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EBI DbfetchID BX640450; SV 1; linear; genomic DNA; STD; PRO; 346287 BP. XX AC BX640450; XX DT 09-AUG-2003 (Rel. 76, Created) DT 29-JUL-2008 (Rel. 96, Last updated, Version 6) XX DE Bordetella bronchiseptica strain RB50, complete genome; segment 14/16 XX KW complete genome. XX OS Bordetella bronchiseptica OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Bordetella. XX RN [2] RP 1-346287 RA Sebaihia M.; RT ; RL Submitted (06-AUG-2003) to the EMBL/GenBank/DDBJ databases. RL Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute, RL Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail: RL ms5@sanger.ac.uk XX RN [3] RA Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E., RA Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., RA Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A., RA Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I., RA Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., RA Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., RA Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., RA Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., RA Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., RA Barrell B.G., Maskell D.J.; RT "Comparative analysis of the genome sequences of Bordetella pertussis, RT Bordetella parapertussis and Bordetella bronchiseptica"; RL Nat. Genet. 35(1):0-0(2003). XX DR EMBL-CON; BX470250. DR RFAM; RF00521; SAM_alpha. XX FH Key Location/Qualifiers FH FT source 1..346287 FT /organism="Bordetella bronchiseptica" FT /strain="RB50" FT /mol_type="genomic DNA" FT /db_xref="taxon:518" FT CDS complement(65..1093) FT /transl_table=11 FT /locus_tag="BB4251" FT /product="putative acyl-CoA dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0421" FT /db_xref="GOA:Q7WFM0" FT /db_xref="InterPro:IPR006090" FT /db_xref="UniProtKB/TrEMBL:Q7WFM0" FT /protein_id="CAE34615.1" FT /translation="MVSTMQQDLYETFARALAGLCPLERVRELEAAADPRAGAARAWNE FT VDALGYGDALSPAEHGGAGLSLADAEGLLRAAGAMALPFPFADTLLARALLRAAGQAVP FT DGPIALGVALPHGAGWRCAPIAGVALAQAVAVEHDGCLALWPAPDAVQPGLFRPRASGA FT PAWRGTPAQAGRAGAPAGAVQAWRNAADAAGMAGAMQAVLDRCVAYVQERQQFGRALGR FT FQAVQQDISMLAEQVAAVAMAARLACASGALFPDPALAACARLRACEAVPVVCALAHAV FT HGAIGITEELPLGLYTARLHEWRATGMSEDDCAELLGRRVLADGERTLLDVVRGMVSAA FT HA" FT misc_feature complement(128..565) FT /note="HMMPfam hit to PF00441, DE Acyl-CoA dehydrogenase, FT C-terminal domain, score 6.3e-06" FT misc_feature complement(743..793) FT /note="PS00372 PTS EIIA domains phosphorylation site FT signature 2." FT CDS complement(1120..2292) FT /transl_table=11 FT /locus_tag="BB4252" FT /product="probable acyl-CoA dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0420" FT /db_xref="GOA:Q7WFL9" FT /db_xref="InterPro:IPR013786" FT /db_xref="UniProtKB/TrEMBL:Q7WFL9" FT /protein_id="CAE34616.1" FT /translation="MGAILGTIIEALQLAAIPAHDEALRPAVRAFLDEALREMPADRRA FT RSWMGHDAEFSRALARQGWLGLTLPVEYGGAGRSNFARFVLSEELLAVGAPVSAHWIAD FT RQTAPLILRFGSPAQRAFYLPRIIRGEAFFAIGMSEPDTGSDLASVRTRATPVADGWLL FT NGRKIWTTNAHRSHYMCALVRTSGAPEDRHRGLSQMIFDLALPGIEIRPIRDIAGDAHF FT CEVLFDNVLLPHDALVGEEGSGWRQVMAELALERSGPERIYSSMVLLDGWLAHLRRDAA FT PQRAQVCLAGRLAARLAVLRSMSLAVSQRLEQGADASLAAVLVKDLGTEFEQAVPELIG FT QALHASPQPAPDDVLMRTLAYLTLINPTFSLRGGTRHILRGIIARELGLR" FT misc_feature complement(1579..1884) FT /note="HMMPfam hit to PF02770, DE Acyl-CoA dehydrogenase, FT middle domain, score 4.9e-11" FT misc_feature complement(1756..1806) FT /note="PS00237 G-protein coupled receptors signature." FT misc_feature complement(1888..2244) FT /note="HMMPfam hit to PF02771, DE Acyl-CoA dehydrogenase, FT N-terminal domain, score 0.00021" FT CDS 2418..3395 FT /transl_table=11 FT /locus_tag="BB4253" FT /product="LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0419" FT /db_xref="GOA:Q7WFL8" FT /db_xref="HSSP:1IXC" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WFL8" FT /protein_id="CAE34617.1" FT /translation="MWTGQYIVHIASPAHHWRRAVELRQLKQLLVLSETLNFHRAAERL FT HMAQPPLSTAIKKLEQELGVQLFERLPAGLQPTPAAEVVLRYARATLFYADEIQRAAQE FT GASGKQGMLKVGFVGSSIYSLMPQLLSAFRKDYPRVDLVIEESTTVDLLRRLDAHTLDV FT ALVRFPVLEPSTARITLLQADHLMLAVPAGSRYAQRDDVALDELADEPFIGYSRTHVPG FT MHALIMYAFQQYGVVPHIAQEAIQVQTILSLVESGLGLAIVPKVACRQAGSGVRLVNVP FT QLAETIKVGIALAVHPDNATPTTANFVDMACRLMQTEPAAGQAR" FT misc_feature 2484..2663 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 7.5e-23" FT misc_feature 2526..2618 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 2733..3356 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 3.1e-43" FT CDS complement(3406..4377) FT /transl_table=11 FT /locus_tag="BB4254" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0418" FT /db_xref="GOA:Q7WFL7" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7WFL7" FT /protein_id="CAE34618.1" FT /translation="MHSRTLALALLSVAALAQGGSARAASDYPAHPVKIIVSLPPGSGA FT DTTARFLSKHLAERFKRPFVVENRPGGNSFIAAQAVATAPPDGYTLFVASNSPMTTNAA FT VFKNLPYDAVKDFAPVAPIARFPMALVVPANSPYRSVADLVAAARAAPGQLNFASGTAT FT YQVVLELFHEQNGIKATHVPYKGTSAALADVAGGVVQYSVADVSAALPLIRGGKLRPLA FT VTSTRRIKDLPDVPTMQESGNKGFEAYAWTAAFFPAKVDPAIVARVSDAVQALVRSQEG FT KAFMEQLGGEPFVGGPDTLAAFQRDELASMRRIAKLANIQQE" FT misc_feature complement(3418..4236) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 4.4e-85" FT misc_feature complement(4306..4377) FT /note="Signal peptide predicted for BB4254 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.873 between residues 24 and 25" FT CDS complement(4444..5229) FT /transl_table=11 FT /locus_tag="BB4255" FT /product="probable enoyl-CoA hydratase" FT /EC_number="4.2.1.17" FT /note="ortholog of Bordetella pertussis (BX470248) BP0417" FT /db_xref="GOA:Q7WFL6" FT /db_xref="HSSP:1HZD" FT /db_xref="InterPro:IPR001753" FT /db_xref="UniProtKB/TrEMBL:Q7WFL6" FT /protein_id="CAE34619.1" FT /translation="MTDFLRHERHGGVLLLTMDRERTRNALSDADAVEALVQACARIGA FT DLSVRAVVLTGSHGVFSSGGNLKTLSDTVGAGLGEPVHSRQAYRSGIQRIPLALYNLEV FT PTIAAVNGPAIGAGCDLACMCDIRLAARQASFAESFVKLGLTPGDGGAWLLPRIVGMSR FT ACELAFTGRSIDAARARELGLVSEVFDADALLPAALALAQEIAQHSGHALRLTKRLLRE FT GQHTRLDTLLELSAGFQALAHHTQEHAGALDAHLSRKRG" FT misc_feature complement(4660..5190) FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 3.9e-50" FT CDS complement(5222..6454) FT /transl_table=11 FT /locus_tag="BB4256" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0416" FT /db_xref="GOA:Q7WFL5" FT /db_xref="HSSP:1Q7E" FT /db_xref="InterPro:IPR003673" FT /db_xref="UniProtKB/TrEMBL:Q7WFL5" FT /protein_id="CAE34620.1" FT /translation="MSGPLEGVRILDVTTVLMGPYATQILGDLGADVIKVEPPAGDNVR FT GIGPGRHADMGGIFLHANRSKRSIALDLKNPAGREALLKVAATCDVLVYNVRPQAMARL FT GLSYAEVAQANPSILYVGMYGYDQRGPYAARAAYDDLIQGAVGIPSLSVEAGSDIPRYA FT PSAMVDRIVGISAANAVTAGLYHRARTGQGQAIDVPMFETMAHLILGDHMMGQTFEPPL FT GPPGYPRILNADRRPYATRNGHICVLLYADKHWKAFFELIGQPGRDAADPRFRDIGTRT FT QHIHAIYRLVSDAIASRTTEEWLAAFEAADIPAMPVHTMASLLRDPHLEAIGFFGMVDH FT PSEGAVRMMAVPSRWSGTPPQPRGHAPRLGEHSVDVLKEAGYDDEAIAALVRNGAAIAA FT ARQLPEGTDHD" FT misc_feature complement(5681..6250) FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 3.6e-24" FT CDS complement(6650..7405) FT /transl_table=11 FT /locus_tag="BB4257" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0415" FT /db_xref="GOA:Q7WFL4" FT /db_xref="InterPro:IPR005496" FT /db_xref="UniProtKB/TrEMBL:Q7WFL4" FT /protein_id="CAE34621.1" FT /translation="MDYLVSLAQQPAAWAALATLIAMEVVLGIDNLIFISILTNKLPPQ FT HQTKARRIGIGMALILRLALLGTVAFIVQLTQPVFELFGHGFSWRDVILVAGGLFLVWK FT ATKEIHHHVDPNPGDDMFGGKAATLGFAAAVAQILMLDLVFSIDSIITAVGMTEHIPIM FT FVAVIVAVAVMLLAAEPLARFIERNPTVVMLALAFLMMIGMTLIAEGFGAHVPKGYIYA FT AMAFSALVEGLNMMARRAREGRGAGAAGG" FT misc_feature complement(join(6695..6754,6782..6841,6860..6928, FT 6971..7039,7097..7150,7178..7234,7295..7363)) FT /note="7 probable transmembrane helices predicted for FT BB4257 by TMHMM2.0 at aa 15-37, 58-76, 86-103, 123-145, FT 160-182, 189-208 and 218-237" FT misc_feature complement(6701..7378) FT /note="HMMPfam hit to PF03741, DE Integral membrane protein FT TerC family, score 6e-89" FT misc_feature complement(6734..6757) FT /note="PS00030 Eukaryotic putative RNA-binding region RNP-1 FT signature." FT CDS 7516..8034 FT /transl_table=11 FT /locus_tag="BB4258" FT /product="putative Mg(2+) transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP0414" FT /db_xref="GOA:Q7WFL3" FT /db_xref="InterPro:IPR003416" FT /db_xref="UniProtKB/TrEMBL:Q7WFL3" FT /protein_id="CAE34622.1" FT /translation="MDTVWMEIWTTVRNEFADIPDVAEATRIVLRLGMAVALGGLLGYE FT RERSGKAAGLRTHMLVALGAALFVLVPLQGGMEVGDLSRVLQGVIAGIGFLGAGAIIKL FT GNEGEIRGLTTSAGIWLTAAIGVAAGMGREATALASTLIALFVLAALRRLEKRIAARDD FT KRVVAQPPP" FT misc_feature 7609..7998 FT /note="HMMPfam hit to PF02308, DE MgtC family, score FT 3.2e-50" FT misc_feature join(7675..7743,7771..7830,7849..7908,7918..7977) FT /note="4 probable transmembrane helices predicted for FT BB4258 by TMHMM2.0 at aa 54-76, 86-105, 112-131 and FT 135-154" FT CDS complement(8031..10154) FT /transl_table=11 FT /gene="fusA" FT /gene_synonym="fus" FT /gene_synonym="far" FT /locus_tag="BB4259" FT /product="elongation factor G" FT /note="ortholog of Bordetella pertussis (BX470248) FT BP0409+BP0413" FT /db_xref="GOA:Q7WFL2" FT /db_xref="InterPro:IPR004161" FT /db_xref="UniProtKB/Swiss-Prot:Q7WFL2" FT /protein_id="CAE34623.1" FT /translation="MTRRTSIERYRNIGISAHIDAGKTTTTERILFYTGITHKLGEVHE FT GAATMDWMEQEQERGITITSAATTAFWRGMAGNYPEHRINIIDTPGHVDFTIEVERSMR FT VLDGACMVYDSVGGVQPQSETVWRQANKYGVPRIAFVNKMDRVGADFFRVQRQIVERLK FT GDAVPIQIPVGAEDHFEGVVDLVKMKAIIWDDASQGVRFEYRDIPPELQAQAEQWREKM FT IEKAAEANEALLEKYLSGQPLSEDEIKSGLRARTVANEIVPMLCGSAFKNKGVQAMLDA FT VIDYLPSPADVPAIIGHDERDREIERHPADDEPFSALAFKIMTDPFVGQLVFFRVYSGV FT VKSGDSVLNPLKSKKERLGRILQMHANERREISEVYAGDIAAAVGIKEITTGDTLTDPA FT HVIILERMTFPEPVISQAVEPRTKADQEKMGIALNRLAQEDPSFRVRTDEESGQTIISG FT MGELHLEILVDRMKREFGVEANVGKPQVAYRETIRSTVTDVEGKFVKQSGGRGQYGHVV FT LKLEPQEQGKGYEFVDAIKGGVVPREFIPAVDRGVRETLNTGVLAGYPVVDVKVTLVFG FT SYHDVDSNENAFRMAASMAFKEGMRRAKPVLLEPMMHVEVETPEDFTGNVMGDLSSRRG FT MVQGMEDIAGGGGKLVRAEVPLAEMFGYSTSLRSLTQGRATYSMEFKHYAEAPRQVAEQ FT IIAARGSGAAARG" FT misc_feature complement(8070..8339) FT /note="HMMPfam hit to PF00679, DE Elongation factor G FT C-terminus, score 6.5e-48" FT misc_feature complement(8343..8705) FT /note="HMMPfam hit to PF03764, DE Elongation factor G, FT domain IV, score 1.8e-68" FT misc_feature complement(8967..9206) FT /note="HMMPfam hit to PF03144, DE Elongation factor Tu FT domain 2, score 4.1e-24" FT misc_feature complement(9285..10133) FT /note="HMMPfam hit to PF00009, DE Elongation factor Tu GTP FT binding domain, score 2.5e-109" FT misc_feature complement(9957..10004) FT /note="PS00301 GTP-binding elongation factors signature." FT misc_feature complement(10083..10106) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(10565..11035) FT /transl_table=11 FT /locus_tag="BB4260" FT /product="putative universal stress protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0410" FT /db_xref="GOA:Q7WFL1" FT /db_xref="HSSP:1MJH" FT /db_xref="InterPro:IPR006015" FT /db_xref="UniProtKB/TrEMBL:Q7WFL1" FT /protein_id="CAE34624.1" FT /translation="MFKKILIPTDGSPLSAQAANAGICFARSTGAEVVALHVTQPFAAT FT IGFDGMAAAYAITDEDYEKASAEQAEKYLKLILDRAETAGVKAESRAVSNFNVADGIVQ FT AAGEAGCDLIFIGSHGRSGLSRLLLGSVTAKVLSLAHTAVLVYRVKEDKDKK" FT misc_feature complement(10592..11035) FT /note="HMMPfam hit to PF00582, DE Universal stress protein FT family, score 2.1e-15" FT misc_feature complement(10982..11035) FT /note="Signal peptide predicted for BB4260 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.937) with cleavage site FT probability 0.856 between residues 18 and 19" FT CDS complement(11124..11468) FT /transl_table=11 FT /locus_tag="BB4261" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0411" FT /db_xref="GOA:Q7WFL0" FT /db_xref="InterPro:IPR005939" FT /db_xref="UniProtKB/TrEMBL:Q7WFL0" FT /protein_id="CAE34625.1" FT /translation="MSAAIKPLTENFAVAPQLGPADMADVAAAGYKSVIINRPDFEGGP FT DQPTAADVSQAAQALGLQVEYQPVVGSAMTAADVARFAELLRTMPGPVLAYCRTGTRCT FT NLFAAAQQLG" FT CDS complement(11568..12968) FT /transl_table=11 FT /locus_tag="BB4262" FT /product="putative GntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0412" FT /db_xref="GOA:Q7WFK9" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WFK9" FT /protein_id="CAE34626.1" FT /translation="MRQADATLVTQLADDLARRIDEHGLRPGTRLPSIRRMAEQSGVSR FT FTVVEAYDRLVARGLVQSRRGAGFFVRARSASLTALASARVPQAAPETPVRVDVSWLLR FT NMFRETAAGMPGGAGLLPPEWLDPDMVAAAVRAVGRTVRGNLVSYGSPQGYAPLRQQLA FT SMLQADGVPAHPERNLLTTNGVTHGLDIVARHLIKPGDTVLVEDPAWFVIFGRLAAFGA FT RPVGVPRGPDGPDLAMLDRLAAEHKPRLYIINGAVHNPTGHTLSAGAAYDILRLAERHD FT FMVVEDDTYADLHPGGAMKLAALDRLERVILVGGFSKMLAASLRVGYIAAGAETLQRLT FT DLKMLAGLTSPELGERVVHRVLVEGQYRRHIERVRARVNEARLRSIQALQQLGLSVPHE FT PHAGMFVWADCGRDSEPVARNAAERGMLLAPGTLFSPSGAPSTMLRFSVAMVDTPGIWQ FT SIAAVMAQ" FT misc_feature complement(12756..12935) FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 3.2e-16" FT CDS 13157..14071 FT /transl_table=11 FT /locus_tag="BB4263" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0393" FT /db_xref="GOA:Q7WFK8" FT /db_xref="InterPro:IPR000620" FT /db_xref="UniProtKB/TrEMBL:Q7WFK8" FT /protein_id="CAE34627.1" FT /translation="MSPPSAQASAPSASPHAPSWEGYGYGLIGVLVFALTLPMTRLAVG FT ELSPLLVGLGRALLAAVPAAALLWLTRSRRPDRAEWSGIVLAAVGIVVGWPVASTLAMA FT SVPAAHGAVFNGLLPLSTAVFAAWRSGERPSPAFWSFAVLGAVLVAGYALRQGHGALQP FT GDLWLLLAVVLGGMGYAEGARASRTLGGWRTICWALVVSVPALLPAVLWLAHDAAWPSL FT PVAGAFAYLAFGSMFLGFFAWYRGLAIGGIARVGQIQLLQPFLTVVAAALLFNEQVEPI FT TYVFAVAVVLVIAGGRRAMVRKA" FT misc_feature join(13220..13288,13298..13366,13403..13462,13472..13540, FT 13559..13618,13646..13705,13724..13792,13820..13888, FT 13907..13975,13988..14041) FT /note="10 probable transmembrane helices predicted for FT BB4263 by TMHMM2.0 at aa 22-44, 48-70, 83-102, 106-128, FT 135-154, 164-183, 190-212, 222-244, 251-273 and 278-295" FT misc_feature 13247..13618 FT /note="HMMPfam hit to PF00892, DE Integral membrane protein FT DUF6, score 2.3e-08" FT misc_feature 13673..14050 FT /note="HMMPfam hit to PF00892, DE Integral membrane protein FT DUF6, score 1.3e-10" FT CDS 14068..14727 FT /transl_table=11 FT /locus_tag="BB4264" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0394" FT /db_xref="GOA:Q7WFK7" FT /db_xref="InterPro:IPR001123" FT /db_xref="UniProtKB/TrEMBL:Q7WFK7" FT /protein_id="CAE34628.1" FT /translation="MIGSDLSSLDQAPLASLSVLMPLVLFTLVNSLTPGPNNVMLASSG FT LTFGFRRTIPHLLGISVGFSIMLLMVGLGLGATLERLPWLYSTLKYGGAAYLLYLAWKI FT ATSGPMESGAERGKPLTFIQAALFQWVNPKAWVMIVSVVATYTPQHGYFANLIIATLVC FT GVVNLPSVGVWAAFGMALRRWLHRPAAVRAFNVGMAVLLVVSLYPVGLDLLALYTG" FT misc_feature join(14101..14169,14227..14295,14314..14373,14533..14601, FT 14638..14697) FT /note="5 probable transmembrane helices predicted for FT BB4264 by TMHMM2.0 at aa 12-34, 54-76, 83-102, 156-178 and FT 191-210" FT misc_feature 14314..14613 FT /note="HMMPfam hit to PF01810, DE LysE type translocator, FT score 0.0014" FT CDS 14815..15738 FT /transl_table=11 FT /locus_tag="BB4265" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0395" FT /db_xref="InterPro:IPR000073" FT /db_xref="UniProtKB/TrEMBL:Q7WFK6" FT /protein_id="CAE34629.1" FT /translation="MVSLPFRLSWRRMAAVLLLAAGALGFNQLDAWQRQAIFSPQTDQQ FT RWWREPPAGTEVFDLALPNGDKVHAWYWQSPRRDAPTVLYLHGARWNLNGSAFRMEGWT FT RMGYSMLAIDYRGFGQSTPLLPSEQSASQDAAAALQELARRQPDPARRFIYGHSLGGAI FT AIDLAARPDLPPFAGLIVESSFTSIGAMLGTMKWGWVPGATLLVTQPFASVDKLAALTT FT PMLLLHGTADRVVPHTMSDELYRAAQQVPADLKRLVKIEGASHSGAIRSGRIYEDAVAD FT FVRDAGRGYAGRQGAPTPLTASRPGT" FT misc_feature 14815..14907 FT /note="Signal peptide predicted for BB4265 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.992) with cleavage site FT probability 0.341 between residues 31 and 32" FT CDS complement(15744..16199) FT /transl_table=11 FT /locus_tag="BB4266" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0396" FT /db_xref="InterPro:IPR007896" FT /db_xref="UniProtKB/TrEMBL:Q7WFK5" FT /protein_id="CAE34630.1" FT /translation="MSSSSKQTPKTIKERFLHAFFFEIIAIGLSAPVAAWAMDQPLFDM FT GVLTAVIAWIALLWNMVYNAGFERLERRFGVVRTMPVRVAHAVGFELGLVLIIVPLAAW FT WLAISFWEAFMLDIGLLMFYLPYAFFYNLAYDKLRARWWGRIEPAGA" FT misc_feature complement(join(15795..15863,15873..15941,15999..16058, FT 16086..16154)) FT /note="4 probable transmembrane helices predicted for FT BB4266 by TMHMM2.0 at aa 16-38, 48-67, 87-109 and 113-135" FT misc_feature complement(16089..16199) FT /note="Signal peptide predicted for BB4266 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.993) with cleavage site FT probability 0.988 between residues 37 and 38" FT CDS complement(16196..17299) FT /transl_table=11 FT /locus_tag="BB4267" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0397" FT /db_xref="InterPro:IPR006879" FT /db_xref="UniProtKB/TrEMBL:Q7WFK4" FT /protein_id="CAE34631.1" FT /translation="MTSERYDEGQQPAHHVGPQRGQAGPFHAGDRDGPMGGGRGASDGN FT EPGNLSQQAAHVEEVSPLRNQAGDVRCRRIAVCGDDFGMNEAIDGALIELAGAGRLSAV FT SCMPLAPAFAADAPALARLDVDLGVHVDFTEAFAGAAPAAPGLAALLWRAYAGQLDPDW FT IDARLASQFDAFERAFGRAPDYVDGHQHVHQLPGILPRLRALLKRRYAGQRIWLRHTAP FT GLQFGLPLAEAAKARLIGALGAGALARAAGQEGWQTNRRMLGVYGFTGGPRRYAGLLHH FT WLMNARDGDLLMCHPGWPQVHGAAHASQRAAEYEVLAHPELGTWLARNGLRIVRLSQVR FT GRQASQESGKVRNVPHSGSFRRLASRL" FT CDS complement(17487..19106) FT /transl_table=11 FT /locus_tag="BB4268" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0398" FT /db_xref="GOA:Q7WFK3" FT /db_xref="InterPro:IPR003342" FT /db_xref="UniProtKB/TrEMBL:Q7WFK3" FT /protein_id="CAE34632.1" FT /translation="MTLATRSMQPHAVSPGQARSWPLPAAGWLLLAVGVWLAFLSWMRP FT LALPDEGRYAGVAWDMLRNGSFAVPLIDGMPYFHKPPLYYWLAELSFRLFGVNEWAARL FT PSALAAWASAVALYLFVRRHRDAASATLCVLVLATLPLFFGGAQYANMDMLVAGMITLC FT VLAGADTALRVRGGQAWRAMALATGVCAALAMLAKGLIGLVLPGAILLAWLAWRRDWRG FT LRALLWPPAILAFAVVAVPWFWLMQVRYPGFFQYFFVHQHFERFAQTGFNNVQPFWFYL FT PVIAGLALPWSLWAGGLLRKQFWAADADPDGLRRLALVWLAVIVAFFSMPQSKLVGYIM FT PVLPPLAFLLAEVVMGALRDPAVARATRRMARVSALVAVAICVTAVFVASFNARGSSRE FT LALSLRGELRPDDTLVALHTYPFDLQLYAHAARPMWVVDDWSNPEIPKRDNWRRELYDA FT VQFEPALGERLLVSADTFQQRLCQAPEGSRYWVWGTAADEEAYAPLRGQAARFADARRS FT LWLVLVDEAFKGRVCDGTPTGG" FT misc_feature complement(join(17928..17996,18033..18101,18114..18173, FT 18210..18278,18363..18431,18465..18533,18657..18725, FT 18744..18812,18978..19046)) FT /note="9 probable transmembrane helices predicted for FT BB4268 by TMHMM2.0 at aa 21-43, 99-121, 128-150, 192-214, FT 226-248, 277-299, 312-331, 336-358 and 371-393" FT misc_feature complement(18336..19037) FT /note="HMMPfam hit to PF02366, DE FT Dolichyl-phosphate-mannose-protein mannosyltransferase, FT score 2.4e-14" FT CDS complement(19103..20161) FT /transl_table=11 FT /locus_tag="BB4269" FT /product="putative glycosyl transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0399" FT /db_xref="GOA:Q7WFK2" FT /db_xref="InterPro:IPR001173" FT /db_xref="UniProtKB/TrEMBL:Q7WFK2" FT /protein_id="CAE34633.1" FT /translation="MFMYTEFRSQLLAGAGTSAAGQSARMAVLAGDGATGVQVSCVVPG FT LNEAANLRVLVPALRACLEQWCASWEIIVVDDGSTDDTAELMAQWSAVEGIRYVQLSRN FT FGKEAALTAGLEAADGDAVICLDADMQHPPELIGDMLAAWRNGAEMVYAVRRQRDDEPW FT FKRVGARAFYRLLSTARGVEVPPHAGDFRLMDRRVVEALVALPERTRFMKGLYAWVGFK FT SQAVPYTPQARRHGASHFSAWKLFRLACDGLTAFTTWPLRLVSLIGVLFALLSLSYGGY FT LVADYLISGNAVSGWTTIVTALLFFAGINLISLGVVGEYVARIFDEVKGRPLFIARQRR FT GRAKRAAKARSQ" FT misc_feature complement(join(19199..19267,19310..19378)) FT /note="2 probable transmembrane helices predicted for FT BB4269 by TMHMM2.0 at aa 262-284 and 299-321" FT misc_feature complement(19553..20044) FT /note="HMMPfam hit to PF00535, DE Glycosyl transferase, FT score 2e-32" FT misc_feature complement(20072..20161) FT /note="Signal peptide predicted for BB4269 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.931) with cleavage site FT probability 0.423 between residues 30 and 31" FT CDS 20291..20806 FT /transl_table=11 FT /locus_tag="BB4270" FT /product="putative acetyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0400" FT /db_xref="GOA:Q7WFK1" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:Q7WFK1" FT /protein_id="CAE34634.1" FT /translation="MPQSYIVRTMRPADVEAVLRVQAAVYPASLLESAALFQNRIEIAP FT ATCQVALDGQDLIGYLIAYPWDAGLPPALDRSLERLPGAADTWFVHDCAVLPAAQGGGV FT AAALLAGGRAQARRLGLRRASLVALAPAVGYWLRHGYQPLADSDALRAKLAGYGDGARY FT MVRADLAG" FT misc_feature 20435..20716 FT /note="HMMPfam hit to PF00583, DE Acetyltransferase (GNAT) FT family, score 2.9e-10" FT CDS 21002..22207 FT /transl_table=11 FT /gene="gltS" FT /gene_synonym="gltC" FT /locus_tag="BB4271" FT /product="putative sodium/glutamate symport carrier FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0402" FT /db_xref="GOA:Q7WFK0" FT /db_xref="InterPro:IPR004445" FT /db_xref="UniProtKB/TrEMBL:Q7WFK0" FT /protein_id="CAE34635.1" FT /translation="MISLTPVQSLLACCLVLVAGRILTTRIGVLSRYSIPDPIVGGLLF FT AVLATALGTWGGIQISLETNIKPTLLLIFFGCIGLTADLKLLARGGPRLIAFLLALIPF FT LVLQNAVGLGLAWLLDMHPLMGLIGGTITLVGGHGTGAAYAARFADINNIQDVMALAMT FT AATIGLVLGGIIGGPVAEWLIRRHKLDPRMAGKDANQVLPEVETTAEAPTATSFITSLT FT AVFVTVVVGTYLAGLVEDAPISLPNFLWCLATGAIIRNFGGYVGIRLDDRVSEIIGSIS FT LSLFLGLTMMTLDLSSVVRLAGPLALMLVAQALVCALYAGWAVFRMLKRDYEAAVMAAA FT FCGFAMGATATAIANMQALTRRHGPAPESFIVVPVTGAFLVDILNVIVLTSLIALPFVG FT GM" FT misc_feature 21005..22096 FT /note="HMMPfam hit to PF03616, DE Sodium/glutamate FT symporter, score 1.1e-103" FT misc_feature 21008..21040 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature join(21020..21088,21116..21175,21209..21262,21290..21358, FT 21371..21439,21482..21550,21647..21715,21743..21802, FT 21821..21880,21908..21976,21995..22063,22133..22201) FT /note="12 probable transmembrane helices predicted for FT BB4271 by TMHMM2.0 at aa 7-29, 39-58, 70-87, 97-119, FT 124-146, 161-183, 216-238, 248-267, 274-293, 303-325, FT 332-354 and 378-400" FT CDS 22204..23715 FT /transl_table=11 FT /locus_tag="BB4272" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0403" FT /db_xref="InterPro:IPR011852" FT /db_xref="UniProtKB/TrEMBL:Q7WFJ9" FT /protein_id="CAE34636.1" FT /translation="MTMFIRWLILSACLLLAACSRAPDTEILQRDVGQTLAATYGPDLF FT DIVALRRMGSATDSTAPPGQTRRVVYYDVVLGLKKDLTLGAWDQPGAAALVSLLDAGPR FT SISGVKSSGNAAGDQIVAHASAIYQRDADQWVHVAPASFTAAEAPSLDTGAPPPVTRQL FT LQTLEQITRSVPYSASSTAQHVVQQELERSVARINGRLARLQKGYPLATGPDKGEYLAF FT GQALAAIGRNEQVRVIPLITGGSADNMAMLRSGAAVAALSQADIAQLAYEGKGPFESQG FT PFSGLRALGSLYPELVHIVVRQGDGIATVGALRGKKIALGPAGSAVRTTLETVLAAHGL FT QPGRDYAVIDTPAAAALPQLSEGRVDAVAQVIGTPAAPLRAALTQARLALLPLDRAAID FT KLVQADPTLMALDIPANTYPSQAAAIPTVGMAALLVTTADLTRDEAAHMVDVVYRAGQD FT LLAAGSAQGAQVSAANAGRGLSIPLHDGAVETFEKLGAPPLPEGR" FT misc_feature 22204..22269 FT /note="Signal peptide predicted for BB4272 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.619 between residues 22 and 23" FT misc_feature 22228..22260 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(23731..25044) FT /transl_table=11 FT /gene="atoE" FT /locus_tag="BB4273" FT /product="putative short-chain fatty acids transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP0404" FT /db_xref="GOA:Q7WFJ8" FT /db_xref="InterPro:IPR006160" FT /db_xref="UniProtKB/TrEMBL:Q7WFJ8" FT /protein_id="CAE34637.1" FT /translation="MFKLMSRSAVKMVERYLPDPYVFVVLLTLVAAGAAMIIEGQTPMA FT VVRWWGNGFWGLLTFAMQMLLVLVTGYMLASTPLVKRMLARLASLATSAGGAIILVSVV FT SLAASWINWGFGLVVGALFAKQIARQVRVDYRLLVASAYSGFIIWHGGLAGSIPLTIAT FT EGHFSADKIGIIPTGDTIFAVFNLVIVVAMFILVPLVNRLMLPDEKESVYVDPARLEEA FT SVPASDDDKRPAARLENSRLLAWLIAAGGLAYMFDYYVVRGAGLNLNVINFSFLILAIL FT LHGTPRRLLASLDEAIKGGAGIVIQFPFYAGIMAIMMDSGLAATLSEWFVSIASAATLP FT FWTFISAGIVNIFIPSGGGQWAVQSPIVISAAQALGADMPRVAMAVAWGDAWTNMLQPF FT WALPVLAIAGLKAKDIMGYCIIQLLVTGVIISVGLSFF" FT misc_feature complement(23737..25044) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02667, DE Short chain fatty acid FT transporter, score 5.2e-178" FT misc_feature complement(join(23743..23802,23980..24048,24091..24159, FT 24193..24252,24262..24321,24436..24504,24562..24630, FT 24664..24717,24727..24786,24820..24888,24931..24984)) FT /note="11 probable transmembrane helices predicted for FT BB4273 by TMHMM2.0 at aa 21-38, 53-75, 87-106, 110-127, FT 139-161, 181-203, 242-261, 265-284, 296-318, 333-355 and FT 415-434" FT misc_feature complement(24847..24903) FT /note="PS00095 C-5 cytosine-specific DNA methylases FT C-terminal signature." FT CDS complement(25235..25414) FT /transl_table=11 FT /locus_tag="BB4274" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0405" FT /db_xref="UniProtKB/TrEMBL:Q7WFJ7" FT /protein_id="CAE34638.1" FT /translation="MHPDTNTMLIIIAAAVALMIVGFGLRDRNLGLGLLGIGLIAALAT FT IAYKAYITFNSFYY" FT misc_feature complement(join(25253..25321,25340..25402)) FT /note="2 probable transmembrane helices predicted for FT BB4274 by TMHMM2.0 at aa 5-25 and 32-54" FT tRNA complement(25690..25764) FT /note="tRNA Val anticodon CAC, Cove score 85.38" FT CDS complement(25824..26558) FT /transl_table=11 FT /gene="dnaQ" FT /gene_synonym="mutD" FT /locus_tag="BB4275" FT /product="DNA polymerase III, epsilon chain" FT /EC_number="2.7.7.7" FT /note="ortholog of Bordetella pertussis (BX470248) BP0406" FT /db_xref="GOA:Q7WFJ6" FT /db_xref="HSSP:1J54" FT /db_xref="InterPro:IPR013520" FT /db_xref="UniProtKB/TrEMBL:Q7WFJ6" FT /protein_id="CAE34639.1" FT /translation="MRQIIFDTETTGLDPAQGHRIVEIGCVEIVNRMVTGNNLHLYLNP FT DRDSDPEALAVHGLTTEFLADKPRFAEVAEQFLAFIADAELIAHNAAFDVKFFNAELQR FT IGRDPLNTHCENIVDSLLHARSLHPGKRNSLDALCDRYGISNAHRTLHGALLDSQLLAE FT VWLAMTRGQDALLIDVDDQGANANGALVLGKFDASVLTVLAASEAELAEHAAYLQALDK FT AVGGACAWRAIEPLPAESGQPG" FT misc_feature complement(26031..26066) FT /note="PS01258 Apoptosis regulator, Bcl-2 family BH2 domain FT signature." FT misc_feature complement(26040..26552) FT /note="HMMPfam hit to PF00929, DE Exonuclease, score FT 6.5e-37" FT CDS complement(26567..29653) FT /transl_table=11 FT /locus_tag="BB4276" FT /product="probable membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0407" FT /db_xref="GOA:Q7WFJ5" FT /db_xref="HSSP:1IWG" FT /db_xref="InterPro:IPR001036" FT /db_xref="UniProtKB/TrEMBL:Q7WFJ5" FT /protein_id="CAE34640.1" FT /translation="MVLSEICIRRPVFASVLSLIIVLIGLISYTRLSVREYPKIDEPIV FT SVDTTYKGASPEVIESQVTKPLEDQLAGIEGVDVMTSRSRSERSLINIKFSLSRDPDAA FT AAEVRDKVSRARRFLPDEIDEPIIGKVEADSQPIIYIAVESGSYSAIQTSDYINRYIKT FT RLSVLPGAAEVRVFGERLPSMRIYVDRDKLAAYGLTVQDVEAALRSQNVEIPAGRIESR FT AREFSVVSSTDLQTPAQFEDVVVANVKGYPVRLRDVAKVEIGAANDRVLSRYNGRSAIN FT IGLTRQSTANPLELSKAVRAEIVQLNQSLPAGMKLNIAYDSSVFIERSIDSVFKTIGEA FT IILVVLVIFFFLRNLRASIIPIVTIPVSLVGACALMYLFGFSINTLTLLAMVLAIGLVV FT DDAIVVLENIFRHIEEGMPRKQAAFQGSREIGFAVVAMTLTLVTVYAPLAFATGRTGRL FT FIEFALALAGAVLVSGFVALTLTPMMCSVLLRHQHSHNRWYNLIEGWLEALGRGYRRAL FT ELALRHRWTVVGVGAVVAAASGVLFSVVKSELAPIEDRGVVFGIVSAPEGATLNYTLDS FT MLGIEQFYAAIPEAATAQVTVGFPTVTDGTAILRLTPWEERTRRQQQIAQELQPKFASL FT PGVRAFPTNPPSLGQSARSKPVEFIIMSQASYPELAKLVGVFTNALRDYPGLQNIDTDL FT RLNTPELRVHVDRDKMADVGASVEVVGRTLESMLGGRQVTRYKDQGEQYDVIVQVVQGD FT RATPTDISGIYVRARDGSMVQLDNLLSVRESVSPQSLNHFNRLRAVKVDAAVAPGYALG FT EVLDHMHRVARDVLPNTVITDLDGQSREFRDSSGSIYLVFAMALAFIYLVLAAQFESWR FT NPFIIMLSVPLSMTGALLALWLTGGTLSIYSQIGLITLVGLITKHGILIVEFANQLRDQ FT GKAMHEAVVEASVLRLRPILMTTGAMVLGTVPLALAQGAGAESRQQIGWVLVGGLMLGT FT LLTLFVVPVAYSMIAAARPQGQRTGASHTGPAVAPPASE" FT misc_feature complement(26642..29647) FT /note="HMMPfam hit to PF00873, DE AcrB/AcrD/AcrF family, FT score 0" FT misc_feature complement(join(26648..26716,26759..26827,26888..26956, FT 26966..27034,27053..27121,28019..28087,28187..28255, FT 28298..28366,28424..28492,28520..28579,28598..28666, FT 29552..29620)) FT /note="12 probable transmembrane helices predicted for FT BB4276 by TMHMM2.0 at aa 12-34, 330-352, 359-378, 388-410, FT 430-452, 467-489, 523-545, 845-867, 874-896, 900-922, FT 943-965 and 980-1002" FT misc_feature complement(28535..28567) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(29666..30745) FT /transl_table=11 FT /locus_tag="BB4277" FT /product="putative HlyD-like secretion protein" FT /db_xref="GOA:Q7WFJ4" FT /db_xref="InterPro:IPR006143" FT /db_xref="UniProtKB/TrEMBL:Q7WFJ4" FT /protein_id="CAE34641.1" FT /translation="MKKAALIAAVAAGLAAGAALGLYVPRWLSNSGAPVTPLAQPGVTP FT AAVRVETAKVVETPFARGIAAVGSLRSDESVVLRPEVAGRIQHIDFKEGEAVRAGQTLV FT RLDDSVPRAELDQARANLALAQSQFRRAQDLQGRGFVSQQARDEAASSLKVQQAAAALA FT QARLDKMTIRAPFAGIVGLRDVSVGDYVNQGQDLAPLEAIDPLKVDFRVPEMYFSKVGV FT GQTLSVRLDALPGEQRQGVVYAVSPLVDAGGRSILLRATVANPDSVLRPGMFARVQLLF FT GQEKALAVPEAALSPSGQTQYVFRVRDGVAQRVEVTVGERREGRVELLTGVGAGDEVVV FT AGLQRLTDGAPVTIIANGS" FT misc_feature complement(29726..30526) FT /note="HMMPfam hit to PF00529, DE HlyD family secretion FT protein, score 7.2e-19" FT misc_feature complement(30665..30733) FT /note="1 probable transmembrane helix predicted for BB4277 FT by TMHMM2.0 at aa 5-27" FT misc_feature complement(30692..30745) FT /note="Signal peptide predicted for BB4277 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.484 between residues 18 and 19" FT CDS complement(30914..31381) FT /transl_table=11 FT /gene="rnhA" FT /gene_synonym="rnh" FT /gene_synonym="dasF" FT /gene_synonym="herA" FT /gene_synonym="sdrA" FT /locus_tag="BB4278" FT /product="ribonuclease HI" FT /EC_number="3.1.26.4" FT /note="ortholog of Bordetella pertussis (BX470248) BP3211" FT /db_xref="GOA:Q7WCJ8" FT /db_xref="HSSP:1G15" FT /db_xref="InterPro:IPR002156" FT /db_xref="UniProtKB/Swiss-Prot:Q7WCJ8" FT /protein_id="CAE34642.1" FT /translation="MQNLEGSGDGQQVEMWTDGACKGNPGPGGWGVLMRAGQHEKTMHG FT GERQTTNNRMELMAVIEGLRALKRPCRVTIHTDSQYVMKGMTEWLANWKRRGWRTADKK FT PVKNVELWQALDEQVGRHQVQWRWVRGHAGDPGNERADALANQGVEAARGR" FT misc_feature complement(30932..31354) FT /note="HMMPfam hit to PF00075, DE RNase H, score 4.1e-60" FT CDS complement(31442..32212) FT /transl_table=11 FT /locus_tag="BB4279" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3212" FT /db_xref="GOA:Q7WFJ3" FT /db_xref="InterPro:IPR013216" FT /db_xref="UniProtKB/TrEMBL:Q7WFJ3" FT /protein_id="CAE34643.1" FT /translation="MAEETPPIVELAEWFQTPPGQYVLAWEQAQFDEAVADIFGYYAWQ FT VGLAEPNLLRANRMPFKAWVGAGVPPPELAQGWQACVAAAPEALPFESQSVDLLVLPHA FT FECAEAPHLVLREVERVLVPEGRVVISGFNPWSLWGARNLMPGMEAWLPLPLSAQVALP FT RLKDWFKLLSFEVERGRFGCYAPACRTDKWLRRWRFMERYGQRWWGLGGAVYVVTATKK FT VAAMRLIGPAWKTRRKRAQAASVAVNRQADDPGR" FT CDS 32233..33033 FT /transl_table=11 FT /gene="gloB" FT /locus_tag="BB4280" FT /product="probable hydroxyacylglutathione hydrolase" FT /EC_number="3.1.2.6" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 probable hydroxyacylglutathione hydrolase glob or FT b0212 or z0236 or ecs0208 SWALL:GLO2_ECOLI (SWALL:Q47677) FT (251 aa) fasta scores: E(): 1.1e-36, 47.45% id in 255 aa" FT /note="ortholog of Bordetella pertussis (BX470248) BP3213" FT /db_xref="GOA:Q7WFJ2" FT /db_xref="InterPro:IPR017782" FT /db_xref="UniProtKB/TrEMBL:Q7WFJ2" FT /protein_id="CAE34644.1" FT /translation="MQTAPPLSAVVPLPAFSDNYIWALAHEGQAAVVDPGDAAPVLRWL FT RATGATLRAILLTHHHPDHVGGVLELVQATGATVYGPAGETLPHCDVRLAEGDRVTLPE