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EBI DbfetchID BX640447; SV 1; linear; genomic DNA; STD; PRO; 349442 BP. XX AC BX640447; XX DT 09-AUG-2003 (Rel. 76, Created) DT 29-JUL-2008 (Rel. 96, Last updated, Version 6) XX DE Bordetella bronchiseptica strain RB50, complete genome; segment 11/16 XX KW complete genome. XX OS Bordetella bronchiseptica OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Bordetella. XX RN [2] RP 1-349442 RA Sebaihia M.; RT ; RL Submitted (06-AUG-2003) to the EMBL/GenBank/DDBJ databases. RL Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute, RL Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail: RL ms5@sanger.ac.uk XX RN [3] RA Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E., RA Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., RA Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A., RA Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I., RA Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., RA Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., RA Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., RA Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., RA Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., RA Barrell B.G., Maskell D.J.; RT "Comparative analysis of the genome sequences of Bordetella pertussis, RT Bordetella parapertussis and Bordetella bronchiseptica"; RL Nat. Genet. 35(1):0-0(2003). XX DR EMBL-CON; BX470250. DR RFAM; RF01118; PK-G12rRNA. DR SILVA-LSU; BX640447. DR SILVA-SSU; BX640447. XX FH Key Location/Qualifiers FH FT source 1..349442 FT /organism="Bordetella bronchiseptica" FT /strain="RB50" FT /mol_type="genomic DNA" FT /db_xref="taxon:518" FT CDS complement(820..1731) FT /transl_table=11 FT /locus_tag="BB3251" FT /product="probable LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1242" FT /db_xref="GOA:Q7WHF7" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WHF7" FT /protein_id="CAE33743.1" FT /translation="MDRLKAMQVFVEVADRGSLSAAAMHLGMSRAMVSRYLAELEAWVG FT VRLLHRTTRRLSLTPAGSETLPRCRRMLEMVGDMREAVAAPDAEPRGLLRVTAAMSFGG FT AQLAEAVAEFVRRHPAASIDLLLVDRAVNLVEERVDLAVRITNDLDPNLIGRRLADCRS FT VVCAAPQYLQQHGAPARAEDLSLHNCLTHSYFGRSLWRFERAGEPVEVPVGGNITANET FT DVLMRAALAGAGIVMLPTYLAAGQIAAGTLRPLLPDCAPPVLGIHGVYVSRKQMPLILR FT TMLDFLAERFNPAPWDAALEGR" FT misc_feature complement(856..1473) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 5.9e-44" FT misc_feature complement(1543..1722) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 3.9e-21" FT misc_feature complement(1588..1680) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 1836..2426 FT /transl_table=11 FT /locus_tag="BB3252" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1241" FT /db_xref="GOA:Q7WHF6" FT /db_xref="InterPro:IPR000415" FT /db_xref="UniProtKB/TrEMBL:Q7WHF6" FT /protein_id="CAE33744.1" FT /translation="MNAPLSLAAQEQIFQAARTFNRYTEQSISDATLHELYELMKWGPT FT AMNSQPGRFIFLRSAAARQRLAPALSPGNLEKTLAAPVTVIVAQDTQFYEHLPTQFSAY FT DARPVFENNADAARATAMRNSSLQGAYLIVAARMLGLDAGPMSGFDAAKVDAEFFPDGR FT CKANFLVNLGYGDPAGNYPRGPRLAFDTAAQIL" FT misc_feature 1860..2318 FT /note="HMMPfam hit to PF00881, DE Nitroreductase family, FT score 7.8e-09" FT CDS complement(2479..3576) FT /transl_table=11 FT /locus_tag="BB3253" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1240" FT /db_xref="InterPro:IPR011629" FT /db_xref="UniProtKB/TrEMBL:Q7WHF5" FT /protein_id="CAE33745.1" FT /translation="MLRRVRPPPVAWAARPFRGGNGAGGPAHGKAMDAFKQDSRIGVTV FT LTGFLGSGKTTLLNRLVQEPEYAEAVVIVNEFGDIGVDHHLVRNVDDRIVLLEGGCICC FT TASGGLVDTLRDLFMLAVRRRIKPFKRVLLETTGLAGPASVMFSLRHDPFLAERYAYHG FT AIAMVDAQHVREQLMVQPEAAQQIALADLVVFSKADLAGQAQLASAMRDVARANPGVPM FT CVVRRGEPLDERLRGDFLVRERRQAAPLGRWLGAFAAPPGGPHPNVAHFSLNLSVPLTR FT GMFLARMSEIQAAYDRGILRIKGLVCFEAEALPCAVHGVHRQLYPLEALPQWPGDDRQS FT RLVFILRGLDRDAVRADVARRLQQG" FT misc_feature complement(2491..3459) FT /note="HMMPfam hit to PF02492, DE Cobalamin synthesis FT protein/P47K, score 1.2e-60" FT misc_feature complement(3412..3435) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 3693..4028 FT /transl_table=11 FT /locus_tag="BB3254" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1239" FT /db_xref="UniProtKB/TrEMBL:Q7WHF4" FT /protein_id="CAE33746.1" FT /translation="MAMHHARSGELIDLRPLGESLRETVSQALVRADHLEVMRLVLPRD FT QQLPSHAIDASAITIQCLEGAVMLTAQDTTQRMPAGTLVYLAPGVAHAVKALEDSTLLV FT TLMLARP" FT tRNA complement(4155..4230) FT /note="tRNA Asn anticodon GTT, Cove score 87.19" FT tRNA 4402..4477 FT /note="tRNA Thr anticodon CGT, Cove score 90.68" FT CDS complement(4527..5171) FT /transl_table=11 FT /locus_tag="BB3255" FT /product="putative glutathione-S-transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1238" FT /db_xref="GOA:Q7WHF3" FT /db_xref="HSSP:1E6B" FT /db_xref="InterPro:IPR012335" FT /db_xref="UniProtKB/TrEMBL:Q7WHF3" FT /protein_id="CAE33747.1" FT /translation="MELYSYFRSSAAYRVRIALNLKGLPYDYRAVHLLKDGGQQLAPQY FT RALNPNALVPALVDGDAVLTQSLAIVEYLEETHPQPPLLPSDALGRARVRAIAQTIACD FT IHPLNNLRVLKYLKHELKVSEEAKNAWYKHWVELGLAGVEAMLAGAPQTGRFCHGDAPT FT LADLCLVPQLANARRFGCDLSAMPTLARIEAACAELPAFQQAAPAAQPDAE" FT misc_feature complement(4944..5171) FT /note="HMMPfam hit to PF02798, DE Glutathione FT S-transferase, N-terminal domain, score 3.9e-14" FT CDS complement(5210..6190) FT /transl_table=11 FT /gene="lytB" FT /locus_tag="BB3256" FT /product="putative drug tolerance protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1237" FT /db_xref="GOA:Q7WHF2" FT /db_xref="InterPro:IPR003451" FT /db_xref="UniProtKB/Swiss-Prot:Q7WHF2" FT /protein_id="CAE33748.1" FT /translation="MMTAEVTAADAEVLLAQPRGFCAGVDRAIDIVERALELHGAPIYV FT RHEIVHNRYVVEDLRGKGAVFIDELDQAPAGAIVVFSAHGVSQAVRGEAEARGLRVFDA FT TCPLVTKVHIEVARMRAAGREIVMIGHKGHPEVEGTLGQAQGGMYLVETVEDVAALRVS FT DPGNLAYVTQTTLSVDDAAAVAGALKARFPGIVEPKKSDICYATQNRQDAVKLLAPECD FT LVLVVGSTNSSNSNRLREVAERKGVAAYLIDGAHAIDPAWLQGRRSIGITAGASAPEVL FT VQQVVERVRELGAVSVRTMPGLEESVAFPLPKGLSRKIAQTESLE" FT misc_feature complement(5315..6154) FT /note="HMMPfam hit to PF02401, DE LytB protein, score FT 2.9e-163" FT CDS complement(6187..6663) FT /transl_table=11 FT /gene="fkpB" FT /gene_synonym="slpA" FT /locus_tag="BB3257" FT /product="FkbP-type peptidyl-prolyl cis-trans isomerase" FT /EC_number="5.2.1.8" FT /note="ortholog of Bordetella pertussis (BX470248) BP1236" FT /db_xref="GOA:Q7WHF1" FT /db_xref="HSSP:1IX5" FT /db_xref="InterPro:IPR001179" FT /db_xref="UniProtKB/TrEMBL:Q7WHF1" FT /protein_id="CAE33749.1" FT /translation="MSAASENVNVLVRPDSYLTLHYRIVLASGPAEGSVFTDTFDGRPA FT TLQMGSGQWAPGLEAALLDHAEGERFSVALAPAQAYGERNPDLIQKVTRAMLAEHAGAD FT AAFEPGDLVEFAAPNGGRYSGVLKEINADWAMFDFNHPLAGTALRVDVAILGVL" FT misc_feature complement(6199..6651) FT /note="HMMPfam hit to PF00254, DE FKBP-type peptidyl-prolyl FT cis-trans isomerase, score 0.00071" FT CDS 6716..7393 FT /transl_table=11 FT /gene="radC" FT /locus_tag="BB3258" FT /product="DNA repair protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1235" FT /db_xref="GOA:Q7WHF0" FT /db_xref="InterPro:IPR001405" FT /db_xref="UniProtKB/Swiss-Prot:Q7WHF0" FT /protein_id="CAE33750.1" FT /translation="MSLPEPLLRADWPRERLLRHGAATLSDPELLALALRTGVAGCNAV FT QLGHDLLRRFGGLRGLLGTSPAELQVVPGLGTAKACVLAAVLELARRTLEEDLVRQDAL FT ANPDLVRRYCQAALGHRKVEHCIALYLDARLKLIICAEVARGTLTQAQIYPREIVREAL FT RHHAAALILAHNHPGGTAAASAADIAMTRQIRQALALIDVRLIDHVIVAGAATVSMAAQ FT GHL" FT CDS 7480..8109 FT /transl_table=11 FT /locus_tag="BB3259" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1234" FT /db_xref="GOA:Q7WHE9" FT /db_xref="InterPro:IPR007325" FT /db_xref="UniProtKB/Swiss-Prot:Q7WHE9" FT /protein_id="CAE33751.1" FT /translation="MKRLWDISPPVSADSPVFPGDTPYRQQWKWSLTPDCPVNVSEITL FT SPHIGAHADAPLHYENGAAAIGAVALEPFLGPCRVIHAIGCGPLILPEHLAHAQAGLPP FT RVLVRTARHAALQWWVDDFSAYAPQTIEWLAGRGVTLIGIDTPSIDPASSKTLDSHHAI FT RRHDMRVLENLRLDDVDEGDYELIALPLALVQADASPVRAVLRELA" FT CDS 8137..8991 FT /transl_table=11 FT /locus_tag="BB3260" FT /product="putative tryptophan oxygenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1233" FT /db_xref="GOA:Q7WHE8" FT /db_xref="InterPro:IPR004981" FT /db_xref="UniProtKB/Swiss-Prot:Q7WHE8" FT /protein_id="CAE33752.1" FT /translation="MQPTPTQRPEAIVHDEKAQLDFARDMSYGDYLHLDELLGAQHPLS FT PEHNEMLFIVQHQTSELWMKLMLHELRAAIAAIQQDRLQPAFKMLARVSKILEQLVSAW FT DVLATMTPPEYSALRPYLAHSSGFQSYQYRQIEYLLGNKNAAMLQPHAHRADLLAQVRA FT AFEAPSLYDEALRFLARSGLAVPAGALQRDWTQPYRADDQVEQAWLTVYRQSERYWNQY FT QLGEKLTDLEDAFRLWRFRHVTTVERIIGFKRGTGGTSGVTYLRKMLEVVLFPEIWKLR FT TDL" FT misc_feature 8182..8985 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03301, DE Tryptophan FT 2,3-dioxygenase, score 2.6e-97" FT misc_feature 8863..8892 FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2." FT CDS 9160..9426 FT /transl_table=11 FT /locus_tag="BB3261" FT /product="50S ribosomal protein L31" FT /note="ortholog of Bordetella pertussis (BX470248) BP1232" FT /db_xref="GOA:Q7WHE7" FT /db_xref="InterPro:IPR002150" FT /db_xref="UniProtKB/Swiss-Prot:Q7WHE7" FT /protein_id="CAE33753.1" FT /translation="MKEGIHPEYREVVFMDVQTGNKFITRSTIHTRETVEMDGKTYPLF FT KCDVTSESHPFYTGAQTRIVETGRVEKFRARFARTAGTVKSAS" FT misc_feature 9160..9399 FT /note="HMMPfam hit to PF01197, DE Ribosomal protein L31, FT score 4.5e-09" FT misc_feature 9319..9375 FT /note="PS01143 Ribosomal protein L31 signature." FT CDS 9542..11278 FT /transl_table=11 FT /locus_tag="BB3262" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1231" FT /db_xref="UniProtKB/TrEMBL:Q7WHE6" FT /protein_id="CAE33754.1" FT /translation="MSPISRSTPARLTVQATAKLPRLVLLGLSLIYIVAGLFMRDPWKT FT DDVVGLATMVTALREGGMTWLLPQVGHLAHAEEGPMITWVGGASMWLFGPWLGDITAGR FT LPNLLWFGIATVSVWYGTYLLGRRAEAQPLKLPFGGEPAARDYGRMLADAALLLLLATV FT GILQRLHETSVVPAIMAWQALAFYAMARTLDRPFLGATTLGVAVAGAFLTRGWIGAAPV FT MVAAVLAFYPRSLLWQRVRWLPWAALIAAALMLAWWLPATLAEGSDYWIRNWKTWTLAS FT YDWPDLRITGRTLRDLPWYLWPTWPLALLAIWRWRAWLYAPHIWVPLVLAATAALMLLF FT LDGPNDAEYAMLAVPCAILGAFSLPTLRRGVVNTLDWFAVMCFSLTAATAWLGWVALHF FT GWPAQISRNIARQTTGYEASISWLASALALVISAAWVVLVVWRLRSRPLALWRGTVLSA FT GGLTATWILLVLLWQPAVDYARSYRTVSGQLAEALQANLQPGECVRGLSLGSGQRASFL FT VFDNMSFTYDSKCTLVLQQTTHSSLRDGTAAYSDGATELWRGGRRADRHEVFRLLRVTP FT TR" FT misc_feature join(9599..9658,9782..9835,9854..9922,9980..10039, FT 10058..10117,10160..10228,10265..10333,10496..10564, FT 10583..10642,10670..10738,10796..10864,10892..10960) FT /note="12 probable transmembrane helices predicted for FT BB3262 by TMHMM2.0 at aa 20-39, 81-98, 105-127, 147-166, FT 173-192, 207-229, 242-264, 319-341, 348-367, 377-399, FT 419-441 and 451-473" FT CDS 11275..12681 FT /transl_table=11 FT /gene="norM" FT /locus_tag="BB3263" FT /product="multidrug resistance protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1230" FT /db_xref="GOA:Q7WHE5" FT /db_xref="InterPro:IPR002528" FT /db_xref="UniProtKB/TrEMBL:Q7WHE5" FT /protein_id="CAE33755.1" FT /translation="MIPAAAPSPGFGATMRDIARQAWPVLISQWAGISFGVLDTAMTGH FT ASPQDLAAMSLSVSVYITVFVGLMGVVHALIPILAQHFGAGQQREVGSTWGQGVWLALG FT LSVVGAILMLFPDAWLSLSGDVDPAVRDRVAAYLRALVLALPATLVFRTIYALGTAVSR FT PKVVMSINLAAVFVKAFCNWVLIYGKFGLPALGAVGAGLATAISGWLSLAAGLWIITHD FT RYYRRFRLRVGRPDWRALKELLRLGLPMGGSYLVEVSAFTFMALLVAREGTYVSGGHQI FT MSNLAALCYMMPMALGVATAALTAQAIGAGRPDLAHRTGMAGLALGLLGAALTAAVLLV FT GRPLIIAAYTDDLEVAAVAASLLAIIPLFHLCDSMQCINSYLLRAHKVAVMPLVLQTVA FT LGGVGLLGGWWLGFGPGRGGLDPVRAALMPGSPAGAGTMWLMAMAGLGLSAVLLHYWYR FT RIARLALARG" FT misc_feature join(11335..11403,11446..11514,11551..11619,11677..11745, FT 11782..11835,11863..11931,12004..12072,12115..12183, FT 12241..12309,12337..12390,12451..12519,12577..12645) FT /note="12 probable transmembrane helices predicted for FT BB3263 by TMHMM2.0 at aa 21-43, 58-80, 93-115, 135-157, FT 170-187, 197-219, 244-266, 281-303, 323-345, 355-372, FT 393-415 and 435-457" FT misc_feature 11341..11826 FT /note="HMMPfam hit to PF01554, DE Uncharacterized membrane FT protein family UPF0013, score 4.1e-17" FT misc_feature 11467..11484 FT /note="PS00267 Tachykinin family signature." FT misc_feature 12016..12504 FT /note="HMMPfam hit to PF01554, DE Uncharacterized membrane FT protein family UPF0013, score 1.6e-19" FT CDS complement(12749..12976) FT /transl_table=11 FT /locus_tag="BB3264" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1229" FT /db_xref="UniProtKB/TrEMBL:Q7WHE4" FT /protein_id="CAE33756.1" FT /translation="MTTQSRIAAFLSTSALCLGLAAAPSAYAAQGDTQSGAKSSVKAPS FT GGKHAKGEKHAKSGAHHGAHHAKTGSTSTK" FT misc_feature complement(12890..12958) FT /note="1 probable transmembrane helix predicted for BB3264 FT by TMHMM2.0 at aa 7-29" FT misc_feature complement(12893..12976) FT /note="Signal peptide predicted for BB3264 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.992 between residues 28 and 29" FT CDS complement(13135..13908) FT /transl_table=11 FT /locus_tag="BB3265" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1228" FT /db_xref="GOA:Q7WHE3" FT /db_xref="InterPro:IPR002781" FT /db_xref="UniProtKB/TrEMBL:Q7WHE3" FT /protein_id="CAE33757.1" FT /translation="MSLLVIAACLASGALIGFMGGALGIGGGLIAIPALGLLLGMPQQL FT AQGTALIMVLPTIMMAVRKYHQHARIDMRVAGAGAAGAVVFTWVGAQLALGIASRTLRL FT SFAVFLFFIALFYVYQTVRKRAAAAPAAPARPAPVLSPPRASVLGVLCGTLGGFFGVGG FT AVLAVPIITSVFRLPQTMAQALALTMVIPGSMIALVTYTWAGQADWWIGVPLAAGSLVF FT VPVGVRLAYRLPERKLRACFAAMLFATVALLIFEA" FT misc_feature complement(join(13144..13197,13216..13284,13297..13365, FT 13552..13605,13618..13686,13723..13776,13804..13872)) FT /note="7 probable transmembrane helices predicted for FT BB3265 by TMHMM2.0 at aa 13-35, 45-62, 75-97, 102-119, FT 182-204, 209-231 and 238-255" FT misc_feature complement(13147..13644) FT /note="HMMPfam hit to PF01925, DE Domain of unknown FT function DUF81, score 2.2e-09" FT misc_feature complement(13837..13908) FT /note="Signal peptide predicted for BB3265 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.676 between residues 24 and 25" FT CDS complement(13931..15184) FT /transl_table=11 FT /gene="radA" FT /gene_synonym="sms" FT /locus_tag="BB3266" FT /product="DNA repair protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1227" FT /db_xref="GOA:Q7WHE2" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WHE2" FT /protein_id="CAE33758.1" FT /translation="MESAASSAGGHRYAPLAAASPVRSLSEIEARETPRQPTGLDEFDR FT VLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSATTKVLYVTGEESAEQVALRARRLG FT LQTGNVDLLAEIRLEAIQAAVSEQKPTVAVIDSIQTLYSGELTAAPGSVSQVRECAAQL FT TRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEGDTHSSFRLVRAFKNRFGA FT VNELGVFAMTDRGLRGVANPSALFLSQHQQQVAGSCVLATQEGTRPLLVEVQALVDTSH FT APNPRRLTVGLEGNRLAMLLAVMHRHAGVSTYDQDVFVNAVGGVRITEPAADLPVLLAI FT MSSLRDKPLPAGLVAFGEIGLAGEIRPAPRGQERLREAAKLGFSVALIPKANAPRQPIE FT GLEIWAVDRLDAALDKLR" FT misc_feature complement(14411..14443) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature complement(14981..15004) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 15419..17134 FT /transl_table=11 FT /locus_tag="BB3267" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1226" FT /db_xref="InterPro:IPR002035" FT /db_xref="UniProtKB/TrEMBL:Q7WHE1" FT /protein_id="CAE33759.1" FT /translation="MTPILRPSPLLCTVLSLAMLSACSPTEPPSAGVAGQPAAVPGQPA FT PQAVPAAPRGEPAGAPQRELAAQTYMPPAPHAAARAHADQARMRIMPAPMPVIQEDREN FT YAGYQDNPVQLAQEQPVSTFGLDVDTGSYSNVRRLLNDGRLPPADAVRAEAFINYFDYG FT YPAPATPAVPFSLTTEIAPAPWNAQRQLLLVGIQGYRVAPQDIPAVNLVLLIDTSGSMA FT DRAKLPLLKSALRQLVTQMRAQDRVAIVAYAGSAGLVLPSTPGDRHAQILAAIDGLQAS FT GSTNGGAGLELAYAEAAKGLVKDGVNRIVLASDGDFNVGRTDLAQLKDYVGSQRKRGIA FT LTTLGLGSGNYNDAMAMQLANAGDGSYHYIDSLLQARKVFASELSATLLTIAKDVKVQV FT EFNPARVAEYRLIGYEKRALAREDFNNDAVDAGELGAGANVTALYEITPAGAAQRIDAL FT RYGQPARAADSPRDELAYVRIRYQSPEGGASRLIEQPVAAEAAAPAASARLNRAAAAAA FT FAQWLRGGKYLDGYAPQAIAALARQSRGADPLGLQAEFANLVELAASLGTPAAR" FT misc_feature 15419..15517 FT /note="Signal peptide predicted for BB3267 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.995) with cleavage site FT probability 0.331 between residues 33 and 34" FT misc_feature 15455..15487 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 16046..16570 FT /note="HMMPfam hit to PF00092, DE von Willebrand factor FT type A domain, score 0.00013" FT CDS 17140..17790 FT /transl_table=11 FT /locus_tag="BB3268" FT /product="putative Ecf-type RNA polymerase sigma factor" FT /note="ortholog of Bordetella pertussis (BX470248) BP1225" FT /db_xref="GOA:Q7WHE0" FT /db_xref="InterPro:IPR007630" FT /db_xref="UniProtKB/TrEMBL:Q7WHE0" FT /protein_id="CAE33760.1" FT /translation="MTALAVAPASAACAIAAEAIHCAAMDTASAADEALMLAYGAEGDM FT DAFDALYARHRAGLYRYILRSARNAAQADDIFQETWSRVIDARARYRPQARFTTWLLQI FT AHNLLVDAHRRQPAPVAPEQAEAALASVPAAEHEQPEARLSEFQQRRRLQLAIERLPDE FT QRLAMLLRLEHDLDVEEIAQVTGVSRETVKSRLRYATRRIREELSSESAPRSP" FT misc_feature 17140..17187 FT /note="Signal peptide predicted for BB3268 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.992) with cleavage site FT probability 0.793 between residues 16 and 17" FT misc_feature 17146..17178 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 17320..17487 FT /note="HMMPfam hit to PF00776, , score 2.6e-13" FT CDS 17794..18516 FT /transl_table=11 FT /locus_tag="BB3269" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1223" FT /db_xref="UniProtKB/TrEMBL:Q7WHD9" FT /protein_id="CAE33761.1" FT /translation="MNPHLPPDDDDRDLRALYRELPRHEPDIMLDASIREQAQRAAEAD FT RRARRPRATWHPAWAVAACVVAVSALFVFTDLEQYALQPAAEVELQAEQEAAQATRDAM FT PEPPAPDPALAAPPPLGAPAPAPALPPALAPEAARGAAAESSAQDAAPARRGYMPQRAA FT PAVRAEKQQQENLAASARQRDDPAYAQRVERIRALVREGKPQEAAAQVLAWRRAAPGLA FT LPPDLEQLAPADGGTPGQ" FT misc_feature 17956..18015 FT /note="1 probable transmembrane helix predicted for BB3269 FT by TMHMM2.0 at aa 55-74" FT CDS complement(18530..19246) FT /transl_table=11 FT /locus_tag="BB3270" FT /product="probable short-chain dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1222" FT /db_xref="GOA:Q7WHD8" FT /db_xref="HSSP:1AE1" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7WHD8" FT /protein_id="CAE33762.1" FT /translation="MKDKCVLVTGATKGIGWALTQRLTDLGCHVVGIARNTADVDFPGY FT LYACDLADAGRTEEVLREIRDKFPVDAVVNNVGIVAPQALGEIDLATLYSVLDLNVRVA FT VQVTQTFVESMKVRRSGRIVNICSRAILGAYDRTSYSAAKSALVGCTRTWALELAEYGV FT TVNAVAPGPVETELFRRGHPAGSDAEKRAQASIPMKRFGTPAEVAAAVAFLLSDDAGFI FT TGQVLGVDGGGSLGGH" FT misc_feature complement(18548..19243) FT /note="HMMPfam hit to PF00106, DE short chain FT dehydrogenase, score 4.3e-61" FT CDS complement(19398..20525) FT /transl_table=11 FT /gene="dadX" FT /gene_synonym="dadB" FT /gene_synonym="alnB" FT /locus_tag="BB3271" FT /product="alanine racemase, catabolic" FT /EC_number="5.1.1.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP1221" FT /db_xref="GOA:Q7WHD7" FT /db_xref="HSSP:1NIU" FT /db_xref="InterPro:IPR000821" FT /db_xref="UniProtKB/TrEMBL:Q7WHD7" FT /protein_id="CAE33763.1" FT /translation="MPRPIFASISQSALRHNLATVRRHLDDVAAKADGTPPSIWAVIKA FT NAYGHGIEQAVAGFSAAQGLAMLDLQEAVRCREAGWGGPILLLEGFFQPSDLEIVDRYH FT LATTVHTREQFDMLAHARLSRRVDIMVKLNSGMNRLGFAPDAYGSAYARAQQLHEYGVV FT GGIGKMTHFACADGPQGVTQQMNVFNGATAHLAGATSVCNSAATLRYADLAVGHDGQTH FT WVRPGICLYGASPFADAQAGAFGLIPAMTLRSELIAVQDIPAGAAVGYGAIFRADRPMR FT IGVVACGYADGYPRHAGTGTPLTVGGVRTRLVGRVSMDMLMVDLDPVPAAGIGTPVVLW FT GEDGPSVDEVAEAAGTIGYELLCALAPRVPVRHEG" FT misc_feature complement(19404..20414) FT /note="HMMPfam hit to PF00842, DE Alanine racemase, score FT 2.3e-118" FT misc_feature complement(20373..20405) FT /note="PS00395 Alanine racemase pyridoxal-phosphate FT attachment site." FT CDS 20654..21484 FT /transl_table=11 FT /locus_tag="BB3272" FT /product="putative phytoene synthase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1220" FT /db_xref="GOA:Q7WHD6" FT /db_xref="InterPro:IPR008949" FT /db_xref="UniProtKB/TrEMBL:Q7WHD6" FT /protein_id="CAE33764.1" FT /translation="MAIDHYENFPVASLLLPRRLRGAVTDIYRFARAADDIADEGAAED FT AERLRQLAAFRAELHRIGAEPGTLAVPASADLAPIFTPLAATIARHQLPITPFFDLLSA FT FEQDISVKRYESHDDLLDYCRRSANPVGRLMLHLYGAVDEANLRDADAICTGLQLVNFW FT QDVRIDWRKQRVYLPEEDLRRHGVSRDDLAACRLTPQWRELMAFEVQRTRALLHSGAAL FT PRRLPGRIGLELRLVVQGGLRILQRIEDAGYDVFMNRPELGAKDWAVMLWRAFT" FT misc_feature 20678..21478 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00494, DE Squalene/phytoene FT synthase, score 3.1e-17" FT CDS 21486..22349 FT /transl_table=11 FT /locus_tag="BB3273" FT /product="putative phytoene synthase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1219" FT /db_xref="GOA:Q7WHD5" FT /db_xref="InterPro:IPR019845" FT /db_xref="UniProtKB/TrEMBL:Q7WHD5" FT /protein_id="CAE33765.1" FT /translation="MTPDEYCQEKAARSGSSFYYSFLFLPPARRRAITALYAFCREVDD FT VVDECSDPSLARVKLAWWRTQVDQMVDGKPDHPVTRALQPHLADCNITRERLLAVIDGM FT EMDLDQTRYLDWPGLRKYCWHVAGVVGELSAGVFGYQDARTLDYAGKLGLAFQLTNIIR FT DVGDDARRGRIYLPVNELQQFEVKAADILNGVHSERFSALMRFQAERARGLYREAMQAL FT PETDRRAQRPGLMMAAIYHALLDEIERDDWQVLHQRISLTPVRKLWLAWKTWVSGGAPL FT VRRLAR" FT misc_feature 21516..22322 FT /note="HMMPfam hit to PF00494, DE Squalene/phytoene FT synthase, score 1.5e-56" FT misc_feature 21849..21896 FT /note="PS01044 Squalene and phytoene synthases signature FT 1." FT misc_feature 21939..22016 FT /note="PS01045 Squalene and phytoene synthases signature FT 2." FT CDS 22346..23677 FT /transl_table=11 FT /locus_tag="BB3274" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1218" FT /db_xref="GOA:Q7WHD4" FT /db_xref="InterPro:IPR002937" FT /db_xref="UniProtKB/TrEMBL:Q7WHD4" FT /protein_id="CAE33766.1" FT /translation="MKVAVIGAGWAGLAASVALREADAKVTVFEAGRTPGGRARRVVHP FT EFGDDLDNGQHILLGAYGETLALMRRLGRNPDALLMRRPLRLASLDGGFRLTAPPLPAP FT LHAAAALLLARGLPWRSRVAAVRLMHYLRQMQWQAPRDWTVTQLLDHTRQPAGIRQSVW FT VPLCLAALNTPPAQASALLYAHILRDSLTGHRRNSDLLLPCADLSALWPDVAARQATMR FT YGNTVRRLTPQAHSVEVNGERFDAAVLAVSPQVAARLLENALAERGSSGLLRALQAFDY FT EPIATLNLRLAGPWPLPEPMMMLREEPARGFHGQWLFDRSRLTGRGERGELAVVVSAAR FT AVAAADREQAIAALTRQVAEQARRHPARLAPMPAVEIAELFVEKRATFAAVPGLARPLN FT STPWRSLALAGDWTDTGYPGVLEGAVRSGLQAARVVLGGAATQD" FT misc_feature 22346..22405 FT /note="Signal peptide predicted for BB3274 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.851) with cleavage site FT probability 0.458 between residues 20 and 21" FT misc_feature 22373..23653 FT /note="HMMPfam hit to PF01593, DE Flavin containing amine FT oxidoreductase, score 6.8e-16" FT CDS complement(23700..24086) FT /transl_table=11 FT /locus_tag="BB3275" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1217" FT /db_xref="GOA:Q7WHD3" FT /db_xref="InterPro:IPR003691" FT /db_xref="UniProtKB/Swiss-Prot:Q7WHD3" FT /protein_id="CAE33767.1" FT /translation="MLTFAPLNFLAIGVGATLGAWLRWVLGLRLNGAGWPWGTLTANLV FT GGYLIGVMVALIASHPEWPAWIRLAAVTGFLGGLTTFSTFSAETVDMLERGVYATAAAY FT AGASLAGSLAMTGLGLATVRLLLR" FT misc_feature complement(23718..24062) FT /note="HMMPfam hit to PF02537, DE CrcB-like protein, score FT 3.9e-29" FT misc_feature complement(join(23718..23786,23829..23897,23916..23984, FT 24012..24068)) FT /note="4 probable transmembrane helices predicted for FT BB3275 by TMHMM2.0 at aa 7-25, 35-57, 64-86 and 101-123" FT CDS complement(24096..24656) FT /transl_table=11 FT /locus_tag="BB3276" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1216" FT /db_xref="UniProtKB/TrEMBL:Q7WHD2" FT /protein_id="CAE33768.1" FT /translation="MVTDAVLNHAGREWGWVALRGVVAVLFGLMAVLMPGITLSALVLV FT WGAFALADGIFALIAGWRIRDQDKPLWPLILVGLTGIAAGIATFAWPGLTALVLLYIIA FT FWAVIGGVFQIAAAIRFRKDIENEWLHGLSGALSIVFGALLLFQPGAGALALVWVIGVY FT AVLFGVLLLALALRLKNHAATPA" FT misc_feature complement(join(24123..24191,24204..24272,24309..24377, FT 24387..24446,24465..24533,24543..24611)) FT /note="6 probable transmembrane helices predicted for FT BB3276 by TMHMM2.0 at aa 16-38, 42-64, 71-90, 94-116, FT 129-151 and 156-178" FT CDS complement(24757..25542) FT /transl_table=11 FT /gene="nodJ" FT /locus_tag="BB3277" FT /product="ABC transporter, permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1215" FT /db_xref="GOA:Q7WHD1" FT /db_xref="InterPro:IPR005981" FT /db_xref="UniProtKB/TrEMBL:Q7WHD1" FT /protein_id="CAE33769.1" FT /translation="MSAGAWGWPPLTRRCVAVLRRNFLVWRKTALTTVLGDVLDPVVAL FT LALGFGLGALLPGIEGVPYVTFLSAGSMCVGALYGATFEATYNAFSRLHVQRTWDAMLS FT TPLDLDDVVWAEILWAAAKALKSGIAILLVVVALDIARAPTLLWVPPVLALAGLAFASM FT ALVVSALARGYEFFMYYFTLGVTPMVFLSGVFFPASQLPAALAGPLQWLPVAPAVNLIR FT PLTLGQVPHAWWADVAQLAATAALGIWLVAVLMRRRLLR" FT misc_feature complement(24766..25485) FT /note="HMMPfam hit to PF01061, DE ABC-2 type transporter, FT score 0.00092" FT misc_feature complement(join(24781..24849,24949..25017,25036..25104, FT 25294..25362,25375..25443)) FT /note="5 probable transmembrane helices predicted for FT BB3277 