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EBI DbfetchID CP000123; SV 1; circular; genomic DNA; STD; PRO; 1010023 BP. XX AC CP000123; XX DT 09-DEC-2005 (Rel. 86, Created) DT 22-FEB-2006 (Rel. 86, Last updated, Version 2) XX DE Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome. XX KW . XX OS Mycoplasma capricolum subsp. capricolum ATCC 27343 OC Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma. XX RN [1] RP 1-1010023 RA Glass J.I., Lartigue C., Pfannkoch C., Baden-Tillson H., Smith H.O., RA Venter J.C., Roske K., Wise K.S., Calcutt M.J., Nelson W.C., Nierman W.C.; RT ; RL Submitted (16-SEP-2005) to the EMBL/GenBank/DDBJ databases. RL The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, MD RL 20850, USA XX DR GR; CP000123_GR. DR RFAM; RF01118; PK-G12rRNA. DR SILVA-LSU; CP000123. DR SILVA-SSU; CP000123. DR UniProtKB/Swiss-Prot; P45619; Y234A_MYCCT. XX CC Source organism was obtained from American Type Culture Collection. CC Contact: John Glass (jglass@venterstitute.org) CC Whole genome sequencing and draft assembly at TIGR CC Finishing done by TIGR CC Quality assurance done by TIGR CC Annotation done by The J. Craig Venter Institute and The University CC of Missouri. XX FH Key Location/Qualifiers FH FT source 1..1010023 FT /organism="Mycoplasma capricolum subsp. capricolum ATCC FT 27343" FT /sub_species="capricolum" FT /strain="ATCC 27343" FT /mol_type="genomic DNA" FT /note="strain coidentity: ATCC 27343 = California kid" FT /db_xref="taxon:340047" FT gene 1..1353 FT /gene="dnaA" FT /locus_tag="MCAP_0001" FT CDS 1..1353 FT /codon_start=1 FT /transl_table=4 FT /gene="dnaA" FT /locus_tag="MCAP_0001" FT /product="chromosomal replication initiator protein DnaA" FT /note="identified by similarity to SP:P24116; match to FT protein family HMM PF00308; match to protein family HMM FT TIGR00362" FT /db_xref="GOA:P24116" FT /db_xref="HSSP:1L8Q" FT /db_xref="InterPro:IPR013317" FT /db_xref="UniProtKB/Swiss-Prot:P24116" FT /protein_id="ABC01518.1" FT /translation="MNLNDILKELKLSLIANKNIDESVYNDYIKTINIYKKDLSNYVVV FT VKSQFGLLAIKQFRPTIENEIKKILKQPVNISFTYEQEYQKQLEKTESINKDHSDIISK FT KNKKVNENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKN FT YIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEVCQNDVLIIDDVQFLSYKE FT KTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTAT FT AIIKKEIKNQNIKTEVTNEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKVITIEI FT ISDLFRDIPTSKLGILNVKKIKEVVSEKYGISVNAIDGKARSKSIVTARHIAMYLTKEI FT LNHTLAQIGEEFGGRDHTTVINAERKIEMMLKKDKQLKKTVDILKNKILTK" FT gene 1518..2645 FT /gene="dnaN" FT /locus_tag="MCAP_0002" FT CDS 1518..2645 FT /codon_start=1 FT /transl_table=4 FT /gene="dnaN" FT /locus_tag="MCAP_0002" FT /product="DNA polymerase III, beta subunit" FT /EC_number="2.7.7.7" FT /note="identified by similarity to SP:P05649; match to FT protein family HMM PF00712; match to protein family HMM FT PF02767; match to protein family HMM PF02768; match to FT protein family HMM TIGR00663" FT /db_xref="GOA:P24117" FT /db_xref="InterPro:IPR001001" FT /db_xref="UniProtKB/Swiss-Prot:P24117" FT /protein_id="ABC01687.1" FT /translation="MNFSINRIVLLDNLSKAAKVIDYKNVNPSLSGIYLNVLNDQVNVI FT TTSGILSFKSILNNQNSDLEVKQEGKVLLKPKYVLEMLRRLDDEFVVFSMVEDNELIIK FT TNNSDFSIGVLNSEDYPLIGFREKGIEFNLNPKEVKKTIYQVFVSMNENNKKLILTGLN FT LKLNNNQAIFSTTDSFRISQKILEIQSDNNEDIDITIPFKTALELPKLLDNAENLKIII FT VEGYITFIIDNVIFQSNLIDGKFPNVQIAFPTKFETIITVKQKSILKVLSRFDLVADDG FT LPAIVNIKVNEDKIEFKSFISEVGKYEEDFDDFVIEGNKSLSISFNTRFLIDAIKTLSE FT DRIELKLINSTKPIVINNVYDEHLKQVILPTFLSN" FT gene 2682..3224 FT /locus_tag="MCAP_0003" FT CDS 2682..3224 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0003" FT /product="primase-related protein" FT /note="identified by match to protein family HMM PF01751; FT match to protein family HMM TIGR00334" FT /db_xref="GOA:P43041" FT /db_xref="InterPro:IPR006171" FT /db_xref="UniProtKB/Swiss-Prot:P43041" FT /protein_id="ABC01791.1" FT /translation="MSKIKQIIIVEGKTDSDKLKRIYGNDLKTIQTKGLSINKKTLEMI FT KEFNNKTGVIIFTDPDGAGKKIRQTIIDYLDNKVLNAFIKKDDISKTSKKVGIAEASDD FT AIKKALDNLIIYDKNNVSLSWTDYINNNFYLKSNRIVICKYFNFDNNISSKTLFKWLNW FT MNVSIDDIKKIIGEYES" FT gene 3214..4014 FT /gene="ksgA" FT /locus_tag="MCAP_0004" FT CDS 3214..4014 FT /codon_start=1 FT /transl_table=4 FT /gene="ksgA" FT /locus_tag="MCAP_0004" FT /product="dimethyladenosine transferase" FT /EC_number="2.1.1.-" FT /note="In E. coli, deletion of this gene leads to FT resistance to the antibiotic kasugamycin. This protein is FT responsible for the dimethylation of two adjacent adenosine FT residues in a conserved hairpin of 16S rRNA in bacteria FT (role_id=168); identified by match to protein family HMM FT PF00398; match to protein family HMM TIGR00755" FT /db_xref="GOA:P43038" FT /db_xref="InterPro:IPR011530" FT /db_xref="UniProtKB/Swiss-Prot:P43038" FT /protein_id="ABC01116.1" FT /translation="MKAKKYYGQNFISDLNLINKIVDVLDQNKDQLIIEIGPGKGALTK FT ELVKRFDKVVVIEIDQDMVEILKTKFNHSNLEIIQADVLEIDLKQLISKYDYKNISIIS FT NTPYYITSEILFKTLQISDLLTKAVFMLQKEVALRICSNKNENNYNNLSIACQFYSQRN FT FEFVVNKKMFYPIPKVDSAIISLTFNNIYKKQINDDKKFIEFVRTLFNNKRKTILNNLN FT NIIQNKNKALEYLKMLNISSNLRPEQLDIDEYIKLFNLIYISNF" FT gene 4069..5163 FT /locus_tag="MCAP_0005" FT CDS 4069..5163 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0005" FT /product="membrane protein, putative" FT /note="MCAP_0005 has 3 membrane spanning regions" FT /db_xref="GOA:P43040" FT /db_xref="UniProtKB/Swiss-Prot:P43040" FT /protein_id="ABC01327.1" FT /translation="MISDFNNQEITLEDLEQNNVKLKEGKAKVQFLMRFSLVFSNIFTH FT IFLFLLIIVSGLFFGLRYTYYNYKIDLITNVYKIKPSIPKLKEIYKEVLEVVDEVKRET FT DKNSEDSLINKIDEIRGIVKEVTNIAKEFDEKSKEVKPKVEKVIQEGKQVTSNLDKITK FT EIQALQVNGNGLASRVRRSLTGDINTITNLANNIDFDFNSVKESIEKITGLAQQISKEG FT KSITKNVEEIKNEVEYFTGKSKEPLKDIDKIKQIYDKKIPIFEKNNKKLQEIWNKLMGI FT YNEFTVKETKKDYYNYVIYILLFLIIDSLILLVITYMSMISKTIKKLLLFYIFGLLSFN FT PIVWASIIISLFSRPIKNRKNKFY" FT gene 5232..5308 FT /gene="mcs1" FT /locus_tag="MCAP_0006" FT misc_RNA 5232..5308 FT /gene="mcs1" FT /locus_tag="MCAP_0006" FT /product="4.5S RNA" FT gene 5328..5771 FT /locus_tag="MCAP_0007" FT CDS 5328..5771 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0007" FT /product="cytidine/deoxycytidylate deaminase zinc-binding FT domain protein" FT /note="identified by match to protein family HMM PF00383" FT /db_xref="GOA:Q2STA7" FT /db_xref="InterPro:IPR016192" FT /db_xref="UniProtKB/TrEMBL:Q2STA7" FT /protein_id="ABC01127.1" FT /translation="MDDFNNILDLLINESKKAIKHNDIPVSCCIIDSNNNILSLAINSR FT YKNKDISQHAEINVINDLISKLNSFNLSKYKLITTLEPCMMCYSAIKQVKINTIYYLVD FT SYKFGIKNNYSINDQNLNLIQIKNQKKQSEYIKLLNIFFINKR" FT gene 5851..7860 FT /gene="dnaX" FT /locus_tag="MCAP_0008" FT CDS 5851..7860 FT /codon_start=1 FT /transl_table=4 FT /gene="dnaX" FT /locus_tag="MCAP_0008" FT /product="DNA polymerase III gamma-tau subunits" FT /note="identified by similarity to SP:P09122; match to FT protein family HMM PF00004; match to protein family HMM FT TIGR02397" FT /db_xref="GOA:Q2STA6" FT /db_xref="InterPro:IPR012763" FT /db_xref="UniProtKB/TrEMBL:Q2STA6" FT /protein_id="ABC01848.1" FT /translation="MNTNKQSLYRAYRPKDFNSVAGHNSIKEILEKQIKDNRINHALLF FT SGQRGTGKTSVARIFAKTVNCLNLTGSKACEQCNNCKLANENQLIDIIEIDAASNNGVD FT EIREIKNSVSTLPINSKYKVYIIDEVHMLTKQAFNALLKTLEEPPVYTIFILATTEFNK FT IPQTILSRCQIFNFTKIDKNSLKNRLQYIVNQENYQIEKEVLDEIFYLSEGSLRDAINI FT LEQLMLATDDLITIKNLKSIFLIATKQEQLQVIHQSLNNNTNFIISYFQKANDQGMNWD FT VFALGLIEILKEIIEYKLTNNIEFLNILEEDEAKQFINIDVNHLFLLSDNLAEAYFKTK FT AANISFNYLLLSLLKTINSNNKQENIQTINQNINNVESIDLLEQQDVIKQNYVQEFITN FT NEITDQSVDEIFIRPNIKNQTIDQQEVELVKKEEIFTNQIQQENNFDELVIDEPMNNSN FT EQDIDVKFVNNNQELELTSEFYKTFSELKSKFNVCVSNSIDSKVKMLSNDDLISIFIQT FT KNYKDDKKILENLFEELFKEQDDILINPVQATNLFMLIDSKIISFTNEVIVVKTQTKTQ FT SNLINDSMLDNHVLQAIYQWFKKPYIIFAIDKMKWDEIKTIFIDLKNKNKLSEYNIIDQ FT KQLKEKYLTINNKLDEDLINKAKDLFNDDFMIGD" FT gene 7862..8452 FT /gene="recM" FT /locus_tag="MCAP_0009" FT CDS 7862..8452 FT /codon_start=1 FT /transl_table=4 FT /gene="recM" FT /locus_tag="MCAP_0009" FT /product="DNA repair protein RecM" FT /note="identified by similarity to SP:P24277; match to FT protein family HMM PF01751" FT /db_xref="GOA:Q2STA5" FT /db_xref="InterPro:IPR006154" FT /db_xref="UniProtKB/TrEMBL:Q2STA5" FT /protein_id="ABC01194.1" FT /translation="MPESIFNEIVESIRTNEGLTKKTSERLLVNLLLNKDKLDEFINQL FT NKVNQLISTCKICGYLSENNKCLVCSLDNRNQNTICIVSTILDAKNIENANKYKGVYHI FT LNGEINLNKNITFDKLNISSIFKRINDDTEIILALNSTFEGELTANYLYKLLSTKNIKI FT TRLAKGIPMGASLDYMDEFTLQSAFINRKKYGE" FT gene 8455..9096 FT /gene="tmk" FT /locus_tag="MCAP_0010" FT CDS 8455..9096 FT /codon_start=1 FT /transl_table=4 FT /gene="tmk" FT /locus_tag="MCAP_0010" FT /product="thymidylate kinase" FT /EC_number="2.7.4.9" FT /note="identified by similarity to SP:P37537; match to FT protein family HMM PF02223; match to protein family HMM FT TIGR00041" FT /db_xref="GOA:Q2STA4" FT /db_xref="InterPro:IPR018095" FT /db_xref="UniProtKB/Swiss-Prot:Q2STA4" FT /protein_id="ABC01235.1" FT /translation="MFITFEGMDGSGKTTALLKVKEELERLNYKVLITREPGGEVIAEQ FT IRQIILDNKNKDMDAWTEALLFIASRNQHLQKVIKPALEKNIIVISDRFIDSTSAYQGS FT ARNIGVDVVSEVQQIVLKNCLPDLTLFFDVSFSEAEKRMQIRGESSKNRLDKEENNFKQ FT KVYQGYLELVKNNPKRIKVIDANKDIDQVYNQAIKIILEKLKENEKRTSN" FT gene 9074..9817 FT /locus_tag="MCAP_0011" FT CDS 9074..9817 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0011" FT /product="DNA polymerase III, delta prime subunit" FT /EC_number="2.7.7.7" FT /note="identified by similarity to SP:P37540" FT /db_xref="GOA:Q2STA3" FT /db_xref="UniProtKB/TrEMBL:Q2STA3" FT /protein_id="ABC01429.1" FT /translation="MKKEQVISRLKKLIDNNKLFSNIILNCKNEQISLDVVEQIIYYAF FT SKNLENIDFDKLKEQIKNNTHIDILTIGNNNLVITNQEVLNLINKMSLSAIGKQNIKFF FT IIKNAQNLKQSAANSLLKFLEEPPINTYGILLTNNYSEIINTIWSRCQLINIDNETKID FT NKLNRFEELLISKNKDEILLFNKEMKAMNKNELVKMIDDAYNRTIIYQFTNLISCTLEL FT LDDLKFLPLTNIAIDNYLIRIVEQI" FT gene 9877..10539 FT /locus_tag="MCAP_0012" FT CDS 9877..10539 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0012" FT /product="N-6 adenine-specific DNA methylases, putative" FT /EC_number="2.1.1.72" FT /db_xref="GOA:Q2STA2" FT /db_xref="InterPro:IPR007848" FT /db_xref="UniProtKB/TrEMBL:Q2STA2" FT /protein_id="ABC01339.1" FT /translation="MFNFTLDSVLVARFCNLNSKKKKICDFGTNNAVIPLILSKYTKAK FT IIGVEIQNKAVEIANENIKLNGLEDQIEIVHADIKEFSKLHNQEFDLVVCNPPFFKMDG FT NPKLKEISLEVANARHEILITLEDIIKSASRCLKNKGNFTIVHRSERLSEIINLFYKYN FT IYPKRLRLIQSKKTDNAKMILLDGIYQGNEGMEILPTLITHNDDETYTDELLKYFHD" FT gene 10590..11411 FT /locus_tag="MCAP_0013" FT CDS 10590..11411 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0013" FT /product="conserved hypothetical protein" FT /note="This protein has some homology to RpiR family FT transcriptional regulators." FT /db_xref="GOA:Q2STA1" FT /db_xref="InterPro:IPR000281" FT /db_xref="UniProtKB/TrEMBL:Q2STA1" FT /protein_id="ABC01672.1" FT /translation="MDAKKVIFKLDQLAKERGTTIGNISKVILNNLELITNLTIYKVAD FT LCFVSPSTITRVCQKYLDISGFSELQILIRVYLNEQEKQDKDEKEGKKISKFTEIKDAI FT NVTDALIDIAEVDKIVRTLYSTKTVALISYDNSVKHAVAELAEKMNLIGIPPVIINQQT FT DLDYFTKISDLNWLFIVISHFAENSTTFQSILQLKKNGSKIALISMNKQNKYSSVCDYW FT VKYAVSDDDPLQKIKHSANFSLLYVVQVLFNRILKNDKQRFEKIIKTLKID" FT gene 11416..12621 FT /locus_tag="MCAP_0014" FT CDS 11416..12621 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0014" FT /product="conserved hypothetical protein" FT /note="This family of proteins belongs to the PP-loop FT superfamily (MEDLINE:7731953) for which no biological role FT has been determined; identified by match to protein family FT HMM PF01171; match to protein family HMM TIGR02432" FT /db_xref="GOA:Q2STA0" FT /db_xref="InterPro:IPR012094" FT /db_xref="UniProtKB/TrEMBL:Q2STA0" FT /protein_id="ABC01528.1" FT /translation="MNLFNIDTNKKYLLAISGGPDSVFLLCNIVKIIDSKNLVVCHVNY FT NFRSDSINDQKIVINLCKKFDLKLEILNINKDYSLLKENFESWARFQRYDFFNKIAKKY FT QIYNLLVAHNFNDLIETYLLQLQRNNLVDYYGLKTVSHYKDLVVYRPLLDIKKSEILDY FT LKTNQISYAIDSTNTDIKYQRNKIRSIIDESIFIDIKNQIDIDNKKLETIKKIVNNYLE FT HNLTNKELILNKELFLLESNIIKRIIYKYFKLINKEKLLINRSNKTISEVAKRLVESNK FT SFWKINLNDHSLIKDYKKLFVIKNSLLEAKTIIINNLDDLANQTSFKDIKEIEQIIVRE FT KKFSYVISNDYEAYKSITTIRNKKTNRYFIDRKISYKTRFLAPVVYNIKDKIILNKVKK FT HY" FT gene complement(12618..13454) FT /locus_tag="MCAP_0015" FT CDS complement(12618..13454) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0015" FT /product="hypothetical protein" FT /note="identified by Glimmer2; putative" FT /db_xref="UniProtKB/TrEMBL:Q2ST99" FT /protein_id="ABC01845.1" FT /translation="MTYYLNFYLDESGNAISDFFVVGGFYLNDSDYQNIQVYESKIKSN FT ILKTEKSIRNYRNNFETDLKPYELKKEVKWNNLSLNNKKALSSKIRFNNQTNISMISSL FT KDWQSKYSKQINLEAIYNMMVKNLIERTIKSLSIKKIIKNKDILNIKVYIDQRRISVKN FT KNNKQQKFEALEGYLKTYFYWNLHFKDIQVKVVQFESISHPLIRYADYLVGSIASMCNF FT LNNSDKSWYQNADLIFEQMHKKVPCTCSQTIVKQSKIIEQIISLCQKHNHIRESKN" FT gene complement(13475..13569) FT /gene="mcs2" FT /locus_tag="MCAP_0016" FT misc_RNA complement(13475..13569) FT /gene="mcs2" FT /locus_tag="MCAP_0016" FT /product="MCS2 RNA" FT gene 13687..15639 FT /gene="ftsH" FT /locus_tag="MCAP_0017" FT CDS 13687..15639 FT /codon_start=1 FT /transl_table=4 FT /gene="ftsH" FT /locus_tag="MCAP_0017" FT /product="ATP-dependent metalloprotease FtsH" FT /note="identified by match to protein family HMM PF00004; FT match to protein family HMM PF01434; match to protein FT family HMM PF06480; match to protein family HMM TIGR01241" FT /db_xref="GOA:Q2ST98" FT /db_xref="InterPro:IPR003960" FT /db_xref="UniProtKB/TrEMBL:Q2ST98" FT /protein_id="ABC01758.1" FT /translation="MNKKKRKSTIWFWIILIVGFIILISVISITSRGTAQNLTIDQLHS FT LFKENKAFNNVVLQRNNIQGIDIITGWYNNGSGWTKFVVNTNPNAINSFNVLDKAFSDF FT IWRSNTTRYTESSWFSLLSSLLPMFILILFYIGLFYFMAKSGAAGAGASGLFGMGKNKA FT RREKSNVKFSDVAGIEEEKSELVELVDYLKQPAKYASAGARAPKGVLMEGPPGTGKTLL FT AKAVAGEANVSFFSIAGSEFEEMFVGVGASRVREMFNEAKKSAPAIIFIDEIDAVGRKR FT NSAIGTGTNEQTLNQLLVELDGFETNSGIIVMAATNRVDVLDPALLRPGRFDRVIQVSL FT PDIKEREQILKLHARNKKIDPSIDWHRIAERTPGFSGAQLENVLNEAAILMVREGKTVI FT GVNEIDEAIDRVVGGPAKKSRAMTMHDKEIVSYHESGHALIGLKLESASKVQKVTIIPR FT GNAGGYTIMTPKDETLFSSKADLYAMIAGYLGGRAAEEIKFGKDNVTTGAHDDFDKATA FT IARRMVMQFGMSELGITKFLTMADEAYGKTEGSYSEKTAAKIDAEVERILEESYKLAIK FT VISENMETLELLAESLRILETITSEQIDYINKNKKLPEAVIYEKEKYKQEQEKINSGKI FT IDLDIKDVKEDDKDK" FT gene complement(16712..22105) FT /locus_tag="MCAP_0018" FT CDS complement(16712..22105) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0018" FT /product="membrane protein, putative" FT /note="MCAP_0018 has 8 membrane spanning regions; MCAP_0018 FT has characteristics of an ABC transporter permease protein; FT however it is not near any ATPase; identified by match to FT protein family HMM PF02687" FT /db_xref="GOA:Q2ST97" FT /db_xref="InterPro:IPR003838" FT /db_xref="UniProtKB/TrEMBL:Q2ST97" FT /protein_id="ABC01646.1" FT /translation="MKNLYLMLKQGVKWILKFKLQLVVIVVLTFIASSILTISFTTNKR FT LSSAYNQVVNNQNSPKFDSTYQITVGSKARPKKGEPLFIPIFDFVNKQYTGFKDEGYDN FT FNLTFNDIYGEKNLLTIATSSKEFKDAWARKKDIFIYEDNDDDKKQIANQQQDFDFVIN FT DAFFNTMVDLLSKNDPAIKNTVIGRYTQSNPNWYKHFYNKEKNIKSNWSDFIKNKTKIQ FT NLKNTNPDDLKTYFYSYYAFESLSQYFFKTIQTFLQDSKNELSQQTFAHQEEAYKYFYE FT FLFGKYFDENNKKASYKDEYIATNDNLYTLTFDSSVPTSEFQKMKFLIKLENKDDKQQE FT QDFFTQLVKQGFKGILRPLQITYHNTGNETDITNVIQYSETQELRGFVSNSNTYSQDVK FT ELPEIFKNNSFVDILAMNADPFANIGEKSINFYTSKTNDLETTVASDFPITAAFLTHHK FT LSALANGYDLYIRPETIFNDPITKKTFRIVDISNKNYTNYIILNGHAPSSASEITISKQ FT FAKANKIRICDRLTLGNAKGLIVTGYAVDTYSFFPTSDPNVPLPKSDSGGLIYADFTTI FT NQILGDGNSATGNDQTSTFNFFLIKNNNSLNIKNVYFDHFSVADKIRDNIIAKQKGTEI FT QTFYKNQQFSDSSYSLNWTLYQRVAFWYSLATFLTASLIALVSALAVFVGVIKSIQANS FT KQIGILKANGASSSTISWSYVSYAVILVFIAIPLGWMAGTMLQVPFVAIFKDYFSFKTN FT VLTYDWLAPLISIIIFGVLIGVFSFLVALFHIKKPVLDIIKSSKKWSKPKITDWLHKRI FT FKKPRFTTLLMLKLTESGKKPFSLLLVLVFVGTLFVSAGIAIPSVTKYAKDNYFKKVNY FT NNQYEIYNSLSNSPLGKDVFNFWNGHEQIDNTYKEIKDSSGTINYYEDPNSYTLSNQNS FT SVLPQLIYKISTKDNNSNINSAEILTPYKSIIKEYLKTGVSDLYKNLLDWASYLISISN FT GKSISIGTIEQLYAYVLNDADLNERFKNDIDKVRETNNVTQPLTQFVGELLKTIFKEKI FT QNTGEWKEKILNLILGYSPSFIKSYLTSESRKNQLSFGWQKQTIIPQKDQLATIFKPKS FT NNIEADYSILGLDKNQQTYKLDDKQKNQLFLSNNNVQKLYKIINSPYDKNQNNDVYLNN FT FKVYDHKTNTLTIPTIVNKNLNYKLNKYGDSIISNLSTNNVQLSYKTRNGDFNVLPKQA FT WIYDDSDYLKTKYVNKHAKWEEQPIQFINTKDNYSSYGYEVVENNTEKYYYLNPYNLDV FT NKFTQRQVIDIWSKDSNNQIIAKQHEDIVDESPLFGDFVINNDAQIIKSFIRPYYQLRN FT LLLFIPITNEVSWEDFALYASGWNKSSEHNLDLKTIISDLDKNDDHTRNYKYPAIRKLE FT ADLVPNSVKNAWKSAISTIDNNTKYLAIRPYDFSIQQEKWSNNYYEYFILNDKKQIIGV FT NPHSADKAIPNLLLNSVPHFYRRAVGKRKNVPAIIQLHNKNVSYVNKDLKIKLQKVDDI FT DIYGKAYALVDSDLANMLYGFDISRSTNYNYKPFDTSKIIKKGELFNTYKTTNWLKVNN FT KDPWKQAFISQKDTFSYSPHYYYNTIFSNSSEPLIITSSVSLISEQRLGIAILDLMNLS FT DYKAGIVDVDFTFETKQLLNQIAKTAIYIAIIIITAIMLCASLLIMLITDIYISQYKSF FT MIMLRSMGYTNTQVMFYTLGVATIFSLLISFITTIIVFSSTTIIDKAFSANGFSIPINV FT YWISVVFCILLILVSFFSSLWVSTKRVRNAEPSTMLSEVDD" FT gene 22249..25407 FT /locus_tag="MCAP_0019" FT CDS 22249..25407 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0019" FT /product="membrane protein, putative" FT /note="MCAP_0019 has 1 membrane spanning region, FT N-terminal" FT /db_xref="InterPro:IPR012563" FT /db_xref="UniProtKB/TrEMBL:Q2ST96" FT /protein_id="ABC01836.1" FT /translation="MLKFIKNNKWWVAIISIFAIFFSSFGIFAKSYVDSNKQKIVNKIQ FT NYVQASSYAVRSRILKETENLNEDYLNEKIGKKPLLSEFNSDFIWRPNNSKTTSSDTIS FT DLWKTYFGSSNNVLNKDLQIQYKNNNEYKNIESSKGEITPKNIDFLLSISKSAEKFLNG FT FAPSLASLGLSFLQNKVLNNRDNPNFKKYKDGINKFADVIENNKDLFSYLGKLLTPKPL FT EKDYYKDLTVQQVLIKNINQIASAIADNKEFAKETEVDKLPEALDKILVELGLNSLDEI FT IAELINSKNGFENLGKIFSKIKNIFTSQNVQKLKVKGLELLDKITPYLATYLYSEIFFG FT LYYVAHEEIKNPNDLLVQKTDDSKFLILVNNKLDFNVLLNGLSKILKHKKNFERFYEFI FT FKRFDKNKIYNSVNDISSNNGVGNLVFDLINWLEKKLYNVSNTLKILIRFADIALKEPN FT IKKTIEEKIATLISTKLKELGNYFGEWKVSFVNGVLLISAGTAGFFSPSYFDAKIHLFD FT KEGIFKKLLNIINNLHSTIESFSSNISKYLKDILFLENKIFLDLSNISKMFLNITNEFK FT NLLGDKSTIYVYIKFLWVFNISINDIYDIFELPYKGSSLTRLVGLFAKDKIDPYLEKLK FT SVSQNLKKYKFINDETKIRDEFPKYLDKFSEYLKTYEKSENFKFNLIDSLYSGNLLLDF FT VSKWIDFILKNAEDKNNAVLPLVRIITKNENLESLKFIKDKWTSKVNKLANKVESFSNI FT SKIANTKIHLPEELLKQLDLENINNQSISQLLETLSNYFKDYLAKYPNKVIGFKLSNIG FT MILTALTIKVGVQYNSDNITKSFLYNKNPKLDKSKTILKALAYGFDTHDNSNDTNDIKN FT IRPKESYYNWDKIHFYINGSNEPYTIDRSTLKGDSSYSPLHMLLGINPDKTSYLKDSLG FT YVLGTLFGGLSASDENYNLSIENKTDVASILNVFNYVLDKKDKELKKQEEQIATKYYVK FT SAWSTKILSSNENEITYELIRLKTSDTRESKRLGTRFEVRLLKNKNNPYWSINRVIALG FT YKAA" FT gene 25583..26449 FT /gene="hslO" FT /locus_tag="MCAP_0020" FT CDS 25583..26449 FT /codon_start=1 FT /transl_table=4 FT /gene="hslO" FT /locus_tag="MCAP_0020" FT /product="33 kDa chaperonin (Heat shock protein 33 homolog) FT (HSP33)" FT /note="identified by match to protein family HMM PF01430" FT /db_xref="GOA:Q2ST95" FT /db_xref="InterPro:IPR016154" FT /db_xref="UniProtKB/TrEMBL:Q2ST95" FT /protein_id="ABC01567.1" FT /translation="MDLKIRAISNKYNLRISIVDVSETIKEIADLQQSNTLANMVFSKF FT ICCSTLIGMQFKNKEKTYVNWNAPDSLTKTMIAEYHDSKIRAYIQNKNVNISNFNNKDL FT NEIICLIASNKGDLIVSRDLNLKEPYVSNVEIEYGNIDYDFMKYFNQSNQTKSFITTEV FT KFDDNLEIKKVVGILVEMLPNHTKEDLDYISEKLGNTSYVKDVLVKSTNYYAIVKEIDN FT DATILDQSTISFECTCSYQKVLLILNLLNQNDLKDIIKDDKPVEVVCDFCNQKYNIQIQ FT DVLTLLN" FT gene 26497..27534 FT /locus_tag="MCAP_0021" FT CDS 26497..27534 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0021" FT /product="ABC transporter, ATP-binding protein" FT /note="This gene is not part of any apparent ABC trasporter FT cassette. The start site confidence is low; identified by FT match to protein family HMM PF00005" FT /db_xref="GOA:Q2ST94" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q2ST94" FT /protein_id="ABC01625.1" FT /translation="MAKDKKKTEVSEVSINIQQIQPISKSKKDDLEIVEKKKKLKPIKT FT ETFSSTQAGQREYIIIPNEQNFEPGIKGLKQKQKLQKQLTSKYSKDILNKEHIITTQNY FT KPDLNKHIIELKNVKKSYITGDLETPVLKGIDIKLDKSDFIVILGPSGSGKTTFLNIIS FT GLDKTSEGDVFVLGSNLSLLKDSHMTKFRRKTVGFVFQQYNLLTNLTAKENAEVGENLS FT SKKNGMSIDEIFETIGMKDQMNKYPHQMSGGQQQRVSIARALAKNPDILFADEPTGALD FT EEMGRKVLEILVKVNKEYKTTVIVVTHNPNIAKIANTVIHIKNGIIDNLEHNAHPADPQ FT TIEWA" FT gene complement(27586..28185) FT /locus_tag="MCAP_0022" FT CDS complement(27586..28185) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0022" FT /product="acyl carrier protein phosphodiesterase, putative" FT /EC_number="3.1.4.14" FT /note="identified by similarity to SP:P41407; match to FT protein family HMM PF02525" FT /db_xref="GOA:Q2ST93" FT /db_xref="InterPro:IPR003680" FT /db_xref="UniProtKB/Swiss-Prot:Q2ST93" FT /protein_id="ABC01323.1" FT /translation="MSKVLVLKTTAQADEVSNSVALTNRFLEEYKKFNPDDEIIIVDLN FT KDEVGTSILTSETFPTFYQQEVTKKYINLLKSVDKLVIACPMYNFSTPVTLKSFIDHVS FT VANETFSYKYSKKGDAIGLITNLKAQILGVQGAPLGWYPWGQHTQYVEGAMRFLGIEFN FT KTVLLAGVKVAPLLELTPAQRVETIIDEVIQAAKTF" FT gene 28374..28580 FT /locus_tag="MCAP_0023" FT CDS 28374..28580 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0023" FT /product="cold shock protein" FT /note="identified by similarity to SP:P15277; match to FT protein family HMM PF00313" FT /db_xref="GOA:Q2ST92" FT /db_xref="InterPro:IPR012156" FT /db_xref="UniProtKB/TrEMBL:Q2ST92" FT /protein_id="ABC01513.1" FT /translation="MSTGIVKWFNDEKGFGFITNDSDNKDVFVYFANINVNGYKTLEQG FT QKVSYELNKGIKGLEAFNVSITK" FT gene 28783..29196 FT /gene="rpsF" FT /locus_tag="MCAP_0024" FT CDS 28783..29196 FT /codon_start=1 FT /transl_table=4 FT /gene="rpsF" FT /locus_tag="MCAP_0024" FT /product="30S ribosomal protein S6" FT /note="identified by similarity to SP:P21468; match to FT protein family HMM PF01250; match to protein family HMM FT TIGR00166" FT /db_xref="GOA:Q2ST91" FT /db_xref="InterPro:IPR014717" FT /db_xref="UniProtKB/Swiss-Prot:Q2ST91" FT /protein_id="ABC01145.1" FT /translation="MIKKYEVMYILDQDLKDTKELVAKLDGILSEGGQILESNDLGLLD FT FTYEINHKKKGFYHIVIVQATTQAIKEFERIAKIDKNVVRTLVLNTQNIQNYEQSVVLS FT KTDMTKFEEEQREKKNFRKPFIKREEAATKENK" FT gene 29212..29652 FT /gene="ssb" FT /locus_tag="MCAP_0025" FT CDS 29212..29652 FT /codon_start=1 FT /transl_table=4 FT /gene="ssb" FT /locus_tag="MCAP_0025" FT /product="single-strand DNA-binding protein" FT /note="identified by similarity to SP:P37455; match to FT protein family HMM PF00436; match to protein family HMM FT PF01336; match to protein family HMM TIGR00621" FT /db_xref="GOA:Q2ST90" FT /db_xref="InterPro:IPR012340" FT /db_xref="UniProtKB/TrEMBL:Q2ST90" FT /protein_id="ABC01141.1" FT /translation="MNRVNLVGRITRDLELRVAKNGSKFVFFTVAVSEYSSREEKTNFI FT PCSAFDRTAENMVKFLSKGSLISVEGRITTRNNQTPDGRFETIVNVLAERVNFLEPAKS FT RNALMTEENDNLSPSQPTQENSDSSFDDLVVSDDDELSILWE" FT gene 29671..29898 FT /gene="rpsR" FT /locus_tag="MCAP_0026" FT CDS 29671..29898 FT /codon_start=1 FT /transl_table=4 FT /gene="rpsR" FT /locus_tag="MCAP_0026" FT /product="30S ribosomal protein S18" FT /note="identified by similarity to SP:P10806; match to FT protein family HMM PF01084; match to protein family HMM FT TIGR00165" FT /db_xref="GOA:Q2ST89" FT /db_xref="InterPro:IPR018275" FT /db_xref="UniProtKB/Swiss-Prot:Q2ST89" FT /protein_id="ABC01690.1" FT /translation="MQVKKIKKRKKVNFFQKNNIKYIDYKDVELLKKFISPNGQILPRR FT ITGTSLKDQRQLALAIKRARQMALLPYVIE" FT gene 30594..31982 FT /locus_tag="MCAP_0027" FT CDS 30594..31982 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0027" FT /product="conserved hypothetical protein" FT /note="Similar genes in other organisms are annotated as FT ATP-dependent DNA helicase recG; however this gene has FT insufficient similarity to any characterized protein to FT make that annotation. The ortholog in M, mycoides SC is FT disrupted; identified by match to protein family HMM FT PF04326" FT /db_xref="GOA:Q2ST88" FT /db_xref="InterPro:IPR007421" FT /db_xref="UniProtKB/TrEMBL:Q2ST88" FT /protein_id="ABC01253.1" FT /translation="MFSRESEKIEFKKSTAELKEAVISLCAMLNKSNGGTVYFGIKNDG FT TIIGQQIGKTTTTDIVNEIKNYIKPNVYPDIKVLEENGLSYISVEVHGTEKPYSAYRKY FT YIRVDDQDQVVDNNELRKLFLTNEFTNFNWEKLATKYGEEEVDEKLLISYIRKANELGK FT INFIFKSVKETLIKLELMENDKLNNAGYYLFSKNKPITIKLGKFLTDEKITLIDNIRFK FT GNIFECINKSIEYIINNINQVYVYKDLRRVPEPEIPIKAIREIVVNSFVHMRITNGDYN FT EVSIFPSEVRIYNPGHFPLNTTPSSFAEGKLSSKLINPLIATTLYKNNLVENFGTGFQT FT VFSLCNSENIKYSYDISNFGFTFSFYRRKTDDEFLNVQNNIKNLNSESSTKSESQTLLL FT TSLEEKILNYCDRNGKISSLTELADEFDMAWITMQRTVSKLVKKNILKRVGSNKIGYWV FT HIEK" FT gene 32257..33810 FT /locus_tag="MCAP_0028" FT CDS 32257..33810 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0028" FT /product="PTS system, mannitol-specific IIBC component, FT putative" FT /EC_number="2.7.1.69" FT /note="The Bacillus stearothermophilus MtlA protein was FT characterized and is 38% identical to this gene; identified FT by similarity to SP:P50852; match to protein family HMM FT PF02302" FT /db_xref="GOA:Q2ST87" FT /db_xref="InterPro:IPR013014" FT /db_xref="UniProtKB/TrEMBL:Q2ST87" FT /protein_id="ABC01170.1" FT /translation="MDSKIQINHKEWANKFKLKIQKTGSFMAGMIMPSIGILLAWGLWT FT AMFLYDFDHNKKLGWFDAPMLGRLVEPGIKWLLPILIAFNGGRLVYGLRGGMIATFIIV FT ATITGTDYIYGHYILQKVGDKWVHPGSPNQFIGAMIVGPLSALFLKKVEKLYLHKINPG FT LEMLVKNFGLAIYAIVLGLGLFWSWGWIMWGITFVMISIIKLFGDNKWVAPLLGLFTEP FT IKVSFLNNALNHGVLGPIGYNEIQIQRSNGVANPRSIFFLYDPNPGPGLGLLLAYIIFT FT KKEDRYNATASSLIHTIGGIHEVYFVFIIKKPKMLLATMLGVVGAQFITSYLGGGTIGT FT PSPGSLISLIALSNGTHALLINLLAFVVGTLIAFGISVLLLLKDKKHLQTESNQGFKIT FT DEGIEFSNNKNQEEKINNSDIKKIVVACEAGVGSSAMAAGLIRKWVNNNNYDIQVTNLA FT VKDLKDEYDVVITMKSFKDFAQQKAPSAYIYPVEQFIGKNIYDDLYKMIKNKQEIREGK FT " FT gene 33810..34568 FT /locus_tag="MCAP_0029" FT CDS 33810..34568 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0029" FT /product="oxidoreductase, short chain FT dehydrogenase/reductase family" FT /note="identified by similarity to SP:P05707; match to FT protein family HMM PF00106" FT /db_xref="GOA:Q2ST86" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q2ST86" FT /protein_id="ABC01820.1" FT /translation="MKKVAIIAGGAKSLGKFLALGLDKNNYQVIVLDVNKQKLDELKLE FT NNQIDTFECDLTNEIDVINVFNEIENKYKTIDTLVYNAGWAKSAKITSFEYQDFITSLK FT INLDGYFLTAKQAAKIMIKNNTKGNIIQINSKSGRVGSKYNSGYSAAKFGGVGLTQSLA FT LDLAEHNIRVNSLMLGNLLDSEMFESLIPQYAKKLNIKESEVKQYYIDKVPLKRGCSFD FT DVLNVLLFYISLKASYCTGQSINITGGQVM" FT gene 34568..34813 FT /locus_tag="MCAP_0030" FT CDS 34568..34813 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0030" FT /product="PTS system, mannitol-specific IIA component, FT putative" FT /EC_number="2.7.1.69" FT /note="identified by similarity to SP:Q45420" FT /db_xref="GOA:Q2ST85" FT /db_xref="InterPro:IPR002178" FT /db_xref="UniProtKB/TrEMBL:Q2ST85" FT /protein_id="ABC01746.1" FT /translation="MLKKENIFLNQKFKTKQECLDYLKSIFKKENIDDRYIESINLREQ FT VCSFNIGSKIAIPHGTYDGMLYLKDSLIIVYIYKNQ" FT gene 35027..35824 FT /locus_tag="MCAP_0031" FT CDS 35027..35824 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0031" FT /product="phosphosugar-binding transcriptional regulator, FT RpiR family, putative" FT /note="This is a weak hit to the rpiR transcriptional FT regulator family. The gene is adjacent to mannitol specific FT PTS system genes and genes for manitol metabolism; FT identified by similarity to SP:P37767; match to protein FT family HMM PF01380" FT /db_xref="GOA:Q2ST84" FT /db_xref="InterPro:IPR001347" FT /db_xref="UniProtKB/TrEMBL:Q2ST84" FT /protein_id="ABC01658.1" FT /translation="MSIDLLTKIRDLIQTDCNQDYKNIGAFLLKNYSNIRSLTITKISK FT ECNTSPTQITRFAEKLNLKGFSELKYRLDDISKSIIIDNQFIPISSRIDDKTKFYKDYF FT EILNNSIKQQEANLKNLPINEVANLISKANKVYLFAFNLSYNISKNFIQRLRWYQKDAI FT SESDYISIKTYINIIKPEDLVILITISGENEYIKNIAESLNRKVKIVGIGPKQSSMINL FT FDKYLYFQTDESELWSINSIKAQLTVQLLDFVYVKWLKSTKKK" FT gene 35825..36829 FT /locus_tag="MCAP_0032" FT CDS 35825..36829 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0032" FT /product="mannitol-1-phosphate 5-dehydrogenase, putative" FT /EC_number="1.1.1.17" FT /note="identified by similarity to SP:P55800; match to FT protein family HMM PF01232; match to protein family HMM FT PF08125" FT /db_xref="GOA:Q2ST83" FT /db_xref="InterPro:IPR013328" FT /db_xref="UniProtKB/TrEMBL:Q2ST83" FT /protein_id="ABC01564.1" FT /translation="MKLIHFGAGNIGCGFIAPILKSVVSHIYFVDNNIKIVNKINNQKL FT IKIYTSNNKNIEITNIGAWLLNDFYNYQNHWDQVSLITISIGVNNLKHIISYVQKIIDY FT KVRKNQKLIIMCCENGIRISSLFKTNFNNISSNIYFVDVLVDRIVSNKNILNNYLECED FT YYLWIVDKTQWPNSFKQIDSLTYRDDFDLQIAKKIYMLNGLHCSLGWFVFKNFGFNKYL FT YVYQAMKNSQVIEFVNNYLNEVILVLNHKYNINLKELSEYKDRIVKRLSNNFIKDDFKR FT LVRNTELKLSKNERILTILDYAKAHNLKHNTLLLSYQNGLEYLKIEKEKNLDF" FT gene complement(36866..38458) FT /locus_tag="MCAP_0033" FT CDS complement(36866..38458) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0033" FT /product="lipoprotein, putative (LppA)" FT /db_xref="InterPro:IPR019992" FT /db_xref="UniProtKB/TrEMBL:Q2ST82" FT /protein_id="ABC01114.1" FT /translation="MKRTTKLLLSILPISSISLLSLVSCSTTSLNGKQPNEKPANPNEK FT EPNNEIDKKPIKPEDSNYKDPNKPSNKPNETPKEPEQSGNDSEKDPKKPDEKSQGDQPH FT NNQSSDQPETNKVDFSDIENILKEISLKTITFYAQRDAATVLFELRKDHSIIDRIFSKE FT FKDIFDKYYIQFVPNSGENAINEKGLIEKIKLKFTNKKGGASKDFKFTFTGFKIPETIN FT TKNNKYNLLKQKSVNETLAGLFPSLIAYMLLYSQNHNEYKSLEEKDNAINFEELENGNP FT DLFIDPSLRLNAAAIKDYLFEYDKKLGELYIDKVTTVSYDDYNGSLGLQVEIGNRDHNS FT RTSNEPTISVKHTFNGFRKVDLTDQNKNVLSLFLPQNKFKEMTKKGPLKNKIQNIKKEN FT KLDNKYLIKDMSNMYLKQQIFKELLVGIYDNANKAYKSTSTLGLQTKEYRSILGLAGGM FT SIYPFHTRITKDSIENIYLSISKEENSKYKAKLEFEVHIPIFASSFSDLKSHSTSGESK FT VLVFKIVSDTSVD" FT gene complement(38483..40042) FT /locus_tag="MCAP_0034" FT CDS complement(38483..40042) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0034" FT /product="lipoprotein, putative (LppA family)" FT /db_xref="InterPro:IPR019992" FT /db_xref="UniProtKB/TrEMBL:Q2ST81" FT /protein_id="ABC01414.1" FT /translation="MKRTTKLLLSILPISSISLLSLVSCSTTSSNNKKPEENRTDKTPE FT KLPENSKKPENAEPNDQHEPSKSDSEKKPDASDNKNNIKPKKPDSERENTDQPQADQPN FT HHNVDFSDLEKIKTKLSYKSIKLYSDKDPRSAWFSLKNDLETFSNIFYRENKDLKNKYN FT LSFENNEPIYDFLKGVIDNVKVKFTNNKHSKIISFTLTDFKKTNTTTNNKENYIKEKDE FT LDNKFKGLYPSLVAFMLLYSEDPQSYKSLEQRTQAIGFEDLYYSNRNLFNNEYPGINQV FT TKKLLLEYNYDLSKIYKDRIIQAKFDDTKGTLGVKIEISNNQTEPKITKEPTLIKEFNI FT KGFRSIDFKDENKNVLSMTLLQSNLKEMIKKGSLKKTVELLRERNNSFGVKMPLEQVEG FT TRLKDELFKYLLVNVDDNSYHIYNPKQTLSLQKNSKNDNTSILGLAGNMSIYPFHTRIT FT KESINKIFITLAKEDDGKLKVTIDFEVIIPIYSVGYSDLKSPGTGASIPLTLKVNSSAL FT ID" FT gene 40240..41769 FT /gene="metG" FT /locus_tag="MCAP_0035" FT CDS 40240..41769 FT /codon_start=1 FT /transl_table=4 FT /gene="metG" FT /locus_tag="MCAP_0035" FT /product="methionyl-tRNA synthetase" FT /EC_number="6.1.1.10" FT /note="identified by similarity to SP:P23920; match to FT protein family HMM PF00133; match to protein family HMM FT TIGR00398" FT /db_xref="GOA:Q2ST80" FT /db_xref="InterPro:IPR014758" FT /db_xref="UniProtKB/TrEMBL:Q2ST80" FT /protein_id="ABC01819.1" FT /translation="MSKKFYITTPIYYPSGNLHLGHAYTTTLADILNRYKKEQGYETFF FT LTGSDEHGQKIENKAKEANLTPLEYLNPKVQAFKDLWTKLNIDYDKFIRTTDDYHQNTV FT QKIFTILLEKGYIYKGQYEGIYCVSCEEFLTNEQVDENGLCKISNTKPQLVNEDTYFLK FT VSQFQEFVQNILKSDFLIPEYRRNEMLKNFVEPGLKDLSVTRVSFKWGIPITQDEKHII FT YVWLDALSNYITALGYLQKDDSLFKKFWQNDDCEILQLAGKEIIRFHSIYWPVMLEALN FT LKQPTHLLGHGWILNKNTKMSKSLGNVIDPVKIIELYSADALRFYIANDLPTEKDGNFS FT LELFIESFNAHLANNVGNLISRTHNMISKYFNGYIDLNNVNYDQELIDLGIKTIDNYIF FT NMDQYKISEAIKAVLELSNACNKYIEVKTPWNLEKENKIEELKTVLSTLQRNIAIISYL FT LKPVLVDSYNDMIEQCGLENVDINFDNLKTFFNIKFNKLDNKKVIFNRIKD" FT gene 41953..43596 FT /pseudo FT /locus_tag="MCAP_0036" FT /note="contains inframe TAA stop codon after amino acid FT 202; This codon has been shown experimentally to be a TGA FT Trp codon in other isolates of M. capricolum subsp. FT capricolum, GM262G; This codon is also annotated as a Trp FT codon in the orthologous ORF in M. mycoides subsp. mycoides FT SC PG1 [MSC_0011].; lipoprotein putative, authentic point FT mutation; this gene contains a premature stop which is not FT the result of sequencing error" FT gene 43614..45221 FT /locus_tag="MCAP_0037" FT CDS 43614..45221 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0037" FT /product="ABC transporter, ATP-binding protein" FT /note="This is part of a two permease, one ATPase ABC FT transporter cassette. Both permeases have significant HMM FT socres for PF02653: Branched-chain amino acid transport FT system / permease component. The best BLAST BER hits