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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CR760225; SV 2; linear; mRNA; STD; VRT; 1337 BP.
XX
AC   CR760225;
XX
DT   09-SEP-2004 (Rel. 81, Created)
DT   21-OCT-2008 (Rel. 97, Last updated, Version 7)
XX
DE   Xenopus tropicalis finished cDNA, clone TNeu053h21
XX
KW   .
XX
OS   Xenopus (Silurana) tropicalis (western clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Silurana.
XX
RN   [1]
RP   1-1337
RA   Amaya E., Ashurst J.L., Bonfield J.K., Croning M.D.R., Chen C-K.,
RA   Davies R.M., Francis M.D., Garrett N., Gilchrist M.J., Grafham D.V.,
RA   McLaren S.R., Papalopulu N., Rogers J., Smith J.C., Taylor R.G., Voigt J.,
RA   Zorn A.M.;
RT   ;
RL   Submitted (04-OCT-2006) to the EMBL/GenBank/DDBJ databases.
RL   Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK. E-mail enquiries:
RL   trop@sanger.ac.uk
XX
CC   Sanger Xenopus tropicalis EST/cDNA project.
CC   
CC   This sequence is from a Xenopus Gene Collection (XGC) library, from a
CC   library constructed by Aaron M. Zorn. cDNA was prepared from RNA extracted
CC   from neurula embryos. EcoRI-NotI cut cDNA was then ligated into pCS107 with
CC   EcoRI at the 5' end and NotI at the 3' end.
CC   Vector: pCS107; Site_1: EcoRI; Site_2: NotI
CC   Host: Escherichia coli DH10B
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1337
FT                   /organism="Xenopus (Silurana) tropicalis"
FT                   /mol_type="mRNA"
FT                   /dev_stage="neurula"
FT                   /clone_lib="XGC-neurula"
FT                   /clone="TNeu053h21"
FT                   /db_xref="taxon:8364"
FT   mRNA            1..1313
FT                   /gene="hsd17b12"
FT                   /locus_tag="TNeu053h21.1-001"
FT                   /product="hydroxysteroid (17-beta) dehydrogenase 12"
FT   CDS             47..1009
FT                   /gene="hsd17b12"
FT                   /locus_tag="TNeu053h21.1-001"
FT                   /standard_name="OTTXETP00000010169"
FT                   /product="hydroxysteroid (17-beta) dehydrogenase 12"
FT                   /note="match: proteins: O70503 Q6P3L6 Q6P7R8 Q7ZUN4 Q9Y6G8
FT                   Q9Z1B9"
FT                   /db_xref="GOA:Q28IU1"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q28IU1"
FT                   /protein_id="CAJ83357.1"
FT                   /translation="MATESLAEVPVPGCNCFWYLGVVAAVWWGLRAAWCLLDGARVWVL
FT                   GSGAQVGPRIGKWAVVTGATDGIGKAYAEELAKRGMNIVLISRSPEKLEEVAKQIKEKF
FT                   KVETKIIAADFGKPTEIYGRIESGLRDLEIGVLVNNVGVSYEHPEYFLEIPDLENTLDK
FT                   MININITSVCQMTRLVLPGMLGRGRGVILNISSASGMYPVPLLTVYSATKAFVDFFSRG
FT                   LQAEYRSKGVTVQSVLPFYVATKLAKIRKPTWDKPSPETYVQSALNTVGLQTQTNGYLP
FT                   HAIMGWISTSLVPVSTAISLGMKMNKGLRARFLKRAKQK"
XX
SQ   Sequence 1337 BP; 335 A; 345 C; 369 G; 288 T; 0 other;
     ggtgccgttc catttagccc aaccattccc gtgtttcccg tgggacatgg ccacggagtc        60
     cctggcggag gtcccggtac ctggctgtaa ttgcttctgg tacttgggtg tggtagcggc       120
     cgtctggtgg gggctgaggg ctgcatggtg cttgctggac ggtgcccggg tctgggtact       180
     ggggagtgga gcgcaggtgg gccccaggat cgggaaatgg gcagtggtta ccggtgccac       240
     cgatgggatc ggaaaagcct atgctgaaga gctcgcaaag cggggaatga atatcgttct       300
     gatcagcaga tctcctgaaa aactcgaaga ggtcgctaaa caaataaaag agaaattcaa       360
     ggtggagacg aagatcattg cggcggattt tgggaaaccc acggaaatct acgggcggat       420
     agaatcgggc ttgcgagatc tggagattgg cgtccttgtt aacaatgttg gcgtttctta       480
     tgaacaccca gagtatttcc tcgaaatccc agacttggaa aataccctgg acaaaatgat       540
     caatattaac attacgtcag tatgtcagat gacgcgcttg gtgctgccgg gaatgctggg       600
     aagaggcagg ggcgtcatct tgaacatctc ctccgccagc ggcatgtatc ccgtcccctt       660
     actgactgtg tattcggcta ctaaggcgtt tgtggatttc ttctcccggg ggctccaagc       720
     cgagtacaga agcaagggtg tcaccgtgca gagcgttctc ccattctatg ttgccaccaa       780
     actggccaag atccgtaagc cgacctggga caagccaagc cctgaaacct acgtccaatc       840
     agctctgaat acggtgggct tacagacgca gaccaatggc tacctgcccc acgccatcat       900
     gggttggatc agcacctccc ttgtgccggt ctccaccgcc atcagcctgg gcatgaagat       960
     gaacaagggt ctccgcgctc ggttcttgaa gagagcgaaa caaaaatagg aggcggggct      1020
     actgtggccc tcggcactta cagccaagag actgcgccaa caccaccaac caaaggaacc      1080
     tgcccagtct gccttgatct ctgagcagga atgtgccacc cagtgtgcta tggcagctcc      1140
     cttccccaga aactagttta ctaacccacc tatgcaggct gcacagctaa ctaactggag      1200
     ggcgagatgg gactgatcat gtgatctgca ctgtgtatgg aatgttctac tgcactcagc      1260
     tgtcccctgc tccctagcaa tggattaacc ccgattagta ataaatccgt aacaaaaaaa      1320
     aaaaaaaaaa aaaaaaa                                                     1337
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