by TMHMM2.0 at aa 34-56, 61-83, 147-169, 176-198 and FT 232-254" FT CDS complement(25539..26486) FT /transl_table=11 FT /gene="nodI" FT /locus_tag="BB3278" FT /product="ABC, transporter, ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1214" FT /db_xref="GOA:Q7WHD0" FT /db_xref="HSSP:1G9X" FT /db_xref="InterPro:IPR005978" FT /db_xref="UniProtKB/TrEMBL:Q7WHD0" FT /protein_id="CAE33770.1" FT /translation="MSSNPVSASCAPVLQVHGLTKRYGERVIVDGLSFALRRGECYGLL FT GPNGAGKTTTLRALLGLTPFDGGAVEVLGHAVPAQARQARARLGVVPQIDNLDPDFTVA FT ENLLVFGRYFGLSDAQVRARLPQLLAFAALAAKADARIGELSGGMKRRLTLARALINDP FT DLIIMDEPTTGLDPQARHLIWERLKALLARGKTILLTTHFMDEAERLCHRLGVIDHGRL FT ITEGAPRALIERCLEPQVVEVYGDDLHAWLDAHRAALPARVEVSGETAFCHTDDATPVV FT QALQGWPDLRYLHRPANLEDLFLRLTGRGMREDA" FT misc_feature complement(25827..26372) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.2e-60" FT misc_feature complement(25899..25922) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(26010..26054) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(26328..26351) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 26634..27263 FT /transl_table=11 FT /locus_tag="BB3279" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1213" FT /db_xref="InterPro:IPR005625" FT /db_xref="UniProtKB/TrEMBL:Q7WHC9" FT /protein_id="CAE33771.1" FT /translation="MDGKTSSKRRAYWLKTLHQWHWISSALCLLGMLLFAVTGLTLNNA FT SHIESRARVDTRHLELPAPLRAELAAAAPARPALPPALLEWLDRELDVDARGAAAKPEW FT SPDELYVSLPRPGGDAWLSIDLQSGELEYERTDRGWIAYLNDLHKGRHTGLAWSWFLDI FT FAVACLVFSLTGLVLLKMHAGNRAATWPMVGLGVVIPVVLALLFIH" FT misc_feature 26634..26741 FT /note="Signal peptide predicted for BB3279 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.988) with cleavage site FT probability 0.364 between residues 36 and 37" FT misc_feature join(26691..26759,27102..27170,27189..27257) FT /note="3 probable transmembrane helices predicted for FT BB3279 by TMHMM2.0 at aa 20-42, 157-179 and 186-208" FT CDS 27286..27801 FT /transl_table=11 FT /locus_tag="BB3280" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1212" FT /db_xref="InterPro:IPR014469" FT /db_xref="UniProtKB/TrEMBL:Q7WHC8" FT /protein_id="CAE33772.1" FT /translation="MRKLLLSALLAGLVARTAYAADLGLSVEIPRLDVAEYHRPYVAIW FT IEQADQSVAGDLAVWYDVAKKNNEGAEWLKDMRQWWRRSGRNQQFPVDGVSGATRPAGK FT HALSFAGTAKPLADLKPGKYAVVVEAAREVGGRELVRVPFDWPPQQAQQLTARGEHELG FT AIAVDLKP" FT misc_feature 27286..27345 FT /note="Signal peptide predicted for BB3280 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 20 and 21" FT CDS 27831..28631 FT /transl_table=11 FT /locus_tag="BB3281" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1211" FT /db_xref="InterPro:IPR019613" FT /db_xref="UniProtKB/TrEMBL:Q7WHC7" FT /protein_id="CAE33773.1" FT /translation="MKAVAKLAAALTLALPLAAQAHDVWVLPSSTVLSGVDSWITVDAA FT VGNDKFYFNHAPLRLDGLDIIAPDGSAAQAENVSRGKIRSTFDLQLKQNGTYRVAVVND FT GVFARWKEDGKPKRYFGKPEGMAAAVPANAQELEVSQSLGRVETFVTAGKPGAIKPVGK FT GLELVAVSHPNDLYSDEPATFQMLLDGKPAAGLEMEIVPNGSRYRDKIEEIELKTDADG FT KFQVKWPQPGMYWVHTEAEDDKVSVPKATKRRMSYALTLEVLRP" FT misc_feature 27831..27893 FT /note="Signal peptide predicted for BB3281 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 21 and 22" FT CDS 28636..29652 FT /transl_table=11 FT /gene="apbE" FT /locus_tag="BB3282" FT /product="thiamine biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1210" FT /db_xref="GOA:Q7WHC6" FT /db_xref="InterPro:IPR003374" FT /db_xref="UniProtKB/TrEMBL:Q7WHC6" FT /protein_id="CAE33774.1" FT /translation="MSMARPPSYAPPLAARMPSAPPRLSGEPVALAGATMGTTWSARLA FT LPPGVTRQQAQAAIAAALDEVVAQMSTWEAGSDISRFNRAATGWQALPEALFHVLSHAL FT DLADASGGAYDPTIGALVDAWGFGAGPRVHEPPAAAAIAAALADCGHARVRLDAQARSA FT WQPGGVRLDLSSIAKGYGVDRAALALRALGVTACLVEVGGELRAHGARPDGLPWRVAVE FT VPDASGAHALAVPLRDQSIATSGDYRRYIEQAGRRYAHTLDPRTGKPLDNDLASVTVIH FT PECMLADGLATALGVLGAAAGADYAARHDLAALFILRGAAGHEVRATPAFAALLDRP" FT misc_feature 28663..29598 FT /note="HMMPfam hit to PF02424, DE ApbE family, score FT 7.3e-82" FT CDS 29652..31031 FT /transl_table=11 FT /locus_tag="BB3283" FT /product="probable oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1209" FT /db_xref="GOA:Q7WHC5" FT /db_xref="HSSP:1J9Z" FT /db_xref="InterPro:IPR001094" FT /db_xref="UniProtKB/TrEMBL:Q7WHC5" FT /protein_id="CAE33775.1" FT /translation="MPLPPHPRLVAAAGLVLAWLLLCLWAWRQARMRAASQARALCALE FT ARPGPQTVLVAYASQTGFAAELAEHTAAALASGGLQARVAELGQIDAATLGHYARALFI FT VSTYGEGDPPDAAAPFADTAMQSGAGLGALRYAVLALGDSSYAHFCGFGHRLDDWLRAN FT GAAPLFDLVEVDAGDAAALRHWQHHLGVVTGCTDLPDWQAPAYQAWRLARRTLLNPGSQ FT GAPCYFIELTPPHGTAPQWQAGDIAEIGPRDAPDSPLHAHREYSIASLPADGAVHLLVR FT QMRSADGALGLGSGWLTHTAQTGQAIDLRVRANRNFHPPADARPLILVGNGTGLAGLRA FT LLKARRSAGHGRNWLVFGERSAAHDWFCRDELEQWHGEGWLEYVDAVFSRDAPQRRYVQ FT DLLRERAERVRDWIREGAAVYVCGSLHGMAEGVHQALADILGPAQLQALQHAGRYRRDV FT Y" FT misc_feature 29652..29750 FT /note="Signal peptide predicted for BB3283 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.789) with cleavage site FT probability 0.277 between residues 33 and 34" FT misc_feature 29679..29732 FT /note="1 probable transmembrane helix predicted for BB3283 FT by TMHMM2.0 at aa 10-27" FT misc_feature 29805..30230 FT /note="HMMPfam hit to PF00258, DE Flavodoxin, score FT 1.1e-31" FT misc_feature 30618..30956 FT /note="HMMPfam hit to PF00175, DE Oxidoreductase FT NAD-binding domain, score 1.1e-17" FT CDS complement(31047..32003) FT /transl_table=11 FT /locus_tag="BB3284" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1208" FT /db_xref="GOA:Q7WHC4" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7WHC4" FT /protein_id="CAE33776.1" FT /translation="MRKTLAVLALMAALPAAHADFPERPITLIVPFPAGGPTDIVGRVA FT AAKAGEILGQQIVVENRTGAAGTIGITATARAKPDGYTLGLATVSTHGTAPHLFPNLAY FT DPVKDFTPVSNLVTSPNILSVNPSYPAADLGAFVAHVRANPGRDGYANAGAGGVNDLGM FT IWFLQLIGGKMTSIAYRGSAPALTDAVSGVVPVIFDNFPSSLPYIKSGHLRPLAITGAA FT RNPRLPEVPTFAEQGYRDYDVTAWYGVVAPAGLPDAVRDKLAQAFAQAVRDPATAAKME FT ETGAFPLGNTPAEFAAQIQAEQARWKTVIEKADIKLQ" FT misc_feature complement(31059..31883) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 2.4e-90" FT misc_feature complement(31947..32003) FT /note="Signal peptide predicted for BB3284 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 19 and 20" FT CDS complement(32051..33493) FT /transl_table=11 FT /locus_tag="BB3285" FT /product="N-acyl-D-glutamate deacylase" FT /EC_number="3.5.1.82" FT /note="ortholog of Bordetella pertussis (BX470248) BP1207" FT /db_xref="GOA:Q7WHC3" FT /db_xref="InterPro:IPR012855" FT /db_xref="UniProtKB/TrEMBL:Q7WHC3" FT /protein_id="CAE33777.1" FT /translation="MQNAEKLDFKITGGWIIDGTGAPRRRADLGVRDGRIAAIGELGAH FT PARHAWDASGKIVAPGFIDVHGHDDLMFVEKPDLRWKTSQGITTVVVGNCGVSAAPAPL FT PGNTAAALALLGETPLFADVPAYFAALDAQRPMINVAALVGHANLRLAAMRDPQAAPTA FT AEQQAMQDMLQAALEAGAVGFSTGLAYQPGAVAQAAELEGLARVAAERRRLHTSHIRNE FT ADGVEAAVEEVLAIGRGTGCATVVSHHKCMMPQNWGRSRATLANIDRAREQGVEVALDI FT YPYPGSSTILIPERAETIDDIRITWSTPHPECSGEYLADIAARWGCDKTTAARRLAPAG FT AIYFAMDEDEVKRIFQHPCCMVGSDGLPNDARPHPRLWGSFTRVLGRYVREARLMTLEQ FT AVARMTALPARVFGFAERGVLQPGAWADVVVFDPDTVADRATWDEPTLASVGIAGVLVN FT GAEVFPQPPADGRPGQVLRAGA" FT CDS 33598..34560 FT /transl_table=11 FT /locus_tag="BB3286" FT /product="LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1206" FT /db_xref="GOA:Q7WHC2" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WHC2" FT /protein_id="CAE33778.1" FT /translation="MNRLPKHVTLKHLTAFVAVAQESSFTHAARRLFQTQSSVTTLVRQ FT LETALGTQLFARTSRKVLLSAAGQDFLPRVMRLLADFDGVIEDVVRYGALERGRVSVAA FT APSAITQLIAPAAADFARRHPAIRLYLRDDNSGRIQRQVAAQEVDFGLTSRWADAPGLA FT FDPLLEDRFGVLYRADDTSIQPGRDGHVRWERLSHRKLVGVVDETGIMALLRARADLPI FT EAAAPFYEASSTTSQAALVKAGLGVALLPALAAERVREPGLAFALLARPTVMRTLCIIG FT HQERALSPAAAALIDTLRAYVRQATLPAGCRPAGRNSRA" FT misc_feature 33598..33681 FT /note="Signal peptide predicted for BB3286 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.801) with cleavage site FT probability 0.764 between residues 28 and 29" FT misc_feature 33625..33804 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 4.1e-21" FT misc_feature 33667..33759 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 33874..34506 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 7e-31" FT CDS complement(34568..35020) FT /transl_table=11 FT /locus_tag="BB3287" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1205" FT /db_xref="InterPro:IPR019587" FT /db_xref="UniProtKB/TrEMBL:Q7WHC1" FT /protein_id="CAE33779.1" FT /translation="MSHLVYVSRVVAAPIERVWPHLRDFNGLSAWHPGVADSRLEEGGR FT DDAPGTVRFLSLNPSGYVRERLLMLDDAGRSLRYAIIETDLPMRDYVAGVDLCPVTEGG FT GTFAQWWADFDVVAGANRDEVARLVGEGVFAAGLQALDQYLRGRQA" FT CDS complement(35088..35918) FT /transl_table=11 FT /locus_tag="BB3288" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1204" FT /db_xref="InterPro:IPR009215" FT /db_xref="UniProtKB/TrEMBL:Q7WHC0" FT /protein_id="CAE33780.1" FT /translation="MPRFERSALLDKFQDMVRRRQPIVGGGAGTGLSAKCEEAGGIDLI FT VIYNSGRYRMAGRGSLAGLLAYGNANDIVLDMAREVLPVVRHTPVLAGVNGTDPFCNFD FT AFLDELARVGFSGVQNFPTVGLIDGTFRANLEETGMGYGLEVEMIRLAHAKGLLTTPYV FT FDPDQARAMTAAGADIVVAHMGLTTGGNIGAETALSLDDCVARIDAIAAAALAERGDVI FT VLCHGGPIATPQDAAHVLQRCRHCHGFYGASSMERLPAEQALTATTRAFKQLSF" FT misc_feature complement(35175..35192) FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT CDS complement(35928..37136) FT /transl_table=11 FT /locus_tag="BB3289" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1203" FT /db_xref="InterPro:IPR008322" FT /db_xref="UniProtKB/Swiss-Prot:Q7WHB9" FT /protein_id="CAE33781.1" FT /translation="MQEIEQRIYLAATYDTKGEEAEYLRQLLRRDGVMVVTVDVATSGQ FT GSPAMVSAQEVAACHPQGAQAVFTGERGSAIVAMALAFERYLAGQRDVGAVLGIGGSGG FT TALVTPAMRALPVGVPKLMVSTMASGNVAPYVGPSDIAMMYSVTDVAGLNRISRRVLAN FT AAGAIAGAFRQARQPIADDGRPAVGITMFGVTTPCVQHVTAALHDRYDCLVFHATGTGG FT QSMEKLADSGLLAGVLDLTTTEVCDFLFGGVLACTDDRFGAIARSGVPYVGSCGALDMV FT NFGALDTVPAACRERLLYPHNPQVTLMRTTAQENARQGAWIAERLNRCEGQVRFLIPEG FT GVSALDAPGQAFYDEAADAALFQALYDHVRQTDRRRLVRVPCHINDPLFARAAVEQFHE FT ISQ" FT misc_feature complement(36489..36509) FT /note="PS00290 Immunoglobulins and major histocompatibility FT complex proteins signature." FT CDS 37300..37983 FT /transl_table=11 FT /locus_tag="BB3290" FT /product="TetR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1202" FT /db_xref="GOA:Q7WHB8" FT /db_xref="InterPro:IPR012287" FT /db_xref="UniProtKB/TrEMBL:Q7WHB8" FT /protein_id="CAE33782.1" FT /translation="MIAPASPQAALSGEPPHGPRARMRRTLLDTAQRLMAQGITPSVAE FT LAEAAAVSRATAYRYFPSQSALIAAVVDQSLGPILQWRAQSDDTAERIDELLRFAYPRL FT QQHEASLRAAIMVSLQQYAEASAGQNPDTPRLVRGHRVDTLKHVTAPLASQLEPAAHQR FT VMRALSLLYGTEVFLILKDIWHLELDDIVDVVTWAAQAIVRQAQQEAGLTPDPGKPRGK FT RKQMP" FT misc_feature 37378..37512 FT /note="HMMPfam hit to PF00440, DE Bacterial regulatory FT proteins, tetR family, score 1.1e-07" FT CDS complement(join(38051..39577,39586..39981)) FT /pseudo FT /transl_table=11 FT /gene="tcfA" FT /locus_tag="BB3291" FT /product="tracheal colonization factor precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP1201" FT misc_feature complement(38054..38884) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03797, DE Autotransporter FT beta-domain, score 1.4e-77" FT CDS complement(40347..42188) FT /transl_table=11 FT /gene="bapB" FT /locus_tag="BB3292" FT /product="autotransporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP1200" FT /db_xref="GOA:Q7WHB7" FT /db_xref="InterPro:IPR003991" FT /db_xref="UniProtKB/TrEMBL:Q7WHB7" FT /protein_id="CAE33784.1" FT /translation="MFIHRKSHRVRVGRRVHRAPASWRHCWRWRLAALAGSGAICAAPA FT WATGAGLDDLRQWLAPPSRKTPEVSPPGKQAAAAGMAGFGSLSAGGLDQWLAPSSRPAP FT VRPGSPSGSPAAPVSGASPGAPAMPSPDALPHTPPASGGDRVISGILQQDLGSWLAPDA FT AKRSPSEPGKAPEKIGVMPNEDLGKWLVPGAQKNNPPEPRKTLDEIRAGLEKWVAPGSK FT PPVEPDPDKATQEYRKDLDKWLAPPAKSGPPSAPPEAPPEAPPEAPPQAQPEAPPVVPP FT PAEPPAARPPAVPPARPAGDAVYLPGTRTLTPTANAAVGTASAAQGLWQAEMNALGKRM FT GELRLTPAAGGVWGRVFTQRQKLDNGVAREFRQTVSGFELGADTALAAAEGRWHVGAVA FT GYSQGSLKFRHGGTGDDDSVHVGAYATYIGNSGFYLDGIVRVSRFSHEFKVHDTQGRRV FT RGQYRGNGVGASLELGKRFTWPGAWYVEPQLEMAAFHAQGADYTASNGLRIKDDGTNSM FT LGRLGLHVGRQFDLGDGRVVQPYMKLSWLQEFDGKNTVRTNGVRHKSRLDGGRAELDLG FT VAAQLGKHGSLYGSYEYAKGSRQTMPWTFHVGYRYAW" FT misc_feature complement(40353..41183) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03797, DE Autotransporter FT beta-domain, score 3.2e-85" FT CDS complement(42505..45102) FT /transl_table=11 FT /gene="clpB" FT /gene_synonym="htpM" FT /locus_tag="BB3293" FT /product="ATP-dependent protease, ATPase subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP1198" FT /db_xref="GOA:Q7WHB6" FT /db_xref="InterPro:IPR004176" FT /db_xref="UniProtKB/Swiss-Prot:Q7WHB6" FT /protein_id="CAE33785.1" FT /translation="MRFDKLTTKFQQALADAQSLAARNDHPYIEPVHVLAALLGDPDSG FT AASLLARAGVAVNRVQPAIDSALKGLPQVQGEDNVQVGRELQSVLVRTDKEAARRGDTY FT IASELFLLALADDKGDAGRILREAGLQKKALEAAIDAVRGGENVSGAEGESNREALSKY FT TLDLTERARQGKLDPVIGRDDEIRRTIQILQRRTKNNPVLIGEPGVGKTAIVEGLAQRI FT VNDEVPETLRGKRVLSLDLAALLAGAKFRGEFEERLKAVLKELAQDDGQNIVFIDELHT FT MVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQKVLVGEP FT DVESTIAILRGLQERYELHHGVEITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAGAR FT IRMEIDSKPEVMDRLDRRIIQLKIEREAVKKETDDASMRRLAVIEEELEKLQREYNDYE FT EIWKAEKAAVQGTQAIKEEIDRVRAEMAELQRKGQFDKLAELQYGKLPELEARLKAADS FT AEREAGESDSGKPRLLRTQVGAEEIAEVVSRATGIPVAKMMQGERDKLLRMEDFLHKRV FT VGQDEAVRLVSDAIRRSRAGLADPSRPYGSFLFLGPTGVGKTELTRALADFLFDSEEHM FT IRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFN FT VLLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSQHIQSMAGKPYEVIKEVVWDELKHT FT FRPEFLNRIDEVVVFHGLEAQHIESIARIQLKRLGERLEKQEMRLDVSDAALAEIARSG FT FDPVFGARPLKRAIQQQIENPVAKLILEGVFGPRDVVPVDWQDGKFVFTRTLQ" FT misc_feature complement(43138..43194) FT /note="PS00871 Chaperonins clpA/B signature 2." FT misc_feature complement(43249..43272) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(43921..44505) FT /note="HMMPfam hit to PF00004, DE ATPase family associated FT with various cellular activities (AAA), score 1.6e-09" FT misc_feature complement(44188..44226) FT /note="PS00870 Chaperonins clpA/B signature 1." FT misc_feature complement(44467..44490) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(44671..44826) FT /note="HMMPfam hit to PF02861, DE Clp amino terminal FT domain, score 5.4e-13" FT misc_feature complement(44896..45054) FT /note="HMMPfam hit to PF02861, DE Clp amino terminal FT domain, score 9.9e-11" FT CDS 45425..46153 FT /transl_table=11 FT /gene="btr" FT /locus_tag="BB3294" FT /product="transcriptional regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1197" FT /db_xref="GOA:Q7WHB5" FT /db_xref="InterPro:IPR018335" FT /db_xref="UniProtKB/TrEMBL:Q7WHB5" FT /protein_id="CAE33786.1" FT /translation="MQRRVPLSPDAAHCSSCMLGHVCVPVGMPANEVEKLDELVKERVR FT VERGKSLYELDDPLDAVYGVRYGSLKTQLEDSSGQLQITGFHLPGEIVGLDGMIESKHV FT SSAVALEDSEVCVIRLPEIDRVSTQLPSLQQQFRRLMSREITRSHQMLATVGAMRSEQR FT LAAFLLNLSQRYAALGYSSTEFVLRMSREEIGNYLGLTLETVSRLFSRFGREGLIRINQ FT REVRLIDLPGLKQLIGQESC" FT misc_feature 45542..45820 FT /note="HMMPfam hit to PF00027, DE Cyclic nucleotide-binding FT domain, score 1.1e-09" FT misc_feature 45983..46078 FT /note="HMMPfam hit to PF00325, DE Bacterial regulatory FT proteins, crp family, score 7.4e-15" FT misc_feature 45989..46060 FT /note="PS00042 Bacterial regulatory proteins, crp family FT signature." FT CDS 46150..47304 FT /transl_table=11 FT /locus_tag="BB3295" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1196" FT /db_xref="UniProtKB/TrEMBL:Q7WHB4" FT /protein_id="CAE33787.1" FT /translation="MTGTPRAPMVSGLFRIGALLAAGLLCGGAWAQDAEADPYGDPIVA FT PRAAPPQWKPLKIGPPGHRYAFPLYSSKNLERDDLRGIRRLVIVLHGVKRNAASIHGTV FT TALFAANPERAEDTLVIAPKFASAIDAGFAAMPAWRRASWEDGELSMQARGRPAPVSSL FT QVLDDLLRELSDSSRLPALRTIVLAGHSGGAQLVQRYAVLNSLDETLRREGLTLQYVVA FT NPSSYLYLSPERPRADGKGHAPYERGICPTYNQYKYGLDHLPAYARGLDPASLPARYAQ FT RHVTYLLGSADNNPEHQLLDKSCGAEAQGATRLARGLGYWRYEAGVLAPRLPRSVAWHH FT DAQEVVDAGHDAAQMFSSSCGARALLGDRSAPLPDGPACLPARR" FT misc_feature 46150..46242 FT /note="Signal peptide predicted for BB3295 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 31 and 32" FT CDS complement(47341..47682) FT /transl_table=11 FT /locus_tag="BB3296" FT /product="ferredoxin" FT /note="ortholog of Bordetella pertussis (BX470248) BP1195" FT /db_xref="GOA:Q7WHB3" FT /db_xref="HSSP:1CZP" FT /db_xref="InterPro:IPR001041" FT /db_xref="UniProtKB/TrEMBL:Q7WHB3" FT /protein_id="CAE33788.1" FT /translation="MNPAGHEVEVRPQGWRFDARPGESLLRAAARAGIRLPSSCRNGTC FT RTCLCRLVAGEVAYLVEWPGVSADEKAQGWILPCVAQALGPVAIEAPQATPLPPKPPPS FT TLLTGARRA" FT misc_feature complement(47428..47661) FT /note="HMMPfam hit to PF00111, DE 2Fe-2S iron-sulfur FT cluster binding domain, score 2.7e-12" FT CDS complement(47679..48296) FT /transl_table=11 FT /locus_tag="BB3297" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1194" FT /db_xref="GOA:Q7WHB2" FT /db_xref="HSSP:1VIU" FT /db_xref="InterPro:IPR020084" FT /db_xref="UniProtKB/TrEMBL:Q7WHB2" FT /protein_id="CAE33789.1" FT /translation="MSAARMPANAMSADPSDSSHLVETLVSSETLCDGGFLKARRDTVR FT LPSGRTATREYIVHPGAVVVVPLLDDGRVLLERQFRYPIGQVMTEFPAGKLDPGEDPLA FT CARRELLEETGYTAGQWASAGALHLAIAYSTEIIHIFFARQLRAGTRQLDEDEFLDVHS FT ATVPELLQACREGRVTDAKTLTCVLWLQNVLAGDWPLDWQPA" FT misc_feature complement(47727..48122) FT /note="HMMPfam hit to PF00293, DE NUDIX domain, score FT 3.5e-23" FT misc_feature complement(47958..48017) FT /note="PS00893 mutT domain signature." FT CDS complement(48346..48564) FT /transl_table=11 FT /locus_tag="BB3298" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1193" FT /db_xref="UniProtKB/TrEMBL:Q7WHB1" FT /protein_id="CAE33790.1" FT /translation="MNPQLLALLVEREMPYGKYKGRLMADLPGHYLAWFARNGFPAGEI FT GRLLALMHELDHNGLRDLLKPLRGGRA" FT CDS complement(48589..48915) FT /transl_table=11 FT /locus_tag="BB3299" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1192" FT /db_xref="UniProtKB/TrEMBL:Q7WHB0" FT /protein_id="CAE33791.1" FT /translation="MKTTHRILAAGLLAALCAAASAAQAQAVQQQYQYPSAPSKDGSQS FT PPSTLRITETPGAAAVPIRDTPESVREYQRCREVSDRAAVSNEQMRAGVAQCLKELEAR FT RQAG" FT misc_feature complement(48841..48915) FT /note="Signal peptide predicted for BB3299 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.751 between residues 25 and 26" FT CDS complement(49060..49965) FT /transl_table=11 FT /locus_tag="BB3300" FT /product="putative RNA polymerase sigma factor" FT /note="ortholog of Bordetella pertussis (BX470248) BP1191" FT /db_xref="GOA:Q7WHA9" FT /db_xref="InterPro:IPR009959" FT /db_xref="UniProtKB/TrEMBL:Q7WHA9" FT /protein_id="CAE33792.1" FT /translation="MSKTAAITIDTPGADDFEPHRRHLYGLAYRMLGSWSEAEDIVQET FT WLRWREIDPATLDNARAFLSRIATRLCLDVLKSAHVRRQVYVGPWLPEPLPDAQAYAGA FT APGEIAHDVSVALMLALERLSASERAAFLLHDVFDVPFAEIAGTLGRTEAGCRQLAARA FT RNRVRESRPRFAVEESEGIRLARAFIDAAQHGDVDVLRQLLADDAVLHSDGGGKKLAFM FT RPILGRANIVRAFAGLARKGQSDLSSVRIVQLNGMPAIYGIERDGLPRTISLGVCGGRI FT VRVYIMRNPDKLAHLARFTG" FT misc_feature complement(49729..49890) FT /note="HMMPfam hit to PF00776, , score 3.4e-07" FT CDS complement(49958..50404) FT /transl_table=11 FT /locus_tag="BB3301" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1190" FT /db_xref="InterPro:IPR003779" FT /db_xref="UniProtKB/TrEMBL:Q7WHA8" FT /protein_id="CAE33793.1" FT /translation="MKPRMNPYTVAPRTMQALMALQSYVNDCGLEHSLLELVKMRASQI FT NGCAFCLNLHYTEARRQGESELRLQLLNAWRESPLYTARERAALAWTEALTLLAQTRAP FT DADYAELATHFDELERVNLTMAINTINAWNRIAVGFRSLHPVNE" FT CDS 50632..51060 FT /transl_table=11 FT /locus_tag="BB3302" FT /product="lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1189" FT /db_xref="InterPro:IPR007298" FT /db_xref="UniProtKB/TrEMBL:Q7WHA7" FT /protein_id="CAE33794.1" FT /translation="MKTLLPVLALAALLSACNANAPSDTPEGAPPPDTHTSRNSLDWQG FT TYQGVLPCADCPGIRTVLTLRADNTYQLQTQYLERQPRPDTVQGRFGWLTGDNAIELDS FT AGDHYRYQVGENRLTMMSQDGTLPSGPLAEHYVLKRSQ" FT misc_feature 50632..50694 FT /note="Signal peptide predicted for BB3302 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.653 between residues 21 and 22" FT misc_feature 50650..50682 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(51068..51286) FT /transl_table=11 FT /locus_tag="BB3303" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1188A" FT /db_xref="InterPro:IPR019180" FT /db_xref="UniProtKB/TrEMBL:Q7WHA6" FT /protein_id="CAE33795.1" FT /translation="MAYPRTMQRLPDQAVAGDPRPQPPEPPEPSDCCQSGCIPCVYDLY FT DEARERYQEALRAWRARHPEAAGGGDA" FT CDS complement(51298..52182) FT /transl_table=11 FT /locus_tag="BB3304" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1188" FT /db_xref="UniProtKB/TrEMBL:Q7WHA5" FT /protein_id="CAE33796.1" FT /translation="MQLTKNFVKAKNPCTAGYRWFLRDHNGHGEYQPVLDALVEAGRID FT DAMWLIDQFGPTDQVLNLDTLDAPALVFAGTVTVRRGITVDGVLRAGRNIVCGAGIRAG FT TLVQAGEGIDARGSIVCDGDVQAGGDIQTTWGVQVGKRLTVGGQLRAGWDIRTGGDLSV FT AGPIRAGDAVVSGGILKCEQGIRAGQDVQAEYDINVVSGIQAGGSILAGGHVETGWGMI FT AGHDIVADGAIRSGEGLEAGGRIEAGEGHGVYAGLRVRVDAWPDSARVAAARCLGPLLS FT GHWIGAAALDAQA" FT CDS 52876..53499 FT /transl_table=11 FT /locus_tag="BB3305" FT /product="putative aldolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1186" FT /db_xref="HSSP:1Q5X" FT /db_xref="InterPro:IPR005493" FT /db_xref="UniProtKB/TrEMBL:Q7WHA4" FT /protein_id="CAE33797.1" FT /translation="MLAGFAQIGTAQISDCMGRLYGVQGLRPLHAGAARIVGRAITVKT FT RPGDNLMIHKAISLAGPGDVIVVDGAGETANALVGELMMMDAQSRGVAAFVIDGAVRDL FT DVFQQGAFGCFARAVSHKGPYKDGPGEINVPVSIGGQVVAAGDVIVGDADGVVAVPLAQ FT AGAVLAAARRKEDAELAAKEKLRAGTYAKPWVDRIIAEKTGDAQ" FT misc_feature 52891..53349 FT /note="HMMPfam hit to PF03737, DE Dimethylmenaquinone FT methyltransferase, score 2.3e-30" FT CDS 53496..54698 FT /transl_table=11 FT /gene="aspC" FT /gene_synonym="aatA" FT /locus_tag="BB3306" FT /product="aspartate aminotransferase" FT /EC_number="2.6.1.