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EBI DbfetchID CAAJ01001147; SV 1; linear; genomic DNA; WGS; INV; 3397 BP. XX AC CAAJ01001147; CAAJ01000000; CAAJ00000000; XX PR Project:147; XX DT 12-NOV-2004 (Rel. 81, Created) DT 04-DEC-2008 (Rel. 98, Last updated, Version 4) XX DE Plasmodium chabaudi whole genome shotgun assembly, contig PC_RP1242 XX KW WGS. XX OS Plasmodium chabaudi chabaudi OC Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodium; OC Plasmodium (Vinckeia). XX RN [1] RX DOI; 10.1126/science.1103717 RX PUBMED; 15637271. RA Hall N., Karras M., Raine J.D., Carlton J.M., Kooij T.W.A., Berriman M., RA Florens L., Janssen C.S., Pain A., Christophides G.K., James K., RA Rutherford K., Harris B., Harris D., Churcher C., Quail M.A., Ormond D., RA Doggett J., Trueman H.E., Mendoza J., Bidwell S.L., Rajandream M.A., RA Carucci D.J., Yates J.R., Kafatos F.C., Janse C.J., Barrell B., RA Turner C.M.R., Waters A.P., Sinden R.S.; RT "A comprehensive survey of the Plasmodium life cycle by genomic, RT transcriptomic, and proteomic analyses"; RL Science 307(5706):82-86(2005). XX RN [2] RP 1-3397 RA Hall N.; RT ; RL Submitted (01-SEP-2004) to the EMBL/GenBank/DDBJ databases. RL Pathogen Sequencing Unit, The Sanger Institute, The Wellcome Trust Genome RL Campus, Cambridge CB10 1SA XX CC THIS IS A LOW COVERAGE GENOME ASSEMBLY CONTAINING AUTOMATED ANNOTATION CC THERE MAY BE MISTAKES IN THE ANNOTATION AS WELL AS THE UNDERLYING CC SEQUENCE AND ASSEMBLY. MANY GENE PREDICTIOS ARE PARTIAL AND WILL NOT CC CONTAIN START OR STOP CODONS. SOME GENE PREDICTIONS HAVE NON-STANDARD CC SPLICING OR IN FRAME STOP CODONS.THE SEQUENCE HAS BEEN RELEASED AND CC PUBLISHED IN THIS CONDITION BY THE SANGER INSTITUTE FOR THE BENEFIT OF CC THE SCIENTIFIC COMMUNITY. THE SANGER INSTITUTE IS COMMITTED TO TRYING CC TO OBTAIN FUNDS TO COMPLETE THE GENOME AND CURATE THE ANNOTATION. XX FH Key Location/Qualifiers FH FT source 1..3397 FT /organism="Plasmodium chabaudi chabaudi" FT /mol_type="genomic DNA" FT /clone_lib="pUC18" FT /db_xref="taxon:31271" FT CDS complement(join(1486..1605,1732..2035,2208..2367, FT 2472..2615,2872..3010)) FT /locus_tag="PC000220.01.0" FT /product="cell division control protein 2 homolog, FT putative" FT /db_xref="GOA:Q4Y4B1" FT /db_xref="InterPro:IPR000719" FT /db_xref="InterPro:IPR002290" FT /db_xref="InterPro:IPR008271" FT /db_xref="InterPro:IPR011009" FT /db_xref="InterPro:IPR017441" FT /db_xref="InterPro:IPR017442" FT /db_xref="UniProtKB/Swiss-Prot:Q4Y4B1" FT /protein_id="CAH75998.1" FT /translation="MEKYHGLEKIGEGTYGVVYKAQNSDGESFALKKIRLEKEDEGIPS FT TAIREISILKELRHSNIVKLYDVIHAKKRLILVFEHLDQDLKKLIDVCDGGLESVTAKS FT FLLQLLNGIAYCHEHRVLHRDLKPQNLLINREGELKIADFGLARAFGIPARRYTHEVVT FT LWYRAPDILMGSKKYSTPIDIWSVGCIFAEMVNGRPLFPGVSDTDQLMRIFKILGTPNS FT QNWPDVFKLPKYDPNFPVYEPLPWETFIKGLDDTGIDLLSKMLKLDPNQRITAKQAIEH FT PYFKETS" FT CDS <1..348 FT /locus_tag="PC101989.00.0" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q4Y4B2" FT /protein_id="CAH75999.1" FT /translation="KEAISCNKSLSSLLYNTCSSKSQSDFSKCNEQVFNNGNIINCMLQ FT NAQKQCIQGKTRSGSSVSSISLRNKVNLDKKKSFTNTAKIVDVIIKKTENRNNDKISNH FT VGIINTKVVIE" XX SQ Sequence 3397 BP; 1280 A; 425 C; 409 G; 1283 T; 0 other; aaagaagcga tttcatgtaa taagtcatta agttctttat tatataatac atgctctagt 60 aaaagccagt ctgatttttc taaatgcaat gagcaagtat ttaataatgg caatataatt 120 aactgtatgc ttcaaaatgc acaaaagcaa tgtatccaag gtaaaaccag aagtggtagt 180 agtgtgtcca gtatttcctt acgaaataaa gttaatttag ataaaaaaaa atcatttaca 240 aatactgcaa aaatagtgga tgtgattatc aaaaaaacag agaatagaaa taatgataaa 300 attagtaatc atgtaggcat aataaataca aaggttgtta tagaatgact gtcacaaaaa 360 agtagcatgt