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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CK773828; SV 1; linear; mRNA; EST; MAM; 786 BP.
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AC   CK773828;
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DT   25-FEB-2004 (Rel. 78, Created)
DT   24-FEB-2005 (Rel. 82, Last updated, Version 2)
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DE   962517 MARC 2BOV Bos taurus cDNA 3', mRNA sequence.
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KW   EST.
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OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
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RN   [1]
RP   1-786
RX   DOI; 10.1101/gr.170101
RX   PUBMED; 11282978.
RA   Smith T.P., Grosse W.M., Freking B.A., Roberts A.J., Stone R.T., Casas E.,
RA   Wray J.E., White J., Cho J., Fahrenkrug S.C., Bennett G.L., Heaton M.P.,
RA   Laegreid W.W., Rohrer G.A., Chitko-McKown C.G., Pertea G., Holt I.,
RA   Karamycheva S., Liang F., Quackenbush J., Keele J.W.;
RT   "Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries
RT   and construction of a gene index for cattle";
RL   Genome Res. 11(4):626-630(2001).
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DR   GOA; P0C591.
DR   InterPro; IPR000340; Dual-sp_phosphatase_cat-dom.
DR   InterPro; IPR000387; Dual-sp/Tyr_phosphatase.
DR   InterPro; IPR016130; Tyr_Pase_AS.
DR   InterPro; IPR020405; Dual-sp_phosphatase_famA.
DR   InterPro; IPR020417; Dual-sp_phosphatase.
DR   InterPro; IPR020422; Dual-sp_phosphatase_subgr_cat.
DR   UNILIB; 10685; 2820.
DR   UniProtKB/Swiss-Prot; P0C591; DUPD1_BOVIN.
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CC   Contact: Smith TPL
CC   USDA, ARS, US Meat Animal Research Center
CC   PO Box 166, Clay Center, NE 68933-0166, USA
CC   Tel: 402 762 4366
CC   Fax: 402 762 4390
CC   Email: smith@email.marc.usda.gov
CC   Single pass sequencing. Bases called with phred v0.020425.c and
CC   trimmed with the aid of the trim_alt option. Vector identified with
CC   cross_match v0.990329.
CC   Plate: 80  row: I  column: 23
CC   Seq primer: GTAATACGACTCACTATAGGG.
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FH   Key             Location/Qualifiers
FH
FT   source          1..786
FT                   /organism="Bos taurus"
FT                   /lab_host="DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="MARC 2BOV"
FT                   /tissue_type="pooled"
FT                   /note="Vector: pCMV SPORT6; Site_1: NotI; Site_2: SalI;
FT                   Library made from pooled tissue from testis, thymus,
FT                   semitendonosus muscle, longissimus muscle, pancreas,
FT                   adrenal, and endometrium."
FT                   /db_xref="taxon:9913"
FT                   /db_xref="UNILIB:10685"
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SQ   Sequence 786 BP; 181 A; 218 C; 210 G; 177 T; 0 other;
     gtggttagaa aataaaggta tattttaaaa ttatattttt aaaaatgtga ctttcaaaca        60
     aagccaaatg tttaatcaca gcacaatgtc aacagatttt taagtactct tctctgcttc       120
     catcttacaa aaaaaaaaaa caagaacggg gcctgcgcgc tcacctgtaa ccaattgaga       180
     cgggaagccg gtccgcgcca ttttgcagtg aagccaggcg ccgggctcgt cccggagccc       240
     actgggaatg cccccctgtt caccagcccc cgggaagttt aaaattgttt ggaaggagtc       300
     aagctttggt ttcatgtccc ttctctgcga caaaagaagt catggggcaa agctgtttcc       360
     agccttccct ctccgttccc aaacgtccag ctggccccgc gagggggccc tacggctcct       420
     gctcacactt ctcggcgtcc tcaccctgct gggcctgtcg cctctgctgc accagctgcc       480
     tgtccagttc ccggagctgc ttcagaaagc cccggttggg taggacgcag cggttcttgg       540
     ccacttgttg gatggcgtcc accagggtca tgttcctgtg gatcatcagg taggccagga       600
     ccagagtcgc cgaccggctg cggcccatga cgcagtgaac caggatctta ttgtgatcat       660
     agcggagggc agcgtcaatg aaagcggcag ctgggtagaa gaaaacgctg aggtcaaagc       720
     tgggcaggtc atcagcctcg acgccatggt actcgatggc catgtcgcgg tagtagtcgg       780
     gccccg                                                                  786
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