EBI Dbfetch

ID   BX640448; SV 1; linear; genomic DNA; STD; PRO; 347137 BP.
XX
AC   BX640448;
XX
DT   09-AUG-2003 (Rel. 76, Created)
DT   29-JUL-2008 (Rel. 96, Last updated, Version 5)
XX
DE   Bordetella bronchiseptica strain RB50, complete genome; segment 12/16
XX
KW   complete genome.
XX
OS   Bordetella bronchiseptica
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Alcaligenaceae; Bordetella.
XX
RN   [2]
RP   1-347137
RA   Sebaihia M.;
RT   ;
RL   Submitted (06-AUG-2003) to the EMBL/GenBank/DDBJ databases.
RL   Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute,
RL   Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail:
RL   ms5@sanger.ac.uk
XX
RN   [3]
RA   Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E.,
RA   Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L.,
RA   Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A.,
RA   Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I.,
RA   Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T.,
RA   Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S.,
RA   Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E.,
RA   Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M.,
RA   Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S.,
RA   Barrell B.G., Maskell D.J.;
RT   "Comparative analysis of the genome sequences of Bordetella pertussis,
RT   Bordetella parapertussis and Bordetella bronchiseptica";
RL   Nat. Genet. 35(1):0-0(2003).
XX
DR   EMBL-CON; BX470250.
DR   RFAM; RF01070; sucA.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..347137
FT                   /organism="Bordetella bronchiseptica"
FT                   /strain="RB50"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:518"
FT   CDS             complement(59..385)
FT                   /transl_table=11
FT                   /locus_tag="BB3603"
FT                   /product="putative iron uptake protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1141"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDH5"
FT                   /protein_id="CAE35576.1"
FT                   /translation="MLNATAFCLAYAGFAALSLGMDRHYEDVFDRALPRRRRLALRSLG
FT                   WLGLALSLWASAGAWGWNYGTVEWIGILSLAGLLLIWLLTFWPRAALGAGGACALAAPV
FT                   LALL"
FT   misc_feature    complement(join(125..193,203..271))
FT                   /note="2 probable transmembrane helices predicted for
FT                   BB3603 by TMHMM2.0 at aa 39-61 and 65-87"
FT   misc_feature    complement(326..385)
FT                   /note="Signal peptide predicted for BB3603 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.865) with cleavage site
FT                   probability 0.479 between residues 20 and 21"
FT   CDS             complement(390..2024)
FT                   /transl_table=11
FT                   /locus_tag="BB3604"
FT                   /product="putative iron uptake protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1140"
FT                   /db_xref="InterPro:IPR005625"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDH4"
FT                   /protein_id="CAE35577.1"
FT                   /translation="MKPARTKAAGEEGLRQSMSWLHTWSGLIFGWVLFAMFLTGTLAFF
FT                   RPEITRWMQPEIDVAPVSAEQASAVAQRYLQAHAPDARRWFVTLPTQRAPAIQLSYPAA
FT                   KPKPGERGFTRVSLDPATGDALHARQTRGGDFFYRFHFELEMAFPWGRWLASIAGMFML
FT                   VAIISGIITHKKIFTDFFTFRPRKGGQRAWMDGHNVLSVLGLPFHLMITFSGLVIFMYM
FT                   LMPAGVLAAYDNERAFFDEMFPAFTQTALQANPAPLAPLAGLAARARAEWDGGRPGRIV
FT                   VNNPGDASATVSVTRSTSERIAYGRMAPTITFDGVTGQLRSQDAKESAVAATAGTIVGL
FT                   HLGLFAEPVLRWLYFLVSLAGTAMVGTGLALWIAKRRQKAAGRESFALRLVDALNAGSI
FT                   AGLCVAVAAFFWANRLLPAALPQHAQWEVRIFFGAWLLCGLYAAVARRRKWRDLLALAA
FT                   FMAAALPVLNLWTTQRHLGVSLPAGDWVMAGFDLTALACAALLGWMAWRAARKAAAAAV
FT                   PPRARPAPASRRVPARDAAAAAIGETR"
FT   misc_feature    complement(join(507..566,609..668,693..746,789..848,
FT                   909..977,990..1043,1329..1397,1509..1577,1890..1958))
FT                   /note="9 probable transmembrane helices predicted for
FT                   BB3604 by TMHMM2.0 at aa 23-45, 150-172, 210-232, 328-345,
FT                   350-372, 393-412, 427-444, 453-472 and 487-506"
FT   misc_feature    complement(894..1985)
FT                   /note="HMMPfam hit to PF03929, DE Uncharacterized
FT                   iron-regulated membrane protein (DUF337), score 2.2e-23"
FT   CDS             complement(2021..2329)
FT                   /transl_table=11
FT                   /locus_tag="BB3605"
FT                   /product="putative iron uptake protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1139"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDH3"
FT                   /protein_id="CAE35578.1"
FT                   /translation="MKAPAAGAHMLHYRFAVTSRALAAILGGYALSSAAAACLAVWLPM
FT                   RRVDAVVAALMLSFVVYTCAVLWVFATRNAWRAWAGVLLPALALLMLYWLGKAAGGA"
FT   misc_feature    complement(join(2042..2101,2120..2188,2201..2269))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BB3605 by TMHMM2.0 at aa 21-43, 48-70 and 77-96"
FT   misc_feature    complement(2216..2248)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    complement(2219..2329)
FT                   /note="Signal peptide predicted for BB3605 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.891) with cleavage site
FT                   probability 0.480 between residues 37 and 38"
FT   CDS             2575..3576
FT                   /transl_table=11
FT                   /locus_tag="BB3606"
FT                   /product="shufflon-specific DNA recombinase"
FT                   /note="Similar to Escherichia coli shufflon-specific DNA
FT                   recombinase rcI SWALL:RCI1_ECOLI (SWALL:P10487) (384 aa)
FT                   fasta scores: E(): 8.4e-10, 37.03% id in 324 aa, and to
FT                   Xanthomonas axonopodis shufflon-specific recombinase rci or
FT                   xac2418 SWALL:AAM37269 (EMBL:AE011879) (315 aa) fasta
FT                   scores: E(): 2.1e-51, 48.88% id in 313 aa"
FT                   /db_xref="GOA:Q7WDH2"
FT                   /db_xref="InterPro:IPR002104"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDH2"
FT                   /protein_id="CAE35579.1"
FT                   /translation="MKPSLRRIRQTVPTLNQALNRYLTEVSALKKGHTAEKSISKAWLA
FT                   TRLALRPVNRIRNTDLIEVRDAWLASKAPATVGRRLAFLSHVFTVIRKDWGLDWLANPV
FT                   QLVRRPTVDDARDRRLFDGIRLRGVSEAECPREELEWILRSTRSTELPTIARLAAETGM
FT                   RRSEICGIRRELVDLVHGVVRLLDTKNGTSRDVPLTPLAKELLRRFLVGRPLRGPVFTM
FT                   RPGSVTRAFIRARLRAKRRYQGLCQLYGRRPNPAYFTDLRFHDLRHEATSRLADVFAMH
FT                   ELAKVSGHKDTRMLLRYYHPHGWELARKLAKSPLGRRQQELLRDDRMERLAA"
FT   misc_feature    2575..38716
FT                   /note="Prophage"
FT   misc_feature    2974..3498
FT                   /note="HMMPfam hit to PF00589, DE Phage integrase family,
FT                   score 7.7e-18"
FT   CDS             complement(3579..4370)
FT                   /transl_table=11
FT                   /locus_tag="BB3607"
FT                   /product="modification methylase"
FT                   /EC_number="2.1.1.72"
FT                   /note="Similar to Chlorella virus NC-1A modification
FT                   methylase cvibi cvibiM SWALL:MTC1_CHVN1 (SWALL:Q01511) (260
FT                   aa) fasta scores: E(): 3.4e-13, 28.84% id in 260 aa, and to
FT                   Bacteriophage phiE125 gp27 27 SWALL:Q8W6S4 (EMBL:AF447491)
FT                   (262 aa) fasta scores: E(): 3.5e-81, 68.82% id in 263 aa"
FT                   /db_xref="GOA:Q7WDH1"
FT                   /db_xref="InterPro:IPR012326"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDH1"
FT                   /protein_id="CAE35580.1"
FT                   /translation="MASPIIPWIGGKRRLADRLLPYFPSHQCYVEPFAGGAAMFFLRPV
FT                   PADVEVLNDVNGELVNLYRVVKHHLEEFVRQFKWALSSRQVFKWLQVTPEETLTDIQRA
FT                   ARFFYLQHSAFGGRVDGQTYGVATTAPPGLNLLRIEENLSTAHLRLASAYIENLPWQDC
FT                   IRRYDRSHTFFFMDPPYWETEGYGVEFGWSQYEQLADMLGKLKGKAVVTLNDHPDIREL
FT                   FKAFTIESTDIRYTVGGGRGIDRSEVVIFSWDVKSDPVALF"
FT   misc_feature    complement(3660..4349)
FT                   /note="HMMPfam hit to PF02086, DE D12 class N6
FT                   adenine-specific DNA methyltransferase, score 2.3e-16"
FT   CDS             complement(4545..4898)
FT                   /transl_table=11
FT                   /locus_tag="BB3608"
FT                   /product="putative tail fiber assembly protein"
FT                   /note="Similar to Ralstonia solanacearum putative tail
FT                   fiber assembly-like protein rsc1920 or rs03489 SWALL:Q8XY43
FT                   (EMBL:AL646067) (250 aa) fasta scores: E(): 2.8, 29.8% id
FT                   in 104 aa, and to Yersinia pestis lambda tail fiber
FT                   assembly protein g y1053 or ypmt1.03C SWALL:O68721
FT                   (EMBL:AF074611) (202 aa) fasta scores: E(): 0.6, 29.12% id
FT                   in 103 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDH0"
FT                   /protein_id="CAE35581.1"
FT                   /translation="MKKTVFQTDLDGLYLYATVANELALEPGAFNIPFGAQDVPPPAPS
FT                   AGQVARWVGSAWVLVEDHRTAQFYRTDSGEPYAFGATIEVDGVAVSYRGWGAVPAWLTD
FT                   IQPQPPEEPVPEM"
FT   CDS             complement(4895..5149)
FT                   /transl_table=11
FT                   /locus_tag="BB3609"
FT                   /product="phage-related hypothetical protein"
FT                   /note="no significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDG9"
FT                   /protein_id="CAE35582.1"
FT                   /translation="MDPRVISHVQGPRFLSTEKGQTLAVRRDPAFAEVNLRGTNASPRR
FT                   SPGLGRLPERVASRVDGLNLATSHGSCICSANPISGETL"
FT   CDS             complement(5152..5952)
FT                   /transl_table=11
FT                   /locus_tag="BB3610"
FT                   /product="phage-related hypothetical protein"
FT                   /note="Similar to Yersinia pestis putative bacteriophage
FT                   tail fiber protein stf or ypo1252 SWALL:Q8ZGN4
FT                   (EMBL:AJ414147) (259 aa) fasta scores: E(): 0.013, 30% id
FT                   in 140 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDG8"
FT                   /protein_id="CAE35583.1"
FT                   /translation="MRRIDTVDGLFEAGDPTIRKPGSRLPAWYMNLLQEELCSVVEGSG
FT                   LVLDPEDPTQLYQAIQRLVAEGQSGFVVRRASIPTEKIADEVYVAGWGEMVWVETTYFT
FT                   GYRSPLCGRPVDGHTQVPLVREVDAVGGLLSKVAYAGLWGYAREENLVVSQAAWTASIG
FT                   AHHFVDVSETQFRVPDLRNMFRRYTGTDADTANARVLGGRQADQVKSHRHALNGYLMAP
FT                   TASGGGLFGPNTGSSSGQAANYIEFSGGAESRPINTAYHPRLHA"
FT   CDS             complement(5949..6527)
FT                   /transl_table=11
FT                   /locus_tag="BB3611"
FT                   /product="putative phage tail protein"
FT                   /note="Similar to Bacteriophage SfV tail protein orf20
FT                   SWALL:O22003 (EMBL:U82619) (194 aa) fasta scores: E():
FT                   1.3e-08, 30.3% id in 198 aa, and to Neisseria meningitidis
FT                   hypothetical protein Nma1324 nma1324 SWALL:Q9JUG4
FT                   (EMBL:AL162755) (186 aa) fasta scores: E(): 2.3e-26, 43.85%
FT                   id in 187 aa"
FT                   /db_xref="InterPro:IPR018755"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDG7"
FT                   /protein_id="CAE35584.1"
FT                   /translation="MIYSRLLALLLPPVSYDRNGPHLRAELECEANVLDTVAAYAKTAV
FT                   DSITPFFSTDLLPDWERVCAITPPAGTNYQQRLDAVLAKLRETGGLSIPYFIDLAKRLG
FT                   YDIQISEFAPFYLDYSQLDVDPLYEEEVVWVWHVQVNGGSTRSFPFYLDYSCVDEALLS
FT                   FGDPAIEAVIEDLKPGYTFAIFDYEEPQP"
FT   CDS             complement(6524..7594)
FT                   /transl_table=11
FT                   /locus_tag="BB3612"
FT                   /product="putative phage tail protein"
FT                   /note="Similar to Bacteriophage SfV tail protein orf19
FT                   SWALL:Q8SBG4 (EMBL:U82619) (352 aa) fasta scores: E():
FT                   4.5e-16, 30.44% id in 335 aa, and to Neisseria meningitidis
FT                   hypothetical protein Nma1323 nma1323 SWALL:Q9JUG5
FT                   (EMBL:AL162755) (351 aa) fasta scores: E(): 4.4e-55, 47.14%
FT                   id in 350 aa"
FT                   /db_xref="InterPro:IPR006949"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDG6"
FT                   /protein_id="CAE35585.1"
FT                   /translation="MMPYIVPTFEQTRGKLLRDLKNLRPDVDIGPDSDWYIRATSVASC
FT                   AEGLYAHQGWIVKQIFPDTADTEYLELHAALKGLNRKPAVAASGTITLTGEVGREAPAG
FT                   LEAKAADGRVFVTTISIVIGEAGSAEVAAVAAVAGVAGNTSPGATLTLGAAPLRIDSRA
FT                   TVVSMLGGVERETDTELLARLLEIIRRPPAGGNKYDFRRWAMEVPGVTNAFAYPLRRGL
FT                   GTIDVAVISGSGLPSEDILQAVRDHIEDVRPVAGKSSVIFAPTERFVDLSVQVALKGLT
FT                   LAEAEVSIGDVLQGQFGVLSPGETWIRSQAEALISNIAGVTDRQILIPGVNVVPVVDAE
FT                   VVEWLRRGTLTIEAME"
FT   CDS             complement(7591..7941)
FT                   /transl_table=11
FT                   /locus_tag="BB3613"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Neisseria meningitidis hypothetical
FT                   protein Nma1322 nma1322 SWALL:Q9JUG6 (EMBL:AL162755) (115
FT                   aa) fasta scores: E(): 8.8e-20, 54.31% id in 116 aa, and to
FT                   Haemophilus influenzae mu-like prophage flumu protein gp46
FT                   hi1519 SWALL:VG46_HAEIN (SWALL:P44239) (135 aa) fasta
FT                   scores: E(): 0.02, 36% id in 100 aa"
FT                   /db_xref="InterPro:IPR010877"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDG5"
FT                   /protein_id="CAE35586.1"
FT                   /translation="MDVLIDPTTADYAGQRITTLANAVYLRLKTPLGSYWADPTLGSRL
FT                   HELQREKDLTRVYTLARQYAEQALVPLIEDGRAQRITVTATRLQPGRCLLHVSVVDQGG
FT                   VEQIFTHHVKVA"
FT   CDS             complement(8005..8646)
FT                   /transl_table=11
FT                   /locus_tag="BB3614"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Neisseria meningitidis hypothetical
FT                   protein nma1321 nma1321 or nmb1111 SWALL:Q9JQQ9
FT                   (EMBL:AL162755) (222 aa) fasta scores: E(): 7.4e-29, 43.06%
FT                   id in 209 aa, and to Bacteriophage Mu protein gp45 45
FT                   SWALL:VG45_BPMU (SWALL:Q9T1V4) (197 aa) fasta scores: E():
FT                   3.9e-06, 30.37% id in 214 aa"
FT                   /db_xref="InterPro:IPR013046"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDG4"
FT                   /protein_id="CAE35587.1"
FT                   /translation="MFREIDKRIGRALGQIRQAFRAVIARVNSSPSVQLLSGQGVAGEQ
FT                   LRDNELFQHYGFTSCPPSGTMAIALPLGGKTSHGVIIATEHATYRLVGLQEGELAIYTD
FT                   EGTKLVMKRGRVIETDCDEYRLTCKTFTVNATESSTFTTPTLTASDKAVINGLVTGKGG
FT                   LALSGGEGGVAAQIEGGLRATGDIRSGNVSLDDHDHNETGAVTGKPNPIG"
FT   misc_feature    complement(8419..8442)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             complement(8636..9739)
FT                   /transl_table=11
FT                   /locus_tag="BB3615"
FT                   /product="putative phage tail protein"
FT                   /note="Similar to Bacteriophage SfV tail protein orf16
FT                   SWALL:Q8SBG7 (EMBL:U82619) (359 aa) fasta scores: E():
FT                   1.6e-13, 27.02% id in 370 aa, and to Neisseria meningitidis
FT                   hypothetical protein nma1830 nma1830 or rth43 SWALL:Q9JRB5
FT                   (EMBL:AL162757) (379 aa) fasta scores: E(): 1.9e-68, 53.16%
FT                   id in 348 aa"
FT                   /db_xref="InterPro:IPR010689"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDG3"
FT                   /protein_id="CAE35588.1"
FT                   /translation="MASHVDPRNAVSLLIGGKVHSTWSTYSIDSDLMTPADAWEVGLGL
FT                   PEKEFPLEVKAGVAVEVRVGTDPVLRGRVDAVTRRTGRPQRVLKMSGRDNAAILVDCSA
FT                   PIFVAKEVTLAEIVAKVVRPLGITRVRIDADSAGGANEKINVEPGSTAWDVLQQAAEAN
FT                   GLWPWFEPDGTLVVGGPDYSTPPVATLIERFDGKGNNTLVLEHASSINDRYSEVTVLAQ
FT                   GHGTDEHTGQNAIRAMAKDAEVAIYRPLIVTNGDMQNSDAASSFARKLLADGRLAGESL
FT                   SAVVKGHRTSDGVLWSPGQRVHVKSESLGIDAIWFLMGRQFIGGRESETVTILTLKEDA
FT                   VWTLDAYQRRKKGRKGKKLQAVILDVS"
FT   CDS             complement(9723..10982)
FT                   /transl_table=11
FT                   /locus_tag="BB3616"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Bacteriophage SfV tail/DNA circulation
FT                   protein orf15 SWALL:Q8SBG8 (EMBL:U82619) (447 aa) fasta
FT                   scores: E(): 1.2e-08, 25.29% id in 431 aa, and to Neisseria
FT                   meningitidis hypothetical protein nma1831 nma1831 or rth42
FT                   SWALL:Q9JR33 (EMBL:AL162757) (455 aa) fasta scores: E():
FT                   2.1e-32, 35.89% id in 468 aa"
FT                   /db_xref="InterPro:IPR009826"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDG2"
FT                   /protein_id="CAE35589.1"
FT                   /translation="MSWKDNLLDASFKGVKFDCVRTREVDERDVGEYLYPYLDGGDTDD
FT                   LGRGIRRFDITAVFWGDDYETRLQALLAKLEEPGPGELIHPIYGSIEYAQLKGKAVDHD
FT                   ADDPDYATLRMTFLETKPGNPFFVRELPAQKADAASQYADLATELGTSQFASYLSTLKA
FT                   KPGILSRLNAMRDVMAGTLSSIRGVVDSWVSASMDLVEFPRAFVADLSSGVSGLLDLRA
FT                   LEGDGLMPNWRGLAADADSVIRLPKGVSSGNVPSRFVATKGSTTAVPMEPADLVAIEAV
FT                   TQVAVAASVTEKAADVLAEQAENPTLAPSEVEQIANDVRQVIQDAVDTYRDNFPPDMAL
FT                   PICDSLRDAAKSIQDAAIEVINLRPPLQRRVVETPTNLRLLAFQWYGDHRRAPELGRLN
FT                   PTLRNPNDIRAGDTLNGFAR"
FT   CDS             complement(10982..13186)
FT                   /transl_table=11
FT                   /locus_tag="BB3617"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Neisseria meningitidis hypothetical
FT                   DNA-binding protein nma1833 or rth40 SWALL:Q9JQZ6
FT                   (EMBL:AL162757) (559 aa) fasta scores: E(): 9.2e-48, 36.51%
FT                   id in 545 aa, and to Salmonella typhi putative
FT                   bacteriophage protein sty1629 SWALL:Q8Z6T7 (EMBL:AL627270)
FT                   (821 aa) fasta scores: E(): 1.8e-05, 23.12% id in 614 aa"
FT                   /db_xref="InterPro:IPR010090"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDG1"
FT                   /protein_id="CAE35590.1"
FT                   /translation="MSGRDLRLALVATAEDRGATAKLRQINRAAERESERTSRQTTRNA
FT                   ERSAQDQERAAQRARTASEKMFRDRERLGIRSEQRIRREIQLTEASYNRLARTGRLSTN
FT                   EQARAFASMQQRVRALRQEMLGVEQQQGRLSRGMSFGSRALQGYQAAAGAIAAGGYMLA
FT                   QPIRRNMEYDRRLAMMANTAFADRDVAGRQRGATELDAAIRKAVALGGNRDQAAETLDA
FT                   LIASGAMSQDASVRLLPTLQKNAVATGADPRDLANIAIRGMQTFGIAESDIPMALDMAI
FT                   KAGQEGGFEIKDMARWLPQQMAAARSAGMSGMGDFGALLAANQAAMITAGTPDEAGNNL
FT                   VNWLAKMTSREASMSAKKIQIRPGKSIDLVGTLSAAREKDINPMDAFVGVIDQIVGSNK
FT                   EYQAIQARMRTASTTGERQAILASQADMLQGSAIGQLIPDRQAMMALVGYMNNRDYVAD
FT                   IRRILPEARGTADTNHALIASTPSFQVERAKNVALFAENDGFAGFSQVVGEVSGKLADY
FT                   GEKYPGLAQAMVTATQSLNALAAAAAAASVIGLLRGGAGAAAATRGAGGVAGTARRGVG
FT                   LSLGRSAGAVALGVGAKELWDIQHSDMAVGERNAAMVQAVGGSGGGFAGALAGVKAGSA
FT                   FGPWGAAAGGVAGGLFGGYIGDELGALLGKHVFNANRDLPAEMSKAPTVATGGMDPAAL
FT                   QAAMIAARTQPQEIKVTVDVQNGNIVAAVNQANAQQARRH"
FT   CDS             complement(13193..13333)
FT                   /transl_table=11
FT                   /locus_tag="BB3618"
FT                   /product="phage-related hypothetical protein"
FT                   /note="no significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDG0"
FT                   /protein_id="CAE35591.1"
FT                   /translation="MTFPELSAAIKAVGQLLQPGRPGRAQSSAKTTRIKSLRRRPPTSE
FT                   A"
FT   CDS             complement(13330..13722)
FT                   /transl_table=11
FT                   /locus_tag="BB3619"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Neisseria meningitidis hypothetical
FT                   protein nma1835 nma1835 or rth39 SWALL:Q9JQN5
FT                   (EMBL:AL162757) (129 aa) fasta scores: E(): 0.00012, 35.18%
FT                   id in 108 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDF9"
FT                   /protein_id="CAE35592.1"
FT                   /translation="MTKATFPTTEVGRLVYGIEHDGQMHFDFEVRLPTVADNIAALEEV
FT                   GSSSGMRVTTAMLVSSIVRLGAIPQEQITYEFLATGLVDEDFDVLTAAQDRLKKKRKDW
FT                   SESLSTTGAPSSSSDATDTPNPASAA"
FT   CDS             complement(13719..14093)
FT                   /transl_table=11
FT                   /locus_tag="BB3620"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Neisseria meningitidis hypothetical
FT                   protein Nmb1105 nmb1105 SWALL:Q9JZD3 (EMBL:AE002460) (125
FT                   aa) fasta scores: E(): 1.5e-22, 50.4% id in 125 aa, and to
FT                   Neisseria meningitidis hypothetical protein nma1840 nma1840
FT                   or rth36 SWALL:Q9JR01 (EMBL:AL162757) (124 aa) fasta
FT                   scores: E(): 3.5e-18, 48.76% id in 121 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDF8"
FT                   /protein_id="CAE35593.1"
FT                   /translation="MALEEFAGAMVLEVDGQEVEVVDLSPTVRTGKKPVKTMNRDMRVK
FT                   GFARGTVEYDLRLTVVIPLSGDLDWDDITGAKLTIYPAVPGGRRTSYLDCVTVEVGETY
FT                   NVDNEARRDVSMFATRKVIE"
FT   CDS             complement(14109..15536)
FT                   /transl_table=11
FT                   /locus_tag="BB3621"
FT                   /product="putative phage tail sheath protein"
FT                   /note="Similar to Haemophilus influenzae mu-like prophage
FT                   flumu tail sheath protein hi1511 SWALL:VPL_HAEIN
FT                   (SWALL:P44233) (487 aa) fasta scores: E(): 3e-32, 33.6% id
FT                   in 491 aa, and to Neisseria meningitidis hypothetical
FT                   protein nma1841 nma1841 or rth35 SWALL:Q9JRG0
FT                   (EMBL:AL162757) (475 aa) fasta scores: E(): 1.5e-76, 52.41%
FT                   id in 477 aa"
FT                   /db_xref="InterPro:IPR009375"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDF7"
FT                   /protein_id="CAE35594.1"
FT                   /translation="MASPNISFDQIPASIRKPGQYFEFNTKLAVRTLPGNLQRVLVVGQ
FT                   RLAEVVSNIAALEPVDVFSDVDAAVYFGYGSIAHQMVKAAIKANPYVQLTVIAFDDDEA
FT                   GVAATGTATVTGTATAPGTITLVVGDARVAVSVETGATAAQVATKLAAAATAAIELPIT
FT                   AAAAAGVITLKAKHKGAAGNDIKVKAEARTAGLTADVTAMADGQIDPDLAPALAVAFAA
FT                   GHNLVASPFATTEALATLRTHLEAVGSPMEQRDAIGVAGTPATLSAATTLAGAINSGLM
FT                   TLGWHNGSVLSAAQIAAAYASVIAFEEDPARPLNTLELKGLDVTDIASQPGRTEQENAL
FT                   YNGVTPFEIGPGNRVQIVRAVTTYTVNPQGVDDVALLDLTTMRTLHYVRKASRERIALR
FT                   FPREKLSEKTPPKVRSELLDVLVKCEELEILEAVEANKDALILERDSQDVNRLNARIPA
FT                   DVVNGLHVFAGRIDLLL"
FT   CDS             complement(15542..15724)
FT                   /transl_table=11
FT                   /locus_tag="BB3622"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Neisseria meningitidis hypothetical
FT                   protein Nma1842 nma1842 SWALL:Q9JTD3 (EMBL:AL162757) (62
FT                   aa) fasta scores: E(): 2.4e-05, 47.45% id in 59 aa, and to
FT                   Neisseria meningitidis hypothetical protein Nmb1103 nmb1103
FT                   SWALL:Q9JZD5 (EMBL:AE002460) (65 aa) fasta scores: E():
FT                   0.14, 37.28% id in 59 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDF6"
FT                   /protein_id="CAE35595.1"
FT                   /translation="MTKTLTVVAAPGLKVPREENAREYITDKAAVTVPATAYYLRRKAS
FT                   GELILPETKPAKKGA"
FT   CDS             complement(15724..16419)
FT                   /transl_table=11
FT                   /locus_tag="BB3623"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Neisseria meningitidis hypothetical
FT                   protein nma1843 nma1843 or rth34 SWALL:Q9JQN9
FT                   (EMBL:AL162757) (222 aa) fasta scores: E(): 8.7e-24, 41.42%
FT                   id in 210 aa, and to Neisseria meningitidis hypothetical
FT                   protein Nmb1102 nmb1102 SWALL:Q9JZD6 (EMBL:AE002460) (197
FT                   aa) fasta scores: E(): 2.2e-15, 39.34% id in 183 aa"
FT                   /db_xref="InterPro:IPR014972"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDF5"
FT                   /protein_id="CAE35596.1"
FT                   /translation="MTEPQYFDPYTRIEAAICGRLKAGLGSMVRGVASYGGELDDDLGQ
FT                   IVRVLPAAWVTFGGITGTRPYSTSKERWVATGRFAVMAGQLNARSEEAMRRGGHRPQEI
FT                   GTNPLVWAIRRLLIQQDLTDQDGRLEISALRPGRVRTLFNTQLRGEAVSVFACEFETDW
FT                   IEEALVNGRFPSAPAEGAEESYDALFARYTGSRSPIDPDLNRVDLNYHLTPIKPTPDAT
FT                   DSVLFDKED"
FT   CDS             complement(16416..16847)
FT                   /transl_table=11
FT                   /locus_tag="BB3624"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Neisseria meningitidis hypothetical
FT                   protein Nmb1101 nmb1101 SWALL:Q9JZD7 (EMBL:AE002460) (140
FT                   aa) fasta scores: E(): 3.3e-17, 44.52% id in 137 aa, and to
FT                   Bacteriophage Mu protein gp36 36 SWALL:VG36_BPMU
FT                   (SWALL:Q9T1V9) (141 aa) fasta scores: E(): 0.012, 26.92% id
FT                   in 130 aa"
FT                   /db_xref="InterPro:IPR009752"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDF4"
FT                   /protein_id="CAE35597.1"
FT                   /translation="MLYATRQDMIDTFGEEEIIRLTDSNAEPGVINDVPLNAALSRASV
FT                   EIDGYVASRYPKPFDPVPTILVGIACDLARYRLCGAGGRLVTDEMRDRHKDAIGLLKMI
FT                   ARGEVKLGADPTGMVVEPRNSVQFKPGTSRLGDALRDYP"
FT   CDS             complement(16945..17217)
FT                   /transl_table=11
FT                   /locus_tag="BB3625"
FT                   /product="phage-related hypothetical protein"
FT                   /note="no significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDF3"
FT                   /protein_id="CAE35598.1"
FT                   /translation="MPLYSVIQPIKVGGKVHKPGGDPVELSEAVAAGLAGYVGPARDQQ
FT                   TKEPAATSDTGPAPNNPPPPTATPKKTAVTKSATPAKKATKRQAK"
FT   CDS             complement(17289..18236)
FT                   /transl_table=11
FT                   /locus_tag="BB3626"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Salmonella typhi hypothetical protein
FT                   Sty1620 sty1620 SWALL:Q8Z6U6 (EMBL:AL627270) (317 aa) fasta
FT                   scores: E(): 1.4e-22, 29.56% id in 318 aa"
FT                   /db_xref="PDB:3BJQ"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDF2"
FT                   /protein_id="CAE35599.1"
FT                   /translation="MSQMSPGQARVVDPILSTHARGYRQSTLIGKKLFPVAPVAQYGGK
FT                   ILTFGKEAFRLYNTKRAPGANTKRIDFGYEGDPYSIVPSALEAKVPRELMRDASQVPGI
FT                   DLGARSVNTVLRIMALAHEHECAQIALDPAKYNADHKVKLVGSARWTSPDSDPTKDVET
FT                   AKEAIADSIGMEPNRLMLSRKALSACKYHPKLIERVKYTRAESITIDMLKALWEVEEIV
FT                   VGTARVATGANDSFGDVWGPDVWLGYVSDNPDPSVEEPSFGYTYQIEGHPLVEVPYWDN
FT                   NAKSWIYGVSDDNTPALSGMLAGYLIEDAGLPAA"
FT   CDS             complement(18292..18651)
FT                   /transl_table=11
FT                   /locus_tag="BB3627"
FT                   /product="phage-related putative exported protein"
FT                   /note="Similar to Salmonella typhi putative membrane
FT                   protein sty1621 SWALL:Q8Z6U5 (EMBL:AL627270) (112 aa) fasta
FT                   scores: E(): 3.9e-05, 35.29% id in 102 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDF1"
FT                   /protein_id="CAE35600.1"
FT                   /translation="MSQKTSILTLSLVAAASISADTFVTLAGEPAAAGEAAIGIAIAPA
FT                   AAGEYFPYDVLGTSTAKAGAAITKGQNLEVGAGATAVPQTAGVVVAIALEDAEADETVE
FT                   VLLIQGGTAPASGGA"
FT   misc_feature    complement(18571..18651)
FT                   /note="Signal peptide predicted for BB3627 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.604 between residues 27 and 28"
FT   CDS             complement(18697..19704)
FT                   /transl_table=11
FT                   /locus_tag="BB3628"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Salmonella typhi hypothetical protein
FT                   Sty1619 sty1619 SWALL:Q8Z6U7 (EMBL:AL627270) (371 aa) fasta
FT                   scores: E(): 3.3e-20, 32.97% id in 370 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDF0"
FT                   /protein_id="CAE35601.1"
FT                   /translation="MTTQTASFAQPRIPIFRAGTHVASDGRRVTITVADLQEIADTYDP
FT                   MVQRAPHVIGHPELDDPAWGWAKSLTVDGEYLVVESEQIEVNFAQMVNEGRFPNRSASF
FT                   YLPDTPGNPKPGKKYIKHIGWLGAAPPAVTGLPAVKFSADSKALSFSFPADFAGNPKEP
FT                   SEMDKTAEEQQRQKEADLAAREAKLKQDEERVAQGQQALDKQAKEAARSQAVQFAQTLA
FT                   KDGKLLPAEVEPVIELLLVQPNDSAPLSFSQAGTQVSKPASTVLRDLLKALPSRIDYRE
FT                   KSPDNAGNTTAISFAAPAGVHVDTTRTDLHARATQFQAKNPNVSWLDAVKAVGG"
FT   CDS             complement(19939..20496)
FT                   /transl_table=11
FT                   /locus_tag="BB3629"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Haemophilus influenzae mu-like prophage
FT                   flumu g protein 2 hi1568 SWALL:VPG2_HAEIN (SWALL:P45255)
FT                   (138 aa) fasta scores: E(): 4.5e-06, 39% id in 100 aa, and
FT                   to Neisseria meningitidis hypothetical protein nma1849
FT                   nma1849 or rth29 SWALL:Q9JR88 (EMBL:AL162757) (165 aa)
FT                   fasta scores: E(): 2.4e-09, 32.63% id in 190 aa"
FT                   /db_xref="InterPro:IPR006522"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDE9"
FT                   /protein_id="CAE35602.1"
FT                   /translation="MIRYTVTFDAVQKAFTALEKGLLDARPLMKEVSFLMSDAVAENFE
FT                   QGGRPKWLGLAPSRTKPSKLQQSGRLRNSIVQYWDASSALVGTNVVYARIHQEGGEIQF
FT                   APRSGTTRLRTNARGNLLRQGANGNLAVFARDSHKRVRTVRWTNESGWTVTIPARPFLQ
FT                   LTEDDNLQIEAAGQRYLQKLVE"
FT   CDS             complement(20638..21978)
FT                   /transl_table=11
FT                   /locus_tag="BB3630"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Bacteriophage Mu f protein f or 30
FT                   SWALL:VPF_BPMU (SWALL:Q01259) (439 aa) fasta scores: E():
FT                   2.4e-39, 34.06% id in 455 aa, and to Escherichia coli
FT                   O157:H7 hypothetical protein Ecs4971 ecs4971 SWALL:Q8X313
FT                   (EMBL:AP002567) (441 aa) fasta scores: E(): 1.9e-40, 33.7%
FT                   id in 454 aa"
FT                   /db_xref="InterPro:IPR006528"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDE8"
FT                   /protein_id="CAE35603.1"
FT                   /translation="MPSAPDLAYAIGLPPADAIEYFKGRGYRLSANALDAWDAARERAF
FT                   TVTGIARLDVLQDIKGELQRSLNDGKTYASFKAGVEDTLRTRGWHRLGRGLHADAETGE
FT                   VAANLPGYRLKNIFRTNMQSALMAGKYRQLSQQVDIAPFWQYVAVMDGKTRPGHAAMHG
FT                   KVFRYDDPVWNSHYPPCDYQCRCGIRALSQAMIDARELDVLDGEQYLSDAEQLVGNASR
FT                   PAKVFTDPTTKARFVPGPGFGRRPDLASWGRDGLAQVLGDKVEHGSPDLAAGVMAANTR
FT                   LQTPLAAEYRRWAQGVLDAGQARSTYRVLGTASPAVIEAVAQRGVDMVSAALAMRDTEL
FT                   LHLVRQTKSKRGAALSMEDILNLPALLANARAVLWDTDDPALVYVLRLVGRDAKKAVVR
FT                   VNWTTRVNTEAGREAITANAIRTAGRVQVGDLKAKRYEVIEGGLVEE"
FT   CDS             complement(21971..23506)
FT                   /transl_table=11
FT                   /locus_tag="BB3631"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Bacteriophage Mu protein gp29 29
FT                   SWALL:VG29_BPMU (SWALL:Q9T1W5) (512 aa) fasta scores: E():
FT                   1.5e-22, 28.6% id in 472 aa, and to Neisseria meningitidis
FT                   hypothetical protein Nma1851 nma1851 SWALL:Q9JTD2
FT                   (EMBL:AL162757) (519 aa) fasta scores: E(): 2.5e-24, 27.33%
FT                   id in 472 aa"
FT                   /db_xref="InterPro:IPR009279"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDE7"
FT                   /protein_id="CAE35604.1"
FT                   /translation="MATKKGKNVRLAPSPELNREIATIADGMDITRGYVGPLLVNTDSV
FT                   LRVRSQSNLTLYESVYSDPQVKSVFAQRQLAVTQCNWRIEPASEAAVDKRAADALSAEL
FT                   NRVGWDRVTSLMLFGVFYGYAVSELIYARMDGLVGIEKIKVRNRRRFRFDPEGGLRMLT
FT                   PNDMLEGVPAEGPYFWHFATGADNDDEPYGQGLGHWLYWPVFFKRQGIRFWLTFLDKFG
FT                   QPSRVGKYDAQSATPADKSRLLQAAAAMGTDSAVIIPEGMTLELLEAARSGAADYKSLH
FT                   DTMDNTMAKVVLGQTASSQGTPGRLGNDQLQGDVRRDLIKADADLVCESFNLGPARWLT
FT                   AWNFPDAQPPRVFREVEEPEDLKTRAERDEIVARTTGFRPTLSYVQQTYGGMWEKSPAP
FT                   VPTVGAPTPVAFAAPVAGRRADPTLAPLVAAQARLDRAVQSLPGDQVDADMDPVLAPVV
FT                   AAIRAGASSEEAAELLLKAIPEMDDAALHERLARAIFVADLWGQISDQDAGNA"
FT   CDS             complement(23506..25188)
FT                   /transl_table=11
FT                   /locus_tag="BB3632"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Bacteriophage Mu protein gp28 28
FT                   SWALL:VG28_BPMU (SWALL:Q9T1W6) (551 aa) fasta scores: E():
FT                   1.6e-66, 40.15% id in 533 aa, and to Escherichia coli
FT                   O157:H7 putative portal protein ecs4969 SWALL:Q8X315
FT                   (EMBL:AP002567) (554 aa) fasta scores: E(): 2.2e-66, 38.3%
FT                   id in 530 aa"
FT                   /db_xref="InterPro:IPR012036"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDE6"
FT                   /protein_id="CAE35605.1"
FT                   /translation="MAVVIKPLSSTLRVVEWDELPPSVREVPEGFNPLADGVLMRHQVE
FT                   WLKIRAAIKVAPKGRRTGITFCEALDDTIKAASRKSAGGDNIFYVGDTKEKGLEFIGYC
FT                   AKFARVIAQAQRQGVSEIEEFLFEDQDEHGHSRQITSYRIRFASGFQITALSSRPANIR
FT                   GLQGKVVIDEAAFHPDVQGVIDAATALLIWGGEIAIISSHNGKGNPFNLLIRDIEAGRY
FT                   GEDAAVYRVTFDDAVGNGLYERVCLMKRWQATAEGKAKWYAKIRNSYGVRRAAMREELD
FT                   AIPRDGSGVCLPSIWIENSMREERPVLRLALGDDFLQLTTRERESFAQDWIDTHLAPLL
FT                   ARLNPKERHGLGQDFARHRDFSTIVPLAVRLNLTRHCPFIVEMHRVPTRQQEQILWAIL
FT                   KGLPRFTAAMDATGSGETLAEYTADEFGHHKVAQIKLNRAWYGTWMPKLIQAFEDGVID
FT                   LPKDDNTAQDLRDIEEIDGIPMVAAIRKADLKDPDLKRHGDTAIALALAWFATLTDVVP
FT                   IESQSTGPRDSLADGAQEGVPGATRFTDTGFGTVAGGTDFGGF"
FT   CDS             complement(25188..25739)
FT                   /transl_table=11
FT                   /locus_tag="BB3633"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Haemophilus influenzae mu-like prophage
FT                   flumu protein gp27 hi1499 SWALL:VG27_HAEIN (SWALL:P44223)
FT                   (189 aa) fasta scores: E(): 0.00053, 27.95% id in 186 aa,
FT                   and to Bacteriophage Mu protein gp27 27 SWALL:VG27_BPMU
FT                   (SWALL:Q9T1W7) (191 aa) fasta scores: E(): 0.0043, 26.34%
FT                   id in 186 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDE5"
FT                   /protein_id="CAE35606.1"
FT                   /translation="MARKSNIKRLPVPVRQHLERLLREDRLTLDELIADLRAKFPGEEP
FT                   PSRSSLHRYKTSFDELTGRMREIEAGAAAMIDELGEGVGDKAGALLAQAVTTLAANAAL
FT                   AAHDTDKAVSIKEVAQLARAAKAAMEARTMSIKERQAVERAAREKLLSEQDANLQEAAR
FT                   AQGMDADQVKFWREKVLGIV"
FT   CDS             complement(25743..26042)
FT                   /transl_table=11
FT                   /locus_tag="BB3634"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Bacteriophage Mu hypothetical protein
FT                   gp26 26 SWALL:VG26_BPMU (SWALL:Q9T1W8) (96 aa) fasta
FT                   scores: E(): 8.5e-13, 51.11% id in 90 aa, and to
FT                   Escherichia coli O157:H7 hypothetical protein Ecs4967
FT                   ecs4967 SWALL:Q8X317 (EMBL:AP002567) (96 aa) fasta scores:
FT                   E(): 4.1e-12, 48.93% id in 94 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDE4"
FT                   /protein_id="CAE35607.1"
FT                   /translation="MSKTKFADFLRHDQRLVILRLLSELAGYRANSSVLASALEGYGHA
FT                   MTRDQVKTELRWLEEQGLVSVEDMEPVLVATLLERGEDVAKGRATVPGVKRPGA"
FT   CDS             complement(26053..26349)
FT                   /transl_table=11
FT                   /locus_tag="BB3635"
FT                   /product="phage-related hypothetical protein"
FT                   /note="no significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDE3"
FT                   /protein_id="CAE35608.1"
FT                   /translation="MSFDLNVSSWLQYLVSGAVGVYAYLAKRDAANAADVSTLQQRVTA
FT                   LEEQMRHLPDQSLVNELAGDMKAVKVGLEGIREAIAPLARSVDRINDYLLKHK"
FT   misc_feature    complement(26272..26322)
FT                   /note="1 probable transmembrane helix predicted for BB3635
FT                   by TMHMM2.0 at aa 10-26"
FT   CDS             complement(26346..26441)
FT                   /transl_table=11
FT                   /locus_tag="BB3636"
FT                   /product="phage-related hypothetical protein"
FT                   /note="no significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDE2"
FT                   /protein_id="CAE35609.1"
FT                   /translation="MALKGMYDLYGVCAGRFVDYVDHVNRPRESQ"
FT   CDS             complement(26452..26868)
FT                   /transl_table=11
FT                   /locus_tag="BB3637"
FT                   /product="phage-related hypothetical protein"
FT                   /note="no significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDE1"
FT                   /protein_id="CAE35610.1"
FT                   /translation="MNLAWSIVAGLVIAAISLLLGYDAGYDSGALAVQAEHDRTEVVSL
FT                   GTRLNQVADDIQQSRAASKAMREALARIEVADKTSTKELKNALAKTARERVLCSFDADS
FT                   MRLITAAADAADQRAAGGIRGAVSAGDPANRQQP"
FT   misc_feature    complement(26806..26868)
FT                   /note="Signal peptide predicted for BB3637 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.928) with cleavage site
FT                   probability 0.474 between residues 21 and 22"
FT   CDS             complement(26865..27500)
FT                   /transl_table=11
FT                   /locus_tag="BB3638"
FT                   /product="putative lytic murein transglycosylase precursor"
FT                   /EC_number="3.2.1.-"
FT                   /note="Similar to Escherichia coli soluble lytic murein
FT                   transglycosylase precursor slt or slty or b4392
FT                   SWALL:SLT_ECOLI (SWALL:P03810) (645 aa) fasta scores: E():
FT                   0.00016, 28.49% id in 179 aa, and to Salmonella typhimurium
FT                   putative soluble lytic murein transglycosylase stm4217
FT                   SWALL:Q8ZKI8 (EMBL:AE008897) (201 aa) fasta scores: E():
FT                   4.2e-47, 60.93% id in 192 aa"
FT                   /db_xref="GOA:Q7WDE0"
FT                   /db_xref="InterPro:IPR008258"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDE0"
FT                   /protein_id="CAE35611.1"
FT                   /translation="MMRRLLRRAWSGAVLLAIASCAVQPVPAAEVPQAALKHRSELTRN
FT                   ARALVGMDAPVSMFAAQIHQESGWRSNARSPVGAQGMAQFMPATAEWIAGLFPALASND
FT                   PYNPSWAMRALVTYDLWLYERIRAASACQRWAFALSAYNGGLGWVNRDKKLASSKGLDP
FT                   LVWFGSVEQVNAGRSAANWRENRDYPKRILYRHQPTYIQAGWGLGVCS"
FT   misc_feature    complement(27006..27374)
FT                   /note="HMMPfam hit to PF01464, DE Transglycosylase SLT
FT                   domain, score 3e-08"
FT   misc_feature    complement(27417..27500)
FT                   /note="Signal peptide predicted for BB3638 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.789 between residues 28 and 29"
FT   misc_feature    complement(27438..27470)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(27500..27880)
FT                   /transl_table=11
FT                   /locus_tag="BB3639"
FT                   /product="phage-related membrane protein"
FT                   /note="Similar to Salmonella typhi hypothetical protein
FT                   Sty1608 SWALL:Q8Z6V8 (EMBL:AL627270) (116 aa) fasta scores:
FT                   E(): 8.5e-16, 54.63% id in 108 aa, and to Salmonella
FT                   typhimurium putative inner membrane protein stm4218
FT                   SWALL:Q8ZKI7 (EMBL:AE008897) (95 aa) fasta scores: E():
FT                   1.3e-09, 47.27% id in 110 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDD9"
FT                   /protein_id="CAE35612.1"
FT                   /translation="MSRIHVFPETPSLFRRLLPRLTTFILMAVCLLAAIAAVSPAQLPV
FT                   VIYKLSLISLAAVAAYWLDRALFPYARPDGYLVADWRCGNQGQFSQVDYPIVDTYRWAF
FT                   IAATLRRAIIVAGVVVGVALGL"
FT   misc_feature    complement(join(27509..27577,27692..27751,27764..27832))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BB3639 by TMHMM2.0 at aa 17-39, 44-63 and 102-124"
FT   misc_feature    complement(27758..27880)
FT                   /note="Signal peptide predicted for BB3639 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.998) with cleavage site
FT                   probability 0.426 between residues 41 and 42"
FT   CDS             complement(27989..28417)
FT                   /transl_table=11
FT                   /locus_tag="BB3640"
FT                   /product="phage-related exported protein"
FT                   /note="no significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDD8"
FT                   /protein_id="CAE35613.1"
FT                   /translation="MCKPHLIAAFFAISSLSFAAQASDSLAVKLASIDEGRQMDPGSLS
FT                   VQRANAALAEATKACGGMDARKIVDQVALVSNSLQDRGIYSRPVDILEGLKAIVYDGTD
FT                   ERTCSKVLSMYASVRLTMNHSSAVVGIRTLYNTATASQ"
FT   misc_feature    complement(28352..28417)
FT                   /note="Signal peptide predicted for BB3640 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.960 between residues 22 and 23"
FT   CDS             complement(28466..29077)
FT                   /transl_table=11
FT                   /locus_tag="BB3641"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Escherichia coli O157:H7 hypothetical
FT                   24.2 kDa protein z2968 or ecs2619 SWALL:Q8XBI0
FT                   (EMBL:AE005412) (216 aa) fasta scores: E(): 2.9e-10, 34.22%
FT                   id in 149 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDD7"
FT                   /protein_id="CAE35614.1"
FT                   /translation="MERQIFRGQVGQVTAGDIVNFNFGKPEEELSPGVDLVPAQRRALN
FT                   DLVRTITEEFDDEPWDVWRIVHAKLGVKSVQDLTRMQFELAEQVLKNHLNGRREESLLR
FT                   GLVSKVLRISAEKDNRTEVELFCSRNFGTSQFKLLTREQLQATLGFAHDWAPPKSAHDH
FT                   GPTAPLPSTMRPCPPPIERRFTWPWLAVTLFLGFIFGRLF"
FT   CDS             complement(29081..29446)
FT                   /transl_table=11
FT                   /locus_tag="BB3642"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Xanthomonas campestris phage-related
FT                   protein z2969 or xcc2997 SWALL:AAM42269 (EMBL:AE012413)
FT                   (142 aa) fasta scores: E(): 8.4e-07, 41.12% id in 124 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDD6"
FT                   /protein_id="CAE35615.1"
FT                   /translation="MGGVRKLAQINYEKGLRSPDTAYLAAIARIGVDIGYVITGRRGAA
FT                   APELTADEMVLLQHYRDAPPQVRNSALAVLLSGGHAPSVPTPSKRVKQVFHGQVGQYVD
FT                   APQEGTTIHMGGSKRKK"
FT   CDS             29623..29847
FT                   /transl_table=11
FT                   /locus_tag="BB3643"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Neisseria meningitidis hypothetical
FT                   protein Nmb1004 nmb1004 SWALL:Q9JZL2 (EMBL:AE002451) (81
FT                   aa) fasta scores: E(): 0.65, 33.33% id in 60 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDD5"
FT                   /protein_id="CAE35616.1"
FT                   /translation="MTKTRKQVREELQRKGIPLSAIARRYNFNANLLYAIINDDDVNPK
FT                   RKCRYGESHNIAVTLGLKEGQLVRQPIAA"
FT   CDS             29966..30484
FT                   /transl_table=11
FT                   /locus_tag="BB3644"
FT                   /product="phage-related hypothetical protein"
FT                   /note="no significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDD4"
FT                   /protein_id="CAE35617.1"
FT                   /translation="MDAVFPHLYWGFLEMRRNWKSVYPTSLLEALRLAKDFAREKRNFS
FT                   VERIADLMGVSHDVLYKWLATGRMPANMIPPYEHACGCTFVSRWLSTSTGKLVIDIPAG
FT                   KAATTQDMHALQAVLHDAVGKLLGFYDGSAASAEDVLAVVQRGLEGLAWHRQNVIQHES
FT                   PQLDFGAPQ"
FT   CDS             30481..30786
FT                   /transl_table=11
FT                   /locus_tag="BB3645"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Neisseria meningitidis hypothetical
FT                   protein Nmb1003 nmb1003 SWALL:Q9JZL3 (EMBL:AE002451) (98
FT                   aa) fasta scores: E(): 2.3e-10, 40.42% id in 94 aa"
FT                   /db_xref="GOA:Q7WDD3"
FT                   /db_xref="InterPro:IPR005471"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDD3"
FT                   /protein_id="CAE35618.1"
FT                   /translation="MSRTAVCSSAQRVLRIWKALRGHTLTGLSNQEIAQRASESPANVT
FT                   RGLATLMAEGLVIKYDNGRYAHGIATLQIAQAHANHCDQLTTRMAEVNQRIAAGAQ"
FT   CDS             30805..31698
FT                   /transl_table=11
FT                   /locus_tag="BB3646"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Neisseria meningitidis hypothetical
FT                   protein Nmb1002 nmb1002 SWALL:Q9JZL4 (EMBL:AE002451) (291
FT                   aa) fasta scores: E(): 1.2e-22, 34.92% id in 272 aa, and to
FT                   Salmonella typhi hypothetical protein Sty1606 sty1606
FT                   SWALL:Q8Z6W0 (EMBL:AL627270) (143 aa) fasta scores: E():
FT                   1.2e-17, 53.9% id in 141 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDD2"
FT                   /protein_id="CAE35619.1"
FT                   /translation="MARTKNIPAKDVIEPQIDGDALVAAQAAAAERSALVLKQFGDGLP
FT                   YERSRLVNEARFYMAQSAEAMLEAGKRLILMKEHEPHGDFTSIVEAQLGMSVRTAQVMM
FT                   QAAFKYLSPQLESKAQALALLGKTKLLELVTESDDELAALADGGTVAGLTLDEIDTMTS
FT                   RELKAALREARDEGKAKDQLLADKNTKLDKMQADLGGLKRRIKATSPDEQAEQLRREFT
FT                   AEAHAAEHSIRQALKDGIEKLQQHAAEAGQADTSHNTFIAASLATVRQALADLHTEFGL
FT                   AEVAVSADTPAWVDEE"
FT   misc_feature    31165..31188
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             31701..33476
FT                   /transl_table=11
FT                   /locus_tag="BB3647"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Salmonella typhi hypothetical protein
FT                   Sty1604 sty1604 SWALL:Q8Z6W2 (EMBL:AL627270) (589 aa) fasta
FT                   scores: E(): 2.3e-114, 51.36% id in 586 aa, and to Vibrio
FT                   cholerae hypothetical protein Vc1799 vc1799 SWALL:Q9KR47
FT                   (EMBL:AE004256) (585 aa) fasta scores: E(): 5.4e-48, 34.57%
FT                   id in 564 aa"
FT                   /db_xref="GOA:Q7WDD1"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDD1"
FT                   /protein_id="CAE35620.1"
FT                   /translation="MGAVLTEELSAVAQVWRAAPHGSKGEILDSACQRLGIARATLHRR
FT                   LKEIVVTEPRKRRSDAGRMALSLEDAKLISAVLMEHMRKNGKQLKSVSDAVAMLRANGL
FT                   IDATRVDAVSGEIAALSDSAILRALRQYRLHPDQLLAPAPATSMRSLYPNHVWQIDASR
FT                   CVLYYLPRQGKDNGLRIADHREFYKNKPANLVKAVNDALWRYVITDHTSSATYADYVTG
FT                   GETGENLADVFIRAMCQRAGEAMYGVPAMVMLDPGSANTGAIFRNLCQALRVRVQINQP
FT                   GNPRAKGQVEKAQDLVERSFESTLKLLASDQVDTLEKINALCARWRRWFNGTHIHTRHG
FT                   MTRDAAWLHITSDQLIIPPSAEIMRELALSDPVSRVVTTMLRVNFEGAEYNAANVPGVC
FT                   VGEKLMVCRNPWRDDSINAIGAGKDGHVVYHILERVVLDEFGQVAEAPVIGESYQRHAD
FT                   TPVQSNLKELELLATGAHNLEQAAAARKAKAVPFGGQIDPFKHIDDTRVPSAMPRRGTA
FT                   HELTAPIVQLPPLTHIQAAKQLKGRFPDWSSAHYSWLQGRYPEGIPADDLDQVAAELSA
FT                   AMRPTQAPTRTLRVA"
FT   misc_feature    32145..32744
FT                   /note="HMMPfam hit to PF00665, DE Integrase core domain,
FT                   score 3.8e-07"
FT   misc_feature    32214..32240
FT                   /note="PS00697 ATP-dependent DNA ligase AMP-binding site."