ttttttttga aatatgatga tttatttata ttaaaagaga acaaactata 420 ccgtgataag cggcaagtta ttcaaatttt atttttctat atgcattctc aaaccgtata 480 tattttctca taataacaat tttaaaccct aatggaagta aatatttgga agtgtgcata 540 tatgtttaac ttccatttat ggtgaacttc aaattattcc atatgtatta catatttgta 600 ggtttctgtt gtgtgtatac ttgtttttgt ttgaaattaa aattgttaaa tgataataga 660 taatgtaata catcgtattt tccgtttgga ttcttaatga aatgtttttt tattatgttt 720 ttttgagtat cgttttgtta aacatgtttt atttattatg aacacatgaa aaaaaacgta 780 aaaattattt tactaaatca aaaaactttt acatttttct ataaaatgat gagatatgaa 840 gaatgtaaag aaagcaatgt tgtctttttt ttatattaaa actattttga tattgtcggg 900 ttttgtaaag tggtgtataa tttcccttct ttaatataaa gataatctat cttttcatat 960 tttttccttt gtaaaatttt attatatttt gttgggtata ggcacacctg cttacgaaaa 1020 agtcaatgtg atattattgt tgtgttcaat ccccaaaaga ataaacacac acacatcatc 1080 atttgtattt aagatcaaga ataaagagtg ttctataatc ataatgtttt taaatggcaa 1140 aatataatgt cttaatgcca aatattatga atagagatat atgcataatc aataatgcga 1200 tgcatttttt taatcctgta gaaatatatt aataataaaa aaattgcaat agcatagtta 1260 aaataagtta atatgtatat attctaatta gtttttaaaa caataaaatt agtattttta 1320 ataatgagag gtttataaga tgaaatgtaa aacgattaat ttgtatatgt attatgtata 1380 aaaataaacg ggattgattt atttttatta aaaaaaaaac ataataaaaa gtagttacaa 1440 atgttattgc atacaaaatc cgcattaaac aacggaatga aactattaac tagtttcttt 1500 aaaatacgga tgttctatcg cttgcttcgc agtaattctt tggttgggat ccaatttaag 1560 catttttgag agcaaatcaa ttccagtatc atctaatcct tttatctaat gaaaatatgt 1620 gtaatgtata aaaaaattgt tatatatatt tgcacatata ttatgtgtag ataatttcta 1680 caataatcaa atattataat acacgaaata taactataaa aaaaaaatta caaatgtttc 1740 ccatggcaaa ggctcataaa ctggaaaatt aggatcatat ttcgggagtt taaaaacatc 1800 aggccaattt tgagaatttg gagttcctaa tattttgaat attctcataa gttgatcggt 1860 atccgatacc cccggaaata atggcctacc atttaccatc tcggcaaata tgcatccaac 1920 actccatata tcaattggag ttgaatattt ctttgatccc attaaaatat ctggggctct 1980 ataccataat gttacaactt catgagtata ccttcgagca ggtattccaa aggctctata 2040 tttttaatat tgaaaaatat taatatatgt attttttatt ataatatgaa ttggagatat 2100 actttcttat taattataag cttcatttcg tatgaatata tatgtgtgtc agtagaaata 2160 tctttggtaa tgtgtttcgt ttttaaaata ggatatttaa tgattacctt gcgagcccaa 2220 aatcggcaat ttttaattcc ccttctctat ttattaataa attttgtggc ttcaaatcac 2280 gatgtaacac tctatgttca tggcaatatg caatgccatt tagaagttgc aataaaaacg 2340 attttgctgt aactgattcg agtcctcctt taaaaattat taaaaggaaa tatatatatt 2400 gttttataaa taaatgcgat aacatacaca tatttaacgc atttaaaaag gttttgatta 2460 ttaattttta ccatcacaaa catctataag cttcttgaga tcttggtcta gatgctcaaa 2520 gaccaatatt aatctttttt tagcatgtat gacatcatac aacttaacta tatttgaatg 2580 ccttaactct tttaaaatac taatttccct aatggctaca taatgaaagg cgaaaacatt 2640 taaattaaat atatatataa tataggccca tacgtatata tttattataa tggaatagaa 2700 ataacgacat actaatttat tgtatacaca ctaatccaac agatttatta caaatcatgc 2760 acatatacat actatactat atgtgtatgc aatatatgtg tacatataat aagccatttt 2820 ctacagtatt taatcgaaat tatatattaa aaataattat atcattctaa ccagttgatg 2880 gaattccttc atcctccttt tccaatctta ttttttttaa tgcaaatgac tccccatcac 2940 tgttttgcgc tttgtacact acaccatatg taccttctcc aattttttcc aaaccatggt 3000 atttttccat ttttttattt ataagtaaaa atcacaaata ttgtgctttt acctatataa 3060 attttcttat taccttatca ttacaatgaa taaaaaataa aacaagtata ttaataaagg 3120 tattataact agcgaaaatt gtcttgtata ttaatatttt atatatataa aaaaagcttt 3180 ttataagcta tatttatttc tataaaattt aataaataca atttatgcac aatgctcata 3240 aaaatattgt cgcattgctt ataattgttc atatattttt ctttctataa attattattg 3300 ttatttaaaa ataaataatt atgataattg aaaatttaac cattattact agctataata 3360 aaaaaaataa taataacgac actattaata taaaatt 3397 // |
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