FT LALALEVLDVPGHTAGHIAYTGRAAGVERVLFCGDTLFAGGCGRLFEGTPAQMLDSLEK FT LSALPADTQVCCAHEYTLANLRWALAVEPANRTLQQWYQRAQELRNEGTPTLPSTIGQE FT RETNPFLRTPHAAVAHAAAVWSGRSLATPVEVFAALRQWKNNFK" FT misc_feature 32272..32763 FT /note="HMMPfam hit to PF00753, DE Metallo-beta-lactamase FT superfamily, score 5.7e-41" FT CDS 33044..34453 FT /transl_table=11 FT /locus_tag="BB4281" FT /product="putative membrane-bound lytic murein FT transglycosylase D precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP3214" FT /db_xref="GOA:Q7WFJ1" FT /db_xref="InterPro:IPR000189" FT /db_xref="UniProtKB/TrEMBL:Q7WFJ1" FT /protein_id="CAE34645.1" FT /translation="MRFLRLLLPLFLAVLAGCAGTAKQNQAAGPSSNRYIAQDTSRTVD FT LTSPPSDAWDRIRRGFAIPNLNTDLAQEWTDYYASHPESVQRMAERAGKYLYFIVDEIN FT RRGLPTELALLPFVESAYNPTALSRSQASGLWQFIPTTGQHFNLKQDWWRDERRDPIAS FT TYAALDYLEKLFEMQGDWYLALASYNWGEGSVQRAMAKNEAAGLGTDYLSLNMPDETRN FT YVPKLQAIKNIIANPRKFAVVLPPVENTPYFVAVQKNRDIDIELAARLAEMPLDEFKAL FT NPAFNRPLIRGEHAPTLLLPADRADRFNANLQNYKGDLSSWKVYHTRRGESYAAIAKRF FT GISEAKLRASNDIGSKRKVAAGQALLIPGVPSGDGAANIQLASLSPPVGALDNVGEPRA FT AAAPRGKAPARVASARPNVRTHKVSSGDTLFGLARKYGTSVGALRALNNLKGNNLKLGS FT QLRIPGTGTRG" FT misc_feature 33044..33124 FT /note="Signal peptide predicted for BB4281 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.333 between residues 27 and 28" FT misc_feature 33065..33097 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 33329..33676 FT /note="HMMPfam hit to PF01464, DE Transglycosylase SLT FT domain, score 3.4e-22" FT misc_feature 33386..33472 FT /note="PS00922 Prokaryotic transglycosylases signature." FT misc_feature 34016..34147 FT /note="HMMPfam hit to PF01476, DE LysM domain, score FT 6.4e-08" FT misc_feature 34304..34432 FT /note="HMMPfam hit to PF01476, DE LysM domain, score FT 2.3e-15" FT CDS 34548..35333 FT /transl_table=11 FT /gene="fabI" FT /gene_synonym="envM" FT /locus_tag="BB4282" FT /product="enoyl-[acyl-carrier-protein] reductase [NADH]" FT /EC_number="1.3.1.9" FT /note="ortholog of Bordetella pertussis (BX470248) BP3215" FT /db_xref="GOA:Q7WFJ0" FT /db_xref="HSSP:1DFI" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7WFJ0" FT /protein_id="CAE34646.1" FT /translation="MGFLAGKRILMTGVLSNRSIAYGIARACRDQGADLAFTYVGDRFK FT ERITEFAASFGSDIVLPCDVAEDSQIDAAFAELGKRWDGLDGLVHAIGFAPREAIAGDF FT LDGLSRENFRIAHDISAYSFPAMAKAALPLMEGRKGSVLTLSYLGSERVVANYNTMGLA FT KASLEASVRYLATALGPRGIRANAISAGPIKTLAASGIKDFSSILKFVEANAPLRRNVT FT IEDVGNVAAFMLSDLAAGITGEITHVDAGFSTVVPGMEN" FT misc_feature 34560..35303 FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 4.2e-14" FT CDS complement(35485..35877) FT /transl_table=11 FT /locus_tag="BB4283" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3217" FT /db_xref="GOA:Q7WFI9" FT /db_xref="InterPro:IPR003718" FT /db_xref="UniProtKB/TrEMBL:Q7WFI9" FT /protein_id="CAE34647.1" FT /translation="MTIQVRANTPGGLQYTATAEGHELPLAMPQPQGEGPDPHDYFDTA FT LGGCKALTLMVYAQRKGLPLQAVDVDVVRDASEERKGIYRLTAKLKLHGDLDDAQIDEL FT LKVADKCPLHKLMTATDIQVSTIVVE" FT misc_feature complement(35491..35865) FT /note="HMMPfam hit to PF02566, DE OsmC-like protein, score FT 7.3e-16" FT CDS 36015..36695 FT /transl_table=11 FT /locus_tag="BB4284" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3218" FT /db_xref="InterPro:IPR007486" FT /db_xref="UniProtKB/TrEMBL:Q7WFI8" FT /protein_id="CAE34648.1" FT /translation="MSARQLLDQLLQSGQSLMQGAGAQAQQATQGGKGTFLAGLGGGAL FT GAGALGLLLGSKKARKIGGKVAMYGGMAALGALAYRAYDQYQRNQAGGAAAPAPQTLDR FT LPPAQAEQHSNAVLVAMIGAAKADGHIGPDERQLLETELAKLSGDAGDRAWLEAELARP FT LDPAVIAQQARTPEMGAEMYLASLLVADEQSFMERAYLDELARQLKLPAELKQQLEAQV FT PAAA" FT misc_feature join(36114..36182,36210..36263) FT /note="2 probable transmembrane helices predicted for FT BB4284 by TMHMM2.0 at aa 34-56 and 66-83" FT CDS complement(36700..37671) FT /transl_table=11 FT /locus_tag="BB4285" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3219" FT /db_xref="GOA:Q7WFI7" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7WFI7" FT /protein_id="CAE34649.1" FT /translation="MKSRVSILLAGCLLGAGAAAAQAPATYPDHAITIVVTFPPGGGTD FT LLARKLGAAMQQRLGQPVVVENRPGASGNIGARAVAEARPDGYTLLMVNSSFAVNPGVF FT RNLDFSPTRDFTAVINVAYVPSVIVTAEPAGDAGLPERLRQADTQSRTLAFASCGNGTP FT QHLAGEMLRQASGAWLQHVPYRGCGPALTDVLSRQVPLGIVTASSAAPFIHAGKLRALA FT VTSAQRSPLLPDVPTVAEQGAPGYELDQWHGLLAPAGTPPAVIQRLYEALSAIVAEPAM FT RRELESLGFNPVSEGPERFEALVQADIARFAALTARMGLRAD" FT misc_feature complement(36712..37533) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.2e-88" FT misc_feature complement(37609..37671) FT /note="Signal peptide predicted for BB4285 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.753 between residues 21 and 22" FT CDS complement(37767..38672) FT /transl_table=11 FT /gene="nadC" FT /locus_tag="BB4286" FT /product="putative nicotinate-nucleotide pyrophosphorylase" FT /EC_number="2.4.2.19" FT /note="ortholog of Bordetella pertussis (BX470248) BP3725" FT /db_xref="GOA:Q7WFI6" FT /db_xref="HSSP:1O4U" FT /db_xref="InterPro:IPR002638" FT /db_xref="UniProtKB/TrEMBL:Q7WFI6" FT /protein_id="CAE34650.1" FT /translation="MSINIGQAAPLAIDAAPTLRTAPAPLPQVMLEPLVRAALLEDLGR FT AGDITTDAIVPAQARAQTRLVARQAGVLAGLDLARLAFRLVDPEIEFHALLPDGAQLQP FT GAEIALIRGPARGMLTAERTALNFLCHLSGVASATASIVAAIGAGHTKVTCTRKTMPGL FT RAVQKYAVRVGGGSNHRYGLDDAVLIKDNHVAIAGGIDAAVQRARAAIGHMVKIEVEVD FT TLEQLRVALRLGVDVVLLDNMDLDTLREAVALVDGRAVTEASGRITPETAPAVAATGVD FT LMAIGWLTHSARVLDIGLDS" FT misc_feature complement(37773..38270) FT /note="HMMPfam hit to PF01729, DE Quinolinate FT phosphoribosyl transferase, C-terminal domain, score FT 2.9e-80" FT misc_feature complement(38274..38543) FT /note="HMMPfam hit to PF02749, DE Quinolinate FT phosphoribosyl transferase, N-terminal domain, score FT 4.2e-34" FT CDS complement(38775..39743) FT /transl_table=11 FT /locus_tag="BB4287" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3724" FT /db_xref="InterPro:IPR011213" FT /db_xref="UniProtKB/TrEMBL:Q7WFI5" FT /protein_id="CAE34651.1" FT /translation="MAAPRLPYPIPIALTDALDRSVSAELVAVLVAVTQGEPRVLTTED FT ARALPAGPFELAHRSLQAGLRAWVETQTHHPLGYVEQLYTFADSDRSNEAGARVISVSY FT LGLTREAGATGVAQVGWQHWYRYFPWEDWRAGRPAIIADEIAPRLLAWAGAGADAAARA FT QRRQRVALTFGLDGAGWNEDMVLQRYELLFEAGLVPESRHPDASGLPVAGQSMRHDHRR FT ILATGIARLRAKIKYRPVVFELMPPEFTLLQLQMAVEALAGRGLHKQNFRRLIEQQELV FT EETGGMASGAAGRPAKLFRFRRDVLLERAIAGSKLPLARQF" FT CDS 40086..40319 FT /transl_table=11 FT /locus_tag="BB4288" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3723" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7WFI4" FT /protein_id="CAE34652.1" FT /translation="MTKTARDSQPADPHAQSWPHRPVNARKGTDVMPMPEEAPQVAGMP FT RRGRAIAEPGDPGVITPEDDVLDTSHLSNPQR" FT CDS 40560..41921 FT /transl_table=11 FT /gene="pobA" FT /locus_tag="BB4290" FT /product="iron-sulphur protein" FT /EC_number="1.14.12.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3722" FT /note="Similar to Pseudomonas pseudoalcaligenes FT phenoxybenzoate dioxygenase alpha subunit pobA FT SWALL:POBA_PSEPS (SWALL:Q52185) (409 aa) fasta scores: E(): FT 4.5e-32, 37.15% id in 401 aa, and to Pseudomonas putida FT phthalate 4,5-dioxygenase oxygenase subunit pht3 FT SWALL:PHT3_PSEPU (SWALL:Q05183) (439 aa) fasta scores: E(): FT 9.7e-25, 31.32% id in 399 aa" FT /db_xref="GOA:Q7WFI3" FT /db_xref="InterPro:IPR017941" FT /db_xref="UniProtKB/TrEMBL:Q7WFI3" FT /protein_id="CAE34653.1" FT /translation="MEKKIVLVKPYSAYERDKTPAENADLTRVEKGSPMGEYLRRFWQP FT VALSEELGELPTAVRMFGEDLVLFRARNGKPGLLEKHCSHRGTSLEFGICEENGLRCCY FT HGWLFGVDGQILETPGDPPDSQLRFNVCHGAYPLHEYRGIIFGYFGPPADKPEFPVYDT FT YDIPGDRLVPYCITYPCNWLQVHENVMDPAHAVFLHTRISFTQFAEAWGELPEMDFVPT FT PTGMIYVTSRRWEDKVWVRSNDIVLPNLAQVGHIWEDGLTPKEFARVAITRWTTPIDDH FT TCRIIGWRHMHPDADPRGLADESLCGVETVDFFGQNGERPYADRQRMPGDYDAQISQRP FT IAVHAMENLTRCDRGVAMLRQLLRRESRKIANGEAPAISPLRANGATPTYAHDTVVSIP FT PADTDDAACVREIGKAITAIVVKGDHHEQADRPEQVRERIRAYAAEQASTATSE" FT misc_feature 40683..40985 FT /note="HMMPfam hit to PF00355, DE Rieske [2Fe-2S] domain, FT score 4.1e-16" FT CDS 41980..42618 FT /transl_table=11 FT /locus_tag="BB4291" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3721" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7WFI2" FT /protein_id="CAE34654.1" FT /translation="MSSPVHPGKVAWTGDNPGIYLKEQDDGPWTGLATYFHINYSPYGM FT GRGVLLLEQPDIAATLPQACNVCITDNEPLARYLMKEFFARFNSFRVSAGTEAISYLPL FT TEARSAGDTRSRYQEILRSRDIEVVLTWDGLTEPYAVDMPPEKGPTGRHEMYSLFIDAT FT DASITLNGKPLRGRVTTRNFDGGKKSSAFLAFSESWMETPSDGTDKRTT" FT CDS 42618..43487 FT /transl_table=11 FT /locus_tag="BB4292" FT /product="branched-chain amino acid transport system FT permease" FT /note="ortholog of Bordetella pertussis (BX470248) BP3720" FT /note="Similar to Streptomyces coelicolor putative branched FT amino acid transport system permease sco7183 or sc8a11.11 FT SWALL:Q9FBZ9 (EMBL:AL391041) (290 aa) fasta scores: E(): FT 1.1e-34, 40.78% id in 282 aa, and to Burkholderia cepacia FT putative channel-forming polypeptide SWALL:Q8VUC1 FT (EMBL:AF169302) (294 aa) fasta scores: E(): 3.8e-28, 33.21% FT id in 283 aa" FT /db_xref="GOA:Q7WFI1" FT /db_xref="InterPro:IPR001851" FT /db_xref="UniProtKB/TrEMBL:Q7WFI1" FT /protein_id="CAE34655.1" FT /translation="MTEFLQYLVSGLVVGCIYGLVAIGFTAVYNVTNIVNFAQGEASML FT GALATASMLAAGVPLPLAVVACVLLVGALGVVLERFALRPVGSHAIRGIIITIGISVVL FT QGLAVVTWGTDAQSLPAFSGSTPISVYGVSMQPQAFWVLGTSVVLMAVLYVFLTRTYLG FT RSFRACAMNPQAAALMGIPSSVMRGLGFFLSGAVGAIAGIIIAPIALMQYDSGAALGIK FT GFVACIMGGFGNPVGAAAGGLLLGLLEAFSAGYISSGFKNAIAFVLLLAFLLVRPGGLF FT GEFDKVKR" FT misc_feature 42627..43472 FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 5.6e-29" FT misc_feature 42633..42665 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature join(42636..42704,42783..42851,42885..42953,43032..43091, FT 43182..43250,43293..43361,43374..43442) FT /note="7 probable transmembrane helices predicted for FT BB4292 by TMHMM2.0 at aa 7-29, 56-78, 90-112, 139-158, FT 189-211, 226-248 and 253-275" FT CDS 43484..44446 FT /transl_table=11 FT /locus_tag="BB4293" FT /product="branched-chain amino acid transport system FT permease" FT /note="ortholog of Bordetella pertussis (BX470248) BP3719" FT /note="Similar to Streptomyces coelicolor putative branched FT amino acid transport system permease sco7184 or sc8a11.12 FT SWALL:Q9FBZ8 (EMBL:AL391041) (349 aa) fasta scores: E(): FT 8.9e-26, 32.09% id in 324 aa, and to Burkholderia cepacia FT putative channel-forming polypeptide SWALL:Q8VUC2 FT (EMBL:AF169302) (314 aa) fasta scores: E(): 1.7e-24, 34.06% FT id in 317 aa" FT /db_xref="GOA:Q7WFI0" FT /db_xref="InterPro:IPR001851" FT /db_xref="UniProtKB/TrEMBL:Q7WFI0" FT /protein_id="CAE34656.1" FT /translation="MKKLPLVLTLALLAAVYSTGNAYLINLFVVCAIYALPAIGLSLLV FT GHCGQISLGHAAFVGIGAYAAAIASQRWDMDPWLAVLFAAALACAAAWAVGKLVFRLRG FT HHLAMATLALGMIVHTVLVEWHDVTGGPDGISVAGVLKVGSLELASDPAFFVLGWLAVI FT VALILADNLIRSPFGLALRVVGESELVAGSIGIAPARVKQLIMMASGALAGLSGGLYTF FT WMGYISPDPFNVALSIKLLLIVALSGFTGTWRTLVGVFFVVLVSEGMKSFGHLDVILYG FT LLLILTMLFPVQRLGNALRHLLARRANRAKAPVIKANVL" FT misc_feature 43484..43543 FT /note="Signal peptide predicted for BB4293 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.426 between residues 20 and 21" FT misc_feature 43541..44380 FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 6.9e-07" FT misc_feature join(43547..43615,43634..43687,43715..43783,43802..43861, FT 43919..43987,44096..44164,44207..44275,44294..44362) FT /note="8 probable transmembrane helices predicted for FT BB4293 by TMHMM2.0 at aa 22-44, 51-68, 78-100, 107-126, FT 146-168, 205-227, 242-264 and 271-293" FT CDS 44443..46041 FT /transl_table=11 FT /locus_tag="BB4294" FT /product="branched-chain amino acid transport ATP-binding FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3718" FT /note="Similar to Agrobacterium tumefaciens ABC FT transporter, nucleotide binding/ATPase protein rbsa or FT atu6069 or agr_pti_138 SWALL:Q8U666 (EMBL:AE009425) (528 FT aa) fasta scores: E(): 5.8e-23, 29.98% id in 527 aa, and to FT Rhizobium meliloti putative ABC transporter ATP-binding FT protein r02257 or smc01645 SWALL:Q92NE8 (EMBL:AL591790) FT (543 aa) fasta scores: E(): 2.6e-20, 27.82% id in 539 aa" FT /db_xref="GOA:Q7WFH9" FT /db_xref="HSSP:1JI0" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WFH9" FT /protein_id="CAE34657.1" FT /translation="MNSSAIMLDVQRVGIRFGGLQALDDVSFQVRRGEILALIGPNGAG FT KSTLLNIVSGALAPGQGKVCFENEDVTGLPAHEVNVRGLARTFQAAEILTALTVRENVM FT AAGVRRSGSGFLAGLAGLGWKTGTAQTLSEQAMMHLKTVGMAALADTSAAQLTAGQQRL FT LAAARALASGARLLYLDEPGAGLNSVEKDMLAGAIEQIRANGATVVFVEHDLAFVGRLA FT DRIVVLNHGRILAQGEAAAVRADPAVIAAYLGNTEIRPGLRPEAANAEAATVLEIDRLS FT VRYGALQALSDVSLQVRQGEIVSLIGANGAGKSTLLKAVAGLLRPQAGRIAFRGADLAG FT VPAEARTGAGIALAPEGRSLFPSLTVRENLMMGHYACVRRGGVMQLLAPRRETVAAMNQ FT VMEEITALFPRLAERMHQQAGTLSGGEGQMLAIGRALMSRPQLLMLDEPSFGLAPQIAR FT EILESLPRLTERGLTVLLIEQNARAALQVSDRGYVLVNGRLVAQDTSASLLARSDIGEA FT FLGWEGADTPTRRQA" FT misc_feature 44539..45135 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.5e-45" FT misc_feature 44560..44583 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 45340..45933 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 8.5e-48" FT misc_feature 45361..45384 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 46038..47261 FT /transl_table=11 FT /locus_tag="BB4295" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3717" FT /note="Similar to Escherichia coli hypothetical protein FT ylbe ylbe or b0519 SWALL:YLBE_ECOLI (SWALL:P77129) (419 aa) FT fasta scores: E(): 3.2e-27, 32.27% id in 409 aa, and to FT Salmonella typhi hypothetical protein Sty0578 sty0578 FT SWALL:Q8Z8Q2 (EMBL:AL627267) (415 aa) fasta scores: E(): FT 8.9e-27, 31.29% id in 409 aa" FT /db_xref="InterPro:IPR009499" FT /db_xref="UniProtKB/TrEMBL:Q7WFH8" FT /protein_id="CAE34658.1" FT /translation="MNSPDTLDPRDAAAWRAVTAVRPVLAGLLPAREAFAYPQRTLLHA FT GPPLPGDGEIPWPMLNSIVNAALYEGWAVDRADALYGVRTGAIRLAPAQDHRCVVPLAA FT ILSPSQHVQVVRDAAGRAAPCHAALNGGNRWPIRLGRPETEVAEHLRWLNGPFAEQLRA FT GCEAGIDLVELADQALAAGDDCHGRTLAGTQALAASLRALGHAPEDGAVADYLAQSPGF FT FLNLWMAASKCMLSAAEGMAGSSLVTAMGGNGREAGIQLAALPGRWFSRRCGAPRGALE FT PGLSGAQPLPAIGDSAVVEALGLGAMAMAHSPAQQQALGAYMPEPAAALGAALLGPAHP FT AFERSHPRMGLAARAVAATGKAPVVALGMLDSLGTAGRIGGGIWTADPGLFAHALEFMA FT QHQQGESR" FT CDS 47258..48403 FT /transl_table=11 FT /locus_tag="BB4296" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3716" FT /note="Similar to Streptomyces coelicolor putative branched FT amino acid binding secreted protein sco7185 or sc8a11.13 FT SWALL:Q9FBZ7 (EMBL:AL391041) (396 aa) fasta scores: E(): FT 1.8e-24, 29.91% id in 361 aa, and to Ralstonia solanacearum FT probable amino-acid-binding periplasmic rsc3329 or rs02563 FT SWALL:Q8XU64 (EMBL:AL646074) (382 aa) fasta scores: E(): FT 1.2e-22, 28.16% id in 387 aa" FT /db_xref="GOA:Q7WFH7" FT /db_xref="InterPro:IPR000709" FT /db_xref="UniProtKB/TrEMBL:Q7WFH7" FT /protein_id="CAE34659.1" FT /translation="MKLWKIMAVAALAAGPAHVALGQDIKIGALLETSGAIASLGQPTL FT EGAQLAIDQANAAGGIQGRKIVLVNVNSESDNTKTVSGARRLLSQEKVSAVIGPVSSGS FT NFAVADVIERAKVPMIANGASRGIVLPPEKRRYTFIAPLTDEIVQTVMLRDMQARHITK FT VAMLHSDVAFGTNGRDTLNRLAAQYGVQVVATETFGHADTDMTPQLTKLRGSPAQAIVI FT WATGPGLAIATRNHRALAIDTPLYLTHAANDFNYLRLAGEAANDILLPSSKLYVAGSLP FT SDDAQKAGLQSFVAAYTKKYGKPPATFSGNGYDSANLLLQAMRAAGSDPAALRAQLEKG FT ERYVGVTAIYAYGPEDHFGAKAESVRMLTVSNGAFELAAAP" FT misc_feature 47258..47323 FT /note="Signal peptide predicted for BB4296 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.797 between residues 22 and 23" FT CDS complement(48419..49333) FT /transl_table=11 FT /locus_tag="BB4297" FT /product="LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3715" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator pa0218 SWALL:Q9I6S0 FT (EMBL:AE004459) (306 aa) fasta scores: E(): 2e-29, 34.42% FT id in 305 aa, and to Rhizobium loti transcriptional FT regulator mll7443 SWALL:Q986A7 (EMBL:AP003011) (303 aa) FT fasta scores: E(): 2.9e-20, 29.96% id in 287 aa" FT /db_xref="GOA:Q7WFH6" FT /db_xref="HSSP:1IXC" FT /db_xref="InterPro:IPR005119" FT /db_xref="UniProtKB/TrEMBL:Q7WFH6" FT /protein_id="CAE34660.1" FT /translation="MRAPDFSLRQLSYFLAAAECESVQQAAQALHVSAPAVSTAIAHLE FT ALLGVQLFRRRHARGLILTEQGSAFAVQCRGILQEAWGLGSLQGRGELHGQVRVGCLTT FT FAPFVIPPLLTRVQQHLPGVRLAWFEGHHEYLLEGLRTGTLDIAVLYDFEIPSGIKLVA FT LRAAPLQVVLPASHALAAKETLATSDLNTEPLILLDLPRTREYMLTAFSSNGAIPRIAH FT SVLSINMLLGMVAAGHGFSLLNFCPPNALPGMGGIVSRAFESHVRQPNIVAAYSFRYHY FT PRAAAAIVEHISELVDELVIQAH" FT misc_feature complement(48443..49066) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 7.6e-36" FT misc_feature complement(49130..49312) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.4e-19" FT misc_feature complement(49178..49270) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 49456..50247 FT /transl_table=11 FT /locus_tag="BB4298" FT /product="putative zinc-binding dehydrogenases" FT /note="ortholog of Bordetella pertussis (BX470248) BP3714" FT /note="Similar to Thermus thermophilus probable quinone FT oxidoreductase SWALL:BAB92082 (EMBL:AB085185) (302 aa) FT fasta scores: E(): 4e-07, 30.7% id in 228 aa, and to FT Myxococcus xanthus putative oxidoreductase SWALL:Q8VQC9 FT (EMBL:AF457462) (325 aa) fasta scores: E(): 9.4e-06, 27.08% FT id in 240 aa" FT /db_xref="GOA:Q7WFH5" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7WFH5" FT /protein_id="CAE34661.1" FT /translation="MTIGIAPMPSPRLRVRVQACLGDAGGLRLPGVAFIGSAGPGRRVA FT ALATQAAAPGADIEIDAGQAWTVADGLDEQSALLLAVLWPSAWIALVEIGGLRAGQQVL FT VHEADTPLGLLATVLARQADASVIAAARTAGGIAAALRAGAAEGVLYGDPWPELAREHG FT GADLVFDPGAGRYAVASLPCARRRARMLALDMHDGPAGPPIGAAQLLRRQTSLAAAGWD FT LVRDAPALQRACRALPPHWPRIAALLPLRPLSLSTSQEALP" FT misc_feature 49459..50238 FT /note="HMMPfam hit to PF00107, DE Zinc-binding FT dehydrogenase, score 0.0045" FT CDS 50244..51548 FT /transl_table=11 FT /locus_tag="BB4299" FT /product="putative amidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3713" FT /note="Similar to Bradyrhizobium japonicum malonamidase e2 FT SWALL:Q9ZIV5 (EMBL:AF012735) (414 aa) fasta scores: E(): FT 2.2e-40, 39.15% id in 401 aa, and to Rhizobium meliloti FT putative amidase ra0756 or sma1377 SWALL:Q92YV7 FT (EMBL:AE007262) (471 aa) fasta scores: E(): 7e-29, 34.43% FT id in 395 aa" FT /db_xref="GOA:Q7WFH4" FT /db_xref="InterPro:IPR000120" FT /db_xref="UniProtKB/TrEMBL:Q7WFH4" FT /protein_id="CAE34662.1" FT /translation="MTSLHRAPPLSAHTTRAAVLDGHASAELLEPCLAAIRAHEPVVRA FT WRELDVDAARAQARRLDTHAARGLLAGVPIAVKDIFLTEQFPTRYGSPIYEHGIAGTDA FT DCVARARAAGALVLGKTVTTEFAYFTPGPTANPRDPSRTPGGSSSGSAAAVAAGMVPLA FT FGSQTAGSLIRPASYCGVFALKPTHGLHSLAGAKAMAPSLDTLGWLARDAGDLELMRCA FT LAGEDYRPLPDARPAALRLGICLTHEWHAIEPDGAQAFAHAQVLCTAAGAQLAPLVLPD FT ALQGLMQAQQTIMAYEAARSLAAEWRDARARLSPAMQALIEAGLGCDAQSYAQALALAA FT RGRAHLEHAMRDLDAVIAPAAPGEAPPGLARTGDPIFSRVWTLLGLPCVNVPGLAGPHG FT MPIGVQLVGRPGDERRLLAVAAALHRVFHPTGAPQ" FT misc_feature 50322..51494 FT /note="HMMPfam hit to PF01425, DE Amidase, score 1.1e-80" FT misc_feature 50583..50606 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 51545..52489 FT /transl_table=11 FT /locus_tag="BB4300" FT /product="putative oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3712" FT /note="Similar to Pseudomonas sp. CA10 reductase component FT SWALL:Q9AQN2 (EMBL:AB047548) (315 aa) fasta scores: E(): FT 8.5e-45, 49.13% id in 289 aa, and to Caulobacter crescentus FT vanillate O-demethylase, reductase subunit cc2394 FT SWALL:Q9A5Q3 (EMBL:AE005908) (316 aa) fasta scores: E(): FT 7.6e-36, 42.81% id in 306 aa" FT /db_xref="GOA:Q7WFH3" FT /db_xref="HSSP:1GVH" FT /db_xref="InterPro:IPR000951" FT /db_xref="UniProtKB/TrEMBL:Q7WFH3" FT /protein_id="CAE34663.1" FT /translation="MKLVVRAVTPLTAEIRHFELAASDGAALPAYTPGAHLSVHVVLPD FT GTPARREYSLLGDGSATASYEIAVQCREPAAGSAWMHRLAPGDRIEAEAPVNAFALAAD FT AAEHVLIAGGIGITPILSMARHLRGAGAAFTLHYAGRARAAMAFAEEAAAMGAACRLYH FT DDGAPLHEALPNILAAPAPGRHLYVCGPRALIADTVDGAAAAGWPPASVHYELFQGALA FT LRGDQPFDLVLRQSGITVSVPAGQTMLDALLQAGVEPLYDCRRGECGMCLTPVLEGKPD FT HRDHYLSPREREAGDAVCVCVSRACGASLTLDL" FT misc_feature 51548..51847 FT /note="HMMPfam hit to PF00970, DE Oxidoreductase FT FAD-binding domain, score 0.00027" FT misc_feature 51857..52147 FT /note="HMMPfam hit to PF00175, DE Oxidoreductase FT NAD-binding domain, score 0.0028" FT misc_feature 52235..52465 FT /note="HMMPfam hit to PF00111, DE 2Fe-2S iron-sulfur FT cluster binding domain, score 3.4e-08" FT misc_feature 52331..52357 FT /note="PS00197 2Fe-2S ferredoxins, iron-sulfur binding FT region signature." FT CDS 52603..53337 FT /transl_table=11 FT /gene="nudC" FT /locus_tag="BB4301" FT /product="NADH pyrophosphatase" FT /EC_number="3.6.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3711" FT /note="Similar to Escherichia coli NADH pyrophosphatase FT NudC or b3996 SWALL:NUDC_ECOLI (SWALL:P32664) (257 aa) FT fasta scores: E(): 3e-27, 46.38% id in 166 aa, and to FT Pseudomonas aeruginosa NADH pyrophosphatase NudC or pa1823 FT SWALL:NUDC_PSEAE (SWALL:O86062) (278 aa) fasta scores: E(): FT 5.1e-35, 51.87% id in 187 aa" FT /db_xref="GOA:Q7WFH2" FT /db_xref="InterPro:IPR020084" FT /db_xref="UniProtKB/TrEMBL:Q7WFH2" FT /protein_id="CAE34664.1" FT /translation="MRESGVDLPDGDTCAQVGVRFELMQQIWLTHDPQLRTTHVARDTV FT APPGYAFRKLRALLSELGERAPLAGRAFQIAEWVRTHRYCGVCATPMQHARHELCLQCP FT ACGLHAYPRVSPAMMVLIKRGEHILLARHARYATARYTALAGFVEAGESIEDAVHREVE FT EEVGLRVRDLRYFGSQSWPFPHSLMIAFTAEYAGGDLRVQEDEITEARWFGPGEPLPDI FT PMRESIAGRLVRANLPPGMASD" FT misc_feature 52936..53304 FT /note="HMMPfam hit to PF00293, DE NUDIX domain, score FT 4.9e-22" FT misc_feature 53038..53097 FT /note="PS00893 mutT domain signature." FT CDS complement(53362..54030) FT /transl_table=11 FT /locus_tag="BB4302" FT /product="TetR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3710" FT /note="Similar to Deinococcus radiodurans transcriptional FT regulator, tetr family dr2376 SWALL:Q9RRV9 (EMBL:AE002068) FT (197 aa) fasta scores: E(): 2.6e-09, 28.71% id in 195 aa, FT and to Mycobacterium tuberculosis hypothetical 24.1 kDa FT protein rv0158 or mtv032.01 or mt0167 SWALL:O53641 FT (EMBL:AL021927) (214 aa) fasta scores: E(): 3.7e-08, 29% id FT in 200 aa" FT /db_xref="GOA:Q7WFH1" FT /db_xref="InterPro:IPR012287" FT /db_xref="UniProtKB/TrEMBL:Q7WFH1" FT /protein_id="CAE34665.1" FT /translation="MLLTPELENWVGIDYDDMPAVQRKLLDAAAKAFTTYGFAATSIDV FT IASQIGATKGSVYYHYRSKTDLFFAVHKCAMVMNLKAQVPVAFDASLDPRAKLYRMAYL FT HAMLMMDSLYYQRVTVQGVELHQSVSTTPMEREALAEVIAMRDIYEGLFSQVVRDGMAS FT GHFAEADHSIAAKGILGILNWITVWYRPRETESPGFRQRVATQLATQAIQGIARADTRG FT " FT misc_feature complement(53818..53958) FT /note="HMMPfam hit to PF00440, DE Bacterial regulatory FT proteins, tetR family, score 7.3e-15" FT CDS 54357..55550 FT /transl_table=11 FT /locus_tag="BB4303" FT /product="putative racemase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3709" FT /note="Similar to Rhodococcus sp. AD45 putative racemase FT isoG SWALL:Q9RBP6 (EMBL:AJ249207) (405 aa) fasta scores: FT E(): 3.1e-50, 38% id in 400 aa, and to Streptomyces FT coelicolor putative racemase sco0362 or scf41.21 FT SWALL:Q9RJU8 (EMBL:AL117387) (403 aa) fasta scores: E(): FT 3.6e-41, 37.81% id in 402 aa" FT /db_xref="GOA:Q7WFH0" FT /db_xref="HSSP:1Q7E" FT /db_xref="InterPro:IPR003673" FT /db_xref="UniProtKB/TrEMBL:Q7WFH0" FT /protein_id="CAE34666.1" FT /translation="MDGPLSGVRVLDMTAALSGPVATQILGDMGAEVIKIEPPEGDSIR FT DLGPARHRGMGAMFLHTNRSKRSIVLDLKLEGGRDAFRRLAGAADVFVCNTRPKAMARL FT GLAYADIAALNPALVYLNIVGYGSAGTHADKPAYDDLIQAAAGIASLRADGDPARYAPI FT ALADRVTGILAANAVLGALYHRARTGAGQHIEVPMFESIASLVLADHMAGLSFEPPIGP FT PVFDRYASIRRPFQTRDGFLCMMVLTDRQWREFFRAVGRPEVMDDDRFGTMAQRTRNLE FT ALYAIVSAIMATRDTDAWVAHLEAADIPVARIESVASLTAHPHLAQAGFFQTVEHPTEG FT PIRSMACASTWSATQPAPTRPAPRLGEHSLEILREAGFSEEQTQAMFASGAARGYES" FT misc_feature 54561..55121 FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 5e-28" FT CDS 55547..56551 FT /transl_table=11 FT /locus_tag="BB4304" FT /product="putative zinc-binding dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3708" FT /note="Similar to Ralstonia solanacearum probable FT oxidoreductase protein rsc1203 or rs02677 SWALL:Q8Y041 FT (EMBL:AL646063) (324 aa) fasta scores: E(): 6.5e-45, 42.77% FT id in 332 aa, and to Pseudomonas aeruginosa probable FT oxidoreductase pa5234 SWALL:Q9HTV6 (EMBL:AE004936) (325 aa) FT fasta scores: E(): 2.8e-43, 40.18% id in 331 aa" FT /db_xref="GOA:Q7WFG9" FT /db_xref="HSSP:1IYZ" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7WFG9" FT /protein_id="CAE34667.1" FT /translation="MKAVVCREYGGPDVAAYEEVPAPALAPGAVRIQVQACSASFASLL FT VMEGKHQNRAPLPLIPGTEVAGVVTELGAGATRFRVGDRVIAGVQSGGYAQEVVAPEAT FT VFELPADVPFETGAQFPTIYGTAYGALQWRAQVEPGEVVLVHGAAGGSGLAAVEVAKAL FT GATVIATVGSDAKQAIVREHGADHAINYRTQDWRAEVLRLTGQRGADVIYDPVGGETFD FT ASLRCIAPDGRIIPMGFASGAIPTVPANIVLVKNISILGVYWGYYFGWGRHPVKPGNDA FT RLRAAYARLFEWTRQGRIRPRAHAVVPLADFRTALRMIASREAIGRIVMQPQQ" FT misc_feature 55571..56542 FT /note="HMMPfam hit to PF00107, DE Zinc-binding FT dehydrogenase, score 4e-80" FT CDS 56604..57569 FT /transl_table=11 FT /locus_tag="BB4305" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3707" FT /note="Similar to Rhizobium meliloti hypothetical protein FT ra1058 ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 FT aa) fasta scores: E(): 7e-37, 37.29% id in 311 aa, and to FT Comamonas testosteroni Orf4 protein orf4 SWALL:Q9S155 FT (EMBL:AB024335) (325 aa) fasta scores: E(): 8.4e-35, 36.99% FT id in 319 aa" FT /db_xref="GOA:Q7WFG8" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7WFG8" FT /protein_id="CAE34668.1" FT /translation="MFKRIALMGAAAMLAAAPAVHAQDKYPSRPITLVSPYQAGGTTET FT FARLIIDDVAAILGQPIVVEQKPGAAGTIGARFVATSKGDGYTLLANTSQHVMYEGMFK FT NLPFRPMEDFRPVGVLGSAPIIVVTGENSPYKTFKDVLEAARTRNLTFASGAQGSLPHL FT TGERVAVQGKLNMTHVPFSGTAPALTNVMGGHVDLLYSTAASVMSQIRAGKLRALAVST FT KERMPELPDVPSIAEMGMPGFDVTAWYAVWAPKDTRPEVVDAINQAMREASARPEAKKR FT MAALSVTPSTLTAAQFAAFAESERKTWLDVMRRANMQPAN" FT misc_feature 56604..56669 FT /note="Signal peptide predicted for BB4305 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 22 and 23" FT misc_feature 56739..57554 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 9.4e-77" FT CDS 57571..58344 FT /transl_table=11 FT /locus_tag="BB4306" FT /product="putative enoyl-CoA hydratase/isomerase family FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3706" FT /note="Similar to Clostridium acetobutylicum FT 3-hydroxybutyryl-CoA dehydratase crt or cac2712 FT SWALL:CRT_CLOAB (SWALL:P52046) (261 aa) fasta scores: E(): FT 2.9e-25, 39.92% id in 253 aa, and to Thermoanaerobacter FT tengcongensis enoyl-CoA hydratase/carnithine racemase caid FT or tte0544 SWALL:Q8RC92 (EMBL:AE013024) (260 aa) fasta FT scores: E(): 2.8e-28, 38.28% id in 256 aa" FT /db_xref="GOA:Q7WFG7" FT /db_xref="HSSP:1HZD" FT /db_xref="InterPro:IPR018376" FT /db_xref="UniProtKB/TrEMBL:Q7WFG7" FT /protein_id="CAE34669.1" FT /translation="MARADDIEVRVADQVAWVTINRPQRMNALARATFAQLVEVSLELD FT QDPGVKVVVYTGAGERAFSAGVDLKELDAAGRMTHPMGGPARNLNEVVLEMATPTIAAI FT NGVAAGGGCELALACDIRVAASTARIGLPEARVGMGANFGSVVLPQLIPRGVALELLYT FT GELIDMALAHRLGLVNHVFEPAELMAQTAGLARRIADNAPLSVQRMKAMAFKSIGLPTA FT AALRLSVGPDPYNSEDRLEGARAFVEKRKPRFQGR" FT misc_feature 57616..58119 FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 3.5e-44" FT misc_feature 57871..57933 FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS 58831..59730 FT /transl_table=11 FT /locus_tag="BB4307" FT /product="ABC transporter ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3705" FT /note="Similar to Rhizobium loti ATP-binding protein of ABC FT transporter mll1253 SWALL:Q98KZ4 (EMBL:AP002997) (267 aa) FT fasta scores: E(): 4.9e-42, 49.07% id in 271 aa, and to FT Methanococcus jannaschii hypothetical ABC transporter FT ATP-binding protein Mj0412 mj0412 SWALL:Y412_METJA FT (SWALL:Q57855) (267 aa) fasta scores: E(): 8.3e-42, 45.88% FT id in 255 aa" FT /db_xref="GOA:Q7WFG6" FT /db_xref="HSSP:1G29" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WFG6" FT /protein_id="CAE34670.1" FT /translation="MNAQVNTFTPLPCTEPGKSGAPPRPGASQDNQVKISFQGVSKTYG FT GRGRSGNRTLALDRMDVDIKAAEIVTVLGPTGCGKSSTLNLIAGFEQTSTGSLLIDGKP FT IDGPGPDRAVVFQQPSLFPWLTVMENITLGVKCRGVPKDTYEPRAQMLLREVGLSGFEK FT HYPYQLSGGMQQRVQIARALISEPKVLLLDEPFGALDYQTRILMQELLLQLWQEHKPTI FT FFITHDVSEAIFVADRVLVMSHRPGRIKLAVNVDADKPRNADFLSTPEFISLQRDLLHA FT VQEEVHANKNRPPMAKAA" FT misc_feature 59029..59565 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.8e-59" FT misc_feature 59050..59073 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 59335..59379 FT /note="PS00211 ABC transporters family signature." FT CDS 59757..60809 FT /transl_table=11 FT /locus_tag="BB4308" FT /product="putative transport system periplasmic protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3704" FT /note="Similar to Bacillus subtilis putative aliphatic FT sulfonates binding protein precursor ssuA SWALL:SSUA_BACSU FT (SWALL:P40400) (332 aa) fasta scores: E(): 7.9e-10, 28.75% FT id in 240 aa, and to Brucella melitensis aliphatic FT sulfonates-binding lipoprotein bmeii0109 SWALL:Q8YDR6 FT (EMBL:AE009649) (319 aa) fasta scores: E(): 5.6e-09, 26.33% FT id in 262 aa" FT /db_xref="UniProtKB/TrEMBL:Q7WFG5" FT /protein_id="CAE34671.1" FT /translation="MQSCLRLAASLLSAALLCLPAPGAAQTASPAKKELLKFNWGAPTA FT DYYALYVAKDQKLFEEVGLEPNFYFFPSGAPLLAGLKSKSLDVITTGLATVFALGQNVP FT LKLIYWELDHAAAEGLVVDPAAGIKSYKDIAKAKAIGAPSGTCAQVSLVLMAKELNLKY FT SDLNIINIAPPLYGNAFKSKSIQAAVAWSPYSSILNADQLPVVNWASDYTPDQGVCPGL FT TGVRTEFMQQHPDIGLKLVQVQAKAMDMIRKDPELGIGVLMKYLSVSREVAKHIYDREF FT SRIPTYAQQIDPASPYSLAAKDAGLARKLLIASQALAEVGTIPAPLTPQAIAEAIDPSA FT IQRYMKGERK" FT misc_feature 59757..59831 FT /note="Signal peptide predicted for BB4308 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.688 between residues 25 and 26" FT CDS 60806..61603 FT /transl_table=11 FT /locus_tag="BB4309" FT /product="putative transport system permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3703" FT /note="Similar to Escherichia coli taurine transport system FT permease protein tauc tauc or ssic or b0367 FT SWALL:TAUC_ECOLI (SWALL:Q47539) (275 aa) fasta scores: E(): FT 3.9e-34, 36.32% id in 256 aa, and to Escherichia coli FT O157:H7 taurine transport system permease protein tauc or FT z0466 or ecs0421 SWALL:Q8X5I4 (EMBL:AE005216) (275 aa) FT fasta scores: E(): 5.9e-34, 36.32% id in 256 aa" FT /db_xref="GOA:Q7WFG4" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7WFG4" FT /protein_id="CAE34672.1" FT /translation="MSERVAVEGRQPAISPTVFSVASVVGLLAIWTLVTNLGLVGPGYL FT PSPQAMFAQLVTLVEQGYGGKPLWDHVGASLFRALVGFAIGVLAGVPFGLFSGYHKAVG FT AMMSPIMAFIRPIPPIAFIPMAVLYFGLGEMGKVVLIVFTAFNYSFVSAQAGALSVPMS FT YYRAAESIGMTKLQIFWRVVFPSSIPHIFTGLKVAMALSWAVVVAAELVGAQKGLGFMI FT SDAAQLFQIPVVFIGIALIGLIGLVLNVMLTVAEEKIVHWKGR" FT misc_feature join(60842..60910,61031..61099,61136..61204,61217..61285, FT 61376..61444,61487..61555) FT /note="6 probable