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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CR762138; SV 2; linear; mRNA; STD; VRT; 1563 BP.
XX
AC   CR762138;
XX
DT   09-SEP-2004 (Rel. 81, Created)
DT   04-OCT-2006 (Rel. 89, Last updated, Version 6)
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DE   Xenopus tropicalis finished cDNA, clone TGas123d19
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KW   .
XX
OS   Xenopus (Silurana) tropicalis (western clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Silurana.
XX
RN   [1]
RP   1-1563
RA   Amaya E., Ashurst J.L., Bonfield J.K., Croning M.D.R., Chen C-K.,
RA   Davies R.M., Francis M.D., Garrett N., Gilchrist M.J., Grafham D.V.,
RA   McLaren S.R., Papalopulu N., Rogers J., Smith J.C., Taylor R.G., Voigt J.,
RA   Zorn A.M.;
RT   ;
RL   Submitted (04-OCT-2006) to the EMBL/GenBank/DDBJ databases.
RL   Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK. E-mail enquiries:
RL   trop@sanger.ac.uk
XX
CC   Sanger Xenopus tropicalis EST/cDNA project.
CC   
CC   This sequence is from a Xenopus Gene Collection (XGC) library, from a
CC   library constructed by Aaron M. Zorn. cDNA was prepared from RNA extracted
CC   from gastrula embryos. EcoRI-NotI cut cDNA was then ligated into pCS107
CC   with EcoRI at the 5' end and NotI at the 3' end.
CC   Vector: pCS107; Site_1: EcoRI; Site_2: NotI
CC   Host: Escherichia coli XL1-blue
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1563
FT                   /organism="Xenopus (Silurana) tropicalis"
FT                   /mol_type="mRNA"
FT                   /dev_stage="gastrula (stage 10.5-13 mixed)"
FT                   /clone_lib="XGC-gastrula"
FT                   /clone="TGas123d19"
FT                   /db_xref="taxon:8364"
FT   mRNA            1..1546
FT                   /gene="got2"
FT                   /locus_tag="TGas123d19.1-001"
FT                   /product="glutamic-oxaloacetic transaminase 2,
FT                   mitochondrial (aspartate aminotransferase 2)"
FT   CDS             17..1300
FT                   /gene="got2"
FT                   /locus_tag="TGas123d19.1-001"
FT                   /standard_name="OTTXETP00000008095"
FT                   /product="glutamic-oxaloacetic transaminase 2,
FT                   mitochondrial (aspartate aminotransferase 2)"
FT                   /note="match: proteins: P00505 P05202"
FT                   /db_xref="GOA:Q28F67"
FT                   /db_xref="InterPro:IPR015421"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q28F67"
FT                   /protein_id="CAJ83961.1"
FT                   /translation="MALLKSRLLVGVARCQPCLAAVQGRASSWWSHVEMGPPDPILGVT
FT                   EAFKRDTNSKKMNLGVGAYRDDNGKPYVLSSVRKAEAQLASKNLDKEYLPIGGLAEFAR
FT                   ASAQLALGENCDAIQSGRFITVQTISGTGSLRVGANFLQRFYKYSRDVYLPKPSWGNHT
FT                   PIFRDAGLEVKGYRYYDPKTCGFDFTGALDDISKIPEQSIILFHACAHNPTGVDPKQEQ
FT                   WKELAALIKSRRLFPFFDMAYQGFASGDTNRDAWAVRHFIQEGINVVLSQSYAKNMGLY
FT                   GERVGAFTVVCSDAEEAKRVESQLKILIRPMYSNPPLNGARIAAAILTQPDLRKEWLQE
FT                   VKGMANRIISMREQLVSNLKKEGSIHNWQHISDQIGMFCFTGLRPEQVERLIKEFSIYM
FT                   TKDGRISVAGVTSANNGYLAHAIHQVTK"
XX
SQ   Sequence 1563 BP; 426 A; 367 C; 370 G; 400 T; 0 other;
     ctctctcgct gctaacatgg ccctgctgaa gtcccggctc cttgttggag tggctcgatg        60
     ccagccctgc ttggctgctg tgcaaggcag agccagctcg tggtggtctc atgttgagat       120
     gggcccacct gatccaattc tgggtgtcac agaggctttt aaacgtgaca ctaactccaa       180
     aaagatgaac ctgggtgtgg gagcttaccg ggatgacaat ggcaaacctt atgtcctaag       240
     cagtgtgcgt aaggctgaag ctcagttggc atccaaaaat ctggacaagg aatatctccc       300
     cattggaggc ttggcagagt ttgctcgggc atcagcacag ttggcacttg gtgaaaactg       360
     tgacgctatt caaagtggaa ggtttattac tgtacagacc atttctggaa caggatcact       420
     tcgggttgga gccaacttct tgcaaaggtt ctacaagtac agccgtgatg tttacctgcc       480
     aaaaccatcc tggggcaatc acacaccaat atttcgtgat gctgggttgg aggtgaaggg       540
     ttaccgatat tacgatccca agacttgtgg atttgatttt actggtgcac tggatgacat       600
     ctctaaaatc ccagaacaga gcatcatctt attccatgcc tgtgctcata atcctacagg       660
     cgtagacccc aagcaggagc agtggaaaga gctggcagcc ttgatcaaga gtcgacgtct       720
     tttcccattc tttgacatgg cttaccaagg atttgctagt ggagacacta atagagatgc       780
     ctgggctgtc cgccacttca ttcaggaggg aatcaatgta gtactttctc agtcctatgc       840
     caagaacatg ggattgtatg gtgaacgtgt gggtgcattc actgtggttt gcagtgatgc       900
     tgaggaggca aaacgagtgg agtcccagct aaaaattctg atccgcccca tgtattccaa       960
     ccctccactg aatggagcac ggatagcagc agctattttg acccagcctg acctgcgcaa      1020
     ggaatggctc caggaggtca agggaatggc taacagaatt atcagcatgc gggaacagct      1080
     ggtttccaac ctaaaaaaag aaggatccat ccacaactgg cagcacatca gtgaccagat      1140
     tggcatgttc tgctttacag gccttcggcc agagcaggta gaacgtctca tcaaggaatt      1200
     ctccatctat atgactaagg atggccgtat ttctgttgct ggagtaacat cagcaaataa      1260
     tggttacctt gctcatgcta ttcaccaggt caccaaatga gacaaaaaaa gacatctcta      1320
     gcaagctgcc ctctttaagc accttgacaa ccagacccca gaagcactta atattaatgt      1380
     cccagagctt agcatatttg tgtctcactc ctcatagaac tgctagatat cccagaatgc      1440
     atttgtgcag agaacttgtt ggtccttcca tgaagaactg tcacctaaaa cattcatcct      1500
     tttgattcta tttgtgatca ttagatggag gcttcttccc tcatttaaaa aaaaaaaaaa      1560
     aaa                                                                    1563
//
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