EBI Dbfetch

ID   CR760719; SV 2; linear; mRNA; STD; VRT; 1772 BP.
XX
AC   CR760719;
XX
DT   09-SEP-2004 (Rel. 81, Created)
DT   04-OCT-2006 (Rel. 89, Last updated, Version 6)
XX
DE   Xenopus tropicalis finished cDNA, clone TGas135o02
XX
KW   .
XX
OS   Xenopus (Silurana) tropicalis (western clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Silurana.
XX
RN   [1]
RP   1-1772
RA   Amaya E., Ashurst J.L., Bonfield J.K., Croning M.D.R., Chen C-K.,
RA   Davies R.M., Francis M.D., Garrett N., Gilchrist M.J., Grafham D.V.,
RA   McLaren S.R., Papalopulu N., Rogers J., Smith J.C., Taylor R.G., Voigt J.,
RA   Zorn A.M.;
RT   ;
RL   Submitted (04-OCT-2006) to the EMBL/GenBank/DDBJ databases.
RL   Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK. E-mail enquiries:
RL   trop@sanger.ac.uk
XX
CC   Sanger Xenopus tropicalis EST/cDNA project.
CC   
CC   This sequence is from a Xenopus Gene Collection (XGC) library, from a
CC   library constructed by Aaron M. Zorn. cDNA was prepared from RNA extracted
CC   from gastrula embryos. EcoRI-NotI cut cDNA was then ligated into pCS107
CC   with EcoRI at the 5' end and NotI at the 3' end.
CC   Vector: pCS107; Site_1: EcoRI; Site_2: NotI
CC   Host: Escherichia coli XL1-blue
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1772
FT                   /organism="Xenopus (Silurana) tropicalis"
FT                   /mol_type="mRNA"
FT                   /dev_stage="gastrula (stage 10.5-13 mixed)"
FT                   /clone_lib="XGC-gastrula"
FT                   /clone="TGas135o02"
FT                   /db_xref="taxon:8364"
FT   mRNA            1..1754
FT                   /gene="gmppb"
FT                   /locus_tag="TGas135o02.1-001"
FT                   /product="GDP-mannose pyrophosphorylase B"
FT   CDS             10..1092
FT                   /gene="gmppb"
FT                   /locus_tag="TGas135o02.1-001"
FT                   /standard_name="OTTXETP00000006370"
FT                   /product="GDP-mannose pyrophosphorylase B"
FT                   /note="match: proteins: Q8BTZ7 Q9Y5P6"
FT                   /db_xref="GOA:Q68EQ1"
FT                   /db_xref="HSSP:1WVC"
FT                   /db_xref="InterPro:IPR001451"
FT                   /db_xref="InterPro:IPR005835"
FT                   /db_xref="InterPro:IPR011004"
FT                   /db_xref="InterPro:IPR018357"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q68EQ1"
FT                   /protein_id="CAJ83390.1"
FT                   /translation="MKALILVGGYGTRLRPLTLSVPKPLVDFCNKPILLHQVEALVKAG
FT                   VNHVILAVSYMSDMLEKEMKEQEKRLGIRISMSHEKEPLGTAGPLALARELLTENSDPF
FT                   FVLNSDVICDFPFEEMVRFHKHHGKEGTIVVTKVEEPSKYGVVVYEAESGQIQRFVEKP
FT                   QVFVSNKINSGLYIFSPAVLDRIQLRPTSIEKEIFPAMAQEGQLFAMELQGFWMDIGQP
FT                   KDFLTGMCMYLQSVRQKHPEWLHVGPGFIGNVLVDPTAKIGQNCSIGPNVTIGPGVTVE
FT                   DGVRIKRCTIMKGSRLHSHSWLESSIVGWSSSVGQWVRMENVTVLGEDVIVNDELYLNG
FT                   ANVLPHKCISESVPEPRIIM"
FT   polyA_site      1754
XX
SQ   Sequence 1772 BP; 467 A; 380 C; 468 G; 457 T; 0 other;
     taggtcaata tgaaggcgct aattctcgtt ggtggatatg gcactaggct gcgtcctttg        60
     acactgagtg ttccaaagcc attggtggac ttctgtaaca aacccatact actgcaccaa       120
     gtggaggccc tggtaaaggc tggagttaat catgtgatcc tcgctgtcag ctacatgtcc       180
     gacatgttag aaaaggagat gaaggagcag gaaaagaggc ttgggatccg aatctcaatg       240
     tcgcatgaaa aggagccttt gggtacagct ggtcctttag ccctggccag ggaactacta       300
     accgagaact ccgacccatt ctttgtccta aacagtgatg tcatttgtga ctttcctttt       360
     gaggagatgg tgcgattcca taaacaccac gggaaagaag gaaccattgt ggtaacaaag       420
     gtggaggaac cttcaaaata tggagttgtt gtatacgagg cagagtcagg gcaaatacag       480
     cgctttgtgg agaagccaca ggtgtttgtg tccaacaaga tcaactcagg actgtatatc       540
     ttctccccgg ctgtgctgga tcgtattcag ctacgtccga cctccataga aaaggaaatc       600
     ttccctgcta tggcacagga gggtcagttg tttgctatgg agctgcaagg gttctggatg       660
     gacattggtc agcctaaaga tttcctgact ggcatgtgca tgtacctcca gtctgtcagg       720
     cagaagcacc cagagtggct tcatgtggga cctggcttta ttgggaatgt tctggtggat       780
     cccacagcta agattggtca gaactgcagc attggcccta atgtgactat tggccctggt       840
     gtgactgtag aggacggtgt gcgtatcaag cgatgcacta tcatgaaagg atccaggctg       900
     cattcccatt cctggctcga gtcctccatt gttggttgga gctcatcagt aggacagtgg       960
     gtgcgcatgg agaacgtgac cgtgctgggc gaggatgtca ttgttaatga tgagctttac      1020
     ctgaatggag ccaacgtcct gccgcacaag tgcatctccg agtctgtacc cgagccacgg      1080
     ataatcatgt agaagtgcaa cgctactgct cagacagcac ttcgctctat ttggattggg      1140
     ggctgtgacc tttattctgt gctgtccagc agtgagggtt ttgcgctata gtacagagga      1200
     gcacagaaat aaagaagagt ataatctcag gatatggcat cctctacaat catgggtata      1260
     caggctggcg cagtgctaag agtatggcta gtttgccagt aggcatggga gttgagggac      1320
     tgtctgtcgg actgtggtgc cttggtttct tgatgagccg ggacaacttg ctgggaatcg      1380
     ggctgttacc cctccagatg ttctgtgata taaggagcag ccttcccagg ggcctcagat      1440
     actgaaagga actgccaaac actgtgctca gcccaactct ccaacttccc ataactgctg      1500
     cttcttcatg ggcctagaac tcagtggaaa ttgccagtaa taccggtggc tgaaggctac      1560
     aatgaatatc aggtacagtg tgccactccc atgtctcact gcagcctgtg ggtatttaat      1620
     ggaagcaggg ttttaaaagg atttaaaatg cagatttctc atacagagtg ccagatgaat      1680
     ttactatgag aactctactg tgtcatttgt gttttaaaaa aacaaacatc ttataaagaa      1740
     gatttttaac taccaaaaaa aaaaaaaaaa aa                                    1772
//