transmembrane helices predicted for FT BB4309 by TMHMM2.0 at aa 13-35, 76-98, 111-133, 138-160, FT 191-213 and 228-250" FT misc_feature 61271..61486 FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 2.2e-11" FT CDS 61665..62456 FT /transl_table=11 FT /locus_tag="BB4310" FT /product="GntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3702" FT /note="Similar to Ralstonia solanacearum probable FT transcription regulator protein rsp1506 or rs03035 FT SWALL:Q8XPY0 (EMBL:AL646085) (240 aa) fasta scores: E(): FT 3e-10, 26.33% id in 224 aa, and to Ralstonia solanacearum FT probable transcription regulator protein rsc1997 or rs03565 FT SWALL:Q8XXW6 (EMBL:AL646067) (274 aa) fasta scores: E(): FT 5.9e-08, 23% id in 213 aa" FT /db_xref="GOA:Q7WFG3" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WFG3" FT /protein_id="CAE34673.1" FT /translation="MDTDAIRSEIFGQLARPDNSGIPKYRRLSNILVEAIRRGVWQPGD FT RLPAEEQLTEMTPFSLGTVQRALRALTDEGLVIRMQGHGNFVADQQRQMADPWHCRFLD FT DESDGIVPIYSKAVQRAVVTPSETGPWQRYLHSGSVMRLDRIINVNDEFRIFSRFYADR FT ELLQPLWHVPLEELDGANFKDIIMRQVGLPITEIDRSVRIRRIDAQAARLIGVAPEATV FT LFMQAVARAGRDACIYYQEFYIPETGRALQLPEQRPRVHGR" FT misc_feature 61746..61925 FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 1.1e-12" FT CDS 62509..63558 FT /transl_table=11 FT /locus_tag="BB4311" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3701" FT /note="Similar to Brucella melitensis aliphatic FT sulfonates-binding lipoprotein bmeii0109 SWALL:Q8YDR6 FT (EMBL:AE009649) (319 aa) fasta scores: E(): 2.4e-13, 28.12% FT id in 256 aa, and to Bacillus subtilis putative aliphatic FT sulfonates binding protein precursor ssuA SWALL:SSUA_BACSU FT (SWALL:P40400) (332 aa) fasta scores: E(): 2.5e-12, 28.88% FT id in 270 aa" FT /db_xref="GOA:Q7WFG2" FT /db_xref="InterPro:IPR007210" FT /db_xref="UniProtKB/TrEMBL:Q7WFG2" FT /protein_id="CAE34674.1" FT /translation="MTSKQGRHTAFLTKAAAAAVLAAGSAASLAADPPKPLKINYGAPT FT ADYYTLYVAKDHGLFEKHGLEPNFFWFASGAPLLAGLKSESLDVFTTGLASAFALGQNL FT PVKLLFWQLDDAPGQGLVVSKDSGIDSYRDLKKAKAIGTPSGTCAQVALGLMARKAGIA FT MKELNVVNIAPPLYANAFTSNSIDAGVTWAPYLQSVAERGYKIVNYDTDYDGICPVMTG FT ARTKFLQEHPDVGLKLVQISAEAQRMVADNPQLAIDVLEKYLKVSPAVAKATYERLCCG FT NFPTFRQQADPESPYSLVSDKGIVAKLHTATQILAEAGTIPQAISRETVAASIDASYVR FT QYLATQPGQ" FT misc_feature 62509..62598 FT /note="Signal peptide predicted for BB4311 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.991 between residues 30 and 31" FT CDS 63739..64731 FT /transl_table=11 FT /locus_tag="BB4312" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3700" FT /db_xref="GOA:Q7WFG1" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7WFG1" FT /protein_id="CAE34675.1" FT /translation="MRSISLHLRRALAVLGLAGIAAAAPLHAAETWPDRPVRLIVPYPA FT GGGVDFAARLIASDLSKQTGQNFIVENRTGAAGTIGAQAVVQSTADGNTVLFASPAEVL FT VSRIAGQKTSYDAGKDLQPVTLAGETPLAVVVNPAVPARTLAELVALARKDPSAISYGT FT PGTGSTMQFAGEALNLAAGIKMLHVPYRGAAPAIADLLGNQIPVAIVGVPPLVAHHKSG FT KLRILAVTGSQRIAALPDVPTVAQELGVADYRYTNRFGVYVPGNTPAAVGDRLAALIHA FT SVHRDAIKAQLAEQGVEPIGNTTPEFVRFLAGEKARYETVQRKSGIQMD" FT misc_feature 63739..63822 FT /note="Signal peptide predicted for BB4312 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 28 and 29" FT misc_feature 63892..64719 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.9e-69" FT CDS complement(64744..65574) FT /transl_table=11 FT /locus_tag="BB4313" FT /product="GntR family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3699" FT /db_xref="GOA:Q7WFG0" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WFG0" FT /protein_id="CAE34676.1" FT /translation="MLMNTSLRRSTPAGGQIVVNAERPAVFDQLHRPNYSGIPKYRLVL FT NAIAEGIESGHWKPGERLPTEDDLVQMTSYSLGTVQRALRILVDQGLVVREHGLGTFVA FT QQQLRIQDPWHCRFLADDGVGFLPVYSTIISRDYASGEGEWQRYFDTAAGAQVILIERT FT INVGNEFEVFTRFYVDRNVFPSLWDTPMEKLNGLNFKKQITQELNVPVTKIDHFVAMEP FT FDPTVAGYTKTPPYAAGIALQVVACMGQERCIYYQKFFIPPTKRVLSIPDQLTD" FT misc_feature complement(65266..65445) FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 1.7e-14" FT CDS complement(65628..66689) FT /transl_table=11 FT /locus_tag="BB4314" FT /product="putative inner membrane transport protein" FT /db_xref="GOA:Q7WFF9" FT /db_xref="InterPro:IPR004695" FT /db_xref="UniProtKB/TrEMBL:Q7WFF9" FT /protein_id="CAE34677.1" FT /translation="MTASTARPRSRVAAPIRHAMQTQTGLPAALPPAGATFLAGFPVSM FT FASVLGLSGLGMAWRKAHQVWGLPLQVALAIQVAVAAVYGVLLALFLLRLLRHPDEIAR FT EWNHPVQLAFFSAISLGVVLIGTAWADDAPRAAAALWWLGATVHLGFTLVIVRSWIFHT FT HYQLDHVNPSWFVPVVGNIVIPIAGVRFAPAECAWFFFSLGIVFWIVLKAIILYRLMFG FT APLARALTPTLFIMIAPPAVAFLAYMALTGSLDGFARVLYYISLFWTLLLSTAAPRFAR FT LPFSLAAWSYSFPLAAITLATFSFAEHSGHALAFHTLAGFLVAVLSTVLVLLTGATVRG FT LLNGALADARGGA" FT misc_feature complement(join(65661..65729,65772..65840,65859..65912, FT 65940..66008,66027..66095,66108..66176,66210..66278, FT 66306..66365,66402..66470,66513..66581)) FT /note="10 probable transmembrane helices predicted for FT BB4314 by TMHMM2.0 at aa 37-59, 74-96, 109-128, 138-160, FT 172-194, 199-221, 228-250, 260-277, 284-306 and 321-343" FT misc_feature complement(65763..66569) FT /note="HMMPfam hit to PF03595, DE C4-dicarboxylate FT transporter/malic acid transport protein, score 1.7e-35" FT CDS complement(66686..68143) FT /transl_table=11 FT /locus_tag="BB4315" FT /product="putative sulfatase" FT /db_xref="GOA:Q7WFF8" FT /db_xref="HSSP:1E33" FT /db_xref="InterPro:IPR017849" FT /db_xref="UniProtKB/TrEMBL:Q7WFF8" FT /protein_id="CAE34678.1" FT /translation="MKVTPQNMVVIMSDEHQSRALGCYGHEFVHTPNLDALAARGTRFA FT SAYCTSPVCIPARASFATGKYINQIGFWDNADAYDGSVPSWHHMLRDRDHQVVSIGKLH FT FRDYGGDHGFSEEIIPMHIVGGKGDLMGLVRSDLPVRKGAYKMAQMAGPGESQYTFYDR FT EIVSRAQIWLREQAPRHADKPWVLFVSFVSPHFPLTAPPEHYYRYYNRDLPLPKLYDRS FT QRPDHPYQQDYRGSFNYDDYFDPGLVKKAQAGYYGLCSFLDENIGKLLGTLDDLDILDS FT TRVVYTSDHGDNLGARGMWGKSNMFEEAAAVPLIIAGRDIPSGVTVNTPVSHVDVAPFI FT YDAVGETSPGLKEGLPGVSLFQLARGETPQRNVMAEYHGMGSATGAFMIREGRYKYIFY FT VHYPHQLFDLEADPEELEDLAGRPDYADVVALCKQKLWQLCDPVEVDRRARARQAELLE FT HNGGREAVIARGDLGFSPAPGAVHKFD" FT misc_feature complement(66803..68128) FT /note="HMMPfam hit to PF00884, DE Sulfatase, score 4.8e-27" FT misc_feature complement(67235..67258) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(68283..69884) FT /transl_table=11 FT /locus_tag="BB4316" FT /product="putative GMC oxidoreductase" FT /db_xref="GOA:Q7WFF7" FT /db_xref="InterPro:IPR012132" FT /db_xref="UniProtKB/TrEMBL:Q7WFF7" FT /protein_id="CAE34679.1" FT /translation="MDMRTFDYIVVGAGSAGCALAARLVERKAGSVLLLEAGPPDRNMW FT IHIPIGYGKTMFDPRNNWQFYSEPEPELNGRKIYQPRGKTLGGSSSINGLVYIRGQAED FT FDDWARLGNPGWAWQDVLPLFKRAERNERGDSEFHGGAGRLGVSDIRGRHELVEAFIQA FT GQENGIARTNDFNGASQEGVGYFQLTTRGGLRCSAAKGYLGPLKGDANLAIETDAQATG FT VIFEGRRAVGVRYRQRGAAFEARAAKEVILAAGAFQSPQLLMLAGIGDGAQLQAHGIPV FT LHHLPEVGMNLQDHLQVRLIYKCTRPITTNDQLRTLWGRAAIGMRWIFRRAGPVAAGIQ FT LGAMFARACPGATRPDVQFHFGTISADMAAGKPHDFSGFTISMCQLRPRSRGQVSLKSA FT NPLEAPRIQPNYFSAQEDRDTMVAGLRLTRRLTRSRPLAAYIAEEYHPGPRMETEEDMV FT RFVRESGTTIFHPVGTCRMGGDEASVVDPSLRVRGVQGLRVADASIMPLLLSGNTNAGA FT IMIGEKAADLITQARP" FT misc_feature complement(68313..69869) FT /note="HMMPfam hit to PF00732, DE GMC oxidoreductase, score FT 4e-206" FT misc_feature complement(69567..69638) FT /note="PS00623 GMC oxidoreductases signature 1." FT CDS complement(69898..70854) FT /transl_table=11 FT /locus_tag="BB4317" FT /product="putative iron-sulfur oxidoreductase subunit" FT /db_xref="GOA:Q7WFF6" FT /db_xref="HSSP:1GVH" FT /db_xref="InterPro:IPR000951" FT /db_xref="UniProtKB/TrEMBL:Q7WFF6" FT /protein_id="CAE34680.1" FT /translation="MLNLCVRSITYEAEGIRSFELVHPLGKDLPPFEAGAHIDVSIPGG FT FTRQYSLCDPSWQRKHYRIAVLEDRGGRGGSVALHTALRAGDMIEVSEPRNLFPLDSGA FT GHKVLLAGGIGITPVLAMAEALQRSGHSFELHYCTRSPERTAFRERLQTLAAQDKAFFH FT HDMGDPARGLDIAALLARPEPGSQLYFCGPPGFMKAVQAASAHWPQGSVHYEYFGVNPA FT LTEKLAGTGQAAGEVRLAKSDKILAVRPGQTLLQAIREAGVACESSCESGVCGTCKVRY FT FSGQPEHNDYVLSDEERTEFVLVCCAGAGPQALLLDL" FT misc_feature complement(69922..70146) FT /note="HMMPfam hit to PF00111, DE 2Fe-2S iron-sulfur FT cluster binding domain, score 1.1e-06" FT misc_feature complement(70024..70050) FT /note="PS00197 2Fe-2S ferredoxins, iron-sulfur binding FT region signature." FT misc_feature complement(70246..70545) FT /note="HMMPfam hit to PF00175, DE Oxidoreductase FT NAD-binding domain, score 3.3e-05" FT CDS complement(70870..72306) FT /transl_table=11 FT /locus_tag="BB4318" FT /product="putative dioxygenase" FT /db_xref="GOA:Q7WFF5" FT /db_xref="InterPro:IPR015881" FT /db_xref="UniProtKB/TrEMBL:Q7WFF5" FT /protein_id="CAE34681.1" FT /translation="MSTTNAASTEQPLKFAGYRKRDMPAHDAELTSTMPGTPMGEYMRQ FT YWQPVCLSEELRDVPKAIRILGENLVAFRDKSGNIGVMHRHCAHRGASLEFGVIQQHGI FT RCCYHGWHYGVDGTLLEAPCEHDDTRLRQTVCQGAYPAFERDGLVFAYMGPPENQPPFP FT EYDTYTLPKGTKLVPFSNVYPCNWLQVHENIMDHMHTAVLHNHMVVEGVDAEVSAGVTL FT EGFGDMPVMQWHPTRSGNGIVFVAGRRLPQDRVWVRITEMNLPNYLQIGSLVPTAARER FT HSTSGCTRWHVPVDDTNMIIFGWRHFNAEVDPDGMGCEADCGVDKIDFLVGQTGNRSYD FT EAQRAPGDWEALTSQRPIAVHALENPGASDVGVYMFRKLLRDALHGKTKPDPAYAQLLA FT SGQSLPLYAQDSVLYAKQREDTAEDRKLINELGRKVLDIMRAADGLAAAERDAFVRAEL FT DRIDDGVGKQIVAQALAMEA" FT misc_feature complement(71866..72171) FT /note="HMMPfam hit to PF00355, DE Rieske [2Fe-2S] domain, FT score 2.7e-22" FT CDS complement(72368..73822) FT /transl_table=11 FT /locus_tag="BB4319" FT /product="putative aldehyde dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3165" FT /db_xref="GOA:Q7WFF4" FT /db_xref="HSSP:1CW3" FT /db_xref="InterPro:IPR016162" FT /db_xref="UniProtKB/TrEMBL:Q7WFF4" FT /protein_id="CAE34682.1" FT /translation="MENLGYPARLELYVAGQWRGVEGRRTQVVVNPSTQQPLGELPLAS FT VEDIDDALAAADQAFGDWARTTAWERADILQRAAALIEARRDRLAVVLTLENGKPLADS FT HGELDRVVETILWCAEEGKRTYGRVLPARAQRLSQSSLKRPVGPVAAFVPWNFPAVLAA FT RKLAAAMAAGCTVVLKPAEETPAICIELVRAFVDAGTPAGVVNLLYGVPAQVSERLIAS FT PIIRKVSFTGSVAVGRLLASMAAGHLKPATMELGGHAPVVVFDDVDADRVAKMCVGFKY FT RNAGQVCLSPSRFYVHERIADRFAESFVRHAGLLRVGDGMEEGVQMGPLNNVRRLQAAE FT RLVEQAVGAGASLALGGRRIGQRGYFYPPTVLEGVPDAADILAEEPFCPVAPIMRFGSM FT DEVIGRANHPSLGLAAYAFTNRMATSAEFAERIEAGWIGINNFVPALADAPIGGMKDSG FT LGYEGGPEGLDAYLHARFVSQLNVEV" FT misc_feature complement(72383..73774) FT /note="HMMPfam hit to PF00171, DE Aldehyde dehydrogenase FT family, score 1.9e-142" FT CDS complement(74116..74760) FT /transl_table=11 FT /gene="ureG" FT /locus_tag="BB4320" FT /product="urease accessory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3166" FT /db_xref="GOA:P0A4R7" FT /db_xref="InterPro:IPR004400" FT /db_xref="UniProtKB/Swiss-Prot:P0A4R7" FT /protein_id="CAE34683.1" FT /translation="MHDISSLTTRTKTLPPLRVGVGGPVGSGKTTLLEMVCKAMYPQFD FT LIAITNDIYTKEDQRLLTLSGALPPERILGVETGGCPHTAIREDASINLIAIDQMLEQF FT PDADIVFVESGGDNLAATFSPELSDLTLYIIDVASGEKIPRKGGPGITKSDLFIINKTD FT LAPYVGADLAVMEADTRRMRGDKPFVMCNLKTGDGLDQVIAFLKTEGLFRG" FT misc_feature complement(74332..74715) FT /note="HMMPfam hit to PF01495, DE HypB/UreG FT nucleotide-binding domain, score 4.5e-73" FT misc_feature complement(74671..74694) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(74785..75447) FT /transl_table=11 FT /gene="ureF" FT /locus_tag="BB4321" FT /product="urease accessory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3167" FT /db_xref="GOA:Q7WFF3" FT /db_xref="InterPro:IPR002639" FT /db_xref="UniProtKB/Swiss-Prot:Q7WFF3" FT /protein_id="CAE34684.1" FT /translation="MHLSSPALPIGGFSYSQGLEAAIELGLVHDEASTLAWIESQLVTV FT MARAEAPLWCLLFEAWRAGDDAAAHGWNQWFHASRETRELRQETEQMGRSLARLAQELG FT WGTAATRAAVAALRPATLPAVHACACAMWALPREAGLGAYVFSWLENQVAAAIKGVPLG FT QMAGQRMLERLRAGLPAVLADARARAGATPPRLDTFAPQYAMVSARHETQFSRLFRS" FT misc_feature complement(74917..75369) FT /note="HMMPfam hit to PF01730, DE UreF, score 9.7e-74" FT CDS complement(75470..76087) FT /transl_table=11 FT /gene="ureE" FT /locus_tag="BB4322" FT /product="urease accessory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3167A" FT /db_xref="GOA:Q7WFF2" FT /db_xref="HSSP:1GMU" FT /db_xref="InterPro:IPR004029" FT /db_xref="UniProtKB/Swiss-Prot:Q7WFF2" FT /protein_id="CAE34685.1" FT /translation="MKIANTFIKRGAAGGLDLSQAPGVTLTLAERRRSRQRLDLDEGRG FT ELGMAIERGQTLRDGDVLVAEDGTYVVVRAALEDVARVTAATPWQLARAAYHLGNRHVL FT LEIAERHLQFEYDAVLIDMLAQLGGVTATRLRAVFEPDVGAYGGGHRHGHDESFGDDYA FT LAQAAYHAHEAHPHAHSHAGGHGHVHSGHGHGGKHGEHDAES" FT misc_feature complement(75767..76072) FT /note="HMMPfam hit to PF02814, DE UreE urease accessory FT protein, score 1.7e-45" FT CDS complement(76090..77805) FT /transl_table=11 FT /gene="ureC" FT /locus_tag="BB4323" FT /product="urease alpha subunit" FT /EC_number="3.5.1.5" FT /note="ortholog of Bordetella pertussis (BX470248) BP3168" FT /db_xref="GOA:O08400" FT /db_xref="HSSP:1EJX" FT /db_xref="InterPro:IPR017950" FT /db_xref="UniProtKB/Swiss-Prot:O08400" FT /protein_id="CAE34686.1" FT /translation="MTRISRSAYAEIYGPTVVGGVGDRVRLADTLLLAEVEKDHTIFGE FT EVKFGGGKVIRDGMGQSQRLATDCVDTVITNALIIDAVTGIVKADIGIKDGLISGIGKA FT GNPDTQPGVTIIIGASTEVVAGEGLIVTAGAIDTHIHFICPQQIEEALATGTTTMIGGG FT TGPATGSLATTSTSGPWHMAAMLQALDTFPVNVGLFGKGSSSSHGALLEQVRAGAMGLK FT IHEDWASTPASIDTCLNVAEETDIQVAIHSDTLNESGFVEDTFAAFKGRTIHSFHTEGA FT GGGHAPDIIRAAGMPNVLPASTNPTMPFTRNTIDEHLDMVMVCHHLDPSIAEDLAFAES FT RIRRETIAAEDILHDLGAFSIMSSDSQAMGRVGEIVLRTWQTAHKMKLQRGPLQGDSER FT SDNERIKRYIAKYTINPAVAHGIAHLVGSVEVGKLADLVLWKPAFFGVKVNMVLKSGMA FT VSASIGDMGASISTPQPVQIRPMWGSHGKALRTSVAFVSQVSLSNPAVSELGLNKRLEA FT VRGCRGVTKHDMVRNNWLPAISVDPQTYQVYADGQLLRCEALAELPMAQRYFLF" FT misc_feature complement(76096..77403) FT /note="HMMPfam hit to PF02802, DE Urease alpha-subunit, FT catalytic domain, score 0" FT misc_feature complement(76792..76842) FT /note="PS00145 Urease active site." FT misc_feature complement(77371..77412) FT /note="PS01120 Urease nickel ligands signature." FT misc_feature complement(77407..77802) FT /note="HMMPfam hit to PF00449, DE Urease alpha-subunit, FT N-terminal domain, score 4.8e-83" FT CDS complement(77802..78110) FT /transl_table=11 FT /gene="ureB" FT /locus_tag="BB4324" FT /product="urease beta subunit" FT /EC_number="3.5.1.5" FT /note="ortholog of Bordetella pertussis (BX470248) BP3169" FT /db_xref="GOA:P0A4R2" FT /db_xref="HSSP:1EJX" FT /db_xref="InterPro:IPR002019" FT /db_xref="UniProtKB/Swiss-Prot:P0A4R2" FT /protein_id="CAE34687.1" FT /translation="MIPGEILTEPGQIELNVGRPTLTIAVVNEGDRPIQVGSHYHFAEA FT NNALVFDRELATGYRLNIPAGNAVRFEPGMRRTVELVAVGGERRIFGFQGKVMGALK" FT misc_feature complement(77808..78107) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00699, DE Urease beta subunit, FT score 3.2e-60" FT CDS complement(78127..78744) FT /transl_table=11 FT /gene="ureJ" FT /locus_tag="BB4325" FT /product="urease accessory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3170" FT /db_xref="InterPro:IPR007038" FT /db_xref="UniProtKB/TrEMBL:Q7WFF1" FT /protein_id="CAE34688.1" FT /translation="MKAMSKRAMLGSGAAALMLFSGAALAHPGHLGHELPGSMFAAGFW FT HPLTGFDHLLAMLAVGMWSALTHHTARQAVWLPVMFLALLFAGAMMGMAGVRLPAVEPV FT IMVSLLVLGLLVASRKAVQGWAGFALVGGFALFHGLAHGMELPGSEGALGFVAGFMLAT FT LGLHLAGLFAGFRLKHWNLWLSRALGVGIAGYGALLFVGARV" FT misc_feature complement(join(78133..78201,78220..78288,78316..78375, FT 78394..78447,78460..78528,78547..78615,78658..78726)) FT /note="7 probable transmembrane helices predicted for FT BB4325 by TMHMM2.0 at aa 7-29, 44-66, 73-95, 100-117, FT 124-143, 153-175 and 182-204" FT misc_feature complement(78667..78744) FT /note="Signal peptide predicted for BB4325 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 26 and 27" FT CDS complement(78789..79091) FT /transl_table=11 FT /gene="ureA" FT /locus_tag="BB4326" FT /product="urease gamma subunit" FT /EC_number="3.5.1.5" FT /note="ortholog of Bordetella pertussis (BX470248) BP3171" FT /db_xref="GOA:P0A4U0" FT /db_xref="HSSP:1EJX" FT /db_xref="InterPro:IPR002026" FT /db_xref="UniProtKB/Swiss-Prot:P0A4U0" FT /protein_id="CAE34689.1" FT /translation="MELTPREKDKLLIFTAALLAERRRARGLKLNYPETVALITAALME FT GARDGKTVAELMSEGTRILGRDEVMEGVPEMISNIQVEVTFPDGTKLITVHNPVV" FT misc_feature complement(78795..79091) FT /note="HMMPfam hit to PF00547, DE Urease, gamma subunit, FT score 9e-68" FT CDS complement(79192..80046) FT /transl_table=11 FT /gene="ureD" FT /locus_tag="BB4327" FT /product="urease accessory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3172" FT /db_xref="GOA:P0A4R5" FT /db_xref="InterPro:IPR002669" FT /db_xref="UniProtKB/Swiss-Prot:P0A4R5" FT /protein_id="CAE34690.1" FT /translation="MSETLDQWRAGLTLGFAPGHAGRTVLRERAHYGPMLVQRALYPEG FT PQVCHVAILHPPSGIAGGDALEIRVDVAGGARAALTTPGATRWYKSNGRQASQDVHLRV FT AAGGRLDWLPLESIFFEEADALARNRIQLESGAAAIGWDLIQLGRVNQSGHWSQGRLHT FT ATELYVDGRLLWVDQGLVGAQDDVRRQVSGLAGFPVHAALWSFGPRLDAEQNEELAGLM FT PWSDTLRGAATTMPYDATQSLCLVRCLGVHMEDVRAVMTDAWAYLRPRVLDTPAVVPRL FT WAT" FT misc_feature complement(79267..79899) FT /note="HMMPfam hit to PF01774, DE UreD urease accessory FT protein, score 5e-95" FT CDS 80513..81490 FT /transl_table=11 FT /gene="bbuR" FT /locus_tag="BB4328" FT /product="LysR-family transcriptional regulator" FT /note="Previously sequenced as Bordetella bronchiseptica FT probable transcriptional regulator BbuR SWALL:BBUR_BORBR FT (SWALL:O06703) (343 aa) fasta scores: E(): 3.4e-108, 100% FT id in 286 aa" FT /db_xref="GOA:O06703" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/Swiss-Prot:O06703" FT /protein_id="CAE34691.1" FT /translation="MAAEDFALPADHNPLDTDLLNVFCWVAKTQSFSRAAAELGTSQPV FT ITRKIGRLEECLGVALFVRSNRGCVLTAAGTVLIGKAPSILLQLAEIKEEVSHSASVVS FT GSLSMGITHAASTVMAPRLLPVIARRWPKLQVDVMEALSRTLVERVLHGELALAVLFDP FT PPHPDLICRPLLIERLCLVGNPQSDLRTMAPPTIRDLARLPLMLPSGGQIIRNLLEDAF FT AEINEPLKPVYEAASMAMLREMAVQGIGYTLLTQGGVAEDVAAGKLIAQALPDKGMVVT FT LTLITKRESTRLRNVRLLSDFVASEIRAVARQGQWPGHPTVVGG" FT misc_feature 80561..80740 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 7.7e-20" FT misc_feature 80603..80695 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 80810..81436 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 1.1e-43" FT CDS 81612..82619 FT /transl_table=11 FT /locus_tag="BB4329" FT /product="putative exported protein" FT /note="previously sequenced as Bordetella bronchiseptica FT hypothetical protein in bbur 5'region precursor FT SWALL:YBBU_BORBR (SWALL:O06702) (311 aa) fasta scores: E(): FT 1.3e-106, 100% id in 311 aa. Similar to Rhizobium meliloti FT hypothetical protein ra1058 or sma1927 SWALL:Q92Y30 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 3.6e-33, 37.66% FT id in 308 aa" FT /db_xref="GOA:O06702" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/Swiss-Prot:O06702" FT /protein_id="CAE34692.1" FT /translation="MNKNIPAFHRRCHGLVQGLARTLLLAPVLLALSVPAAQAQTWPSR FT PIRMVVAAGAGSSVDVFARLVSERLSKALGQAVIVDPRPGANGTIAAQAVASAKPDGYT FT LLYAGNSALVVAPLMTKDLPYDAEKDLEPVAPVVYVPLAIAVGAKSAIQNIQELVAGAK FT TDEVFFATPGAASLSRLIGESINQKAGTRLVNIAYPSSPPAHTDIIGGQVPILIDGLGG FT IAPHAKSGRMRLLAVSTASRFAGFPDVPSISEAVPGLATPSMNIVMAPAGTPAEVLDLL FT NRHINEITADPAIASRFIPMGGESAQGSRQDTAAMLREQRVEFRKLMQTANIKP" FT misc_feature 81612..81728 FT /note="Signal peptide predicted for BB4329 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.976 between residues 39 and 40" FT misc_feature 81795..82610 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.5e-58" FT CDS 82707..83669 FT /transl_table=11 FT /locus_tag="BB4330" FT /product="putative exported protein" FT /note="Similar to Agrobacterium tumefaciens hypothetical FT protein atu4727 atu4727 or agr_l_312 SWALL:Q8U6S9 FT (EMBL:AE009401) (329 aa) fasta scores: E(): 4.8e-35, 38.72% FT id in 315 aa, and to Rhizobium meliloti hypothetical FT protein ra1058 ra1058 or sma1927 SWALL:Q92Y30 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 1e-31, 37.07% FT id in 321 aa" FT /db_xref="GOA:Q7WFF0" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7WFF0" FT /protein_id="CAE34693.1" FT /translation="MKISFMGAALSAAFSLVFGACQAETYPDKPVRVVVPAAPGGISDN FT ITRVVAAEMQNVLGQPLVIENLAGASGNIGTSRGLSARPDGYTLTGLTTVQTASMATRP FT ETTPDLLERGEPVMMMSRSCLVLVVPSSLGIKTLQEFIAYAKANPGKISYGSPGVGSGY FT HIMSEVLNAAAGLDMVHIAYKGEQPATTDLLAGRIQVMFHTSPYPYIQSGQLVALAVTS FT EQPWPYAPSVPTLNAVIPGVSYYGWSALYAPKGTPTQIIDRLNAAGNTALRSERVAAGF FT KSLGIVPAGGTPDDLLEQVRSDVTTFRDVVKKRNIVVAD" FT misc_feature 82737..82769 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 82842..83654 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 2.1e-67" FT CDS 83688..84830 FT /transl_table=11 FT /locus_tag="BB4331" FT /product="putative exported protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1016 pa1016 SWALL:Q9I4V7 (EMBL:AE004534) (383 aa) FT fasta scores: E(): 2e-43, 38.7% id in 385 aa, and to FT Mycobacterium tuberculosis hypothetical 40.6 kDa protein FT ltp2 or rv3540c or mtcy03c7.16 or mt3644 SWALL:P71861 FT (EMBL:Z82098) (386 aa) fasta scores: E(): 1e-30, 39.74% id FT in 385 aa" FT /db_xref="GOA:Q7WFE9" FT /db_xref="InterPro:IPR002155" FT /db_xref="UniProtKB/TrEMBL:Q7WFE9" FT /protein_id="CAE34694.1" FT /translation="MTLKNKAAIVGVGASAQGALPGSTPISLAIDAFKAALDDCGLQKS FT DIDGLLTHPGTTSPEGSYNYLRLGEALGINPAYTGSLTMGGGTAGALIQNAVMAVTSGL FT ARNVACVFGDTPKTGNYRFSKPSGWGDSWSIWGMYAAAGNSALSAARHMALYGTTSRQL FT GEVAVACRKHASLNPNALMREPITVDDHQASRWIVEPFHLLDCCLISDGGVCVIVSSTE FT HARDTKQPVVRIAGMGQAYTAQMLEREDWWYVPHQREALDRAFAMAGLGPRDVDVAQLY FT DNFTYSVILWLEHAGFCKRGEGGAFVEGGRIQLGGELPVNTAGGNLSESYMEGWLHVVE FT GVRQIRGQCGPRQVPDAEVCLVTGRGMTLNNSNAMLLTKG" FT misc_feature 83688..83741 FT /note="Signal peptide predicted for BB4331 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.977) with cleavage site FT probability 0.749 between residues 18 and 19" FT misc_feature 83913..83948 FT /note="PS00178 Aminoacyl-transfer RNA synthetases class-I FT signature." FT CDS 84827..85243 FT /transl_table=11 FT /locus_tag="BB4332" FT /product="conserved hypothetical protein" FT /note="Similar to Methanopyrus kandleri predicted FT nucleic-acid-binding protein containing a zn-ribbon mk1377 FT SWALL:Q8TVL2 (EMBL:AE010431) (134 aa) fasta scores: E(): FT 1.4e-08, 32.43% id in 111 aa, and to Thermoplasma volcanium FT hypothetical protein tv0134 tv0134 or tvg0142586 FT SWALL:Q97CG7 (EMBL:AP000991) (135 aa) fasta scores: E(): FT 4.1e-08, 33.05% id in 121 aa" FT /db_xref="InterPro:IPR002878" FT /db_xref="UniProtKB/TrEMBL:Q7WFE8" FT /protein_id="CAE34695.1" FT /translation="MMMSDYSKPLPELNDLNRPFWAAARQGRLSLQHCASCGHVQYPIN FT PVCTTCLDDRLEWRDVSGKGEIFSYIVYHKAYTPAYADELPYNVAMIQLAEGPRLISNV FT RHAQGATPKVGDPVQVVFDQVTDDIAIPRFEVLA" FT misc_feature 84869..85225 FT /note="HMMPfam hit to PF01796, DE Domain of unknown FT function DUF35, score 7e-13" FT CDS 85240..86436 FT /transl_table=11 FT /gene="bbsE" FT /locus_tag="BB4333" FT /product="putative subunit of succinyl-CoA:benzylsuccinate FT CoA-transferase" FT /note="Similar to Thauera aromatica BbsE SWALL:Q9KJF0 FT (EMBL:AF173961) (410 aa) fasta scores: E(): 4.9e-43, 38.15% FT id in 380 aa, and to Sphingomonas aromaticivorans FT hypothetical 41.0 kDa protein orf1338 SWALL:O86014 FT (EMBL:AF079317) (388 aa) fasta scores: E(): 4.1e-23, 31.39% FT id in 395 aa" FT /db_xref="GOA:Q7WFE7" FT /db_xref="HSSP:1Q7E" FT /db_xref="InterPro:IPR003673" FT /db_xref="UniProtKB/TrEMBL:Q7WFE7" FT /protein_id="CAE34696.1" FT /translation="MTAADATLAAGALSGLRVLDLTDSSEQYCGRLLAQLGADVTLVEP FT PRGTSTRHRGPFLQGASGPNASLLFNYLNLGKSSVVADLETEQGRATLHALARQADVLI FT ESRAPAENRRLGLDYAALRAVNERLVVTSITPFGQDGPYAGYQGDDLVAMALGGFLYLG FT GYADREPVGAPGDQALLAAAQFAAVATAIAVWDVERHPADGQGRHIDVSVQESISMGLE FT TAVQFAELEGTVRRRQGGEQRMAGMGVFPCKDGQIYYMAGGVGNGRFWQASTEWLLDEQ FT VPRAAELQAPEWWDRDFISTSEAKTRFYEIFTPFSLARTKAELYEQAQQRRLPLCPMNT FT PADVVESTQLAHRNFFTEAAIPSLRAAFRIPGAPFQMSATPCAAHRVAPELPAEVHAE" FT misc_feature 85477..86058 FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 7.4e-23" FT CDS 86433..87647 FT /transl_table=11 FT /gene="bbsF" FT /locus_tag="BB4334" FT /product="putative subunit of succinyl-CoA:benzylsuccinate FT CoA-transferase" FT /note="Similar to Thauera aromatica BbsF SWALL:Q9KJE9 FT (EMBL:AF173961) (409 aa) fasta scores: E(): 2.6e-56, 42% id FT in 400 aa, and to Ralstonia solanacearum putative FT transmembrane protein rsc0796 or rs05041 SWALL:Q8Y194 FT (EMBL:AL646061) (420 aa) fasta scores: E(): 5.4e-42, 35.73% FT id in 417 aa" FT /db_xref="GOA:Q7WFE6" FT /db_xref="HSSP:1PQY" FT /db_xref="InterPro:IPR003673" FT /db_xref="UniProtKB/TrEMBL:Q7WFE6" FT /protein_id="CAE34697.1" FT /translation="MKKLPLYDVRIADFTWLGAGSFTTKIFADMGAEVIKVESAKRPDA FT LRHSPPYKDRQPGANRSGYFSDRNSSKRSVTLNLKTEAGLAVARELIACSDVVANNFSA FT GVMDKLGLGYESVRAIKPDIVYLSMSMLGQTGPQAHYLGYGLTIGALTGLHGLAGLPGR FT DPTGTGTNYSDHIPNPTHAALAVMAALRHRRRTGQGQFIDLSQIEPTACLLGPVIADYT FT ANGTLPEPMGNRHRPCAPYGVFPCTGEDRWIAIAVQTDEQWRRLAHALPDGPLRAARWE FT TAANRLADAAALEQALGDITRGRDRDDLMRHLQQAGVPAGAVLDARDVLSDPQLTHREH FT WVPHEHAEMGLTTYSALPFRFSDVPVRPRAAAPLLGEHTHTVLRDILRKSTDDIQALQG FT AGALE" FT misc_feature 86655..87230 FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 2.4e-37" FT CDS 87654..88697 FT /transl_table=11 FT /locus_tag="BB4335" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium sp. hypothetical 33.9 kDa FT protein Y4mH y4mH SWALL:Y4MH_RHISN (SWALL:P55567) (297 aa) FT fasta scores: E(): 1.5e-05, 32.42% id in 330 aa, and to FT Neurospora crassa conserved hypothetical protein b11h24.110 FT SWALL:Q8X0J2 (EMBL:AL670005) (359 aa) fasta scores: E(): FT 0.00028, 24.71% id in 348 aa" FT /db_xref="GOA:Q7WFE5" FT /db_xref="InterPro:IPR006992" FT /db_xref="UniProtKB/TrEMBL:Q7WFE5" FT /protein_id="CAE34698.1" FT /translation="MNIQKAHDVAPPEWLAQVREPALCPGQIIVDPHHHLWDRQGQLYL FT LPQFLEDQAGDHRIVSTVYVQGRAMYRAGAHALAPVGETEFARGVAAMCASGRYGETRV FT CDGIVAHADLTQGDGVERVLQAHVEAGGRHFKGIRHMATWDADPALMNPDVAPPPHLLG FT ETRFRRGFAVLDRMGLVFDAWVFHPQLADVVALASAFPDTTIVLNHLGGILNTGSYAGR FT REAIRADWLASLRELATCPNVYLKLGGLGMRISGFDYPSRPRPPNSTELAADFAPYMLP FT AIDLFGPERCMFESNFPVDKRSYTYGVLWNAFKRLAADMSQAERDHLFYQTAAKAYRLN FT LDHIAAD" FT tRNA complement(88813..88903) FT /note="tRNA Ser anticodon GGA, Cove score 75.09" FT CDS complement(89010..89804) FT /transl_table=11 FT /locus_tag="BB4336" FT /product="probable GntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3176" FT /db_xref="GOA:Q7WFE4" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WFE4" FT /protein_id="CAE34699.1" FT /translation="MQPASSAGRRPAVPVYLKIRNAIRDAISNAAYAPGDLLPSETELA FT KRYATTRATVVHAIQQLVFEGLVERKRGVGSFVAQPKLSSTVDTHRVAYFEQDAFARDL FT TYEVIGYGKAVVEDHVRDTLRLGRGEPVYRLQRLRLLSGKPIAFELRYLPALVGARLTA FT EMLARRSVQSLLDEEVGMPITRFLNAVRVALVPAAVARHLQLEKGRPVMVRTHTFLDAA FT DTPLLWGETLYREEYQINYVLTAMQAPDEAVGGRPRKGAGRA" FT misc_feature complement(89571..89750) FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 4.4e-17" FT misc_feature complement(89619..89693) FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT CDS 89905..91140 FT /transl_table=11 FT /locus_tag="BB4337" FT /product="putative methylaspartate ammonia-lyase" FT /EC_number="4.3.1.2" FT /note="ortholog of Bordetella pertussis (BX470248) BP3177" FT /db_xref="GOA:Q7WFE3" FT /db_xref="HSSP:1KCZ" FT /db_xref="InterPro:IPR006395" FT /db_xref="UniProtKB/TrEMBL:Q7WFE3" FT /protein_id="CAE34700.1" FT /translation="MKPMQQDVPPIRIEAVRVTAGIGGHWINDQMAVQTGATADGYFFE FT GPTSSTAFPAVRSPSVAYLVSLDLADGQTAHGDCTTVANAGYAGRPLPLRREDVQAVQA FT VLQESLAGRSFAGFREAAGALDAMPLADTLRLPVEYGVSQALLEAAALASRTRMVDVLC FT REFGRPGPTRGPGFAGSCGGAWEANVDKAIVRGLDMFPQSAIQSRAECERLPDYAAWIA FT GRIRKLGAAGYRPDLHFDFHSSLGRMLDNDEDRVLDYLATICERAAGLTVFFEDPMLSG FT SAAEARERMGSLRAKLDARLPNARLIADEWANGPGNVRAFAASGAAHAVQIKMPDNGSL FT LTTIDAIQGCQEHGTLAYLGGSCNETDISSRASIHVGLAFGAWRMLTKPGLGFDEGLMI FT MTNEISRTLSKR" FT misc_feature 90868..90900 FT /note="PS00626 Regulator of chromosome condensation (RCC1) FT signature 2." FT CDS 91209..92225 FT /transl_table=11 FT /locus_tag="BB4338" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3178" FT /db_xref="GOA:Q7WFE2" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7WFE2" FT /protein_id="CAE34701.1" FT /translation="MHARLHSRGARLAARLALAALTAGAAALPQAAAAADSASFPDRPV FT TMVVPFPPGAATDIIARTVAQKLSDKWGQSVVVENRAGATGSIGSTYVARSAPDGHTLL FT VATTSSHTMGPNLSSRLPWDPVSSFAPVTLLAWAPNVLEVNPSVPAKSVQELIALLKKN FT PGKYTFASSGTGSSIHLAGEMFKEQAGVDMVHVPYKGAAPAVADLLGGQVDIMFDTVAL FT SLPHLKAGKLRPLAVTTTRRSSSLPDVPTMREAGLPGYEMAAWIGLLAPAGTPEAVVAR FT IQADVGAVLKMPDVKEKLQAQGTDISGMPGSEFAVLIKDELGRYGQVMKQAGIQPGD" FT misc_feature 91209..91310 FT /note="Signal peptide predicted for BB4338 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.931 between residues 34 and 35" FT misc_feature 91386..92210 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 3.1e-115" FT CDS 92222..93613 FT /transl_table=11 FT /locus_tag="BB4339" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3179" FT /db_xref="GOA:Q7WFE1" FT /db_xref="InterPro:IPR005656" FT /db_xref="UniProtKB/TrEMBL:Q7WFE1" FT /protein_id="CAE34702.1" FT /translation="MRGTVMPAAHATSQPPATRWLAEHALGFDYDMLPADARRIVRHCI FT LDWYAVTLAACREPAVAALVDDALEEGAGGASPVIGHAAGVSQGAAALIQGTAAHWLDY FT DDVNLAITGHPTAVVYSALLPLALARGSTAREVMAAFAAGYETACRVGRWLGDVHYRHG FT YHATATAGAVAAAAACARLMRLSTAQTASALCLAGTQAAGLKALFGTMAKPLHAGLAAR FT NGLMAARLAARGLDAGQQGLEAAQGFAAVLSPAPDWPAATATPPGGLFLGGRLFKYHAS FT CYGTHAVIECGRMLRERGARVQDIARITLHAHPGSENMCNIATPRTANEARFSLRMNAA FT FGLLGLDASAIDAYTPARLADPAIAELRDRMRVEFHDDLAMMESRMLIEHHDGSAMQAR FT HDAGVPAGSIDDEAARLQAKFHALAAPVIGVGAAGRLRDAILDLDAAPGLHALAVTVPA FT TGGAA" FT misc_feature 92264..93586 FT /note="HMMPfam hit to PF03972, DE MmgE/PrpD family, score FT 5.8e-41" FT CDS 93610..94806 FT /transl_table=11 FT /locus_tag="BB4340" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3180" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7WFE0" FT /protein_id="CAE34703.1" FT /translation="MSEPRPRRILPIIVLAQFCGTSLWFAGNAASADLGMGDSVAYVAS FT AVQLGFIVGTLCSAWLRIADRYAASRLFFGSCLLGAACNYPLTMLALATLPQPDAAVLI FT LRFLVGVALAGIYPVGIRAAASWFQAGLGHALGFLTGALVLGTSFPHLMRALGARIDGS FT LVLASASAIAVLGGAAMLAWVPDGPYARRAPSSGGGTLAQAWRSLPGLRAAAIGYFGHM FT WELYAFWTFVPFYVAAHAAALGAPMAAPTVSLWAFAIIGLGALGCVGGGFVSRRLGSRP FT VALTQLSLSGLCCVLSPLCFALPTPAFLAFLLFWGIVVVGDSPQFAALVAQESPPAQVG FT SIVTLVNAIGFAITVVSIQLLDALAGALPAPYVMAVLAAGPIIGVAWAGAGGWRPAPR" FT misc_feature 93610..93702 FT /note="Signal peptide predicted for BB4340 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.980) with cleavage site FT probability 0.896 between residues 31 and 32" FT misc_feature join(93634..93687,93730..93798,93817..93885,93913..93981, FT 94000..94068,94096..94164,94282..94350,94363..94431, FT 94468..94566,94624..94692,94711..94779) FT /note="11 probable transmembrane helices predicted for FT BB4340 by TMHMM2.0 at aa 9-26, 41-63, 70-92, 102-124, FT 131-153, 163-185, 225-247, 252-274, 287-319, 339-361 and FT 368-390" FT CDS complement(94803..96341) FT /transl_table=11 FT /locus_tag="BB4341" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3181" FT /db_xref="InterPro:IPR007390" FT /db_xref="UniProtKB/TrEMBL:Q7WFD9" FT /protein_id="CAE34704.1" FT /translation="MNAITGGGELHAVGRAQPISEGSEWTFELIQRYDEAISEIAREYR FT LDTYPNQIEVITSEQMLDAYASAGLPIGYPHWSYGKEFIRNEQYYRKGMQGLAYEIVIN FT SSPCIAYLMEENSMAMQALVIAHACYGHNSFFKGNYLFRQWTDADSILDYLVFARKYVM