FT   CDS             33487..34671
FT                   /transl_table=11
FT                   /gene="eha"
FT                   /locus_tag="BB3648"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Salmonella typhi Eha SWALL:O87649
FT                   (EMBL:AF091717) (322 aa) fasta scores: E(): 2.1e-41, 56.19%
FT                   id in 226 aa, and to Vibrio cholerae Eha protein vc1798
FT                   SWALL:Q9KR48 (EMBL:AE004256) (383 aa) fasta scores: E():
FT                   9.1e-23, 34.66% id in 375 aa"
FT                   /db_xref="GOA:Q7WDD0"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDD0"
FT                   /protein_id="CAE35621.1"
FT                   /translation="MLKLKKILADLHVEQAELAEQMAYSQATISQLVNHSVWPKRAARW
FT                   GLRERILKFLKERGANDDQVATAFEEWTPTRGNASESGSHTPTGGTEDEAMSIRKQILH
FT                   PNTRRHFKLPGDPFEEVASAEEFYQNEHIRFTRAAMLDAAKRGGFLAVVGESGSGKTTM
FT                   RRDLQERIERESIQVQVIRPYVVAMEDNDDKGKTLKATHIAEAIMAAVAPHEVLKTSSE
FT                   ARFRQVEKALKESYRTGMRHVVLIEEAHAMPLATLRHLKRFIELEDGFTRLLSVILIGQ
FT                   TELAIKLNPKNATVREVVQRCELITLPPLGQYLEDYLKFRFARLGVQLDQMVTLDGVQA
FT                   IRSRLQPEAPRGHEERSFLYPLAVHNLLTAAMNLAAENGAPAVSADIVMEAKWN"
FT   misc_feature    33946..33969
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             34662..34982
FT                   /transl_table=11
FT                   /locus_tag="BB3649"
FT                   /product="phage-related hypothetical protein"
FT                   /note="no significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDC9"
FT                   /protein_id="CAE35622.1"
FT                   /translation="MELIICDDIQAVSSVFHQPRILTHDLVGRLAECNAAARALRAMGY
FT                   RVVEEDAAPNDGGKPVLLLDLNQQPVERLLNQCDASTRLVAAGRITGLFQGVRIIVEWT
FT                   SC"
FT   CDS             34976..35179
FT                   /transl_table=11
FT                   /locus_tag="BB3650"
FT                   /product="phage-related hypothetical protein"
FT                   /note="no significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDC8"
FT                   /protein_id="CAE35623.1"
FT                   /translation="MLKPRMQPALRGFLTCWTCAATCADFDVVVSANPCMLQCRKCASE
FT                   ARQKLVAGRLRANDSAVVLEAA"
FT   CDS             35179..35784
FT                   /transl_table=11
FT                   /locus_tag="BB3651"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Neisseria meningitidis hypothetical
FT                   protein Nma1874 nma1874 SWALL:Q9JTC5 (EMBL:AL162757) (125
FT                   aa) fasta scores: E(): 1.6e-07, 34.48% id in 116 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDC7"
FT                   /protein_id="CAE35624.1"
FT                   /translation="MPMPTFHCPACRNPLTAETVFANEAVREAILHLIEAHPDAAKLLR
FT                   PLMSYIGLFAPEKTAMRYERIAALLGEVVPMIRAGEVCRNRRTWPAPLAYWRQGLEEVV
FT                   ARGHSGALRRPLGTHGYLLEIVAGLASKDDAKREAVVEQQRAGVSGVGTAPERAAQAVT
FT                   TSDLRPPMPTDVRAQLLAAAGSKKVVTSPTPSHSKESS"
FT   CDS             35781..36401
FT                   /transl_table=11
FT                   /locus_tag="BB3652"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Neisseria meningitidis hypothetical
FT                   protein nma1871 nma1871 or rth11 SWALL:Q9JRE4
FT                   (EMBL:AL162757) (203 aa) fasta scores: E(): 5.4e-33, 52.55%
FT                   id in 196 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDC6"
FT                   /protein_id="CAE35625.1"
FT                   /translation="MSYTRTAPPGYKADGQGRLTPLTAIKPIDLLRDDLVTKIVEEAKE
FT                   ESLRLAEFKANAFKDIAAFVDISAEQYGVSLGGRKGNLTLYSFDQRYKLIRAMDETLVF
FT                   DERLQVAKALIDQCLVDWTADARPELKAIIDRAFEVDKAGNINTDRVLALRRIQSTDER
FT                   WIQAMQAISDSTMPAGSKSYIRAYERVGMTDRYEQIPLGVANV"
FT   CDS             36521..36802
FT                   /transl_table=11
FT                   /gene="hup"
FT                   /gene_synonym="hstH"
FT                   /gene_synonym="hllA"
FT                   /locus_tag="BB3653"
FT                   /product="histone-like DNA-binding protein"
FT                   /note="Similar to Streptococcus thermophilus DNA-binding
FT                   protein Hu Hup or HstH SWALL:DBH_STRTR (SWALL:P96045) (91
FT                   aa) fasta scores: E(): 6.4e-11, 48.27% id in 87 aa, and to
FT                   Lactococcus lactis HllA hllA SWALL:AAK08222 (EMBL:AF320916)
FT                   (91 aa) fasta scores: E(): 3.7e-12, 48.27% id in 87 aa"
FT                   /db_xref="GOA:Q7WDC5"
FT                   /db_xref="HSSP:1HUE"
FT                   /db_xref="InterPro:IPR000119"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDC5"
FT                   /protein_id="CAE35626.1"
FT                   /translation="MSLTKKDLIATLSYETGFSRRDTENMVDVLTSTISEQLIAGEEFT
FT                   LPGVGKFSTSQRAARTGRNPQTGEPVEIAASVAVKFSASKTLKDQVNA"
FT   misc_feature    36527..36796
FT                   /note="HMMPfam hit to PF00216, DE Bacterial DNA-binding
FT                   protein, score 6.6e-36"
FT   CDS             36899..37264
FT                   /transl_table=11
FT                   /locus_tag="BB3654"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Pseudomonas phage phiKZ phikz184
FT                   SWALL:Q8SCX8 (EMBL:AF399011) (230 aa) fasta scores: E():
FT                   0.0036, 33.04% id in 115 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDC4"
FT                   /protein_id="CAE35627.1"
FT                   /translation="MRKIHEHKVDSFNELLDVHANDERTAGGAAYHYVIEVPGAPDTNI
FT                   IFQNGDPKLVGPRGITMEALLAVLADRLRGFQGGAFPCHENANALLHVEAALAALKWRI
FT                   LRLSTDRQPADAACPNC"
FT   CDS             37344..37760
FT                   /transl_table=11
FT                   /locus_tag="BB3655"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Caenorhabditis elegans K11e8.1B protein
FT                   k11e8.1B SWALL:O62304 (EMBL:Z70279) (137 aa) fasta scores:
FT                   E(): 7.2, 27.67% id in 112 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDC3"
FT                   /protein_id="CAE35628.1"
FT                   /translation="MSRTEQALELVRARPGIRSVEIEEELGISGATTVLASAVQKGLVR
FT                   AERVQAPSGRWVAAFYPADQERTDDRDISVPRQVRTAVPSATAEGLVAALFTNGDLVLE
FT                   VGRRSIRLNADQTRRLVQYLDRINVDQIMAGVSK"
FT   CDS             37765..38355
FT                   /transl_table=11
FT                   /locus_tag="BB3656"
FT                   /product="phage-related conserved hypothetical protein"
FT                   /note="Similar to Bacteriophage Mu protein gp16 16 or e16
FT                   or gemA SWALL:VG16_BPMU (SWALL:Q38494) (183 aa) fasta
FT                   scores: E(): 4.7e-11, 32.96% id in 179 aa, and to
FT                   Salmonella typhi hypothetical protein Sty1592 sty1592
FT                   SWALL:Q8Z6X2 (EMBL:AL627270) (150 aa) fasta scores: E():
FT                   3.8e-20, 51.14% id in 131 aa"
FT                   /db_xref="InterPro:IPR009363"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDC2"
FT                   /protein_id="CAE35629.1"
FT                   /translation="MAAISPIVRLKRLAHVAKRELGMDDDSYRDALYGATGKRSTSAMS
FT                   VAELEAVMSHMKRCGFKVRLNPKPSRPLDLQAESRKIRALWILLRDLGAIQNPSEEALG
FT                   AYIKRMTGVDALQWINGQQAERVIEGLKKWALRFLPAQVSAMADDLGPRISSLDPVNQA
FT                   AVRATLNRAFARQTFDPMLKAWTLLSQVSTAGE"
FT   CDS             38357..38719
FT                   /transl_table=11
FT                   /locus_tag="BB3657"
FT                   /product="phage-related putative DNA-binding protein"
FT                   /note="Similar to Salmonella typhi putative bacteriophage
FT                   transcriptional regulator sty1591 SWALL:Q8Z6X3
FT                   (EMBL:AL627270) (129 aa) fasta scores: E(): 6.7e-07, 32.4%
FT                   id in 108 aa, and to Erwinia carotovora DNA-binding protein
FT                   RdgB rdgB SWALL:RDGB_ERWCA (SWALL:Q47588) (117 aa) fasta
FT                   scores: E(): 0.033, 25.49% id in 102 aa"
FT                   /db_xref="GOA:Q7WDC1"
FT                   /db_xref="InterPro:IPR014875"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDC1"
FT                   /protein_id="CAE35630.1"
FT                   /translation="MERPNSRMSLVRHELFSDIVTHVEALLKDLGLPAAVADQAAVSVA
FT                   DFLADHWGGQYVVIPKDYQFRVAQRDLEMYRSHKGDFSATARQWGMTERGARKVIERVT
FT                   KRLIAENQGRLFDELV"
FT   CDS             complement(38808..41312)
FT                   /transl_table=11
FT                   /gene="bfrH"
FT                   /locus_tag="BB3658"
FT                   /product="putative ferric siderophore receptor"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1138"
FT                   /db_xref="GOA:Q7WDC0"
FT                   /db_xref="HSSP:1FI1"
FT                   /db_xref="InterPro:IPR000531"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDC0"
FT                   /protein_id="CAE35631.1"
FT                   /translation="MFSRSQKHPSWRLSPCVLAAALCAVAVGSADTARAQAPAASAQHY
FT                   EIAAGPLADALTRFARRAGVVLSFDPALVQGRSTAGLQGVYGVRDGFAALLAGSGLQAR
FT                   AGGGNNWSLAALPRGGDAQTLAPVTVLGLEGALAPTVGYVASASLSGTKTDTPLIETPQ
FT                   SISVVTRDQITEQGAQTLNQVLRYTAGVATETRGATATRLDQFSVRGFSAATYLDGMRV
FT                   FGGRDALPQVDAYRLERVDVLKGPASVLYGQGGPGGVVNQVSKRPLDEPLREIEVQAGN
FT                   FDFRRVNMDFSGPVDEDRRFLYRVTGAAYMSDGQVDHTRERRYFVSPSFTWRPSADTTL
FT                   TVLTNFQRDPDMGSYGSISAMRTLLSAPDGRRLGPNHYDGDADFEKSDRRSYSLGYQLE
FT                   HRFNDTFKASQNLRFQHAEGVYRSIYGASNNNYGYLDKDYRYSQRGLAISDVDVDAFTI
FT                   DNNLQARFDTGALAHTVLVGFDYQRVQTDTLSGYGSAPPLDVFDPDYHMGIERPPFTSD
FT                   QTQYNYQTGLYLQDQIRLDRLSLLLGGRYDWSRTHTGTDNLANGSHSSSALAAEAFTGR
FT                   VGAIYNFDNGVAPYASYSESFEPQTGTGWNNTPFKPTEGKQYEVGVKYQPPGSATLLTL
FT                   AAFDIRRKNLPTTDPDPTHMCGVSRCSIQAGEVRTRGIELEAKTEPLRGLSLIAAYSYL
FT                   DNEYEKAYPNTTGLDLKGKKPVAVPAHQASAWARYQLQEGPLAGLGMGAGVRYIGSSYA
FT                   NETNTLKVPSVTLVDMMLDYDLGRASPALKGMQVALNVSNLFDKEYIGSCLSDSWCWYG
FT                   YQRSIKASLLKRSEITTGERLR"
FT   misc_feature    complement(38838..39176)
FT                   /note="HMMPfam hit to PF00593, DE TonB dependent receptor
FT                   C-terminal region, score 3.1e-14"
FT   misc_feature    complement(41226..41312)
FT                   /note="Signal peptide predicted for BB3658 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.360 between residues 29 and 30"
FT   CDS             complement(41406..42368)
FT                   /transl_table=11
FT                   /gene="fecR"
FT                   /locus_tag="BB3659"
FT                   /product="putative signal transduction protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1137"
FT                   /db_xref="InterPro:IPR017909"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDB9"
FT                   /protein_id="CAE35632.1"
FT                   /translation="MSRPAAPDAVAQQAIAWWVRLQSGCAAAAEHEACRAWLARDKAHQ
FT                   RAWDRVATLAAGIRRAPAAPALAILPDLASRGPSRRQALRLLAGLGVGAAAGAGAYSWA
FT                   PWQRLVADASTGVGERRQIVPGPGVRLVLASDSAVRLRIDATRRAIALLRGEMLVDVHS
FT                   GAAQPALQVDTGYGMALAEQARFGVCRAGGSARIGVYAGSVQVASAPHAPWHRGEAGES
FT                   LRLDGAGVPRRGRVAADESAWEDGLLVVHGWRLDRLAAQLARYRLGVIRVDPAVAGLRL
FT                   SGVFPLDDAERALAAVRQSLPIEIRRHTAYWLSVTPRAA"
FT   CDS             complement(42361..42894)
FT                   /transl_table=11
FT                   /gene="fecI"
FT                   /locus_tag="BB3660"
FT                   /product="ECF-family sigma factor"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1136"
FT                   /db_xref="GOA:Q7WDB8"
FT                   /db_xref="InterPro:IPR007627"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDB8"
FT                   /protein_id="CAE35633.1"
FT                   /translation="MPASLITSPSARPAADTAAVEGLYRQHRSWLAGWLRRRLGCPHRA
FT                   EDLTQDVFVRVIQGRKAVRMEQARALLATIAKGLVIDHQRRAALEHAYLEYLAAQPSGH
FT                   APSPQQQAELLQALVELDRLLEGLPPRARAVFLMSQLEGLGYAEIAQRLRISLSSVQQY
FT                   MLRAMSACYMAFHE"
FT   misc_feature    complement(42634..42798)
FT                   /note="HMMPfam hit to PF00776, , score 0.00014"
FT   CDS             43154..44002
FT                   /transl_table=11
FT                   /gene="tauD"
FT                   /gene_synonym="ssiD"
FT                   /locus_tag="BB3661"
FT                   /product="alpha-ketoglutarate-dependent taurine
FT                   dioxygenase"
FT                   /EC_number="1.14.11.17"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1135"
FT                   /db_xref="GOA:Q7WDB7"
FT                   /db_xref="HSSP:1GY9"
FT                   /db_xref="InterPro:IPR003819"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDB7"
FT                   /protein_id="CAE35634.1"
FT                   /translation="MNTQTALEVRPLTGSCGAELFGVDLSQALSADTVKAIRQALLDHN
FT                   VIFFREQTLTPEQHRAFTRQFGEVVVNPVYTHVEGYPDIMPVIKEPNDRYNIGDTWHSD
FT                   MSYMQEPPLGSVLYGRDIPEYGGDTLFANMYLAYDLLPEALRQMIDGRQAYHSDRYLTS
FT                   RISERNAGRSTRLKADADAKENLALHPMVRTHEETGRKCLYVNFPFTWQIEGLSREESL
FT                   PLLHQLYAHAARPEFACRFRWRKGSLAFWDNRCTMHYACNDYQGKRREMHRMTIAGGRP
FT                   Q"
FT   misc_feature    43172..43996
FT                   /note="HMMPfam hit to PF02668, DE Taurine catabolism
FT                   dioxygenase TauD, TfdA family, score 4.3e-71"
FT   CDS             43999..44721
FT                   /transl_table=11
FT                   /locus_tag="BB3662"
FT                   /product="probable short-chain dehydrogenase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1132"
FT                   /db_xref="GOA:Q7WDB6"
FT                   /db_xref="HSSP:1Q7B"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDB6"
FT                   /protein_id="CAE35635.1"
FT                   /translation="MTRAQGYTLITGATRGIGRAIADLLAARGEPVMGIARSGDAGFPG
FT                   PLLQADLLDAAQRREVLREAASHGVLRLVNNAGFNQMQPLGEITDAATSAILELNIAVA
FT                   IDAAQAVLPGMTEAGAGRIVNIASRSLLARPGGSVYSAAKAAMVGLTRSWALELATRGI
FT                   TVNCVAPGPVATEMFQRNNPPELARSRALVEAIPVARLGTPEEIAHAVDYFLAPHAAYT
FT                   TGQTLFVCGGASISQIKL"
FT   misc_feature    44008..44697
FT                   /note="HMMPfam hit to PF00106, DE short chain
FT                   dehydrogenase, score 2.2e-46"
FT   misc_feature    44377..44463
FT                   /note="PS00061 Short-chain dehydrogenases/reductases family
FT                   signature."
FT   CDS             44776..45759
FT                   /transl_table=11
FT                   /locus_tag="BB3663"
FT                   /product="putattive exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1131"
FT                   /db_xref="GOA:Q7WDB5"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDB5"
FT                   /protein_id="CAE35636.1"
FT                   /translation="MTFITLRAQACLAALLALAGASGAMAAGYPAQPIRLIVPYAAGGT
FT                   TDLIARLVGQHMGTKLGQPVIVENKAGAGGNIGTEQVSRATPDGYTLLLGTAGNMTVNQ
FT                   AIYKDMAFDPNKDFQPISLIATLPNLMVVNKAVPAQTTKEFVAWAKENPKTVFFASSGV
FT                   GSTTHLTGELFNMATGLHMEHVPYKGSGPALIDLVGGTGPVVMFDNMPSAIALVRDGSL
FT                   RALAVTGPDRESSAKDIPTVKESGYPDFDVVTWFGLFAPAGTPADVVQKLNKTVQEVVH
FT                   SPQVSKRLSELGATPKTNSPQEYATIMKDDTAKWAKVVKTANIVKP"
FT   misc_feature    44776..44853
FT                   /note="Signal peptide predicted for BB3663 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.995 between residues 26 and 27"
FT   misc_feature    44920..45747
FT                   /note="HMMPfam hit to PF03401, DE Uncharacterized protein
FT                   family, UPF0065, score 2.8e-115"
FT   CDS             complement(45787..46689)
FT                   /transl_table=11
FT                   /locus_tag="BB3664"
FT                   /product="LysR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1129"
FT                   /db_xref="GOA:Q7WDB4"
FT                   /db_xref="HSSP:1IXC"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDB4"
FT                   /protein_id="CAE35637.1"
FT                   /translation="MELRHLRYFLMLAETLHFGRAASRLGIAQPPLSRQIRDLEEQVGA
FT                   TLFYRGTRGVSLTDAGVAFAQRAAQIVAAADEAVFEAREAGQGRTGRIVIGFVHSLAYS
FT                   LLPRVLPGFRQKHPGIAVSLREVTVADKESALLSGQIDTGIYRPTVRHPEIATLPIFEE
FT                   GFVLALPSGHPLARKRRVSVHSLRDQPLILFRALRGDVGLHGTIAAFLRAHDVPVKACE
FT                   EVGTIHAGMGLVLAGVGVCIIPETSRMVHIEGVVTRPFAEATTRVSSTVCWRHQDSSRS
FT                   LDAWVRHVRELIRTGESAG"
FT   misc_feature    complement(45808..46434)
FT                   /note="HMMPfam hit to PF03466, DE LysR substrate binding
FT                   domain, score 4e-43"
FT   misc_feature    complement(46504..46683)
FT                   /note="HMMPfam hit to PF00126, DE Bacterial regulatory
FT                   helix-turn-helix protein, lysR family, score 4.6e-28"
FT   misc_feature    complement(46549..46641)
FT                   /note="PS00044 Bacterial regulatory proteins, lysR family
FT                   signature."
FT   CDS             46777..47535
FT                   /transl_table=11
FT                   /gene="fabG"
FT                   /locus_tag="BB3665"
FT                   /product="3-oxoacyl-[acyl-carrier protein] reductase"
FT                   /EC_number="1.1.1.100"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1128"
FT                   /db_xref="GOA:Q7WDB3"
FT                   /db_xref="HSSP:1Q7B"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDB3"
FT                   /protein_id="CAE35638.1"
FT                   /translation="MTAANRTALVTGAARGIGLAIATRLAQDGHPVIMLDASPDVQASA
FT                   RALAGRGLRAHGMRLDIADEQAVRDLPRRCGQWWENLAIVVNNAGISPKHEGRKRKVAD
FT                   MPLDEWRRVLDVNLTGTFLVTQTCLPALIAAGWGRIIMITSQAARTRTPVPGAHYSATK
FT                   SGMTGLARVLAGEVAEHGITVNCVAPGRIQSAMTAEVGGAVNASHSATVPLGRLGLPEE
FT                   VAATVAFLASDGAGYTTGATIDVNGGSFML"
FT   misc_feature    46777..46854
FT                   /note="Signal peptide predicted for BB3665 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.788) with cleavage site
FT                   probability 0.743 between residues 26 and 27"
FT   misc_feature    46786..47523
FT                   /note="HMMPfam hit to PF00106, DE short chain
FT                   dehydrogenase, score 2e-70"
FT   CDS             complement(47548..48696)
FT                   /transl_table=11
FT                   /locus_tag="BB3666"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1127"
FT                   /db_xref="GOA:Q7WDB2"
FT                   /db_xref="InterPro:IPR005654"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDB2"
FT                   /protein_id="CAE35639.1"
FT                   /translation="MAWGGLCNPPLCFGFSGCDMNVREYYEHALAERGYQPDEAQLQAV
FT                   ERLQRYYDEWVRFKALRSNALKKLLNRPDVPRGVYLWGGVGRGKSFLMDAFYATVPVVR
FT                   KTRLHFHEFMRGVHRELEEVKGTQDPLDEVARRLARRYRLICFDEFHVSDVADAMILYR
FT                   LLLKLFEHGTSFVMTSNYEPSTLYPDGLHRDRILPAIALIQGRMDVLNVDAGIDYRRRS
FT                   LEQVQCYHTPLDAQARQALEHAFAQLSDTAPQDPVLHIEHREIRAQALAGSVVWFDFAT
FT                   LCGGPRSQNDYLELANRFHAVILSDVPRMGPRQASEARRFTWLIDVFYDHKVKLIMSAE
FT                   VEPEQLYTEGALANEFHRTVSRILEMQSREYLEAERRLAVTL"
FT   misc_feature    complement(47572..48615)
FT                   /note="HMMPfam hit to PF03969, DE AFG1-like ATPase, score
FT                   2.7e-138"
FT   misc_feature    complement(48427..48450)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    complement(48643..48675)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(48737..50164)
FT                   /transl_table=11
FT                   /gene="odhL"
FT                   /locus_tag="BB3667"
FT                   /product="2-oxoglutarate dehydrogenase complex, E3
FT                   component"
FT                   /EC_number="1.8.1.4"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1126"
FT                   /db_xref="GOA:Q7WDB1"
FT                   /db_xref="HSSP:1DXL"
FT                   /db_xref="InterPro:IPR006258"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDB1"
FT                   /protein_id="CAE35640.1"
FT                   /translation="MSKQFDVVVIGAGPGGYIAAIRAAQLGMSVACIDAWQNGQGGPAP
FT                   GGTCTNVGCIPSKALLQSSEHYEQANHHFAEHGIEVKGVSLKLDTLIGRKNTVVKQNND
FT                   GILYLFKKNKVTYFHGKGAFAGQVDGGWSIKVTGTTDADLVAKHVIVATGSSARELPGL
FT                   PFDEKNILSNDGALNIGAVPKKLGVIGAGVIGLEMGSVWRRLGAEVTILEAMPEFLAAA
FT                   DQQVAKEALKSFAKQGLDIQTGVKIGEIKAAAKSITVPYVDAKGAEQKLVVDKLIVSIG
FT                   RVPYTGGLNAEAVGLKLDERGFVAVDEDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAV
FT                   AERIAGQHGHVNFATVPWVIYTSPEIAWVGKTEQQLKAEGREYKAGSFPFMANGRARAL
FT                   GDTTGFAKVIADAKTDEVLGVHIIGPMASELISEAVTIMEFRGAAEDIARICHAHPTLS
FT                   EAVKEAALAVDKRTLNF"
FT   misc_feature    complement(48770..49099)
FT                   /note="HMMPfam hit to PF02852, DE Pyridine
FT                   nucleotide-disulphide oxidoreductase, dimerisation domain,
FT                   score 4.4e-59"
FT   misc_feature    complement(49169..50149)
FT                   /note="HMMPfam hit to PF00070, DE Pyridine
FT                   nucleotide-disulphide oxidoreductase, score 3.3e-92"
FT   CDS             complement(50394..51614)
FT                   /transl_table=11
FT                   /gene="odhB"
FT                   /gene_synonym="sucB"
FT                   /locus_tag="BB3668"
FT                   /product="dihydrolipoamide succinyltransferase component of
FT                   2-oxoglutarate dehydrogenase complex"
FT                   /product="2-oxoglutarate dehydrogenase complex, E2
FT                   component"
FT                   /EC_number="2.3.1.61"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1125"
FT                   /db_xref="GOA:Q7WDB0"
FT                   /db_xref="HSSP:1C4T"
FT                   /db_xref="InterPro:IPR003016"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDB0"
FT                   /protein_id="CAE35641.1"
FT                   /translation="MAITDVLVPQLSESVSEATLLTWKKQAGAAVEADEILIEIETDKV
FT                   VLEVPAPSSGVLSEIVMGDGSTVTSGEVIARIDTAAKAAAAPAAAAEAPAAAAAAAPAA
FT                   AAPAAASSTASGVASPAAAKILAEKGVDAASVAGTGRDGRVTKGDALAAGNAPAAKAAA
FT                   PVAPPTLSLDGRPEQRVPMSRLRARIAERLLQSQAENAILTTFNEVNMQAVMDLRARYK
FT                   DKFEKEHGVKLGFMSFFVKAAVAALKKYPVLNASVDGKDIIYHGYFDIGIAVGTPRGLV
FT                   VPILRNADQLTIAEIEKTIADFGKRAADGKLGIEEMTGGTFSISNGGVFGSMLSTPIIN
FT                   PPQAAILGIHATKERPVVENGQIVIRPINYLAMSYDHRIIDGREAVLGLVAMKEALEDP
FT                   QRLLLDL"
FT   misc_feature    complement(50403..51095)
FT                   /note="HMMPfam hit to PF00198, DE 2-oxo acid dehydrogenases
FT                   acyltransferase (catalytic domain), score 1.1e-138"
FT   misc_feature    complement(51153..51269)
FT                   /note="HMMPfam hit to PF02817, DE e3 binding domain, score
FT                   5.1e-12"
FT   misc_feature    complement(51384..51605)
FT                   /note="HMMPfam hit to PF00364, DE Biotin-requiring enzyme,
FT                   score 5.7e-23"
FT   misc_feature    complement(51444..51533)
FT                   /note="PS00189 2-oxo acid dehydrogenases acyltransferase
FT                   component lipoyl binding site."
FT   CDS             complement(51660..54530)
FT                   /transl_table=11
FT                   /gene="odhA"
FT                   /gene_synonym="sucA"
FT                   /locus_tag="BB3669"
FT                   /product="2-oxoglutarate dehydrogenase E1 component"
FT                   /EC_number="1.2.4.2"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1124"
FT                   /db_xref="GOA:Q7WDA9"
FT                   /db_xref="InterPro:IPR011603"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDA9"
FT                   /protein_id="CAE35642.1"
FT                   /translation="MSTESESLSTSYLFGGNAPYVEELYESYLDNPGSVPDNWREYFDQ
FT                   LQHSPATDGQEATRDQAHAPIVESFAQRARANAFVQRVAEPDLSVASKQVSVQSLIAAY
FT                   RSLGSRWADLDPLKRQERPAIPELDPAFYGLTEADLDQVYSATNTYFTTASTMTLRDIL
FT                   KALRDTYCRSVGAEFMHISDPAAKRWIQQRLESTFSAPVFSTEEKRHILQQLTESEGLE
FT                   RFLHTKYVGQKRFSLEGGESFIASMDEVVNHAGESGVQEIVVGMAHRGRLNLLVNIMGK
FT                   MPGDLFAEFEGKHAEGLTDGDVKYHNGFSSDLSTRGGPVHLSLAFNPSHLEIVNPVVEG
FT                   SVRARQERRGDGEGKQVLPVLVHGDAAFAGQGVVMETLNLAQTRGYGTGGTLHIVINNQ
FT                   IGFTTSDPRDSRSTLYCTDVVKMIEAPVFHVNGDDPEAVVFATRLALDYRMQFRHDVVL
FT                   DIVCFRKLGHNEQDTPSLTQPLMYKRIGHHPGTRKLYADKLTTQGVLAEGDADQLVKDY
FT                   RQLMEDGQRTIEPVLTDYKSKYAIDWSPFLGAKWTDQADTAVPLAELKRIGERITTVPE
FT                   GFTVHPLVAKLLNDRRNMAKGEVNLDWGMGEHLAFATLVASGYAVRITGQDSGRGTFTH
FT                   RHAVLHDQNRERWNDGFYVPLQNVSEGQAPFTVIDSVLSEEAVLAFEYGYSSAEPNTLT
FT                   IWEAQFGDFVNGAQVVIDQFITAGEAKWGRQSGLTLMLPHGYEGQGPEHSSGRIERFLQ
FT                   LCADHNIQVVQPTSAAQIFHLLRRQMIRPFRKPLVIFTPKSLLRNKDAGSPLTDLAGGS
FT                   FRPVIGEVDESIKAASVKRVLACSGKVYYDLVNARRERGADHVAIVRVEQLYPFAHKAF
FT                   ETELRKYPKATEVIWVQDEPQNQGPWFYVQHHLYENMADGQKLGYAGRAASASPAVGYL
FT                   AKHQEQQKALIEQAFAAKYKGFMLTK"
FT   misc_feature    complement(51831..51860)
FT                   /note="PS00904 Protein prenyltransferases alpha subunit
FT                   repeat signature."
FT   misc_feature    complement(52134..52733)
FT                   /note="HMMPfam hit to PF02779, DE Transketolase, pyridine
FT                   binding domain, score 6.2e-69"
FT   misc_feature    complement(52932..53894)
FT                   /note="HMMPfam hit to PF00676, DE Dehydrogenase E1
FT                   component, score 3.3e-31"
FT   CDS             complement(54855..56936)
FT                   /transl_table=11
FT                   /locus_tag="BB3670"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1123"
FT                   /db_xref="InterPro:IPR004813"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDA8"
FT                   /protein_id="CAE35643.1"
FT                   /translation="MRVFPLCSGSLMADATRIPDSVTLPELTLRGVLLGALITVIFTAS
FT                   NVFLGLKVGLTFSSAIPAAVISMSVLRMFRDANILENNMVQTQASAAGTLSAIIFILPA
FT                   LVMMGHWQGFPFWQTLAICGAGGMLGVMFTIPLRHIMVVQSDLPYPEGVAAAEILRVGS
FT                   AEAPDTAPGRRGASGMGDILAGGGVAALVSLATGGLRVLGDSFSWWGQLGASVFRLPMG
FT                   FSLALLGAGYLIGIVAGVAMLVGLLIAWLVAVPVLTATTPMPDGQSISAFANSLWASQV
FT                   RFIGAGVIGVGAIWTLATLFMPMVRGVRTSFAAFGRSGEAAYGSAPRTERDLPSRWISL
FT                   ITLALVAVLVGVFAAFLQPAMLSPGARWGLVAYAVVFAFVFGFLVAAACGYMAGLIGSS
FT                   TSPISGVGIVAIVLVSLLMLAIQRGDGLLATPQGLQMGIALAIFTTSAVVAVASISNDN
FT                   LQDLKTGWLVGATPWRQQVALLIGCVVGAAVISPVLELLYNAYGFGDALPRPGMDPSQA
FT                   LAAPQATLMLAIAQGIFTHQLNWTMILIGMGVGVALIVIDQVLRRTCRVARLPVLAVGI
FT                   GIYLPPSASAPIVVGAVLAWLLEGALRRRAAAAGQDYERYAEGPNRRGVLVASGLIVGE
FT                   SLVGVLLAAVIGATGDEAPLAVVGAGFGPTAEWLGFVVFAAVAVWIYRRVVRTRPEQA"
FT   misc_feature    complement(join(54900..54968,54996..55064,55143..55211,
FT                   55254..55313,55332..55385,55443..55511,55572..55631,
FT                   55674..55730,55749..55817,55860..55928,56022..56090,
FT                   56148..56216,56229..56297,56340..56393,56526..56594,
FT                   56604..56672,56730..56798,56808..56876))
FT                   /note="18 probable transmembrane helices predicted for
FT                   BB3670 by TMHMM2.0 at aa 21-43, 47-69, 89-111, 115-137,
FT                   182-199, 214-236, 241-263, 283-305, 337-359, 374-396,
FT                   403-421, 436-455, 476-498, 518-535, 542-561, 576-598,
FT                   625-647 and 657-679"
FT   CDS             complement(56939..57490)
FT                   /transl_table=11
FT                   /locus_tag="BB3671"
FT                   /product="AsnC-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1122"
FT                   /db_xref="GOA:Q7WDA7"
FT                   /db_xref="HSSP:1I1G"
FT                   /db_xref="InterPro:IPR019888"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDA7"
FT                   /protein_id="CAE35644.1"
FT                   /translation="MRQNADSLGMKCCDRYFMELNMPPHALDAIDRRILDLLQTDASLT
FT                   NVELARRVHLSPSPCLARVKALEAAGIIRGYVALADPAQLGLNLNVFIQVSLEKQVESE
FT                   LERFQGAMADCPEVMECYLMTGDADYLLRVVVADMPGLERFIVNRLSRIPGVKNIRSGF
FT                   ALKQVKYQTALPLRQGSGPQ"
FT   misc_feature    complement(57029..57340)
FT                   /note="HMMPfam hit to PF01037, DE AsnC family, score
FT                   2.8e-45"
FT   CDS             57550..60246
FT                   /transl_table=11
FT                   /gene="aceE"
FT                   /locus_tag="BB3672"
FT                   /product="pyruvate dehydrogenase E1 component"
FT                   /EC_number="1.2.4.1"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1121"
FT                   /db_xref="GOA:Q7WDA6"
FT                   /db_xref="InterPro:IPR004660"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDA6"
FT                   /protein_id="CAE35645.1"
FT                   /translation="MCNAQAGATPPQIPDPDPVETAEWREALDSLTQAGGPERAAYVLQ
FT                   QLLARATALGVRAPGITRTAYLNTIAADQEPPFPGNLSLEERIASINRWNALAMVVRAN
FT                   QAHGELGGHIASYASAADLFEVGFNHFFRAPAPGFGGDLVYMQPHSAPGIYARAYLEGF
FT                   LNDVDLAHFRQEITAGAQGLRGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRY
FT                   LEHRSLAMPSDRKVWGIFGDGEMDEPESIAALTLAARERLDNLVFVINCNLQRLDGPVR
FT                   GNGRIIDELETLYAGAGWNVIKLVWGGDWDALLRRDPDGVLAGTFSHTVDGQFQTFAAN
FT                   DGAYNRQHFFGQDPRLSALVADWSDEAIDRLRRGGHDMVKIHAAYHRATHHRGQPTVIL
FT                   AQTKKGFGMGTAGQGKMTTHQQKKLDDEALLAFRDRFALPISDADCLALKFYKPAEDSA
FT                   ELRYLESRRAALGGYLPRRRTEAPRLAPPPVADWARFALQAAGKEMSSTMAIVRMLTAL
FT                   LKDPQLGPRIVPIVADEARTFGMANLFRQVGIYSAQGQLYEPEDIGSVLAYREARDGQI
FT                   LEEGITEAGAISSWTAAGTSYSVNGLPMLPFYIYYSMFGFQRIGDLIWAAADQRTRGFL
FT                   IGATSGRTTLGGEGLQHQDGYSHLAAAAVPNCRAYDPAYAYEVAVLVEHGMQRMLDEQC
FT                   DEFYYLTVTNENLAQPDMPEGEETRTGILRGMHRVRAADATPQVRLLGAGPMLDEAMRA
FT                   AQLLRDEHGVDAEVWSVTSFSELARGGRGAERAQALGLPCPDGNWLAQCLGDQATPVVA
FT                   VSDYVRAVPEQIRAWVPGPYRVLGTDGFGRSDTRARLRDFFEVGAPWIVLHALDLLARE
FT                   DSAWQPALQARREQLQAATRNVPSWQS"
FT   CDS             60376..62682
FT                   /transl_table=11
FT                   /gene="maeB"
FT                   /locus_tag="BB3673"
FT                   /product="NADP-dependent malic enzyme"
FT                   /EC_number="1.1.1.40"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1120"
FT                   /db_xref="GOA:Q7WDA5"
FT                   /db_xref="InterPro:IPR002505"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDA5"
FT                   /protein_id="CAE35646.1"
FT                   /translation="MRRKGCAPMDENLTKLALDYHAYPTPGKISVTPTKTLANQDDLSL
FT                   AYSPGVAAACMAIFDQGNDAASKYTSRSNLVGVITNGTAVLGLGNIGPLAAKPVMEGKG
FT                   CLFKKFAGIDVFDIELAENDPDKLVDIIAALEPTLGGVNLEDIKAPECFYIEKKLRERM
FT                   NIPVFHDDQHGTAIISSAAILNGLKVVGKDIGQVKLACSGAGAAAIACLDLLVHLGIKR
FT                   EHIYVVDSRGVIWEGRDENMEPNKRRYAQKTEARTLADVVNGADVFLGCSTAGVLTPEM
FT                   VKTMAAQPLILALANPEPEIRPELAKAARPDCIVATGRSDYPNQVNNVLCFPFIFRGAL
FT                   DAGATRITEEMKLACVKAIAELAQAEQNDEVARAYAGQELSFGPDYIIPKPFDPRLIVQ
FT                   IAPAVAQAAADSGVATRPIEDIEAYRQKLMGFVYHSGQLMRPLFQQAKQAPKRVVYADG
FT                   EDERVLRAVQTVIDEKLAEPILVGRPSVIEMRIKKFGLRMVPGQNVEIVDPEDDSRFND
FT                   TWNGYYQLRGREGVTPAIAKAMIRKHNTLIGAMLLRRGDADALLCGVASKYDNQLKYVE
FT                   EVIGRKPGQTYGALNVLMLPNQTLFVTDTHVNENPSADEIANITIQAAEEMLRFGVMPK
FT                   IALLSHSNFGSRPTDSSRKMAHARKLVAERAPHLEVDGEMHADAALSESIRLQAYPDST
FT                   LKGRANLLVMPNLDTGNITYNMLKMTGSNGIAMGPILLGSARPVHILTTSATVRRIVNM
FT                   TALAVVDAQQEAAEG"
FT   misc_feature    60451..60885
FT                   /note="HMMPfam hit to PF00390, DE Malic enzyme, N-terminal
FT                   domain, score 2.6e-72"
FT   misc_feature    60889..61602
FT                   /note="HMMPfam hit to PF03949, DE Malic enzyme, NAD binding
FT                   domain, score 3e-127"
FT   misc_feature    61684..62649
FT                   /note="HMMPfam hit to PF01515, DE Phosphate acetyl/butaryl
FT                   transferase, score 1e-116"
FT   CDS             62857..63492
FT                   /transl_table=11
FT                   /gene="fim2"
FT                   /locus_tag="BB3674"
FT                   /product="serotype 2 fimbrial subunit precursor"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1119"
FT                   /db_xref="GOA:Q7WDA4"
FT                   /db_xref="InterPro:IPR014779"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDA4"
FT                   /protein_id="CAE35647.1"
FT                   /translation="MLPMQVPFQRALRLCLRAALAAIASAAHADDGTIVITGTITDTTC
FT                   VIEDPAGPTHTKVVQLPKISKSALAKDGDEAGRTPFLITLKDCPSSLNNGVKAYFEPGP
FT                   TTDYATGDLKAYSIAYNNNPATTQNAIIAASEAQGVQIRISNQNGTKIPMGVDAAAQNA
FT                   QAFNPVTDTADNAKKKVTLRYLASYVKKSGNITAGQLTTYVGFSMIYP"
FT   misc_feature    62857..62943
FT                   /note="Signal peptide predicted for BB3674 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 1.000 between residues 29 and 30"
FT   misc_feature    62950..63486
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF00419, DE Fimbrial protein, score
FT                   8.4e-15"
FT   CDS             63603..64055
FT                   /transl_table=11
FT                   /locus_tag="BB3675"
FT                   /product="putative inner membrane protein"
FT                   /db_xref="InterPro:IPR018706"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDA3"
FT                   /protein_id="CAE35648.1"
FT                   /translation="MLQDALLAWLHYLAIFVLIVLMTAEAVLLRPGMSARSVGRLALYD
FT                   RLYLASALAVLATGVLRLTLGAKGAAFYMANPWFHAKIGLFVLIALCSIPPTLAFLSWK
FT                   KQSLSQPGFTPADADIRRARRWVMIESHLFIFLPLFAVLMARGIGI"
FT   misc_feature    join(63615..63683,63741..63800,63843..63911,63978..64046)
FT                   /note="4 probable transmembrane helices predicted for
FT                   BB3675 by TMHMM2.0 at aa 5-27, 47-66, 81-103 and 126-148"
FT   CDS             complement(64071..65222)
FT                   /transl_table=11
FT                   /locus_tag="BB3676"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2356"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDA2"
FT                   /protein_id="CAE35649.1"
FT                   /translation="MPAHLYGRLRYHPPMIPVALPSLSFVLLLLASALGALALLGWSAA
FT                   LAFSGRARRAFGRRRLACGGLYAVLLVLAGYFAYFQGVAAYVRYEIEREWRTRHYTLPE
FT                   AARVGGIDMPAGTRLSLEVAHSPDTYNRAEFPHPVSAHGLQALRIERYIALDHEPDTYK
FT                   LTEAYPLTMRVTGPGTQAIQGWRCDAASPMHFSTRRDGRIAAFEECMLAEGNRADGMEV
FT                   PPGARLLAHEGTVYTDGHVDPDRWQVWLEPDMAVRIGGVWLAGAIIRLDAERRYDAFEQ
FT                   AELACPLAFGPMHYPAGTEVRSAGRGWRERHPGAWIFSPLAGASARYAGHPDVADGQAV
FT                   VQGRGGEVLAVVPNNEAGVLRFAAIAVGGNDAAAPRRAACPPR"
FT   misc_feature    complement(join(64968..65036,65097..65165))
FT                   /note="2 probable transmembrane helices predicted for
FT                   BB3676 by TMHMM2.0 at aa 20-42 and 63-85"
FT   misc_feature    complement(65082..65222)
FT                   /note="Signal peptide predicted for BB3676 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.982) with cleavage site
FT                   probability 0.540 between residues 47 and 48"
FT   CDS             complement(65272..66582)
FT                   /transl_table=11
FT                   /gene="gltA"
FT                   /gene_synonym="gluT"
FT                   /gene_synonym="icdB"
FT                   /locus_tag="BB3677"
FT                   /product="citrate synthase"
FT                   /EC_number="2.3.3.1"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2358"
FT                   /db_xref="GOA:Q7WDA1"
FT                   /db_xref="HSSP:1K3P"
FT                   /db_xref="InterPro:IPR019810"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDA1"
FT                   /protein_id="CAE35650.1"
FT                   /translation="MNLSDKKATLSFSDGSAPIEFPVYKGTVGPDVIDIRKLYGQTGMF
FT                   TFDPGFMSTAACASGITYIDGDKGELLYRGYPIEQLAVNCDFLDICYLILNGELPNGGQ
FT                   KQDFDSQVTHHTMVNEQLHFFLRGFRRDAHPMAVLTGLVGALSAFYHDSTDITNPHHRH
FT                   VSAIRLIAKMPTLVAMAYKYSQGQPFIYPQNDLSYTGNFLRMMFATPCEEYKVNDVVER
FT                   ALDRIFILHADHEQNASTSTVRLCGSSGTNPFAAIAAGVACLWGPAHGGANEACLQMLE
FT                   ELQANGGVAKVGEFMEKVKDKNSGVRLMGFGHRVYKNYDPRAKLMQETCKEVLVALGLE
FT                   NDPLFKLAMELERIALEDDYFVQRKLYPNVDFYSGIVQRAIGIPTSLFTAIFALARTVG
FT                   WIAQWNEMLSDPDYKIGRPRQLFTGSVTRDVPGMDKR"
FT   misc_feature    complement(65329..66435)
FT                   /note="HMMPfam hit to PF00285, DE Citrate synthase, score
FT                   2.2e-209"
FT   misc_feature    complement(65617..65655)
FT                   /note="PS00480 Citrate synthase signature."