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP1185" FT /db_xref="GOA:Q7WHA3" FT /db_xref="HSSP:1BKG" FT /db_xref="InterPro:IPR015421" FT /db_xref="UniProtKB/TrEMBL:Q7WHA3" FT /protein_id="CAE33798.1" FT /translation="MSIVADKIKRIKLSPSVATRAIVAQLREEGRRVIDLTVGEPDFST FT PAHICEAAIAAMQRGETKYPPAQGTMALRKAVRARLREETGVDYPEGHIIVGTGAKQVL FT YNGLAATLNEGDEVIIPAPYWVSYPDMVLVNGGVPVAVTATPATQYKLTPQALEAAITP FT RTKWLMMNAPSNPTGAIYTADEWRGLAEVLRRHPHVWLMTDDIYARLNFTATPTVHPLQ FT VAPELAERTLVVNGVSKAYAMTGWRIGYGAGPEALIKAMAILQSQSTSGACSISQAAAR FT EALAGPQDCVAEFARTFKARRDAAVAALQGAPGLSVVMPEGAFYVFPDCAGVLGKTTPD FT GRVLETDTDFVHYLLREAGVAVIDGTPYGVPGTFRLSFAAALEDIQQGCAAIRAACERL FT A" FT misc_feature 53730..54683 FT /note="HMMPfam hit to PF00155, DE Aminotransferase class I FT and II, score 2.9e-66" FT misc_feature 54201..54242 FT /note="PS00105 Aminotransferases class-I FT pyridoxal-phosphate attachment site." FT CDS 54764..55582 FT /transl_table=11 FT /locus_tag="BB3307" FT /product="probable solute-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1184" FT /db_xref="GOA:Q7WHA2" FT /db_xref="InterPro:IPR018313" FT /db_xref="UniProtKB/TrEMBL:Q7WHA2" FT /protein_id="CAE33799.1" FT /translation="MMKRNVLAVLTISLLGLAGPAHADQLDDIKARGELLCGTLGTSQP FT FSYQDAATRTVVGYDVDMCKLVADKLGVKVNYKLLSVAARVPELNESRVDILAANLGYS FT PERAEQIAFSHTYYVSPQKLLVRKDSNLQTIESVNGRRVAATKGSSSEREIKRILDKSQ FT VLGFTDSSASYLALQQKKVDAQFASELVLVRLMLQSPPTAPVSIIDKAVFDEPWGLGMR FT KSETRFIAKVNEILDQAEASGEAQRLFEKWFGAQTPYKLQRSFKIGPIAG" FT misc_feature 54764..54832 FT /note="Signal peptide predicted for BB3307 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 23 and 24" FT misc_feature 54866..55528 FT /note="HMMPfam hit to PF00497, DE Bacterial extracellular FT solute-binding proteins, family 3, score 2.6e-57" FT misc_feature 54935..54976 FT /note="PS01039 Bacterial extracellular solute-binding FT proteins, family 3 signature." FT CDS 55686..56375 FT /transl_table=11 FT /locus_tag="BB3308" FT /product="amino acids ABC transporter, permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1183" FT /db_xref="GOA:Q7WHA1" FT /db_xref="InterPro:IPR010065" FT /db_xref="UniProtKB/TrEMBL:Q7WHA1" FT /protein_id="CAE33800.1" FT /translation="MFFLDAHYLSQLADGMMTTVQLFLVAWVLAFTLAVLLVVIRTTNL FT APCRWFVDAYVEYHRNVPLLVQVLFWYFGMPELLPEGVRGWLYQHNAELSLAAIALGLG FT SAAYIAEDIRSGLRAIPGTQFEAARALGSSYLQCMRHVIVPQALRISIPPLVGRALLLF FT KNTSVAMAIGVVELTYQAREIENETYRTFATFGAATLMYLLGSFLLMFIGSRVYARYNI FT GSGGRRA" FT misc_feature join(55737..55805,56160..56228,56256..56324) FT /note="3 probable transmembrane helices predicted for FT BB3308 by TMHMM2.0 at aa 18-40, 159-181 and 191-213" FT misc_feature 56031..56243 FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 2.9e-09" FT misc_feature 56034..56120 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS 56368..57057 FT /transl_table=11 FT /locus_tag="BB3309" FT /product="amino acids ABC transporter, permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1182" FT /db_xref="GOA:Q7WHA0" FT /db_xref="InterPro:IPR010065" FT /db_xref="UniProtKB/TrEMBL:Q7WHA0" FT /protein_id="CAE33801.1" FT /translation="MLDILHDYWPMLLVGQYPNGPLGGLALTLILALLGLLLSMPLALL FT IAIARVSPFRGLRVASRLLVNTVRGMPLLMLIFWAYFAVPKLTGGSISGFWTLVTALVI FT YESAYLSEVIRSGIEAIPKGQIEASRSLGVGYWTTMRKVVLPQALFNVLPSMTSQFVST FT IKETSLGYVISVNELTFAANQVNNLVLTQPLQVFGILAIIYFLVCFSLSRSVAWLDSWV FT RRSRSMA" FT misc_feature join(56446..56514,56551..56619,56953..57021) FT /note="3 probable transmembrane helices predicted for FT BB3309 by TMHMM2.0 at aa 27-49, 62-84 and 196-218" FT misc_feature 56716..56928 FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 1e-15" FT misc_feature 56719..56805 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS 57077..57814 FT /transl_table=11 FT /gene="glnQ" FT /locus_tag="BB3310" FT /product="amino acids ABC transporter, ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1181" FT /db_xref="GOA:Q7WH99" FT /db_xref="HSSP:1B0U" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WH99" FT /protein_id="CAE33802.1" FT /translation="MIKLEGVNKWYGEHHVLKDVSLEVGRGEVLVVCGPSGSGKSTLIR FT TINRLEPIGKGVIRIDGQDIHAKGVNINTLRRGIGFVFQQFNLFPHMSVLDNVTYAPLH FT ILKTPRREAEALAHQLLERVGMAHKAQAYPGALSGGQQQRVAIARALALKPPIMLFDEP FT TSALDPEMVGEVLQVMKSLARDGMTMVCVTHEMGFAREVSDRVIFMDAGEILEIATPQR FT FFSAPEHPRAQRFLADIIGHHPA" FT misc_feature 57155..57712 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 2.6e-70" FT misc_feature 57176..57199 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 57485..57529 FT /note="PS00211 ABC transporters family signature." FT CDS 57888..58862 FT /transl_table=11 FT /locus_tag="BB3311" FT /product="LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1180" FT /db_xref="GOA:Q7WH98" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WH98" FT /protein_id="CAE33803.1" FT /translation="MVGLSDRQPAYSAMYTLKQLEAFYWSAVLGSFSASSRKLHTTQSA FT VAKRVGELEGFAGTPLFERRAKSLVLTQPGRKLFEGAREMLELNSRMVLDMADPSRFEG FT SVRLGVTELVALTSLAGVIERLNQRYPKIQLVPEIEAGITMYQQLERDELDLAIMPGPF FT WSYEYDCVQLGSVTNVWMASPALALDAARALTPHDLAPFPVISQPQNSALSHLYDAWFA FT QQGLSVKRVLTCNSLAMMAQLTMLGLGISHLPSAYFDPLVARGALCRLRVQPDLPTIHY FT YAVYKKSLINPVVSTVIDIARETCNFEVEGAFLPLPPGGLRSG" FT misc_feature 57936..58115 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 6.4e-14" FT misc_feature 57978..58070 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 58182..58805 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 5.6e-40" FT CDS 59208..60071 FT /transl_table=11 FT /locus_tag="BB3312" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1178" FT /db_xref="GOA:Q7WH97" FT /db_xref="InterPro:IPR000620" FT /db_xref="UniProtKB/TrEMBL:Q7WH97" FT /protein_id="CAE33804.1" FT /translation="MPFNQTVWAARGSTALFVLLWSSGAIFAKWGLDYASPFAFLVLRF FT ALALAVLTALGLRTGRCLPAPGTRLRTAATGALLLGGYSICYLLALQHGVTPGVLATVL FT GVQPLLTLLWLERDLPARRLAGLTLALAGLVLVVWRNIDVARLDHAGMAYALAALGCMT FT AGALLQKGSRQAPGAVLPLQYATSLALCLALAPGQPWQVQWSPGFVAAWLWLALVISVA FT ATLLLYRLIQGGNLVNVTSLFYLVPPGTALLDYLLLGNRPAPASLAGMAAIVAGLGLVF FT GRRRAH" FT misc_feature 59208..59291 FT /note="Signal peptide predicted for BB3312 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.926) with cleavage site FT probability 0.882 between residues 28 and 29" FT misc_feature join(59226..59291,59319..59387,59424..59492,59502..59555, FT 59574..59627,59655..59711,59730..59798,59826..59894, FT 59913..59981,59994..60053) FT /note="10 probable transmembrane helices predicted for FT BB3312 by TMHMM2.0 at aa 7-28, 38-60, 73-95, 99-116, FT 123-140, 150-168, 175-197, 207-229, 236-258 and 263-282" FT misc_feature 59262..59624 FT /note="HMMPfam hit to PF00892, DE Integral membrane protein FT DUF6, score 9.2e-06" FT misc_feature 59685..60053 FT /note="HMMPfam hit to PF00892, DE Integral membrane protein FT DUF6, score 8.3e-07" FT CDS complement(60320..60730) FT /transl_table=11 FT /locus_tag="BB3313" FT /product="putative dioxygenase" FT /db_xref="GOA:Q7WH96" FT /db_xref="InterPro:IPR004360" FT /db_xref="UniProtKB/TrEMBL:Q7WH96" FT /protein_id="CAE33805.1" FT /translation="MFRIKGLDHIVLRVRDVARMRAFYVDVLGCTGEREQAELGLTQLR FT AGSALIDLVALDGKLGRAGGAGPGAQGRNVDHFCLAVEPFDTDAIVAYLRGHGVDVGET FT GMRYGAGGEGPSVYLSDPEGNTVELKGPPTAA" FT misc_feature complement(60326..60694) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00903, DE Glyoxalase/Bleomycin FT resistance protein/Dioxygenase superfamily, score 8.2e-06" FT CDS 60905..61117 FT /transl_table=11 FT /locus_tag="BB3314" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR007420" FT /db_xref="UniProtKB/TrEMBL:Q7WH95" FT /protein_id="CAE33806.1" FT /translation="MFPEYRDLISRLKNDDPHFSRLYDKHNNLDQHIQDIEAGRATGTS FT LDIEKLKKEKLHLKDQIYAILKNGA" FT CDS complement(61216..62502) FT /transl_table=11 FT /locus_tag="BB3315" FT /product="putative transport protein" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7WH94" FT /protein_id="CAE33807.1" FT /translation="MPPPSAVAATPPTTHAGADPGQPYLRRGTAELHRAQWALFAAGFA FT TFSLLYCVQPLMPLFSQAFAVSPVQSSLSLSLSTVFLALAIFLVGLWAQALPRKAVMAV FT SLFAAATLGTVAAFAPDWHTLLVLRALQGAAMGGVPAVAMAYLAEEVEPDTLGFVMGLY FT ISGSAFGGLTGRVITGFVSDYLGWRAALGALGALGLLAAVLFVWLLPASRRFVPRRGNG FT WRDARAGLAAHLRHGRLVALFALAGLQAGAFVTVYNYVGYRLLLPPFSLSQTFIGAIFV FT VYLVGIVASTLFGRLADRHGRGAMLCTATSIAMAGLLLTLSDALSVLVAGIVVFTFGFF FT AAHAVASGWVGQMARGYKAQAASLYLLAYYLSASVLGSVGGGSWSHGGWAGVVALAGAL FT LAGAVGLSAWLYRGNPARGAAAAVRPPAA" FT misc_feature complement(join(61270..61338,61351..61419,61456..61524, FT 61537..61605,61624..61692,61720..61788,61876..61944, FT 61972..62040,62059..62127,62137..62205,62224..62283, FT 62326..62394)) FT /note="12 probable transmembrane helices predicted for FT BB3315 by TMHMM2.0 at aa 37-59, 74-93, 100-122, 126-148, FT 155-177, 187-209, 239-261, 271-293, 300-322, 327-349, FT 362-384 and 389-411" FT misc_feature complement(61270..62400) FT /note="HMMPfam hit to PF00083, DE Sugar (and other) FT transporter, score 0.0021" FT CDS 62612..63502 FT /transl_table=11 FT /locus_tag="BB3316" FT /product="probable LysR-family transcriptional regulator" FT /db_xref="GOA:Q7WH93" FT /db_xref="HSSP:1IXC" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WH93" FT /protein_id="CAE33808.1" FT /translation="MELRHLRYFVAVAEDLHFTRAAARLGIGQPPLSLQIQQLEREIGT FT PLLLRQPRGVALTEAGARFLQDARAVLHAAELAVETARRLGHGEQGDIAVGFTASAVFH FT PYLPSAIRAYRDRYPGVRIALSESNTRALLAGLRSGEVDVAFVRPPYALDDEFASERVL FT DEPMLVALPPDHPLCRKRTVPVAALAEQDFVLYPRPIGAGLYDAIMQACQRAGFTPRVI FT QEAPQMASIISLVAAGVGIAVVPAAMRHMGAAGIVYRPIRGDAPRALLDMAYRRQPRSA FT AVRHAVELLRGRAHP" FT misc_feature 62618..62797 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2.3e-27" FT misc_feature 62867..63496 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 1.9e-51" FT CDS 63625..65700 FT /transl_table=11 FT /locus_tag="BB3317" FT /product="probable signalling protein" FT /db_xref="InterPro:IPR001633" FT /db_xref="UniProtKB/TrEMBL:Q7WH92" FT /protein_id="CAE33809.1" FT /translation="MLVGNYDATLVLTSLFVAILASYTALGMAGRVAASRGVAARVWLG FT GGAFAMGLGIWSMHFIGMLAFSLPIPLGYDVALTVASMALAVACSAFALWVVTRATLPW FT RRLASAAALMGTGIAAMHYTGMAAMRMHPAIEYSPALFMLSVAVAIVASGAALWITHAL FT RHNRPGAPAYRICAAIVMGLAIVGMHYTGMAAANFPQGSVCMAANSGISAGWLAVSTAA FT VTLAVLAVALVVAVLDTRLETRTSALNASLAQANEELVQMALHDTLTKLPNRALLDERL FT KQAIIRATAAGRGFSLLFIDLDGFKAINDAYGHGAGDLLLVEMAQRIKRAMRPQDCVAR FT LGGDEFVVLADLPDPNDAAGLAERLIDTLTVPAEVQGHEVSVAASIGIALFPGDGADAS FT TLLAHADAAMYHAKRLSQTHRVSFFEPSMNEDALEQLQLLQDLRLALPRNQLELHYQPK FT FVAPAGPVVGAEALLRWNHPTRGVIGPTVFIPIAERTGLIFSIGAWVLDEACRQMRQWR FT DMGHADWTVAVNLSSLQFSQPDLIDSIRATLARHGLPPRCLAIEITESTAMRDAEASLA FT VLRELAELGVSISIDDFGTGYSSLLYLKRLPATELKIDRGFVNQLEHDNEDAAIVSAII FT ALGQKLNLKIVAEGVETLAQQSFLTEMGCDSLQGFLLGRPLPAAEFLAHTLQPQPA" FT misc_feature 63625..63723 FT /note="Signal peptide predicted for BB3317 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.660) with cleavage site FT probability 0.228 between residues 33 and 34" FT misc_feature join(63652..63720,63739..63807,63850..63918,63943..64011, FT 64039..64107,64141..64209,64267..64335) FT /note="7 probable transmembrane helices predicted for FT BB3317 by TMHMM2.0 at aa 10-32, 39-61, 76-98, 107-129, FT 139-161, 173-195 and 215-237" FT misc_feature 63775..63963 FT /note="HMMPfam hit to PF03707, DE Bacterial signalling FT protein N terminal repeat, score 1.7e-21" FT misc_feature 63964..64158 FT /note="HMMPfam hit to PF03707, DE Bacterial signalling FT protein N terminal repeat, score 1.6e-15" FT misc_feature 64165..64368 FT /note="HMMPfam hit to PF03707, DE Bacterial signalling FT protein N terminal repeat, score 1.2e-07" FT misc_feature 64399..64881 FT /note="HMMPfam hit to PF00990, DE GGDEF domain, score FT 7.4e-59" FT misc_feature 64924..65664 FT /note="HMMPfam hit to PF00563, DE EAL domain, score FT 3.2e-125" FT CDS 65801..66883 FT /transl_table=11 FT /locus_tag="BB3318" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2180" FT /db_xref="InterPro:IPR002549" FT /db_xref="UniProtKB/TrEMBL:Q7WH91" FT /protein_id="CAE33810.1" FT /translation="MQTESNPLAERFIARNLLDLAIRITLIGGLTVWCYRVAEPFIGML FT LWSIILAVTLAPLHMRLTRLLGARPRLAAVVLTLATMLVLLVPGAMLTASLGDSLVNIF FT HHSTGRIVRIPAPPDFVIELPLIGVRLHEIWLQAMTNLQDVLKPLQPHLATAGRWLLAG FT MASAGLGIAVFLASIAIAGVILVYADPAKRAAHAIGVRIAGPEQGVALAQLTAATIRAV FT AQGVIGVALIQAVLAGLGFLLAGVPAAGLWAIVALLICIVQLPLFLLMVPMVVYVFLNN FT TPTVAAVFAVWCLLVSLCDNVLKPLMLARGVDIPIPVILIGALGGVLAAGIVGLFLGSV FT GFGLGYVLFMQWVRQQSPAG" FT misc_feature join(65837..65905,65918..65977,66014..66082,66293..66361, FT 66464..66532,66542..66610,66629..66697,66740..66844) FT /note="8 probable transmembrane helices predicted for FT BB3318 by TMHMM2.0 at aa 13-35, 40-59, 72-94, 165-187, FT 222-244, 248-270, 277-299 and 314-348" FT misc_feature 65852..66859 FT /note="HMMPfam hit to PF01594, DE Domain of unknown FT function DUF20, score 8.3e-08" FT CDS complement(66899..67660) FT /transl_table=11 FT /locus_tag="BB3319" FT /product="putative ABC transporter inner membrane subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP2179" FT /db_xref="GOA:Q7WH90" FT /db_xref="InterPro:IPR013526" FT /db_xref="UniProtKB/TrEMBL:Q7WH90" FT /protein_id="CAE33811.1" FT /translation="MNWYAIKAIYKFEMARAWRTLMQSVASPVISTSLYFVVFGAAIGS FT HMVEIDGVSYGAFIVPGMIMLSLLTQSVANASFGIYMPRFSGTIYEIHSAPISYVEIVL FT GYVGAAASKSILLGLIMLATARLFVPFHIDHPVWMLAFLVLTAVTFSLFGFIIGIWADG FT FEKLQIIPLMIITPLTFLGGTFYSIKMLPPFWQTVTLFNPVVYLVSGFRWAFYGSADVS FT LGVSLGMTLAFLLVCLLTVRWIFRTGYRLKT" FT misc_feature complement(66911..67630) FT /note="HMMPfam hit to PF01061, DE ABC-2 type transporter, FT score 0.0051" FT misc_feature complement(join(66926..66994,67013..67081,67094..67162, FT 67181..67249,67292..67360,67421..67489,67532..67600)) FT /note="7 probable transmembrane helices predicted for FT BB3319 by TMHMM2.0 at aa 21-43, 58-80, 101-123, 138-160, FT 167-189, 194-216 and 223-245" FT CDS complement(67657..68580) FT /transl_table=11 FT /locus_tag="BB3320" FT /product="putative ABC transporter, ATP-binding subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP2178" FT /db_xref="GOA:Q7WH89" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WH89" FT /protein_id="CAE33812.1" FT /translation="MQAVISVQGLSKTYASGHPALKNINLDIHRGEIFALLGPNGAGKT FT TLISIICGIVNPGSGRVLADGHDIVREFRAARDAIGLVPQELTTDAFETVWNTVSFSRG FT LFGKPADPALIERILRDLSLWDKKDSRIMALSGGMKRRVMIAKALSHEPRILFLDEPTA FT GVDVELRHGMWQMVRRLRENGVTIILTTHYIEEAQEMADRIGVIRKGEIILVEDKHALM FT SKLGKKQLVIMLDAPLAALPALAGDYQLELAAEGTQLVYTYDNQVSGGIAALLRELDAR FT GIGFHDLQSSESSLEDIFVSLVSAQT" FT misc_feature complement(67951..68490) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 4e-56" FT misc_feature complement(68134..68178) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(68446..68469) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(68679..69203) FT /transl_table=11 FT /locus_tag="BB3321" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2177" FT /db_xref="GOA:Q7WH88" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:Q7WH88" FT /protein_id="CAE33813.1" FT /translation="MAGAAGGPMLIRSETPADQRAIFDVTQAAFRGHPHSEQTEAYIVQ FT ALRAAGALTLSLVAELDARVVGHAAFSPVQISDGSPSWFGLGPVSVDPAHQGRGIGTAL FT IEHGLARLQARGAAGCVLVGEPAYYGRFGFRPEPGLVLPDMPPTHFLALTFGAPARGTV FT TYHPGFAARDA" FT misc_feature complement(68799..69035) FT /note="HMMPfam hit to PF00583, DE Acetyltransferase (GNAT) FT family, score 1.6e-14" FT CDS complement(69212..69955) FT /transl_table=11 FT /locus_tag="BB3322" FT /product="putative inner membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2176" FT /db_xref="GOA:Q7WH87" FT /db_xref="InterPro:IPR018130" FT /db_xref="UniProtKB/TrEMBL:Q7WH87" FT /protein_id="CAE33814.1" FT /translation="MDALHVVVVAGAVLAGFVQGLSGFGYGLTAMSVWAWSIDPRLAAA FT LVVFGSLTGQLIAAFSVRRGFDWRRLLPFLLGGLVGIPIGVRILPMLDVHMFKALLGGF FT LVLWCPLMLAVKYLPRITAGGRLADAVVGGLGGVMGGIGGFTGTLPTLWCTLRGFARDE FT QRSIIQNFNLGTLLVTMATYVGTGIVTADMLPLFGLVALAMLIPTVLGTRLYLGISDQA FT FRRIVLGLLTLSGVAMLASSLPRLL" FT misc_feature complement(join(69227..69280,69308..69376,69389..69457, FT 69500..69568,69602..69661,69689..69745,69764..69832, FT 69875..69943)) FT /note="8 probable transmembrane helices predicted for FT BB3322 by TMHMM2.0 at aa 5-27, 42-64, 71-89, 99-118, FT 130-152, 167-189, 194-216 and 226-243" FT misc_feature complement(69305..69340) FT /note="PS00962 Ribosomal protein S2 signature 1." FT misc_feature complement(69851..69955) FT /note="Signal peptide predicted for BB3322 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.615) with cleavage site FT probability 0.450 between residues 35 and 36" FT CDS complement(70051..70290) FT /transl_table=11 FT /locus_tag="BB3323" FT /product="putative inner membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2175" FT /db_xref="UniProtKB/TrEMBL:Q7WH86" FT /protein_id="CAE33815.1" FT /translation="MRWRSLMWILWPSFLAAGVGSALIFALIDPLDVAIFGQVPTSRTG FT FYTVSFFVLWLVTALSSTVTAYLMPPGDQDEAPF" FT misc_feature complement(join(70093..70161,70204..70272)) FT /note="2 probable transmembrane helices predicted for FT BB3323 by TMHMM2.0 at aa 7-29 and 44-66" FT misc_feature complement(70213..70290) FT /note="Signal peptide predicted for BB3323 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.982) with cleavage site FT probability 0.623 between residues 26 and 27" FT CDS complement(70304..70513) FT /transl_table=11 FT /locus_tag="BB3324" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2174" FT /db_xref="UniProtKB/TrEMBL:Q7WH85" FT /protein_id="CAE33816.1" FT /translation="MTDTPAARPWYREPWPWILMAGPLVAIIGCVITIYLAMTRYGDQP FT IAEGAVKRGLVVERVAAPAADARR" FT misc_feature complement(70403..70471) FT /note="1 probable transmembrane helix predicted for BB3324 FT by TMHMM2.0 at aa 15-37" FT misc_feature complement(70424..70456) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(70542..72032) FT /transl_table=11 FT /locus_tag="BB3325" FT /product="putative ferredoxin" FT /note="ortholog of Bordetella pertussis (BX470248) BP2173" FT /db_xref="GOA:Q7WH84" FT /db_xref="InterPro:IPR017900" FT /db_xref="UniProtKB/TrEMBL:Q7WH84" FT /protein_id="CAE33817.1" FT /translation="MTQGTPAAPGGPSDPQPPAWRPAPGPRRADGETLEQTLADVRSKI FT YPRSVSGIFARWRVVFVVLTQLIFYGLPWLQWNGRQAVLFDLGARKFYLFGLVLWPQDV FT VYLAVLLVISALALFLFTAVAGRLFCGYACPQTVYTEIFMWIERRVEGDRIARIRLDEA FT PWSARKLRIKATKHALWLAVAWWTGSTFIGYFAPIRELGHQLFALQLGAWQWFWMLFYG FT FATWGNAGFMRESVCKYMCPYARFQSVMVDHDTFVVTYDKRRGEPRGGRSRKIDHKAAG FT LGDCVDCSLCVQVCPTGIDIRDGLQYMCIGCGACIDVCGQVMDKMRYAPGLIRYTSERA FT VDEGLDGRRARSHLLRPRVLIYGGLILALAIAFVVSLGMRNPLRVDVIRDRGTLGREVA FT GGLVENVYRLQIINTSDQPLRLQLTAEGIDGLAVLAGRDGSDVVEVEAAANKLVPVVLR FT APRGDTAPGAHAIVVQARSQDTGRVLEVREPASFYLPE" FT misc_feature complement(join(70899..70958,71337..71396,71439..71498, FT 71655..71723,71805..71873)) FT /note="5 probable transmembrane helices predicted for FT BB3325 by TMHMM2.0 at aa 54-76, 104-126, 179-198, 213-232 FT and 359-378" FT misc_feature complement(71073..71108) FT /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding FT region signature." FT misc_feature complement(71130..71201) FT /note="HMMPfam hit to PF00037, DE 4Fe-4S binding domain, FT score 0.045" FT misc_feature complement(71145..71180) FT /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding FT region signature." FT CDS complement(72124..73062) FT /transl_table=11 FT /locus_tag="BB3326" FT /product="putative cytochrome C oxidase subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP2172" FT /db_xref="GOA:Q7WH83" FT /db_xref="InterPro:IPR004678" FT /db_xref="UniProtKB/TrEMBL:Q7WH83" FT /protein_id="CAE33818.1" FT /translation="MSDFVNGFWSYFIGIIAIGGIVWCVWLLYSQRRWLSTRPAGGVVE FT DTGHVWDGDLTELNNPVPRWWTWMYLLTCVFALGYLVLFPGVGSYQGTLGYTSVGEVKQ FT KQAELAERVKPVYERFGGMTPEQLVADAPAREIGQRLFLNTCAQCHGSDAKGSTSFPNL FT TDGDWLYGGTPEIIAETIAKGRHGVMPPWKGVIDPRMAGDIAHYVRSLSGLAVDPVRVF FT RGKREFANYCVACHGVDAKGNQALGAPNLTDDVWLYGSSEASIVRTILDGRDNRMPAHE FT EVLTPEQIKLLSAWVWGLSNQAPAKAAEAAR" FT misc_feature complement(72163..72417) FT /note="HMMPfam hit to PF00034, DE Cytochrome c, score FT 0.0066" FT misc_feature complement(72352..72369) FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature complement(72427..72675) FT /note="HMMPfam hit to PF00034, DE Cytochrome c, score FT 0.0013" FT misc_feature complement(72610..72627) FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature complement(join(72802..72870,72976..73044)) FT /note="2 probable transmembrane helices predicted for FT BB3326 by TMHMM2.0 at aa 7-29 and 65-87" FT CDS complement(73059..73235) FT /transl_table=11 FT /locus_tag="BB3327" FT /product="cytochrome C oxidase subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP2171" FT /db_xref="UniProtKB/TrEMBL:Q7WH82" FT /protein_id="CAE33819.1" FT /translation="MMGYLSALITVLSMGTFLGIVWWAWSSHRQSANRESALLPFALPD FT EDGHAQQDGAMQP" FT misc_feature complement(73149..73235) FT /note="Signal peptide predicted for BB3327 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.767) with cleavage site FT probability 0.380 between residues 29 and 30" FT misc_feature complement(73158..73226) FT /note="1 probable transmembrane helix predicted for BB3327 FT by TMHMM2.0 at aa 4-26" FT CDS complement(73238..73900) FT /transl_table=11 FT /locus_tag="BB3328" FT /product="probable cytochrome C oxidase subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP2170" FT /db_xref="GOA:Q7WH81" FT /db_xref="InterPro:IPR003468" FT /db_xref="UniProtKB/TrEMBL:Q7WH81" FT /protein_id="CAE33820.1" FT /translation="MAQKQHGFFSHQTLEKNIGLMIIASILVVSVAGLVQIIPLFFQHS FT TTQAMPGVEPYEPLQLMGRDVYIREGCVGCHSQQVRTLQAEVQRYGPYSVAGESVFDHP FT FLWGSKRTGPDLARVGERYSDEWHRIHLRDPRAVVPESNMPAYPWLQHADLTGQNVAQR FT MQALRRLGVPYTDEAIAAAPAAIAGKTEEDALVAYLQALGVGARRGAASEPQRAAGG" FT misc_feature complement(73256..73870) FT /note="HMMPfam hit to PF02433, DE Cytochrome C oxidase, FT mono-heme subunit/FixO, score 6e-94" FT misc_feature complement(73670..73687) FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature complement(73775..73843) FT /note="1 probable transmembrane helix predicted for BB3328 FT by TMHMM2.0 at aa 20-42" FT CDS complement(73911..75398) FT /transl_table=11 FT /locus_tag="BB3329" FT /product="probable cytochrome C oxidase subunit" FT /EC_number="1.9.3.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP2169" FT /db_xref="GOA:Q7WH80" FT /db_xref="InterPro:IPR004677" FT /db_xref="UniProtKB/TrEMBL:Q7WH80" FT /protein_id="CAE33821.1" FT /translation="MNDCSAIASKAETFNYKVVRQFAIMTVVWGIVGMAVGVLIAAQLI FT WPQLNFDTAWLSYGRLRPLHTNAVIFAFGGSALFATSYYVVQRTCQARLFCDKLAAFTF FT WGWQAVIVAAAITLPMGFTSSKEYAELEWPIDILITLVWVAYAVVFFGTIVKRRSRHIY FT VANWFFGSYILTIAILHIFNNIEMPVTLWKSYSAYAGVQDAMVQWWYGHNAVGFFLTTS FT FLGMMYYFVPKQAGRPIYSYRLSIVHFWALAFTYMWAGPHHLLYTSLPDWTQSLGMTFS FT LILLAPSWGGMINGIMTLQGAWHKLRTDPILKFLVTALSFYGMSTFEGSMMSIRTVNSL FT SHYTDWTIGHVHSGALGWVAMITFGSLYYLIPRLYGRQQMHSVRAMELHFWVATIGVVL FT YIAAMWIAGVQQGLMWRDTAADGTLVYSFVEELKTRVPYYVIRLAGGILYLSGVFVMAW FT NVWMTVRGARAVNPAIPLENDNRATAPAGVPAAVPAV" FT misc_feature complement(join(74016..74084,74172..74231,74289..74357, FT 74400..74468,74505..74573,74601..74669,74706..74774, FT 74847..74915,74934..75002,75045..75104,75141..75209, FT 75252..75320)) FT /note="12 probable transmembrane helices predicted for FT BB3329 by TMHMM2.0 at aa 27-49, 64-86, 99-118, 133-155, FT 162-184, 209-231, 244-266, 276-298, 311-333, 348-370, FT 390-409 and 439-461" FT misc_feature complement(74088..75398) FT /note="HMMPfam hit to PF00115, DE Cytochrome C and Quinol FT oxidase polypeptide I, score 3.8e-71" FT misc_feature complement(74610..74777) FT /note="PS00077 Heme-copper oxidase catalytic subunit, FT copper B binding region signature." FT CDS complement(75523..75666) FT /transl_table=11 FT /locus_tag="BB3330" FT /product="putative outer membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2168" FT /db_xref="InterPro:IPR004714" FT /db_xref="UniProtKB/TrEMBL:Q7WH79" FT /protein_id="CAE33822.1" FT /translation="MSILYLLLPLSLAFVLAIGVALWWAVFSGQYDDTEDQGAAILRDN FT DN" FT misc_feature complement(75529..75666) FT /note="HMMPfam hit to PF03597, DE Cytochrome oxidase FT maturation protein cbb3-type, score 3.1e-10" FT misc_feature complement(75583..75666) FT /note="Signal peptide predicted for BB3330 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.973) with cleavage site FT probability 0.394 between residues 28 and 29" FT misc_feature complement(75586..75654) FT /note="1 probable transmembrane helix predicted for BB3330 FT by TMHMM2.0 at aa 5-27" FT CDS complement(75663..76637) FT /transl_table=11 FT /locus_tag="BB3331" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2167" FT /db_xref="GOA:Q7WH78" FT /db_xref="InterPro:IPR008250" FT /db_xref="UniProtKB/TrEMBL:Q7WH78" FT /protein_id="CAE33823.1" FT /translation="MRPTSILAVPADLPGADRQARRHALVRLGVAWLAMMQVMMFAWPG FT YVRNDGIPADALATLDWAIVLMNWAALLMTVPVVLYCAWPIWRGAASGLRRGRAGMDAP FT VALGIVAAFVPSVHATWTGRGEVYFDSVTMFVAFLLTARYLELCARQACGACALATPLV FT RRLHQAGGELGAAADRLATRFVFVQVALALAAGAAWTQIDAAHAVPVMVALLVMSCPCA FT MSMAVPSAMACAHSALLARPEATAAQGDALLAAAARVARQNLYGSLAWHLLMTPLALAG FT WVAPWLAAITMLLSSLAVAGNAWRLRRHRWDAAPAAAVAQPAP" FT misc_feature complement(join(75738..75806,75954..76022,76041..76100, FT 76272..76325,76386..76454,76497..76565)) FT /note="6 probable transmembrane helices predicted for FT BB3331 by TMHMM2.0 at aa 25-47, 62-84, 105-122, 180-199, FT 206-228 and 278-300" FT CDS complement(76702..77976) FT /transl_table=11 FT /gene="bioA" FT /locus_tag="BB3332" FT /product="adenosylmethionine-8-amino-7-oxononanoate FT aminotransferase" FT /EC_number="2.6.1.62" FT /note="ortholog of Bordetella pertussis (BX470248) BP2165" FT /db_xref="GOA:Q7WH77" FT /db_xref="HSSP:1DTY" FT /db_xref="InterPro:IPR005815" FT /db_xref="UniProtKB/TrEMBL:Q7WH77" FT /protein_id="CAE33824.1" FT /translation="MSDTTPAWMAQGYPHIWLPYAQMKTAAPPLPVVRSHGSLLELADG FT RTLIDGVASWWTACHGYNHPHIAQAVREQLDRMPHVMFGGLAHEPALNLASRLSALLGP FT GLERVFYTDSGSVAVEVAMKMAVQFWLNQGERGRTRFVAFRGGYHGDTFGTMAVCDPDE FT GMHAMFRGLLPEHDVLALPRDEAALAALQAHLERHAGRIAGMLVEPLVQGAGGMLLHDP FT QVLARLRELADRYGILLIFDEIFTGFGRTGTMFAFEQAGVRPDIVTLSKALTGGTLPLA FT ATVASARVFEGFWSDDPGHALMHGPTFMGCALACAAANASLDLFEREPRLRQVAALEQA FT LRAGLEPCRDLPWVRDVRVLGAIGVIELDGIGARDDLRRRLVDAGVWVRPFGNIVYLTP FT AFTIAEDELQALLAAVRQVVAERRP" FT misc_feature complement(76708..77916) FT /note="HMMPfam hit to PF00202, DE Aminotransferase FT class-III, score 1.8e-144" FT misc_feature complement(77149..77262) FT /note="PS00600 Aminotransferases class-III FT pyridoxal-phosphate attachment site." FT CDS 78074..79273 FT /transl_table=11 FT /locus_tag="BB3333" FT /product="putative 8-amino-7-oxononanoate synthase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2164" FT /db_xref="GOA:Q7WH76" FT /db_xref="HSSP:1BS0" FT /db_xref="InterPro:IPR015421" FT /db_xref="UniProtKB/Swiss-Prot:Q7WH76" FT /protein_id="CAE33825.1" FT /translation="MSMSKLDSLFTAALEQAAQRQVRRRLRRATAAPPGRLALDGRTLV FT NFSSNDYLGLARHPLLAERASLWATRHGAGAQASRLVCGNLDLHEQVEAKLARLKGTEA FT ALLLASGWQANAAVLPALFKAAAAQGEPQVYTDRLNHASLHHGCQAAGVRQIRFRHNDL FT AHLEHLLAERAGAPGARFIVTESVFSMDGDRADVPALAALAARHHAFLYLDEAHATGVL FT GPRGMGLAGLAPGGVDLAMGTFSKGLGSFGAYVAGSRALCDYLVNACSGFIYTTALPPA FT VLGAIDAALDLVPRLDQARAALLGHGERLRASLAAQGIDCGASSTQIVPAIVGDAGHAL FT ALAAELERRGLLAVAIRPPTVPAGTSRLRIALSAAHGEAELDQLIEALAAGWRAVRQAA FT " FT misc_feature 78293..79240 FT /note="HMMPfam hit to PF00155, DE Aminotransferase