FT DCEDRYGIEAVEAILDSCHALAAHGVDRYKRPTPISYREEAQRQAEREEHARRQYNDLW FT RTVPRQESPAGAGERRAVFPPEPEENLLYFIEKYAPKLEPWQKELVRIVRKIAQYFYPQ FT GQTKVMNEGWATFWHYTLLNRLHQKGRVTDGFMIEVLQSHTNVVSQRGFDERGYGGVNP FT YALGFSMMQDIRRICERPDEEDRRWFPDIAGSDWLTTLDFAMRNFKDESFISQYLSPRL FT IREFRFFAIADHQANPKLEVAAIHDDEGYRQIRKLLAAQHNRDNQVPDIQVVRYFRESD FT RALVLRHQQSRGRPLAGEDADKVMKHLARLWGFRVRLEEAAPDGTVLSYRQIEP" FT CDS complement(96338..97597) FT /transl_table=11 FT /locus_tag="BB4342" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3182" FT /db_xref="InterPro:IPR006698" FT /db_xref="UniProtKB/TrEMBL:Q7WFD8" FT /protein_id="CAE34705.1" FT /translation="MNSLIDRRLNGRNKSAVNRERFLRRYKDQIRKAVQDLIRERSISD FT MDQGGEINLPARDISEPSFRHGEGGDREIVHPGNREFAKGDTFDRPQGGDGGSGSQPGE FT GESVDQFTFSLSRAEFLNLFFEDLELPHLARTQLGDVKQQRWHRAGYTTTGSPSMLSVN FT RTLKASLSRRVALGVGARAALDAAEQELEAARDAGAPQAELDRLLAEVEKCAARVARVP FT FLDDLDLRYRNRVAVAVPMARAVMFCLMDVSGSMDEMKKDLAKRFFTLLYMFLSRKYEH FT VDVIFIRHTDNAEEVDEQTFFYDPKSGGTIVLSALELMHEIVQKRYSPATWNIYAAQAS FT DGDSFGADAGKSARFLAENLLPATRYFAYIEVPDSQEARKSSLWAEYEQESASHFVMRR FT ICERGEIFPVFHDLFKKETV" FT CDS complement(97610..99589) FT /transl_table=11 FT /locus_tag="BB4343" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3183" FT /db_xref="InterPro:IPR010650" FT /db_xref="UniProtKB/TrEMBL:Q7WFD7" FT /protein_id="CAE34706.1" FT /translation="MNQPDLFSSTSGTVGGLAVQSILEGFKSHYARDQETELSLEEYLS FT LAKQDPMAYASPAERMLAAIGEPELIDTRNDPRLSRLFSNRLVRRYPAFKEFYGLEDVI FT DQIVAFFKHAAQGLEERKQILYLLGPVGGGKSSIAERLKVLMEAYPIYALKGSPVNESP FT LGLFHPDRFGDTLEQEYGIARRYLCGIMSPWAVKRLREFDGDISQFRVVRLNPSVLRQV FT AIAKTEPGDENNQDISSLVGKVDIRKLERYAQDDPDAYSYSGGLCLANQGLLEFVEMFK FT APIKMLHPLLTATQEGNFKGTEGFSAIPFNGMILAHSNESEWQTFRNNKHNEAFLDRIY FT IVKVPYCLQVSEEVCIYEKLLRHSSLAQAPCAPGTLDMMAQFSVLTRLKEPENSSIYSK FT LRVYDGESLKDVDPKAKALQEYKDYAGTDEGMTGVSTRFAYKILSSVFNYDQTEVAANP FT VHLMYVLEQRIAREDFPEETRRRYLEFIKGYLAPRYAEFIGKEIQTAYLESYSEYGQNI FT FDRYVTFADCWIQDEEFRDPETGESFDRSALNDELEKIEKPAGIANPKDFRNEIVNFVL FT RARANNAGRNPNWTSYEKLREVIEKKMFSNTEDLLPVISFNAKASAEDRSKHQSFVDRM FT VDKGYTEKQVRLLCEWYLRVRKSS" FT misc_feature complement(99125..99199) FT /note="PS00107 Protein kinases ATP-binding region FT signature." FT misc_feature complement(99182..99205) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(99913..101037) FT /transl_table=11 FT /locus_tag="BB4344" FT /product="riboflavin biosynthesis protein ribd [includes: FT diaminohydroxyphosphoribosylaminopyrimidine deaminase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2948" FT /db_xref="GOA:Q7WFD6" FT /db_xref="InterPro:IPR011549" FT /db_xref="UniProtKB/TrEMBL:Q7WFD6" FT /protein_id="CAE34707.1" FT /translation="MRRALALARSVMYSTAPNPRVGCVIVRDGQVLGEGATQPPGGPHA FT EVCALREAAARGASLAGATVYVTLEPCSHFGRTPPCVDALAAAAPARVVVAMGDPNPRV FT NGQGLARLRAAGIAVTEDVCRDEALELNAGFAARMSRGLPWVWLKLAASLDGRSALHNG FT VSQWITGEAARADGHHWRARSGVVLTGMGTVLKDDPQLNARAVQTSHPPRKAVIDGRFE FT IPEDARLFDDGAQVLVFTARSDAAKARRMADRNARVIELPGVRPDRVDLPAVMRWLASQ FT EINEVHVEAGAGLSGALLAEDCVDELLVYLAPVLLGDAAGMVRLPLLEHLDGARRFEFA FT ELAPVGTDVRLRARVASRWRALQDSVSAASRQRG" FT misc_feature complement(100015..100605) FT /note="HMMPfam hit to PF01872, DE RibD C-terminal domain, FT score 8.4e-56" FT misc_feature complement(100747..101037) FT /note="HMMPfam hit to PF00383, DE Cytidine and FT deoxycytidylate deaminase zinc-binding region, score FT 1.9e-31" FT misc_feature complement(100783..100908) FT /note="PS00903 Cytidine and deoxycytidylate deaminases FT zinc-binding region signature." FT CDS 101243..101806 FT /transl_table=11 FT /locus_tag="BB4345" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2949" FT /db_xref="GOA:Q7WFD5" FT /db_xref="InterPro:IPR000868" FT /db_xref="UniProtKB/TrEMBL:Q7WFD5" FT /protein_id="CAE34708.1" FT /translation="MKQALIVIDVQESFRHRPFWDDSELPAFLAQVQALIDGCRQRDIP FT VLQVFHVNAANDPASPFAPASGHVVALRELRIAPTAVFHKTVHSSLYARDEAGHSLHDW FT LLEHGVGEIIVCGIRTEQCCETTTRHASDAGFKVRFALDATLTFAMRAASGKTYTPAEI FT RERTELVLQDRFAQVLPAAAALAA" FT misc_feature 101246..101737 FT /note="HMMPfam hit to PF00857, DE Isochorismatase family, FT score 2e-05" FT CDS 101819..102775 FT /transl_table=11 FT /locus_tag="BB4346" FT /product="putative AraC-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2950" FT /db_xref="GOA:Q7WFD4" FT /db_xref="InterPro:IPR018060" FT /db_xref="UniProtKB/TrEMBL:Q7WFD4" FT /protein_id="CAE34709.1" FT /translation="MVPVYFVVPAGLVLLDLAGPAEAFRIANKLRPGSFALHYCGPEPE FT VECGLAGLHLSRLAPLPASLPAQALVVVPGVVDAAFQLDRPPLRAVVDWLARCRAQGRF FT DLMSVCSGALLAAAAGLLAHRECTSHHHCLSGLARLEPTARIHDNRIFVEDDGIWTSAG FT VTAGIDLALYLVSRACGPRVASAVARDLVVYLRRAGTDPAISPWLDGRNHMHPGVHRVQ FT DAIVHNPAAAWTPQTLAAQAHTSARHLSRLFAEHAGCTPMDYLYRVRLALARELIRETR FT LDLEHVAERAGFGSAHHMRRVWRRHESGSPSAARHPA" FT misc_feature 101822..102355 FT /note="HMMPfam hit to PF01965, DE DJ-1/PfpI family, score FT 0.0053" FT misc_feature 102479..102616 FT /note="HMMPfam hit to PF00165, DE Bacterial regulatory FT helix-turn-helix proteins, araC family, score 0.18" FT misc_feature 102635..102766 FT /note="HMMPfam hit to PF00165, DE Bacterial regulatory FT helix-turn-helix proteins, araC family, score 0.0008" FT CDS complement(102788..103270) FT /transl_table=11 FT /locus_tag="BB4347" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2951" FT /db_xref="GOA:Q7WFD3" FT /db_xref="InterPro:IPR003796" FT /db_xref="UniProtKB/Swiss-Prot:Q7WFD3" FT /protein_id="CAE34710.1" FT /translation="MRCPFCGNADTQVVDSRVSEEGDTIRRRRRCLSCDKRFTTYERVE FT LAMPSVVKRDGSRTEYDAGKVRGSLSLALRKRPVSTDEVDSAVARIEETLLASGMREVP FT SEQIGELVMGELKRLDKVAYVRYASVYKSFEDIGEFVEAIREMQGPLLPGKKLRKD" FT misc_feature complement(102854..103126) FT /note="HMMPfam hit to PF03477, DE ATP cone domain, score FT 3.1e-24" FT CDS complement(103429..104676) FT /transl_table=11 FT /gene="glyA" FT /locus_tag="BB4348" FT /product="serine hydroxymethyltransferase" FT /EC_number="2.1.2.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP2952" FT /db_xref="GOA:Q7WFD2" FT /db_xref="InterPro:IPR019798" FT /db_xref="UniProtKB/Swiss-Prot:Q7WFD2" FT /protein_id="CAE34711.1" FT /translation="MFNRNLTLDQVDPDVWAAIQKEDVRQEQHIELIASENYASPAVMQ FT AQGTQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRLKQIFGAEAANVQPNSGSQANQG FT VYMAVLKPGDTVLGMSLAEGGHLTHGASVNASGKLYNFVPYGLDADEVLDYAQVERLTK FT EHKPKLIVAGASAYALHIDFERMARIAHDNGALFMVDIAHYAGLVAGGAYPNPVPHADF FT VTSTTHKSLRGPRGGVIMMKAEFEKAVNSAIFPGIQGGPLMHVIAAKAVAFKEALSPEF FT QDYAQQVVKNAKVLADTLVKRGLRIVSGRTESHVMLVDLRPKGITGKEAEAVLGQAHIT FT VNKNAIPNDPEKPFVTSGIRLGTPAMTTRGFKEAEAELTANLIADVLDNPRDEANIAAV FT RARVNELTARLPVYGN" FT misc_feature complement(103528..104655) FT /note="HMMPfam hit to PF00464, DE Serine FT hydroxymethyltransferase, score 3.1e-248" FT misc_feature complement(103966..104016) FT /note="PS00096 Serine hydroxymethyltransferase FT pyridoxal-phosphate attachment site." FT CDS complement(104891..105547) FT /transl_table=11 FT /locus_tag="BB4349" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2953" FT /db_xref="HSSP:1VI3" FT /db_xref="InterPro:IPR005247" FT /db_xref="UniProtKB/TrEMBL:Q7WFD1" FT /protein_id="CAE34712.1" FT /translation="MNLSSLSFSDNESIPERYAFGRIDAQSHVALADNFNPQFSWDDVP FT DGTLSFALICHDPDVPSQPDDVNQEGRTVPADLPRVDFFHWVLVDLAADMREIQEGAFS FT DGITPRGKGGPLAPNNARQGVNDYTGWFAADRDMNGDYFGYDGPCPPWNDERVHHYVFT FT LYALDVPSLNLQGSFTGLDALKAMQGHVLAQASLTGTYTLNPDLAPRQIGATTSS" FT CDS complement(105583..106812) FT /transl_table=11 FT /gene="tyrS" FT /locus_tag="BB4350" FT /product="tyrosyl-tRNA synthetase" FT /EC_number="6.1.1.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP2954" FT /db_xref="GOA:Q7WFD0" FT /db_xref="HSSP:1H3F" FT /db_xref="InterPro:IPR002307" FT /db_xref="UniProtKB/Swiss-Prot:Q7WFD0" FT /protein_id="CAE34713.1" FT /translation="MSHPEAPITPEVEADLAIARRGCDELLVESEFARKLACSRATGVP FT LRIKLGLDPTAPDIHLGHTVVLNKMRQLQDLGHNVIFLIGDFTSTIGDPSGRNSTRPPL FT TREQIETNAKTYYAQASLVLDPARTEIRYNSEWCDPLGARGMIQLASRYTVARMMERED FT FTRRFKGGVPIAVHEFLYPLLQGYDSVALKADLELGGTDQKFNLLVGRELQKEYGQEQQ FT CILTMPLLVGTDGVEKMSKSKGNYIGISEAPESMFGKLMSISDTLMWRYYELLSFRSLA FT DIAALKAEIDGGRNPRDAKVALAQEIVARFHSPQAAEAALAAFEARFRDGAIPEDMPEV FT TVGGAPQGILRILREAGLVASGSEAQRNVEQGGVRVNGDRVEDKSLQLSAGTYVVQVGK FT RKFARVKLVG" FT misc_feature complement(105631..105774) FT /note="HMMPfam hit to PF01479, DE S4 domain, score 4e-05" FT misc_feature complement(105826..106686) FT /note="HMMPfam hit to PF00579, DE tRNA synthetases class I FT (W and Y), score 2.6e-99" FT misc_feature complement(106621..106653) FT /note="PS00178 Aminoacyl-transfer RNA synthetases class-I FT signature." FT CDS 107074..108489 FT /transl_table=11 FT /locus_tag="BB4351" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2956" FT /db_xref="GOA:Q7WFC9" FT /db_xref="InterPro:IPR016047" FT /db_xref="UniProtKB/TrEMBL:Q7WFC9" FT /protein_id="CAE34714.1" FT /translation="MNRGPNSLVRSFKRKVAALFAPPVEPTSRGGALLRRTLTVSALGL FT FAGAAALGMVQQPDRSELPPLRLIDSVLPLEAGQMQVSDASNAPYISETRIRAGDTLAA FT VLQRLDIDSPRLQNFLTHDASARSIYKLYPGRSVQAATNENGDLVWLRYIHTPGNESGG FT QVVTRLLHVAPDGANGYKAEEVTQGTEQQTRVAVGTIRSSLFGATDAAGIPDSVTMQMA FT DILSSKIDFLRDLRQGDQFRVVYEVRTHEGRYAGAGRVQALEFINGDKTYNAVWFSPDG FT KSGSYYDFDGTSLRGAFLRTALKFSRISSTFGMRMHPIHKTWTGHKGVDYAAPTGTPIH FT ATADGTVEFAGWQNGYGNVVIIKHHGKYSTLYAHQSRIAAGLKKGQKIAQGELVGYVGS FT TGWATGPHLHYEFRVNNQPIDPLAVDLPVARKLEPAELRAFTQAVQPYKQQIKLLTEFQ FT QTLPEGSATVASR" FT misc_feature 108091..108345 FT /note="HMMPfam hit to PF01551, DE Peptidase family M23/M37, FT score 2.6e-38" FT CDS 108495..109631 FT /transl_table=11 FT /locus_tag="BB4352" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2957" FT /db_xref="GOA:Q7WFC8" FT /db_xref="InterPro:IPR005338" FT /db_xref="UniProtKB/Swiss-Prot:Q7WFC8" FT /protein_id="CAE34715.1" FT /translation="MDSTTHGPRTHVPGRLFIGLMSGTSMDGADGVLVRLDGPRPEVLA FT SASLPMPAALRDELFALNHAGANELERAALAANGLARLYARAVRQLLDQAGLQPGDVAA FT IGAHGQTVRHRPDLGYTLQLNAPALLAELAGIDVVADFRSRDVAAGGQGAPLVPPFHAA FT LFAGGQARAVLNLGGIANVTLLEPGRPPRGFDTGPANVLLDAWCQRHTGQPYDADGRFA FT AQGQVLAGLLEHLIASEPWFALAPPKSTGRDLFNLDWLLARLQAFDGPAPQPQDVQATL FT QRLTARTVANAIDASAAAPRDVLVCGGGARNPGLMRELAYCLQRPVHPTDDAGVPAQWV FT EALAFAWLAQACLDRIPAGLPTVTGARAARVLGALYPA" FT misc_feature 108537..109625 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03702, DE Uncharacterised protein FT family (UPF0075), score 2.3e-176" FT CDS complement(109701..110072) FT /transl_table=11 FT /locus_tag="BB4353" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2958" FT /db_xref="GOA:Q7WFC7" FT /db_xref="HSSP:1R94" FT /db_xref="InterPro:IPR017870" FT /db_xref="UniProtKB/Swiss-Prot:Q7WFC7" FT /protein_id="CAE34716.1" FT /translation="MNAVTETVDLQAPPPVPLVFTDSAAAKVKDLLAEEGNPELKLRVF FT VQGGGCSGFQYGFTFDEVVNDDDTVLDKAGVQLLVDPMSFQYLVGAEIDYKEDLEGAQF FT VIRNPNASTTCGCGSSFSV" FT misc_feature complement(109707..110024) FT /note="HMMPfam hit to PF01521, DE HesB-like domain, score FT 2.4e-54" FT misc_feature complement(109710..109763) FT /note="PS01152 Hypothetical hesB/yadR/yfhF family FT signature." FT CDS complement(110160..110927) FT /transl_table=11 FT /locus_tag="BB4354" FT /product="putative integral membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2959" FT /db_xref="UniProtKB/TrEMBL:Q7WFC6" FT /protein_id="CAE34717.1" FT /translation="MRPGRAVMPDDSASAQPRAPVARPQGRARAWLALAAGLVVGAVAG FT WRYGLAHQGPDDAVVLTRQQVAAQEAAMQQREAEARFLRAQLDTADGEIAVERAARAEL FT ETQLQSAQSEVGRVRDQLAFYEQLLPPGPAGSVDIRGVAFEREGQGLRYKVLLMRSGRG FT ETPFSGALRFQATGTLKGETVTRDLEPLTVKAEGGGATVPEAGASLLALQFDQYQRSQG FT LLDLPDGFVPETVTVSVLEDTTVRATRTVKLEF" FT CDS complement(110943..112007) FT /transl_table=11 FT /gene="argC" FT /locus_tag="BB4355" FT /product="N-acetyl-gamma-glutamyl-phosphate reductase" FT /EC_number="1.2.1.38" FT /note="ortholog of Bordetella pertussis (BX470248) BP2960" FT /db_xref="GOA:Q7WFC5" FT /db_xref="InterPro:IPR012280" FT /db_xref="UniProtKB/Swiss-Prot:Q7WFC5" FT /protein_id="CAE34718.1" FT /translation="MAQASNSRIKVGIVGGTGYTGVELLRLLSQHPHVALTAITSRKED FT GLPVADMYPNLRGRVKLAFSAPEKASLTDCDVVFFATPHGVAMAQAAELLAAGTRVIDL FT AADFRLQDTAVFERWYKIPHTCPDILADSVYGLVELNREAISKARVIGNPGCYPTTVLL FT GLAPLIEGGKQLVDVQTLIADCKSGVSGAGRKAEVGSLFSEASDNFKAYGVAGHRHQPE FT IVAQLEKLAGGKVGLTFVPHLVPMIRGMFSTLYARILPQARDTDFQALFEARYADEPFV FT DVMPAGSLPETRSVRASNNLRISVQRPGGGDQLVILVVQDNLVKGASGQAVQNMNLMFG FT LPESAGLDQVAILP" FT misc_feature complement(111033..111527) FT /note="HMMPfam hit to PF02774, DE Semialdehyde FT dehydrogenase, dimerisation domain, score 6.4e-26" FT misc_feature complement(111552..111986) FT /note="HMMPfam hit to PF01118, DE Semialdehyde FT dehydrogenase, NAD binding domain, score 4.5e-42" FT misc_feature complement(111666..111983) FT /note="HMMPfam hit to PF01408, DE Oxidoreductase family, FT NAD-binding Rossmann fold, score 0.00095" FT CDS complement(112196..112588) FT /transl_table=11 FT /gene="rpsI" FT /locus_tag="BB4356" FT /product="30s ribosomal protein S9" FT /note="ortholog of Bordetella pertussis (BX470248) BP2961" FT /db_xref="GOA:Q7WFC4" FT /db_xref="InterPro:IPR000754" FT /db_xref="UniProtKB/Swiss-Prot:Q7WFC4" FT /protein_id="CAE34719.1" FT /translation="MIGNWNYGTGRRKTSVARVFIKKGSGKIVVNGKPVDEFFARETGR FT MIVRQPLELTGHLESFDIKVNVHGGGETGQAGAVRHGITRALIDYDAALKPALSQAGFV FT TRDAREVERKKVGFRKARRRKQFSKR" FT misc_feature complement(112202..112561) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00380, DE Ribosomal protein S9/S16, FT score 1.6e-53" FT misc_feature complement(112328..112384) FT /note="PS00360 Ribosomal protein S9 signature." FT CDS complement(112598..113065) FT /transl_table=11 FT /gene="rplM" FT /locus_tag="BB4357" FT /product="50s ribosomal protein L13" FT /note="ortholog of Bordetella pertussis (BX470248) BP2962" FT /db_xref="GOA:Q7WFC3" FT /db_xref="HSSP:1J3A" FT /db_xref="InterPro:IPR005823" FT /db_xref="UniProtKB/Swiss-Prot:Q7WFC3" FT /protein_id="CAE34720.1" FT /translation="MSWQSKYFYLGTIMKTFVAKPHEVKRDWFVIDAKGKVLGRVASEV FT AHRLRGKHKPEFTPHVDTGDYIVIINAADIVVTGNKAQDKKYFRHTTYPGGIRETNFEK FT MQQRFPGRAIQKAVKGMLPKGPLGYAMIKKLKVYAGAEHPHTAQQPKPLEF" FT misc_feature complement(112604..112984) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00572, DE Ribosomal protein L13, FT score 5.2e-68" FT CDS complement(113321..114418) FT /transl_table=11 FT /locus_tag="BB4358" FT /product="putative exported solute binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2963" FT /db_xref="GOA:Q7WFC2" FT /db_xref="InterPro:IPR018389" FT /db_xref="UniProtKB/TrEMBL:Q7WFC2" FT /protein_id="CAE34721.1" FT /translation="MQRRSFLKHAGLGAVAGSAAVAAPVFAQDAPTLNWRMASSFPRSL FT DTLFGTGEIFVKFVSEATGGKFNIRQFPGGEIVPALQVMDAVSNNTIECGHTVSYYYYG FT KDPAYCFDSAVPFGLNARQMNAWMFDGDGMKLTREMFKPLKIVNFPMGNTGVQMGGWYR FT KEIKSPDDLKGLKMRTAGFAGEVLSRMGVVPQQLAGGDVYPSLEKGTLDAVEFVGPYDD FT EKLGFNKVAKYYYYPGWWEGGPQVSLYLNEGAWEGLPKNYQAIVEAASRVAHVAMTSRY FT DALNPPALRKLIAGGAELRAFPRSVMDASYEAALTVYKEFSDKDPKFKAIYENYMGFRD FT SVVPWFRLAEGSYDQYLGVAMAGRK" FT misc_feature complement(113444..114310) FT /note="HMMPfam hit to PF03480, DE Bacterial extracellular FT solute-binding protein, family 7, score 6.6e-64" FT misc_feature complement(114338..114418) FT /note="Signal peptide predicted for BB4358 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 27 and 28" FT CDS complement(114758..116122) FT /transl_table=11 FT /locus_tag="BB4359" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2964" FT /db_xref="InterPro:IPR002510" FT /db_xref="UniProtKB/TrEMBL:Q7WFC1" FT /protein_id="CAE34722.1" FT /translation="MVNSSNSLPIAANHARFSELVEQVLAYARQAGASDAAAEVSESLG FT LSVSVRKNDIETVEQTRDRSLDLTVYAGQSRGSASTSDFSEQALRETVEAAWHIARHTA FT ADPAAGLPDADLLATEFPDLGLHYPWPVTTEEAAELALRAERAAREVDARITNTDGASV FT ASYEGQFVMGNTRGFLGGYPYSRHSLSVAPIAGRGNNMQRDYWYTSDRNPNRLAAPEVV FT GRYAAERTLSRLSARRLRTGKFPVLFEAPLALGLLGAFTQAANGGALYRKATFLVDALG FT KPIFADHIDVSENPHIPGAMGSSPFDDEGVRTRARSVVSAGVLEGYFLSSYTARKLGMA FT TTGNAGGSHNLTLSSRLTRPGDDFEAMLRKLGTGLLVTELIGQGVNYVSGDYSRGAFGY FT WVENGKIQHAVQEITIAGNLVDMFRHIVAVGADAISRGTKTTGSILIEQMSVAGT" FT misc_feature complement(115142..116023) FT /note="HMMPfam hit to PF01523, DE Putative modulator of DNA FT gyrase, score 1.2e-52" FT CDS 116181..116732 FT /transl_table=11 FT /locus_tag="BB4360" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2965" FT /db_xref="InterPro:IPR006839" FT /db_xref="UniProtKB/Swiss-Prot:Q7WFC0" FT /protein_id="CAE34723.1" FT /translation="MSSHSQEPVGEENFDDSEYDRPSKSQVKREMHALLDLGKELVELS FT PERLRQLPLEERLYEAIREAQRTTGREGRRRQIHFVGKLMRSAPAEAIRAQLDTWRNGS FT REETAAMHRLEALRERLLKDDDALTAVLQRNPDADIQHLRALIRAARKEAAANAALSQG FT QEPQRKQYRALFQALKNLSA" FT CDS 116746..117420 FT /transl_table=11 FT /locus_tag="BB4361" FT /product="probable carboxylesterase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2966" FT /db_xref="GOA:Q7WFB9" FT /db_xref="HSSP:1AUO" FT /db_xref="InterPro:IPR003140" FT /db_xref="UniProtKB/TrEMBL:Q7WFB9" FT /protein_id="CAE34724.1" FT /translation="MTAQTDLLDCIELETAPNPTHAVIWLHGLGADGNDFVPIVPELRL FT DGLAVRFVFPNAPVQPVTINGGMAMRSWYDILVTDLVRREDAAGIRASEAAVRALIARE FT NERGIPASKIVLAGFSQGCAMTLHTGLRLDQQLAGMMGLSGYLPLLDSAAAERHPANAA FT TPIFLAHGLYDPVVAPERADASRAHLQALGYDVRWHTYPMPHSVCLEEVADIGAFLREV FT LR" FT misc_feature 116767..117414 FT /note="HMMPfam hit to PF02230, DE FT Phospholipase/Carboxylesterase, score 9.7e-65" FT CDS 117632..118681 FT /transl_table=11 FT /locus_tag="BB4362" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2967" FT /db_xref="InterPro:IPR015168" FT /db_xref="UniProtKB/TrEMBL:Q7WFB8" FT /protein_id="CAE34725.1" FT /translation="MAVRTQEEVPVKSPSSPFACRLLAAGMLAGLLGSGLAAAQPLNPP FT VKVRYEEVVRSILYVPKYVALSQGYFKDAGLDVSMKTSQGTDKGMTALLSGSADIVLIG FT PEASIYVQNSESPVKPKIFAGLTATDGFFLLSRKPIDKFDWSMVKGKEIIGFRQGSNPL FT VFLETVLRKHGIDPQKDVKLLNQIGIPARAGAWMAGQGEYGIFLEPEAGELVRNGKGHI FT VASVGHEVGQVDYTVFTSTDKYIRDNPKVIQAWTNVVARAEKYVQGTPAATLAPQIASF FT FPGLEQQGIIDAIERYKQYQIWKTTPLVTPEAMNQLQDMLIASAVMKDAARVKYEDVVM FT PEFARQAKP" FT misc_feature 117632..117748 FT /note="Signal peptide predicted for BB4362 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.983) with cleavage site FT probability 0.937 between residues 39 and 40" FT CDS 118678..119487 FT /transl_table=11 FT /locus_tag="BB4363" FT /product="putative ABC transport proteins, ATP-binding FT component" FT /note="ortholog of Bordetella pertussis (BX470248) BP2969" FT /db_xref="GOA:Q7WFB7" FT /db_xref="HSSP:1Q1B" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WFB7" FT /protein_id="CAE34726.1" FT /translation="MSAVVHNLMPAAAAAKIELREVSLSYFTPEGETEALSKVSFSLAP FT GEFVSLIGQSGCGKSTLLSLIAGLIPPTSGAVLVDGTPVTRPSPRIGYMLQQDYLFEWR FT TILDNVMLGAEIQGRRDARSEARAVHLLEKCGLGAFLEHTPRQLSGGMRQRAALARTLV FT TEPDVILLDEPFSALDSQTRLAISDEVVDILRRERKTVVLVTHDIGEAIAMTDRVIVLS FT RRPGRLKSQYRINFAEPRPTPFQARSRPEFNTYFEQLWEELDVHVEG" FT misc_feature 118813..119349 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 5.2e-61" FT misc_feature 118834..118857 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 119119..119163 FT /note="PS00211 ABC transporters family signature." FT CDS 119490..120326 FT /transl_table=11 FT /locus_tag="BB4364" FT /product="putative ABC transport proteins, inner membrane FT component" FT /note="ortholog of Bordetella pertussis (BX470248) BP2970" FT /db_xref="GOA:Q7WFB6" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7WFB6" FT /protein_id="CAE34727.1" FT /translation="MTAPAANTLALRPAHAPSEKYQEYLRRDRRRKHHVRLAQLMLLVL FT FLCAWEILPRMHVLNPLLTSYPSALWPTFFELWNHGNLPRHIAATVMATLVGFGLSMLI FT GVAVAAALWWSDFLYKVIDPFLVVANAMPKIAFVPIFYLWLGSDYAVYGMAVAIAVFVT FT IMVVYAGFRGVDPNKMKLAYTFGASRWQVLTKVILPGSVPTLIAAVKMNIGLALVGVIV FT GEFQSADLGLGFLIMNGSQIFKLNIVMTAITLLALISSVMYLAIYRLEAAVARRYA" FT misc_feature join(119589..119648,119760..119828,119865..119924, FT 119934..120002,120132..120200,120228..120296) FT /note="6 probable transmembrane helices predicted for FT BB4364 by TMHMM2.0 at aa 34-53, 91-113, 126-145, 149-171, FT 215-237 and 247-269" FT misc_feature 119997..120212 FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 0.031" FT CDS 120341..121033 FT /transl_table=11 FT /locus_tag="BB4365" FT /product="putative hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2971" FT /db_xref="GOA:Q7WFB5" FT /db_xref="InterPro:IPR000868" FT /db_xref="UniProtKB/TrEMBL:Q7WFB5" FT /protein_id="CAE34728.1" FT /translation="MEFPQWVIDRVQARQGCLHPYDSLPGPRTAAVVIDMQRYFTLPGY FT QGECAAARAIVQPINRLCAAVRAAGGSVVWVQTASDHADSFWSHHHGVMLTPERSKRRL FT ETLKRDSEGYALHPDMDARAEDVRVTKRFYSAMAPGSSELEPLLRGRGIDTLLIAGTVT FT NVCCESTARDAMMRDFRTIMVDDALAAVTPAEHENALHGWMLFFGDVLSVDEASARLAA FT ADEARRIA" FT misc_feature 120410..120994 FT /note="HMMPfam hit to PF00857, DE Isochorismatase family, FT score 6.3e-29" FT CDS complement(121045..121434) FT /transl_table=11 FT /locus_tag="BB4366" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2972" FT /db_xref="InterPro:IPR004360" FT /db_xref="UniProtKB/TrEMBL:Q7WFB4" FT /protein_id="CAE34729.1" FT /translation="MRIRLNSIFVDDQDKALRFYTDVLGFTKKHDIPAGAARWITVVSP FT EGPDDLELVLEPNGHPAASAYQAALRQDGIPVTAFESADIHAEVRRLKDRGVAFTIDPT FT PAGPATIAIFSDTCGNLIQLYQVGC" FT misc_feature complement(121051..121410) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00903, DE Glyoxalase/Bleomycin FT resistance protein/Dioxygenase superfamily, score 9.1e-16" FT CDS complement(121540..122928) FT /transl_table=11 FT /gene="dbpA" FT /locus_tag="BB4367" FT /product="probable ATP-dependent RNA helicase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2973" FT /db_xref="GOA:Q7WFB3" FT /db_xref="HSSP:1FUU" FT /db_xref="InterPro:IPR014001" FT /db_xref="UniProtKB/TrEMBL:Q7WFB3" FT /protein_id="CAE34730.1" FT /translation="MTNTSFSSLPLLPALLDNLQGLGFEQMTPIQAQSLPLILEGRDLI FT AQAKTGSGKTAAFGLGVLQNLDVNRLAPQALVLCPTRELADQVAQELRRLARLIPNVKV FT LTLCGGAAARPQAESLARGTHLVVGTPGRIQDHLARGSLDLSTLNTLVLDEADRMVDMG FT FYDDIAAIASHCPARRQTLLFSATYPDNIRKLSARFLRNPAEIKVEAQHDASRIEQLFF FT EIDEGQRLDAVAALLAHFRPASTLAFCNTKIRSHDLVERLRAQGISAQALNGDLEQRER FT DEILIQFANQSCAVLVATDVAARGLDIQNLGAVINVDVTKDTEVHVHRIGRSGRGDQKG FT LALSLCSPEEMRWANLIEQYQGAPLKWADLGSLRPKSDRPLRAPMITLCIQGGKKDKLR FT PGDLLGALTGDGGLAFEQVGKINITEFNAYVALDRQVAKQAFARLSNSNIKGRRFRMRF FT LEEF" FT misc_feature complement(121549..121806) FT /note="HMMPfam hit to PF03880, DE DbpA RNA binding domain, FT score 2.5e-26" FT misc_feature complement(121918..122133) FT /note="HMMPfam hit to PF00271, DE Helicase conserved FT C-terminal domain, score 9.3e-25" FT misc_feature complement(122269..122880) FT /note="HMMPfam hit to PF00270, DE DEAD/DEAH box helicase, FT score 1.1e-77" FT misc_feature complement(122449..122475) FT /note="PS00039 DEAD-box subfamily ATP-dependent helicases FT signature." FT misc_feature complement(122764..122787) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(122833..122928) FT /note="Signal peptide predicted for BB4367 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.637) with cleavage site FT probability 0.489 between residues 32 and 33" FT CDS complement(123045..124541) FT /transl_table=11 FT /locus_tag="BB4368" FT /product="putative integral membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2974" FT /db_xref="UniProtKB/TrEMBL:Q7WFB2" FT /protein_id="CAE34731.1" FT /translation="MGQQVVITAAHWMYLLGVVVIVITMIFRANVVVPSLLGTLLVGIA FT FGGSVVSGVTAVFNASFMAAKELFNIFLVIAFMTALLNALKTLGSDVRMVQPFRAVMTN FT GHIAFVVLALATYLISLFFWPTPAVPLVAAILLPAAIAAGLPPLGAACAIAIAGQGMAL FT SSDYVIGVAPGISAKAAGVATALVAERTLILSLVTGIVALVLAYVGMRRQIQAPSEALL FT DAWQRRAVVVPESVEESGTMDKGELAAAVDYDSGSVPLGKQGWSRLFAIVTPVVFLLVV FT LVMVAPRLFPSLPALRGGEAAALVGGAAALLMVAATAVGVPGRDFLNTAADHVTDGFVF FT AFKAMGSVLPIAGFFFLGAPDQAAGILGVEPGHAPNLLFDLLQAAQGWIPNSHLVVAFG FT VLIVGVITGIDGSGFSGLPLTGALSGALGATAGVDAATLAAVGQMGAVWTGGGTLVAWS FT SLIAVAGFARVPVLELVRKLFGPVVLGLIVSTVAAVMFMT" FT misc_feature complement(join(123054..123122,123141..123209, FT 123237..123305,123324..123392,123465..123533, FT 123570..123638,123681..123740,123918..123986, FT 124071..124139,124176..124244,124287..124340, FT 124359..124427,124455..124523)) FT /note="13 probable transmembrane helices predicted for FT BB4368 by TMHMM2.0 at aa 7-29, 39-61, 68-85, 100-122, FT 135-157, 186-208, 268-287, 302-324, 337-359, 384-406, FT 413-435, 445-467 and 474-496" FT misc_feature complement(123276..123293) FT /note="PS00343 Gram-positive cocci surface proteins FT 'anchoring' hexapeptide." FT CDS 124838..125512 FT /transl_table=11 FT /locus_tag="BB4369" FT /product="putative GntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2975" FT /db_xref="GOA:Q7WFB1" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WFB1" FT /protein_id="CAE34732.1" FT /translation="MTLGSQHSPLFALVQETLRKRILSGAYAQGERLVEGDLAEEMGVS FT RIPVREALRALAAAGLVRIEPRRGASVASLSPEHARDIVEVRATLEALNARLAAQRRNP FT QQVADMDRAIRDGAHACERGDTAALVEQNRHFHELLGGVSTNAVLQDLMRSLRDRTALL FT FARNSVTRAADILDEHAGILQAVTAGDADLASLLAARHVHNAAQWYFERPVDRKAVAAD FT TD" FT misc_feature 124877..125053 FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 3.8e-14" FT misc_feature 124931..125005 FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT CDS complement(125509..127968) FT /transl_table=11 FT /locus_tag="BB4370" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2977" FT /db_xref="GOA:Q7WFB0" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:Q7WFB0" FT /protein_id="CAE34733.1" FT /translation="MLRHVLAPMFEPASLVVIADRLLPVTSVLPSALRARTTVVQAAPG FT AAPELPAACAGVAEGQRPDLALVCVAPGVLPETLRRLAALAPRAVILLPHELPDPYPRG FT TQALCRAWAAENRCELLGPRSFGAQRPHAGLNLSQHPSLARAGRVALVAQSRSIMAAVM FT DWAEDVHIGFSIAVSLGDEAVVGLSQVLDYLASDSRTDSIVLYIEDVGPAREFMSALRA FT AASVKPVIVLKAGRADANGADAVFDAALRRAGAVRVRYFVQLFSAVKVLGYTRRPRGRR FT VALFSNGSGPPQLALDLIGPDAAVLQAKLSPATQRTLADMLEPDAATANPVITYTPLTP FT ERIQAILDCLLDDAGVDGVLVLLAPDALADMPAVARQLAQLAPRARKPVVSCFMGDAGM FT RPLRRMLDDAGTSAFRTPESAADAFGVLATHHYNQQLLLQTQPPEPPGLLPDSAGARDI FT MGQARAQGRRELDPIEARALLDAFYVPLREGPLGVRPIEAESRPMAIRVRRDPHFGPVI FT RFGAGGPDAVLSGADRGMDLPPLNGFLARQMIERSRLWRRVLAPQVTNAAAEALQHALV FT QVSEMVSELPDIESVDIDPLYAGETQLRAGGLRIVLCEREATVSPQLSGYAHMAIHPYP FT ARLVQARRFDDGTPWVIRPIRPEDGEPLQEFIRGLSERSRYMRFVSMMRELTPRMVARY FT TQVDYHRELALVAATQVPNPANRGHPREVIIGFAHYLRNPDGRGAEYALVIGDDWQRRK FT LGGQLMSALIDAAREQGLEYIDGLVLSTNRPMLTLMTRLGFTNDADPEDPTMRRVWLQL FT REPDAPA" FT misc_feature complement(125584..125814) FT /note="HMMPfam hit to PF00583, DE Acetyltransferase (GNAT) FT family, score 1.2e-11" FT CDS 128065..129510 FT /transl_table=11 FT /gene="gltX" FT /locus_tag="BB4371" FT /product="glutamyl-tRNA synthetase" FT /EC_number="6.1.1.17" FT /note="ortholog of Bordetella pertussis (BX470248) BP2978" FT /db_xref="GOA:Q7WFA9" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/Swiss-Prot:Q7WFA9" FT /protein_id="CAE34734.1" FT /translation="MAQSAERPRPYAFMTANATRPVRTRFAPSPTGFLHLGGARTALFS FT WAFARHHQGVFVLRIEDTDVERSTPEAVQAILDSMDWLGMQPDEGPFYQMKRMDRYAEV FT LAGMLEAGTAYHCYCSPEEVDAMREAARAKGLKPRYDGTWRPEPGKTLPPVPADRKPVI FT RFRNPIDGATSWNDMVKGPISFDNGELDDLIIARPDGTPTYNFCVVVDDWDMGITHVLR FT GDDHVNNTPRQINILRALGATLPEYGHVPMILGPDGEKLSKRHGAVNVMEYDAQGYLPE FT AMVNYLARLGWSHGDDELFTREQLVEWFDTRHLSKSASQWDPKKLNWVNAHYIKGMDDA FT ELAGRVAPRVERRGGKPQAADLPAIMGLLKDRAETLEQLAEDAMLFCGEYQPAPAELAA FT QHLTETARAALADFAARARDTEWNRAAISALIKAVLADRGLKMPQLGIPLRVAVTGRAQ FT TPAVDAVLELLGKETVLARLQAL" FT misc_feature 128125..129048 FT /note="HMMPfam hit to PF00749, DE tRNA synthetases class I FT (E and Q), catalytic domain, score 6.4e-142" FT misc_feature 128146..128181 FT /note="PS00178 Aminoacyl-transfer RNA synthetases class-I FT signature." FT CDS complement(129514..130716) FT /transl_table=11 FT /locus_tag="BB4372" FT /product="putative membrane transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2979" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7WFA8" FT /protein_id="CAE34735.1" FT /translation="MSLSSESRAILLLALAAFASSTAFRICDPMLPQLAADFATTTGQA FT AYAVTAFAIAYGVLQMFFGPLGDRYGKYRVVCIATFACALGSAAAVLAGSLDALVAARA FT LSGAAGAGVVPLSMAWIGDNVPYERRQATLARFLTGTILGMAAGQLVGGLFADTVGWRW FT AFAVLVAIYLVVGTLLYRELRRQAASGQTGAAGAARTGFVAQARLVLGTPWARVVLATV FT FFEGLLVFGTLAFAPSYLHARFGISLTAAGALVASYALGGLLYTLVAGHVLRRLGERGL FT ALAGGLVLSAAFLCYWLGPQWLWSLPAGVLAGFGYYLLHATLQTNATQMVPAARGTAVA FT WFASCLFMGQAAGVALAGLVVDAAGAAMLFGMTALLLPLLGCGFAWALRRHAAAQTAQA FT A" FT misc_feature complement(join(129553..129621,129634..129702, FT 129760..129813,129823..129876,129913..129981, FT 130009..130077,130177..130236,130249..130317, FT 130354..130422,130432..130500,130519..130587, FT 130645..130698)) FT /note="12 probable transmembrane helices predicted for FT BB4372 by TMHMM2.0 at aa 7-24, 44-66, 73-95, 99-121, FT 134-156, 161-180, 214-236, 246-268, 281-298, 302-319, FT 339-361 and 366-388" FT misc_feature complement(130612..130716) FT /note="Signal peptide predicted for BB4372 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.751 between residues 35 and 36" FT CDS complement(130785..131294) FT /transl_table=11 FT /locus_tag="BB4373" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2980" FT /db_xref="UniProtKB/TrEMBL:Q7WFA7" FT /protein_id="CAE34736.1" FT /translation="MSRVSISLVGALGVALMLGGCAARKESAATAPRATPEAPEAVACT FT PAQAGDPMVGTWYSVSRQRGFAGDFQTLTVLSADGTMRYETQLKVGRKTRPALRETGCW FT HVADGIYTMRTTQSNGEPVDASDPIYQNRYRVEKVDSGKLTLRELKRNGQAVTARRMQP FT GYRLPY" FT misc_feature complement(131211..131294) FT /note="Signal peptide predicted for BB4373 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.895 between residues 28 and 29" FT misc_feature complement(131232..131264) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(131503..131955) FT /transl_table=11 FT /locus_tag="BB4374" FT /product="putative AsnC-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2981" FT /db_xref="GOA:Q7WFA6" FT /db_xref="InterPro:IPR019888" FT /db_xref="UniProtKB/TrEMBL:Q7WFA6" FT /protein_id="CAE34737.1" FT /translation="MDKTDIGILKALQEDGRASAQQLSETVGLSAAPVWRRVKALEANK FT VITGYSAQVDRSKVGLQGCMFAQISLERHSAGTVETFERSVRDAPEILECYAVTGDSDF FT LLKILVESPEAYDRFLHRFLFNLPGIRQTRTIVVLRELKHEVRLPL" FT misc_feature complement(131572..131883) FT /note="HMMPfam hit to PF01037, DE AsnC family, score FT 1.1e-37" FT CDS 132084..135590 FT /transl_table=11 FT /locus_tag="BB4375" FT /product="putative pyruvate ferredoxin/flavodoxin FT oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2982" FT /db_xref="GOA:Q7WFA5" FT /db_xref="UniProtKB/TrEMBL:Q7WFA5" FT /protein_id="CAE34738.1" FT /translation="MDGTPAVDPHIDLDYQLGDNLTRTSGRVFLTGTQALVRMMLTQRR FT LDRDRGLNTAGFVSGYRGSPLGGVDMAMWKAGQALADNQVSFLPGINEDMAATAVMGTQ FT QAGVRADRKVDGVFAMWYGKGPGVDRAGDALHHGNAAGASRHGGVLVVVGDDHTAVSSS FT IPHASEASLIGWHMPIVHPASIDEYETFALWGWALSRYSGAWVAFKAVSETVECGQSFV FT LEPPAAYEMPDDPELPAEQLEYTARDFLSPAVELRMHRRLRAVRAFARRHSLDRLVCAA FT PRATLGIVTVGKAHLDTMEALHRLGLDTVGAQAPVRIYKPGLTWPLDGPRLIEFAQGLR FT HILVIEEKGAVVESQIKDLLFNLPQRPSVAGKTGLDGAELIPAAGQLRPSLLAAPLAAW FT LRRAGHMPGGAAPAAFACPAPLSNDADGMRRRPYFCSGCPHSTSTKVPEGSQALAGVGC FT HYMAAWMDRDTGGLTQMGGEGADWIGLSPYIEMPHVFQNMGEGTYYHSGYLAIRQAVAA FT RANITYKILFNDAVAMTGGQPVDGPISVPQICQQLRGENVARIVVTTDEPEKYRGVALG FT AGIDVHHRRDLDAVQRELRATPGVTVLIHDQTCAAEKRRRRKKNQFPDPPRRLLINSAV FT CEGCGDCGVQSNCLSVVPLETPYGRKRAIDQSSCNKDYSCVEGFCPSFVSVMGGKPRKS FT AAPAADHERLRARIARLPEPRPAPLEAPYRLLVAGMGGTGVITIGAIVSMAAHLQGLSA FT AVLDLTGLAQKGGTVVSHIRLAPSGTANGPVRLDWQQADAAILCDPVAAVAPDSLGALR FT RDHTRTTVNTYVAPVSDFTRNPDAPLRADALLAKIRHAAGEHVAALDAHAAAQALFGDS FT ILSNMFMLGHAWQRGDVPLALAALARAIELNGVAVAANRAAFDAGRLAAHEPQSMAQAL FT RPAAQVVQLHIPESFERAVERRVADLTAYQSAAYAQAYRDLVEQVAARERELAPAARAP FT RLAMAVARSLFKLMAYKDEYEVARLYTDDAFRAQLDSQFEGDYSLRLHLAPPLLARKDP FT RTGAPRKITLGPRTLTLMKALARLKGLRGTWFDPFGHTAERRMERALVAEYRATVIQLL FT AGLSVDRLAQAATIAALAETVRGYGHVKQASVRKYRDELERQLRRYQEPTGSPDVSLRQ FT TA" FT misc_feature 133302..133334 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 135896..138823 FT /transl_table=11 FT /gene="nrdA" FT /locus_tag="BB4376" FT /product="ribonucleoside-diphosphate reductase alpha chain" FT /EC_number="1.17.4.