FT   CDS             complement(66603..66863)
FT                   /transl_table=11
FT                   /locus_tag="BB3678"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2359"
FT                   /db_xref="InterPro:IPR005631"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WDA0"
FT                   /protein_id="CAE35651.1"
FT                   /translation="MSRLTELQRARLRWRARRGLLENDLIITRYLDACEDQLTDEDVTA
FT                   LTQLFELGDNDLLDLLLARKEPEGALDTPRLRAIIDRMREL"
FT   misc_feature    complement(66609..66854)
FT                   /note="HMMPfam hit to PF03937, DE Domain of unknown
FT                   function (DUF339), score 1.3e-05"
FT   CDS             complement(66889..67605)
FT                   /transl_table=11
FT                   /gene="sdhB"
FT                   /locus_tag="BB3679"
FT                   /product="succinate dehydrogenase iron-sulfur protein"
FT                   /EC_number="1.3.99.1"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2360"
FT                   /db_xref="GOA:Q7WD99"
FT                   /db_xref="HSSP:1KF6"
FT                   /db_xref="InterPro:IPR004489"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD99"
FT                   /protein_id="CAE35652.1"
FT                   /translation="MSTKRIVKFEIYRYDPDKDERPYMQKLEVELQPTDKMLLDALVRI
FT                   KNDVDDSLALRRSCREGVCGSDAMNINGKNGLACTTNLLELKEPIVLKPLPGLPVIRDL
FT                   IVDMTHFFNQYHSIRPYLINDTPPPEKERLQSPEAREELDGLYECILCACCSTSCPSFW
FT                   WNPDKFVGPAGLLQAYRFIADSRDEATGARLDNLEDPYRLFRCHTIMNCVDVCPKGLNP
FT                   TKAIGKIKELMVRRTV"
FT   misc_feature    complement(67126..67161)
FT                   /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding
FT                   region signature."
FT   misc_feature    complement(67351..67542)
FT                   /note="HMMPfam hit to PF00111, DE 2Fe-2S iron-sulfur
FT                   cluster binding domain, score 0.18"
FT   CDS             complement(67618..69396)
FT                   /transl_table=11
FT                   /gene="sdhA"
FT                   /locus_tag="BB3680"
FT                   /product="succinate dehydrogenase flavoprotein subunit"
FT                   /EC_number="1.3.99.1"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2361"
FT                   /db_xref="GOA:Q7WD98"
FT                   /db_xref="HSSP:1CHU"
FT                   /db_xref="InterPro:IPR011281"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD98"
FT                   /protein_id="CAE35653.1"
FT                   /translation="MVAVMNSLPRRQFDVVVVGAGGAGMRCSLQLAQAGLSVAVLSKVF
FT                   PTRSHTVAAQGGVSASLGNMSEDNWYWHMYDTVKGSDWLGDQDAIEFMCREAPNAVYEL
FT                   EHFGMPFDRNADGTIYQRPFGGHTANFGEKPVQRACAAADRTGHALLHTLYQRNVAART
FT                   QFFVEWMALDLLRNEAGDVLGVTALEMETGEIYVLEAKTTVLATGGAGRIWAASTNAFI
FT                   NTGDGLGMAARAGIPLQDMEFWQFHPTGVAGAGVLITEGVRGEGGILLNKDGERFMERY
FT                   APTLKDLAPRDFVSRSMDQEIKEGRGCGPDGSYVVLKLDHLGADVINKRLPSIREIAIK
FT                   FGNVDPIKEPIPVVPTIHYQMGGIPANYHGQVLERANGENKIVNGLYAIGECAAVSVHG
FT                   ANRLGTNSLLDLIVFGRATGNHIVDSHPERQHAHQPLPKEAVDRSLARVDELESRTSGE
FT                   KTQDVANAIRMSMQRHCGVFRTLELLNEGVGQIEDLAQTAQHIYFKDKSKVFNTARVEA
FT                   LELANMTEVARATIKSAANRTESRGAHALNDHPERDDVNWLKHTLWYSEGSRLDYKPVQ
FT                   MKPLTVESFPPKARTF"
FT   misc_feature    complement(67624..68007)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF02910, DE Fumarate
FT                   reductase/succinate dehydrogenase flavoprotein C-terminal
FT                   domain, score 6.7e-61"
FT   misc_feature    complement(68065..69060)
FT                   /note="HMMPfam hit to PF00890, DE FAD binding domain, score
FT                   4.5e-191"
FT   misc_feature    complement(69226..69255)
FT                   /note="PS00504 Fumarate reductase / succinate dehydrogenase
FT                   FAD-binding site."
FT   CDS             complement(69400..69783)
FT                   /transl_table=11
FT                   /gene="sdhD"
FT                   /locus_tag="BB3681"
FT                   /product="succinate dehydrogenase hydrophobic membrane
FT                   anchor protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2362"
FT                   /db_xref="GOA:Q7WD97"
FT                   /db_xref="InterPro:IPR014312"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD97"
FT                   /protein_id="CAE35654.1"
FT                   /translation="MADTKNYGPKRLVVGAHYGVTDFIAQRITAVILAVYTLVLIVGLL
FT                   IMPAFTYENWKALFTFHVFALPVGQILASLAFFALAWHAWIGVRDIWMDYVRPVGVRLL
FT                   LQVLTILWLVGSVVYFAQILWRI"
FT   misc_feature    complement(join(69409..69477,69538..69606,69634..69702))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BB3681 by TMHMM2.0 at aa 28-50, 60-82 and 103-125"
FT   CDS             complement(69783..70196)
FT                   /transl_table=11
FT                   /gene="sdhC"
FT                   /gene_synonym="cybA"
FT                   /locus_tag="BB3682"
FT                   /product="succinate dehydrogenase cytochrome B subunit"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2363"
FT                   /db_xref="GOA:Q7WD96"
FT                   /db_xref="InterPro:IPR014361"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD96"
FT                   /protein_id="CAE35655.1"
FT                   /translation="MSDSAAKPRPQFRNISVPQILSYRLPLAGKLSILHRISGALLFLC
FT                   LPLVIVPLFAASVTSPESYAQVAQYAANPLVKLVLLALIWGYLHHFCAGIRYLVLDLHI
FT                   GLDKVSAQKSAGVAFGVSLALTLVFGLKLFGVL"
FT   misc_feature    complement(join(69789..69854,69897..69965,70023..70091))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BB3682 by TMHMM2.0 at aa 36-58, 78-100 and 115-136"
FT   misc_feature    complement(69813..70160)
FT                   /note="HMMPfam hit to PF01127, DE Succinate dehydrogenase
FT                   cytochrome b subunit, score 4.3e-12"
FT   misc_feature    complement(70032..70196)
FT                   /note="Signal peptide predicted for BB3682 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.948) with cleavage site
FT                   probability 0.916 between residues 55 and 56"
FT   CDS             complement(70321..71100)
FT                   /transl_table=11
FT                   /locus_tag="BB3683"
FT                   /product="putative GntR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2364"
FT                   /db_xref="GOA:Q7WD95"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="PDB:3CNV"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD95"
FT                   /protein_id="CAE35656.1"
FT                   /translation="MAEARPDSLTRSRAAKPAGEGAAFSPLYRQIKELLVQSLDRGEWK
FT                   PGELIPSEIDLAARFQVSQGTVRKAVDELAAEHLLLRRQGKGTFVATHHEARVRYRFLR
FT                   LAPDEEGEGGRAESRILECRRLRAPAEIARALELRAGETVVTIRRQLSMNHMPTVIDDL
FT                   WLPGTHFRGLTLELLTASKAPLYGLFESEFGVSMVRADEKLRAVAASPEIAPLLGVEPG
FT                   RPLLQVDRISYTYGDRPMEVRRGLYLTDHYHYRNSLN"
FT   misc_feature    complement(70831..71010)
FT                   /note="HMMPfam hit to PF00392, DE Bacterial regulatory
FT                   proteins, gntR family, score 6.9e-20"
FT   CDS             71389..72378
FT                   /transl_table=11
FT                   /gene="mdH"
FT                   /locus_tag="BB3684"
FT                   /product="malate dehydrogenase"
FT                   /EC_number="1.1.1.37"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2365"
FT                   /db_xref="GOA:Q7WD94"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WD94"
FT                   /protein_id="CAE35657.1"
FT                   /translation="MSKPALRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIP
FT                   DEKAQKALKGVIMELEDCAFPLLHEVTAHSDPRTAFKDADVALLVGARPRGPGMERKDL
FT                   LSVNAQIFTAQGRALNDVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDH
FT                   NRALSQLSAKSGKRVADIEKLIVWGNHSPTMYPDFRFATVGGQGLTQLINDDAWNRDTF
FT                   IPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGSNGKWVTMGIPSDGSYGIPEGI
FT                   IYGFPVVTENGEYKMIKDLEIDAFSRERLDFTLKELLEERDGVKDLLK"
FT   misc_feature    71395..71859
FT                   /note="HMMPfam hit to PF00056, DE lactate/malate
FT                   dehydrogenase, NAD binding domain, score 6.1e-54"
FT   misc_feature    71866..72372
FT                   /note="HMMPfam hit to PF02866, DE lactate/malate
FT                   dehydrogenase, alpha/beta C-terminal domain, score 3.5e-33"
FT   CDS             72640..73533
FT                   /transl_table=11
FT                   /gene="prpB"
FT                   /locus_tag="BB3685"
FT                   /product="probable methylisocitrate lyase"
FT                   /EC_number="4.1.3.30"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2366"
FT                   /db_xref="GOA:Q7WD93"
FT                   /db_xref="HSSP:1UJQ"
FT                   /db_xref="InterPro:IPR018523"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD93"
FT                   /protein_id="CAE35658.1"
FT                   /translation="MSRPESPGALFRRALNEEQPLQIIGAINANHALLAKRAGYRAIYL
FT                   SGGGVAAGSLGLPDLGINTLDDVLTDVRRITDVCDVPLMVDIDTGFGPSAFNIARTVKS
FT                   LIKFGAAACHIEDQVGAKRCGHRPGKEIVSTEEMADRVKAAADARTDSDFYLIARTDAI
FT                   ASHGVDAAIERAIACVEAGADAIFAEAAYDLPTYDRFVKAVKVPVLANITEFGKTPLFS
FT                   VEELKSVGVGMVLYPLSAFRAMNKAAETVYQAIRRDGHQKNVVDLMQTRDELYDRIGYH
FT                   EFESQLDQLFQQGKSQ"
FT   CDS             73607..74809
FT                   /transl_table=11
FT                   /gene="prpC"
FT                   /locus_tag="BB3686"
FT                   /product="2-methylcitrate synthase"
FT                   /EC_number="2.3.3.5"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2368"
FT                   /db_xref="GOA:Q7WD92"
FT                   /db_xref="HSSP:1A59"
FT                   /db_xref="InterPro:IPR019810"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD92"
FT                   /protein_id="CAE35659.1"
FT                   /translation="MSTSQKKPTVQQKKPAAQPAEKAAFKPKKSVALSGVVAGNTALCT
FT                   VGRTGNDLHYRGYDILDFAGSAEFEEIAHLLVHGKLPNKAELKAYKEKLRALRGLPAQL
FT                   QNVLECLPASSHPMDVMRTAVSVLGCVLPEKDDHNTPGARDIADRLMANLGSALLYWYH
FT                   YSHNGRVIDVQTDDDSIGGHFLHLLHGAKPSDEWVRAMHTSLILYAEHEFNASTFTGRV
FT                   IAGTGSDMYSSITGAIGALRGPKHGGANEVAFEVQKRYETPDEAEADIRQRVENKEVII
FT                   GFGHPVYTVSDPRNKVIKDVAKKLSRKAGSTKMFDIAERLETVMWDIKKMFPNLDWFSA
FT                   VSYHMMGVPTAMFTPLFVIARTAGWSAHIIEQRIDNKIIRPTANYVGPEDQTYVPISKR
FT                   A"
FT   misc_feature    73703..74749
FT                   /note="HMMPfam hit to PF00285, DE Citrate synthase, score
FT                   3e-98"
FT   misc_feature    74450..74488
FT                   /note="PS00480 Citrate synthase signature."
FT   CDS             74829..77522
FT                   /transl_table=11
FT                   /gene="acnA"
FT                   /gene_synonym="acnM"
FT                   /gene_synonym="acn"
FT                   /locus_tag="BB3687"
FT                   /product="aconitate hydratase"
FT                   /EC_number="4.2.1.3"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2369"
FT                   /db_xref="GOA:Q7WD91"
FT                   /db_xref="InterPro:IPR015937"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD91"
FT                   /protein_id="CAE35660.1"
FT                   /translation="MPRRVRHAGPARPARPPQPRFPACLHAHRDTPVMNTKYRKNLPGT
FT                   SLDYFDARQAVEDLQAGAWATLPYTSRVLAENLVRRCDPATLSDSLRQLIERRRDMDFP
FT                   WYPARVVCHDILGQTALVDLAGLRDAIADAGGDPAQINPVVPTQLIVDHSLAVEYPGFD
FT                   KDAFEKNRAVEDRRNEDRFHFINWTKLAFRNVDVIPPGNGIMHQINLEKMSPVVQVRDG
FT                   VAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAENVMLGRASWMRLPDIVGVELTGRPQA
FT                   GITCTDIVLALTEFLRREKVVGAYLEFLGEGASALTIGDRATISNMTPEFGATAAMFYI
FT                   DGQTTDYLTLTGREDSQVKLVETYARQAGLWADDLAGAQYERMLRFDLSSVVRNMAGPS
FT                   NPHKRVATTELAERGIAGPWQETPGQMPDGAVIIAAITSCTNTSNPRNVIAAALLARNA
FT                   NRAGLTRKPWVKSSLAPGSKAVQLYLEEAGLLPDLEKLGFGIVAFACTTCNGMSGALDP
FT                   KIQQEIIERDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVIAYAIAGTVRFDIEKDA
FT                   LGVDAAGKPVTLKDIWPSDAEIDAVVTASVKPEQFRKVYEPMFRFAQEQTGKIDPLYAW
FT                   RPQSTYIRRPPYWEGALAGERTLAGMRPLAVLGDNITTDHLSPSNAIMADSAAGEYLAK
FT                   MGLPEEDFNSYATHRGDHLTAQRATFANPKLINEMAVVDGQVKQGSLARLEPEGKVMRM
FT                   WETIETYMDRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHRTNLIGM
FT                   GVLPLEFQAGVDRKTLGIDGTETFDVVGERVPRATLTLVIHRRDGEQVQVPVICRLDTA
FT                   EEVSIYEAGGVLQRFAQDFLEATQTA"
FT   misc_feature    75045..76526
FT                   /note="HMMPfam hit to PF00330, DE Aconitase family
FT                   (aconitate hydratase), score 3.4e-151"
FT   misc_feature    76113..76145
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    76890..77414
FT                   /note="HMMPfam hit to PF00694, DE Aconitase C-terminal
FT                   domain, score 2.1e-30"
FT   CDS             77579..78769
FT                   /transl_table=11
FT                   /locus_tag="BB3688"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2370"
FT                   /db_xref="InterPro:IPR007400"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD90"
FT                   /protein_id="CAE35661.1"
FT                   /translation="MAFLPQLKVRATYMRGGTSKGVFFRLQDLPPAAQVPGPARDALLL
FT                   RVIGSPDPYGKQIDGMGGATSSTSKTVILDRSQRPGHDVDYLFGQVSIDSAFVDWSGNC
FT                   GNLSAAVGAFAIESGLVDPDRVPRNGTAVVRIWQANIGKTILGHIPIVDGQVQESGDFE
FT                   LDGVTFPAAEVQLEFLDPADEGEGEGGAMFPTGNVLDTLEVPGIGTLQATLINAGIPTI
FT                   FVDAQAVGYTGSELQDDINGDAKALAMFETLRAHGALRMGLIADVAEAAKRQHTPKVAF
FT                   VAPPAAYTASSGKQVGAGDIDLRVRALSMGKLHHAMMGTAAVAIGTAAAVPGTLVNLAA
FT                   GGGERESVRFGHPSGTLRVGAQARLEDGQWKVTKAVMSRSARVLMEGHIRVPAETL"
FT   CDS             78787..80244
FT                   /transl_table=11
FT                   /gene="prpD"
FT                   /locus_tag="BB3689"
FT                   /product="2-methylcitrate dehydratase"
FT                   /EC_number="4.2.1.79"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2371"
FT                   /db_xref="GOA:Q7WD89"
FT                   /db_xref="InterPro:IPR012705"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD89"
FT                   /protein_id="CAE35662.1"
FT                   /translation="MSHATIPFNQRPAWDSALADIVDYVLDYEVQGKLAYETARNCLID
FT                   TLGCGMEALEYPACRKLLGPVVPGTVVPHGAKVPGTQFQLDPVQAAFNIGAMIRWLDFN
FT                   DTWLAAEWGHPSDNLGGILATADWLSRSAVANGRPPLAMRDVLTAMIKAHEIQGCIALE
FT                   NSFNKVGLDHVVLVKVASTAVVAHMLGLSREEILNAVSLAWVDGQSLRTYRHAPNTGSR
FT                   KSWAAGDATSRAVRLALIARTGEMGYPSALTAPTWGFYDVLFKGQPFRFQRPYGSYVME
FT                   NVLFKISFPAEFHAQTAVECAMEIHALLKARGKSADDIRRITIRTHEACIRIIDKQGPL
FT                   NNPADRDHCIQYMVAVPILYGRLTAADYEDGIARDPRIDALRARIVCVEDPAFTTDYHD
FT                   PAKRSIANALTVEFNDGSRLDEIVCEYPIGHRRRRADGIPLLEAKFRTNLARAFPARQQ
FT                   ERILAASLDQEKLEAMPVNEYVDLYVI"
FT   misc_feature    78829..80217
FT                   /note="HMMPfam hit to PF03972, DE MmgE/PrpD family, score
FT                   6e-236"
FT   CDS             80266..80736
FT                   /transl_table=11
FT                   /locus_tag="BB3690"
FT                   /product="putative conserved inner membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2372"
FT                   /db_xref="InterPro:IPR005265"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD88"
FT                   /protein_id="CAE35663.1"
FT                   /translation="MGLQYNVAFHARDALSMLWVKTFHIVFIAAWFAGLFYLPRIYVNL
FT                   AQQSDPAIQSCLLGMARRLYRFTTLLAIPAIVLGLWLYVGYRIGTGPGNAWMHAKLLFV
FT                   LLIIGYHHACGVMLRKFEQGRNARTHKFYRWFNEIPVVLLLIVVTLVVVKPF"
FT   misc_feature    join(80308..80376,80455..80523,80551..80619,80656..80724)
FT                   /note="4 probable transmembrane helices predicted for
FT                   BB3690 by TMHMM2.0 at aa 15-37, 64-86, 96-118 and 131-153"
FT   misc_feature    80308..80730
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF03653, DE Uncharacterised protein
FT                   family (UPF0093), score 1.4e-27"
FT   CDS             80766..82265
FT                   /transl_table=11
FT                   /locus_tag="BB3691"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2373"
FT                   /db_xref="GOA:Q7WD87"
FT                   /db_xref="InterPro:IPR004114"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD87"
FT                   /protein_id="CAE35664.1"
FT                   /translation="MPTDDKARPRKTLTIKKTAPAAPSADDEAPRRKRTGARARLVAQM
FT                   ERAKEQQHAPRRPPEPRDAAAEAPQPARRDDRAARAARAWQDEHAPRRKAPRQDAAHQD
FT                   DAPRRRPRAPREAEIFPVYAPCPQGIEEALAAEMQALGFEDARAGRAGCAFSTDWAGVQ
FT                   RANLYSRLATRILVQVAQADIGHEDDILELARSVPWERWFGPDETLRVDTSAIKSPVKS
FT                   LQYCNLRAKDGICDRLREVEGARPDIDTVRPDARVHLFLSGTTATLYLDTSGESLFKRG
FT                   WRLDKGEAPLRENLAAGMLALAGWDPAEPLLDPFCGSGTILIEAAWIALGVPPGISRPF
FT                   GFERLRNHDARRWQDLKADARTRIQTQLETPLFGYDLDPRAIQYAQANAERAWLTADTI
FT                   RFEVGDARHLAAPADHGWIVTNPPYGERMETEDDSEMWRDWAACLKRQFAGWQVHVISS
FT                   DMTLPQRLRLKPLRRVPLHNGALDCRLFGFELVPASYRKPA"
FT   misc_feature    81285..81581
FT                   /note="HMMPfam hit to PF02926, DE THUMP domain, score
FT                   2.4e-10"
FT   misc_feature    81603..82226
FT                   /note="HMMPfam hit to PF01170, DE Putative RNA methylase
FT                   family UPF0020, score 2.4e-57"
FT   misc_feature    81702..81737
FT                   /note="PS01261 Uncharacterized protein family UPF0020
FT                   signature."
FT   misc_feature    82017..82037
FT                   /note="PS00092 N-6 Adenine-specific DNA methylases
FT                   signature."
FT   CDS             82481..82663
FT                   /transl_table=11
FT                   /locus_tag="BB3692"
FT                   /product="hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2374"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD86"
FT                   /protein_id="CAE35665.1"
FT                   /translation="MNPNTFRLTDELERQLMLQAMEDQFRPRPMRALAAGLRKLADGIK
FT                   SVAGKSGSKAAHSAA"
FT   CDS             82797..83327
FT                   /transl_table=11
FT                   /locus_tag="BB3693"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2375"
FT                   /db_xref="InterPro:IPR010432"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD85"
FT                   /protein_id="CAE35666.1"
FT                   /translation="MNATHDLQSTPSRLRRFACMMYEGVLLFGVVFIASYLFDTLTQSK
FT                   HGLMLRDGRQVWLFLVIGLYFVLCWRRRGQTLPMKTWNIRLVDRDGQPPSTPRLVLRYV
FT                   LAWPLPLGAAALVWLASSLTGWRSVDMFIVLAPFAIFAWSWVDPDGQFLHDRLLGTRLR
FT                   NAPPRAARAVAGT"
FT   misc_feature    join(82857..82910,82953..83006,83091..83159,83187..83234)
FT                   /note="4 probable transmembrane helices predicted for
FT                   BB3693 by TMHMM2.0 at aa 21-38, 53-70, 99-121 and 131-146"
FT   CDS             83393..84265
FT                   /transl_table=11
FT                   /locus_tag="BB3694"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2376"
FT                   /db_xref="GOA:Q7WD84"
FT                   /db_xref="InterPro:IPR004843"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD84"
FT                   /protein_id="CAE35667.1"
FT                   /translation="MTARMEATVTEIHPTHWRTLWISDIHLGTAGCKAEFLLDFLDHND
FT                   SDTLYLVGDIVDGWQLRKHWHWPRAHNDVVQRILRKARNGTRVVFVPGNHDEFAREFAG
FT                   FAFGDIEILDEDVHVTAQGVKLLVLHGDQFDGVIQHSKWLAHLGDSLYQTALWLNHHFN
FT                   RLRHRLGLHYWSLSQYLKHKVKNAVAFITDFEEALAGEARRRGLDGVVCGHIHQPALRQ
FT                   VDGILYCNDGDWVESLSALGETHEGQLQLLDWAACMAERGNDPAAARPRRSLSLPALPS
FT                   ALRRQGRHP"
FT   misc_feature    83441..84046
FT                   /note="HMMPfam hit to PF00149, DE Calcineurin-like
FT                   phosphoesterase, score 1e-08"
FT   CDS             84403..86067
FT                   /transl_table=11
FT                   /locus_tag="BB3695"
FT                   /product="putative AMP-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2377"
FT                   /db_xref="GOA:Q7WD83"
FT                   /db_xref="InterPro:IPR000873"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD83"
FT                   /protein_id="CAE35668.1"
FT                   /translation="MNDQYEALYQTFRWLVPTQFNIADACCHRWAASSPDARRIAIYYE
FT                   DEAGNREVWTYARLAEAANQLANGLVKMGVERGDRVGVVLGQRPETVVAHMAIYSVGAV
FT                   VLPLSPLFGPEALESRLRDADARVAIVDYASSANLLAISDNCPNLHQIIGIGFADERVL
FT                   PWRSLLARQPNEFKMVATRASDPAILMYTSGTTGAPKGALLPHSVLIGNLPGFVASQDW
FT                   FPRPGDVFWSPADWAWTGGMMDALLPTLYFGHPIVGTRGRFTPERAFELMERYQVTNTF
FT                   LFPTALKMMMKSVPEPRGRYQLALRSIMSAGESVGETVFEWCEQALGITPNEMFGQTEL
FT                   NYVVGNSNRRWPARPGSMGRPYPGHRVAVIDEAGRPVKPGETGEVALNRFDIHGFPDPV
FT                   LFLGYWRNEAATAAKFTDDWCRTGDLASIDADGYLWYAGRADDVFKSAGYRIGPGEIEN
FT                   CLLGHPAVANAAVVPKPDAERGALVKAYVVLTPEYQGRDPDSITQVLQEHVRDRLAPYE
FT                   YPKEIEYVDALPMTTTGKIQRAVLRRREAERASGAHS"
FT   misc_feature    84565..85815
FT                   /note="HMMPfam hit to PF00501, DE AMP-binding enzyme, score
FT                   4.4e-113"
FT   misc_feature    84967..85002
FT                   /note="PS00455 Putative AMP-binding domain signature."
FT   CDS             86079..86600
FT                   /transl_table=11
FT                   /locus_tag="BB3696"
FT                   /product="putative transferase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2378"
FT                   /db_xref="GOA:Q7WD82"
FT                   /db_xref="InterPro:IPR001451"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD82"
FT                   /protein_id="CAE35669.1"
FT                   /translation="MPIYQLDDLIPAIDPSAYLADSADIIGNVTLEAGVSIWSQVSIRG
FT                   DNAPILVRSGTNIQEASVLHVDAGCPMTVGPNVTIGHQAMLHGCTIHEGALVGMQAIVL
FT                   NNAVIGRNCLIGAGAIIPEGRIIPDNSLVIGIGKIVRELSAEEIAEMQANNRHYVERGQ
FT                   HYKTALKRIG"
FT   misc_feature    86160..86213
FT                   /note="HMMPfam hit to PF00132, DE Bacterial transferase
FT                   hexapeptide (four repeats), score 10"
FT   misc_feature    86340..86393
FT                   /note="HMMPfam hit to PF00132, DE Bacterial transferase
FT                   hexapeptide (four repeats), score 64"
FT   misc_feature    86394..86447
FT                   /note="HMMPfam hit to PF00132, DE Bacterial transferase
FT                   hexapeptide (four repeats), score 0.045"
FT   CDS             86650..87570
FT                   /transl_table=11
FT                   /locus_tag="BB3697"
FT                   /product="putative chaperonin"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2379"
FT                   /db_xref="GOA:Q7WD81"
FT                   /db_xref="HSSP:1HW7"
FT                   /db_xref="InterPro:IPR016154"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD81"
FT                   /protein_id="CAE35670.1"
FT                   /translation="MTDLLKKYLFEDRSVRIQAVRLHETWLQAQVNHQHPPAVTRLLGE
FT                   LVAASTLLAANIKFDGSLVLQIQGDGPLALLVVECRSDLSLRATVKVREGQSIPDSGTM
FT                   QSLLNANGNGNGRFMVVLDPQRKVPGQQAYQGIVPLEGETVAEALGHYMKASEQLDTQL
FT                   WLAADEQHAAGLLVQRLPDHGGTTQGDAAESWSRATHLAATLQPAELLATDTDTLIHRL
FT                   YWEEPLMAFEPHAVRWFCPCTRERVSSMLRSLGQAEVESILAEQGRVEVSCDFCGKPYE
FT                   FDKVDCAGLFAPNSPMPEQDPPTVH"
FT   misc_feature    86656..87519
FT                   /note="HMMPfam hit to PF01430, DE Hsp33 protein, score
FT                   3.5e-59"
FT   CDS             87647..88399
FT                   /transl_table=11
FT                   /locus_tag="BB3698"
FT                   /product="putative periplasmic protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2380"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD80"
FT                   /protein_id="CAE35671.1"
FT                   /translation="MEHAAAVPPPRHAGTAALEFMLAGMLLLAASIATVETMYWHQMRH
FT                   LAYLALIEAARAGATSHGEPGAIARAFARAMRARHAAGQPGQAATRQQHAWNRQQARTG
FT                   LPAWRIAILQPGPTAFADHGVANRGLRGPPRIRNDYQAEQHAQRLAQGWPGGAGPRSGL
FT                   DIFQANTLRLRLVYRLAPLSPWLGALLRASAALAQACARPAWRQGLLPIRLELEMDMQS
FT                   DPALWPARPDVSYGDARDCDGLTAAASG"
FT   misc_feature    87683..87751
FT                   /note="1 probable transmembrane helix predicted for BB3698
FT                   by TMHMM2.0 at aa 13-35"
FT   CDS             complement(join(88380..88559,88563..88778))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BB3698A"
FT                   /product="conserved hypothetical protein (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2381"
FT   CDS             complement(88803..89282)
FT                   /transl_table=11
FT                   /locus_tag="BB3699"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2382"
FT                   /db_xref="InterPro:IPR003779"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD79"
FT                   /protein_id="CAE35673.1"
FT                   /translation="MTQRLDYQQQSPELFKKFVAFSLALKQSSIETSIRDLVDIRASQI
FT                   NGCTFCLDMHVKEATMHGERPLRLHHIAAWRESTLFSPRERAALAWTEVLTRIPAEGIS
FT                   DEIHAQVREQLSEQELSDLTFLVMSINAWNRVNVAFRIEPGKYDQAFGVDKSGLS"
FT   CDS             complement(89332..90087)
FT                   /transl_table=11
FT                   /locus_tag="BB3700"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2383"
FT                   /db_xref="GOA:Q7WD78"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD78"
FT                   /protein_id="CAE35674.1"
FT                   /translation="MKIVVIGGTGLIGSNVVNRLRRDGHETVAASPGTGVNTITGEGLA
FT                   QALDGAQVVVDVANSPSFEDQAVMAFFETSGRTLLAAEAAAGVTHHLALSVVGTDRLAD
FT                   SGYFRAKVAQEALIKASKVPYTILRATQFFEFIESIVNAGADGDTVRLSPALIQPIAAD
FT                   DVSAALADLAVGMPLNGTVEVAGPDRLPLDELARKFLAARGDRRQVVADVHARYFGSEL
FT                   DDRSLVAGDNPRVGSTRLMNWLSRSPAPQ"
FT   misc_feature    complement(89854..89877)
FT                   /note="PS00097 Aspartate and ornithine
FT                   carbamoyltransferases signature."
FT   CDS             90297..91862
FT                   /transl_table=11
FT                   /locus_tag="BB3701"
FT                   /product="putative transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2384"
FT                   /db_xref="GOA:Q7WD77"
FT                   /db_xref="InterPro:IPR001867"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD77"
FT                   /protein_id="CAE35675.1"
FT                   /translation="MRLAFDDCLLDLDRRELTRASRAVATAPQVFDLLAYLLANRERVV
FT                   DRDELIQAVWNGRIVSESTLASHINAVRTAVGDSGQRQAVVRTVPRKGFRFVAEVRTDA
FT                   PAPAGMARTPAPPATAPALPAKPSIAVLPFVNLSADPEQDYLADGVVEDIIAALSQYRW
FT                   LFVVARNSSFTYKGRAVNVRQVGRELGVRYVLEGSWRKERNRVRITGQLIDAASGAHHW
FT                   ADRYEGVLDDIFALQDQITENVVGAIAPRLERAEIERARRKPTDSLDAYDYYLRGMACA
FT                   HQGTRQAAEQALPLFHRAIACDPEFAPAYAMAAWCHCWRKVNGWMQDKPREMAEGARLA
FT                   RRAVELDRIDAVALTRSGHALGHLAGDLQGGIALLDRALVLNPNLAAAWFLSAFLRLWH
FT                   GETAQAVTHFTHAMRLSPLDPELYRMQAGMGVAHLFLGHHDAATAWAEQALRELPSFLM
FT                   AVAIAAAGHALAGHGAQARRAMDQLRRLDPALRLAGLSEWLPIRKGENLAILAQGLRLA
FT                   GLPE"
FT   misc_feature    90360..90575
FT                   /note="HMMPfam hit to PF00486, DE Transcriptional
FT                   regulatory protein, C terminal, score 0.00018"
FT   misc_feature    91104..91214
FT                   /note="HMMPfam hit to PF00515, DE TPR Domain, score 6.1"
FT   misc_feature    91347..91451
FT                   /note="HMMPfam hit to PF00515, DE TPR Domain, score 8"
FT   misc_feature    91452..91553
FT                   /note="HMMPfam hit to PF00515, DE TPR Domain, score 5.1"
FT   misc_feature    91563..91664
FT                   /note="HMMPfam hit to PF00515, DE TPR Domain, score 1.4"
FT   CDS             complement(91923..92279)
FT                   /transl_table=11
FT                   /locus_tag="BB3702"
FT                   /product="putative conserved inner membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2385"
FT                   /db_xref="GOA:Q7WD76"
FT                   /db_xref="InterPro:IPR007060"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WD76"
FT                   /protein_id="CAE35676.1"
FT                   /translation="MRLLFLVLLVLLGLIQYPLWLGKGGWFKVWDLQRQVAEQRETNDG
FT                   LRARNTALEAEVRDLATGVGAVEERARSELGMMREGEVFVHILPPGTPLPSDNSTPQAS
FT                   ALSKPRPPATPPRR"
FT   misc_feature    complement(92199..92267)
FT                   /note="1 probable transmembrane helix predicted for BB3702
FT                   by TMHMM2.0 at aa 5-27"
FT   CDS             complement(92361..93647)
FT                   /transl_table=11
FT                   /gene="eno"
FT                   /locus_tag="BB3703"
FT                   /product="enolase"
FT                   /EC_number="4.2.1.11"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2386"
FT                   /db_xref="GOA:Q7WD75"
FT                   /db_xref="HSSP:1E9I"
FT                   /db_xref="InterPro:IPR000941"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WD75"
FT                   /protein_id="CAE35677.1"
FT                   /translation="MSAIVDIIGREILDSRGNPTVECDVLLESGAMGRASVPSGASTGS
FT                   REAIELRDGDKGRYLGKGVLRAVENLNTEISEALMGLDAQEQTFVDRTLIELDGTDSKE
FT                   RLGANAMLAASMAVARAAADESGLSLYRYFGGSGPMSMPVPMMNVINGGAHANNTLDLQ
FT                   ELMILPVGAASFREALRWGAEVFHMLKKLIHDQGMSTAVGDEGGFAPNVASHEAAIQLI
FT                   LKAITEAGYEPGTQIALGLDCASSEFYRDGKYTLAGEGGVSLSSQEFANLLATWCDKYP
FT                   IISIEDGMAENDWDGWKLLTDQLGKKVQLVGDDLFVTNTRILREGIQKGVANSILIKIN
FT                   QIGTLTETFAAIEMAKRAGYTAVVSHRSGETEDSTIADIAVATNAMQIKTGSLSRSDRM
FT                   AKYNQLLRIEEELAEVASYPGLEAFYNLR"
FT   misc_feature    complement(92367..93233)
FT                   /note="HMMPfam hit to PF00113, DE Enolase, C-terminal TIM
FT                   barrel domain, score 2.1e-169"
FT   misc_feature    complement(92604..92645)
FT                   /note="PS00164 Enolase signature."
FT   misc_feature    complement(93246..93641)
FT                   /note="HMMPfam hit to PF03952, DE Enolase, N-terminal
FT                   domain, score 4.7e-60"
FT   CDS             complement(93653..93937)
FT                   /transl_table=11
FT                   /locus_tag="BB3704"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2387"
FT                   /db_xref="InterPro:IPR010753"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD74"
FT                   /protein_id="CAE35678.1"
FT                   /translation="MSAYLIADVSVTKPAQYEDYKRLSTLAMRAYDAKVLVRGGESRHL
FT                   EGREPGRTVIMEFPSVDKAQAFYDSYQYRRARNAREGAAIMNMFIVQGM"
FT   CDS             complement(93947..94804)
FT                   /transl_table=11
FT                   /gene="kdsA"
FT                   /locus_tag="BB3705"
FT                   /product="2-dehydro-3-deoxyphosphooctonate aldolase"
FT                   /EC_number="2.5.1.55"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2388"
FT                   /db_xref="GOA:Q7WD73"
FT                   /db_xref="InterPro:IPR006218"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WD73"
FT                   /protein_id="CAE35679.1"
FT                   /translation="MMKACGFDIGLDHPFFLIAGPCVIESRELAFETAGRLKEITGKLG
FT                   VSFIYKSSFDKANRSSGKSFRGPGMDEGLKILADVRAQLDVPVLTDVHDIDQVAPVAAV
FT                   VDMLQTPAFLCRQTDFIRACAATLKPVNIKKGQFLAPHDMLQVARKARDAALEAGGDGN
FT                   NILVCERGASFGYNNLVSDMRSLAIMRETDCPVVFDATHSVQLPGGQGASSGGQREFVP
FT                   VLARAAVAVGVAGLFMETHPNPACAMSDGPNAVPLDRMAELLESLVALDRVTKRSGFLE
FT                   NQFV"
FT   misc_feature    complement(93956..94801)
FT                   /note="HMMPfam hit to PF00793, DE DAHP synthetase I family,
FT                   score 6.6e-105"
FT   misc_feature    complement(94613..94636)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    complement(94748..94780)
FT                   /note="PS00284 Serpins signature."
FT   CDS             complement(94801..96453)
FT                   /transl_table=11
FT                   /gene="pyrG"
FT                   /locus_tag="BB3706"
FT                   /product="CTP synthase"
FT                   /EC_number="6.3.4.2"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2389"
FT                   /db_xref="GOA:Q7WD72"
FT                   /db_xref="InterPro:IPR000991"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WD72"
FT                   /protein_id="CAE35680.1"
FT                   /translation="MTKYVFVTGGVVSSLGKGIAAASLAAILESRGLQVTLLKLDPYIN
FT                   VDPGTMSPFQHGEVFVTEDGAETDLDLGHYERFISARMRKVNNFTTGQIYESVLRKERR
FT                   GDYLGKTVQVIPHITNEIQDFVARGAEAAWNGATDVAIVEIGGTVGDIESLPFLEAARQ
FT                   MSLRMGRNNAAFVHLTLVPYIASAGELKTKPTQHSVQKLREIGIYPNVLLCRADRRIPD
FT                   DERAKISMFSNVPLDAVISVWDVDSIYKIPAMLHKQGVDNIVCEALGLTPPPADLSMWD
FT                   NLVDALEHPQDSVTIGMVGKYVDLTESYKSLSEALVHAGIHTRSKVNIEYIDSEDIETR
FT                   GTDQLKHLDAILVPGGFGKRGTEGKIAAIRYARENGVPYLGICLGMQLAVIEFARHVAG
FT                   LGGANSTEFDPAAPHPVVALITEWMDREGRVERRDNSSDLGGTMRKGAQRCPIRPGTRA
FT                   QSIYGDDVNERHRHRYEVNNVYVPRLEDAGMVISARTPTENLPEMMELPSHPWFVGVQF
FT                   HPEFTSTPRDGHPLFSSYIRAALEHKAQRAKEA"
FT   misc_feature    complement(94840..95544)
FT                   /note="HMMPfam hit to PF00117, DE Glutamine
FT                   amidotransferase class-I, score 4.3e-71"
FT   misc_feature    complement(95287..95322)
FT                   /note="PS00442 Glutamine amidotransferases class-I active
FT                   site."
FT   misc_feature    complement(96373..96441)
FT                   /note="1 probable transmembrane helix predicted for BB3706
FT                   by TMHMM2.0 at aa 5-27"
FT   misc_feature    complement(96379..96453)
FT                   /note="Signal peptide predicted for BB3706 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.958) with cleavage site
FT                   probability 0.925 between residues 25 and 26"
FT   CDS             complement(96669..98468)
FT                   /transl_table=11
FT                   /locus_tag="BB3707"
FT                   /product="putative aminopeptidase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2391"
FT                   /db_xref="GOA:Q7WD71"
FT                   /db_xref="InterPro:IPR000994"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD71"
FT                   /protein_id="CAE35681.1"
FT                   /translation="MSVTDNRIGALRRAMRQHQLDAYIVPSADPHLSEYLPGRWQGRRW
FT                   LSGFTGSVGTLVVTRDFAGLWVDSRYWVQAENQLAGTGVTLMKIAQASTPGHVDWLAAR
FT                   LPAGSRVGVDGQVLGLAAFRALSAALAPAGIHLDILSDLLQAIWPDRPGLPSAPVYELP
FT                   APHACEPRADKLARVRAAMRAQGADAHWLSTLDDIAWLFNLRGSDVEYNPVFLAHALVG
FT                   PDHATLFVADGKIDAALRQALAADGVETADYGLAAEALGSLHTDQTLLIDPARVTCGVF
FT                   HAMDPAVPRIEAINPSTLYKSRKSDAELASVRAAMEQDGAALCEFFAWFEGAVGREPVS
FT                   ELTIDERITAARSRRPGYVCPSFATIAGFNANGAMPHYRATPQAHAAIEGDGLLLIDSG
FT                   GQYLGGTTDITRVVAVGAPSADQKVDFTLVLKGMIALSRASFPRGTPSPMLDAIARAPI
FT                   WAGGAEYGHGTGHGVGYFLNVHEGPQVISYRAAPGPHTAMEPGMITSNEPGIYRPGRWG
FT                   VRIENLVANRTWLEGELGEFLCFETLTLCPIDTRCIDATLLRADEIAWLDDYHRTVRER
FT                   LAPWVEGAALQWLQARTRPLGAD"
FT   misc_feature    complement(96828..97565)
FT                   /note="HMMPfam hit to PF00557, DE metallopeptidase family
FT                   M24, score 6.3e-08"
FT   CDS             complement(98477..99295)
FT                   /transl_table=11
FT                   /locus_tag="BB3708"
FT                   /product="putative transport protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2392"
FT                   /db_xref="HSSP:1HI9"
FT                   /db_xref="InterPro:IPR007035"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD70"
FT                   /protein_id="CAE35682.1"
FT                   /translation="MKVLISTDIEGVAGVFHAEQVRPGNGEYERARAWMTGEANAAIAG
FT                   AIAGGAEEVLVNDSHGGFRNLLPDQLDERARLVLGKPRYLGMMGGLEEPCDAVFMIGYH
FT                   SRSQGRGVLAHTINSFAFARVFINGTELGEAGLYGALAGELGVPVALASGDDVFIAETR
FT                   PLFPAAQWVQTKVAHGQGSGVTLTPAAARRAIAQAAETAVRNLDGLAPLRIAAPIECRL
FT                   QTQGAALADLFCTWPTLERVDGVTLRFTVDSMQAAIRMLNSLAAMSFMLR"
FT   CDS             complement(99322..100470)
FT                   /transl_table=11
FT                   /locus_tag="BB3709"
FT                   /product="probable D-aminopeptidase"
FT                   /EC_number="3.4.11.19"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2393"
FT                   /note="Similar to Ochrobactrum anthropi D-aminopeptidase
FT                   dmpA SWALL:Q59632 (EMBL:X97669) (375 aa) fasta scores: E():
FT                   1.9e-33, 37.7% id in 358 aa, and to Ralstonia solanacearum
FT                   probable D-aminopeptidase protein rsc1383 or rs04666
FT                   SWALL:Q8XZL2 (EMBL:AL646064) (341 aa) fasta scores: E():
FT                   6.4e-84, 69.43% id in 337 aa"
FT                   /db_xref="GOA:Q7WD69"
FT                   /db_xref="HSSP:1B65"
FT                   /db_xref="InterPro:IPR005321"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD69"
FT                   /protein_id="CAE35683.1"
FT                   /translation="MQAPRRSGRPRGGPVISRAVATRTNAMEQLDLPRIGMLPAGELDS
FT                   IGDVPGVTVGHFTLAQGARQTGVTVVRPHEGDPFRNKVPAAATVLNGFGKSCGLIQVEE
FT                   LGVLETPIALTNTFAVGAVANAQIRQAIAANPEIGRAWPTVNPLVFECNDGYLNDIQAQ
FT                   AVAEAHYEQAWRGAASVFEQGSVGAGRGMSSFGFKGGIGSASRLAEAYPGQRYTVGALV
FT                   LSNFGQRSSMTIAGRPFGRRLAAAARDGEPAGQPEKGSIILLLATDAPLDSRQLRRLSL
FT                   RAGAGLARTGSVFGHGSGDIALAFSTAYTIPHLAERGMPVQVMLHETRIDALFEAAAEA
FT                   VEQAIVAALWRAETVAGRDGHVRRAIREAAPQWRQWLAETAF"
FT   misc_feature    complement(99355..100344)
FT                   /note="HMMPfam hit to PF03576, DE Peptidase family T4,
FT                   score 4.5e-83"
FT   CDS             complement(100488..101387)
FT                   /transl_table=11
FT                   /locus_tag="BB3710"
FT                   /product="putative binding-protein-dependent transport
FT                   permease"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2394"
FT                   /db_xref="GOA:Q7WD68"
FT                   /db_xref="InterPro:IPR000515"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD68"
FT                   /protein_id="CAE35684.1"
FT                   /translation="MSHTNTAAVAAQAAKEDVRTPASEFWRKFKKQKLAVGAGLFVLLL
FT                   ALIAILAPWIVPFDPENFFDYDALNAGPSATHWLGVDSLGRDIFSRIVMGARISLAAGF
FT                   LSVAMGAVVGTFMGLMAGYYQGWWERITMRISDVLLAFPGMLLAIGVVAILGSSMVNVI
FT                   VAVAVFSVPAFARLVRGNTLAIKQMTYVEAVRSVGASDWTIIMRHILPGTISPIVVYGT
FT                   MRIGTSIITAASLSFLGMGAQPPTPEWGAMLSEARADMVIAPHVAIFPALAIFFTVLAF
FT                   NLLGDGLRDALDPRIDRK"
FT   misc_feature    complement(join(100536..100604,100662..100730,
FT                   100854..100913,100923..100976,101010..101078,
FT                   101220..101288))
FT                   /note="6 probable transmembrane helices predicted for
FT                   BB3710 by TMHMM2.0 at aa 34-56, 104-126, 138-155, 159-178,
FT                   220-242 and 262-284"
FT   misc_feature    complement(100614..100844)
FT                   /note="HMMPfam hit to PF00528, DE Binding-protein-dependent
FT                   transport systems inner membrane component, score 0.004"
FT   CDS             complement(101395..102315)
FT                   /transl_table=11
FT                   /locus_tag="BB3711"
FT                   /product="putative binding-protein-dependent transport
FT                   permease"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2395"
FT                   /db_xref="GOA:Q7WD67"
FT                   /db_xref="InterPro:IPR000515"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD67"
FT                   /protein_id="CAE35685.1"
FT                   /translation="MLTYIVKRLLGMIPTLLLVAVVVFLFVHMLPGDPARLAAGQEADQ
FT                   ETVELVRQELGLDLPLPQQFVRYFGHMLQGDLGTSLRTKRPVSTEIADRFMPTLWLTLA
FT                   SMIWSVVFGMAIGVVSAVWRNRWPDRLGMTLAVSGISFPAFALGMMLMQVFSVNLGWLP
FT                   TVGASSWKHYILPSLTLGAAVAAVMARFTRASFVEVIQEDFVRTARAKGLSERVVVTKH
FT                   ALRNALIPVVTMMGLQFGFLLGGSIVVETVFNWPGLGRLLVDAVTQRDYPVIQGLVLLF
FT                   SLEFILINLIVDVLYGVINPSIRYK"
FT   misc_feature    complement(join(101419..101487,101569..101637,
FT                   101743..101802,101845..101913,101950..102018,
FT                   102223..102291))
FT                   /note="6 probable transmembrane helices predicted for
FT                   BB3711 by TMHMM2.0 at aa 9-31, 100-122, 135-157, 172-191,
FT                   227-249 and 277-299"
FT   misc_feature    complement(101515..101730)
FT                   /note="HMMPfam hit to PF00528, DE Binding-protein-dependent
FT                   transport systems inner membrane component, score 4.8e-09"
FT   misc_feature    complement(101641..101727)
FT                   /note="PS00402 Binding-protein-dependent transport systems
FT                   inner membrane comp. sign."