class I FT and II, score 8.2e-32" FT misc_feature 78800..78829 FT /note="PS00599 Aminotransferases class-II FT pyridoxal-phosphate attachment site." FT CDS 79270..79923 FT /transl_table=11 FT /locus_tag="BB3334" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2163" FT /db_xref="UniProtKB/TrEMBL:Q7WH75" FT /protein_id="CAE33826.1" FT /translation="MSAPRPLLRFEHGWAHDAGVWAPLRAALADWPQQAADAGYFGPAV FT EPPPDGAPVVAIGHSLGFLKILQSPAPGCIAYIAINGFARFAGGADYPPGVAPRLLERM FT LARLELDPAAVVDDFRRRAGSAPHPGTPRPEPLRHDLRRLREADERQTLAASRLPLLAL FT AGTADPIVAPALTRAQFGACAGLRWRDGGGHLLPTSDPDWCAGRIRAFLAGLPA" FT CDS 79920..81356 FT /transl_table=11 FT /locus_tag="BB3335" FT /product="putative biotin synthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2162" FT /db_xref="GOA:Q7WH74" FT /db_xref="HSSP:1DAI" FT /db_xref="InterPro:IPR013217" FT /db_xref="UniProtKB/TrEMBL:Q7WH74" FT /protein_id="CAE33827.1" FT /translation="MSTRSTPTISQRFDRAAARYETHAEVQRHAAEQLAERIAALPLPA FT EPRILEIGCGTGLLTRALARRLGRADWTITDIAPAMLAAQQAGPPPAGRVRHQLVDGEH FT PAGLPGGYDLICSSLAVQWFGDLDAGLARLAGLLAPGGLLAIATLAEHTFSEWRAAHQA FT HGLHAATPAYPPAERIGRTLAGLRGGITREAYRQRHPDALHFVRSLKAIGASAPAAGHA FT PLSPAAFRRVLAQFDRQGNHVTYDLAYGLWRKQAPGVFVTGTDTGVGKTLASAILARAW FT RAHYWKPLQTGVAEEPGDTETVAALAGLEPARLHPPAHVLQAPLSPWAAAPLEGVTLDA FT AAIAPPQVDGPLVVEGAGGLYVPIDERHMMIDLIARLGMPVVLAARSGLGTINHTLLSL FT HALRERRLPVLGVIMLGEPSAGNRHAIEHFGGVPVLAQIPRLARVDAEAVEAWAARIPP FT LADCLARRWPDTQETPACRP" FT misc_feature 80691..81260 FT /note="HMMPfam hit to PF01656, DE Cobyrinic acid FT a,c-diamide synthase, score 0.0072" FT CDS 81344..81703 FT /transl_table=11 FT /locus_tag="BB3336" FT /product="putative integral membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2161" FT /db_xref="GOA:Q7WH73" FT /db_xref="InterPro:IPR005538" FT /db_xref="UniProtKB/TrEMBL:Q7WH73" FT /protein_id="CAE33828.1" FT /translation="MQALTGFTWLLALQALGEACSRLLHFPIPGPVTGMLLLLVALRWP FT LVREPVALAAQFLLSHLSLLFVPVGVGVMTHIALLAEYGLRMAAVIALSTLAGMAATYW FT ALRVGRSAAPETDDA" FT misc_feature 81350..81676 FT /note="HMMPfam hit to PF03788, DE LrgA family, score FT 3.8e-18" FT misc_feature join(81410..81478,81512..81580,81593..81661) FT /note="3 probable transmembrane helices predicted for FT BB3336 by TMHMM2.0 at aa 23-45, 57-79 and 84-106" FT CDS 81696..82439 FT /transl_table=11 FT /locus_tag="BB3337" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2160" FT /db_xref="GOA:Q7WH72" FT /db_xref="InterPro:IPR007300" FT /db_xref="UniProtKB/TrEMBL:Q7WH72" FT /protein_id="CAE33829.1" FT /translation="MPDFVNLWIYLSSTPLFGLTATLTVYLSAHAMYLRLGQVPLANPV FT LWSMVVLAAGLLAFGVPYPTYFAGAQFIHFLLGPAVVALAWPLWMRRAELRRRWARLLW FT AALFGGAVACASAVLLGWAVGLPRDIILSLAPKSVTAPVAMGLSETLGGIPALSAVFAA FT LTGLVGALTGKYLFDLLGAVRGRQDWADRGFALGTVSHGIGAARAIQVNADAGAYAGLA FT LGLQVILASLLIPVAFRLAAGLGGS" FT misc_feature join(81708..81776,81810..81878,81894..81962,81999..82067, FT 82158..82226,82341..82409) FT /note="6 probable transmembrane helices predicted for FT BB3337 by TMHMM2.0 at aa 5-27, 39-61, 67-89, 102-124, FT 155-177 and 216-238" FT CDS complement(82450..83160) FT /transl_table=11 FT /locus_tag="BB3338" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2086" FT /db_xref="UniProtKB/TrEMBL:Q7WH71" FT /protein_id="CAE33830.1" FT /translation="MALVLARFGFGFCMLLAALVLLAAATLLATRLVGWAVRAFALERS FT QALASGVAIFILVALALWGCHAVGEVLYGAIGATALVGGAPHWLAGNSHVSAAALMGAT FT TAAAMLAGGPAFWRWLRARRAAAAEQPAPRKAAPPKGAKPAARAAKAAAKTQIAPRGQR FT IPWLGWTAFFLLFIGAAVLAFAYIVAPIEAGASGLRLEHATRARPVYLAGLTLLGGGAF FT FLLAWLSRRRPPGD" FT misc_feature complement(join(82477..82536,82594..82662,82810..82878, FT 82891..82950,82969..83022,83080..83148)) FT /note="6 probable transmembrane helices predicted for FT BB3338 by TMHMM2.0 at aa 5-27, 47-64, 71-90, 95-117, FT 167-189 and 209-228" FT misc_feature complement(83092..83160) FT /note="Signal peptide predicted for BB3338 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.416 between residues 23 and 24" FT CDS complement(83620..84942) FT /transl_table=11 FT /gene="aceA" FT /locus_tag="BB3339" FT /product="putative isocitrate lyase" FT /EC_number="4.1.3.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP2085" FT /db_xref="GOA:Q7WH70" FT /db_xref="HSSP:1IGW" FT /db_xref="InterPro:IPR018523" FT /db_xref="UniProtKB/TrEMBL:Q7WH70" FT /protein_id="CAE33831.1" FT /translation="MSNRETEIRNLQKDWAENTRWQGIKRAYSAEDVIRLRGSVAVEHS FT LARRGATRLWDSLHSEPFVNSLGALTGNQAMQQVKAGLKAIYLSGWQVAGDANLAGEMY FT PDQSLYPANSVPQVVRRINNALARCDQIQWMEGKNPGDQDYIDYYAPIVADAEAGFGGV FT LNAFELMKAMIEAGAAGVHFEDQLASVKKCGHMGGKVLVPTREAVSKLVSARLAADVMG FT TPTILLARTDADAADLVTSDVDENDRPFITGERTVEGFFRTRAGLDQAISRGLAYAPYA FT DLIWCETSTPNLEYARKFAEAVHRQFPGKLLAYNCSPSFNWKKNLDDGTIAKFQRELGA FT MGYKFQFITLAGFHALNYGMFELAHGYARRQMSAFVELQQKEFAAAELGFTAVKHQREV FT GTGYFDAVTQTIEGGQSSTTALTGSTEEAQFEHGGQAVKAA" FT misc_feature complement(83653..84924) FT /note="HMMPfam hit to PF00463, DE Isocitrate lyase family, FT score 2.9e-245" FT misc_feature complement(84103..84126) FT /note="PS00030 Eukaryotic putative RNA-binding region RNP-1 FT signature." FT misc_feature complement(84355..84372) FT /note="PS00161 Isocitrate lyase signature." FT CDS 85171..86082 FT /transl_table=11 FT /locus_tag="BB3340" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2084" FT /db_xref="GOA:Q7WH69" FT /db_xref="InterPro:IPR001474" FT /db_xref="UniProtKB/Swiss-Prot:Q7WH69" FT /protein_id="CAE33832.1" FT /translation="MTESAFHIAKKAGRGSAYNAGIIAYADPVSMSLSNAPLGQHVAYP FT SQYDPGLLFPIPRATNRASLQLGATLPFTGVDLWNAYELSWLDARGKPRVAMATFSFPA FT DSPNIVESKSFKLYLNSFNQTRLPNAQALRDRLERDLAAAAGAPVGLEFISPQRFGELN FT MAELDGIYIDKLDIEIDTYEPAPQLLQCAPGDEVEETLATRLLKSNCPVTGQPDWASLQ FT VRYRGRPIDRAALLKYVVSFRQHAEFHEHCVERIFGDIMRACQPRQLTVYARYTRRGGL FT DINPWRSNFESAPPADVRTARQ" FT misc_feature 85381..85398 FT /note="PS00343 Gram-positive cocci surface proteins FT 'anchoring' hexapeptide." FT misc_feature 85765..86067 FT /note="HMMPfam hit to PF01227, DE GTP cyclohydrolase I, FT score 6e-06" FT CDS complement(86089..87342) FT /transl_table=11 FT /locus_tag="BB3341" FT /product="putative transmembrane transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2083" FT /db_xref="GOA:Q7WH68" FT /db_xref="InterPro:IPR016160" FT /db_xref="UniProtKB/TrEMBL:Q7WH68" FT /protein_id="CAE33833.1" FT /translation="MAMNSETAVLDSPALRRRDWQIILLIGVAHSSSHFFQLVLPSLYV FT SLGTEFGLDFARLGLLVSVFYVVSGLGQASSGFVVDRIGARPVLWFGLACFVLSAVLIG FT AASGYAMLMLAAAIGGIGNSVFHPADYSIINHRVSPPRLGHAFSLHGLTGNLGWALTPV FT FITTITLLASWRVAAFSAAALVAVVLLMTVIGRDLLGGAAPAEAGGKSAARPAAQESVW FT QTLAALLARPALWGAFLFFACTSIALSSVQNYTIPLLGQLYDLSKVAASSALSGYMVAS FT ALGMAAGGFLVSANPRTELTVTAALIMAGLTLVVLAMGWVPAGWAALVVGLAGFCSGVA FT APSRDMLIRRVTPKGATGSVYGLVYSGMDVGSALGPLGFGLLLDAGMAHGPWVGAGVAF FT AAAALLAQWIAMQARRTA" FT misc_feature complement(86098..87324) FT /note="HMMPfam hit to PF00083, DE Sugar (and other) FT transporter, score 0.0092" FT misc_feature complement(join(86113..86181,86194..86262,86299..86367, FT 86377..86445,86464..86532,86575..86643,86761..86829, FT 86839..86907,86965..87018,87031..87084,87103..87171, FT 87214..87282)) FT /note="12 probable transmembrane helices predicted for FT BB3341 by TMHMM2.0 at aa 21-43, 58-80, 87-104, 109-126, FT 146-168, 172-194, 234-256, 271-293, 300-322, 326-348, FT 361-383 and 388-410" FT misc_feature complement(86707..86730) FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site." FT CDS complement(87506..88078) FT /transl_table=11 FT /gene="pgsA" FT /locus_tag="BB3342" FT /product="putative CDP-diacylglycerol--glycerol-3-phosphate FT 3-phosphatidyltransferase" FT /EC_number="2.7.8.5" FT /note="ortholog of Bordetella pertussis (BX470248) BP2082" FT /db_xref="GOA:Q7WH67" FT /db_xref="InterPro:IPR004570" FT /db_xref="UniProtKB/TrEMBL:Q7WH67" FT /protein_id="CAE33834.1" FT /translation="MPINVPIFLTWLRIAMIPLVVGLFYLPESWMSVPMRDTFAAWAFI FT IAALTDWFDGWLARRWNQTSAFGAFLDPVADKLMVCAALIVLLDLSRVDAFISLIIIGR FT EITISALREWMAKIGASASVAVHRLGKFKTAAQMVAIPCLLYDQPLFGLSSRLIGDVLI FT VVAAVLTVWSMLYYLQRAWPAIREKSQ" FT misc_feature complement(87527..87958) FT /note="HMMPfam hit to PF01066, DE CDP-alcohol FT phosphatidyltransferase, score 2.8e-36" FT misc_feature complement(join(87545..87613,87818..87886,87905..87964, FT 88001..88060)) FT /note="4 probable transmembrane helices predicted for FT BB3342 by TMHMM2.0 at aa 7-26, 39-58, 65-87 and 156-178" FT misc_feature complement(87851..87919) FT /note="PS00379 CDP-alcohol phosphatidyltransferases FT signature." FT CDS complement(88118..89857) FT /transl_table=11 FT /gene="uvrC" FT /locus_tag="BB3343" FT /product="putative excinuclease ABC subunit C" FT /note="ortholog of Bordetella pertussis (BX470248) BP2081" FT /db_xref="GOA:Q7WH66" FT /db_xref="InterPro:IPR000305" FT /db_xref="UniProtKB/Swiss-Prot:Q7WH66" FT /protein_id="CAE33835.1" FT /translation="MYVGKARDLKKRVSSYFQKNLASPRIAQMVAKVASVDVTVTRSEA FT EALLLENNLIKSLRPRYNILFRDDKSYPYLLITGHAWPRIAYYRGATSKRGQYFGPYPN FT SWAVRETIQILQKVFRLRTCEDTVFANRSRPCLLHQIGRCSAPCVGVIEAGDYAHDVQR FT AVRFLNGEAREVMDEIEARMLQASTELRFEEAAVLRDQMGSLSKVLHQQTMENVGGDDT FT DVIAVASAGGKICVNLAMVRGGRHLGDKPFFPTHAEGEQPAQVLEAFVAQHYADGAMPP FT VLVCSHALPDSGLVGLLAEQGGTRAARVLTRPQGVRRSWLEQAQKNAEMALARALTESG FT ARAGRTLALAEALDLDTDEESLDALRIECFDISHTAGEATQASCVVFLHHDMQPSLYRR FT YNIVGITPGDDYAAMRQVLTRRFGKVADGEAPMPGLVLIDGGKGQVEVARQVFVELGLD FT IQSLVGVAKGEGRKVGLETLVFADGRPPVALGKESAALMLIAQVRDEAHRFAITGMRAR FT RAKTRNVSRLEEIEGIGARRRQRLLARFGGLSGVSSASIEDLASVEGISQELAVRIYDA FT LHG" FT misc_feature complement(88130..88219) FT /note="HMMPfam hit to PF00633, DE Helix-hairpin-helix FT motif, score 0.0003" FT misc_feature complement(89234..89341) FT /note="HMMPfam hit to PF02151, DE UvrB/uvrC motif, score FT 3.5e-09" FT misc_feature complement(89630..89854) FT /note="HMMPfam hit to PF01541, DE Endo/excinuclease amino FT terminal domain, score 4.5e-15" FT CDS complement(89910..90971) FT /transl_table=11 FT /gene="nagZ" FT /locus_tag="BB3344" FT /product="putative beta-hexosaminidase" FT /EC_number="3.2.1.52" FT /note="ortholog of Bordetella pertussis (BX470248) BP2080" FT /db_xref="GOA:Q7WH65" FT /db_xref="InterPro:IPR001764" FT /db_xref="UniProtKB/Swiss-Prot:Q7WH65" FT /protein_id="CAE33836.1" FT /translation="MSSKKKTKPVLPPGPVMVDVAGTTLTKDEKRRLRNPLVGGVILFA FT RNFTDRRQLCALTRAIHKARKEPLLIAVDHEGGRVQRFRDDGFTALPPMQELGKLWDRD FT PLAAMRLATEAGYVLAAELRACGVDLSFTPVLDLDYGVSKVIGNRAFHHDARVVTMLSR FT ALAQGLALAGMAACGKHFPGHGFVGADSHHEIPVDPRPLARILKDDAAPYAWLGDLVMP FT AVMPAHVIYPKVDAQPAGFSRRWVSEILRERLGYDGVVFSDDLTMEGASVAGDILARAE FT AALGAGCDMVLVCNRPDLADELLDRLQVQHPAASVERIRRLMPRFAAPDWDTLQNDSRY FT QHARRLQSQIVSG" FT misc_feature complement(90054..90911) FT /note="HMMPfam hit to PF00933, DE Glycosyl hydrolase family FT 3 N terminal domain, score 4.7e-47" FT CDS complement(91010..91471) FT /transl_table=11 FT /gene="acpS" FT /locus_tag="BB3345" FT /product="putative holo-[acyl-carrier protein] synthase" FT /EC_number="2.7.8.7" FT /note="ortholog of Bordetella pertussis (BX470248) BP2079" FT /db_xref="GOA:Q7WH64" FT /db_xref="HSSP:1FTH" FT /db_xref="InterPro:IPR004568" FT /db_xref="UniProtKB/Swiss-Prot:Q7WH64" FT /protein_id="CAE33837.1" FT /translation="MSSVSAAGATPPASPGCIAGIGMDLLRIERIERALARHGDRFAQK FT ILGPEELAKFHARRRRDPARGVRFLATRFAAKEAFSKAIGLGMRMPMSWRRVQTLNAPG FT GRPVLVIGAELADWFDARFGAAHVSITDESDMAAAYVIVERKPAPDGRP" FT misc_feature complement(91052..91414) FT /note="HMMPfam hit to PF01648, DE 4'-phosphopantetheinyl FT transferase superfamily, score 5e-19" FT CDS complement(91556..92302) FT /transl_table=11 FT /gene="pdxJ" FT /locus_tag="BB3346" FT /product="pyridoxal phosphate biosynthetic protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2078" FT /db_xref="GOA:Q7WH63" FT /db_xref="HSSP:1HO1" FT /db_xref="InterPro:IPR004569" FT /db_xref="UniProtKB/Swiss-Prot:Q7WH63" FT /protein_id="CAE33838.1" FT /translation="MIELGVNIDHVATLRQQRHTAYPDPVQAALRAEDAGADLITLHLR FT EDRRHIQDADVYAIRPLLRTRMNLECAVTPEMLEIACAVKPSDVCLVPEKRTELTTEGG FT LDVAGAQAAVTDAVQLLAEAGIRVSLFIDPDARQIEAAARAGAPVIELHTGAYAEARDD FT AAVQAELARVRAAVAEGLRHGLRVNAGHGLHYGNVQAVAALDGIAELNIGHAIVAQSIF FT DGWDKAVRDMKALMVQARLAAVRGHA" FT misc_feature complement(91589..92299) FT /note="HMMPfam hit to PF03740, DE Pyridoxal phosphate FT biosynthesis protein PdxJ, score 4.7e-131" FT CDS complement(92299..93798) FT /transl_table=11 FT /locus_tag="BB3347" FT /product="putative efflux system outer membrane component" FT /note="ortholog of Bordetella pertussis (BX470248) BP2077" FT /db_xref="GOA:Q7WH62" FT /db_xref="InterPro:IPR010131" FT /db_xref="UniProtKB/TrEMBL:Q7WH62" FT /protein_id="CAE33839.1" FT /translation="MMAVMYKRSALSVLVAAALAGCSLAPDYKRPEAPVQANWPDQPKV FT QYGAYASPTSLGEQPAAAVAPQGATPADEIGWREFFRDARLQKLIELALVNNRDLRVAV FT QRVEEARAQYGVQRGAQWPSIGAGIQGQRQHLPPDMRPLGPDSTSISSQYQAGLGLTTF FT EIDLFGRLRNLSEAAYQQYLSTEQAQRSVHITLVGAVAQSYFNLRAAEVQLELTQKTLA FT SRQESYNLVKTRFDGGVASELDLNQSKSLLDSASADLAALARARAQAANALVVLVGLPG FT LPEDLPAPAVFGRDQLLASVPAGLPSDLLTRRPDILAAENQLKAANANIGAARAAFFPT FT ISLTGLLGVASPSLDNLFKGGQGYWSFSPSITTPLFAGGSIREGLNLAKARDNIAVAQY FT EQSIQQAFREVSDALAGEATYSAQLDAQRALQVAAGRTLELSNLRYNNGIDSYLQVQTA FT QVDFFNAQLGLVQTGLAALINRVELYKALGGGWQESTTKQP" FT misc_feature complement(92305..92895) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02321, DE Outer membrane efflux FT protein, score 6.2e-46" FT misc_feature complement(92932..93543) FT /note="HMMPfam hit to PF02321, DE Outer membrane efflux FT protein, score 1.5e-42" FT misc_feature complement(93724..93798) FT /note="Signal peptide predicted for BB3347 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.987) with cleavage site FT probability 0.776 between residues 25 and 26" FT misc_feature complement(93733..93765) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(93795..97025) FT /transl_table=11 FT /locus_tag="BB3348" FT /product="putative efflux system transmembrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2076" FT /db_xref="GOA:Q7WH61" FT /db_xref="HSSP:1IWG" FT /db_xref="InterPro:IPR000731" FT /db_xref="UniProtKB/TrEMBL:Q7WH61" FT /protein_id="CAE33840.1" FT /translation="MPQFFIDRPIFAWVVALFILLTGILAIPNMPVSQYPDVAPPAITI FT TATYPGASAKEVAESVTSIIEDQLNGAKGLLYYESVSDSYGQSQITATFAPGTDPDLAQ FT VDVQNRVSNVTAQLPVAVMQQGLQYEQTSAGFLMIVTLSSTDGTLDQTALADYITRNVK FT NPVSRVPGVGQFQLFAAPRAMRIWVDPDKLVGFNLSMAEVNQAISQQNVLISAGSIGAP FT PNPDSQRATATVIVNGQLSTIEGFGQIVLRANTDGSKVLLRDVARIEVGADNYQFGARL FT NGKPTAAFAIVLSPDANALATAEGVRQQMASLSQYFPSNIRYDIPYDTAPYVKVSIEQV FT IHTLVEAMVLVFLVMFLFLQNVRYTLIPALVVPVAMLGAFAVMLALGFSINVLTMFAMV FT LAIGILVDDAIVVVENVERIMASEGLSPKEATKKAMPQISGAIVGITLVLVTVFLPLAF FT MTGSVGVIYRQFSVAMAVSIFFSAFLALSFTPALCATILKPIPKGHHQEKKGFFGWFNR FT KFDATTHNYQNWVSRILHKGGRMMLAFALLVVLLGWLYMRLPSSFLPEEDQGYVVSNIE FT LPTGASANRTIEVIEEVENYFRNIPAVENVITVQGYSFNGNGLNAAIAFTTLKDFSERK FT SRADSAGAIAFTAFSKQLMGIHDAQVFTLVPPAISSLGNASGFDFRLQDRGGAGTEALG FT AATAELMGMAAKSPVLSQVRITGLGPGSQLSLTIDRDKAAALGVNFDEAATLISTAVGS FT AFLNKFPNMGRMQNIWVQADQQYRMQVEDLLKLNARNNQGGMVPLSTFVSAKWVQGPVQ FT VVRYNSYESVRIGGDAAAGYTTGEAMQEMQDLVARLPQGFGYEWNGLSYQERLAGNQAP FT ILMGLALLVVFLVLAALYESWAIPLSVMLVVPLGMLGAVALVTVLGMSNDVYFQVGMVT FT VIGLAAKNAILIVEFAKDQYARGQGLYESAVEAARLRFRPILMTSLAFILGVVPLAIAT FT GAGAASQRAVGIGVLGGMLAATPFAVIFVPTFFVVVLGLFKTRPRLLGAELRAFEEEQA FT AKRAAEQQQPQDGAATPAPQTGGQENKE" FT misc_feature complement(93948..97025) FT /note="HMMPfam hit to PF00873, DE AcrB/AcrD/AcrF family, FT score 0" FT misc_feature complement(join(93951..94019,94062..94130,94191..94259, FT 94272..94340,94359..94418,95358..95417,95535..95603, FT 95646..95714,95784..95852,95862..95930,95949..96008, FT 96942..97001)) FT /note="12 probable transmembrane helices predicted for FT BB3348 by TMHMM2.0 at aa 9-28, 340-359, 366-388, 392-414, FT 438-460, 475-497, 537-556, 870-889, 896-918, 923-945, FT 966-988 and 1003-1025" FT CDS complement(97092..98336) FT /transl_table=11 FT /locus_tag="BB3349" FT /product="putative efflux system inner membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2075" FT /db_xref="GOA:Q7WH60" FT /db_xref="InterPro:IPR006143" FT /db_xref="UniProtKB/TrEMBL:Q7WH60" FT /protein_id="CAE33841.1" FT /translation="MRFSPQRVSAFGLVATLSVLLAACGEKPQFNPGMPQVSVITVQPQ FT RAAVVSELPGRVDAVRDAQIRARVTGIVQKIAFEQGGDVQADQLLFKIDPAPYQAAYDQ FT AAAQLKQAQADLFSAKLLAERYAPLVKANAVSKQEYDNAVARYRQADASVAAAKANLTN FT AKINLGYTDVTSPIKGRIGKPLVTEGALVEATSATQMATVQQLDPIYVDFTQSTADLAA FT LRRAFAAGKLQQVGKDAVKVQVVLEDGSIYPEAGKLLFTGVTVDPTTGQVNLRAEVPNP FT DNILLPGMYVRVRVDQGVDDKALLVPQQALQRTADGMQSLMLVKDNKVEQVPVTTGSVI FT HNQWVINSGLAAGDVVVVEGFQKIRPGAPVQASPWNKGGAAPAGQQPAPGQQAPAQQPA FT KQEPAKQAPAAGQQS" FT misc_feature complement(97263..98156) FT /note="HMMPfam hit to PF00529, DE HlyD family secretion FT protein, score 1e-67" FT misc_feature complement(98265..98297) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature complement(98268..98336) FT /note="Signal peptide predicted for BB3349 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.978) with cleavage site FT probability 0.675 between residues 23 and 24" FT CDS complement(98589..98963) FT /transl_table=11 FT /locus_tag="BB3350" FT /product="putative transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2074" FT /db_xref="GOA:Q7WH59" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WH59" FT /protein_id="CAE33842.1" FT /translation="MSRRRSASFPAAKPSAGAQPWELRYQAWVLVTPAGAIVHLSAAER FT ICMLGLLAHPRRELTRAALVHSLPGLGAGAINVVISRLRRKVGETGEVLPLRTVHGMGY FT VFLAGLRSDTAPPQATPAAG" FT misc_feature complement(98655..98858) FT /note="HMMPfam hit to PF00486, DE Transcriptional FT regulatory protein, C terminal, score 0.00046" FT CDS complement(99066..100244) FT /transl_table=11 FT /locus_tag="BB3351" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2073" FT /db_xref="GOA:Q7WH58" FT /db_xref="InterPro:IPR002641" FT /db_xref="UniProtKB/TrEMBL:Q7WH58" FT /protein_id="CAE33843.1" FT /translation="MSKRKARRGAGMPDYETVALVLQGGGALGAYQAGVYEGLHAAGIR FT PNWLAGISIGGINAAIIAGAPVDERVGRLRGFWEAICRPTGFAGLPWGDAWAALFANAP FT FGFGSNQSNGQLAAFNALTRGQPGFFEPRFPPPYLVQGGGAAATSFYDTTPLLQTLRDY FT VDFDLLNRGDVRVSLGAVNVRTGNFAYFDSRETVIRPEHVMASGALPPGFPAIEIDGEF FT YWDGGLVSNTPLTKVLAVHPMRDTLAFQVDLWPARGPLPTSLEEVAERQKDIQYSSRTR FT IVTDTFRRQLKLRRSLQRVLDRLPPQVRSSRELAQIRREACTPLVNVVNLIYEANQFER FT HSKDYEFNTESMREHWRFGLADIERTLAQPGVLDKPSPDESFVTHDIHRADA" FT misc_feature complement(99531..100187) FT /note="HMMPfam hit to PF01734, DE Patatin-like FT phospholipase, score 4.6e-13" FT CDS complement(join(100258..100557,100559..100846)) FT /pseudo FT /transl_table=11 FT /locus_tag="BB3352" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2072" FT misc_feature complement(100769..100846) FT /note="Signal peptide predicted for BB3352 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.994) with cleavage site FT probability 0.775 between residues 26 and 27" FT misc_feature complement(100790..100822) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 100957..101763 FT /transl_table=11 FT /locus_tag="BB3353" FT /product="putative molybdenum-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2071" FT /db_xref="GOA:Q7WH57" FT /db_xref="HSSP:1B9N" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WH57" FT /protein_id="CAE33845.1" FT /translation="MSAPSLQLDGTLWLRSGDQPWGGQHRIDLLAQIEATGSISAAARA FT AGMSYKGAWDAIDAMNNLAGEPLVLRSAGGRGGGGTRLTDRARRLIATFRALQAEHQRF FT VQHLAASGLDAAGDIDIMRRFMLKTSARNRLLGTVEAVHAGAVNDEIVLRIAGGQRIAA FT VITRASTEELGLAPGTQAIALIKAQAVLLGLPGPGLRLSARNQLPGKVAEVRPGAVNSE FT IIVDLDGGGTLAAIITEESARDLALAAGTPVCALFDAASVMLGVLD" FT misc_feature 100987..101289 FT /note="HMMPfam hit to PF02573, DE N-terminal HTH domain of FT molybdenum-binding protein, score 2e-40" FT misc_feature 101341..101532 FT /note="HMMPfam hit to PF03459, DE TOBE domain, score FT 1.3e-14" FT misc_feature 101557..101748 FT /note="HMMPfam hit to PF03459, DE TOBE domain, score FT 4.6e-17" FT CDS complement(101789..102583) FT /transl_table=11 FT /locus_tag="BB3354" FT /product="putative ABC-transporter ATP-binding component" FT /note="ortholog of Bordetella pertussis (BX470248) BP2070" FT /db_xref="GOA:Q7WH56" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WH56" FT /protein_id="CAE33846.1" FT /translation="MLSAKDLHITFNAGTPIETRALRGLSLDIPNGQFVTVIGSNGAGK FT STFLNAISGDLPVDTGTIRINDADVTRQPVWERAGRVARVFQDPMAGTCEDLTIEENMA FT LAQMRGARRGFSRAVKASMREGFRERLATLGLGLENRLADRIGLLSGGQRQAVSLLMAA FT LQPSRILLLDEHTAALDPRTADFVLQLTARIVAESQLTTMMVTHSMRQALDVGERTVML FT HQGQVVLDVSGDERKGMDVPDLLAMFERVRGEKLSDDALLLG" FT misc_feature complement(101909..102490) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 5e-40" FT misc_feature complement(102095..102139) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(102446..102469) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(102585..103475) FT /transl_table=11 FT /locus_tag="BB3355" FT /product="putative transmembrane component of ABC FT transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP2069" FT /db_xref="GOA:Q7WH55" FT /db_xref="InterPro:IPR001851" FT /db_xref="UniProtKB/TrEMBL:Q7WH55" FT /protein_id="CAE33847.1" FT /translation="MSLFSLLGALEIGLIFSLVALGVLISFRLLRFPDLTVDGSFPLGG FT AVAATLIAAGYDPFTSTIVATLAGAAAGLVTGWLNVRLRIMDLLASILMMIALYSVNLR FT IMGKPNVPLITEPTVFTLLQPQWLSDYVARPLILLVVVIIVKLALDWFLATQAGLAMRS FT TGSNGRMARAQGVNTGAMILAGMALSNALVALAGALFAQTQGGADISMGIGTIVIGLAA FT VIVGESILPSRRLVMATLAVILGAIVYRFFIALALNSDFIGLKAQDLNLVTAVLVTIAL FT VIPMLKRRLVGRKGA" FT misc_feature complement(102600..103472) FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 0.0017" FT misc_feature complement(join(102618..102671,102714..102773, FT 102786..102845,102873..102941,103017..103085, FT 103155..103214,103233..103301,103389..103457)) FT /note="8 probable transmembrane helices predicted for FT BB3355 by TMHMM2.0 at aa 7-29, 59-81, 88-107, 131-153, FT 179-201, 211-230, 235-254 and 269-286" FT CDS complement(103585..104559) FT /transl_table=11 FT /locus_tag="BB3356" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2068" FT /db_xref="InterPro:IPR007487" FT /db_xref="UniProtKB/TrEMBL:Q7WH54" FT /protein_id="CAE33848.1" FT /translation="MLIGKKHFLTVGALALAMAIHAAPVMAQQKSVAITAIVEHPALDS FT VRDGVQDALKQAGYESGKNLKWQYQSAQGNTGTAAQIARKFVGDRPDVIVAIATPSAQA FT VVAATKDVPVVYSAVTDPVAAQLVPSMEASNTNVTGVSDLLALDKQIELIKKVVPNAKR FT VGMVYNPGEANSVVVVKQMQDLLPKAGMTLVEAAAPRTVDVASAARSLIGKVDVIYTNT FT DNNVVSAYESLVKVGNDAKIPLVASDTDSVKRGAIAALGINYRDLGVQTGKMVVRILKG FT EKPGAMPSETSSKLELYVNPGAAAKQGVTLSDALVKSAAQVIK" FT misc_feature complement(104479..104559) FT /note="Signal peptide predicted for BB3356 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.987 between residues 27 and 28" FT CDS complement(104718..105230) FT /transl_table=11 FT /locus_tag="BB3357" FT /product="putative superoxide dismutase" FT /EC_number="1.15.1.