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP2983" FT /db_xref="GOA:Q7WFA4" FT /db_xref="InterPro:IPR013509" FT /db_xref="UniProtKB/TrEMBL:Q7WFA4" FT /protein_id="CAE34739.1" FT /translation="MQTTIASVTRPTAVPPAQSETSTDPNSGQWASYNIIRRNGSVVGF FT EPSKIAIAMTKAFLAVNGGQGAASARVRELVEQLTAQAVSALVRNRPAGGTFHIEDVQD FT QVELALMRSGEHDVARAYVLYRERRAQERAAAAEVLEKSSPAAAQEPTLSVVDNGVRRP FT LDLAALRATIEAAGEGLTQYTDTEAILKETVKNLYDGVPVDEVFKSAILAARALVEKDP FT AYSQVTARLLLHTIRKEVLGEEVSQADMATRYAEYFPAFIQRGIEGGLLDAKLAEYDLE FT RVAKALDGRRDLQFGYLGLQTLYDRYFLHVRGTRIELPQVFFMRVAMGLALREADREAR FT AIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAKYA FT GGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWH FT LDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSDCPDLHDKYG FT KAFEQAYAGYEAKVASGELKLFKKMPAVSLWRKMLSMLFETGHPWITFKDPCNIRSPQQ FT HVGVVHSSNLCTEITLNTNATEIAVCNLGSVNLVAHMKPSANGGYELDHDKLKRTIGVA FT MRMLDNVIDINYYAVDKARNSNERHRPVGMGIMGFQDCLHVMRVPYASQDAIDFADRSM FT EAVCYHAYWASSELAQERGRYQSYEGSLWSRGILPQDTLAMLREERGGNVDVDDSSSLD FT WDTLRSRIKEHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVND FT YLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRKLYATAFEVEPSWLVECASRR FT QKWIDQAQSLNIYMSGASGKKLDDTYKLAWQRGLKTTYYLRTLGATSAEKSTGRGGELN FT AVSAGDHGAGSAVSAAPVLPEPEIVGAVCTMRPGDPGFEECEACQ" FT misc_feature 135992..136294 FT /note="HMMPfam hit to PF03477, DE ATP cone domain, score FT 9.1e-17" FT misc_feature 136772..136999 FT /note="HMMPfam hit to PF00317, DE Ribonucleotide reductase, FT all-alpha domain, score 5.6e-28" FT misc_feature 137003..138640 FT /note="HMMPfam hit to PF02867, DE Ribonucleotide reductase, FT barrel domain, score 3.4e-177" FT misc_feature 138155..138223 FT /note="PS00089 Ribonucleotide reductase large subunit FT signature." FT CDS 138845..140041 FT /transl_table=11 FT /gene="nrdB" FT /locus_tag="BB4377" FT /product="ribonucleoside-diphosphate reductase beta chain" FT /EC_number="1.17.4.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP2984" FT /db_xref="GOA:Q7WFA3" FT /db_xref="InterPro:IPR000358" FT /db_xref="UniProtKB/TrEMBL:Q7WFA3" FT /protein_id="CAE34740.1" FT /translation="MLNWEEENIATKPATSPAPAGGREAAPAVRAATGVFGDAALPTPT FT APQHAASLGASDATAGRVKVADKRIINGETDVNQLVPFKYKWAWEKYLATCANHWMPQE FT INMSRDIALWKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFL FT LRQAFEEAIHTHAYQYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFHT FT GTPEADQKLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHC FT NFGIDLINTIKLENPHLWTPEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKS FT YLRFIANRRCQQIGIEPLFPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE" FT misc_feature 139046..139954 FT /note="HMMPfam hit to PF00268, DE Ribonucleotide reductase, FT small chain, score 2.7e-44" FT misc_feature 139547..139615 FT /note="1 probable transmembrane helix predicted for BB4377 FT by TMHMM2.0 at aa 235-257" FT CDS 140359..141036 FT /transl_table=11 FT /gene="bph1" FT /locus_tag="BB4378" FT /product="histone protein" FT /note="ortholog of Bordetella pertussis (BX470248) bpH1" FT /db_xref="GOA:Q7WFA2" FT /db_xref="InterPro:IPR005819" FT /db_xref="UniProtKB/TrEMBL:Q7WFA2" FT /protein_id="CAE34741.1" FT /translation="MATAKKAAKKAVKKPAAKKAAAKKATPAKKAAVKKVAVKKVAAKK FT PAVKKVAAKKPAAKKVAKKAVAKKAVAKKPAAKKVAKKAVAKKAVAKKAVAKKAVAKKA FT VAKKAVAKKAVAKKAPAKKAVAKKAVAKKAVAKKAVAKKAVAKKAVAKKAPAKKAAAKK FT APAKKAAAARKPAAKKPAAKKPAAKKAAPKKPATPPSTAAAPGAKTALNPAASWPFPTG FT GRP" FT CDS 141175..141750 FT /transl_table=11 FT /locus_tag="BB4379" FT /product="putative integral membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2986" FT /db_xref="GOA:Q7WFA1" FT /db_xref="InterPro:IPR003425" FT /db_xref="UniProtKB/TrEMBL:Q7WFA1" FT /protein_id="CAE34742.1" FT /translation="MATALMLGDIIRFLLEITFTLFGAALILRAWIHAVRLHPFNPLAR FT AIYQGTNWLVLPLRRVIPATGSIDWTSLIAAWVAALIYLILVWLSAVGALPPASALPSA FT MGSALLMVLKWTLNLMVWMTLIQAVLSWVNPLSPLMPLLQTLTAPLLDPIRRILPRTAI FT DFSPLVLLIGAQILLMMVARLAYGIFGV" FT misc_feature 141184..141441 FT /note="HMMPfam hit to PF02325, DE YGGT family, score 0.045" FT misc_feature join(141211..141279,141391..141459,141496..141564, FT 141676..141744) FT /note="4 probable transmembrane helices predicted for FT BB4379 by TMHMM2.0 at aa 13-35, 73-95, 108-130 and 168-190" FT misc_feature 141490..141726 FT /note="HMMPfam hit to PF02325, DE YGGT family, score 1e-05" FT CDS complement(141758..143221) FT /transl_table=11 FT /gene="dltA" FT /locus_tag="BB4380" FT /product="putative D-alanine-D-alanyl carrier protein FT ligase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2987" FT /db_xref="GOA:Q7WFA0" FT /db_xref="HSSP:1AMU" FT /db_xref="InterPro:IPR010071" FT /db_xref="UniProtKB/TrEMBL:Q7WFA0" FT /protein_id="CAE34743.1" FT /translation="MRGMYFDLRSFEFVSDARGGQADAVVGSDRVLTWQALREEACQWA FT ARARAHGIGPDVPVVIHGHKEAAFFVAMAGALLAGAPFVPVDTIYPPERVRRIVEIVRA FT AAVYDTQADVFRPGAAEPAALAERGLAYVMFTSGSTGDPKGVQIGRESVALLGDWLRDG FT LALGEAPVFMNQAPFSFDLSMYEVFGTLAAGGTCVLNAREQIAAPQQWLARLAGSGVTV FT WVSTPSFAHQQLANRDFSPQQLRALRTFLFCGEPLPVALARKLRQRFPEAAILNTYGPT FT EATVATTALVVDDAVLAEHDPLPVGYAKPASLLYVADDEICIVGDHVMRGYLNRPDLNQ FT AKLFVHHDGRRGFRTGDLGRMREDGLLFCRGRMDDQIKLNGYRIELAEIDAALHALPGV FT AGGACAVLRRPDGTAVRVIGFVAQRTVEQASFQLPAALQQWKAQLTGRLPSYMVPSELV FT ACPDLPVSNNHKIDRKKLLEIYAAIPAAA" FT misc_feature complement(142010..143125) FT /note="HMMPfam hit to PF00501, DE AMP-binding enzyme, score FT 3.9e-108" FT misc_feature complement(142070..142096) FT /note="PS00697 ATP-dependent DNA ligase AMP-binding site." FT misc_feature complement(142790..142825) FT /note="PS00455 Putative AMP-binding domain signature." FT misc_feature complement(142817..142840) FT /note="PS00030 Eukaryotic putative RNA-binding region RNP-1 FT signature." FT CDS complement(143232..144359) FT /transl_table=11 FT /gene="dltB" FT /locus_tag="BB4381" FT /product="putative protein involved in the transfer of FT D-alanine into teichoic acids" FT /note="ortholog of Bordetella pertussis (BX470248) BP2988" FT /db_xref="InterPro:IPR004299" FT /db_xref="UniProtKB/TrEMBL:Q7WF99" FT /protein_id="CAE34744.1" FT /translation="MELFGSFAFFGGALFGGLGLLLYRALGLPWRLGYRHLIGALCLAV FT WLAVFWTRPYQPLGLLAVASAALWAMRRGHLPTWAAVLLTMAPLLLLKCGITTMTGMLG FT LSFATFRAVDVLLFAPRNERISPLDYCIYLFFPLTLLAGPMYRWRNFQADLKRGYEGVT FT LETWLAGLELLIFGVIQKFGVAEAIWRYGLNTLDAHDYSLTGVALNASLYSFYLFFDFA FT GYSSMAIGVGMLFGFTLPVNFRNPLASANPQDFWRRWHISLSEWLRDVVFMPIYKALSK FT TAFFGRHRLAAQNIGILATLLAMGVWNGLALHYVVSGLMFGAYSVGHNLLVQHARTRPA FT LQAFLARRPVQWAGRALTLILAALALYVFSGRSPI" FT misc_feature complement(join(143247..143306,143364..143432, FT 143649..143717,143805..143873,143916..143969, FT 144084..144137,144195..144263,144282..144350)) FT /note="8 probable transmembrane helices predicted for FT BB4381 by TMHMM2.0 at aa 4-26, 33-55, 75-92, 131-148, FT 163-185, 215-237, 310-332 and 352-371" FT CDS complement(144367..144492) FT /transl_table=11 FT /locus_tag="BB4382" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2989" FT /db_xref="UniProtKB/TrEMBL:Q7WF98" FT /protein_id="CAE34745.1" FT /translation="MKRFFWHLCLYLGLILVFVLQAQPTTGSGGPIKVEFQYQQF" FT misc_feature complement(144427..144492) FT /note="Signal peptide predicted for BB4382 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.986 between residues 22 and 23" FT CDS complement(144489..145616) FT /transl_table=11 FT /gene="dltD" FT /locus_tag="BB4383" FT /product="putative protein involved in the transfer of FT D-alanine into teichoic acids" FT /note="ortholog of Bordetella pertussis (BX470248) BP2990" FT /db_xref="UniProtKB/TrEMBL:Q7WF97" FT /protein_id="CAE34746.1" FT /translation="MASAVALSLGLYWGADGALSALVHPHSSVASVRDNYLPNLGPDWG FT TQNVNLNRLGNALADGTLVVLGSSELSSHDLRFVPYRFFPQELKVPTLAYGHAMFQSYG FT IVSVLEAVADSLTPNTRLVIMVSPAWFASGGQLPRSAFAEHVTGPVWDRLWDKPATREQ FT MQDWIADNANWGLLWLIANGQVAELKDKIALWWNSRGERAPDRPRSPLAVPAHKYVSWP FT AAARLDAGRWHDLLGQARGIEAELGGHNPYDVRDDYYRQYLAPLNSPARNEFPEMPPMT FT RPELGDLARVMALLQQRKVRAYFVIQPFNPKLILDVERFDPVADAIKGMCARYGMGCLD FT MYSVPFQPGMVRDDMHLAELGWAIADQGIAEFFSR" FT CDS complement(145642..145881) FT /transl_table=11 FT /locus_tag="BB4384" FT /product="acyl carrier protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2991" FT /db_xref="GOA:Q7WF96" FT /db_xref="InterPro:IPR006163" FT /db_xref="UniProtKB/TrEMBL:Q7WF96" FT /protein_id="CAE34747.1" FT /translation="MHTEQALHTRIADIVESIILKKVTPDTALISSGLVDSLAAVDITL FT AVESEYGCSIPAPEIAEHLQSVRTLAGYVAANSQ" FT CDS complement(146203..146706) FT /transl_table=11 FT /gene="pcp" FT /locus_tag="BB4385" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2992" FT /db_xref="GOA:Q7WF95" FT /db_xref="InterPro:IPR008816" FT /db_xref="UniProtKB/TrEMBL:Q7WF95" FT /protein_id="CAE34748.1" FT /translation="MNYMHSPSVVAGRARRLLAVAAVAGSVAVLAGCANPSASSGVYTY FT GQAQREQIVRTGTVTGVRPITIQNDKSSGVGMVAGGALGGVAGNAVGGGTGRTIATVGG FT VILGALAGNAIENRAGKSSGYEITVRLDNGETRVVAQEADVPISVGQRVQVISGAGPTR FT VTPY" FT misc_feature complement(146587..146706) FT /note="Signal peptide predicted for BB4385 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.986) with cleavage site FT probability 0.567 between residues 40 and 41" FT misc_feature complement(146608..146640) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(146880..147821) FT /transl_table=11 FT /locus_tag="BB4386" FT /product="putative carbohydrate kinase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2993" FT /db_xref="GOA:Q7WF94" FT /db_xref="InterPro:IPR011611" FT /db_xref="UniProtKB/TrEMBL:Q7WF94" FT /protein_id="CAE34749.1" FT /translation="MTAPVLVCGSMAFDTIAVFEGRFKEHILAERIQSLSVSFLVPAMR FT KEYGGCAGNIAYNLKLLGGQPVPVATVGEDAGEYLARLSGLGIDVSRIQVVPGTFTAQC FT FITTDLEDNQIAAFHPGAMEFSSGNDLSDAQAAWAIIAPDSKAGMFAHAERLHARGIPF FT IFDLGQAMPLFDGADLERMLKLAQALTVNDYEAGVVEQRTGRSLAEIASGLRAAVVTRG FT AHGATVMAGGQTIEVAPVQAQAVVDPTGCGDAHRAGLLYGLTSGWGWADSCRLGNLMGA FT IKIASRGPQNHAPSRSEIDTLMRANYGIGLPD" FT misc_feature complement(146934..147818) FT /note="HMMPfam hit to PF00294, DE pfkB family carbohydrate FT kinase, score 1e-36" FT misc_feature complement(147603..147677) FT /note="PS00583 pfkB family of carbohydrate kinases FT signature 1." FT CDS complement(147833..148942) FT /transl_table=11 FT /locus_tag="BB4387" FT /product="possible membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2994" FT /db_xref="InterPro:IPR011723" FT /db_xref="UniProtKB/TrEMBL:Q7WF93" FT /protein_id="CAE34750.1" FT /translation="MALTTRCPQCGAAFRVVADQLRVRNGLVRCGECATVFDGRACLVP FT APDAGAPRAAAPPVPSAPPSDPPFDPPYAHRAASEPAAPATQAPPAVLRGRADMQRGDA FT PPVDEDEPDAMADGAPEDEADWDAAPRPESAEAGWRPILPRDPAHDDREPAFRIGRTAT FT ACAAADAEDAVQVPGEVRTRYSNAVDSGRTPPEFLDDDRIQARQLVRRLWAYACVLGVL FT ALAAQLVYVYRGAIAGAAPALRPVLEQACVPLQCSVGHARRIERISITSSSLRPAAGAA FT QGDDARTRLTLNVVLRNRYDRPQEWPALVLDLTDISDTVVARKIILPQDYLPSQAGPAF FT AAGSEINLAIPVEVAGLQVNGYQLDKFFP" FT misc_feature complement(148241..148309) FT /note="1 probable transmembrane helix predicted for BB4387 FT by TMHMM2.0 at aa 212-234" FT CDS complement(148968..149891) FT /transl_table=11 FT /gene="prmA" FT /locus_tag="BB4388" FT /product="ribosomal protein L11 methyltransferase" FT /EC_number="2.1.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP2995" FT /db_xref="GOA:Q7WF92" FT /db_xref="InterPro:IPR004498" FT /db_xref="UniProtKB/Swiss-Prot:Q7WF92" FT /protein_id="CAE34751.1" FT /translation="MRELVLNCREAQADALSDALLEAGVLSVSVEDADLGTEAERPLFG FT EPGTEPQVQAWERNCVVALLPDGADPAQILEQAIAAAGLDPALAHGWSLREVPDADWVR FT LTQSQFGPIPISERLWIVPSWHRDDPAVPGLVPDAARDAIHIELDPGLAFGTGSHPTTH FT LCLAWLEAELPAGARLLDYGCGSGILAIAARKLGAGETVAVDIDPQAVQSTVDNAEVNQ FT VRLQAMLPDALPAGEFQVVVANILSNPLKVLAPMLAGRVAPGGHLVLSGVLERQADEVA FT AAYAPWLTMSVWRERDGWVCLHGVKA" FT misc_feature complement(149880..149891) FT /note="PS00228 Tubulin-beta mRNA autoregulation signal." FT CDS complement(149910..151256) FT /transl_table=11 FT /gene="fabG" FT /locus_tag="BB4389" FT /product="biotin carboxylase" FT /EC_number="6.3.4.14" FT /note="ortholog of Bordetella pertussis (BX470248) BP2996" FT /db_xref="GOA:Q7WF91" FT /db_xref="HSSP:1BNC" FT /db_xref="InterPro:IPR013817" FT /db_xref="UniProtKB/TrEMBL:Q7WF91" FT /protein_id="CAE34752.1" FT /translation="MFEKILIANRGEIALRIQRACRELGIKTVVVHSEADRTAKYVRLA FT DESVCIGPAPSRESYLNMPALISAAEVTDAEAIHPGYGFLAENADFAERVEKSGFVFIG FT PRPETIRQMGDKVSAKRAMIEAGVPVVPGSEGALPDDPQEILRIAREVGYPVIIKASGG FT GGGRGMRVVYTEAALLNAVNMTRSEAGAAFNNPEVYLEKFLENPRHVEIQVLADGGRNA FT VWLGERDCSMQRRHQKVIEEAPAPGIPRRLIERIGDRCADACRKMGYRGAGTFEFLYEN FT GEFYFIEMNTRIQVEHPVTELITGVDVVQQQILIAAGEKFTLRQRDIQFKGHALECRIN FT AEDPFRFVPSPGRITNWHVPGGPGVRIDSHAFNGYFVPPNYDSMIAKVITYGDTREQAL FT ARMRIALSEMVVEGISTNIPLHRELLQDARFIEGGTSIHYLEHKLAQRP" FT misc_feature complement(149934..150251) FT /note="HMMPfam hit to PF02785, DE Biotin carboxylase FT C-terminal domain, score 1.1e-61" FT misc_feature complement(150270..150914) FT /note="HMMPfam hit to PF02786, DE Carbamoyl-phosphate FT synthase L chain, ATP binding domain, score 1.7e-107" FT misc_feature complement(150378..150401) FT /note="PS00867 Carbamoyl-phosphate synthase subdomain FT signature 2." FT misc_feature complement(150753..150797) FT /note="PS00866 Carbamoyl-phosphate synthase subdomain FT signature 1." FT misc_feature complement(150918..151256) FT /note="HMMPfam hit to PF00289, DE Carbamoyl-phosphate FT synthase L chain, N-terminal domain, score 4.2e-53" FT CDS complement(151266..151715) FT /transl_table=11 FT /gene="fabE" FT /locus_tag="BB4390" FT /product="biotin carboxyl carrier protein of acetyl-CoA FT carboxylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2997" FT /db_xref="GOA:Q7WF90" FT /db_xref="HSSP:1BDO" FT /db_xref="InterPro:IPR000089" FT /db_xref="UniProtKB/TrEMBL:Q7WF90" FT /protein_id="CAE34753.1" FT /translation="MDLRKLKTLIDLVAESGIAELEITEGEGKVRIVKFSQALQPVAYH FT MPEAVAPAAAPAAAAAPAAEAAPAAPQGHVVKAPMVGTFYRAPNPGAAPFVDVGQSVKE FT GDPLCIIEAMKLLNEIEADKAGVIKEILVENGEPVEYGQPLFIIG" FT misc_feature complement(151272..151496) FT /note="HMMPfam hit to PF00364, DE Biotin-requiring enzyme, FT score 8.3e-36" FT misc_feature complement(151350..151403) FT /note="PS00188 Biotin-requiring enzymes attachment site." FT CDS complement(151805..152239) FT /transl_table=11 FT /gene="aroQ" FT /gene_synonym="aroD" FT /locus_tag="BB4391" FT /product="3-dehydroquinate dehydratase" FT /EC_number="4.2.1.10" FT /note="ortholog of Bordetella pertussis (BX470248) BP2998" FT /db_xref="GOA:Q7WF89" FT /db_xref="InterPro:IPR018509" FT /db_xref="UniProtKB/Swiss-Prot:Q7WF89" FT /protein_id="CAE34754.1" FT /translation="MAQRILVLHGPNLNLLGTREPHIYGSLTLAQIDQGLAALAGQLGV FT ALTSWQSNHEGALVERIQAAAADGTDFIIINAAAYTHTSVAIRDALAAVAIPFIEVHLS FT NLYKRDSFRQHSYLSDLAIGLITGLGADGYEAALRYAARH" FT misc_feature complement(151811..152233) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01220, DE Dehydroquinase class II, FT score 7.3e-78" FT CDS complement(152318..152866) FT /transl_table=11 FT /locus_tag="BB4392" FT /product="thioredoxin" FT /note="ortholog of Bordetella pertussis (BX470248) BP2999" FT /db_xref="GOA:Q7WF88" FT /db_xref="HSSP:1FB6" FT /db_xref="InterPro:IPR012335" FT /db_xref="UniProtKB/TrEMBL:Q7WF88" FT /protein_id="CAE34755.1" FT /translation="MNRRLFLYAGVAAAAAASGGYFLAERRNARPAPSAAAPAEGAGDP FT LAQLRQLALPDLQGTPRKLADWGGQPLVVNFWATWCAPCVKEMPELDALQKKYPQVRFV FT GIGVDTADNMRKFVEKIPVSYPLLVMGAGAIDTLRSLGNPSGGLPFTLLLSADGSMKRK FT ILGQIVYDDLDRSVAGLSA" FT misc_feature complement(152594..152650) FT /note="PS00194 Thioredoxin family active site." FT misc_feature complement(152819..152866) FT /note="Signal peptide predicted for BB4392 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.268 between residues 16 and 17" FT CDS 152949..154319 FT /transl_table=11 FT /gene="mpl" FT /locus_tag="BB4393" FT /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate FT ligase" FT /EC_number="6.3.2.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3000" FT /db_xref="GOA:Q7WF87" FT /db_xref="HSSP:1GQY" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7WF87" FT /protein_id="CAE34756.1" FT /translation="MHLHILGICGTFMGGLALIARSAGHKVTGCDTGVYPPMSTQLAEQ FT GIELIEGFGADQLALAPDLFVIGNVVSRGNPLMEAILDSGARYISGPQWLGEHILPGAH FT VLAVAGTHGKTTTSSMLAWILQCAQRQPNFLIGGVAPDLQVSARYAPGARPFVIEADEY FT DTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAIETQFHHLVRTVPSNGQLVLPT FT DAPALERVLERGCWTPVARFGPGGQWQAGPADEQGAFEVSVDGRDAGTVRWTLGGEHNR FT RNALAALAAARHAGVAPAEGIEALSRFGGVKRRMELRGTVNGIRVYDDFAHHPTAIATT FT IEGLRRQVGAARILAVLEPRSNTMKLGTMAARLPEALAGADLVFCFGDHAGKHALGWDP FT ARVLAPLGERAAGYDDLPALVRAVAAAARPGDHVLVMSNGGFGGVHGKLLDALAQPR" FT misc_feature 153060..153857 FT /note="HMMPfam hit to PF01225, DE Mur ligase family, FT catalytic domain, score 2.8e-44" FT misc_feature 153879..154136 FT /note="HMMPfam hit to PF02875, DE Mur ligase family, FT glutamate ligase domain, score 1.1e-12" FT CDS 154330..154923 FT /transl_table=11 FT /locus_tag="BB4394" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3001" FT /db_xref="InterPro:IPR008886" FT /db_xref="UniProtKB/TrEMBL:Q7WF86" FT /protein_id="CAE34757.1" FT /translation="MPILYLHGFRSSPDSFKARLLAQAMHQRGLAGQWQCPQLPASPRQ FT AAELALALAREQLAGQQDPRRLTVIGSSLGGYYATWLAERLGCQAVLLNPAVQAARDLA FT TQVGEHRMYHSDAPFHFLPEYVEELRALYADPLTHPERYFLVAATGDEVLDWREMRDRY FT PGCRQRIVQGGDHGLSDFPRWMPEVLEFALGSPH" FT CDS 154995..156878 FT /transl_table=11 FT /locus_tag="BB4395" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3002" FT /db_xref="GOA:Q7WF85" FT /db_xref="InterPro:IPR001900" FT /db_xref="UniProtKB/TrEMBL:Q7WF85" FT /protein_id="CAE34758.1" FT /translation="MYVFYDDDGGFKAGNILSETDASLQVESETGKRSKIKRASTLFTF FT AAPEPAALMAQAATLAEDIDLQFLWECAPQEEFDAPALAAEYFGHAPGPVEQAALLMRL FT HGAPAYFHRRGKGRYRPAPPDILAAALAALEKKRLQAEQQQQWIDEMAQGRLPEAIALA FT AESLLVRPDKNSMQWKAFDAACTQLQKTPERLLLDLGAWPHPLALHKRRFLAVNFPRGV FT GFPAMDVPSIERELPLAEGEIYSVDDITTTEIDDALSVSALPDGKIRVGIHVAAPGLAI FT TRGSEHDKLARTRLSTVYMPGEKIPMQPDNVIQAFSLDAGRPVPAVSLYVTADPRTGAI FT EASETRLERIVVRENLRHNDLDAQISEAALADPDAPLAYGHWLRPLWQLAQALGAQREA FT VRGKPENNTRVEYSFYLDGSPDDPDTPVRLVPRQRNAPLDRMVAEYMILANNIWGGLLN FT QHGVPGIYRSQQAGRVRMSTQALPHEAIGVPQYAWSTSPLRRYVDLVNQWQLIAAVEHG FT VSARLVAPFKPRDADLYAIIGAFDAQYAAWADFQNAMERYWCMRWLKQQGISRTTAHVL FT REDLVRLANAPLVTRVGGLPELERGAAVQIDIMNMDELALELDCRYLGPAD" FT misc_feature 155379..156542 FT /note="HMMPfam hit to PF00773, DE RNB-like protein, score FT 3.3e-09" FT CDS 156916..157815 FT /transl_table=11 FT /locus_tag="BB4396" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3003" FT /db_xref="GOA:Q7WF84" FT /db_xref="InterPro:IPR006260" FT /db_xref="UniProtKB/TrEMBL:Q7WF84" FT /protein_id="CAE34759.1" FT /translation="MRRSASSSSILTRFWRWLGAPAQHYLLVGTAISLLVHAGALAWRF FT AGPAPARPQASTLEIVLVNARTDSAPVTAQVLAQSQVDGGGNAARGLAATPLPQTGRNA FT ETIVLEAMRKRQAQLEAEQDRLLTQLQSQARTGQERQPVHPWPDASEPGLDPREQPGVI FT QNAQIATLASRVQAYNAQPRKEFVAPAAQASRHAAYLDAWRTRIETIGTRHYPEDARGR FT IYGSLRITVTVRADGSLADFEIDQPSPHAVLNQAARRIVQMAAPFPPFPPEMARDTDVL FT VITRTWHFVNDSLETTAP" FT misc_feature 156916..157029 FT /note="Signal peptide predicted for BB4396 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.851) with cleavage site FT probability 0.609 between residues 38 and 39" FT CDS 157812..158675 FT /transl_table=11 FT /gene="aroE" FT /locus_tag="BB4397" FT /product="shikimate 5-dehydrogenase" FT /EC_number="1.1.1.25" FT /note="ortholog of Bordetella pertussis (BX470248) BP3004" FT /db_xref="GOA:Q7WF83" FT /db_xref="HSSP:1NYT" FT /db_xref="InterPro:IPR006151" FT /db_xref="UniProtKB/Swiss-Prot:Q7WF83" FT /protein_id="CAE34760.1" FT /translation="MTLPASPPRYAVIGNPIAHSRSPQIHAMFSAQTGRPLRYERLLAP FT VDGFLPTVQAFRESGGLGLNVTVPFKLEAYALAEARLSERARLAGAVNTLSWRDGAWHG FT CNTDGVGLVNDLLRLGVALAGARVLLVGAGGAARGVLQPLAAAGCARIHIVNRTAARAA FT ELAAAWRAAAPRTGTQVSAGALAQAAEPGGWDVAINATASGLQDAAPDLPGGLYAPDAL FT AYDMMYGARPTAFMRQAEADGAARCADGLGMLVGQAAESFHIWHGVRPDPGPVLLALRT FT ELLAAG" FT misc_feature 157884..158615 FT /note="HMMPfam hit to PF01488, DE Shikimate / quinate FT 5-dehydrogenase, score 5.9e-72" FT misc_feature 158226..158258 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 158696..159424 FT /transl_table=11 FT /gene="mtgA" FT /locus_tag="BB4398" FT /product="monofunctional biosynthetic peptidoglycan FT transglycosylase" FT /EC_number="2.4.2.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0326" FT /db_xref="GOA:Q7WF82" FT /db_xref="InterPro:IPR011812" FT /db_xref="UniProtKB/Swiss-Prot:Q7WF82" FT /protein_id="CAE34761.1" FT /translation="MPKPTARRLNWFRVITAVIMAVLCIAILYQLWMFSLVVWYAYRDP FT GSSAIMRQELARLRERDPEAELKYQWVPYDRISNTLKQAVVASEDANFTEHDGVEWDAI FT RKAWEYNQRQAERGRTKMRGGSTITQQLAKNLFLSGSRSYLRKGQELVLAYMIEHVMPK FT ERILELYLNVAEWGVGVFGAEAAARHYYNTSAARLGAGQAARLAAMLPNPRYYDRHRNT FT GYLNSRTATLTRRMRMVEIP" FT misc_feature 158696..158824 FT /note="Signal peptide predicted for BB4398 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.722) with cleavage site FT probability 0.438 between residues 43 and 44" FT misc_feature 158729..158797 FT /note="1 probable transmembrane helix predicted for BB4398 FT by TMHMM2.0 at aa 12-34" FT misc_feature 158840..159364 FT /note="HMMPfam hit to PF00912, DE Transglycosylase, score FT 5.3e-59" FT CDS 159431..160699 FT /transl_table=11 FT /locus_tag="BB4399" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0325" FT /db_xref="GOA:Q7WF81" FT /db_xref="InterPro:IPR005495" FT /db_xref="UniProtKB/TrEMBL:Q7WF81" FT /protein_id="CAE34762.1" FT /translation="MRAPVTRGCANRRVFVNLSRFRALSAASPTMRTARRYLAREIYRS FT CAVVLLALLGLFTFFALVDDLDNVGDKFSMLALFYMQALALPTRLYDLLPIGLLIGAIL FT ALAGLAQRNELVILRVSGVSGMRLLGMLWVITIPLMIGATLLSEFVTPAAEIKSGEADL FT TFRGKAGGGRLNSGYWFKEPTPQNGTRIINIKTLLADGQVKDVTLYEFRSDLEMTALWT FT APNGRFSRGDLVLTDVSETRIDEHAPSALADAKQPKEPPARVTKVPELKLDTTLSPERL FT LARVLTPERMSALTLVDYIEYLRHNQLQYDRQVVALWRKLVYPFTLLVMITIAAPIGFM FT QTRRGGVGAKVFIGILLGVGFFMLNQLALNVGMLSRWPPWITALGPNLGALLLAFGALS FT MMEYRHAMARFMQHRWPWRKVPA" FT misc_feature 159431..159619 FT /note="Signal peptide predicted for BB4399 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.948) with cleavage site FT probability 0.941 between residues 63 and 64" FT misc_feature 159536..160630 FT /note="HMMPfam hit to PF03739, DE Predicted permease FT YjgP/YjgQ family, score 1.2e-39" FT misc_feature join(159551..159619,159692..159760,159773..159841, FT 160391..160450,160469..160537,160565..160633) FT /note="6 probable transmembrane helices predicted for FT BB4399 by TMHMM2.0 at aa 41-63, 88-110, 115-137, 321-340, FT 347-369 and 379-401" FT CDS 160696..161529 FT /transl_table=11 FT /gene="apaH" FT /locus_tag="BB4400" FT /product="diadenosine-tetraphosphatase" FT /EC_number="3.6.1.41" FT /note="ortholog of Bordetella pertussis (BX470248) BP0324" FT /db_xref="GOA:Q7WF80" FT /db_xref="InterPro:IPR004843" FT /db_xref="UniProtKB/Swiss-Prot:Q7WF80" FT /protein_id="CAE34763.1" FT /translation="MKGSIWTIGDVQGCCAPLAELLAHPEIAGDTDSRFWFAGDLVNRG FT PQSLAVLRRIMAMGERCTAVLGNHDLHLLAAYAGVRKPSKSDTLDEVLQAPDAVDLIDW FT LRFRPLAHYEAGHLMVHAGVLAKWDVAKTLALAGEVEQALRGPNWRKALQKMYGNEPAT FT WKDDHTGGKRMRVIINALTRIRLCTPSGHMEFATKVAPGAWPAGLVPWFDVPNRATRDV FT TVVFGHWSTLGLLMRPDVICLDTGCVWGGALSALRLHDRKLVQVKCKRFQDPNGD" FT misc_feature 160702..161121 FT /note="HMMPfam hit to PF00149, DE Calcineurin-like FT phosphoesterase, score 5.2e-10" FT CDS complement(161566..162306) FT /transl_table=11 FT /locus_tag="BB4401" FT /product="acyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0323" FT /db_xref="GOA:Q7WF79" FT /db_xref="InterPro:IPR002123" FT /db_xref="UniProtKB/TrEMBL:Q7WF79" FT /protein_id="CAE34764.1" FT /translation="MKLLRFVFRVFLVVPWVLFGLLCVTLVYRGLRQDQRARLNRYWSA FT CLMRLCGIAVHVRGAPRLRGGVLWVANHVSWIDIFVVNSVRATSFVAKSEIRAWPVIGY FT LAAGAGTLFIDRTQRHAVHAMGQSIHDCFARGDAVGLFPEGTTTEGFTTRPFHASLFEP FT ARAEGVDIQPVALRFMHRGQRSGFAAFVGEETLVANLWRVLGTTGLAVEVVFLEPLPTQ FT HAEGHQPTRLELSHMARNAIAGEL" FT misc_feature complement(161596..162138) FT /note="HMMPfam hit to PF01553, DE Acyltransferase, score FT 1.6e-16" FT misc_feature complement(162220..162288) FT /note="1 probable transmembrane helix predicted for BB4401 FT by TMHMM2.0 at aa 7-29" FT CDS complement(162303..163601) FT /transl_table=11 FT /gene="pyrC" FT /gene_synonym="pyrC'" FT /gene_synonym="pyrX" FT /locus_tag="BB4402" FT /product="dihydroorotase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0322" FT /db_xref="GOA:Q7WF78" FT /db_xref="InterPro:IPR006680" FT /db_xref="UniProtKB/TrEMBL:Q7WF78" FT /protein_id="CAE34765.1" FT /translation="MTVRTVRIAGGRLIDPASGADARADLYLADGRIAAIGQAPAGFQA FT QQHIDARGLAVLPGLVDLSARVHGAGLAPLACEMQAALAGGVTRLVVPPDTDPPLDEPG FT RVEMLRHRAHQAGQAQLHPLGALTEGLRGERLSEMAALAEAGCVAFSQAGLPVADTRVL FT WRAMQYARTFGLALWLRPLDPWMGRDGVAAAGAYASRLGLAEVPVQAETLALHTIFELQ FT RATGARVHLMRLSSAAGVALVRAARREGLPLTCDVAAHQIHLTDVDIGFFDSRFRLDPP FT LRGQRDRDAIVAGLADGTIDAICSDHRPVGDTGKLLPFAEAEAGASGLELLLSLTLKWA FT QRERVPLARALALVTSAPAAILRAATAALPPCGELAAGAPADLCLVDLDADWTAAPAAM FT RSRSVHTPFAGMMLPGRVRATLVAGRTVWETPA" FT misc_feature complement(162321..163463) FT /note="HMMPfam hit to PF00744, DE Dihydroorotase-like, FT score 1.5e-32" FT CDS complement(163598..164551) FT /transl_table=11 FT /gene="pyrB" FT /locus_tag="BB4403" FT /product="aspartate carbamoyltransferase" FT /EC_number="2.1.3.2" FT /note="ortholog of Bordetella pertussis (BX470248) BP0321" FT /db_xref="GOA:Q7WF77" FT /db_xref="InterPro:IPR002082" FT /db_xref="UniProtKB/Swiss-Prot:Q7WF77" FT /protein_id="CAE34766.1" FT /translation="MLNPQLNRHGELIHLLSTEGLPRRIIEQILDLAATFVPAPGQEFP FT KLPLLHGKSVFNLFFENSTRTRTTFEIAAKRLSADVVNLNIAASSTSKGESLLDTIANL FT SAMQADLFVVRHGASGAPYLIAQHVAPHVHVINAGDGRHAHPTQALLDMYTIRHHKGDF FT NQLTVAIVGDVLHSRVARSDIHALTTLGVPEVRVVAPATLLPEGLAQMGVRVCTDMEEG FT LRDADVVIMLRLQNERMRGALLPSAHEYFKHYGLTQARLALARPDAIVMHPGPMNRGVE FT IASEVADSGQAVILDQVTFGIAVRMAAMSLVAGVRP" FT misc_feature complement(163613..164065) FT /note="HMMPfam hit to PF00185, DE Aspartate/ornithine FT carbamoyltransferase, Asp/Orn binding domain, score FT 9.6e-23" FT misc_feature complement(164072..164512) FT /note="HMMPfam hit to PF02729, DE Aspartate/ornithine FT carbamoyltransferase, carbamoyl-P binding domain, score FT 5.2e-32" FT misc_feature complement(164354..164377) FT /note="PS00097 Aspartate and ornithine FT carbamoyltransferases signature." FT CDS complement(164565..164966) FT /transl_table=11 FT /locus_tag="BB4404" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0320" FT /db_xref="GOA:Q7WF76" FT /db_xref="HSSP:1OVQ" FT /db_xref="InterPro:IPR006641" FT /db_xref="UniProtKB/Swiss-Prot:Q7WF76" FT /protein_id="CAE34767.1" FT /translation="MPEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSETRAARFGR FT IGQLLQEWQPQRAVVGLPLTLDGQEQPASARARRFANQLHGRFGLAVELVDERGSSMEA FT QQLLGTHAADDAVAAAVILQRYLDTLPQP" FT misc_feature complement(164580..164957) FT /note="HMMPfam hit to PF03652, DE Uncharacterised protein FT family (UPF0081), score 9.2e-40" FT CDS complement(164959..165636) FT /transl_table=11 FT /locus_tag="BB4405" FT /product="putative transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0319" FT /db_xref="InterPro:IPR003774" FT /db_xref="UniProtKB/Swiss-Prot:Q7WF75" FT /protein_id="CAE34768.1" FT /translation="MAAPAAAFAGLPRLSRLPATKGAAMTDSHRPDADDIPDDDELSTD FT FSNQFLLAMPGVVEGSLAGTVIYICEHTRRGALGLVINRPTDLTLATLFERIDLKLEIG FT PVKDEMVFFGGPVQTDRGFVLHAPAGDYTSSINLGELALTTSRDVLQAVADGNGPARML FT VTLGYAGWGAGQLESEMAQNSWLSVGADSHIIFDVAPEDRYPAALKLLGVDPVMLAGGA FT GHA" FT misc_feature complement(164965..165507) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02622, DE Uncharacterized ACR, FT COG1678, score 4.2e-52" FT CDS complement(165652..165816) FT /transl_table=11 FT /gene="rubA" FT /locus_tag="BB4406" FT /product="rubredoxin" FT /note="ortholog of Bordetella pertussis (BX470248) BP0318" FT /db_xref="GOA:Q7WF74" FT /db_xref="HSSP:1BRF" FT /db_xref="InterPro:IPR001052" FT /db_xref="UniProtKB/TrEMBL:Q7WF74" FT /protein_id="CAE34769.1" FT /translation="MRTWMCLICGWVYDEEAGLPDEGIAPGTRWEDVPPNWVCPECGAR FT KEDFELMEI" FT misc_feature complement(165670..165816) FT /note="HMMPfam hit to PF00301, DE Rubredoxin, score FT 2.4e-26" FT misc_feature complement(165688..165720) FT /note="PS00202 Rubredoxin signature." FT CDS 165933..166781 FT /transl_table=11 FT /gene="thiD" FT /locus_tag="BB4407" FT /product="phosphomethylpyrimidine kinase" FT /EC_number="2.7.4.7" FT /note="ortholog of Bordetella pertussis (BX470248) BP0317" FT /db_xref="GOA:Q7WF73" FT /db_xref="InterPro:IPR013749" FT /db_xref="UniProtKB/TrEMBL:Q7WF73" FT /protein_id="CAE34770.1" FT /translation="MRPDYPFFAVVPVLDSVTPPLVLIIGPVDPSGADGLPADAVSCAR FT LGCHALAAVTALTVQDTAGIEEVHPVAPELLDDQARCLLEDMSVQAIKVGALLSAEAAS FT VAAQIAADYSHVPLVLHLGQRTPLPQDAADQDDADDLLAATLELVLPQTDLVVVEHVRL FT AQWQADGSIDTSGAPSPAHALLAGGAQWALVLGSPVRPGHQVNMLVGPEGQTSTWPWQA FT PPDRNGDTGGVAAIAAAAMLAQGMEMPRAVEQALAHAERTIAASFLPGMGRRLPNRVAQ FT S" FT CDS 166778..167431 FT /transl_table=11 FT /gene="thiE" FT /locus_tag="BB4408" FT /product="thiamine-phosphate pyrophosphorylase" FT /EC_number="2.5.1.3" FT /note="ortholog of Bordetella pertussis (BX470248) BP0316" FT /db_xref="GOA:Q7WF72" FT /db_xref="InterPro:IPR003733" FT /db_xref="UniProtKB/Swiss-Prot:Q7WF72" FT /protein_id="CAE34771.1" FT /translation="MKTLRFPAGLYGITPEWDDTDRLLAAVRAAAAGGMTALQLRRKLA FT DERLRAAQARALAPLCRELGVVFLVNDHWKLALDVGADGAHLGRDDADPATVRAQAGAG FT LLLGVSCYNDLRRADALLAAGADYVAFGTVFASPTKPEAVHAPLQTLTEARARLLACPA FT PRPAVVAIGGITPANVSQVAQAGADSAAVISGLFEAPDIQAAARACAAAFSVNP" FT misc_feature 166796..167416 FT /note="HMMPfam hit to PF02581, DE Thiamine monophosphate FT synthase/TENI, score 4.7e-38" FT CDS 167448..168731 FT /transl_table=11 FT /gene="hemL" FT /gene_synonym="gsa" FT /gene_synonym="popC" FT /locus_tag="BB4409" FT /product="glutamate-1-semialdehyde 2,1-aminomutase" FT /EC_number="5.4.3.8" FT /note="ortholog of Bordetella pertussis (BX470248) BP0315" FT /db_xref="GOA:Q7WF71" FT /db_xref="HSSP:1DKA" FT /db_xref="InterPro:IPR015421" FT /db_xref="UniProtKB/Swiss-Prot:Q7WF71" FT /protein_id="CAE34772.1" FT /translation="MSTNAELFDRACRSIPGGVNSPVRAFRSVGGTPRFIQRAQGPYVW FT DAEGKQYIDYVGSWGPAILGHAHPEVVRAVQEAAVHGLSFGAPTEAEVELAEMLIARLP FT SLEQVRLVSSGTEATMTAIRLARGATGRHKIIKFEGCYHGHSDSLLVKAGSGLLTFGNP FT