are FT two genes annotated as sugar transporters. Thus we cannot FT predict a substrate; identified by match to protein family FT HMM PF00005" FT /db_xref="GOA:Q2ST79" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q2ST79" FT /protein_id="ABC01656.1" FT /translation="MNKEKEVNYAIEMQNITKTFLNGSIVANDDITIRVKKGDIHALVG FT ENGAGKSTLMSILFGLYQPTSGIIKVNGKEEIISNPIKANKLGIGMVHQHFKLVEVNTV FT LENIILGVEQTKGKIFLNKAKMRAELIEIMNKYDLYVDLDAKIQDISVGLQQRVEILKI FT LYRKADVLVFDEPTAVLTPQQIQSLLQIMKNLQKAGKTIIFISHKMDEIKEVANVATVI FT RLGRKITDLQVSEVSGNEIAEAMVGRKLVEVKNKYKKVSSEEPLLNVINLTVKKDSNHK FT VYGLETFNVKVRPGEIVAIAGVEGNGQRELIQAITGLVKPVSGGIVYKKINIANSSIKT FT RYDMGMSHIPEDRHKHGMLLDFLVEENIVSQEIDKKPFSQFGFINKKAISRYAQTVIKE FT FDIRGSRNGTAIARGLSGGNQQKAIVGREIKREHDLLIVVQPTRGLDVGAIENVHSQIL FT KEKERGRGILLVSYDLNEIMALADRIVVINDGKLIGELPAKRAKKEEIGALMTGQTLEQ FT IKNNKVNKNSKVVVENEI" FT gene 45211..47769 FT /locus_tag="MCAP_0038" FT CDS 45211..47769 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0038" FT /product="ABC transporter, permease protein" FT /note="This is part of a two permease, one ATPase ABC FT transporter cassette. Both permeases have significant HMM FT socres for PF02653: Branched-chain amino acid transport FT system / permease. component. The best BLAST BER hits are FT two genes annotated as sugar transporters. Thus we cannot FT predict a substrate. This protein has a long COOH domain FT with no TMHs, and may serve as both permaease and FT substrante binding domain; identified by match to protein FT family HMM PF02653" FT /db_xref="GOA:Q2ST78" FT /db_xref="InterPro:IPR001851" FT /db_xref="UniProtKB/TrEMBL:Q2ST78" FT /protein_id="ABC01285.1" FT /translation="MKSRILWTLNKKAKYLFSSDQTKTKLKFIKGSLFSIIMGFIVSGV FT FLSFLKINPFTYFALLFGINFDKNFYQISLNWMAVYIVAGLSMAVAFKSGVFNIGAPGQ FT ILTATSVSTILFFYIKGSKAATIDGSMIILMLITCIVSASFLALIAGALKALFNIHEVV FT STILLNWSVFYIFKWFFNRFKDFSGGLSFTSKNIPSDQLVIGSNTVIVPLLIALICVIL FT VWILFSKTTLGFKLKAVGSSITGSKYIGINVKTQIISSSALSGAIAGIAGFILIFTVTP FT NNFFASNSLPTVGFDAIAVSLVAFNNPIGIIPIGWLWAVIKTGGGPVSSLYGISTQISG FT LISGVLIYFTAIVSIFIVFKPWELLKNKFNLLTSPICREIFWKLYLYLLKLRFKKIFLI FT FIKEYKQQVNDSYKNYVVKNKIKKQMQLPHLFWNGRKNIKLEFKKDINQLIYLIKNKIV FT DIKAFVKEDKTRLSVNGLKTNLKEQLNLITTKFVLKSYDLDLKLADHKYKITQVKQNIL FT NKYQSDIKQIKKEHKLKIQEIKVFKEAQIGVLFHEFQYRDNIIEIKANKLKTIALLNEQ FT IKNIKSKFNLQKENLKLNKNLYDNKHLEQINKIKEEIKEVKKQTSVKLLEEKNKFKTQK FT ENVKKEKVQLQTILEQYKTYLKEEKQRFIQAKKQALVNKHKRLEFIDMNRSKLEVNKTI FT VLLNDLKTLVMTNIDKNLNRQAIKSNDKTLIKALKIKSQIDEIFGSNIISEYDAPEYIK FT QKVKISLKTFKLIIILEKQISYTNCRVEEQELINNYKTWIDKANQIIDKDKQQYLLAIK FT QQPRETLTDLEQLFNLEKTLKQQTNLKIMNLEKSVLKEVK" FT gene 47772..48749 FT /locus_tag="MCAP_0039" FT CDS 47772..48749 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0039" FT /product="ABC transporter, permease protein" FT /note="This is part of a two permease, one ATPase ABC FT transporter cassette. Both permeases have significant HMM FT socres for PF02653: Branched-chain amino acid transport FT system / permease component. The best BLAST BER hits are FT two genes annotated as sugar transporters. Thus we cannot FT predict a substrate; identified by match to protein family FT HMM PF02653" FT /db_xref="GOA:Q2ST77" FT /db_xref="InterPro:IPR001851" FT /db_xref="UniProtKB/TrEMBL:Q2ST77" FT /protein_id="ABC01174.1" FT /translation="MSILFNSSILTWGLALVGVLLFASLSSLVSEKAGVVNIAVEGMMI FT IGALVVSILGTYLTTNDQKSNYTQIPIVLLAGVITAIFALLHAFPSITLKANQIISGTA FT INILTIGLGIFLSTSNWFGKQSQVIASGYTSINVINITKTVGSKTQVVASMLPIWTTIA FT IILAIGLFVFFKYTKQGMRYAMVGENPNAIDAAGISVTKYRYVAVILSGFLAGIGGGVF FT VVTTVSGGGLFSGNIFGYGFLGIAIMIFGQWRILFITIGAIIFSWLFALGQQIGTISTN FT KTIQSISILFNTLPFILTIVAMVLFSKTSKAPAAVGIPFDKSKR" FT gene complement(48817..51204) FT /gene="gyrA" FT /locus_tag="MCAP_0040" FT CDS complement(48817..51204) FT /codon_start=1 FT /transl_table=4 FT /gene="gyrA" FT /locus_tag="MCAP_0040" FT /product="DNA gyrase, A subunit" FT /EC_number="5.99.1.3" FT /note="identified by similarity to SP:P05653; match to FT protein family HMM PF00521; match to protein family HMM FT PF03989; match to protein family HMM TIGR01063" FT /db_xref="GOA:Q2ST76" FT /db_xref="InterPro:IPR013757" FT /db_xref="UniProtKB/TrEMBL:Q2ST76" FT /protein_id="ABC01443.1" FT /translation="MSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSARIV FT GEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARLAK FT ISNYLIKDIDMDTVPFIDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNLK FT EVVSAINAYIDNNDITIDEILDNHILGPDFPTGALMTNGSKMREGYKTGRGSVIIRAKI FT DFEENKKHDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIEL FT KKDANPDVVLSKLYKYTALQSSFSINLLTLNNNLPVLLDLKTIIKNYVEFQVNVIIKRS FT IFEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTSEEAKIQLTNKYNFDEEQNKAIL FT DMRLQRLVGLERDKITLEMTNIKERLTYLDILINTKEEQNNVLKNQLNEIADKFGDNRR FT TELIDEELINIEDEELIPDLKWMILLSQEGYIRRINPDEFRIQKRGGRGVSVNAEPNDP FT IDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFLNDLTSEDKITAIL FT PLRNNKEKFNYLTFVTQKGMIKRTKISEFENINRNGKKAINLRENDQLVSVFATTGQDT FT IFIANESGKVIRIKESVVNPQSRVGSGVRALKLETNDVVVGAISSFKLTHITTVSNKGL FT FKKTPIDDYRISGRNGKGIKVMNLNQRTGKFKAIIDARETDLILIISSDGNLIKTKVSN FT IPSLSRNASGVKAIRLADNQEINAITLEYRKHGLENEDFEED" FT gene complement(51336..53240) FT /gene="gyrB" FT /locus_tag="MCAP_0041" FT CDS complement(51336..53240) FT /codon_start=1 FT /transl_table=4 FT /gene="gyrB" FT /locus_tag="MCAP_0041" FT /product="DNA gyrase, B subunit" FT /EC_number="5.99.1.3" FT /note="identified by similarity to SP:P05652; match to FT protein family HMM PF00204; match to protein family HMM FT PF00986; match to protein family HMM PF01751; match to FT protein family HMM PF02518; match to protein family HMM FT TIGR01059" FT /db_xref="GOA:Q2ST75" FT /db_xref="InterPro:IPR006171" FT /db_xref="UniProtKB/TrEMBL:Q2ST75" FT /protein_id="ABC01338.1" FT /translation="MSQEYSAESIKVLKGLEAVRTRPGMYIGSTSKTGLHHLVWEILDN FT SIDEAMAGYADLINVTITKENEVIIQDNGRGIPVGINSDTKKSALSLVFTQLHAGGKFD FT SETYKISGGLHGVGASVVNALSLYVEVEVYRNNIHYHQLFSEGGTKESELQQLGHTDLR FT GTKVKFKPDPEIFKETVVFDYEVIKNKVKQLAFLNKGLKITLTDERIEKTVEYLFLNGI FT LDYIKEKNETKNKINPNIFYVDSKYEDIEVEMALQYNSDYQENIITFVNNINTHEGGTH FT EDGLKQALIRDINRYADTVIKNNKTPSKFSWDDIKEGMMCILSVRHTDPQYEGQTKTKL FT SNPDAKEAVNIIIGNAFEEFLLKSPEDAKAILDKNVNAQKARIAAQRAREETRRKSALD FT SFSLPGKLADCETKDSNIAELYLVEGDSAGGSAKTGRNRKFQAILPLRGKVLNVERVTE FT ARAFSNNEIKSIVTAVGTGIKEELDLSKLRYKKIVIMTDADVDGAHIRTLLLTFFYRYM FT KPLVANGHIYIAQPPLYKIEAGKKIAYAYTDNQLDELKNNEFNNLKYTIQRYKGLGEMD FT PLQLWETTMDPQQRTMLQISLEDATLANEVFSDLMGEDPELRKIYIQDNAKFVENIDF" FT gene complement(53640..55241) FT /locus_tag="MCAP_0042" FT CDS complement(53640..55241) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0042" FT /product="lipoprotein, putative" FT /db_xref="UniProtKB/TrEMBL:Q2ST74" FT /protein_id="ABC01084.1" FT /translation="MKKLLTILSSLIISTSTAALVIACNNTEKPAQDKPTNQTKPINPT FT DPKTPDSKSKDESNESTKPQNTTPKKPIPSNATAKWNSIFSDSPTGDDINLNPSSEAIE FT KENMRLEAIAKEKIKEAKERNLNIHKQNIYVLENEIIDLKSKRFVIGNEYSKKEKELEE FT KTKKILIEAENNLKTNKEVLDSKKQVNEHKLNYLKKEVFGKDNIRDKVKKTKENLKELK FT EWLVEAKELVKEYTQEESKHNEKVLKATDLQNNISKIISELNDTRKLAESISEIETKIQ FT SVEDSFKKEIDETKKWLPELDAEDKKIKEMKKELLSTYDVYDSFVYNNRIENAFQLEYI FT TSLDDDIKNNAETRKFIEELQSELEKIKKSLIEELKIKKDKADQAKNKVSSLEASLKEM FT MSEKNELDTELNKINNEIVKIKRDLADFRNNALDLEEEIEKTTKIETKLSKELNEYETD FT LVKLSDEKAQIEKELDDLEKNTEKTISEAMSNFDEQSQNLDKEAYEKEKSIDLQISELE FT KLITKTKEVISEIEKQ" FT gene complement(55409..56182) FT /locus_tag="MCAP_0043" FT CDS complement(55409..56182) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0043" FT /product="membrane protein, putative" FT /note="MCAP_0043 has 6 membrane spanning regions; The most FT N-terminal, signal peptide sequence is autoannotated as FT having a lipoptrotein motif, but it is atypical of many FT LPs. The orthologous gene of M. mycoides subsp mycoides SC FT is annotated as a membrane protein." FT /db_xref="UniProtKB/TrEMBL:Q2ST73" FT /protein_id="ABC01122.1" FT /translation="MLKRFKEFQKQRNFKLELIISSLLLFFAISCLALYFITKSLGLYH FT KKTLSADVIFLQDITFLSEWYAVFVMIFCSLKISRMLTTKQIFIYKYTEYSFTSWSIFI FT FLLYIAGFIMGQAIINDDKDFPTLYRALTIHVIIPIIWVTYFILFPLNDQKTKKQIWLG FT TLQTFSILCFYALWLLLRLLPGINLDDKIWVDKIPYSFISPYNIGVIKYILVNIGIFGV FT FISGYIFTYYLNKFFYKKITTNKQKLDKSEKIITK" FT gene complement(56166..56888) FT /locus_tag="MCAP_0044" FT CDS complement(56166..56888) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0044" FT /product="membrane protein, putative" FT /note="MCAP_0044 has 6 membrane spanning regions" FT /db_xref="UniProtKB/TrEMBL:Q2ST72" FT /protein_id="ABC01400.1" FT /translation="MKMQKRTIKSDIVFYSIILILNLITNFIYWITHAFNIVYVEEPTN FT LDIILALDSSSIAIWGLWICTFYAGVCLYNAFIRKQLYQAQLLELFIISMLISTGLIFI FT GISIINKTTHISNWSALLRVINVHFLLPISMLLYLIFFRTNMIISKKSRLIGMWRILAV FT GLCYISWITYRTAPEVQVNLIDKPFLYTSLQPSNIGWAIFISLSFSSFILYFFVYLLLT FT WINNIINNKYGGSDAKTI" FT gene complement(56998..59832) FT /gene="secA" FT /locus_tag="MCAP_0045" FT CDS complement(56998..59832) FT /codon_start=1 FT /transl_table=4 FT /gene="secA" FT /locus_tag="MCAP_0045" FT /product="preprotein translocase, SecA subunit" FT /note="identified by similarity to SP:P28366; match to FT protein family HMM PF00271; match to protein family HMM FT PF01043; match to protein family HMM PF07516; match to FT protein family HMM PF07517; match to protein family HMM FT TIGR00963" FT /db_xref="GOA:Q2ST71" FT /db_xref="InterPro:IPR011116" FT /db_xref="UniProtKB/Swiss-Prot:Q2ST71" FT /protein_id="ABC01329.1" FT /translation="MVSDRRLLKKFGKIADRIIALEPQMRQLKDEDFLLKTQEFKQMLE FT NGKSLDDILIEVYAVAREAARRVLGLNAYKVQLIGGIILNSGDIAEMRTGEGKTLTGIF FT PAYLNALTQKGVHIVTVNEYLSRRDSEINGKVFDLLGISVGLNGSSLSKAEKREAYSKD FT ITYTTNAELGFDYLRDNMVSDYSLKVQRKLNYCIIDEADSVLIDEARTPLIISGGTSTR FT INLYKAANNFALSLKEHDDLDIDLESKQVYLNEQGMKKANEFFSLKNLFAIENTEIFHL FT IMNALKAQFAFKEGVEYTVRDNEILLIDQFTGRIMHGRSYSDGLQQALQAKENVDIEEE FT TVTLATITYQNFYRLYSKIAGMTGTAKTEEEEFIKIYNTRVIQTPTNKPVIRKDEPDLT FT FGSKNAALKKLVEDVKETHQKGAPILIGTTSVESSEQIARYLKKANLKFETINAKNHDR FT EAEIVAKAGEIGAITLATNMAGRGTDIKLAKGVSELGGLRVFGVERNEARRIDNQLRGR FT SGRQGDPGLSRFYISMDDDLMMRFTAPKTRQRFKALGDDYIKSKMFTRAVTNAQKKLEG FT MNFDQRKNVLDYDNILAQQREIIYAQRDDILEANDLSIVIEKMQITAAYELIEKHSTLV FT HGEKTINKKELLEVIDGVLVPKNKFRIDDFNNKEKMDLAVEIAEAMMQLYKARISDIPE FT DVVIGMERKIILDAFDKYWTKHLDIAGKLKSGIYLQQYAQNNPLAIYVEQATDLFNKMK FT INIANDVVENLSNVILKVVEDEEKREERIEVTDKDIEEILLETGLETSDINNKAINKRF FT DELEEKFKDDKQKLKRLRIQRDVMLGLVLELERRAEMIVSPENDQLAITQLIKELQNDI FT DIASITVEQIHQNFNNMVEKINDPEKLKHLVIAKDVLLQLVARMDDIKEQEKQTKKKKK FT KKPHDDETTKVKIG" FT gene 59912..60487 FT /locus_tag="MCAP_0046" FT CDS 59912..60487 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0046" FT /product="conserved hypothetical protein" FT /note="identified by match to protein family HMM PF01205" FT /db_xref="InterPro:IPR001498" FT /db_xref="UniProtKB/TrEMBL:Q2ST70" FT /protein_id="ABC01631.1" FT /translation="MKTINKEIYQNEFIIKNSKFKTIATNINSKKELEEFLNKYSDLNA FT SHNCYAYVIYDQKLIGGYYDDHEPKNTAGKPIFSVINKNELVNIVILVTRYFGGIKLGA FT SVLSRTYSNAASMILKNIKFLEIKTYYIYQISFDIKNIKLVNHWINLNNLEIISKEFNL FT NVVYKLQASSKINEQNFFKIIDLKIIKK" FT gene 60583..61497 FT /locus_tag="MCAP_0047" FT CDS 60583..61497 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0047" FT /product="5-3 exonuclease family protein" FT /note="identified by match to protein family HMM PF01367; FT match to protein family HMM PF02739" FT /db_xref="GOA:Q2ST69" FT /db_xref="InterPro:IPR020047" FT /db_xref="UniProtKB/TrEMBL:Q2ST69" FT /protein_id="ABC01514.1" FT /translation="MITNETKPILLIDGYHLLHKGYYGTLKRKKVSKNKDGIIINAIYS FT FVANILKFINSDQYHSVIVAFDVDDNCWRKQIYPEYKAKRKPTPNDLIPQLQIARDFLI FT ASNITWYEKSNYEGDDIIGSICKIANKLGYEVQILTNDKDIYQLVNQKTSIITNVSKKE FT KTKIIREKEVYEHFLCKPNQVADIKAILGDQSDNIKGIKYIKRKQAEALINKYENVENI FT LDHINELNEPLKTIISENKQLIIDNKKITKILTNVKLGRINFKSNKVTYYKLIRFLKEQ FT EMYAFIRPIRKYLEKSNKKTVNK" FT gene 61692..62708 FT /locus_tag="MCAP_0048" FT CDS 61692..62708 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0048" FT /product="adenine-specific DNA methylase, putative" FT /EC_number="2.1.1.72" FT /note="Part of an apparent operon containing another FT adenine specific methlyase and a IIS restriction FT endonuclease; identified by similarity to SP:P14871; match FT to protein family HMM PF02086" FT /db_xref="GOA:Q2ST68" FT /db_xref="InterPro:IPR002294" FT /db_xref="UniProtKB/TrEMBL:Q2ST68" FT /protein_id="ABC01801.1" FT /translation="MRLTSRRYIGSKAKLLDWIFSNIDNNVKGNSFFDIFAGTGCVIEK FT ALTSYDSVIINDILSSNKVVYDAFWGDIVIDIDIINKYKLIFNSLDSIIDHNYFSINYG FT GKYFGVNDSKKIGYIRELIENDFKNNYINKREKNILLASLIYSIDKIANTVGHYEAYRK FT IEITDNRFKFDLIDIPNKNVNKKVEIYKEDANRLARKIYSDIVFVDPPYNSRQYSRFYH FT VIENLVEWKKPELFGIALKPAPQNMSEYCRNNAPAVFDDLISNLNCKYIVVTYNNTYNS FT KSSSSKNKIKLEEILNSLNKRGKTQIFSSDHRFFNAGKTSLSNHKEYLFITEVTCEK" FT gene 62638..63615 FT /gene="dam" FT /locus_tag="MCAP_0049" FT CDS 62638..63615 FT /codon_start=1 FT /transl_table=4 FT /gene="dam" FT /locus_tag="MCAP_0049" FT /product="DNA adenine methylase" FT /EC_number="2.1.1.72" FT /note="Part of an apparent operon containing another FT adenine specific methlyase and a IIS restriction FT endonuclease; identified by similarity to SP:P00475; match FT to protein family HMM PF02086" FT /db_xref="GOA:Q2ST67" FT /db_xref="InterPro:IPR012327" FT /db_xref="UniProtKB/TrEMBL:Q2ST67" FT /protein_id="ABC01082.1" FT /translation="MRAKPVYLIIKNTYLLLRLLVKNNIRSPFFYVGDKYKIMPQIVKF FT FPEKINNYYEPFLGGGSSVMHTKANKYFLNDINKSVIDLHKCLSSYSKNKNLLLNSLFK FT LIKKYRLSCSYLSITVPDELKKKYVKTYYSKFNKKSYIELRNDYNKKSDNLKLYLLLIY FT GFNHMIRFNQQGKFNLPVGNVDFNKNVYQALITYLEFVDDKRIEFSNNDYIEFIKKIDF FT KEGDFVYLDPPYLISNSEYNKNWTMIDEQNLYDLIDNLDRKKVYFGLSNMLTHKGRKNY FT LLEKRMKKYYIHEIKSNYISRFDNKIKKDSKEVYITNYEKNRRT" FT gene 63593..65170 FT /locus_tag="MCAP_0050" FT CDS 63593..65170 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0050" FT /product="restriction endonuclease" FT /note="There is high identity to a Helicobacter pylori IIS FT restriction endonuclease recently characterized. This is in FT an apparent operon with two likely adenine specific DNA FT methylases; identified by similarity to GB:BAD00171.1" FT /db_xref="GOA:Q2ST66" FT /db_xref="InterPro:IPR018573" FT /db_xref="UniProtKB/TrEMBL:Q2ST66" FT /protein_id="ABC01183.1" FT /translation="MRKIEEHKPISFSTTMRNPERMSQFIACMKDFEGHILTDELIMQI FT VRKVIKNKLYKPNYIKENCTINNIYNDESLTFSNVQLDDIVNNSPQNHKEAGFTKGWSS FT RFDTWYKLCKEFGFIYYDMNKKIEVSSSGHMLCDAYLANSKNEDLDNSGKRIQKIFLNA FT LMKYQTNNPFRRNLNQNSPIPLLLNVLNLLSLNSRSTGLHRREIPFLMCWENNDYKQLY FT EFIINFRNKYGFKASDEIIYEECLKLLKSSNKKRFKMSQIMKESVDDFIRKLRITGIFS FT LRGLGRFVDINKLEIESVDYIIKNYTKYNIFSNEYDFYKYMSEIDTKILEFQEIANTEI FT NNIRMKTLREISQKYSVEQIYKELRNLQLNKNSEDEYFKLIDSPTRLEFLTSIAIIQKF FT PQYEIHPNYSIDDEGNPTFTAKGGVADIEIYDSSLNSIVEVTLMKSRQQAASEIPAITR FT HLKKQRDDCGNKNIFSLFIAPNIHEDTVYMCQFTRYKENLGIYPYTIVDFVQKMQTTNS FT LLELEYEI" FT gene 65160..66642 FT /pseudo FT /locus_tag="MCAP_0051" FT /note="MCAP_0051 contains a confirmed frameshift around FT amino acid 215.; USG protein, authentic frameshift; this FT gene contains a frame shift which is not the result of FT sequencing error; identified by similarity to FT OMNI:NTL01BB0480" FT gene 66644..67114 FT /locus_tag="MCAP_0052" FT CDS 66644..67114 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0052" FT /product="hypothetical protein" FT /note="identified by Glimmer2; putative" FT /db_xref="InterPro:IPR015032" FT /db_xref="UniProtKB/TrEMBL:Q2ST65" FT /protein_id="ABC01483.1" FT /translation="MARKVFFSFHFENDVWRANQVRNSWVTQGTQAAGYIDAAEFEEIK FT RSGDRAVKKWIDEQLFGTSVTVVLIGSETLDRPYVRYEIEESIKRGNAIIGIAIGDLLD FT QNKKTSFSKISSYAINGKSFLDIANGFYNYKRDDGYSNMGIWIENAARSKGK" FT gene 67839..68114 FT /locus_tag="MCAP_0053" FT CDS 67839..68114 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0053" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q2ST64" FT /protein_id="ABC01824.1" FT /translation="MSYYYRHNFSFSYHGLQRAKERLKLKDKKDYEVKEICLEHIRNST FT KSFISGNEIYISASNTNIFFVVNKTNNLIITVTEISAEKQLRMYGI" FT gene 68104..68670 FT /locus_tag="MCAP_0054" FT CDS 68104..68670 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0054" FT /product="dephospho-CoA kinase" FT /EC_number="2.7.1.24" FT /note="identified by match to protein family HMM PF01121; FT match to protein family HMM TIGR00152" FT /db_xref="GOA:Q2ST63" FT /db_xref="InterPro:IPR001977" FT /db_xref="UniProtKB/TrEMBL:Q2ST63" FT /protein_id="ABC01831.1" FT /translation="MVYKMIIGIYGKIGSGKTYISNKFINFHPEFKIINADDVSKKVLE FT NQEIKSKLFEIDNSIIKDNKVDKKYLRKKLFTNKKLKQKVDSLLWPLISREIQKEISNN FT PSSNYIIEAALLFELNLTNLDLTVKVKSSLLKSIFRVLKRDKTNIRDILRIRRSQNKSI FT KRKKPDLVISNFYQLEFYIQKNRLL" FT gene complement(68672..69481) FT /locus_tag="MCAP_0055" FT CDS complement(68672..69481) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0055" FT /product="hemolysin A" FT /note="identified by similarity to SP:Q06803; match to FT protein family HMM PF01479; match to protein family HMM FT PF01728" FT /db_xref="GOA:Q2ST62" FT /db_xref="InterPro:IPR002877" FT /db_xref="UniProtKB/TrEMBL:Q2ST62" FT /protein_id="ABC01094.1" FT /translation="MKLRLDEYIYKINLTQSRSKAKEHITNKKDVYVNNINIIKPSFLV FT DNNDVIEIRSTKLKYVSRAYEKLEKAINKWNIDLTNKVCLDIGASTGGFTQCCLDNNAK FT LVYAVDVGTDQLHSSLLNNLKVINMSQCNFRNAKKQDFLKNIDFVCCDVSFISLEKIFL FT PLKDIVEFNTSGVFLIKPQFELQPKNIKNGRINSKLDHKQAILKVINYANSNSFDVINL FT DYSPILGNKKQNIEYLAYIIKKENNYKIWKEEEIDQLVNIAWKELKK" FT gene complement(69481..69696) FT /locus_tag="MCAP_0056" FT CDS complement(69481..69696) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0056" FT /product="hypothetical protein" FT /note="identified by Glimmer2; putative" FT /db_xref="GOA:Q2ST61" FT /db_xref="InterPro:IPR003761" FT /db_xref="UniProtKB/TrEMBL:Q2ST61" FT /protein_id="ABC01095.1" FT /translation="MNNENKSYDELISEIKEDTKKLSSNEISVEQAMEIFEQNIKKIKL FT AKEKLTQYKGQINKVMQDDELEEFKD" FT gene complement(69689..71095) FT /gene="xseA" FT /locus_tag="MCAP_0057" FT CDS complement(69689..71095) FT /codon_start=1 FT /transl_table=4 FT /gene="xseA" FT /locus_tag="MCAP_0057" FT /product="exodeoxyribonuclease VII, large subunit" FT /EC_number="3.1.11.6" FT /note="identified by similarity to SP:P04994; match to FT protein family HMM PF01336; match to protein family HMM FT PF02601; match to protein family HMM TIGR00237" FT /db_xref="GOA:Q2ST60" FT /db_xref="InterPro:IPR004365" FT /db_xref="UniProtKB/TrEMBL:Q2ST60" FT /protein_id="ABC01348.1" FT /translation="MKTILSVQELNESLKTFIEEPDYFKNIYVKGELSNLTFNKSGHVY FT FSIKDQNAAINCMMWKSNTQKLASLNLEDGMQIICHGRLTYYIPTGRVSFEAKDIQIYG FT IGDLQKIYEQRYKDLKQAGWFDQNLKKPLPEFIKNVGIITASSGAAIHDLITTIHRRLP FT LINIYLFPAQVQGAQSEIDIANKIKQANDFKIKLDVLIVGRGGGSYEDLWAFNELVLLQ FT AIKDSKIPIISAVGHEPDVVLSDFVADIRAATPTAAGELVSKDINEIKNKLKHYYQTNK FT TLISNKLKLTNQELTNFKENQIKFINNYLSNQYLELKQLSAYNPNLVKNKINSLIDKLD FT DNKHFIFESIKKIIILQNKEINNHSNINKQKISDFLKKQITDFNFAISSFKGLISQKIK FT FEELSFASLEKQVGLLNPLKPLENGFSIITNLNNKKITSYKQVKINEDLKVFLSDSKLV FT VTIKEVKINE" FT gene complement(71097..71495) FT /locus_tag="MCAP_0058" FT CDS complement(71097..71495) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0058" FT /product="N utilization substance protein B (nusB), FT putative" FT /note="identified by match to protein family HMM PF01029; FT match to protein family HMM TIGR01951" FT /db_xref="GOA:Q2ST59" FT /db_xref="InterPro:IPR011605" FT /db_xref="UniProtKB/TrEMBL:Q2ST59" FT /protein_id="ABC01468.1" FT /translation="METKISFSKKRKLLIQAFYKYQLLNASIDYIYQDVLDDVQNFNNK FT QLLFEINLIAEKQVDLINHININISSNWKWDRIPAVIRAILIVGTYEILYTDTPKPVTI FT NEMVNYVKEIEPDFDYKFVNAVLDKIIK" FT gene complement(71507..72577) FT /locus_tag="MCAP_0059" FT CDS complement(71507..72577) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0059" FT /product="lipoprotein, putative" FT /note="MCAP_0059 is a continuous ORF with high DNA FT similarity to a region in M. mycoides SC annotated as: FT [MSC_104 - (intergenic region) - MSC_103]" FT /db_xref="UniProtKB/TrEMBL:Q2ST58" FT /protein_id="ABC01324.1" FT /translation="MKKLLSIITGFSLVISPSLFAISCSPKVQINNSFSDITSIKNVKA FT FKNNQAFISRDELKEILSGNQTTNRLNSNGTNTSENQTSNKNYATNRLRALAADSFTKN FT KQQAWESLKKATMTFYKKVKPTAVNVLGYEEIKKETVDKLENNLKTIFLVFKDNNKESE FT KLEVELLPEIKNNQVIKDNVLYLEHLEKPENLKLANQKSIVEILRKYFSLIPNLLSNSK FT ENKAQNSNNSLKETEFFNNLIKELSMYLANAVKYFNSESGVVSTNPSFSYKTRSKQIYE FT YITKNKKDDLYARLSKVFSSEFNKIDFIDIFKDFEFDKDEVKDNNNDKKVITKIIKSSA FT TDSSSSSATTTSTTNR" FT gene complement(72604..73473) FT /locus_tag="MCAP_0060" FT CDS complement(72604..73473) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0060" FT /product="endonuclease IV" FT /EC_number="3.1.21.2" FT /note="identified by similarity to SP:P54476; match to FT protein family HMM PF01261; match to protein family HMM FT TIGR00587" FT /db_xref="GOA:Q2ST57" FT /db_xref="InterPro:IPR012307" FT /db_xref="UniProtKB/Swiss-Prot:Q2ST57" FT /protein_id="ABC01147.1" FT /translation="MDKVLLGCHVSMNKQNNYLVGSVNEAISYKANTFMIFTGPPQSTL FT RTNTNHLYINQMHELMNSYKIDAKDLVVHAPYIINIANSVDQNKWEFAVNFLIQEIKRC FT EEIKIPTLVLHPGSYTTGNYKDSLNQIIKALDMVSNYQVNVKIALETMSGKGTEVCSKL FT EDFKYILDNVKNKDKVGVCLDTCHLHDAGYDLSKWTEFKEQIKQNFNLDKVLCIHLNDS FT KNMISSHKDRHANIGYGFVGFDTLVNVVFDKDFSNISKILETPYIDKKAPYKIEIEDLL FT NKTFTNRL" FT gene complement(73466..74218) FT /locus_tag="MCAP_0061" FT CDS complement(73466..74218) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0061" FT /product="riboflavin kinase / FAD synthetase family FT protein" FT /note="Similar non-mycoplasma proteins have 65 amino acids FT at the NH2 end not present in this protein; identified by FT similarity to SP:P54575; match to protein family HMM FT PF01687" FT /db_xref="GOA:Q2ST56" FT /db_xref="InterPro:IPR015865" FT /db_xref="UniProtKB/TrEMBL:Q2ST56" FT /protein_id="ABC01852.1" FT /translation="MNGQFIALFCDFKYLTTKLLNKFNKDQLIIFGYSLNKNDFDYICS FT DYQLKIFKNQKYHFIDLNKQDINQLINKYQFTKVYITKSFKKISNIQNIFPNTYIEDDL FT TDINNAKQSLVNADINSFYNIAGFNYTFSGIVTHCNHLGRTIGFPTANILTNDSLVIKN FT GVYLVKVIIGDKNIQFGMGDHWINRNNLKVFETYIFNFSNDIYNSKITFELLDYIRDNQ FT KINSLDQLKTLLNNDKKECLKRMEKYNG" FT gene complement(74293..74368) FT /locus_tag="MCAP_0062" FT tRNA complement(74293..74368) FT /locus_tag="MCAP_0062" FT /product="tRNA-Lys" FT gene 74775..76349 FT /locus_tag="MCAP_0063" FT CDS 74775..76349 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0063" FT /product="glycosyl transferase, group 2 family protein" FT /note="In the absence of evidence for cell wall or FT lipopolysccharide synthesis in mycoplasmas, or capsule FT synthesis in M. capricolum subsp capricolum Kid, the role FT category biosynthesis/degradation of surface FT polysaccharides and lipopolysaccharides is assigned to FT foster comparison with genes having possible FT capsule-associated functions in other organisms of the FT Mycoplasma mycoides phylogenetic cluster; identified by FT match to protein family HMM PF00535" FT /db_xref="GOA:Q2ST55" FT /db_xref="InterPro:IPR001173" FT /db_xref="UniProtKB/TrEMBL:Q2ST55" FT /protein_id="ABC01535.1" FT /translation="MKKKSNVYSLIIGFWTICNCLIIASVVTSSVMLFIRQSDLKLYNK FT ILIVIILWINSIILSYFWLNSIKDFIYSLIFIIRKKSILKKYDPIVKSVLTEEFKNKKV FT VFLYCTCNDFDPNALKKSMFQDYINYEIVILDDSTKLEYISKIDEFSKKHNIKVIRRKN FT REGFKAGNLNNYLKNNDYDYFVVLDSDEILPNNFISESLKYFQYDQNIGVVQAVHLAAK FT PNNFYQYLLGLSIDSNSLVTQVMKNFYGSNSLLGHGMMISKECYKKTNGFPHIVAEDIA FT FAIEVKDAGYKIAYAFNIFCKEEFPNDYISLKKRQCKWTQGNVEYMKKYSKDIKKSSYK FT WYEKLDIKLSHYSLPIIPVLSLILIINASLLGFLEYRIDPYRIALLSMSLLFLICPIIP FT NFFVYAKSKKIFFVIPFFIASIINYTSLTPMMIRTVILSLFNKKAVFLVTPKDKNKIPL FT RYVILHSIEPLIFSFCVSLLIYFSWGTVVPTLIITVPLALTPFIIVLANFKMNDKKEKL FT SKTKRSF" FT gene 76352..77230 FT /locus_tag="MCAP_0064" FT CDS 76352..77230 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0064" FT /product="UTP-glucose-1-phosphate uridylyltransferase" FT /EC_number="2.7.7.9" FT /note="identified by match to protein family HMM PF00483" FT /db_xref="GOA:Q2ST54" FT /db_xref="InterPro:IPR005835" FT /db_xref="UniProtKB/TrEMBL:Q2ST54" FT /protein_id="ABC01257.1" FT /translation="MKIRKAIIPCAGFGTRFLPFTKSQAKEMLPIIDKPAIEFIVKEAI FT NSGIEEILIIIRAGKNHIANHFNRNIELEYFLAEKNKISELQLISEKYNATIYYLIQEE FT QLGLGHAISLAKDFIKDEPFAVLLGDDLFKCKIPAIKQLIEIYDKYHQNVLGTIYIDKQ FT NSKKYGICQGNLVSKDVYKVDLVVEKPEPENSPSNIAIGGRYVLLPEVFKYLDMKIKGK FT SGEIELTDSILKTMDESECYAKIIDGSRYDIGNKLGYLDAILDFGLEREDLKEEFLDLI FT ETKVEKTSSNN" FT gene 77432..77860 FT /gene="rplK" FT /locus_tag="MCAP_0065" FT CDS 77432..77860 FT /codon_start=1 FT /transl_table=4 FT /gene="rplK" FT /locus_tag="MCAP_0065" FT /product="50S ribosomal protein L11" FT /note="identified by similarity to SP:P29395; match to FT protein family HMM PF00298; match to protein family HMM FT PF03946; match to protein family HMM TIGR01632" FT /db_xref="GOA:Q2ST53" FT /db_xref="InterPro:IPR006519" FT /db_xref="UniProtKB/Swiss-Prot:Q2ST53" FT /protein_id="ABC01745.1" FT /translation="MAKKITRIAKLEFMAMQAKPGAELASLGINMPAFTREFNDATKDR FT AGDVVPVVITAYDDKSFDFVLKTTPAAYMLKKVAKIEKGASNSKTQTVATVTLDDIRSI FT AEYKMPDLNANTIEAAMKQIIGTAKNMGIKVTGMEDFK" FT gene 77860..78540 FT /gene="rplA" FT /locus_tag="MCAP_0066" FT CDS 77860..78540 FT /codon_start=1 FT /transl_table=4 FT /gene="rplA" FT /locus_tag="MCAP_0066" FT /product="ribosomal protein L1" FT /note="identified by similarity to SP:P04447; match to FT protein family HMM PF00687; match to protein family HMM FT TIGR01169" FT /db_xref="GOA:Q2ST52" FT /db_xref="InterPro:IPR016094" FT /db_xref="UniProtKB/Swiss-Prot:Q2ST52" FT /protein_id="ABC01455.1" FT /translation="MAKISKRFKEALSKVEKNKVYPLNKALDLAKQTATTKFDSTVEVA FT FNLNIDPRKADQQIRGAVVLPAGTGKTQRVLVLTNTKTKEAEQAKADIVGGEELINRIK FT NENWFDFDIIVATPEMMAKLGAIGKILGPKGLMPNPKTGTVTMDVAKAVDDIKKGKVEY FT RADKEGNIHLIIGKVSFEAEKLEENFKAVIDEIRRVKPQTVKGDYIKNITLSTTMGPGI FT KVEF" FT gene 78769..79266 FT /gene="rplJ" FT /locus_tag="MCAP_0067" FT CDS 78769..79266 FT /codon_start=1 FT /transl_table=4 FT /gene="rplJ" FT /locus_tag="MCAP_0067" FT /product="50S ribosomal protein L10" FT /note="identified by similarity to GB:CAE77613.1; match to FT protein family HMM PF00466" FT /db_xref="GOA:Q2ST51" FT /db_xref="InterPro:IPR002363" FT /db_xref="UniProtKB/Swiss-Prot:Q2ST51" FT /protein_id="ABC01175.1" FT /translation="MSNSRPAHARKAEIVAEIVSKIKSAQGVAIAEYKHLTVAKMTELR FT VQALKQNIDIKVYKDSLVRRAVEELGLVDLIPFLTQQNVFIFSNEDSISAAKLVANFAK FT KNEALKLKAGIYEGKVVDTAGINEVASLPSKEELYSMFASSLLYPLRKVMAAINAVAET FT RN" FT gene 79342..79710 FT /gene="rplL" FT /locus_tag="MCAP_0068" FT CDS 79342..79710 FT /codon_start=1 FT /transl_table=4 FT /gene="rplL" FT /locus_tag="MCAP_0068" FT /product="50S ribosomal protein L7/L12" FT /note="identified by similarity to GB:CAE77614.1; match to FT protein family HMM PF00542; match to protein family HMM FT TIGR00855" FT /db_xref="GOA:Q2ST50" FT /db_xref="InterPro:IPR013823" FT /db_xref="UniProtKB/Swiss-Prot:Q2ST50" FT /protein_id="ABC01611.1" FT /translation="MPITKDEIIKALEEMKLNELNELVKAIEDHFGVVASVGVAAAAPA FT EATNAAPTEVSVVMTSVGQQKVAVIKVVKELTGVGLMDAKKMVDGAMPVTIKEHVKPEE FT AEEMKAKLVEAGASIDLK" FT gene 79881..81053 FT /locus_tag="MCAP_0069" FT CDS 79881..81053 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0069" FT /product="hypothetical protein" FT /note="identified by Glimmer2; putative" FT /db_xref="UniProtKB/TrEMBL:Q2ST49" FT /protein_id="ABC01349.1" FT /translation="MSFDYFLNTKLLNKINKKLENNIFKTPLFYSTKQKLTFNFVDKVS FT KDRFLSYYTKAFYDVFLESDVEKKLKIYELAFLVIIETKTNLDFLTILKIFKEIKKGKR FT PTNYLERLVFNIIYAYEYIKKPKVLVNEDNLEMLISILLVGLEFDLDLKINYYRTPKTK FT TITSNSLSSELISKELENLFNYLNFLQVNNLCTYSQTFLLFSTLIMISPFQKYNLIFIT FT LFSQWISFQHNSSNKLIIPISYFLKDLNNYLLEFNNLNNNFQADNLIDLLSNDYLKSIN FT MYNHASCVYKWIIKDKNRLWIFEDDASFIVLTLFLENSSNLSFNNIKSLLTINKIKLLN FT EEQIKNTLDKLVLNNVLKTTNDHVVKYVLVDKYLEKSKYLINMKGLYNGL" FT gene 81043..84906 FT /gene="rpoB" FT /locus_tag="MCAP_0070" FT CDS 81043..84906 FT /codon_start=1 FT /transl_table=4 FT /gene="rpoB" FT /locus_tag="MCAP_0070" FT /product="DNA-directed RNA polymerase, beta subunit" FT /EC_number="2.7.7.6" FT /note="identified by similarity to SP:P37870; match to FT protein family HMM PF00562; match to protein family HMM FT PF04560; match to protein family HMM PF04563; match to FT protein family HMM PF04565; match to protein family HMM FT TIGR02013" FT /db_xref="GOA:Q2ST48" FT /db_xref="InterPro:IPR007641" FT /db_xref="UniProtKB/Swiss-Prot:Q2ST48" FT /protein_id="ABC01305.1" FT /translation="MAYKIRKINRNVERRDYTKVSMNLSLPNLIGIQTETFEWFKTKGI FT QEVLDEFFPILSFDGSSVLTLENWGFKEPRLSVRQAREESKIYDAPIYANLKLSVNKTE FT EIQKEFDGVDQEDTLKVLTHWLEEKTGNGNITFKQQSQNSYFFEITIKKSEKPDLIQID FT IIEDKKTSLICNVSIYKSGEVFLGDFPLMTEAGTFIINGSQKVIVSQLVRSPGAYFNKE FT LNRKTGEMIYFADIIPSRGTWLEYETDSKKIGSDAINPLYVKIDKSRKTTATSLLLAFG FT ISKDDILNIFDNDEVLVETLQQDSIIGDFKIDWSNQVQEIYKKIRQGETATSEGASKFI FT NSILFDKRKYDLTKAGRFKLKQKLSIKNRILNKVIAEDILDANNNVLIAKDTEVTKNNI FT QEISKILDQDVMSIDLKYLSDIPGNRKVQKIRVYKDSELKTDTTCLIGLTNSSNEEFIT FT VADILSTVSYLLNLKYNIGEIDDIDNLGNRRVRTVGELLQNQFRMGLNRIDKNVKEKLA FT TSDLYKVKTSTIINAKPLTAIIGEFFNLSQLSQFMDQINPLSELTNKRRLTALGPGGLS FT RDRAGLEVRDVHPSHYGRICPIETPEGPNIGLINNLSTYARVNEYGFITTPYRKVINGI FT IQNDQVEYLTADQEKNFIIAQSNVNQDENGKILDEIIVSRFNGDDYMAKVEEIHYIDVS FT PKQIVSVATSGIPFLENDDANRALMGANMQRQAVPLIKPESPIVATGIEFEAARDSGEA FT IVAKEDAIVKYVDSKTIITDGESGIRTYILSDYERSNNGTSLTQSPIVKVGDVVKKGEI FT IADGPSMDQGELAIGQNVVVAFSTYNGYNFEDAIVMSERIVIDDRFTSIHIDEYTLEVR FT NTKQGQEEVTREIPNMSEQAKRHLDAEGIVAIGTEVKVGDVLVGKVTPKGQVQLSPEDK FT LLHAIFGEKSRNVKDNSLRVPNGGEGIVQSIKRFKAKSALNPDGIELPADIIEVIKVYV FT VQKRKIQEGDKMSGRHGNKGIISRILPIEDMPHLEDGTPVDIILNPQGVPSRMNIGQIL FT EIHLGMAAKKLNQKVITPVFEGLNEKELEEIMAEAGMTNYGKVTLIDGQTGEPFDKPIA FT VGVMYMLKLSHMVDDKIHARNVGPYSLITQQPLGGKAQNGGQRFGEMEVWALEAYGAAH FT TLREILTIKSDDIKGRSKTYEAIVRSKRIPEPGIPESFNVLSKEIMGLGFNMYMIDETG FT EKSAINAYDKKDFEIDNYDDEILIKTDNLYIDDQDVDAEFEDLTYVDENDILNSFELDN FT EEE" FT gene 84918..88685 FT /gene="rpoC" FT /locus_tag="MCAP_0071" FT CDS 84918..88685 FT /codon_start=1 FT /transl_table=4 FT /gene="rpoC" FT /locus_tag="MCAP_0071" FT /product="DNA-directed RNA polymerase beta' subunit" FT /EC_number="2.7.7.6" FT /note="identified by similarity to SP:P37871; match to FT protein family HMM PF00623; match to protein family HMM FT PF04983; match to protein family HMM PF04997; match to FT protein family HMM PF04998; match to protein family HMM FT PF05000; match to protein family HMM TIGR02386" FT /db_xref="GOA:Q2ST47" FT /db_xref="InterPro:IPR012754" FT /db_xref="UniProtKB/Swiss-Prot:Q2ST47" FT /protein_id="ABC01241.1" FT /translation="MENLNRKKAIKIELANPDTIRSWSHGEVLKPETINYKTLKAEKDG FT LFDERIFGPTKNYECVCGRYKKANPMNKGKKCEKCGVELTESIVRRERMGHIELEEPVT FT HIWMLKVAPYRIAAILDLKAKELEEVVYFVSHIVLEQGNQSHFLEKEVLDLGSSRITKT FT REKLQLSILDVIDQINDPEHRDTKKANRLLEELKNTSIPFSIDEATSLISKYTNAKFGI FT GARAVEYLLEKVDLTKEIEAIKIQLENSKKTPNERTKLLKRLETFDSLKRSKQRPEWMV FT MRVIPVIPPDIRPIIQLDGGRFTTSEINDLYRRIIIRNERLKKVKEMGAPSIIVNNEKR FT MLQEAVDALFDNERKPKPVQGKNKRPLKSLTSVLKGKQGRFRQNLLGKRVDYSARSVIA FT IGPDLKMYQAGLPREMAITLFKPFVIQWLQDHEYAENVKIAEKMLLQNDPKVWEALEQV FT IKDRPVLLNRAPTLHRLGIQAFEPKLVKGKAIRLHPLVTTAFNADFDGDQMAVHVPITK FT EAVAESRALMLGSSAILGPKDGKAIVTPGQDIILGNYYLTTEEKNAKGQGMIFSSLDEA FT FMAYNSGQIHLNSLIGIALSALPEEKFSDKNQRLNSYLLTTVGKLYFNQIFDDNFPWIN FT SNNIWNAKEAVKEFIYDFSQDIDKVIENVQVQQPIKKKELSLIIERYFETHGARKTAEM FT LDKMKDLGFSFSTKSGTTISAGDVVAFTHKYDEFKEADQKVEQITDFYNMGMLTNSEKK FT RRIIDVWSEVKDKIQNELATVLRKDVKNPIFVMVDSGARGNVSNFTQLVGMRGLMNDTK FT GDIKEIPIKSSFREGLTVSEYFVSTHGARKGMADIALKTADSGYLTRRLVDVSQEIVVV FT NEDCEPTKGFEVSAIIDTKHDNVIVPLKDRLVGRFTFEDIYDDDKNLVASANTLIDKNI FT AEKIIMSGISSVIIRSVLTCDNKRGVCQKCYGLNLATASVVNIGEPVGVIAAQSIGEPG FT TQLTMRNFHTGGVAGNVDITQGLPRIKELLDVTTPKGAVAIISEVDGVVSEIEDYNGVF FT VINIVTENEEVKKYKTEFNSVLRVEQGSSVMAGQKLTEGAIDLHQLLEFGGIQDVQNYI FT LKEVQKVYRLQGIEISDKYIEIIIKQMLNKVKITDSGDSDLLPGEIITIQNYKEVVQDC FT IVKSIRPPLSKAQIFGIKKAPLESSSWLSSASFQDTARVLTRAIIKGKEDKLEGLKENI FT MLGNLIPAGTGLTGTQEVEQLAEQYHNNEY" FT gene 88775..90964 FT /locus_tag="MCAP_0072" FT CDS 88775..90964 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0072" FT /product="lipoprotein, putative" FT /db_xref="UniProtKB/TrEMBL:Q2ST46" FT /protein_id="ABC01450.1" FT /translation="MKKILSLISLFSLITSSSLLVISCTNNYSNINKIPTIPNANKKPE FT TKPEIPNQRTPENVPNSSDIKPKDPKIPNNNTIRDDDQNNHSNNQLNPNYVPSNIAKLV FT YESNKIYESEKNPEYFKDSHLFSSDFLLNNSAYTISRSTNKFHTGTHNMNVFLKTGNYS FT NAVDFRSVYDSNTDNEFWKHTKNIGWYGDLGKTDDEKVSFYNDHLSVDGMVKQSFLEKF FT EAKNISFVKELNFDFNNLITKNPFGFLPSNLSQLFYYMNFESISKLFKINNIVKIRANF FT DDEKGEFEILISDKNNQNYYQKINQTNTKSLKKNLDFYQYIYDRSFSLLIGVKRWWQDQ FT YRLQQDKIINDYKGGTVWVLDRVVNKELEEKGYWELLLATNIHVFSLAEAFDKSLYFQK FT DSTRPYANSWTGSFFDYKNWSNSKQAEFMATKANKTLLDSNVISNVSNFEPTFKAEEQY FT LEAAYYTPRYSVSGFKTDTPYTGQVYIEKFDESTRFGSTRNGGADFVILKLKIQKEKLK FT SILPKLDEIINTDKEKDWHIGLGKNELFTPLKTQFYAGYPVVSWNHGTKPLYEFKGNKS FT VGGIISTQNRYVKEGNFQSLWTKYNEVENKDWNSHHENWKKYTEPFKKDQHGMVKTVLT FT QHSSLFTRIEKNEDHKALDGGSSGSMAIDSSFNLIGINYLLTKDELHNTTTNAISLMQG FT QSTYENGFDGNIRIDFINKLKKDNLITVKLNPNKK" FT gene complement(90971..91276) FT /locus_tag="MCAP_0073" FT CDS complement(90971..91276) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0073" FT /product="Conserved hypothetical protein" FT /note="identified by match to protein family HMM PF00581" FT /db_xref="InterPro:IPR001763" FT /db_xref="UniProtKB/TrEMBL:Q2ST45" FT /protein_id="ABC01560.1" FT /translation="MKKSIEISNDKFLELLDKGWQVIDVRDKYEYENFEKFLPSVNISY FT PEVLNNVNKRWPNLDTKLIFICNHGNRSGLTARHLHKLGYVNVYVLDTGIAGLFSS" FT gene 91301..91798 FT /locus_tag="MCAP_0074" FT CDS 91301..91798 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0074" FT /product="ribose 5-phosphate isomerase B, putative" FT /note="identified by similarity to OMNI:NTL02MM0853; match FT to protein family HMM PF02502; match to protein family HMM FT TIGR00689" FT /db_xref="GOA:Q2ST44" FT /db_xref="InterPro:IPR003500" FT /db_xref="UniProtKB/TrEMBL:Q2ST44" FT /protein_id="ABC01652.1" FT /translation="MLKILKNIIVKYFKREVSMSNRIYIGNDHSAVEMKQAIVNHLKSK FT NYEVIDLGNNDGKSCNYAKIGQTVAEYVVKDTNSRGIVICGTGIGISIAANKVKNARAA FT LVYEKETTELARIHNDANIIALGARMIAIPKAINLVDIFLNTPFEGGRHIERVDTLNEY FT KN" FT gene 91782..93023 FT /gene="glyA" FT /locus_tag="MCAP_0075" FT CDS 91782..93023 FT /codon_start=1 FT /transl_table=4 FT /gene="glyA" FT /locus_tag="MCAP_0075" FT /product="serine hydroxymethyltransferase" FT /EC_number="2.1.2.1" FT /note="identified by similarity to GP:22219039; match to FT protein family HMM PF00464" FT /db_xref="GOA:Q2ST43" FT /db_xref="InterPro:IPR019798" FT /db_xref="UniProtKB/Swiss-Prot:Q2ST43" FT /protein_id="ABC01749.1" FT /translation="MNTKINSKIRESLNKELKRQQSHIELIASENYVSQAVLELNGSVL FT TNKYAEGYPGKRYYGGCEFIDEIESLGIQTAKELFHAEHANIQPHSGSQANDAAYKALL FT EPKDRVVAMGLDAGGHLTHGYPINFSGYTYDFRFYGVNKDTEQLDYQEIEQIVLEHKPK FT LIVAGASAYSRIIDFKKFKEIADKVGAYLMVDMAHIAGLVAAGVHPNPMEYADIVTTTT FT HKTLRGARGGLILCKQEFAKKVDSAVFPGSQGGPLENLIAGKTQALLEASTDEFKEYGK FT QIVKNTKALANVLQENGLRLVAGGSDNHLINVDIKSTLQITGKKAEKILESIGIICNKN FT MIPFDTEKPFYTSGIRLGTPAMTTRGFKEEEFKQVGLIIVSALKDQSEENLEKLAKQVV FT SLCEKFPIYQSIKY" FT gene 93125..93748 FT /gene="upp" FT /locus_tag="MCAP_0076" FT CDS 93125..93748 FT /codon_start=1 FT /transl_table=4 FT /gene="upp" FT /locus_tag="MCAP_0076" FT /product="uracil phosphoribosyltransferase" FT /EC_number="2.4.2.9" FT /note="identified by similarity to SP:P50926; match to FT protein family HMM PF00156; match to protein family HMM FT TIGR01091" FT /db_xref="GOA:Q2ST42" FT /db_xref="InterPro:IPR005765" FT /db_xref="UniProtKB/Swiss-Prot:Q2ST42" FT /protein_id="ABC01714.1" FT /translation="MAFTEIKHPLIIDKLTRMRKTETSSKDFRENLSEIAQLMVYEIFR FT DLKLESVDIETPVSKTTGYTINQPVVLVPILRAGIGMLDGIQKLIPTARIAHIGLYRDE FT ETLETHQYFAKTTKDIDKSYVIVVDPMLATGGSACKAIDIVKQWGAKEIKFVCLVAVEP FT GIKRLQEQHPDVEIYAASKDEKLNEKGYIVPGLGDAGDRIFGTK" FT gene 93889..94287 FT /locus_tag="MCAP_0077" FT CDS 93889..94287 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0077" FT /product="membrane protein, putative" FT /note="MCAP_0464 has 4 membrane spanning regions" FT /db_xref="UniProtKB/TrEMBL:Q2ST41" FT /protein_id="ABC01817.1" FT /translation="MLKQTFLDKQLRKALIFNTVWWFILIIVFIVLSIIKTLNWINLIS FT LVIAYFCSYIAIFLLFLTKLLIIKYQNPYLIYLMFLLRIGIYVIPLFIALLLSDENIFS FT YLGILIGYSSNLAIPFFIHKRLEKKGGA" FT gene 94287..95147 FT /gene="atpB" FT /locus_tag="MCAP_0078" FT CDS 94287..95147 FT /codon_start=1 FT /transl_table=4 FT /gene="atpB" FT /locus_tag="MCAP_0078" FT /product="ATP synthase F0, subunit A" FT /EC_number="3.6.3.14" FT /note="identified by similarity to SP:P47645; match to FT protein family HMM PF00119" FT /db_xref="GOA:Q2ST40" FT /db_xref="InterPro:IPR000568" FT /db_xref="UniProtKB/TrEMBL:Q2ST40" FT /protein_id="ABC01220.1" FT /translation="MKLVTFASIKDNLTTWNKFNGILISILLVVIIVCTISIIYNKKVR FT NYNIDDKMPGFLVLVNVFVASVENIVVSILGKKYQKLTPYIMYLFAYIFIGCLLSILGL FT EAQGTSFTVTLSMGMVTFIMIYYFGIKYQKLAFFKRFRNPVELFTQFTPLISISFRLFG FT NLIGGSIILGLLYGLLIGFQLSWGVNNIQVDGMTRWASYAIWNPELVENGYLKQYEFWW FT AGLNLFTTPIMPFLHMYFDLFSGVIQSTVFAMLTLSYWSAQIDDNAKKTDLIEQVKEEI FT TNKYQ" FT gene 95186..95491 FT /gene="atpE" FT /locus_tag="MCAP_0079" FT CDS 95186..95491 FT /codon_start=1 FT /transl_table=4 FT /gene="atpE" FT /locus_tag="MCAP_0079" FT /product="ATP synthase F0, subunit c" FT /EC_number="3.6.3.14" FT /note="identified by similarity to SP:O08310; match to FT protein family HMM PF00137; match to protein family HMM FT TIGR01260" FT /db_xref="GOA:Q2ST39" FT /db_xref="InterPro:IPR002379" FT /db_xref="UniProtKB/Swiss-Prot:Q2ST39" FT /protein_id="ABC01331.1" FT /translation="MLHTAFISNILANYLGAMSVILPNILTVTGDIKYIGAGLASVGIL FT GTGVGQGLIGQGACLAIGRNPEMASKVTSTMIVSAGISESGAIYSLVIAILLIFVV" FT gene 95519..96064 FT /gene="atpF" FT /locus_tag="MCAP_0080" FT CDS 95519..96064 FT /codon_start=1 FT /transl_table=4 FT /gene="atpF" FT /locus_tag="MCAP_0080" FT /product="ATP synthase F0, B subunit" FT /EC_number="3.6.3.14" FT /note="identified by similarity to SP:P37814; match to FT protein family HMM PF00430; match to protein family HMM FT TIGR01144" FT /db_xref="GOA:Q2ST38" FT /db_xref="InterPro:IPR005864" FT /db_xref="UniProtKB/Swiss-Prot:Q2ST38" FT /protein_id="ABC01622.1" FT /translation="MLSVGFNIAINATTQGVPKIIESLFPNLPNFIAHLLATIVLVIVL FT AKLVYKPYKQMIEKQRQKITEVLSDAIEKQTQANIKIKQANSLLEEAKTESVSIINTAR FT VDAEIQKNKIIDNANLQAKNIQSYAQNSIKQEKIKAQLEIKNTIVNLAINSAEKILSKE FT IDKNTNKKLIEEFIKDLD" FT gene 96066..96611 FT /gene="atpH" FT /locus_tag="MCAP_0081" FT CDS 96066..96611 FT /codon_start=1 FT /transl_table=4 FT /gene="atpH" FT /locus_tag="MCAP_0081" FT /product="ATP synthase F1, delta subunit" FT /EC_number="3.6.3.14" FT /note="identified by similarity to SP:P09220; match to FT protein family HMM PF00213; match to protein family HMM FT TIGR01145" FT /db_xref="GOA:Q2ST37" FT /db_xref="InterPro:IPR000711" FT /db_xref="UniProtKB/Swiss-Prot:Q2ST37" FT /protein_id="ABC01307.1" FT /translation="MILKDSTINNYATALFNIAVKEKLVDDYIIQVDALIQSLSDKDDF FT NKLVSFSNKQEKQDAILIIEKTFAPFEFDIYLINALKILVENQLFINTRMILKALYKKL FT LDYKNIVLGVVYSTEKLTKTQLSAIKKKISNKVNKKVELVNKIDPTLIGGIKVNVQGKV FT FDGSIKAKLEALKKQMNT" FT gene 96623..98200 FT /gene="atpA1" FT /locus_tag="MCAP_0082" FT CDS 96623..98200 FT /codon_start=1 FT /transl_table=4 FT /gene="atpA1" FT /locus_tag="MCAP_0082" FT /product="ATP synthase F1, alpha subunit" FT /EC_number="3.6.3.14" FT /note="There is paralogous atpA gene, MCAP_0358 that is FT near another atpD but not part of the M. capricolum FOF1 FT ATPase operon; identified by similarity to SP:P37808; match FT to protein family HMM PF00006; match to protein family HMM FT PF00306; match to protein family HMM PF02874; match to FT protein family HMM TIGR00962" FT /db_xref="GOA:Q2ST36" FT /db_xref="InterPro:IPR000194" FT /db_xref="UniProtKB/Swiss-Prot:Q2ST36" FT /protein_id="ABC01292.1" FT /translation="MSFNIKEISEMIEKQIRNYNKEVVQTEQGTVVSVGDGIALIYGLD FT NAIMGELLLFSNNVYGMVLNLEEGAVGSVILGDETLIREGDIVKRTNKVVETPVGDALL FT GRVIDALGQPIDNLGPIDFTKTRPVERVATSVMARKSVSQPLETGILAIDSAIPIGKGQ FT RELIIGDRQTGKTAIAIDAIINQKNRNVKCIYVAIGQKDSTIVQVVEKFKKYGAMDYTV FT VVNAGASQPASLQYLSPYTGITIAEEWMESGNDVLIVYDDLTKHAVSYREMSLLLRRPP FT GREAYPGDVFYLHSRLLERAARVNENYGGGSITALPIIETQAGDISAYIPTNVISITDG FT QIFLSSELFNQGVRPAVDIGPSVSRVGSAAQIKSIKQVSGTLKLELAQYYELESFAKFG FT SDLDETTKATLDQGAKIIQMLIQKQFNPLEQVDQAILLLTIKSHLLKWLPLDSIYNFKH FT EILSHFKNDQQAAKLRKKLDEQKTFDDQLQKEILKQAQKVVLKITKNIKEYKPEAFGNI FT TEYQNLGK" FT gene 98202..99044 FT /gene="atpG" FT /locus_tag="MCAP_0083" FT CDS 98202..99044 FT /codon_start=1 FT /transl_table=4 FT /gene="atpG" FT /locus_tag="MCAP_0083" FT /product="ATP synthase F1, gamma subunit" FT /EC_number="3.6.3.14" FT /note="identified by similarity to SP:P37810; match to FT protein family HMM PF00231; match to protein family HMM FT TIGR01146" FT /db_xref="GOA:Q2ST35" FT /db_xref="InterPro:IPR000131" FT /db_xref="UniProtKB/Swiss-Prot:Q2ST35" FT /protein_id="ABC01392.1" FT /translation="MPNLSGLKTEISSVRNISKITNAMQLVASAKLRKISKKVIDTHNY FT VSEVYSLFNDIIRQTDKSVFLKESNFKANKTLWVVINSNLGLCGGYNSNVNKLVLQNLK FT LEDEIFAIGSKAVSFFRSKKIKIKNQITDIDINFTNKKARSISNDLLDMYINHEFDEIK FT IVYTKFINNVTFEPAIIRIFPIIKLENNFKHSQSLVFEPDAEQILSSTILIYINAIIYG FT TIIESQVSEQASRRTAMENATNNGKNLEQTLSLKYNRQRQGAITQEISEIVSGANNKS" FT gene 99053..100483 FT /gene="atpD1" FT /locus_tag="MCAP_0084" FT CDS 99053..100483 FT /codon_start=1 FT /transl_table=4 FT /gene="atpD1" FT /locus_tag="MCAP_0084" FT /product="ATP synthase F1, beta subunit" FT /EC_number="3.6.3.14" FT /note="There is another atpD gene, MCAP_0359 that is near FT another atpA but not part of the M. capricolum FOF1 ATPase FT operon; identified by similarity to SP:P33253; match to FT protein family HMM PF00006; match to protein family HMM FT PF00306; match to protein family HMM PF02874; match to FT protein family HMM TIGR01039" FT /db_xref="GOA:Q2ST34" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/Swiss-Prot:Q2ST34" FT /protein_id="ABC01548.1" FT /translation="MVSSKKTIDKNKTQVIGKIIQVLGPVVDVKFSENNIPKIYDALVV FT DNNGKKLVLEVEQNIGDEIVRTIAMGPTEGLRRGLDVINTNSPITAPVGNEVLGRMFNV FT LGDPIDEKPDLDVKRLPIHRDAPIYEELVTTTEILETGIKVIDLMIPFTKGGKVGLFGG FT AGVGKTILIQELINNIAKAHNGVSVFAGVGERTREGNDLYHEFIEAGVLNKTCLVFGQM FT NEPPGARMRVALTGLTIAEYFRDKKNMDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGY FT QPTLSTEMGSLQERITSTKNGSITSVQAVYVPADDLTDPAPATTFTHLDARIVLDRSIA FT SLGIYPAVDPLASSSRVLDPEIVGQEHYDIALKVQITLQKYQELQSIIAILGMDELSEE FT DKLIVQRARKIRNFLSQSFFVGEKFTGRPGVFVKVSDTVRSFKSILNGEVDHVPETYFL FT YSSTIDNVIEKYNKDKDK" FT gene 100483..100782 FT /gene="atpC" FT /locus_tag="MCAP_0085" FT CDS 100483..100782 FT /codon_start=1 FT /transl_table=4 FT /gene="atpC" FT /locus_tag="MCAP_0085" FT /product="ATP synthase F1, epsilon subunit" FT /EC_number="3.6.1.14" FT /note="identified by similarity to PIR:S29042; match to FT protein family HMM PF02823" FT /db_xref="GOA:Q2ST33" FT /db_xref="InterPro:IPR001469" FT /db_xref="UniProtKB/TrEMBL:Q2ST33" FT /protein_id="ABC01844.1" FT /translation="MGIKLKILTPNGAFVEDKEVDIINLKTIDGDIGVLENMAPFVTAL FT RNDTLSFKEKNKYTYIHLDQGLVFINSKECKIITEKLYLVDKQDKELATPLKLI" FT gene complement(100840..102051) FT /locus_tag="MCAP_0086" FT CDS complement(100840..102051) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0086" FT /product="membrane protein, putative" FT /note="MCAP_0086 has 5 membrane spanning regions" FT /db_xref="UniProtKB/TrEMBL:Q2ST32" FT /protein_id="ABC01722.1" FT /translation="MRDHNSSNNSKDHQNFHPNNQHHNYLDDKYYDQNQSSISSYHNHY FT QDNRYYYQDFRYNPNYQNQYKDDKYYYNQDFRYDQNYQQEYEQQKYYEEQSEQDSQSNN FT EEVKFKPDIKIKNIVKLSYLKFWILLFVFTSLIGYFAIFLISKYNNFLYDPNNIQKYSK FT SLHNWLYTMNKFKIWHLITIIIVLSLIWFIYVVLISTLFSNYKKYLKDMQQRTEEYQTQ FT KLPMLYLNKPEEGMAPLLIKKMYERQIKKPYYANWFCLAVYIYTGVGAIIYSMFVMFKW FT GSGKLQDNEAVHRLTLKQYFTQPGQLTPYYILLGIFLGVILIHIITLLSVKYVRNALEE FT YWQTPILSDEKIKELEKKANRRSLIVFIILIIIAFFVLAFFFIFFKIERRKGSIFSVLK FT RSGK" FT gene 102390..105218 FT /gene="mgtA" FT /locus_tag="MCAP_0087" FT CDS 102390..105218 FT /codon_start=1 FT /transl_table=4 FT /gene="mgtA" FT /locus_tag="MCAP_0087" FT /product="magnesium-translocating P-type ATPase" FT /EC_number="3.6.3.2" FT /note="identified by similarity to SP:P39168; match to FT protein family HMM PF00122; match to protein family HMM FT PF00690; match to protein family HMM PF00702; match to FT protein family HMM TIGR01494; match to protein family HMM FT TIGR01524" FT /db_xref="GOA:Q2ST31" FT /db_xref="InterPro:IPR008250" FT /db_xref="UniProtKB/TrEMBL:Q2ST31" FT /protein_id="ABC01176.1" FT /translation="MFLFKERKFSPKKITRHKKKTHFANERFIKQVSNLEQNEVLEILQ FT LKHFGLTNEQFELRLKKYGTNELKKKKFNLLTEFLHAFFGPFNIILLLISLYNFISYAT FT NGFYQETNSSDSKFELVGALIVLVMVLGSGLASFIQSLRSHLVTKKISSIVKSTTNIIR FT HKNDEDVEDYIKITKRNQLDLIRLGEEIDVKQLVPGDLIYLSSGDMLPADVRIIQSTDL FT FINQSSLTGESIPVEKHANNKKNTNNILDLENICYTGTSVVSGSALAVVLATANDTYFS FT TISKAILEKRPDSSFTKGIKQVTRMLLIFMLVMVPTVYLAKSIIGTISSGGSFDNIKDN FT PWFQAIFFAVAVAVGLTPEMLPMIVTTNLANGASRMSKQKVVVKQLEAIQSLGAIDVLC FT TDKTGTLTNDKIELVDYLRVDKKADPTLLKYLYINSYYQTGLKNPMDKAIVDYVNKHNH FT NFSIQDITKIDEIPFDFNRRKLTIIFDDENEKRFMVTKGSVEEILNSCTRVIQDDKVVN FT LTDTFKRQIIAYYEKINQQGKRLLGIAYKKIRDNQAKFSPKDEESLIFMGFASFLDTPK FT PSTKQTIKLLKKYGVDLKILTGDSEPITRAICKMVNLDIKGLVTGEEIDAASDYELKKI FT VEDNNIFVKLNPLQKVKIIQVLKQNNHVVGYMGDGINDAPVLRQSDVAISVNNATEIAK FT DASDIILLEKSLLVLEKGIIQGRTIFGNILKYIKITTASNFGNSLSVLIGTVWLPFSPM FT APAQILLQNLIYDFSQFGVALDKVDATFLTSPQRWQSKDLLPFTTINGTISTFFDLITF FT AIAGYYFGYITSYNNAIASSDTSLANISLAKFHACWFIIGLLSQTFVFQVLRTERLPII FT QSRSTWPVYVIGAMATIIAFMIVYVSQIGNLVQLTSPGLIYIPISITIIFSYCVVAQLT FT KMVYKKIFKKWL" FT gene complement(105679..105813) FT /locus_tag="MCAP_0088" FT CDS complement(105679..105813) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0088" FT /product="membrane protein, putative" FT /note="MCAP_0088 has 1 membrane spanning region, FT N-terminal." FT /db_xref="UniProtKB/TrEMBL:Q2ST30" FT /protein_id="ABC01146.1" FT /translation="MYFVLTPNFLASSTAIFVIVSLMFYYDQIFKNKFLDLILRFINF" FT gene 105998..107209 FT /gene="arcA" FT /locus_tag="MCAP_0089" FT CDS 105998..107209 FT /codon_start=1 FT /transl_table=4 FT /gene="arcA" FT /locus_tag="MCAP_0089" FT /product="arginine deiminase" FT /EC_number="3.5.3.6" FT /note="identified by similarity to SP:P16962; match to FT protein family HMM PF02274" FT /db_xref="GOA:Q2ST29" FT /db_xref="InterPro:IPR003876" FT /db_xref="UniProtKB/Swiss-Prot:Q2ST29" FT /protein_id="ABC01474.1" FT /translation="MEKKINVFSEIGTLKTVLVHRPGDEIENLTPELLERLLFDDVPFK FT DVAVKEHDAFTKIMRDNGVEVLYIEKLAAETLDQHPDLREKFIDQFISEANIEDKYKEK FT YRDFISSLDNYRMIKKMIAGTKKLELGIDEGYKAYPFIADPLPNVLFQRDPFSSVGFGI FT TMNRMWSVTRNRETIFPDLVFKHHNRFANQVPYYYERDWKEETIEGGDILVLNKETLII FT GVTQRTTLKAIEKFSERLFNDPESSYSKVIALDLPKSRAFMHLDTVFTNIDYDKFIAHP FT LIFDCIDEFKIYEVSKQGTKEVKKTLIELLSDAAGREVQIIRCGGNDVVGASREQWNDG FT TNVVALRPGKVIAYERNWITIDLLRKAGVEVLTIASSELSRGRGGPRCMTMPLWREDLQ FT EIKR" FT gene 107227..108222 FT /gene="arcB" FT /locus_tag="MCAP_0090" FT CDS 107227..108222 FT /codon_start=1 FT /transl_table=4 FT /gene="arcB" FT /locus_tag="MCAP_0090" FT /product="ornithine carbamoyltransferase, catabolic" FT /EC_number="2.1.3.3" FT /note="identified by match to protein family HMM PF00185; FT match to protein family HMM PF02729; match to protein FT family HMM TIGR00658" FT /db_xref="GOA:Q2ST28" FT /db_xref="InterPro:IPR006132" FT /db_xref="UniProtKB/TrEMBL:Q2ST28" FT /protein_id="ABC01516.1" FT /translation="MALNLKGKSFLKLLDFSPREIRYLLDLSRDLKRAKYAGNEVQTMQ FT GKNVVLLFQKDSTRTRCAFEVAALDQGAHVTYLGPSGSQFGKKESVADTAKVLGRMYDA FT IEFRGYEQSVVEDLAKYSGVPVYNGLTNEFHPTQILADFLTVEEYKGNLKGLKFVFAGD FT TRNNVATSLMVGCAKMGMHFVGAAPKELWPSEDLVNQSKEIAKETNATISFVEDMKQAC FT SDADVIYTDVWVSMGEPAEVWESRINLLKPFQVNMDAIKVAKPDVIFMHCLPSFHDLNT FT EVGRQIYEKFGIPEMEVTNEVFESKHSVVFEEAENRLHTIKAVMVATIGK" FT gene 108285..109754 FT /locus_tag="MCAP_0091" FT CDS 108285..109754 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0091" FT /product="transporter, putative" FT /note="Part of a likely operon including arginine FT deaminiase, and ornithine carbamoyltransferase. The match FT to the PFAM for C4-dicarboxylate anaerobic carrier and the FT presence of 13 membrane spanning regions support the FT annotation; identified by match to protein family HMM FT PF03606" FT /db_xref="GOA:Q2ST27" FT /db_xref="InterPro:IPR018387" FT /db_xref="UniProtKB/TrEMBL:Q2ST27" FT /protein_id="ABC01411.1" FT /translation="MLSAFSILFITIAILVLISWIFKWAGVTVQISTDKGVETKTILAV FT GIFDLFKAPMQGFIDRAEIIVFILSLGAFINVVVASQALEGFSQLIVSKMKGKEIWAIV FT SLMIFFGICGTAEGMAEESLGFYMICIPLMIAAGFDKFTGLLIVLVGAGTGVLASTVNP FT FLISIAVDSLNKAGKITNTGDGLVWRLVSFIVLMSISITMVVLYAKKVKNNPAKSIVFK FT TLEEDKEFFLSNSTEKIEMNWRRKLTISIFGVAFLIMIFYLVGWDAILGNKNSEILANF FT VKEHIPYLTGTDDGFGHGGLESVAAIFLISSILLAIVNSLGEEKFIKEFMAGACDLLGV FT CLVLAVAAGITWILKVTRMQELFVAGLQSSIGAIKSPILILLVMFLLFILLSFLIPSTS FT GFAGAVFPLLIGVVLKQQDVLASGSITAFSFASGLVNLITPTSGVVMGAIAITRIDYGK FT FVKGISPFVAVLSVSSLTLLLIGGAIGGTIA" FT gene complement(110217..111184) FT /pseudo FT /locus_tag="MCAP_0092" FT /note="glucokinase, authentic frameshift; this gene FT contains a frame shift which is not the result of FT sequencing error" FT gene complement(111276..112403) FT /locus_tag="MCAP_0093" FT CDS complement(111276..112403) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0093" FT /product="beta-lactamase, putative" FT /note="identified by match to protein family HMM PF00144" FT /db_xref="InterPro:IPR001466" FT /db_xref="UniProtKB/TrEMBL:Q2ST26" FT /protein_id="ABC01080.1" FT /translation="MEFVNIEKTINSFIKNKYFKGATIRIAKDKKIIYAKQFGYNDQNN FT TILLKGDEIYQAYSMTKPITTLAFLLLVDKKLVSLDDDLSKYIPSFKDKNIKIWNLLTM FT TSGLTYSGNKSNTQLQIKKILENWKLNNLTLEQLCDELSKVDLLFIPSTNWYYGLSLDV FT LSRVIEIVSNKTYRDFVKEEVFNKLNMNDSDYYLFDNKRKANVFKWSYKEDQNHLDQVE FT NFDFLFQSIDKLSVCNLGGSGLFTTADDYLKFLNVLIDGKLEDNTQFISLDLLNEMKSD FT QLTKHNLKQFFNWNLNEDYSYGFGGRVRIKNQLYPLTEVGEYGWDGLLGSSGLIDTKNK FT ITMTIMLSSHPGHNKLVETEFFDALYQDLRLNNLA" FT gene complement(112508..114721) FT /gene="ptsG" FT /locus_tag="MCAP_0094" FT CDS complement(112508..114721) FT /codon_start=1 FT /transl_table=4 FT /gene="ptsG" FT /locus_tag="MCAP_0094" FT /product="PTS system, glucose-specific IIABC component" FT /EC_number="2.7.1.69" FT /note="identified by similarity to SP:P20166; match to FT protein family HMM PF00367; match to protein family HMM FT PF02378; match to protein family HMM TIGR00826" FT /db_xref="GOA:Q2ST25" FT /db_xref="InterPro:IPR018113" FT /db_xref="UniProtKB/TrEMBL:Q2ST25" FT /protein_id="ABC01785.1" FT /translation="MLTQTNKSNFKDKLKAFGANIMPTLSKLSKAFLLPIALLPIAGVF FT LGVGAAIAANTAEKSTLWFIGAVMKTMGEVCFGNLPVLFCISLALAYTKDSGVAAITAV FT VGFLVFNGIQAPLFVQGVIKSEKVSEYSLLWYKHVSNSLTGSNMGILSLNTGVLGGIFV FT GAIAAKCYNKFHQTQLPTAISFFSGTKLVPIITFVAVIPLSFIFMAVWPVIGLGLNKFG FT QVSGTLPYGTDSLIFEIVERSLVPFGLHHVFYAPLWWTSAGGSIAEGFENLQKQSDTVK FT TAFVNAYNALHSTNHENLEKIISVIKGNDKLWGAVGDQLISQAVIANLKILNFTDVEKL FT GINLGRFQSGKFGFMLLGLPAAALAMWLAAPKENRQQVFGIYFSAAFTCFLTGITEPIE FT YTFLFVAPWLFYGVHMPLASIAFWITGALQTHITQTVSGGIIDYIVFGVIPFIGGAMKP FT LSAFGVLIVAVGLAPIYFFAFYFLIKLFNVKTPGRDGNAEAKLYTKADYKASKGLNVDG FT SKMSSSTTDEKEQARLAKAAAIIEYLGGEENIVDVDSCASRLRLTVVDSKKANIDGIKS FT LGGTTGALVKGNNIQIVYGGEQEAIKPRMQKLLEQQRNEKMMTHSEEMKSDEMSMSCDA FT QEACEKKDCKLKEESCGCEENCMCEENKMQEQDQPVSEMKVEEKVVDEMMIEKPKSTRA FT KSTKAKSTTTKSTSKSTKSTKSTASKPKTTKTKSTNSKAKSTK" FT gene complement(115141..115629) FT /locus_tag="MCAP_0095" FT CDS complement(115141..115629) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0095" FT /product="membrane protein, putative" FT /note="MCAP_0095 has 1 membrane spanning region, FT N-terminal." FT /db_xref="UniProtKB/TrEMBL:Q2ST24" FT /protein_id="ABC01330.1" FT /translation="MIIFSQQTTSHIPTWAVYLILVLGLIGLIVSSYGATCALKYHSKL FT KNKNNSKKVQNILSTRQSYDWDQINTLNQKGFFLIGVTFKNFDFNKNKTPITILKSTDL FT ITDINKFKSNLNDYKNLTDYMNNQQLLSNDLIFFILEKAENLDELNQLYLDWLSLISS" FT gene complement(115629..116075) FT /gene="smpB" FT /locus_tag="MCAP_0096" FT CDS complement(115629..116075) FT /codon_start=1 FT /transl_table=4 FT /gene="smpB" FT /locus_tag="MCAP_0096" FT /product="SsrA-binding protein" FT /note="This proteins is 36% identical to the characterized FT E. coli SsrA-binding protein SmpB; identified by match to FT protein family HMM PF01668; match to protein family HMM FT TIGR00086" FT /db_xref="GOA:Q2ST23" FT /db_xref="InterPro:IPR020081" FT /db_xref="UniProtKB/Swiss-Prot:Q2ST23" FT /protein_id="ABC01243.1" FT /translation="MSEHLIVKNKKAYFNYEIIQTYQAGIVLNGPEIKSIRNHDVSINE FT AFVLIRKKEIYILNMNVKKYQFANYIKGLEETRTRKLLLHKKEIIKILNKIKQENLTII FT PIKLYFKNDYVKLEIALAKGKKLHDKRQTIKKRDTERKELRDYK" FT gene complement(116085..118199) FT /locus_tag="MCAP_0097" FT CDS complement(116085..118199) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0097" FT /product="Rnase R (VacB) and RNase II family 3'-5' FT exoribonucleases" FT /note="identified by match to protein family HMM PF00575; FT match to protein family HMM PF00773; match to protein FT family HMM TIGR00358" FT /db_xref="GOA:Q2ST22" FT /db_xref="InterPro:IPR003029" FT /db_xref="UniProtKB/TrEMBL:Q2ST22" FT /protein_id="ABC01595.1" FT /translation="MESKIIEILKTNKHKVSLNKLLTYFNALDYSLIKNYLDQLEKNNK FT ITISLENNIYLLDQIYKKGTIKLNPKGFGFINDINKINDEDHFIAGVDLNNSIHQDEVV FT YILKQEEDNRLKAIVIDLIKRNKVYLIGEINRSFDKRFLDFIPNDKSFDSFRFVIVNKN FT EFKYEEFNIIKAKIISCKERKIFIRLIRIIGNSKKASDRILAIAEEFDIKTSFDKQTLD FT NAKQINLSTDKLEKEFLKRQNNSLVNKTIVTIDGIDSKDLDDAICVEKLENNNYKLFVA FT IADVSYFVRYKTSLDKEALLRGNSTYLANKVIPMLPNILSDDLCSLNPNTKKLVFVCEM FT EFDNNANMLNKKVYESVIISKARLNYDEVNNYFKTKTWTHDDKTKKMLDIAYELYKKLE FT NLKAKKGTISFDVREPKIILDKNLNVIDIKTKTADQAEKLIEQFMVSCNEAVAELIYQK FT DLPFLYRNHNKPDEDELINWYKSLKTFGINPKLTNKQVLDPIFINHTLSQIKEQIKDET FT EVELLNISLLRYMDKAKYGLENIGHFGLASDCYTHFTSPIRRYSDLLVHRYLKQYLITK FT DLEKTSLENNANYVNKVSNIINDTETKSVECEREVIKACMCEYMLNKVNNTYTATISAV FT LKFGIFIQLDNLVEGLVHISNMNSDLVYDETNRILIKPDNTYYRMGQKVKVKLINVDIK FT KRTIDFVLIE" FT gene complement(118235..118591) FT /locus_tag="MCAP_0098" FT CDS complement(118235..118591) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0098" FT /product="preprotein translocase, SecG subunit, putative" FT /note="identified by match to protein family HMM TIGR00810" FT /db_xref="GOA:Q2ST21" FT /db_xref="InterPro:IPR004692" FT /db_xref="UniProtKB/TrEMBL:Q2ST21" FT /protein_id="ABC01489.1" FT /translation="MIRSIYSNLTYFKILLYSNILEVFMINLLASTTKLAQQLILGFEI FT FIFIIAFIMIAIGLLQNKQSQTGLSALNGGNEELFSNSKERGLDKTLSIWMLVLGIIFF FT IIALTISIITNTML" FT gene 118773..119792 FT /gene="nrdF" FT /locus_tag="MCAP_0099" FT CDS 118773..119792 FT /codon_start=1 FT /transl_table=4 FT /gene="nrdF" FT /locus_tag="MCAP_0099" FT /product="ribonucleoside-diphosphate reductase, beta FT subunit" FT /EC_number="1.17.4.1" FT /note="identified by similarity to SP:P37146; match to FT protein family HMM PF00268" FT /db_xref="GOA:Q2ST20" FT /db_xref="InterPro:IPR012348" FT /db_xref="UniProtKB/TrEMBL:Q2ST20" FT /protein_id="ABC01624.1" FT /translation="MAKEQKYYQESVSPIEFVKNDFKGNLRSVNWNVINDEKDLEVWNR FT ITQNFWLPEKIPVSNDLPSWRSLSAEWQQLVTRTFTGLTLLDTVQATVGDVAQIEHSLT FT DHEQVIYSNFAFMVGVHARSYGTIFSTLCSSEQIEEAHEWVVKTESLQKRAKALIPYYA FT GTDPLKSKVAAALMPGFLLYGGFYLPFYLSSRAKLPNTSDIVRLILRDKVIHNYYSGYK FT YQKKVAKLSVEKQAEMKEFVFKLLYELIDLETAYLKELYAGFDIADDAIRFSVYNAGKF FT LQNLGYDSPFSEEETRIEPEIFNQLSARADENHDFFSGNGSSYVMGVSVETEDEDWEF" FT gene 119802..120275 FT /gene="nrdI" FT /locus_tag="MCAP_0100" FT CDS 119802..120275 FT /codon_start=1 FT /transl_table=4 FT /gene="nrdI" FT /locus_tag="MCAP_0100" FT /product="nrdI protein" FT /note="identified by similarity to SP:Q47415; match to FT protein family HMM PF07972; match to protein family HMM FT TIGR00333" FT /db_xref="InterPro:IPR004465" FT /db_xref="UniProtKB/Swiss-Prot:Q2ST19" FT /protein_id="ABC01681.1" FT /translation="MHSNVKKVTDKDVIKPVGVPFVVYFSSISNNTHRFIQKLEIENLR FT IPYEIEQSISVDRDYVLVTPTYSGGGEYVEGAVPKQVIKFLNNKQNRSFCRGVISSGNT FT NFGDTFGIAGPIISKKLNVPFLYQFELLGTQHDVSQIKQILFKFWEDGNNERK" FT gene 120262..122424 FT /gene="nrdE" FT /locus_tag="MCAP_0101" FT CDS 120262..122424 FT /codon_start=1 FT /transl_table=4 FT /gene="nrdE" FT /locus_tag="MCAP_0101" FT /product="ribonucleoside-diphosphate reductase 2, alpha FT subunit" FT /EC_number="1.17.4.1" FT /note="identified by similarity to SP:P39452; match to FT protein family HMM PF00317; match to protein family HMM FT PF02867; match to protein family HMM TIGR02506" FT /db_xref="GOA:Q2ST18" FT /db_xref="InterPro:IPR013346" FT /db_xref="UniProtKB/TrEMBL:Q2ST18" FT /protein_id="ABC01236.1" FT /translation="MNENKNTIVLDDVDDEYIKLNARSKIFSKDQDNFQLDIKAAELYL FT KNYIEPRMKKFSSLKERLDYLLENQYYDSEILNKYSFDQISQLNDYAYSFNHHFPSFMG FT ALKFFNAYGLKTFDTTMYLETYTDRVLMNALFLGNGNFTKAKNLLKDMMLGRFQPATPT FT FLNAAKKHRGEYVSCYLLRTEDNMESICRTISTSLQLSKRGGGVAICLTNLRETGSPIK FT NISGLSSGPIPVMKILEDSFTYADQLGQRQGAGAVYISAHHPDIISVLDTKRENADEKI FT RIKSLSLGLVIPDITFELARDNKDMALFSPYDVQKVYGKPLSDISITEKYYEMLENPNI FT KKTYISARKFFLTVAELHFESGYPYILFEDTVNRRNAHDKKGRIIMSNLCSEIVQVSTA FT SEYSSDLSFIKTGEDICCNLGSLNIDKMMKSGKEFSDSIYNAISALDIVSRNSDLSASP FT SIKKGNAENHAVGLGAMNLHGFLATNKIMYDSPEAVDFTNMFFYTVAYNAFKASNKLAQ FT EFEKFASFDQSRFADGSWFDKYTKCEFDKWTPQTNRVKELFKDYDVQIPSQTDWIELVE FT EIKKTGLANSHLMAVAPTGSISYLSSCTPSLQPVVSTVEVRKEGKLGRVYVPAYQINFD FT NMGYYAMGAYELGPDPIINIVAAAQQHVDQAISLTLFMTDKATTRDLNRAYVNAFKQGC FT SSIYYVRIRQDVLEDSENYECDACKI" FT gene 122386..122675 FT /gene="mcs4b" FT /locus_tag="MCAP_0103" FT misc_RNA 122386..122675 FT /gene="mcs4b" FT /locus_tag="MCAP_0103" FT /product="MCS4 RNA" FT gene 122709..123743 FT /gene="prs" FT /locus_tag="MCAP_0104" FT CDS 122709..123743 FT /codon_start=1 FT /transl_table=4 FT /gene="prs" FT /locus_tag="MCAP_0104" FT /product="phosphoribosylpyrophosphate synthase" FT /EC_number="2.7.6.1" FT /note="identified by similarity to SP:P14193; match to FT protein family HMM PF00156; match to protein family HMM FT TIGR01251" FT /db_xref="GOA:Q2ST17" FT /db_xref="InterPro:IPR000842" FT /db_xref="UniProtKB/TrEMBL:Q2ST17" FT /protein_id="ABC01821.1" FT /translation="MDNKDIYVFGLSASQQLAKEVCHFLGVEQKVVKTTRFADGEILVE FT SIDSVRGKEIYVIQSTSMPVNENLMELLIAIDAFKRGSAEKINVVIPYYGYARQDRKSK FT GRQPITAKLVADLLTKAGADRVIVFDIHSTQTMGFFDVPMDNFHTSQSLANEIVDTIIR FT EKFDPEKCILVSPDYGGLNRVHKVDSYTTNMTNGIAVIGKRRPEPNKAEVEFVLGDIDG FT KTCFIIDDMIDTGGTIISGAKALKANGAKDVYIFACHGLFNGPAKERMTQAIKDGIVKN FT VVVTNTVEIPQERHFEGLKIVSVAPLLANMIKESQEHHSLTEVYNKNKDEIQLKIQDFM FT NNKN" FT gene 124048..124608 FT /gene="pth" FT /locus_tag="MCAP_0105" FT CDS 124048..124608 FT /codon_start=1 FT /transl_table=4 FT /gene="pth" FT /locus_tag="MCAP_0105" FT /product="peptidyl-tRNA hydrolase" FT /EC_number="3.1.1.29" FT /note="This protein is 40% identical to the characterized FT E. coli peptidyl-tRNA hydrolase; identified by similarity FT to OMNI:WD0175; match to protein family HMM PF01195; match FT to protein family HMM TIGR00447" FT /db_xref="GOA:Q2ST16" FT /db_xref="InterPro:IPR018171" FT /db_xref="UniProtKB/Swiss-Prot:Q2ST16" FT /protein_id="ABC01846.1" FT /translation="MKVIIGLGNIGKEYEKTRHNAGFIAIDLLLEKYKYNSIKEEFNSL FT VYTSIINNQKVLFVKPLTFMNNSGLTVKQIINFYKIDLNDLIVIHDDKDLNISRIQFKK FT DGSSAGHNGIKSIINNLNTQDFYRLRIGINKPANQWKIVDWVLSKFSDDELNLLKESFN FT NKSEFINDFTNNKTFTYLMNKYN" FT gene 124739..125182 FT /gene="rplI" FT /locus_tag="MCAP_0106" FT CDS 124739..125182 FT /codon_start=1 FT /transl_table=4 FT /gene="rplI" FT /locus_tag="MCAP_0106" FT /product="50S ribosomal protein L9" FT /note="identified by similarity to SP:P37437; match to FT protein family HMM PF01281; match to protein family HMM FT PF03948; match to protein family HMM TIGR00158" FT /db_xref="GOA:Q2ST15" FT /db_xref="InterPro:IPR020070" FT /db_xref="UniProtKB/Swiss-Prot:Q2ST15" FT /protein_id="ABC01716.1" FT /translation="MKVIFLKDVPGQGKKNEIKEVSDGYARNYLLPNQLVKIATNNSVK FT TLKEHLKADQEEKELAKAQTKQIKKTLEELTLHFKLQTNDDKVFGSISSQDIVNQLKDL FT HRIELDKKKFIRFKNINKIGINYIKVKLDFGIEAIIKVDVKEV" FT gene 125184..126512 FT /gene="dnaC" FT /locus_tag="MCAP_0107" FT CDS 125184..126512 FT /codon_start=1 FT /transl_table=4 FT /gene="dnaC" FT /locus_tag="MCAP_0107" FT /product="replicative DNA helicase" FT /EC_number="3.6.1.-" FT /note="identified by match to protein family HMM PF00772; FT match to protein family HMM PF03796; match to protein FT family HMM TIGR00665" FT /db_xref="GOA:Q2ST14" FT /db_xref="InterPro:IPR016136" FT /db_xref="UniProtKB/TrEMBL:Q2ST14" FT /protein_id="ABC01225.1" FT /translation="MKKELSITELLYAERFVLGVAMSFSNALADIISVLKVDDFSIEAN FT KYIYQAIIDLNSKNKSVSPISVINRLEAINKLDRVGGDVVVYEIAAENYTDQGLEEYID FT VIHKSGVIRKLDAVIKELELKRNSGNTDIDELLKVAQTKLLDIDLSIKRFEIEAVGDVA FT KRVVEKIKELEMKAEIISGVPTGYNYLDLITSGWQESDFIILAARPSVGKTAFSLNLAF FT NAAMKKYPVAFFSLEMPAEQLTQRLFTRLTSIDSTNLRTGKGLSKLNWERIQATKEKLE FT DIPIYIDATPGISTQEIRSKLYKMKRDYDIKLCVIDYLQLIVGSQNKDRQNEVSEISRQ FT LKQIARETSIPIICLSQLSRRAETREDKRPMLSDLRDSGAIEQDADIVAFLYRDDYYKK FT DQSDNQSNLEKEKTELILAKHRNGATGTVFLRFIKDFGVFRDW" FT gene 126601..127863 FT /locus_tag="MCAP_0108" FT CDS 126601..127863 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0108" FT /product="hypothetical protein" FT /note="identified by Glimmer2; putative" FT /db_xref="UniProtKB/TrEMBL:Q2ST13" FT /protein_id="ABC01341.1" FT /translation="MFGSITVFPALTVISCSTTKTHTITTSFNSDVKVDKYVWKNDKFT FT TEGQSTNIQDITKSLNGSTNAYTSTISDVLNLLTRNIQEVRNLKESYDLFRGNAENTSV FT LGYYTGADSKQKKITQEQFYKNLDDSNTHISSLKGLLQFREFVNNNKNSSIVSSWKSSL FT KEDAEQVKKWDENFVKNLNSIVNSSTDNKIKDVKLVSKVSKTNSSFSTFEQDVKTALSS FT SSSISLSEQNNGVIGDIKDLKEHNSYVFGTSLINDPFGMSIVGENKGPDIKSLKPTINY FT SSTKLNKKDSSYVNLADNGNSSKFIYNINQKWELSSEHNFYYMTKDDETLELQITHSIN FT NKDFTFYVQFGGLRKIYTPLIETYAPKTKNDDKKHSFVGWAFNSYRFSNDYSKGNNTPY FT RFKDISLKISDKKINETVANK" FT gene 127990..128916 FT /locus_tag="MCAP_0109" FT CDS 127990..128916 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0109" FT /product="membrane protein, putative" FT /note="MCAP_0109 has 8 membrane spanning regions" FT /db_xref="UniProtKB/TrEMBL:Q2ST12" FT /protein_id="ABC01440.1" FT /translation="MDKFRHLLLDSHNLAITSLCITLSALFIYSIFKLVRVHFKNYSSG FT FRISSKVKFSTRKITYLAMMVGVSVATTTVISLTLPITVLPPIRVAFEGVMIKITGMIF FT GPFVGLTVGVVTELLTLMFVPSYIHVAYLIVAFSFGFWSGMTSYAFKLKKNWLTLVFVT FT VFLLVSAGIMFWLMQGMKEINPETSLFGVKIPADIYPFLFLIMISITLIFIYGIVLVLH FT IRKRQKWLEVMLPIILLCVISEILVTVLVAAWGDYQMLGLRNSSGSENPFITMVVVRII FT QIPIKIFFNTAILTTVYIVLRPLIKVK" FT gene 128925..130250 FT /gene="cysS" FT /locus_tag="MCAP_0110" FT CDS 128925..130250 FT /codon_start=1 FT /transl_table=4 FT /gene="cysS" FT /locus_tag="MCAP_0110" FT /product="cysteinyl-tRNA synthetase" FT /EC_number="6.1.1.16" FT /note="identified by similarity to SP:Q06752; match to FT protein family HMM PF01406; match to protein family HMM FT TIGR00435" FT /db_xref="GOA:Q2ST11" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/Swiss-Prot:Q2ST11" FT /protein_id="ABC01549.1" FT /translation="MQLYDSLSKTKKNLNKKTINLYCCGPTVYNYIHIGNARPVILVDV FT LTRYLKSRNIKINYLQNITDIDDKIILKALDNNLTELEISQKYTKAYLEDLESLNINQP FT DKIILISEKMNEMVKFIKDLVDIKAAYELDGDVYFDIKKYQNEYCKLSGYKLDELISGK FT RIEIDSKKKYSLDFSLWKKTQIGIKWDSFFGLGRPGWHTECVLLIDEYFNHQTIDIHVG FT GIDLKFPHHENERIQFIAKNNKELADIWLHNGHLQINDEKMSKSLGNVILVKDFIKKHN FT KNTLRWIFLTTNYTQPLNISDDLIYQANKFFEKLTNLSKKTIQFIIKNDLKISLIKQSK FT YIDQFNNYMDDDLNTSLVLSLIDSLIKQINKNILDNISDNFNLLISSLSYILDVLGFKD FT VFNYKFKKEIKELFLKWQQLVKDKEFDKADLIRKDLIEQGIL" FT gene 130252..130986 FT /locus_tag="MCAP_0111" FT CDS 130252..130986 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0111" FT /product="RNA methyltransferase, TrmH family, group 3" FT /EC_number="2.1.1.