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP2067" FT /db_xref="GOA:Q7WH53" FT /db_xref="HSSP:1EQW" FT /db_xref="InterPro:IPR018152" FT /db_xref="UniProtKB/TrEMBL:Q7WH53" FT /protein_id="CAE33849.1" FT /translation="MKSLIALALAAMSGVAAAQSVEMSLLSPKGDDQKIGQIKYEQTDY FT GVLFTPDLHGLAPGVHGFHLHAKPSCAMTKVDGKDMVGGGAGGHWDPDNTGAHKGPYDK FT TGHKGDLPAVYVTADGKATYPVLAPRLKVADLAGHALMIHVGGDNYSDHPAALGGGGGR FT MACGVVK" FT misc_feature complement(104724..104759) FT /note="PS00332 Copper/Zinc superoxide dismutase signature FT 2." FT misc_feature complement(104724..105170) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00080, DE Copper/zinc superoxide FT dismutase (SODC), score 1.6e-35" FT misc_feature complement(105015..105047) FT /note="PS00087 Copper/Zinc superoxide dismutase signature FT 1." FT misc_feature complement(105177..105230) FT /note="Signal peptide predicted for BB3357 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.918 between residues 18 and 19" FT CDS complement(105387..106358) FT /transl_table=11 FT /locus_tag="BB3358" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2066" FT /db_xref="GOA:Q7WH52" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7WH52" FT /protein_id="CAE33850.1" FT /translation="MKYPILGAALIAATALGAAAPAQAAWPERPVTIIVPFPAGGGTDT FT FARPLAQQLGMQLGQSVVIDNKGGAGGTVGAAVASKAKPDGYTFFMGGAHHALAPSLYK FT NLSYDIQKDFVPVALLAQPPQVVVINTAKLPVKSLQEFIEYARKRPGDINFGTAGKGST FT HHLAGELFAMQTGIKLVDVPYQGAGPMLSALIGGQVDLAFDGLGSSAGHIRAGTIKPLA FT VAASQRSPSFPDVPTAAQAGVPNYEVSTWYALWAPAGTPQEAVDKMTAAVTKALNDPKI FT RETWAGNGSAIPNLTGPQFGAFVDSEVTRWAKVVKDSGVTLD" FT misc_feature complement(105399..106223) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.5e-104" FT misc_feature complement(106278..106346) FT /note="1 probable transmembrane helix predicted for BB3358 FT by TMHMM2.0 at aa 5-27" FT misc_feature complement(106287..106358) FT /note="Signal peptide predicted for BB3358 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.982 between residues 24 and 25" FT CDS complement(106554..108095) FT /transl_table=11 FT /locus_tag="BB3359" FT /product="putative malonyl-CoA synthetase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2064" FT /db_xref="GOA:Q7WH51" FT /db_xref="HSSP:1BA3" FT /db_xref="InterPro:IPR000873" FT /db_xref="UniProtKB/TrEMBL:Q7WH51" FT /protein_id="CAE33851.1" FT /translation="MSNANLYAVLEGGFPADRDRVALETPTLRYTWNDIDRASACLANL FT LASLKLPAGARVAVQVEKSPEALLLYLATLRAGLVYLPLNTAYREAEIEYFLGNAEPAV FT VVCTSANAGWVRRAAAKAGSAHVYTLDEDRTGTLLQAAAAMPQRFRTVARKADDLAAIL FT YTSGTTGRSKGAMLSHGNLASNARVLHQYWGWREDDVLLHMLPIFHVHGLFVASHGALL FT AGARMIWLPRLDVDQALRYLPQSTVMMGVPTYYVRLLADARFDRAACANMRLFISGSAP FT LLTETFADFQARTGQTILERYGMSETVMLTSNPCRPADGERLGGTVGKALPGVQVRVVD FT DAGQALAAGEIGNVQVRGPNVFSGYWRMPEKTREEFTADGWFKTGDVGRWGGESGGRAV FT PADYLSIVGRSKDLIISGGYNVYPKEIETVIDEMQGVLESAVIGVPHPDFGEAVVAVVV FT PRAGAAIDVAAMQADLKSRIANFKVPKRIHVVDQLPRNTMGKVQKNVLRDAYAAS" FT misc_feature complement(106773..108005) FT /note="HMMPfam hit to PF00501, DE AMP-binding enzyme, score FT 1.1e-117" FT misc_feature complement(107577..107612) FT /note="PS00455 Putative AMP-binding domain signature." FT CDS complement(108101..108907) FT /transl_table=11 FT /locus_tag="BB3360" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2063" FT /db_xref="GOA:Q7WH50" FT /db_xref="HSSP:1DCI" FT /db_xref="InterPro:IPR001753" FT /db_xref="UniProtKB/TrEMBL:Q7WH50" FT /protein_id="CAE33852.1" FT /translation="MSRAMKPNSQPGQILCRIDAGVAHVTLSHPGRMNAMTVAMWRQLR FT EVFEALGADAALRCVVVAGAEGHFAAGADIREFPAERADLAGVQRYHREILAPALAALA FT ACPHPVLARIEGVCVGGGLEIAAQCDLRIAAESARFGVPIGKLGFPMAPDEMRGLLDLV FT GRAATLAILLEGRVFDAAEALRLGLVTRTVPVAELDQAVQRSVAAILGGAPLAARINKR FT QARRLCAGAPLGEDEYLDFFSYAESRDHREGVRAFLAGTAPTFTGD" FT misc_feature complement(108326..108841) FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 1.2e-29" FT CDS complement(108904..110040) FT /transl_table=11 FT /locus_tag="BB3361" FT /product="putative malonyl-CoA decarboxylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2062" FT /db_xref="GOA:Q7WH49" FT /db_xref="InterPro:IPR007956" FT /db_xref="UniProtKB/TrEMBL:Q7WH49" FT /protein_id="CAE33853.1" FT /translation="MFEARLTDVRANKLAQAWRLAYEQADGKRRRAMLGGLAQVGAGMQ FT GDGAQGTRLFKRFNALPDGLRFLVALRADMLRWRKQVAGLQALDKELEALLSAWFDVGL FT LELRPLTWDSPASLLEKLILYEAVHEIRSWDDLRHRVAGDRRCYAYFHPQMPDVPLIFV FT EVAFSAQMADNVQALLDTSAPPQDLDKARWAIFYSISNTQPGLRGISFGNFLLKRVIDR FT LLQELPKLKFFATLSPIPGFADWLSRLDAQEVEQAVRDKARTRSGAPDGARWVARLARA FT ATGKPSEVVQRAGLRLAARYLQAMRAGQPLDPVARFHLGNGARIERLNWAADTSAKGLA FT QSCGMMVNYLYELGDLDGNLARLNEGKPQVSRGIARLG" FT CDS complement(110156..110920) FT /transl_table=11 FT /locus_tag="BB3362" FT /product="putative gntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2061" FT /db_xref="GOA:Q7WH48" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WH48" FT /protein_id="CAE33854.1" FT /translation="MTTPIVRQALYLEVADRLRTMIRTHALGAGAWVDEAGLTEQLGIS FT RTPLREALKVLATEGLVRLEPGRGCFVNELTVRDLEQIFPLMAMLEGRCAFEAAQRAGD FT DDLRALEPLHRALQAHAQAGRIDAYYETNYRIHVAVQTLADNRWLSDMVDNLRKVLSLF FT RHKSLALPGRIRESCAEHMAIFAALKARDPEGAEALTRKHLLRQLAALQALAGQEPAGG FT AAAIDSPAVQAVQELNHVRTRSPGIRTRRTHA" FT misc_feature complement(110705..110881) FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 9.9e-13" FT CDS complement(111034..111840) FT /transl_table=11 FT /locus_tag="BB3363" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2060" FT /db_xref="UniProtKB/TrEMBL:Q7WH47" FT /protein_id="CAE33855.1" FT /translation="MRRGGRSGYNAAMPIRYTPSELDQPSLSEADGIRYLHFGTEWVQG FT AMLIRDPARLVLEYTAQMMAWLLFLEPPREQSIGLLGLGAGSLARFCLKHTRSPVTVVE FT WNPQVTAVCQMFFRLPTPQRLDVHHDDAGAWVADPARAGDCPVLMVDLYDAQARGPVRD FT SVKFYRDCRRVLGEVGVLSVNLFGRHESYGRNIDNLSKAFDDRLVLLPEIDAGNQIVLA FT FSGPPLAITPAELLARAETVEAQYGLPARRWARALTRHAVDGVLHF" FT CDS complement(111887..113092) FT /transl_table=11 FT /locus_tag="BB3364" FT /product="putative thiolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2059" FT /db_xref="GOA:Q7WH46" FT /db_xref="HSSP:1DLU" FT /db_xref="InterPro:IPR002155" FT /db_xref="UniProtKB/TrEMBL:Q7WH46" FT /protein_id="CAE33856.1" FT /translation="MKTGGIDIMNEVVVVAAARTAIGDFGGGLKDVAPCDLGATVIREA FT LARAGVAGPEVGHVAVGHVINTEPRDMYLSRVAAINAGIGKETPAFNVNRLCGSGLQAI FT VSAAQTIMLGDTEIAVGAGAESMSRAPYIAPAQRWGARMGDSAMVDMMTGALSDPFGRM FT HMGVTAENVAARYSISRADQDALAVESHRRAAAAIDAGRFRDQIVPVTLKTRKGETVFD FT TDEHVRRDITIEGMAALRPVFQKENGTVTAGNASGLNDGAGAVVLMSAAAAAQRGIAPM FT ARLVAYAHAGVDPEIMGIGPVPATQAALKRAGLTVDQLDVIEANEAFAAQACAVTRQLE FT LDPAKVNPNGSGISLGHPIGATGAIITVKALYELQRVGGRYALVTMCIGGGQGIAAIFE FT RV" FT misc_feature complement(111893..112267) FT /note="HMMPfam hit to PF02803, DE Thiolase, C-terminal FT domain, score 2.5e-66" FT misc_feature complement(111908..111949) FT /note="PS00099 Thiolases active site." FT misc_feature complement(112280..113068) FT /note="HMMPfam hit to PF00108, DE Thiolase, N-terminal FT domain, score 2.9e-122" FT misc_feature complement(112760..112816) FT /note="PS00098 Thiolases acyl-enzyme intermediate FT signature." FT CDS complement(113141..113515) FT /transl_table=11 FT /locus_tag="BB3365" FT /product="putative tautomerase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2058" FT /db_xref="GOA:Q7WH45" FT /db_xref="InterPro:IPR004370" FT /db_xref="UniProtKB/TrEMBL:Q7WH45" FT /protein_id="CAE33857.1" FT /translation="MPLLNVQIMQGHQPAQKSALLAAACQAVVDSIGAPLASVRVVLEE FT VPAAHVIVAGELGRQMALVTVDMIAGRTDEQKEALIGALNRAVCDSIGIDGADVRVMIH FT DVSKANMGVANGISARAAGR" FT misc_feature complement(113357..113470) FT /note="HMMPfam hit to PF01361, DE Tautomerase enzyme, score FT 0.0012" FT CDS complement(113616..114878) FT /transl_table=11 FT /locus_tag="BB3366" FT /product="putative ABC-transporter ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2057" FT /db_xref="GOA:Q7WH44" FT /db_xref="HSSP:1B0U" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WH44" FT /protein_id="CAE33858.1" FT /translation="MSKIEVKNIYKIFGPHPGKWLQAARDGISKEDLLAKSGHTLGLRD FT ISLSIEEGSIYVIMGLSGSGKSTLIRHFNRLIEPSAGHILVDGVDVVSLNKRDLETFRQ FT KKMSMVFQRFGLFPHRTVLDNAGYGLAVQGVARAEREQRARHWLDQVGLSGFENQYPHQ FT LSGGMQQRVGLARALATDAEILLMDEAFSALDPLIRREMQDHLLQLQAKLNKTIVFITH FT DLDEALRLGNRIAILKDGELVQEGTPEDILLNPATEYVQSFLQDVNRTKVLNAAHAVNP FT PRLTLTMRSRPAHALDRMQALSYEYAPVLDGKRLAGVLMAAAAQQAVDEGARDVSRFVE FT DLASVPATAGLDQVLAQLVHSDQPVAVTGEGDEFIGMLSRKKVVELVTPVLAESDSADG FT QGDAADAASDGAGQAHERDAA" FT misc_feature complement(113715..113873) FT /note="HMMPfam hit to PF00571, DE CBS domain, score 1.7" FT misc_feature complement(113892..114050) FT /note="HMMPfam hit to PF00571, DE CBS domain, score 2.7" FT misc_feature complement(114159..114722) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 2.2e-69" FT misc_feature complement(114345..114389) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(114678..114701) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(114875..115732) FT /transl_table=11 FT /locus_tag="BB3367" FT /product="putative binding-protein-dependent transport FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2056" FT /db_xref="GOA:Q7WH43" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7WH43" FT /protein_id="CAE33859.1" FT /translation="MFPEVIPARAVRGAIDGFVDHLVTNYADTLEAMSQPFLSVLVWLE FT QVLRQSPWWAVVAVTIAIAWLVSRRIGLSLAMGALLCVIGVLGLWDAGMQTLALMIMAA FT GLSVVIGIPLGVLMARVDWLRAGMLPVLDVMQTMPSFVYLIPVVMLFGLGKIPAIIATV FT IYAVPPLIRLTDLGIRLVDREVLEAARAFGANPRQQLFGVQLPLALPNIMAGINQTTMM FT ALSMVVIASMIGARGLGYEVLLGINRLEVGRGLLAGLGIVVLAVLFDRITQSYGQRVRT FT GGQR" FT misc_feature complement(join(114929..114982,114995..115063, FT 115241..115309,115376..115444,115463..115522)) FT /note="5 probable transmembrane helices predicted for FT BB3367 by TMHMM2.0 at aa 71-90, 97-119, 142-164, 224-246 FT and 251-268" FT misc_feature complement(114992..115204) FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 2.2e-11" FT misc_feature complement(115115..115201) FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS complement(115905..116906) FT /transl_table=11 FT /locus_tag="BB3368" FT /product="putative periplasmic substrate-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2055" FT /db_xref="GOA:Q7WH42" FT /db_xref="InterPro:IPR007210" FT /db_xref="UniProtKB/TrEMBL:Q7WH42" FT /protein_id="CAE33860.1" FT /translation="MRFTPVKTLAALAALCAFSGAAQAADQPQCEVSRPVNFGGMNWES FT NLVLVDIERFIMEKGYGCKTDVLPTETLPALAALERGDLDINTEIWLNSVADPWDRAQK FT TGKVKRVGELYMGGEAWFVPRYTAERLPELKSAADLPKFKDRFKDPEEPGKGRFYGCPA FT GWGCEVTSTNLFHALKLDDSYTLYSPGTGAAQKAALMSAYKRKQDVVFYYWYPTPLVGS FT MDLVKLELPPYDAEKHKCLTAPKCSDPQPSAYPENPVFTAVNTRFSEEAPKLTEFLSKV FT AVPLPVMDQTLAHMEESGDESGAVAQWFLKNQADVWKKWVPADVAERVQTAL" FT misc_feature complement(116835..116906) FT /note="Signal peptide predicted for BB3368 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 24 and 25" FT CDS complement(117358..118623) FT /transl_table=11 FT /locus_tag="BB3369" FT /product="putative cyclopropane-fatty-acyl-phospholipid FT synthase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2053" FT /db_xref="GOA:Q7WH41" FT /db_xref="InterPro:IPR003333" FT /db_xref="UniProtKB/TrEMBL:Q7WH41" FT /protein_id="CAE33861.1" FT /translation="MNPLLSVVERKLQELPVPVQLTLPDGTVLGSPEARVRFVARDKTA FT LAHLAEGAVGVLGQDYVEGRIDIQGSMRDVMAAAAALLPSSPVDAARGGWLTELVRKVT FT SVWRHSIERDARQIEFHYDLSDDFYALWLDPRRVYSCAYYRTPDMTLAQAQEAKLDHIC FT RKLRLQPGERFLDVGAGWGGLLLWAAENYDVDATGITLSRNQHAYVNRLIEEKGLSGRV FT RMELLDYRKLDEGAPYDKIASVGMFEHVGRAQLPGYFAKLRRLVKPGGLVMNHGITAGG FT VYNAELGNGMGEFIEKYIFPGGELTHISSVLEAVTAGGLEAVDDENLRPHYARTLWAWS FT DALEACLPEAARILQGEQGERSLRAYRLYLAGCAMGFEHGWISLHQVLVTTPATGRTDE FT LDMARDLAYPWRRDYIYAGNAR" FT misc_feature complement(117451..117960) FT /note="HMMPfam hit to PF02353, DE FT Cyclopropane-fatty-acyl-phospholipid synthase, score FT 2.3e-58" FT CDS 118810..119976 FT /transl_table=11 FT /locus_tag="BB3370" FT /product="putative transmembrane transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2052" FT /db_xref="GOA:Q7WH40" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7WH40" FT /protein_id="CAE33862.1" FT /translation="MPGWLILMGALTAIGPFSIDMYLPAFPSIAAGLGVERGEVERTLA FT AYLIGMAGAQIIYGPLADRYGRKLPMMGGLILYVLASLGCALAGDIQTLTAWRVAQALG FT GAAGVVIPRAVIRDHYETQEAARAMSLLMLIMGLAPILAPLAGAQLLAFVGWRSLFWLM FT AAGGLALLLAVALTMKETLAPERVLPLRAGTILSNYRALLAHRGFMGHSLAGGMGQAGM FT FAYIVGSPRIFIELYGIAPQYYGLLFGANAAALIVGSQISARLLRKSAPATLQRRAQVA FT LAVASLSALALALLGLMSLPLLMACLMGYMFSQGFVNPNSAALALAEQGRRLGAASALL FT GTLQLSCGALAGLIISIWPAESVLPLAAVLAGSACLSWQFGRMARRPA" FT misc_feature 118810..118899 FT /note="Signal peptide predicted for BB3370 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.980) with cleavage site FT probability 0.969 between residues 30 and 31" FT misc_feature 118822..119922 FT /note="HMMPfam hit to PF00083, DE Sugar (and other) FT transporter, score 0.0078" FT misc_feature join(118828..118896,118939..118995,119032..119091, FT 119104..119157,119191..119259,119269..119337, FT 119428..119496,119524..119592,119653..119721, FT 119869..119937) FT /note="10 probable transmembrane helices predicted for FT BB3370 by TMHMM2.0 at aa 7-29, 44-62, 75-94, 99-116, FT 128-150, 154-176, 207-229, 239-261, 282-304 and 354-376" FT CDS 120346..120582 FT /transl_table=11 FT /gene="rpmB" FT /locus_tag="BB3371" FT /product="50S ribosomal protein L28" FT /note="ortholog of Bordetella pertussis (BX470248) BP2051" FT /db_xref="GOA:Q7WH39" FT /db_xref="InterPro:IPR001383" FT /db_xref="UniProtKB/Swiss-Prot:Q7WH39" FT /protein_id="CAE33863.1" FT /translation="MARVCQVTGKGPMVGNNVSHANNKTKRRFLPNLQSRRFWVESENR FT WVRLRVTAKAIRTIDKNGIDAVLADLRARGEAV" FT misc_feature 120352..120534 FT /note="HMMPfam hit to PF00830, DE Ribosomal L28 family, FT score 3e-34" FT CDS 120646..120813 FT /transl_table=11 FT /gene="rpmG" FT /locus_tag="BB3372" FT /product="50S ribosomal protein L33" FT /note="ortholog of Bordetella pertussis (BX470248) BP2050" FT /db_xref="GOA:Q7WH38" FT /db_xref="InterPro:IPR018264" FT /db_xref="UniProtKB/Swiss-Prot:Q7WH38" FT /protein_id="CAE33864.1" FT /translation="MAKGIREKIKLESTAGTGHFYTTTKNKRNMPEKMLIKKFDPVARK FT HVDYKETKLK" FT misc_feature 120661..120804 FT /note="HMMPfam hit to PF00471, DE Ribosomal protein L33, FT score 2e-18" FT CDS complement(120927..122822) FT /transl_table=11 FT /locus_tag="BB3373" FT /product="putative sulfate transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP2049" FT /db_xref="GOA:Q7WH37" FT /db_xref="InterPro:IPR011547" FT /db_xref="UniProtKB/TrEMBL:Q7WH37" FT /protein_id="CAE33865.1" FT /translation="MRVRGHGFTLAPFDATAGASGRGAGYKVNKMGKTVRGGAAAILGG FT WVNDITPGTLRADAQAGLLGALLVLPQGVAFAMLAGLPPEYGLYSAIVPCIVAALFGSS FT RHVLSGPTNANSLALFAVLAPLALPGSPGYIQMALAVTILVGVMQLAVGLLRLGSLANF FT ISPSALFGFTSGAALLIAVHALKDALGLEGVQAHSAGAVLAAVGSRLGEAHWGASAVAL FT TTIIVTLLVRHWDRRKPHMLAGLAAGTLLAAALNAGVFAAAGQPISVLGALAQPWPPFH FT VPAVQWSVLPDLVGVAVPLTIVALAQSISIAKAVAMRSGQLIDANREFIGQGLSNVVGG FT LFSSYLSCGSLNRSVPNYEAGARTPMAAVFAALLLVLLVLVSSPVLALIPHAAIAGLLI FT VVAWSLLDLPRWRVLVRIAPREALIAAATLAATVTIRMEIAILLGTLLSLTAYLYRTAR FT PAMRPMGFDAADPQRHFAVLEGQPGELPECPQLKLLRMEGSVYFGAATHVTDRLQALRA FT GASAGQRHLLVMSKSMNFIDHAGAQVWEEELRRRRAGGGDLYFHRPRPEVLRDWRRSGF FT IDRLGADHIFPDKATAIHTIYERLDPEICRGCTARIFTECGPPGTAHQPGAERDE" FT misc_feature complement(121047..121379) FT /note="HMMPfam hit to PF01740, DE STAS domain, score FT 1.7e-07" FT misc_feature complement(121236..121268) FT /note="PS00626 Regulator of chromosome condensation (RCC1) FT signature 2." FT misc_feature complement(121455..122369) FT /note="HMMPfam hit to PF00916, DE Sulfate transporter FT family, score 2.4e-59" FT misc_feature complement(join(121461..121520,121581..121649, FT 121659..121727,121905..121973,122031..122099, FT 122133..122186,122277..122345,122358..122426, FT 122574..122642)) FT /note="9 probable transmembrane helices predicted for FT BB3373 by TMHMM2.0 at aa 61-83, 133-155, 160-182, 213-230, FT 242-264, 284-306, 366-388, 392-414 and 435-454" FT CDS 123275..123613 FT /transl_table=11 FT /gene="bph2" FT /locus_tag="BB3374" FT /product="DNA-binding protein Bph2" FT /note="ortholog of Bordetella pertussis (BX470248) bph2" FT /db_xref="GOA:Q7WH36" FT /db_xref="HSSP:1EXE" FT /db_xref="InterPro:IPR000119" FT /db_xref="UniProtKB/TrEMBL:Q7WH36" FT /protein_id="CAE33866.1" FT /translation="MKKTAAAVRPIKEALNKSQLIAYLVENTGVEAKSVKAVLAGLESS FT VLASVDKKGAGEFTLPGLFKVAVQKVPAKAKRFGKDPFTGEERWFPAKPASVKVKVRPL FT KKLKDAAQ" FT misc_feature 123317..123601 FT /note="HMMPfam hit to PF00216, DE Bacterial DNA-binding FT protein, score 2.4e-13" FT CDS 123736..124248 FT /transl_table=11 FT /locus_tag="BB3375" FT /product="putative MarR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2046" FT /db_xref="GOA:Q7WH35" FT /db_xref="HSSP:1JGS" FT /db_xref="InterPro:IPR000835" FT /db_xref="UniProtKB/TrEMBL:Q7WH35" FT /protein_id="CAE33867.1" FT /translation="MKDHVDLVLSQWAHERPDLDVSSMAVLARIFRFNTAALRRIEPLF FT RAAGLHQGQFDLLATLYRAGAPHALSPQQLTAALLLSSGAMTHRLDQLEQGGLIARSPN FT PDDRRGVIVSLTPAGLRTIRQILADYLEAIDALLTPLSATERRQLAGLLKRLLAEHDRT FT TPGGIPQ" FT misc_feature 123883..124203 FT /note="HMMPfam hit to PF01047, DE MarR family, score FT 4.6e-28" FT CDS 124245..125450 FT /transl_table=11 FT /locus_tag="BB3376" FT /product="putative transmembrane transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2045" FT /db_xref="GOA:Q7WH34" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7WH34" FT /protein_id="CAE33868.1" FT /translation="MSPARARLTAPIVLLMSVATGLAVASNYYAQPLLHTIGAEFALTT FT ATAGAIVTVAQLSYAVGLILLVPLGDLYERRTLIALMTALSAVGLLLSAFSPGIGWLML FT GTAVTGLLSVVAQVLVPFAATLAEPHERGKVVGAVMSGLLLGILLARTIAGALADLGSW FT RTVYWVAAILMLLMSMALWRVLPRSVNPTRLSYPRLLASIVQLYAQEPLLRARSVLGAL FT LFAAFSMLWTPLTFLLSGPNYGYSNTTIGLFGLAGAIGAYGANRFGRLNDRGQGNRSTR FT QGLLLLLASWPLLAWGAHHVAPLLAGVLALDLAIQAVHVTNQSAIYRLRPEARSRLTAG FT YMTSYFLGGAAGSLLSAWIYAHAGWLGVTAAGALTSLAALLYGCLARSARIPETTPAPA FT IA" FT misc_feature 124245..124334 FT /note="Signal peptide predicted for BB3376 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.554 between residues 30 and 31" FT misc_feature 124269..125429 FT /note="HMMPfam hit to PF00083, DE Sugar (and other) FT transporter, score 0.0033" FT misc_feature join(124278..124346,124374..124442,124476..124529, FT 124542..124610,124647..124706,124734..124802, FT 124893..124961,124989..125048,125253..125321, FT 125331..125399) FT /note="10 probable transmembrane helices predicted for FT BB3376 by TMHMM2.0 at aa 12-34, 44-66, 78-95, 100-122, FT 135-154, 164-186, 217-239, 249-268, 337-359 and 363-385" FT misc_feature 125364..125396 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 125528..128185 FT /transl_table=11 FT /gene="leuS" FT /locus_tag="BB3377" FT /product="leucyl-tRNA synthetase" FT /EC_number="6.1.1.4" FT /note="ortholog of Bordetella pertussis (BX470248) BP2044" FT /db_xref="GOA:Q7WH33" FT /db_xref="InterPro:IPR013155" FT /db_xref="UniProtKB/Swiss-Prot:Q7WH33" FT /protein_id="CAE33869.1" FT /translation="MQERYQPNSVEAAAQQTWQARDAYLVHEHAKNPDGSEKPKFYACS FT MLPYPSGKLHMGHVRNYTINDMMARQLRMRGYNVLMPMGWDAFGMPAENAAIKSKVPPA FT KWTYDNIAYMKKQMKAMGLAIDWSREMCACDPKYYKWNQWLFLKMLEKGIAYRKTQVVN FT WDPVDQTVLANEQVIDGRGWRSGAPVEKREIPGYYLRITDYAEELLDQVSTNLPGWPER FT VRLMQENWIGKSEGLRFAFPHRIAGADGKLIQDGKLYVFTTRADTIMGVTFCAVAPEHP FT LATHAAQSNPALAAFVEQCKLGGTTEAEMATREKEGMPTGLTVTHPLTGAEIDVWVGNY FT VLMTYGDGAVMGVPAHDERDFAFARKYGLPIRQVVALEGKTYSTDAWQEWYGDKQAGRT FT VNSGKYDGLAYQAAVDTIAADLAAQGLGEKQTTWRLRDWGISRQRYWGTPIPIIHCADC FT GPVPVPEQDLPVVLPDDLIPDGSGNPLAKNEAFLSCSCPRCGKPARRETDTMDTFVDSS FT WYFMRYTSPDNDQAMVDARNDYWMPMDQYIGGIEHAVLHLLYARFWTKVMRDLGLLNFD FT EPFTKLLCQGMVLNHIYSRKTPQGGIEYFWPEEVDNVYDAKGAIVGAKLQRDGSEVNYG FT GVGTMSKSKNNGVDPQSLIDTLGADTARLFVMFASPPEQTLEWSDSGVEGANRFLRRLW FT ALGYAQREAVGRGLATGADWAQAPAPVKELRREVYGLLKQADYDYQRIQYNTVVSACMK FT MLNAIDDAPLPEGPAADAARAETLGLLLRVLYPVVPHITWHLWQDLGYAEHLGDLLDAP FT WPHVDEAALVADEIELMLQVNGKLRGSIRVAAKAPKEDIERIAAAQEEVARFLEGRPPK FT RVIVVPGKLVNVVG" FT misc_feature 125564..127564 FT /note="HMMPfam hit to PF00133, DE tRNA synthetases class I FT (I, L, M and V), score 1.3e-139" FT misc_feature 125669..125704 FT /note="PS00178 Aminoacyl-transfer RNA synthetases class-I FT signature." FT CDS 128201..128860 FT /transl_table=11 FT /locus_tag="BB3378" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2043" FT /db_xref="UniProtKB/TrEMBL:Q7WH32" FT /protein_id="CAE33870.1" FT /translation="MNFAGHFLHFPRLTWPRGIALAMLMLLAGCGFTMRGVTPLPFDTL FT YVGIPDNTRFGADVRRALRAASPNTRQVPTSKDAQAILQQVNTDRTLREVSLNAQGRVE FT EYELGIDYTFRLIDAKGNALVPDTTMSIYREMPYDDQVVQAKQGQIDALYQSMEKELVN FT RLLRRLTAPDVHEAAARAAAGTLDPDAPVYDPNQATPASQPSPWNTPNAYPGMDTP" FT misc_feature 128201..128305 FT /note="Signal peptide predicted for BB3378 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.804) with cleavage site FT probability 0.756 between residues 35 and 36" FT misc_feature 128237..128305 FT /note="1 probable transmembrane helix predicted for BB3378 FT by TMHMM2.0 at aa 13-35" FT misc_feature 128258..128290 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 128863..129918 FT /transl_table=11 FT /gene="holA" FT /locus_tag="BB3379" FT /product="putative DNA polymerase III, delta subunit" FT /EC_number="2.7.7.7" FT /note="ortholog of Bordetella pertussis (BX470248) BP2042" FT /db_xref="GOA:Q7WH31" FT /db_xref="HSSP:1JQJ" FT /db_xref="InterPro:IPR005790" FT /db_xref="UniProtKB/TrEMBL:Q7WH31" FT /protein_id="CAE33871.1" FT /translation="MAAPLDSDALASHLARAGGRLAPLYTVSGDEPLLVTEAADAIRAA FT ARAAGYTERTSMVMDARSDWSAVAAATQSVSLFGDRRLLELKIPTGKPGKSGGEMLARL FT ADQARDQADADTLVVVALPRLDKATRESKWAQALARGGVMADIANVERGRLPAWIGMRL FT GRQNQRADTATLQWMADKVEGNLLAAHQEIQKLGLLYPEGQLAAEDVERAVLNVARYDV FT FGLRDAMLAGDTARTVRMLDGLRAEGEALPLVLWAVGEEIRLLARVAQARQQGQDAGAL FT MRRLRIFGAHERLALQALGRVAPGAWPAAVQHAHEVDRLIKGLSVPGRLADPWEEMTRL FT ALRVAAAGARP" FT CDS 130040..131299 FT /transl_table=11 FT /gene="proA" FT /locus_tag="BB3380" FT /product="putative gamma-glutamyl phosphate reductase" FT /EC_number="1.2.1.41" FT /note="ortholog of Bordetella pertussis (BX470248) BP2041" FT /db_xref="GOA:Q7WH30" FT /db_xref="InterPro:IPR012134" FT /db_xref="UniProtKB/Swiss-Prot:Q7WH30" FT /protein_id="CAE33872.1" FT /translation="MSSIETYMQSVGEQARTASRAMMRATGAAKNQALLAMAEAILAQR FT AELQAANAKDVAAARANGLEAALLDRLTLSDRSIALMAEGLRQIAALPDPVGSITATSV FT RPNGMRVAQMRVPLGVIGIIYESRPNVTIDAAALCLKSGNATILRGGSEALHSNVALGR FT IVQAGLQAAGLPTAAVQVIDTTDRAAVGKLVTMTEHVDVIVPRGGKGLISRLAQEARVP FT LIKHLDGNCHVYVDAAADLAKAHDIAFNAKTYRYGVCGAMETLLVHADVAQRLLPVLGQ FT ALHEHGVELRGCARALQWLPEGKPADDADWATEYLGPVLAVRVVDTIDEAMDHIARWGS FT GHTDAIVTENLSAAQRFQREVDSSSVYVNLPTCFADGFEYGLGAEIGISTNRLHARGPV FT GLEGLTTLKWVLNGEGQVRG" FT misc_feature 130040..131281 FT /note="HMMPfam hit to PF00171, DE Aldehyde dehydrogenase FT family, score 1e-06" FT CDS 131296..131691 FT /transl_table=11 FT /locus_tag="BB3381" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2040" FT /db_xref="UniProtKB/TrEMBL:Q7WH29" FT /protein_id="CAE33873.1" FT /translation="MMQAGMYSQTVTFLFSLFVLCFITCTISGLVLFLFKARRANEELR FT HPLLQHRPFKQYPFAIQASIMLDYFLRLAFPRTKWWLIGHANKQLAHVDPKRVPLDVKW FT PIIGFWGACWLGLLAMISLWAMLLLGM" FT misc_feature join(131332..131400,131611..131679) FT /note="2 probable transmembrane helices predicted for FT BB3381 by TMHMM2.0 at aa 13-35 and 106-128" FT CDS complement(131714..133108) FT /transl_table=11 FT /locus_tag="BB3382" FT /product="putative amidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2039" FT /db_xref="GOA:Q7WH28" FT /db_xref="InterPro:IPR000120" FT /db_xref="UniProtKB/TrEMBL:Q7WH28" FT /protein_id="CAE33874.1" FT /translation="MSQLWRMSASDLAQAIRAREVSARAAAEAALRRLDEVNPRLNAVV FT DWRPDEVLAQADEIDAALARGDDPGPLAGVPVTVKINIDQAGFATSNGVALQKDVIAQA FT NSPVVDNLRRAGAVILGRTNAPAFSLRWFTSNLLHGRTLNPRNAALTPGGSSGGAASAV FT AAGIGQLAHGTDIAGSIRYPAYACGVHGLRPSLGRVAAYNAALPERSLGGQITAVSGPL FT ARTVADLRLGLAAMAARDARDPWWMPVPLEGPPAPRRAALCVSPDGLETQPAVCAALYE FT AAARLRDAGWQVEETGAIPPLQEAADLQIRMWLADGYEALLRAAQQEGDPGALVALRGQ FT QEAARALDLPGYTATLTRRATLTRLWQLFFEDYPVLLLPVSAEPPFADDLDLQGADAYR FT RVWRAQLTQVGLPFMGLPGLALAMPGVGAAPLGVQVVAARFREDLCLAAGADIEARGAP FT VTLAGP" FT misc_feature complement(131771..133036) FT /note="HMMPfam hit to PF01425, DE Amidase, score 2.9e-64" FT misc_feature complement(132557..132652) FT /note="PS00571 Amidases signature." FT CDS 133290..134258 FT /transl_table=11 FT /locus_tag="BB3383" FT /product="putative hydroxlacyl-CoA dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2038" FT /db_xref="GOA:Q7WH27" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7WH27" FT /protein_id="CAE33875.1" FT /translation="MNPPEHVVSPPIARVAVVGAGTIGASWAALFAARGLRVTVTDPAP FT GAAESLRGRIADIWPALAAAGAIQDGADPGAVRFDADLQEALQDADFVQESAPERPDFK FT ADLFTRMDAALPPHAIIASSSSGLPMSALQAGCRHPERCVIGHPFNPPHLIPLVEVVAG FT RQTAPAAIERAMAFYRSLGKYPIRIDKEIPGHVANRLQAALWREAIHLVAEGVASVADI FT DAAVTQGPGLRWALYGPHMTFHLGGGEGGLAHFLDHLRGPVQTWWDDLGKPELTPALQR FT KLIQGVAAEAGQCSIAELSATRDAQLTAILAILRQQGSPHP" FT misc_feature 133314..133865 FT /note="HMMPfam hit to PF02737, DE 3-hydroxyacyl-CoA FT dehydrogenase, NAD binding domain, score 1.4e-37" FT misc_feature 133869..134159 FT /note="HMMPfam hit to PF00725, DE 3-hydroxyacyl-CoA FT dehydrogenase, C-terminal domain, score 4.4e-15" FT CDS 134255..134527 FT /transl_table=11 FT /locus_tag="BB3384" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2037" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:Q7WH26" FT /protein_id="CAE33876.1" FT /translation="MSDIAHRETQSRFETTVDGQRCELDYVLRDHIMTIVHTGVPAPVG FT GRGIAAELTRAALDTARQRGWKVVPQCSYAAVYLKRHPEYQDLQA" FT CDS 134641..135042 FT /transl_table=11 FT /locus_tag="BB3385" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2036" FT /db_xref="UniProtKB/Swiss-Prot:Q7WH25" FT /protein_id="CAE33877.1" FT /translation="MKKHPSSPAACPCGKPRAYPDCCGRWHAGALFLQAPDAESLMRSR FT YSAFVLDQLDYLLQTWHPDTRPSELEPNAADVKWLGLQIKASQQQDDTHATVEFVARLR FT QAGRATRLHELSRFVKEEQRWYYVDGDIR" FT rRNA complement(135541..135655) FT /note="5S rRNA" FT rRNA complement(135830..138711) FT /note="23S rRNA" FT tRNA complement(139034..139109) FT /note="tRNA Ala anticodon TGC, Cove score 88.49" FT tRNA complement(139130..139206) FT /note="tRNA Ile anticodon GAT, Cove score 93.29" FT rRNA complement(139304..140835) FT /note="16S rRNA" FT CDS 141583..143046 FT /transl_table=11 FT /locus_tag="BB3386" FT /product="putative ribonuclease" FT /note="ortholog of Bordetella pertussis (BX470248) BP2317" FT /db_xref="GOA:Q7WH24" FT /db_xref="InterPro:IPR019307" FT /db_xref="UniProtKB/TrEMBL:Q7WH24" FT /protein_id="CAE33878.1" FT /translation="MTEDILINVTPFETRVALVEQGAVQELHVERSVQRGHVGNIYLGR FT VVRVLPGMQSAFIDIGLERAAFIHIADLRENRSERSQGQTPTPIEKLLFEGQTLMVQVI FT KDPLGTKGARLSTQISIAGRMLVYLPHDPHIGISQKIDSESERTQLRERLQALMPPEEK FT GGFIVRTQAEGATDEEIAADLEYLRKLWASVQAAARSQPAPTALHQDLTLGQRVLRDMV FT GPHTGTILVDSRSTSSALQEWARVYTPSVAERIRHYSGERPLFDTANVDEEIARALSRR FT VDLKSGGYLIVDQTEALTTVDVNTGGFVGGRNFDDTIFKTNLEAAQAIARQLRLRNLGG FT IVILDFIDMEDPDHRETVLAELKKALSRDRTRMTVNGFTQLGLVEMTRKRTRDSLAHQL FT CEPCPMCQSRGNVRTARTVCYEILREILREARQFNPREFRILAAQGVVDLFLEEESQHL FT AMLGDFVGKQISLEVESQYSQEQYDIILI" FT misc_feature 141685..141936 FT /note="HMMPfam hit to PF00575, DE S1 RNA binding domain, FT score 2.6e-08" FT CDS complement(143080..143982) FT /transl_table=11 FT /locus_tag="BB3387" FT /product="putative dehydratase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2318" FT /db_xref="GOA:Q7WH23" FT /db_xref="InterPro:IPR001086" FT /db_xref="UniProtKB/TrEMBL:Q7WH23" FT /protein_id="CAE33879.1" FT /translation="MSRRPAGAARGSDAIGITRAVAGPAALTATQSPAMAARTAYLGPA FT GSWTHQACLDLYGADGLVPLSREALFAAYADGKVERACVPVATSVVGLTPYMEDVLALP FT RVVVVAEYPKMLGYSLLARPGTRREDIKEVHAHPVAFEEVRPWLEREMPGARRVPAASG FT GAAAQAVAASATQDKASFGPRVGASVYQLVSLADGIEEGPHNVTRWWVLGRDMPAPTGK FT DKTSLLACIPDARLAPLLADFAQAGVPILTIYERPARKTLDAHRYVVEVAGHVRDDALA FT GLLARQGELRVLGSYPRRY" FT misc_feature complement(143332..143868) FT /note="HMMPfam hit to PF00800, DE Prephenate dehydratase, FT score 2.3e-21" FT misc_feature complement(143875..143982) FT /note="Signal peptide predicted for BB3387 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.702) with cleavage site FT probability 0.591 between residues 36 and 37" FT CDS complement(143979..144524) FT /transl_table=11 FT /locus_tag="BB3388" FT /product="putative transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2319" FT /db_xref="GOA:Q7WH22" FT /db_xref="InterPro:IPR012287" FT /db_xref="UniProtKB/TrEMBL:Q7WH22" FT /protein_id="CAE33880.1" FT /translation="MGRKRSIDRDKVLDAAETIVVRDGAKGLTIDAVAREMGVTKGGIQ FT YCYGSKDAMIEALFERWDKAYETLFQAVLGEDASPRGRVRAHAEATRRADATSNAKAAS FT LLAALIQAPELLGSTRSWYRSRLDGLDVDTEAGRRARLAVLATEGAFLLRFFGLMEMDE FT SEWQAIFRDIRAVLVDAP" FT misc_feature complement(144120..144146) FT /note="PS01095 Chitinases family 18 active site." FT misc_feature complement(144351..144491) FT /note="HMMPfam hit to PF00440, DE Bacterial regulatory FT proteins, tetR family, score 1e-07" FT CDS 144608..146107 FT /transl_table=11 FT /locus_tag="BB3389" FT /product="putative inner membrane efflux protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2320" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7WH21" FT /protein_id="CAE33881.1" FT /translation="MRPQNRWLVLAIIASALFLITVDTTVLYAALPRLTHDLHASAAEK FT LWIINAYPLVVTGLLPAMGALSDRWGPRATFTSGLAAFGAASLCVAYAPSATLLIVARG FT LLAIGAALMMPATLAILRHVFTDARERALAIGVWAAIASGGAALGPVVGGVLLEYFWWG FT SVFLINVPVVLALLWPAWRLVPAGRPAAHRPWDLGAAVLIMTALLGLVFGLKELGKPTP FT DYGVAMLAVAVGAVAMTLFARRQRGQAEPMIDVGMFRDAGFSRGVAVALIAMLTLVGVE FT LVLSQRLQLVQGMTPLQAALLLLPVPLAAAAAGPLAGLWLGRAGERRVMGTALALAGLG FT AAGMVVGTEWPLAGQMAVLALLGAGLGGAMTAASTAVMLHAPADRASMAASIEEVAYEL FT GSVLGVTLFGSIMTTVYTRTLVLPADAPAAAQLRDSLDQALAAAETMAPQWAQQVLPMA FT YQAFDHAYAVVAATAAALLAGAALLTQARRRGPQSSRNCML" FT misc_feature 144608..144694 FT /note="Signal peptide predicted for BB3389 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.968 between residues 29 and 30" FT misc_feature join(144626..144694,144737..144805,144842..144910, FT 144923..144982,145001..145069,145082..145150, FT 145187..145249,145277..145333,145394..145462, FT 145505..145573,145592..145645,145673..145741, FT 145802..145870,145997..146056) FT /note="14 probable transmembrane helices predicted for FT BB3389 by TMHMM2.0 at aa 7-29, 44-66, 79-101, 106-125, FT 132-154, 159-181, 194-214, 224-242, 263-285, 300-322, FT 329-346, 356-378, 399-421 and 464-483" FT CDS complement(146080..147855) FT /transl_table=11 FT /locus_tag="BB3390" FT /product="putative ABC transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP2321" FT /db_xref="GOA:Q7WH20" FT /db_xref="HSSP:1MV5" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/Swiss-Prot:Q7WH20" FT /protein_id="CAE33882.1" FT /translation="MNSAARNAPAGSQPVKAELWKRVYSRVGSYWKGLVLAVLLMAGAA FT ATQPTLAVIMKPLLDDGFSGAKPHYVWFLPLAVVGLILLRGICNFFSDYLLAWVANNVL FT RGIRGEMFERLLGLPDADFKRGDTGRLLNRFTIDAGNVTGYATDVITVLVRETLVVIAL FT IGVLLYMSWALTLIILVMLPVSVGIARAFTRRLRRINRETVNMNAELTRVVSEGIDGQR FT VIKLFDGYDAERRRFDFVNSRLRRFAMRSATADAALTPLTQVCISVAVGAVIAVALSQA FT NSGALTVGSFASFMAALAQIFDPIKRLTNLAGKMQKMLVAAESVFTLVDQTPEADAGTR FT ALPEPVRGKVEFRAVSHRFPDADRDTVSAVSFLVEPGQTVALVGRSGSGKTTLVNMLPR FT FVLPDGGDILFDDVPIQDLTLRSLRSHLSLVSQDVVLFDDTIAANVGYGAGGTVDDARV FT RDALAAANLLEFVDGLPLGIHTPVGQNAARLSGGQRQRLAIARALIKNAPVLILDEATS FT ALDNESERQVQASLERLMRGRTTLVIAHRLSTVQNADRIIVLDAGKIVEHGPHSELLAA FT NGLYASLYNMQFRED" FT misc_feature complement(146170..146727) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 2.1e-57" FT misc_feature complement(146347..146391) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(146683..146706) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(146941..147756) FT /note="HMMPfam hit to PF00664, DE ABC transporter FT transmembrane region, score 2.9e-41" FT misc_feature complement(join(146950..147003,147022..147090, FT 147316..147384,147580..147648,147691..147759)) FT /note="5 probable transmembrane helices predicted for FT BB3390 by TMHMM2.0 at aa 33-55, 70-92, 158-180, 256-278 and FT 285-302" FT CDS 147967..148932 FT /transl_table=11 FT /gene="waaF" FT /locus_tag="BB3391" FT /product="heptosyltransferase II" FT /note="ortholog of Bordetella pertussis (BX470248) BP2322" FT /db_xref="GOA:Q7WH19" FT /db_xref="InterPro:IPR002201" FT /db_xref="UniProtKB/TrEMBL:Q7WH19" FT /protein_id="CAE33883.1" FT /translation="MTTISCIYVRLPNWIGDVCMSLPSLRTLQDSGAPLVVCARPWARD FT LLAGVPKQDFLPMTGKVLRDRATVAAHRRALGGGAATRGLLLPDSLSSAAVFRLAGIPC FT AGYRDDGRSPLLRWPVDKPGASLHAVQSWHYLTRAALQRWGLPAGPVEPGALLDLPLTQ FT AHRDAAGQLLQAQQLAGRPFVLIAPTATGLHKGKVKVWPGFDALTRALQERGQTVVMCP FT PPAEVAEARRNAPSATLLPPLGLGAFAALAQRAALVVCNDSGVSHVAAAVDARQLTLFG FT VTRPGRTGPWSPRAVCLGSETRWPGPEQVMEKSLELLSGA" FT misc_feature 148171..148923 FT /note="HMMPfam hit to PF01075, DE Glycosyltransferase FT family 9 (heptosyltransferase), score 2e-91" FT CDS 148945..149709 FT /transl_table=11 FT /locus_tag="BB3392" FT /product="conserved hypothetical membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2323" FT /db_xref="InterPro:IPR003848" FT /db_xref="UniProtKB/TrEMBL:Q7WH18" FT /protein_id="CAE33884.1" FT /translation="MAISSFLTNLIIPLNLCLTLVVLGLVLGLFRLRKTGAALIAGGLL FT WALAWSLPATSLWLGGALESRYPHLPPDQSPTADAIVVLGGNTANGRANWFLPYDKETA FT VVRVDTATELFQAGRAPKVVLSGGALEGDISEARGMAYRMRQHGVPESALILENASRTT FT YENAALTEDTLRQHGIQKVLLVTSALHMPRAMAAFSKQGVQAIAAPAPPQIVAPADGSL FT SPWLPDQRSFDASRSIIKEYAGLFVYWLRGWV" FT misc_feature 148960..149700 FT /note="HMMPfam hit to PF02698, DE Uncharacterized ACR, FT COG1434, score 7e-40" FT misc_feature join(148972..149040,149059..149127) FT /note="2 probable transmembrane helices predicted for FT BB3392 by TMHMM2.0 at aa 10-32 and 39-61" FT CDS 149714..149986 FT /transl_table=11 FT /locus_tag="BB3393" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2324" FT /db_xref="InterPro:IPR005358" FT /db_xref="UniProtKB/TrEMBL:Q7WH17" FT /protein_id="CAE33885.1" FT /translation="MSATLSCRPGCGACCIAPSISSPIPGMPQGKPAGSRCVQLDDDMR FT CRIFGHPDRPDVCSSLQPSTELCADDREQAMTWLLKLEELTLPAR" FT misc_feature 149726..149971 FT /note="HMMPfam hit to PF03692, DE Uncharacterised protein FT family (UPF0153), score 3.7e-49" FT CDS complement(150111..151232) FT /transl_table=11 FT /locus_tag="BB3394" FT /product="putative transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2325" FT /db_xref="GOA:Q7WH16" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7WH16" FT /protein_id="CAE33886.1" FT /translation="MRIALLVDRFGNRFGGAEAYGVELMRILARRHDVTVVAREYDSDL FT ALPFLPVRVSCRLPSWLRVLYFAWRAARLTRAGFDIVHSHMNGGAGDVQVMHVTPVRYN FT WLCRPGLRRRLTAWTSPRVATYLALEKARVAQRPGKRVVAVSELIVEQMRDAYGVGLPM FT ETIPPGVQLPAPSDPARRAATRAALGWGEDDLVCLLVARNPLRKGLPALLAALAHLPAR FT YRLLVVGADGPARQCVGDSGLADGRVRLVDPTPGVAPYYEAADIYVHPTLNDSYGMAPL FT EAMSHGLPVVVSSADYCGFAQYLADGRDALILRDPRDGAEVARAVAAIGDGAPLRAALS FT AAGLALARAQSWEAVAARYETLYETLLRERAAG" FT misc_feature complement(150195..150695) FT /note="HMMPfam hit to PF00534, DE Glycosyl transferases FT group 1, score 6.5e-11" FT CDS complement(151240..151965) FT /transl_table=11 FT /locus_tag="BB3395" FT /product="putative polysaccharide deacetylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2326" FT /db_xref="GOA:Q7WH15" FT /db_xref="InterPro:IPR002509" FT /db_xref="UniProtKB/TrEMBL:Q7WH15" FT /protein_id="CAE33887.1" FT /translation="MPIPILMYHQIGEPAPRGTPYRGLTVHPASFRRQMTWLRRFGYRG FT LSMRDLMPYVRGERSGKVFGITFDDGYRNVHRNAMPVLGELGFTATNYFVAHQLDGGNV FT WDLEKGIPFSALMNAQEMREWHQAGNEVGSHTLDHVHLPRMAADEARRQICQSKDELEQ FT VLGAPVTAFCYPYGDHTDEHRAMAREAGYDNATLTVRGLASAADDPYGLPRVTVSRSTH FT LLRFLQKTLTGYEDRRRRG" FT misc_feature complement(151288..151788) FT /note="HMMPfam hit to PF01522, DE Polysaccharide FT deacetylase, score 1.1e-06" FT CDS 152330..153946 FT /transl_table=11 FT /locus_tag="BB3396" FT /product="putative outer membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2327" FT /db_xref="GOA:Q7WH14" FT /db_xref="InterPro:IPR000917" FT /db_xref="UniProtKB/TrEMBL:Q7WH14" FT /protein_id="CAE33888.1" FT /translation="MTRFLQAWVPLLVAGIAPIWIQARLHGDSFSPRVYLLGVTLMLAC FT ALLWRRAWTRPAAVLLCTGLAANLGLAQFCYQAYGQRFNFGFAYSILTTNYDETVQLLT FT QHWRSAALTLAVLALLLWVVRRAAHELPTRWLALGAAATALVFFGSWLRYELAMRGAAD FT EYYPSIERTVSRSPMFNMRYFIQASYDQSLLDTAGRHRVTHALTRRDTGIDTYVVVVGE FT SARRANWGLYGYARDTTPRAAAERDRMTLYTQAAAPAPLTIMAVPLTLSAATVDSYDPR FT LFGDNVVALAGDAGFRTYWLSNQARLGRYDTPVTAMANMAHFKTWADAPYDEALLPLLD FT AALAEPGRKVVFLHINGNHDNYCTRYPETATVYQGGAPYEDCYDNSIRYVDALLGAVMD FT RLRERRASLLFYPDHGLERHESVLGTFYHGGVRPSREAFDIPMFIWNSPAAPAPARREY FT DAPYSTEDNYGLILDWLGVATGVDDCKHRPAAPACAGRPVRVIDAKRDVYAYADLAPHP FT DGRRPATPPRVGPRDQALNVR" FT misc_feature 152336..153796 FT /note="HMMPfam hit to PF02418, DE Integral membrane protein FT of unknown function, score 2.1e-46" FT misc_feature join(152348..152401,152429..152488,152501..152569, FT 152645..152698,152732..152785) FT /note="5 probable transmembrane helices predicted for FT BB3396 by TMHMM2.0 at aa 7-24, 34-53, 58-80, 106-123 and FT 135-152" FT CDS complement(153925..155037) FT /transl_table=11 FT /locus_tag="BB3397" FT /product="putative transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2328" FT /db_xref="GOA:Q7WH13" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7WH13" FT /protein_id="CAE33889.1" FT /translation="MKILYTNFHGRNGGGHVTYVINLARALAPGHALTVAVPGTSRLYR FT YAREIPGVEVVDMQYTTRLSSWFHDRAALRRLIAEGGYDIIHCNGSADHKQVMLATLGL FT RRRPRIVFTKHNDHPLGSLGNRLRATLATDHSIAVSAYVHGLLADSPYSRHPITTVRHG FT IDTDYYAPPDAATAAQWRERYFGPDWRGRLLLGSAGGTDYDKGWLDLVAAAGSLPAPLR FT ERVRILVAGDPPNQAKLDRVREHGMQDQMVFPGLLDDVREALGACDAGYVLSYREALSF FT ACREMMALGRPVLASNAGGLPENITAGRDGWVVPVRDVPAIAAVLREMLEQPERLAEMG FT RQARATAEREFGLRDFAQATLAVYQRTLSA" FT misc_feature complement(154000..154506) FT /note="HMMPfam hit to PF00534, DE Glycosyl transferases FT group 1, score 1.9e-21" FT misc_feature complement(154966..154992) FT /note="PS00729 AP endonucleases family 2 signature 1." FT CDS complement(155034..155786) FT /transl_table=11 FT /locus_tag="BB3398" FT /product="putative transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2329" FT /db_xref="GOA:Q7WH12" FT /db_xref="InterPro:IPR001969" FT /db_xref="UniProtKB/TrEMBL:Q7WH12" FT /protein_id="CAE33890.1" FT /translation="MTLSVIIITKNEAANILACLESVAFADEFIVVDSGSTDNTVELAR FT DFGARVEVTPDWPGFGPQKNRALDLATGDWVLSIDADERVTPELASEIQAAMAGATADC FT YEIARLSDFCGRFIRHSGWWPDYVLRLFRRGSARFTDAAVHERVVPAQGQPARLRGHFL FT HYPYNNFDALIAKVNRYSSDAAAMMHARGKRATVFSALGHGFWTFVRIYLIRRGFLDGR FT HGLVLAVTAAAGSFFRYAKLMFLSEPRK" FT misc_feature complement(join(155049..155117,155145..155204)) FT /note="2 probable transmembrane helices predicted for FT BB3398 by TMHMM2.0 at aa 195-214 and 224-246" FT misc_feature complement(155328..155777) FT /note="HMMPfam hit to PF00535, DE Glycosyl transferase, FT score 5.5e-23" FT misc_feature complement(155664..155699) FT /note="PS00141 Eukaryotic and viral aspartyl proteases FT active site." FT CDS complement(155783..156634) FT /transl_table=11 FT /locus_tag="BB3399" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2330" FT /db_xref="GOA:Q7WH11" FT /db_xref="InterPro:IPR002509" FT /db_xref="UniProtKB/TrEMBL:Q7WH11" FT /protein_id="CAE33891.1" FT /translation="MRNAPNVPVLMYHHVTPAGGMIAATPEVFERQIAALARAGYRSLG FT TAEFAAYLDGAPVPEKSVLITFDDGYLNNWVYAHPILQRHGMKAVLFLITGLLGDGPAR FT PCAGQDGPLPPAPDHDESKRLIAAGRADEVMLRWSEVQAMLAAGTFEVHSHTHTHTRWD FT KQCGPDVAAKRAHIAQELADSRRALQARLGEVSDHLCWPQGYFDADYVQAARDAGFRHL FT YTTDALGQNVPGGDPAHIYRFAVRNRAGGWLNRRIWLARHPWIGPRYHAWKAWKKKLRR FT RA" FT CDS complement(156627..157730) FT /transl_table=11 FT /locus_tag="BB3400" FT /product="putative transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2331" FT /db_xref="GOA:Q7WH10" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7WH10" FT /protein_id="CAE33892.1" FT /translation="MRPLRIVHSEAATSFGGQEGRIFKEMTAMRERGHHMEAICQPQAQ FT LARRLAEAGFTVHTLEMDGPRNYLRGVLSLRRLLRQGRYDVLNTHSRRDTVIAAAAGRL FT AGTPLIVRTRHLSNKVGSLWSYTGLPHRVTTVSDHVRQHLIERGVPAGHIATVYSPIVL FT PPPIEHSTLRGELGLAADDIVVGCVAVMRATKGHRELIDAMRPLMAERANLHLVFVGGG FT SPVFEQTQAYVAELGLQARIHLMGTRNDVPNLLAGFDLFALATRQEASGTVYVEAEACG FT LPVVGTDVGGVSEMMRDGETGILVPVDDPAALGAALRRLIDDRALRRRMGEAGRRMVRD FT EKVFAPERLAERTEAIYRQWLAERGHA" FT misc_feature complement(156720..157229) FT /note="HMMPfam hit to PF00534, DE Glycosyl transferases FT group 1, score 4e-41" FT CDS complement(157730..161221) FT /transl_table=11 FT /gene="dnaE" FT /gene_synonym="polC" FT /locus_tag="BB3401" FT /product="DNA polymerase III alpha subunit" FT /EC_number="2.7.7.7" FT /note="ortholog of Bordetella pertussis (BX470248) BP2332" FT /db_xref="GOA:Q7WH09" FT /db_xref="InterPro:IPR004365" FT /db_xref="UniProtKB/TrEMBL:Q7WH09" FT /protein_id="CAE33893.1" FT /translation="MSEAVTNPPPFVHLRVHSEFSVSDGIVRISDLIKRVAKLGQPAVA FT LTDLSNIFGLIKFYKGARGAGVKPVAGSDVWLTNDDDREKPFRLLLLVRNHQGYLNLCE FT LLTRSFLENQYKGRAEVRREWLQGQEGLIVLSGARGGDVGQALEAGNAVTALSLARQWG FT QLFPGSYYIELQRAGFDGDETYTQAAMRLAAEAGLPVVATHPVQFLDRDEFQAHEARVC FT IAEGEILANPRRVRRYTQDQYLLSSEEMARRFADVPSALANTVEIARRCNLTLVLGKPR FT LPNFPTPDGVTLDDYLVQLSEEGLEKRLQFLFPDEAERNAKRDQYYERLRWECKTIIQM FT GFPGYFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNP FT ERVSMPDFDIDFCQDNRERVIDYVKMKYGREAVSQIATFGTLGAKAVVRDAGRVLDMPY FT LFCDALSKLIPFNPADPWTLERTLKDEPAFKDRYEQEEEVRALVDLARPLEGLTRSIGM FT HAGGVLIAPGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWA FT VRFVRQFNADKRDFDVMALSLDDQAAYKVLCDANTTAVFQLESRGMKELLKKLRPSTFE FT DIIAMLALYRPGPLESGMVDDFVNRKHGRAAVDYFHPDLEGTLRSTYGVIVYQEQVMLI FT SQIIGGYSLGGADLLRRAMGKKKPEEMAKHRELFEQGAREKGHDPDLAVKLFDLMEKFA FT GYGFNKSHSAAYALIAYQTAWLKAYHPTEFLAATLSSDMDDTDKVQIFVRDAQDNGVEV FT LPPDVNASGYRFEPVADKHTEQGKPPRTMRYGLGAVKGTGQGAVEEILRARQEGGPFAN FT LFDFCRRVSKHAVNRRTIEALIKAGAFDTIEPNRAAMLASVGTAMEAAEQAARSANQSS FT LFGDDSGDVVAGELTKVAPWNLHTTLTEEKTALGYYFSGHLFDAWRDEVRRIVPMQLAR FT LEPQRDLQWMCGVLAGVRTMMTRRGKMVFAVLDDGTAQIEISVFNELYEKHRGRLREDQ FT LLVVQGKVSNDEYSGGMRIVAEQLYDLQLAREARAKSLRIRLNGQADAARLRQLLNPFR FT AEPENGVPGVPVDVVYRRNNFLCTVRLGEDWRVRMADTLLENLNDWAKPDGVEVTY" FT misc_feature complement(157997..158233) FT /note="HMMPfam hit to PF01336, DE OB-fold nucleic acid FT binding domain, score 2.2e-12" FT misc_feature complement(160580..160969) FT /note="HMMPfam hit to PF02811, DE PHP domain C-terminal FT region, score 7.8e-11" FT misc_feature complement(160991..161188) FT /note="HMMPfam hit to PF02231, DE PHP domain N-terminal FT region, score 2.2e-19" FT CDS 161332..162258 FT /transl_table=11 FT /locus_tag="BB3402" FT /product="putative dioxygenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2333" FT /db_xref="GOA:Q7WH08" FT /db_xref="InterPro:IPR007803" FT /db_xref="UniProtKB/TrEMBL:Q7WH08" FT /protein_id="CAE33894.1" FT /translation="MPQRRPLRTMKWLIPGLWLASILFAHFRGRVRLSLSRQMLDHSVL FT LAPVNAFMVLTSRVPTTPYLTTSEIPELKVLDDNWETIRDEALKMAELRRIKAAERHDD FT IGFNSFFKYGWKRFYLKWYDARHPSAEELCPKTVAILKSLPKVKAAMFAELPPGGKLNP FT HRDPFSGSLRYHLGLATPNDDRCYIAVDGESYSWRDGESVVFDETYVHEAHNKSEGNRI FT ILFCDVERPLKWRWAEAFNRWFGRVVMSAASSPNDAGDQTGAINKLTHAHWVIDQKRKQ FT FKAWNRTVYKATKWGLIALVAIGFLAL" FT misc_feature 161365..161418 FT /note="1 probable transmembrane helix predicted for BB3402 FT by TMHMM2.0 at aa 12-29" FT CDS complement(162391..166275) FT /transl_table=11 FT /locus_tag="BB3403" FT /product="putative ATP-dependent helicase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2334" FT /db_xref="GOA:Q7WH07" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WH07" FT /protein_id="CAE33895.1" FT /translation="MPEASRPPERAAAARSEPRPERPIPAISYPEDLPVSARRQEIARA FT IAAHQVVIVSGETGSGKTTQLPKICLELGRGRRKMIGHTQPRRLAATSVAKRIAEELRT FT PMGEVVGYQVRFNDRTGPNASIKLMTDGILLAESQRDPLLRRYDTIIIDEAHERSLNID FT FLLGYLKQLLPRRPDLKVIITSATIDAERFARHFAAGPERPAPVIEVSGRLYPVEVRYR FT PVQPPMSDEAAAAPAKGGRERSAGDEERDLIDAIVDAVDECARHGPGDVLVFLPGEREI FT RESAEALRKRHPVGTEVLPLYARLSQAEQEQIFHPRGNARRVVLATNVAETSLTVPGIR FT FVVDSGLARVKRYSWRNKVEQLRIEPVSRASANQRAGRCGRIGPGLCIRLYDETDFNAR FT APFTDPEVLRSSLASVILRMKSLKLDDIEQFPFVEAPPGRAVADGYHLLQELGAIELAG FT DGEAAEAGGGGAAFRLTRTGQELAKLPVDPRIGRMILAAREQQCLAEMLIIAAALSVQD FT PRDRPMAEREAAESAHAKFADDKSEFLSFLKLWRWYGEQVQHKASQRKLVALLRQNFLS FT PVRLREWHDVHTQLAALVGEQGWRLNQSEATYEQLHMALLSGLLGNIGFKGEEGGQYHG FT AREIRFHIHPGSRLVKKAGRWIVAAELVETTRLYARCVARIEPVWLERAAAHLLRRNWS FT DPRWEKKAGQVVANERATLYGLLVYNGRRVHYGRINPQHARELFIRQALVPGEIDTRLP FT FVAHNRKLIAGIEKLEHQTRRPDILVDDELIYAFYDRQLPADISQTASLEKWVNGLDKA FT AAARLLLTRDELMRHEAAGVTTDVFPKKVEWQGVAMPLDYHFEPGSPRDGVTLSVPLFA FT LNQLDAQRCEWLVPGMLKEKAHLLLKSLPQKLRRHCVPLPDYAAGFYERWYERQADPQQ FT GLVDALIADMWDQVQVRPAPGDFKLETLPAHLFMNFKVVDEHGRMLAAGRNLAQLKAEL FT GKQAQATFQQLAARDSDVAQALAHENLTSWSFGPLPEIMEIKRGGQSVIGYPALVDRGA FT HCDLDVFDDPDEARRHHRAGLLRLFRLALREQVKFLEKNLADLTKMSMLYMALGTQEEL FT RDQIIDCALAQACLAEPWPVNEQQFEARRQEGKGRLGLLAQEVARMAHAILAEYGALQR FT KLPQARPHAAAYADLQQQLGVLMPKWFVRDTPYAQLAHYPRYLKAAVARIDKLRADPAR FT DARLMGEMAPILTQYQRARSALKGAPDPRLDEFRWLLEELRVALFAQELRTPMPVSVKR FT LMKAWESLRR" FT misc_feature complement(165127..165393) FT /note="HMMPfam hit to PF00271, DE Helicase conserved FT C-terminal domain, score 8.2e-16" FT misc_feature complement(166087..166110) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 166408..167811 FT /pseudo FT /transl_table=11 FT /gene="argA" FT /locus_tag="BB3404" FT /product="putative amino-acid acetyltransferase" FT /EC_number="2.3.1.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP2335" FT /db_xref="PSEUDO:CAE33896.1" FT misc_feature 166570..167289 FT /note="HMMPfam hit to PF00696, DE Amino acid kinase family, FT score 2.7e-10" FT misc_feature 167494..167724 FT /note="HMMPfam hit to PF00583, DE Acetyltransferase (GNAT) FT family, score 4e-11" FT CDS 167885..168157 FT /transl_table=11 FT /locus_tag="BB3405" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2336" FT /db_xref="GOA:Q7WH06" FT /db_xref="InterPro:IPR007457" FT /db_xref="UniProtKB/Swiss-Prot:Q7WH06" FT /protein_id="CAE33897.1" FT /translation="MSRIVNCVKLKREAEGLDFPPYPGELGTRIWQQISKEAWEEWKQI FT QTRLVNENRLNLADARARKYLQQQMERFLFEDGTVEAQGYVPPSA" FT CDS 168211..170094 FT /transl_table=11 FT /locus_tag="BB3406" FT /product="putative phospholipase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2337" FT /db_xref="GOA:Q7WH05" FT /db_xref="InterPro:IPR008475" FT /db_xref="UniProtKB/TrEMBL:Q7WH05" FT /protein_id="CAE33898.1" FT /translation="MPAATDPDIAALVARAAAVAPERRSGTLRDLDHIVILMQENRGFD FT HYYGALPGARGRADPHRAPTPDGDVFVQAHAGQRLAPYPLAPALPPGQPLGHLTPHTWD FT DAQRAWNDGRMDQWLAAKGRLGMGYYRPEELPLQTALARAFTLCEAYHCSMHAGTNPNR FT LFLWTGTNDPHGQAGGPALVNTHDRPGPAHEGYAWTTYPERLQAAGVDWAIYQDMADNY FT HDNPLAGFRQYRAELAGGAARAPLRERALSTRTLAALAEDAANGRLPQVAWIIAPAADS FT EHPEVSSPAQGAAFSARVLDILTRDPALWRRCALLLTYDENDCFFDHMPPPAPPGAAGG FT GSTADTAGEYHQARGGPSAGTPDDPRALHGRAYGLGPRVPMLVVSPFSRGGWLDARVYD FT HTSVIRLLESRFGVAEPNISPWRRAVCGDLSHAFDFTGAQDQAGAPGPRSRPSPYACHV FT EAWAADGRQRVRMANPGHATLVLHVYDCLRLAQGPRRYTIEPGRQWEDSWPDAGADLAC FT DLWILGPDGFHRHIRRHGAAAPLAAAWRDQPPALLLENRGAQALQARIESAYGEAPALL FT RLAPGEQAAWPYEPSASRGWYDLTASAAGQSLRLAGRMRAAGPGRPDPRLG" FT CDS complement(170108..170887) FT /transl_table=11 FT /locus_tag="BB3407" FT /product="putative transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2338" FT /db_xref="InterPro:IPR008170" FT /db_xref="UniProtKB/TrEMBL:Q7WH04" FT /protein_id="CAE33899.1" FT /translation="MTEHTNKQFDADLQHVRSQFLQMGGIVEAMIHEAVEAIPAGDMSM FT VEKVREREKEVNRHEVEIDERISLILARHQPTAIDLRTLLAVSKMLTDMERSGDEAEKI FT ATAVRRMYENDQRHIPLIELRHMAVNVGNMLRQALDAFARLDPILAAQVVRSDKEVDKE FT WKAALRNLITYMMEDPRTISRAIDMIFIARALERIGDHAKNMAERVIYMVKGADVRHTG FT VKNTERLARGEEAIEKADKAEKAGNAETPASTPEVPQ" FT misc_feature complement(170261..170518) FT /note="HMMPfam hit to PF01895, DE PhoU family, score FT 2.5e-25" FT misc_feature complement(170564..170830) FT /note="HMMPfam hit to PF01895, DE PhoU family, score FT 6.9e-20" FT CDS complement(171042..171722) FT /transl_table=11 FT /gene="rpiA" FT /locus_tag="BB3408" FT /product="ribose 5-phosphate isomerase a" FT /EC_number="5.3.1.