SSAGVPPEFVAHTLTLEFNNLAAVDAAFSQHGAEIACVIVEPVAGNMNLIKPAEGFLAG FT LRELCTRHGAVLIFDEVMTGFRVGPQGVQGLTGVRPDLTTLAKVIGGGMPVGAFGGRAD FT LMAHIAPLGGVYQAGTLSGNPVAVAAGLATMRLIGEPGFYERLSAQTARLAQGLQERAR FT AAGVPFSADAIGGMFGLYFGDRVPASFAEVSACDTEAFKRFFHAMLERGIHFAPSAFEA FT GFVSATHDDAVIDATLEAAEQVFATLRA" FT misc_feature 167514..168725 FT /note="HMMPfam hit to PF00202, DE Aminotransferase FT class-III, score 6.6e-112" FT misc_feature 168147..168257 FT /note="PS00600 Aminotransferases class-III FT pyridoxal-phosphate attachment site." FT CDS 168971..170596 FT /transl_table=11 FT /locus_tag="BB4410" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0314" FT /db_xref="InterPro:IPR005646" FT /db_xref="UniProtKB/TrEMBL:Q7WF70" FT /protein_id="CAE34773.1" FT /translation="MTIANALQLELDEATCVLSAAYAPTGENDTLPTWDTLVAAVQARG FT WPATVLDQISAIVFIEQCRDTAGPVEACIGEVRNGTFELEVAEDRMSAQLTLRAPKGGQ FT PVGESDLLAGLQAHGIVHGLIPEALRQALERGACEALEIARGTLPEAGEPARFESLLDA FT LKTRLSEDDENAIIDYRNLGDLTLVSAGTPLMRRIPATPGQPGTDVLGGPVAPPAVADP FT PFAPKLNGVEVDPEDPGLLRAAIAGSPMLVQHGATVNSLVEVPAVDLSSGNIDFEGTLR FT VKGDITAGMHVRVSGDVVVNGTIEAAHVEAGGNVTVNGGIIGSAEGVADSRGGSRMARI FT VSGGSVKARFIDNAQVRAEKNVAAEREIRQSTVTAGETITVGPPGSQQGVITGGTAHAY FT KSVHAGTLGSMAGIPTVVRAGLNPHANAKRAALETRARELEEEKAKLEKLILFLHNNPA FT KNVNNMSERARQTHAKISADLVELQAEDARLAKELQPLETAMIVASRRFFGGVTLHLGV FT KVTEFLEDQVGGKAVLEQGELAIR" FT misc_feature 169208..170590 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03961, DE Protein of unknown FT function (DUF342), score 7.9e-48" FT misc_feature 169622..169642 FT /note="PS00092 N-6 Adenine-specific DNA methylases FT signature." FT CDS complement(170690..171091) FT /transl_table=11 FT /locus_tag="BB4411" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0313" FT /db_xref="HSSP:1J7H" FT /db_xref="InterPro:IPR006175" FT /db_xref="UniProtKB/TrEMBL:Q7WF69" FT /protein_id="CAE34774.1" FT /translation="MKILQPPDWLAPRGYSNGTLTEMAVGSKLVFVGGQVGWNGQQQFE FT TDDFAEQVRQTLVNVLAIMAEGGAGPQHIVRMTWYVKNKAEYVASYPEIGKHYRELIGR FT HFPAMTAVEVADLIEDRAKVEIEVTAVIP" FT misc_feature complement(170696..171070) FT /note="HMMPfam hit to PF01042, DE Endoribonuclease L-PSP, FT score 9.2e-18" FT CDS complement(171116..171550) FT /transl_table=11 FT /locus_tag="BB4412" FT /product="probable 4-hydroxybenzoyl CoA thioesterase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0312" FT /db_xref="UniProtKB/TrEMBL:Q7WF68" FT /protein_id="CAE34775.1" FT /translation="MAEPFVSEVEVRFRHCDPAGIVFYPRYFEMINDFVEEWFDKGMGL FT PFHALHVDRHIGTPLASVQCDFSAPSRWHERLRQELSVRRIGGASFRADVRFLGPDDRL FT RLSADLTIVTVDLRSMRSTPLPDDLRARMQAFLSPQARDA" FT misc_feature complement(171146..171496) FT /note="HMMPfam hit to PF03061, DE 4-hydroxybenzoyl-CoA FT thioesterase, score 6.9e-15" FT CDS complement(171552..173201) FT /transl_table=11 FT /locus_tag="BB4413" FT /product="probable acid-coenzyme A ligase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0311" FT /db_xref="GOA:Q7WF67" FT /db_xref="HSSP:1BA3" FT /db_xref="InterPro:IPR000873" FT /db_xref="UniProtKB/TrEMBL:Q7WF67" FT /protein_id="CAE34776.1" FT /translation="MEPSAHLDSFARDNLPPASEWPEFLLDGPDVAYPKRFNCAAELVD FT AMVRQGHGERVALRWRQDERIETMTYGQLQALTNRIARVLVEDMGLVPGNRLLLRGPNN FT PMMAAAWLGAIKAGLVTVPTMPLLRAKELRQIIEKAQVQAVLCDARLKDEALHCAAPAH FT EHYCPGLGQVMLFNDGAPDALDARAAAKPEDFPACDTAADDVCLIAFTSGTTGAPKGCM FT HFHRDVLAMCDLFPRHVIRPGPDDIFCGTPPLAFTFGLGGLLCFPLRVGASAVLAEKLS FT PDTLLALIHDFRATISFTAPTFYRQMAALAPKYDISSLRKSVSAGEALPDATRQLWRQA FT TGIEMIDGIGGTEMIHVFVSSPPEEVRQGAIGKAVPGYVAEVVDEQMRPVPNGTVGRLA FT IKGPTGCRYLADERQQRFVQQGWNLPGDTFLRDDDGYFFYQARNDDMIISAGYNIAGPE FT VEDALLRHEAVAECGVVGAPDDDRGQLVKAYVVLKPGYEPDDALAAALQAFVKAGIAPY FT KYPRAIEFVDALPRTETGKLQRFALRRMAAEG" FT misc_feature complement(171780..172994) FT /note="HMMPfam hit to PF00501, DE AMP-binding enzyme, score FT 4.5e-98" FT misc_feature complement(172545..172580) FT /note="PS00455 Putative AMP-binding domain signature." FT CDS complement(173242..174411) FT /transl_table=11 FT /locus_tag="BB4414" FT /product="putative acyl-CoA dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0310" FT /db_xref="GOA:Q7WF66" FT /db_xref="HSSP:1JQI" FT /db_xref="InterPro:IPR006092" FT /db_xref="UniProtKB/TrEMBL:Q7WF66" FT /protein_id="CAE34777.1" FT /translation="MPDLSWQDWPFFDPLHRELARELEAWCGPALAAIDHRDTDAACRA FT LVRSLGQAGWLRYAVPAGPGGGWGGRLPKVDSRAVCILRETLARHDGLADFAFAMQGLG FT SGAISLMGSDALRQQYLPPVARGEAIAAFALSEPEAGSDVAALACEARADGDGYVLNGE FT KTWISNGGIADFYCVFARTGEAPGARGISAFVVDAGTPGLEIAERIDLIAPHPLARLRF FT ADCRIPASRRLGEAGQGFKLAMMTLDIFRASVAAAALGFARRALDEGLARARGRRMFGQ FT TLADLQLTQAALGDMATAVDASALLTYRAAWMRDVQEVRTTREAAMAKMTATESAQAVI FT DRALQMFGGAGVVAGATVERLYREIRALRIYEGATEVQKLIIARELLKS" FT misc_feature complement(173251..173703) FT /note="HMMPfam hit to PF00441, DE Acyl-CoA dehydrogenase, FT C-terminal domain, score 1.7e-56" FT misc_feature complement(173713..174012) FT /note="HMMPfam hit to PF02770, DE Acyl-CoA dehydrogenase, FT middle domain, score 2e-30" FT misc_feature complement(173974..174012) FT /note="PS00072 Acyl-CoA dehydrogenases signature 1." FT CDS complement(174414..175271) FT /transl_table=11 FT /locus_tag="BB4415" FT /product="putative enoyl-CoA hydratase/isomerase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0309" FT /db_xref="GOA:Q7WF65" FT /db_xref="HSSP:1DCI" FT /db_xref="InterPro:IPR018376" FT /db_xref="UniProtKB/TrEMBL:Q7WF65" FT /protein_id="CAE34778.1" FT /translation="MTQSEQVHTMKHHKRPYAGHAARTFQWQVSDDGKIATITLNRPER FT KNPLTFDSYAELRDLFRGLVYATDIKVVVLTGAGGNFCSGGDVHEIIGPLTRMSMPELL FT DFTRMTGDLVKAMRACPQPIVAAVDGVCAGAGAMMALASDMRLGTPAARTAFLFTRVGL FT AGADMGACTLLPRMIGQGRASELLYTGRAMNADEGLQWGFFNALHDPAELSGAALALAE FT QLAAGPTFAHGVTKKLLHQEWNMGVDEAIEAEAQAQAICMQTQDFRRAYDAFVARRKPV FT FEGD" FT misc_feature complement(174645..175166) FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 1.3e-25" FT misc_feature complement(174837..174899) FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS complement(175293..176084) FT /transl_table=11 FT /locus_tag="BB4416" FT /product="probable short chain dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0308" FT /db_xref="GOA:Q7WF64" FT /db_xref="HSSP:1Q7B" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7WF64" FT /protein_id="CAE34779.1" FT /translation="MSTSTQALAGRHALVTGGARGIGLACARALLARGASVTLLGRDGG FT ALDAAADQLARAGRVQTASADVADAASVRAAFEQAARALGPVAILVNNAGQAVSQRFDR FT TDEALWQRMLAVNLTGTFHCIQAALPGMLDGGWGRVVNVASTAGLIGYAYVSAYCAAKH FT GVVGLTRALALETARKGVTVNAVCPGYTETDIVRGAVANIVEKTGLSEAEARATLAERN FT PQGRLVNPEEVAETVAWLALPASAAINGQAIAVDGGEVMTG" FT misc_feature complement(175308..176060) FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 1.6e-85" FT misc_feature complement(175566..175652) FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT CDS complement(176081..178432) FT /transl_table=11 FT /locus_tag="BB4417" FT /product="probable bifunctional hydroxylase/oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0306" FT /db_xref="GOA:Q7WF63" FT /db_xref="HSSP:1GWJ" FT /db_xref="InterPro:IPR003042" FT /db_xref="UniProtKB/TrEMBL:Q7WF63" FT /protein_id="CAE34780.1" FT /translation="MKIVCLGGGPAGLYFGLLMKLQDPANEVTVIERNRPYDTFGWGVV FT FSDATMDNLRQADPVSAKTIGDAFNHWDDIEIHYRDRSIRTSGHGFIGIGRKHLLNILQ FT ARCEEVGVKLVFETFVQDDQALARDYDADLVIAADGINSVVRTRYADTFTPDIDQRRCR FT FVWLGTTKVFDAFTFAFVQNEHGWFQAHAYRFEDGLSTFIVETPEETWQSAGIEGMSQE FT DGIAYCERLFAPWLDGHRLISNAKHIRGAAIWIRFPRVICPHWVRWNRLQTPRGERDVP FT VVLMGDAAHTAHFSIGSGTKLALEDAIELARCLDGRRGDLRGALQHYEDVRSVEVLKIQ FT NAARNSTEWFENVRRYANLEPEQFAYSLLTRSQRISHENLRLRDAAWLQGYEAWIAERA FT GAGPAPGAQAPLPMLTPFQARSVRLANRIVVSPMAMYSCVDGVPGEFHLVHLGARALGG FT AGLVMVEMTCTSPDARITPGCPGLWNDEQAGAFGRIVDFVHGNSAARIGIQLGHAGRKG FT STQLGWQQMDHPLPEGNWPLLSASALPYLPGVSQTPRAMTRADMDRVREDFAAAARRAA FT RAGFDWLELHCAHGYLLSSFISPLTNQRDDEYGGSLENRLRYPLEVFRAVRQAWPAELP FT MSVRISAHDWVEGGITADDAVEIARHFKAAGADMIDCSSGQVSPDQQPVYGRMYQTPFA FT DRVRNEAGIATIAVGAIFEADHANGIIASGRADLCALARPHLADAAWTLREAARVGYRD FT VHWPDQYVAGKRQLETNFERAAMLAQLDIK" FT misc_feature complement(176171..177199) FT /note="HMMPfam hit to PF00724, DE NADH:flavin FT oxidoreductase / NADH oxidase family, score 5.8e-69" FT misc_feature complement(176642..176680) FT /note="PS00383 Tyrosine specific protein phosphatases FT active site." FT misc_feature complement(176891..176935) FT /note="PS00399 ATP-citrate lyase / succinyl-CoA ligases FT family active site." FT misc_feature complement(177401..178042) FT /note="HMMPfam hit to PF01360, DE Monooxygenase, score FT 2e-09" FT CDS complement(178638..179231) FT /transl_table=11 FT /locus_tag="BB4418" FT /product="high-affinity branched-chain amino acid FT transporter, ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0305" FT /db_xref="GOA:Q7WF62" FT /db_xref="HSSP:1JI0" FT /db_xref="InterPro:IPR003439" FT /db_xref="UniProtKB/TrEMBL:Q7WF62" FT /protein_id="CAE34781.1" FT /translation="MGKTTLLRTLFGQLPLRAGSVRFAGQEIGGWSPDRIARAGLAIVP FT EGRQCFPNLTVREHLTAFVAARNPSIGQPWTPQRVFELFPRLGERAGNMGNQLSGGEQQ FT MLAIGRALVTNPRLLILDEATEGLAPKIREEIWTCLARLREAGQTILVIDKYVERLLGL FT ADRHVILERGKVVWKGDSAALDADRGLWERYLGV" FT misc_feature complement(178713..179228) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1e-28" FT misc_feature complement(178896..178940) FT /note="PS00211 ABC transporters family signature." FT CDS complement(179336..180130) FT /transl_table=11 FT /locus_tag="BB4419" FT /product="putative branched-chain amino acid transporter, FT ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0304" FT /db_xref="GOA:Q7WF61" FT /db_xref="HSSP:1G6H" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WF61" FT /protein_id="CAE34782.1" FT /translation="MNAPAASPALRADGLVRRFGALVATDRVSLTLAPGEIHALIGPNG FT AGKSTLIHLLSGTLPADAGSLKMGERDITALNAHQRVAAGLSRSYQITNIFKSFSVLDN FT LLLAVQARAGSSFRFWRRRAAERELYDAAHELARQCAIDAGMLQRPAGTLPHGEQRKVE FT FALALAARPSVLLLDEPMAGMGPDETLRLTELIETLRGRAAMLLVEHDMQAVFRLADRI FT SVLVYGRVIATGTPEQIRANPEVRQAYLGDEEQTAALEGARC" FT misc_feature complement(179447..180028) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 2.4e-36" FT misc_feature complement(179984..180007) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(180127..181092) FT /transl_table=11 FT /locus_tag="BB4420" FT /product="probable branched-chain amino acid transport FT system, permease component" FT /note="ortholog of Bordetella pertussis (BX470248) BP0303" FT /db_xref="GOA:Q7WF60" FT /db_xref="InterPro:IPR001851" FT /db_xref="UniProtKB/TrEMBL:Q7WF60" FT /protein_id="CAE34783.1" FT /translation="MHRSTLWTLALLAALALFPLVAPALGLDFYISFVRRVLIYALAAT FT SLNLILGYGGMVALGHAAFFGAGAYAVGILGAAGITSALLAWPAAIALAGALAWITGAI FT SLRTRGVYFIMITLAFAQMVYYVFISLRQYGGEDGLNLSGYSTLPGLDLANDLTFYYLV FT LVLFAVLMGVFGRVVDSRFGAALQGIRENESRMESLGYPVYRLKLTAFVISGAAAGLAG FT ALLANHNLFISPSLMHWTQSANLLIMVLVGGIGLRYGGVAGAVVMLVLEEVLRQWTEYW FT HLPLGVLLLCVVLGAPRGLVGLVGPWFAGRAGADSTRAGT" FT misc_feature complement(180178..181017) FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 7.4e-14" FT misc_feature complement(join(180181..180249,180286..180354, FT 180397..180465,180568..180636,180694..180762, FT 180775..180843,180853..180912,180916..180984, FT 181012..181080)) FT /note="9 probable transmembrane helices predicted for FT BB4420 by TMHMM2.0 at aa 5-27, 37-59, 61-80, 84-106, FT 111-133, 153-175, 210-232, 247-269 and 282-304" FT misc_feature complement(181015..181092) FT /note="Signal peptide predicted for BB4420 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.617 between residues 26 and 27" FT CDS complement(181096..182016) FT /transl_table=11 FT /locus_tag="BB4421" FT /product="probable branched-chain amino acid transport FT system, permease component" FT /note="ortholog of Bordetella pertussis (BX470248) BP0302" FT /db_xref="GOA:Q7WF59" FT /db_xref="InterPro:IPR001851" FT /db_xref="UniProtKB/TrEMBL:Q7WF59" FT /protein_id="CAE34784.1" FT /translation="MTFTLIVEQLLNGLQFGLMLFLIAAGLTLVFGIMDIMNLAHGSLY FT MAGAYVAAETMQRTGSFTAAVLVAALATGLVGAVLELTLIRKLAVRDHLAQVLGTYAVI FT LIANDLVKMIWGPAPVMLNMPAALSGPVRLLPDLLYPAYRLMIIVFGLAAAAGLYWFVT FT RTRAGVLVRAGASNRQMATLMGVRVPLLFLGVFVLGAMLAAVAGALLGPVTAVQIGMGE FT GILILVLVCIVIGGIGSIRGAFVGALLVGMVDTAGRAFLPMLLRQVFPPAVASSVGPTL FT AAIAIYVLMAGVLVFRPAGLFPARG" FT misc_feature complement(181102..182001) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 1e-22" FT misc_feature complement(join(181129..181197,181225..181293, FT 181306..181374,181402..181470,181531..181599, FT 181657..181725,181762..181830,181915..181983)) FT /note="8 probable transmembrane helices predicted for FT BB4421 by TMHMM2.0 at aa 12-34, 63-85, 98-120, 140-162, FT 183-205, 215-237, 242-264 and 274-296" FT misc_feature complement(181861..182016) FT /note="Signal peptide predicted for BB4421 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.761) with cleavage site FT probability 0.492 between residues 52 and 53" FT CDS complement(182113..183276) FT /transl_table=11 FT /locus_tag="BB4422" FT /product="putative ABC transporter substrate binding FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0301" FT /db_xref="InterPro:IPR001828" FT /db_xref="UniProtKB/TrEMBL:Q7WF58" FT /protein_id="CAE34785.1" FT /translation="MRLIPSLLAALALAPGLANADPIKVGIANDISGPFAALGAEARDG FT FNLAIKELGGKLGGQQAEFLQTDMGGNPDQARQLVTRYIQREKVDFFTGPIGSNVALAV FT GPALFAAKIPYLSNNPGPSQYAGAQCNKFWFGNSYQNDAFHEAAGKVAADRGYKKVFIM FT APDYPAGKDALTGFKRGYKTAVAEELYTKLGQIDYAAELAQIRAAKPDAVYIFLPGGMG FT INFVKQFVSTGLAQGTALVGPGFSADEDVIQAVGEPMLGMVNTAQWAHDLDVPQNKKFV FT EAFRKEYNGRYPSVYAAQAYDVIMSIDAAVKQAGGKASDRDAIVKALEQADYPSVRGSF FT TYGKNHYPIQAYYARVVEKDGSGRITNKLTGKVFDKYQDVYVGDCKL" FT misc_feature complement(183217..183276) FT /note="Signal peptide predicted for BB4422 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.996 between residues 20 and 21" FT CDS 183499..184389 FT /transl_table=11 FT /locus_tag="BB4423" FT /product="putative esterase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0300" FT /db_xref="GOA:Q7WF57" FT /db_xref="InterPro:IPR002018" FT /db_xref="UniProtKB/TrEMBL:Q7WF57" FT /protein_id="CAE34786.1" FT /translation="MAAIYRHYDRAALDVQYNARATVPDIQPILKRYAEASQQARDALP FT CTLDVPYGDHPDELLDIFPADGVRAAPVLVYIHGGYWRALNKSDSCNMAPAFTRAGALV FT VAVNYSLAPAVTLDRIVDQNRRALAWIHRHIAEYGGDPARITICGSSAGGHLVGALLAG FT GWHGQYGAPEDIVHSAAPLSGLFDLRPLVHTHINEWMRMSPADAERNSPALHMPRRGCP FT IVVSYGETETDEFKRQSDDFLRDWQALGYPGRYIPMPGTNHYDIVLTLNEPAGALTQAI FT FALMGLAPPPTPSIR" FT CDS 184393..184896 FT /transl_table=11 FT /locus_tag="BB4424" FT /product="MarR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0299" FT /db_xref="GOA:Q7WF56" FT /db_xref="InterPro:IPR000835" FT /db_xref="UniProtKB/TrEMBL:Q7WF56" FT /protein_id="CAE34787.1" FT /translation="MIDTPDLETRAAPEDHHALRLWLRMLTCCNLIESEIRSRLRTEFD FT TTLPRFDLMAQLQRAPKGMKMGELSRHMMVTNGNITGITDQLEKEGLVVRTKVESDRRS FT SVLKLTPQGKRTFARMARAHESWVTGMLDDLPEASRHAMYKALGELKLQVVAHRALAQR FT DGAS" FT misc_feature 184528..184842 FT /note="HMMPfam hit to PF01047, DE MarR family, score 1e-20" FT misc_feature 184627..184731 FT /note="PS01117 Bacterial regulatory proteins, marR family FT signature." FT CDS 184939..185937 FT /transl_table=11 FT /locus_tag="BB4425" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0298" FT /db_xref="UniProtKB/TrEMBL:Q7WF55" FT /protein_id="CAE34788.1" FT /translation="MISLSVPGGNFYLAMALSLFCLSTLLTWAVTLAANRGARRWLAAH FT RRLGPALMVLLAVAGAIFPYQHFSQWRQAQREAREQAARRAVLEAARRVDGIDMPAGTE FT LRLAEPGRLDSFQGADFPVPAHVAGLRVTRLVRHGAAPGGRQGWSVTLDGNQRIDGWLC FT SRGHQVELAVRDGTPAFAGCHLAAGNEIGGAAVPPGAWVAARQPGPWLLRTEGSDPLDV FT GRLPLLKVDMTLDDRRQVAGFEGLLARELTLGEMTYPTGTRVASAPAGLAQAQAGDLLF FT SPSRGRAARRGAGTEIVAGKSVLQAPDGTVRAVLANRDAGVLDFAAVRMAP" FT misc_feature 184939..185025 FT /note="Signal peptide predicted for BB4425 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.992) with cleavage site FT probability 0.734 between residues 29 and 30" FT misc_feature join(184975..185043,185080..185133) FT /note="2 probable transmembrane helices predicted for FT BB4425 by TMHMM2.0 at aa 13-35 and 48-65" FT CDS 186005..187231 FT /transl_table=11 FT /gene="argJ" FT /locus_tag="BB4426" FT /product="arginine biosynthesis bifunctional protein" FT /EC_number="2.3.1.35" FT /EC_number="2.3.1.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP3807" FT /db_xref="GOA:Q7WF54" FT /db_xref="InterPro:IPR002813" FT /db_xref="UniProtKB/Swiss-Prot:Q7WF54" FT /protein_id="CAE34789.1" FT /translation="MAVNLQIPSESEILPVAGVEIGVAEAGIRKAGRRDLTVFRLAPGS FT AVAGVFTRNRFRAAPVQVCEAHLAQGGPIRALVVNTGNANAGTGAPGLKNAQDTCAALG FT KLLDVPAEQILPFSTGVILEPLPMDRLTAGLPAAVADLRADGWYGAAHGIMTTDTLPKI FT HSRRVDIGGKTVTITGISKGAGMIRPNMATMLGFLATDAGIAQPLLRQLAIELADVSFN FT RITVDGDTSTNDSFILIATGQAGVTVDSAGDAAYAALRDALAAAATDLAQKIVRDAEGA FT TKFMTIRVEEAGNTEEALKVAYAVAHSPLVKTAFFASDPNLGRILAAIGYAGIDDLDVS FT RLRLWLGDVLVAVDGGRNPDYQEADGQRVMKQAEILVRIALGRGQVADTVYTCDFSHEY FT VTINADYRS" FT misc_feature 186059..187225 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01960, DE ArgJ family, score FT 1.4e-175" FT CDS 187431..188297 FT /transl_table=11 FT /locus_tag="BB4427" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3808" FT /db_xref="GOA:Q7WF53" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WF53" FT /protein_id="CAE34790.1" FT /translation="MTATDLTPLLARAERVLAQLEAWLPPAPPDIDWSAHAYRWRKRGS FT RGWLDAVRHVARIELDDLQHIERQKDIIDRNTRQFLESKPANNVLMTGARGTGKSSLVK FT AMLAAYGDRGLRLIEVDKSDLGDLADIVELVAARPERYIVFCDDLSFEEGEAGYKALKS FT VLDGSVAASGDNVLIYATSNRRHLMPEYMSENLAAKHQPDGEIHPGETVEEKISLSERF FT GLWLSFYPFKQDDYLDIVYHWLRELNCPADQIEASRTEALQWTLERGSRSGRVAYQFAR FT DWAARHV" FT misc_feature 187707..187730 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 188290..189252 FT /transl_table=11 FT /locus_tag="BB4428" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3809" FT /db_xref="GOA:Q7WF52" FT /db_xref="HSSP:1PUQ" FT /db_xref="InterPro:IPR020084" FT /db_xref="UniProtKB/TrEMBL:Q7WF52" FT /protein_id="CAE34791.1" FT /translation="MSEKIVDVAAGLILRPDGQLLLGQRPEGKPWAGWWELPGGKLEPG FT ETVLQALARELHEELGIRVTEAHPWVTYVHVYPHTTVRLAFCHVTGWEGEPRGLENQRL FT EWVDPARAHEVGDLLPAALPPLRWLQLPTAYAISAIGAPAALADFTARLRQALDGGLKL FT VLLREPDWPGGADAASLRDAMQAILAQCRAAGARLLVSSRHPQAWWREADGVHLTARDA FT QALKQRPALPEGALVGVSAHGHAEIVHARDLGADFAVLGPVLATASHPEQAPLGWPGFA FT AGIRDAGMPVYALGGQSPATLAEARLHGAHGIAGIRGLL" FT misc_feature 188302..188682 FT /note="HMMPfam hit to PF00293, DE NUDIX domain, score FT 9.6e-23" FT misc_feature 188407..188466 FT /note="PS00893 mutT domain signature." FT CDS complement(189263..190765) FT /transl_table=11 FT /locus_tag="BB4429" FT /product="putative outer membrane efflux protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3812" FT /db_xref="GOA:Q7WF51" FT /db_xref="InterPro:IPR010131" FT /db_xref="UniProtKB/TrEMBL:Q7WF51" FT /protein_id="CAE34792.1" FT /translation="MIRMPGFRFSVSPRRRLAVAALCAALGGCAVGPDYQRPAIDVGAA FT YKEAAAPQPGWTPAQPSDESARGQWWQVYGDPVLDGLVQQLNQGNYSVAQAEANYRQAQ FT ALVRNARAGFFPTIGAGADVTRSGSGGGSGAGSNGSSVGNQYSLSGSVSWEVDVWGRVR FT REVESSRAEAQASAADLAATRLSAQAALVQNYLQLRVLDEQKRLLDATVLAYERSLRLT FT QNRYEAGVVGKSDVAVARTQLENTRAQSIDLDWQRGQFEHAIAVLMGQAPSRFALPAQP FT FAQQLPDIPAGLPSQLLERRPDVAAAERRAAAANAQIGVAQAAWFPDLTLSASGGFRSG FT QFAEWLTAPARFWTLGPALAMTLFDGGARSARVEQARAAYDAQAAAYRQSVLTALREVE FT DYLVQLRVMEHEQQVQRNALESARESLRLARNQYEQGLIDYLSVAVLETTALNTERNAI FT SLLGSRLNASVQLIAALGGGWQGLPAEAAASAAAEPSAPSAP" FT misc_feature complement(189305..189898) FT /note="HMMPfam hit to PF02321, DE Outer membrane efflux FT protein, score 6.4e-50" FT misc_feature complement(189926..190531) FT /note="HMMPfam hit to PF02321, DE Outer membrane efflux FT protein, score 1.3e-39" FT misc_feature complement(190670..190765) FT /note="Signal peptide predicted for BB4429 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.994) with cleavage site FT probability 0.543 between residues 32 and 33" FT misc_feature complement(190679..190711) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(190762..193869) FT /transl_table=11 FT /locus_tag="BB4430" FT /product="AcrB/AcrD/AcrF family protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3813" FT /db_xref="GOA:Q7WF50" FT /db_xref="HSSP:1IWG" FT /db_xref="InterPro:IPR001036" FT /db_xref="UniProtKB/TrEMBL:Q7WF50" FT /protein_id="CAE34793.1" FT /translation="MILSAPFIVRPVATTLLCLGVVLAGLLAYRLLPVAPLPQVDIPTI FT SVSASLPGASPETMASSVATPLERSLGSIAGVTEMTSRSSQGSTRITLQFDLSRDVDGA FT ARDVQAAINAARSLLPTSLRSNPTYHKANPSAAPIMTLAMTSATLGQGKLYDLASTIVA FT QKLAQVNGVGEVTVGGSSLPAVRVNLIPGALANRGVSLDEVRQALSSANANRPKGMVEN FT DQYHWQVMASDQLDRAEQYRPLIVAWRDGAAVRLSDVASVEDSVEDLYQTGFYNDRKAI FT LMIVRRQADANIIETVDAVRAQLPQLAALLPGDVDLTVAQDRTPSIRASLHEAELTLVI FT AVGLVVLVVLLFLRRLRAAFIPSVAVPVSLIGTFCVMYLCGYTLNTISLMALIVATGFV FT VDDAIVVLENIMRHIERGATPMRAALRGSREVGFTVLSMSLSLVAVFIPILLMGGVAGR FT LFREFAVTLSASILVSLVVSLTLTPMMCARLLRAEPAAPRPPGRIGRLWTRLYGGMQGG FT YERSLGWALAHARLMMLILAATIGLNVYLYMVVPKGFFPQQDTGQLLGFFRGDQGTSFQ FT ATVPKLEYFRKVILADPAVQSVTAYAGGRGGSNSSFMQIQLKPLEERGVSADTVINRLR FT GRLQNEPGARMFLVAQQDIHIGGRQSSGSYDYTLMSGDLALLREWMPRVQRAMAALPEI FT TDVDADVEDKGRQIDLVIDRDAATRLGVSMATISAVLNNSFSQRQVSVIYGPLNQYHVV FT MGVDPRFAQDIESLKQVHVIAADGQRVPLAAFAQLKVANAPLSVSHQGLFVADTISFSL FT SPGVSLDQATGAIDAAVARIGLPSDQIQAGFQGTAAELQKTLARQPWLILAALVTMYIV FT LGILYESLVHPLTILSTLPSAGIGALLALMLLGHEFTLIALIGVFLLIGIVKKNAIMMV FT DFALEAERRDGLDARAAILRACLTRFRPIMMTTMAAIFGALPLMLASGPGVEMRRPLGI FT TIVGGLVLSQILTLYTTPVVYLYLDRFRLWAARRRAARSAPDPTRP" FT misc_feature complement(190828..193863) FT /note="HMMPfam hit to PF00873, DE AcrB/AcrD/AcrF family, FT score 0" FT misc_feature complement(join(190831..190899,190927..190995, FT 191104..191172,191230..191298,192232..192300, FT 192415..192483,192502..192570,192724..192792, FT 192811..192864,193783..193851)) FT /note="10 probable transmembrane helices predicted for FT BB4430 by TMHMM2.0 at aa 7-29, 336-353, 360-382, 434-456, FT 463-485, 524-546, 858-880, 900-922, 959-981 and 991-1013" FT misc_feature complement(193798..193869) FT /note="Signal peptide predicted for BB4430 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.620) with cleavage site FT probability 0.370 between residues 24 and 25" FT CDS complement(193866..196967) FT /transl_table=11 FT /locus_tag="BB4431" FT /product="AcrB/AcrD/AcrF family protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3814" FT /db_xref="GOA:Q7WF49" FT /db_xref="HSSP:1IWG" FT /db_xref="InterPro:IPR001036" FT /db_xref="UniProtKB/TrEMBL:Q7WF49" FT /protein_id="CAE34794.1" FT /translation="MSPSRLFILRPVATALSMVAILIAGLIAYRLLPVSALPEVDYPTI FT QVVTLYPGASPDVMTSLVTSPLERQFGQMPGLNQMSSTSSGGASVITLQFSLDLSLDVA FT EQQVQAAINAASNLLPNDLPVPPTYNKVNPADAAVLTLAVTSPTMPLPQVRDLVDTRMA FT QRLSQIPGVGLVSVAGGQRPAVRVQVNPQALASAGLSLADLRTAVVGANVNQPKGNLDG FT PIRSTTINANDQLKSPTDYNDLIIAYRNDAPLRLSDVARAVQGAEDIRQAAWVGDKPAI FT LLNVQRQPGANVIDVVDRIHALLPQLRAAMPATLDLVVVADRTQTIRDSVADVQFEMLL FT AVGLVVLVTFLFLRSLTATVIPSVVVPLSLIGTFGIMYLAGFSINNLTLMALTIATGFV FT VDDAIVMIENIARHLEEGETPLQAALKGAAQIGFTLISLTFSLIAVLIPLLFMTEVVGR FT LFREFAVTLAVAILISLVVSLTLTPMMCARLLRPESEQRHGRFHQATGALIDRVIAGYD FT RMLQVVLRHQPLTLLVALGTFALTVLLYIVVPKGFFPQQDSGLIQAITQAPQTISFAAM FT SQRQQEAARIIVQDPDVAAVSSFIGVDGSNPTLNNGRMQIALKPQSERSGDLKTVMARL FT QDALHGGTDLGLTVYMQPVQDLTIEDRVSRTQYQMTLSNPDLAVLSEWAPRLVERLRQV FT PQLADVTYDLQDQGLQTWVEIDRDAASRLGITAAVIDEALYDAFGQRLISTVFTQSNQY FT RVVLEVLPQFRQSPQSLDHIHVPTASGAQVPLSSVARISEGRTVLAVNRLDQFPMTTVS FT FNLAPGASLSGAVEAISAVQAEIGLPLAIDTRFQGAALAFQNSLDSTLWLILAAVVTMY FT IVLGILYESYIHPITILSTLPSAGVGALLALLISGTDLDMIGIIGIILLIGIVKKNAIM FT MIDFALEAERKRGLAPREAIHEAALLRFRPILMTTLAALFGALPLMLSTGTGAELRQPL FT GLVMVGGLLVSQVLTLFTTPVIYLMFDRLARRRGGAGAAARQAP" FT misc_feature complement(193920..196961) FT /note="HMMPfam hit to PF00873, DE AcrB/AcrD/AcrF family, FT score 0" FT misc_feature complement(join(193926..193994,194037..194105, FT 194196..194264,194322..194390,195324..195392, FT 195513..195581,195615..195683,195822..195890, FT 195909..195977,196881..196949)) FT /note="10 probable transmembrane helices predicted for FT BB4431 by TMHMM2.0 at aa 7-29, 331-353, 360-382, 429-451, FT 463-485, 526-548, 860-882, 902-924, 955-977 and 992-1014" FT misc_feature complement(196860..196967) FT /note="Signal peptide predicted for BB4431 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.964) with cleavage site FT probability 0.699 between residues 36 and 37" FT CDS complement(196964..198214) FT /transl_table=11 FT /locus_tag="BB4432" FT /product="HlyD family secretion protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3815" FT /db_xref="GOA:Q7WF48" FT /db_xref="InterPro:IPR006143" FT /db_xref="UniProtKB/TrEMBL:Q7WF48" FT /protein_id="CAE34795.1" FT /translation="MPESRSVAPPARQGRRRLIAAAIAVLAVLALAWWLWPKDTGGQQG FT RPGGRGAMRGGPASMMNMAVPVRVGEARTQDIQIVLRALGTVTAYNTVTVRSRVDGELV FT KVAFQEGQHVKAGDLLAQVDPRPFEVALAQAQGQQQQNLAQLENARRDLQRYQTLYKQD FT SIARQQLDTQAALVRQYEGTIKSDRAAVDSARLQLDFSRITAPIAGRLGLRQVDQGNLI FT SSGDANGLVVITQTQPIAVVFTLPETQLPEVLAQLRAGRQLPVEAYDRADTRRIASGQL FT ETVDNQIDVATGTVKLKARFDNAEEALFPNQFVNVRLYVETRSGMTAIPNAAVQQGSAG FT AFVFLAQPDDTVAVRQVKLGAINGDWVAVNEGLQPGDKVVVEGMDRLRAGARIEIVTGT FT TPEAAAPVNTGAPRRTP" FT misc_feature complement(197072..197944) FT /note="HMMPfam hit to PF00529, DE HlyD family secretion FT protein, score 8.8e-21" FT misc_feature complement(198119..198214) FT /note="Signal peptide predicted for BB4432 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.804) with cleavage site FT probability 0.706 between residues 32 and 33" FT CDS complement(198395..199156) FT /transl_table=11 FT /locus_tag="BB4433" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3816" FT /db_xref="InterPro:IPR009777" FT /db_xref="UniProtKB/Swiss-Prot:P67691" FT /protein_id="CAE34796.1" FT /translation="MASVILYEYPFNERIRAYLRLEYLFDRLFFFAREGDARLHQIAVS FT SLFDLLDASERTDIKGAVLQDLERQRMALVGLRDHPGVAQDALEAMLRDMERVVAALAA FT QGKTGQALRENEWLVSLRGRLAVPGGATQVDMPSYHAWQNKPESVRCADLQSWLAPLLP FT LHEGLSMALRLLRESGRRADIAAEQGGYQQMLAGKIYHLLRVWVDPSLGVFPEISANKY FT MVWIRFSTQDGEVKPQQVSRDVAFQMSLCSS" FT misc_feature complement(198833..198856) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(199189..199839) FT /transl_table=11 FT /gene="coaE" FT /locus_tag="BB4434" FT /product="putative dephospho-CoA kinase" FT /EC_number="2.7.1.24" FT /note="ortholog of Bordetella pertussis (BX470248) BP3817" FT /db_xref="GOA:Q7WF46" FT /db_xref="InterPro:IPR001977" FT /db_xref="UniProtKB/Swiss-Prot:Q7WF46" FT /protein_id="CAE34797.1" FT /translation="MGMYKIGLTGGIGSGKSRVADMLAEWGASVIDADEISHALTAPGG FT AAMPAIAREFGPQAVAADGALDRAWMRDLVFREPAARGRLEALLHPLIGLHTEQAAAQA FT RGLYLVFVVPLLVESGRWRGRVDRICVVDCDPATQIARVQKRSGLTEPAIRRIMAAQAA FT RATRLEAADDVIVNDGATSPDTLRARARTLHDRWLALAGAASQPGGKAAGTPE" FT misc_feature complement(199291..199830) FT /note="HMMPfam hit to PF01121, DE Dephospho-CoA kinase, FT score 8.9e-68" FT misc_feature complement(199789..199812) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(199842..200681) FT /transl_table=11 FT /locus_tag="BB4435" FT /product="type 4 prepilin-like proteins leader peptide FT processing enzyme" FT /note="ortholog of Bordetella pertussis (BX470248) BP3818" FT /db_xref="GOA:Q7WF45" FT /db_xref="InterPro:IPR010627" FT /db_xref="UniProtKB/TrEMBL:Q7WF45" FT /protein_id="CAE34798.1" FT /translation="MWHVFPLDPALNVVLAALLGLVAGSWLSVVAHRLPRMMEREWRTA FT MREEDGGAESGYGLWRPAWHCPSCQAALRGWRAVPLAGWLLQRGRCGHCRQPIGLRYPM FT LELAAAVLFAACAWRFGPTPMALAAMGLTGALLALAWIDLEHSLLPDAVTLPLIWAGLL FT VNLDGALAPLPLAVLGAVAGYLFLWVIFHFFRLLTGRDGMGHGDFKLMAALGAWLGLGA FT LPWLLLGASLAGVLVGWSLRLAGRVGRGQPLPFGPYLALGGILMLLAAGRPAWLQFY" FT misc_feature complement(199848..200681) FT /note="HMMPfam hit to PF01478, DE Type IV leader peptidase FT family, score 2.2e-95" FT misc_feature complement(join(199854..199922,199965..200033, FT 200091..200159,200256..200324,200586..200654)) FT /note="5 probable transmembrane helices predicted for FT BB4435 by TMHMM2.0 at aa 10-32, 120-142, 175-197, 217-239 FT and 254-276" FT CDS 200922..201665 FT /transl_table=11 FT /locus_tag="BB4436" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3819" FT /db_xref="UniProtKB/TrEMBL:Q7WF44" FT /protein_id="CAE34799.1" FT /translation="MSAPLDTPALRLNTRFATGIVLAGTLALAGCAQQRSAGYYDPPGA FT STITDAQYQGQAAGYRTVVHAPSQLQIELKPNQPARQQNAQAQAGQQSTEDGTAVPEGQ FT AAPQPQPETASPGAQAIIPQAQTYQGTFPCFAAGLACEAQRVTLTLAPNGRWRSRTNYL FT DKQPQASAPVAEQGCWDATQERPPRVLLLDGSGNMRAELVMTANNVLRVRSVGGRTPNL FT NYNLTRQPDLDAIAELDKQAAPKCP" FT misc_feature 200982..201014 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(201748..202095) FT /transl_table=11 FT /locus_tag="BB4437" FT /product="putative regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3820" FT /db_xref="GOA:Q7WF43" FT /db_xref="HSSP:1FSE" FT /db_xref="InterPro:IPR000792" FT /db_xref="UniProtKB/TrEMBL:Q7WF43" FT /protein_id="CAE34800.1" FT /translation="MLPTPGNASSAQPALPVVSICHPIAPSVGGRAEARPPAALTARER FT QVAAYLAAGKANKVIAIDLGISRRTAEAHRARIFRKLGVRNAFELACRMCPHRRAATSM FT AGQGATPAGES" FT misc_feature complement(201790..201987) FT /note="HMMPfam hit to PF00196, DE Bacterial regulatory FT proteins, luxR family, score 3.4e-18" FT CDS complement(202193..203035) FT /transl_table=11 FT /gene="panC" FT /locus_tag="BB4438" FT /product="putative pantoate--beta-alanine ligase" FT /EC_number="6.3.2.