-" FT /note="identified by match to protein family HMM PF00588; FT match to protein family HMM PF08032; match to protein FT family HMM TIGR00186" FT /db_xref="GOA:Q2ST10" FT /db_xref="InterPro:IPR013123" FT /db_xref="UniProtKB/TrEMBL:Q2ST10" FT /protein_id="ABC01291.1" FT /translation="MNHNLIYGKHVIYELLKKHKNMVKEIWVKNLKLLDEFDLKNTKIK FT INVVSENKLDQLLKTNELHQGIIAQIKDFNYTPFDELLNDLNTKEKSLVLVLDQIHDPY FT NFGAIIRSCSLLNVDGIIILDKKQVQVNSTVLKTSSGSAFDIKISKTNNLNNAIKILKN FT NGFWIYATNLNQNSTDMTKTQFANKSVVIIGNEQKGVSELLTKNSDFNIYVPSNKNIDS FT FNASVACSIICFWIANYLNKLS" FT gene 131047..131208 FT /gene="rpmG" FT /locus_tag="MCAP_0112" FT CDS 131047..131208 FT /codon_start=1 FT /transl_table=4 FT /gene="rpmG" FT /locus_tag="MCAP_0112" FT /product="50S ribosomal protein L33" FT /note="identified by similarity to SP:Q06798; match to FT protein family HMM PF00471; match to protein family HMM FT TIGR01023" FT /db_xref="GOA:P51415" FT /db_xref="InterPro:IPR018264" FT /db_xref="UniProtKB/Swiss-Prot:P51415" FT /protein_id="ABC01732.1" FT /translation="MRSSTNKKATLVCVECLSRNYSVNKSGLTQKQRLEIKKFCTTCNA FT HTLHKETR" FT gene 131208..131522 FT /gene="secE" FT /locus_tag="MCAP_0113" FT CDS 131208..131522 FT /codon_start=1 FT /transl_table=4 FT /gene="secE" FT /locus_tag="MCAP_0113" FT /product="preprotein translocase, SecE subunit, putative" FT /note="identified by match to protein family HMM TIGR00964" FT /db_xref="GOA:Q2ST08" FT /db_xref="InterPro:IPR005807" FT /db_xref="UniProtKB/TrEMBL:Q2ST08" FT /protein_id="ABC01829.1" FT /translation="MEKEINIDQVEQNEFIKPKSTQKISKATKKKLKVKKEKQPKNFRK FT WFKELPIRMSKEFFKIRWTGSGSLGKKFLIVIIFMSIFALLFFGVDIVIQHLFRLIKAF FT " FT gene 131539..132183 FT /gene="nusG" FT /locus_tag="MCAP_0114" FT CDS 131539..132183 FT /codon_start=1 FT /transl_table=4 FT /gene="nusG" FT /locus_tag="MCAP_0114" FT /product="transcription antitermination protein NusG" FT /note="identified by similarity to SP:P36264; match to FT protein family HMM PF00467; match to protein family HMM FT PF02357" FT /db_xref="GOA:Q2ST07" FT /db_xref="InterPro:IPR014722" FT /db_xref="UniProtKB/TrEMBL:Q2ST07" FT /protein_id="ABC01399.1" FT /translation="MTYEEIKQLEDELLEAKGQWFVISCQTGHEEKVLGDLQQKIKSAS FT IEDEVFSIKISKANQVSKSGKASIKNKFPGYIFINMIMSEKAWFLIRNTPGVTGFIGSS FT GRGAKPSPLTIEETLNMLVPNIEEIQQAHEEEKEQETKQKNEAVAKKALFTADFKIGDI FT VKVKSGIHENEEGTVKDMDYSKGVAFVAIEMFGRWTTLEVSFKNVEPIKEY" FT gene 132631..138528 FT /locus_tag="MCAP_0115" FT CDS 132631..138528 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0115" FT /product="membrane protein, putative" FT /note="MCAP_0115 has a lipocalin Prosite signiture. The FT lipocalins transport small hydrophobic molecules such as FT steroids, bilins,retinoids, and lipid. They share limited FT regions of sequence homology and a common tertiary FT structure architecture. The protein also has a neutral zinc FT metallopeptidases, zinc-binding region Prosite signature. FT MCAP_0115 has 1 membrane spanning region, N-terminal." FT /db_xref="InterPro:IPR006025" FT /db_xref="UniProtKB/TrEMBL:Q2ST06" FT /protein_id="ABC01302.1" FT /translation="MSKINFKKYVWHKYAISASLIIVATTVVLGSAYKYSTTSIEKLGR FT KNFVDKESFKNAFIDPNALPVTEFSEVHNNKRSVKYDPEKNVVKFNGKEISVDQYLQQY FT YQKYQALPYLNIRYGSFNFYNQYIEAVSPQEFYKFTKWFMKNVSWGPEIITLKSFSIVK FT GVEMSGNSITLGAHSNKNKEETTIKFYPDAFFGTLPIYSNLSGRGNAYESLTYKLNQQV FT LTQKDLEGFLANVGNYNSLANLSQQTINKSYFRGITNVSFLKGQKVFAYKQENWQSKFS FT KTYSELEKKRLEDRSPYLFVIPANSLQEARKKLEVKLSEYKKENDPYKFFEKINPKNVV FT LEEKTISDAEVKQDNTNKIIDKKLVLTFNDKTNYIIHNAFSDVLTEQMTSNNRRTYVAL FT KNYVNFSSAKQELEDKAKNFILQIKENIKLKSNGKEKELEALLKEFESDNNVVSLLKQK FT DLTSDILKKVDKKIFESETKFNQILSKPNSNKAFNEKEYYEIDIAYSLPELITLETLVQ FT HNNRNKLNWRDFYNLNEFVADRSNILKNGSTEFFVYSKFVKEINANENKKYEELKSEND FT LIAASSKVELIDILTKKSIIKPNISQEEINKIILKVDLFDLKKEGQNLLISLRNTTAEK FT ASNKEKFGNKWINISINANAKKDVIRATNDLFAVLGYKKVVVPSVLKEESDLRNPITNK FT LEKTFDVFVDAYENLIDELLEKVPYAAQWLEGPHIKKVLDENGVMQYKLENGKYLGFTK FT DDRIGLWAILKMSDNNFKGISTDFLKFVGAHEYGHHITLNGAQDLGNKGSDPIFISALT FT PGATPDISNYYNREVFDLFLKARTHIELETKRLLDQFGVIKDYGEYAVFNFAKKDKNGN FT INFDTKDNIGIEKDSDIWGVDIEDPDIRKALSNKKRRFLQDFAGLLEAVKERQKENNLT FT TDDDKKWLSAFDLWIANAIDFYSGTLNPTVNSSDQQNQVVKYMYKDDEGVLRFQPASLK FT MLDGILKDGKGNPIKFDISNNGKSVEPIVVKGEKDSKGKYYKIDEVLVHNKDGSPIINV FT PIGVDFRDEKSGYNDQKTIDFINEKIKVVESTIKSLVVDKYSINGWNNENTRISLDSKI FT DLNYPVIKDIFGSKVPNNVSEMYKNIYADYVLNRDVDTGSYKFDEHGKIPKVKYYNLDG FT TKVDRYHNSDTLSSLIYANPSNFRATDDNGELDFKTILWTLYAAGFVVYGNLINAGSSQ FT VLWLAKDKMYMPNVKLQEAYTDLYFLSSLPKEYEQIFEAKKVLKWISKYTPLFVSSNSN FT KTGVWNMVDSEGKFVDFNLLINQDFKKPIKLQLNYSRVKTLDNNVLNGLFGTFKDFGNN FT NLEFDKYDKWLDFVTVDLRKAKYNQEQDRVDWEIEYVKSKVDIDKFKEKYKSEVLDKLD FT SISSMNDNQKQAFKTFYEKANADKTEQIWANEIMRRFSSSYFAMYNSALSIDEIEKNND FT LAWIFDSTHGYGDFKKAKFKIKNPDKSKWEISTDDLLNAYKKLAKDLNVETKQLNLVDS FT LVFDNKTQLYTDQTMTHIYNRKYDLLSIFSSLATAQFHTSPTRDVLDYFYKKTERKVNE FT LFSNYTYNFAEVINRDNLQITYSPSNHDFGNMPSFLSNISEATTGLEYVVDGTTTAKWK FT KRAIKINDRDGRNGIVNAILDYEKLVDSEAKNKAEALNLKYRNSKLSQKSNLSDDSNYD FT NSYFGKFQSINNGWFKDRWYRDFLDFKLYDDNGNPIKDDTIRIKDLENKKVDSRVNAFW FT QFYIQSQGVGKRNISGIWRDANKDAVAMFGYLSSDVANKANYLAFKNQKTGEIKTIKIN FT KQFSSNMFYYKTQNIENEAKYEAAKTQEEKDRIRHTLAHEKYNYKDINGQHTGVGFVSW FT VSDYAIMSKYKNALLTPGQQYSVYFSSDQKGTKDIIKTDLGNFESIAENGKTFSQAPVR FT MQKNKQVAKVDKDGTKYYENTLYVYDQFNGVK" FT gene 138537..141491 FT /locus_tag="MCAP_0116" FT CDS 138537..141491 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0116" FT /product="oligopeptide ABC transporter, FT oligopeptide-binding protein, putative" FT /note="MCAP_0116 is part of a 5 gene ABC transporter FT cassette. It has one transmembrane region; identified by FT match to protein family HMM PF00496" FT /db_xref="GOA:Q2ST05" FT /db_xref="InterPro:IPR016880" FT /db_xref="UniProtKB/TrEMBL:Q2ST05" FT /protein_id="ABC01161.1" FT /translation="MKKITKFLILFTSSTALISITVPLTVINLKAKKTIRDYDLGLVAE FT PINSLNYIKFASVSKVLPSLVEAPLKSGPSENLKRILSIPEIPMGTYNNDVKLVESDFG FT KGITTIDKYFQTKEPSKNPTGRFYALDGFGNTTGTLSADKSTYHPVSILESNNKVQSAN FT ILLNDGQSRWSNNDEVVADDYIDAIHYILDLSTGSQRLTNILQRKFANAQTIVDLQNEY FT IRKFGVTYNNPFQYPEFKKINNKYQYDVFNPNYKNKLYASQIDHILKNSNKYRNKKLTQ FT QQIEQIKKEEKEVLDKLQQTVKKLGLYSGRLYWNYSNKEILSSVPYSPDFDPNADETII FT MLPNLERLNPNLSVEQRKLIPQRKAVKIKKYLFTDPRQKFSKEFDELLKKSKELKNKLS FT VSYSENNSKTYDNEVNKAYGNTNTLSNEFIDSFNAKKYRWHRELALDEYSLRVEYSASE FT PTSVSNVVQDMLSTLFPINRKFVELNGGINDFGLTKERFLTTGAFNLDEVVLGPQGYLL FT LSKNPNYYSAPKTISNKIKIFFSSNPNINAALYDDKYIAATRIPAISQLAYWTNEEYRK FT YMKKTAGFGTIALAFNLDQERYETLDKNSDSRYVYDSDLRNAIYYAINRDEMLNIVGWN FT SSYPVITWTAFGQGSSSFGDAIEIAFDHDEMYTKVDDKKAIPVQNYKHIDHLSKSYNFE FT HVDRTDKGFDLNIAKKYLDLFKQKHPNVKSLTLKYISNSTDEQQNAGIALQDFMRKAFN FT GFINIEIKSLPENVYEYARTKGEFDLLYRNFDAFGSDAYSYVRVFFRTDGIDSKNAKTT FT GFRNNPSGSFTYEKYFSEIGYKLDQFGKVIIDEKHKTEAEKLRKRLRINQKLWDKVLEL FT SFRKVKYKNNKNEVKTETLSEYIERVNSFFTNQFTDDEIKERWTEQSSFGIIGALEKII FT RDAAPVVPLMEVDTYWEISRVNGTNNLFTYSLQFAYDTAFPPSPKLPTDIKEGE" FT gene 141491..142564 FT /locus_tag="MCAP_0117" FT CDS 141491..142564 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0117" FT /product="oligopeptide ABC transporter, permease protein" FT /note="This is part of a 5 gene ABC transporter cassette. FT It is a good match for B. subtilis oligopeptide transporter FT permease protein OppB. Like other genes in this operon it FT is larger at the NH2 end than orthologs; identified by FT similarity to SP:P24138; match to protein family HMM FT PF00528" FT /db_xref="GOA:Q2ST04" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q2ST04" FT /protein_id="ABC01494.1" FT /translation="MKSKTKSSFVNDLSTLPKNAIEHKQYVDFSNKIKYDISWHKRIFN FT IKTPWITSLLRTIWIFIEFFIVAFIVITATFFLINLVPGGTGLTAGLDEAAKAAVEEHY FT GLNQPLIVRYGIYLYNILHLDFGISLSVFPGEKINDFVWVRFYKSFLIGIFSVMLTLLI FT GIPLGVYVGMNPDKLPDHIATILVSIFSSIPSLVFALWLLLLGRSAGMPYIFDQSNLAS FT YILPGFALSLGSIIVYIKYIRTELNRELNSQHCKFIYLKGITKRRFVWTHALKPALFPI FT ATFFPVVIFGSFIGSLFIEQIFFITGSGGLLLNAITSKDFNIILFMVTLFSLLTILSYT FT CRDALYKVIDPRIRRRA" FT gene 142566..143576 FT /locus_tag="MCAP_0118" FT CDS 142566..143576 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0118" FT /product="oligopeptide ABC transporter, permease protein" FT /note="This is part of a 5 gene ABC transporter cassette; FT identified by similarity to OMNI:SMT1571; match to protein FT family HMM PF00528" FT /db_xref="GOA:Q2ST03" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q2ST03" FT /protein_id="ABC01815.1" FT /translation="MSKLSELFKAWHNRKKRAELSPTNIDGFNLAPNKLLRPLAFQQWQ FT IVGNLLEFSETNKMHNQKNAFVEFFYRFSRSFAGVFGFVILSSLIILSLIIPLTTKDPL FT IIDVENRNETFFTNGHILGTDALGRDLWARLWHGLRYSLTLSVVATFIQVIIGLFIGIM FT MGHFRIFDKLMTFIIKIISNVPSIIILITITIIIKPTFWVMVFALSFTSWTGIANQMRS FT QVLRAKSFEWVSASKVLGTPTYKVLLNYLPVLIPLLITEIVFHIPGIILSETSLAFIGL FT SIPNVATLGNLISDGSKNFTVFPRYVLIPSFMLILVTTSIQLMANSVQDTLLRQR" FT gene 143655..145028 FT /locus_tag="MCAP_0119" FT CDS 143655..145028 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0119" FT /product="oligopeptide ABC transporter, ATP-binding FT protein" FT /note="This is part of a 5 gene ABC transporter cassette.. FT This gene is a good match (41% identity) for the B. FT subtilis OppD protein. The start site makes this gene FT longer than orthologs in other bacteria. Other start sites FT look to be worse given that there is a potential RBS at the FT current start site location but not at other sites farther FT into the gene; identified by similarity to SP:P24136; match FT to protein family HMM PF00005; match to protein family HMM FT TIGR01727" FT /db_xref="GOA:Q2ST02" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q2ST02" FT /protein_id="ABC01372.1" FT /translation="MPIPLDLFEIKDKTNKSYLQSFINYWKNKLVIIKNLFNKSEEQQN FT VDVFKNVQQEEVFGKLVNVAAHIDDVYLSFKNPANPREKNVVLRAPSLKIYEGKVHALI FT GESGSGKSVITSLLYGLSGSNSVIESGSVKLYGLEVHNFNELEWEKSKLRGRIISAVFQ FT NPMSILDPTMKIGNQIIEGMLVSKIVQTKKQAYEQALNYLKLTKINNPEQIMKKYPHEL FT SGGMIQRVAIACIISLKPKILVMDEPTTALDPTVQALVLDVIRELQEQFKIAIAFITHD FT LGVVASIADFINIMYAGQIVESGTKEEILLNPQHPYTWGLITSMPDYNKGEKLQVIRGS FT VPANLNKIEGDAFAIRNDYALDIDFFEEPPIYQISPTHFVKSNLLSSQAPKYSPPKIIL FT NLWKKYDKTLNAIYGDDIFVDDKVYNNYKIKSDQQNSKVALKLKENKELLEKQEQERL" FT gene 145104..146357 FT /locus_tag="MCAP_0120" FT CDS 145104..146357 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0120" FT /product="oligopeptide ABC transporter, ATP-binding FT protein" FT /note="This is part of a 5 gene ABC transporter cassette; FT identified by similarity to SP:P24137; match to protein FT family HMM PF00005" FT /db_xref="GOA:Q2ST01" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q2ST01" FT /protein_id="ABC01129.1" FT /translation="MLNAYKDKKSVVEIRNLDIVYGFGAKEFTAIKDLNLNIYDGEVLG FT LVGESGSGKSTIGRSIIGLTPHSFGQIKILDRIIPKNIDRGNKFSKKHKDIINFMVNKV FT QMIFQDPTNSLNPFKDVKTVVGEGLSNTKNARLIYITDFDEKVYNNIVSQVNQFDKVTD FT KLPDYTDQMAKLTFNLDNSYKVVFKDLLKTIDEYKNSDKDFFTPFYNKLIESEKQRQTL FT VELSEKECKQRLIIEILKQVGLDESVLSRYPLEFSGGQQQRLGICRSVVLRPKLLIADE FT PISALDVSIQAQVINIFNELKKKYNLTILFIAHDLRMVEYISDRIAVINKGVLLEIGPT FT NEIINNAYHPYTKSLLDAVPSIESEKGSLIGTIYDHNIHKYDENNQPSWHHVGNNHFVL FT ATESELAVYKFEKQKLNK" FT gene complement(146389..146817) FT /locus_tag="MCAP_0121" FT CDS complement(146389..146817) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0121" FT /product="membrane protein, putative" FT /note="MCAP_0121 has 1 membrane spanning region" FT /db_xref="UniProtKB/TrEMBL:Q2ST00" FT /protein_id="ABC01674.1" FT /translation="MQNKTGLSLLEDVFINNYYNKIDFIKMIFSKEQINQLNSITNLNQ FT LLIDLKQLLEQQKIINQNKISDYYLQLKQTNKKILNKLWLWWLLPVIGMFIFFIIYNNR FT LQNPYYANQLVDIKVKITDLEIKNIYITKLIDEILNNN" FT gene 146872..147651 FT /locus_tag="MCAP_0122" FT CDS 146872..147651 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0122" FT /product="membrane protein, putative" FT /note="MCAP_0122 has 6 membrane spanning regions; FT identified by match to protein family HMM PF02660; match to FT protein family HMM TIGR00023" FT /db_xref="GOA:Q2SSZ9" FT /db_xref="InterPro:IPR003811" FT /db_xref="UniProtKB/Swiss-Prot:Q2SSZ9" FT /protein_id="ABC01724.1" FT /translation="MKGFYMYYLGIILASVVGYFLGSISWSIIIVKKVGNIDIRTIGSG FT NPGATNTVRALGKKWGLVVAFLDALKVIFTSIIAILLSLIPSSLFSQTSYFIPCIFALI FT GHCFPIYYKFKGGKAVSCFLGLLFVVNILYLIIFLIVWFISVAISRKVSVASIFSAFFV FT LIIMWIPYLNGVSYFIWQWNGLEQFSVAWKNYILFSLLNSFHYWFSNIWASGMLEGNII FT VLIGGLILGLRHSQNIKRIKNKTEPDTFPRKKQAIKN" FT gene 147705..149243 FT /locus_tag="MCAP_0123" FT CDS 147705..149243 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0123" FT /product="ABC transporter, ATP-binding protein" FT /note="This protein has two ATPase domains; identified by FT match to protein family HMM PF00005" FT /db_xref="GOA:Q2SSZ8" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q2SSZ8" FT /protein_id="ABC01298.1" FT /translation="MSLIVLENITHQNGEKVLYKNSEMRINKGEHVALVGPNGAGKSTL FT LNIIAQKITPDHGTIQWHPKAKIGYLDQHQEVDPNITSEEYLKDAFKNLFEIEARIHKI FT YEDMAIEYKESDLIKALELQDYLTSHNFDTIDKTVGNLVSGLGINPNNMKKKLSELSGG FT QRGKILLAKLLLKNDDFILLDEPTNFLDIEQVEWLINFLNNYENAFLMISHDIEFVNRV FT AKIIFAIENQKINRYVGDYNKYLELSALKADQYDKARESQQQQIAKLKDYIARNAARFS FT TAKSAQSRQKQLDKMDVLDERKKLVKPKMSFKYKRPNSAIVVKSQNLEIGYNFSLTAPL FT TFELREGQKCIVKGYNGIGKTTFLKTVSNQLKPIGGWCKLGDGVEVRYFEQVEKFHEYE FT NPISYLSSRHPQVLEPEIRSTLSRFGIRSELMLNPMNDLSGGEQTKVRLASLSLEPASL FT LILDEPTNHIDVLAKESLLEAIKEFQGTVLITTHDINFETNWADKILNFEDLVE" FT gene complement(149275..150072) FT /locus_tag="MCAP_0124" FT CDS complement(149275..150072) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0124" FT /product="hydrolase, TatD family" FT /note="identified by match to protein family HMM PF01026; FT match to protein family HMM TIGR00010" FT /db_xref="GOA:Q2SSZ7" FT /db_xref="InterPro:IPR018228" FT /db_xref="UniProtKB/TrEMBL:Q2SSZ7" FT /protein_id="ABC01642.1" FT /translation="MNISGLYDTHCHLNDNRFIDIDMTSNEIVFEAKRSGVKYINNIGY FT DVKSSKTAIFQANLSPNVFAVVGIHPSQIHLYSEQAFQIIEELANSNKVVGIGEIGLDF FT FETNKYEKEQIQGFKKQIEIAQKLDLPVVVHLRDATKHFRVYEIAYKIFKEKRVKKGVI FT HAYRGPLEWALKFIELGFYISFDAAITHEIELEQVVKNISLNKLLVETNSPFLPPTPYK FT KGLSYPKYLPLIVKHIAKIKKVSDSIVAENTKNNAERLFLRSY" FT gene 150259..151485 FT /gene="ilvA" FT /locus_tag="MCAP_0125" FT CDS 150259..151485 FT /codon_start=1 FT /transl_table=4 FT /gene="ilvA" FT /locus_tag="MCAP_0125" FT /product="threonine dehydratase" FT /EC_number="4.3.1.19" FT /note="identified by similarity to SP:P11954; match to FT protein family HMM PF00291; match to protein family HMM FT TIGR01127" FT /db_xref="GOA:Q2SSZ6" FT /db_xref="InterPro:IPR001926" FT /db_xref="UniProtKB/TrEMBL:Q2SSZ6" FT /protein_id="ABC01520.1" FT /translation="MSHPFSVDEIKQIHQEISKIIHYTPLHYADKLSALTGNNIYLKLE FT NLQKTGSFKLRGATNKINKLTNEEKKHGIIAASAGNHAQGVAFAATNLGLKSTIVMPEN FT APMAKIQATEKYGGKVVLSGRFFDDALAKAIELKEKENLTLIHAFDDIEIIKGQATIAY FT EIDQQIKNIDYCLVPIGGGGLMSGIATYLKQVNPNIKMIGVEAANVNSYQQAKALSRPV FT MIDSKPSIADGIAVKKVSDLTFSILNQYVDDVVVVSEEEIAEAMLFLMENCKFVTEGSG FT AVTAAALMFDKLNIKNQNKTIVGLVSGGNIDIAMVGNIINKALIKTNRRLVLSVNIPSD FT NKEILNVINIINSCGAKIFKIKTNRDIMYLELSEIHATFIIDLSNTDQQQQIIDKIIQA FT NYKITSITD" FT gene 151701..153290 FT /locus_tag="MCAP_0126" FT CDS 151701..153290 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0126" FT /product="membrane protein, putative" FT /note="MCAP_0126 has 12 membrane spanning regions" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q2SSZ5" FT /protein_id="ABC01209.1" FT /translation="MELQKQKNKSLITLIIFWILVGITTTLVYNLEWFIQKVIIFNGSL FT QADLNAGTAIIDKNLTIVFSEHNIKTIDDFYIKLNDVIDKENHIITKYYNININSAFKK FT EGLLFSAAALIASFISGPILVYAITKKKTYKFFILPILLGLSIMMFFIMPVISSVLLLA FT TVFTPLFGMLYSYRTALDSWATSVARKTNVKISFVRGFYEVGAGLGSIGLTQLLLHLNY FT YKRTISWSDATPYYVVGAFYVILTIFLWLFMPDNIFDKLHVKEERVSQKKYEEVKQANK FT LNQELTLKQIILNKNFIIGLLFFLIVIGTVQAFGSIWVNTVENFTSTTKSFNSPQHIGY FT QKAFSIPVQLLLSYLILQVVTKIKLKQFLLWAAILASISWFGIGTIVYIVKPKNPIITS FT LIGGIGGAITGTLAVALGYEFISRVTTINTRPATFVVFNSITYGFGGIIFVGVNTFLSK FT APVFGISGTGGYWVWLICGISCLFAILLLILFFKEPEFITREIDDKTFNKHLLVPAHHK FT PDELKQTKNNRK" FT gene 153295..154158 FT /locus_tag="MCAP_0127" FT CDS 153295..154158 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0127" FT /product="membrane protein, putative" FT /note="MCAP_0127 has 1 membrane spanning region" FT /db_xref="UniProtKB/TrEMBL:Q2SSZ4" FT /protein_id="ABC01332.1" FT /translation="MILSLYVWIQLKKKLKKRVSYQESLDFEYQIANENGYSFDHLDLS FT GFNKEYKTITTRFGDLKLFKHGVGDTVIIYCHGILSNNRNAIKFLDYCFSRNITLIAYD FT NFGWGESAKFGKCTLGKKEADLLKDVIDFVKKDLKPKKLVIYGESMGGGTIYSFISKYK FT NKIADKFIVDAGYNSFFDNVIQSGFKKVSYLIYLTYLFLPLLFLISHYPIKKFIKLKDF FT KNLNNVLHIQSKSDTLVNYNHVKKHLKYLKNQHIYSKNIRHCMGIDYLRDEHYKVLDKW FT IKVEKK" FT gene 154344..155120 FT /gene="nagB2" FT /locus_tag="MCAP_0128" FT CDS 154344..155120 FT /codon_start=1 FT /transl_table=4 FT /gene="nagB2" FT /locus_tag="MCAP_0128" FT /product="glucosamine-6-phosphate isomerase" FT /EC_number="3.5.99.6" FT /note="MCAP_0749 nagB1 is a paralog of MCAP_0128; FT identified by similarity to SP:O35000; match to protein FT family HMM PF01182" FT /db_xref="GOA:Q2SSZ3" FT /db_xref="InterPro:IPR006148" FT /db_xref="UniProtKB/TrEMBL:Q2SSZ3" FT /protein_id="ABC01795.1" FT /translation="MFYLKIIIFDKIEDLQEYCAQLFIDQVKQNPFAKIGFATGVSPVD FT CYKLIIKHSKQNNISWKNITTFNLDEFVNISKDHKQAFIKQMKDNLFDHLDIDPKNINF FT LDCQTSDPKKECQRYENLIRSVDGIDFQYISLGINGHMAYNEPNTSFNTDTHVVKLTKE FT TILDMVNKKKFNSLDDCPTHAMTMGIQTLLNWTKKAIMVSYGIHKALVTKQMIEDKPNE FT QITASFLQLHKDCTYILDKDAASLLDKKYLEIAERR" FT gene 155124..156806 FT /locus_tag="MCAP_0129" FT CDS 155124..156806 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0129" FT /product="PTS system, N-acetylglucosamine-specific IIBC FT component, putative" FT /EC_number="2.7.1.69" FT /note="identified by match to protein family HMM PF00367; FT match to protein family HMM PF02378" FT /db_xref="GOA:Q2SSZ2" FT /db_xref="InterPro:IPR018113" FT /db_xref="UniProtKB/TrEMBL:Q2SSZ2" FT /protein_id="ABC01850.1" FT /translation="MHNLKTKTKKDKENSFYNNLLNALQRLGKTLMFPIAVLPIAALLA FT RFGALIQDPLANGGSNISEIQKFIGLVIATPGQIVFDNLAIIFAIGISFGLAKDNRGEA FT ALVGGIVWFGMTALLKEGLIPTFIWKNVLTSDKILIKQGDQMIPATQLLYFLKDNTVKY FT QLDTGVVGGIVVGCLVALIYNKYKDVTLPQALSFFGGRRFIPMLGVLMIVPLGLGFAIV FT WPWAQFILIKIGTTLSQANGFTKGFAVGTYGFLNRIVQPFGLHHILNTFVWFQLPIEGK FT LLADGSTAIINGDITAFQKGLIGSGLFTSGFFPLFLGGLPGVALALILVSDKDKKKQMT FT AFYGGSAFVAWITGIDEPLIFNFIFISPILYVLNALFTGIFYMFVTWSQIALGIGFSAG FT FIDYVVSFWTSWQISTKIGWHANPLWIWVFAVAMFGLYFTTFYFLIKKLNIPTPGRENQ FT LGFKKEISEPITTSNNKQNKYELMAKRILDIVGRDNIELVESCSTRLRLTVKNNSKQII FT DDEKIKQAGGFGVVRLGQKNYQIIIGTDVEHVADKLKEILNLN" FT gene 156937..158388 FT /gene="gltX" FT /locus_tag="MCAP_0130" FT CDS 156937..158388 FT /codon_start=1 FT /transl_table=4 FT /gene="gltX" FT /locus_tag="MCAP_0130" FT /product="glutamyl-tRNA synthetase" FT /EC_number="6.1.1.17" FT /note="identified by similarity to SP:P22249; match to FT protein family HMM PF00749; match to protein family HMM FT TIGR00464" FT /db_xref="GOA:Q2SSZ1" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/Swiss-Prot:Q2SSZ1" FT /protein_id="ABC01842.1" FT /translation="MSFRLRYAPSPTGFLHIGNTRTALMNYLFAKHYNGSFIVRIEDTD FT LARNVEGAIESQFENLNWLGIYPDESIFNPNDQKYGKYMQSQKFDRYKQLAEQLVDQNK FT AYRCFCTSEELEKDYEDQTSKGIIATKYSQKCLFLTQDQIQKNLENKKEYSIRFKVPKN FT KTWTINDIVRGDVSFDSKDLGDFVILKSNGVATYNFAVVVDDYDMQITHVLRGEEHISN FT TPRQMMIYDAFNWNYPMFGHLTLIVDNTGKKLSKRSGNALFFIEQYKKQGYLSQAIFNY FT IALLGWSPPGEQEILSQNELIKIFDEKRFSKSPSTFDMVKMKWINSVYMKKLDDDKYLE FT FVKSFINTNKFDITSKSETWLNHLLLLYKKELEYAEQINDHLDLFFNKNTLDNNTIDVL FT NNLTNYKNVVEIFKNQINVLKDWTIENIKQIIKDTSTLANVKGKDLFMPIRIFATKSEH FT GPSLADVIYLLGKTTVLNNINSLER" FT gene 158391..159604 FT /pseudo FT /locus_tag="MCAP_0131" FT /note="conserved hypothetical protein, HD domain protein, FT authentic frameshift; this gene contains a frame shift FT which is not the result of sequencing error" FT gene 159630..160067 FT /locus_tag="MCAP_0132" FT CDS 159630..160067 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0132" FT /product="DNA-directed RNA polymerase, delta subunit, FT putative" FT /EC_number="2.7.7.6" FT /db_xref="GOA:Q2SSZ0" FT /db_xref="UniProtKB/TrEMBL:Q2SSZ0" FT /protein_id="ABC01275.1" FT /translation="MSKVRNLDLVYSYLQNTKTPSSLTEIWKSISKDIISQKKDEISVI FT ADLYGDMVLDNRFALTTDNLWALSSNSSVENVKKQYDDFINDSDHKHRYDDLDDELAID FT DDMMLDEDYDNDDFTQDIDDFDEDFDDIDNSYIDDDDEYNQ" FT gene 160160..161758 FT /gene="pyrG" FT /locus_tag="MCAP_0133" FT CDS 160160..161758 FT /codon_start=1 FT /transl_table=4 FT /gene="pyrG" FT /locus_tag="MCAP_0133" FT /product="CTP synthase" FT /EC_number="6.3.4.2" FT /note="identified by similarity to SP:P13242; match to FT protein family HMM PF00117; match to protein family HMM FT PF06418; match to protein family HMM TIGR00337" FT /db_xref="GOA:Q48965" FT /db_xref="InterPro:IPR000991" FT /db_xref="UniProtKB/Swiss-Prot:Q48965" FT /protein_id="ABC01602.1" FT /translation="MAKFIFVTGGVVSGLGKGITASSIGALLKASGLKVFMQKFDPYLN FT VDPGTMSPYQHGEVFVTKDGGETDLDLGHYERFIDEELTKLSSTTSGKIYLSVIKGERK FT GDTSGKTIQVVPHITDAIKNKVYQAAKQSQADVIISEIGGTVGDIESQPFIEAIRQIRL FT EQGKENVMFVHVVLLLWLAASKEYKTKPIQNSVKAMASLGIQPDVIVCRSDSSSPKDIK FT EKISLFCNVPITNIIDAIDQDSIYRVPLALAKQNLQDIIIEQLQLKANAIDLTSWKQFN FT KKIDSSSQEIEISFVGKYIELQDAYLSVLESLKIAGWEFNKKIKIRWIQAETLNESNYN FT EILKNSQGILVPGGFGKRGIEGMMLASRYARDNDIPYLGICLGMQIATISIARDLLNWT FT DADSTEFNKNTTHPIFDYIKGIDRDNIGGTLRLGTMVTKLEKDSLVSKLYNSDVALERH FT RHRYEFNNKYKKDLESVGLRFSGIYEEKNLVEVIEMPSLKFFVASQFHPEFTSRPNKPT FT PLFKGFIKAIIENNK" FT gene 162260..163033 FT /locus_tag="MCAP_0134" FT CDS 162260..163033 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0134" FT /product="membrane protein, putative" FT /note="MCAP_0134 encodes tandem sequences containing the FT lppQ-Variable-Repeat-Peptide motif. MCAP_0134 has 1 FT membrane spanning region; identified by match to protein FT family HMM PF03382; match to protein family HMM TIGR02167" FT /db_xref="InterPro:IPR011889" FT /db_xref="UniProtKB/TrEMBL:Q2SSY8" FT /protein_id="ABC01509.1" FT /translation="MVTIKQIPPSVKKVTSMLPTEIQSLYGAFSNRHEGYKEVTGFENW FT DTSKVIDMSYVFSNNATVDVDLSNWKTSQVINMKGMFKGATKFNNGGKSLNWTTSNVTS FT MESMFEGATNFNQDLKGWKVDKVTENKNFSRGSGFYSYEHKKPKWNGVVEINDPIEKKV FT EDKQPKIIYHPSPTPPKRKSDPIKLVKLIPPTISPKSLPKTTPGLEIPKANVATTNQQS FT KKLSTPAIVGIVVGSQVVLTSLAVGAPYLIKRFKK" FT gene 163048..164022 FT /locus_tag="MCAP_0135" FT CDS 163048..164022 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0135" FT /product="membrane protein, putative" FT /note="MCAP_0135 encodes tandem sequences containing the FT lppQ-Variable-Repeat-Peptide motif. MCAP_0135 has 2 FT membrane spanning regions; identified by match to protein FT family HMM PF03382; match to protein family HMM TIGR02167" FT /db_xref="InterPro:IPR011889" FT /db_xref="UniProtKB/TrEMBL:Q2SSY7" FT /protein_id="ABC01741.1" FT /translation="MKKIILLLSTNILIFTFLTFLSIKWPSSINYLQSVSRKINRKDEK FT SHVYNTDKTEITEIGYWTRNGAITIKGIPKTVKKVSSSLPPEITSLYGAFSYRNTDDVI FT VTGFERWDTKNITDMSYVFSNNSIVDIDLSFWDTSKVTNMNGMFKNAVKFNNGGKPLKW FT TTSNVETMESMFDGATNFDQNLKDWKVDKVKNNKNFSRGSIFSNYENKKPKWKGVIEIN FT DPIIKKPETTVPEVIIHPSPPKPKVNIPLTRIITPATKWSPILKPAPDSKKGLEIPKAN FT VATTNQQSKKLSTPAIVGIVVGSQVALTSLAVGAPYLIKRFKK" FT gene 164174..165067 FT /gene="fba" FT /locus_tag="MCAP_0136" FT CDS 164174..165067 FT /codon_start=1 FT /transl_table=4 FT /gene="fba" FT /locus_tag="MCAP_0136" FT /product="fructose-1,6-bisphosphate aldolase, class II" FT /EC_number="4.1.2.13" FT /note="identified by similarity to SP:P75089; match to FT protein family HMM PF01116; match to protein family HMM FT TIGR00167; match to protein family HMM TIGR01859" FT /db_xref="GOA:Q2SSY6" FT /db_xref="InterPro:IPR013785" FT /db_xref="UniProtKB/TrEMBL:Q2SSY6" FT /protein_id="ABC01691.1" FT /translation="MPKLYHKKLVNAKQMVSDAHKKRYAIGHFNINNLEWTKAILEAAE FT ASKTPVIIATSEGAIKYMGGVDAVVGMVNGLLDYLNITVPVALHLDHGQSLEMAKKCIL FT AGYSSVMFDGSHFPYEENLKMTKELIEFAEEYEVSVEAEIGSIGGEEDGVIGQGELGDP FT QQAEEISKTGITMLAAGIGNIHGKYPSWWQSLSFETLEKLQQACKMPMVLHGGSGIPQD FT QVKKAISMGISKINVNTELQLAFRDATRKYIEEEKDLDDAKKGFDPRKLLKPGYDALKA FT TFLELTSWFGCQGKAN" FT gene complement(165285..166778) FT /locus_tag="MCAP_0137" FT CDS complement(165285..166778) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0137" FT /product="membrane protein, putative" FT /note="MCAP_0137 has 12 membrane spanning regions" FT /db_xref="UniProtKB/TrEMBL:Q2SSY5" FT /protein_id="ABC01138.1" FT /translation="MTKTTKPNPFTNFINKTFKTFDKKTLFVIMLLAVSDTLVFIFPSY FT LRNVMSSEVISLYLGVKTEHLSQASAIYGYISLAIYFFGSILGDKLSVKWLTIIGLATF FT GVSGAWYGSIGLTAGGALVQSANGPILNETGVQSRFIQLCIIYAIWAFAKIIFWAPLWK FT LLSQQGKPEQNGILNGIHGSFNGFAGTVLVSIGYILFFVLTPLFAGKNISTPSVWNFSI FT MIYMFCGLIALTVILLIFTVKEDKSEKEENASFNIKDVFGILKNVKIWLVSLVVMGVYM FT YQMGLSILVSYLEVSLQVAAVAVFVGGLLRTYLFRFIFSAPAGKIADKTGKYVKFLMIG FT ILIGTFLVTTVLLLPGFNVGWIIKKAPKWYLWTVRIIVYTFFLCLGALCWGLVTNRWAT FT LFEIGIDRKHYASAVGIVSVVAFTPDAWFQQLQAVLIAKYKVADPLIKGGYNNQFAYQI FT LMIVIVIISLVGFAAGALLIYLNNKDKKIAQTQLQTTKK" FT gene 166983..168434 FT /locus_tag="MCAP_0138" FT CDS 166983..168434 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0138" FT /product="membrane protein, putative" FT /note="MCAP_0138, which has 11 transmembrane regions, is FT conserved in all the mycoplasmas except Ureaplasma FT parvum,M. arthritidis, and Phytoplasma asteris. All FT orthologs have 10-11 transmembrane helices." FT /db_xref="UniProtKB/TrEMBL:Q2SSY4" FT /protein_id="ABC01267.1" FT /translation="MVKNKISKFVKENFVLFILALADVAIMAIPFYMDNFIPNMNLNFK FT LNQADYSQAGAVYGFVAIPCYLLGSYLGDKFRAKSLVVIGILITGALGVWYVLVPVIPI FT IAGNNSATLTGGLLIATKVQLYFIFGGFAFATCALFWAPLWKLVKNQNTEGLPEELKEK FT QVGKNNGMQGALNGLIGLTIALFGTLLLSLQNSEKLGKIGGEHGISIAFLILISVYAAL FT IIISAILAIFFIKEPKVEEPLSFSVKAMVNVLKQKNIYLLSILVLGVYMLQMGLSSYVN FT YMRNIFYVPAVAVMIIGIFRTYVMRFMISGWFGRFADKQKSYIPLILIGLFIGMVLITI FT GIVLPGFGKDYPNEESIKKTSGIILQVAACFNLVLMGAVTWAVVTIRWSPIGTDLNIQN FT DSYAAAVNIVSVIAFTPDAFFKQIRSAIESKHHMQIDGVQVADKLGNQLILLVVVIFGF FT IGFLAGVALHFSLKADKKKMMLLNK" FT gene 168519..169235 FT /locus_tag="MCAP_0139" FT CDS 168519..169235 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0139" FT /product="glycerophosphoryl diester phosphodiesterase FT family" FT /note="identified by match to protein family HMM PF03009" FT /db_xref="GOA:Q2SSY3" FT /db_xref="InterPro:IPR004129" FT /db_xref="UniProtKB/TrEMBL:Q2SSY3" FT /protein_id="ABC01556.1" FT /translation="MNIMILVAHRGFRGLYGENREYDFKNALTICKAVEFDIRLTKDDK FT IIIFHDHNFKRIGNLNRGVKTLTYDEITKIPYFVENPLATPILFEVFMDKYFDQYEMIN FT VEIKPDHYTEEELDIIFNAIKKYCNKGVEIIVSSFSPVVLKEILKRKENYYKSGYLFEK FT MSQFDVQLGKKFDFLHPPITLLKKQSNCELFKKLNIPLNVWTFKKMSDVETIHKMYKDL FT INGYISDYPDLYPKTN" FT gene 169372..169650 FT /gene="rpmE" FT /locus_tag="MCAP_0140" FT CDS 169372..169650 FT /codon_start=1 FT /transl_table=4 FT /gene="rpmE" FT /locus_tag="MCAP_0140" FT /product="ribosomal protein L31" FT /note="identified by match to protein family HMM PF01197; FT match to protein family HMM TIGR00105" FT /db_xref="GOA:Q2SSY2" FT /db_xref="InterPro:IPR002150" FT /db_xref="UniProtKB/TrEMBL:Q2SSY2" FT /protein_id="ABC01653.1" FT /translation="MPKIDIQPKYFDQAKFICTTCANEWVCGTSKGEEVRVDVCSNCHP FT FYTGAQTYANVAGRVEQFRSKFAKRDTIKAEAQKQSAAQKAKNQENK" FT gene 169725..171653 FT /locus_tag="MCAP_0141" FT CDS 169725..171653 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0141" FT /product="hypothetical protein" FT /note="identified by Glimmer2; putative" FT /db_xref="UniProtKB/TrEMBL:Q2SSY1" FT /protein_id="ABC01666.1" FT /translation="MSYKIKDLTFRSKKSSLDKVNLIADDGQIVDVVIDNEQQMNFFKK FT VLLGKKKNRTGRFQIDDFDIINRGFTRKNVEFIKHDTWIQRVIPSKWVLILSLLFDQNF FT LRSASVKYIGKKYEYLSLVASKGEINDKKLRQNIDNLISEYINIKTKEEQKALYDAIND FT LKKHNQKKYLEIPEQWPIQIKLLSKAIENLKTELRTASIMLMFQQTLWDNVYTLNELRD FT NCSCEYNAKHSSNKKLKKSWKKFTYQQTYYAVNKQLKIISAKIVELRTSIFHKNRKLNQ FT FKAQWNFEFRKYLKALALLENDKPKRFTWVEQDKKQEYFIDWRKANHQTLIDIENKQKQ FT EFIEPIRNTTKALGEEIIFLIHQYHERVLSDELEYVEKRKFLNMKKQKKKEIKSVFKQA FT VEKMTNSVNKYNIKFEWFIKSSVKYLSLNIVYLKILKAINLSKRNIIFSNITKHLSEKE FT FFQLFETIKSIQHNHLLMTFIFLNDSIEDVYNLDKKIYFVNNQLEVKPETQQELKKELK FT EIPIIDIFDILLKRSESNINKISYELIDKNQIKIQDRRWILNNCVLKNSGFVFFNPFKI FT SLEFEAPNDLCLEVKIIKSKKYVDKFMHCAITKNKEKIYFYNKDKTFVENEKTMLYINK FT NAISNII" FT gene 171663..172613 FT /locus_tag="MCAP_0142" FT CDS 171663..172613 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0142" FT /product="DHH phosphoesterase family protein, putative" FT /note="identified by match to protein family HMM PF01368; FT match to protein family HMM PF02272" FT /db_xref="GOA:Q2SSY0" FT /db_xref="InterPro:IPR003156" FT /db_xref="UniProtKB/TrEMBL:Q2SSY0" FT /protein_id="ABC01359.1" FT /translation="MLDQKKSKLLLDKISQYQNIIIAKHKQPDWDAQGSAIGLANIIND FT NFKNKTIYVVGSRISDDNSFFIDEINLSDEFVKNSLIITVDTATKKRVDFNRFDLSSDS FT FKIDHHINVEDYCNNDLIDDSSISNTQVISLWALENNLFISPTAAYNLYLGLLTDSNRF FT LYDKTNPTTFYVASKLLQAGANLKKAHDFLYVSELKLRQWMMYSFSKMKLTNTGIAYIV FT LLDEDLKDWDLSYEETKLALSVMSGIKEIKIWFTIIQVEDILKVSLRSRDFSIDKIANK FT YNGGGHKLASGAEISSLDQIDDLINDLEQLIKGEV" FT gene 172616..173245 FT /gene="tdk" FT /locus_tag="MCAP_0143" FT CDS 172616..173245 FT /codon_start=1 FT /transl_table=4 FT /gene="tdk" FT /locus_tag="MCAP_0143" FT /product="thymidine kinase" FT /EC_number="2.7.1.21" FT /note="identified by similarity to SP:Q03221; match to FT protein family HMM PF00265" FT /db_xref="GOA:Q2SSX9" FT /db_xref="InterPro:IPR001267" FT /db_xref="UniProtKB/Swiss-Prot:Q2SSX9" FT /protein_id="ABC01477.1" FT /translation="MTELDINEIEAYNSNKMGWIELITGCMFAGKTEEFIRRLKVLSYA FT KKRVLAFKPSIDNRYSVENIISHSGSKLDSYLVKSSDEIKQIVEKENQIQQVDVIGIDE FT VQFFDENVVDIIEQLADNGIIVIVNGLDKDFRGLPFKNVDKLLVKAEFVTKLRARCHLC FT GSFANRSQRIVNGQPALWDSPLILVDGKESYEARCRKCFISPKKDV" FT gene 173248..174339 FT /gene="prfA" FT /locus_tag="MCAP_0144" FT CDS 173248..174339 FT /codon_start=1 FT /transl_table=4 FT /gene="prfA" FT /locus_tag="MCAP_0144" FT /product="peptide chain release factor 1" FT /note="identified by match to protein family HMM PF00472; FT match to protein family HMM PF03462; match to protein FT family HMM TIGR00019" FT /db_xref="GOA:P71496" FT /db_xref="HSSP:1GQE" FT /db_xref="InterPro:IPR004373" FT /db_xref="UniProtKB/Swiss-Prot:P71496" FT /protein_id="ABC01154.1" FT /translation="MNAKTYEALETMQKRLFQIQKDLEDENILKDIKKFTELNKEKANL FT EEVVEKFVEYKKAVDHIKDAKAILENEKDSELIELAKIELDENNDKVEHLQQVIEEMLL FT PKDPNDEKNVIIEIRGAAGGDEANIFAGDLLRMYKLYAETQNWKINILEASLGEAGGYS FT QVVFMIKGDRVYSKLKFESGAHRVQRVPKTEAKGRIQTSTATVAVLPEMSEVEIEIRSN FT DLRIDTYRASGAGGQHVNTTDSAVRITHLPTGIVVTSQDGRSQHDNKDIAMTMLRAKVY FT EAEVEKQQAQADATRKNAVGTGARSEKIRTYNYPQNRVTDHRVGLTLNKLDQVMEGNID FT EFIIALINEEQRQKVAEQLKNNE" FT gene 174332..175144 FT /locus_tag="MCAP_0145" FT CDS 174332..175144 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0145" FT /product="modification methylase, HemK family" FT /note="identified by match to protein family HMM TIGR00536" FT /db_xref="GOA:Q2SSX7" FT /db_xref="InterPro:IPR007848" FT /db_xref="UniProtKB/TrEMBL:Q2SSX7" FT /protein_id="ABC01101.1" FT /translation="MNKTIFNILKELQQANISLNKADVYHILEHILNKNYQWIVSNLDY FT VLTKKQLYKLEQISKLLEKKYPLAYILKNKYFYSNNFFINKDVLIPRNESELIIDYVSE FT FIKNNNDLLIVDLCTGSGCLGISCALLNKQNKVILTDISYKALKVANKNIKRFNLKNTA FT CLSGDFISVLIKDNIKANVIISNPPYIDINDQNLDKNVIEYEPSIALFAPNKGLYFYEI FT LIKNIDQIVDVNKKFLIVLEFGWLQKDSIEQLLIKNCLKYNWEFKKRL" FT gene 175190..176662 FT /locus_tag="MCAP_0146" FT CDS 175190..176662 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0146" FT /product="membrane protein, putative" FT /note="MCAP_0146 has 8 membrane spanning regions" FT /db_xref="UniProtKB/TrEMBL:Q2SSX6" FT /protein_id="ABC01356.1" FT /translation="MCKNKDFKVKIINNKFSMRIKDSDPNIEKKNFSIYLRSILGLVVF FT LLALLPFYAYLYLIFKHDSLSFYFTNYKIISKHIDLPSKSQIWGLAILALVFMVIVIAM FT FISFKALVNLSNNKRYKEMIIVLIIIFGILTILFQGISQYFYGYFQDFFNYQVITGLEN FT KIDEFKKITSQFIEFEKKSNNIYNWIDVNNIWWIIFVQIFLMFVTSISLQNITFFEYVE FT NSEDKYINYFVQKNKIIYQNKIKSYVNNIFSFKDKTLSNWLIILVLMICFPILIYIISI FT STRGSEKSLIYWTHQLPNLLNDYRDWNTIFDQYKNQLNLTKSSPLLILSSPIIFLGIIL FT STVLFLLAISIRGQKSSQLVLKTKFILLFSQLAFLILSIFISQLELHKLLVLWNSNDKD FT QIIGYKYVELIKNVVGIEVFNNIDQKLCFLNDIDQKINSIFNDSYIISVCITFLTVSTI FT TGFCIILKGMLDKRLAIDFVRNEFKNKKIFRK" FT gene 176671..177171 FT /locus_tag="MCAP_0147" FT CDS 176671..177171 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0147" FT /product="conserved hypothetical protein" FT /note="SUA5/yciO/yrdC family signature protein" FT /db_xref="InterPro:IPR006070" FT /db_xref="UniProtKB/TrEMBL:Q2SSX5" FT /protein_id="ABC01261.1" FT /translation="MLTDTKINKAIELLKNNQIVILPTDTIYGLSAIYSLENQIKINQV FT KKADINKPLIVLISSLDQLDKLDILDLTDKDFLLNTDPTTVIFKTTSSSIAIRLVKRND FT IKQIINNTGPIISTSVNIHGFDPLTNKKDLINFNKNIEVFFDEELNNNPSKIYSSILKK FT YLR" FT gene 177239..178192 FT /locus_tag="MCAP_0148" FT CDS 177239..178192 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0148" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q2SSX4" FT /protein_id="ABC01085.1" FT /translation="MVIFIVNIKELIHMNSHSLVFNYRDNKHFLQEMHTIIKKRGSKTF FT EEWMVNNNFDSAYVRVTIVNERNGVLAVSGFIKSKAIINKTTLNTILLTNTFTKSKESN FT PLMVNELIQGVVKKYENISDFIYTFSNVENDDVLIRNGFKKIKEYTYFMQWDPNKDAKL FT SVLKRLDLDTNQADFEFVKDELFHSSKNNSLFYIREDGALSIYSLLKYYRNNVFYISNL FT DAIVIFSINNKTFQLIGLYSKNEIDVLELLESIVPKGISLIEFYFVPNIKNKFVVKELR FT KVMAADCQHRSFLYVKESTTNLEASKFVVPLLNRLK" FT gene 178316..179023 FT /locus_tag="MCAP_0149" FT CDS 178316..179023 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0149" FT /product="membrane protein, putative" FT /note="MCAP_0149 has 2 membrane spanning regions" FT /db_xref="UniProtKB/TrEMBL:Q2SSX3" FT /protein_id="ABC01881.1" FT /translation="MKRKIVKRNLALVKKKKFFLDFLKNNNLENVYLKNHDFNKKSNIL FT LNNFIIILKIHNLNYKHYWANISFMNFCIYYLYHKFYKSLSNLKLEQINLTINKIATNR FT KYTSLEINYEKQLLEIAKQYDIKFSNSFIDTYFNNHQIYNYISNSFSQMFDENKKTFAY FT SYCYWLILFVYIKKYLSLELDYKYSYNLFNLEMICNDHYIKNIRNLTLNYFNLLIIKNN FT KWISKLDIKRNKK" FT gene 179023..180552 FT /locus_tag="MCAP_0150" FT CDS 179023..180552 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0150" FT /product="cardiolipin synthetase, putative" FT /EC_number="2.7.8.