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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CR760012; SV 2; linear; mRNA; STD; VRT; 1019 BP.
XX
AC   CR760012;
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DT   09-SEP-2004 (Rel. 81, Created)
DT   04-OCT-2006 (Rel. 89, Last updated, Version 6)
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DE   Xenopus tropicalis finished cDNA, clone TNeu063o20
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KW   .
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OS   Xenopus (Silurana) tropicalis (western clawed frog)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC   Batrachia; Anura; Mesobatrachia; Pipoidea; Pipidae; Xenopodinae; Xenopus;
OC   Silurana.
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RN   [1]
RP   1-1019
RA   Amaya E., Ashurst J.L., Bonfield J.K., Croning M.D.R., Chen C-K.,
RA   Davies R.M., Francis M.D., Garrett N., Gilchrist M.J., Grafham D.V.,
RA   McLaren S.R., Papalopulu N., Rogers J., Smith J.C., Taylor R.G., Voigt J.,
RA   Zorn A.M.;
RT   ;
RL   Submitted (04-OCT-2006) to the EMBL/GenBank/DDBJ databases.
RL   Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK. E-mail enquiries:
RL   trop@sanger.ac.uk
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CC   Sanger Xenopus tropicalis EST/cDNA project.
CC   
CC   This sequence is from a Xenopus Gene Collection (XGC) library, from a
CC   library constructed by Aaron M. Zorn. cDNA was prepared from RNA extracted
CC   from neurula embryos. EcoRI-NotI cut cDNA was then ligated into pCS107 with
CC   EcoRI at the 5' end and NotI at the 3' end.
CC   Vector: pCS107; Site_1: EcoRI; Site_2: NotI
CC   Host: Escherichia coli DH10B
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FH   Key             Location/Qualifiers
FH
FT   source          1..1019
FT                   /organism="Xenopus (Silurana) tropicalis"
FT                   /mol_type="mRNA"
FT                   /dev_stage="neurula"
FT                   /clone_lib="XGC-neurula"
FT                   /clone="TNeu063o20"
FT                   /db_xref="taxon:8364"
FT   mRNA            1..1001
FT                   /locus_tag="TNeu063o20.1-001"
FT                   /product="Novel protein with MIF domain"
FT   CDS             14..370
FT                   /locus_tag="TNeu063o20.1-001"
FT                   /standard_name="OTTXETP00000006364"
FT                   /product="Novel protein with MIF domain"
FT                   /db_xref="GOA:Q28J83"
FT                   /db_xref="InterPro:IPR014347"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q28J83"
FT                   /protein_id="CAJ83351.1"
FT                   /translation="MPFVELDTNLPPQQVPQDLAEKLCSATATILSKPRERVNVTVRTG
FT                   VSMVVGGSCAPCTQLLVSSIGVVGTAEQNKEHSAKFFQFLTENMGLEQDRILLRFVPLE
FT                   PWQVGKKATVMTFL"
FT   polyA_signal    983..988
FT   polyA_site      1001
XX
SQ   Sequence 1019 BP; 330 A; 209 C; 210 G; 270 T; 0 other;
     cccgggggga attatgccat tcgtggagct ggacactaac ctgccgccgc aacaagtacc        60
     ccaggacttg gcggagaagc tctgctcagc tactgctacc attctgagca aaccaaggga       120
     gagggtaaat gtgactgtga ggactggagt ctccatggta gtgggaggtt catgtgcacc       180
     atgcacccaa ctgcttgtct cctctatcgg agtggtggga acagcagaac agaacaaaga       240
     acacagtgct aagttctttc agttcctgac agaaaacatg ggccttgaac aggacaggat       300
     tttgctgagg tttgttccat tagagccatg gcaggttgga aaaaaagcaa cagtcatgac       360
     gtttctataa cttctcaaga agttagagac cacaactgca cagaatcacc atatccatct       420
     ctactatgac caagataccg agtgtacagc catctgtatg ctacatgtca cctgatatta       480
     cacaagctgt aaaaaaatta tcacagtccc tccaaaaaag gggtccgaac aaaacagatt       540
     aatttgcaag gttaatcgga acccatttta gccacccaac caaaaatctc atgctttctt       600
     tctgggtaaa agacaaacac catactgttc agtgtacttg atggaactag ttgagctgct       660
     gtatatttta ctgaattgca acctgcagct gtccacagac acagctatag tatcaagtag       720
     atacaagtct aaagcagtta agtagtaata agtattcttg aaaaatgctt caacaattat       780
     ctgtgaactg aagaagcgac ttggataact ggtgaaatgt ttttaagatt acatagcaaa       840
     gtccgttgat ttagtcatat ctgtacttga taaccatcta tcatgctttc ttggtgtggt       900
     ctgcaataca tgttttctct gacttatgaa aggcaacaag actgtctact ctgaagttgc       960
     attccatgat gtatttttgg taaataaaag tcattatgaa taaaaaaaaa aaaaaaaaa       1019
//
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