FT   misc_feature    complement(102202..102315)
FT                   /note="Signal peptide predicted for BB3711 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.960) with cleavage site
FT                   probability 0.324 between residues 38 and 39"
FT   CDS             complement(102377..103930)
FT                   /transl_table=11
FT                   /locus_tag="BB3712"
FT                   /product="putative binding-protein-dependent transport
FT                   periplasmic protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2396"
FT                   /db_xref="GOA:Q7WD66"
FT                   /db_xref="HSSP:1UQW"
FT                   /db_xref="InterPro:IPR000914"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD66"
FT                   /protein_id="CAE35686.1"
FT                   /translation="MMKVLHPTKLVAAATLAFSVLASPLAHASKDVTFAVAIALETLDP
FT                   YNTNSTLNQAAGKAYYEGLFEFDKDLKIQNLLATGYEVSPDGLVYTIKLRDGIKFHDGT
FT                   DFNADAVKANFDRVANPENRLSRYTQFNRVAKTEVVDPHTVRITLKEPFSAFINALAHP
FT                   AAMMISPAALQKYGKEIGFHPVGTGPFKFVEWKPAEYLKVEKFDGYWRKGYPKVDTLTF
FT                   RTVTDNNTRAAVVQTGEAQFAFPIPYEQAAVLAKNDKLDVVDHKNSIMARYLSMNTRVK
FT                   PFDNVKVRQAINYAINKQALAKVAFNGYATVVDGVVPQGVDFAYKIGQWPYDPAKARAL
FT                   LKEAGYPNGFETSLWSAYNDGTSVKVVQFLQQQLAQVGIKASVEVLESGQRVQRVQQVQ
FT                   KPEDAKVRMYYAGWSSSTGEADWGLRPLLSTAAFPPVMNNISYYSNPKVDDSLMKALAT
FT                   TDRSEKAELYKNAQETIWNDAPWAFLVTQNNVYVKSKNLSGVYVEPDTSFWFGDIDLKQ
FT                   "
FT   misc_feature    complement(102386..103897)
FT                   /note="HMMPfam hit to PF00496, DE Bacterial extracellular
FT                   solute-binding proteins, family 5, score 2.6e-76"
FT   misc_feature    complement(103631..103699)
FT                   /note="PS01040 Bacterial extracellular solute-binding
FT                   proteins, family 5 signature."
FT   misc_feature    complement(103847..103930)
FT                   /note="Signal peptide predicted for BB3712 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.989 between residues 28 and 29"
FT   CDS             complement(104001..105902)
FT                   /transl_table=11
FT                   /locus_tag="BB3713"
FT                   /product="putative ABC transporter ATP-binding subunit"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2397"
FT                   /db_xref="GOA:Q7WD65"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD65"
FT                   /protein_id="CAE35687.1"
FT                   /translation="MVDRANSLAMPENRVVQVEDLTVRFVGAERTVEAVRNLSFHVDRG
FT                   ETLAIVGESGSGKSVTSLALMRLVEHGGGRIAQGRIALRRRNGDIVDLGASSQRAMRSV
FT                   RGADMAMIFQEPMTSLNPVFTAGEQIAETIRLHQGKDAAAARAEALRMLEQVRIPEARS
FT                   VMDRHPHQLSGGMRQRVMIAMALACKPALLIADEPTTALDVTIQAQILQLIRQLQEEMR
FT                   MGVVFITHDMGVVAEVADRVLVMYRGDKVEEGPSERIFAQPRHRYTQALLSAVPKLGAM
FT                   QGTDHPARFPLLRVDESAAAEPGPPATPAGPAPAESGPAGERQPILSVRDLITRFDLRG
FT                   GIFSRVQRRVHAVEKVSFDLYPGETLSLVGESGCGKSTTGRSLLRLVDSQGGQVHFGGR
FT                   DITKLKTAELQALRRDIQFVFQDPFASLDPRVTVGFSIMEPLLVHGVASGKQAERRVAE
FT                   LLERVGMPPEMAQRYPHEFSGGQRQRICIARALALDPKVVIADESVSALDVSIQAQIVN
FT                   LLIDLQRDLGIAFLFISHDMAVVERVSHRVAVMYLGQIVEIGPRRAIFENPQHPYTRKL
FT                   MAAVPIADPARRHMSRTLLSDEIPSPIRQLNDEPVVAPLVAVGPDHFVARHSVGGAY"
FT   misc_feature    complement(104244..104816)
FT                   /note="HMMPfam hit to PF00005, DE ABC transporter, score
FT                   3e-56"
FT   misc_feature    complement(104430..104474)
FT                   /note="PS00211 ABC transporters family signature."
FT   misc_feature    complement(104772..104795)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    complement(105159..105770)
FT                   /note="HMMPfam hit to PF00005, DE ABC transporter, score
FT                   5.2e-57"
FT   misc_feature    complement(105345..105389)
FT                   /note="PS00211 ABC transporters family signature."
FT   misc_feature    complement(105726..105749)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             complement(105947..106927)
FT                   /transl_table=11
FT                   /locus_tag="BB3714"
FT                   /product="putative L-asparaginase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2398"
FT                   /db_xref="GOA:Q7WD64"
FT                   /db_xref="HSSP:1K2X"
FT                   /db_xref="InterPro:IPR000246"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD64"
FT                   /protein_id="CAE35688.1"
FT                   /translation="MTQPIIAIHGGAGAISRAAMPADKEKEYLDALARIVAAGQAVLAG
FT                   GGSAIDAVTEAVRLLEDCPLFNAGHGAVFTSAGTHELDAAIMDGATLRSGAIANVDCVR
FT                   NPVRAARAVMEHSKHVFFVGEGAVAFAREHGLELVDPGYFSTEARREQLLRVQRETPGA
FT                   AVLDHDGQALVTQGQPAPADPLDADRKFGTVGAVALDAQGNLAAATSTGGITNKQVGRV
FT                   GDAPLIGAGTYASNRTCAVSTTGTGEMFIRMVAAYDVAAQMEYCGATLAQAADRVVHAK
FT                   LPTIEGKGGLVAVDAHGNVALPFNTEGMYRGHGRVGEPPVVAIYR"
FT   misc_feature    complement(105953..106924)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF01112, DE Asparaginase, score
FT                   6.3e-115"
FT   CDS             complement(106924..107808)
FT                   /transl_table=11
FT                   /locus_tag="BB3715"
FT                   /product="putative transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2399"
FT                   /db_xref="GOA:Q7WD63"
FT                   /db_xref="InterPro:IPR001347"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD63"
FT                   /protein_id="CAE35689.1"
FT                   /translation="MTLPPTSIADRIARAQPAFSRTQHRMAEYVLAHQFRVATMTIDEF
FT                   AVAVGVSVATANRFARVLELPGYPQFRAELARGFESALEPVEKLRIELAHSASAAQVFA
FT                   ATLQEDIHNAQMTLQALDAGACERAVEAILNAERVFIIGFGASGFLAGLLQRGLCMHLH
FT                   AVESLAGPGGVSHAARQMSRMTSRDLVIALAFPRYLADTVTLANAAKLAGVPVLVLTDK
FT                   PTSPLAPCATVALYAHMSRQLSSNAETAALGLIEALSAAVAHRAKNSIAAAAGVAQSVM
FT                   PWLIHGEAGAGKR"
FT   misc_feature    complement(107005..107421)
FT                   /note="HMMPfam hit to PF01380, DE SIS domain, score 0.032"
FT   CDS             complement(108033..108686)
FT                   /transl_table=11
FT                   /locus_tag="BB3716"
FT                   /product="putative coenzyme A transferase subunit"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2400"
FT                   /db_xref="GOA:Q7WD62"
FT                   /db_xref="InterPro:IPR004164"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD62"
FT                   /protein_id="CAE35690.1"
FT                   /translation="MAWSRDEMAARAARELQDGFYVNLGIGLPTLVANHVPKGVEVWLQ
FT                   SENGLLGIGPFPTDDEVDADLINAGKQTVTTLPGSSIFSSADSFAMIRGGKINLAILGA
FT                   MQVSEKGDLANWMIPGKMVKGMGGAMDLVAGVGKVVVLMEHVARKKDGTEDIKLLPECK
FT                   LPLTGVGVVDLIITDLGVMKVTEDGLKLLELAPGVTVDEIKAKTLAKLDVSAVK"
FT   misc_feature    complement(108066..108677)
FT                   /note="HMMPfam hit to PF01144, DE Coenzyme A transferase,
FT                   score 3e-59"
FT   misc_feature    complement(108180..108197)
FT                   /note="PS00343 Gram-positive cocci surface proteins
FT                   'anchoring' hexapeptide."
FT   misc_feature    complement(108531..108557)
FT                   /note="PS01274 CoA transferases signature 2."
FT   CDS             complement(108699..109397)
FT                   /transl_table=11
FT                   /locus_tag="BB3717"
FT                   /product="putative coenzyme A transferase subunit"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2401"
FT                   /db_xref="GOA:Q7WD61"
FT                   /db_xref="HSSP:1K6D"
FT                   /db_xref="InterPro:IPR004163"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD61"
FT                   /protein_id="CAE35691.1"
FT                   /translation="MDKVYASAAEALAGVVKDGQMIAVGGFGLCGIPEALIAALRDSGV
FT                   KGLTCISNNAGVDGFGLGQLLNTRQISKMIASYVGENKEFERQFLSGELELEFTPQGTL
FT                   AEKLRAGGAGIPAFFTRTGVGTVVADGKEIREFDGHQYVMERALVPDVSLVKAHIADRS
FT                   GNLVFRKTARNFNPNVAMAGKMTVVEVEEIVETGTLDPDQVHLPGIYVHRIVVNATPEK
FT                   RIEQRTTRPA"
FT   misc_feature    complement(108744..109388)
FT                   /note="HMMPfam hit to PF01144, DE Coenzyme A transferase,
FT                   score 5e-117"
FT   misc_feature    complement(109299..109346)
FT                   /note="PS01273 CoA transferases signature 1."
FT   CDS             complement(109501..109950)
FT                   /transl_table=11
FT                   /locus_tag="BB3718"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2402"
FT                   /db_xref="InterPro:IPR006683"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD60"
FT                   /protein_id="CAE35692.1"
FT                   /translation="MNRDEHAVRTLEVGDAHQVDIPLRWGDSDCLNHVNNTIYFRMMEE
FT                   ARVRILYEAGYELPGQFGVILAHASCDFLRPLTYPGEVRVTHTVVRIGRSSMDLDLTLE
FT                   KVGEEGEPYARSRNVLVWVNYQTNRAEPWPARLLERMAAQMRPAA"
FT   misc_feature    complement(109522..109860)
FT                   /note="HMMPfam hit to PF03061, DE 4-hydroxybenzoyl-CoA
FT                   thioesterase, score 0.00026"
FT   CDS             110078..111706
FT                   /transl_table=11
FT                   /locus_tag="BB3719"
FT                   /product="putative electron transfer
FT                   flavoprotein-ubiquinone oxidoreductase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2403"
FT                   /db_xref="GOA:Q7WD59"
FT                   /db_xref="InterPro:IPR003042"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD59"
FT                   /protein_id="CAE35693.1"
FT                   /translation="MEYDVVVVGGGPAGLAAAIRLKQLAAEKNHEVSVCVLEKGSELGA
FT                   HILSGAVMDPQALTELIPDWKEKGAPLNVPVTQDKFLFLSATGARSTPNWLLPACFHNE
FT                   GNYIVRLGDVVKWLGEQAEALGVDIFPGFAAAEVLYDENGAVRGVATGDMGVARDGTHT
FT                   DHYQPGMELLARYTLFAEGSRGQLGRQLIGRYKLDEGRNPQSYGIGIKEMWEVDPAQSR
FT                   PGLVVHTAGWPLDSDTYGGSFLYHLDNNVVVVGLIVGLDYANPWLSPFEEFQRYKTHPA
FT                   IRGTFEGGKRIAYGARAITAGGLLSLPKLAFPGGALIGCEAGFLNASRIKGSHAAIKSG
FT                   KMAAEAAFDAVASDRSHDELASYASAFESSWLHAELNKARNFKQWFKKGRTVGTFMTGI
FT                   EQWLLKGKFPWTLRHNKPDHACLQPASQCARIDYPKPDGKLTFDKLSSVFISNTNHEEN
FT                   QPVHLTLKDDSVPVAVNLAKYGGPESRYCPAGVYEFIKDDHGADRLQINAQNCVHCKTC
FT                   DIKDPTQNIVWIAPQGGEGPVYSGM"
FT   CDS             111804..112688
FT                   /transl_table=11
FT                   /locus_tag="BB3720"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2404"
FT                   /db_xref="GOA:Q7WD58"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD58"
FT                   /protein_id="CAE35694.1"
FT                   /translation="MSERVLLAGCGDLGVRVARRLLARGDQVWALRRQPPPAEDGGLRW
FT                   IAADLTQPATLAGLPGGLTQVVYLPAPGARDPARYREIFVDGLRHLRDALDTAALRRTL
FT                   FVSSSAVYGEHDGQWVDEHTPPGPLGFNGRSLLEAERSLGAWPGQAVVLRLAGLYGPGR
FT                   LQLLERLRAGQARAPVDPPHWANRIHIDDAAAAIAHLLRLPAPEPLYLGCDDTPLPLHE
FT                   LYAALATLAGAPPPGEGPAPAQVGSKRLCNARLRASGLQLQWPDSRAGYAALLDGKATL
FT                   QATIHTTTKRSIP"
FT   CDS             112685..113842
FT                   /transl_table=11
FT                   /locus_tag="BB3721"
FT                   /product="putative cytochrome p450 oxidoreductase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2405"
FT                   /db_xref="GOA:Q7WD57"
FT                   /db_xref="InterPro:IPR001128"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD57"
FT                   /protein_id="CAE35695.1"
FT                   /translation="MIADTARQHRGDIMQPADPLEAVAHPDPYPYYAALARERPFYHDD
FT                   RLGLWVAAGPQAIRAVLTCPAARVRPPGEPVPAALGAGPAAQMFGRFIRMNDGAVHERL
FT                   KPMLTAYLTQRTAADLAEPAWPAIGNDPAQVDRYLYQAPVHAQACLMGLPDEVAASCAR
FT                   EIEAFMAACRPGADAAAVARADQAAQALQARMLAHLRAARGDAALGVLRRLALAGGVEA
FT                   DALAANLAGLLLQSCEAGAGLLGNALVHAGRLSPAAAAAAPDLLHTCVEIVTHVARHDP
FT                   PLHNTRRFLAAPATLLGQSVPAGAGILVVLAAAHALAEGAWPWTFGAERHACPGRTPAL
FT                   LHAAQALAHALRHGVDAPALARRVRYRPLPNARVPRFHFPPGDTP"
FT   CDS             113839..114201
FT                   /transl_table=11
FT                   /locus_tag="BB3722"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2406"
FT                   /db_xref="GOA:Q7WD56"
FT                   /db_xref="InterPro:IPR007138"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD56"
FT                   /protein_id="CAE35696.1"
FT                   /translation="MIAVIFEVQPAAEGGRAAYLDIAAGLLPHLRAIDGFISVERFESL
FT                   STPGKLLSLSFWRDEEAVRNWRALAEHRQAQSAGRNGVFQDYRLRVAHVLRDYGMQARD
FT                   QAPPDSRQAHDGPAGG"
FT   misc_feature    113944..113973
FT                   /note="PS00339 Aminoacyl-transfer RNA synthetases class-II
FT                   signature 2."
FT   CDS             complement(114215..115234)
FT                   /transl_table=11
FT                   /gene="ltaE"
FT                   /locus_tag="BB3723"
FT                   /product="low-specificity L-threonine aldolase"
FT                   /EC_number="4.1.2.5"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2407"
FT                   /db_xref="GOA:Q7WD55"
FT                   /db_xref="HSSP:1JG8"
FT                   /db_xref="InterPro:IPR001597"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD55"
FT                   /protein_id="CAE35697.1"
FT                   /translation="MIDLRSDTVTRPSAAMRQAMAAAPVGDDVMGDDPSVRRLQDEVAA
FT                   RAGKEAGLFFPSGTQSNLAALMAHCARGDEYLVGQQAHTYKFEGGGAAVLGSIQPQPVD
FT                   HAADGSLPLDRLAAALKPGGDPHFARTRLLALENTFQGRVMPAGYVAQATGWAREHGLS
FT                   THLDGARVFNAAVASGVPVQQLCEPFDTVSICFSKGLGAPVGSVLVGSRALIEQAHRWR
FT                   KMLGGGMRQAGILAAACLHALHHHVERLALDHDNAARLAAGLDGIDGVRVLGQHTNMVF
FT                   AEFDPARCESLTTALRGQGILMRAVYGGPTRLVTHLDVDADGIDRVVDAVRGHCAAAR"
FT   CDS             complement(115256..116152)
FT                   /transl_table=11
FT                   /locus_tag="BB3724"
FT                   /product="putative integral membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2408"
FT                   /db_xref="GOA:Q7WD54"
FT                   /db_xref="InterPro:IPR000620"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD54"
FT                   /protein_id="CAE35698.1"
FT                   /translation="MNRAAFDRVGLGLMLLTIFVWAGSWIAMKLVVPYIGPFDFIAVRY
FT                   LSGAVVLFSILVATGRPLGMPPWKLTLLAAATQITGFQGFVQTALISGGVGKVSLMAYT
FT                   MPFWVVLFAWALQGERPTARHWGGIALAAVGLVCFLDPWAGLGDLAPVALGLCSGLCWG
FT                   LGTVLSKRMFERHAPDIMTFTAWQMLLGGVVILPFAWLVPQIPAQWGGWRLWLGMSYIV
FT                   LVATALGWILWLLVVRRVPASIAGLSSLGVPVVAVLLAWAILGERPTLTEMAGMALILF
FT                   GLWVVSRAARPAPRAVS"
FT   misc_feature    complement(115289..115675)
FT                   /note="HMMPfam hit to PF00892, DE Integral membrane protein
FT                   DUF6, score 5.4e-28"
FT   misc_feature    complement(join(115292..115345,115358..115426,
FT                   115445..115513,115541..115609,115646..115699,
FT                   115712..115780,115817..115885,115964..116032,
FT                   116057..116125))
FT                   /note="9 probable transmembrane helices predicted for
FT                   BB3724 by TMHMM2.0 at aa 10-32, 41-63, 90-112, 125-147,
FT                   152-169, 182-204, 214-236, 243-265 and 270-287"
FT   misc_feature    complement(115730..116098)
FT                   /note="HMMPfam hit to PF00892, DE Integral membrane protein
FT                   DUF6, score 3.7e-18"
FT   misc_feature    complement(116087..116152)
FT                   /note="Signal peptide predicted for BB3724 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.715) with cleavage site
FT                   probability 0.591 between residues 22 and 23"
FT   CDS             complement(116298..118343)
FT                   /transl_table=11
FT                   /locus_tag="BB3725"
FT                   /product="acetyl-coenzyme A synthetase"
FT                   /EC_number="6.2.1.1"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2409"
FT                   /db_xref="GOA:Q7WD53"
FT                   /db_xref="InterPro:IPR000873"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD53"
FT                   /protein_id="CAE35699.1"
FT                   /translation="MAIRLRVGKKNGSTRIIHRRHTMSNAIQSVLVENRVFPPPASAVQ
FT                   GAAISGMDAYWALCEEADKDFNGFWSRLARENLQWSKPFTQVLDESEAPFYRWFGDGEL
FT                   NVSANCLDVHLHNGNADKTAIIFESDDGKVDKISYRELLARVCRFANGLKAMGYKKGDR
FT                   AIIYMPMSIEAVVAMQACARLGVTHSVVFGGFSAKSLQERIVDVGATVVITADEQVRGG
FT                   KTIPLKPAVEEAFAMGGCEAVSKVVVYRRTGGKIAWQEGRDVWMHDVEAGQADTCEPQA
FT                   VNAEHPLFILYTSGSTGKPKGVQHASAGYLLWALLTMKWTFDARADDVYWCTADVGWVT
FT                   GHTYITYGPLAAGVTQVVFEGVPTFPNAGRFWDMIARHKVSVFYTAPTAIRSLIKAAEA
FT                   NQEVHPRQYDLDSLRIIGSVGEPINPEAWIWYHKNVGRERCPVVDTWWQTETGGHMLTP
FT                   LPGATPLKPGSCTLPLPGIVAAIVDETGGDVAQGNGGFLVIKRPWPAMIRNIWGDPERF
FT                   KKSYFPPELRGYYLAGDGAQRDADGYFWIMGRIDDVLNVSGHRLGTMEVESALVAHEMV
FT                   AEAAVVGRPDDTTGEAVVAFVVLKRSRPEGDEAQAIARQLRDWVGKEIGPIAKPKDIRF
FT                   GDNLPKTRSGKIMRRLLRVVAKGEEITQDVSTLENPAILEQLAKPL"
FT   misc_feature    complement(116601..117932)
FT                   /note="HMMPfam hit to PF00501, DE AMP-binding enzyme, score
FT                   5.2e-125"
FT   misc_feature    complement(117441..117476)
FT                   /note="PS00455 Putative AMP-binding domain signature."
FT   CDS             complement(118489..119829)
FT                   /transl_table=11
FT                   /locus_tag="BB3726"
FT                   /product="putative integral membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2410"
FT                   /db_xref="InterPro:IPR011701"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD52"
FT                   /protein_id="CAE35700.1"
FT                   /translation="MTYPLPPAGDPPGGGAAADAGALPALNPGVTRREVWAWAMYDFAN
FT                   SGYTTVILTTVFSTYFVSVVGGRAHWATLAWTAALSLSYLAIMLTMPTLGARADARAGK
FT                   RRLLYTSTLGCVAATLVLTQAGPGDVWLALAAVALSNYCYCIGESVVAAFLPELARPHA
FT                   LGRVSGWGWSFGYCGGMLALGLSLAVVTLGEARGLDAPQYVPWVIVVTSAIFAISALPS
FT                   FFLLRERAVPHAVALQAPDMLGRLRRAWQDTGAHYPEFRRLLMCGACYQAGIAVVITLA
FT                   AVYAEQAMGFTMPQIMLLVFTVNIAAAAGAFGFGYLQDRIGHKRALALTLAGWIAMVLV
FT                   AYAAVTAPVFWVAAVLAGLCMGTSQSAGRAMTGALAPAGRLAEFFALWTFAIQLAAVVG
FT                   PLTYGLVTWLTAGNHRLAILVTGLFFVGGLILLTRVDMARGIARRAA"
FT   misc_feature    complement(118522..119727)
FT                   /note="HMMPfam hit to PF00083, DE Sugar (and other)
FT                   transporter, score 0.0062"
FT   misc_feature    complement(join(118525..118584,118612..118680,
FT                   118717..118785,118795..118854,118879..118947,
FT                   118975..119043,119152..119220,119263..119331,
FT                   119368..119436,119452..119511,119548..119616,
FT                   119659..119727))
FT                   /note="12 probable transmembrane helices predicted for
FT                   BB3726 by TMHMM2.0 at aa 35-57, 72-94, 107-126, 132-154,
FT                   167-189, 204-226, 263-285, 295-317, 326-345, 349-371,
FT                   384-406 and 416-435"
FT   CDS             complement(119826..120233)
FT                   /transl_table=11
FT                   /locus_tag="BB3727"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2411"
FT                   /db_xref="InterPro:IPR005624"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD51"
FT                   /protein_id="CAE35701.1"
FT                   /translation="MKTKPVLVADDVKKILAAAEAHALANKWAVTIAVVDDGGHLLGQL
FT                   RLDGAAPISAHIAPAKAGTAALGRRESRVYEEIINNGRQAFLSAPLLEGMLEGGVPVTV
FT                   DGEVVGAVGVSGVKSSEDAEIARAGIAALGL"
FT   misc_feature    complement(119835..120224)
FT                   /note="HMMPfam hit to PF03928, DE Domain of unknown
FT                   function (DUF336), score 2e-43"
FT   CDS             complement(120230..122119)
FT                   /transl_table=11
FT                   /gene="prpE"
FT                   /locus_tag="BB3728"
FT                   /product="propionate--CoA ligase"
FT                   /EC_number="6.2.1.17"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2412"
FT                   /db_xref="GOA:Q7WD50"
FT                   /db_xref="InterPro:IPR018039"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD50"
FT                   /protein_id="CAE35702.1"
FT                   /translation="MKKTRDFHYRSIHDRDGFWREEAGRIHWETPFEQVIDYSRPPFAR
FT                   WFVGGRTNLCYNAVDRWLPQQADQPALIWVSTEVDQERVYTRQQLHDEVNAVAAMLREQ
FT                   GVERGDRVLLYMPMVPEAVFAMLACARIGAIHSVVFGGFASVNLAQRIDDAAPKVVVST
FT                   DGGSRAGKVVAYKPLLDRALALCQKPPGAVIILDRGLTPCERQAGRDLDYAELRARHEG
FT                   ARVPVQWLESSEPSYILYTSGTTGRPKGVQRDTGGYAVALASSMEYLFDGKPGDTYFCT
FT                   SDIGWVVGHSYIVYGPLIGGQTTILYEGTPVRPDGAILWQLVERFGVNTLFSAPTAVRV
FT                   LKRQDAALLRRHDLSTLRAVYLAGEPLDEPTAQWISQGLGKPIIDNYWQTESGWPILSA
FT                   QPGVERVPTRFGSPSFPVYGFDARIVSESTGEDLGPDEKGVVAIVPPLPPGAMSTIWGD
FT                   DERFVQTYFTSIPGRQVYSTFDWGLVDPDGYWFILGRTDDVINVAGHRLGTREIEESIN
FT                   SHAGVAECAVVGVADTLKGQVAMAFAVLKDPAGAETRDGALALEGDIMRVVEDQLGAVA
FT                   RPARIRFVGALPKTRSGKVLRRAIVAVCEGRDPGDLTTIEDPSALEQIKESLQ"
FT   misc_feature    complement(120539..121864)
FT                   /note="HMMPfam hit to PF00501, DE AMP-binding enzyme, score
FT                   6.1e-105"
FT   misc_feature    complement(121373..121408)
FT                   /note="PS00455 Putative AMP-binding domain signature."
FT   misc_feature    complement(121580..121606)
FT                   /note="PS00226 Intermediate filaments signature."
FT   CDS             122344..123012
FT                   /transl_table=11
FT                   /locus_tag="BB3729"
FT                   /product="putative lipoprotein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2413"
FT                   /db_xref="InterPro:IPR000064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD49"
FT                   /protein_id="CAE35703.1"
FT                   /translation="MRRMHRHSNPALPERNISLSSRGLRLLAVVACAVGLAGCAGTGAK
FT                   KTSYTFESDPYDTEWVASADDPIGILVTQKLKRDRRAGQSQTSGENPLVSEALGQLGVR
FT                   YRFGGISPDTGFDCSGLVAYTAERSLGLKLPRISADIARWGTNIDRKELRPGDLVFFNT
FT                   LGRRYSHVGIYMGENRFIHSPSSGGVVRVENMTVAYWAKRYNGARRIDDSRLASARASN
FT                   "
FT   misc_feature    122344..122475
FT                   /note="Signal peptide predicted for BB3729 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.982) with cleavage site
FT                   probability 0.688 between residues 44 and 45"
FT   misc_feature    122428..122460
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    122632..122973
FT                   /note="HMMPfam hit to PF00877, DE NLP/P60 family, score
FT                   1.7e-43"
FT   CDS             complement(123147..123458)
FT                   /transl_table=11
FT                   /locus_tag="BB3730"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2414"
FT                   /db_xref="InterPro:IPR016772"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD48"
FT                   /protein_id="CAE35704.1"
FT                   /translation="MTAGLSAVVVGADRLGNIPDLLKGHNISITHHISGRDPSHQKKTL
FT                   QLPSGTQLVILLTDFLGHNVMKTFRHAAQRGGIRVVACRRSVCSMQQALHQCGLCARS"
FT   CDS             complement(123674..124618)
FT                   /transl_table=11
FT                   /locus_tag="BB3731"
FT                   /product="putative LysR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2416"
FT                   /db_xref="GOA:Q7WD47"
FT                   /db_xref="HSSP:1AL3"
FT                   /db_xref="InterPro:IPR005119"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD47"
FT                   /protein_id="CAE35705.1"
FT                   /translation="MNLQQFRFVRETIRRDFNLTEAARMLYTSQPGVSKAIIEFEDELG
FT                   IKIFERHGKRIKGLTKPGLAVSQVIDRIMREVDNLKKVSDEFARRDEGGLVIACTHTQA
FT                   RYLLPRVIPAFRKQFPKVHLSLAEGSPSQLAEMVLHEQADLALATESLALTPGLATLPV
FT                   YTWEHTVVVRPDHPLTELTSSQARRLTLAQLAEYPIVTYDRAFTGRTTIDEIFANQGIH
FT                   PDIVLEAIDADVIKTYVDVGLGIGIIAGVAYDPRRDANLVGLPVGHLFGTHTTRVGVKS
FT                   GVFLRDYVYTFMEMMAPGLTRQVVSEAVQGGPA"
FT   misc_feature    complement(123716..124357)
FT                   /note="HMMPfam hit to PF03466, DE LysR substrate binding
FT                   domain, score 7e-39"
FT   misc_feature    complement(124427..124612)
FT                   /note="HMMPfam hit to PF00126, DE Bacterial regulatory
FT                   helix-turn-helix protein, lysR family, score 1.8e-10"
FT   misc_feature    complement(124475..124567)
FT                   /note="PS00044 Bacterial regulatory proteins, lysR family
FT                   signature."
FT   CDS             complement(124718..126211)
FT                   /transl_table=11
FT                   /locus_tag="BB3732"
FT                   /product="putative oxidoreductase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2417"
FT                   /db_xref="GOA:Q7WD46"
FT                   /db_xref="HSSP:1CW3"
FT                   /db_xref="InterPro:IPR016162"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD46"
FT                   /protein_id="CAE35706.1"
FT                   /translation="MSEVHRLPLLIGGKLVQSKTTQWRDVINPATQEVVAQVPFATREE
FT                   LDLAVANAKEAFKTWRNTGQGARMRVMLKLQQLLRDNTGKLAEMITREHGKTLPDAEGE
FT                   VGRGLEVVEHACSIANLQLGEYAENAAGGIDVYTLIQPLGVCAGITAFNFPVMLPCFMF
FT                   PIAVACGNTFVLKPSEQDPSSSLFLAQLALEAGLPPGVLNVVHGGPDIANGLCEHPDIK
FT                   AVSFIGSTRVGTEIYNRASAAGKRCQSMMGAKNHCVILPDADPEVALNQLVGAAFGAAG
FT                   QRCMATSVAVMVGEARNWLPDFVERARKLKVNNGVDREADLGPLVSPAAKQRVEGLIQK
FT                   GVDEGAKLLLDGRSLKVAGFEQGNFVGPTIFDGVTENMTIYTEEVFGPVLCVVGVDTLE
FT                   DAVEFINRNPNGNGVALFTQDGGAARYFQNNIDVGQVGINIPIPVPVAWFSFTGSRGSK
FT                   LGDLGPNGKQAVQFWTQTKTVTARWSAHGRGVNTTISMK"
FT   misc_feature    complement(124763..126172)
FT                   /note="HMMPfam hit to PF00171, DE Aldehyde dehydrogenase
FT                   family, score 7e-175"
FT   misc_feature    complement(125348..125383)
FT                   /note="PS00070 Aldehyde dehydrogenases cysteine active
FT                   site."
FT   CDS             complement(126308..127525)
FT                   /transl_table=11
FT                   /locus_tag="BB3733"
FT                   /product="putative ABC transport protein, substrate-binding
FT                   component"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2418"
FT                   /db_xref="InterPro:IPR001828"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD45"
FT                   /protein_id="CAE35707.1"
FT                   /translation="MKSRARGFAAGLCLGAMLVGQAMAADKPPVKIGILTDMSGTYAGM
FT                   GGPGSVAAAQLAIDDCLAAECKGMKIDLVSADNQNKTDVGAAKAREWFDRDGVTAIADL
FT                   TNSAVALAVQGIAREKNKVVMFSGPAATALTNQDCSPLGFHWMFDTYSQSAGGAKATVR
FT                   AGGKSWYFITVDYAFGHSLEADTAKAVQALGGTVAGSVRHPLNAPDFASYLLQAQSSKA
FT                   QVVALANGGQDTVNAVKQAREFGIVEGGQRLVSLLVFLSDLRALGLDNAQGLSYVDGFY
FT                   WDYDDATRQWSARFEKAFRGLKPTMVQAGVYSSVLHYLRAVAASGSTDGKVVADKMREL
FT                   PVKDPIMRNASIRPDGRVIHDMYLYEVKKPAESKGGWDYSKLVATIPAAEAFQPLAEST
FT                   CPLVKK"
FT   misc_feature    complement(127451..127507)
FT                   /note="1 probable transmembrane helix predicted for BB3733
FT                   by TMHMM2.0 at aa 7-25"
FT   misc_feature    complement(127454..127525)
FT                   /note="Signal peptide predicted for BB3733 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 1.000 between residues 24 and 25"
FT   CDS             127665..128585
FT                   /transl_table=11
FT                   /locus_tag="BB3734"
FT                   /product="probable LysR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2419"
FT                   /db_xref="GOA:Q7WD44"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD44"
FT                   /protein_id="CAE35708.1"
FT                   /translation="MLDWDSLRYFLEVARTQRVSAAARKLGVEHTTVARRVRALEAELD
FT                   SLLFEKSRSAGYVLTEDGQRLFVFAEQMESTVHTARENLSGIGQALSGHVRIGATEGFG
FT                   SYVLTPLAADFQRRYPHITLDILPVPRFVSLSKREADLAITIERPQRGPYVCTKLCDYT
FT                   LMLYGTPAYLARHAPIRERADLAGHNFIGYVDELLFSERLRYLEDVLPNSQVVLRSTSV
FT                   IAQYHAALQGQSLAILPCFIAAQDPRLTPVLPDDIAITRSFWMYCHEDLRRLKRVSALW
FT                   EFMRRSVMRNAALLQGRGAALQYLP"
FT   misc_feature    127674..127856
FT                   /note="HMMPfam hit to PF00126, DE Bacterial regulatory
FT                   helix-turn-helix protein, lysR family, score 9.5e-13"
FT   misc_feature    127716..127808
FT                   /note="PS00044 Bacterial regulatory proteins, lysR family
FT                   signature."
FT   misc_feature    127926..128531
FT                   /note="HMMPfam hit to PF03466, DE LysR substrate binding
FT                   domain, score 2e-40"
FT   CDS             complement(128582..129694)
FT                   /transl_table=11
FT                   /locus_tag="BB3735"
FT                   /product="putative integral membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2420"
FT                   /db_xref="GOA:Q7WD43"
FT                   /db_xref="InterPro:IPR005495"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD43"
FT                   /protein_id="CAE35709.1"
FT                   /translation="MSLFKRSVVSEITSHAGVVFSTLVVVWLSVLLVRLLGEAAGGSIG
FT                   ADVVLGLAAFSTITALPTILAVSLFIAVLTTVTRNYRESEMVVWFASGLSLADWLRPVA
FT                   RVAVPIAMLVAALTLVASPWAYRQIGEYRERFEQRSDLSKVTAGQFAESGRGDRVFFAE
FT                   DPVRPGDELGAVFARSIDPEWLSVLTASNARSETLPNGDRFLVLGEGHRYDLKPGTPEI
FT                   RLVNFDQYGVRLESKAGEDPMAEARAAAERSSKARSTMQLVQDNTDSSWSQIMWRVAMP
FT                   LAALNLALLAIPLGAVNPRLGRSGDLLIAGLVGLLYMNMINLSRAWISSGKISFSIGVW
FT                   AVHAVVALLAAYLLMRRLRVKAPRNAGRGA"
FT   misc_feature    complement(128612..129679)
FT                   /note="HMMPfam hit to PF03739, DE Predicted permease
FT                   YjgP/YjgQ family, score 1.4e-41"
FT   misc_feature    complement(join(128630..128698,128708..128776,
FT                   129320..129388,129482..129550,129584..129652))
FT                   /note="5 probable transmembrane helices predicted for
FT                   BB3735 by TMHMM2.0 at aa 15-37, 49-71, 103-125, 307-329 and
FT                   333-355"
FT   CDS             129748..131247
FT                   /transl_table=11
FT                   /gene="pepA"
FT                   /locus_tag="BB3736"
FT                   /product="cytosol aminopeptidase"
FT                   /EC_number="3.4.11.1"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2421"
FT                   /db_xref="GOA:Q7WD42"
FT                   /db_xref="HSSP:1GYT"
FT                   /db_xref="InterPro:IPR008283"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WD42"
FT                   /protein_id="CAE35710.1"
FT                   /translation="MEFSTQTTASLHQIKTAALAVGVFADGVLSAAAEVIDRASHGAVA
FT                   AVVKSEFRGRTGSTLVLRSLAGVSAQRVVLVGLGKQAEYNARAHASAEQAFAAACVAAQ
FT                   VGEGVSTLAGVAIEGVPVRARARSAAIAAGAAAYHYDATFGKANRDARPRLKKIVQVVD
FT                   RAASAQAQLGLREGAAIAHGMELTRTLGNLPGNVCTPAYLGNTAKKLAREFKSLKVEVL
FT                   ERKQVEALGMGSFLSVARGSEEPLRFIVLRHAGKPAKKDKAGPVVLVGKGITFDAGGIS
FT                   LKPAATMDEMKYDMCGAASVLGTFRALAELELPLDVVGLIAACENLPSGKANKPGDVVT
FT                   SMSGQTIEILNTDAEGRLVLCDALTYAERFKPAAVIDIATLTGACVVALGNVNSGLFSK
FT                   DDALADALLAASRQSLDPAWRLPLDDAYQDQLKSNFADIANIGGPPAGAVTAACFLSRF
FT                   TKAYPWAHLDIAGTAWRGGKDKGATGRPVPLLMQYLLDQAG"
FT   misc_feature    129748..129843
FT                   /note="Signal peptide predicted for BB3736 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.896) with cleavage site
FT                   probability 0.523 between residues 32 and 33"
FT   misc_feature    129793..130194
FT                   /note="HMMPfam hit to PF02789, DE Cytosol aminopeptidase
FT                   family, N-terminal domain, score 1e-12"
FT   misc_feature    130297..131223
FT                   /note="HMMPfam hit to PF00883, DE Cytosol aminopeptidase
FT                   family, catalytic domain, score 9.5e-174"
FT   misc_feature    130798..130821
FT                   /note="PS00631 Cytosol aminopeptidase signature."
FT   CDS             131265..131720
FT                   /transl_table=11
FT                   /locus_tag="BB3737"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2422"
FT                   /db_xref="GOA:Q7WD41"
FT                   /db_xref="InterPro:IPR007459"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD41"
FT                   /protein_id="CAE35711.1"
FT                   /translation="MTRIDFAFGAPDRLRAACRTARKRFQAGQRLVVYCADGGRLAAFD
FT                   RMLWALEDVSFVPHVLANDALAADTPVLLTAGDPAAALALATTGDSRPWLLNLDDGCPP
FT                   NFDGYERLLEIVSDDPADRQAARQRWRDYQNAGHALHSHDLSRAGEA"
FT   CDS             131751..132077
FT                   /transl_table=11
FT                   /locus_tag="BB3738"
FT                   /product="hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2423"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD40"
FT                   /protein_id="CAE35712.1"
FT                   /translation="MPHHYSDSSIPTLTDRVEPGLGSPQAPAAIPRLSEQASAPPVSHE
FT                   SGAASAPDTPFQPGDAVLRAVLQAELEETLTAAIDEAVAGIRARLDAELPAILAQVMRN
FT                   VRPG"
FT   CDS             132177..132887
FT                   /transl_table=11
FT                   /locus_tag="BB3739"
FT                   /product="putative integral membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2424"
FT                   /db_xref="GOA:Q7WD39"
FT                   /db_xref="InterPro:IPR006214"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD39"
FT                   /protein_id="CAE35713.1"
FT                   /translation="MNETRPSPFNRSGAYAGAPGEVVRNKVLRNTYWLLALSLVPTVLG
FT                   AAVGLYTGINQVMGASPGLSAIVFLVGAFGLMFAIEKNKNNSLGVVLLLAFTFFMGVML
FT                   SRLLGFVLGMGNGAQLVMTAFGGTAIVFGTMATLATTIKRDLSGMQKWLFTGAVVILVA
FT                   ALANIFLQMPALMLTISVLAIVIFSAFMLVDLQRVINGGETNYVSATLAIYLDVYNVFS
FT                   NLLMLLGIFGGDRE"
FT   misc_feature    join(132270..132338,132351..132419,132438..132506,
FT                   132534..132593,132630..132686,132696..132755,
FT                   132792..132860)
FT                   /note="7 probable transmembrane helices predicted for
FT                   BB3739 by TMHMM2.0 at aa 32-54, 59-81, 88-110, 120-139,
FT                   152-170, 174-193 and 206-228"
FT   misc_feature    132306..132872
FT                   /note="HMMPfam hit to PF01027, DE Uncharacterized protein
FT                   family UPF0005, score 1.7e-26"
FT   CDS             132949..134022
FT                   /transl_table=11
FT                   /locus_tag="BB3740"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2425"
FT                   /db_xref="GOA:Q7WD38"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD38"
FT                   /protein_id="CAE35714.1"
FT                   /translation="MPEAGQVFDLSEQPFDCTKQQTPLPLAQWRHHHHYDRGIAMYLRY
FT                   ALAGALTLACSGVQAEDFPARAITMIVPAAAGGNADITARLVGQEMSKQLGQPVVIENR
FT                   VGAGGRIGTQAVVRAAPDGYTIGYAHVGTLVLHRFLFKEQMYDIDKDLAPIGLVAETPN
FT                   VIVVSQASPYRTLQDLIGASKAQPDRITMTSADPGTTSEVGVKLFIAQTGAGVRQIPYK
FT                   ATAAQLADLLGGHVDSMMENLPPLIGNLKDGRLRALAVTTRKRVASNPDVPTVAEQGYP
FT                   DYEQGAWSALVAPAGTPPEALARLNQALNAALAAPAVSAELRSRSQEPLGGPPAQVQAQ
FT                   VDKELPKWRSVIQAANP"
FT   misc_feature    133081..133113
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    133195..134016
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF03401, DE Uncharacterized protein
FT                   family, UPF0065, score 7e-85"
FT   CDS             134019..134999
FT                   /transl_table=11
FT                   /locus_tag="BB3741"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2426"
FT                   /db_xref="GOA:Q7WD37"
FT                   /db_xref="InterPro:IPR007036"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD37"
FT                   /protein_id="CAE35715.1"
FT                   /translation="MTRTSRADFSCAAATNRSAYRRVTVPVLRIEAGAGPAVLLMAGVH
FT                   GDEWEGQAALLELWHALPGLLRRGTVYVAPAANAEASLAGTRLSPADGGNLNRAFLGAP
FT                   ARGYTEAVAHALQTRILPQVQYMIDVHSGGASLRYLPATVITRYGDDPWDERVARLARG
FT                   FGLARCLFFRGVETGSMPAAASRLGVARLSAEIGGGAETSQELVRLCRDGMLSCLAGLD
FT                   MVDAHHAMPGPLEAFHDVDAPRASMRADAPGVFIPSVALGQQVAAGQQVGTLCEPARPD
FT                   RPPLALASPQDGTVVCLRALARSDDGDCLLQIAPARPFETLSTLY"
FT   CDS             135003..136103
FT                   /transl_table=11
FT                   /locus_tag="BB3742"
FT                   /product="threonine synthase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2427"
FT                   /db_xref="GOA:Q7WD36"
FT                   /db_xref="HSSP:1O58"
FT                   /db_xref="InterPro:IPR001926"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD36"
FT                   /protein_id="CAE35716.1"
FT                   /translation="MLMNPSLSRLRCLRCSHAVPPGDYPEGCPRCLAAGYPASLACEYE
FT                   PADTQPMPLPVLAPITLGEGRTPCLDAPALAHAHGVAQVWLKCESGNPTGSHKDRMAAQ
FT                   LVSRAVLAGAKRLAAASSGNAGVALAAYGAAAGLRVDIAIAPTCPPRQRAAMEQFGARL
FT                   HSFADSLARWPYVATLCRDEGAFAGTNYLNPPVGTHPYGVEGYKPIAAELAAQCDNLPT
FT                   DIIVPTARGDLLWGICLGWQALLRRGAIARLPRLHAVEPYPRLAHALAAGDARGVWEQP
FT                   TAQYSIAGGTVTLQSMQALARSGGRAVDVADEQAARARAALGALGIAAELSSAAALAAV
FT                   PALKAAGALDAGSRVALILTSDGRRD"
FT   misc_feature    135180..136088
FT                   /note="HMMPfam hit to PF00291, DE Pyridoxal-phosphate
FT                   dependent enzyme, score 6.4e-26"
FT   CDS             complement(136100..137020)
FT                   /transl_table=11
FT                   /locus_tag="BB3743"
FT                   /product="LysR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2428"
FT                   /db_xref="GOA:Q7WD35"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD35"
FT                   /protein_id="CAE35717.1"
FT                   /translation="MTFTLRQVETFRTVYETESVTAAARRLDVSPATVSATLAALETAI
FT                   SMRLFERVRQRMVRTPEADLLYEEIRRQSLGLETLGRKIRAIKGAGQPRLRVGTIHAYS
FT                   GLVIEQALVRFRGRYPDTPLYLQVRDSNTLRDMVVAGELDLALVADESELQGLRGHCLA
FT                   RLGAVAVFPRGHALARFAQLELSQLADAALVLLNREDGSRKRLDAVFAQRGIAPHAAIE
FT                   TPYSSTVCQLALAGHGVGIANPATAMGMAQAGLEFRPLDADVHFACYMILHGSRPLSNA
FT                   GKYWATCQRAALAPLVEQFGVDAQV"
FT   misc_feature    complement(136139..136759)
FT                   /note="HMMPfam hit to PF03466, DE LysR substrate binding
FT                   domain, score 6.8e-36"
FT   misc_feature    complement(136829..137008)
FT                   /note="HMMPfam hit to PF00126, DE Bacterial regulatory
FT                   helix-turn-helix protein, lysR family, score 1.3e-15"
FT   misc_feature    complement(136874..136966)
FT                   /note="PS00044 Bacterial regulatory proteins, lysR family
FT                   signature."
