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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BX831498; SV 1; linear; mRNA; HTC; PLN; 2581 BP.
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AC   BX831498;
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DT   06-FEB-2004 (Rel. 78, Created)
DT   06-FEB-2004 (Rel. 78, Last updated, Version 1)
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DE   Arabidopsis thaliana Full-length cDNA Complete sequence from clone
DE   GSLTPGH11ZA04 of Hormone Treated Callus of strain col-0 of Arabidopsis
DE   thaliana (thale cress).
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KW   GSLT_cDNA; HTC.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
OG   Plasmid pCMVSPORT_6
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RN   [1]
RP   1-2581
RA   Genoscope;
RT   ;
RL   Submitted (18-NOV-2003) to the EMBL/GenBank/DDBJ databases.
RL   Genoscope - Centre National de Sequencage : BP 191 91006 EVRY cedex -
RL   FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr).
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RN   [2]
RP   1-2581
RA   Castelli V., Aury J.M., Jaillon O., Wincker P., Clepet C., Menard M.,
RA   Cruaud C., Quetier F., Scarpelli C., Schachter V., Temple G., Caboche M.,
RA   Weissenbach J., Salanoubat M.;
RT   "Whole Genome Sequence Comparisons and "Full-Length" cDNA Sequences: A
RT   Combined Approach to Evaluate and Improve Arabidopsis Genome Annotation";
RL   Unpublished.
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DR   GOA; Q9LV16.
DR   InterPro; IPR001079; Galectin_CRD.
DR   InterPro; IPR002659; Glyco_trans_31.
DR   InterPro; IPR008985; ConA-like_lec_gl.
DR   InterPro; IPR013320; ConA-like_subgrp.
DR   UniProtKB/Swiss-Prot; Q9LV16; B3GTJ_ARATH.
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CC   The sequences are based on single pass reads.
CC   Life Technologies (a division of Invitrogen) members carried out
CC   full-length librairies construction : Temple G.
CC   Genoscope members carried out sequencing and annotation : Castelli V., Aury
CC   J.M., Jaillon O., Wincker P., Menard M., Cruaud C., Schachter V.,
CC   Weissenbach J., Salanoubat M.
CC   URGV INRA : Clepet C., Caboche M.
CC   Annotation is based on the June 2003 version of the Arabidopsis genome
CC   released by MIPS (Munich Information center for Protein Sequences).
CC   5 prime and 3 prime are assembled with Phrap.
CC   http://www.genoscope.cns.fr/externe/sequences/Banque_Projet_EF/Full_length
CC   http://www.genoscope.cns.fr/cgi-bin/ggb/ggb?source=Arabidopsis.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2581
FT                   /organism="Arabidopsis thaliana"
FT                   /plasmid="pCMVSPORT_6"
FT                   /strain="col-0"
FT                   /mol_type="mRNA"
FT                   /clone="GSLTPGH11ZA04"
FT                   /tissue_type="Hormone Treated Callus"
FT                   /db_xref="taxon:3702"
FT   gene            1..2581
FT                   /gene="At5g62620"
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SQ   Sequence 2581 BP; 716 A; 477 C; 604 G; 784 T; 0 other;
     agagctttaa ctcttcccct tgctgcttcc ttctccaaat tctcctgacg cgtttctgtt        60
     catcttacga ttttacacgt ctctctaaag atttaaattt tcgactttac gtttctttcg       120
     ggttttgaat tttctcacta aagatttgtc ttttccatag aaagttcttg aattttctct       180
