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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BX824686; SV 1; linear; mRNA; HTC; PLN; 1542 BP.
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AC   BX824686;
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DT   06-FEB-2004 (Rel. 78, Created)
DT   06-FEB-2004 (Rel. 78, Last updated, Version 1)
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DE   Arabidopsis thaliana Full-length cDNA Complete sequence from clone
DE   GSLTPGH64ZD12 of Hormone Treated Callus of strain col-0 of Arabidopsis
DE   thaliana (thale cress).
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KW   GSLT_cDNA; HTC.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
OG   Plasmid pCMVSPORT_6
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RN   [1]
RP   1-1542
RA   Genoscope;
RT   ;
RL   Submitted (18-NOV-2003) to the EMBL/GenBank/DDBJ databases.
RL   Genoscope - Centre National de Sequencage : BP 191 91006 EVRY cedex -
RL   FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr).
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RN   [2]
RP   1-1542
RA   Castelli V., Aury J.M., Jaillon O., Wincker P., Clepet C., Menard M.,
RA   Cruaud C., Quetier F., Scarpelli C., Schachter V., Temple G., Caboche M.,
RA   Weissenbach J., Salanoubat M.;
RT   "Whole Genome Sequence Comparisons and "Full-Length" cDNA Sequences: A
RT   Combined Approach to Evaluate and Improve Arabidopsis Genome Annotation";
RL   Unpublished.
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DR   GOA; Q93ZB6.
DR   HSSP; 1J93; Q42967.
DR   InterPro; IPR000257; Uroporphyrinogen_deCOase.
DR   InterPro; IPR006361; Uroporphyrinogen_deCO2ase_HemE.
DR   UniProtKB/Swiss-Prot; Q93ZB6; DCUP1_ARATH.
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CC   The sequences are based on single pass reads.
CC   Life Technologies (a division of Invitrogen) members carried out
CC   full-length librairies construction : Temple G.
CC   Genoscope members carried out sequencing and annotation : Castelli V., Aury
CC   J.M., Jaillon O., Wincker P., Menard M., Cruaud C., Schachter V.,
CC   Weissenbach J., Salanoubat M.
CC   URGV INRA : Clepet C., Caboche M.
CC   Annotation is based on the June 2003 version of the Arabidopsis genome
CC   released by MIPS (Munich Information center for Protein Sequences).
CC   5 prime and 3 prime are assembled with Phrap.
CC   http://www.genoscope.cns.fr/externe/sequences/Banque_Projet_EF/Full_length
CC   http://www.genoscope.cns.fr/cgi-bin/ggb/ggb?source=Arabidopsis.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1542
FT                   /organism="Arabidopsis thaliana"
FT                   /plasmid="pCMVSPORT_6"
FT                   /strain="col-0"
FT                   /mol_type="mRNA"
FT                   /clone="GSLTPGH64ZD12"
FT                   /tissue_type="Hormone Treated Callus"
FT                   /db_xref="taxon:3702"
FT   gene            1..1542
FT                   /gene="At3g14930"
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SQ   Sequence 1542 BP; 423 A; 310 C; 372 G; 437 T; 0 other;
     gagcgggcaa aatcagaaag catttgatct tcaaactctt gggttcttct ctgattgata        60
     atgagcttat catcgccaac cagacagtgc ttgtagctcg tccagatgtt actcctcggg       120
     attatcgttt ccgattggat ttggatcgaa tcccatcaat gtgggattgg tttgttaccc       180
     aaaaagatac agtattgctg ctcggaagtt cgtagtggct tgctcctcct cctcttccga       240
     tccacttttg gttaaggctg caaaagggca agccataagt cgtcctccag cttggatgat       300
     gaggcaagca ggaaggtata tggctgttta ccaaaagctc gccaagaaac atccgtcctt       360
     cagagagaga tcagagaaca ctgatctaat agtggaaatc tctttgcagc cttggcaagc       420
     attcagacca gacggtgtca tcattttctc tgacatcctc acccctttac ctgcattcgg       480
     tgtccctttt gatattgaag aggtaaaagg tcctgtaatc caatctccta tccgaactga       540
     agaagatatg aagagattac atcccattga tttgcgagaa actacagttt gttggagatt       600
     ctctcaagat tttgagacga gaggttgggg aacatgctgc ggtgttgggt ttcgttggag       660
     cgccttggac aattgcaaca tatattgttg aaggaggaac aactcgaaca tatacagtca       720
     taaagaatat gtgccacact gcaccagatg tattgagagc tctattatct catttaacca       780
     aggccattac cgagtatgtg gtttaccaag ttgagcacgg agctcactgc atacaaatat       840
     tcgattcctg gggtggccaa ctgactccgg agatgtggga gcgctggtcc aaaccataca       900
     ttgaagagat catacatgct gtaaagaaaa gatgtccaga tacgccgata gttttctaca       960
     tcaatggaaa tggtggcctt cttgagcgaa tgaaaggaac tgtgagcttg atgttattgg      1020
     acttgactgg actgtagata tggctgatgg aaggaggcga ttgggaagcg aggtaagtgt      1080
     gcagggaaaa tgttgatcca gcttacctat tctctccgct tcctgctttg accgcaagaa      1140
     atttgaaaga gttgtgaagt gtgctggacc aaaagggcat attctcaatc taggacacgg      1200
     tgtcttggta gggacaccag aggaagccgt ggctcatttc tttgaaaccg ctagaaactt      1260
     ggattaccaa acacttttcc aaaatcatgt tcctgcagaa aaagctgaac ctgaattggt      1320
     tgtctgagaa atggaatgag agaaaaagtt ccatgtctga cccttaatcg atgctagagt      1380
     tggtaacttg ctatgagata tatgcgaagc tgtccagttt ttgtttggct tgcttgagga      1440
     tttccaatct tctggaccaa gctctgctta acgtttaaca atgtattgag ttgctcctag      1500
     gcttcaaatg tgctgctctt atggagataa gactctggtt aa                         1542
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