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP2339" FT /db_xref="GOA:Q7WH03" FT /db_xref="InterPro:IPR004788" FT /db_xref="UniProtKB/Swiss-Prot:Q7WH03" FT /protein_id="CAE33900.1" FT /translation="MLTQQELKQQAAEAALELVEQVAGPDVIIGVGTGSTADLFIDGLA FT RFKGRLRGTVASSERSAARLAGHGLAVLDLNDVQSMPIYVDGADEIDPNLHMIKGGGGA FT LTREKIVASVARRYICIADESKLVERLGRFPLPVEVIPMARNAVARGLSRLGGQPALRE FT GFVTDNGNIILDVAGLSIADAPGLEKTINDIPGVVTCGLFALAGADVALLATQDGIRRL FT ERRG" FT CDS complement(171776..173434) FT /transl_table=11 FT /locus_tag="BB3409" FT /product="putative acyl-CoA dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2340" FT /db_xref="GOA:Q7WH02" FT /db_xref="InterPro:IPR006091" FT /db_xref="UniProtKB/TrEMBL:Q7WH02" FT /protein_id="CAE33901.1" FT /translation="MQPFLTHLVTNQVAPLEDYSLYETDPVLQQAVRREGAAAFESELR FT EHGAWLGRAQTLEAAAEANRNSPRLLAYDPTGHRQDKVAFHPAWNALMTGIVARGLHSR FT AWAQPVPGAHVARAAAYLMQGQVEAGTLCPTTMTHAAVPLLAREPAGVIDYGRDWLDVL FT YSREFDASDAPIGRKRGALIGMGLTEKQGGSDLRSVATRAEPVGAPGRGQAYLLTGHKW FT FLSVPHADAHLVLARTDEGLGCFFVPRWVPDGPRNAVRLRRLKDKLGNRSNASAEVEFE FT QAWGAMLGEPGRGTAVLLEMAATTRLDCVLGSAALLRQAVAQALHHAAQRQAFGTALLA FT QPLMRVLLADLALESEAATVLALRLARAVDERADPVARALVRVGTPAAKLWVCKRAIAA FT LGECMEVLGGNGYVEEAPLARLYREAPVNSIWEGSGNVMALDVLRGLAREAEALPGLRD FT ELDRARGVVPAYDQALDDWLALVAQPDSVPQALARRVAAGLATLWQAALLIRHAPAPVG FT AAFAATRLHAPAGIVGAAPIDDPAPILARAWPGIC" FT misc_feature complement(172094..172561) FT /note="HMMPfam hit to PF00441, DE Acyl-CoA dehydrogenase, FT C-terminal domain, score 7e-41" FT misc_feature complement(172163..172222) FT /note="PS00073 Acyl-CoA dehydrogenases signature 2." FT misc_feature complement(172571..172879) FT /note="HMMPfam hit to PF02770, DE Acyl-CoA dehydrogenase, FT middle domain, score 4.2e-27" FT misc_feature complement(172841..172879) FT /note="PS00072 Acyl-CoA dehydrogenases signature 1." FT CDS complement(173514..174929) FT /transl_table=11 FT /locus_tag="BB3410" FT /product="conserved hypothetical lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2341" FT /db_xref="InterPro:IPR003798" FT /db_xref="UniProtKB/TrEMBL:Q7WH01" FT /protein_id="CAE33902.1" FT /translation="MLKQCPGVSRPLFLQSWFVEIGLESYLPWITVAAAVFALLACLLA FT LRGRGGDARLQALLDGLERVDRGLRADLAESQRGLRAELAESMRALRAEMAQSQEELRA FT TLGRDARAARAEHGESLARFASQFGERLQGLVELNDRRMQDVRQVVDQRLQALQADNGA FT RLEEMRRTVDEKLHATLEQRLGESFRMVSDRLEAVHKGLGEMQTLAAGVGDLKRVLTNV FT KSRGTWGEVQLARLMEDAMTPEQYARNVKPVPGSDAVVEFAIRLPGKDEGGGPVWLPID FT AKFPKEEYERLMDAQDAAEQEAARAAGAALAKAVETQARLIASKYVAPPHTTDFAIMFL FT PTEGLYAEVLRRPGLLDKLHGLRVNVAGPANLAALLNSLQMGFRTLAIERRSSEVWQVL FT RAVKTEFAKFGESLATVKKTLDTASNRIGQTEVRTRAMLRNLRTVEALPEAEAARLLGD FT EPDTLGADQGSPS" FT misc_feature complement(174786..174854) FT /note="1 probable transmembrane helix predicted for BB3410 FT by TMHMM2.0 at aa 26-48" FT misc_feature complement(174804..174836) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 175007..175714 FT /transl_table=11 FT /locus_tag="BB3411" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2342" FT /db_xref="InterPro:IPR019647" FT /db_xref="UniProtKB/TrEMBL:Q7WH00" FT /protein_id="CAE33903.1" FT /translation="MPWPDNTADHNTHHAPLPGSGYAAMFGPLDLSQARLLAQGGDRYV FT FQHPHEPALLVKVMDMEARAVYLEARPFKRWYKQFQRESAYRVYLNEITEYVTTSTSAS FT GVWQVPLARIVGLAQTSLGLGLLAEKITDAAGNMAPTVSDLVKRGEFDTALAQRLDRFF FT EDLADAHIVIHDISASNIACGRNAEGREGLYLIDGFGVLPLIPTYAWSRRLNRKRIMRK FT YAELRARMPAPAP" FT CDS complement(175722..176438) FT /transl_table=11 FT /locus_tag="BB3412" FT /product="putative methypurine-DNA glycosylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2343" FT /db_xref="GOA:Q7WGZ9" FT /db_xref="HSSP:1F6O" FT /db_xref="InterPro:IPR003180" FT /db_xref="UniProtKB/TrEMBL:Q7WGZ9" FT /protein_id="CAE33904.1" FT /translation="MPAPARTARPQPGPALPAAFFNRDAQQLARDLLGKVVRHRVDGLW FT LSARIIETEAYYLAEKGSHASLGYTHKRRALFMDGGVVYMYYARGGDSLNFSAAGPGNA FT VLIKSGHPWVDEVSGPRALACMQRLNPDAQGQPRPPARLCAGQTLLCRALGLKVPQWDA FT KAFDPRRFFVEDVGVRLDRLVRTTRLGIPAGRDEHLPYRYVDPAYAAFCTRNPLRRGQQ FT AGRDFDWVDPDGALYV" FT misc_feature complement(175815..176390) FT /note="HMMPfam hit to PF02245, DE Methylpurine-DNA FT glycosylase (MPG), score 9.3e-13" FT CDS complement(176443..176799) FT /transl_table=11 FT /locus_tag="BB3413" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2344" FT /db_xref="InterPro:IPR012335" FT /db_xref="UniProtKB/TrEMBL:Q7WGZ8" FT /protein_id="CAE33905.1" FT /translation="MKQVTLYGLNKCSTCVKARDWLAARGVAHDFVDYRDHPVPAATLK FT QWAGKVGGWEKLVNRTSMTWRALSDERKAARSDAEWTALIAEYPALVRRPVTVTPDGEV FT TVGFSEKRYGERFA" FT misc_feature complement(176458..176745) FT /note="HMMPfam hit to PF03960, DE ArsC family, score FT 1.2e-24" FT CDS complement(176796..177605) FT /transl_table=11 FT /locus_tag="BB3414" FT /product="putative inner membrane permease polyamine FT transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2345" FT /db_xref="GOA:Q7WGZ7" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7WGZ7" FT /protein_id="CAE33906.1" FT /translation="MKGPNKSLRMLVLGLGYFFLYVPIISLMVFSFNDSPVVTSWTGFS FT LRWYGSLLEDSALLRAAWLSFKIAVLTATAATIIGTWAGYVLGRMGRFRGFTLYVGMLS FT APLVIPEVVLGISLLLMFVEMRGHLGWPEQNGVFTIWVGHVTLCMAFVAVVVQSRIRDM FT DRSLEEAALDLGATPIKVFFAITLPLIAPALVSAWLLAFTLSLDDVVIASFLSGPGSST FT LPMEVFSRVRLGLKPEINALATLFILAVGTCVIIANRLQWRKEADNR" FT misc_feature complement(join(176832..176891,176997..177065, FT 177138..177197,177240..177308,177345..177404, FT 177519..177587)) FT /note="6 probable transmembrane helices predicted for FT BB3414 by TMHMM2.0 at aa 7-29, 68-87, 100-122, 137-156, FT 181-203 and 239-258" FT misc_feature complement(176910..177131) FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 8.5e-10" FT misc_feature complement(177042..177128) FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT misc_feature complement(177336..177428) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(177513..177605) FT /note="Signal peptide predicted for BB3414 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.678) with cleavage site FT probability 0.285 between residues 31 and 32" FT CDS complement(177602..178516) FT /transl_table=11 FT /locus_tag="BB3415" FT /product="putative inner membrane permease polyamine FT transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2346" FT /db_xref="GOA:Q7WGZ6" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7WGZ6" FT /protein_id="CAE33907.1" FT /translation="MRRFALPRPSRRTVAIVPPFAWLVLFLLVPFLLVFKISFAELQFG FT IPPYTPLAEFKDEAVQLSLHLRGYVLLFTDSLYVATYLNSVKMAAITTLCCILIGYPIA FT YYIARSAPALRNLLLLAVILPFWTSLLLRVYAWVGILRNDGLLNKLLMSLGLISSPLEI FT YRTDLAVYIGLVYAYLPFFILPLYANLVKMDLRLLEAAYDLGARPWQAFWRITVPLSRP FT GVIAGAMLVFIPSVGEYVIPEMLGGADTLMMGRVMWNEFFNNTDWPMASAVTCVMVLLL FT LVPLALFQYNQIKQQDFAGGGRR" FT misc_feature complement(join(177653..177721,177779..177847, FT 177944..178012,178100..178168,178187..178255, FT 178412..178480)) FT /note="6 probable transmembrane helices predicted for FT BB3415 by TMHMM2.0 at aa 13-35, 88-110, 117-139, 169-191, FT 224-246 and 266-288" FT misc_feature complement(177731..177952) FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 2e-18" FT misc_feature complement(177863..177949) FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT misc_feature complement(178397..178516) FT /note="Signal peptide predicted for BB3415 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.639) with cleavage site FT probability 0.499 between residues 40 and 41" FT CDS complement(178513..179640) FT /transl_table=11 FT /locus_tag="BB3416" FT /product="putative polyamine transport ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2347" FT /db_xref="GOA:Q7WGZ5" FT /db_xref="HSSP:1G29" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WGZ5" FT /protein_id="CAE33908.1" FT /translation="MSDIRYSAQHSADPDEFVKVSDVVKIFGDVVAVQSVNLSVRRNEI FT FALLGSSGSGKSTLLRMLAGFEDATSGQILLDGEDITNVPPYRRPVNMMFQSYALFPHM FT TVEANVAFGLKQEGVDRAEIHDRVFEALDLVQMAGYARRKPHQLSGGQQQRVALARSLV FT KRPKLLLLDEPMSALDKQIRQKTQIELVKILQQVGVTCIMVTHDQEEAMTMAHRLAVMT FT EGQIVQCGTPQDVYEFPNSRFVAGFIGSTNLFSGTIVVDEPDHVAIESGELTRPLYVSH FT GVSEPLGMEVHVSIRPERLVVLREQPEAEHNWAHGMVTHMAWMGSYGLYQIRLDSGKIV FT EASVPSLQLARQDAPGIDEEVFVSWDADSATVFSS" FT misc_feature complement(178969..179514) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 4.1e-64" FT misc_feature complement(179155..179199) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(179470..179493) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(179647..180750) FT /transl_table=11 FT /locus_tag="BB3417" FT /product="putative polyamine transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2348" FT /db_xref="GOA:Q7WGZ4" FT /db_xref="HSSP:1A99" FT /db_xref="InterPro:IPR001188" FT /db_xref="UniProtKB/TrEMBL:Q7WGZ4" FT /protein_id="CAE33909.1" FT /translation="MKFSARLRCVLGGAVLAAAMSPAAAQDKVVNVYNWAEYTAPDTIP FT GFEKETGIKVRYDVYDNNDTLQAKLLTGKSGYDVVVPSTHYASRQIEGGLYQKLDKSKI FT PNWKNLDPDVMALVATIDPGNQYVIPWGYGTNGLGYNVTKVRQIMGEGVDLANWDMLFK FT PENAAKLKECGISMLDEAAQVFPAVLKYLGKDPNSANTDDYKEALALLKQIRPYIRQFS FT SSGYIDELAVGDLCMVYGFSGDVMIARRRAQEARKPYEINYFIPKGGAPAWFDVMAIPK FT DAPHPEEAHAFINYIETPQVHAAITNTMFYPNANKAAREFVVKDVADNPMIYPPADVSK FT TLYVIKAQPLNVQRLQTRMWAELKSGR" FT misc_feature complement(179656..180657) FT /note="HMMPfam hit to PF01547, DE Bacterial extracellular FT solute-binding protein, score 6e-12" FT misc_feature complement(180526..180549) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(180676..180750) FT /note="Signal peptide predicted for BB3417 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.990 between residues 25 and 26" FT CDS complement(180882..181616) FT /transl_table=11 FT /locus_tag="BB3418" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2349" FT /db_xref="GOA:Q7WGZ3" FT /db_xref="InterPro:IPR010440" FT /db_xref="UniProtKB/TrEMBL:Q7WGZ3" FT /protein_id="CAE33910.1" FT /translation="MPADTRARTERLAWREAPAGAMLYDAARIEAPGPALFDPSSYGAA FT AQPVAAGGRQAAWFVATPGWQGVLRGYRRGGLAARVSRDAYVWQGEARTRGLREYRLLA FT HMREQGLAVPAPLAAGYWRHGLTYRAAILVERIPAARPLASLLDEPAWEAVARAIAAMH FT RAGVWHADLNAFNILLDPGGLAWLIDFDRGTAGGVSERGRQGNLARLRRSLVKVGGERG FT QDFWQRLEPAYRAAWARGTARA" FT CDS complement(181606..182031) FT /transl_table=11 FT /locus_tag="BB3419" FT /product="globin-like protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2350" FT /db_xref="GOA:Q7WGZ2" FT /db_xref="InterPro:IPR019795" FT /db_xref="UniProtKB/TrEMBL:Q7WGZ2" FT /protein_id="CAE33911.1" FT /translation="MTTTRVQPISEPLDTSKTVFDMLGGEPGVRELVDRFYDLMDMESD FT FKALRDAHGPSLEQARDKLFWFLCGYFGGPDHYIERFGHPRLRARHLPFSIGEIERDQW FT VACMGRAMQDQQLPAALVDRLLQAFYGTADWMRNRAG" FT CDS complement(182031..184562) FT /transl_table=11 FT /locus_tag="BB3420" FT /product="putative inner membrane transport permease" FT /note="ortholog of Bordetella pertussis (BX470248) BP2351" FT /db_xref="GOA:Q7WGZ1" FT /db_xref="InterPro:IPR003838" FT /db_xref="UniProtKB/TrEMBL:Q7WGZ1" FT /protein_id="CAE33912.1" FT /translation="MMDFPDARSPARQGWLPTLRLGLRMMMRDARAGELRLLVLALVVA FT VAAVTSVGFLADRVGRALERDAGQMLGADLVLEADEPVPAEFAQRARQAGLSVSSTLQF FT PSMASANGNAQLASLKAVEPGYPLRGSLRVAEAPFAQDAPTRDVPALGAVWVDAQLLTL FT LGVQVGDTLGLGDARLRIERVITYEPDRGMQFVNVAPRVMLRTADLPATGLVAPGSRIG FT YALLAAGQPDAVAAYGQWLGQHLQRGQKLATLESGRPEVRRTLDRAQRFLALVALLAVL FT ISAVAVALAAGRFMQRHRDGIAVMRCLGAVQAQVTRMLVLEFALVGLAASAVGCLLGYA FT VHQGLVLALGQLIDTSLPAPSAIPAAQGVLTGLLMLLGFALPSLAQLRHVPPARVLRRD FT ADRLRARGAGGYALGAVGLGLLIWWFAGDARLGAVVAGGFLGAFAVFALVAWLAVQALA FT RLRRAAAGLPALRFALAGVVRRRAATITQVCALAIGLMALLLLTMTRTDLIAGWQRTLP FT PDAPNRFLINVQPDQRDAVMQRLADAGLGQVHLWPMVRGRLVSVNGRPVGPDDFDEPRA FT KRLVDREFNLSYGDTLPESNRVEQGRWLRPDAAEVSLESGLARSLKLAVGDKLGFDIAG FT QQVEVVVSGTRRVDWDSMRVNFFAILSPQALADAPQSWITSFHLPPAKAAVLRDLVQAF FT PNLTVFDVGAILGQLQTVLDEVVKAVQLLFLFTLAAGVLVLAAALTATRDERVREAAVL FT RALGATRRQLARAQRLELLAVGGLAGLLAAGGATAVAWVLSTQVFDFAISLQWWPWLAG FT ALAGMLGAWAGGALALRGVLRTPPLVTLREA" FT misc_feature complement(182055..182429) FT /note="HMMPfam hit to PF02687, DE Predicted permease, score FT 2e-14" FT misc_feature complement(join(182079..182147,182190..182258, FT 182340..182408,183051..183119,183201..183269, FT 183282..183350,183408..183476,183540..183608, FT 183681..183749,184395..184463)) FT /note="10 probable transmembrane helices predicted for FT BB3420 by TMHMM2.0 at aa 34-56, 272-294, 319-341, 363-385, FT 405-427, 432-454, 482-504, 719-741, 769-791 and 806-828" FT misc_feature complement(183387..183773) FT /note="HMMPfam hit to PF02687, DE Predicted permease, score FT 2.7e-12" FT CDS 184677..185651 FT /transl_table=11 FT /locus_tag="BB3421" FT /product="putative periplasmic substrate-binding transport FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2352" FT /db_xref="GOA:Q7WGZ0" FT /db_xref="InterPro:IPR018389" FT /db_xref="UniProtKB/TrEMBL:Q7WGZ0" FT /protein_id="CAE33913.1" FT /translation="MRKSWLAAATLAACTVAASLPAAAQTTLKMAYALSTSSHYGAGAE FT AFAKSIEGASGGKYKVQQFANSALGGEREVIEGLQIGTIDLAIVSTGATLNFVPETGVF FT DIPFLLRDLPHARAVLDSKIGQDMLAKFPDRGIIALAWGEQGFRHLTNNVRPVKTPADA FT KGLKIRTTENPIHITAFRQIGILPTPMAWPEVATALQQGTIDGQENPLSVITSAKLSQL FT QKYLSLTGHVYGPALVLMSANVYNGLSDAEKASFKAAGKDSAQAMRAYVDNIEQTGVEQ FT LKKEGMEVSEVDRAAFAAAVEPAYAEYYKKFDKQLIQSIRDTK" FT misc_feature 184677..184748 FT /note="Signal peptide predicted for BB3421 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.994 between residues 24 and 25" FT misc_feature 184686..184718 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 184689..184757 FT /note="1 probable transmembrane helix predicted for BB3421 FT by TMHMM2.0 at aa 5-27" FT misc_feature 184764..185612 FT /note="HMMPfam hit to PF03480, DE Bacterial extracellular FT solute-binding protein, family 7, score 6.1e-99" FT CDS 185737..186237 FT /transl_table=11 FT /locus_tag="BB3422" FT /product="putative inner membrane transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2353" FT /db_xref="InterPro:IPR007387" FT /db_xref="UniProtKB/TrEMBL:Q7WGY9" FT /protein_id="CAE33914.1" FT /translation="MRLLCTAERALFRLVSAIAQILLIAAACAAFYQVIARFILHSPAD FT WSEVATRALLIWTVLLGVALAFRHGAMISVELLRNTLQGAARRLLEHAIALTCIAFLAF FT IAWIGGQMTWRVRFQNVPSLDISISWIYLAIPVGATLAVIAVLARWLAGEQDDVPVRND FT AQG" FT misc_feature join(185770..185838,185881..185940,186001..186069, FT 186112..186180) FT /note="4 probable transmembrane helices predicted for FT BB3422 by TMHMM2.0 at aa 12-34, 49-68, 89-111 and 126-148" FT misc_feature 185788..185820 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 186278..187555 FT /transl_table=11 FT /locus_tag="BB3423" FT /product="putative inner membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2354" FT /db_xref="GOA:Q7WGY8" FT /db_xref="InterPro:IPR004681" FT /db_xref="UniProtKB/TrEMBL:Q7WGY8" FT /protein_id="CAE33915.1" FT /translation="MSQLMILSMLIFFGLSVPVAVAIGIAALTGVSVGGLPWLVVAQQI FT YAALDKYPLVAIPFFILAGNLMEAGGISERMVEFAKSLVGGIQGGLACTCVLTCMIFAA FT VAGSSVATTFAVGAILIPAMVRHGYPAPFAASLQASAAELGVIIPPSIPMILFAVSTDT FT STGELFIAGVMPGVLIGLALMLYVWLYARRNGLGKQDGAGRLPVWQAFKRAWLALLMPV FT IILGGIYGGVFTPTEASVVAVMYAVLIGWLVYRRLSFGLISTTLHRSVISTAVIMFVIA FT NAGVFSFLLNRAGIPDALGVWLSQLFDNHFTFLMGVNAALFVIGMFIETSASVVVLAPL FT LLPVAMKFGVEPVHFGVIMVVNLALGMITPPFGVNLFAACAVAKLPLERLVRPLVPFVG FT VVVACLLVITYWPGLSLGLRDLVYGR" FT misc_feature 186278..186343 FT /note="Signal peptide predicted for BB3423 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.995) with cleavage site FT probability 0.642 between residues 22 and 23" FT misc_feature join(186296..186364,186407..186475,186581..186649, FT 186692..186760,186779..186847,186917..186976, FT 186989..187042,187085..187153,187214..187282, FT 187340..187408,187445..187513) FT /note="11 probable transmembrane helices predicted for FT BB3423 by TMHMM2.0 at aa 7-29, 44-66, 102-124, 139-161, FT 168-190, 214-233, 238-255, 270-292, 313-335, 355-377 and FT 390-412" FT misc_feature 186665..187138 FT /note="HMMPfam hit to PF00597, DE DedA family, score FT 3.7e-13" FT CDS 187695..188327 FT /transl_table=11 FT /locus_tag="BB3424" FT /product="fimbrial protein" FT /db_xref="GOA:Q7WGY7" FT /db_xref="InterPro:IPR014779" FT /db_xref="UniProtKB/TrEMBL:Q7WGY7" FT /protein_id="CAE33916.1" FT /translation="MKQEFSSIQFKAALLAAGLVLQVPAHANDGTIVITGAITDTTCII FT EDPSGPNHTKVVQLPKISKSALKVKGDQAGRTPFTISLKDCPADLGNGVKVYFEPGPTT FT NYATGDLKAYKLAYATNPNATPLNSIVAATPATGVEIRISNLDDSKIPMGVDVTNQRAQ FT GFNPVEQTGDTNKRTVTMRYLASYVKADGDIQASAITTYVGFSVVYP" FT misc_feature 187695..187775 FT /note="Signal peptide predicted for BB3424 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 27 and 28" FT misc_feature 187782..188321 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00419, DE Fimbrial protein, score FT 7.3e-09" FT variation 188371..188385 FT /note="phase variable poly C" FT CDS 188443..189069 FT /transl_table=11 FT /gene="fimN" FT /locus_tag="BB3425" FT /product="fimbrial subunit protein" FT /db_xref="GOA:Q7WGY6" FT /db_xref="InterPro:IPR014779" FT /db_xref="UniProtKB/TrEMBL:Q7WGY6" FT /protein_id="CAE33917.1" FT /translation="MKQVPPHFLLAPAVLAGVLAWHIPARANDGTIVITGNIVDNTCEV FT VDPPQPNHIKVVHLPKISTSALKKTGDTAGATPFSIKLQNCPESLGNGVKLYFEPGPTT FT DYSTRDLTAYKLAYTANSTTNSNIVAGQVAEGVQIRIANLDGTQIPMGENAAGQNARGF FT DPVAQASGGKKSVTLSYLASYVRKSSGDVDSGSITTYVGFSVVYP" FT misc_feature 188443..188523 FT /note="Signal peptide predicted for BB3425 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.953) with cleavage site FT probability 0.941 between residues 27 and 28" FT misc_feature 188530..189063 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00419, DE Fimbrial protein, score FT 2.5e-16" FT CDS 189302..189907 FT /transl_table=11 FT /gene="fimX" FT /locus_tag="BB3426" FT /product="fimbrial protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2674" FT /db_xref="GOA:Q7WGY5" FT /db_xref="InterPro:IPR014779" FT /db_xref="UniProtKB/TrEMBL:Q7WGY5" FT /protein_id="CAE33918.1" FT /translation="MQAKTFLLGAALAGVALAAHAEDGTIVITGTITDQTCTIEDPSPG FT YIKVVHLPTISKSALKNAGDVAGRTRFDIKLKDCPTTVNTLKLYFEPGPTTDYGTKDLK FT AYKQAWYVDAATLLKSPPSVTEAKGVQIRLMNLNGKQIPMGETEPNQHAAAFSGTMQAD FT QAKKSFTLQYLAGYVKKASGEVEATMLTTYVGFSVVYP" FT misc_feature 189302..189364 FT /note="Signal peptide predicted for BB3426 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 21 and 22" FT misc_feature 189371..189901 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00419, DE Fimbrial protein, score FT 8.2e-18" FT CDS complement(189961..191274) FT /transl_table=11 FT /gene="paaK" FT /locus_tag="BB3427" FT /product="phenylacetate-coenzyme A ligase" FT /EC_number="6.2.1.30" FT /note="ortholog of Bordetella pertussis (BX470248) BP2675" FT /db_xref="GOA:Q7WGY4" FT /db_xref="InterPro:IPR011880" FT /db_xref="UniProtKB/TrEMBL:Q7WGY4" FT /protein_id="CAE33919.1" FT /translation="MSTTMSKPGLDPIEHASRDEIAALQLERLKWTLSHAYQNVPHYKK FT AFDAAGVHPEDLQQLSDIARFPFTTKQDLRDNYPFGMFAVPRERVSRVHASSGTTGKPT FT VVGYTARDLDNWANLVARSIRAAGGKPGDIVHVAYGYGLFTGGLGAHYGAERLGCTVVP FT MSGGQTEKQVQLINDFRPDIIMVTPSYYCNILEEQRRQGMDPRQSSLRIGIFGAEPWTG FT QMRADIEAEGGIDAVDIYGLSEVMGPGVASECVETKDGPVVWEDHFYAEIVNPDTGEPV FT ADGEPGELVFTSLTKEAMPIIRYRTRDLTRLLPPTSRSMRRIGKITGRSDDMLIVRGVN FT LFPTQVEELVLKIAQLAPHYQLVLSRSGNLDELEILTEVRAEFSTLTEAERAGLGKQLQ FT HAVKSYIGVSARVQVADTGFVERTLTGKARRVIDKRPR" FT misc_feature complement(190192..191181) FT /note="HMMPfam hit to PF00501, DE AMP-binding enzyme, score FT 4.9e-05" FT CDS complement(191349..191819) FT /transl_table=11 FT /gene="paaI" FT /locus_tag="BB3428" FT /product="phenylacetic acid degradation protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2676" FT /db_xref="InterPro:IPR006683" FT /db_xref="UniProtKB/TrEMBL:Q7WGY3" FT /protein_id="CAE33920.1" FT /translation="MNAHVPAVDVPSDPHELARAVGATMYAGDAASQGLGMTVVEIAPG FT YAKLSMPVRADMLNGHKTCHGGFIFALADSAFAFSCNSRNVSTVASGCTIDYLAPGLEG FT DVLTAVAQERSLAGRTGIYDVTVTNQQGRSVAVFRGRSYRIRGQVVGEPPQD" FT misc_feature complement(191385..191747) FT /note="HMMPfam hit to PF02584, DE Uncharacterized protein FT PaaI, COG2050, score 3.1e-34" FT CDS complement(191819..192607) FT /transl_table=11 FT /gene="paaG" FT /locus_tag="BB3429" FT /product="probable enoyl-CoA hydratase" FT /EC_number="4.2.1.17" FT /note="ortholog of Bordetella pertussis (BX470248) BP2677" FT /db_xref="GOA:Q7WGY2" FT /db_xref="HSSP:1EY3" FT /db_xref="InterPro:IPR011968" FT /db_xref="UniProtKB/TrEMBL:Q7WGY2" FT /protein_id="CAE33921.1" FT /translation="MTYQDILFELAGGVARLTLNRPDKLNSFTARMHGEVADALGRIER FT EGARVLVLTGAGRGFCAGQDLSERRPTADGAPPDLGETVEKFYGPLVRGLAALPLPVVV FT GVNGVAAGAGANLALAGDIVIARESASFIQSFCRLGLIPDTGGTFALPRLVGRARAAGL FT ALLGNKLSARQAQDWGLIWQCVADDEFDSALDGLAAHFAQAPTKGLAFTKRALQASLGN FT DLSTQLDLERDMMRELGRSADYAEGVAAFLDKREPQFKGK" FT misc_feature complement(192050..192565) FT /note="HMMPfam hit to PF00378, DE Enoyl-CoA FT hydratase/isomerase family, score 1.4e-44" FT CDS complement(192618..194282) FT /transl_table=11 FT /locus_tag="BB3430" FT /product="putative oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2678" FT /db_xref="GOA:Q7WGY1" FT /db_xref="InterPro:IPR016162" FT /db_xref="UniProtKB/TrEMBL:Q7WGY1" FT /protein_id="CAE33922.1" FT /translation="MSQDFFERHQPMLQKALEAAAQRGYWSPFPESPSPRNYGETAAQD FT GQAAFEALRGKPFALDLPQASGAVGGEVSPFGFELGITYPQVAPEALVAASSKALEQWR FT RAGPRAWVGVSLEILQRLNRRSFEMAHAVQHTTGQAFMMAFQAGGPHAQDRGVEAVTYA FT WQEMSRIPGVALWEKPQGKHDPIKMEKRFTVVPRGIALVIGCSTFPTWNGYPGLFASLA FT TGNTVIVKPHPGAILPLALTVQVAREVLGEAGFDPDVVLLAAHPAGDDTAQRLALDPAV FT RIVDFTGSSANGNWLEQNARQALVYTEKAGVNQVLIDSTDDLKGVARNLAFSLALYSGQ FT MCTAPQNIYVPRDGIQTAEGRVGFDEVAAALGAALDKLAGDPAKAVELTGAVQNDATVA FT RIGKARQLGLPVLADSKALAHPQFEQARVHTPLLLRADAGNDALGQEWFGPIAFVVATD FT STAHSIELAGASVRQHGALSLSAYTTDEAVASRVQDMAEHSGVSLSLNLTGGVFVNQTA FT AFSDFHGTGANPAANAALSDSAFVANRFRVVQTRRHV" FT misc_feature complement(192633..194048) FT /note="HMMPfam hit to PF00171, DE Aldehyde dehydrogenase FT family, score 2.8e-08" FT misc_feature complement(192873..192905) FT /note="PS00639 Eukaryotic thiol (cysteine) proteases FT histidine active site." FT CDS complement(194333..195421) FT /transl_table=11 FT /gene="paaE" FT /locus_tag="BB3431" FT /product="probable phenylacetic acid degradation NADH FT oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2680" FT /db_xref="GOA:Q7WGY0" FT /db_xref="HSSP:1AWD" FT /db_xref="InterPro:IPR011884" FT /db_xref="UniProtKB/TrEMBL:Q7WGY0" FT /protein_id="CAE33923.1" FT /translation="MSHNPFHMLKVASVARNTRDAVVVTFDLPPELAGDFRFRPGQYLT FT LRTRLDGEEVRRSYSICSAPGDGVLRVAIKKVDEGVFSNWANHELQPGQSLEVMPPAGN FT FTVDFDPDNARHYVAFAVGSGITPVFSLVKSALSAEPRSRFTLFFGNRASSSVLFREEI FT EDLKNLYMERFSLVYIMSRESQDIELFNGRLDGDKVDQLLTAWMRPGDIDYAFVCGPQT FT MIESVVEHLQARGMPKSHIKFELFGAPKGPRALRTGRDAPAAPGKGQCEVTVVQDGHSR FT TFFIDKNKDSVLDSALAQGVELPYSCKGGVCSTCRCKVVEGEVDMDANFALEDYEVARG FT FVLSCQSYPVSDRLVIDFDQET" FT misc_feature complement(194369..194602) FT /note="HMMPfam hit to PF00111, DE 2Fe-2S iron-sulfur FT cluster binding domain, score 1.8e-12" FT misc_feature complement(194477..194503) FT /note="PS00197 2Fe-2S ferredoxins, iron-sulfur binding FT region signature." FT misc_feature complement(194732..195082) FT /note="HMMPfam hit to PF00175, DE Oxidoreductase FT NAD-binding domain, score 2.9e-13" FT misc_feature complement(195101..195400) FT /note="HMMPfam hit to PF00970, DE Oxidoreductase FT FAD-binding domain, score 6.2e-17" FT CDS complement(195433..195939) FT /transl_table=11 FT /gene="paaD" FT /locus_tag="BB3432" FT /product="phenylacetic acid degradation protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2681" FT /db_xref="InterPro:IPR011883" FT /db_xref="UniProtKB/TrEMBL:Q7WGX9" FT /protein_id="CAE33924.1" FT /translation="MNALPRVPAGQVLAWLESVPDPEIPVLSVVDLGVVRDIGWDGDTC FT VVTITPTYSGCPAMREITHDIETTLAGHGLASVRVETRLAPAWTTDWMTARGRAALRQY FT GIAAPVERAVDISGISRRRAAPAIECPHCGSLDTRLISHFGSTSCKALYRCVACREPFD FT YFKPH" FT misc_feature complement(195694..195909) FT /note="HMMPfam hit to PF01883, DE Domain of unknown FT function DUF59, score 1.2e-17" FT CDS complement(195936..196700) FT /transl_table=11 FT /gene="paaC" FT /locus_tag="BB3433" FT /product="phenylacetic acid degradation protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2682" FT /db_xref="GOA:Q7WGX8" FT /db_xref="HSSP:1OTK" FT /db_xref="InterPro:IPR011882" FT /db_xref="UniProtKB/TrEMBL:Q7WGX8" FT /protein_id="CAE33925.1" FT /translation="MDKSLFEYLLRLGDTTLVLSQRLGQWCGHGPVLEEDLALTNTALD FT LLGQARMWLTLAGEVEGAGRDEDRLAYLRDAPQFRNLLLVERPNGHYGDTMARQFLFDT FT WHYFLLIRLARSADERVAAIAAKALKEVTYHARRSADLVVRLGDGTALSHARMQAAIDA FT AWPYVGEMFVDDAIDQDLAARGIACELSSLRDEWLAQVREVLDEATLAMPQEDEAFHPA FT HRGGRQGRHTEHLGYILAEMQHLQRAYPGASW" FT CDS complement(196716..197000) FT /transl_table=11 FT /gene="paaB" FT /locus_tag="BB3434" FT /product="phenylacetic acid degradation protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2683" FT /db_xref="InterPro:IPR009359" FT /db_xref="UniProtKB/TrEMBL:Q7WGX7" FT /protein_id="CAE33926.1" FT /translation="MSKDWPLWEVFIRSQHGLAHKHVGSLHAPDAEMAINHARDVYTRR FT NEGLSIWVVRAADIVASSPGDKEPLFEPANSKVYRHPTFFPMPDEIKHM" FT CDS complement(197065..198054) FT /transl_table=11 FT /gene="paaA" FT /locus_tag="BB3435" FT /product="phenylacetic acid degradation protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2684" FT /db_xref="GOA:Q7WGX6" FT /db_xref="InterPro:IPR011881" FT /db_xref="UniProtKB/TrEMBL:Q7WGX6" FT /protein_id="CAE33927.1" FT /translation="MYAQLVETGVGKVKHVDQLEGPEQAFQRRIDDGVRIEPKDWMPEA FT YRKTLVRQISQHAHSEIVGMLPEGNWITRAPSLKRKAILLAKVQDEAGHGLYLYSAAET FT LGVSREDLIDDLHTGRAKYSSIFNYPTLTWADIGMIGWLVDGSAIINQIPLCRCSYGPY FT ARAMVRVCKEESFHQRQGYDLLIQMCLHGTPEQKAMCQEAFNRWWWPALMMFGPSDADS FT PNSAQSMQWKIKLFSNDELRQKMVDQTVPQAEYLGLTVPDPDLKWNAERGHYDFGAIDW FT DEFYAVIKGHGPCNRERLAARVKAHEDGAWVREAMAAHADKQARRKAA" FT CDS 198226..199155 FT /transl_table=11 FT /gene="paaX" FT /locus_tag="BB3436" FT /product="phenylacetic acid degradation operon negative FT regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2685" FT /db_xref="InterPro:IPR012906" FT /db_xref="UniProtKB/TrEMBL:Q7WGX5" FT /protein_id="CAE33928.1" FT /translation="MASTPSPLDRFLSRLLKNDPPRAKSLCVSLLGDALAPHGGAIWLG FT DLIELLAPIGINERLLRTSVFRLVAQGWLQSERHGRRSLYLLSEHGLRHTAHASQRIYD FT GPARAWNGEWTLVALPRAGNNGLAERGELRRELLWEGFGMVAPGLFAHPQTEARAAHDI FT LEKLGIPDKALVLSARDLAGAGGLPIASLAGQCWNLDEVADQYRLFSRNFGPVEKLLDP FT PPTPAQAFAVRVLLLHNWRRIVLHDPQLPTPMEPDGWPGNAARALCRRIYWQVFDASER FT HLDAVAGRENARYRPAQADIMGRFGGRP" FT CDS complement(199127..199813) FT /transl_table=11 FT /locus_tag="BB3437" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2686" FT /db_xref="InterPro:IPR004443" FT /db_xref="UniProtKB/TrEMBL:Q7WGX4" FT /protein_id="CAE33929.1" FT /translation="MDIERVEQVRAVERLAHRRGLALMPRAGLAAADFVAARLPAGAQV FT LALAGPGNNGGDALVAATLLQARGYRVAVVMPAGPARLPDDARRAWQDWCAAGGQASAD FT LPAHAPALVIDGLFGIGLARPLGGAWQGLIDQVNAWRVPVLALDVPSGLSAASGQPLGD FT PPGRPVRATWTLSFIGVPAALRAPGAAAWCGQQHLSLLGLTPAFLAEAVGPCGQATATA FT ARRSGP" FT misc_feature complement(199265..199759) FT /note="HMMPfam hit to PF03853, DE YjeF-related protein FT N-terminus, score 6.7e-37" FT CDS complement(199847..200392) FT /transl_table=11 FT /locus_tag="BB3438" FT /product="oligoribonuclease" FT /note="ortholog of Bordetella pertussis (BX470248) BP2687" FT /db_xref="GOA:Q7WGX3" FT /db_xref="InterPro:IPR006055" FT /db_xref="UniProtKB/Swiss-Prot:Q7WGX3" FT /protein_id="CAE33930.1" FT /translation="MAANENRLVWLDMEMTGLDPEKERIIEVAVVVTEADLTVVAEGPV FT LVVHQPDSLLDAMDNWNKSTHGKSGLIEKVKASTLGEAQAEQILLEFLAEHVPAGKSPL FT CGNTISQDRRFMYAYMPNLERFFHYRNLDVSTLKELARRWAPAVYKGFDKKSRHEALAD FT IYESIDELKYYREHLLKV" FT misc_feature complement(199856..200371) FT /note="HMMPfam hit to PF00929, DE Exonuclease, score 