-" FT /note="identified by similarity to SP:O66043; match to FT protein family HMM PF00614" FT /db_xref="GOA:Q2SSX2" FT /db_xref="InterPro:IPR001736" FT /db_xref="UniProtKB/TrEMBL:Q2SSX2" FT /protein_id="ABC01148.1" FT /translation="MKKPIITVLSLIFMFGLTILGLLLLNFGLFTWPLIGFGIFHLLAI FT IWAFIVLADKKRRFETRIRWFCFIVVIPIIGVLSYLFFGRSYKYKINTSYKLPEIKNKH FT LINELKEVEEILINQIPQFKRAFKTAMISQTNNIFLNSEVEFLKNGNELFLNLFKDISN FT AKSHILLNFYIFKDGKLLEQLTNLLIKKLKENVKVYIIYDFAGSYTVFEESRLKLLKHG FT CQIACFAPVRFPFIKWTANYRDHRKDVVIDNKIGYIGGINIGDEYINLDNKFGYWNDCS FT LRITGNAVSEIQRIFISDYDFYKPFNKKRLIESDLNLNTIYPVKSKNQLVQIVSSGPNH FT EEPLHLSIFINLINSAQKRIWISTPYFIPPQEIRTALINAANSKLDVRILIPGLTDKAF FT LLDQTKQWTRELYKAGVKIYSINNVFNHNKTYLFDDEITFIGSTNLDFRALFADQQTMG FT LIYSKKLNNTISKKFEQDFKNSYLYDHLPNKNINWFRKIIIKIYNIIQPLL" FT gene 180658..181095 FT /gene="rpsL" FT /locus_tag="MCAP_0151" FT CDS 180658..181095 FT /codon_start=1 FT /transl_table=4 FT /gene="rpsL" FT /locus_tag="MCAP_0151" FT /product="30S ribosomal protein S12" FT /note="identified by similarity to SP:P21472; match to FT protein family HMM PF00164; match to protein family HMM FT TIGR00981" FT /db_xref="GOA:Q2SSX1" FT /db_xref="InterPro:IPR005679" FT /db_xref="UniProtKB/Swiss-Prot:Q2SSX1" FT /protein_id="ABC01614.1" FT /translation="MKGGKYMPTINQLVKVNRKAKTWKTKAPALNRGINTLIKKVTKIA FT SPQKRGVCTRVATMTPKKPNSALRKYARVRLTNGMEVNAYIPGEGHNLQEHSVVLIRGG FT RVKDLPGVRYHVIRGTLDTQGVAKRSQGRSLYGVKRPKVKK" FT gene 181185..181652 FT /gene="rpsG" FT /locus_tag="MCAP_0152" FT CDS 181185..181652 FT /codon_start=1 FT /transl_table=4 FT /gene="rpsG" FT /locus_tag="MCAP_0152" FT /product="30S ribosomal protein S7" FT /note="identified by similarity to SP:P21469; match to FT protein family HMM PF00177; match to protein family HMM FT TIGR01029" FT /db_xref="GOA:Q2SSX0" FT /db_xref="InterPro:IPR005717" FT /db_xref="UniProtKB/Swiss-Prot:Q2SSX0" FT /protein_id="ABC01748.1" FT /translation="MRKNRAEKRDVLADPIYNSKLVTRAINKIMLDGKRGIAQSIIYDA FT FNIIKEKTNKEPIEVFNKAIENIKPHLELKVRRIGGANYQVPVEVSAERQITLALRWLI FT NYARLRNEKVMTIKLANEIIDASNNIGGSVKKREDTHKMAEANKAFAHYRW" FT gene 181679..183748 FT /gene="fusA" FT /locus_tag="MCAP_0153" FT CDS 181679..183748 FT /codon_start=1 FT /transl_table=4 FT /gene="fusA" FT /locus_tag="MCAP_0153" FT /product="translation elongation factor G" FT /note="identified by match to protein family HMM PF00009; FT match to protein family HMM PF00679; match to protein FT family HMM PF03144; match to protein family HMM PF03764; FT match to protein family HMM TIGR00231; match to protein FT family HMM TIGR00484" FT /db_xref="GOA:Q2SSW9" FT /db_xref="InterPro:IPR004540" FT /db_xref="UniProtKB/Swiss-Prot:Q2SSW9" FT /protein_id="ABC01383.1" FT /translation="MAREYSLLNTRNIGIMAHIDAGKTTTTERILFHTGKIHKIGETHE FT GASQMDWMAQEQERGITITSAATTAFWKNTRFNIIDTPGHVDFTVEVERSLRVLDGAVA FT VLDGQSGVEPQTETVWRQATNYRVPRIVFVNKMDKTGADFIYSVKTIGDRLGAKAAPIQ FT LPIGAEENFTGIIDLVEMKAYEFDGKPEENYKEIEIPSNLLEQAKELRAHLVEVAVEYD FT EELLMKFLDGGEISISELKSAIRKGVINADFFPVLAGSAFKNKGVKLLLDAVVDYLPSP FT IDIPSIKGILPTGEEVERHASDTEPFSALAFKVMTDPFVGKLTFFRVYSGILTKGSYIL FT NSTKQQKERVGRILQMHANNRTEIEEVYSGDIAAAVGLKNTTTGDTLCDEKHEIILESM FT VFPEPVIQLALEPKTKADQEKMSIALSKLAEEDPTFRTYTDDETGQTIIAGMGELHLDI FT IVDRMKREFNVATNVGAPQVSYRETIKLPGKAEGKYIKQSGGRGSYGHVVIEFEPNKDK FT GFEWVDKITGGRVSKEYINSARVGLENALRNGVIAGYPMIDVKATIVDGSMHEVDSNEM FT AYKIAASMALKEAARKMNPVVLEPIMNVEVTVPDEYYGDVMGNISSKRGMIEGSEQRGN FT AQTIKSKVPLTEMFGYATELRSFTQGRGNYTMIFSHYAEAPKAIADEIIKKSGK" FT gene 183880..185067 FT /gene="tuf" FT /locus_tag="MCAP_0154" FT CDS 183880..185067 FT /codon_start=1 FT /transl_table=4 FT /gene="tuf" FT /locus_tag="MCAP_0154" FT /product="translation elongation factor Tu" FT /note="identified by match to protein family HMM PF00009; FT match to protein family HMM PF03143; match to protein FT family HMM PF03144; match to protein family HMM TIGR00231; FT match to protein family HMM TIGR00485" FT /db_xref="GOA:Q2SSW8" FT /db_xref="InterPro:IPR004160" FT /db_xref="UniProtKB/Swiss-Prot:Q2SSW8" FT /protein_id="ABC01493.1" FT /translation="MAKEQFDRSLPHVNIGTIGHVDHGKTTLTAAITKVLSEQGNAEFK FT DYANIDNAPEERERGITINTAHVEYKTANRHYAHVDCPGHADYVKNMITGAAQMDGAIL FT VVAATDGPMPQTREHILLSRQVGVPKIVVFLNKCDMVEDDEMIDLVEMEIRDLLTEYDF FT DGEGAPVIRGSALGALNGDSKWTGAINELMAAVDEYIPTPQRDADKTFLMPVEDVFTIT FT GRGTVATGRVERGTVKVNEEVEIIGLKEEPTKTVVTGLEMFRKLLDFAVAGDNVGALLR FT GVDRHSVERGQVLAKPGTIKPHTVLKASVYALTQEEGGRHKPFFNKYRPQFYFRTTDVT FT GEVTLPEGTDMVMPGDNVEMEIQLIKPVAVEEGTKFSIREGGRTIGAGTVISIEK" FT gene 185190..187031 FT /locus_tag="MCAP_0155" FT CDS 185190..187031 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0155" FT /product="PTS system, IIBC component, putative" FT /EC_number="2.7.1.69" FT /note="although this probably tranports a hexose, one FT cannot be certain it is glucose; identified by similarity FT to SP:P19642; match to protein family HMM PF00367; match to FT protein family HMM PF02378" FT /db_xref="GOA:Q2SSW7" FT /db_xref="InterPro:IPR018113" FT /db_xref="UniProtKB/TrEMBL:Q2SSW7" FT /protein_id="ABC01472.1" FT /translation="MKKILDFRKAKESNLHEFFSKFAKSILTFVALLPAAGLTIILGKI FT IGPLGLGQIKASAKVFNQIGGVIETVGWAAFSHMGLLFAVAIGGTWSKNRYGGSFAAAF FT AYFILLAVGSSMFITRTDPNTKELQFLNYILGRWEKHELFFSSQEGVMSIRYDAIGGII FT MGFVGATIYNKYYNFNKLPQALSFFNGARFVPFMVIIIVLPISVGIGLIWPLFQTVINY FT LGNFFAKEQKLKFLAPFLYGTSERLLLPFGLHHMITIPMNYSQLGGNVDFTNSSQFTNT FT NEQNAKIIADFFSSLSNKEALKAQGQEKIWLSWITALGNVKSGWTDYAANHSNVSGLSM FT QQAYEIVLDSVVPVRFKVGQMITSSGSLVGAGLGMAFAIPKEKRAKYSSIYFSGLAACL FT LTGVTEPIEFIFMFSAPLLYVLHAVLTGIAFGISDFIPMRIHAFGGIETLVKYLFVFGP FT TSITGIGIKGILWIQGLWLLLVTIGFGGIYFVVFYFFTKKTKPAIPGFTNDELITDVEA FT KQEVKEKTIKTDKTVKAIIDLLGGLDNLEDIDACMTRLRVKVKDKTKVENKFKELTGAV FT GVLNKGSSLQIVYGPKADIYKGEILELLERNKNGKTK" FT gene 187015..189282 FT /locus_tag="MCAP_0156" FT CDS 187015..189282 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0156" FT /product="isoglycosyl hydrolases family 31, putative" FT /EC_number="3.2.1.-" FT /note="identified by similarity to SP:Q9F234; match to FT protein family HMM PF01055" FT /db_xref="GOA:Q2SSW6" FT /db_xref="InterPro:IPR000322" FT /db_xref="UniProtKB/TrEMBL:Q2SSW6" FT /protein_id="ABC01847.1" FT /translation="MAKPNNITREMLEYSFPIKQRIFDPKNEYWITTKVSDLWTTNNNL FT FIEVTFSNLQKATFQIQLFESNIINLKLSQKTIPTLFNEHLNSNLKQKSIKFIKTKDQI FT IIDLDKDEKLVFNINPFVLMILDSKKNIKTRTTLRTGYQFFEGFINPNLGIEIDQNKNQ FT RFFMSFDIENDEKFYGLGEKFRPLVKNGVESVIWNSDNSCVTNNDLAYNGLPLLYSTNK FT WGFLVNTSCKTTFEIGSPTTDILSFKVDQDFLDLYLFSNQSLKELVSSYTLLTNRISKV FT PDIGYGVWLNRLYYHNYEELFEAINKAKELNYPLDVITLDPKWLKNRYTKSCNFEYNTD FT AFGDFKKLFNDVKANGLEMCFWINPYIQNDGLENSKFLFENDLLVKSKNGGYAHPWTGT FT ETYQENNYIIDFTNPKAYKWYKDQIKKLFNLGLRFVKPDYGDGLPEDAILFNNYQAKDF FT KQYFMFLYVKCCYEAGEEFFGAGKNVVVSRPGYIGTQKFVGKWSGDSITSFSDLKNHLQ FT AGLSLSLAGEVIWGTDIGGFVESKDFSLDLYNRWTQVGMLNTFSRYHALGQREPWRFDK FT NTLDNSIKWARFKKTLLPEFKVWEQESIKKGLPILRPMVLENENNKIARLIDDQYYIGQ FT NILICPILKQNSTNRDVFLPDGSWYKLDDKTKIYQGNCLYNFDVAWDDILIFVKNNSAI FT LRFDNGSYNFKNVKDQIIEVDIYGQVDNLEYQFEIGDVLNKISIVNNQIHSNSNHKFIV FT KK" FT gene 189469..190824 FT /gene="pepA1" FT /locus_tag="MCAP_0157" FT CDS 189469..190824 FT /codon_start=1 FT /transl_table=4 FT /gene="pepA1" FT /locus_tag="MCAP_0157" FT /product="cytosol aminopeptidase" FT /EC_number="3.4.11.1" FT /note="MCAP_0195 pepA2 is a paralog of MCAP_0157; FT identified by match to protein family HMM PF00883" FT /db_xref="GOA:Q2SSW5" FT /db_xref="InterPro:IPR011356" FT /db_xref="UniProtKB/TrEMBL:Q2SSW5" FT /protein_id="ABC01289.1" FT /translation="MIKFNDKKEELTLVCLTEVNNKPYVSDADLSTTFISEDKTIYMVI FT KKDHKCLKTKIRNAFKKFVLTNKFNLNVDVDSFLVLFDMCGCKKDAIEAIYETIAFETF FT DKVSYKKDSKPNEVVYNLITNEDVKELEEKEAIKMEFVNFARTLQDTPPNIATSEYLAE FT KVVEKAKEIDGLKVTVLGKKEATKLGMNLFLAVNAGSIYEPQAVVLEYVGDENEPKKAL FT VGKGITFDSGGYNLKPSSAMEGMKFDMSGAAIMLSTVMALAKMKAKVNVVGIGMFTDNR FT IGSTATLPQSVIKSMNGLTVEIDNTDAEGRLVLADGITYVIREKQATEIWEASTLTGAM FT VIALGSYATGVFTNCDKRWELISQTSHKTSERVWRMPIFDEHLEKVKADSVNADLTNAA FT KGREAGSSTAAAFLSAFAEEKPFVHFDIAGTADKAGRGQAVLVRTLFEIFNK" FT gene complement(191048..192213) FT /pseudo FT /locus_tag="MCAP_0158" FT /note="This ORF encodes tandem sequences containing the FT lppQ-Variable-Repeat-Peptide motif. This disrupted ORF FT spans a region similar to that in M. mycoides SC encoding FT ORF MSC_177, an annotated lipoprotein that contains FT multiple tandem QVRP motifs.; lipoprotein, putative, FT degenerate; this region contains one or more premature FT stops and/or frameshifts which are not the result of FT sequencing error" FT gene complement(192390..195080) FT /gene="alaS" FT /locus_tag="MCAP_0159" FT CDS complement(192390..195080) FT /codon_start=1 FT /transl_table=4 FT /gene="alaS" FT /locus_tag="MCAP_0159" FT /product="alanyl-tRNA synthetase" FT /EC_number="6.1.1.7" FT /note="identified by similarity to SP:O34526; match to FT protein family HMM PF01411; match to protein family HMM FT PF07973; match to protein family HMM TIGR00344" FT /db_xref="GOA:Q2SSW4" FT /db_xref="InterPro:IPR012947" FT /db_xref="UniProtKB/Swiss-Prot:Q2SSW4" FT /protein_id="ABC01717.1" FT /translation="MKKLSTNQIRKIWLDFFISKNHYFLEPVSLIPVDDPSLLWINSGV FT ATLKPYFDGRKTPPSPRLTNSQKAIRTNDIENVGVTARHHTMFEMLGNFSIGDYFKKEA FT IELAWELLTDKNYFDIDKNKLYITVFNEDIEAYNIWKDVIKIDEDHIFRLSKKTNFWDV FT GQGPCGPNTEIFYDRGEIWDPNKIGPRLISDDIENDRYIEVWNIVFSQFNNDGNNNYVE FT LPRKNIDTGAGLERFASIFQNTPTNFETDIFYPTIKKVEQLTNNQFKYSIDNYFNPNKK FT QTRINTAFKVIADHIRATVFAISDGVFPGNKDRGYIIRRLIRRSCVFGNELGIKQAFLY FT KLVDSVIESMKEFYPYLVDKKSLVEQTIKDEEEKFLKTLSKGYDLLENIIKTKNTVSDK FT DALLLFESYGFPIEQTIEISELSNVTVDIEGFKKLLEQTKQATRNARKDLKAWDKQNEL FT FTKLKVESEFTGWSEISRDNAKVIYMFTDQKQVESITDQEVFVILDKTPFYAEKGGQAA FT DSGIIFNDQMKGFVIDVQQGPMHQNIHRIKVQDTLKLNDLINCRVDEEKRIYTMKNHSG FT THMIHYALREVLGSSVMQSGSYNDENGLRMDFTYHRLPTNQELLKAQNLVLEKIKNKVD FT RQTYFCSLEESVKKHQALAFFTEKYDEIVRVIKFGDFSSELCGGTHVNNTSEIEDFIIT FT GIESKGSGLYRIKCLTSFKTVNEYLNEQFKIYKDQAEIIIDKYNQNKDLLKNDQLENIY FT LEIKNITINKDNLILIKDLLDKLRDLNKDYDKKVNDLITANKLLKYKDLTPSLNKDNVN FT EIKLETTDLNIRDLKQLADDLRNKYNDLIVILLSSTNENNFIVVAVSQSLQNKYKAIDI FT FNNLEGYETKGGGNANLAQGKFVKK" FT gene complement(195149..195643) FT /locus_tag="MCAP_0160" FT CDS complement(195149..195643) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0160" FT /product="membrane protein, putative" FT /note="MCAP_0160 has 3 membrane spanning regions" FT /db_xref="UniProtKB/TrEMBL:Q2SSW3" FT /protein_id="ABC01628.1" FT /translation="MQKSKVFKELKEIDKYAKEQHKKQVNQTIENIYDSSEFKMNFYEY FT QQVKKLRWIGWLIVFLIFIIGSLIGVLVGYLTLNISHLSNWKGINYFNVLYTTILFFIG FT FIIGFIKNRQATKFFNDRRRRYQKTLELKEAKLIRLKKIFYLSGFLMLVLTIILFLVFK FT I" FT gene 195862..197106 FT /locus_tag="MCAP_0161" FT CDS 195862..197106 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0161" FT /product="oligopeptide ABC transporter, permease protein, FT putative" FT /note="identified by similarity to SP:P24138; match to FT protein family HMM PF00528" FT /db_xref="GOA:Q2SSW2" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q2SSW2" FT /protein_id="ABC01160.1" FT /translation="MKSTSKNKQEALNLNTQLLLDDFSLLNETNQQHKVSKWTTFKYWY FT YDTSANIYKYFVRHPLYGYSFKRILYGLITLLLSIVILYVVIRLITPNEKYLPPDIEKT FT GLSRAQQDKLLEDRMKRFGVYGPLIPQILTYLKNITPFIPKQIVLGSEVIISQNGQEIV FT VSSKLITETRYVYLGVTTATTVAEEGSDALSIFLKAMPYSFAIGSVSVLISYALAILIG FT VRAAKKKGKLFDNVFNGISALVLAIPSIVIIIGTFIFSVAVLGNSGIYNTGSFATRFWP FT IFAIVVINLPGIATFVRRYIVDEMTVDYAKFALAKGTSSNKTYYVHIFRNAGVRIIRSI FT PSEIILTVFGSSMIVETQWAIPGMGRLIKESAGGNDFFVFLGFTVLSSFVSIFAKLLAD FT LVHVLLDPRVSLTKD" FT gene 197122..198132 FT /locus_tag="MCAP_0162" FT CDS 197122..198132 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0162" FT /product="oligopeptide ABC transporter, permease protein, FT putative" FT /note="identified by similarity to SP:P24139; match to FT protein family HMM PF00528" FT /db_xref="GOA:Q2SSW1" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q2SSW1" FT /protein_id="ABC01830.1" FT /translation="MKTKQVEQPDFSLLLDKEREAFFKRHGLDIFQIDHSLFELVGSQA FT KTSETIITKPYSYWKAVGRILVTSKVFIVCSIILFALLLTSIIVPWGKEAIPLKTPGTS FT QEHPSMKYWFGLGRNGEDYWIEIWLGLRSSLSFAFVMTFLQLSIGIIMGLIWGYYRKLD FT ILFYQLTSLILVIPQLILIIVIMSVFGIGYWPMILGIVIQAWIGPAFSIRILVLSIRDA FT DYNIASITLGTRSDKIIRKNVLPKILPVLIQVSTFSIPTAIAIESTLAYFDRGFVDGKK FT NTSLGKILQSIMQSSEWQVYPHLIILPILFICIISTLFFLVLKVFADSLDPKNHR" FT gene 198146..199846 FT /locus_tag="MCAP_0163" FT CDS 198146..199846 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0163" FT /product="oligopeptide ABC transporter, ATP-binding FT protein" FT /note="identified by similarity to SP:P24136; match to FT protein family HMM PF00005; match to protein family HMM FT TIGR01727" FT /db_xref="GOA:Q2SSW0" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q2SSW0" FT /protein_id="ABC01545.1" FT /translation="MKNIILSIKDLVVKFRVRSKVLTSIRNISFDIYDGETVAIVGESG FT SGKSVLTKTLTNMLESNGYIANGSIMYYPSKATKENESAVFKKDLDLVEFHKNSLESES FT RKGIKKYNNKKIKDALLTIKELKESTIESLNLKIDELQQKADLLKKYEFTNSTKKLVKR FT NEYLEQIKQLKEQIEWKKDPKKLEFEIQQLEKIIQTAKKEIYNFRTISAFKKFKYFQIV FT SLINKFNKNELEDINKLEPHIKWLDEIEYKNNFESLALEIFYDIRSNQTKKLDQTKVEA FT LNEMWNFVRRFNFWIKRSTNKNLQHLRGGTIATIFQDPMTSLNPLLSVGYQISEVLRNH FT SKLNRAEAKIEAINLMKRVGIPNAEKRYKDLPGKYSGGMRQRVVIAIALACRPKVLICD FT EPTTALDVTIQAQILDLIKELKEEYKFTVIFITHDLGVVANIADRVAVMYAGQIIEYGT FT TEDVFFNSKHPYTWALLSSLPQLGTKGEELYSISGTPPSLFKEIKADAFAPRNTFALAV FT DYKYEPPMFKISDTHYAKTWLLDPRAPKIKRPKQLNNLKKAVSESKVGE" FT gene 199848..201725 FT /locus_tag="MCAP_0164" FT CDS 199848..201725 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0164" FT /product="oligopeptide ABC transporter, ATP-binding FT protein" FT /note="identified by similarity to SP:P24137; match to FT protein family HMM PF00005" FT /db_xref="GOA:Q2SSV9" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q2SSV9" FT /protein_id="ABC01396.1" FT /translation="MIKKKNEAILKVRDLLIEFGNGRNKLKAVKGVTFDVYKGETFGLV FT GESGSGKTTIGRAIIGIQPVSDGAIYFENKLLRGKSPDVYKINQKIARHLYIMQQNHLT FT TSLILNDYSNEFKRVYYKYTQSKFFDFKTQELKDYEDGKSRIIKEGVNLNTTKLVSVKK FT NANLSIVIQAVTDNLKRLLKIIRLQEKAARITKNISKHANIKVELQDAINKYQDFVHDS FT ILKIKELENTIYNTLQEMLSIRNDVNNGKYTSVTKFFDEMGAKLKLVIKSQKLITPKLE FT DASHDQLMNLALTCPKYKNSYYLKKLKQRIDYLTINNKTELAEEYQSVIETVQNSDFYD FT NLKTAEIFKSPNRKELKENKKNMQMIFQDPSSSLNERMAVEEIIKEGLDNFPELYLDDE FT VKMAYQKWFNKNNKENPIADISEIDKKDIKRFLINQLLETVGLLPEHLSRYPHEFSGGQ FT RQRIGIARALIMKPKFVVADEPISALDVSIRAQIMNLLAKFQKQFDLTYIFIAHDLSVV FT RFATDRIAVIYRGDIVELAESNELFDLPLHPYTRSLLSAIPLPDPVQESKKVHFVYKPE FT VEHYDYLVDFPKWVEVSKGHFVYANEREVKAYKKQIKNYKDQLKLKAKM" FT gene 201742..204849 FT /locus_tag="MCAP_0165" FT CDS 201742..204849 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0165" FT /product="oligopeptide ABC transporter, FT oligopeptide-binding protein, putative" FT /note="This is part of a ABC transporter cassette for FT oligopeptides. It is a hit for the characterized FT Streptococcus pyogenes OppF; identified by similarity to FT SP:P35592; match to protein family HMM PF00496" FT /db_xref="GOA:Q2SSV8" FT /db_xref="InterPro:IPR000914" FT /db_xref="UniProtKB/TrEMBL:Q2SSV8" FT /protein_id="ABC01259.1" FT /translation="MKKVLGMTLLGSIIATASASIVSCSVGIGLDKILNRRNSNTKILR FT ELTNYSLANLNSATNNIANDADIIANLQDILLTVNRHDHYEGALAEYWDHNKDKDHWKF FT RIRKNAYWTRIENGKQVKGPQITGLDVFNTFRYVLNKNNLALTTEHFLTNFKHVHELME FT FIDKLSDPNNKELYDARFNKDLPGDLRTNELKSSYWIDRAILAFNITPEDSKKAKELAL FT DTSMSTKELLKKSFKEGKIVNDGKSNGQNDKSEDGLDQNIFDVGFYLSKRISYFESVIS FT YLAFAPIPEIALQYASDKDQKSSIYAGTAYGKPLGKKSGYNGLWYSGAYVIEDYFPGSN FT LNLTKNEFYYNKDKVYIEKINYSYVNKADAATRRFLFETGDVSSTKINANDLAGWKKYV FT GSEDNPVFEGTNILKQKPTTTWAFGFNFHTKGTQIYDRIELDHQGNLKENSKKRPRTAQ FT EDSILNRALALKSLRIMARYVLNRSLYAKFHSEARDGNDRPTSTQLRNTFTSQYISTYN FT DDQHRVVDKDSGQKVADYADFLAKDYYDIRKYDDDNNPKSINGSSTSTHSRTTRSTESN FT SSTSTSQADEKSWSDWIIEVLKAKSWYKEDNIKKWANRFGKVRDAKNPNSKKKVSVYNE FT GNDAYLENDLLAFTAFLKEDQLQPISGNGKNGLFDLKRDANSVTFKNERLAKEFAELIG FT VYDTGIDSKKDIKKQDHLLKNLYKKINLLKQQVKEDLEKIAGIKDLRKPITIPFLLNPT FT GADDFKIKIAQFFGSFNYLVRKFGNNDIDSPFVFDIDKPIDFSNYLKDIRAGKYGLAAF FT GWAPDYDDPTNYLATLKYGGVYEHIQSWTKVFDKSNLESTNTSSTNGEHRKDIKLDLKV FT KDTSVDENTLKTAYEDLKNIIQHFTNELTYIDENKTEIYERYTELAKLENFYTLASAII FT IPTHTHQADTLPSISYVDEFSKSTWPSSGAHAKRYVGVRMFDKIVTRKQYEEQKAEYEK FT EKHNGYKPLNPIKFDEKTGKNVYFDNFKGKWREQWKEQYKKENKIK" FT gene 204948..205049 FT /locus_tag="MCAP_0166" FT CDS 204948..205049 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0166" FT /product="truncated membrane protein" FT /note="A large integrated element (designated Tra island FT II) is integrated into MCAP_0166; As a consequence of this FT event MCAP_0166 represents the N-terminal portion of a FT larger ORF. The C-terminal portion is represented in FT MCAP_0188. The last 9 amino acids of MCAP_0166 are derived FT by read through into the element. Nondisrupted orthologs of FT MCAP_0188/0166 have been sequenced for 3 additional M. FT capricolum subsp. capricolum isolates. 205021 is first nt FT of TraI2 element. MCAP_0166 contains 1 membrane spanning FT region, N-terminal. The C-terminal portion of the disrupted FT ORF (MCAP_0188) contains 2 membrane spanning regions and FT encodes tandem sequences containing the FT lppQ-Variable-Repeat-Peptide motif." FT /db_xref="UniProtKB/TrEMBL:Q2SSV7" FT /protein_id="ABC01756.1" FT /translation="MKKLIKVIAFGLILTSLSVSLLNIMNRYPKKIQ" FT misc_feature 205021..227425 FT /note="Tra island II element" FT gene 205361..206965 FT /locus_tag="MCAP_0167" FT CDS 205361..206965 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0167" FT /product="hypothetical protein" FT /note="First ORF in integrated element (designated Tra FT island II). This island spans nucleotides 205021-227425 and FT encodes ORFs MCAP_0167-MCAP_0187. Weak homology to DnaC FT helicases; identified by Glimmer2; putative" FT /db_xref="UniProtKB/TrEMBL:Q2SSV6" FT /protein_id="ABC01851.1" FT /translation="MIKKLNVNNNEQEILFNNLKSNSTSCYIFGLPGVGKTYFVNNLVN FT QMKLEFNNNNNKDFWKKTESLDVEFINLAELVEKIKNSWNSKFTDSKEVLQNQIRRLIN FT CKVLVIDDLGVETLSQGVYPYIFELFDKRYDLFTKKELITIITSNYSPENLKKYYNKKL FT DVVNVERLISRVFGLFNYNFINFIGTDKRNKTLTQPINQTIKSNINIDNINNKNKTTNS FT YINYGVMKNDFFSNILKSLKNDKSPYKNEKMWILNLQNQQYKDGDFLVKGLIIPRSSMV FT ETKTGTGYHISNPDNTKTVYVLHNWIYDKDSTKDFVLVAIPEKVNNNNFKTYLRTKGKG FT KCKFSDAKKTFLHLLDAAACWFKQFKEKLENMSSGFDWIFEKTNNLTNKFKQQLFNNSS FT NFVLNTVGYNQNIEVKPQVEPDKKVIKYEYLSKEIENVSNTSEKIINDKTLTQIKDIKK FT SISDDDNLIIKTYHKNDIVDLNDEILLKAIQQFFEIPSNSLETTKILVEDTLDLLELEV FT KIKDIAEFLPSSVKLID" FT gene 207895..209073 FT /locus_tag="MCAP_0168" FT CDS 207895..209073 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0168" FT /product="membrane protein, putative" FT /note="MCAP_0168, encoded within Tra island II, has 1 FT membrane spanning region" FT /db_xref="UniProtKB/TrEMBL:Q2SSV5" FT /protein_id="ABC01710.1" FT /translation="MLLLTKFFNLLFFIIPFSTNQTFNYQFVNNQQVNIKSNVKNQLVT FT KEPQLTYFEFNKQSPIELNSFNQDPYDIQLKNNDKQSKFGIITKTAILSLNSYLEKSIK FT IPKDASYIKLSETDFAFTSKWISYNKKTDLSVGLYLWRYPNLTKSIEYQLTYITNNRKL FT FNSSFINLDFISNQNYKNSNTIRDFKQTYQFKHLKEYTDSKNINIIADYDYTKIVDYWN FT LYSKSQFKPSKSYIDLNQFTFNLTTYLTSNKSHLKKLIDKDIKTKLKTKISINFDNTND FT YQIEILDNSSLSYKLNDNSFNKLKFSTKSGFTGQLIIKSHPNSNILIGSTKFDIKILSN FT SISTNLSKWLIGLTITSLVLLILISFIIFSKNKILRKTFKQQKGFNYEYKNK" FT gene 209054..209689 FT /locus_tag="MCAP_0169" FT CDS 209054..209689 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0169" FT /product="conserved hypothetical protein" FT /note="MCAP_0275, MCAP_0314 and MCAP_0169 form a highly FT paralagous family (>92% amino acid sequence identity)of FT hypothetical proteins of unknown function. MCAP_0275 and FT MCAP_0314 are encoded in Tra island I. MCAP_0169 is encoded FT in Tra island II" FT /db_xref="UniProtKB/TrEMBL:Q2SSV4" FT /protein_id="ABC01804.1" FT /translation="MNTKTNKKTNYKTEKIECLEKPIKRIFISGSADKYDGFKNENDAK FT LFLHTLAYKLAENNYHIVNGNGKGVGDFLLSGVTEYCLKNNKQISDYLTIISFPQNNIS FT KVNIKELYMKNREQMVEKCDTAVFVFGNKNNNIAEGMMQEYDLTKQKGLSLLPIKFTGG FT SSEKIFELEYPDNTEIVKKAFSLINDNSTDDVNKLVENILEAIKLLQI" FT gene 209791..210543 FT /locus_tag="MCAP_0170" FT CDS 209791..210543 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0170" FT /product="conserved hypothetical protein" FT /note="This ORF, resident within Tra island II, encodes FT tandem sequences containing the FT lppQ-Variable-Repeat-Peptide motif; identified by match to FT protein family HMM PF03382; match to protein family HMM FT TIGR02167" FT /db_xref="InterPro:IPR011889" FT /db_xref="UniProtKB/TrEMBL:Q2SSV3" FT /protein_id="ABC01500.1" FT /translation="MSENIKQAIYNFDETECLQIGYFTNEAGEIQIQHMPITIKKVPKD FT LPKEITSLSFAFKGNKNEFVDGIQYWDTSNITNMSWTFNNATKFNQDISMWNTSNVKFM FT SFMFYGAENFNQDISMWNTSNATNMSNMFFNAKNFNQPIGNWDTSNVTNMAGMFSSAYS FT FNQDISMWHVSNVTDMSYMFYGAENFNQDISMWNTSKVKYMSFMFYNATSFNQDLSKWD FT TSNVNAFGQNIGASNPNWKPEHQPQFNK" FT gene 210593..211243 FT /locus_tag="MCAP_0171" FT CDS 210593..211243 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0171" FT /product="membrane protein, putative" FT /note="MCAP_0171, encoded within Tra island II, has 4 FT membrane spanning regions" FT /db_xref="UniProtKB/TrEMBL:Q2SSV2" FT /protein_id="ABC01665.1" FT /translation="MNINNIQLNFNAVGGSINDLKTPLKLADVFNKQMQTILNIVYPTI FT AGILFLAIIIPTLYFYIGRIFNPKIQKSVLLQNWTHLAGSILLLVIVYAVLTSINKLLI FT EPQTLKLKEQIEDNTIEPGTQFTSAIQLFTFVIANIALTIIIGVAQLSILITYIIWLVK FT KSSGKDTDLANFSKALFIMIGVLVLMIFVYVVANIAFNQYLVSIFQKLAEAES" FT gene 211364..212194 FT /locus_tag="MCAP_0172" FT CDS 211364..212194 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0172" FT /product="lipoprotein, putative" FT /db_xref="UniProtKB/TrEMBL:Q2SSV1" FT /protein_id="ABC01457.1" FT /translation="MKKLLILLSTITLSVPLTTLIISCNVWKPTSWSSPNHKELSGDEL FT KTSIVTIWNNYYKNKINLNKTYETIIKSFQLFLESLEFDLKIILNDLTQSKNLFRFANE FT QLKLKVDVNSKKDLFSLELELGKPKYEKISINVKNNLSLESIQKYLKDTFGYTDQNINE FT VDIKLEQLTIIGKYSNNKQKLHKFNLKNPLDLKENKFDEKLVNIAAEYAKEHLKEYTYK FT SFDLVECLISLTSNSINSPIQLNHLATIKLNPIVIEPKHISPPISETQHDTFMQ" FT gene 212404..212691 FT /locus_tag="MCAP_0173" FT CDS 212404..212691 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0173" FT /product="hypothetical protein" FT /note="This ORF encodes tandem sequences containing the FT lppQ-Variable-Repeat-Peptide motif. The reading frame is FT open for 87 codons 5' to the Met codon and overlaps FT upstream MCAP_0172. MCAP_0172 and MCAP_0173 may constitute FT a single gene with a frameshift mutation; identified by FT Glimmer2; putative" FT /db_xref="InterPro:IPR011889" FT /db_xref="UniProtKB/TrEMBL:Q2SSV0" FT /protein_id="ABC01462.1" FT /translation="MFKGAKTFSQPLNNWNTSNVTNMEYMFYGAKNFNQPIGNWNTSNV FT TNMEHMFDDAVSFNQDLSKWNTSKVINKHNQNIGFVNPNWKPKHQPQFNK" FT gene complement(213489..213747) FT /pseudo FT /locus_tag="MCAP_0174" FT /note="This ORF encodes tandem sequences containing the FT lppQ-Variable-Repeat-Peptide motif. Contains frameshift at FT approximately 213445 based on sequence of equivalent ORF FT from M. capricolum subsp. capricolum strain GM262G. In the FT absence of the frameshift, ORF terminates at nucleotide FT 213716.; conserved hypothetical protein, authentic FT frameshift; this gene contains a frame shift which is not FT the result of sequencing error; identified by match to FT protein family HMM PF03382; match to protein family HMM FT TIGR02167" FT gene 213766..214179 FT /locus_tag="MCAP_0175" FT CDS 213766..214179 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0175" FT /product="conserved hypothetical protein" FT /note="MCAP_0175, resident within Tra Island II, exhibits FT high amino acid sequence identity to Tra Island I encoded FT MCAP_0295 (88% amino acid identity)." FT /db_xref="UniProtKB/TrEMBL:Q2SSU9" FT /protein_id="ABC01227.1" FT /translation="MKEIKTILSYPQIIQKKLEDDKYDLFDSIIQELRDKDIIEENLEQ FT IYRFKHVSDFSSTKLLDFLKNHNLGDFEDWIYIDKKENKLKVYEKAYAESIILADVLVE FT LANHMADKKDEILDFDHKEITLDKVDKKLLELE" FT gene complement(214289..214405) FT /locus_tag="MCAP_0176" FT CDS complement(214289..214405) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0176" FT /product="hypothetical protein" FT /note="identified by Glimmer2; putative" FT /db_xref="UniProtKB/TrEMBL:Q2SSU8" FT /protein_id="ABC01387.1" FT /translation="MVMKQHTPVKIKKTKDSLKIEIVPKTIVKSSKIKNNQL" FT gene 214527..214916 FT /locus_tag="MCAP_0177" FT CDS 214527..214916 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0177" FT /product="conserved hypothetical protein" FT /note="This ORF, resident within Tra Island II, encodes FT tandem sequences containing the FT lppQ-Variable-Repeat-Peptide motif; identified by match to FT protein family HMM TIGR02167" FT /db_xref="InterPro:IPR011889" FT /db_xref="UniProtKB/TrEMBL:Q2SSU7" FT /protein_id="ABC01191.1" FT /translation="MKVLLIEHISNLSKDLILDKNQLITKINDEIQIKQFLQTTKKVPS FT VLPKEITNLKTAFKDNENEFIEGIQDWDTSNVKNMRYMFKGATSFDQPIGNWDTSNVTD FT MSAMFYGAKSFNQDLSNWNTSNVWK" FT gene 215059..216234 FT /locus_tag="MCAP_0178" FT CDS 215059..216234 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0178" FT /product="membrane protein, putative" FT /note="MCAP_0178, encoded within Tra Island II, has 6 FT membrane spanning regions" FT /db_xref="UniProtKB/TrEMBL:Q2SSU6" FT /protein_id="ABC01875.1" FT /translation="MLIDIKSAISDGFWWLFIGSILHIFNGIEKVLNFLIFDLGALLLF FT GKSGFRELNWNTIPVPKEFLYFLGFAAIVGLAVFFIQLIKGYFKGGESLKTNFINSIKG FT FWKATFALLVIPLLLVGITFLFRGVGYLINLIFKNNQETSLTGQLYYFGFRNSYLKSIF FT LKQFNENSFSAPYHWLYGGDWSPTISIIATWACVFSLYKIISNMGVKLEKMFALALISP FT IPAIMQIRDNGEKLANWKNEFEKIVFGVIGGYFSYFLFERLLEYIMKIENVLAYSGNLN FT STLILILQLGLILGLTRLIFSFSNYIRDLFTFNATLSSEISDGHSNTSNPIAKVLSYTP FT IGLAASIIKNTFNAKYNRRATAKVNEKTKIRMQKKRINQNKKKWEKTWKTH" FT gene 216319..219186 FT /locus_tag="MCAP_0179" FT CDS 216319..219186 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0179" FT /product="membrane bound ATPase, putative" FT /note="MCAP_0179, encoded within Tra Island II, has FT homology to TraE/TrsE orthologs encoded within mobile DNAs. FT Contains two membrane spanning regions" FT /db_xref="UniProtKB/TrEMBL:Q2SSU5" FT /protein_id="ABC01478.1" FT /translation="MKQPLITKAFGQAKFKIYGFNIIDLGYMFLAVILSLIVGVSVSNN FT VFIKIVAMLGILIVFAIGLIPTPIGMIWKILPSVILKFISKNIYESKEEIANELPIKKI FT EVDFLISKQNTKNVAFEVNGIDLSILEDKDVELKIKLYEQFLKSLDVEVYQIKIDKQLQ FT LDKYEQWLTQHQQGTKNAEKIKQLDDYINQIKEKELEYNSKFYLVFSSKDNQSLQNAIK FT NLKIFFSKIELTYKQLENFEFINLLKDMYFDFDKDDFTQQDIKEHIDNIDYLLSYDNLK FT IKNNYMIFANNEYETYISCKTLKEYASSPDISWFFDISTERGTVVSRISPLKQQQINRM FT VNNANIKARVNQKLNKQVKLTDVITEEANIDSIQELAANLKLGNEKLFLISTTFISFGD FT SLSDLKENENNIKLELSNNDFVLSNQSFKQFETFINSFPLGLASNKNIVLKQEISSWAL FT ANSFPFVDNNWTDISGIYFGDTLNYSPFIIDFFKRKSNVLNCNATVIGASGSGKSVTMK FT KLVNFNCVAGIKTIIFDPERTEFLPLIKKWNGQIINVALGNKTKINPLEIFKNVENDNL FT NINSIISNHLQVLEEWFSNLFSNLEEIVLEAFLISIQNCYKNSKFYNKPIKDWTSQDFP FT TFDDLKPYVLDEVSKAQSRLIRLEYIINNFVGNGKYANLWNGYTNIDLTNDLILFDFAD FT FGSGGQNTRIKAAQLSLLVKIVDNIIWNNDLTIRQPIQIIVDEAHTFISSDNTYALNMM FT STFARRIRKRNGSFILATQNISDFVKPGAIKDARDIINNTQFSFIGKLMPQDLKDLDTL FT YSKFNGFTENEMTNIRTQEVGNFLFINGGIEKIFFKTNISDLEKQNIGIKKQLEQEAKQ FT LNLGALFNKDEKSIFEAFKNLNRNVNLEQNDVDINVHQNTATITVKSKNDKYQGQVTVN FT FTVKEKLQNIANISDLEQQNIEIKV" FT gene 219507..219827 FT /locus_tag="MCAP_0180" FT CDS 219507..219827 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0180" FT /product="conserved hypothetical protein" FT /db_xref="GOA:Q2SSU4" FT /db_xref="InterPro:IPR012327" FT /db_xref="UniProtKB/TrEMBL:Q2SSU4" FT /protein_id="ABC01592.1" FT /translation="MISKQNLKKVSPVISYYGSKFRLLDKIFSLLELQENDILLDLFGG FT SGIVGVNAKEIFNCKVIINDYDNVLPLNLTYALKNILSFEGNLKNYTKKSSDVLEKLVI FT TL" FT gene 219869..220444 FT /locus_tag="MCAP_0181" FT CDS 219869..220444 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0181" FT /product="hypothetical protein" FT /note="MCAP_0181, encoded by Tra Island II, exhibits weak FT homology to ICEF ORF11, an ORF of unknown function encoded FT by an Integrative Conjugal Element of Mycoplasma FT fermentans. Tra Island I encoded ORFs MCAP_0278 and FT MCAP_0279 also exhibit similar low homology to ICEF ORF11; FT identified by Glimmer2; putative" FT /db_xref="UniProtKB/TrEMBL:Q2SSU3" FT /protein_id="ABC01263.1" FT /translation="MKFIEDKDLWWITQYAENVSDEGVYEVINWKIKNSDEEDRQAIVE FT QILNLVENMSNLDDEINKKIYNKLMSDNLFSLSKLEDINEFFDKLDYEEVDEVANYFSL FT DNFDEFLEEEEIISDSSLEELIDTSLKENGLDSYYINLVEPWRNSTAEYVVINDYVNGF FT SDKYSDDEVKKAHKNHIIKQFIDELKLG" FT gene 220472..221119 FT /locus_tag="MCAP_0182" FT CDS 220472..221119 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0182" FT /product="adenine-specific DNA methylase, putative" FT /EC_number="2.1.1.72" FT /note="MCAP_0182, encoded within Tra Island II, is >93% FT identical to MCAP_0297 encoded within Tra Island I; FT identified by match to protein family HMM PF02086" FT /db_xref="GOA:Q2SSU2" FT /db_xref="InterPro:IPR012327" FT /db_xref="UniProtKB/TrEMBL:Q2SSU2" FT /protein_id="ABC01106.1" FT /translation="MKKIKPIISYYGSKYRMLDKIFNLLELKSSDIFLDLFGGSGIVGV FT NAKHLFNCQTIINDYDNVLPLYLTYALKNILSFEGNLKNYTKKRLDYFIKRLDNGWVDK FT LNQYNKILQTINITHFDYKQLLENIINNKNKVTKLYADPPYFNKTGMYKNSFTIQDHID FT LYNLLSELKIQTKIVISYNDEPFIKELYKDWNIIEINKTNVCGINKNSSKVK" FT gene 221144..221575 FT /locus_tag="MCAP_0183" FT CDS 221144..221575 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0183" FT /product="conserved hypothetical protein" FT /note="MCAP_0183, encoded within Tra Island II, has 90% FT amino acid sequence identity to MCAP_0298 encoded within FT Tra Island I." FT /db_xref="UniProtKB/TrEMBL:Q2SSU1" FT /protein_id="ABC01200.1" FT /translation="MNINKFTVDELKKVLSKDTSLDDNLVKKICVKLNNRLFKSDINQH FT LEIIKLIKYILYKSRSFDENICDFLLDKIIFSSYKFELEKLIKIKKCICLLKKIANNKD FT LNQFAINNNLFTYEQYLKENETELLRKWKEEFLIEYINS" FT gene 221642..222379 FT /locus_tag="MCAP_0184" FT CDS 221642..222379 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0184" FT /product="hypothetical protein" FT /note="Homology in amino-terminus to ParA family of DNA FT partitioning proteins. Paralog encoded by MCAP_0282 is FT resident within Tra Island I; identified by Glimmer2; FT putative" FT /db_xref="GOA:Q2SSU0" FT /db_xref="InterPro:IPR002586" FT /db_xref="UniProtKB/TrEMBL:Q2SSU0" FT /protein_id="ABC01639.1" FT /translation="MKKYKKILIHNNKGGVGKTLITSNLAVYLASQGKKVLLIDFDRQR FT SLTNFFTNSKQEESFKIFNKNETVDIIPTNVENIWIIPGDSKVEPLLPFMTMDASFRKF FT ENQYFDDFDYIFFDLHSALTNSTTLSYKNADSVIFITDTSLNSASILTEFVEDWHSTLS FT ESGLDNNIKAVILNRFQPTKQPLETLELLKRKVPQYLLKTVIPNQANISKSILPEQKWM FT FESPTTKQLFIDLVSELKERKAL" FT gene 222379..222585 FT /locus_tag="MCAP_0185" FT CDS 222379..222585 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0185" FT /product="hypothetical protein" FT /note="Hypothetical protein encoded by Tra Island II. FT Paralogous MCAP_0283(45% amino acid sequence identity) FT encoded within Tra Island I; identified by Glimmer2; FT putative" FT /db_xref="UniProtKB/TrEMBL:Q2SST9" FT /protein_id="ABC01731.1" FT /translation="MSKNLFSEQYSNHCLSYKQSSTRRVCITIPKKVVDLEIQYEKRFG FT MKPNRSQMYANFLKQLLENVPGD" FT gene 222935..225676 FT /locus_tag="MCAP_0186" FT CDS 222935..225676 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0186" FT /product="membrane protein, putative" FT /note="MCAP_0186, resident in Tra Island II, encodes tandem FT sequences containing the lppQ-Variable-Repeat-Peptide FT motif. MCAP_0186 has two membrane spanning regions; FT identified by match to protein family HMM PF03382; match to FT protein family HMM TIGR02167" FT /db_xref="InterPro:IPR011889" FT /db_xref="UniProtKB/TrEMBL:Q2SST8" FT /protein_id="ABC01447.1" FT /translation="MNKKSKTNQEIENNSKINQKSKSTPNKKLNKKAISYIMLASLWAG FT SGFGWFLYYYNHQKSVPVLRKGYEEQYYKELEKWLTPQQRKQREEFLKQAKEYEKQLKL FT EKEKRLEYASRHLVKFINDFDLGAINDNKDETIISILENKFEQVKGQIRVDETFKTKEY FT ARIIPIKNSKYHGEVTVTFTVKTKLDTVITNKHLDKFNNPDEQQIINKVNELNPDLNLT FT ENDITVEIKTNENKAIIKAKDSSSKYQGQVEVTFNIRPTIASTIKTTSLGALLDKDNQS FT ILNAINKANGIELTLDQVDIIDVTPTSAIVKAKENNNYQGEVTVTFTVKKQLEQEAKVV FT NLGALFNKDDNSIFETFKKLNGNVNLNQDDVTIGERRNGSATITVKTTNNDYQGKVEVT FT FTIKTKLNTVIKTTYLEKFDNPNEQQIITKVNELNPDLNLTENDITVEIKTNENKAIIK FT AKDSSSKYQGQVEVTFNIRHTIASTIKTTSLGALLDKDNQSILNAINKANGIELTLDQV FT DIIDVTPTSAIVKAKENNNYQGEVTVTFTVKKQLEQEAKVVNLGALFNKDDNSIFETFK FT KLNGNVNLNQDDVTIGERRNGSATITVKSKNDKYQGQVEVKFTVKQKLQNIIRNTDLGY FT IKEENFGSILKAINEKNPGINLTSSDIAWHSLQTGQQVKIFPETNSQWKPSNKYQGEVI FT VTFNTKAPWKEQPHKYDGTKVIEIGWITLKDGTVQIPTFNKYTTEVPAYLPPFITNLNG FT AFSQLESSSVKNLDKWDTSNVTNMRSMFIYAEKFNQDISNWNTSNVTNMKRMFYGADNF FT NQPIGNWNTSNVTNMEFMFYRADAFNQNISNWNVNNVTKWSHFDWNYGNYYRPHQIPPK FT FRNYNPNNTKTLSIALGIVGGVVGISVLASTIYLYKRKKINQ" FT gene 226062..227186 FT /locus_tag="MCAP_0187" FT CDS 226062..227186 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0187" FT /product="transposase (IS3 family), putative" FT /note="Homology to IS3 family transposases. Last gene of FT Tra Island II. This island spans nucleotides 205021-227425 FT and encodes ORFs MCAP_0167-MCAP_0187; identified by match FT to protein family HMM PF00665" FT /db_xref="GOA:Q2SST7" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q2SST7" FT /protein_id="ABC01539.1" FT /translation="MLMKYSLEFKHKVFNEFKFKSLKELSSIYNINYNTLKYWKYQTQK FT ILLKKINHQAKVLFKHQQNLNGLLKIKEIWQKHNKKSISVFHQIYQIQKEFDIPINKIL FT NTISVSKSLYYKRLKQVEVNINKPSKLEQLIIKIFVNNHNLIGYRKIKQKLFELYNLVV FT NHKVILKIMRKWNLVVGWLKNKSKTPHHKSGKNKFNIPDLVNRNFNQFKQQGQVVYTDV FT TYITLNKQKYYLSTTIDGFSKEIIDYRISNKNDTHLVVKNLKHTIKKYQQLNIDISGLI FT IHSDHALVYESKQFRKLCLKYNIRQSMGVNYSCLDNAVIESFHGQLKKGTIHSNKKFYK FT SIFDYLKNIDIWCKWYNKSKNSSIKLNKRKLLIC" FT misc_feature 227451..228662 FT /note="C-terminal portion of Tra Island II disrupted gene FT in MCAP_0166; contains lppQ-Variable-Repeat-Peptide motif; FT MCAP_0188" FT gene 228765..229850 FT /locus_tag="MCAP_0189" FT CDS 228765..229850 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0189" FT /product="multiple sugar ABC transporter, ATP-binding FT protein" FT /note="This looks like an ATP binding protein for a sugar FT ABC transporter; however there are no other ABC transporter FT components in the region; identified by similarity to FT SP:Q00752; match to protein family HMM PF00005" FT /db_xref="GOA:Q2SST6" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q2SST6" FT /protein_id="ABC01517.1" FT /translation="MKVELRNISKKYEGNSFYTLENIDLTINDNDFCVILGPSGCGKTT FT LLRIIAGLNSITKGDLLFDGVKVNNLLPKDRDIAMVFQSYALYPHYNVYKNLAFGLEMK FT KEKKEIINHRVRGAAKLLNIEKYLFKKPKELSGGQQQRVALGRAIVRKPKLFLMDEPLS FT NLDAKLRESMRTELVSIHRILGTTTIYVTHDQLEAMTMATKIVLMNNQVIQQVGKPEEF FT YNKPNNLFVAKFIGTPTMNVLEGKLEDNCFISNINNYKVKLSDEELELIKKEEVTKLYL FT GIRSEDAQLVKTTHKTLNIVASVINTELLGMNKQVTCELTPGNNFVITTSKDNDVKIDD FT KVGIKINKYHLFNGITENRIG" FT gene 229949..232246 FT /locus_tag="MCAP_0190" FT CDS 229949..232246 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0190" FT /product="glycosyl hydrolase, family 65 (trehalase)" FT /note="identified by match to protein family HMM PF03632; FT match to protein family HMM PF03633; match to protein FT family HMM PF03636" FT /db_xref="GOA:Q2SST5" FT /db_xref="InterPro:IPR017045" FT /db_xref="UniProtKB/TrEMBL:Q2SST5" FT /protein_id="ABC01837.1" FT /translation="MNTKIDVNIKRLFEVDPWKLVENKLPDNSYDFRLSESITSLGNEY FT LGMRGNFEETYSGDTHKGCYVGGLWYPDKTIVGWWKNGYPNYFGKVINAVNLLGLNVFI FT DNIELDLFKQTPSSYKRILDLKQGVLSREFVTNINNKEIKVQTQRFVSIDTKELVAIKY FT SITSNKDISLDLTSYINGDVINRDSNYKTKFWTHLDSKATNNSQLVVSKMIENNFDIER FT FSYACYATNSYNLKTKDIVFDQSNLYAKTTYKFDLKANQTLIFYKLVTLVHSLNYSEDK FT LKENAIKINNQINQFDYEQLKEKHTSLWDKRWLTSDVKIIGSDLDQQAIRFNLFQLFCT FT YYGNDDRLNIGPKGFTGEKYGGATYWDTEAYCLPLYLKTSDPKISRNLLKYRYNHLTKA FT VENAKLLGFKGALYPMVTFNGVECHNEWEITFEEIHRNAAMVYAIYNYTNYTGDFDYIK FT EFGMDVMIEVSRFWADRVHYHSIKDKYFIHGVTGPNEYENNVNNNWLTNLMCQWVLSYT FT LEMLDKLNLNKSKWNLSDDETNKWVDIINKIYLPYDKDLDIFVQHDTFLDKDLRHKDLL FT SKDERPLNKNWSWDRILRSVYIKQADVLQGIYYLWDKFTKEQITKNFKFYEQFTVHESS FT LSPCVHSMIAARIDLMDKAYEFYNRTARLDLDNYNNDTDDGLHITSMTGSYLAIVEGFG FT GMLVRNNIPCFSPKLPKQWNGYEFNINFRNRVLKVKHHKTEVEIQLIKGQALKINLFDK FT EYLLESKIKIEV" FT gene 232248..233852 FT /locus_tag="MCAP_0191" FT CDS 232248..233852 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0191" FT /product="glycosyl hydrolase, family 13" FT /EC_number="3.2.1.70" FT /note="identified by similarity to SP:P39795; match to FT protein family HMM PF00128" FT /db_xref="GOA:Q2SST4" FT /db_xref="InterPro:IPR013781" FT /db_xref="UniProtKB/TrEMBL:Q2SST4" FT /protein_id="ABC01684.1" FT /translation="MANYWWKNTVVYEMYLQSFKDSNNDGIGDLDGAIEKLEYLKELGI FT GAIWLTPIYDSPLVDNGYDISNYQSINQIYGGLEKFKKFVDKANELNIGIIMDLVLNHT FT SDQHEWFKQSRSSKTNPYRDYYIWRDQPNDITSAFGGSAWTYDKTTNQYYFHMFAKEQP FT DLNWQNPKVREEIAKMVKWWCDFGIMGFRLDVIELLGKRIDQKVLSNGPMLHKYIQDLR FT KNSWDSNEFLTVGECWSADIDHAIQYSNEKNEEFSMIFNFEPVTSFFNKDNKYKKKAVD FT FLELKQIYKKWQQGLHNKGWSGLFLSNHDLPRMVSRYGNDQKYRIQSAKTLLTTIFLMQ FT GTPFIHQGDEIGMTNVNWTDLNKYKDVEIKNTYQSEVLKKKTLTYEQFIEGILENSRDH FT ARTPYQWDDSKYAGFSNHQPWIDVNDNYKEINAKNELNNPNGIYHYLKKLIKFREESDY FT SQLIIDAKFELLDPNNTKLFAYSRIDQNRSIKIIANWSDEQVNISHLISQDNKVVLNTE FT IDFDQNTLKPWQTIIVE" FT gene 233874..234593 FT /locus_tag="MCAP_0192" FT CDS 233874..234593 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0192" FT /product="transcriptional regulator, gntR family" FT /note="identified by match to protein family HMM PF00392" FT /db_xref="GOA:Q2SST3" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q2SST3" FT /protein_id="ABC01809.1" FT /translation="MQDKKNKEITERQKIVNYLLDLIEHKKVDFKTPLPSEYFLVTKFK FT VSRGTVRSAFSDLKTKGLIKSEKGAGYFINPDFSFNRIKSIRNQLFTNKQEVFIKTELD FT TSNLVTIINKLHLSIDFNPDDYFSYIKVFYVNDLPVRYAKSFLNKNLFTNNIDVEKIKK FT SLIEYLEENSIKPFKLTSIIEAKLKDQMTRNLLVDNHQDYVICRYSVLYDKNNNIIEIT FT QHTINLDHFETSSIKYL" FT gene complement(234626..236419) FT /locus_tag="MCAP_0193" FT CDS complement(234626..236419) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0193" FT /product="oligoendopeptidase F" FT /EC_number="3.4.24.-" FT /note="identified by match to protein family HMM PF01432; FT match to protein family HMM TIGR00181" FT /db_xref="GOA:Q2SST2" FT /db_xref="InterPro:IPR004438" FT /db_xref="UniProtKB/TrEMBL:Q2SST2" FT /protein_id="ABC01673.1" FT /translation="MKRPEALKEYKWDFDYLYKNQDEWKNDLNYLIEISKEFKNFKNKL FT HEKETFLKCLDLEEKVDFITNKLSTYTRMGDTNQADEVYRTLEALLMNALQDIEIETSF FT ISPETKKIGFETISKWLKETKGYQRYLYGYEKFFEQAKHILSEHDEELLSKISKGYTAI FT SGMYDTLAYADRQEEIINYKGIDQTLTNSLFLEILQDSDPIKDQQLRLKASEIFSKNFS FT SKKHSFALIYEGILQSDYEDTKLRSYDSSLQASLSSDSISIDIYLKLLEIGKKYIKPLE FT DFLLLTKKHFKLDKFYPSDRQLKLVKEYDQTFTVEQAKEHIRKALSILGEEYLKNLEIA FT WGPNKIDYYEDTNKRDGAYSTGGHGVDPIILMNWDDKLNSVNTLAHECGHSVHTLFSEQ FT NQVYPLSQYPIILAEVASTINEHLLFDYMYKNAKLKEEKIYLLQERIFNLVSTFYRQIQ FT FADFEYRASQLVSKQTPLTSEVLNNLFKEVEDDYGYKVFDKLDDNTKSGYGWPRISHFF FT HSPFYVYKYAIDVTASYKLYDDIKNGNIQTTLDFLKAGGHKEPLKIMLDAGIDFNKEQT FT YLPLINGISDYIKELQSLLEE" FT gene complement(236419..237102) FT /locus_tag="MCAP_0194" FT CDS complement(236419..237102) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0194" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q2SST1" FT /protein_id="ABC01538.1" FT /translation="MKLKNWTFYKAKQLVKLNESNQVLEDIAVLILRPDINKEKTLLAI FT GLDKKVVNSLIIDLQNKVFEENELFEIFKENIGFVSTEEISEIDAKGLNLSTPIHQDNI FT KSIIKIYNLFLNVEPIEFDTKDYQDLENIQNQEDVFTNVDFENIPLPALLQTLNVGMEN FT YKQRVEEIFELNGKESINKKLELVNIQSNLIAFFDQALRKMDEIITKLSEQNAELIKKL FT ESQEK" FT gene complement(237118..238473) FT /gene="pepA2" FT /locus_tag="MCAP_0195" FT CDS complement(237118..238473) FT /codon_start=1 FT /transl_table=4 FT /gene="pepA2" FT /locus_tag="MCAP_0195" FT /product="cytosol aminopeptidase" FT /EC_number="3.4.11.1" FT /note="MCAP_0157 pepA1 is a paralog of MCAP_0195; FT identified by match to protein family HMM PF00883" FT /db_xref="GOA:Q2SST0" FT /db_xref="InterPro:IPR011356" FT /db_xref="UniProtKB/TrEMBL:Q2SST0" FT /protein_id="ABC01463.1" FT /translation="MLKFNDKKEDLTLICLTDVNNKPYVVDTDLSTSFISDEKTFYMVI FT KKDQKDLFRKLKIAFKNFVLENKYNINIDVDSFFNLLNECDCKEKLINTIYETIAFETY FT DQISYKKDNKPNKVVYNLLTSFDVKNLEEKEAIKMEFVNFARMLQDTPPNIATSEYLAE FT KVVQKAKEIDGLKVTVLGKKEATKLGMNLFLAVNAGSIYEPQAVVLEYVGDENEPKKAL FT VGKGITFDSGGYNLKPTKYLEGMKFDMSGAAIMLSTVMALAKMKAKVNVVGIGMFTDNR FT IGSTATLPQSVVKSMNGLTVEIDDIDAEGRLVLADGITYVIREKQATEIWEASTLTGSV FT VSALGSYATGVFTHCDKRWQLVKSASKFSGERMWRLPLYEEHLEEVRNDAINADITNAT FT KNYEAESSKAASFLNEFREDRPYVHFDIAGTDSIKGRGQGVLVRTLFEIFNK" FT gene complement(238589..239884) FT /locus_tag="MCAP_0196" FT CDS complement(238589..239884) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0196" FT /product="conserved hypothetical protein" FT /note="This protein has a Prosite motif for an FT ATP/GTP-binding site A (P-loop)." FT /db_xref="UniProtKB/TrEMBL:Q2SSS9" FT /protein_id="ABC01355.1" FT /translation="MIINRDFYLNQLINKMNNSKVKIITGIRRCGKSFLLFNLFYKYLI FT SINIPSDQIIKISLDGYDNRMYRTPTTLNNFIQSKITNKNKKYYLLIDEIQYCEPEINE FT FAPNTEKITFVDVLLSFYNNPNLDVYVTGSNSKMLSTDILTQFRGRGDEISLNTLSFFE FT IYDLFENKDKALKHYMLYGGLPAIYNLKTDEEKQKYLKNTFNETYIKDILERNSLISET FT GEILDTLLNFISSAIGSLTNPLRLANRFMSEKNIKINSTTISKYLNIFKESFLIRSSIR FT YDVKGNKYFNTPLKYYFTDIGLRNAKLSFRQYEENHIMENIIYNELYRRDFNIDIGIVE FT IQQNQNNKRTRTTLEIDFIASKNHQKYYIQSAYSIWDSQKKEQETRSLNNVNDSFKKIV FT VVYEDIIPWHDNNGIYYVGLKEFLLDESILNN" FT gene 240127..240747 FT /locus_tag="MCAP_0197" FT CDS 240127..240747 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0197" FT /product="chromate ion transporter (CHR) family, putative" FT /note="This protein and the one encoded by the adjacent FT both have significant hits to the chromate ion transporter FT (CHR) family HMM(PF02417). Combined the two proteins have FT the proper size and requisite 10 transmembrane FT alpha-helical spanners. In B. subtilis and other Gram FT positives the transporter is comprised to two genes like FT here. These tranporters are characterized chromate efflux FT pumps of P. aeruginosa and A. eutrophus; identified by FT similarity to SP:P17551; match to protein family HMM FT PF02417" FT /db_xref="GOA:Q2SSS8" FT /db_xref="InterPro:IPR003370" FT /db_xref="UniProtKB/TrEMBL:Q2SSS8" FT /protein_id="ABC01422.1" FT /translation="MNKKEYIKPPTFWNIFLFILLITFVGFGGGNAIMPVIKRYAVDKY FT KWLDEDEFHQNVVLTNMLPGPAAIQTTAYIAFKSLSKFKAYLVVSLASMPHTFFAIGLV FT FAFNKIPTQYLIVVQLGVLIAITGALLGFGYNYFKKGKKVMKLSLWLVLFLTTLIFSLF FT VPTPYNVPILVMILVIAIYSTIFIIRSKKSKKVDSNEIKKGIE" FT gene 240747..241424 FT /locus_tag="MCAP_0198" FT CDS 240747..241424 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0198" FT /product="chromate ion transporter (CHR) family, putative" FT /note="This protein and the one encoded by the adjacent FT both have significant hits to the chromate ion transporter FT (CHR) family HMM(PF02417). Combined the two proteins have FT the proper size and requisite 10 transmembrane FT alpha-helical spanners. In B. subtilis and other Gram FT positives the transporter is comprised to two genes like FT here. These tranporters are characterized chromate efflux FT pumps of P. aeruginosa and A. eutrophus." FT /db_xref="UniProtKB/TrEMBL:Q2SSS7" FT /protein_id="ABC01859.1" FT /translation="MLSFIAFLVTLVLLIFVSLSVFGGGQVFMPIFVWLWKSLNSWFKI FT EISEEFINTVFAVSNSTPGILSPKFAAITGYMIAQGQWWGFVAMIFTYLAFVLPAIFMM FT MIAIKYSQKFHQSTFFKKLIDIMNPVVAGIIIALAIEIFISCMFPYFVFNESVSEYWKF FT IDPNKPNQSMKFFTSWRLIALYCYVPIGIIISLFLYLKKVPIFGLIFANIIFCLVLFEP FT WLG" FT gene 242187..242651 FT /pseudo FT /locus_tag="MCAP_0199" FT /note="The start site here is not good. There is high amino FT acid similarity for >100 amino acids upstream of the FT current start site to genes in a number of species; however FT there is no reasonable start site between the current one FT and the stop codon upstream.; conserved hypothetical FT protein, authentic frameshift; this gene contains a frame FT shift which is not the result of sequencing error" FT gene complement(242913..246038) FT /locus_tag="MCAP_0200" FT CDS complement(242913..246038) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0200" FT /product="spermidine/putrescine ABC transporter, permease FT protein and spermidine/putrescine-binding protein" FT /note="This large protein has 7 transmembrate helices at at FT the NH2 end plus a signal peptide. Also there is no likely FT indendent substrate binding protein in the region; FT identified by match to protein family HMM PF00528" FT /db_xref="GOA:Q2SSS6" FT /db_xref="InterPro:IPR001188" FT /db_xref="UniProtKB/TrEMBL:Q2SSS6" FT /protein_id="ABC01485.1" FT /translation="MKKLLKRSYFAFVLLFIYAPILAMVIFSFNDGDTTIKWTHASFSW FT YESFFKNSPFIKSIITSLFVAVISTVVSLVIGTLAAIGLSRVNRVTRNKWVSIANIPLI FT NADVITAVSLMIVFLIMGLKFGILTLIMAHISFNVPYVLVTIMPRLKKIDPSLIDASYD FT LGAKNHQVMFKVILPILKPAIITAAAIAFAMSFDDFIISYFTGGMQTNVSTFIYTAKKT FT RPFIFVFGTCLVLVIALSIITWNTINLIRQSRLETKQKLINNNYKLKTISKLNKQLNEL FT SEVLKTKTIIKKSHNLSLWFKYFILKTKIYFYKLKSLDKKISKLQWKQYKLKSKIQKEE FT RYYSRLKKSEKKLKQLIKLFSSEKDVKKAAKLSLQIETLQEKVEFLKDQIEVIKEREQT FT ANLKVKKLQNKIKLLKQDLSQEQKPSKKLINWYNKKIKYFEEWIIELEEGKDYYKLKLV FT VEKLKNLQNIKKNKINELTDQLNILISKIYIPILVTKDIDLKIQNTTDLEVLNNLNQKR FT QIIIDKFTKVYSQKIDKTTILIQKIDKKTDKLKSKLLPSQNENISHFRSFFSKSWKAIL FT ISLIGIGAFSGLTAAYVLNNIYDLVVANWGEYIDPSLIGEFEQQASKKHNKRIRINYQI FT YNSNEILYNKLHTVDYDIMIPSDYMVQRLASENYLQKIDYSKLNIWGEFNSQNFNKNHE FT NNNDYKKLKVNKSLLELMTKSPINREDETKEIITKNPKGTYLNTNSILDYSIPYLWGDL FT VIVVNPTESNIKFLENSGIKFKNNNGTNDNKNKIEIDNSTLSWDILWKAAKAGKKVALN FT NDPKNVFMLGSQKLYQKVNLTKKSEIDAVGKELSDLLSNTGVSLHSDDLISLVVREKFD FT FAVMYNGDAAYANYVHNEGDEDYEKAEKSINYIYGRPNKKHDSNNRYESTNVFSDNIVI FT YKDAQNLDLAYEFINFLYDNSTKITEYVGVTSPLDSTIEEMTSAPSNKNEEQEDGEENE FT GGTYHNFKNLYDPITHQNANNYQTNNEQLSFTYNGKIDEYLVNSFNNLLANK" FT gene complement(246023..247015) FT /locus_tag="MCAP_0201" FT CDS complement(246023..247015) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0201" FT /product="spermidine/putrescine ABC transporter, permease FT protein" FT /note="This and other orthologous mycoplasma FT spermidine/putrescine ABC transporter, permease proteins FT have 45 amino acids at the NH2 end not present in otherwise FT very similar proteins in other bacteria; identified by FT similarity to SP:P23860; match to protein family HMM FT PF00528" FT /db_xref="GOA:Q2SSS5" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q2SSS5" FT /protein_id="ABC01781.1" FT /translation="MENKNLKDNSVIENKIINQDELEQVIETIEKQKKRESLRLKVKDV FT NHYLSKTKLFHFSKDKVWPILAPFILVMLILVILPLVSILIYAFIQPADGITLFKISFE FT KFAKLFTSNGILYSLFLSILYAIVAGMLCVLIGYPIALMMAQMKSKILARNMWVIVTMP FT MWISMLLKVLGLQTLFYLLADFAIGTPIAIIIGMTYMFLPFAIAPIYDSLESRQTDLEE FT AALDLGASKFRTFWSITLRSSMPGVLTAFSLVLVQAATSLIVVHYMGGGRIYLVSAAIE FT SYFFQGNDFGYGAAVSVVLAILVFGLMLVMKLISNKFEMKGNKRKWKNS" FT gene complement(247015..248070) FT /locus_tag="MCAP_0202" FT CDS complement(247015..248070) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0202" FT /product="spermidine/putrescine ABC transporter, FT ATP-binding protein" FT /note="identified by match to protein family HMM PF00005" FT /db_xref="GOA:Q2SSS4" FT /db_xref="InterPro:IPR017879" FT /db_xref="UniProtKB/Swiss-Prot:Q2SSS4" FT /protein_id="ABC01657.1" FT /translation="MENNILELRNVTKEYDGQVVLKGISFNVKEGEFITLLGPSGCGKT FT TILKIIGGSQKPNSGEILFEDKNLIPIPINKRQFNTIFQSYALFPHLNVFDNVAFGLTI FT KKTKKDIIEREVMRQIRQVGLEGYENKKIDELSGGQKQRVAIARALVMKPKVLLLDEPM FT AALDVKLRKTMQEELKRLQQDIGITFIMVSHDQEEALSMSDRIVVMNQGTIQQIGTPEE FT IYNEPENAWVANFIGSSNIITDGIFLEDNKIKFDGKVFECIDTNFGENESSIDIIIRPE FT DIIIKNPNNGFFNAKVIKTTFKGIHWEVVVETSKKRQWIIHTINEYDIDQQVSIKWKPA FT NVHVMWKEVDN" FT gene complement(248432..248791) FT /gene="rplT" FT /locus_tag="MCAP_0203" FT CDS complement(248432..248791) FT /codon_start=1 FT /transl_table=4 FT /gene="rplT" FT /locus_tag="MCAP_0203" FT /product="50S ribosomal protein L20" FT /note="identified by similarity to SP:P55873; match to FT protein family HMM PF00453; match to protein family HMM FT TIGR01032" FT /db_xref="GOA:Q2SSS3" FT /db_xref="InterPro:IPR005812" FT /db_xref="UniProtKB/Swiss-Prot:Q2SSS3" FT /protein_id="ABC01370.1" FT /translation="MARVKYGKVTRARRKRWIKLAKGYFGTKKSSYKKAHEQVIRSMAY FT AFIGRKERKRDFRSLWIVRINAAVRPEGLSYSTFMHGLKLANININRKMLSELAINNSE FT EFKQIVQQAKKALNK" FT gene complement(248810..249001) FT /gene="rpmI" FT /locus_tag="MCAP_0204" FT CDS complement(248810..249001) FT /codon_start=1 FT /transl_table=4 FT /gene="rpmI" FT /locus_tag="MCAP_0204" FT /product="50S ribosomal protein L35" FT /note="identified by match to protein family HMM PF01632; FT match to protein family HMM TIGR00001" FT /db_xref="GOA:Q2SSS2" FT /db_xref="InterPro:IPR018265" FT /db_xref="UniProtKB/Swiss-Prot:Q2SSS2" FT /protein_id="ABC01449.1" FT /translation="MPKMKTKKSLAKRVTVKSNGTLKRAKAYRSHRATGKTTKQKRQLS FT KATIISKVDMKNLKGLLQ" FT gene complement(249027..249572) FT /gene="infC" FT /locus_tag="MCAP_0205" FT CDS complement(249027..249572) FT /codon_start=1 FT /transl_table=4 FT /gene="infC" FT /locus_tag="MCAP_0205" FT /product="translation initiation factor IF-3" FT /note="identified by match to protein family HMM PF00707; FT match to protein family HMM PF05198; match to protein FT family HMM TIGR00168" FT /db_xref="GOA:Q2SSS1" FT /db_xref="InterPro:IPR019814" FT /db_xref="UniProtKB/Swiss-Prot:Q2SSS1" FT /protein_id="ABC01134.1" FT /translation="MENRNRNSRPIKNQDPVNEFIRAHQVLVIDEDKQNLGVMSKRQAL FT EIAKSKNLDLYQVGVQPDGTVITRIVNFGKLKYEQQKKSKEAKKHQTKIENKEIRITVN FT IGKHDLETKARKAKEFLEEGSRVKVSLKFRGREVVYLDLGQQTLNNFFELVSDVGKMEK FT EAKLNGKFLDMYIVPKKN" FT gene complement(249761..250363) FT /gene="def" FT /locus_tag="MCAP_0206" FT CDS complement(249761..250363) FT /codon_start=1 FT /transl_table=4 FT /gene="def" FT /locus_tag="MCAP_0206" FT /product="polypeptide deformylase" FT /EC_number="3.5.1.31" FT /note="identified by match to protein family HMM PF01327; FT match to protein family HMM TIGR00079" FT /db_xref="GOA:Q2SSS0" FT /db_xref="InterPro:IPR000181" FT /db_xref="UniProtKB/TrEMBL:Q2SSS0" FT /protein_id="ABC01689.1" FT /translation="MDKSYLLQDQIPSNSWLVKDHKKEIIRTKSTKIIDPTNLSNDEEL FT VLKKLIDFVTFSQDENNNNINNKDYLRPAVGLAAPQIGVNKDMFYVRFQLDNNKIEQYA FT MINTKLISTSTQIACLKNGEGCLSVDNDHLGFVPRHYKIVVQGYDWLTKQYLTLTLRNY FT QAIVFQHEMDHNIGILYYDHINKTDPLYKDNSWIIIE" FT gene 250437..250994 FT /locus_tag="MCAP_0207" FT CDS 250437..250994 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0207" FT /product="methyltransferase, putative" FT /note="identified by match to protein family HMM PF03602" FT /db_xref="GOA:Q2SSR9" FT /db_xref="InterPro:IPR016065" FT /db_xref="UniProtKB/TrEMBL:Q2SSR9" FT /protein_id="ABC01800.1" FT /translation="MHIISGKYKKMKLQTLDSSITRPTLTRIKEDMFNIISNYFIFENK FT TSLDLFGGSGSLSIEGLSRGIKFAIINDLNKDANKIISFNLKKIPTSDYVLYQKDYLEL FT LNLLKIQHQKVDLVYLDPPFKQIDYYYVVFDFLINNNLLNDWAIIISETNKQLDLTKIK FT DLSLLKFKDYNKKYLYIFRLEK" FT gene 250997..251890 FT /gene="gmk" FT /locus_tag="MCAP_0208" FT CDS 250997..251890 FT /codon_start=1 FT /transl_table=4 FT /gene="gmk" FT /locus_tag="MCAP_0208" FT /product="guanylate kinase" FT /EC_number="2.7.4.8" FT /note="identified by match to protein family HMM PF00625" FT /db_xref="GOA:Q2SSR8" FT /db_xref="InterPro:IPR017665" FT /db_xref="UniProtKB/Swiss-Prot:Q2SSR8" FT /protein_id="ABC01818.1" FT /translation="MKKGKMIIISGPSGVGKGSVNGELLQNPDLRLKYSVSMTTRKPRN FT GEINGVNYFFVSNEEFAKAIVNDELIEYAHFVGNSYGTPRKYVEQELKKGNNVILEIEV FT DGATQVLNKEANVLSIFLMPPNLTELANRIRGRQTEDEEKIKARLDKALLEIPLKHNYQ FT YVIENDNVANAVAKITDVLHLEGLTDIKTPTVYERLEQIVEQIVKEKYMYFVNNWETNV FT KLLAKNEEEKNKAKNFDAETYLIKLLTKKVYHKVLGHGDFSKLLDKDFVDFKIQKLMFK FT INFFSVEQKHYNNDEF" FT gene 251853..253139 FT /locus_tag="MCAP_0209" FT CDS 251853..253139 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0209" FT /product="rRNA methyltransferase RsmB (sun protein), FT putative" FT /EC_number="2.1.1.-" FT /note="Although the TIGRFAM score is above the trusted FT cutoff, there is no characterised sun protein with >35% FT identity, The E. coli gene is only 28% identical; FT identified by match to protein family HMM PF01029; match to FT protein family HMM PF01189; match to protein family HMM FT TIGR00563" FT /db_xref="GOA:Q2SSR7" FT /db_xref="InterPro:IPR006027" FT /db_xref="UniProtKB/TrEMBL:Q2SSR7" FT /protein_id="ABC01627.1" FT /translation="MLNKNIIITMNSRSIAFDILKKVFVNKAYSNVLLNKISKKNLNQQ FT DKDFVFNLVHGVISNKIHLDYLLAKLIDVKKTSIDLQVILLISLYQMIYLNSIPNYAIV FT NESVNLIKTTSQKQANFINAILNKFLRFKDKYLEINLDNKDLELCILHSFSYELYLMLI FT KQYDKEIVNQIVVNNHQIPKLYIRVNTLKITSDQLFNKYKDIYLLEKTNVNDCLIANKT FT IINSDLYKNGFITIQDKASILVSQILNPSLNTKVLDMCSAPGGKLTHLSMILKNTGNIV FT ANEINESKIKLIKENITRLNCLNISVINMDARKIKQRQEFDYILLDAPCSGFGVFKRKP FT EIKLRFDQIQVNSIINLQEELLESAYYNLKNNGEMVYSTCTINQDENQNQINKFLNKHK FT DMIKLYEQQIFGFEENTDGFYICKLKKQH" FT gene complement(253143..254972) FT /gene="typA" FT /locus_tag="MCAP_0210" FT CDS complement(253143..254972) FT /codon_start=1 FT /transl_table=4 FT /gene="typA" FT /locus_tag="MCAP_0210" FT /product="GTP-binding protein TypA/BipA" FT /note="identified by similarity to SP:Q9EXN7; match to FT protein family HMM PF00009; match to protein family HMM FT PF00679; match to protein family HMM PF03144; match to FT protein family HMM TIGR00231" FT /db_xref="GOA:Q2SSR6" FT /db_xref="InterPro:IPR006298" FT /db_xref="UniProtKB/TrEMBL:Q2SSR6" FT /protein_id="ABC01613.1" FT /translation="MNNQKIINIAVIAHVDAGKSTLVDALLKQSGIFRQNQEVIEQVMD FT SNDQERERGITIYSKNCSITYKDYKINIVDTPGHADFSSEVERIMKTVDTVILLVDSSE FT GPMPQTRFVLQKALEIGLNPILFINKIDKKDQRSLEVVEEVIELFLELNATDEQLDFKT FT LYGIAKNGIAQYSLEEQSNDLTPLFETIINQIGSYPIELSNNDLVMQVSSLAYDSFIGR FT IGIGRIFEGNIKENQIISIVKNDRTIKQGKITKLMVYQGLNRVQVKQAFAGDIITFAGI FT EDISIGDTINNLNIIKPLKPIHIEEPTMSMNFLVNTSPFAGRVGKFVTSRNIKERLEKE FT VEVNVGLRIEPLINSEIEGFKVLGRGELHISVLIEAMRREGFELAISKPEVIFQRNPMT FT GDLLEPIEKVIINTPTEYSGTIINKLNQRKGIMLDMDSDGIRDKITYSIPLRGLIGFRS FT EFTNDTHGEGIMVKSSSGYELYKGEIVSRQNGVLVSMANGKSLPYALNNLEDRGILFIG FT PQVEVYEGMIIGQHSRDNDLYVNPTTAKKLTNTRASGTDDAVKLTPAKKMSLEEALEYI FT SNDELVEITPTDIRLRKRWLTQAEQKQHRNDKY" FT gene 255250..256059 FT /locus_tag="MCAP_0211" FT CDS 255250..256059 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0211" FT /product="lipoprotein, putative" FT /note="This ORF encodes tandem sequences containing the FT lppQ-Variable-Repeat-Peptide motif; identified by match to FT protein family HMM PF03382; match to protein family HMM FT TIGR02167" FT /db_xref="InterPro:IPR011889" FT /db_xref="UniProtKB/TrEMBL:Q2SSR5" FT /protein_id="ABC01834.1" FT /translation="MKKILTILTSFSLIATSSFLVVACKPAGIKNKAGKLKEESETNSK FT KENKEKNISESKEEMLQSDQSKSKRKTELDITKFDGGSKSNIGNNILAEIEDEEPIIKE FT SFKWWKDAKKDKRPHFFNPKDSSEILILGYKKEKKNKKEYYRLEEIPKHVKKVPKILPP FT VVTSLEGAFKNNENQIIDGIETWDTSRVKNMYQTFFKASKFNGDISKWNTSGVTDFGYM FT FYGASAFKRNLKDWNVSNDPFPVAFARDSGFENDKNLWPPFKNKDKQ" FT gene 256070..256867 FT /locus_tag="MCAP_0212" FT CDS 256070..256867 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0212" FT /product="lipoprotein, putative" FT /note="This ORF encodes tandem sequences containing the FT lppQ-Variable-Repeat-Peptide motif; identified by match to FT protein family HMM PF03382; match to protein family HMM FT TIGR02167" FT /db_xref="InterPro:IPR011889" FT /db_xref="UniProtKB/TrEMBL:Q2SSR4" FT /protein_id="ABC01239.1" FT /translation="MKKVLIALGSVSLIVTTSSILVACSDIKNKNVKGNLNNSNFNNKE FT NRKVKNQIKDQNQENFKDKKVGRENIDNLSANNETPNLKKIKKDIENNIFSRIEDERNF FT ILKNYNWLTMNKKGEVDHFINPDDSSEILVLGYEKEKDGYKLKQIPKHIKKVPPFLPKF FT ITNLEKSFQFNQNEKIIGIEKWDTKKVKNMFQMFFGAENFNYDISNWDTSNVENMNYMF FT SGAKNFKQDLSKWKVEKTPFQINFAKDSGFENDKNLWPPFKQK" FT gene 256990..258345 FT /gene="eno" FT /locus_tag="MCAP_0213" FT CDS 256990..258345 FT /codon_start=1 FT /transl_table=4 FT /gene="eno" FT /locus_tag="MCAP_0213" FT /product="enolase" FT /EC_number="4.2.1.11" FT /note="identified by similarity to SP:O69174; match to FT protein family HMM PF00113; match to protein family HMM FT PF03952; match to protein family HMM TIGR01060" FT /db_xref="GOA:Q2SSR3" FT /db_xref="InterPro:IPR000941" FT /db_xref="UniProtKB/Swiss-Prot:Q2SSR3" FT /protein_id="ABC01346.1" FT /translation="MSRIERIFAREILDSRGTPTVEVEVWTEFGGYGCAKAPSGASTGV FT NEALELRDGDKARYNGKGVLKAVKNVNEIIAPELIGIDALDQLTVDRKMLDLDGTEFKT FT KLGANGILAVSLAVAKAAASELDIPLYKYLGGVQAKKLPVPMLNVINGGEHADSAIDFQ FT EFMIMPVGAKSFSEALRWSSETFQALKSLLKSKKDITAVGDEGGFAPNFEWAYEKHDLE FT SFKKKTPAEIALDLLVDAIKKAGYKPGKDGIMIAMDCASSELYLEDKKYHFKKIEKVTN FT QEWSLTSDEMISYLEKLVNNYPIISIEDGLAETDWEGFTKLTQKIGDKVQIVGDDLFTT FT NPKFIKQGINKKAANSTLIKLNQIGTLSETVEAITMTQKAGWTAVVSHRSGETEDTTIA FT DLAVAFNTGQIKTGSMSRSDRIAKYNRLLQIESELGQNAIYDGLEAFYNLNK" FT gene 258411..259232 FT /locus_tag="MCAP_0214" FT CDS 258411..259232 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0214" FT /product="PAP2 superfamily domain membrane protein" FT /note="identified by match to protein family HMM PF01569" FT /db_xref="GOA:Q2SSR2" FT /db_xref="InterPro:IPR016118" FT /db_xref="UniProtKB/TrEMBL:Q2SSR2" FT /protein_id="ABC01393.1" FT /translation="MKNKINHYYIYSGIVFIILISLFIIGSIYDFKIASFKRVENLSLA FT IFVSNFGVLIPSISLTIPLIYLIKSLKFKNKLKINNVIETLIYFVIPLGFVIFNFLYEK FT QSVVYSIISSLLCLIIISILIYYFHINKEIIIDSNLSIYKAIIVLTTIIGLLILVNILK FT LLFNRPRPTDLELYRNWWNIKWTSWKHNSFPSGHTYSATTLLFVLLLFNKINKKAYLWI FT SVTWLIIIIVAMSRIVLNKHFLTDVVLSMLLSFTILTTILIVNHKKGKLFI" FT gene 259234..259665 FT /locus_tag="MCAP_0215" FT CDS 259234..259665 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0215" FT /product="holliday junction resolvase, putative" FT /EC_number="3.1.-.-" FT /note="identified by match to protein family HMM PF03652; FT match to protein family HMM TIGR00250" FT /db_xref="GOA:Q2SSR1" FT /db_xref="InterPro:IPR006641" FT /db_xref="UniProtKB/Swiss-Prot:Q2SSR1" FT /protein_id="ABC01537.1" FT /translation="MTQSIIAFDIGSKTIGLAYSSGVIASSLDTIRFEEYNFDQGLKQL FT ELYLKKYNPSIIVVGYPKNMNNTIGERAEMVDYVIEMFLDMYKSFNKDQIIKVDERRTT FT KIAKNILIQANLTREKQKKYKDSLAAQLILELYLESRKL" FT gene 259671..260243 FT /gene="hpt1" FT /locus_tag="MCAP_0216" FT CDS 259671..260243 FT /codon_start=1 FT /transl_table=4 FT /gene="hpt1" FT /locus_tag="MCAP_0216" FT /product="hypoxanthine phosphoribosyltransferase" FT /EC_number="2.4.2.8" FT /note="MCAP_0765 (hpt2) is a paralog of MCAP_0216; FT identified by similarity to SP:Q02522; match to protein FT family HMM PF00156; match to protein family HMM TIGR01203" FT /db_xref="GOA:Q2SSR0" FT /db_xref="InterPro:IPR002375" FT /db_xref="UniProtKB/TrEMBL:Q2SSR0" FT /protein_id="ABC01534.1" FT /translation="MQKLHPLVKEVLFTREQIQKRTKEIAKEVEHYYKDKPLKDNSLLV FT VGLLKGCVPFYTDFCMVCDLTMEMDFMVVSSYHGSTSSNSAPKINLDLNTDVKDRDILI FT VEDIIDTGFTLKYVKEYLLNKGAKSVKILTMLDKPSGRKIDLTPDWVCFTIDPCFVIGY FT GLDYQEKIRNLPYVAVCDTTKLDDWKW" FT gene complement(260290..261069) FT /locus_tag="MCAP_0217" FT CDS complement(260290..261069) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0217" FT /product="glycerol uptake facilitator protein" FT /note="identified by match to protein family HMM PF00230" FT /db_xref="GOA:Q2SSQ9" FT /db_xref="InterPro:IPR000425" FT /db_xref="UniProtKB/TrEMBL:Q2SSQ9" FT /protein_id="ABC01336.1" FT /translation="MLEQIILTELFGTALLVLLGNGIVANVVLKGTKGQNAGWISITAG FT WGFAVFIAAGISAGLGGVAHLNPAVTIMFAIKAADNSFGFNTAALTQISGVAMFFIVLV FT VQFIGAILGSIFVDLLYWKHILATKSDNDFQPRVLAIHSTGATHKAPVFNFLMEFVGTI FT VLLVGIWGLTAAKSSAFTAIGPLAVGLLVFGIGLSLGGTTGYAINPARDLGPRLVHTFL FT PLKDKGSSEWKYSWIPGLGPIAAAIFIGLIAMAVKTA" FT gene complement(261105..262622) FT /gene="glpK" FT /locus_tag="MCAP_0218" FT CDS complement(261105..262622) FT /codon_start=1 FT /transl_table=4 FT /gene="glpK" FT /locus_tag="MCAP_0218" FT /product="glycerol kinase" FT /EC_number="2.7.1.30" FT /note="identified by similarity to SP:P08859; match to FT protein family HMM PF00370; match to protein family HMM FT PF02782; match to protein family HMM TIGR01311" FT /db_xref="GOA:Q2SSQ8" FT /db_xref="InterPro:IPR005999" FT /db_xref="UniProtKB/Swiss-Prot:Q2SSQ8" FT /protein_id="ABC01712.1" FT /translation="MNNIKKYILTLDEGTTSARALITDKEGNIIAVEQSEFTQYFPKEG FT WVEHDAIEIWNTQRSALVQVLNKSGIDPSQIEAIGITNQRETAVVWNKETGLPIYNAIV FT WQDQRTADYCQTFDKDTLEMVKQKSGLIINPYFSGTKVKWILDNVPNARQLAKEGKLMF FT GTINTWLIYRLTGGEVFVTDHTNAQRTLLYNIHTNDWDDELLKLFDIPRNILPEIKSCS FT EVYGYTFKGLFSKGNEQRIKIASSIGDQQSALFGQLCLEKGQVKVTYGTGCFILTNTGE FT EIVKSNHGLLTTVAYSFKDKVYYALEGSVMIAGAAVQWLRDNLRIVYNAIETEWYAGQV FT KDDRRVYVVPSFTGLGSPYWDSFSRGAIFGLDRGTRREHIVRATLEAIAYQANDVVDAM FT GKDMKKPIEIFKVDGGAANNKFLMQFQSNISQSKVIKPTNIETTAMGAAFMAGLAVGYW FT ENVEELKKTYKVHFELTPELSKPEVDKLIKGWKVAVQRTFKWVEEIE" FT gene complement(262639..263802) FT /locus_tag="MCAP_0219" FT CDS complement(262639..263802) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0219" FT /product="glycerol-3-phosphate dehydrogenase, putative" FT /EC_number="1.1.3.21" FT /note="While the annotation of MCAP_0129 is putative, M. FT capricolum does have glycerol-3-phosphate dehyrogenase FT activity; identified by similarity to GP:26454097; match to FT protein family HMM PF01266" FT /db_xref="GOA:Q2SSQ7" FT /db_xref="InterPro:IPR006076" FT /db_xref="UniProtKB/TrEMBL:Q2SSQ7" FT /protein_id="ABC01157.1" FT /translation="MRQTKVDICIIGGGIIGASIARELAKFDKKIVVLEANPRLALETS FT SHNSGLVHGGFDPRPETLNAKLNVLGKKRYEDWIKEMDFPYLRIDSTIVAFNDDEMKHV FT HMLYDRGLINGLDPKEMEIINAKELQKREPNINKQAVGALVCNSSIAIDPVVLTTTLMR FT NAIKNGVELKVNSKVIDIKKNDNIFEIKTSKNEVIKSEVIVNVAGHYADIIAQMAGYGD FT FKLTTRRGEYRILDKSEAGIVNSVVFMVPTIHGKGVIVAPMLDGRVMVGPTALDGVPKE FT ETLLVTQQQYDNIGKIGKHLIPNINMDKTCTVYAGSRPIDIETNDFVIRPAKNDKKFIN FT AAGMKSPAIASAPAIADMVCDLVRNAFDKLEKKANWQPKEEAILPWK" FT gene 264143..265123 FT /gene="pfkA" FT /locus_tag="MCAP_0220" FT CDS 264143..265123 FT /codon_start=1 FT /transl_table=4 FT /gene="pfkA" FT /locus_tag="MCAP_0220" FT /product="Phosphofructokinase" FT /EC_number="2.7.1.11" FT /note="identified by similarity to SP:P06998; match to FT protein family HMM PF00365; match to protein family HMM FT TIGR02482" FT /db_xref="GOA:Q2SSQ6" FT /db_xref="InterPro:IPR015912" FT /db_xref="UniProtKB/Swiss-Prot:Q2SSQ6" FT /protein_id="ABC01496.1" FT /translation="MIKKIGILTSGGDAPGMNNAIAGVVKTASSKGIEVYGINDGYKGL FT VNGWFEKLNVEKTLDILSRGGTYLGSARLPEFKELEVRQKAVANLKKAGIEALVVIGGD FT GSYMGAQRLTEMGINCIGLPGTIDNDIASTDYTIGFHTALNTIVEAVDRIRDTMQSHNR FT ADVVEIMGNGCGDLVTYTAVATGAEIFSPAEDLLTIEQMGQKAKQFRLLGKKSLIILVS FT EKLYGISAEEIAEKIQKISGYETKATVLGHIQRGGRPTAMDRYIAFTAGMFAVEKLAEG FT KGGLFIGLENNKLVARDIDSTLNMKKEDKKPFIKNLREINGHFSK" FT gene 265192..266628 FT /gene="pyk" FT /locus_tag="MCAP_0221" FT CDS 265192..266628 FT /codon_start=1 FT /transl_table=4 FT /gene="pyk" FT /locus_tag="MCAP_0221" FT /product="pyruvate kinase" FT /EC_number="2.7.1.40" FT /note="identified by similarity to SP:P14178; match to FT protein family HMM PF00224; match to protein family HMM FT TIGR01064" FT /db_xref="GOA:Q2SSQ5" FT /db_xref="InterPro:IPR015793" FT /db_xref="UniProtKB/TrEMBL:Q2SSQ5" FT /protein_id="ABC01270.1" FT /translation="MTKETLQKRMKRTKVITTIGPSTHSAEAIKELFNNGMTTIRLNFS FT HGSYEEHGYRIKAAKKISKALNKPISIILDTKGPEIRLGKFKDNKQEVVKGQSITIYTD FT NYSYLNKECVQGEMTVAYDMSVDLKPGDMILIDDGKLELTVDSVEPQIIKATAFNHHIV FT KTNKRVNLPGIDFSLPFLSEKDEKDILFGCEQGVDYIAASFVNTAENVRQIKEILTKAN FT ANHIQIISKIESQVGLDNIDEIIEESDGIMIARGDLGLEIPYYDVPYWEKIIIRKCREK FT GKIVIVATQMLETMTENPSPTRAEVTDVYFATELGADATMLSGESAAGDYPFLTVHTMS FT TINKRAEVEFYNKIYYQVQLDNARNSTSGPRAEIADLLATKTKDGEYKYAIVLSKTGEL FT LKTISKFRPNVTILGVSPDKKLWTSFGVWHSIFMNKVDTLDNLDNNIEKLSEIAKSWGA FT KLGEKVLVVRSTAIKEIEVI" FT gene 266899..268818 FT /gene="thrS" FT /locus_tag="MCAP_0222" FT CDS 266899..268818 FT /codon_start=1 FT /transl_table=4 FT /gene="thrS" FT /locus_tag="MCAP_0222" FT /product="threonyl-tRNA synthetase" FT /EC_number="6.1.1.3" FT /note="identified by similarity to SP:P18255; match to FT protein family HMM PF00587; match to protein family HMM FT PF02824; match to protein family HMM PF03129; match to FT protein family HMM TIGR00418" FT /db_xref="GOA:Q2SSQ4" FT /db_xref="InterPro:IPR018158" FT /db_xref="UniProtKB/TrEMBL:Q2SSQ4" FT /protein_id="ABC01544.1" FT /translation="MKIKLLDGSIKEYNQEISVKDISLEIGLKNVIGAKINDQLFDINY FT LIKNDCDLELITNKSKEYDLMLNLTAAFITSYAINNLKSISQAEIFYNADEMEFSTTFN FT TEPRLVLDDLKNIQTNINNLLTSNLEIKSNIYDLNKALEILNNDYQKYLAKQMYEKYHY FT VKVYSINDFYMVVNKALILNSNFIKIIDIEQLTGSYWLNDKNNIMLQRVHGLCATSSSE FT LKNKKVILEDRRSRDHRLINKRLNIFGFDQLVGAGLPLWLPNGFIVKNEIEKYLRQKEW FT EYDYIPVETPPIGTVELYKTSGHWDHYGEDMFQPFNGGKGSDEQFILRPMNCPHHIAVY FT KQEQRSYRDLPLRICEHAIQHRFESSGSLTGLERVRGMKLTDSHIFVRSDQIEDEFRST FT YKLISEVLKTFNIQIDYLSLSLRDPNDKVKFYKDDLMWDKAESSLEKVLIDLGLKYEKR FT IGDAAFYGPKLDIQIKTAQNHEITVSTIQLDFLMPNKFDLTYIDKDQKLVRPIMIHRGL FT IGTYERFIATLLEQTKGVLPLWLAPKQVEIIPISESNLEYANLIHQKLKKEFIRSHIDL FT RDERLSYKIRDAQTKKVPYQLVLGNKEVENNTITYRQYGSDAQITVSIQEFIDMLKQQI FT NDKK" FT gene 269448..270812 FT /locus_tag="MCAP_0223" FT CDS 269448..270812 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0223" FT /product="NADH oxidase" FT /EC_number="1.6.99.3" FT /note="MCAP_0223 is a paralog of MCAP_0858; identified by FT match to protein family HMM PF00070; match to protein FT family HMM PF02852; match to protein family HMM PF07992" FT /db_xref="GOA:Q2SSQ3" FT /db_xref="InterPro:IPR013027" FT /db_xref="UniProtKB/TrEMBL:Q2SSQ3" FT /protein_id="ABC01113.1" FT /translation="MKVIVLGTNHAGTTAVRTLKRLDPTCEVTTYDKNDAISFLGCGIA FT LWVKGEVKDPNMLFYATPEILRSEGVNVFMNHEVLSVDDKAKTVSVKDLKTGEIKTDNY FT DKLIVATGTWPLIPPIPGIDLEGVQICKNYHHAKKILEHNLDKSYKKIAVVGAGYIGVE FT LVEAFSEYGKDVTLIDVANRIMPVYYDQEFTDLMQEKMTKAGVKLSLGAKVIEFKGENG FT KVTQVVTDKGNIDVDYVIFSVGVRPQSAILEGVCDLDDRKAIVTNDFMQTTNPDIYAIG FT DCAQVYNKAMNKNVPIQLATTAVRTGVIAAFNVIKGNNLKSPGFTGANGISVFGLHMAS FT VGISVESAKRMGYDIDFIDFKDLDRPEFMSTANEVLFKVVWDKKTRKIIGAQVASEKNH FT TEVMYMLALGIQKDLTIDELPLVDIFFLPHFNKPFNFISLAGLEVLGLNYFKKEK" FT gene 270824..271828 FT /locus_tag="MCAP_0224" FT CDS 270824..271828 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0224" FT /product="lipoate-protein ligase" FT /EC_number="6.