FT   CDS             complement(137040..137627)
FT                   /transl_table=11
FT                   /locus_tag="BB3744"
FT                   /product="hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2429"
FT                   /db_xref="GOA:Q7WD34"
FT                   /db_xref="InterPro:IPR003717"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD34"
FT                   /protein_id="CAE35718.1"
FT                   /translation="MSRRAQRVHDIPGYMLHATAWRETSLIVQAFSREYGCIALVAKGA
FT                   KRPYSVLRPVLSAFQPLLLSWSGAGEVKTMTRAEIAGVRPLGGPALMSAWYMNELLLRL
FT                   LPREDAHPVLYDAYDTALTQLSAGSRAAGALRRFEWILLRETGYGLDEAEPDFNDPAIE
FT                   PALRRDLRERLEANLAGRPLSTRKVLLELQRL"
FT   misc_feature    complement(137049..137612)
FT                   /note="HMMPfam hit to PF02565, DE Recombination protein O,
FT                   score 5.4e-05"
FT   CDS             complement(137620..138510)
FT                   /transl_table=11
FT                   /locus_tag="BB3745"
FT                   /product="GTP-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2430"
FT                   /db_xref="GOA:Q7WD33"
FT                   /db_xref="HSSP:1EGA"
FT                   /db_xref="InterPro:IPR005225"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WD33"
FT                   /protein_id="CAE35719.1"
FT                   /translation="MSNPQFRAGFVAIVGRPNVGKSTLTNALIGTKISIVSRKAQTTRH
FT                   RIHGVLTREHEQFVFVDTPGFQTRHGGAMNRMMNRVVTQALADVDVVVHVVEAGKWSEG
FT                   DAKLLPLLPKSRRSILVVSKIDALKNRDELFPFVSKLMALHAYDAVVPVSATKGQQLDQ
FT                   LLDEIAAGLPQGDPMFEEDTLTDRPVRFIAAELVREKIFRLVGDELPYGCTVVIEQWEE
FT                   TERGVRIAACVVVERESHRPILLGAGGMHMKRIATEARQDIAKLLDMPVHLEIYIKVRK
FT                   GWSDREGALRDLGYE"
FT   misc_feature    complement(138445..138468)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             complement(138507..139277)
FT                   /transl_table=11
FT                   /gene="rnc"
FT                   /locus_tag="BB3746"
FT                   /product="ribonuclease III"
FT                   /EC_number="3.1.26.3"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2431"
FT                   /db_xref="GOA:Q7WD32"
FT                   /db_xref="HSSP:1JFZ"
FT                   /db_xref="InterPro:IPR014720"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WD32"
FT                   /protein_id="CAE35720.1"
FT                   /translation="MTAMSLATLETRLDHRFGDKALLEQALTHRSHGARHNERLEFLGD
FT                   SVLNFVVAAMLFERYGKLDEGDLSRLRANLVKQASLADIAQRLDLSQYLRLGEGELKSG
FT                   GFRRPSILADTVEALFGAVFLDAGFEAARRVIVRQYQPVMAHVDPKTLGKDAKTLLQEF
FT                   LQGRKLALPQYTVVATHGAAHSQQFEVECAIPALEIKIVAPGASRRAAEQSAAKVALEA
FT                   AQAVLPAARAARKSGKARKTAQLSLPVAVAQEVK"
FT   misc_feature    complement(138609..138812)
FT                   /note="HMMPfam hit to PF00035, DE Double-stranded RNA
FT                   binding motif, score 1.8e-12"
FT   misc_feature    complement(138894..139166)
FT                   /note="HMMPfam hit to PF00636, DE RNase3 domain, score
FT                   2.5e-43"
FT   misc_feature    complement(139140..139166)
FT                   /note="PS00517 Ribonuclease III family signature."
FT   CDS             complement(139274..140158)
FT                   /transl_table=11
FT                   /gene="lep"
FT                   /locus_tag="BB3747"
FT                   /product="signal peptidase I"
FT                   /EC_number="3.4.21.89"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2432"
FT                   /db_xref="GOA:Q7WD31"
FT                   /db_xref="HSSP:1B12"
FT                   /db_xref="InterPro:IPR019533"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD31"
FT                   /protein_id="CAE35721.1"
FT                   /translation="MSWNFALILFVLLVITGVIWGLDLALFRKRRERRAQAAAAQVDAA
FT                   GITDAEQAGRERREAIDAARRAPWWIEYAVSFFPVILFVFVLRSFVVEPFRIPSGSMLP
FT                   TLQSGDLILVNKFSYGIRLPIIDRKIIETGSLERGDVVVFRYPVDTDVDYIKRIVGLPG
FT                   DQVAYLDKKLYINGKLVPHERDGDYFEPDRVSYIAQYKEKLGEVEHKILLDEQKMQDFG
FT                   PIWKFPGIQNCQYARNGVRCTVPPGHYFAMGDNRDNSADSRYWGFVPDGNIVGKAFFVW
FT                   MNFSDLSRIGRFH"
FT   misc_feature    complement(139334..140002)
FT                   /note="HMMPfam hit to PF00461, DE Signal peptidase I, score
FT                   3.3e-66"
FT   misc_feature    complement(139373..139414)
FT                   /note="PS00761 Signal peptidases I signature 3."
FT   misc_feature    complement(139655..139693)
FT                   /note="PS00760 Signal peptidases I lysine active site."
FT   misc_feature    complement(139841..139864)
FT                   /note="PS00501 Signal peptidases I serine active site."
FT   misc_feature    complement(join(139883..139951,140078..140146))
FT                   /note="2 probable transmembrane helices predicted for
FT                   BB3747 by TMHMM2.0 at aa 5-27 and 70-92"
FT   misc_feature    complement(140096..140158)
FT                   /note="Signal peptide predicted for BB3747 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.977) with cleavage site
FT                   probability 0.964 between residues 21 and 22"
FT   CDS             complement(140181..141974)
FT                   /transl_table=11
FT                   /gene="lepA"
FT                   /locus_tag="BB3748"
FT                   /product="GTP-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2433"
FT                   /db_xref="GOA:Q7WD30"
FT                   /db_xref="InterPro:IPR004161"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WD30"
FT                   /protein_id="CAE35722.1"
FT                   /translation="MQHIRNFSIIAHIDHGKSTLADRLIHRCGGLAEREMSAQVLDSMD
FT                   IERERGITIKAQTASLQYKSQDGTVYNLNLIDTPGHVDFSYEVSRSLSACEGALLVVDA
FT                   SQGVEAQTVANCYTAIELGVEVLPVLNKMDLPQADPEAARQEVEDVIGIDASEAVLASA
FT                   KTGMGIDEILESIVARVPPPKGDPSAPLQALIIDSWFDNYVGVVMLVRIVNGVLKPKDK
FT                   ILLMASHATHLCEQIGVFTPKSQPRPELSAGEVGFVIAGIKELEHAKVGDTITLAGKPA
FT                   AEPLPGFKEVKPQVFAGLYPVESSEYDQLRDSLEKLKLNDAALMFEPEVSQALGFGFRC
FT                   GFLGLLHMEIVQERLEREFDMDIITTAPSVVYEVEQRDGTVVTIESPSRMPEIAKIADI
FT                   REPIVKVTLFMPQEYVGPVMTLCNNKRGVQLNMSYHGRQVHLTYEIPLAEIVLDFFDKL
FT                   KSVSRGYASMDYEFVEYRSADVVKVDLLINGDRVDALAMIAHRNNARYRAREVVSRMRG
FT                   LIPRQMFDVAIQAAIGAEVIARENVKALRKNVLAKCYGGDISRKKKLLEKQKAGKKRMK
FT                   QVGSVEIPQEAFLAILQVEDK"
FT   misc_feature    complement(140517..140783)
FT                   /note="HMMPfam hit to PF00679, DE Elongation factor G
FT                   C-terminus, score 1.1e-36"
FT   misc_feature    complement(141150..141398)
FT                   /note="HMMPfam hit to PF03144, DE Elongation factor Tu
FT                   domain 2, score 3.3e-13"
FT   misc_feature    complement(141423..141971)
FT                   /note="HMMPfam hit to PF00009, DE Elongation factor Tu GTP
FT                   binding domain, score 1.7e-70"
FT   misc_feature    complement(141804..141851)
FT                   /note="PS00301 GTP-binding elongation factors signature."
FT   misc_feature    complement(141921..141944)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             complement(142105..143592)
FT                   /transl_table=11
FT                   /gene="mucD"
FT                   /locus_tag="BB3749"
FT                   /product="serine protease"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2434"
FT                   /db_xref="GOA:Q7WD29"
FT                   /db_xref="InterPro:IPR011782"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD29"
FT                   /protein_id="CAE35723.1"
FT                   /translation="MKAITVSNLFFRRFGAAALVAFMAVTAAGTQVQAQTQVAPPAVAL
FT                   PDFTGIVEKVEPAVVNIRTTATVPVRGGPGGGNDPYELFRWFFGPDFQPPGPAPGQRRK
FT                   QPQPQPEERTIPRGVGSGFFISADGYILTNNHVISDATDIYVTLTDGREFKAKVIGSDD
FT                   RTDVALIKIDAKDMTPLTIGDPKTLKKGQWVLAIGSPFGLDSTVTAGIVSAIGRDTGEY
FT                   LPFIQTDVAVNPGNSGGPLLNLQGEAVGINSQIISRSGGFMGISLAIPIDEAMRVVDQL
FT                   RATGKVTRGRIGVQIGEVGKDVADAIGLPRAEGALVSSVEAEGPAESAGVQPGDVILKF
FT                   NGEPIKRWSDLPRIVGETKPGTSAKMDVWRKGRNVTLSVKVAELKSDRSAATADEGKQA
FT                   EPTAENHLGLGVVDVPSDTQRKLRIKGGAQVRVAEGAAAQAGLQEGDIVLAVNDTDVTD
FT                   AAQFNKLVSRLDKKKAAGLLVRRGDQTQWVAVQPASK"
FT   misc_feature    complement(142147..142404)
FT                   /note="HMMPfam hit to PF00595, DE PDZ domain (Also known as
FT                   DHR or GLGF), score 0.0006"
FT   misc_feature    complement(142480..142755)
FT                   /note="HMMPfam hit to PF00595, DE PDZ domain (Also known as
FT                   DHR or GLGF), score 4.7e-11"
FT   misc_feature    complement(142759..143268)
FT                   /note="HMMPfam hit to PF00089, DE Trypsin, score 2.1e-14"
FT   misc_feature    complement(143083..143124)
FT                   /note="PS00584 pfkB family of carbohydrate kinases
FT                   signature 2."
FT   misc_feature    complement(143491..143592)
FT                   /note="Signal peptide predicted for BB3749 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.952 between residues 34 and 35"
FT   misc_feature    complement(143500..143568)
FT                   /note="1 probable transmembrane helix predicted for BB3749
FT                   by TMHMM2.0 at aa 9-31"
FT   CDS             complement(143630..144691)
FT                   /transl_table=11
FT                   /gene="mucB"
FT                   /gene_synonym="rseB"
FT                   /locus_tag="BB3750"
FT                   /product="putative sigma factor regulatory protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2435"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD28"
FT                   /protein_id="CAE35724.1"
FT                   /translation="MMTPLLYMRRPALGRMTWRQRQTASLAAMAVLMGLMAIYARPVRA
FT                   AAPAVPEDPVLLLSSIQQAARKQDYAGVFMYQQGESIQSSRLVHVLDGTGERERLEILD
FT                   GQPREYLRHNEDVQCLIPERKTVLLERRRGDRFPGLLLGDPAGLAENYHIRAESQLHRV
FT                   ADRQCRLITVEPRDALRYGYRLCADVATNLLLKAQTLDAARRVVEQVSFTSIRLGGDVD
FT                   PAMLTSRWSTRDWRVLEPVMKPVDLAAQGWRITAPKGFSAVLQVARSMGPATVNQLVLS
FT                   DGLAAISVFIEPYDSRRHAHPPEGLARRGAINIYGTRIADFWLTALGEVPAGTLEQLAE
FT                   TTEYVPVDAAKQQ"
FT   misc_feature    complement(144557..144691)
FT                   /note="Signal peptide predicted for BB3750 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.999) with cleavage site
FT                   probability 0.961 between residues 45 and 46"
FT   misc_feature    complement(144572..144625)
FT                   /note="1 probable transmembrane helix predicted for BB3750
FT                   by TMHMM2.0 at aa 23-40"
FT   CDS             complement(144688..145188)
FT                   /transl_table=11
FT                   /locus_tag="BB3751"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2436"
FT                   /db_xref="GOA:Q7WD27"
FT                   /db_xref="HSSP:1OR7"
FT                   /db_xref="InterPro:IPR005572"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD27"
FT                   /protein_id="CAE35725.1"
FT                   /translation="MQTAAKSLTAESSWEESVSAWMDGEGSEDFFPEMSHPHGRQTWDT
FT                   YHLIGDALRNADLAVSPSAQFQARLARALEAELPIVAAPRRRSPLRLGLSGLAVAAAVA
FT                   TVAWVAQPYLTGAPTGETRVLADATPASAGDDAGLRDYLEAHRQVAGPSAVRQVSFDAG
FT                   AGR"
FT   misc_feature    complement(144847..144915)
FT                   /note="1 probable transmembrane helix predicted for BB3751
FT                   by TMHMM2.0 at aa 92-114"
FT   misc_feature    complement(144922..145143)
FT                   /note="HMMPfam hit to PF03872, DE Anti sigma-E protein
FT                   RseA, N-terminal domain, score 0.00046"
FT   CDS             complement(145201..145800)
FT                   /transl_table=11
FT                   /gene="sigE"
FT                   /gene_synonym="rpoE"
FT                   /gene_synonym="algT"
FT                   /gene_synonym="algU"
FT                   /locus_tag="BB3752"
FT                   /product="RNA polymerase sigma factor"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2437"
FT                   /db_xref="GOA:Q7WD26"
FT                   /db_xref="HSSP:1OR7"
FT                   /db_xref="InterPro:IPR000838"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD26"
FT                   /protein_id="CAE35726.1"
FT                   /translation="MSERDVDAELVARVQRGDKKAFDLLVLKYQRKILRLLARMIRDPA
FT                   EIEDVAQEAFIKAYRALPQFRGDSAFYTWLYRIAINTARNWLASSGRRPSAPNAIETED
FT                   GETFNETDNLTDISTPESMAATREIAETVNAAIEELPEELRTAIVLREIEGMSYEDIAQ
FT                   SMDCPIGTVRSRIFRAREAIASRLRPLLDTDAERRW"
FT   misc_feature    complement(145531..145698)
FT                   /note="HMMPfam hit to PF00776, , score 1.3e-25"
FT   misc_feature    complement(145567..145662)
FT                   /note="PS01063 Sigma-70 factors ECF subfamily signature."
FT   CDS             complement(145797..146297)
FT                   /transl_table=11
FT                   /locus_tag="BB3753"
FT                   /product="putative integral membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2438"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD25"
FT                   /protein_id="CAE35727.1"
FT                   /translation="MNPDGGIFDNRWHLRLPVRVPALAVALGWLAVLAAAGSAAVALVQ
FT                   LQWLAPLSAGMLAVAAGGLGGLLWLRGNRGGAPALCAAPVPGGWRVLGGRGWVQARLLA
FT                   VRQGPLWLRLELGLDAEAGSRVTNSKIICTVWRPALPPGHWRRLRLLATAAQGQAATSW
FT                   EAS"
FT   misc_feature    complement(join(146088..146156,146169..146237))
FT                   /note="2 probable transmembrane helices predicted for
FT                   BB3753 by TMHMM2.0 at aa 21-43 and 48-70"
FT   misc_feature    complement(146124..146243)
FT                   /note="PS00041 Bacterial regulatory proteins, araC family
FT                   signature."
FT   misc_feature    complement(146172..146297)
FT                   /note="Signal peptide predicted for BB3753 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.900) with cleavage site
FT                   probability 0.329 between residues 42 and 43"
FT   CDS             complement(146299..147528)
FT                   /transl_table=11
FT                   /gene="fabF"
FT                   /gene_synonym="fabJ"
FT                   /locus_tag="BB3754"
FT                   /product="3-oxoacyl-[acyl-carrier-protein] synthase II"
FT                   /EC_number="2.3.1.41"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2439"
FT                   /db_xref="GOA:Q7WD24"
FT                   /db_xref="HSSP:1KAS"
FT                   /db_xref="InterPro:IPR018201"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD24"
FT                   /protein_id="CAE35728.1"
FT                   /translation="MKRRVVITGLGIVSPVGNDIASAWDNIVNGRSGISRISRFDPTPL
FT                   TTHIAGEVKDFDVTQYMPAKEARQMDTFIHYGLAAGMQAWRDCGLEVTETNAERIGVIV
FT                   GSGIGGLPRIEETQTEMLAKGPRRISPFFVPASLINLISGQLSIAYGMKGPSYAVVSAC
FT                   TTGLHCIGDAARLIEYGDADVMLAGGAESTVSPLGIGGFAAMRALSTRNDDPTTASRPW
FT                   DRDRDGFVLGEGAGVLVLEEYEHAKKRGARIYGELAGYGMSSDAHHITAPDKDGPRRGI
FT                   LNALRNGGINADEVSYVNAHGTSTPLGDKNETDALKLAFGDHASKLVVNSTKSMTGHLL
FT                   GAAGGIEAVFTTLAVHNQISPPTINIFNQDPECDLDYCANEARPMKIEIGLSNSFGFGG
FT                   TNGSMAVRRV"
FT   misc_feature    complement(146305..146769)
FT                   /note="HMMPfam hit to PF02801, DE Beta-ketoacyl synthase,
FT                   C-terminal domain, score 1.1e-56"
FT   misc_feature    complement(146791..147525)
FT                   /note="HMMPfam hit to PF00109, DE Beta-ketoacyl synthase,
FT                   N-terminal domain, score 2.5e-86"
FT   misc_feature    complement(147019..147069)
FT                   /note="PS00606 Beta-ketoacyl synthases active site."
FT   misc_feature    complement(147466..147528)
FT                   /note="Signal peptide predicted for BB3754 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.610) with cleavage site
FT                   probability 0.430 between residues 21 and 22"
FT   CDS             complement(147718..147957)
FT                   /transl_table=11
FT                   /gene="acpP"
FT                   /locus_tag="BB3755"
FT                   /product="acyl carrier protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2440"
FT                   /db_xref="GOA:Q7WD23"
FT                   /db_xref="HSSP:1ACP"
FT                   /db_xref="InterPro:IPR006162"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WD23"
FT                   /protein_id="CAE35729.1"
FT                   /translation="MESIEQRVKKIVAEQLGVNEAEIKNESSFLDDLGADSLDMVELVM
FT                   ALEDEFETEIPDEEAEKITTVQQAIDYINSHGKQ"
FT   misc_feature    complement(147730..147777)
FT                   /note="PS00038 Myc-type, 'helix-loop-helix' dimerization
FT                   domain signature."
FT   misc_feature    complement(147739..147942)
FT                   /note="HMMPfam hit to PF00550, DE Phosphopantetheine
FT                   attachment site, score 3.8e-22"
FT   misc_feature    complement(147817..147864)
FT                   /note="PS00012 Phosphopantetheine attachment site."
FT   CDS             complement(148140..148892)
FT                   /transl_table=11
FT                   /gene="fabG"
FT                   /locus_tag="BB3756"
FT                   /product="3-oxoacyl-[acyl-carrier protein] reductase"
FT                   /EC_number="1.1.1.100"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2441"
FT                   /db_xref="GOA:Q7WD22"
FT                   /db_xref="HSSP:1Q7B"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD22"
FT                   /protein_id="CAE35730.1"
FT                   /translation="MEKTSTELQGKIALVTGATRGIGRAIAQELAARGATVVGTATSEA
FT                   GAQAITEALAAQGGRGVVLDVTDAQACEALIEQLGKDGGGPHILVNNAGITRDTLAMRM
FT                   KDDDWSAVIDTNLAAVFRLSRAVLRGMMKARWGRIINITSVVGASGNAGQANYAAAKAG
FT                   VAGMARALARELGSRNITVNCVAPGFIDTDMTRILGEDQTAALLQQIPLGRLGAPADIA
FT                   HAVAFLAGPQAGYITGTTLHVNGGMYMQ"
FT   misc_feature    complement(148152..148868)
FT                   /note="HMMPfam hit to PF00106, DE short chain
FT                   dehydrogenase, score 7.5e-90"
FT   misc_feature    complement(148377..148463)
FT                   /note="PS00061 Short-chain dehydrogenases/reductases family
FT                   signature."
FT   CDS             complement(148894..149829)
FT                   /transl_table=11
FT                   /gene="fabD"
FT                   /locus_tag="BB3757"
FT                   /product="malonyl CoA-acyl carrier protein transacylase"
FT                   /EC_number="2.3.1.39"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2442"
FT                   /db_xref="GOA:Q7WD21"
FT                   /db_xref="InterPro:IPR004410"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD21"
FT                   /protein_id="CAE35731.1"
FT                   /translation="MKLAFVFPGQGSQSVGMLDAWAGNAAVADVVARASAALGQDLGAL
FT                   MAQGPAEQLNLTTNTQPAMLTAGAACFAAWRAAGGPMPEVMAGHSLGEYAALTAAGALA
FT                   LEDAVRLVRVRADAMQAAVPVGAGAMAAVLGLDDDAVRAACQQAAQGEVVEAVNFNAPA
FT                   QVVIAGHKAAVERACEAAKAAGAKRALLLPVSAPFHSSLLKPAAEVLQGALAGVAVSAP
FT                   QVPVLNNVDVATPAEPAAIRDALVRQAWHPVRWVETLRAMKELGVTHVIECGPGKVLTG
FT                   LTKRIDADLTGIAITDPASLEAALAAVNGN"
FT   misc_feature    complement(148906..149823)
FT                   /note="HMMPfam hit to PF00698, DE Acyl transferase domain,
FT                   score 5.3e-63"
FT   CDS             complement(149911..150900)
FT                   /transl_table=11
FT                   /gene="fabH"
FT                   /locus_tag="BB3758"
FT                   /product="3-oxoacyl-[acyl-carrier-protein] synthase III"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2443"
FT                   /db_xref="GOA:Q7WD20"
FT                   /db_xref="InterPro:IPR016038"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WD20"
FT                   /protein_id="CAE35732.1"
FT                   /translation="MMEKAMKYAKIAGSGGYLPERVVTNDDLAAELATRQISTSDEWIV
FT                   ERTGIRQRHLAERGVTTSQLATEAARRAMDDAGVQADEIDMIIVATSTPDYVFPSTACL
FT                   VQANLGAKGGAAFDVQAVCSGFVYAMTTADSFIRAGRARCALVIGAEVFSRILDWNDRG
FT                   TCVLFGDGAGAVVLKAADEPGILAAHLHADGSQTKILCAAGNVAYGDVTGDPFLRMDGQ
FT                   AVFKQAVTVLDRSARDVCAEAGVEVDDIDWLIPHQANVRILNFLARKLRVPTERVVITV
FT                   DQHANTSAASVPLALDVARRDGRVKPGQLVLMQGVGGGFTWGSVLARM"
FT   misc_feature    complement(150310..150342)
FT                   /note="PS00087 Copper/Zinc superoxide dismutase signature
FT                   1."
FT   CDS             complement(150897..151955)
FT                   /transl_table=11
FT                   /locus_tag="BB3759"
FT                   /product="putative fatty acid synthesis protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2444"
FT                   /db_xref="GOA:Q7WD19"
FT                   /db_xref="InterPro:IPR012281"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WD19"
FT                   /protein_id="CAE35733.1"
FT                   /translation="MIRIAIDCMGGDFGLPVTIPAAIEFARQFPDTRLLLVGLPDAIEA
FT                   ALAERRDAPRDRLDIVPATEVVSMDDPVEVALRRKKDSSMRLAAQAVKDGRADACISAG
FT                   NTGAWMAISRYVLKTLDGIDRPAIATSIPNQTGRATTVLDLGANVDCSAEHLLQFAIMG
FT                   AALSQAVDHRDRPTVGLLNIGEEIIKGNEVVKEAAELLRASPLNFYGNVEGNDIFKGTV
FT                   DVVVCDGFVGNVVLKSVEGLAKMLSSVIREEFKRNFITLLAGAFAKPVLNRLRNRVDNR
FT                   RYNGAALLGLRGVVIKSHGSADAYAFGFALQRAREAVASKLLERTAQTVAQITQRVQSG
FT                   EAVAPGAAGDTA"
FT   misc_feature    complement(150981..151952)
FT                   /note="HMMPfam hit to PF02504, DE Fatty acid synthesis
FT                   protein, score 5.7e-133"
FT   CDS             complement(152012..152194)
FT                   /transl_table=11
FT                   /gene="rpmF"
FT                   /locus_tag="BB3760"
FT                   /product="50s ribosomal protein l32"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2445"
FT                   /db_xref="GOA:Q7WD18"
FT                   /db_xref="InterPro:IPR002677"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WD18"
FT                   /protein_id="CAE35734.1"
FT                   /translation="MAVQQNKKSPSKRGMHRSHDFLVNPATAIEPNTGETHLRHHISPN
FT                   GFYRGRKVLKTKADE"
FT   CDS             complement(152246..152839)
FT                   /transl_table=11
FT                   /locus_tag="BB3761"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2446"
FT                   /db_xref="InterPro:IPR003772"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD17"
FT                   /protein_id="CAE35735.1"
FT                   /translation="MGSGTDAQNAQSHIDAFMFARQAKRLEGSVPLVRLARFMEGLPEQ
FT                   PGGEAGLARWAVEGGTGQGSSRTGHPISGQPLLRLRVRAAPMLVCQRCNQPFVYPVDNT
FT                   VALQLVKSEEDLDEDLSETQDEDFADDLPEKVVGSHNFDLLAQVEDELILSVPYVPRHD
FT                   VCPGAQAESGEASQEPAVKRPSPFAVLEQLKHKD"
FT   CDS             152948..153547
FT                   /transl_table=11
FT                   /locus_tag="BB3762"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2447"
FT                   /db_xref="GOA:Q7WD16"
FT                   /db_xref="InterPro:IPR003697"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WD16"
FT                   /protein_id="CAE35736.1"
FT                   /translation="MPAIPPKLILASSSRYRRELLSRLRLPFTAISPDVDETPQPGEAP
FT                   ADLALRLSVAKAMAVAATHPGSVVIGSDQVATVDGDPIGKPGGFERAREQLRRLSGRAV
FT                   EFHSAMAVTDGVHTETADIVTLCRFRTLTDAAIDAYLRAEEPYDTAGSAKAESLGIALM
FT                   DSIRSDDPTAIIGLPLIALTRMLGRFGLDPLTGHPA"
FT   misc_feature    152963..153529
FT                   /note="HMMPfam hit to PF02545, DE Maf-like protein, score
FT                   3.1e-43"
FT   CDS             153544..154254
FT                   /transl_table=11
FT                   /locus_tag="BB3763"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2448"
FT                   /db_xref="GOA:Q7WD15"
FT                   /db_xref="InterPro:IPR000878"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD15"
FT                   /protein_id="CAE35737.1"
FT                   /translation="MSGALHLIPVGLGDAPPERWLPADVRALAGRLDTYIAENAKTARA
FT                   FLKLLGTVRPLQEITIHTLTDAVPAGQIEQWLAPLRGGAEIGLVSEAGCPAVADPGAKV
FT                   VAAAHRLGLAVRPWVGPSSILLGLMASGLDGQRFAFHGYAPVDPAERARQLRAWEQHSA
FT                   RHDQTQILIETPYRNGAMFATLLAALRPDTRLCIARALTTGDELVQTRTIADWKRQPAP
FT                   ELDKKPTLFLFLAR"
FT   misc_feature    153553..154194
FT                   /note="HMMPfam hit to PF00590, DE Tetrapyrrole
FT                   (Corrin/Porphyrin) Methylases, score 6.3e-05"
FT   CDS             154256..155083
FT                   /transl_table=11
FT                   /locus_tag="BB3764"
FT                   /product="putative exported hydrolase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2449"
FT                   /db_xref="GOA:Q7WD14"
FT                   /db_xref="HSSP:1J3G"
FT                   /db_xref="InterPro:IPR002502"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD14"
FT                   /protein_id="CAE35738.1"
FT                   /translation="MSWITRAAPIACLLALAGCAARGPAGLDLDTSITAVSQSSRVRAV
FT                   VLHYTSTGNENSLKILSERKVSAHYLITDTPRPRVYRLVDETRAAWHAGISAWYGQSTM
FT                   NSTSIGIELVNPGWTNGEGNWTRGGHGDTDSRHWAPYSDAQIETLIVLLRDIVARHGIA
FT                   PENIVGHSDIAPQRKVDPGPLFPWQRLAQAGLGRWYDEAGAAAHLARLQAEGIPDIAWF
FT                   QGQLARLGYATPQSGVLDTATRNVLAAFQMHYRPARHDGQPDAETAAIMLALR"
FT   misc_feature    154256..154321
FT                   /note="Signal peptide predicted for BB3764 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.996) with cleavage site
FT                   probability 0.407 between residues 22 and 23"
FT   misc_feature    154280..154312
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    154361..154822
FT                   /note="HMMPfam hit to PF01510, DE
FT                   N-acetylmuramoyl-L-alanine amidase, score 7.9e-38"
FT   CDS             complement(155080..155742)
FT                   /transl_table=11
FT                   /locus_tag="BB3765"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0480"
FT                   /db_xref="GOA:Q7WD13"
FT                   /db_xref="InterPro:IPR013130"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WD13"
FT                   /protein_id="CAE35739.1"
FT                   /translation="MADDAIKASAAARAVPAAPLTARAIGRIKPLLFVAGLLPFARWFW
FT                   LGANDGLSANPVEFLTRSSGTWTLVCLLVTLAITPLRRLTGQPALVRLRRMCGLFAFFY
FT                   GSLHFLAWVWWDRGLDPVSMLQDVGERPFITVGFAAFVLMAALAATSTQWAMRKLGKRW
FT                   QVLHRAVYAIGLLAILHFWWHKAGKNDLQQPLLYGSVLALLLGWRVAAWWRRRGAAR"
FT   misc_feature    complement(join(155110..155163,155191..155250,
FT                   155287..155355,155398..155451,155488..155556,
FT                   155599..155652))
FT                   /note="6 probable transmembrane helices predicted for
FT                   BB3765 by TMHMM2.0 at aa 31-48, 63-85, 98-115, 130-152,
FT                   165-184 and 194-211"
FT   CDS             complement(155750..156709)
FT                   /transl_table=11
FT                   /locus_tag="BB3766"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0479"
FT                   /db_xref="GOA:Q7WD12"
FT                   /db_xref="InterPro:IPR006311"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD12"
FT                   /protein_id="CAE35740.1"
FT                   /translation="MLIRKPSDIPSSQITPETVWQGRRDWIARAGLAAAALGLPGWAQR
FT                   AAFAQDAALPGAPNSRYAVVDKPTSFKDVTTYNNYYEFGLDKGDPAAHAGRLRTRPWEI
FT                   AIEGEVGKPGVYAIDDLLKLAPMEERIYRLRCVEGWSMVIPWVGYSLSTLLQRVEPTGN
FT                   AKYVEFVTAVQRDTMPGVRSSVLDWPYVEALRLDEALHPLTMLVFGVYGKVLPNQNGAP
FT                   VRLAVPWKYGFKSAKSLVAIRLVEKQPVSSWMNAAPQEYGFYANVNPDVPHPRWSQATE
FT                   RRIGEDGLFSPKRKTLMFNGYAEQVASLYQGLDLRANY"
FT   CDS             complement(156866..157537)
FT                   /transl_table=11
FT                   /locus_tag="BB3767"
FT                   /product="probable hydrolase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0478"
FT                   /db_xref="GOA:Q7WD11"
FT                   /db_xref="InterPro:IPR006402"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD11"
FT                   /protein_id="CAE35741.1"
FT                   /translation="MGYSLVVFDWDGTLMDSTHSIVAAIQGACRDLDLPVPSASSASWV
FT                   IGLSLESALRRAVPELTQAMVPRFLERYRTHYLLRDPELRLFEGVRELLADLASQDVRL
FT                   AVATGKSRVGLNRALAATGLGPLFDATRTADETFSKPHPAMLQELMHELGHEADAVVMV
FT                   GDTSHDLQMAANAGVHGLGVAYGAHTLAELEACAPQAVVDSVAVLREWLLARSPGRIES
FT                   V"
FT   misc_feature    complement(156980..157531)
FT                   /note="HMMPfam hit to PF00702, DE haloacid
FT                   dehalogenase-like hydrolase, score 2.6e-30"
FT   CDS             complement(157540..158505)
FT                   /transl_table=11
FT                   /gene="rluC"
FT                   /locus_tag="BB3768"
FT                   /product="ribosomal large subunit pseudouridine synthase C"
FT                   /EC_number="4.2.1.70"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0477"
FT                   /db_xref="GOA:Q7WD10"
FT                   /db_xref="HSSP:1PRZ"
FT                   /db_xref="InterPro:IPR006225"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD10"
FT                   /protein_id="CAE35742.1"
FT                   /translation="MSLSAMRKETSPGTTPPAVRMLAIGPEHDGQRIDNFLLRLCKGVP
FT                   KSHIYKAIRGGEVRVNKGRISAEYRLVEGDVVRVPPLRLPDPGAARPVPGAEFPVVYED
FT                   DALLVIDKPAGVAVHGGSGVSFGVIEQLRAARPQARFLELVHRLDRETSGLLMLAKKRS
FT                   ALLALHAMLREGKGDKHYLALVEGDWVNDRQHIRLALTKWTTQSGERRVRVDQAGQAAH
FT                   TIVTLRKRFGGYSLVDAELRTGRTHQIRVHLASSGFPIVGDDKYGTDETRAAFARRGFG
FT                   RMFLHAHQLTLPHPLTGETLRLTADLPPACLKLLKQLETA"
FT   misc_feature    complement(157741..158190)
FT                   /note="HMMPfam hit to PF00849, DE RNA pseudouridylate
FT                   synthase, score 6.6e-47"
FT   misc_feature    complement(158029..158073)
FT                   /note="PS01129 Rlu family of pseudouridine synthase
FT                   signature."
FT   misc_feature    complement(158275..158415)
FT                   /note="HMMPfam hit to PF01479, DE S4 domain, score 1.1e-08"
FT   CDS             159013..162153
FT                   /transl_table=11
FT                   /gene="rne"
FT                   /gene_synonym="ams"
FT                   /gene_synonym="hmp1"
FT                   /locus_tag="BB3769"
FT                   /product="ribonuclease E"
FT                   /EC_number="3.1.4.-"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0475"
FT                   /db_xref="GOA:Q7WD09"
FT                   /db_xref="InterPro:IPR004659"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD09"
FT                   /protein_id="CAE35743.1"
FT                   /translation="MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGV
FT                   ITRIEPGLEACFVNYGEDRHGFLPFKEVARSFFKEGVDVRTARIQDALREGQELIVQVE
FT                   KEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMEQLDVPQGM
FT                   SIIARTAGIGRNVDELQWDLSYLLQLWTAIDGAARDNAAPILIYLESSLVIRAIRDYFS
FT                   PEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIPLFSRFQIEHQIETAYSRTV
FT                   QLPSGGAVVIDHTEALVAVDVNSARSTRGADIEETALRTNLEAAEEVARQLRLRDLGGL
FT                   IVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSH
FT                   ITCPRCNGTGVIRDAESSALHVLRLLQEEAMKENTAAVHAQVPVDVATFLLNEKRADIT
FT                   KMEARLKVNLVLIPNKHLETPHHHIERLRHDDPRLEETKTSFELAEAPATDLTWQPREH
FT                   EIKARPEALVKGITPAQPAPVSTPAPAKAPAAAAATQGGLGGWFKRLTSWLGGSAEPAK
FT                   TETKSEDEKRGANRARRAHDGQDRRGERHGSDRNRHRRNEPRGDHAESGDARHHVRGGR
FT                   RQEERGERGERGQKEARTEREQTQQQQAAGQPRQERPSTAETGEEGGRGRGRRGRGRGR
FT                   REEGQTDTPMTEQENMVAALAETVAAALPEKRQAAPAPAAAAAAALTVAEAASSNELAP
FT                   VAEDADGIDGIDANVDAGAETGSDPERKRRRRRSRRGRRSQEDGSTVNAEGVEGADDEQ
FT                   VDAPAGVADIETPAQPAESETVAAPVAVSVAADEPAATIETAAAEPAAPQATEAPRAEP
FT                   VVAAADTAPQAVQPVQAELTPVETPQAQAQPAEPAAAAPVETAPVETAPVETAPVETAP
FT                   VETAPAATTPVEPAEQAAAPVEAEAPVAQPEKTPEPAAVRPAEAIVMPAQAAAPATGAL
FT                   HDVLDAAGLTWVETDPERHAQTQMRIAAAAAPVRLGRERKPVASVSNEPLVQVETRH"
FT   misc_feature    159115..159366
FT                   /note="HMMPfam hit to PF00575, DE S1 RNA binding domain,
FT                   score 4.4e-13"
FT   CDS             complement(162229..163173)
FT                   /transl_table=11
FT                   /locus_tag="BB3770"
FT                   /product="choloylglycine hydrolase"
FT                   /EC_number="3.5.1.24"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0474"
FT                   /db_xref="GOA:Q7WD08"
FT                   /db_xref="InterPro:IPR003199"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD08"
FT                   /protein_id="CAE35744.1"
FT                   /translation="MITARSMDWKVDVGTNLWVFPRGMKRSGQAGPNSIQWTSKHGSVI
FT                   ASGYDISTTDGMNEAGLVANVLWLAESSYPEYDGKTPGLTLAAWAQYVLDNFASVREAV
FT                   DTLASEPFTVVTDNVPGEQRPATLHLSLSDASGDSAIIEYIDGKQVIHHNRAYQVMTNS
FT                   PTFDKQLALNEYWKQIGGTVMLPGTNRASDRYARAYFYVNAIPKSEDPVEAIASVFSVI
FT                   RNVSVPYGITTPDQPNISSTRWRTVADHKRKRYFFESALTPNIFWIDLGALDFSAESGK
FT                   VMKLDLGPDQAHIYSGQANAHFEQAAPFKFLGL"
FT   misc_feature    complement(162325..163170)
FT                   /note="HMMPfam hit to PF02275, DE Choloylglycine hydrolase,
FT                   score 7.4e-30"
FT   CDS             complement(163595..164131)
FT                   /transl_table=11
FT                   /locus_tag="BB3771"
FT                   /product="putative lipoprotein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3592"
FT                   /db_xref="InterPro:IPR018550"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD07"
FT                   /protein_id="CAE35745.1"
FT                   /translation="MQFLKKNKPLFGIVTLALACATAQAQPTQGGVSLHYGIGDHYQRV
FT                   TLNYETPTLWSHQFGGNWGRLDLTPELGASYWWADGSRSPGHVWQASAIPMFRWWTGER
FT                   FYIEAGIGATVFSSTSFADKRIGSAFQFGDHIGLGFLLTPSNRIGLRYSHFSNAGIKEP
FT                   NPGLDIVQLTYTYQF"
FT   misc_feature    complement(164057..164131)
FT                   /note="Signal peptide predicted for BB3771 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.995 between residues 25 and 26"
FT   misc_feature    complement(164072..164104)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(164341..165219)
FT                   /transl_table=11
FT                   /gene="accD"
FT                   /gene_synonym="dedB"
FT                   /gene_synonym="usg"
FT                   /locus_tag="BB3772"
FT                   /product="acetyl-coenzyme A carboxylase carboxyl
FT                   transferase subunit beta"
FT                   /EC_number="6.4.1.2"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3591"
FT                   /db_xref="GOA:Q7WD06"
FT                   /db_xref="InterPro:IPR011762"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD06"
FT                   /protein_id="CAE35746.1"
FT                   /translation="MSWIEKLLPPRINKNSDSGARRVPEGLWVKCPSCESVLYSEDLAA
FT                   NLHVCPKCDHHMRIGARARIDSLLDIEGRVEIGQTTRSVDTLKFKDSRKYPERVQEAMK
FT                   QTGETDALVVMSGSIRGVSAVLACFEFEFMGGSMGSVVGERFVRGVQAALENKTPFICV
FT                   AASGGARMQESLLSLMQMAKTNAMLTRLSAAGLPFISVLTDPTMGGVSASFAFVGDVVI
FT                   AEPKALIGFAGPRVIEQTVREKLPEGFQRAEFLLKTGAIDMVVDRRQLREEIARLLALL
FT                   GNESADIVAAA"
FT   CDS             complement(165256..166113)
FT                   /transl_table=11
FT                   /gene="trpA"
FT                   /locus_tag="BB3773"
FT                   /product="tryptophan synthase alpha chain"
FT                   /EC_number="4.2.1.20"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3590"
FT                   /db_xref="GOA:Q7WD05"
FT                   /db_xref="HSSP:1UJP"
FT                   /db_xref="InterPro:IPR002028"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WD05"
FT                   /protein_id="CAE35747.1"
FT                   /translation="MTTTDRIAAAFARVSEAGRAAALIPYIAAGDPSPQATVPLMHALV
FT                   RAGADLVELGVPFSDPMADGPVVQRAAERAIAQGVGLRRVLELVADFRRDDSVTPVVLM
FT                   GYANPIERMGQRAFAQAAQAAGVDGVLVVDYPPEEVDEFAAMLAEAGVAPIFLLAPTST
FT                   EARIEAIGRVARGYVYYVSLKGVTGAGSLDTDDVARKLALIRRHVHIPVGVGFGIRDAA
FT                   SAQRIAAHADAVVIGSKLIETMEQAGAQAGADQKNEAAIAAAQQWLHTIRLALDDVKRE
FT                   NAPA"
FT   misc_feature    complement(165319..166083)
FT                   /note="HMMPfam hit to PF00290, DE Tryptophan synthase alpha
FT                   chain, score 6.5e-86"
FT   misc_feature    complement(165919..165960)
FT                   /note="PS00167 Tryptophan synthase alpha chain signature."
FT   CDS             complement(166117..167316)
FT                   /transl_table=11
FT                   /gene="trpB"
FT                   /locus_tag="BB3774"
FT                   /product="tryptophan synthase beta chain"
FT                   /EC_number="4.2.1.20"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3589"
FT                   /db_xref="GOA:Q7WD04"
FT                   /db_xref="InterPro:IPR006654"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WD04"
FT                   /protein_id="CAE35748.1"
FT                   /translation="MKPYDLPDARGHFGPYGGVFVAETLMHALDELRAAYDQCRVDPSF
FT                   IDEFNYELKHFVGRPSPVYHASRWSQRLGGAQIWFKREDLNHTGAHKVNNCIGQALLAR
FT                   RMGKPRVIAETGAGQHGVATATVAARYGMECVVFMGSEDVRRQASNVYRMKLLGATVVP
FT                   VDSGSRTLKDALNEAMRDWVTNIENTFYIIGTVAGPDPYPRMVRDFQTVIGQECLTQMP
FT                   EVIGRQPDYVVAAVGGGSNAMGIFHPYIPYENVRLIGVEAAGEGMETGRHAASLAAGQI
FT                   GVLHGNRTYVMQNADGQVQETHSVSAGLDYPGVGPEHAWLKDSGRAEYAGITDDEALAA
FT                   FHDCCRIEGIMPALESAHAIAQAVKMAPALSKDKVILVNLSGRGDKDMHTVAERAGLQL
FT                   "
FT   misc_feature    complement(166168..167157)
FT                   /note="HMMPfam hit to PF00291, DE Pyridoxal-phosphate
FT                   dependent enzyme, score 1.2e-116"
FT   misc_feature    complement(167035..167064)
FT                   /note="PS00168 Tryptophan synthase beta chain
FT                   pyridoxal-phosphate attachment site."