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP3821" FT /db_xref="GOA:Q7WF42" FT /db_xref="HSSP:1IHO" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/Swiss-Prot:Q7WF42" FT /protein_id="CAE34801.1" FT /translation="MKVVHTIQDLRDHLRGQNRVAFVPTMGNLHEGHLALMKLARQHGD FT PVVTSIFVNRLQFGPNEDFDRYPRTLPDDVAKMERDRDVYLVFAPDEREMYPEPQNYRV FT LPPDDLGDILEGEFRPGFFTGVCTVVMKLLACVQPRVAVFGKKDYQQLMVVRNMCRQLQ FT LPVEILAHETVRADDGLALSSRNRYLSEAERAEAPVLYETLRGIAQRRAGGEQDPAALE FT RVAAQALADRGWKVDYVAVRRQRDLKAPDVAEMSAGEPLVALAAAKLGATRLIDNLEF" FT misc_feature complement(202199..203035) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02569, DE Pantoate-beta-alanine FT ligase, score 9.6e-101" FT CDS complement(203080..203967) FT /transl_table=11 FT /locus_tag="BB4439" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3822" FT /db_xref="GOA:Q7WF41" FT /db_xref="InterPro:IPR003768" FT /db_xref="UniProtKB/TrEMBL:Q7WF41" FT /protein_id="CAE34802.1" FT /translation="MAHNASISGDDLAALVEPQVDSTPDVVDSVAFARLYGEPLFQLPT FT DLYIPPDALEVFLEAFEGPLDLLLYLIRKQNFNVLDIPMADVTRQYLSYVEQIRVHNLE FT LAAEYLLMAAMLIEIKSRMLLPVKKSDTGEEPEDPRAELVRRLLEYEQMKLAAQKLDAL FT PQLGRDFVRSQAVAEISVERMLPEVSVDDLRAAWADIMKRARLNQHHHITREQLSVRDH FT MTHILRRLNDVRFMEFGELFLERINEGAPVAVVVVHFIAMLELARESLLDITQAEPYAP FT IYVRLAYASVAAAA" FT misc_feature complement(203107..203757) FT /note="HMMPfam hit to PF02616, DE Uncharacterized ACR, FT COG1354, score 3e-28" FT CDS complement(203994..204182) FT /transl_table=11 FT /locus_tag="BB4440" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3823" FT /db_xref="UniProtKB/TrEMBL:Q7WF40" FT /protein_id="CAE34803.1" FT /translation="MAKNYESEITRFLKEYKTAHPDTEQRQREGRARLWDKAQNTELLE FT GFRAARVPQKPYVYQAD" FT CDS 204280..205737 FT /transl_table=11 FT /locus_tag="BB4441" FT /product="putative transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3824" FT /db_xref="GOA:Q7WF39" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7WF39" FT /protein_id="CAE34804.1" FT /translation="MSADPATAAAPPPLANPDAARAARMIPFIVGCALFMQMLDSTVVA FT TALPAMAAALGSTPVRLNVAITSYLLAVAVFVPISGWAADRFGARRVLIAAIALFTLSS FT VGCALSQNLGQLVVARIVQGMAGAMMVPVGRIILLRTVPKQDLLKAMSFLSIPALLGPV FT IGPPVGGFMVTYMSWHWIFLINIPIGILGIALVLRFVSEIREENAPRLDLPGFLLSGIC FT LAALVSAFEALGHGLLPPLELGALIAAGLLCGVLYVWHSRRVEHPILDLSLLRTPTFAI FT SVLGGNLCRFAVGAVPFLLAMLLQVGFGLSPFAAGMITFASAAGALLMKFVATPIVTRY FT GFRRVLTINAILTGLFIVACAAFTPVTPAWAMIAVLLAGGFFRSLQFTAVNTLTYADIG FT PERMSRASSFAAMAQQLGISLGVGVAAVTLNVSMAARGAASLAIGDVVVGFMVVGALCM FT LSVLSFRRLAPSAGAQLQNVKVPRDGK" FT misc_feature join(204352..204420,204463..204531,204550..204618, FT 204628..204696,204733..204801,204811..204879, FT 204916..204975,204988..205056,205114..205182, FT 205210..205278,205312..205380,205396..205464, FT 205525..205593,205603..205671) FT /note="14 probable transmembrane helices predicted for FT BB4441 by TMHMM2.0 at aa 25-47, 62-84, 91-113, 117-139, FT 152-174, 178-200, 213-232, 237-259, 279-301, 311-333, FT 345-367, 373-395, 416-438 and 442-464" FT misc_feature 204355..205695 FT /note="HMMPfam hit to PF00083, DE Sugar (and other) FT transporter, score 0.015" FT CDS 205724..207250 FT /transl_table=11 FT /gene="glpK" FT /locus_tag="BB4442" FT /product="glycerol kinase" FT /EC_number="2.7.1.30" FT /note="ortholog of Bordetella pertussis (BX470248) BP3825" FT /db_xref="GOA:Q7WF38" FT /db_xref="InterPro:IPR005999" FT /db_xref="UniProtKB/Swiss-Prot:Q7WF38" FT /protein_id="CAE34805.1" FT /translation="MTANEFILALDQGTTSSRAIVFDRAGTVRGMGQREFRQHYPRPGW FT VEHDAGEIWQSQLEVAREALRNAGASAADLAALGITNQRETTLIWERATGRPLARAIVW FT QDRRTAAMCEKLLHDGHGRMLQERTGLVVDAYFSGTKLAWLLDHVPGARKMAERGELAF FT GTVDTWLVWQLTGGAVHSTDPSNASRTMLFDLHAQDWSDDILALLNIPRGILPRIAPSS FT ARIGETLPEWLGGSIPIAGVAGDQQAATFGQACFTPGMAKNTYGTGCFMLMNVGDAPVA FT SRHNLLSTVGWSLPAGNATHATYMVEGGVFMAGAAVQWLRDGLGIIQRSADIEALAASV FT ADTDDVFMVPAFAGLGAPHWDPYARGTLVGMTRGTTRAHIARATLESIALQSAELLSCM FT NADSGIPLSELRVDGGAARNDLLMQMQADLLGVPVVRPRVPESTALGAAGLAGLAVGFW FT SSLDEFGAQWQAERTFEPAWPADVREARMQRWRQAVELSKGWSRPAAGHA" FT misc_feature 205739..206479 FT /note="HMMPfam hit to PF00370, DE FGGY family of FT carbohydrate kinases, N-terminal domain, score 6.2e-102" FT misc_feature 206129..206167 FT /note="PS00933 FGGY family of carbohydrate kinases FT signature 1." FT misc_feature 206486..207175 FT /note="HMMPfam hit to PF02782, DE FGGY family of FT carbohydrate kinases, C-terminal domain, score 9.4e-79" FT misc_feature 206819..206881 FT /note="PS00445 FGGY family of carbohydrate kinases FT signature 2." FT CDS complement(207269..207736) FT /transl_table=11 FT /locus_tag="BB4443" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3826" FT /db_xref="InterPro:IPR005265" FT /db_xref="UniProtKB/TrEMBL:Q7WF37" FT /protein_id="CAE34806.1" FT /translation="MPEGRPGARGPRPSYPMLYSWIKIVHVAAMAAWTLGLLVLSSVTA FT FPARQGQGPGRFAQRLARCNRWLISPAMLLGVGCGLYLASMAGWFGQPWLDVKLALVGL FT LVVLHGAQSLVLRRQLASPAAGAPAWLAAGGAAVFFASAAIVLLAVVKPSL" FT misc_feature complement(join(207284..207352,207389..207442, FT 207470..207538,207599..207667)) FT /note="4 probable transmembrane helices predicted for FT BB4443 by TMHMM2.0 at aa 24-46, 67-89, 99-116 and 129-151" FT CDS complement(207736..208758) FT /transl_table=11 FT /locus_tag="BB4444" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3827" FT /db_xref="GOA:Q7WF36" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7WF36" FT /protein_id="CAE34807.1" FT /translation="MSRSHSFVSATRRALLGGALAVAAGLSWTAPAVAQGDAFPAKPLR FT FVVPYPPGGPLDSMARLLAEKVRESLGQPIIVENRSGAGGNIGADLVAKAAPDGYTLVM FT GAVATHAINPWLFANLPYDPVKDFAPVTIVASVPNVLVMNLEFAEKNNIQNLGDLLAYA FT KKNPGRLNYGSGGNGSAGHLSGELLKARAGIAAEHIPYQGAAPAQLALLSGQSDFMFDN FT LAAAAPLIKDGKVKALAVTTAKRSSLLADVPTVEEAGVKGFDLGTWFGVFTTGGTPADV FT VAKLNKAYADAMRLPDVRQRLLTMGSEAEPMTADAFAAFVKQEMAKYQEIVKISGASLN FT " FT misc_feature complement(207748..208584) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.9e-117" FT misc_feature complement(208657..208758) FT /note="Signal peptide predicted for BB4444 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.883 between residues 34 and 35" FT CDS complement(208879..209619) FT /transl_table=11 FT /locus_tag="BB4445" FT /product="putative amino acid ABC transporter ATP-binding FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3828" FT /db_xref="GOA:Q7WF35" FT /db_xref="HSSP:1B0U" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WF35" FT /protein_id="CAE34808.1" FT /translation="MTDAIIRMQDVNKWYGQFHVLRNINLDVAPGERIVVCGPSGSGKS FT TMIRCINRLEEHQQGHIIVDGTELTNDLKHIEAIRRDVGMVFQHFNLFPHLTVLENLTL FT GPTWVLKKSRAEAEATAMKYLERVRIPEQATKYPGQLSGGQQQRVAIARSLCMNPKIML FT FDEPTSALDPEMVKEVLDVMVRLAQESGMTMLCVTHEMGFARKVANRVIFMDRGEIIEQ FT NTPDEFFDNPQNERTKLFLSQILH" FT misc_feature complement(208969..209529) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 6.1e-67" FT misc_feature complement(209155..209199) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(209485..209508) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(209674..210774) FT /transl_table=11 FT /locus_tag="BB4446" FT /product="putative amino acid ABC transporter permease FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3829" FT /db_xref="GOA:Q7WF34" FT /db_xref="InterPro:IPR010065" FT /db_xref="UniProtKB/TrEMBL:Q7WF34" FT /protein_id="CAE34809.1" FT /translation="MSSATHTPGEALPPPSGHVGVWHWLRTRLFSSPLSILATVLLAWL FT VLMAVPALVEWALIGANFTATSAQECRQSEGACWAFIVEKHRLILFGTYPYDEQWRPLL FT ATIILIAVIVCSGMRRFWKPSLALVWIVGLSAVAVLMWGGVLGLTYVENARWGGLPLTL FT ILATFGIALAFPFGVLLALGRRSRMPAIKALCVVYIELIRGVPLISLLFMSSVMLPLFL FT PEGFSIDKLLRAQIAIIMFAAAYIAETVRGGLQAIPKGQYEGADSLGLTYWQQMRKVIL FT PQALKIVIPPLVSIFIALFKDTSLVVIIGIFDLTLAAKAALSDAAWRGFGVEAYVFIAL FT IYFVFCFSMSKYSQALEHRLATGHQR" FT misc_feature complement(join(209734..209802,209845..209913, FT 210013..210081,210124..210192,210226..210294, FT 210322..210390,210409..210477,210601..210669)) FT /note="8 probable transmembrane helices predicted for FT BB4446 by TMHMM2.0 at aa 36-58, 100-122, 129-151, 161-183, FT 195-217, 232-254, 288-310 and 325-347" FT misc_feature complement(209806..210018) FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 4.2e-17" FT misc_feature complement(209929..210015) FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS complement(210776..211966) FT /transl_table=11 FT /locus_tag="BB4447" FT /product="putative amino acid ABC transporter permease FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3830" FT /db_xref="GOA:Q7WF33" FT /db_xref="InterPro:IPR010065" FT /db_xref="UniProtKB/TrEMBL:Q7WF33" FT /protein_id="CAE34810.1" FT /translation="MTTTNRNAPIPAPRRRLNWNDPGLRAVVYQFVALVVVALVAWFLV FT SNTLHNLSVRNIATGFGFLDREAGFAIGETPIAYSPSDTYGRAILVGVLNTLRVAVIGI FT VLATLLGTLIGIGRLSKNWLVARLTSIYVEVMRNVPLLLQLFFWYALITENMPGPRQAH FT NPLPGVFISNRGVRVPSLEGNALDWMLGGLALAIVAIIVLGHWGRKRQEATGRIFPLGR FT AAIALLIGLPIVGWLASGASLALDMPALKGFNFQGGLNMSPEFAALLAGLVIYTSAFVA FT EVVRSGIQAVNQGQWEAAGSLGLRRAQVLRLVVLPQALRVIIPPMTSQYLNLTKNSSLA FT VAIGYPDIVSVVNTTLNQTGQAIEGILIIMGAYLTVSLTISIFMNWYNKRIALVER" FT misc_feature complement(join(210806..210874,211115..211174, FT 211232..211300,211346..211414,211511..211579, FT 211616..211684,211832..211900)) FT /note="7 probable transmembrane helices predicted for FT BB4447 by TMHMM2.0 at aa 23-45, 95-117, 130-152, 185-207, FT 223-245, 265-284 and 365-387" FT misc_feature complement(210896..211108) FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 1.2e-14" FT misc_feature complement(211019..211105) FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS complement(212086..213102) FT /transl_table=11 FT /locus_tag="BB4448" FT /product="putative ABC transporter periplasmic amino FT acid-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3831" FT /db_xref="GOA:Q7WF32" FT /db_xref="InterPro:IPR018313" FT /db_xref="UniProtKB/TrEMBL:Q7WF32" FT /protein_id="CAE34811.1" FT /translation="MKMLKLAAAGAALFAAGSVAHAGATFDNVKKKGFVQCGVSTGIPG FT FSIADSKGEWKGLDVDMCRAIAATMFGDASKFKVTPLNTQQRFTALQSGEVDVLTRNTT FT VTLTRDTTLGLIGVGVNYYDSQGVMVSKELGVKSAKELNGATVCVQPGTTTELNLADWF FT RGNKIEFKPVVIDKYDEIVRAFSAGRCDAFTTDKSQLASTRTTLEKPDNYVILPEDFSK FT EPLGPMVRQGDEQWFNVVRWSLNAMLEAEEYGITSKNVDEMAKSSNPNIQRILGVTPGM FT GKNLGVDDKWAFNIIKQVGNYGESFEATLGKSSAMKLERGLNASYKQGGLMYGWPVR" FT misc_feature complement(212314..213000) FT /note="HMMPfam hit to PF00497, DE Bacterial extracellular FT solute-binding proteins, family 3, score 5.2e-38" FT misc_feature complement(212893..212934) FT /note="PS01039 Bacterial extracellular solute-binding FT proteins, family 3 signature." FT misc_feature complement(213037..213102) FT /note="Signal peptide predicted for BB4448 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.971 between residues 22 and 23" FT CDS 213421..214092 FT /transl_table=11 FT /gene="ftsE" FT /locus_tag="BB4449" FT /product="cell division ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3832" FT /db_xref="GOA:Q7WF31" FT /db_xref="HSSP:1F3O" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WF31" FT /protein_id="CAE34812.1" FT /translation="MIEFQHVFKSYGRGRNILADINFRISAGEFVFVSGPSGAGKSTLL FT KLIGGLEPPSRGSIQVNNQRLDRLPSRARPYLRRAVGVILQDTHLLYDRSAFQNVMLPL FT AVTGQAPDSAAARARAALDKVGLAGKEDLNPIELSGGEQQRLAIARAIVNRPAILIADE FT PTANLDHDNAQRIMNVFRDFNRVGVTTLIASHDQDLMARYATRTLSIEHGRFHDTHGGQ FT A" FT misc_feature 213502..214059 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.1e-61" FT misc_feature 213523..213546 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 213832..213876 FT /note="PS00211 ABC transporters family signature." FT CDS 214089..214997 FT /transl_table=11 FT /locus_tag="BB4450" FT /product="putative permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3833" FT /db_xref="GOA:Q7WF30" FT /db_xref="InterPro:IPR003838" FT /db_xref="UniProtKB/TrEMBL:Q7WF30" FT /protein_id="CAE34813.1" FT /translation="MKAWLRQHRYALAITLRRLAAQPFSSLANLLVMALALALPLLGSA FT ILVSVQPLARQVSVTPELTVFMQTQAPATAAGAVAERIGRDYASQIAAVRVVPRDQALA FT ALRDNPAWEQALAVLPGNPLPDAVVVTLADGENLAGRAGALAQDWGKWDGVDQVQLDSA FT WVQRLEALLRFARIGLAFLAACVAVVVLATVFNTVRMQAMTQREEIAVARLVGATESFV FT RRPFLYQGALTGAVSALIAIGAAAMALTPLNDALLGLARSYGAEFALHLPGLPVLAVAV FT IAAGVLGALSARWSVTRSTRF" FT misc_feature 214089..214250 FT /note="Signal peptide predicted for BB4450 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.978) with cleavage site FT probability 0.202 between residues 54 and 55" FT misc_feature join(214164..214232,214608..214676,214764..214832, FT 214890..214958) FT /note="4 probable transmembrane helices predicted for FT BB4450 by TMHMM2.0 at aa 26-48, 174-196, 226-248 and FT 268-290" FT misc_feature 214599..214988 FT /note="HMMPfam hit to PF02687, DE Predicted permease, score FT 1.2e-12" FT CDS 215209..215889 FT /transl_table=11 FT /locus_tag="BB4451" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3834" FT /db_xref="GOA:Q7WF29" FT /db_xref="InterPro:IPR005659" FT /db_xref="UniProtKB/Swiss-Prot:Q7WF29" FT /protein_id="CAE34814.1" FT /translation="MPARLDARATRRYFDSAFNSPAVKILPNEYYVTNGEDVMLSTVLG FT SCVAACIHDPVIGVGGMNHFMLPEGDIHSPASATMRYGAFAMEVLINELLKAGAVRERL FT EAKVFGGGAVLSAMQLMNIGERNGQFVLNYLKTEGIPVRAQDLGDVHARRINYFPRDGR FT VMVRKMAPHHQKAEALIAQREAAAAQTVQAETRAAPRVERFARPGGMRVERFDTPSRRD FT PVGA" FT misc_feature 215404..215748 FT /note="HMMPfam hit to PF03975, DE CheD, score 4.3e-39" FT CDS complement(215980..219588) FT /transl_table=11 FT /locus_tag="BB4452" FT /product="putative pyruvate ferredoxin/flavodoxin FT oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3835" FT /db_xref="GOA:Q7WF28" FT /db_xref="InterPro:IPR019752" FT /db_xref="UniProtKB/TrEMBL:Q7WF28" FT /protein_id="CAE34815.1" FT /translation="MNAPLTPAQRAALESVHLDDKYTLTAGRAWMSGIHALVRLPMMQR FT VRDERAGLNTAGFVSGYRGSPLGGVDQNMWKAAKYLKQHHIEFQPGINEDLAATAVWGS FT QQVNLFPGAKYDGVFGMWYGKGPGVDRCGDVFKHANAAGTSRHGGVLVVAGDDHPAKSS FT TLPHQSDHILKACMIPALFPASVQEVLDYGLHGWAMSRYAGVWVGMKCITDIVEVSASV FT EVDPERTRIVLPEDFQLPPDGLNIRLPDTPLQQEARLLDYKLYAALAYARANRLNREMW FT QVPNAQARFGIMTSGKAYLDTRQALADLGLSEEICKRIGLRLFKVGMVWPLEATGMQRF FT AEDLDEILVVEEKRQVLEYQLKEELFSWIGTGKKIPRVVGKFDDKDGGEWSVPQGNWLL FT PAHYEFSPAMVAKAIGARLLRFELPEDVRAGIQARLDFIAEREQALARPRLVVDRKPWF FT CSGCPHNTSTRVPEGSRGMAGIGCHYMVTWMGRNTQVFTQMGGEGVPWVGQAPFTEEKH FT VFANLGDGTYYHSGLLAIRAAVAAKVPITYKILFNDAVAMTGGQPVDGPISVPMITRQM FT AAEGIEKIVVVTDEPEKYRHVTDLAPGVPVKHRDELDAVMKELRAYPDVSVLVYDQTCA FT TEKRRRRKRNAYPDPALRVVINERVCEGCGDCSEKSHCLSVEPLETEFGRKRTINQSSC FT NKDYSCLKGFCPSFVTVEGGRLRKPRALAQQDAIDQGLPAPRADALAGHYGVFIAGVGG FT TGVVTIGQLLGMAAHLEGKGCSVLDMAGLAQKGGAVYSHVVLAPTPGELLNTRVAMGEA FT DLVLAGDLVVGTSPEAIARMRPGRTHTLLNSDVAPTAAFVHDPDWTLPGSNLQADLAKA FT CGADNVATIDAAELAVGLLGDAIYANPLMMGYAYQKGWLPLGEAAMQRAIELNGQQVEN FT NLAAFAWGRRAAHDLAQVQALIGKGQPAAGDEGIVEVKRGQGAVVDFKRPAGELGALAR FT IRRAFLAQYQNEAYARRYQDLVDQVAAAEQAATGTTRLAEAVARYYFKLMAYKDEYEVA FT RLYSDGEFLKRIDAQFEGDWKLNFHLAPPLFSKRDSEGHLVKRRYGPATLRLFGALARL FT RFLRGTAFDVFGYTAERRAERALIEQYREQLGAILPKLNRGNLEHAVALASLPEEIRGY FT GHIKEAAMARADVRRAELMREFSASVVPIGGGVRAA" FT misc_feature complement(216769..217335) FT /note="HMMPfam hit to PF01558, DE Pyruvate FT ferredoxin/flavodoxin oxidoreductase, score 8.6e-06" FT CDS 219737..220813 FT /transl_table=11 FT /gene="mutY" FT /gene_synonym="micA" FT /locus_tag="BB4453" FT /product="putative A/G-specific adenine glycosylase" FT /EC_number="3.2.2.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3836" FT /db_xref="GOA:Q7WF27" FT /db_xref="HSSP:1KG2" FT /db_xref="InterPro:IPR000086" FT /db_xref="UniProtKB/TrEMBL:Q7WF27" FT /protein_id="CAE34816.1" FT /translation="MAPMDFASRITAWQARHGRHDLPWQNTRDPYRIWLSEIMLQQTQV FT ATVIPYYQRFLERFPDVAALAAARQEDVMPYWAGLGYYARARNLHRCAQEIMQRCGGRF FT PPRAEEIATLPGIGRSTAAAIAAFAYGERSPIMDGNVKRVFTRHFGIEGDPARRAVEQQ FT LWALAAAQVQAAPDLDMPGYTQGLMDLGATLCTRGKPACERCPVAQSCIARRDGRQAEL FT PTPKARKAIPERSTAMLVLHGPDGILLHLRPAPGIWGGLWSLPECDPAHDPGAAARELG FT LQAEAPVELAAFAHTFTHYRLHVRPWYLAVRGAALRQAATPERWVSPAELPATALPAPV FT RKLLDGLLAALPAPPRQA" FT misc_feature 219827..220312 FT /note="HMMPfam hit to PF00730, DE HhH-GPD superfamily base FT excision DNA repair protein, score 2.3e-47" FT misc_feature 220319..220369 FT /note="PS00764 Endonuclease III iron-sulfur binding region FT signature." FT misc_feature 220430..220786 FT /note="HMMPfam hit to PF00293, DE NUDIX domain, score FT 0.022" FT CDS complement(220824..221633) FT /transl_table=11 FT /locus_tag="BB4454" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3837" FT /db_xref="GOA:Q7WF26" FT /db_xref="InterPro:IPR000014" FT /db_xref="UniProtKB/TrEMBL:Q7WF26" FT /protein_id="CAE34817.1" FT /translation="MNSATHLAAHEGSARRRQALGEFVRTARARITPQMAGLPAGSRRR FT TPGLRREEVAQLSDISVTWYTWIEQGREVTVSPAVWARIANVLHLARAERAYLFELAEC FT ADPQQPRDEGGDAPVSLQACVDAIDAPAYALDRAWNLLASNAAMRELFDDWPLRDAQPN FT LLRYIFLDPAARELVVDWDQRARRVVAEFRADAGAHLDEADVVALLDELNRASPVFAHW FT WTRHAVVEREGGLREFQHPRSGRQNLQQITFRLATHPELKLVMLLPS" FT CDS 221723..222496 FT /transl_table=11 FT /locus_tag="BB4455" FT /product="ubiE/COQ5 methyltransferase family protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3838" FT /db_xref="GOA:Q7WF25" FT /db_xref="InterPro:IPR013216" FT /db_xref="UniProtKB/TrEMBL:Q7WF25" FT /protein_id="CAE34818.1" FT /translation="MSATPTHDAAVERQFSPRASAYLTSAVHAQGEDLLQMAAIAREHP FT GARLLDLGTGGGHVSFHVAPHVAEVVAYDLSQSMLDVVAGEAARRGLANLRTCRGKAEA FT LPFGDGEFDLVMSRYSTHHWEDPGQALREACRVLKPGGIAVFADVVSPGEALLDTWLQT FT IEVLRDTSHVRDYSAAEWLRMAAEAGLVTQGMTARRLPLEFTSWVERMRTPPELVTALR FT AMTDIAPAPVRRHFAIQPDGSFTSDTLTLVAVRPA" FT misc_feature 221729..222319 FT /note="HMMPfam hit to PF01209, DE ubiE/COQ5 FT methyltransferase family, score 3.7e-05" FT CDS complement(222618..226391) FT /transl_table=11 FT /gene="metH" FT /locus_tag="BB4456" FT /product="5-methyltetrahydrofolate--homocysteine FT methyltransferase" FT /EC_number="2.1.1.13" FT /note="ortholog of Bordetella pertussis (BX470248) BP3594" FT /db_xref="GOA:Q7WF24" FT /db_xref="HSSP:1BMT" FT /db_xref="InterPro:IPR003726" FT /db_xref="UniProtKB/TrEMBL:Q7WF24" FT /protein_id="CAE34819.1" FT /translation="MPYPRIPFPLSAYTHGGEFVRQLDKRILILDGAMGTMIQRYKLGE FT ADFRGERFAEHHKDLKGDNELLSLVRPDVISEIHRQYLEAGADVIETNTFGATSIAQGD FT YDLPELAYEMNLESARLARAACDAYSTPEHPRFVAGALGPQPKTASISPDVNDPGARNV FT TFDELRAAYVEQLNGLLDGGIDIVLIETIFDTLNAKAAIFAVEETFEARGVRLPVMISG FT TVTDASGRILSGQTVEAFWNSVRHARPVTIGLNCALGAALMRPYVAELSKICDTYVCVY FT PNAGLPNPMAETGFDETPADTSALLEEFAQAGLVNMAGGCCGTTPEHIRAIAGKVASLT FT PRAVPEVPVKTRLSGLEALNIDDETLFVNVGERTNVTGSKMFARLVREEKYDEALAVAR FT QQVENGAQIIDVNMDEAMLDSVACMHRFLNLIASEPDIARVPVMIDSSKWEVIETGLKC FT VQGKAVVNSISMKEGEEPFRHHARLCRRYGAAMVVMAFDEQGQADSLERRKEICGRAYR FT ILVEEEGFPPEDIIFDPNVFAVATGIDEHNHYAVDFIEGARWIRANLPHARISGGISNV FT SFSFRGNEPMREAIHTVFLYYAIEAGLTMGIVNAGQLGVYADLAPHLRDLVEDVILDRP FT EPVGRSDSADERSPTERLVQFAETVKGSGAKKEEDLTWRTGSVEQRLAHALVHGITTFI FT VEDTEEVRQQVAARGGRTIEVIEGPLMDGMNVVGDLFGAGKMFLPQVVKSARVMKQAVA FT HLIPFIEEEKRQIAAAGGDVRAKGKIVIATVKGDVHDIGKNIVSVVLQCNNFEVVNMGV FT MVPCAQILQKAKDENADMIGLSGLITPSLEEMAYVASEMQRDPYFRERAMPLMIGGATT FT SRVHTAVKIAPNYDGPVIYVPDASRSVGVATSLMSDQAPAYLAELAQEYEDVRRRHANR FT KAVPLVSLAEARAARPQIDWSGYQPPRPKFLGRRAFKSYDLAEIARYIDWGPFFQTWSL FT FGPFPAILDDKVVGEQARKVYEEGQAMLKRIIDGRWLTASGVVGFYPANRVNDEDIEVY FT ADETRSEVLFTYRNLRQQGVKREGVSNKCLADYIAPRDSGLLDYIGMFAVTAGLGIEKK FT EAEFQAALDDYSSIMLKSLADRLAEAFAECMHARVRRDLWGYAADEALSNDELIAEKYS FT GIRPAPGYPACPEHVVKTDLFRVLDAADVGMELTDSYAMFPASSVSGFYFSHPESQYFN FT VGNIGADQLADYVARSGRAEEDVRRTLAPNLG" FT misc_feature complement(222714..223580) FT /note="HMMPfam hit to PF02965, DE Vitamin B12 dependent FT methionine synthase, activation domain, score 4.7e-125" FT misc_feature complement(223695..224063) FT /note="HMMPfam hit to PF02310, DE B12 binding domain, score FT 4.1e-47" FT misc_feature complement(224097..224384) FT /note="HMMPfam hit to PF02607, DE B12 binding domain, score FT 1.9e-38" FT misc_feature complement(224547..225293) FT /note="HMMPfam hit to PF00809, DE Pterin binding enzyme, FT score 4.8e-84" FT misc_feature complement(225378..226313) FT /note="HMMPfam hit to PF02574, DE Homocysteine FT S-methyltransferase, score 5.9e-141" FT CDS 226728..228617 FT /transl_table=11 FT /locus_tag="BB4457" FT /product="putative outer membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3595" FT /db_xref="GOA:Q7WF23" FT /db_xref="HSSP:1UJW" FT /db_xref="InterPro:IPR012910" FT /db_xref="UniProtKB/TrEMBL:Q7WF23" FT /protein_id="CAE34820.1" FT /translation="MKSRSLRRCAGVLACAAPLAGHAQAGAAAGQPIPELDPVVVTAAR FT SPQLLRNVLADASVIERDTLARAGQSSLAEVLAQQHGIEFADSGGPQSVTSLFMRGANS FT NQTLVLLNGQRINNANGGGIALNALPPQAIERIEIVRGAASSLYGADAIGGVINIITRE FT PGDKALSAYANAGYGTYGTSRYDAGVSGAADGFSYSLSTGYGQSHGFNATNRRSFSYNP FT DKDSYYQNYATGTLGYEWRPEQKVVAQVYRSRINGGYDASASYDYNDRYIQDLQAYSLA FT SENRLTRYWKSTLRAGYVEDKNDSRAEGMFEDNNTRFRTRQMQYLWQNDFTLAAGQTLT FT LAYEHLDQRADGQMSTPTGIGNYTETRRHVNSYTGVYLGDFGRHHVQASLRNDDNSQFG FT SHTTGGLAYGFDLTPNLRATVAANTGFRAPSFNDLYTPTSAFGYRGNPDLKPEESRNAE FT IGLKYQDEDSELGVVYYQTRIKNLIQVTEDFSTVENVGRARLQGFTISGAHRFGNTRLR FT ASLDLSNPRNEDTGKQLLRRARTVLRAGIDHRFDRLLVGAEWYASDERYDYGFPEEKRL FT GGYGLVNLTAAYDLSRNMQVQVRWNNVLGQRYTLADGYNTAGSNAFVNLSWRM" FT misc_feature 226728..226802 FT /note="Signal peptide predicted for BB4457 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.489 between residues 25 and 26" FT CDS 228629..229522 FT /transl_table=11 FT /locus_tag="BB4458" FT /product="periplasmic binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3596" FT /db_xref="GOA:Q7WF22" FT /db_xref="InterPro:IPR002491" FT /db_xref="UniProtKB/TrEMBL:Q7WF22" FT /protein_id="CAE34821.1" FT /translation="MSAARLAPRLIALTVAALAAPGAAGAAPVRVVDDQRRTVELAQPA FT RRAIALAPHAAELVYAAGAGDRLVGAVRGTDYPPAARQLPSVGDAMQPDPERIAVLRPD FT LLIGWQPAAGAPLAPIAARLGAALYYSDPRTLADIPAAIEQLGRLFGTEAQADAGAAAL FT RARLAALAARYAGKAPVRVFVQAGTDPLFTLNDHSIVGDVLRLCGGVNVYGQAPILAPQ FT VTLEGVLAARPDAIVAGVDGTADAAATLRAWQAAGVPAALRGHVYGIDADSLYRPTGRL FT IDAAEQLCARLDEARG" FT misc_feature 228629..228706 FT /note="Signal peptide predicted for BB4458 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.937 between residues 26 and 27" FT misc_feature 228758..229447 FT /note="HMMPfam hit to PF01497, DE Periplasmic binding FT protein, score 1.6e-19" FT CDS 229548..230423 FT /transl_table=11 FT /gene="thiG" FT /locus_tag="BB4459" FT /product="thiazole biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3597" FT /db_xref="GOA:Q7WF21" FT /db_xref="InterPro:IPR008867" FT /db_xref="UniProtKB/Swiss-Prot:Q7WF21" FT /protein_id="CAE34822.1" FT /translation="MLYHWPYRRKHSCARAPARRAYRSIAMTTEDTLTIAGRSYQSRLL FT VGTGKYQDFAQTRAALDASGTQIVTVAIRRTNIGQNPDEPSLLDFVPPSQFTLLPNTAG FT CYSADDAVRTLRLARELLDGHDLVKLEVLGDPQNLFPNMPETLKATRTLVDEGFKVMVY FT CTDDPIQCRMLEDLGAVAVMPLASLIGSGMGILNPWNLRLIIDQSSVPVLVDAGVGTAS FT DAAIAMELGCDGVLMNTAIAGARDPILMASAMRKAVEGGREAYLAGRVPRKLYSAAPSS FT PTEGLIAAVK" FT CDS 230420..231271 FT /transl_table=11 FT /gene="thiD" FT /locus_tag="BB4460" FT /product="putative phosphomethylpyrimidine kinase" FT /EC_number="2.7.4.7" FT /note="ortholog of Bordetella pertussis (BX470248) BP3598" FT /db_xref="GOA:Q7WF20" FT /db_xref="HSSP:1JXH" FT /db_xref="InterPro:IPR004399" FT /db_xref="UniProtKB/TrEMBL:Q7WF20" FT /protein_id="CAE34823.1" FT /translation="MNHPASSATPRGERRIPNALSIAGVDPSGGAGVLADVKAMSALGA FT YGCAVIAAMTAQNTQGVTGISPVPAEFVGLQIDTLFADVPIDAVKLGMLGQEAVTLVVA FT EKLARWQPAHIVLDPVMVAKSGDLLLERRAVGALRETLLPLATLLTPNLPEAGVLLDER FT PVETLKEMRRVAERLRNRMTHAGQRWVMVKGGHLPGNETIDLLHDGDRMIELPGHRIET FT PNTHGTGCTLSAALAALLPQSPDVPEAARRAKAYLTEAIRQADRLQVGSGHGPVHHFHA FT WW" FT CDS 231333..232013 FT /transl_table=11 FT /locus_tag="BB4461" FT /product="putative protein-L-isoaspartate FT O-methyltransferase" FT /EC_number="2.1.1.77" FT /note="ortholog of Bordetella pertussis (BX470248) BP3599" FT /db_xref="GOA:Q7WF19" FT /db_xref="InterPro:IPR000682" FT /db_xref="UniProtKB/TrEMBL:Q7WF19" FT /protein_id="CAE34824.1" FT /translation="MNASTLPDVEQARFNMVEQQIRPWDVLDPKVLDALFAVRRELFVP FT PALRALAFSDLEIPLEINAVNTRQNMLAPKIEARLAQELLLQPTDCVLEIGTGSGYQAA FT LLAHLAQQVTTVEIDSRLATFAQQNLQVNNVADVKVETGDGRNGWGSTEYDAILVTGSV FT PVVPDALKYQLRVGGRLVVIVGQAPIMTAYRITRTTAASFETVSLFETVIKPLRGTTVS FT QFKF" FT misc_feature 231366..231995 FT /note="HMMPfam hit to PF01135, DE FT Protein-L-isoaspartate(D-aspartate) O-methyltransferase FT (PCMT), score 6e-14" FT CDS 232017..233336 FT /transl_table=11 FT /locus_tag="BB4462" FT /product="putative outer membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3600" FT /db_xref="GOA:Q7WF18" FT /db_xref="HSSP:1EK9" FT /db_xref="InterPro:IPR010130" FT /db_xref="UniProtKB/TrEMBL:Q7WF18" FT /protein_id="CAE34825.1" FT /translation="MRIGRVAALLTLACAANASAQDLMQAWRAGLSNDPQFAAARAAYR FT AGQEKLPQARAGLLPALSGEAGGLYNESRTTHGLGVSHSGGRGTWDLVLTQPLFDWSRW FT QRFEQSKLVVADVEVQLQQAFQDLMLRVANAYFGILTAQDALAATEAEKAAVAEQLAAA FT KRTFELGNATITDTYEAQARYDLVVAEELRQQNDLQTQRDALSRIMGEAPGALAELPPG FT IPLPAPQPARLNDWSTQAEASGLDVLRAQLQTRIASHEIQIARSGHMPTLNLRASSGSA FT TDGVLQGTGPGRPIENTVGVTLSIPLYAGGGISSQVTEKVQLEQKARHDFEDARRQAVQ FT SARLYYNGVLTGLARVRALEAGEKSSRAAVQANQTGYELGVRINLDVLNAQQQLYATQR FT DLAQARYGALLDSLRLKAVSGILSEADLDAVNRLLRLPRN" FT misc_feature 232017..232076 FT /note="Signal peptide predicted for BB4462 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.974 between residues 20 and 21" FT misc_feature 232083..232679 FT /note="HMMPfam hit to PF02321, DE Outer membrane efflux FT protein, score 5e-34" FT misc_feature 232713..233309 FT /note="HMMPfam hit to PF02321, DE Outer membrane efflux FT protein, score 1.5e-37" FT misc_feature 232734..232757 FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site." FT CDS complement(233357..233845) FT /transl_table=11 FT /locus_tag="BB4463" FT /product="putative cytidylyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3602" FT /db_xref="GOA:Q7WF17" FT /db_xref="HSSP:1COZ" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/TrEMBL:Q7WF17" FT /protein_id="CAE34826.1" FT /translation="MSSARFESKILSRAELVAAVAAGRLPRPLVFTNGVFDILHRGHVT FT YLDQAAQLGATLVVAVNTDESVRRLGKGSDRPLNQVQDRAALLAALGCVDAVTSFHEDT FT PQELIGELRPDLIVKGGDYDMDTLPETALVKSWGGRAVAIPFDFERSTTALLGKIRQG" FT misc_feature complement(233372..233767) FT /note="HMMPfam hit to PF01467, DE Cytidylyltransferase, FT score 4.5e-29" FT CDS complement(234043..234921) FT /transl_table=11 FT /locus_tag="BB4464" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0165" FT /db_xref="GOA:Q7WF16" FT /db_xref="UniProtKB/TrEMBL:Q7WF16" FT /protein_id="CAE34827.1" FT /translation="MLYPELFKTMEAVRWNMASDIPWDDFDGSKLSDEQAHTIKMNAIT FT EWAALPATEMFLRDNRGDSDFCAFMSVWFFEEQKHSLVLIEYLRRFRPELMPTEEELHK FT VRFEFDPAPELETLMLHFCGEIRLNHWYRCAADWHTEPVIKAIYRTVAKDEARHAGAYL FT QYMRRALHDRGDQTSLQARQSFAKIGVLMASASRTAQAMHPTNLHVNKALFPNDTVQSR FT LPEPGWLEHWLDTQIRFDGTWEGKVATRILHILSKLLDRQFDSVKDLNRYRKEQTGRVL FT APQEGLVLAGA" FT CDS complement(235096..236658) FT /transl_table=11 FT /gene="ubiB" FT /gene_synonym="aarF" FT /locus_tag="BB4465" FT /product="probable ubiquinone biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0164" FT /db_xref="GOA:Q7WF15" FT /db_xref="InterPro:IPR010232" FT /db_xref="UniProtKB/TrEMBL:Q7WF15" FT /protein_id="CAE34828.1" FT /translation="MNAMLTFLRLLRILLVSLRYGLDELVLSSLNHPLATCLLRVMRLG FT TRPRAPRGVRLRMALESLGPIFVKFGQVLSTRRDLIPADIANELALLQDRVPPFPSAQA FT AASIEAALGAPPAQLFAQFDVDPVASASIAQVHFAVLHDGREVAVKVLRPGMLNVIEKD FT LALLRVVAGVIERLGADGRRLKPREVVAEFDKYLHDELDLVREASNCSQLRRNFGPESG FT RGEMLIVPEVVWEYTASTVFTMQRMYGIPVGQVDRLRAAGIDIPTLARSGVEIFFTQVF FT TDGFFHADMHPGNIYVSDAPQTLGRYIALDFGIVGSLSEFDKNYLAQNFLAFFHRDYRR FT VAQLHIESGWVPPETREEELEGAVRAVCEPYFDRPLAEISLGQVLLRLFQTSRRFNVEI FT QPQLVLLQKTLLNVEGLGRQLDPNLDLWKTAKPYLEHWMRQRIGLTGLRQSLAKEAGQW FT SQMLPSLPRLVHEHFSRPNLTPHLLAEMNRLRRAQEQGNRLTAALTAVLAVAVAVALWA FT LNR" FT misc_feature complement(235105..235164) FT /note="1 probable transmembrane helix predicted for BB4465 FT by TMHMM2.0 at aa 499-518" FT misc_feature complement(235960..236331) FT /note="HMMPfam hit to PF03109, DE ABC1 family, score FT 1.5e-46" FT CDS complement(236655..237290) FT /transl_table=11 FT /locus_tag="BB4466" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0163" FT /db_xref="UniProtKB/TrEMBL:Q7WF14" FT /protein_id="CAE34829.1" FT /translation="MLPFAALPTLPRIAARALNALLERESWARDRLARHAGKTVRFALG FT GLALSLTIDSEGRVQEADSAVVPNVTLSAAESFSLARLLPGDGRADFADLTHISGDAAL FT AQVVADLARDLRWDAEDELARVVGDIPAARLLGGVRALAGGAREAGGRLARNVSEYLAE FT ESAVLVGRPQWEQWRLDLARFGADSDALARSAAALEARLARLDARRGA" FT CDS complement(237519..238541) FT /transl_table=11 FT /locus_tag="BB4467" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0162" FT /db_xref="GOA:Q7WF13" FT /db_xref="InterPro:IPR007379" FT /db_xref="UniProtKB/TrEMBL:Q7WF13" FT /protein_id="CAE34830.1" FT /translation="MSRSRFSRFCAMALVAVAGTAMVGASFDAEARRMGGGSSFGRQST FT NITQQRQAVTPPAAGAGTTAGATSAARPATAAAGTAAAGTAAKSGMSRWLGPIAGIAAG FT LGLAALLSHLGLSGAFAEFMASMLLIALVVFAVIFIVRRLRGGAPRQAMQSAYGAAGGN FT RPGQPSQQPMWRESLNPAPAQQPAAAPVAAAAPAAAAAALPKAGDDGNWFIPGDFDTPR FT FLQQAKDQFVRIQGIWDSGEVESLRDFLTDDLISELKPQLEARGAAANKTEVVLLNAEL FT LGIETVSDGHLASVRFSGMLREAPGTEAFRFEEVWNLFKPADGGWLLAGIQQIPVEHAS FT " FT misc_feature complement(join(238116..238184,238194..238262, FT 238461..238529)) FT /note="3 probable transmembrane helices predicted for FT BB4467 by TMHMM2.0 at aa 5-27, 94-116 and 120-142" FT misc_feature complement(238473..238541) FT /note="Signal peptide predicted for BB4467 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.602 between residues 23 and 24" FT CDS complement(238707..239483) FT /transl_table=11 FT /gene="ubiE" FT /locus_tag="BB4468" FT /product="ubiquinone/menaquinone biosynthesis FT methyltransferase" FT /EC_number="2.1.