-.-.-" FT /note="identified by similarity to SP:P32099; match to FT protein family HMM PF03099; match to protein family HMM FT TIGR00545" FT /db_xref="GOA:Q2SSQ2" FT /db_xref="InterPro:IPR005107" FT /db_xref="UniProtKB/TrEMBL:Q2SSQ2" FT /protein_id="ABC01213.1" FT /translation="MINLLISKYHDPAMNLAIEEYLTYHYKAKEPIVFFWQNANTIVVG FT RNQNAFAEINLEAAQKDNVKIVKRNTGGGTVYQDLGNVCYSLIVDNSTDDVDYQKALQP FT IITYLNQKNINAMFSGRNDMVIDGYKVSGNAQLKTNEKTLVHGTLLFDVDLSKMPKYLV FT VDPEKLKHQQIRSKPARVRNIKEFFKDINIDIDLSTFINDVVSSYVKNEKIKWIELTDQ FT EKQYIQSRKETKFDQWDWTFGKNTVFSLVKKQYLESKGFITLNLDVDNGVITNIKIYGD FT FLGTQGTEKLEAKLIGVKFDKKDVEKVLNQFDLEAIFAKNFTSDDITNLLFKD" FT gene 271863..272975 FT /gene="pdhA" FT /locus_tag="MCAP_0225" FT CDS 271863..272975 FT /codon_start=1 FT /transl_table=4 FT /gene="pdhA" FT /locus_tag="MCAP_0225" FT /product="pyruvate dehydrogenase complex, EI component, FT alpha subunit" FT /EC_number="1.2.4.1" FT /note="identified by similarity to SP:P21881; match to FT protein family HMM PF00676" FT /db_xref="GOA:Q2SSQ1" FT /db_xref="InterPro:IPR001017" FT /db_xref="UniProtKB/TrEMBL:Q2SSQ1" FT /protein_id="ABC01284.1" FT /translation="MTYLGKFDPLKNEKVCVLDKDGKVINPKLMPKISDQEILEAYKIM FT NLSRRQDIYQNTMQRQGRLLSFLSSTGQEACEVAYINALNKKTDHFVSGYRNNAAWLAM FT GQLVRNIMLYWIGNEAGGKAPEGVNCLPPNIVIGSQYSQATGIAFADKYRKTGGVVVTT FT TGDGGSSEGETYEAMNFAKLHEVPCIFVIENNKWAISTARSEQTKSINFAVKGIATGIP FT SIIVDGNDYLACIGVFKEVVEYVRKGNGPVLVECDTYRLGAHSSSDNPDAYRPKGEFEE FT MAKFDPLIRLKQYLIDKKIWSDEQQAQLEAEQDKFVADEFAWVEKNKNYDLIDIFKYQY FT DKMDIFLEEQYKEAKEFFEKYPESKEGGHH" FT gene 272975..273964 FT /gene="pdhB" FT /locus_tag="MCAP_0226" FT CDS 272975..273964 FT /codon_start=1 FT /transl_table=4 FT /gene="pdhB" FT /locus_tag="MCAP_0226" FT /product="pyruvate dehydrogenase complex, E1 component, FT beta subunit" FT /EC_number="1.2.4.1" FT /note="identified by similarity to SP:P21882; match to FT protein family HMM PF02779; match to protein family HMM FT PF02780" FT /db_xref="GOA:Q2SSQ0" FT /db_xref="InterPro:IPR005475" FT /db_xref="UniProtKB/TrEMBL:Q2SSQ0" FT /protein_id="ABC01723.1" FT /translation="MAIINNIKAVTDALDCAMQRDPNVIVFGEDVGTEGGVFRATQGLA FT VKFGNDRCFNAPISEAMFAGVGLGMAMNGMKPVLEMQFEGLGLASLQNIFTNISRMRNR FT TRGKYTAPMVIRMPMGGGIRALEHHSEALEAVYAHIPGVQIVCPSTPYDTKGLILAAID FT SPDPVIVVEPTKLYRAFKQEVPDEHYIVPIGEGYKIQEGNDLTVVTYGAQTVDCQKAIA FT LLKETHPNATIDLIDLRSIKPWDKKMVIESVKKTGRLLVVHEAVKSFSVSAEIIATVNE FT ECFEYIKAPLSRCTGYDVITPFDRGEGYFQVNPKKVLVKMQELLDFKF" FT gene 273993..275309 FT /gene="pdhC" FT /locus_tag="MCAP_0227" FT CDS 273993..275309 FT /codon_start=1 FT /transl_table=4 FT /gene="pdhC" FT /locus_tag="MCAP_0227" FT /product="pyruvate dehydrogenase complex, EII component, FT dihydrolipoamide acetyltransferase" FT /EC_number="2.3.1.12" FT /note="identified by match to protein family HMM PF00198; FT match to protein family HMM PF00364; match to protein FT family HMM PF02817" FT /db_xref="GOA:Q49110" FT /db_xref="HSSP:1QJO" FT /db_xref="InterPro:IPR004167" FT /db_xref="UniProtKB/Swiss-Prot:Q49110" FT /protein_id="ABC01559.1" FT /translation="MFKVKFADIGEGLTEGTVAEVLVKVGDVVKEGQSLYFVETDKVNS FT EIPAPVAGKIAVINIKAGQEIKVGDVVMEIEDGSDTSATSEPKAETKSEAKVEVVEENA FT SVVGATPVSNDVIVRKQTTTVNKSSTIKATPLARKVAADLNIDLSLVTPTGPNQRILVA FT DIKNHQASSTQLASQPISQPAPTPSPSAHQTIAPTIKVVEPSAPLSWDEVPMNGVRKAT FT VKAMTKSHTEIAAFTGMKNTDITETHKMRTELKDHAAASGIKLTYLAFIIKAVAKSLRD FT MPNINVRGDFANNKIQFMHNINIGIAVDTPNGLMVPVIKGADHLSVFEIAIKISELANK FT AKDGKLTRAEMTEATFTVSNFGSVGLDYATPIINSPESAILGVGTMSQTPLYINGELQK FT RFIMPLSMTCDHRIIDGADAGRFLIKVQDYLSKPVLLFM" FT gene 275328..277217 FT /gene="pdhD" FT /locus_tag="MCAP_0228" FT CDS 275328..277217 FT /codon_start=1 FT /transl_table=4 FT /gene="pdhD" FT /locus_tag="MCAP_0228" FT /product="dihydrolipoamide dehydrogenase" FT /EC_number="1.8.1.4" FT /note="identified by similarity to GB:AAA21748.1; match to FT protein family HMM PF00070; match to protein family HMM FT PF00364; match to protein family HMM PF01134; match to FT protein family HMM PF02852; match to protein family HMM FT PF07992; match to protein family HMM TIGR01350" FT /db_xref="GOA:Q2SSP8" FT /db_xref="InterPro:IPR006258" FT /db_xref="UniProtKB/TrEMBL:Q2SSP8" FT /protein_id="ABC01436.1" FT /translation="MFKVKFADIGEGLTEGTVAEVLVKVGDVVKEGQPLYFVETDKVNS FT EIPSPVAGKIAIINISTGQEIKVGDVVIEIDDGSSTSTASTSKVEVVEENASVVGATPV FT SNDVLPSRAPKPKAEAKVEVVEENASVVGATPVSNDVLPSRAPKPKVEAPKVDVQIEDT FT FDVCVVGAGIGGYVTAIKSAQLGLKTLIIEKEYYGGVCLNVGCIPTKTLLKTSHVYHDI FT VHKAKELGIVLQNTENVVIDWAQALERKNGVVKKLTGGVKYLLDKNKVTQIKGEAIALD FT KNTISVNNKNYRVNNLVIASGSTPNHLPLPGFDQGRKDGIIIDSTGILSVPKIPETLVV FT IGGGVIGIEFSCLFASLGTKVTVLQGLPTILEMLDKDIIDAMTKELKNRYNIQVITNAS FT VKEFKDGSVVYQIDGQDQMIKGEYVLESVGRKTSLTGFENIGLELTPRKGVVVNEYQET FT NLDGVYAIGDVVGKSMLAQTAVKGAIVAANRIAKKANKAHAEDIVMNYDKVPSCIYTHP FT EVSMIGKTEQQLKQENIEYKAFKFPFSAIGKALADDDTSGFVKIIVEPKYKTILGAHII FT GNRATEMISEITAVIECEGTITEIANTIHPHPTMSEAIGEAAEALETGKAIHF" FT gene 277239..278207 FT /gene="pta" FT /locus_tag="MCAP_0229" FT CDS 277239..278207 FT /codon_start=1 FT /transl_table=4 FT /gene="pta" FT /locus_tag="MCAP_0229" FT /product="phosphate acetyltransferase" FT /EC_number="2.3.1.8" FT /note="identified by similarity to SP:P39646; match to FT protein family HMM PF01515; match to protein family HMM FT TIGR00651" FT /db_xref="GOA:Q49112" FT /db_xref="InterPro:IPR002505" FT /db_xref="UniProtKB/Swiss-Prot:Q49112" FT /protein_id="ABC01301.1" FT /translation="MYTLEEIKNQLGLKSEKKSIVFPEAESEIIQSVAKTLVDEKLGLP FT ILLFKSSKEVPSEIKNNSSIKTICLDEFDTKEFEEEFVKLRKGKATIEVAHQVMQLPNY FT IGAMLVKLNQADCMLSGLNNTTADTIRPALQIIGTKPGYNIASSIFVMSKGNENYIFTD FT CALNIKPTSEQLVEITQMAVDFAKALNVKNVEAALLSYSTNGSGKGEDVDRVHQAVEIL FT KSKEKDYVCEGEIQFDAAFDKKTRDKKFKNCSLLKQTPDIFVFPDINAGNIGYKIAQRM FT GGFEAIGPFVLGLNQPVNDLSRGATFVDVLNTAIMTLYLSY" FT gene 278221..279402 FT /gene="ackA" FT /locus_tag="MCAP_0230" FT CDS 278221..279402 FT /codon_start=1 FT /transl_table=4 FT /gene="ackA" FT /locus_tag="MCAP_0230" FT /product="acetate kinase" FT /EC_number="2.7.2.1" FT /note="identified by similarity to SP:Q9WYB1; match to FT protein family HMM PF00871; match to protein family HMM FT TIGR00016" FT /db_xref="GOA:Q49113" FT /db_xref="HSSP:1G99" FT /db_xref="InterPro:IPR004372" FT /db_xref="UniProtKB/Swiss-Prot:Q49113" FT /protein_id="ABC01230.1" FT /translation="MILVINSGSSSIKFKLFDTSKAIEPILDGLAERIGIDGFLKFEHN FT NQKYKFEDPLPDHEHAIQLILNKLLELKIISNIDEIKGVGFRVVHGGEISHSSIINEEV FT LQKIQESVKLAPLHNPAAIIAIKAVKKLMPNTSMIACFDTAFHQTMPQVNYLYSVPYKW FT YEEFGVRKYGFHGISYEYIVNKCEEILNKKKEHLNLIVCHLGNGASISCIKDGKSYDTS FT MGLTPLAGLMMGTRSGDIDVSICEYVAKQTNSDIFAITQILNKQSGLLGLSQTSADMRD FT VLEQYDRNDKKAIIAVEKYVQVVADFIVKYANYLDSIDAVVFTAGIGENADVIRDLICK FT RVKLLGLQIDQEKNESKYSDYKLISSEKSKIPVYAIRTNEEKMICLDTLNLIK" FT gene 279470..281437 FT /locus_tag="MCAP_0231" FT CDS 279470..281437 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0231" FT /product="lipoprotein, putative" FT /note="identified by match to protein family HMM PF01732" FT /db_xref="GOA:P45615" FT /db_xref="InterPro:IPR002414" FT /db_xref="UniProtKB/Swiss-Prot:P45615" FT /protein_id="ABC01290.1" FT /translation="MKRTIKYLSFLGLIPFLSITTISCVKQAKENNNKNQLISQFKQLI FT FILNSFDLDNKKLESKIIKAIEKSDFNKISNINLELTIKFLTRIKNELETKTISQLNKN FT DKLDILTKIKVHLGSLNLIELVNIVDELVNKLNQKEEIKNTHKDKIEKNKDNIEDIDDS FT KLEILESKYIPNQHNYPDYVKNFKTVSAEEIYKELYDRTFSIKFLVKLKDGGLLSNGTG FT TGWLLDYHKYSNTNKYKMFIATNLHVLADFSNSLTDEQNKEFNYYDPSGNKVIGLGLGK FT ADNVTDFSRKNNNSKSENNIANYYLNNQDFENYLKNDFWSVNKFSKGISEPKIVFGAVD FT FMKDRAIKNHYEALQKEAINYYNYKKNNNEINDDNKIAWNNFLNNKDIPIMIDFAVFEF FT DVDLDLVDYNLKSWISNAISGLDNYLDRLNKAPILPNQDKKISKYLQTTDYVSALFKKD FT KSEQNLYNAKDIYIAGYPTSQYSRSVWMQNNPIERNSSTLTSNWRSPTNDKTFAFANEV FT EEKAGTGLNFNIHDNYWHRVFATFYGYQYNINFSSLYYGASGSLAYNEFGQMIGIYNNV FT KSNVEFGDLLQSATIAPFLQSDNIKVGDNIIYAYNLIDGTDKTKYKYQKSSFRENLQKL FT YPNGFSDGLKSTKLFDDIFN" FT gene 281447..281869 FT /gene="coaD" FT /locus_tag="MCAP_0232" FT CDS 281447..281869 FT /codon_start=1 FT /transl_table=4 FT /gene="coaD" FT /locus_tag="MCAP_0232" FT /product="pantetheine-phosphate adenylyltransferase" FT /EC_number="2.7.7.3" FT /note="identified by match to protein family HMM PF01467; FT match to protein family HMM TIGR00125; match to protein FT family HMM TIGR01510" FT /db_xref="GOA:P45616" FT /db_xref="HSSP:1QJC" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/Swiss-Prot:P45616" FT /protein_id="ABC01753.1" FT /translation="MKIAIYPGSFNPFHKGHLNILKKAILLFDKVYVVVSKNVNKSLDP FT DLQSRVENIKNLIKDFSNVEIIINENKLTTTIAKELNACFIIRGLRSQADFEYEIKYYD FT GFKSLDPNIEVVYFISDYDKRSLSSTILREIEFYKK" FT gene 281962..283683 FT /gene="ptsI" FT /locus_tag="MCAP_0233" FT CDS 281962..283683 FT /codon_start=1 FT /transl_table=4 FT /gene="ptsI" FT /locus_tag="MCAP_0233" FT /product="phosphoenolpyruvate-protein phosphotransferase" FT /EC_number="2.7.3.9" FT /note="The M. capricolum phosphoenolpyruvate-protein FT phosphotransferase (ptsI) was cloned, expressed and FT characterized in Zhu,P.P., Reizer,J. and Peterkofsky,A. FT 1994.Unique dicistronic operon (ptsI-crr) in Mycoplasma FT capricolum encoding enzyme I and the glucose-specific FT enzyme IIA of the phosphoenolpyruvate:sugar FT phosphotransferase system: cloning, sequencing, promoter FT analysis, and protein characterization. Protein Sci. 3 FT (11), 2115-2128; identified by similarity to SP:P45617; FT match to protein family HMM PF00391; match to protein FT family HMM PF02896; match to protein family HMM PF05524; FT match to protein family HMM TIGR01417" FT /db_xref="GOA:P45617" FT /db_xref="HSSP:1EZC" FT /db_xref="InterPro:IPR015813" FT /db_xref="UniProtKB/Swiss-Prot:P45617" FT /protein_id="ABC01377.1" FT /translation="MSKQIKGIAASEGISLARALVIKETKLDIQKQLISDVDQEIIKLE FT QAIEKSIADLKKIQQITLKKLGEEKAAIFDAHQDIANDPAIKEEVVELIKKEKVNAEYA FT LFTVSNNYFEMFSQLEDPYFKERSADIKDVSLRIISHILGLEIHDLSTIDKEVIIISDD FT LTPSQTAQLDKKFVKGFLTNVGGRTSHAAIMARSLEIPAILGLKNITELVKTDDLIALD FT GSSGIVELDLNDDDIKNYQTKVQQYIELKEQLKKFKDEPSLTKDKIKKLIEANIGSTND FT VQSVLDSGAEGIGLFRTEFLYMDNDHFPTEEEQFEAYKKVVSQIKHLVVFRTLDIGGDK FT KLSYFKFDEEMNPFLGYRAIRFTLDRKDIFKDQIRALLRASAFGKLGIMFPMIATIDEF FT KQAKTFVEECKIELDKEGIKYDNQVQIGMMVEIPSAAILADQFAKYADFFSIGTNDLIQ FT YSFASDRMNQNVSYLYQPLNPSLLRLIQLTISGAHKHNKWVGMCGEMAGDSKALPILLG FT LDLDAFSMSATSVLKARSLMSKIEFSKAKILANKVLECETNEQVNKLVEDFLNNLD" FT gene 283765..284229 FT /gene="crr" FT /locus_tag="MCAP_0234" FT CDS 283765..284229 FT /codon_start=1 FT /transl_table=4 FT /gene="crr" FT /locus_tag="MCAP_0234" FT /product="PTS system, glucose-specific IIA component" FT /EC_number="2.7.1.69" FT /note="This M. capricolum protein was characterized in: FT Zhu,P.P., Reizer,J. and Peterkofsky,A.. 1994.Unique FT dicistronic operon (ptsI-crr) in Mycoplasma capricolum FT encoding enzyme I and the glucose-specific enzyme IIA of FT the phosphoenolpyruvate:sugar phosphotransferase system: FT cloning, sequencing, promoter analysis, and protein FT characterization. Protein Sci. 3 (11), 2115-2128 (1994); FT identified by similarity to SP:P45618; match to protein FT family HMM PF00358; match to protein family HMM TIGR00830" FT /db_xref="GOA:P45618" FT /db_xref="InterPro:IPR001127" FT /db_xref="PDB:2GPR" FT /db_xref="UniProtKB/Swiss-Prot:P45618" FT /protein_id="ABC01309.1" FT /translation="MWFFNKNLKVLAPCDGTIITLDEVEDEVFKERMLGDGFAINPKSN FT DFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNGFESFVTQDQEVNAG FT DKLVTVDLKSVAKKVPSIKSPIIFTNNGGKTLEIVKMGEVKQGDVVAILK" FT gene 284721..285347 FT /locus_tag="MCAP_0235" FT CDS 284721..285347 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0235" FT /product="dihydroxyacetone kinase family protein" FT /EC_number="2.7.1.-" FT /note="In E. coli dihydroxyacetone kinase is encoded by two FT proteins. MCAP_0235 corresponds to the C-=terminal part. M. FT capricolum likely uses dihydroxyacetone kinase under FT anaerobic conditions along with triosephosphate isomerase FT to catalyzes the transformation of dihydroxyacetone to FT glyceraldehyde-3-phosphate. This then feeds into FT glycolysis; identified by similarity to SP:P76014; match to FT protein family HMM PF02734; match to protein family HMM FT TIGR02365" FT /db_xref="GOA:P45620" FT /db_xref="InterPro:IPR012737" FT /db_xref="UniProtKB/Swiss-Prot:P45620" FT /protein_id="ABC01772.1" FT /translation="MSLNVDNVKEVLVKIAEVVNENKEELSQLDAAIGDGDHGHNMSRG FT FLKVVEELKNNSYDDIGSIFKKVGMVLVSNVGGASGPLYGTAFLKAATFVNNKKEIDIN FT DFSVCLQQAVDGIKIRGKANVGDKTMLDVLQPVSDLIKDLINQKYLAKEILNKAVELAF FT QKVEFTKEIVAKKGRASYLGQRSIGYKDPGAYSSYLILKCISENI" FT gene 285355..285744 FT /locus_tag="MCAP_0236" FT CDS 285355..285744 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0236" FT /product="conserved hypothetical protein" FT /note="identified by match to protein family HMM PF03610; FT match to protein family HMM TIGR02364" FT /db_xref="GOA:Q2SSP0" FT /db_xref="InterPro:IPR012844" FT /db_xref="UniProtKB/TrEMBL:Q2SSP0" FT /protein_id="ABC01788.1" FT /translation="MVGIVVISHSSKIAQGAVELAKQMANNVKIIPAGGTKDNNIGTDI FT DLVLKAIYQAFDQNDGAIILFDLGSALMNAQMAVELLEPEIQQKVEIIDAALVEGTILA FT AINSSMNKSIKEIKQELINLKLNKI" FT gene complement(285801..286427) FT /gene="rpsD" FT /locus_tag="MCAP_0237" FT CDS complement(285801..286427) FT /codon_start=1 FT /transl_table=4 FT /gene="rpsD" FT /locus_tag="MCAP_0237" FT /product="30S ribosomal protein S4" FT /note="identified by similarity to SP:P21466; match to FT protein family HMM PF00163; match to protein family HMM FT PF01479; match to protein family HMM TIGR01017" FT /db_xref="GOA:Q2SSN9" FT /db_xref="InterPro:IPR002942" FT /db_xref="UniProtKB/Swiss-Prot:Q2SSN9" FT /protein_id="ABC01806.1" FT /translation="MSRFIGSTFKKSRRFGFSILETGKEFSKGKKRITTPGQHGKERAK FT VKVSEYGQQLQEKQKVKFMYGLSERQFRNTFAKAKKMQGILGTNFLVLLESRLDNIVYR FT LGFSATRQGARQLVNHGHILVNGKKVDIPSYLLSVGDLVEVKASMKKNEKVLEALQNNE FT ATLEFVKVNKNEVKGEFVRLPERNELNSEISESLIVEWYNRLIKK" FT gene 286682..288469 FT /locus_tag="MCAP_0238" FT CDS 286682..288469 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0238" FT /product="membrane protein, putative" FT /note="MCAP_0238 has 1 membrane spanning region, FT N-terminal" FT /db_xref="UniProtKB/TrEMBL:Q2SSN8" FT /protein_id="ABC01750.1" FT /translation="MFFESMIIISKLNEIKLVNLIFLIIFILAFFCSLFTIFKLYIYRN FT TLKNLHFTFLNIEKILKHPLANRLIRMNFIVNNSNNINLKKALEIWKFKYNEIYDEQLD FT ILINQTREHFALNSYSKKILFRVLSIKNFYRTRQLYKTSKNVYQKVNQIYFETQRVTKV FT EFLLRDYRIILQNHINDLSDIVLKEQENNELNINKKIISNYQETFFKKMIVCEYYIKVG FT NFKEAYNKLNLLSNNVVEYIKFLDDHYKITKFFEFNGVLDLKLQEIKNKVQLDTNQENN FT QLISSQIYLLENQFLEKKQEIEKLLFNAKTQQAFLIVESLIKNIQNLDVILEYGEQVLA FT LFETNVKKIRTILLAFNTEIIKTEDLINFNSNLNNDINDIKIEFEEIKNNFNLTRTQIN FT NKYEMLRSNFIQLDSLLTDSVNYISIVLLELEKYYTKLIDIKTLLKTKIVVLRDLETKY FT DDIKTLLLTSEAIMKKYEDLIDWTHYKEIIDNKFLIINFINKNLELESNNFLNDYDSLL FT VLNTQLDNQLEQVEQLHLSIQQVVVINKMAQEIIIYITKHLTDSSNSNVFLEILNKYNE FT KDYKKVINLGIHLIRKNQL" FT gene 288478..289665 FT /gene="thiI" FT /locus_tag="MCAP_0239" FT CDS 288478..289665 FT /codon_start=1 FT /transl_table=4 FT /gene="thiI" FT /locus_tag="MCAP_0239" FT /product="thiamine biosynthesis protein ThiI" FT /note="The characterized E. coli ThiI has a COOH terminal FT rhodanese domain (3-mercaptopyruvate sulfotransferase) not FT found in the mycpolasma ThiI proteins; identified by FT similarity to SP:Q8FKB7; match to protein family HMM FT PF02568; match to protein family HMM PF02926; match to FT protein family HMM TIGR00342" FT /db_xref="GOA:Q2SSN7" FT /db_xref="InterPro:IPR004114" FT /db_xref="UniProtKB/TrEMBL:Q2SSN7" FT /protein_id="ABC01610.1" FT /translation="MKYILIRYGELTLKGNNRFQFIDKLISNIKFKLKQFNKEDIKFIK FT DHNSLTLEIKDELEADVLKQLKTVFGIYSISIINYVNKDLDQIKKAVLEIAKNSKAKTF FT KLEVSRKDKSFNYTSIELKHILATEILKSTNHLIVDVHNPELVIEIVVKKDHVDVFDNR FT IDGLKGLPVGISDKGLCLLSGGIDSPVSAFLTLKRGMQVDFIHFMTPPHTSHQALDKVF FT SLARQLAKYNISNFKLHICNFNLLLQELQHLVDPSYKITIMRRMFLRIANIIAKNNNNK FT AIITGESLGQVASQTIQSINVINNVSDLPILRPVITYDKEEIIKIAKFIDTYQTSILPF FT DDVCSMFVPKDPIIKPKLNIATKLEENIFWNELLEETIKNNIKIFVYKNGEFVEE" FT gene 289797..291767 FT /locus_tag="MCAP_0240" FT CDS 289797..291767 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0240" FT /product="membrane protein, putative" FT /note="MCAP_0240 has 2 membrane spanning regions and a FT likely C-terminal peptidase domain; identified by match to FT protein family HMM PF03572" FT /db_xref="GOA:Q2SSN6" FT /db_xref="InterPro:IPR005151" FT /db_xref="UniProtKB/TrEMBL:Q2SSN6" FT /protein_id="ABC01466.1" FT /translation="MKLVTKLSAISLGAFSIFAPIAVINNLTTKNNLLITKRFLSSSNS FT NSNFELKAYDYVNLIDNKYLDAKINLHNHNGIAYIGVKEFLKALDGLISFSKIRVKPTH FT NSTFFKEKEITYKFNKDKVTLNSVTKYSNNSQNNTNYQLEIDSKNNTITVSDNDFFTDI FT FAFYRRGEEDLNIDFLDTKILNKNKHIVFDLKKYGIDVLNDKKDLYLPLVLINQLFLNQ FT SNVQLYFNGERINLFAYSKTLRRVDFLKQLKQSYFNNVNTISPGLKDFQHKYLGFLFDH FT YYGIKLDKNASYKDLFKKYEKYIKADNTTHYLTSRYLIEQLDDLHSSYLLTGYYNKNLD FT TINRAVLNTSTPRSDKYKDIARRLSFYYNKELNYKNVYTPDKKTSIISFKNFEIDSAKK FT IEQSLIEAKKNNVKNIVLDVSFNSGGLLGTAYEIMGFLTDKPFKSYSYNPLTKEQKVET FT IKSKFKKYDFNYYVLTSPFSFSAGNIFPQLVKDNNVAKVIGFKTAGGASAISQAILPTG FT DIVQLSSNHVLTNKNHQSLEYGVTPDIKFNFNPFNETKKLFDSSFIQDVVNKDTSKLKN FT PNFSQTSFVEPNLVHELLKKPTSLQLNKDQKQENEIKNNNTLFSSLKSELRTKEALFIL FT GVIGLLASITTTFIIIKKIKK" FT gene 291884..293554 FT /locus_tag="MCAP_0241" FT CDS 291884..293554 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0241" FT /product="membrane protein, putative" FT /note="MCAP_0241 has one membrane spanning region" FT /db_xref="UniProtKB/TrEMBL:Q2SSN5" FT /protein_id="ABC01386.1" FT /translation="MKKALKLLPLYRLEKINNIKQISKKLDFKKVLKIVSTIGVVLFST FT TFLAALNLNNFRFSKRVNLEEQLEQYKLELNNKISSLQSIHNKQISEIKNFKQNQNLLK FT TISLKELETKINNLENQKQKAILDINQNNQELIANQNRLTFLTNLKNDYSKKIVELERT FT KNNNLKETEQINLEINKLQIEINLLNDQILNNNQTLVNLSNKNNDLKILTTDFEKEITN FT NNSQIRNTKQSISVLESQHSNLLNEIKILNNQLNQIKNSSNLKLQEINNLKKQIENNNK FT KLEKLNNKTLEITNTLTKLGNDNQNNNDLIDKLTKVLQNNQNSIKEITNNNSILTNNLK FT KVTQKNQQILSEISKLSKLIEIKESELNNKTKELETKKNSLQALISTNSDNDNKLKLLI FT NTNSENQNQITSLVSQTKTLDNLIDIAKQKREQLTQRLRELASEENDLDKQIKKSTLEK FT QNLESEINNLNEKIKTLKIENEQISDQVNNYELESQSLIESVKENGIKFKDLEAQIIRI FT EEKISKADEQIKQLEEKKEPLEKRQDNLRWWVNILTIYQ" FT gene 293564..295852 FT /locus_tag="MCAP_0242" FT CDS 293564..295852 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0242" FT /product="lipoprotein, putative" FT /note="This ORF encodes tandem sequences containing the FT lppQ-Variable-Repeat-Peptide motif. Strong coiled-coil FT prediction in region 1-525 of this ORF. QVRP motifs extend FT from that region to the C-terminus; identified by match to FT protein family HMM TIGR02167" FT /db_xref="InterPro:IPR005046" FT /db_xref="UniProtKB/TrEMBL:Q2SSN4" FT /protein_id="ABC01218.1" FT /translation="MKKLLYILSTLAISILSTTTLIACSKKNLDQPKQLSKLEQLQSEI FT SSLETNVNKYSEQINKTEIEKQQLLEEINKIQKEINSLKEQETSKIEELNLLTNKKNTI FT NKQIENLNSQINSIDQISKEDQEKISLLTKQIKEVKQNLTNATTQKNINIKQIKNLELQ FT VKELKEKTNRIEKEILKNKSKKEELIKLKNESNKEISKLKNILNDLTNNKNNLNKQKSD FT FETKIQLKINEFNKNDKDIPGLKRQLEDLIIHINNLEKEHQKNITIINHIKKSNQKNEN FT ILKEIEENKTKLESQLTDLNNKKDELESQINDKQKEFIFKNKETKINQDKLNEINSEIQ FT KVDSSTSNINLKYEKELKKSKELEEQIKKAEQGIKLQEKELEKLIFDKDQKQKQADGLK FT VENDSAQTQIDEWIKANTSLKNKLDEIIQKNKLLNEQKEKLDADISTYFQKKKDLEDKR FT YLLINQISNLKKQIEEENLKIRKREEQLEELSNKYLEKQNQIRDLKEENKRLESSINEL FT NSRYEYLKKKTVEAEYDGNKCIKIGFFYNNDIEEYQIQTFKKSTNEVPDHIPAFLRNLS FT YAFKNNQNQIIKNLDKWNLDFVKNIEGIFLESYINMDLNNWKTSNIKNMKKAFYGSSFC FT CGDISKWDTSEVTDMSEMFSNVRHTIKLDLLTKLTSKTLYHDPNRNQDSYKIKWTAWDV FT SKVKTMKNMFEGSWFSGSLESWDVSGIIDEYDFWPHYIKLSWFAKWKWPKNTKGRDPYF FT WENISPIIL" FT gene 296087..298150 FT /locus_tag="MCAP_0243" FT CDS 296087..298150 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0243" FT /product="regulatory protein PfoR" FT /note="MCAP_0243 has 9 transmembrane regions. The FT Clostridium perfringens PfoR protein was shown to regulate FT the downstream bperfringolysin O gene. The deduced amino FT acid sequence of the C. perfringens pfoR possesses several FT motifs that are characteristic of DNA-binding proteins. FT When a region coding for a helix-turn-helix, one of the FT most important motifs of DNA-binding proteins, was deleted FT within pfoR, stimulation was completely abolished; FT identified by similarity to PIR:A43577" FT /db_xref="UniProtKB/TrEMBL:Q2SSN3" FT /protein_id="ABC01171.1" FT /translation="MLVLVFFTIFSYYVPKGKRAMSGLSGAVCATFLIEVFNFWVLGRI FT PVIGDFTKIIGSVAGTLAAPACTILVIILMGGNPLFAILCGTAVFAVGLSVDVDGISKS FT IARTLVNTSNIEGQKLLSDDNSIRAIAEWVKGNDLGTELSKTFESVKSNLIITDQKDVL FT KTIFNKEYMPTFAMNLRTTVGAFNILAGLVAGYTMYWALVLLQKYAPDGLDLIIALLVI FT APSTALIAKFGANVVAPLLKGIGSSIEVAINLSPIPMAIVVGGFLTVVGTSPLSSMALA FT VGLGLQGSAMAVGSVSAMGSSFMNGVLFARMKYGEKKQTIACSIEPLSQADIISMNPVS FT VYITNFIGAAATGILVIIYGQNILNIEQTVFMINSNSYEVVRGFTQQGVGLATPFGPVA FT MFGQGGGQTAEVLTKTSNQYATWQLNMHLAILLVLTAILNVGAGLLGGYMFRHSRRTTY FT FEIYNLPLPLKHQYLLEEIELFQDNKRRFAWQWQTIIFFNKIKQTIKVKSIIYIKTFVD FT CFNKFLVEKEQSIKTKKEELLHISSSKKEFKNNFKKEKKQIISNLKNKWVNNYKNEIQK FT AKQHYKDLLQHYAKQLESLKKLVIKNKKMKQSVSEQDKVKYQSLKAEFKKTQKQKHMLA FT KSELKGSVGKDRLTKLHNKKMQFLQDKIDFYEQVSKFYPQKKFVIKTSLKSH" FT gene complement(298176..301091) FT /locus_tag="MCAP_0244" FT CDS complement(298176..301091) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0244" FT /product="cation-transporting ATPase, E1-E2 family" FT /EC_number="3.6.3.-" FT /note="identified by match to protein family HMM PF00122; FT match to protein family HMM PF00690; match to protein FT family HMM PF00702; match to protein family HMM TIGR01494" FT /db_xref="GOA:Q2SSN2" FT /db_xref="InterPro:IPR008250" FT /db_xref="UniProtKB/TrEMBL:Q2SSN2" FT /protein_id="ABC01277.1" FT /translation="MDNLEQKTIDEVQKILNTNIKTGLTNQKASELLIKNGKNELAKNK FT QTPAILIFLKSLIQPIQIVLFIAAIISVIAPLISSKHFEVKFDDFIDFIVIMGVIILDA FT TLETIQQIKARKSVDALKSLSKPSAIVLRDSIVKEIDASELVVGDIVILEAGKYVPADL FT RLLESSDCMVEESILTGESLPVEKNIKPIKQTNILADKKNICFMSTFITSGRAIGVVVK FT TGIDTEIGKISKTISENEEQVTPLEKKMNKFSYLISILAIIISFFVFISFIISSNKNNW FT ATYLMISITLAIGVIPESLSAIVSIALSFATKRMAKNNVIVKKLESIETLGSVNVICTD FT KTGTLTQNKMAIKKLIWNNQIILSDEFIDKTENELAKTLFLKSLVLPNDSITEKDERIG FT DPTELALVDFAEQLKIDEQKFRRKYPRIFEIPFDSERKLMSTVNILEDDKKFIFTKGAL FT DQILKKCSKIFINNKIVKLTNTYKKEIKKLSTSLSDDALRVLGFGFKQILNDEQQTEED FT LIFIGAVGMIDPIRKEALIAIQQAKAAGIKTIMITGDHAITALAIAKDLDLAYTQYEVM FT SSEKLEQYTDQELESAIDNIKIFARVNPEHKVRIVQALQKKGYIVSMTGDGVNDAPSLA FT IADIGVAMGVSGTDVAKQAADVILTNDDLNTMMTGVLEGRNVYQKIRRAIVLLLGFNFA FT NVISIVIISLLLKISPLNATNILFVNLVVDSCLAFGIGMSPIDRTLLKNKPQLRNSNIL FT SEIIWPLFKVGLSLSTAQIISFIIGMSVTNLDYYNSLENYNKANNWFLFIQQNSNTLLT FT NLDDMHDFIVFGRTSMFITSIISPILFTHLIKLTNWKETKKIDWTISKPLICACVIALL FT ISIIAFSIPVLNSKVFGLAGINDTKQYINWNSKNMWILFSSLGCGLIPFIFILITDAIE FT FYSYHLSNRTWEKRQKLIKQIIDQEQKEQEIKKEDKKNQAI" FT gene complement(301100..301690) FT /locus_tag="MCAP_0245" FT CDS complement(301100..301690) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0245" FT /product="GTP-binding conserved hypothetical protein" FT /note="identified by match to protein family HMM TIGR00231; FT match to protein family HMM TIGR00650" FT /db_xref="GOA:Q2SSN1" FT /db_xref="InterPro:IPR005225" FT /db_xref="UniProtKB/Swiss-Prot:Q2SSN1" FT /protein_id="ABC01543.1" FT /translation="MIKQASFITSAANKSNWINDDVSEICLIGRSNVGKSSFINSLTNN FT NKLAKISNTPGKTRLLNFFEINKGEYRLVDAPGYGYAKVDDSIKIQFAKMMEEYFINRK FT NLKGVFLLLDLRHKPSNDDIMMYQFLKHYNIPVVIIGTKLDKLKKNEYIKNEKMIKEAI FT NFYQEDDFIKISNLNKTNIIKCYELINKLLGSK" FT gene complement(301684..302244) FT /locus_tag="MCAP_0246" FT CDS complement(301684..302244) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0246" FT /product="membrane protein, putative" FT /note="MCAP_0246 has 3 membrane spanning regions" FT /db_xref="UniProtKB/TrEMBL:Q2SSN0" FT /protein_id="ABC01651.1" FT /translation="MKVDYTASIFLSFTVFILTLILFLINFYWLYKVKKIYNQVKDQNL FT KFNFNENRYSNIKLINIFSCIISLCVLLIFTILKFKNLLNKSFLYEWIIIGSIICEFIM FT FMILAYLISNLIFVKTEKYLVIVNRLIDLRSVFKIEISKRFIKVIYINAFHTKSRFWFY FT NTNNLDQWFETHFKELIRKDKQW" FT gene complement(302246..302824) FT /locus_tag="MCAP_0247" FT CDS complement(302246..302824) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0247" FT /product="membrane protein, putative" FT /note="MCAP_0247 has 1 membrane spanning region, FT N-terminal" FT /db_xref="UniProtKB/TrEMBL:Q2SSM9" FT /protein_id="ABC01607.1" FT /translation="MSSKIIAIIIFTVFYLVFLLITFILTYFYQIKNKDFIDFNKKYLK FT EWNKYKFDNKNSTLNQIDFKYQLPENEIGLFQKELLISGINEKTKDYKDYFDDDYLILK FT KSLSLYQTTSYHFKKTKLYLTNLHLVIDDNNQFYKYKISEIKSCSICVIRDKSILQKGC FT VLQVNDQNLTIIGDVFLLVLSIKKLKREF" FT gene complement(302827..303516) FT /locus_tag="MCAP_0248" FT CDS complement(302827..303516) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0248" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q2SSM8" FT /protein_id="ABC01682.1" FT /translation="MNKKEIFDTDFFESGLAYILTNLDFIQEELEQENLQTNLLKKLIS FT DFEDIQEYETWDALTNNLIQAENQILEQILKIKDSTKFNLLNSYFLAKNLAIYLKSNSF FT LIEQLEKLKSNSFDDLSEDKKEEFFNNLKQEILKNNSELYKQNQKLFNEIFEKKVEFKK FT IYQLLIKENEFEDFNYANELLFNMLNNNSKFNDKQDLLKLEVLNNAQSLIDFLNFYESS FT LFDNEEE" FT gene 303598..304293 FT /locus_tag="MCAP_0249" FT CDS 303598..304293 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0249" FT /product="hypothetical protein" FT /note="identified by Glimmer2; putative" FT /db_xref="UniProtKB/TrEMBL:Q2SSM7" FT /protein_id="ABC01123.1" FT /translation="MIEIYKLRELKTKDLDSYTHINPWWNKKVNKLIFKIKNFITHFNL FT NPNDYIDFNSIEQVKLDKFFRSINNYLHFFNPKLNHIITNKKLLVKFQKQIKNYIKLIG FT MCFGILIMIDFYNQLNEKEVLNKKELVLKISNKTLNDKFERFTTEVLKLIPNEYKTNLK FT DLYNEKTLNNQLFNSSEFIRWTNKYATRLFKTKKIKEIDYLKIVYYCILENEFNRSVNL FT LIREFINKL" FT gene complement(304294..305016) FT /locus_tag="MCAP_0250" FT CDS complement(304294..305016) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0250" FT /product="Oxidoreductase, short chain FT dehydrogenase/reductase family" FT /note="identified by match to protein family HMM PF00106" FT /db_xref="GOA:Q2SSM6" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q2SSM6" FT /protein_id="ABC01384.1" FT /translation="MKPLVVITGASSGIGLACAKYFSNQGHPLLIVARRKEILDNLNLK FT NTITARVDVTNFDELNSAIKQAEKIYGPVDLMINNAGIMILEKYKDQNIEDKYKMMDVN FT VKGVINGMDAVLPSMLKQNRGTIVNISSVAARYTYTDHSVYCGSKYAVNAITEQLRKEL FT SNTNIRFTLIEPAIVNTNLLDSTKNQQIHNDYQKSIDEINGGLKPEQIAQTIYYIYSLP FT QDVMIPELMISHTNESEV" FT gene complement(305075..305548) FT /gene="greA" FT /locus_tag="MCAP_0251" FT CDS complement(305075..305548) FT /codon_start=1 FT /transl_table=4 FT /gene="greA" FT /locus_tag="MCAP_0251" FT /product="transcription elongation factor GreA" FT /note="identified by similarity to SP:P27640; match to FT protein family HMM PF01272; match to protein family HMM FT PF03449; match to protein family HMM TIGR01462" FT /db_xref="GOA:Q2SSM5" FT /db_xref="InterPro:IPR018151" FT /db_xref="UniProtKB/Swiss-Prot:Q2SSM5" FT /protein_id="ABC01743.1" FT /translation="MSKEIILTQEGLEELKAELKNLLEVTRPKVIEELVEARNQGDLSE FT NADYDAARNRQAEVEARIKEVETLINRAKVIDNSKTHSTGEVKIGSTVEFLSSLDHKTK FT EIKIVGAIEADPFSRLISNESPIAKAILGKKIGDTVEIKDILKPYKITIKSIK" FT gene complement(305640..307394) FT /gene="uvrC" FT /locus_tag="MCAP_0252" FT CDS complement(305640..307394) FT /codon_start=1 FT /transl_table=4 FT /gene="uvrC" FT /locus_tag="MCAP_0252" FT /product="excinuclease ABC, C subunit" FT /note="identified by similarity to SP:P14951; match to FT protein family HMM PF01541; match to protein family HMM FT PF02151; match to protein family HMM TIGR00194" FT /db_xref="GOA:Q2SSM4" FT /db_xref="InterPro:IPR000305" FT /db_xref="UniProtKB/Swiss-Prot:Q2SSM4" FT /protein_id="ABC01582.1" FT /translation="MNLKEQVDLLTNKPGCYLFLNKDNEVIYVGKAKNLKKRVSTYFNK FT AYNIKTTRLIREITHLKYFIVDNEKESLLLEKNLIKKYRPKYNVLLNDDKTYPYIIITN FT QKDPMYKYVRKYEKKALRNYGPLPIGSNARSILLTLQRLFPLRMCKGDLKKPCLYYHLN FT QCSGACFKTVDSSYYEYQIKQVDKFFKGEINQVKQTLVKQMQKASDNLQFEQAKRIKDQ FT ITSLDFITAKQNVDIVTNKNIDVVNYEINEEKICFVMLFYRLGQLTYKDEYIQNYEGQD FT LDELLNSYLQQIYQKNLYPDVLLIPNEIDLLDLDENLLEFSSYSFNNQDDIFIKLAKQN FT AVDSLNKSILSNNVNSGDELEILDQLQQISNINKYPKRIEIFDISNIYNQFITGACIVY FT INAKPVRNEFRKYNIDSQYTSDYARMKFMLEKRFLKRIKEKEQLPDLIIVDGGIIQIHA FT AKEVLNKLNLKINVIGLSKDNNHKTRYLIDIFEQTIDIKNFKKLYNFLTSLQIRVDEYA FT KSGFRKKYHNQLNDQILLIKGVGKKTNLKLYKHFKTIDNIKNASFDELNKIINNKKITN FT LIISNFKK" FT gene complement(307403..308479) FT /locus_tag="MCAP_0253" FT CDS complement(307403..308479) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0253" FT /product="membrane protein, putative" FT /note="MCAP_0253 has 6 membrane spanning regions" FT /db_xref="UniProtKB/TrEMBL:Q2SSM3" FT /protein_id="ABC01522.1" FT /translation="MKKTRTNQNFDSKVFFVSKISNFKNNLIAIIIFIFLFISMFRLTL FT IGQFFDDVFFSFLFGWFKYLIYFLLFVFNFCLFKKLVVAIKLKAFIIIGFFTIVLASFL FT TLNFIIWQFINEQTISNNYKIYALWQNDILVQIIKFYNYHWYTNSVFTIDFKNWINYFF FT NKDTYFNLFLFGGFISYLICGIFWYFTLPASYLTLIVLLIISLVWLVTDDPFYLLKNKT FT KKISFKNNNTSDNQIDTPKVVKHYNVTGLEIFKNKLDDNLELPIYKNKEKNLLTSLENI FT LLDTNFVDKMLFLKLEKTDFKKEQEIINDSTKDLTNQFKNHHKEGILTDSQISPFKRNK FT PAKKISDDEFFNELFEQK" FT gene complement(308544..310161) FT /pseudo FT /locus_tag="MCAP_0254" FT /note="MCAP_0254 has 3 membrane spanning regions. MCAP_0254 FT contains a frameshift after amino acid 134 compared to an FT orthologous ORF in M. mycoides subsp. mycoides SC PG1 FT [MSC_299].; membrane protein, putative, authentic FT frameshift; this gene contains a frame shift which is not FT the result of sequencing error" FT gene complement(310275..312026) FT /locus_tag="MCAP_0255" FT CDS complement(310275..312026) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0255" FT /product="conserved hypothetical protein" FT /note="Contains an ATP-binding domain at the N-terminal end FT of the protein. Possibly part of a superfamily of FT beta-lactmases; identified