FT   CDS             complement(167426..168577)
FT                   /transl_table=11
FT                   /locus_tag="BB3775"
FT                   /product="putative peptidase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3588"
FT                   /db_xref="GOA:Q7WD03"
FT                   /db_xref="HSSP:1Q7L"
FT                   /db_xref="InterPro:IPR011650"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD03"
FT                   /protein_id="CAE35749.1"
FT                   /translation="MDTRTWLETLVAIDTTSRNSNLALIETVRDWLGRQGVQAWLAHNP
FT                   ERTKANLFATLPASDGAEQGGIVLSGHTDVVPVDGQDWSADPFALREQEGRLYGRGACD
FT                   MKGFIAASLALVPAFLEMPRKKPIHLAFSYDEEVGCAGAPVMLADLRERGIQPEGCVVG
FT                   EPTGMQVVVAHKGINLFRCRVHGKAAHSSLTPRGCNAIEYAARLICRIRDLADAYKANG
FT                   PYDEFYDVPFSTMTTNQIHGGIAVNTIPELCEFSYEFRNLPGMPADAIQAEVERYVRDE
FT                   LLPRMRAEYTQARIDIETGAAAPGLEASEQAAITQLVRSLTADRVTRKVAYGTEAGLFQ
FT                   GIGIPTVVCGPGHIEQAHKPDEYVALDQLAACEAFLRRLGQSL"
FT   misc_feature    complement(167567..168559)
FT                   /note="HMMPfam hit to PF01546, DE Peptidase family
FT                   M20/M25/M40, score 2.4e-61"
FT   CDS             complement(168654..170867)
FT                   /transl_table=11
FT                   /gene="relA"
FT                   /locus_tag="BB3776"
FT                   /product="putative GTP pyrophosphokinase"
FT                   /EC_number="2.7.6.5"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3587"
FT                   /db_xref="GOA:Q7WD02"
FT                   /db_xref="InterPro:IPR004095"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD02"
FT                   /protein_id="CAE35750.1"
FT                   /translation="MSATSAPDTPTPFDDAWRQLAAAGLDDAGQRQLAHAAAWAWPRFE
FT                   AQKALTGEPLASHAAGAVRILASLHTDQATRVAAVLASLPADLNAPAPTLRNDPVASEF
FT                   GVEVARLVQGARALLRLGIVARHASDSEAESGSQKEMQRKMLLAMAADLRIVLMRLASR
FT                   LQSLRWHAETRTPCAAGFARETLDLYTPLANRLGIWQLKWEMEDLAFRFLEPERYKQIA
FT                   HLLEEKRVEREAFIAEAIARMQEALARAGVVAEVSGRPKHIYSIWNKMRLKGLDFSQMY
FT                   DLRALRIIVDDVRACYTALGLVHEMWTPLPEEFDDYISRPKPNGYRSLHTVVTDAQGRA
FT                   FEVQIRTREMHQFAEYGMAAHWRYKEAGARGGQVAASSEYDRQLSWMRQLLAWNSDVED
FT                   EGEAARRADQRIYVLTPQARVIELPAGATPVDFAYHLHTDLGHRCRGARVDGQMVPLNT
FT                   RLATGQTVEVIAAKSGGPSRDWLNTQLGYLASPRARAKVRMWFNAIELQQRITQGQALV
FT                   EKELQRLGKTAVNLEQLAQGLGFARADDLYVAAAKDEFSLRQIDAVFQQPAPVAEPEPA
FT                   ALAHARSADSAEKSGKSGVLVVGVGSLLTQLARCCRPAPPDEIAGFVTRGRGVSIHRAD
FT                   CPSYKALAEREPERVIEVAWGKTSDSFYPVDISVRAQDRPGLLRDLSEVFARQRLNVVG
FT                   VNTQSRQSLAHMVFTVEVRGGESLHKALDALGEVAGVTSAARR"
FT   misc_feature    complement(168660..168875)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF01842, DE ACT domain, score
FT                   4.5e-12"
FT   misc_feature    complement(169458..169649)
FT                   /note="HMMPfam hit to PF02824, DE TGS domain, score
FT                   3.5e-26"
FT   CDS             170951..171784
FT                   /transl_table=11
FT                   /locus_tag="BB3777"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3586"
FT                   /db_xref="InterPro:IPR010384"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD01"
FT                   /protein_id="CAE35751.1"
FT                   /translation="MLRWLRGRGAKAGEVAAMQARIPPDLWRRTLHAYPFLAALSEAER
FT                   QALQARAAWLLASKNINGAHGLEITDFMRLSVAAQAALPVLNLSPTLYEGWDEIIIYPA
FT                   GFSIQRERMDEDGVMHEYIEEAVGEAWEGGPVILSWSDAAGSDGAFNVVIHEFAHKLDL
FT                   LAGQADGMPALAAHPDIDPRQWRRVLEDSLDRFAAAVEAVERAIPAHVDPESPQADPWY
FT                   ARLPLDPYAATDEAEFFAVSSEHFFVEPEPLADALPQWYALLRAYYRQDPLARLA"
FT   misc_feature    171404..171433
FT                   /note="PS00142 Neutral zinc metallopeptidases, zinc-binding
FT                   region signature."
FT   CDS             171781..172290
FT                   /transl_table=11
FT                   /locus_tag="BB3778"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3585"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WD00"
FT                   /protein_id="CAE35752.1"
FT                   /translation="MKTLLIAWHSRTGAARQMAQALERGALAAALALEQPGQLRVRRQA
FT                   ASRTDAAALLAADGYLFCAPENLGSLSGAMKECFDRCYYGVLDRIQGRPYGVAISAGTD
FT                   GEGAARQVERICTGWRLRAAAPPLIARSGAQTPAQIAAPKQVPADVLARCEELGGLLAA
FT                   TLLMGS"
FT   CDS             complement(172423..172773)
FT                   /transl_table=11
FT                   /locus_tag="BB3779"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3584"
FT                   /db_xref="InterPro:IPR019897"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCZ9"
FT                   /protein_id="CAE35753.1"
FT                   /translation="MSIKRFNVEKRLSDMAVYNGVAYLAGQVPDDASLDMAGQTAQVLA
FT                   TIDRLLAEAGTDKTKILMAQIFVANMKEFDGMNKAWDAWVAPGNSPPRATVEARLANPD
FT                   YKVEIVVTAAIG"
FT   misc_feature    complement(172429..172773)
FT                   /note="HMMPfam hit to PF01042, DE Endoribonuclease L-PSP,
FT                   score 6.1e-25"
FT   misc_feature    complement(172447..172503)
FT                   /note="PS01094 Uncharacterized protein family UPF0076
FT                   signature."
FT   CDS             complement(172825..174042)
FT                   /transl_table=11
FT                   /gene="pncB"
FT                   /locus_tag="BB3780"
FT                   /product="pututative nicotinate phosphoribosyltransferase"
FT                   /EC_number="2.4.2.11"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3583"
FT                   /db_xref="GOA:Q7WCZ8"
FT                   /db_xref="InterPro:IPR007229"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WCZ8"
FT                   /protein_id="CAE35754.1"
FT                   /translation="MVCRNVSRQQFRAIMIITSLLDTDLYKFSMMQVVLHHFPAAQVEY
FT                   RYKCRTPGINLRPYLDEIRAEVHELCQLRFTSEELDYLRGLRFIKSDFVDFLGLFHLPE
FT                   RCIFIGEGEQPGEISITVKGPWLHTILFEIPVLAIVNEVYFRNTRRNPDWEEGRKRLQS
FT                   KMNLVLDDPALADFRVAEYGTRRRFSKVWHEEIVSTMKARMGVHFAGTSNVLLAMRHGV
FT                   LPLGTMGHEYLQACQALGPRLRDSQVFALEVWAKEYRGDLGIALSDVYGMDAFLRDFDM
FT                   YFCKLFDGARHDSGDPFVWGERLLEHYRANRADPRAKTLVFSDSLTFPRAIELARQFAG
FT                   RCKVSFGIGTNLTNDLGHEPLQIVMKMVRCNGQPVAKVSDAPEKTMCDDPAYLAYLRQV
FT                   FQLPPA"
FT   CDS             174218..174490
FT                   /transl_table=11
FT                   /locus_tag="BB3781"
FT                   /product="ferredoxin"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3582"
FT                   /db_xref="GOA:Q7WCZ7"
FT                   /db_xref="HSSP:1FRK"
FT                   /db_xref="InterPro:IPR000813"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCZ7"
FT                   /protein_id="CAE35755.1"
FT                   /translation="MDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEEDVP
FT                   QDQVPFIALNVELSAEFPSISRAKKPLEDADQWNGVQDKLQYLEK"
FT   misc_feature    174263..174334
FT                   /note="HMMPfam hit to PF00037, DE 4Fe-4S binding domain,
FT                   score 2.6e-05"
FT   misc_feature    174284..174319
FT                   /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding
FT                   region signature."
FT   CDS             174536..175333
FT                   /transl_table=11
FT                   /locus_tag="BB3782"
FT                   /product="putative ferredoxin--NADP reductase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3581"
FT                   /db_xref="GOA:Q7WCZ6"
FT                   /db_xref="HSSP:1FDR"
FT                   /db_xref="InterPro:IPR001221"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCZ6"
FT                   /protein_id="CAE35756.1"
FT                   /translation="MTDTKYTRQTITAVQTWVPGKLFSVRVTRDPAFLFQAGQFARVGL
FT                   PDSDDPQAEPSVWRAYSMVSAPEEPWLEFYSIVVPEGQFSPRMARLQPGDALYVEKKPF
FT                   GFLTIDRFAPGGDLWLLASGTGLSAYLSILRDPATWRAFDRIILVHGVRSAEELAYRDE
FT                   IEQWRSQPAFAPYFEADPRKLIYLPIATRETLPGMPQARLTTLIADGRLEQLAGQPLDP
FT                   QRAKIMLCGNPAMLADARKLLSERGFAPGRRGIPGNLAVENYW"
FT   misc_feature    174878..175261
FT                   /note="HMMPfam hit to PF00175, DE Oxidoreductase
FT                   NAD-binding domain, score 1.3e-05"
FT   CDS             175478..176704
FT                   /transl_table=11
FT                   /locus_tag="BB3783"
FT                   /product="intracellular PHB depolymerase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3580"
FT                   /db_xref="InterPro:IPR009656"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCZ5"
FT                   /protein_id="CAE35757.1"
FT                   /translation="MLYQLHEMQRAFLRPLAAFTDASSQLFTHPYSPLAYMPMSRQFAA
FT                   GCELVHRIGKEYQKPAWNLPATEIQGKRVAVIEAVVLDKPFCRLVHFQRDVRRTAGRAD
FT                   PRVLLVAPLSGHHATLLRDTVRALLPAHDVYVTDWVDARMVPQDAGPFHLDDYVRYIQA
FT                   FLRHLGPDTHVISVCQPTVPVLAAISLMASANDPCQPRSMVMMGGPIDPRESPTQVNRL
FT                   ATTKPYAWFESQLIHAVPAPYPGAGRRVYPGFLQHAGFMAMNPDRHLKSHYDFYLDLLR
FT                   GDDGDAEAHRRFYDEYNAVLDMPAEFYLDTIRTVFQEFRLPGGTWEIDGQVVRPADIRK
FT                   TSLLTVEGELDDISGQGQTRAAIKLCSGIPAARKSHYTAVGCGHYGIFSGRRWRELICP
FT                   KIAAFIRQS"
FT   CDS             176762..177403
FT                   /transl_table=11
FT                   /locus_tag="BB3784"
FT                   /product="putative ferredoxin"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3579"
FT                   /db_xref="GOA:Q7WCZ4"
FT                   /db_xref="HSSP:1FCA"
FT                   /db_xref="InterPro:IPR010207"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCZ4"
FT                   /protein_id="CAE35758.1"
FT                   /translation="MSSCSSLVDRIDALLPQTQCTKCGYDGCRPYAQAIADGAAAINRC
FT                   PPGDESGIAALAALLDTPPLPLDRARGEPGPLLVAVIDEAHCIGCTLCIKACPVDAIVG
FT                   ANKRMHTVLADWCTGCDLCVAPCPVDCIDMRPAARVWSEADAQAARQRHQQRQARVRRE
FT                   TAANERLMAATAEPAPQPAATESAEDAARKRSTIEAALARARARRSAQRP"
FT   misc_feature    176999..177070
FT                   /note="HMMPfam hit to PF00037, DE 4Fe-4S binding domain,
FT                   score 1.5e-06"
FT   misc_feature    177020..177055
FT                   /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding
FT                   region signature."
FT   misc_feature    177089..177160
FT                   /note="HMMPfam hit to PF00037, DE 4Fe-4S binding domain,
FT                   score 0.00068"
FT   misc_feature    177110..177145
FT                   /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding
FT                   region signature."
FT   CDS             177400..178035
FT                   /transl_table=11
FT                   /gene="nth"
FT                   /locus_tag="BB3785"
FT                   /product="endonuclease III"
FT                   /EC_number="4.2.99.18"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3578"
FT                   /db_xref="GOA:Q7WCZ3"
FT                   /db_xref="HSSP:1KEA"
FT                   /db_xref="InterPro:IPR003583"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCZ3"
FT                   /protein_id="CAE35759.1"
FT                   /translation="MNAVKRREIFARLQAANPKPTTELEYETPFQLLIAVLLSAQATDK
FT                   SVNLATRKFFPRHGTPQAMLELGEEGLAEYIKTIGLYRTKAKNAIATCRLLLERHGGEV
FT                   PQSREALEALPGVGRKTANVVLNTAFGEATIAVDTHIFRVSNRTGIAPGKNVLEVERKL
FT                   EKVVPREYLLDAHHWLILHGRYVCVARKPKCPQCGISDLCEYKLKTKA"
FT   misc_feature    177487..177951
FT                   /note="HMMPfam hit to PF00730, DE HhH-GPD superfamily base
FT                   excision DNA repair protein, score 4.6e-72"
FT   misc_feature    177703..177792
FT                   /note="PS01155 Endonuclease III family signature."
FT   misc_feature    177958..178008
FT                   /note="PS00764 Endonuclease III iron-sulfur binding region
FT                   signature."
FT   CDS             178294..179067
FT                   /transl_table=11
FT                   /locus_tag="BB3786"
FT                   /product="ABC transporter ATP-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3577"
FT                   /db_xref="GOA:Q7WCZ2"
FT                   /db_xref="HSSP:1JI0"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCZ2"
FT                   /protein_id="CAE35760.1"
FT                   /translation="MDDTILETKGLTKEFRGFVAVNGVDLRVKRGQIHALIGPNGAGKT
FT                   TCFNLLTKFLAPTSGTIVFNGRDITRERPAQIARRGIIRSFQISAVFPRLTVLENVRLG
FT                   LQRKTGLSFQFWRSERQLATLNQPALRLLEEVDLASFAHELTINLPYGRKRALEIATTL
FT                   AMEPELMLLDEPTQGMGHEDVARVTQLIKRVSAGRTILMVEHNMNVVSSIADTITVLAR
FT                   GAVLAEGPYAEVSRHPAVMQAYMGTTNGELQGAHA"
FT   misc_feature    178384..178962
FT                   /note="HMMPfam hit to PF00005, DE ABC transporter, score
FT                   5e-43"
FT   misc_feature    178405..178428
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             179064..179774
FT                   /transl_table=11
FT                   /locus_tag="BB3787"
FT                   /product="ABC transporter ATP-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3576"
FT                   /db_xref="GOA:Q7WCZ1"
FT                   /db_xref="HSSP:1JI0"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCZ1"
FT                   /protein_id="CAE35761.1"
FT                   /translation="MSIPALEIAGLQAWYGESHILHGVDMQVGQGEVVTLLGRNGAGRT
FT                   TTLRAILGLTGARQGSVRIHGTESIELPTYKIAHLGVGYCPEERGIFASLSCEENLLLP
FT                   PPVGALGGGMSLTEIYDMFPNLHERRNSPGTRLSGGEQQMLAVARILRTGANLLLLDEI
FT                   SEGLAPVIVQALARMIMALKERGYTIVMVEQNFHFAAPLADRFYVMEHGQIVEHFEAAE
FT                   LSRKQGTLNELLGV"
FT   misc_feature    179154..179699
FT                   /note="HMMPfam hit to PF00005, DE ABC transporter, score
FT                   8.3e-39"
FT   misc_feature    179472..179516
FT                   /note="PS00211 ABC transporters family signature."
FT   CDS             179833..181047
FT                   /transl_table=11
FT                   /locus_tag="BB3788"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3575"
FT                   /db_xref="InterPro:IPR001828"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCZ0"
FT                   /protein_id="CAE35762.1"
FT                   /translation="MKLHKITVALAVAGLGFAGLPAQAQGISDDVIRIGFITDMSGVYS
FT                   DIDGKAGVEAIRMAIEDAGGAINGKKIELVSADHQNKADIASARTREWIDQQKVDMIIG
FT                   GTNSSTSLAIAQVAAEKKKPFLAVGAGASDLTNAQCSPYTIHYAYDTVALARGTGSAVV
FT                   KDGGKTWFFLTADYAFGHALERDTANVVKASGGEVKGQVRAPLGASDFSSFLLQAQASG
FT                   AQILGLANAGGDTINSIKAANEFGVTATMKMAGLLVFINDIHSLGLDATKGMYLTDGWY
FT                   WDQSDASRAWAKKFEDKIGRKPSMLQAGDYSAAMFYLNAVKATGSDDGDATMKWMKSNK
FT                   INDFFAQGGYVREDGRMIHDMYLMKVKSKEESKGPWDYYNVVATLPGDEVYTKLSESTC
FT                   PLLKK"
FT   misc_feature    179833..179904
FT                   /note="Signal peptide predicted for BB3788 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.994 between residues 24 and 25"
FT   CDS             181139..182026
FT                   /transl_table=11
FT                   /locus_tag="BB3789"
FT                   /product="putative branched-chain amino acid transport
FT                   permease"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3574"
FT                   /db_xref="GOA:Q7WCY9"
FT                   /db_xref="InterPro:IPR001851"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCY9"
FT                   /protein_id="CAE35763.1"
FT                   /translation="MTDLFGIPIQALLGQLLLGLVNGSFYAMLSLGLAVIFGLLNVINF
FT                   AHGALYMLGAFVAWMGLSYLGLNYWIMLILAPLVVGLFGILIEKLLLRHLYKLDHLYGL
FT                   LLTFGLTLLIEGLFRSFYGVSGQPYPTPEALRGATNLGFMVLPNYRAWVVVASITVCLA
FT                   TWFVIERTRLGALLRAGTENPRLVEAFGVNVPRMITLTYGFGVALAGFAGVLAAPVLQI
FT                   SPLMGSNLIIVVFAVVVIGGMGSIMGAIVTGLGLGVIEGLTKVFWPEASNTVVFIIMAI
FT                   VLLLRPAGLFGKEK"
FT   misc_feature    join(181148..181216,181235..181303,181331..181399,
FT                   181436..181504,181583..181642,181730..181798,
FT                   181826..181894,181931..181999)
FT                   /note="8 probable transmembrane helices predicted for
FT                   BB3789 by TMHMM2.0 at aa 4-26, 33-55, 65-87, 100-122,
FT                   149-168, 198-220, 230-252 and 265-287"
FT   misc_feature    181172..182020
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF02653, DE Branched-chain amino acid
FT                   transport system / permease component, score 1.2e-37"
FT   CDS             182023..183003
FT                   /transl_table=11
FT                   /locus_tag="BB3790"
FT                   /product="putative branched-chain amino acid transport
FT                   permease"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3573"
FT                   /db_xref="GOA:Q7WCY8"
FT                   /db_xref="InterPro:IPR001851"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCY8"
FT                   /protein_id="CAE35764.1"
FT                   /translation="MNRQLLGYAAFAIIVGILPYVGVYPIFAMKVMCYALFACAFNLLL
FT                   GYTGLLSFGHAAFLGSAAYAAGHALKVWGLPTELGLAFGVAVAALLGLAMGALAIRRSG
FT                   IYFAMITLALAQMVFFFFLQAHFTGGEDGLQGVPRGTLLGTIDLRNDLNLYYVVMGIFA
FT                   LGYFVIWRTVHSPFGQVLKGLRENEPRAISLGYDVDRFKLVAFVLSAAIAGLAGATKTL
FT                   VFVSATLSDATWQMSGLVILMTLIGGLGTLTGPILGAFIVVLLENKVGDFGQMLTRLTG
FT                   LDWFLRLGESVTIVIGLIFVVCVMAFRRGIVGELVALRERRQART"
FT   misc_feature    join(182035..182103,182131..182199,182236..182304,
FT                   182332..182391,182476..182544,182632..182700,
FT                   182737..182805,182875..182943)
FT                   /note="8 probable transmembrane helices predicted for
FT                   BB3790 by TMHMM2.0 at aa 5-27, 37-59, 72-94, 104-123,
FT                   152-174, 204-226, 239-261 and 285-307"
FT   misc_feature    182083..182970
FT                   /note="HMMPfam hit to PF02653, DE Branched-chain amino acid
FT                   transport system / permease component, score 9.9e-08"
FT   CDS             183099..184097
FT                   /transl_table=11
FT                   /locus_tag="BB3791"
FT                   /product="putative solute-binding periplasmic protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3572"
FT                   /db_xref="GOA:Q7WCY7"
FT                   /db_xref="InterPro:IPR007210"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCY7"
FT                   /protein_id="CAE35765.1"
FT                   /translation="MHAPRFVRVALAALASVAALTCAPSASACEIDRPVRFSGLNWESN
FT                   LVMVGIQRFILEKGYGCKTAMEIGETLPMLAALQRGDVDVTPEVWPGQIEGAWKKALAS
FT                   GKVLGVGHVFTAGEGWYVPRYTVERHPDLRRAADLQRYKSTFTDPEDPAKGRIYGCPAG
FT                   WACGTLNENLLKALQLEHDYNLFAPGSGAAQKAAIMSAYKRKRDIVFYYWTPTALVGAL
FT                   DLVKLQLPAFDQAAYTCMTDPRCAKPVPTEFKPNPVVTGLNADFARQAPALHRFFEALT
FT                   VPDEAIGATLGWLENEKAEADDAALYFLRQYGDVWKKWVPADVAQRVQAAL"
FT   misc_feature    183099..183182
FT                   /note="Signal peptide predicted for BB3791 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.998 between residues 28 and 29"
FT   misc_feature    183153..183185
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             184129..184968
FT                   /transl_table=11
FT                   /locus_tag="BB3792"
FT                   /product="putative aminotransferase"
FT                   /EC_number="2.6.1.42"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3571"
FT                   /db_xref="GOA:Q7WCY6"
FT                   /db_xref="HSSP:1I1K"
FT                   /db_xref="InterPro:IPR001544"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCY6"
FT                   /protein_id="CAE35766.1"
FT                   /translation="MEALYWYDGQWLTENPKLLGPSDHAFWMASMVFDGARAFAGLTPD
FT                   LDLHCQRVVRSAEKMLMKPALPWQRIQELCLEAVARFPAGSELYIKPMFFCADGFLLPD
FT                   AEQTQFVLHVFKVPLPGEQGFSACFSSFARSWPNMAPTDAKASCLYPNGQRAIREANLK
FT                   GFDNAIMLDGAGHVAEFATSNLWIARNGRIATPVDNGTFLNGITRQRVLALLRADGVTV
FT                   DERALTRADVEEADEVFSTGNYGKVVHVNRVEARSLSYGPLARHAYRLYMDYAAGGR"
FT   misc_feature    184150..184944
FT                   /note="HMMPfam hit to PF01063, DE Aminotransferase class
FT                   IV, score 1.7e-19"
FT   CDS             complement(185015..185767)
FT                   /transl_table=11
FT                   /locus_tag="BB3793"
FT                   /product="putative branched-chain amino acid transport
FT                   system protein"
FT                   /db_xref="GOA:Q7WCY5"
FT                   /db_xref="HSSP:1JI0"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCY5"
FT                   /protein_id="CAE35767.1"
FT                   /translation="MSQAPILEVRQLSARYGKVGALSGADLQVPAGSIVTVIGANGAGK
FT                   STMLNAVMGALPQTGHAAGQVQYAGADVSGWQVERRVAAGMSLVPERRELFGSMSVEDN
FT                   LLLGGFRRYRARESGWRDTLQEVFDLFPRLRERRSQQAGTLSGGERQMLAVGRALMAKP
FT                   RLLMLDEPSLGLAPRIVREIFHIIARLRETGVAILLVEQNARAALQVADYGYVLETGEI
FT                   VLHGPARELAGNPRVIESYLGLGKGAQD"
FT   misc_feature    complement(185108..185674)
FT                   /note="HMMPfam hit to PF00005, DE ABC transporter, score
FT                   1e-38"
FT   misc_feature    complement(185291..185335)
FT                   /note="PS00211 ABC transporters family signature."
FT   misc_feature    complement(185630..185653)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             complement(185764..187602)
FT                   /transl_table=11
FT                   /locus_tag="BB3794"
FT                   /product="putative branched-chain amino acid transport
FT                   system protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3570"
FT                   /db_xref="GOA:Q7WCY4"
FT                   /db_xref="HSSP:1G9X"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCY4"
FT                   /protein_id="CAE35768.1"
FT                   /translation="MNRFLLIAFIVVLAGLPLLSATPEFWITQLNYIGLAAMVALGLVL
FT                   LTGVGGLTSFGQAAFVGLGAYTTALLTTQYDISPWLALPVGLLVTAVVAFLLGLITLRL
FT                   SGHYLPLGTIAWGLSLYYLFGNLDWLGKHDGIAGIEPISLFGWSLASGRHIYYLIWVFV
FT                   LLALWATRNLLDSRPGRAIRALKSGAGMAESMGVNTGIYKIVIFVWAALLACLSGWLYA
FT                   HMQRAVSPSPFGLNYGIEYLFMAVVGGAGHVWGALLGSAVILGIKDQLQNILPKLIDTN
FT                   ANFELIFFGVLMILVLQYASNGLWPILSGWWERVTGAAGSRRNMAPPPQAPALPHRARP
FT                   QAGELVLEVDSIRKEFGGLVAVNDITFKVRAGEIMGLIGPNGAGKSTTFNLISGVLPAT
FT                   RGQVRFLGDRIDGRSAREIAKRGVGRTFQHVQLLPTMSVLENVALGAHMRSDVGVLSGA
FT                   LHSERAREAQLLHEAAQQLQRVGLGDYLYEQAGNLALGQQRILEIARALACDPVLLLLD
FT                   EPAAGLRYKEKQELAKVLEQLRAEGLSILLVEHDMDFVMRLTNHLVVMDFGTKLAEGVP
FT                   ADVQKNPAVLEAYLGGIDDDLPDAGQGAPAAAGGAQ"
FT   misc_feature    complement(185899..186489)
FT                   /note="HMMPfam hit to PF00005, DE ABC transporter, score
FT                   3.4e-56"
FT   misc_feature    complement(186445..186468)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    complement(186676..187539)
FT                   /note="HMMPfam hit to PF02653, DE Branched-chain amino acid
FT                   transport system / permease component, score 6.5e-11"
FT   misc_feature    complement(join(186679..186747,186808..186876,
FT                   186934..187002,187081..187140,187228..187287,
FT                   187306..187374,187417..187485,187522..187590))
FT                   /note="8 probable transmembrane helices predicted for
FT                   BB3794 by TMHMM2.0 at aa 5-27, 40-62, 77-99, 106-125,
FT                   155-174, 201-223, 243-265 and 286-308"
FT   misc_feature    complement(187543..187602)
FT                   /note="Signal peptide predicted for BB3794 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.999) with cleavage site
FT                   probability 0.971 between residues 20 and 21"
FT   CDS             complement(187608..188645)
FT                   /transl_table=11
FT                   /locus_tag="BB3795"
FT                   /product="branched-chain amino acid transport system
FT                   permease protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3569"
FT                   /db_xref="GOA:Q7WCY3"
FT                   /db_xref="InterPro:IPR001851"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCY3"
FT                   /protein_id="CAE35769.1"
FT                   /translation="MDSSIALILLQDGVVNGAIYALLGMALVLVFAVTRVIFIPQGEFV
FT                   AFGALTLAMLVDGRVPGTAYLLPLLGGVCLLLELVRALRTGAWGAMPKVLAGCVALPLA
FT                   LLWLTDSYAAQGTSLWLNMLLTLALVIPMGPMVYRIVYQPLAEATVLVLLIVSVAVHFA
FT                   LMGLALVFFGAEGWRTPAFVSGQVDLGFSTWSAQSLFVVATCALLIVALWLFFGKTLYG
FT                   RALRATAVNRRGARLVGISTTMSGSLTFTLAVSIGAMSGMLIAPITTVYYDTGFLIGLK
FT                   GFVGAIIGGLVSYPVAAAGALLVGILEAFSSFWASSYKEVIVFTLIIPVLVWRSFSSRH
FT                   VDEEE"
FT   misc_feature    complement(187617..188636)
FT                   /note="HMMPfam hit to PF02653, DE Branched-chain amino acid
FT                   transport system / permease component, score 1.3e-06"
FT   misc_feature    complement(join(187647..187715,187734..187802,
FT                   187869..187937,187998..188066,188130..188198,
FT                   188223..188291,188319..188387,188406..188474,
FT                   188532..188609))
FT                   /note="9 probable transmembrane helices predicted for
FT                   BB3795 by TMHMM2.0 at aa 13-38, 58-80, 87-109, 119-141,
FT                   150-172, 194-216, 237-259, 282-304 and 311-333"
FT   CDS             complement(188807..189970)
FT                   /transl_table=11
FT                   /locus_tag="BB3796"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3568"
FT                   /db_xref="InterPro:IPR001828"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCY2"
FT                   /protein_id="CAE35770.1"
FT                   /translation="MRKHFGLSAVAAAVALSLPLIASAQVKVGVTIAATGPAASLGIPE
FT                   RNTVALLPKEVDGTKIEWIVLDDATDTTQAVKNSRKLASEDKVDVLVGTSITPGSLAMV
FT                   DVAAEAKVPMISVAASAKIVEPVDDKRRWVFKTPQNDALMASALADAMVKAKIKTLGFI
FT                   GFADAYGDGWLAVMQAAAKAKGIEITAVEKYGRTDTSVTGQVLKLVGAKPDAILIAGAG
FT                   TPSALPQKELRARNYGGVIYQTHGAANNDVLRVCGKDCDGMLLPAGPLLVAAQLPDSNP
FT                   VKQSALAYTQAYEKTHGAGSTNTFGGHMWDAGQLIVAALPTALKSGAKPGTPEFRAAMR
FT                   DALEGIKNLPASQGVFNMSATDHAGFDERSRVMVKVEGGKWVYQPDL"
FT   misc_feature    complement(189899..189970)
FT                   /note="Signal peptide predicted for BB3796 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.780 between residues 24 and 25"
FT   CDS             complement(190203..190760)
FT                   /transl_table=11
FT                   /locus_tag="BB3797"
FT                   /product="BioY family protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3567"
FT                   /db_xref="InterPro:IPR003784"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCY1"
FT                   /protein_id="CAE35771.1"
FT                   /translation="MTTKDTVLVALFAALIVVLSLMPPIPLPAIPVPVTLQTLGAMLAG
FT                   AMLGPLRGALACLLYLVLAAIGLPVLPGGRGGLGVFFGPTGGFLVGMVAGACVTGWLAR
FT                   RLALRAAGTWRGLAGYVAACVLGGIVVVYAVGVPWLAGVTQMGMAKAWAAVAVFLPGDL
FT                   AKAAVAAWVASRVERVWPVLGR"
FT   misc_feature    complement(190221..190688)
FT                   /note="HMMPfam hit to PF02632, DE BioY family, score
FT                   2.5e-24"
FT   misc_feature    complement(join(190242..190310,190344..190412,
FT                   190455..190523,190548..190616,190674..190742))
FT                   /note="5 probable transmembrane helices predicted for
FT                   BB3797 by TMHMM2.0 at aa 7-29, 49-71, 80-102, 117-139 and
FT                   151-173"
FT   misc_feature    complement(190470..190502)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    complement(190674..190760)
FT                   /note="Signal peptide predicted for BB3797 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.908) with cleavage site
FT                   probability 0.395 between residues 29 and 30"
FT   CDS             complement(190804..191397)
FT                   /transl_table=11
FT                   /locus_tag="BB3798"
FT                   /product="putative cobalt transport protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3566"
FT                   /db_xref="GOA:Q7WCY0"
FT                   /db_xref="InterPro:IPR003339"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCY0"
FT                   /protein_id="CAE35772.1"
FT                   /translation="MIEPLYVAGASFLHRLPAGLKLAALALAGVGLFLLSDWRVLAAVL
FT                   AGAALLVWRSGVGAAAWWRQTRGLALIVLAVGLFTGLMQGWPHAAVVVLRVAALIGLAM
FT                   AVTLTTPVPALIDACERALRPAERLGLLNAAQVALALALALRFIPEIWRNYQEIREAQA
FT                   ARGLGAHPLALLVPLVVRTLKRAEEVAQAIDARG"
FT   misc_feature    complement(190810..191373)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF02361, DE Cobalt transport protein,
FT                   score 6.6e-13"
FT   misc_feature    complement(join(190954..191013,191050..191118,
FT                   191128..191196,191215..191283,191296..191364))
FT                   /note="5 probable transmembrane helices predicted for
FT                   BB3798 by TMHMM2.0 at aa 12-34, 39-61, 68-90, 94-116 and
FT                   129-148"
FT   CDS             complement(191394..192071)
FT                   /transl_table=11
FT                   /locus_tag="BB3799"
FT                   /product="ABC transporter ATP-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3565"
FT                   /db_xref="GOA:Q7WCX9"
FT                   /db_xref="HSSP:1US8"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCX9"
FT                   /protein_id="CAE35773.1"
FT                   /translation="MLIEFDQAVVATPQAQVLHGVSLRLSERRVGVIGPNGAGKSTLAR
FT                   LVNGLALPSSGRVLVDGLDTRNQVKDVRRRVGFVFQNPENQIVFPIVREDLAFGLKKQG
FT                   LAPAERDARIAAALERLGVGHLAERTSHTLSGGERQLVAMASVLVMAPQLVVFDEPTTQ
FT                   LDLRNRNRVAEAIAALPQQAIVVSHDLDLLAGYDRVLAVVDGRIAADGEPAAVLGWYRE
FT                   HCA"
FT   misc_feature    complement(191457..191993)
FT                   /note="HMMPfam hit to PF00005, DE ABC transporter, score
FT                   1.9e-42"
FT   misc_feature    complement(191628..191672)
FT                   /note="PS00211 ABC transporters family signature."
FT   misc_feature    complement(191949..191972)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             192123..192524
FT                   /transl_table=11
FT                   /gene="msrB"
FT                   /locus_tag="BB3800"
FT                   /product="peptide methionine sulfoxide reductase"
FT                   /EC_number="1.8.4.6"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3564"
FT                   /note="Similar to Escherichia coli peptide methionine
FT                   sulfoxide reductase MsrB or b1778 or z2817 or ecs2487
FT                   SWALL:MSRB_ECOLI (SWALL:P39903) (137 aa) fasta scores: E():
FT                   4.4e-26, 49.21% id in 128 aa, and to Ralstonia solanacearum
FT                   peptide methionine sulfoxide reductase MsrB or rsc1747 or
FT                   rs02935 SWALL:MSRB_RALSO (SWALL:Q8XYL1) (128 aa) fasta
FT                   scores: E(): 3.2e-34, 67.74% id in 124 aa"
FT                   /db_xref="GOA:Q7WCX8"
FT                   /db_xref="InterPro:IPR002579"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCX8"
FT                   /protein_id="CAE35774.1"
FT                   /translation="MEKIRKTDAEWRTQLTPEEYAVARQKGTERAFSGRYWDTSTPGIY
FT                   RCIGCGTPLFASDTKFDAGCGWPSYFEPLAPERVREELDTSHGMVRTEVLCNICDAHLG
FT                   HVFPDGPEPTGLRYCINSLSLKFEPLEDE"
FT   misc_feature    192144..192512
FT                   /note="HMMPfam hit to PF01641, DE SelR domain, score
FT                   1.2e-80"
FT   CDS             192521..193090
FT                   /transl_table=11
FT                   /locus_tag="BB3801"
FT                   /product="putative intracellular septation protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3563"
FT                   /db_xref="GOA:Q7WCX7"
FT                   /db_xref="InterPro:IPR006008"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCX7"
FT                   /protein_id="CAE35775.1"
FT                   /translation="MKKFLFDLFPLILFFVAYRYADIYAATAVAITASIAQILWLRLTG
FT                   KAIEGMHWINLSVIVIFGGATLWLHSDVFIKWKPTVLYWLFGGALLGARYLFGRNLVRR
FT                   LLGKQIALPDPVWERLNLSWALFFVAAGAVNLYVAFSGHFTESQWVNFKVFGLMGLLVA
FT                   FVIAQSLWLGKHLQASDTPDQDRNED"
FT   misc_feature    192521..192583
FT                   /note="Signal peptide predicted for BB3801 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.874) with cleavage site
FT                   probability 0.522 between residues 21 and 22"
FT   misc_feature    join(192578..192643,192677..192730,192758..192826,
FT                   192884..192952,192980..193039)
FT                   /note="5 probable transmembrane helices predicted for
FT                   BB3801 by TMHMM2.0 at aa 20-41, 53-70, 80-102, 122-144 and
FT                   154-173"
FT   CDS             193112..193396
FT                   /transl_table=11
FT                   /locus_tag="BB3802"
FT                   /product="BolA-like protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3562"
FT                   /db_xref="InterPro:IPR002634"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCX6"
FT                   /protein_id="CAE35776.1"
FT                   /translation="MSENSERIEIIRARLAALNPIILEIQDESHLHAGHEGAKGGAGHF
FT                   RVHIVASCFAGLTPVARHRLVYHHLQDLLPYPIHALALDAQAPSPDNAK"
FT   misc_feature    193148..193384
FT                   /note="HMMPfam hit to PF01722, DE BolA-like protein, score
FT                   5.4e-16"
FT   CDS             193425..194201
FT                   /transl_table=11
FT                   /locus_tag="BB3803"
FT                   /product="putative peptidyl-prolyl cis-trans isomerase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3561"
FT                   /db_xref="GOA:Q7WCX5"
FT                   /db_xref="HSSP:1JNS"
FT                   /db_xref="InterPro:IPR000297"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WCX5"
FT                   /protein_id="CAE35777.1"
FT                   /translation="MKRIAMLAAACVIAVPAFAQNVATVNGKPITQKSLDEFVKLVVSQ
FT                   GATDSPQLREQIKQEMINRQVFVQAAEKDGVAKQADVQTEIELARQGILVRALMADYLQ
FT                   KHPVTDAQVKAEYEKIKKEQAGKMEYKVRHILVEDEKTANDLLAQVKSNKSKFDDLAKK
FT                   NSKDPGSAERGGDLGWAPATNYVQPFAEAVTKLKKGQLVDKPVQTQFGWHVIQVDDTRP
FT                   VEFPAMDQVRPQLEEMLRQQTLANYQKQLREQAKIQ"
FT   misc_feature    193425..193481
FT                   /note="Signal peptide predicted for BB3803 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.997 between residues 19 and 20"
FT   misc_feature    193803..194081
FT                   /note="HMMPfam hit to PF00639, DE PPIC-type PPIASE domain,
FT                   score 3.3e-35"
FT   misc_feature    193893..193958
FT                   /note="PS01096 PpiC-type peptidyl-prolyl cis-trans
FT                   isomerase signature."
FT   CDS             complement(194286..196376)
FT                   /transl_table=11
FT                   /gene="ligA"
FT                   /gene_synonym="lig"
FT                   /gene_synonym="dnaL"
FT                   /gene_synonym="pdeC"
FT                   /gene_synonym="lop"
FT                   /locus_tag="BB3804"
FT                   /product="DNA ligase"
FT                   /EC_number="6.5.1.2"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3560"
FT                   /db_xref="GOA:Q7WCJ7"
FT                   /db_xref="HSSP:1B04"
FT                   /db_xref="InterPro:IPR004149"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WCJ7"
FT                   /protein_id="CAE35778.1"
FT                   /translation="MAQAGPTPQQAIARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRD
FT                   LQALEAEHPELVTPDSPTQRVGAAPLAEFGSVRHAVPMLSLGNAFDEEDVRAFDKRVAD
FT                   TLRGAGLLGLDQQVEYFCELKLDGLAISLRYEEGRLAQAATRGDGQTGEDVTANIRTIK
FT                   GVPLRLHGAPRVLEVRGEVLMNRAEFERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRI
FT                   TAQRPLRFFAYSWGEVHGLPEGMPTRFDEPAPGVRVASTLPRDTHGGMLDWLAELGLPV
FT                   NLRHNHRERGADGLLAFYERIGKLRADLPYDIDGVVYKVDALPSQRVLGFVARAPRFAL
FT                   AHKFPAEEAVTQLLGIEVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEIRRKDVR
FT                   IGDTVIVRRAGDVIPEVVGPVLEKRPADAREFVMLTACPICGSAIERPEGEAIARCTGG
FT                   LFCAAQRKQTLLHAAGRKALDIEGLGEKLIDQLVDADRVKSLADIYSLTAFELAALERM
FT                   GKKSAENLVAAIDQARRPALGRLLFALGIRHVGETTARDVARHFGSMERIMDASEEALL
FT                   AVPDVGGVVAGSIRRFFAEPHNREIVEQLTQQGVHPQAEAEPEGTSLAGKTFVLTGTMP
FT                   NWTRDEATRRILAAGGKVSGSVSKKTAYLVTGEDAGSKLTKAQELGVPVLDEDGLKALL
FT                   GL"
FT   misc_feature    complement(194292..194519)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF00533, DE BRCA1 C Terminus (BRCT)
FT                   domain, score 1.4e-10"
FT   misc_feature    complement(194496..194519)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    complement(194988..195074)
FT                   /note="HMMPfam hit to PF03119, DE NAD-dependent DNA ligase
FT                   C4 zinc finger domain, score 3.6e-10"
FT   misc_feature    complement(195084..195332)
FT                   /note="HMMPfam hit to PF03120, DE NAD-dependent DNA ligase
FT                   OB-fold domain, score 1.3e-52"
FT   misc_feature    complement(195252..195299)
FT                   /note="PS01056 NAD-dependent DNA ligase signature 2."
FT   misc_feature    complement(195336..196361)
FT                   /note="HMMPfam hit to PF01653, DE NAD-dependent DNA ligase
FT                   adenylation domain, score 3.6e-167"
FT   misc_feature    complement(195915..196004)
FT                   /note="PS01055 NAD-dependent DNA ligase signature 1."
FT   CDS             complement(196376..197434)
FT                   /transl_table=11
FT                   /locus_tag="BB3805"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3559"
FT                   /db_xref="GOA:Q7WCX4"
FT                   /db_xref="InterPro:IPR007449"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCX4"
FT                   /protein_id="CAE35779.1"
FT                   /translation="MSDLQIGLIALGVLLILLVLGFNWWQDRRVRRRMQAHFPSTEQDP
FT                   LLGAGAQDRTAAGATRREPGMGGAAAGAAPAAAPANPDTDDQEEPDPACEVVIEIHFSE
FT                   PVRGADLLPYLQSLRQAGRKPLRVFAATAEQRHRARIHSEESYANMQLAVLLANRSGPL
FT                   TAIEWSQAWARAQDLADRFEASVEGPDQQEVLEQAARLDDTCAALDTQVGLTLLLGVAQ
FT                   PAAEVLAVARDLGFAADGARLAWLADNGAVRFTLSRADGAAFDAGMGGIERLYLLLDVP
FT                   CSPADQRAFGRMVDVGRDLAARLRAELVDDQGRPLQDGADAVIDERLQVLFEQLDQAGL
FT                   PAGSARAQRVFA"
FT   misc_feature    complement(197357..197425)
FT                   /note="1 probable transmembrane helix predicted for BB3805
FT                   by TMHMM2.0 at aa 4-26"
FT   CDS             complement(197479..201066)
FT                   /transl_table=11
FT                   /locus_tag="BB3806"
FT                   /product="putative chromosome partition protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3558"
FT                   /db_xref="GOA:Q7WCX3"
FT                   /db_xref="HSSP:1E69"
FT                   /db_xref="InterPro:IPR019825"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCX3"
FT                   /protein_id="CAE35780.1"
FT                   /translation="MCAAGPFNAPRSTYPVRHRTVRLTQLKLAGFKSFVDPTVIPVPSQ
FT                   LVGVVGPNGCGKSNIIDAVRWVLGEAKASELRGESMQDVIFNGSGNRKPAARASVEMVF
FT                   DNTEGRAAGQWSAYSEIAVRRVLTRDGTSSYYVNNQQVRRRDIHDIFLGTGLGARGYAI
FT                   IGQGMINRLIEARPEELRVFLEEAAGVSRYKERRRETENRLSDTRENLTRVEDILRELG
FT                   SQLDKLEAQAEVARKYRELQADGEKKQFALWLLKETGARDERERKNQDMARAQNDLEAA
FT                   IAGLRAGEAELESRRQAHYAASDAVHAAQGQLYEANAQVSRLEAEIRHVVDSRNRLQAR
FT                   REQLQAQIAEWNTQQEHCTEQIALAEEDLATGAARTEEARAAAEDAQAGLPAIEARVRD
FT                   AAAGRDDMRAALARVEQNLALVAQTQRDADRQLQTLEQRRERLQQELRELHTPDPERLE
FT                   QLAGDRLAGEDQLEAAQAELATLEGRVPEADAERSRAQAAAQQDAQGLARLEARLAALV
FT                   KLQEDVQKQGALEPWLAKHELAGLGRLWQKLHIEPGWETALEAALRERMAALEVRSLDW
FT                   ARAFADDAPPARLAFYQVPAAAPAPAAPQGQTPLASLLRVTDPDLRTLLNQWLAGLYTA
FT                   ADLTQALAGRASLPAGAAYVVKAGHLVDAHSVRFYAPDSEQAGLLARQQEIENLQREIK
FT                   AQQLIADQARAAVARAEAAWQQVSQAIAPARQRVAEVTRRVHDIQLEHSRLQQQAEQSG
FT                   ERAARLRQDLEELAAHEEDLRATREEAEVRFEALDGELAEHQSRFSDAEIDGETLSAQA
FT                   DAARTRLRELERAAQEAEFAERGVQVRITDLQRNRQLAADQSQRAGTELQQLETDLVDL
FT                   DASASQAGLQDALELRAEREEALTRARLELDNLSALMRGADEERMQQERGLEPLRARIT
FT                   ELQLQEQAARLAEEQFTEQLNAREVDRETLARELAEMPDEWRKASWLQSEVGRISRQVD
FT                   ALGPVNLAALDELNTSRERKTFLDAQQQDLLTAMETLEDAIRKIDRETRELLQETFNTV
FT                   NRHFGELFPKLFGGGEARLTMTGDEILDAGVQVMAQPPGKRNSTIHLLSGGEKALTATA
FT                   LVFALFKLNPAPFCLLDEVDAPLDDANTERYANLVSNMSEQTQFLFISHNKIAMQMAKQ
FT                   LIGVTMQEQGVSRIVAVDIDSAVQMAAEA"
FT   misc_feature    complement(197506..197526)
FT                   /note="PS00307 Legume lectins beta-chain signature."