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0161" FT /db_xref="GOA:Q7WF12" FT /db_xref="InterPro:IPR004033" FT /db_xref="UniProtKB/Swiss-Prot:Q7WF12" FT /protein_id="CAE34831.1" FT /translation="MQTPHSQPESAPQGEQSTHFGFQSVPEADKARKVAEVFHSVASRY FT DVMNDLMSAGLHRVWKAFTIGRAAVRPGMKVLDIAGGTGDLARAFAKRAGPSGEVWLTD FT INESMLRVGRDRLTDSGLLVPTAVCDAERLPFPSQYFDRVSVAFGLRNMTHKDRALAEM FT TRVLKPGGKLLVLEFSRVAKPLAPAYDWYSFNVLPWMGKKVANDEASYRYLAESIRMHP FT DQETLAGMLRDAGLDRVQYFNLTAGVAALHEGVRLG" FT misc_feature complement(238716..239417) FT /note="HMMPfam hit to PF01209, DE ubiE/COQ5 FT methyltransferase family, score 3.4e-110" FT misc_feature complement(238947..238991) FT /note="PS01184 ubiE/COQ5 methyltransferase family signature FT 2." FT misc_feature complement(239304..239351) FT /note="PS01183 ubiE/COQ5 methyltransferase family signature FT 1." FT CDS 239650..240348 FT /transl_table=11 FT /gene="phoB" FT /locus_tag="BB4469" FT /product="phosphate regulon transcriptional regulatory FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0160" FT /db_xref="GOA:Q7WF11" FT /db_xref="HSSP:1GXP" FT /db_xref="InterPro:IPR011879" FT /db_xref="UniProtKB/TrEMBL:Q7WF11" FT /protein_id="CAE34832.1" FT /translation="MSSTILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAQTLIRAE FT LPDLILLDWMLPGASGLSLARKLRDEERTRAVPVIMLTAKGAEQDKVDGLEAGADDYIT FT KPFSPKELMARIKAVLRRRAPQLTDDIIDVAGLKLDPVTHRLSGHSQSLSIGPTEFRLL FT HFFMTHPERVFSRSQLLDQVWGDHVFVEERTVDVHIRRLRKALEPSGHDAHVETVRGSG FT YRFTAQVPAR" FT misc_feature 239656..240021 FT /note="HMMPfam hit to PF00072, DE Response regulator FT receiver domain, score 5.6e-38" FT misc_feature 240100..240315 FT /note="HMMPfam hit to PF00486, DE Transcriptional FT regulatory protein, C terminal, score 8.6e-31" FT CDS 240360..241670 FT /transl_table=11 FT /gene="phoR" FT /gene_synonym="nmpB" FT /locus_tag="BB4470" FT /product="phosphate regulon sensor protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0159" FT /db_xref="GOA:Q7WF10" FT /db_xref="InterPro:IPR000014" FT /db_xref="UniProtKB/TrEMBL:Q7WF10" FT /protein_id="CAE34833.1" FT /translation="MIWLRTLFMIAFWAVMALLAQWLIGNPAGWLLFGAAMAAMLLWRS FT WRLHLVSRWAHDPESAPPAAVGPWDDILAPLYRYTRARARELAETRETMQSMLAAAQAL FT PDGVVTLNEDFQIDWANRMARRHLGLRLPADRGHNLLNLLRAPEFVAYAHRGHWPEPIL FT VRLSLNGQERVMMIHLAGYASNQRLLISRDVTQIERLETTRRDFVANVSHELRTPLTVL FT AGFLETLRELPAEALPAEQRDQYMAMMHEQARRMQAIVEDLLTLSTLESSPEADPLAVD FT VGALLRTARQQVEALSNGRHVFEWQIEEGLDVLGSGTELASALSNLLTNAVRYTPDGGR FT ITVRWRRGADGEALYSVQDTGIGIPARHLPRLTERFYRVDRGRSRAAGGTGLGLAITKH FT IAMRHDADLLIDSEPGKGSTFTLRFPAERVTGEDPDR" FT misc_feature 240360..240473 FT /note="Signal peptide predicted for BB4470 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.996) with cleavage site FT probability 0.641 between residues 38 and 39" FT misc_feature 240393..240461 FT /note="1 probable transmembrane helix predicted for BB4470 FT by TMHMM2.0 at aa 12-34" FT misc_feature 240966..241175 FT /note="HMMPfam hit to PF00512, DE His Kinase A FT (phosphoacceptor) domain, score 4.3e-23" FT misc_feature 241302..241640 FT /note="HMMPfam hit to PF02518, DE Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 3.1e-38" FT CDS 241726..242403 FT /transl_table=11 FT /locus_tag="BB4471" FT /product="two-component response regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0158" FT /db_xref="GOA:Q7WF09" FT /db_xref="HSSP:1KGS" FT /db_xref="InterPro:IPR006291" FT /db_xref="UniProtKB/TrEMBL:Q7WF09" FT /protein_id="CAE34834.1" FT /translation="MRILVIEDEPKLADYLHKGLSEQSHIVDVARDGVNGRHLALEGDY FT ELVILDVMLPDIDGFAVLAALRAAARNTPVLMLTARDRVEDRVRGLEGGADDYLVKPFA FT FSELLARVHALQRRGRSQESTLLRLADLELDLASRKAQRGGRRLDLTAKEFSLLALLLR FT RQGQILSRTTLAEQVWDMNFDSDTNVIDVAIRRLRGKLDDPYDAKLLHTVRGMGYVLES FT RPS" FT misc_feature 241726..242085 FT /note="HMMPfam hit to PF00072, DE Response regulator FT receiver domain, score 1.4e-33" FT misc_feature 242161..242376 FT /note="HMMPfam hit to PF00486, DE Transcriptional FT regulatory protein, C terminal, score 5.8e-30" FT CDS 242400..243797 FT /transl_table=11 FT /locus_tag="BB4472" FT /product="two-component sensor kinase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0157" FT /db_xref="GOA:Q7WF08" FT /db_xref="InterPro:IPR003660" FT /db_xref="UniProtKB/TrEMBL:Q7WF08" FT /protein_id="CAE34835.1" FT /translation="MRLRTPSMQRRLTLWLGVIALLASSLAGALLFWTLKQEVQRQEIT FT EARGKAELIEHLVGMQSHTPQALSDMLDGIQAGHGHLGIWITSPDGTLRYGNATPEVLS FT VTDGGEVLLRNADDTRMRGVRLTLPGPPEAGATLTVAVNTLANARFLYAYGTALLLICA FT LWIGATVVLAAWAVRRTLAPVRRLSGQAASIQPEHLDVRLPVVGIDRELSDLVASFNRT FT LDRLQEAYQQMEGFNADVAHELRTPLATLINGAQVTLSSPRSAEELREALASNLEELED FT LKTLVNDMLFLARADRGEQAADLAPARLEQEALRVAEYFEATLEAQALHVAVQGSATCA FT ANPGLVRRALANLLANAIRATPRGATITVRCAALPDGAARLTVHNPGPPIPAADLPRIF FT DRFFRSGGARPPRGEGHGLGLAIVRAIARMHNGGVTAASGPAGTEIGFSLGARPAQDDK FT RVIRATD" FT misc_feature 242400..242486 FT /note="Signal peptide predicted for BB4472 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.685 between residues 29 and 30" FT misc_feature join(242433..242501,242862..242930) FT /note="2 probable transmembrane helices predicted for FT BB4472 by TMHMM2.0 at aa 12-34 and 155-177" FT misc_feature 242874..243083 FT /note="HMMPfam hit to PF00672, DE HAMP domain, score FT 3.7e-09" FT misc_feature 243093..243293 FT /note="HMMPfam hit to PF00512, DE His Kinase A FT (phosphoacceptor) domain, score 7.3e-18" FT misc_feature 243420..243755 FT /note="HMMPfam hit to PF02518, DE Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 1.3e-32" FT CDS 243903..244364 FT /transl_table=11 FT /locus_tag="BB4473" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0156" FT /db_xref="InterPro:IPR007332" FT /db_xref="UniProtKB/TrEMBL:Q7WF07" FT /protein_id="CAE34836.1" FT /translation="MSHVSTLRRALLGALLLAPAAALANTPIPIDVWRTPTCGCCEDWL FT QHLRSNGFEVRAHMVEDTAPVRSQAGMPARYGSCHTARVQGYTVEGHVPAADIRRLLRD FT KPRAVGLTAPGMPIGSPGMDGPAYGGRRDAYDVLLVQPDGSARVFQAYR" FT misc_feature 243903..243974 FT /note="Signal peptide predicted for BB4473 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 24 and 25" FT CDS 244445..245665 FT /transl_table=11 FT /gene="serA" FT /locus_tag="BB4474" FT /product="D-3-phosphoglycerate dehydrogenase" FT /EC_number="1.1.1.95" FT /note="ortholog of Bordetella pertussis (BX470248) BP0155" FT /db_xref="GOA:Q7WF06" FT /db_xref="HSSP:1HKU" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7WF06" FT /protein_id="CAE34837.1" FT /translation="MLYRQPNMAQIVLFENIHPSARAVFSAAGYTDIVAHAAALPSGEL FT REALRGAEVVGIRSRTHLDADLLAANPDLRVVGCFCIGTNQVDLDAAMMRGVPVFNAPF FT SNTRSVAELVLGEAILLLRRIPEKNARVHLGHWDKSAAGAYEARGKTLGIVGYGNIGSQ FT ISTLAEAIGMRVVFFDVEAKLPLGNARAAGSLAELLEQADVVTLHVPGGKSTQNIVNAD FT TLARMKRGAILINASRGTVVDIQALHDALASGHLAGAALDVFPTEPKSADEPLASPLIG FT MPNVLLTPHIGGSTQESQENIGREVAEKLVRFLQAGTTKSAVNFPELSYQAPVGGSRII FT HVHRNAPGALGALDNLMAQHGLNIVSQSLQTKGQIGYAVTDVDGEVSDTVLADLRSHPV FT TVRCEKL" FT misc_feature 244475..244756 FT /note="HMMPfam hit to PF00389, DE D-isomer specific FT 2-hydroxyacid dehydrogenase, catalytic domain, score FT 1.3e-28" FT misc_feature 244760..245314 FT /note="HMMPfam hit to PF02826, DE D-isomer specific FT 2-hydroxyacid dehydrogenase, NAD binding domain, score FT 3.3e-83" FT misc_feature 244874..244897 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 244898..244981 FT /note="PS00065 D-isomer specific 2-hydroxyacid FT dehydrogenases NAD-binding signature." FT misc_feature 245036..245104 FT /note="PS00670 D-isomer specific 2-hydroxyacid FT dehydrogenases signature 2." FT misc_feature 245123..245173 FT /note="PS00671 D-isomer specific 2-hydroxyacid FT dehydrogenases signature 3." FT misc_feature 245453..245659 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01842, DE ACT domain, score 5e-07" FT CDS complement(245754..246629) FT /transl_table=11 FT /gene="brg1" FT /locus_tag="BB4475" FT /product="LysR family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0154" FT /db_xref="GOA:Q7WF05" FT /db_xref="HSSP:1IXC" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WF05" FT /protein_id="CAE34838.1" FT /translation="MIREFKTFIAVARGGTFTGAGRRLGLTQSAVSAQIKRLEEHLGVA FT LFERTGKSAALNHHGRSLLPQAEALVAMADRVVGMAGAGRVSGLLRVGAIASVQQDLLV FT RALAALRAEHPDVRVRIVPGVSLTLLGHVDAGEVDLAVLIRPPFALPPELEWQPLLREP FT MVLAVPEAAPEAPWRELLAGQPFIRYDRASFGGRLVDMFLKRHRLDVREAIELDEIDAI FT ANLVRHGLGVALLPHTRHLDARGLRLLELDDQVRFAREIGLIVRQPLGQSPLAQRLAQC FT LRAAVSFGEA" FT misc_feature complement(245769..246383) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 1.3e-42" FT misc_feature complement(246447..246626) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1e-21" FT misc_feature complement(246492..246584) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 246731..247162 FT /transl_table=11 FT /locus_tag="BB4476" FT /product="probable dioxygenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0153" FT /db_xref="GOA:Q7WF04" FT /db_xref="InterPro:IPR004360" FT /db_xref="UniProtKB/TrEMBL:Q7WF04" FT /protein_id="CAE34839.1" FT /translation="MSTPSPIPPFHLAFPVRDLAEARDFYGALLGCPEGRSSPEWIDFN FT FYGHQIVAHLAPQACGSAATNAVDAHNVPVRHFGAVLSMDQWEALAGKLTDAGTEFVIE FT PYIRFKGEVGEQATMFFLDPSGNALEFKAFKNIESLFAK" FT CDS 247181..247915 FT /transl_table=11 FT /locus_tag="BB4477" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0152" FT /db_xref="InterPro:IPR003833" FT /db_xref="UniProtKB/TrEMBL:Q7WF03" FT /protein_id="CAE34840.1" FT /translation="MPLTVSPPPPSSAPAGWRILPQGDRCLIVWFGDRIDAGVGRACLA FT AAGLLRAAGLAGVTDVVPSFAAVAVHYRPGPDGAPGYAMLAAQVERLLAGGIPVDDSAG FT REMEIPVCYGGEHGPDLEEAARAAGLTPEALVALHGAPGSMVYMLGFAPGHSYIGVHDA FT RLDLPRRATPRTAVPAGSVAIANRQTVIYPARLPGGWNIIGATPLNLFDPGREPAALLQ FT PGDRIRFVPIDAAEFDRLREAQ" FT misc_feature 247229..247843 FT /note="HMMPfam hit to PF02682, DE Uncharacterized ACR, FT COG2049, score 1.1e-53" FT CDS 247912..248925 FT /transl_table=11 FT /locus_tag="BB4478" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0151" FT /db_xref="InterPro:IPR003778" FT /db_xref="UniProtKB/TrEMBL:Q7WF02" FT /protein_id="CAE34841.1" FT /translation="MSLAVIKPGMLSTFQDGGRHGYQHQGIPVAGAMDPRAHRLANLLA FT GNAADTATLEITVAGPTLRFEAPACVALGGADLGATLGGLPAPVLRPLVARAGDVLSFA FT RPGQGARAYLAVHGGYDLPMVMGSQSTYLRSAFGGYHGRALAKGDQVGLRRPLADDAAR FT LDALAQQLWQLRFYLAATLSSPPRDVLRILPGPHWEAFDAASRQALLDQAFRIGAQSDR FT MGYRLEGPRLRLSERREMLSEATCFGTVQVPADGAPIVLMADRQTTGGYPKLAQVATVD FT LPSLAQAMPGQALRFALIELEQAQRLDAAREAAFAQLTGQLDALRGLLRNFQEPTP" FT misc_feature 247981..248853 FT /note="HMMPfam hit to PF02626, DE Uncharacterized ACR, FT COG1984, score 1.6e-100" FT CDS 248922..249680 FT /transl_table=11 FT /locus_tag="BB4479" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0150" FT /db_xref="InterPro:IPR005501" FT /db_xref="UniProtKB/Swiss-Prot:Q7WF01" FT /protein_id="CAE34842.1" FT /translation="MNPAIDLNCDMGESYGAWRMGNDEAVLQFVTSANIACGFHGGDPS FT TMRQTVAAALAHGVALGAHPSLPDLAGFGRRAMQITPQEAYDLVVYQVGALAGVAASQG FT ARLHHVKAHGALYNMAAKDAALARAICQAVRDVDSDLVLYGLAGSALIDAARAIGLRAA FT QEVFADRTYQADGQLTPRSQPDAMITDLDQAIAQVLGMVRDGSVRTPDGQTVALQADTL FT CIHGDQPDALVFARGIRLALERNGIAIQAA" FT misc_feature 248931..249656 FT /note="HMMPfam hit to PF03746, DE LamB/YcsF family, score FT 4.2e-172" FT CDS complement(249691..250473) FT /transl_table=11 FT /locus_tag="BB4480" FT /product="probable transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0149" FT /db_xref="GOA:Q7WF00" FT /db_xref="InterPro:IPR005471" FT /db_xref="UniProtKB/TrEMBL:Q7WF00" FT /protein_id="CAE34843.1" FT /translation="MSAPKASRPARDRQFASTLAHGLQLLRCFTPEAAVLSNRQLSELS FT GLSKPTVSRYTYTLIELGYLKVDPVSGKFQLGNAVLTLSYPLLANIALRQVVRSPMREL FT AERLGCSVSLCMRERLSMVYVETSRSRSLRAQRYSDIGMSHPIIATSNGRAYLAACSAD FT ERNTLFNQIRVKTPEHWERWGESALDMIQFWGRHGFCYSHGEYRPDVATVGVPYRPSSG FT GELYVFNCVLGSQFVKPGQLENEVGPALLEMTSVLPYA" FT misc_feature complement(249697..250254) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01614, DE Bacterial transcriptional FT regulator, score 7.5e-09" FT CDS 250640..251563 FT /transl_table=11 FT /locus_tag="BB4481" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0148" FT /db_xref="GOA:Q7WEZ9" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7WEZ9" FT /protein_id="CAE34844.1" FT /translation="MAASSAHADTFPSRPIRLIVPFGPGGITDLIARQAALGMAEKLGQ FT PVIIENKPSAGHIVAMQTVAQATPDGYTILLGSNTGFTVAPHMYKNLPFRIDTLQPIAP FT INTAPTVLLARPDFPANNLTELIQYIKDNPGKLNYGSFGIGTSAHLGMEIMKSDLGLNI FT MHIPYRGDAQGLLALKAKEVDIAYITLFSAQARIRAGEFKALGVLQNDRLTAFPDIQTT FT VEVGSKNSGMPVWIAFFAPPGTPDAVMRKLESATRSASSAPAFVEFLHNNGVEPWNPSN FT QDLMRFIQDQLNRSGPIIQEIGLQPQ" FT misc_feature 250730..251551 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 7.9e-163" FT CDS 251626..252846 FT /transl_table=11 FT /locus_tag="BB4482" FT /product="putative hydroxylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0146" FT /db_xref="GOA:Q7WEZ8" FT /db_xref="InterPro:IPR003042" FT /db_xref="UniProtKB/TrEMBL:Q7WEZ8" FT /protein_id="CAE34845.1" FT /translation="MRVIIAGCGIGGAALAVALEKFKIDHVVLEQAPRLEEVGAGVQLS FT PNGVAVLQHLGVHEALSKVAFEPRDLLYRDWQSGQVLMRNPLMPTIKEHFGAPYYHAHR FT ADLLGVLTERLDPAKLRLGSRIVDIEQDARQVTATLADGTRIQGDILVGADGIHSLVRS FT RFFQADQPQASGCIAWRGIVDADAARHLDISPSAHLWLGPERSAVIYYVSGGRKINWIC FT IGSRPGDRKESWSATTTVDEVLREYAGWNEQVTGLIRLTDKPFVTALYDRAPLDSWING FT RIALLGDSAHAMLPYHAQGAVQSMEDAWVLARTLQQSGGDIPPALERYQSLRKDRTARV FT QAQSQLAEKRFHMSDPEQVARRNQKFLHYDAQYRGTFLPQQEWLFGYDADKAALGTDDA FT WRALRAW" FT misc_feature 251626..251679 FT /note="Signal peptide predicted for BB4482 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.926) with cleavage site FT probability 0.464 between residues 18 and 19" FT misc_feature 252064..252660 FT /note="HMMPfam hit to PF01360, DE Monooxygenase, score FT 9e-56" FT CDS 252867..253679 FT /transl_table=11 FT /locus_tag="BB4483" FT /product="putative enoyl-CoA hydratase/isomerase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0145" FT /db_xref="GOA:Q7WEZ7" FT /db_xref="HSSP:1DUB" FT /db_xref="InterPro:IPR001753" FT /db_xref="UniProtKB/TrEMBL:Q7WEZ7" FT /protein_id="CAE34846.1" FT /translation="MNKSDSFELIEYQAADGIARIAHNRPQARNAESQGLLEELDRALG FT LAVRDASVKAIVISGKGDHFSAGHDLKEAAAKRSNFTVEQRWEFEERYYLGYAMHIYDC FT PKPTIAQVSGACIAGGFMVANMCDLIVASDDAFFSDPVCQTLATAAVEVMIHPWVMGAR FT KAKEFLFLGERMSAQEALAIGMVNKVVARAELQAETERMAQRIAACDPFALRLVKRSIN FT RGLEMQGLRSAIDAHFDTHQLSHLSEGFNRARAQGLGNAIQAAAAGSR" FT misc_feature 252921..253439 FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 1.4e-33" FT CDS 253685..254620 FT /transl_table=11 FT /locus_tag="BB4484" FT /product="putative lipase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0144" FT /db_xref="GOA:Q7WEZ6" FT /db_xref="InterPro:IPR013094" FT /db_xref="UniProtKB/TrEMBL:Q7WEZ6" FT /protein_id="CAE34847.1" FT /translation="MASAQLATLSAQVRQLYAGWDQNTDIARIRRDWDAFFGAVRLPAR FT VTPVDAGGVPCHWIEAPASTRDRVVVFIHGGGYQIGSHRSHHNLMARLSACSGRAVLSI FT GYRLAPQARCPAALEDVDAAHAWLAGQGWAARQTALAGDSAGGALAVLLLARLRARGAA FT LPAACAVMSPWIDLQARGESYTANAASDPIANRATVLRMARAYLGRDGDPEAPAVSAQH FT ADLRGLPPLLVQAGSAEALLDDARALAARAAASGVAVRLSVWQDMPHVFQLFAARLDAA FT DAAIAELADFINHPLRAARTGAEPHHETST" FT misc_feature 253892..253942 FT /note="PS01173 Lipolytic enzymes 'G-D-X-G' family, putative FT histidine active site." FT CDS 254634..255827 FT /transl_table=11 FT /locus_tag="BB4485" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0143" FT /db_xref="GOA:Q7WEZ5" FT /db_xref="HSSP:1PQY" FT /db_xref="InterPro:IPR003673" FT /db_xref="UniProtKB/TrEMBL:Q7WEZ5" FT /protein_id="CAE34848.1" FT /translation="MDLTRVLAGPWATQILADMGARVIKIERPGAGDDLRGWGPPFLKN FT AHGEETTDAAYFLSANRGKESVTLDISSAEGQEIVRQLAKDADVLVENYKVGTLARFGL FT DYESLRKINPRLVYCSVTGFGQTGPHAHLPGYDYIFQGMGGLMSITGLPDAEPGGGPLK FT TGIPITDVVTGIYASTAILGALEHRNLSGEGQAIDISLLDCLVNVTGCAVMNYFLSGKI FT PQRLGNTHSNMVPYQVFRCKEGDVIVAVGNDTQFVTFAGLIGMPQLATDSRFSTMAQRS FT RNRETLIPIIAQAMQARTMQEWVSLLEAANVPCGPINNLQQVFEDAQVQHRGLKLSLPH FT GSGVDAPGVASPIRYSATPIAYGRAAPCLGEHTDDVLQSELGMAPAAIGALRARGIV" FT misc_feature 254832..255413 FT /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score FT 4.8e-82" FT CDS complement(255915..256700) FT /transl_table=11 FT /locus_tag="BB4486" FT /product="GntR family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0142" FT /db_xref="GOA:Q7WEZ4" FT /db_xref="InterPro:IPR011711" FT /db_xref="UniProtKB/TrEMBL:Q7WEZ4" FT /protein_id="CAE34849.1" FT /translation="MRYLCFNVYLVFSYICKLRRPAAKEFILDVKAPATIPYFLKEQIR FT ELIVDGTFRPGQPLREQDLEQRFGTSRSPIREALRLLERGGLVVHLQRKGFRIRRYSQT FT EIRQVYMLYAELEAYSIMQLSEAADLSPLLDDLRRHEARIAQAQADADVRGYIGALRDF FT YLASARFTGNVPLADTLSRLYEQVEPLRYNLVRRTLAATPADQYHRGIVPALAQRDLAG FT AARQAHVLVREMLPRILSAYEQWAGDAGDEPGDDRLRVA" FT misc_feature complement(256407..256583) FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 1.1e-11" FT misc_feature complement(256455..256529) FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT CDS complement(256753..260715) FT /transl_table=11 FT /locus_tag="BB4487" FT /product="probable iron-sulfur binding oxidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0141" FT /db_xref="GOA:Q7WEZ3" FT /db_xref="InterPro:IPR006094" FT /db_xref="UniProtKB/TrEMBL:Q7WEZ3" FT /protein_id="CAE34850.1" FT /translation="MNAPLASQILTAAIPPAPGARLREIPYNYTSFSDREIVSRLLGED FT AWQLVSDLRGERRTGRSARMLYEVLGDIWVVRRNPYLQDDLLDNPKRRKLLIEALHHRL FT GEIDKRREPAAVTEAGHDPRRDAKVVELLARARSAVAAFEGQFDQTAQLRRQAQRVLGR FT ITARDNIKFDGLSRVSHVTDATDWRVEYPFVVLTPDSEDEIAALVRACIELGLTIVPRG FT GGTGYTGGAIPLTWKSAVINTEKFEALGEVESCVLPGMTEPAAVIRAGAGVVTKRVAEA FT AERAGFVFAVDPTSAEASCVGGNIAMNAGGKKAVLWGTALDNLAWWRMVDPDGNWLEVT FT RLAHNLGKIHDVDVASFELKWFDGAGKPGEKLLRTERLDIEGRKFRKAGLGKDVTDKFL FT AGLPGVQKEGCDGLITSARWVLHRMPRHTRTVCMEFFGQARDAIPSIVEVKGYLDGEGK FT ARGAILAGLEHLDERYLRAVGYATKSKRGMLPKMVLIGDIVGDDEDAVATAASEVVRLA FT NTRHGEGFVAVSAEARKKFWLDRSRTAAIARHTNAFKINEDVVIPLDRMGEYTDHIERI FT NIELSTRNKLRLLDELDAYLAEPLPMGKVEDAEDVALTRAEVLAERTRQAIEHLARTRR FT RWQWLLDNLDLPLAQALPELDGLDMAAQREALAGRVQAQPQARVFDVVQDHTVRISWKT FT EVLPALQGVFSGNAGKLILEGLVAVHARVLKSRVFVALHMHAGDGNVHTNIPVNSDDYG FT MLREANQAVERIMQIARDLDGVISGEHGIGLTKYEFLTEAELAPFQEYKRRVDPNGHFN FT AGKLMPGADLRHAWTPSFNLMGHESLIMQQSDIGAIADSVKDCLRCGKCKPVCSTHVPR FT ANLLYSPRNKILATSLLVEAFLYEEQTRRGISLKHWEEFEDVADHCTVCHKCYTPCPVD FT IDFGDVSMNMRALLRRMGRKSFNPGTAAAMFFLNAKDPAAINATRKAMVGVGYKVQRAA FT HDLLASVSRKQAAHPPATVGRAPLREQVVHFVNRKMPGGLPKQTARKLLDIEDANYVPI FT IRDPKTTTADTEAVFYFPGCGSERLFSQVGLATQAMLWHAGVQTVLPPGYLCCGYPQRG FT NGMTDKAEQIITDNRVLFHRVSNTLNYLDIKTVVVSCGTCYDQLAGYEFEKIFPGCRLI FT DIHEYLLEKGIKLDGVQGVRYMYHDPCHTPMKLQDPMKTVRSLVGEGAQKSDRCCGESG FT TLAVSRPDVSTQVRFRKQEELDQGQAAMRADGFSGDVKVLTSCPSCLQGLSRYEGETGM FT DADYIVVEMARHILGETWMEDYVRRANTGGIERVLV" FT misc_feature complement(257932..257967) FT /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding FT region signature." FT misc_feature complement(257950..257967) FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature complement(258103..258174) FT /note="HMMPfam hit to PF00037, DE 4Fe-4S binding domain, FT score 0.091" FT misc_feature complement(258268..258984) FT /note="HMMPfam hit to PF02913, DE FAD linked oxidases, FT C-terminal domain, score 3.5e-05" FT misc_feature complement(259504..260142) FT /note="HMMPfam hit to PF01565, DE FAD binding domain, score FT 3.9e-34" FT CDS complement(260839..261375) FT /transl_table=11 FT /locus_tag="BB4488" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0140" FT /db_xref="UniProtKB/TrEMBL:Q7WEZ2" FT /protein_id="CAE34851.1" FT /translation="MEQSLLDAVHWLLAVLALPKVGLSAVFLVSLLSATLLPLGSEAAV FT YGFVKLAPDMFWPTVLVATVGNTAGGAISYYMGLWAHRAVERWRARHPHERQDGFQSRL FT GGRWNARARIWLHRMGPPALLLSWLPAVGDPLCAVAGWLRLSFWPCVAYMAIGKFLRYA FT LLTGALLWALPELHM" FT misc_feature complement(join(260857..260925,260938..261006, FT 261145..261213,261271..261339)) FT /note="4 probable transmembrane helices predicted for FT BB4488 by TMHMM2.0 at aa 13-35, 55-77, 124-146 and 151-173" FT CDS 261462..262970 FT /transl_table=11 FT /gene="ilvA" FT /locus_tag="BB4489" FT /product="threonine dehydratase biosynthetic" FT /EC_number="4.3.1.19" FT /note="ortholog of Bordetella pertussis (BX470248) BP0139" FT /db_xref="GOA:Q7WEZ1" FT /db_xref="InterPro:IPR000634" FT /db_xref="UniProtKB/TrEMBL:Q7WEZ1" FT /protein_id="CAE34852.1" FT /translation="MSTDYLKRILTSKVYDVAVESPLERAPLLSQRIANNVLLKREDTQ FT AVFSFKLRGAYNKMANLTPAARSRGVIAASAGNHAQGVALAATRLGCRAVIVMPTTSPQ FT VKVDAVRRLGGEVVLAGDSFTDAYEHAQQLEKREKLTFVHPFDDPDVIAGQGTIGMEIL FT RQHPGEIEAIFVAIGGGGLIAGVAAYIKQLRPEIKIIGVQTEDSDAMVRSVRAGRRVQL FT SDVGLFSDGTAVKLVGAETFRLARQYVDDFVVVNTDAICAAIKDVFQDTRSVLEPAGAM FT AVAGAKQYAAEHKLKGKTLVAVACGANMNFDRLRFVAERAEVGEMREAVFAVTMPEQRG FT SFRRFCELVGNRSVTEFNYRISDAERAHVFVGVQVSTPAEPEKIAANFRRHGFDTLDLT FT HDELAKTHLRHMVGGHSALARNELLYRFEFPERPGALMRFLNAMNPDWNISLFHYRNQG FT ADYGNILIGIQVPPTDKKLFKTFVAELGYPHWNETDNPAYRLFL" FT misc_feature 261501..262382 FT /note="HMMPfam hit to PF00291, DE Pyridoxal-phosphate FT dependent enzyme, score 1.5e-99" FT misc_feature 261585..261626 FT /note="PS00165 Serine/threonine dehydratases FT pyridoxal-phosphate attachment site." FT misc_feature 262089..262136 FT /note="PS00063 Aldo/keto reductase family putative active FT site signature." FT misc_feature 262416..262685 FT /note="HMMPfam hit to PF00585, DE C-terminal regulatory FT domain of Threonine dehydratase, score 1.1e-39" FT misc_feature 262698..262964 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00585, DE C-terminal regulatory FT domain of Threonine dehydratase, score 1.8e-34" FT CDS complement(263095..264201) FT /transl_table=11 FT /locus_tag="BB4490" FT /product="outer membrane porin" FT /note="ortholog of Bordetella pertussis (BX470248) FT BP0267+BP0138" FT /db_xref="GOA:Q7WEZ0" FT /db_xref="HSSP:1E54" FT /db_xref="InterPro:IPR002299" FT /db_xref="UniProtKB/TrEMBL:Q7WEZ0" FT /protein_id="CAE34853.1" FT /translation="MKKTLLAVALATGFAGAAQAADSVTLYGLIDAGLGYEQVKFKGQS FT QSRIGTVQGVSSGSRFGLRGSEDLGDGLRAVFNLEAGFGPLNGNSLQSGRLFGRQATVG FT LDSDAWGRLEFGRQTNLASKFFGSIDPFSVSYNSANMGTTFSAANTMRLDNMVLYQTPS FT LEGFKFGVGYSFSADDTLDDDSNFATAGNNRVLTTGLQYLNGPVNLALTYDRFNPNDDR FT AGGKSDARVQQYAIGGTYDFEVVKLAAAFGQTRDGWFVGQNMGTTPDGFNKLSSFMLAD FT GFRANSYMIGATVPLGRSSVFGSWQRATPSNDKLTGDDATFNVYSLGYTYDFTKRTNLY FT AYASYGKNYAFQRDAKDTAVAMGIRHRF" FT misc_feature complement(263101..264096) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00267, DE Gram-negative porin, FT score 1.6e-05" FT misc_feature complement(264142..264201) FT /note="Signal peptide predicted for BB4490 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 20 and 21" FT CDS complement(264411..264794) FT /transl_table=11 FT /locus_tag="BB4491" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0266" FT /db_xref="UniProtKB/TrEMBL:Q7WEY9" FT /protein_id="CAE34854.1" FT /translation="MKRHALATALMVSVTLAGMSAAHADGKTREQVRAELAAAKAAGQV FT TFGELDYPPAAAPAAGKSRADVAAELQEAKAAGQVTFGELDYPAPAAAPAAGKTREQVR FT AELAAAKAAGEVTFGELDYPPAK" FT misc_feature complement(264498..264521) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(264606..264629) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(264711..264734) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(264723..264794) FT /note="Signal peptide predicted for BB4491 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.989 between residues 24 and 25" FT CDS 265038..265928 FT /transl_table=11 FT /locus_tag="BB4492" FT /product="probable LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0265" FT /db_xref="GOA:Q7WEY8" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WEY8" FT /protein_id="CAE34855.1" FT /translation="MDIQLNDIALFVEVAKRKNFSHAAEALNIPTSTLSRRVSELERGL FT GMRLLNRSTRRIDLTEAGALYFERCRHIVEEARVAHEQLQDMAAQPKGRLRISLPTSLA FT QLFLTDVIPEFRSLYPDIECDFDLSMRPVDPISNPFDLVLRFGQQPDSSLVARQIVLMT FT QHLYAAPQYLALHGEPRVPADLGHHECLRPSMSDAFSYWVLQSGDKVERVQVSGRLAAN FT NIGMLGRLASQGLGITPLVMSDSMTRAIRQAGLVRVLPDWALTPIPLFALMPSRMVPAK FT TRAFLDFIQPRLNAS" FT misc_feature 265050..265229 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 6.1e-20" FT misc_feature 265092..265184 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 265299..265919 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 2.5e-38" FT CDS complement(265941..266516) FT /transl_table=11 FT /gene="apt" FT /locus_tag="BB4493" FT /product="adenine phosphoribosyltransferase" FT /EC_number="2.4.2.7" FT /note="ortholog of Bordetella pertussis (BX470248) BP0264" FT /db_xref="GOA:Q7WEY7" FT /db_xref="InterPro:IPR000836" FT /db_xref="UniProtKB/Swiss-Prot:Q7WEY7" FT /protein_id="CAE34856.1" FT /translation="MLLFPGTFTMQTDYAELVRRTIRSVPDWPTPGVTFRDITPVLQDP FT RTFRVLIDLFVYRYMRQRLDLVAGVDARGFIVGAVLAHELNLGFVPVRKKGKLPYRTVA FT EEYSLEYGNAAVEMHTDSVRTGQRVLLVDDLIATGGTMLAAIKLLQRLGANVVEAAAII FT DLPYLGGSAQITATGTPLYTVCQYQEGD" FT misc_feature complement(265953..266420) FT /note="HMMPfam hit to PF00156, DE Phosphoribosyl FT transferase domain, score 1.4e-43" FT misc_feature complement(266094..266132) FT /note="PS00103 Purine/pyrimidine phosphoribosyl FT transferases signature." FT CDS complement(266552..268252) FT /transl_table=11 FT /locus_tag="BB4494" FT /product="probable ATP-binding component of ABC FT transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP0263" FT /db_xref="GOA:Q7WEY6" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WEY6" FT /protein_id="CAE34857.1" FT /translation="MSLWRLLFRLYARRKGALALALALSLLTVAAGVGLLGVSGWFLTG FT AALAGAGAVFNLFVPSSLVRGLSFIRIASRYGERLAGHAATLRLLADLRASVFRSLVRL FT TPRQLARYRGGDLVARLTSDVDALDTVFLFVLAPVAVALAGGAILTAVMGAWIPAAALV FT VAAALLLCCAVAPWWLARAGRRPGAAVQESAAALRAATLDAVEGHADIAALHAGAQARA FT QFADACEQSARARAAQVRIAARGQWLAQLAAGAAVLAVLWFGLDGLAAGELGGPLLAGL FT LLATIGIFEVAGPVMRGVSRLGAAVAAAARIGEIAARIGEIAAREPDLRDPAAPRALPP FT AGELALEDVTFAYPVPDAAAHPVLDGASLRVAPGQRVAIVGASGAGKSTVLQLLLRLED FT PQRGAVRYAGCDVRECAQAELHRRVALLSQDAPLFLGTVRTNLLIGDAQAGDAALWRAL FT DAARLGEVVRGLPHGLDTWIGETGAGLSAGQARRLCLARALLTGASAILLDEPTAGLDA FT ATEAELLADLARATQGRTVVLATHARLPPGTVDTVYTLQAGRLHRAAPM" FT misc_feature complement(266579..267133) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 5.4e-46" FT misc_feature complement(266756..266800) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(267089..267112) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(join(267368..267436,267464..267532, FT 267716..267784,267794..267862,268046..268114, FT 268127..268195)) FT /note="6 probable transmembrane helices predicted for FT BB4494 by TMHMM2.0 at aa 20-42, 47-69, 131-153, 157-179, FT 241-263 and 273-295" FT misc_feature complement(267368..268201) FT /note="HMMPfam hit to PF00664, DE ABC transporter FT transmembrane region, score 9.7e-08" FT misc_feature complement(268106..268252) FT /note="Signal peptide predicted for BB4494 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.716 between residues 49 and 50" FT CDS complement(268249..270000) FT /transl_table=11 FT /locus_tag="BB4495" FT /product="probable ATP-binding component of ABC FT transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP0262" FT /db_xref="GOA:Q7WEY5" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WEY5" FT /protein_id="CAE34858.1" FT /translation="MSGASGIEHDPAAALNKPPREHSRWLAMRARAARAPLAVAGAAPL FT IGGVLLVIQAWLLARVLDQAIVQGAARAELATSIVAIAALMLARAALAWLGERAGAAAA FT ERIKRQVREALFARLLALGPQWSRQRASGELASAMVEQVEALDAFFAKYLPAMGAAAVL FT PVAFAVVVLPVDVIAGLLLLVTAPLIPLFMALVGWGAEAASRRHLQAFARLSGFFADRL FT RGLATLKLYGRAEAEAQSVVAASDALRQRTMAVLRIAFLSSAVLEFFAALGVAGVAVYI FT GLTYLGFLDVRASVLTLQGGFFCLLLAPEVYGPLRQFAAHYHDRAAARAAVAQIARTFD FT GLPSPGVEPAPPAPAPALARGAARLAASGLTVTQPGRRAPVLREAALQLDAGAHVALRG FT ASGAGKTTLLELLARLRDGAGAIALDGVPLADWDEAALRERVVLIGQRPYLYAGSIADN FT IRLARPGASAALVEEAARRACVMEFAQALPRGLDTPLGSRGHGLSGGQAQRVALARLFL FT RDPGLILLDEPAAHLDAATQARVLDEVLAFAQGRTLLLATHADAVARRLPRQWMLEQGR FT LRELQPA" FT misc_feature complement(268276..268827) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 4.7e-47" FT misc_feature complement(268453..268497) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(268783..268806) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(269083..269892) FT /note="HMMPfam hit to PF00664, DE ABC transporter FT transmembrane region, score 7.8e-20" FT misc_feature complement(join(269158..269226,269407..269475, FT 269488..269556,269713..269781,269824..269892)) FT /note="5 probable transmembrane helices predicted for FT BB4495 by TMHMM2.0 at aa 37-59, 74-96, 149-171, 176-198 and FT 259-281" FT CDS complement(269997..270122) FT /transl_table=11 FT /locus_tag="BB4496" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0261" FT /db_xref="InterPro:IPR012994" FT /db_xref="UniProtKB/TrEMBL:Q7WEY4" FT /protein_id="CAE34859.1" FT /translation="MWFFSWILGLSLACAFGILNAMWFELREGHAHDPYKKPADE" FT misc_feature complement(270051..270119) FT /note="1 probable transmembrane helix predicted for BB4496 FT by TMHMM2.0 at aa 2-24" FT misc_feature complement(270060..270122) FT /note="Signal peptide predicted for BB4496 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.971) with cleavage site FT probability 0.827 between residues 21 and 22" FT misc_feature complement(270081..270113) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(270136..271290) FT /transl_table=11 FT /gene="cydB" FT /gene_synonym="cyd-2" FT /locus_tag="BB4497" FT /product="cytochrome D ubiquinol oxidase subunit II" FT /EC_number="1.10.3.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0260" FT /db_xref="GOA:Q7WEY3" FT /db_xref="InterPro:IPR003317" FT /db_xref="UniProtKB/TrEMBL:Q7WEY3" FT /protein_id="CAE34860.1" FT /translation="MDSLIPFDYATLRVLWWLLLGALLIGFAVMDGFDLGVAALLPLVA FT KTDVERRVVLNVVGPVWEGNQVWLITAGGAIFAAWPLLYAASFSGFYLAMMLVLIALIL FT RPVGFKYRSKMEGTRWRSRWDAVLCFCGVVAALVFGVAMGNIILGVPFGFDAATLRPEY FT EGHFYQLFKPFALLAGLVSVAMMVMHGGVLLAWRTHDPVSSRARNWGRLAALVTAALFV FT AGGFWVAYGLDGHVITSAVDMHAPSNPMLKTVELQAGGWMANYEKWPLTWIAPALGVGG FT ALLAFVLLSARANVLAFLASSVSIAGIILTVGFALFPFIMPSSSRPGAGLTVWDGSSSL FT LTLWIMLLAVAFFLPIITVYTAWVYRVMRGKVTEDSVDGTPNSY" FT misc_feature complement(270172..271263) FT /note="HMMPfam hit to PF02322, DE Cytochrome oxidase FT subunit II, score 3.3e-148" FT misc_feature complement(join(270205..270273,270331..270399, FT 270418..270486,270598..270666,270703..270771, FT 270847..270915,270976..271044,271201..271254)) FT /note="8 probable transmembrane helices predicted for FT BB4497 by TMHMM2.0 at aa 13-30, 83-105, 126-148, 174-196, FT 209-231, 269-291, 298-320 and 340-362" FT CDS complement(271306..272925) FT /transl_table=11 FT /gene="cydA" FT /gene_synonym="cyd-1" FT /locus_tag="BB4498" FT /product="cytochrome D ubiquinol oxidase subunit I" FT /EC_number="1.10.3.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0259" FT /db_xref="GOA:Q7WEY2" FT /db_xref="InterPro:IPR002585" FT /db_xref="UniProtKB/TrEMBL:Q7WEY2" FT /protein_id="CAE34861.1" FT /translation="MSAVRAGLPSGSVSMIDLDVVNLSRFQFAATALYHFLFVPLTLGL FT SFILAIMESVYVMTGRQIWKRMTMFWGTLFGINFALGVATGVVMEFQFGMNWSYYSHYV FT GDIFGAPLALEGLMAFFLEATFVGLFFFGWNRLSKVGHLVVTWLVAFGTNFSALWILIA FT NGWMQNPVGAMFNPDTMRMEMTDFAAVLLNPVAQAKFVHTVSAGYVAGAMFVMSISAWY FT LLKGRHIDLAKRSMAVAASFGLASALSVVVLGDESGYLTTEHQKMKIAAIEAMWHTEPA FT PASFNLIAIPNQEERRNEFAISIPYVMGLIGTRSLTTPLLGIDDLVRRAEVRIREGITA FT YEALQRVRANPKDVDARMLFERTWPDLGYALLVKRYQPDLSKATDEQIAQAALDTVPNV FT APLFWAFRVMVAVGFYLILFFGVAFWLASRGRLDSRPGLLKVALWSLPLPWVAIESGWF FT VAEYGRQPWVIEGVLPTYYAASGLTITDLAISLAIFLVLYTVLLVIGVKVMLHAVKAGP FT KGEASEPAGRRADPVQAAVDAY" FT misc_feature complement(271354..272859) FT /note="HMMPfam hit to PF01654, DE Bacterial Cytochrome FT Ubiquinol Oxidase, score 1.2e-255" FT misc_feature complement(join(271408..271476,271546..271614, FT 271651..271719,272164..272217,272254..272322, FT 272437..272505,272524..272592,272650..272718, FT 272776..272844)) FT /note="9 probable transmembrane helices predicted for FT BB4498 by TMHMM2.0 at aa 28-50, 70-92, 112-134, 141-163, FT 202-224, 237-254, 403-425, 438-460 and 484-506" FT misc_feature complement(271648..271695) FT /note="PS00225 Crystallins beta and gamma 'Greek key' motif FT signature." FT CDS complement(273009..273554) FT /transl_table=11 FT /locus_tag="BB4499" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0258" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WEY1" FT /protein_id="CAE34862.1" FT /translation="MALSPQTERFVLHFGEMGSRWGVNRTVGQIYALLFLSPKALHADD FT IAEALGFSRSNVSMGLKELQSWRLVKLMHQVGDRRDYFETPKDVWEIFRILMEEKRKRE FT IDPTLTLLRDTLLERPADEAQAYAQQRMHEMLELIELSTGWFDEVQRLPPETLQNLMKL FT GSKVQKVLGFAGKLRGKD" FT CDS complement(273697..274917) FT /transl_table=11 FT /gene="purT" FT /locus_tag="BB4500" FT /product="phosphoribosylglycinamide formyltransferase 2" FT /EC_number="2.1.2.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0702" FT /db_xref="GOA:Q7WEY0" FT /db_xref="HSSP:1KJI" FT /db_xref="InterPro:IPR005862" FT /db_xref="UniProtKB/Swiss-Prot:Q7WEY0" FT /protein_id="CAE34863.1" FT /translation="MSTFPAPVLGTPLSPTATRVMLLGAGELGKEVVIALQRLGVEVIA FT VDRYADAPGHQVAHRAHVVSMTDPQALRQVIEQERPHVVVPEIEAIATDLLVALEDEGA FT VRVTPTARAAHLTMNREGIRRLAAETLGLPTSPYRFVDTEQALREAIDGGIGYPCVIKP FT VMSSSGKGQSIIRSADDIAAAWRYAQEGGRVGAGRVIVEGFIEFDYEITLLTVRARGAD FT GQIVTQFCEPIGHRQVDGDYVESWQPHPMSPAALQRSREIALAVTGDLGGLGIFGVELF FT VAGDQVWFSEVSPRPHDTGMVTLISQVQNEFELHARALLGLPVDTRLRQPGASSVIYGG FT VEARGVAFEGVAQALAEPGTDIRLFGKPESFAKRRMGVGLAVADDVDQARAKAARVSQA FT VRVRAGA" FT misc_feature complement(274270..274782) FT /note="HMMPfam hit to PF02222, DE ATP-grasp domain, score FT 6.4e-38" FT CDS 275023..276012 FT /transl_table=11 FT /locus_tag="BB4501" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0701" FT /db_xref="GOA:Q7WEX9" FT /db_xref="InterPro:IPR000644" FT /db_xref="UniProtKB/TrEMBL:Q7WEX9" FT /protein_id="CAE34864.1" FT /translation="MSAHPDPTPEAILASARRTLQTEAQAIADLAARLDDSFVQVVGML FT LACRGRVVVSGIGKTGHIARKLAATLASTGTPAFFVHAAEAIHGDLGMVTRDDVLIAIS FT YSGTGQELLTILPVVRRMGAGLIAITGNAESELARLADVHLDASVSQEACPLNLAPTAS FT TTAALALGDALAVACLEARGFGREDFARSHPGGALGRRLLTHVRDVMRHGPALPIVAED FT APLPRALEEISAKGMGMTAVVDAQRKPVGIFTDGDLRRLIERVGDIRSLTVADGMTRAP FT RTIGPDALAAEAAQQMDDRRLNQMLVVDTAGVLIGALHTHDLMAAKVV" FT misc_feature 275149..275553 FT /note="HMMPfam hit to PF01380, DE SIS domain, score 2e-33" FT misc_feature 275650..275811 FT /note="HMMPfam hit to PF00571, DE CBS domain, score FT 4.4e-07" FT misc_feature 275845..276006 FT |