by match to protein family HMM FT PF00753" FT /db_xref="GOA:Q2SSM2" FT /db_xref="InterPro:IPR001279" FT /db_xref="UniProtKB/TrEMBL:Q2SSM2" FT /protein_id="ABC01088.1" FT /translation="MPDIKFTALGGQDERGKNLYVLEIDNDFFILDAGVKYPEKDILGI FT DTVIPKFDYIKQNKKKIKGIFLTNPSAYNMGAIPYLLKEIEAPIYCNEITELIARIKFQ FT KLRVKNKDHILKVVHDKDILKIGNTKVEIFRTTSSSPQSFGYVFHTELGSIVYAGDYII FT DGKEQSYFSTDYTHLSQIAKRGVLALISDAEFASRKDFTVPNHKIDKYILAPFKEKNTK FT IIVAIFEEDIHKLGQICMAAKENNRKIAVYGRTMDAVLRSNLIHENLVIKPEDLISIQE FT YVNSNNGVLIISGTGDDLYSKLAKIATSNDSLVEFTEKDLIILTNTPVAGVEKRHAQIL FT DELARTDARLLALSDKNIWSMRASYEDIKMLTSILNPKYFIPIKALYKDFLNAEKAAIE FT AGVNNQNIGIIDNGEILKLSKNHLAISEHGAEHGNVYVDGSGIGDVGSIVLNERKQLAT FT DGVIIVGATIDSRNKELISLIDTQMRGVLYIQEDNPIFKILQREITNLIIEGQALYKKD FT PKKYDLNEIKKDITSRIKQLIKQESGKTPIVLVIINESDGKGYIPKNNKKRFNNPGKNN FT KSKRDKS" FT gene complement(312145..312864) FT /locus_tag="MCAP_0256" FT CDS complement(312145..312864) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0256" FT /product="Oxidoreductase, short chain FT dehydrogenase/reductase family" FT /note="identified by match to protein family HMM PF00106" FT /db_xref="GOA:Q2SSM1" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q2SSM1" FT /protein_id="ABC01195.1" FT /translation="MKPLVVITGASSGIGLACAKYFSKKGFPLLILARRKEILDSLNLP FT NTLTAKVDVRNFEELNQAVKKAEQVYGPVNLLINNAGIMPMDQYVDQSLEDKYNTLDVN FT VKGVINGMDAVLPSMLKQNHGTIVNISSVAGRYTYDDHSIYNGSKFAVNAITEQVRREL FT SDTNIRFSLIEPAIVDTNLLSTTKNQKILNSYISRKNSLNGGLKPEQLAEVIYYIYSLP FT QDVVIPELMISHTNQKV" FT gene complement(312876..313673) FT /locus_tag="MCAP_0257" FT CDS complement(312876..313673) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0257" FT /product="inorganic polyphosphate/ATP-NAD kinase, putative" FT /EC_number="2.7.1.23" FT /note="identified by match to protein family HMM PF01513" FT /db_xref="GOA:Q2SSM0" FT /db_xref="InterPro:IPR017438" FT /db_xref="UniProtKB/TrEMBL:Q2SSM0" FT /protein_id="ABC01811.1" FT /translation="MKYSFITNKYEESGDILNQLLDILKDANFTKDEKEPDICFVIGGD FT GTFLYAVHKYQSILDKLIFIPIKFGGIGFYTNKNRVDDLKNVDLYKIIKDPNITELGLI FT EVNYDNQKVYAINEIKITNQVRPLTLDIYINNEFLEQFKGTGLVFSTPSGSTGFIKSAN FT GAIIYPVVSLFEMQELMPISTNKFRTLNAPIIFSDKEHITLKLKDLTNVTLSADTYEYA FT FKNKEFLIKLSRKKIKLLNLNKDKFNKIQILRDIFVLNDKTKN" FT gene complement(313797..316415) FT /gene="valS" FT /locus_tag="MCAP_0258" FT CDS complement(313797..316415) FT /codon_start=1 FT /transl_table=4 FT /gene="valS" FT /locus_tag="MCAP_0258" FT /product="valyl-tRNA synthetase" FT /EC_number="6.1.1.9" FT /note="identified by similarity to SP:P36420; match to FT protein family HMM PF00133; match to protein family HMM FT TIGR00422" FT /db_xref="GOA:Q2SSL9" FT /db_xref="InterPro:IPR019499" FT /db_xref="UniProtKB/TrEMBL:Q2SSL9" FT /protein_id="ABC01303.1" FT /translation="MKKQLNPKYNHILVEKTKYQYWLDKKLFKANPNSKKPKFSIILPP FT PNVTGKLHIGHAWDTSLQDAIIRFKKLTGYDTLFLPGMDHSGISTQVKVEQKLKKQGID FT KNKLGREKFLLEAWKWKEEYASIIREQWAKLGLSLDYSTEKFTLDEDINQIVKEIFVKF FT YNDKIIYKDKQIVNWDPEQKTAISNVEVIYKETQSKMYYFKYMLENSDKYLIVATTRPE FT TMFADQCLVVNPNDSRYQEYINKKVINPVNNQVIPIISDEYVDIEFGTGVMKCTPAHDL FT NDYHLAIKHNLKMPICLNTDGSVNQLGGKYQGLDRFVARKEIIKDAIKEDLFVKEEDII FT NQVGFSERSNAIVEPYLSDQWFVKMDKFKNMVIDLQNSDNKINFFPNRFSDVLNRWMTN FT AHDWCISRQLWWGHQIPCWYHKKTNEMYVGINPPSDIENWTQDQDVLDTWFSSGLWAFS FT TLLNNKDLESEYFKNYFPTSVLVTGYDIIFFWVARMIFQTLEYTKQIPFKDVLIHGLVR FT DELNRKMSKSLGNGIDPMDVINNNGCDSLRLFLLTNSTPGQDIRYSNEKILASWNFINK FT LWNASRYVFLNLDDHFEFDPNFYKTDLEITNQWILTQLSKTQAYVYEKMNKYEFSLAGN FT HLWDFVWNKYCSWYIEFSKVNLSNDKFNYQTKQTLFYVLKEILIMLHPLIPFVSEEIYL FT NMMLKESILLEQWTNLNSNYDTSFIDDVIKMITSIREFRNTKNIKNNICLLANISNTND FT KHSYIFEKHFLQINSFLKNFCNTKLDNSIKISNKTSLSIDEYFIEISNDSFTNKDELIK FT ELEAKQIQLTNEILRSQKILNNSEFIKKAKIEKIEQEKSKYQTYKEQLEAINKKINDLK FT A" FT gene complement(316500..317126) FT /locus_tag="MCAP_0259" FT CDS complement(316500..317126) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0259" FT /product="conserved hypothetical protein" FT /note="This protein has a thiamin pyrophosphokinase, FT catalytic domain (EC# 2.7.6.2); identified by match to FT protein family HMM PF04263; match to protein family HMM FT TIGR01378" FT /db_xref="GOA:Q2SSL8" FT /db_xref="InterPro:IPR007371" FT /db_xref="UniProtKB/TrEMBL:Q2SSL8" FT /protein_id="ABC01623.1" FT /translation="MNYKTILIVTAKTNLNLEPFNNDSTYIIGVERGCLDLISRNMKID FT YAIGDFDKVTDQELELIKSKIKNVEIWSSEKDYFDGELAILKGLEASKDAKIIFIANAT FT KRYDKNYSIFHFIFKYNLTFINDDSILFKFDKGTNILKFEDYQDYTYVSFISKDNTNIT FT IKDLKYECENLSLSAYSNSCLSNAFLPYKDGIISSNNPIICILTK" FT gene complement(317116..317793) FT /gene="rpe" FT /locus_tag="MCAP_0260" FT CDS complement(317116..317793) FT /codon_start=1 FT /transl_table=4 FT /gene="rpe" FT /locus_tag="MCAP_0260" FT /product="ribulose-phosphate 3-epimerase" FT /EC_number="5.1.3.1" FT /note="identified by match to protein family HMM PF00834" FT /db_xref="GOA:Q2SSL7" FT /db_xref="InterPro:IPR013785" FT /db_xref="UniProtKB/TrEMBL:Q2SSL7" FT /protein_id="ABC01398.1" FT /translation="MKKYIIAPSVLSANFMDLKNELELCKKNNINWIHYDVMDFDFVPN FT LTFGSKILHDIKKNIDINVDVHFMVNVKTKQFEDFFLDYIKAKPEMMTMHIESLKDNST FT INKFINLCKQNNILASLAISPNTDVSLVYPYLDKLDNVLVMSVEPGFGGQKFITSSLKK FT IEILDQLRKEKKYKYTIEVDGGINEQTSVLVKQAGVDMIVAGSYLFGSDDFTKRAKGLF FT DEL" FT gene complement(317795..318697) FT /gene="rsgA" FT /locus_tag="MCAP_0261" FT CDS complement(317795..318697) FT /codon_start=1 FT /transl_table=4 FT /gene="rsgA" FT /locus_tag="MCAP_0261" FT /product="ribosome small subunit-dependent GTPase A" FT /EC_number="3.6.1.-" FT /note="identified by match to protein family HMM PF03193; FT match to protein family HMM TIGR00157" FT /db_xref="GOA:Q2SSL6" FT /db_xref="InterPro:IPR010914" FT /db_xref="UniProtKB/TrEMBL:Q2SSL6" FT /protein_id="ABC01369.1" FT /translation="MQGILVKKDSNESYVFYENKIYKVYAKGNLKKELKPKVGDVVEFS FT ILEDGYGYIKEIKPRKNSLDRPKIANVDQVLIVTALYEPLFSSFLLNKYIMMLETLKIK FT PILIFTKVDLLKESSYYQEVMHKINWYEKMHYQVLIINNKDNLENKNTIILKLKELLKN FT KISVFTGQTGAGKSTTLNNFLDINKQIKTNEISKKLNRGKHTTTSIQLYNLENNIFIAD FT TPGFSAFDLNNIDIEHILYSWETFIPFLNKCKFVDCTHTHETKCVVKKAVAEHLLPTFI FT YNDYVKVYEELKQNRKNKY" FT gene complement(318707..319822) FT /locus_tag="MCAP_0262" FT CDS complement(318707..319822) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0262" FT /product="serine/threonine protein kinase, putative" FT /note="identified by similarity to GB:AAL58474.1; match to FT protein family HMM PF00069" FT /db_xref="GOA:Q2SSL5" FT /db_xref="InterPro:IPR008271" FT /db_xref="UniProtKB/TrEMBL:Q2SSL5" FT /protein_id="ABC01254.1" FT /translation="MQKTKKDLGIDKDALLNQIVNNRYKLVKYLNSGAFAVVFKALDLD FT ASVLEKKDVFVAIKIILKAKNKNIEAIKKRLFLETNTFAKLSFSKNIVKMKDVFSWQNY FT YVIVMELIDGADLSKKFNAYNNVLSNKEFIYYFLQSTKGLKEIHDNNIIHRDVKPANIL FT IGNDSKVKISDFGISKIKSIILDDSQNHISPGTPRYTAPEQFLNFESRKDAFYFESDIY FT SIGVIMYEFLTGGMLFLNYNSNTASSKERERANFQQHILKEVVRPREINPNISQALENI FT IMKCLAKDYKNRYHSFDQIIEDLQKAKQEQNVNLDFPNMWWENESSLNIKNNNTLKYQY FT FFKNTNSKYFIFWILIVISIFIIFLIALFLK" FT gene complement(319822..320085) FT /locus_tag="MCAP_0263" FT CDS complement(319822..320085) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0263" FT /product="conserved hypothetical protein" FT /db_xref="GOA:Q2SSL4" FT /db_xref="InterPro:IPR001932" FT /db_xref="UniProtKB/TrEMBL:Q2SSL4" FT /protein_id="ABC01486.1" FT /translation="MKNTYWKCLTSALGPTKKLKIDSYFLKDSNGLFCLTTDGIHDFID FT IKTFKDYLDLKSSLRTKAKNIIKYSINNLSTDNSSIILLEVM" FT gene complement(320054..320581) FT /locus_tag="MCAP_0264" FT CDS complement(320054..320581) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0264" FT /product="conserved hypothetical protein" FT /note="The orthologous genes in other organisms are FT annotated as serine/threonine phosphatase; however no clear FT case can be made for this gene having that enzymatic FT activity based on sequence homology to known FT serine/threonine phosphatases." FT /db_xref="GOA:Q2SSL3" FT /db_xref="InterPro:IPR001932" FT /db_xref="UniProtKB/TrEMBL:Q2SSL3" FT /protein_id="ABC01823.1" FT /translation="MKIKAVGLSEKGNFRKENQDYLNYYKNTDGSFLAIICDGMGGHKC FT GEIASRLAVNTFVDLFKKSNFKQKESKEIFSWLENSISYIISVMKKYVESFIEAKDMGT FT TLSAILIANNNAHIINIGDSRIYHLKDQHFNQVTIDQNLMNSNYDMQKIKKQAQKYYGT FT KFNEKYLLKMFN" FT gene complement(320611..322023) FT /locus_tag="MCAP_0265" FT CDS complement(320611..322023) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0265" FT /product="membrane protein, putative" FT /note="MCAP_0265 has 1 membrane spanning region" FT /db_xref="UniProtKB/TrEMBL:Q2SSL2" FT /protein_id="ABC01569.1" FT /translation="MIKMFLALLSSMNLSNIDLNKQRHTRIENFKSEFNLVEQVDITRT FT IKASNTPSKNSDSNFYLSKGLANFYNENVENILKSFNFKLSDEYISFIKDGMKLEISLT FT VNLDVITTNDQYLNNKYDLTFYLSNDSFINQSSQNTTWKNIRYQTIDKNITDYIDTNNH FT WQFSFNKDLYLFNLKHVFNKKHNFRFTDFNNLHSFNSLKYSINNIKYRFFTPISLYKTI FT KEFDFNINKNNVDINDIKKQIYLQQTNFKNSEFYKQNKVLWDGLYDNLKLEHQQEKKLK FT RFIWDDKVNLKITLPIKQKYKKYLKDIYFITKYFKKIDLNWLIEVDELLVSKNDLKNIN FT KLFPDLNLLFLTALETEVKNNLLIIKPKQEYQNKFYNQKEIRLNFKDENITKIKEENSI FT SNNSNILNQNQQLDTKNNSTTLTNNSNLNKLIYKNPYLYISIAIILLVLICLLFLLNKI FT IAKSLNKKSKST" FT gene 322126..322542 FT /locus_tag="MCAP_0266" FT CDS 322126..322542 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0266" FT /product="conserved hypothetical protein TIGR00150" FT /note="Thiw protein contains a P-loop and a FT nucleotide-binding motif GXXGXGKT characteristic of the FT TIGR00150 proteins; identified by match to protein family FT HMM PF02367; match to protein family HMM TIGR00150" FT /db_xref="InterPro:IPR003442" FT /db_xref="UniProtKB/TrEMBL:Q2SSL1" FT /protein_id="ABC01868.1" FT /translation="MKVKVNNLEQTYKLAKKVKKIIQNKKIPFYVLLKGDLGAGKTTFT FT KALLEEFEVKQNITSPSFVIMNQYFVNDLKINHMDAYRLNNDSELEMYLDEFLDSLNII FT EWYENIDLDLNTINKLIIEIKIIDENKRLFFIGE" FT gene 322544..323107 FT /locus_tag="MCAP_0267" FT CDS 322544..323107 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0267" FT /product="metalloendopeptidase, putative" FT /EC_number="3.4.24.-" FT /note="This has a ProDom Peptidase M22, glycoprotease FT signature. This is a member of COG1214 Inactive homologs of FT metal-dependent proteases, putative molecular chaperones. FT Is is conserved in all mycoplasma genomes except FT Phytoplasma asteris. The gene cannot be disrupted in M. FT genitalium; identified by match to protein family HMM FT PF00814" FT /db_xref="GOA:Q2SSL0" FT /db_xref="InterPro:IPR000905" FT /db_xref="UniProtKB/TrEMBL:Q2SSL0" FT /protein_id="ABC01572.1" FT /translation="MNLFIDTTNWKLIYILEKDDQIIDSLIILNNKKLSDIAILKLNEF FT LLKNKLTIKDLKAFYLTIGPGSYTGVRVGLTIVKTLKVLNNNFEVFIINSLLYQAGLNN FT VISCIDARSNKYYISVYNNAKQLLDISLIEQNQIDDLLFKYKDFELVNDYEFDYIKHYL FT DLKKFFINIKDDNQLNPLYIKSFI" FT gene complement(323167..324522) FT /locus_tag="MCAP_0268" FT CDS complement(323167..324522) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0268" FT /product="lipoprotein, putative" FT /note="This ORF encodes tandem sequences containing the FT lppQ-Variable-Repeat-Peptide motif; identified by match to FT protein family HMM TIGR02167" FT /db_xref="InterPro:IPR011889" FT /db_xref="UniProtKB/TrEMBL:Q2SSK9" FT /protein_id="ABC01634.1" FT /translation="MKKLLTVLGSMTLITTVGTSVIACKTTDSTISETQLAQKVKNIWN FT DNFKDKITSAKNFSMIVEMIKDKLNNKEKELVDLSNQEESRNRPKKWEPNQKINVKVGE FT QKIELDFGEVKEGRKATKYKDPKTGEIKTTDAADFSTVNGLKEVKEIIEFGYHEHKDNH FT DGNKTHIRVVAMPTSIQIVPKELPKEITSTRSMFWDAEEFNQDISMWDTSNLETIDQMF FT VGAKKFNQDISKWDVSNVRIMDSAFSETEEFDQDLSDWDVSNVVSMLQMFSKSKFNNNE FT KPLTWNEKTKNVKNMSTMFAKNHVFNQDISKWNVSNVEDMTQMFLEAKEFNQDLSEWNV FT GNVKKMRFMFGSAEKFINKNKSLNNWDVSKVKDMGNMFNKAKMFNQDISNWKTSSLENI FT EAMFLDAENFDQNLSSWDTSKIKTYSAYHNGAKKWTDTNKRPKINQQNGKQK" FT gene complement(324791..326143) FT /locus_tag="MCAP_0269" FT CDS complement(324791..326143) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0269" FT /product="lipoprotein, putative" FT /note="This ORF encodes tandem sequences containing the FT lppQ-Variable-Repeat-Peptide motif; identified by match to FT protein family HMM TIGR02167" FT /db_xref="InterPro:IPR011889" FT /db_xref="UniProtKB/TrEMBL:Q2SSK8" FT /protein_id="ABC01288.1" FT /translation="MKKLLTVLGSMTLIATVGTSVIACKTTDSTISETQLTQKVQTIWN FT DNFKDKITSAKNFSMIIEMIKEKLNGKEKELISLSNQEESRKRPVKEQDNQKINIKIGE FT QKIELNFGEVKEGKKATKYKDPKTGEIKSTDATDFSKIEELKEVKEIIEIGYFEDIDDR FT DNKVQIRAVVMPESIEKISDFLPREITSTKAMFWDAKVFNQDISMWDTSNLESLDAMFL FT GAKKFNQDLSNWNVSNVEILDRTFFETEEFDQDLSNWNVSNVKTMKKTFAKAKKYNNGN FT KPLTWNEKTKNVKDMSTMFAKNHVFNQDISKWNVSNVEDMTQMFLEAKEFNQDLNDWNV FT SNVKKMRAMFRETEKFNKSLNKWNVSNVEDMGNMFMRTKEFDQDISMWNISKLKNIEAM FT FLGAEKFNQNLSNWKTDNIKIYAGYHNDAKKWSQENKLKFNSTPASTPKKK" FT gene complement(326350..331656) FT /locus_tag="MCAP_0270" FT CDS complement(326350..331656) FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0270" FT /product="ABC transporter, permease protein, putative" FT /note="This appears to be an ABC transporter permease FT protein or possibly a permease protein/substrate bindng FT protein; however there is no ATPase in the vicinity. There FT are similar genes in other mycoplasmas also without nearby FT ATPases; identified by match to protein family HMM PF02687" FT /db_xref="GOA:Q2SSK7" FT /db_xref="InterPro:IPR003838" FT /db_xref="UniProtKB/TrEMBL:Q2SSK7" FT /protein_id="ABC01424.1" FT /translation="MLKQGLKWIIKFKLQLIIIIFLTFIASSILTISFTTNKRLKTAYD FT QIVNNSKSQKFDSTYQIVVGNKAKPENGDPLFVPIFDFINKEYTGFNDEGFSNFNLYFN FT KFYGKETLLTKVIGSDEFKKNWTSDKNKNLFLKDQKDEEVAKNQEDFDFVINDLLFSTM FT IDLLNKNDQAINNTVISKYTKTNPNWFKHFLKDNKPFTWLEFLNNKELIDKLEKEHPEE FT LKIYYYSYYAFESFSQYLFKTIRTFIRHDKWKDQKDNISKIVYEFLFGIKFEENLNYSL FT REKYITTNQNKYTTHFNKTVLKTEFEKMNFLNKNKEDNFFNDIIEKGFKGILRPLIVFI FT KEENKNINIEKVVQYSETNELRGFLSGSNIYTQNVDKLPEIFKNNDLVDLLTLNANPFL FT NITNKASGFFISSQDINNSTSKDFLITSAFLTHHKLAAITNGYDLYIRPEIIFNDPITK FT KTFRIVNISNQKHTNYLVLNGNKSLNASQITISRQFAKANKIKIGSSINLGQAVGLIVS FT GYAVDTYSFFPTSDPNVPLPKSDSGGLVYASDKTINQIIGDQTDPSNNDQTTIYNFFLI FT KKNNDANLKNVYLDHFSKANKIRENIKAYNSQNKADTFYKTLSFDKSWYSLNWTLYQKI FT TFWYSLATFLTSSLIALISALAVFVGVIKSIQANAKQIGILKANGVYSKTIASSYIWYA FT LILVFIPIPIGWMLGTILQVPFVGIFKDYFSLKVEVIEFDWISIIISVIIFGILIGLFS FT FIVAVININKPVLEVINHTKKWSKPKITDWLSKYLFKRLKFNTLLMLKLTESGKKPFSL FT LLILLFIATLFTSVGIAIPSIAIHTKDTYFKNINYNNEYQIFNNVTNTPLGKDVINLWN FT GHQNLDNSYKTIKTTHQNISYYDDPNSYTLSVQNSSILPNLIYKINNKDANKAEILTPY FT KSFIKNYLESGISDLYTNLLDWAVYQLSIANSRSILIGNIEQLYAYILNDADLNKHFEN FT DKAKLDFLNITTQPLTQFVSRILEVVFDSKVQKDTDWKEKILNLVLGYAPPFIKSYLTN FT DSRKTQLAFGFQSQNVISKKDQLATSFIPFLNNKKANYQILGLDKTQNSFKIEQNLKEQ FT VFLSNSDIQNIYQIINSPYTNNGTDLVSNKTKQILYNRKTNTLIVPTILNQTLSQNSKY FT NQNILENISSKNYQLMYKTKSNDFKVLPKQAWLYDDSDYLQTKYVTKHNNWIDQPIQSI FT NTTNNYSSYGYEVVDFNNTKSYYLNPYNLDVNKFTQRQVIDLYSDKLENNNDLSIEKQV FT DNIVENSPIFGDFVINNSGEIIKSFLRPYYQLRNLKLFIPISNEISWEDFAKYSLGWGN FT NKEPNDDWKTNLDKNDQKTREYIQPALKKLKSEQVPLSVKNAWNSVLTNNQINEYLEIR FT PYDFSIEQERRIDKRHIYFAFTNNYEKIKGVLKSSPTIALDNLILNGSALFYRRALGKR FT QNVPAILKLENSKVNYVNKNLKIKLKNVGVSDIYGKSYAIVDSDLANMIYGYDISRSIN FT YDYKPFDTSKIITKNQLFNTYKTTTWQKQNNLDPWNNTYLKTKDVFNYSPHYYYNTIFS FT NTSEPLTITSSVSIIPEKRLGLAIIDLLNLSDYKTAISDINFINQTKQLIDQLTKTSIY FT IAIIIITAIVLSSSLLIILITGIYISQYKSFMIMLRSMGYKNSQIIWYVLGITKIFNIL FT IILLTISIVFVSIIIFNQLFVISNISIPIGTQWWAPLICVVLILFSFFVSIWISTRKIR FT KTQPNFVLNEIE" FT gene 331924..335061 FT /locus_tag="MCAP_0271" FT CDS 331924..335061 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0271" FT /product="membrane protein, putative" FT /note="MCAP_0271 has 1 membrane spanning region, FT N-terminal." FT /db_xref="UniProtKB/TrEMBL:Q2SSK6" FT /protein_id="ABC01420.1" FT /translation="MKKSVKKAKPWIISLIVVFAFISGFLFFIKSYVDSSKQNYINKIQ FT NYIDASSYLAKSKILKNVEDLNEDYVNQKLSEQYIEQEFGKDFIWKPENNNTNLNNKVS FT DIYRTYFGKSIDVIEKDLKLQYRDSDKNLVDITDLKNGEFIPKNIDKIATLSKSSEDFL FT NGFSPSFASLGLSLFKSQVIKNQDNLNKIKNNQFLKQIVDFINNNQPLIKLLTKIFSTK FT KLEKDYYKDLTIKQAFNKNINLINTSLTNKSYEKHDEDHFADDLSDFVIENVTKIVKEE FT WNKKDKVEIIDKFKNIFNRLKDYFFKFNYLKIVDNLFRYVQSELYFSMYYVVNEDLTDP FT SQLLDQKIEDKKFKALVNNKLDFSLLINGLTKVLESKKYTTRLLDFLFKRADKSKIYFD FT HHKIPENVGTSSLILDLINFVQKTILKTNKLIRDAIEGLEDYIEKNMYELRNKITTYIR FT SFLDKNVSKFSNSVHFGYIHNSEDYNKLNVQIYTWGWITNFYYVDANIYIFGKDGLITK FT IFDLFKQIGNSISATSSNTFNYLKYVLYRDSSPVIDFKDNFEEIAKLINVGNELFSNQK FT MLNIDLRITFLKQIANIKGIYGIINLPNELDSLKDLLKTFGLSSFIKKVEDGVKPLQNI FT LDLLKEFGFINDTKEFLKQFDEYVKKIIEYLPKKYQSVNTLLNYDLVSNLYPKNSNITD FT FANDFTTKLAEFLFPKTNQTDDDKLLLPVIRLVRFDRNKKITSVSQIKQALADYSKKII FT SKESLFKNLINIRDFKIELPDIVLQHLGIENLKNLTILELLQIISKYINQFINHNQNES FT LSFDLSSVGFFLQALSTTVDITYSNNKKVENKNLIKALYDDLDSFDHKNDENNKGRPEA FT SYYNWDFITFKFSEKDKKTIDLKQIKNDFSYSPLHLLLGIDLNKAQYIKNTIGYALGTL FT IGGLTKTDENYRLSNENKKAAITIFSILNFTLKNYQSILKDLEYKKAGVYYKKDSWQTQ FT LISSNDKEIKYYLIRKLTSDNEINKKVGNRFEITLTNDQNASYWKISNIIALDYKH" FT gene 335085..335603 FT /locus_tag="MCAP_0272" FT CDS 335085..335603 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0272" FT /product="lipoprotein, putative" FT /db_xref="UniProtKB/TrEMBL:Q2SSK5" FT /protein_id="ABC01866.1" FT /translation="MKKLLTIFGSISLISMTSIRSIACKNINKSEKEEPSNKEKDKNKQ FT GDDNKEINENSEQPKRTKEENFGLIKKYGAEVFSLLESLKDKFEELYKKPENSELLKLA FT TDIVQLYQKLDGLTTINEFEKKFKSEYEKNKSSSKSFDEFSNELFEQWHKAVTEYEKQK FT DSILKILKQ" FT gene 335689..336228 FT /locus_tag="MCAP_0273" FT CDS 335689..336228 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0273" FT /product="lipoprotein, putative" FT /db_xref="UniProtKB/TrEMBL:Q2SSK4" FT /protein_id="ABC01841.1" FT /translation="MKKLLNILGTTAIIITTSFLVIACKASKQIDIKITNPNNVENKEE FT KSKNEKIENTEDSKKEEKDQKNEIQSDQSKENKEYVFKRTKKENFDSIKKYGLELVDSI FT FHKQEKYEKLKSNPSLSVLIRKITSIYSKIAKYKDIEEFESKLLPRLVNEESYREFDEA FT VTEYEKEKENIWKLLN" FT gene 336621..337358 FT /locus_tag="MCAP_0274" FT CDS 336621..337358 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0274" FT /product="hypothetical protein" FT /note="First ORF of Tra Island I. Element starts at FT nucleotide 336353 and encodes MCAP_0274-MCAP_0315. The last FT nucleotide of the element is 379887; identified by FT Glimmer2; putative" FT /db_xref="UniProtKB/TrEMBL:Q2SSK3" FT /protein_id="ABC01763.1" FT /translation="MEFQDIKNCYVKSIWNSLNNEFKDSKASEIATARTLTTNYLIEAQ FT NTDFVVQAIAIPRECIVPAKTGTGIWIANIKNTAKIFIPSNFVYDQDKTKPTVLIALPL FT KVNGKFFTTFYREKGAQRSSYYNLIKTYFFLLRVNIFYYIAKGKEKIKQQAKKAKEIWN FT KTENWVKKLFKKDEKQAMQDQASQKTNKNVSNYQKSTESIVEELDYISYLKEFFNPDHS FT NLQDEHIFEFTEEELECLKSAEN" FT gene 338352..338984 FT /locus_tag="MCAP_0275" FT CDS 338352..338984 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0275" FT /product="conserved hypothetical protein" FT /note="MCAP_0275, MCAP_0314 and MCAP_0169 form a highly FT paralagous family (>92% amino acid sequence identity)of FT hypothetical proteins of unknown function. MCAP_0275 and FT MCAP_0314 are encoded in Tra Island I. MCAP_0169 is encoded FT in Tra Island II" FT /db_xref="UniProtKB/TrEMBL:Q2SSK2" FT /protein_id="ABC01663.1" FT /translation="MKNILKKPIYNTDKTECLKKPIKRIFISGSADKYDGFKNENDAKL FT FLHTLAYKLAENNYHIVNGNGKGVGDFLLSGVTEYCLKNNKQISDYLTIMSFPQNNISK FT VNIKELYMKNREQMVEKCDTAVFVFGNKNNNIAEGMIQEYDLTKQKGLSLLPIKFTGGS FT AEKIFDLEYPNTTEIVKKAFSLINDNSTDDVNKLVENILAAINLLQV" FT gene 339294..339815 FT /locus_tag="MCAP_0276" FT CDS 339294..339815 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0276" FT /product="conserved hypothetical protein" FT /note="MCAP_0276, resident within Tra Island I, encodes FT tandem sequences containing the FT lppQ-Variable-Repeat-Peptide motif. The annotated start FT site is in a repeat motif. In-frame sequence extends nearly FT 90 amino acid residues 5' from the start, but no FT alternative start codon occurs in the extension. The FT extended region also has good homology with orthologous FT ORFs in M. mycoides SC: MSC_0203 and MSC_0209; identified FT by match to protein family HMM TIGR02167" FT /db_xref="InterPro:IPR011889" FT /db_xref="UniProtKB/TrEMBL:Q2SSK1" FT /protein_id="ABC01491.1" FT /translation="MFAMFDEAKNFNQPIGNWDTSNVTDMGYMFDGAYFFNQPIGNWDT FT SNVRGMAGMFKSTKNFNQPIGNWDTSNVGDMTEMFCFAKSFNQPIGNWDTSNVTDMGAM FT FGFAKSFNQPIGSWNTFKVIDMHYMFFGATNFNQDISMWNTSKVANKYNQDIGYVNPNW FT NPEHQPKFKK" FT gene 339845..340249 FT /locus_tag="MCAP_0277" FT CDS 339845..340249 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0277" FT /product="plasmid replication-initiation protein homolog" FT /note="MCAP_0277 is truncated in size compared to the FT Helicobacter pylori and M. mycoides plasmid homologs. FT However, homologs from M. capricolum subspecies FT capripneumoniae strain F38 and Mycoplasma bovine group 7 FT are also shorter, suggesting that a deletion has not FT occurred in MCAP_0277 (unpublished findings); identified by FT similarity to GP:150185" FT /db_xref="GOA:Q2SSK0" FT /db_xref="InterPro:IPR002631" FT /db_xref="UniProtKB/TrEMBL:Q2SSK0" FT /protein_id="ABC01519.1" FT /translation="MWITNLKMKREYRLSKEWCVISYQGESEHLDWKERLFKFPIVVKV FT ATIIHDNDLDEKGNIKKLHRHSILCFKEPIDYLTAKVIIKQIFNIELIQQVYSMIKYYQ FT YFTHSNHPNKFQYDPSKIEHLKGFNILDYQ" FT gene 340321..340929 FT /locus_tag="MCAP_0278" FT CDS 340321..340929 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0278" FT /product="conserved hypothetical protein" FT /note="Tra Island I encoded ORF with weak homology to ICEF FT ORF11, an ORF of unknown function encoded by an Integrative FT Conjugal Element of Mycoplasma fermentans. Tra Island I FT encoded MCAP_0279 and Tra Island II encoded MCAP_0181 also FT exhibit similar low homology to ICEF ORF11." FT /db_xref="UniProtKB/TrEMBL:Q2SSJ9" FT /protein_id="ABC01448.1" FT /translation="MKVLLIEQISNLSKDLILDKNQLVAKINDEIQTLDLDKQTKAIQK FT LIKIDELSEELDEKIRKEILTFLKLPFFNYETLDNLIYFIKNIANCFNIDKLNELSSNI FT KQPTFIKFCDFNEYIKVNPLLDYFDDQLKDNGLEAKISFKLIDELLDIKYPEETYVILN FT SWQNAIKKELKDRPKGIYLELELIDKYKIYLLEQIIKNK" FT gene 340973..341833 FT /locus_tag="MCAP_0279" FT CDS 340973..341833 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0279" FT /product="hypothetical protein" FT /note="Tra Island I encoded ORF with weak homology to ICEF FT ORF11, an ORF of unknown function encoded by an Integrative FT Conjugal Element of Mycoplasma fermentans. Tra Island I FT encoded MCAP_0278 and Tra Island II encoded MCAP_0181 also FT exhibit similar low homology to ICEF ORF11; identified by FT Glimmer2; putative" FT /db_xref="UniProtKB/TrEMBL:Q2SSJ8" FT /protein_id="ABC01334.1" FT /translation="MKKYFEYEDIKTLHSYAFDLNEEELTNLFNKQLDKFKNEINSYEL FT NLKDPEEAIKNAQVKVDSTKAAYERAKEDTKIVIKPEDKKVKEKLENDLKAAYERAQEE FT LKESQEAVKQLESDIQLTINYIKDFANETYSVSTEINEKIFNWLFFKPWNLETFEQIEK FT CYELINDKNSFLGELEEFADENNLTSFSDFCIEEEYKKVEDLLEIIDEDLQENGLETKY FT HFDLISDLNKRHESDYVRINAYYNGFSKIKQADGTEIEEVYDDKEIKELYKHYIIEEFV FT NDLNN" FT gene 342147..342296 FT /locus_tag="MCAP_0280" FT CDS 342147..342296 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0280" FT /product="hypothetical protein" FT /note="Tra Island I encoded ORF; identified by Glimmer2; FT putative" FT /db_xref="UniProtKB/TrEMBL:Q2SSJ7" FT /protein_id="ABC01246.1" FT /translation="MSFNFDDYIKLKLLGKTTKRVLDLIDESESNNKKEPKSTLDSILE FT DIFD" FT gene 342461..342769 FT /locus_tag="MCAP_0281" FT CDS 342461..342769 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0281" FT /product="Single-strand binding protein family" FT /note="Tra Island I encoded ORF; identified by similarity FT to GP:1763709; match to protein family HMM PF00436" FT /db_xref="GOA:Q2SSJ6" FT /db_xref="InterPro:IPR000424" FT /db_xref="UniProtKB/TrEMBL:Q2SSJ6" FT /protein_id="ABC01251.1" FT /translation="MNLVNIIGQLEGDATVAYTSKDGEKKLYKFVVKVPKPYKSKEVDS FT LDYINIKAWSNAVDDEFLLHNKAVVGIEGRIESFTSNNDLTNIRNEIFATRIIYLNK" FT gene 342820..343560 FT /locus_tag="MCAP_0282" FT CDS 342820..343560 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0282" FT /product="hypothetical protein" FT /note="Homology to ParA family proteins involved in FT partitioning of mobile elements. Paralogs are within Tra FT Island II (MCAP_0184) and Integrative Conjugal Element FT (ICEC) MCAP_0570; identified by Glimmer2; putative" FT /db_xref="GOA:Q2SSJ5" FT /db_xref="InterPro:IPR002586" FT /db_xref="UniProtKB/TrEMBL:Q2SSJ5" FT /protein_id="ABC01293.1" FT /translation="MKNYKKILIHNTKGGVGKTLITANIAAYLANQNKKVLLIDFDKQR FT SLTSYFTNSEKEESWKIFTDNQVPEIIQSNVHPNIWIIPGDSKLEPQIDFLVMELYFRN FT FEDKNFNDFDYIFLDLSPYQTNVTTISYKNVDSLILLTDPSLNSVEILSKAVLSWENTF FT EKIHLKNTIKAVIINKYTLNDQPKRAWDELQKSVNKYLLKTKIPNQANIAKSVLVGEKW FT MYEQNSSKEIFKDLIEELKQKGAI" FT gene 343562..343777 FT /locus_tag="MCAP_0283" FT CDS 343562..343777 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0283" FT /product="hypothetical protein" FT /note="Hypothetical protein encoded within Tra Island I. FT Paralogous MCAP_0185 (45% amino acid identity) encoded FT within Tra Island II; identified by Glimmer2; putative" FT /db_xref="UniProtKB/TrEMBL:Q2SSJ4" FT /protein_id="ABC01380.1" FT /translation="MDAKNFLSDEYTFYKPKNKQSSSKRVCITISKQTKLLEEEYKNIL FT GIQPNRSQIYSSYLKTLLNKLKNRTE" FT gene 343855..344736 FT /locus_tag="MCAP_0284" FT CDS 343855..344736 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0284" FT /product="membrane protein, putative" FT /note="MCAP_0284, resident within Tra Island I, has 5 FT membrane spanning regions; The C-terminal 94 amino acid FT residue region exhibits homology to MCAP_0086 and M. FT mycoides SC ORF MSC_0882." FT /db_xref="UniProtKB/TrEMBL:Q2SSJ3" FT /protein_id="ABC01189.1" FT /translation="MEQAINHNYDELSATYNSKPVLTNITIPKTIKSLIFFTKVKYKLI FT NLFSFWTCFLLSLFLINKYTHFLTKLINKIGFSIQMDYLNKYIKFISNLSLGWIITIII FT LSFLILVFYMINSYQFKIQTKRYQKEILINQNPDFLPFFVIKKYKSLIQKPYYVNYLCS FT SIYILIFTSLVIYTFYLISLWLKNIQQHILIIIKSNLIGYWIALAIFIIVVSYHIFALL FT TVKLLKGNFESTYNRNLLSEDEISKLKKIANRRSLIVLIITIAISLSLIFFFILFFKIE FT RRKINFFTRFKK" FT gene 344834..345322 FT /locus_tag="MCAP_0285" FT CDS 344834..345322 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0285" FT /product="hypothetical protein" FT /note="Tra Island I encoded ORF; identified by Glimmer2; FT putative" FT /db_xref="UniProtKB/TrEMBL:Q2SSJ2" FT /protein_id="ABC01075.1" FT /translation="MSNYMIYNIQPVLTSSAKLIVQELNKNCSWIINNFENYTDISDEL FT EDELEKLNSIFNQWKNLTNQLFNKDIFNKDNLNNLEQLFDEINIKLDVLSTSIFNIYDL FT AFFHSSLPELYIFNDNKKNCFSPNDWKISNELKHLVLSLTYLKSLPDIFKELIITLLN" FT gene 345374..345943 FT /locus_tag="MCAP_0286" FT CDS 345374..345943 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0286" FT /product="hypothetical protein" FT /note="Tra Island I encoded ORF; identified by Glimmer2; FT putative" FT /db_xref="UniProtKB/TrEMBL:Q2SSJ1" FT /protein_id="ABC01185.1" FT /translation="MKKANILNLIRYHIEKNDISFIKEALIIANNFTINGDIQLAEYII FT ELISPISDQYMWLKDEFYNIQKHLIKKENLSVDKEKQLLFKYFHNIDRTSKRDKIDFNI FT FLNKPVFIKLWNDSKLYKGYLIKTNTKPEQYRILPFQYNSTNYNIIFQKYDVEWLQTKN FT NIRYLTNDFILTNKEKQLYLLNKTRD" FT gene 346021..346839 FT /locus_tag="MCAP_0287" FT CDS 346021..346839 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0287" FT /product="lipoprotein, putative" FT /note="This Tra Island I resident ORF encodes tandem FT sequences containing the lppQ-Variable-Repeat-Peptide FT motif; identified by match to protein family HMM PF03382; FT match to protein family HMM TIGR02167" FT /db_xref="InterPro:IPR011889" FT /db_xref="UniProtKB/TrEMBL:Q2SSJ0" FT /protein_id="ABC01679.1" FT /translation="MKKLLTILGLTSLSVLPAFSVLSCTPYYWLQSLKNIKKPIYNADK FT TECLEIGYFENWKGEIQIEQFKPTTKKVPSVLPKEIISLRRAFQGNKNKSIDGIQHWDT FT SNIRDMSSMFYQATNFNQPIGNWDTSNVTDMRWMFAGATNFNQDISTKKITRSNDSKYL FT AWDTSNVEEMFAMFDGAKSFNQSIGNWDTSNVTFMSSMFREATSFNQDISKWDVSSVTG FT MNGMFYGAENFNQDLSKWNVSQVVNFKNFAIDSNPNWKPKHKPKFNRAIS" FT gene 346886..347458 FT /locus_tag="MCAP_0288" FT CDS 346886..347458 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0288" FT /product="conserved hypothetical protein" FT /note="This ORF, resident within Tra Island I, encodes FT tandem sequences containing the FT lppQ-Variable-Repeat-Peptide motif; identified by match to FT protein family HMM PF03382; match to protein family HMM FT TIGR02167" FT /db_xref="InterPro:IPR011889" FT /db_xref="UniProtKB/TrEMBL:Q2SSI9" FT /protein_id="ABC01784.1" FT /translation="MRKPWNILKMPKYNRDKTECLEIGYFLNTHTKEIQIIKFPSTIKK FT VPNNLPNLITSLRNAFSDNKNEFIEGVQYWDTSNITNMSWTFNNAIKFNQDLSSWNTSN FT VTNMKYMFNGAVSFNQDLSKWNTHNVQTFEGMFKSTKNFNQDLSGWNISSLHLLGEYLF FT AKNSNLTYKNQPKWKDWCDPDLYKYND" FT gene 347716..348396 FT /locus_tag="MCAP_0289" FT CDS 347716..348396 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0289" FT /product="conserved hypothetical protein" FT /note="This ORF, resident within Tra Island I, encodes FT tandem sequences containing the FT lppQ-Variable-Repeat-Peptide motif; identified by match to FT protein family HMM PF03382; match to protein family HMM FT TIGR02167" FT /db_xref="InterPro:IPR011889" FT /db_xref="UniProtKB/TrEMBL:Q2SSI8" FT /protein_id="ABC01558.1" FT /translation="MKDKFKQAIYNADKTECLEIGYFKNEQDEIQIEQFLPTTKKVPSI FT LPKEIISLQNAFKDNENKFIDGIQHWDTSNITDMFAIFSGATSFNQDISNWNVSNVIDM FT SGMFCFAKSFNQPIGNWDTSKVKNMSAMFFQASNFNQDISNWNTSSVLYMNHMFGFAAS FT FNQDISKWNVSNLISIFAMFFQAMSFNQNLSSWDTSNIKFAYAKKYESSNPNWKSEHHP FT QFNN" FT gene 348460..348876 FT /locus_tag="MCAP_0290" FT CDS 348460..348876 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0290" FT /product="hypothetical protein" FT /note="Tra Island I encoded ORF; identified by Glimmer2; FT putative" FT /db_xref="UniProtKB/TrEMBL:Q2SSI7" FT /protein_id="ABC01609.1" FT /translation="MFLKRVHLVVPETDYQFKELKGEIDLYIDERQYDIENLIEYPQLV FT YEIKDLWNYKNYEKLEELKKQLKLDHNFDYLLVEKSNNRMKFLTSNDLHTITLADFYAK FT LAEEFQEKKIKILRLSNDDISLTDIPNEWLELEE" FT gene 348951..349499 FT /locus_tag="MCAP_0291" FT CDS 348951..349499 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0291" FT /product="conserved hypothetical protein" FT /note="This ORF, resident within Tra Island I, encodes FT tandem sequences containing the FT lppQ-Variable-Repeat-Peptide motif; identified by match to FT protein family HMM PF03382; match to protein family HMM FT TIGR02167" FT /db_xref="InterPro:IPR011889" FT /db_xref="UniProtKB/TrEMBL:Q2SSI6" FT /protein_id="ABC01139.1" FT /translation="MFETWVIIQDQIYNVDQTECLQIGYFLDKKANKVQIIEFLPTTKK FT VPNVLPKEITSLSFAFQGNKNEFIDGIQYWDTSNITDMNHMFYWCFDFNQDISMWNTSN FT VTNMQSMFSWTSSFNQDISKWDVSNVLNMKNMFYTADKFNQDLSNWNVLKVKREFQNIG FT FVNPNWKSEHQPKFNKVIS" FT gene 349555..350307 FT /locus_tag="MCAP_0292" FT CDS 349555..350307 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0292" FT /product="conserved hypothetical protein" FT /note="This ORF, resident within Tra Island I, encodes FT tandem sequences containing the FT lppQ-Variable-Repeat-Peptide motif; identified by match to FT protein family HMM PF03382; match to protein family HMM FT TIGR02167" FT /db_xref="InterPro:IPR011889" FT /db_xref="UniProtKB/TrEMBL:Q2SSI5" FT /protein_id="ABC01454.1" FT /translation="MFKQAIYNFDKTECLEIGYFTNHKGVIQIEEFPKTIKKVPKDLPK FT EITSLELAFSYNQNTYIVGVEYWDTKNITDMNYMFFEAESFNQDISNWDTSNVTDMNSM FT FEGATNFNQDISKWDVSNVEDMGWMFDGAESFNQPIGSWNTSKVENTNYMFSKASSFNQ FT DISSWNTSNVIDMNSMFEYAKNFNQDIGNWNTSKVTNMNSMFNFASKFNKDLSKWDTSN FT VYVFGQNIGFVNPNWKSEHQPKFNKVIS" FT gene 350364..351119 FT /locus_tag="MCAP_0293" FT CDS 350364..351119 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0293" FT /product="conserved hypothetical protein" FT /note="This ORF, resident within Tra Island I, encodes FT tandem sequences containing the FT lppQ-Variable-Repeat-Peptide motif; identified by match to FT protein family HMM PF03382; match to protein family HMM FT TIGR02167" FT /db_xref="InterPro:IPR011889" FT /db_xref="UniProtKB/TrEMBL:Q2SSI4" FT /protein_id="ABC01226.1" FT /translation="MFKQAIYNFDKTECLEIGYFTNHKGVIQIEQFPKVTKKVPKILPK FT EITSLELAFIYNENEFIDGIEYWDTKNITDMNYMFFEAENFNQNISTWDTSNVTDMNSM FT FEYATNFNQDISKWDVSNVEDMGWMFFGASSFNQPIGNWNTSKVENTNYMFFKAEKFNQ FT DISSWNTSNVIDMNSMFEYAKNFNQDIGNWNTSKVTNMNSMFNFASKFNKDLSKWDTSN FT VARYGQNIGYVNPNWKPEHKPQFYKARSF" FT gene 351168..351779 FT /locus_tag="MCAP_0294" FT CDS 351168..351779 FT /codon_start=1 FT /transl_table=4 FT /locus_tag="MCAP_0294" FT /product="hypothetical protein" FT /note="Tra Island I encoded ORF; identified by Glimmer2; FT putative" FT /db_xref=" |