FT   misc_feature    complement(197512..198117)
FT                   /note="HMMPfam hit to PF02483, DE SMC family, C-terminal
FT                   domain, score 1.2e-74"
FT   misc_feature    complement(200497..201006)
FT                   /note="HMMPfam hit to PF02463, DE RecF/RecN/SMC N terminal
FT                   domain, score 1.1e-51"
FT   misc_feature    complement(200893..200916)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             201269..202579
FT                   /transl_table=11
FT                   /locus_tag="BB3807"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3557"
FT                   /db_xref="InterPro:IPR011701"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCX2"
FT                   /protein_id="CAE35781.1"
FT                   /translation="MKRGFYLVMAAQAFSSLADNALFIAAIALILELSGPDWMAPMMKW
FT                   SFALAYVVLAAFVGAFADSFPKGRVMFITNALKVAGCMLMFSYASIGVPATYQTYLVCA
FT                   AYGLVGIGAAAYSPAKYGIVTEMLPPDLLVKGNSWIEGLTVLSIIIGTVLGGVLISPHV
FT                   SSVLLAHPWLNKLVHTPAEAAILVIALVYVIAALCNLLIPPTHVRYPPQQRSPFKLVRA
FT                   FSGYVCVLWRDKLGQISLAVTTLFWGAGATLQLIVIEWGRSHLGYRLDQASVLMGVAAV
FT                   GTVVGSILAGRIPLRKALSVLPVGAAMGLVVLLMPLVYSPWSVYLLLVTGGLAGFFVVP
FT                   MNALLQHRGHVLLSAGHSIAVQNFNEQLNILLMVAIYTVLLWLELPINIIIVIFGLIVT
FT                   VLMVVFIRWSRRNLSADPALREQIGQEGHGKALDSAH"
FT   misc_feature    201269..201322
FT                   /note="Signal peptide predicted for BB3807 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.992) with cleavage site
FT                   probability 0.962 between residues 18 and 19"
FT   misc_feature    join(201305..201373,201401..201454,201473..201541,
FT                   201551..201619,201680..201748,201806..201874,
FT                   201971..202039,202082..202141,202160..202228,
FT                   202241..202309,202370..202423,202433..202486)
FT                   /note="12 probable transmembrane helices predicted for
FT                   BB3807 by TMHMM2.0 at aa 13-35, 45-62, 69-91, 95-117,
FT                   138-160, 180-202, 235-257, 272-291, 298-320, 325-347,
FT                   368-385 and 389-406"
FT   CDS             complement(202598..203326)
FT                   /transl_table=11
FT                   /locus_tag="BB3808"
FT                   /product="bacteriophage-related DNA polymerase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3556"
FT                   /db_xref="InterPro:IPR005273"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCX1"
FT                   /protein_id="CAE35782.1"
FT                   /translation="MATAEAVRPAAATPRADGPAASPARAPRPPVAAPQRAEPAAEADG
FT                   QAARAAVAARAAGADLGQLQQLVQDCTACGLCQGRRHAVFGMGAQPARWMVVGEAPGEQ
FT                   EDRQGLPFVGRSGKLLDAMLQSVGMSRERDVFIANVIKCRPPGNRNPKPEEIAACSPYL
FT                   RRQIALLNPERILVLGRFAAQTLLGTEATIGNLRGRVHSLQTDEGRSIPVVVSYHPAYL
FT                   LRSPAEKARAWQDLLLAARG"
FT   misc_feature    complement(202604..203074)
FT                   /note="HMMPfam hit to PF03167, DE Uracil DNA glycosylase
FT                   superfamily, score 6.4e-39"
FT   CDS             complement(203481..204728)
FT                   /transl_table=11
FT                   /locus_tag="BB3809"
FT                   /product="putative acetyltransferase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3555"
FT                   /db_xref="GOA:Q7WCX0"
FT                   /db_xref="InterPro:IPR000905"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCX0"
FT                   /protein_id="CAE35783.1"
FT                   /translation="MDLNLLAFETSSSRCGVALLTEHGAEPVVAVLEHEGAQEHAERLL
FT                   PMARELLVRAGLAPEALQAVAFGQGPGGFTGLRVACGVAQGIALGLGIPVLPVVSHEAV
FT                   AEVSGAAADDAVVVALDARMEEVYLAVYLRGDDGQWQTLQAPLLIAAGEVVPWTVHHLD
FT                   AWSARAGRALRVRMAGDAWQVYAASMAAPPGWVRVQAERPQAQAVARLARRAWRDGGGV
FT                   AAELAAPLYVRDKVAFTTAERERGQGGNPRAVSALAATQMLPMAQRDLDEVAELEAQVQ
FT                   SFPWTRGNFADALQAGYPACVLRQDGRLAGFCVMMAAPDVVHLLVIAVPRHLHRQGLGG
FT                   LMLGWCERQARARGLAGVLLEVRPSNATAVQFYERHGYLRIGRRKDYYPAGKGKREDAL
FT                   VMQKTLGEATVGDERA"
FT   misc_feature    complement(203592..203828)
FT                   /note="HMMPfam hit to PF00583, DE Acetyltransferase (GNAT)
FT                   family, score 4.2e-14"
FT   CDS             204858..205592
FT                   /transl_table=11
FT                   /gene="risA"
FT                   /locus_tag="BB3810"
FT                   /product="tresponse regulator protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3554"
FT                   /db_xref="GOA:O88117"
FT                   /db_xref="HSSP:1OPC"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:O88117"
FT                   /protein_id="CAE35784.1"
FT                   /translation="MNTQNTTPTRKILVVDDDPRLRDLLRRYLSEQGFNVFVAEDAKEM
FT                   GKLWQREHFDLLVLDLMLPGEDGLSICRRLRGGHDNTPIIMLTAKAEEIDRIVGLEMGA
FT                   DDYLSKPFNPRELLARINAILRRRGTEEHPGAPSQENESIAFGPYVLNLSTRTLTRNGE
FT                   QVPITTGEFSVLKVFARHPKIPLSRDKLMELARGREYEAFDRSLDVQISRLRKLIEPNP
FT                   SKPVFIQTVWGLGYVFVPDGGS"
FT   misc_feature    204885..205244
FT                   /note="HMMPfam hit to PF00072, DE Response regulator
FT                   receiver domain, score 2e-45"
FT   misc_feature    205344..205562
FT                   /note="HMMPfam hit to PF00486, DE Transcriptional
FT                   regulatory protein, C terminal, score 5.6e-29"
FT   CDS             205597..207021
FT                   /transl_table=11
FT                   /gene="risS"
FT                   /locus_tag="BB3811"
FT                   /product="sensor kinase protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3553"
FT                   /db_xref="GOA:Q7WCW9"
FT                   /db_xref="HSSP:1JOY"
FT                   /db_xref="InterPro:IPR003660"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCW9"
FT                   /protein_id="CAE35785.1"
FT                   /translation="MARPGQERRLVPRMRRLFRNLTSRLRLGLFGRTFLLLAALMLVSL
FT                   GAWLQVFFSMELGPRANQMAQRVITAVNITRTALVYSHTDERSKLLLDLATNEGIQVYP
FT                   RELTDFTEALPDDDYWQRVAQHIRVRFGPETQIAWGVNQVPGFWVSFQIDQDLYWLVFE
FT                   REQIGLTGGIEWLGWGATALLLSLVGAAVSVGFVNRPLSRLARAAQVLSRGETPAPLPE
FT                   QGPLEIRDLNASFNRMAKDLRQAEADRELMLAGISHDLRTPLARMRLEIEMSGVSEDAR
FT                   QAIDEDLGQIDHSIGQLMEYARPAGTLPQLATDISSVLAELYERERSHTASLGGELEAS
FT                   IDPGLRARITALDLKRIVSNLIENARRYGRSSDGLAHLAISVHSEGNILAIEVADRGPG
FT                   IAPEEVDRLLRPFSRGEAARTGVSGAGLGLAIVERLLKHVGGSLRMLPRQGGGLIARIE
FT                   LPKAKFRNYQLDSENQ"
FT   misc_feature    205597..205743
FT                   /note="Signal peptide predicted for BB3811 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.992) with cleavage site
FT                   probability 0.542 between residues 49 and 50"
FT   misc_feature    join(205681..205749,206119..206187)
FT                   /note="2 probable transmembrane helices predicted for
FT                   BB3811 by TMHMM2.0 at aa 29-51 and 175-197"
FT   misc_feature    206119..206328
FT                   /note="HMMPfam hit to PF00672, DE HAMP domain, score
FT                   3.6e-14"
FT   misc_feature    206338..206517
FT                   /note="HMMPfam hit to PF00512, DE His Kinase A
FT                   (phosphoacceptor) domain, score 1.3e-07"
FT   misc_feature    206641..206982
FT                   /note="HMMPfam hit to PF02518, DE Histidine kinase-, DNA
FT                   gyrase B-, and HSP90-like ATPase, score 8.3e-31"
FT   CDS             207084..207632
FT                   /transl_table=11
FT                   /gene="ahpC"
FT                   /locus_tag="BB3812"
FT                   /product="alkyl hydroperoxide reductase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3552"
FT                   /db_xref="GOA:Q7WCW8"
FT                   /db_xref="HSSP:1E2Y"
FT                   /db_xref="InterPro:IPR017936"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCW8"
FT                   /protein_id="CAE35786.1"
FT                   /translation="MKTVGDKLEPFKVTGVKPGFNQHEENGVSAFEDITESSFPGKWKV
FT                   IYFYPKDFTFVCPTEIVGFNKLAKDFEDRDAVLLGGSTDNEFVKLAWRREHPDLNKLGH
FT                   YQFGDTTGALIDQLGVREKGAGVALRATFIVDPDNTIQHVSVNNLNVGRNPEEVLRLLD
FT                   GLQTDELCPCNRSVGGATL"
FT   misc_feature    207120..207566
FT                   /note="HMMPfam hit to PF00578, DE AhpC/TSA family, score
FT                   7.1e-37"
FT   CDS             207688..208206
FT                   /transl_table=11
FT                   /gene="ahpD"
FT                   /locus_tag="BB3813"
FT                   /product="putative antioxidant protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3551"
FT                   /db_xref="HSSP:1ME5"
FT                   /db_xref="InterPro:IPR003779"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCW7"
FT                   /protein_id="CAE35787.1"
FT                   /translation="MEFLSTIKDQLPDWAKDIRLNLDAVIARSTLAPEDALGAALSAAF
FT                   AARSQLLIDAFKGALSETDANAALTASALMGMNNTWYPYVEMTGDAQLKSLPAQLRMNA
FT                   YATHGGVDKKRFELFALAASIIGKCHFCVQSHYENLKKDGLTVEQLRDAGRIASVVNAA
FT                   ALALAAQGK"
FT   CDS             complement(208274..208849)
FT                   /transl_table=11
FT                   /locus_tag="BB3814"
FT                   /product="AraC-family regulatory protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3550"
FT                   /db_xref="GOA:Q7WCW6"
FT                   /db_xref="InterPro:IPR018062"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCW6"
FT                   /protein_id="CAE35788.1"
FT                   /translation="MRSLYIDAALVRGMPDDCAVLDMTALMRELVVRASTDAPSTRDAP
FT                   QRHEASDGALDEEYGLLSALMVAELRRLPRCGLDLPLPESAALRGLCERALADLSAFDS
FT                   AQAQARRLKLSARTLYRRFLDETGLSFARWIQQARLLDAVRRLGDGQAVTDVALDLGYQ
FT                   SPSAFTAMFNRALGCSPREWRRLGEGRE"
FT   misc_feature    complement(208295..208423)
FT                   /note="HMMPfam hit to PF00165, DE Bacterial regulatory
FT                   helix-turn-helix proteins, araC family, score 2.9e-06"
FT   misc_feature    complement(208310..208435)
FT                   /note="PS00041 Bacterial regulatory proteins, araC family
FT                   signature."
FT   misc_feature    complement(208442..208567)
FT                   /note="HMMPfam hit to PF00165, DE Bacterial regulatory
FT                   helix-turn-helix proteins, araC family, score 25"
FT   CDS             208991..210412
FT                   /transl_table=11
FT                   /locus_tag="BB3815"
FT                   /product="putative transport protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP3549"
FT                   /db_xref="InterPro:IPR011701"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCW5"
FT                   /protein_id="CAE35789.1"
FT                   /translation="MPMRLDVRVGRIAVAPRDDSRRARMGNRDGFGGGFVHFSIVLVEF
FT                   KKDRIAQPAHTGMHPHYDAFAMDAPAASTPAPPAAFPRSVTLLLNVAHALDHMFLLIFA
FT                   TAVAAIAADFGFARWEDLMPFGVAAFFLFGLASWPAGRLGDLWGRRRMMLLFFFGLGAA
FT                   ALLCALTRNAWQLAGAMALIGAFAAIYHPVGIPMIVQHATNPGAVIGVNGLAGNLGVAL
FT                   AALVTGVLVQWLGWRAAFAVPGLLSIACGLLFMRVCPAEDEPPARRKSRASVLLDPRQL
FT                   ARAFAVMTAAAVTGSLLFNFTTNGNAQLLDQRFRGIVEDPVALGAMLAFIYVVASLTQV
FT                   VVGRLIDRVALKPLYLCMVLAQIPLLAWAAVAQGWALFAALLGTMVFIFGAIPFTDAMI
FT                   VRYVDDRSRSRVAGMRLTVSFGVSSLAVWLLGPVVKQAGFGSLFAGMAVIAACTATMVL
FT                   LLPSERPEPQSAPAA"
FT   misc_feature    209255..210370
FT                   /note="HMMPfam hit to PF00083, DE Sugar (and other)
FT                   transporter, score 0.0046"
FT   misc_feature    join(209282..209341,209354..209413,209450..209509,
FT                   209519..209587,209606..209674,209702..209770,
FT                   209831..209899,209957..210016,210035..210103,
FT                   210116..210184,210221..210289,210302..210370)
FT                   /note="12 probable transmembrane helices predicted for
FT                   BB3815 by TMHMM2.0 at aa 98-117, 122-141, 154-173, 177-199,
FT                   206-228, 238-260, 281-303, 323-342, 349-371, 376-398,
FT                   411-433 and 438-460"
FT   CDS             complement(210421..210909)
FT                   /transl_table=11
FT                   /gene="ispF"
FT                   /gene_synonym="mecS"
FT                   /locus_tag="BB3816"
FT                   /product="2C-methyl-D-erythritol 2,4-cyclodiphosphate
FT                   synthase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0866"
FT                   /db_xref="GOA:Q7WCW4"
FT                   /db_xref="InterPro:IPR003526"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WCW4"
FT                   /protein_id="CAE35790.1"
FT                   /translation="MNIPFRVGQGFDVHALVEGRPLIIGGVTIAHTHGLLGHSDADVLL
FT                   HAVTDALLGGAGLGDIGRHFPDTDQAYRGADSRVLLRAAFDKVRAAGWAPVNVDATIHA
FT                   QAPKIGPHAAAMVANIAADLALDAGAVNIKAKTNEGLGYLGRKEGIAANVVVLLARAG"
FT   misc_feature    complement(210427..210897)
FT                   /note="HMMPfam hit to PF02542, DE YgbB family, score
FT                   1.1e-74"
FT   CDS             complement(210906..211589)
FT                   /transl_table=11
FT                   /gene="ispD"
FT                   /locus_tag="BB3817"
FT                   /product="4-diphosphocytidyl-2c-methyl-D-erythritol
FT                   synthase"
FT                   /EC_number="2.7.7.-"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0865"
FT                   /db_xref="GOA:Q7WCW3"
FT                   /db_xref="InterPro:IPR018294"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WCW3"
FT                   /protein_id="CAE35791.1"
FT                   /translation="MSESLIAIVPAAGIGARASLPGEAAVPKQYRPLAGQPMLRHAVRA
FT                   LLADPRIVQVRVAVSAGDGWVEQALAGLPRTVWRPCGGPNRADTVAAALADSGAAADDW
FT                   ILVHDAARPGLPAAALARLIDACLDDAVGGLLALPVADTVKAGRQRVSRTVDRDGLWLA
FT                   QTPQMFRAGLLRDALARARAAGLAVTDEASAVEAAGHAPRLVAGALRNFKVTWPDDFEL
FT                   MEKWL"
FT   misc_feature    complement(210915..211577)
FT                   /note="HMMPfam hit to PF01128, DE Uncharacterized protein
FT                   family UPF0007, score 5.6e-57"
FT   misc_feature    complement(211518..211589)
FT                   /note="Signal peptide predicted for BB3817 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.612) with cleavage site
FT                   probability 0.529 between residues 24 and 25"
FT   CDS             211619..215074
FT                   /transl_table=11
FT                   /gene="mfd"
FT                   /locus_tag="BB3818"
FT                   /product="transcription-repair coupling factor"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0864"
FT                   /db_xref="GOA:Q7WCW2"
FT                   /db_xref="HSSP:1GM5"
FT                   /db_xref="InterPro:IPR004576"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCW2"
FT                   /protein_id="CAE35792.1"
FT                   /translation="MPDLTPPAVPIPATATTLSALKPGARFTQPRPPGSGDGWLLADLA
FT                   RQAGKPLVVLTADPLEAQRLADEIPQFAPELRVRQLPDWETLPYDAFSPHQDLISQRLR
FT                   TLHALMNQGVDILTVPVTTALYRLAPPAFLAAYTFSFKQKDRLDEAALRAQLTLANYSH
FT                   VTQVTAPGEFCLRGGLIDLFPMGSVVPYRLDLFDDEIESIRSFDVDTQRSLYPVGEVQL
FT                   LPGREFPMDEEARNRFRARFREVFEGDPSRALPYKDIGNGIAFAGIEYYLPLFFEQTAT
FT                   LFDYLAADTITVTVGDIDDAMQRFAHDTRSRYDFLKVDRERPVLPPDTLFLDHEALFAR
FT                   LKDFPRLALMAERPHPDFAAAPDVAVARRADDPVARLRALLAQTGDRVLLCADSAGRRE
FT                   TLAQMLGEHGLAPEAQADSIQAFLDDGARFGLAVAPLSAGFCVPGGALLFLTENDLYPG
FT                   HAGVTRRGKRTQERTSNVEAMVRDLAELRAGDPVVHAQHGIGRYHGLVNMDMGEGEMEF
FT                   LHLEYASGSTLYVPVSQLHVIARYSGADPDAAPLHQLGSGQWDKARRKAARQVRDTAAE
FT                   LLALYAQRAAREGYAFKLPMSDYEAFAEGFGFEETPDQAAAIQAVIMDMTSGRPMDRLV
FT                   CGDVGFGKTEVALRAAFLAVANGKQVALLCPTTLLAEQHAQTFSDRFADWPVRVVELSR
FT                   FRSAKEVAAAVEGINDGRVDIVIGTHKILSKDVRFKRLGLVIIDEEHRFGVRQKETLKA
FT                   LRAEVDVLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAIKTFVRREDGSTIREALL
FT                   RELKRGGQVYFLHNEVETIHNRRARLEELVPEARIAVAHGQMPERELEQVMKGFYQQRH
FT                   NVLLCTTIIETGIDIPTANTIVIHRADRFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDA
FT                   ITNNAKKRLEAIQAMEELGSGFYLAMHDLEIRGTGEILGDSQSGNIQEVGFSMYNEMLN
FT                   EAVRALKAGEEPDLDAPFNLACEVNLHAPALLPSDYCPDVHGRLAIYKRLSHADGEDDL
FT                   IRIQEELIDRFGKLPEAAQTLLATHRLRLAAQPLGIVKIDASETQALLQFGAKTTVDPL
FT                   RIIELVQRQRHIKLSGQDKLRVEIKAPQIAARADAVRAVLRALK"
FT   misc_feature    213416..214006
FT                   /note="HMMPfam hit to PF00270, DE DEAD/DEAH box helicase,
FT                   score 2.9e-36"
FT   misc_feature    213527..213550
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    214148..214366
FT                   /note="HMMPfam hit to PF00271, DE Helicase conserved
FT                   C-terminal domain, score 2.7e-19"
FT   misc_feature    214658..215020
FT                   /note="HMMPfam hit to PF03461, DE TRCF domain, score
FT                   3.4e-37"
FT   CDS             215110..215970
FT                   /transl_table=11
FT                   /gene="serB"
FT                   /locus_tag="BB3819"
FT                   /product="phosphoserine phosphatase"
FT                   /EC_number="3.1.3.3"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0863"
FT                   /db_xref="GOA:Q7WCW1"
FT                   /db_xref="HSSP:1L7O"
FT                   /db_xref="InterPro:IPR004469"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCW1"
FT                   /protein_id="CAE35793.1"
FT                   /translation="MTIHHLVIQSPALAAEHAEQLAALAQAQGVTRISTTAARLLDVQQ
FT                   DGDTRAQVRHWAETHGVDAAFVPAGLALADCRILAMDMDSTLINIECIDEIAAVAGVGA
FT                   QVAQITEAAMRGEIKDFSESLRRRVALLAGAPAAALERVYAEKLRLNPGAERLLASVQA
FT                   AGIQTLLVSGGFTFFTERLRERLGLDHAHANTLEVDADGKLTGRVLGDILDGDAKAAHL
FT                   AALAQRLSARPEQIIAIGDGANDLKMLARAGFAVAYHAKPIVREQTPYALNVCGLDGVL
FT                   NWFEK"
FT   misc_feature    215335..215895
FT                   /note="HMMPfam hit to PF00702, DE haloacid
FT                   dehalogenase-like hydrolase, score 3.3e-24"
FT   CDS             complement(216109..217026)
FT                   /transl_table=11
FT                   /locus_tag="BB3820"
FT                   /product="probable LysR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0862"
FT                   /db_xref="GOA:Q7WCW0"
FT                   /db_xref="HSSP:1IXC"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCW0"
FT                   /protein_id="CAE35794.1"
FT                   /translation="MNVTFRQLTAFIEVASSRSFSQAAQALHVTQPALTAMIQKLEAQL
FT                   GVVLFTRTRRGAELTTTGRELLPELQRILANLEVVIEDVRGAASPRGGTVTLACIPSLS
FT                   NTWIPSLIARVEQAYPRIKVILKDAMTENRSIHEMLRTGDIDYGVGSPSVEQDGLEFDL
FT                   LAHDELVAVVPQDHPLARRTLVRWSELAESPLIGMSYQSHVRMLVDEAFAANGISKRPK
FT                   REVSLITTAIGMVRAGLGVSVLPTTAIEVCNVAGLKVLRLHAPRVRRPLGFLHLPTRSL
FT                   SPAARLLLRFVKDAGPIPLGKQPE"
FT   misc_feature    complement(216136..216765)
FT                   /note="HMMPfam hit to PF03466, DE LysR substrate binding
FT                   domain, score 7e-50"
FT   misc_feature    complement(216835..217014)
FT                   /note="HMMPfam hit to PF00126, DE Bacterial regulatory
FT                   helix-turn-helix protein, lysR family, score 1.2e-24"
FT   misc_feature    complement(216880..216972)
FT                   /note="PS00044 Bacterial regulatory proteins, lysR family
FT                   signature."
FT   CDS             217164..218144
FT                   /transl_table=11
FT                   /locus_tag="BB3821"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0861"
FT                   /db_xref="GOA:Q7WCV9"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCV9"
FT                   /protein_id="CAE35795.1"
FT                   /translation="MLLHRVLISLATGVLTLGVLGAAHADAYPTKPIRLVVPYPPGGIT
FT                   DIAARGLARAMSEELKQSVIVENRAGAGGIIGSDYVARAPADGYTLLIGTSATHGTNPS
FT                   TYANLPYSATGSFEPIAAVASSPLLVVVNPSSPVRDVQGLIAHLKANPGKESYASTGTG
FT                   GSLHLTLELFKLMTGTDIQHVPYKGSAPALTDLIGGHVQLMFDNMPSSLPQVKAGSLRA
FT                   LAVTGPQRSALVPELPTVAEAVPGFSSASWVALYAPKNTPAAIVQTLNAAANKGLKSQD
FT                   VLAQFSAAGLEPTGGTSAALDSFMRAEIAKWAEVVKKINLPPSKL"
FT   misc_feature    217164..217238
FT                   /note="Signal peptide predicted for BB3821 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.971 between residues 25 and 26"
FT   misc_feature    217305..218126
FT                   /note="HMMPfam hit to PF03401, DE Uncharacterized protein
FT                   family, UPF0065, score 1e-116"
FT   CDS             218204..219994
FT                   /transl_table=11
FT                   /locus_tag="BB3822"
FT                   /product="putative acetolactate synthase large subunit"
FT                   /EC_number="2.2.1.6"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0860"
FT                   /db_xref="GOA:Q7WCV8"
FT                   /db_xref="HSSP:1JSC"
FT                   /db_xref="InterPro:IPR012000"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCV8"
FT                   /protein_id="CAE35796.1"
FT                   /translation="MQAHTESPPGARTSTGSWARQDLSAYQAANAIADVLKAAGVAQIF
FT                   GQSCPTALFLAADAIGIRQIGYRTENAGAAMADGAARVGRQLTVITAQNGPAAALLVAG
FT                   FSEATKASVPILAIVQEVPRANADKNAFQELDHVQLFASCAKWVRRIDVAERAAEYTER
FT                   AIRIATSGRPGPVVLLVSQDVLTTACPQARPAAQDSDEPLGRFPLDRTVPVAGRLAQLA
FT                   QRLLDAKRPLVVAGGGVHLSGACDALARLQSLAGLPVATTNMGKGAIDETHPLSLGVIG
FT                   NAMGTRSPAKHFMDYVRSADFVLFVGTRTNENGTASWSLFPEQAQYAQIDIDSEEVGRN
FT                   YGAMRFAGDAAATLQALGDALQGRGQAVAARRMAELAPAFEACRQAHRAELAPYAQSDA
FT                   SPMRPERIMAELRASHGDIIWVADASYSSIWLAQFIPCTEAGTRFVTPRGIAGLGWGVP
FT                   MAIGAKIARPGARVICLTGDGGFAHCWAELETARRHEVPLTIVVLNNGVLGFQINAEES
FT                   RFGTHTDVCHFGAIDHVAIAKACGCDGASVSDAASLRQAMAAAERSPVPFVIDVKTEPS
FT                   AFPPISAFESQLRPLGGETP"
FT   misc_feature    218273..218782
FT                   /note="HMMPfam hit to PF02776, DE Thiamine pyrophosphate
FT                   enzyme, N-terminal TPP binding domain, score 1.9e-15"
FT   misc_feature    218843..219343
FT                   /note="HMMPfam hit to PF00205, DE Thiamine pyrophosphate
FT                   enzyme, central domain, score 4.7e-19"
FT   misc_feature    219395..219916
FT                   /note="HMMPfam hit to PF02775, DE Thiamine pyrophosphate
FT                   enzyme, C-terminal TPP binding domain, score 1.4e-29"
FT   misc_feature    219584..219643
FT                   /note="PS00187 Thiamine pyrophosphate enzymes signature."
FT   CDS             219991..220767
FT                   /transl_table=11
FT                   /locus_tag="BB3823"
FT                   /product="short-chain dehydrogenase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0859"
FT                   /db_xref="GOA:Q7WCV7"
FT                   /db_xref="HSSP:1GZ6"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCV7"
FT                   /protein_id="CAE35797.1"
FT                   /translation="MTPREQPRFRGKRALVTGAGAGIGRAIALALAKDGAHVCVLDADH
FT                   AAADETAAMVRQLGAEAATIVHDMGCASVVASIASMQDGFGAFDLLVNNAGISPKQPDG
FT                   RKRMIWETPPEEWQRVIQVNLGGYFFALRAVLPGMVERRAGAVVNIASLAGLRYSSIAG
FT                   ASYATAKNAVVGLTRQAAGEVAEFGIRINCVAPGRIETAMASVAGGEFNETIRASTPLR
FT                   RLGQPADIADAVLFLLSEQAGFITGETLPVTGGRGL"
FT   misc_feature    219991..220086
FT                   /note="Signal peptide predicted for BB3823 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.924) with cleavage site
FT                   probability 0.689 between residues 32 and 33"
FT   misc_feature    220018..220758
FT                   /note="HMMPfam hit to PF00106, DE short chain
FT                   dehydrogenase, score 3.5e-75"
FT   misc_feature    220447..220533
FT                   /note="PS00061 Short-chain dehydrogenases/reductases family
FT                   signature."
FT   misc_feature    220738..220755
FT                   /note="PS00343 Gram-positive cocci surface proteins
FT                   'anchoring' hexapeptide."
FT   CDS             complement(220777..221295)
FT                   /transl_table=11
FT                   /locus_tag="BB3824"
FT                   /product="probable GnaT-family acetyltransferase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0858"
FT                   /db_xref="GOA:Q7WCV6"
FT                   /db_xref="InterPro:IPR016181"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCV6"
FT                   /protein_id="CAE35798.1"
FT                   /translation="MTNMRQVLKTDRLVLEPQSMARFDQWFAMERQRDEAGHRDLTEDQ
FT                   AWLRLCARQGMWDAYACGFYYLLDPVSGEMRGEAGFQFRRRGLGPGFDNHPEAAWAVAS
FT                   AHQGRGLAAEAMQALLAHHDRSSGRQRVVALIARSNLPSLRLAERLGFRGYSDVAFDGA
FT                   AHLLLERAG"
FT   misc_feature    complement(220837..221097)
FT                   /note="HMMPfam hit to PF00583, DE Acetyltransferase (GNAT)
FT                   family, score 1.9e-10"
FT   CDS             complement(221407..223677)
FT                   /transl_table=11
FT                   /gene="bfrE"
FT                   /locus_tag="BB3825"
FT                   /product="probable TonB-dependent receptor for iron
FT                   transport"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0857"
FT                   /db_xref="GOA:Q7WCV5"
FT                   /db_xref="InterPro:IPR010105"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCV5"
FT                   /protein_id="CAE35799.1"
FT                   /translation="MEKPLKSLDSYSASTLANSLAAAIAVPALCLMPGAQAQTSAGVTQ
FT                   LAPVQVEGEASPYQATTVQSSKMTAPLLDTPRTVQVVPQQVIQDQAATNLQDVLRNSPG
FT                   ITMGAGEGGRAGGDLPIIRGQNAAGSIFVDGVRDPSTQIRDTFNLEQVEIIKGPDSVYS
FT                   GRGGAGGSINLVSKTPKARDFAEGSVQIGTDSNYRATADGNWLLGDNAAFRLNLMGNKG
FT                   DVPGRDHAVDFSRWGVAPTLQLGVGTPTRITLGYYHYQDDSMPDYAIPYDPKSGQPVTE
FT                   TQGVSRKNFYGLTGRDFMKSRDDVATLAIDHDFSSKLRLRNVTRYGRSVTDYAATNPDD
FT                   SKGNVPNGLVYRALKAGYYTNKTFTNQTDLSGEFETGSLQHSFDVGFEYSNIKQDKDSY
FT                   TQTIAKGAMPCKVGANDASNPALCTSLWDPDPHDYYPGHLSRNDNPARYSTDTIALYGF
FT                   DTIKFNEQWQASVGLRWDNYRVSGSNIARGRNDPASTPAFYSTSREDNLFNYQLGLAYK
FT                   PVPNGTIYASYGTSSTPSAVAGSNVSDAVTVSNESLAPEKSRTVEVGTKWQLFDDRLTL
FT                   SGALFQDIRKNTSVAVSATETEQIGKAKVRGIELGFSGSITPKWNVYGGYTFMDSELVE
FT                   GAYNSGAVGQDLPNTPRNAFSLWTTYKLVPQLTVGGGAYYVDKVYGNADNGRNADGTPK
FT                   ARWVPSYWRFDAMAAYEFNDHLTAQLNVMNIFDKTYYTKAYAAHYAALGTGRAAVLSFN
FT                   IKY"
FT   misc_feature    complement(221413..221745)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF00593, DE TonB dependent receptor
FT                   C-terminal region, score 1.5e-22"
FT   misc_feature    complement(223567..223677)
FT                   /note="Signal peptide predicted for BB3825 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.997 between residues 37 and 38"
FT   CDS             complement(223889..226120)
FT                   /transl_table=11
FT                   /gene="bfrD"
FT                   /locus_tag="BB3826"
FT                   /product="probable TonB-dependent receptor for iron
FT                   transport"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0856"
FT                   /db_xref="GOA:Q7WCV4"
FT                   /db_xref="InterPro:IPR010105"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCV4"
FT                   /protein_id="CAE35800.1"
FT                   /translation="MKFYSSHPMPESLAAAIAVPLLGLLPAAQAASTAVQLPSVTVEGE
FT                   YSSYQPESAQSPKFTAPLADTPRTVQVIPERLIQDQGASDLEAVLRNAPGISMTAGEGG
FT                   RPASDLPFIRGQNSASSLFVDGLRDPSTQSRDTFNLEQVDVVKGPDSVFSGRGGAGGSI
FT                   NLVTKTPRNQDFTEVQAGIGTAETYRGTIDGNWVLGENTALRLNLLGTRGTVPGRDKAV
FT                   EFSRVGIAPSLRLGLSGPTRVTLGLYHYRHRRVPDYSIPYDPRTGTPITETIGVSRRNF
FT                   YGLVRRDSGDTEDYAATVKWEHDLANGFKVENLARYSRATVEQITTMPELKTADLAKGL
FT                   VYRNLRASYQVNDSFANRTDLRGTFDTGQWRHTFDLGGEFATSRRSRDRYKQEIPDAAS
FT                   PCSPVTDGNNPALCASLRAPDPHVDFPGTVRRNHNPARYHTDILSLYGFDTIAFDEQWQ
FT                   LNLGLRWDHYKTSGRNLPVRGAKPPVYERAARTDNLFNYQLGLVYKPRPDGSVYASYGT
FT                   ASTPSAVSDYAPADSISGTSQQLKPERSEAIEIGTKWQVLDRRLLVTGAMFRETRKNTS
FT                   IEVAEGLRAPAGKSRVTGMELGVAGSLTPRWDVYGGYALLDSKLVRASHKSGAQGQPLP
FT                   SAPRHAFSIWSTYKLLPELTVGAGAFYRSKVYGNADAGYNKDGTPKARWVPAYWRFDAM
FT                   AAYQLNKHLTAQLNVYNLLDKTYYAKTYRSHYAALGPGRSAMLTFKLSY"
FT   misc_feature    complement(223895..224227)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF00593, DE TonB dependent receptor
FT                   C-terminal region, score 1.1e-23"
FT   misc_feature    complement(226031..226120)
FT                   /note="Signal peptide predicted for BB3826 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.962 between residues 30 and 31"
FT   CDS             complement(226421..226750)
FT                   /transl_table=11
FT                   /locus_tag="BB3827"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0855"
FT                   /db_xref="InterPro:IPR016768"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCV3"
FT                   /protein_id="CAE35801.1"
FT                   /translation="MNQTAAVWLLIALALVSANLPFLSERVFALLPYKRAGVHAPKPFW
FT                   LRLCEVLVWYAVVGLLGFAFEAQLGNRFAQAWEFYAITFSLFLVLGYPGFVYRYLYKKR
FT                   RPARA"
FT   misc_feature    complement(join(226448..226516,226559..226621,
FT                   226682..226741))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BB3827 by TMHMM2.0 at aa 4-23, 44-64 and 79-101"
FT   misc_feature    complement(226697..226750)
FT                   /note="Signal peptide predicted for BB3827 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.969) with cleavage site
FT                   probability 0.300 between residues 18 and 19"
FT   CDS             complement(226767..228251)
FT                   /transl_table=11
FT                   /gene="nuoN"
FT                   /locus_tag="BB3828"
FT                   /product="NADH-ubiquinone oxidoreductase, chain N"
FT                   /EC_number="1.6.5.3"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0854"
FT                   /db_xref="GOA:Q7WCV2"
FT                   /db_xref="InterPro:IPR010096"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCV2"
FT                   /protein_id="CAE35802.1"
FT                   /translation="MMQSHLDFALATPEILLLVLGLAILLIDAVSSHPERKTTFVLTLA
FT                   TLAALTVVSLLQWRDGVEGQTFNGLYVTDSLAHLLKVASYIAVAATLVYGRIYAQQRDM
FT                   MQRGGELYVLTLFALLGQMVMISAGNLISIYLGLELMSLALYALIALRREDKVATEAAM
FT                   KYFVLGALASGFLLYGMSMVYGATGHLDLAKIAEVIASGQAKQLPLVFGVVFLVSGLAF
FT                   KLGAVPFHMWLPDVYQGSPTAVTLILGAAPKLAAFAITLRLLVDGLHGLAADWQPMLMI
FT                   LAVLSLAIGNLTAIVQTNFKRMLAYSTISHTGFVLLGLMAGVVDGKPDAAASAYGAALF
FT                   YMLTYVLTTLGTFGIILLLARQGFECEQIDDLKGLNRRNPWHAAIVLLLMFSLAGIPPL
FT                   VGFYAKLAVLQALVEAGHVALAVVAVMFSLIGAFYYLRVVKVVYFDDPVDQPAALAVTA
FT                   GQRSILSLNGALILVLGILPGGLMALCVQVIQASLG"
FT   misc_feature    complement(join(226779..226847,226947..227015,
FT                   227043..227111,227172..227240,227283..227345,
FT                   227364..227417,227460..227528,227565..227633,
FT                   227691..227759,227796..227858,227868..227921,
FT                   227958..228026,228084..228137,228156..228224))
FT                   /note="14 probable transmembrane helices predicted for
FT                   BB3828 by TMHMM2.0 at aa 10-32, 39-56, 76-98, 111-128,
FT                   132-152, 165-187, 207-229, 242-264, 279-296, 303-323,
FT                   338-360, 381-403, 413-435 and 469-491"
FT   misc_feature    complement(226956..227870)
FT                   /note="HMMPfam hit to PF00361, DE
FT                   NADH-Ubiquinone/plastoquinone (complex I), various chains,
FT                   score 1.5e-78"
FT   CDS             complement(228262..229764)
FT                   /transl_table=11
FT                   /gene="nuoM"
FT                   /locus_tag="BB3829"
FT                   /product="NADH-ubiquinone oxidoreductase, chain M"
FT                   /EC_number="1.6.5.3"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0853"
FT                   /db_xref="GOA:Q7WCV1"
FT                   /db_xref="InterPro:IPR010227"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCV1"
FT                   /protein_id="CAE35803.1"
FT                   /translation="MMASDMASNNFPWLTLAIFVPIVFGLLVLALGRDDRPGLTRGLSL
FT                   IGALAGFLVTIPLYTGFDAGTAQMQFVEKASWIEAFNVNYHLGIDGISLWFVLLTAFIT
FT                   IIVVGAGWQVITSRVAQYMAAFLILSGLMVGVFAALDGMLFYVFFEATLIPMYIIIGVW
FT                   GGPNRVYAAFKFFLYTLLGSLLTLVAFVYLWNVSGGSFDIQTWHQTKLGYTPQVLIFVA
FT                   LLAAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPDASHG
FT                   LAGLMIALSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTLGFFIFNTAGLEGAIVQ
FT                   MISHGFVSGAMFLCIGVLYDRMHSRRIADYGGVVNVMPRFVTFFVLFSMANSGLPATSG
FT                   FVGEFLVIMGAVEYNFWIGLLTATALILGASYSLWMLKRVAFGDIGNDRVREMTDLSGR
FT                   EFLILGVMAIAVLFMGIYPKPFTDVMHVSVEALLQHVAVSKL"
FT   misc_feature    complement(join(228334..228402,228463..228531,
FT                   228559..228627,228688..228756,228769..228837,
FT                   228856..228924,228952..229020,229057..229125,
FT                   229183..229251,229270..229338,229348..229401,
FT                   229420..229488,229582..229650,229669..229737))
FT                   /note="14 probable transmembrane helices predicted for
FT                   BB3829 by TMHMM2.0 at aa 10-32, 39-61, 93-115, 122-139,
FT                   143-165, 172-194, 214-236, 249-271, 281-303, 310-332,
FT                   337-359, 380-402, 412-434 and 455-477"
FT   misc_feature    complement(228478..229350)
FT                   /note="HMMPfam hit to PF00361, DE
FT                   NADH-Ubiquinone/plastoquinone (complex I), various chains,
FT                   score 2.3e-94"
FT   CDS             complement(229761..231773)
FT                   /transl_table=11
FT                   /gene="nuoL"
FT                   /locus_tag="BB3830"
FT                   /product="NADH-ubiquinone oxidoreductase, chain L"
FT                   /EC_number="1.6.5.3"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0852"
FT                   /db_xref="GOA:Q7WCV0"
FT                   /db_xref="InterPro:IPR018393"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCV0"
FT                   /protein_id="CAE35804.1"
FT                   /translation="MSSSPNLYLLIALAPLVGAILAGLFGTGFLGRPIGRRGSHVITIL
FT                   GVLISTIGSFVVLGDVLDGHTYDGTVYTWSLIGQTKLEIGFLIDPLSAMMMVVVTSVSL
FT                   MVHIYTIGYMADDPGYQRFFAYISLFTFSMLMLVMSNNMVQLFFGWEAVGLVSYLLIGF
FT                   WYTRPTAIFANMKAFLINRVGDFGFVLGIGLLFAYAGTMHYADVFAQADKLAGETLPGT
FT                   DWMLLTVACICLFIGAMGKSAQVPLHAWLPDSMEGPTPISALIHAATMVTAGIFMVARF
FT                   SPLFELSDTALSFVIVIGAIGALFLGILGIIQNDIKRVVAYSTLSQLGYMTVALGASAY
FT                   SVAIFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMGGLRKYMPITWITFLLGTLALV
FT                   GTPFFSGFYSKEHIIEAAGAANVWGASFAYYSTLIGVFVTSLYSFRVYFLVFHGKERFD
FT                   AHGHGHHGDAHHDDHGHHGGTPHESPWVVTLPLVLLAIPSVLIGAWVVEPMLFGKFFDG
FT                   VIKVLPQHPAMAELGHEWHGWVAFGLHSVQTVPFWLVVAGAVIAWYCYLINPRVPAAIQ
FT                   STFSGVYKLLENKYYVDWINEQIIARGARCLGYGLWQTGDRGIIDGVLVNGSARVVGWV
FT                   AAISRHLQSGFIYHYAFAMIIGIMALVTFFVLIPQ"
FT   misc_feature    complement(join(229770..229838,230073..230132,
FT                   230256..230324,230427..230495,230553..230612,
FT                   230673..230741,230751..230819,230838..230906,
FT                   230934..230993,231054..231107,231150..231218,
FT                   231279..231347,231357..231410,231429..231497,
FT                   231591..231659,231678..231746))
FT                   /note="16 probable transmembrane helices predicted for
FT                   BB3830 by TMHMM2.0 at aa 10-32, 39-61, 93-115, 122-139,
FT                   143-165, 186-208, 223-240, 261-280, 290-312, 319-341,
FT                   345-367, 388-407, 427-449, 484-506, 548-567 and 646-668"
FT   misc_feature    complement(230466..231356)
FT                   /note="HMMPfam hit to PF00361, DE
FT                   NADH-Ubiquinone/plastoquinone (complex I), various chains,
FT                   score 5.6e-101"
FT   misc_feature    complement(231387..231566)
FT                   /note="HMMPfam hit to PF00662, DE NADH-Ubiquinone
FT                   oxidoreductase (complex I), chain 5 N-terminus, score
FT                   3.4e-24"
FT   misc_feature    complement(231708..231773)
FT                   /note="Signal peptide predicted for BB3830 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.937) with cleavage site
FT                   probability 0.646 between residues 22 and 23"
FT   CDS             complement(231791..232099)
FT                   /transl_table=11
FT                   /gene="nuoK"
FT                   /locus_tag="BB3831"
FT                   /product="NADH-ubiquinone oxidoreductase, chain K"
FT                   /EC_number="1.6.5.3"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0851"
FT                   /db_xref="GOA:Q7WCU9"
FT                   /db_xref="InterPro:IPR001133"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCU9"
FT                   /protein_id="CAE35805.1"
FT                   /translation="MTLTLAHYLILGAILFAIGIFGIFLNRRNLIILLMSIELVLLAVN
FT                   MNFVAFSSWFGDIAGQVFVFFILTVAAAEAAIGLAILVLLFRNLNTINVDELDRLKG"
FT   misc_feature    complement(231797..232093)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF00420, DE
FT                   NADH-ubiquinone/plastoquinone oxidoreductase chain 4L,
FT                   score 4.3e-34"
FT   misc_feature    complement(join(231848..231916,231944..232012,
FT                   232025..232090))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BB3831 by TMHMM2.0 at aa 4-25, 30-52 and 62-84"
FT   CDS             complement(232096..232743)
FT                   /transl_table=11
FT                   /gene="nuoJ"
FT                   /locus_tag="BB3832"
FT                   /product="NADH-ubiquinone oxidoreductase, chain J"
FT                   /EC_number="1.6.5.3"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0850"
FT                   /db_xref="GOA:Q7WCU8"
FT                   /db_xref="InterPro:IPR001457"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCU8"
FT                   /protein_id="CAE35806.1"
FT                   /translation="MTFTTVLFYILAFVLVIAAFRVITARSPVTAVLHLILAFANAAMI
FT                   WMLLGAEFLALLLVLVYVGAVMVLFLFVVMMLDIRIDSLRDGLKTYLPLGLVIGVVLVL
FT                   EMAFVLGSTWYGAGPQAPVAGDYNNARALGEVMYTQYVYAIEVGAALLLVGMVAAIALT
FT                   LRRRRDAKYNDPVAAVRVRAKDRFRMVKMTAQSDRAQARVASPSADAQGEQQ"
FT   misc_feature    complement(join(232252..232320,232408..232476,
FT                   232513..232581,232594..232653,232672..232731))
FT                   /note="5 probable transmembrane helices predicted for
FT                   BB3832 by TMHMM2.0 at aa 5-24, 31-50, 55-77, 90-112 and
FT                   142-164"
FT   misc_feature    complement(232252..232734)
FT                   /note="HMMPfam hit to PF00499, DE
FT                   NADH-ubiquinone/plastoquinone oxidoreductase chain 6, score
FT                   1.6e-17"
FT   misc_feature    complement(232672..232743)
FT                   /note="Signal peptide predicted for BB3832 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.881) with cleavage site
FT                   probability 0.278 between residues 24 and 25"
FT   CDS             complement(232761..233249)
FT                   /transl_table=11
FT                   /gene="nuoI"
FT                   /locus_tag="BB3833"
FT                   /product="NADH-ubiquinone oxidoreductase, chain I"
FT                   /EC_number="1.6.5.3"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0849"
FT                   /db_xref="GOA:Q7WCU7"
FT                   /db_xref="HSSP:1A6L"
FT                   /db_xref="InterPro:IPR010226"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WCU7"
FT                   /protein_id="CAE35807.1"
FT                   /translation="MEAIKDFFGSLLLTELFKGLRLTGKYFFKRKVTLRYPMEKTPTSA
FT                   RFRGLHALRRYPNGEERCIACKLCEAVCPALAITIESEQRDDGTRRTTRYDIDLTKCIF
FT                   CGFCEESCPVDSIVETHIHEYHGEKRGDLYFTKDMLLAVGDRYEAEIARRRAEDAPYR"
FT   misc_feature    complement(232872..232937)
FT                   /note="PS00028 Zinc finger, C2H2 type, domain."
FT   misc_feature    complement(232896..232967)
FT                   /note="HMMPfam hit to PF00037, DE 4Fe-4S binding domain,
FT                   score 4.3e-06"
FT   misc_feature    complement(232911..232946)
FT                   /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding
FT                   region signature."
FT   misc_feature    complement(233013..233084)
FT                   /note="HMMPfam hit to PF00037, DE 4Fe-4S binding domain,
FT                   score 0.00022"
FT   misc_feature    complement(233028..233063)
FT                   /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding
FT                   region signature."
FT   CDS             complement(233271..234344)
FT                   /transl_table=11
FT                   /gene="nuoH"
FT                   /locus_tag="BB3834"
FT                   /product="NADH-ubiquinone oxidoreductase, chain H"
FT                   /EC_number="1.6.5.3"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0848"
FT                   /db_xref="GOA:Q7WCU6"
FT                   /db_xref="InterPro:IPR018086"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WCU6"
FT                   /protein_id="CAE35808.1"
FT                   /translation="MEWLNVLESHGQALLGPVAWMVVWSLVKIVVIAVPIILCVAYLTY
FT                   WERKMIGAMHVRLGPTRVGFKGLLQPFADVFKLLTKEVVVPSAANKVLFVVAPVVTLMP
FT                   ALAAWAVVPFGPEVVLANVNAGLLYIMAITSIGVYGVIVAGWASNSKYAFLGALRASAQ
FT                   MVSYELAIGFVLVSVLLVSGSLNMSEIVLGQGRGWFAERGLTFLSWNWLPLLPLFIIYV
FT                   ISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFFLGEYANMILLSCMAAIMFLGG
FT                   WMSPIDIAPLNWIPGWIWLGIKTFCVVSMFVWFRASFPRYRYDQIMRLGWKIFIPLTGV
FT                   WLVVLAIWMQTPWNIWR"
FT   misc_feature    complement(233292..234281)
FT                   /note="HMMPfam hit to PF00146, DE NADH dehydrogenase, score
FT                   8e-151"
FT   misc_feature    complement(join(233292..233360,233397..233465,
FT                   233508..233576,233670..233729,233772..233840,
FT                   233901..233969,234012..234071,234219..234287))
FT                   /note="8 probable transmembrane helices predicted for
FT                   BB3834 by TMHMM2.0 at aa 20-42, 92-111, 126-148, 169-191,
FT                   206-225, 257-279, 294-316 and 329-351"
FT   misc_feature    complement(233607..233648)
FT                   /note="PS00668 Respiratory-chain NADH dehydrogenase subunit
FT                   1 signature 2."
FT   CDS             complement(234344..236671)
FT                   /transl_table=11
FT                   /gene="nuoG"
FT                   /locus_tag="BB3835"
FT                   /product="NADH-ubiquinone oxidoreductase, 75 kDa subunit"
FT                   /EC_number="1.6.5.3"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0847"
FT                   /db_xref="GOA:Q7WCU5"
FT                   /db_xref="InterPro:IPR019574"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCU5"
FT                   /protein_id="CAE35809.1"
FT                   /translation="MVELTVDGNQVEVPEGSMVMHAAQKLGLYVPHFCYHKKLSIAANC
FT                   RMCLVEVEKAPKALPACATPVTNGMVVHTCSEKAKAAQKSVMEFLLINHPLDCPICDQG
FT                   GECQLQDLAVGYGGSSSRYKEEKRVVFHKDLGPLVSAEEMARCIHCTRCVRFGQEIAGV
FT                   MELGMLNRGEHAEITSFVGRSIESELSGNMIDLCPVGALTSKPFRYSARTWELARRRSV
FT                   SPHDSMGANLVVQVKGDRALRVVPFENEALNECWISDRDRFSYEGLNSDDRLAAPMIKG
FT                   ADGKWQEASWADALQAVAQGLSRVRESFGAGQIGALASEYATTEEFSLLGRLVRALGSE
FT                   NIDFRLRQTDAGFDAALSGAPWLGMPVAELDNLDRVLVIGSFLRKDHPLMAQRLRQAAK
FT                   RGTQVLLLDAAADDPLMPVAGRLTVAPSGLASALAEVAVALAQAKGQAVPAEFAAVAAG
FT                   EGAKQIAASLASGSNAAVLLGNMAVNAPQAATLAANAQAVAQLAGAKLGFLTAGGNTVG
FT                   GYLAGAVPGKGGKNAAAMLADPLKAYIVLHAEPSLDADNAPQALAALRGAQFAVALTPY
FT                   RSAAQDWADVMLPVAPFTETSGTFVNAQGQPQSFKGTVAPFGQTRPAWKVLRVLGNVLH
FT                   LAGFDEETSETVRDAALAGGVEARLSNAISAPLGLGQPLDALERVADVPIYRTDAIVRR
FT                   SEPLQAAPASRAPKARMNGRTLASLGVSAGDKVRVSGAAGAIELEAALDEAVADRAVRV
FT                   AAAFEQTAALGGAFGQISVERV"
FT   misc_feature    complement(234524..236026)
FT                   /note="HMMPfam hit to PF00384, DE Molybdopterin
FT                   oxidoreductase, score 3.4e-07"
FT   misc_feature    complement(235973..236017)
FT                   /note="PS00066 Hydroxymethylglutaryl-coenzyme A reductases
FT                   signature 1."