     cttcgtgttc aaagggtttt tcagaattta tagtaaccca ccaatctact gattgtctcc       240
     gttcatcgta atctctcaag atttgatttt tatttgtttt ttgaaatttt gaattttgag       300
     attctgttcc tctttgatca tcatcactag ggttttctgt ttccagttaa aaaaaagttt       360
     ggatttttct tcgtataatt taggaatgag gaagcccaag ttgtcaaaac tcgagaggtt       420
     agagaaattc gacattttcg tttctctaag caagcagaga tcggttcaga tactaatggc       480
     ggttgggtta ctctacatgc ttcttatcac attcgaaatc cctttcgtct tcaaaaccgg       540
     gcttagttct ttatctcagg atccgcttaa cccgcacccg agaagcacaa tagtcagaga       600
     gagttacaag agagacgagc tccgactcga cctttaaaga gtctgcttta ccaggaatca       660
     caatcggaat caccggctca gggtttaaga agaaggactc ggatcctttc tagtttgaga       720
     ttcgacccgg aaacgtttaa cccgagtagc aaagatgggt ctgtggagct tcataaatct       780
     gctaaggtag cttgggaagt tggtcgaaag atatgggaag agcttgagtc tgggaaaacg       840
     ttgaaagctt tggagaagga gaagaagaag aagattgagg aacatgggaa aaactcgtgt       900
     tctctctctg tttacttaac cgggtctgat cttttgaaac gtgggataat catggagctt       960
     ccatgtggtt tactcttggg tacatattac agtggttggg aagccacgag ctgctcattc      1020
     ggagaaggac cctaagatat cgatgttaaa ggaaggagat gaagctgtga aggtttcaca      1080
     gtttaagttg gagcttcagg gtttgaaagc agtggaagga gaagagccac ctcggatact      1140
     ccacttgaat ccaaggctta agggtgattg gagtggtaag cctgtgattg agcagaacac      1200
     ttgctataga atgcaatggg gctcagcaca aagatgtgaa ggatggagat ctagggatga      1260
     tgaagagact gttgatggtc aggttaagtg cgagaaatgg gctcgggatg atagcattac      1320
     atctaaagaa gaagagtcta gcaaggcggc ttcatggtgg cttagtcgat taataggtcg      1380
     gagcaagaaa gtaactgttg aatggccatt tccattcaca gttgacaagc ttttcgtgct      1440
     tactcttagt gctggattgg aaggctacca tgttagtgtc gatgggaagc atgtcacttc      1500
     ctttccatac cgaactggat ttacgcttga ggatgctact ggtctaacca ttaacgggga      1560
     catagatgtt cactctgttt tcgctggctc tctcccaacc tcgcatccta gtttttctcc      1620
     tcagaggcat cttgagctct cgagcaattg gcaagcccca tcacttcctg atgagcaagt      1680
     tgatatgttc attggtatcc tttctgctgg taaccatttt gctgagagga tggctgtgag      1740
     gaggtcgtgg atgcaacata aactcgttaa atcttccaaa gtagtggctc ggttctttgt      1800
     tgcactgcac tcaaggaaag aagtaaatgt ggagctaaag aaggaagctg aattctttgg      1860
     ggacatagtt atagtccctt acatggacag ttatgacctt gtcgtcctca aaaccgttgc      1920
     aatttgcgag tacggggctc atcaacttgc agctaaattc atcatgaagt gtgatgacga      1980
     tacatttgta caagtggatg cggttcttag tgaagcaaag aaaacaccca cagatagaag      2040
     tctatacatt ggcaacatca attattatca caaaccactt cgccagggta aatggtctgt      2100
     tacatatgag gaatggccag aggaagacta tccaccttat gctaatggcc ccggatacat      2160
     attatcaaac gatatatctc gctttatcgt gaaagagttt gagaaacaca aattaaggat      2220
     gttcaaaatg gaagatgtaa gcgtgggaat gtgggtagaa caattcaaca atggtacaaa      2280
     accggtggac tacattcaca gcctcaggtt ttgtcagttt ggttgcatag agaattactt      2340
     gacggcgcat tatcagtcgc cgagacagat gatttgcttg tgggataagc tggtgttgac      2400
     aggcaaacct cagtgctgca acatgagatg acacatacca aatccttttc tttggtttat      2460
     aaaaggaaat agaaggtccg aagagttctt tttttttggg tagtagttta tagcatatag      2520
     tttcggttgt attatatcat ctttgatctt tagtaacgaa tctaaaattg atgttttctt      2580
     t                                                                      2581
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