FT   misc_feature    complement(236204..236236)
FT                   /note="PS00643 Respiratory-chain NADH dehydrogenase 75 Kd
FT                   subunit signature 3."
FT   misc_feature    complement(236342..236380)
FT                   /note="PS00642 Respiratory-chain NADH dehydrogenase 75 Kd
FT                   subunit signature 2."
FT   misc_feature    complement(236468..236662)
FT                   /note="HMMPfam hit to PF00111, DE 2Fe-2S iron-sulfur
FT                   cluster binding domain, score 3.9e-10"
FT   CDS             complement(236687..238054)
FT                   /transl_table=11
FT                   /gene="nuoF"
FT                   /locus_tag="BB3836"
FT                   /product="respiratory-chain NADH dehydrogenase, 51 kDa
FT                   subunit"
FT                   /EC_number="1.6.5.3"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0846"
FT                   /db_xref="GOA:Q7WCU4"
FT                   /db_xref="InterPro:IPR019575"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCU4"
FT                   /protein_id="CAE35810.1"
FT                   /translation="MNAPDLYKRLAQGLDPNPLNDLSISMCLHGRHIAPQIMADVDGEN
FT                   WRLQEYVKRGGYEALRKILTTGMTPEDVIAEVKASGLRGRGGAGFPTGLKWSFMPRAFP
FT                   GQKYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGISVGYNYIHGEIFEVYE
FT                   RFEEALEEARAAGFLGDKLLGSDFSFQLHAFHGYGAYICGEETALLESLEGKKGQPRFK
FT                   PPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEVGKPNNGGTKLFSISGDVERP
FT                   GNYEIPMGTPFSKLLELAGGMRGGRKLKAVIPGGSSAPVLPADIMMDCTMDYDAIAKAG
FT                   SMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRIENGQGR
FT                   PEDLDMLDSVAGNIMGRTICALGDAAAMPVRSFIKHFRDEFAHHIEHKSCVVPQYL"
FT   misc_feature    complement(236909..236944)
FT                   /note="PS00645 Respiratory-chain NADH dehydrogenase 51 Kd
FT                   subunit signature 2."
FT   misc_feature    complement(237107..237892)
FT                   /note="HMMPfam hit to PF01512, DE Respiratory-chain NADH
FT                   dehydrogenase 51 Kd subunit, score 9.7e-142"
FT   CDS             complement(238051..238545)
FT                   /transl_table=11
FT                   /gene="nuoE"
FT                   /locus_tag="BB3837"
FT                   /product="respiratory-chain NADH dehydrogenase I, 24 kDa
FT                   subunit"
FT                   /EC_number="1.6.5.3"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0845"
FT                   /db_xref="GOA:Q7WCU3"
FT                   /db_xref="InterPro:IPR002023"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCU3"
FT                   /protein_id="CAE35811.1"
FT                   /translation="MLLSEQAYKKIDRELAKFPADQRQSAIMASLAIAQEEKGWLPAEI
FT                   LEDVANYIGVPPIAVQEVATFYNMFDVKPVGTHKIAVCTNLPCALRDGEKAADYLKRKL
FT                   GVDFRETTADGRFTLIEGECMGACGDSPVLIVNNKHMCVRMTEEKLDALVDGLKSQGES
FT                   A"
FT   misc_feature    complement(238072..238545)
FT                   /note="HMMPfam hit to PF01257, DE Respiratory-chain NADH
FT                   dehydrogenase 24 Kd subunit, score 5.4e-51"
FT   CDS             complement(238591..239847)
FT                   /transl_table=11
FT                   /gene="nuoD"
FT                   /locus_tag="BB3838"
FT                   /product="respiratory-chain NADH dehydrogenase, 49 kDa
FT                   subunit"
FT                   /EC_number="1.6.5.3"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0844"
FT                   /db_xref="GOA:Q7WCU2"
FT                   /db_xref="InterPro:IPR014029"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WCU2"
FT                   /protein_id="CAE35812.1"
FT                   /translation="MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHR
FT                   ATEKLAEHKTFIQALPYMDRLDYVSMMCNEHAYVMAIEKLLGIEAPLRAQYIRVMFDEI
FT                   TRVLNHLMSLGSHALDVGAMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDL
FT                   PDTMPQYGDSSKYRGEKEVRAMNDARSGSLLDFIEDFTNRFPGCVDEYETLLTDNRIWK
FT                   QRLVGIGVVDPDRAKALGFTGPMLRGSGVAWDLRKTQPYEVYDLMDFDVPVGVNGDCYD
FT                   RYLVRVAEMRESNRIIRQCVEWLRNNPGPVMIENHKIAPPSRTAMKSNMEELIHHFKLF
FT                   SEGFHVPPGEAYAAVEHPKGEFGIYLVADGANKPYRLKIRAPGFAHLQSLDEMARGHMI
FT                   ADAVTIIGTQDIVFGEIDR"
FT   misc_feature    complement(238597..239490)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF00346, DE Respiratory-chain NADH
FT                   dehydrogenase, 49 Kd subunit, score 5.7e-156"
FT   misc_feature    complement(239686..239721)
FT                   /note="PS00535 Respiratory chain NADH dehydrogenase 49 Kd
FT                   subunit signature."
FT   CDS             complement(239850..240497)
FT                   /transl_table=11
FT                   /gene="nuoC"
FT                   /locus_tag="BB3839"
FT                   /product="respiratory-chain NADH dehydrogenase, 30 kDa
FT                   subunit"
FT                   /EC_number="1.6.5.3"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0843"
FT                   /db_xref="GOA:Q7WCU1"
FT                   /db_xref="InterPro:IPR020396"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WCU1"
FT                   /protein_id="CAE35813.1"
FT                   /translation="MSRFTYAYMMMTRLETLKNNLQAAFGQDLALTESLGELTLEVAAE
FT                   QWFSACTKLRTDPALRFESCIDLCGVDYLTWGNGTQPEEKTGPVTRGRYAVVVHLLSIE
FT                   HNWRLRVRTWAPDDEFPMVSSLLECWPGVNWFEREAFDLYGIVFEGHPDLRRILTDYGF
FT                   IGHPFRKDFPLSGTVEMRYDPEQKRVIYQPVTIDPREITPRVVREDSYGMGR"
FT   misc_feature    complement(239958..240167)
FT                   /note="HMMPfam hit to PF00329, DE Respiratory-chain NADH
FT                   dehydrogenase, 30 Kd subunit, score 5.2e-38"
FT   CDS             complement(240548..241024)
FT                   /transl_table=11
FT                   /gene="nuoB"
FT                   /locus_tag="BB3840"
FT                   /product="NADH-ubiquinone oxidoreductase, 20 kDa subunit"
FT                   /EC_number="1.6.5.3"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0842"
FT                   /db_xref="GOA:Q7WCU0"
FT                   /db_xref="InterPro:IPR014406"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WCU0"
FT                   /protein_id="CAE35814.1"
FT                   /translation="MAIDGILKQGFITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHA
FT                   GAARYDLDQFGIIFRPSPRQSDLMIVAGTLCNKMGPALRKVYDQMPEPRWVVSMGSCAN
FT                   GGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGLLQMQNKIRLTNTIAR"
FT   misc_feature    complement(240584..240907)
FT                   /note="HMMPfam hit to PF01058, DE NADH ubiquinone
FT                   oxidoreductase, 20 Kd subunit, score 1.3e-60"
FT   misc_feature    complement(240623..240673)
FT                   /note="PS01150 Respiratory-chain NADH dehydrogenase 20 Kd
FT                   subunit signature."
FT   CDS             complement(241061..241420)
FT                   /transl_table=11
FT                   /gene="nuoA"
FT                   /locus_tag="BB3841"
FT                   /product="probable NADH-ubiquinone oxidoreductase chain 3"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0841"
FT                   /db_xref="GOA:Q7WCT9"
FT                   /db_xref="InterPro:IPR000440"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCT9"
FT                   /protein_id="CAE35815.1"
FT                   /translation="MNLHPYFPVLLFILVATLIGFALLTAGSLLGPRRPYAEKLSPYEC
FT                   GFEAFEDARMKFDVRYYLVAILFILFDLEIAFLFPWAIAQGTVGLVGFWTVMVFLAVLT
FT                   VGFIYEWKKGALDWE"
FT   misc_feature    complement(241067..241309)
FT                   /note="HMMPfam hit to PF00507, DE
FT                   NADH-ubiquinone/plastoquinone oxidoreductase, chain 3,
FT                   score 6.8e-47"
FT   misc_feature    complement(join(241094..241162,241172..241240,
FT                   241325..241393))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BB3841 by TMHMM2.0 at aa 10-32, 61-83 and 87-109"
FT   misc_feature    complement(241346..241420)
FT                   /note="Signal peptide predicted for BB3841 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.970) with cleavage site
FT                   probability 0.396 between residues 25 and 26"
FT   CDS             complement(241609..242775)
FT                   /transl_table=11
FT                   /locus_tag="BB3842"
FT                   /product="outer membrane porin protein precursor"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0840"
FT                   /db_xref="GOA:Q7WCT8"
FT                   /db_xref="HSSP:1E54"
FT                   /db_xref="InterPro:IPR002299"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCT8"
FT                   /protein_id="CAE35816.1"
FT                   /translation="MKKTLLAAALLAGFAGAAQAETSVTLYGIIDTGIGYNDVDFKVKG
FT                   ANADGSDFKYNHSRFGMINGVQNGSRWGLRGTEDLGDGLQAVFQLESGFNSGNGNSAQD
FT                   GRLFGRQATIGLQSESWGRLDFGRQTNIASKYFGSIDPFGAGFGQANIGMGMSAMNTVR
FT                   YDNMVMYQTPSYSGFQFGIGYSFSANDKDADAVNRVGFATADNVRAITTGLRYVNGPLN
FT                   VALSYDQLNASNNQAQGEVDATPRSYGLGGSYDFEVVKLALAYARTTDGWFGGQGYPVA
FT                   VTLPSGDKFGGFGVNTFADGFKANSYMVGLSAPIGGASNVFGSWQMVDPSNDKLTGGDE
FT                   KMNVFSLGYTYDLSKRTNLYAYGSYAKNFAFLEDAKSTAVGVGIRHRF"
FT   misc_feature    complement(241615..242670)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF00267, DE Gram-negative porin,
FT                   score 4.5e-05"
FT   misc_feature    complement(242230..242277)
FT                   /note="PS00225 Crystallins beta and gamma 'Greek key' motif
FT                   signature."
FT   misc_feature    complement(242716..242775)
FT                   /note="Signal peptide predicted for BB3842 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.997 between residues 20 and 21"
FT   CDS             243230..243841
FT                   /transl_table=11
FT                   /locus_tag="BB3843"
FT                   /product="probable TetR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0838"
FT                   /db_xref="GOA:Q7WCT7"
FT                   /db_xref="InterPro:IPR012287"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCT7"
FT                   /protein_id="CAE35817.1"
FT                   /translation="MTLPRPPGRADQLASLRRQLILEAAERVFARDGLENTTIRAIAKE
FT                   ADCTTGAIYPWFDGKEAIYGAVLEASLQRLRQSLADALRDAVDAQAARSVIVAFFNYYT
FT                   TRQTEFSLGLYLFRGLGPRGLGREMDDRLNARLRTCVELLGTGLARTRRWPAERIALEE
FT                   MNTFTYLMGLLLLFHTRRLKSLGQQAESLLDSFITALEQR"
FT   misc_feature    243290..243430
FT                   /note="HMMPfam hit to PF00440, DE Bacterial regulatory
FT                   proteins, tetR family, score 1e-13"
FT   CDS             243843..244277
FT                   /transl_table=11
FT                   /locus_tag="BB3844"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0837"
FT                   /db_xref="InterPro:IPR006683"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCT6"
FT                   /protein_id="CAE35818.1"
FT                   /translation="MNIPAAEPHARMTLAEFHRLLADQHPFAQVLGIDVVDIGHGTARA
FT                   VLPARDTHQRLGGIVAGPMLMGLADLTMYAAVVGATGQAGAVTANLTIHFLRKTSGAAV
FT                   IADARVLKTGRLAMAEAILRCDGADEPVAHVVSAWAVPAP"
FT   CDS             244274..244708
FT                   /transl_table=11
FT                   /locus_tag="BB3845"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0836"
FT                   /db_xref="GOA:Q7WCT5"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCT5"
FT                   /protein_id="CAE35819.1"
FT                   /translation="MTREITIIGLGATGSQAAHALLHAAPDVSLTLYDRQPLRCEPFRG
FT                   QATLAASAAEALRESAVIVLALTDEREIDRTLERFSDGKVGVDLQGKRVLDLCPSPPDW
FT                   VRALGAAVSEAGADYRHADPREVAGERAGPQALLRLMLAR"
FT   misc_feature    244274..244333
FT                   /note="Signal peptide predicted for BB3845 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.916) with cleavage site
FT                   probability 0.715 between residues 20 and 21"
FT   CDS             complement(244692..245495)
FT                   /transl_table=11
FT                   /locus_tag="BB3846"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0835"
FT                   /db_xref="GOA:Q7WCT4"
FT                   /db_xref="InterPro:IPR016118"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCT4"
FT                   /protein_id="CAE35820.1"
FT                   /translation="MPLFVNLLADVSSIDPMESYAVWIAAHPIIIFVAAPVLAAAGALL
FT                   LWQLVAGLPAGRRRTMVFAVLALVAVGVFGALAASVEHQGGMVAFDQALARALGLSMPA
FT                   ALLWVLSWFTHLGDRTLLTLVAVGMTLTLLWRRRWVLAGACVAATGGAGALNWLLKRAF
FT                   QRVRPDHLHGYTLADGWSFPSGHASASMAVYGIACYLMLRTLPARWRSSALAGVAALIV
FT                   AIGVSRVLLQVHFLSDVVAGFAITAAWLALCVAVTEWALRVNARA"
FT   misc_feature    complement(244710..245144)
FT                   /note="HMMPfam hit to PF01569, DE PAP2 superfamily, score
FT                   4.2e-18"
FT   misc_feature    complement(join(244713..244781,244791..244859,
FT                   244893..244961,245019..245087,245148..245216,
FT                   245259..245318,245355..245423))
FT                   /note="7 probable transmembrane helices predicted for
FT                   BB3846 by TMHMM2.0 at aa 25-47, 60-79, 94-116, 137-159,
FT                   179-201, 213-235 and 239-261"
FT   CDS             complement(245512..246327)
FT                   /transl_table=11
FT                   /locus_tag="BB3847"
FT                   /product="probable DNA repair exonuclease"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0834"
FT                   /db_xref="GOA:Q7WCT3"
FT                   /db_xref="InterPro:IPR004843"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCT3"
FT                   /protein_id="CAE35821.1"
FT                   /translation="MMRVLHISDTHFGTEREPVVHALHALADTLRPDLVVLGGDITQRA
FT                   RRGQFAAARRFIQALQRPVLAVPGNHDIPLFNLAARLFDPYGNYRRALGAVLEPVYEDD
FT                   RLLAIGVNSTRAARRKNGEVSRAQAQRVAQRLRDARPGQLRVVALHHPVHAMVESDQRN
FT                   LLIGREFAVPAWVDAGVDLILGGHIHLPYVAPLHGKAGAAGRRAWTVQAGTAVSRRVRG
FT                   RVPNSVNLIDYAAQADSPACTVQRWDFQTDSGAFVLFGQQVLALNRARG"
FT   misc_feature    complement(245755..246324)
FT                   /note="HMMPfam hit to PF00149, DE Calcineurin-like
FT                   phosphoesterase, score 1.4e-22"
FT   CDS             complement(246324..247283)
FT                   /transl_table=11
FT                   /locus_tag="BB3848"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0833"
FT                   /db_xref="GOA:Q7WCT2"
FT                   /db_xref="InterPro:IPR001206"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCT2"
FT                   /protein_id="CAE35822.1"
FT                   /translation="MTQPLRGGLSGREPLFIVLNTGSGRDDAPAAQAAIVHVLQAASRA
FT                   HTLMPVSDATALPGVARQAVERACAEGGIVVAAGGDGTLNAVARAVLGSGVPFGILPQG
FT                   TFNFFGRAHGIPQDAHAATRCLLDARIEPVQVGLLNDRLFLVNASLGLYPQLLEDREAY
FT                   KQRYGRSRMVALWSGLVTLLRAPPQLTLQLEHGGQARTLRTPTLVVGNNALQLERLGIA
FT                   EAAALQQGQLVAMSVRPVGTLALYGLLLSGLFSRLGEADKVVSFGFDRLTVRVRGRRRV
FT                   KVAMDGEISWLPTPLQFQVSPEPLRLLVPSPGQRLEAA"
FT   misc_feature    complement(246861..247244)
FT                   /note="HMMPfam hit to PF00781, DE Diacylglycerol kinase
FT                   catalytic domain (presumed), score 0.00021"
FT   CDS             complement(247328..248224)
FT                   /transl_table=11
FT                   /locus_tag="BB3849"
FT                   /product="LysR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0832"
FT                   /db_xref="GOA:Q7WCT1"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCT1"
FT                   /protein_id="CAE35823.1"
FT                   /translation="MTLKQLEAFYWAATCASFAVAADRLHLSLSSLSKRIAELESALGL
FT                   DLFDRSGHRAVLTAAGERLLPQARDLLASADRIRASLRAEPELGVRCRFGVGELSALTW
FT                   LPRLIGRVRGRYPGLALEPYVDVGQVLKRKVAEGELDFAVVAGASSHSAIASAPVGQAH
FT                   FAWVAAPSVAGAAQSLTPQLLAGTALVSLPDGAGTTRLLDPWLAGGAPAGPRLACNNWG
FT                   AIAGMLLEGMGIGLLPRHWAQALARDGALRILASDPEPVPLHYAFHWRRDDTRPLVAAM
FT                   RDQVLLSVDFAAPCRLP"
FT   misc_feature    complement(247334..247342)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="PS00294 Prenyl group binding site (CAAX box)."
FT   misc_feature    complement(247355..247975)
FT                   /note="HMMPfam hit to PF03466, DE LysR substrate binding
FT                   domain, score 2.3e-30"
FT   misc_feature    complement(248039..248218)
FT                   /note="HMMPfam hit to PF00126, DE Bacterial regulatory
FT                   helix-turn-helix protein, lysR family, score 2.6e-17"
FT   misc_feature    complement(248084..248176)
FT                   /note="PS00044 Bacterial regulatory proteins, lysR family
FT                   signature."
FT   misc_feature    complement(248162..248224)
FT                   /note="Signal peptide predicted for BB3849 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.941) with cleavage site
FT                   probability 0.836 between residues 21 and 22"
FT   CDS             complement(248252..250210)
FT                   /transl_table=11
FT                   /gene="betT"
FT                   /locus_tag="BB3850"
FT                   /product="high-affinity choline transport protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0831"
FT                   /db_xref="GOA:Q7WCT0"
FT                   /db_xref="InterPro:IPR018093"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCT0"
FT                   /protein_id="CAE35824.1"
FT                   /translation="MQNELKPTINKPVFLTSALFILLLVVFTIAAPATAQDFFNVIQAW
FT                   ILGNASWFYILTVAIILLAVIFVAVSRYGNIKLGPDHSEPDYRDITWFAMLFSTGMGIG
FT                   LMFFGVAEPVMHFIDPPVGEGGTALAAREAMKITFFHWGLHAWAIYASVALVLAFFCFR
FT                   HGLPLTLRSALYPLIGERIYGPIGHAVDIFAIIGTVFGVATSLGLGVAQINSGLNHLFG
FT                   VPVGIPTQIILIVISCGLATISVASGLDRGIRILSETNLLLAVVLLLFVLVLGPTVFLL
FT                   QTFVQNTGAYLSDIVNKTFNLYAYEPTDWIGGWTLFYWGWWIAWSPFVGLFIARISRGR
FT                   TIRQFVGGVLLVPAGFTLFWMTVFGDAAIHAILVEGMGSLAETVKADSSLALFAFLEHL
FT                   PWGSVTSVVAIVMVVVFFVTSADSGALVVDQLASGGAESTPVWQRIFWSTLMGVVAIAL
FT                   LLADGLQALQTATIASALPFSIILLLALWGLFKALRLDATKRSLLHRTITRTQPVRGQN
FT                   WEHRLRNIVMMPRRAHVLRFISDVVRPAMDDVAEALRKEAYEAQVVDGEEGEVRLEVSH
FT                   GVYLDFSYAVYPRSEVRPSLTPQEANDEEERRYFRAEVHLREGGQDYDIMGWTRDEVIG
FT                   DILDQYERHRHYLHVVH"
FT   misc_feature    complement(248723..250174)
FT                   /note="HMMPfam hit to PF02028, DE BCCT family transporter,
FT                   score 6.3e-218"
FT   misc_feature    complement(join(248741..248800,248810..248878,
FT                   248948..249016,249119..249178,249215..249283,
FT                   249362..249430,249467..249535,249578..249646,
FT                   249707..249775,249875..249943,250004..250063,
FT                   250106..250174))
FT                   /note="12 probable transmembrane helices predicted for
FT                   BB3850 by TMHMM2.0 at aa 13-35, 50-69, 90-112, 146-168,
FT                   189-211, 226-248, 261-283, 310-332, 345-364, 399-421,
FT                   445-467 and 471-490"
FT   misc_feature    complement(249245..249274)
FT                   /note="PS01303 BCCT family of transporters signature."
FT   misc_feature    complement(250106..250210)
FT                   /note="Signal peptide predicted for BB3850 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.985 between residues 35 and 36"
FT   CDS             250415..251083
FT                   /transl_table=11
FT                   /locus_tag="BB3851"
FT                   /product="putative transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0829"
FT                   /db_xref="InterPro:IPR002577"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCS9"
FT                   /protein_id="CAE35825.1"
FT                   /translation="MAGKRSYEDGCAGAHALDLVGERWALLVVRELLLGPKRFTDLRKG
FT                   LPGISPNVLTQRLTELEAVAVLRRRKLDPPAGAWVYELTDWGRELEPVILQLGKWGARS
FT                   PALPREAGLSVDSLVLSFRAMFDPRAAARLTATYELVLDGQHFWARVENGQIALLRGRP
FT                   PARPDATIEASPNALAALVYDDGDLDAAVAAEQLRYSGPRAGIARFLGLFTLPEPAAQD
FT                   "
FT   misc_feature    250469..250738
FT                   /note="HMMPfam hit to PF01638, DE Transcriptional
FT                   regulator, score 9.6e-19"
FT   CDS             251207..252313
FT                   /transl_table=11
FT                   /locus_tag="BB3852"
FT                   /product="probable HlyD-family secretion protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0828"
FT                   /db_xref="GOA:Q7WCS8"
FT                   /db_xref="InterPro:IPR006143"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCS8"
FT                   /protein_id="CAE35826.1"
FT                   /translation="MKSKKGTLAAGIVAAVAIAGGAWLYLRDAGSAPAWTMAPVKVAAA
FT                   PAALGPLPVTLAGIGTLQASRQVVIPAEVDGRIARIAFESGQAVRAGQVLAQLNDAPEQ
FT                   GDLARLQAQLRNARSVLERTRRLVPQQAATAEQLDQARAAYDQAAGEVRRVQALVEQKQ
FT                   VKAPFDGVLGVRRVDLGQFVRAGEPVVSLTDARTMYADITLPEQALRDIRTGQAVSVGV
FT                   DAYPGRAFDGVVSTIEPQVSAQARTLLVRATLPNPDGVLAPGMYVNARVALPERPGVIT
FT                   VPETAVSYSAYGDSVYVVDDTVRPATVRQVFVKTAERVDSRIVVTEGLQAGQRVVTSGQ
FT                   LRLHNGAAVEVFGQDTLAAGGGTALASH"
FT   misc_feature    251207..251263
FT                   /note="Signal peptide predicted for BB3852 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.999) with cleavage site
FT                   probability 0.438 between residues 19 and 20"
FT   misc_feature    251225..251284
FT                   /note="1 probable transmembrane helix predicted for BB3852
FT                   by TMHMM2.0 at aa 7-26"
FT   misc_feature    251402..252217
FT                   /note="HMMPfam hit to PF00529, DE HlyD family secretion
FT                   protein, score 1.6e-12"
FT   CDS             252326..255439
FT                   /transl_table=11
FT                   /locus_tag="BB3853"
FT                   /product="integral membrane component of multidrug efflux
FT                   system"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0827"
FT                   /db_xref="GOA:Q7WCS7"
FT                   /db_xref="HSSP:1IWG"
FT                   /db_xref="InterPro:IPR001036"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCS7"
FT                   /protein_id="CAE35827.1"
FT                   /translation="MTFTDLFVRRPVLALVVSTLILLLGLRATGELPVRQYPLTENTTI
FT                   TITTQYPGASPELMQGFVTQPIAQAVATVENIDYLSSSSTQGRSLITVRMKLNADSNKA
FT                   LTEIMAKVNQVKYRLPQEIYDPVLAKSSGEATSVAYVGFSSKTMPIPALTDYLQRVVLP
FT                   QLSSIDGVASVDLYGGQTLAMRVWLDPARMAARGISAGEIAQALRDNNVQAAPGQTKGL
FT                   YVVSNIQVNTDLNNLTDFRDMVVRQVDGAIVRLGDVGTVELGAASYDSSARMDGEKAVY
FT                   FGLNATPVGNPLTIVERINALLPGIKQNLPPGVEVQVPFELARFINASIDEVRNTLLEA
FT                   VLIVVAVIFLCLGSLRAVLVPVVTIPLSMLGAAAIMLSLGFSINLLTLLAMVLAIGLVV
FT                   DDAIVVVENVHRHIEEGKSPVHAALVGAREVAGPVIAMTLTLAAVYAPIGLMGGLTGSL
FT                   FKEFAFTLAAAVGVSGVIALTLSPVMSSFLLNSRVSEGWMARKAEHFFQRLGDAYGRVL
FT                   DVSLRHRWVTGLIAVVVLASLPVLYGSAQRELAPVEDQAMILTAVKSPQHANIDYVEKF
FT                   GQKWDTVMQEIPEQNGRWLINGSDGVANSIGGVNLVTWQARKRSADEIQGDLQNRVNAI
FT                   EGSNTFAFQLPSLPGSTGGLPVQMVLMSAADYRVVYDAMETLKHAARASGLFMVVDSDL
FT                   DYNNPVVRVDIDRAKANSLGVTMKAIGDTLAVLVGENYVNRFGMDGRSYDVIPQSPRGM
FT                   RLTPQSLGQFYVKSASGAQVPLATLVKISMGVEPNRLTQFDQLNSATFQAIPMPGVTMG
FT                   DAVQFLTEQARLLPPGFSHDWQSDARQYSQEGSALVVTFLFAIIVIYLVLAAQYESLRD
FT                   PLIILVSVPMSICGALIPLALGMATINIYTQIGLVTLIGLISKHGILMVEFANEMQAHA
FT                   GLDRRAAMERAARIRLRPILMTTAAMVVGLVPLLFASGAGAHSRFSLGLVIVVGMLVGT
FT                   LFTLFVLPTMYTLLARDHRAAGQSARARELARLDAQAGAASPAHETAS"
FT   misc_feature    252326..252415
FT                   /note="Signal peptide predicted for BB3853 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.857) with cleavage site
FT                   probability 0.695 between residues 30 and 31"
FT   misc_feature    252332..255337
FT                   /note="HMMPfam hit to PF00873, DE AcrB/AcrD/AcrF family,
FT                   score 0"
FT   misc_feature    join(252344..252412,253337..253405,253442..253510,
FT                   253622..253690,253709..253777,253892..253960,
FT                   254855..254914,254942..255010,255155..255223,
FT                   255266..255334)
FT                   /note="10 probable transmembrane helices predicted for
FT                   BB3853 by TMHMM2.0 at aa 7-29, 338-360, 373-395, 433-455,
FT                   462-484, 523-545, 844-863, 873-895, 944-966 and 981-1003"
FT   CDS             255436..256899
FT                   /transl_table=11
FT                   /locus_tag="BB3854"
FT                   /product="outer membrane component of multidrug efflux
FT                   system"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0826"
FT                   /db_xref="GOA:Q7WCS6"
FT                   /db_xref="InterPro:IPR010131"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCS6"
FT                   /protein_id="CAE35828.1"
FT                   /translation="MTHPVPTTFARTAGALLAALALAGCAVGPQYQAPTPAPVKLASPE
FT                   QALFSADRLQREWWRQLQDARLDALIGLALARNLDIRQAQARLREARAALDEKELDRWP
FT                   TVTAAGGYTRSLSQINPGPDQRNLAQSYRAGFDATWEIDLFGRLQRRAEAAAARDQAAA
FT                   ADLAQTRLVVVAELARNYFEMRGAEQRLAVARANLATQQETLRVTAALVETGRGYAGDL
FT                   ASARAELAGTRALLAPLETQRRLAQYRIAVLAAMRPAELGELRQEQPLAPLAAQLPIGD
FT                   VAMLLQRRPDVRAAERLLAATNADVGAITAELYPRIDLGGFLGFIALRGGDLGQASSKA
FT                   FALAPTISWPALHLGSVQAQLRAGQARHDAARARYEQVALQAIEEVEGALTRYGQNQQR
FT                   LRDLLDSATQSQRAADLAQTRYREGAAPYLTVLDAQRTLLRAQDAVAQSESESYTSLVA
FT                   LYKALGGGWNTDAAAPARSARTAALPASP"
FT   misc_feature    255436..255531
FT                   /note="Signal peptide predicted for BB3854 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.997) with cleavage site
FT                   probability 0.755 between residues 32 and 33"
FT   misc_feature    255478..255510
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    255634..256233
FT                   /note="HMMPfam hit to PF02321, DE Outer membrane efflux
FT                   protein, score 7.4e-30"
FT   misc_feature    256267..256860
FT                   /note="HMMPfam hit to PF02321, DE Outer membrane efflux
FT                   protein, score 2.6e-33"
FT   CDS             256914..257585
FT                   /transl_table=11
FT                   /locus_tag="BB3855"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0825"
FT                   /db_xref="InterPro:IPR005149"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCS5"
FT                   /protein_id="CAE35829.1"
FT                   /translation="MSDQSASVSTHWVPHQPAERILMTLKTRGPQGIAAIAEVLDVTAE
FT                   AVRQQMARLQVEGLVDAETRSAGRGRPTQIWRLTQAGHARFPDMHAEMTVQMLGAVRQV
FT                   FGESGIDKLIGAREASMRASYAEAMQGADGLRERLERLVAVRSREGYMAELVATDDGYL
FT                   LVENHCPICAAAQACMAFCRSELDLFREIIGPQARVERAEHILAGARRCAYTVRPLRQA
FT                   A"
FT   CDS             complement(257629..258123)
FT                   /transl_table=11
FT                   /locus_tag="BB3856"
FT                   /product="azurin"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0824"
FT                   /db_xref="GOA:P0A321"
FT                   /db_xref="HSSP:1RKR"
FT                   /db_xref="InterPro:IPR008972"
FT                   /db_xref="UniProtKB/Swiss-Prot:P0A321"
FT                   /protein_id="CAE35830.1"
FT                   /translation="MRGRASHNVLMEDVMFKQVLGGMALMAAFSAPVLAAECSVDIAGT
FT                   DQMQFDKKAIEVSKSCKQFTVNLKHTGKLPRNVMGHNWVLTKTADMQAVEKDGIAAGLD
FT                   NQYLKAGDTRVLAHTKVLGGGESDSVTFDVAKLAAGDDYTFFCSFPGHGALMKGTLKLV
FT                   D"
FT   misc_feature    complement(257635..258018)
FT                   /note="HMMPfam hit to PF00127, DE Copper binding proteins,
FT                   plastocyanin/azurin family, score 1.9e-73"
FT   misc_feature    complement(257656..257706)
FT                   /note="PS00196 Type-1 copper (blue) proteins signature."
FT   misc_feature    complement(258019..258123)
FT                   /note="Signal peptide predicted for BB3856 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.998) with cleavage site
FT                   probability 0.996 between residues 35 and 36"
FT   CDS             complement(258264..258911)
FT                   /transl_table=11
FT                   /locus_tag="BB3857"
FT                   /product="putative transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0823"
FT                   /db_xref="GOA:Q7WCS4"
FT                   /db_xref="InterPro:IPR014757"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCS4"
FT                   /protein_id="CAE35831.1"
FT                   /translation="MNDNRSVQRCLALLRSFRSGPGQSLTALSKAVDLPHSTVLRFLTT
FT                   LESEGYVRKEGTLWSLTPQLLEIGFAALANTGVNDVIQSALQELADQCAGTANIGERSK
FT                   NDVIIIARASSEAERRKILVVNLRVGNALPPASALCSALDLPEDQWAIARYPERKVTTV
FT                   GVALFSSQARGLSLGLSVNDDDYDMPRIEAEVLPRLRAQRDHIRRLMRLGEM"
FT   CDS             259015..261063
FT                   /transl_table=11
FT                   /gene="hyuA"
FT                   /locus_tag="BB3858"
FT                   /product="hydantoin utilization protein A"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0822"
FT                   /db_xref="GOA:Q7WCS3"
FT                   /db_xref="InterPro:IPR008040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCS3"
FT                   /protein_id="CAE35832.1"
FT                   /translation="MGYRVGVDIGGSFTDFAVFDEDSGEIKSLKVFSRPDQPGEEVIAG
FT                   VRMLGERYGIQPEQITYFTHGTTVGINTVIQRKGLKLALFTTENFSDVLELARLKTPDM
FT                   YHLLSRRPAPLVKRSMVFGIAERMGPDGTVRAPLDEASVERAVRQALDAGAEGIVVSLL
FT                   HAYRNPAHELRVREIAEALAPGLPVSCSSETWPIIREYERTITAVIGGYVQPRVAHYLT
FT                   SLQQALKNAGVQPEPRLTKSNGGVMTAEQGKRDCVQMILSGTAAGVIGASHVAATAGLP
FT                   RCLSLDIGGTSADIAVIVDGKPQYGVGELIGDFQIYIPSVSVSSVGEGGGSIAWVDPLG
FT                   VLKVGPESAGSHPGPACYRRGGTRATITDAFVCCGLVGHSELGYQAVTVDADASRQAVG
FT                   ELADRLGRGIEETAEAIIQIAVSGMYSEVSGLVSRYGIDPREYAVLAFGGAGPMLGCFL
FT                   ARELKVREIVVPPSPGTLSALGGLIADLKSDFLKTVYTDLSADRLAFVRDEFATLAGRA
FT                   RQWLAQEQGHAEEAELVYSAEMRYRGQSYEIDTVLDPIHIEAGDVQAVGQAFHDMHRRL
FT                   YGHADEQAPVQIVSLRVVIAGNNDKPAFPRHALRPGAPRAERKVRVWLDGAWHEVPLYA
FT                   RTALAAGQQFTGPAIVTQDDCTTVIPPDYACRVDEYANLRITEGAAS"
FT   misc_feature    259024..260670
FT                   /note="HMMPfam hit to PF01968, DE
FT                   Hydantoinase/oxoprolinase, score 4.4e-139"
FT   CDS             261060..263072
FT                   /transl_table=11
FT                   /gene="hyuB"
FT                   /locus_tag="BB3859"
FT                   /product="hydantoin utilization protein B"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0821"
FT                   /db_xref="GOA:Q7WCS2"
FT                   /db_xref="InterPro:IPR003692"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCS2"
FT                   /protein_id="CAE35833.1"
FT                   /translation="MTVDNFRLQVLANHCTAAAEAMGYTLMRTAYSTFVKETEDFSAQL
FT                   MTPAGKTFASPKTFGATWYTGLDYGRVIAMFDDYREGDIYLTNDPYSGFVATHTPDMHV
FT                   WKPVFRDGRLVCFVGSHIHNTDMGGAVPASLSRTLTEVHQEGLRIPPMLLARDGVIDEK
FT                   VLRIMEVNVRMPEQNRGDLNAQIAALNVGERKVHEIIDRFGVDEFMQGAEAILDYAEQQ
FT                   TRALIREIPDGEYRFAEYADEDTVGGYPCRIQITLRVRGDELELDFTGSDPQVASSLNV
FT                   PTGGDGHHSVITVGLIYVMHTLAPRNVLNAGSVRPCHAVLPEGTVVNPQAPAAVGMRSL
FT                   MAAVIQACTFGVFSRAMPDRLPACPAGGSTLLNVKTATREGRQVLSSIGPCGGGAGGGP
FT                   EHDGVEGCGANNAFLKNTPVEINEAEVPIEIIRYGLVPDTGGAGRQRGGNAATMEFRLL
FT                   APNGVVTARNRNRSELAAWGVMGGKAGANSRFIRNPDSDAPEELRNSDLVNCAPGDVIR
FT                   LQGPAGGGYGHPYERPIEQVVEDVRCGFVSRQRAREAYGVAVRADLSVDEAATRELRRA
FT                   DRGGQAHFDHGPGRSRFEAVWTPARYDAMTRIMAALPISWRHFVKHQMFAALAGSAPPQ
FT                   DGGAQDIERLYAQLSQRYADLPSPQAIAAASGAAA"
FT   misc_feature    261066..262679
FT                   /note="HMMPfam hit to PF02538, DE Hydantoinase
FT                   B/oxoprolinase, score 2.4e-49"
FT   misc_feature    261558..261581
FT                   /note="PS00867 Carbamoyl-phosphate synthase subdomain
FT                   signature 2."
FT   CDS             263098..264432
FT                   /transl_table=11
FT                   /locus_tag="BB3860"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0820"
FT                   /db_xref="GOA:Q7WCS1"
FT                   /db_xref="InterPro:IPR003042"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCS1"
FT                   /protein_id="CAE35834.1"
FT                   /translation="MAASRDIFAPDFRRRPYWWEGYEPPECGEDTLPASADVAIVGGGY
FT                   TGVCCALALREAGIEAVVLEAGRPGEGASTRSGGQVSGGVNVQKKALAAVGESAGQRAE
FT                   RLAARLRDAAASMAYVESLIERYAIECGWHRTGRLTTMWVPAHYQSWQARLDQLNACTG
FT                   SQARMIPREELAAEIGSSVYHGAALIEHAGHLQPAQLYGGMLRAARDAGARVLGRTPVE
FT                   RIERRAGGYDVHTARGTVRAGQVVIATNGYTGANLGGLKRRIVPVCTHMITTEALPPDL
FT                   AASLLPTNRAVSESRRVVNHYRLSPDGRRLLFGGRARFVPTDEATTARLLYRAMLKRFP
FT                   QLAGTRITHSWGGNVAMTLDSMPHIGGADGLHYALGCNGSGVAMMSYLGHCVGRKIATQ
FT                   SGEPINAFDMGEIPGHPFYFGNPWFLFAIGSWYQARDAYDHWRAR"
FT   CDS             264541..265533
FT                   /transl_table=11
FT                   /locus_tag="BB3861"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0819"
FT                   /db_xref="GOA:Q7WCS0"
FT                   /db_xref="InterPro:IPR017909"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCS0"
FT                   /protein_id="CAE35835.1"
FT                   /translation="MNNQRRNALRVLTGLCGAAALPRLALAQAGAYPAGPVTVVVPYGS
FT                   GGSTDVIARLLVNDVSERLGGKFIVENKPGAAGNIGTRQVGISRPDGTTLLYSTATPFC
FT                   INPYVYRTLPFDPDKDFAAVSRTAKLPLVLVVNAGLGIKTPQAFIDYLRKNQQQCSYSS
FT                   YGIGTSSHIASAIFTKKIGAPGVLHVPYKDMTAMSDLAAGRNTFHIDAWSVVDPLVRAG
FT                   KLTALAVSSAEPLPWAPKLPTIASVIGSDYEVVTWHAVFAPRKTPAEIVQKLNHEFRQT
FT                   IAKPSVQKTYVDQGFLTYPPATPAEIDAFVQQDKQRWKSFVEAAGITPS"
FT   misc_feature    264541..264621
FT                   /note="Signal peptide predicted for BB3861 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.879 between residues 27 and 28"
FT   misc_feature    264694..265521
FT                   /note="HMMPfam hit to PF03401, DE Uncharacterized protein
FT                   family, UPF0065, score 1.4e-74"
FT   CDS             complement(265600..267684)
FT                   /transl_table=11
FT                   /locus_tag="BB3862"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0818"
FT                   /note="Similar to Pseudomonas aeruginosa probable
FT                   thiosulfate sulfurtransferase pa2603 SWALL:Q9I0N4
FT                   (EMBL:AE004689) (527 aa) fasta scores: E(): 3.2e-45, 40.31%
FT                   id in 516 aa, and to Agrobacterium tumefaciens hypothetical
FT                   protein atu6089 or agr_pti_bx104 SWALL:Q8U646
FT                   (EMBL:AE009427) (395 aa) fasta scores: E(): 1.4e-30, 41.66%
FT                   id in 312 aa"
FT                   /db_xref="InterPro:IPR001763"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCR9"
FT                   /protein_id="CAE35836.1"
FT                   /translation="MTTMQQRYDAVKDAMAQIGRLAAQLDGEALREAIGPVLVALGERD
FT                   ELFPRDEFPIRAGKPGGLYQLWRGESGDLALYASAGKTGKKQPPHDHTTWAVIAGVYGE
FT                   EHNVFFERTDDGSRAGFGTLRQIDALTVVQGNAARLSGEVFHTIEVVSEEDSLHLHLYG
FT                   RALDTLSGRINFATEEGGAYTRFMAVPETYAPWIAPRDLYEMLTDGGELAILDVRENGV
FT                   YTQGHLFHAASMPLSVFELRVDDGLPSPHVRIVVIDDADGLAEQAVRLLHQRGYHNVAV
FT                   LQGGQPGWNAAGLPVYTGVFVPSKAFGEVAEHVYGTPSISAVELDALRRSEEVLVLDSR
FT                   TEQEFNLMSVPGAYSCPGAELVARALDHAGPIVVNCAGRTRSIIGAQSLRNAGKTDVRA
FT                   LENGTMGQHLAGLPLERGKSASYLDRPVAAGAAQAAQAWALGMSIATLDASELHDMLSN
FT                   PYRTTYLFDARDPSCSSRATLPRAVAAPGGQLVQQTDYYAPVRNARIVVFDTDGVQAPM
FT                   TAGWLHQMGWEVYLHRPEATALVAPPRVEYDDERGVPVEAVAADAVIIDVGDSRTYRAG
FT                   HLAGAAWAPRSRLPALLAQRKPAGPLLFTCADGRVSRLAAADAAAQGYQAAYLKGGTAA
FT                   LGADRLRGDAPQFLTEAIDVWYRPYDRETGIEEAMHQYLSWETGLLDKVRSDPTVAFRI
FT                   "
FT   misc_feature    complement(266809..267093)
FT                   /note="HMMPfam hit to PF00581, DE Rhodanese-like domain,
FT                   score 1.3e-07"
FT   CDS             complement(267709..268719)
FT                   /transl_table=11
FT                   /locus_tag="BB3863"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0817"
FT                   /db_xref="GOA:Q7WCR8"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCR8"
FT                   /protein_id="CAE35837.1"
FT                   /translation="MAFFNEEQRGNTMQHTLAKYLAAAAVAVLPWTAGAQDKAAKPWQP
FT                   DGPVTLILGYGAGGGHYALAQVLQARMAEELGQPLIVMPKPGAGGLIATDFVANARPDG
FT                   RTITWSGPGVLTIWPQLRQISYDPKKLTPVNLLVQMGYMLVTKPGESRWNSVQDVIDGS
FT                   KSGDVTYSSVGVGTSNSMTGHLLNAMTGSRLREIGYKGGGPALMSTMAGETDIGFGDTA
FT                   THELIAAGRLRAIATTTRQREPRFPDVPTVAETVPGYEVTNWLGVIAPPGTPQPIVDRY
FT                   QQIFAKLMAEPEIAKRVKELGMTPDVGTPQAFSELIDSETQLWKRLIRDQNIKVE"
FT   misc_feature    complement(267721..268530)
FT                   /note="HMMPfam hit to PF03401, DE Uncharacterized protein
FT                   family, UPF0065, score 5e-71"
FT   misc_feature    complement(268615..268719)
FT                   /note="Signal peptide predicted for BB3863 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.713) with cleavage site
FT                   probability 0.708 between residues 35 and 36"
FT   CDS             complement(268813..269814)
FT                   /transl_table=11
FT                   /locus_tag="BB3864"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0816"
FT                   /db_xref="GOA:Q7WCR7"
FT                   /db_xref="InterPro:IPR007036"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCR7"
FT                   /protein_id="CAE35838.1"
FT                   /translation="MQPGAVAHDYLPVGTMSSGMAIAIPVTVIKGAAPGPCLWVNGQVH
FT                   GNELNGVIAAVELGRRVDPAALSGSLVITPTANPLGLDNRTKTAPQDLQDLDQTFPGNP
FT                   QGMVTNHMAHALFQEVRAVASCLVNMHTMGSIHDSKPYCVYKVFPGSAVTEAQLLRMTS
FT                   FFEPSVSCRMDVGGAGELPGNIAGGLDYQCLAIDVPAFMVELGQGSWYTPENVEQALTG
FT                   LLRLASHLGLIDESGVSAGAPAPASVRRVTRRRWVMARHGGLFLAAGRAGQIVPAGAPL
FT                   GRIVDLHGAEVEAVSLDTDCIVIGMRRDPVVHTGDRVAFVATQWDQADIGAG"
FT   CDS             complement(269848..271089)
FT                   /transl_table=11
FT                   /gene="metC"
FT                   /locus_tag="BB3865"
FT                   /product="cystathionine beta-lyase"
FT                   /EC_number="4.4.1.8"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0815"
FT                   /db_xref="GOA:Q7WCR6"
FT                   /db_xref="HSSP:1CL2"
FT                   /db_xref="InterPro:IPR015422"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WCR6"
FT                   /protein_id="CAE35839.1"
FT                   /translation="MRGRAFRSCPGGACRAAGRSVRTLSLLQVLMKFDTLLTHGGRDPK
FT                   AHKGMVNTPVYRTSTVVFESMAEYKATRGAKFDHVRYGRLGTHTVKELENLVAAIEGGH
FT                   RAVLTPSGVSAIATTLNTLARPGSHILVPDNVYYPCREFCEKVLAPRGVRVEYYAGSEV
FT                   ERLVRPDTSVVYCESPGSLTMEMQDFARIAAAAHAVGAKVVADNTWATPVFLQPFEHGI
FT                   DVSIHAATKYLVGHSDVMMGTVTAHDPELWLAIRTEAAAQGLSISPDDAYLATRGIRTL
FT                   GVRMAAHYRNALDVAQWLAGHPRVAQVLYPALPQHPDHALWRRQMRGASGLLTLELEPC
FT                   SLEQRDAFIDRLTLFAIGASWGGYESLVLPADTAGKRSLAGRDYAGPLVRLHIGLEDVE
FT                   DLKRDLDQALRRED"
FT   misc_feature    complement(269860..270990)
FT                   /note="HMMPfam hit to PF01053, DE Cys/Met metabolism
FT                   PLP-dependent enzyme, score 2.5e-132"
FT   misc_feature    complement(270379..270423)
FT                   /note="PS00868 Cys/Met metabolism enzymes
FT                   pyridoxal-phosphate attachment site."
FT   CDS             271170..272093
FT                   /transl_tab