1e-35" FT CDS 200437..201702 FT /transl_table=11 FT /locus_tag="BB3439" FT /product="putative integral membrane zinc-metalloprotease" FT /note="ortholog of Bordetella pertussis (BX470248) BP2688" FT /db_xref="GOA:Q7WGX2" FT /db_xref="InterPro:IPR001915" FT /db_xref="UniProtKB/TrEMBL:Q7WGX2" FT /protein_id="CAE33931.1" FT /translation="MTAPVPLFTLFFVVLLLADIGVRLWLATRQIRHVAANRQSVPPEF FT APRIGLHSHQRAADYTVARVRLGMLERVYDAAILVALTLLGGLQFIDLWLGQLTQHDFL FT RQLLLLACVPLLLGLLGLPFTLWRQFRLEGRFGFNRMTPALFFSDAVKGVLVALVLGLP FT LAAAVLWLMAGAGAYWWLWAWGLWLGYNLLLLLIYPTFIAPLFNKFTPLNDPELAGRIR FT QLAQRCGFALNGLFVMDGSRRSAHGNAYFTGFGKSRRIVFFDTLLARLNGDEIEAVLAH FT ELGHFARRHIIKRLALSFAGALVFFAALGWLARQPWFYEGLGVLPNLGGRNDAMALVLF FT FLVVPVFTFMLTPLASWYSRRDEFEADRYAAAQSSPDRLVSALVKLYDDNAATLTPDPV FT HSAFYDSHPPAAVRIRHLMAGA" FT misc_feature join(200449..200517,200662..200730,200758..200826, FT 200887..200955,200983..201051,201319..201387, FT 201445..201513) FT /note="7 probable transmembrane helices predicted for FT BB3439 by TMHMM2.0 at aa 5-27, 76-98, 108-130, 151-173, FT 183-205, 295-317 and 337-359" FT misc_feature 201094..201687 FT /note="HMMPfam hit to PF01435, DE Peptidase family M48, FT score 3.1e-46" FT CDS 201699..202601 FT /transl_table=11 FT /locus_tag="BB3440" FT /product="putative ATP/GTP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2689" FT /db_xref="GOA:P67679" FT /db_xref="InterPro:IPR004881" FT /db_xref="UniProtKB/Swiss-Prot:P67679" FT /protein_id="CAE33932.1" FT /translation="MSSNQAEGLIIAAHGRHYTVELADGSLRQCFPRGKKNGPAVGDRV FT RITPQGRDEGAIEAVLPRRNLLFRSDEMRVKQFAANVDQLLIVVAVEPTFADDLTGRSL FT AGAWSADIEPVIVLNKIDLPNGLDAARARLEPLRRLGVPVIELSAQDHAMVHERLAPRL FT AGRTSLLLGQSGMGKSTLLNTLVPHAQAATREYSAALDMGRHTTTSTRLYHLPEPGGDL FT IDSPGFQAFGLQHLNGEQILRGFPEFAPHIEHCRFYNCTHRHEPGCGVLAALQAGQIDA FT GRYALYLRILDENAAARPY" FT misc_feature 202107..202574 FT /note="HMMPfam hit to PF03193, DE Protein of unknown FT function, DUF258, score 1.7e-48" FT misc_feature 202212..202235 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(202778..203932) FT /transl_table=11 FT /locus_tag="BB3441" FT /product="probable oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0977" FT /db_xref="GOA:Q7WGX0" FT /db_xref="HSSP:1LQA" FT /db_xref="InterPro:IPR020471" FT /db_xref="UniProtKB/TrEMBL:Q7WGX0" FT /protein_id="CAE33933.1" FT /translation="MTPPAGVIFPISTARRGAPFFIPAQGASQSGQDLAVKYRKLGHTD FT LDVSLIGLGTMTWGEQNTEAQAHEQLDYALAHGINLVDAAEMYPVPPKPETQGRTESCI FT GSWLARTGRRHEVVLASKAAGPVRDAKRPSHIRDGKTFLDRKNLTQALDASLKRLQTDY FT LDLYQLHWPDRTTNTFGKLAYPWVDDAHTVPIEETLEVLQDFVRAGKVRHVGLSNETPW FT GVARFLQAAEKHGLPKVATIQNPYNLLNRIFEIGLAEFSHREGVGLLAYSPLAMGILSG FT KYLDGARPEGSRLALFTRFTRYSNPQAEAAARDYVMLARDHGLAPAQMALAWVNQRPFV FT SSNLMGATTLAQLKENIESVEVTLSDEVLQGIEAIHARQPNPAP" FT misc_feature complement(202796..203809) FT /note="HMMPfam hit to PF00248, DE Aldo/keto reductase FT family, score 1.5e-46" FT CDS complement(203929..204654) FT /transl_table=11 FT /locus_tag="BB3442" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0976" FT /db_xref="GOA:Q7WGW9" FT /db_xref="HSSP:1NQZ" FT /db_xref="InterPro:IPR000086" FT /db_xref="UniProtKB/TrEMBL:Q7WGW9" FT /protein_id="CAE33934.1" FT /translation="MSDSAPSRPRRTPVRPLFDPMAQPWETANQGLARVDERLLTPPEL FT RSSLRPADHWRLDPLCAAEPRAPGREGSLVAAAVLIPLVMRADGVRVMLTQRAAHLHDH FT AGQVSFPGGRIEVSDATPVAAALREAQEETGLPVQQVEVLGSMPQYFTATGFAITPVVS FT LVQPDFELAPDAFEVAEVFEVPLSFLMDPANHRLYRAALPDGYVRQYYAMPWQRYFIWG FT ATAGMLRNLYQTVREALPG" FT misc_feature complement(204031..204432) FT /note="HMMPfam hit to PF00293, DE NUDIX domain, score FT 6.6e-16" FT CDS complement(205063..205443) FT /transl_table=11 FT /gene="rplS" FT /locus_tag="BB3443" FT /product="50S ribosomal protein L19" FT /note="ortholog of Bordetella pertussis (BX470248) BP0975" FT /db_xref="GOA:Q7WGW8" FT /db_xref="InterPro:IPR018257" FT /db_xref="UniProtKB/Swiss-Prot:Q7WGW8" FT /protein_id="CAE33935.1" FT /translation="MNLIAILEQEEIARLTGGNAVTEFAPGDTVVVSVNVVEGTRKRVQ FT AFEGVVIAKRNRGLNSSFIVRKISSGEAVERTFQLYSPQIAGIEVKRRGDVRRAKLYYL FT RSRSGKSARIKEKLVLKKAKSA" FT misc_feature complement(205090..205443) FT /note="HMMPfam hit to PF01245, DE Ribosomal protein L19, FT score 1.1e-53" FT misc_feature complement(205129..205176) FT /note="PS01015 Ribosomal protein L19 signature." FT CDS 205751..206623 FT /transl_table=11 FT /locus_tag="BB3444" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0974" FT /db_xref="GOA:Q7WGW7" FT /db_xref="InterPro:IPR000620" FT /db_xref="UniProtKB/TrEMBL:Q7WGW7" FT /protein_id="CAE33936.1" FT /translation="MSYTSLILVVLAAMAHAAWNLLAKRAAMVGPMFVFAYGLAATILY FT APWVIWVLAHDGMVWSWPVVLCILASSMLHLGYSLCLQRGYQVADLSVVYPIARGTGPL FT LSTMGAFTLLSEPATTTGIAGMLCVVGGVLLIATQGRLGMFRQAQAWIGVRWGVVIGLF FT IAAYTVVDAYGVKMLLIMPVLFDWFTCATRTLMMTPHVLRRRAQYWPAMRGYWHLAIAV FT GVLSPLGYILVLYALRNGAPLSLVAPAREMSMMLGTLAGMFLLREKVGIGRLAGCLAIL FT AGVVLLGSS" FT misc_feature 205751..205801 FT /note="Signal peptide predicted for BB3444 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.888 between residues 17 and 18" FT misc_feature join(205760..205819,205838..205906,205919..205987, FT 206021..206089,206117..206185,206204..206260, FT 206288..206356,206393..206461,206555..206614) FT /note="9 probable transmembrane helices predicted for FT BB3444 by TMHMM2.0 at aa 4-23, 30-52, 57-79, 91-113, FT 123-145, 152-170, 180-202, 215-237 and 269-288" FT misc_feature 205790..206164 FT /note="HMMPfam hit to PF00892, DE Integral membrane protein FT DUF6, score 0.0041" FT misc_feature 206234..206617 FT /note="HMMPfam hit to PF00892, DE Integral membrane protein FT DUF6, score 0.068" FT CDS complement(206631..207011) FT /transl_table=11 FT /locus_tag="BB3445" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0973" FT /db_xref="UniProtKB/TrEMBL:Q7WGW6" FT /protein_id="CAE33937.1" FT /translation="MTIATTLDAATSLPTAVPGRTLGALRRLARAWAGAAVPQRKWPFP FT PTPPGQAQPCTPCADSQPRSAQAVQPAQAQALHAQAELSGAATQAAAQVLSTKAKIIDV FT LLVAVWGAMIPALMWLGAAGGF" FT misc_feature complement(206643..206711) FT /note="1 probable transmembrane helix predicted for BB3445 FT by TMHMM2.0 at aa 101-123" FT CDS complement(207165..208439) FT /transl_table=11 FT /locus_tag="BB3446" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0972" FT /db_xref="GOA:Q7WGW5" FT /db_xref="InterPro:IPR007197" FT /db_xref="UniProtKB/TrEMBL:Q7WGW5" FT /protein_id="CAE33938.1" FT /translation="MASTEHSFSAGFGSPAAAPAALRGRGAVTNVSHRFQQADRVRVDD FT GWANPDYTAGSDAAAFPPVADALGQGGRRAIPIAVEGADASPNTCAQAPAPRTIVQAEE FT ARKMLSRNDSPDIPFDVAANPYRGCEHGCVYCYARPTHAYLGYSPGLDFETRLVAKANA FT VAALRAELARPGYRASPINIGSATDAYQPIERTWRLTRGMLELLLQTRHPLTVVTKNAL FT VERDLDLLQDLARQKLVTVFVSITTLDAAMARTLEPRASAPYRRLQTVRTLAQAGVPVG FT VLVAPVIPFINDESLEHVLQETSAAGACYASYTVLRLPWEVKEVFETWLQAHFPDRAQR FT VLHRIEDLRNGRRNDTAFGSRMRGTGIWADLLRQRFALATRKLGLNRHRPELDTHRFVP FT PLESGLPPARGRREARAQPGQLALF" FT misc_feature complement(207351..207995) FT /note="HMMPfam hit to PF01932, , score 1.3e-33" FT CDS complement(208629..209927) FT /transl_table=11 FT /gene="cysN" FT /locus_tag="BB3447" FT /product="sulfate adenylyltransferase subunit 1" FT /EC_number="2.7.7.4" FT /note="ortholog of Bordetella pertussis (BX470248) BP0971" FT /db_xref="GOA:Q7WGW4" FT /db_xref="InterPro:IPR004161" FT /db_xref="UniProtKB/TrEMBL:Q7WGW4" FT /protein_id="CAE33939.1" FT /translation="MNALNDSFLAGADNGVLRLITAGSVDDGKSTLIGRLLYDSKGVFA FT DQLDAISRAKHKRVAGDGIDFSLLTDGLEAEREQGITIDVAYRYFSTPLRKFIIADAPG FT HEQYTRNMVTGASTADAAIILVDATRAADGRLLAQTKRHSAIARLLGIKHIVVAVNKMD FT LVDWDRAVFERIGAAYGELARRLALPAFHILPLSALHGDNVVNLSPHSPWYEGQPLLTL FT LEGLDLAGDGRDLPLRVPVQWVARHGGERADDFRGYAGRVASGVLRPGDEVVVQPSGVR FT ARVQRVLAFDGELQEAVSGDSVTLILDRDVDVSRGDVLAHAQAPARVGREFDAQLCWLD FT AQPLNPARRYLLKHGTRLTSAKISAVHTRRDIHELQEVPNADGALHMNDIGRVSLLTRE FT ALATDPYAAIAATGAFILIDEATHQTAAAGMLE" FT misc_feature complement(208968..209174) FT /note="HMMPfam hit to PF03144, DE Elongation factor Tu FT domain 2, score 1.5e-09" FT misc_feature complement(209229..209888) FT /note="HMMPfam hit to PF00009, DE Elongation factor Tu GTP FT binding domain, score 8.1e-58" FT misc_feature complement(209670..209717) FT /note="PS00301 GTP-binding elongation factors signature." FT misc_feature complement(209838..209861) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(209980..210888) FT /transl_table=11 FT /gene="cysD" FT /locus_tag="BB3448" FT /product="sulfate adenylyltransferase subunit 2" FT /EC_number="2.7.7.4" FT /note="ortholog of Bordetella pertussis (BX470248) BP0970A" FT /db_xref="GOA:Q7WGW3" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/TrEMBL:Q7WGW3" FT /protein_id="CAE33940.1" FT /translation="MSAVMTRSHLDWLESEAIFILREVAAECARPALLFSGGKDSVVLL FT RLAEKAFRPGRFPFPLLHIDTGHNYDEVIAFRDARAAELGETLLVRSVEDSIARGSVAL FT RRETDSRNAAQAVTLLEAIEELGLDACIGGARRDEEKARAKERIFSFRDEFGQWDPKAQ FT RPELWNLFNTRVHRGENMRVFPISNWTELDVWQYIQRERLALPSIYYSHAREVVRRKGL FT LVPVTRLTPPAEGETVERLAVRFRTVGDISCTCPVASDAADPAAIIAETAVTDITERGA FT TRMDDQTSEASMERRKREGYF" FT misc_feature complement(210145..210795) FT /note="HMMPfam hit to PF01507, DE Phosphoadenosine FT phosphosulfate reductase family, score 2.4e-50" FT CDS complement(210938..211690) FT /transl_table=11 FT /gene="cysH" FT /locus_tag="BB3449" FT /product="phosphoadenosine phosphosulfate reductase" FT /EC_number="1.8.4.8" FT /note="ortholog of Bordetella pertussis (BX470248) BP0970" FT /db_xref="GOA:Q7WGW2" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/TrEMBL:Q7WGW2" FT /protein_id="CAE33941.1" FT /translation="MMAARPLAAIAGLTAAAAARWHDLQSRLAIIARQYPDAALASSLA FT AEDMVLTHAIYAGGLDLEVFTLDTGRLHTETLGVLDAVATRYGRAITVYRPDAAAVQAH FT VDAHGMHAFYESVALRKACCEIRKVEPLRRALAGRGAWITGQRRAQSATRGELPDEERD FT PVFGLYKFNPLAAWNEADVWSVIRALGIPYNPLHDQGYPSIGCEPCTRAVRPGEDVRAG FT RWWWESSDSKECGLHAGNRVIQIAARPA" FT misc_feature complement(210980..211576) FT /note="HMMPfam hit to PF01507, DE Phosphoadenosine FT phosphosulfate reductase family, score 6.4e-67" FT misc_feature complement(211640..211690) FT /note="Signal peptide predicted for BB3449 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.951) with cleavage site FT probability 0.426 between residues 17 and 18" FT CDS complement(211687..212751) FT /transl_table=11 FT /gene="cysA" FT /locus_tag="BB3450" FT /product="sulfate transport ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0969" FT /db_xref="GOA:Q7WGW1" FT /db_xref="HSSP:1B0U" FT /db_xref="InterPro:IPR005666" FT /db_xref="UniProtKB/Swiss-Prot:Q7WGW1" FT /protein_id="CAE33942.1" FT /translation="MSIEVRGLSKRFGAFRALDEVSLHIETGELVALLGPSGCGKTTLL FT RIIAGLESADAGSVLFAGEDATDVDVRQRQVGFVFQHYALFKHMTVFENVAFGLRVRHR FT SQRPSEARIRAKVLDLLGLVQLDWLADRYPAQLSGGQRQRIALARALAVEPRVLLLDEP FT FGALDAKVRKELRRWLRRLHDELHVASVFVTHDQEEALEVADRVVLMNAGRIEQVGSPR FT EVWERPATPFVYGFLGDVNQLHGHATRGVWRLGEVALPAPDLPEADNQRAIAYVRPHDI FT DLARAGTAAPGIPVRLNHVYLAGPSAYLELARQDDQAIIEAQVPEPLFRSLGLKEGEAL FT LAQPRRARVFAVQP" FT misc_feature complement(212113..212670) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1e-69" FT misc_feature complement(212299..212343) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(212626..212649) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(212776..213675) FT /transl_table=11 FT /gene="cysW" FT /locus_tag="BB3451" FT /product="sulfate transport system permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0968" FT /db_xref="GOA:Q7WGW0" FT /db_xref="InterPro:IPR005667" FT /db_xref="UniProtKB/TrEMBL:Q7WGW0" FT /protein_id="CAE33943.1" FT /translation="MSPADHRPAHLTEPRWVRALLLGAALAFLTLFLLVPLAAVFTEAL FT RKGWQLYLAAIVEPDAWSAIRLTLLVAAIALPVNLVFGVAAAWAVTKFQFRGKQLLITL FT IDLPFSVSPVVAGMVFVLLFGSQGWFGSWLQDHDWKIVYAVPGVILATLFVTFPFIARE FT LIPLMQAQGSEEEQAALTLGASGWQIFWRVTLPNIKWGLLYGAILCNARAMGEFGAVSV FT VSGQVRGLTNTMTLHVEILYNEYQFAAAFAVASLLALLALVTLAAKQVVEWRNQRLSPR FT QAEAPVHAGALAVRPAAA" FT misc_feature complement(join(212875..212943,213010..213078, FT 213193..213261,213304..213372,213406..213474, FT 213550..213618)) FT /note="6 probable transmembrane helices predicted for FT BB3451 by TMHMM2.0 at aa 20-42, 68-90, 102-124, 139-161, FT 200-222 and 245-267" FT misc_feature complement(212941..213177) FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 6.2e-06" FT misc_feature complement(213088..213174) FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT misc_feature complement(213562..213675) FT /note="Signal peptide predicted for BB3451 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.785) with cleavage site FT probability 0.569 between residues 38 and 39" FT CDS complement(213672..214547) FT /transl_table=11 FT /gene="cysU" FT /gene_synonym="cysT" FT /locus_tag="BB3452" FT /product="sulfate transport system permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0967" FT /db_xref="GOA:Q7WGV9" FT /db_xref="InterPro:IPR005667" FT /db_xref="UniProtKB/TrEMBL:Q7WGV9" FT /protein_id="CAE33944.1" FT /translation="MSLAIPSGSAPTAARRQRPGVLPGFGISMGYAVLYLSLLVLVPLA FT ALPIKSLELGWAGFWDTVTAPRVVASYRLTFGASLLAALVNLVFGTIVAWVLVRYRFPG FT KKLVDALVDLPFALPTAVAGIALTALYSANGWLGAPLQRWFDLKVAFTPLGIVMALIFI FT GVPFVVRTVQPVLEDVERELEEAAASLGAGRWQTIRRVLLPALLPALLTGFALAFARAI FT GEYGSVVFIAGNMPMISEITPLLIISKLEQYDYAGAAAIATVMLALSFALLLVINLLQG FT WQARRGGRQP" FT misc_feature complement(join(213711..213779,213879..213947, FT 214041..214109,214152..214220,214254..214322, FT 214422..214490)) FT /note="6 probable transmembrane helices predicted for FT BB3452 by TMHMM2.0 at aa 20-42, 76-98, 110-132, 147-169, FT 201-223 and 257-279" FT misc_feature complement(213795..214025) FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 1.1e-17" FT misc_feature complement(213936..214022) FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS complement(214563..215597) FT /transl_table=11 FT /gene="sbp" FT /locus_tag="BB3453" FT /product="sulfate-binding protein precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP0966" FT /db_xref="GOA:Q7WGV8" FT /db_xref="InterPro:IPR005669" FT /db_xref="UniProtKB/TrEMBL:Q7WGV8" FT /protein_id="CAE33945.1" FT /translation="MRRNTAGIRGAIVALATVFSLGLPWAVQAQDKQTLLNVSYDPTRE FT LYRAVDEAFIKEYQARAGVDLTVRQSHGGSGRQARSVIDGLDADVVTLALAYDIDAIAD FT RGLLPQDWQKRLPRNSSPYTSTIVFLVRKGNPRQIHDWDDLVKDGVQVITPNPKTSGGA FT RWNYLAAWAYALARNEGSEAKAREFVGQLLSHVPVLDTGARGSTTTFVERGVGDVLLAW FT ENEAFLAREELGPDKFDIVVPSLSILAEPPVAVVDKVVDRKGTRAAAQAYLEYLYTPAA FT QEIIARNFYRPTDETVAARYASRFPKLKLVTIDDPIFGGWRKAQKDHFSDGGTFDQVYQ FT PQRK" FT misc_feature complement(214575..215576) FT /note="HMMPfam hit to PF01100, DE Prokaryotic sulphate- and FT thiosulphate-binding protein, score 6.2e-184" FT misc_feature complement(215106..215132) FT /note="PS00757 Prokaryotic sulfate-binding proteins FT signature 2." FT misc_feature complement(215511..215579) FT /note="1 probable transmembrane helix predicted for BB3453 FT by TMHMM2.0 at aa 7-29" FT misc_feature complement(215511..215597) FT /note="Signal peptide predicted for BB3453 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.975 between residues 29 and 30" FT CDS complement(215787..216428) FT /transl_table=11 FT /locus_tag="BB3454" FT /product="antioxidant protein" FT /EC_number="3.1.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0965" FT /db_xref="GOA:Q7WGV7" FT /db_xref="HSSP:1E2Y" FT /db_xref="InterPro:IPR019479" FT /db_xref="UniProtKB/TrEMBL:Q7WGV7" FT /protein_id="CAE33946.1" FT /translation="MGQLRLGDTAPDFEQKSSIGPLRLYDYLGDSWGVLFSHPADFTPV FT CTTELGYTAKLAGEFAKRNVKVLALSVDPVDSHTKWIDDINDTQSTTVNFPILADDDRK FT VSELYDMIHPNANATLTVRSVFVIDPAKKVRLTITYPASTGRNFDEILRVIDSLQLTDS FT HSVATPVNWKDGEDVIIVPSLKDEAVIKEKFPKGYKALRPYLRITPQPNK" FT misc_feature complement(215970..216413) FT /note="HMMPfam hit to PF00578, DE AhpC/TSA family, score FT 7.5e-55" FT CDS complement(216511..218337) FT /transl_table=11 FT /locus_tag="BB3455" FT /product="probable acyl-CoA dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0964" FT /db_xref="GOA:Q7WGV6" FT /db_xref="HSSP:1BUC" FT /db_xref="InterPro:IPR006092" FT /db_xref="UniProtKB/TrEMBL:Q7WGV6" FT /protein_id="CAE33947.1" FT /translation="MTYATPLQDFRFALNELAGLEEILKLPGFEEVTPDLVDAILEENA FT RFVQQAIAPLNVAGDTKPPVWNDGQVTTTPGFSQGFADYTAGGWQGLQHPQKWGGQGLP FT KVVAAPAGENIQAASLAFSLCPMLTDGVIEALLTVGSEAQRQTYVPKLIGGQWTGTMNL FT TEPQAGSDLAQVATRAVRQDDGSYRLSGQKIFITYGEHDLAENIIHLVLARTPDAPAGV FT KGISLFIVPKYLVNEDGSRGKRNDVWCASLEHKLGIHGSPTAVLLYGAGKGEVGEGAVG FT YLVGEANRGLEYMFIMMNAARYSVGQQGIGVSERAYQHAQAYARERVQGRAIEGSAAPV FT TIAHHPDVQRMLLTMRALTEAARAVSYVAAAAHDKGTHHPDAEVRARNRAFYEYLVPIV FT KGFSTESAVEVASLGIQVHGGMGFIEETGAAQHYRDARILPIYEGTTAIQANDLVGRKT FT LRDGGATAHASIAAMRDTLKAVAAEAQRADTADHTALRVLRDNFDQAIQSYEGAVEFIL FT AHAASNVRAVYSSSVPYLMLAGVVHGGWQMARAALACRRHLAAGSGDAFHRHKLGTALF FT YGAHILPRALALAAAVRAGDVADSCGSMADIA" FT misc_feature complement(216961..217476) FT /note="HMMPfam hit to PF00441, DE Acyl-CoA dehydrogenase, FT C-terminal domain, score 9.2e-51" FT misc_feature complement(217537..217854) FT /note="HMMPfam hit to PF02770, DE Acyl-CoA dehydrogenase, FT middle domain, score 1.7e-08" FT CDS complement(218600..219529) FT /transl_table=11 FT /gene="etfA" FT /gene_synonym="etfL" FT /locus_tag="BB3456" FT /product="electron transfer flavoprotein alpha-subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP0962" FT /db_xref="GOA:Q7WGV5" FT /db_xref="HSSP:1EFP" FT /db_xref="InterPro:IPR018206" FT /db_xref="UniProtKB/TrEMBL:Q7WGV5" FT /protein_id="CAE33948.1" FT /translation="MTTLVIAEHDNAQLKGATLNTIAAASRLGGEVHVLVAGSGAQAVA FT EQAAQAAGVSKVLLADAPQLAEGLAENLAAQVLAVAGGYSHILFAATASGKNVAPRVAA FT KLDVAQISDIIGVESADTFQRPIYAGNAIATVQSGDAVKVITVRTTGFDAVAAQGGSAA FT VEALDAVADSGLSRFVGREVAKSDRPELAGARVVVSGGRGLGSAENFKILDPLADKLGA FT ALGASRAAVDAGYAPNDWQVGQTGKIVAPQLYVAVGISGAIQHLAGMKDSKVIVAINKD FT PEAPIFGVADYGLVGDLFQVVPELTGAL" FT misc_feature complement(218693..218773) FT /note="PS00696 Electron transfer flavoprotein alpha-subunit FT signature." FT misc_feature complement(218711..219526) FT /note="HMMPfam hit to PF00766, DE Electron transfer FT flavoprotein alpha subunit, score 9.5e-122" FT CDS complement(219529..220329) FT /transl_table=11 FT /gene="etfB" FT /gene_synonym="etfS" FT /locus_tag="BB3457" FT /product="electron transfer flavoprotein beta-subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP0961" FT /db_xref="GOA:Q7WGV4" FT /db_xref="HSSP:1EFP" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/TrEMBL:Q7WGV4" FT /protein_id="CAE33949.1" FT /translation="MRSRVSPGNYCYFGDCWMKVLVPVKRVVDYNVKVRVKSDQTGVDI FT ANVKMSMNPFDEIAVEEATRLKEKGAVAEVVAVSCGAAQCQETLRTAMAIGADRAVLVQ FT TDAELQPLAVAKLLKALVDKEQPQLVILGKQAIDDDANQTGQMLAALLDWPQATFASKV FT ELGDGQVTVTREVDGGLETLSLNLPAIVTTDLRLNEPRYVTLPNIMKAKKKPLETVSPQ FT DLGVDPAPRLKTLKVSEPPARQAGIKVPDVATLVDKLKNEAKVV" FT misc_feature complement(219535..220278) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01012, DE Electron transfer FT flavoprotein beta subunit, score 1e-119" FT misc_feature complement(219754..219816) FT /note="PS01065 Electron transfer flavoprotein beta-subunit FT signature." FT CDS complement(220350..221264) FT /transl_table=11 FT /locus_tag="BB3458" FT /product="histone deacetylase family protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0960" FT /db_xref="InterPro:IPR000286" FT /db_xref="UniProtKB/TrEMBL:Q7WGV3" FT /protein_id="CAE33950.1" FT /translation="MYLTHPSCRLHEMGDWHPESPQRLDAISDQLLASGLLPYLQERQA FT PEASRADILRVHTPAYLDSLRAHQPEHGYYAIDADTSMNRHTYEAALRAAGAGVAAVDA FT VLGGEAITAFCSVRPPGHHAERDHAMGFCFLNNVAIAARHALDFHGLQRVALVDFDVHH FT GNGTEHAFAGDPRVLMCSFFQHPFFPNSGADDPAPNMLNVPVAAYTGGASIRTIVREQW FT LPRLHEHRPELILISAGFDAHREDDMAQMGLVEADYAWITDRLVEVADQHCQGRIVSTL FT EGGYNLSALGRSVVAHIRSLSKL" FT misc_feature complement(220356..221264) FT /note="HMMPfam hit to PF00850, DE Histone deacetylase FT family, score 2.6e-84" FT CDS 221284..222429 FT /transl_table=11 FT /gene="mltB" FT /locus_tag="BB3459" FT /product="membrane-bound lytic murein transglycosylase B FT precursor" FT /EC_number="3.2.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0959" FT /db_xref="GOA:Q7WGV2" FT /db_xref="HSSP:1D0K" FT /db_xref="InterPro:IPR011757" FT /db_xref="UniProtKB/TrEMBL:Q7WGV2" FT /protein_id="CAE33951.1" FT /translation="MFNCRRFLQIGTLSALLAGCATSSQTPQAQHLPAQAATGQADRVR FT IGPDKPVSSDEGPATLTPTGELRPDVRAFAEQLAAQRELPLPQVLASLESTRYNATVAR FT LIAPSGASGKKIWRSWLTYRGRFVEPKRIAWGVEFWNANQDLLNRAAQRYGVPASIIAS FT IIGVETLYGRNVGNFRVVDALATLAFDYPDPAKPERADMFRGQLGDFITLALQDKLDPE FT TRGSYAGAIGMPQFMPGSIMRYAVDGDDDGHIDLTNSVADAVMSVGNFLVEHGWQRGLP FT VFAPVALPADPAPLVAGGLTPTLDWNGLQAAGARPAAGAGRGAWQEHPMGIVDLVEEAR FT GTVQYRTATPNFFALTQYNRSYFYATAVADLAAELQARTGY" FT misc_feature 221284..221391 FT /note="Signal peptide predicted for BB3459 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.694 between residues 36 and 37" FT misc_feature 221311..221343 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(222486..223397) FT /transl_table=11 FT /gene="cysM" FT /locus_tag="BB3460" FT /product="cysteine synthase B" FT /EC_number="2.5.1.47" FT /note="ortholog of Bordetella pertussis (BX470248) BP0958" FT /db_xref="GOA:Q7WGV1" FT /db_xref="HSSP:1O58" FT /db_xref="InterPro:IPR001926" FT /db_xref="UniProtKB/TrEMBL:Q7WGV1" FT /protein_id="CAE33952.1" FT /translation="MSTPTYPTIEQTVGNTPLVRLQRIPGAAGQARGNVILAKLEGNNP FT AGSVKDRPALSMILRAEERGEIHPGDTLIEATSGNTGIALAMTAAMRGYRMVLIMPDNL FT SLERRAAMTAYGAELILTPAAKGGMEYARDLATAMQAEGKGKVLDQFGNPDNPRAHIEG FT TGPEIWNQTDGRVTHFVSAMGTTGTIMGVSTYLKSRNAAVQVVGAQPAEGSQIPGIRKW FT PEAYMPKIFDRSLVDAYESIAQAEAETMARRLAAEEGIFAGISSAGALVAALRVAERVE FT NATIVFIVCDRGDRYLSTGVFN" FT misc_feature complement(222522..223373) FT /note="HMMPfam hit to PF00291, DE Pyridoxal-phosphate FT dependent enzyme, score 2.2e-101" FT misc_feature complement(223227..223283) FT /note="PS00901 Cysteine synthase/cystathionine FT beta-synthase P-phosphate attachment site." FT CDS complement(223478..224062) FT /transl_table=11 FT /locus_tag="BB3461" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0956" FT /db_xref="GOA:Q7WGV0" FT /db_xref="InterPro:IPR003583" FT /db_xref="UniProtKB/TrEMBL:Q7WGV0" FT /protein_id="CAE33953.1" FT /translation="MRAPSAAANAGAGKMAAGRIDRSVRHASKEHSMNPFLHDPVARCA FT SAPAWPLVGRGRLWRPRPPGAAARAPAGKAPAGRKPASEPLARWLVMAGCALAAAPAHA FT LDVNTATVDQLETVRGVGPRTARVIIEERQRGGRFLSLEDLSERVSGIGLKKMQSLQAA FT GLTAGPAAPAAGARPEARPAGGPRAKAAAGR" FT CDS complement(224097..225086) FT /transl_table=11 FT /gene="rfaD" FT /gene_synonym="htrM" FT /locus_tag="BB3462" FT /product="ADP-L-glycero-D-manno-heptose-6-epimerase" FT /EC_number="5.1.3.20" FT /note="ortholog of Bordetella pertussis (BX470248) BP0955" FT /db_xref="GOA:Q7WGU9" FT /db_xref="HSSP:1EQ2" FT /db_xref="InterPro:IPR001509" FT /db_xref="UniProtKB/Swiss-Prot:Q7WGU9" FT /protein_id="CAE33954.1" FT /translation="MIVVTGAAGFIGSNLVRGLNRRGIQDIIAVDDLTDGDKFRNLVDC FT SIADYLDKDEFRERVRGGNLPALRAVLHQGACSDTTERNGRYMLDNNYRVTLELFEYCQ FT AERVPFLYASSAAVYGGSSVYVEDPANEHPLNVYGYSKLLFDQVLRTRMDSLTAQVVGL FT RYFNVYGPHEQHKGRMASVAFHNMNQFLAEGHVRLFAGWDGYEDGGQSRDFISVEDVVA FT VNLHFLDNPGQSGVFNCGTGRAQPFNDVAAAVVNTLRAERGEAALPLAELVKKGLLRYI FT PFPDDLKGRYQSYTQADVGRLRAAGFSAPMRDVQTGVSEYVRYWRALK" FT misc_feature complement(224103..225083) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01370, DE NAD dependent FT epimerase/dehydratase family, score 7.2e-13" FT CDS complement(225083..226024) FT /transl_table=11 FT /gene="rfaE" FT /locus_tag="BB3463" FT /product="ADP-heptose synthase" FT /EC_number="2.7.-.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0954" FT /db_xref="GOA:Q7WGU8" FT /db_xref="InterPro:IPR011913" FT /db_xref="UniProtKB/TrEMBL:Q7WGU8" FT /protein_id="CAE33955.1" FT /translation="MNQYPAERIARARVLVVGDVMLDRYWFGEVDRISPEAPVPVVRVA FT RREDRLGGAANVARNVAALGAQVTLIGVVGADEVGHRIERMAAEEGVRTDLVSDTEHPT FT TLKMRVLGRQQQLLRVDFEQHPEPAALDGISAAVARQLAQHDIVVLSDYAKGVLDRVES FT IIAAAVGHSLPVLVDPKGDHYERYRGATLVTPNRAEMREAVGRWKTEDELAERAQRLRL FT DLDLEALLVTRSEQGMTLFTDAGRDHADAAAHEVYDVSGAGDTVLATLAVMRAVGLSWG FT DAMRWANRAGGIVVGKLGTSVVTAAELAGEST" FT misc_feature complement(225104..225994) FT /note="HMMPfam hit to PF00294, DE pfkB family carbohydrate FT kinase, score 1.1e-38" FT misc_feature complement(225800..225871) FT /note="PS00583 pfkB family of carbohydrate kinases FT signature 1." FT CDS complement(226021..227244) FT /transl_table=11 FT /locus_tag="BB3464" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0953" FT /db_xref="GOA:Q7WGU7" FT /db_xref="InterPro:IPR013026" FT /db_xref="UniProtKB/TrEMBL:Q7WGU7" FT /protein_id="CAE33956.1" FT /translation="MDFEPWWLIFVPVLFALGWLAARFDFRQMLRETRTLPDSYFRGLN FT FLLNEQPDRAIDAFVEVAKLDPETTELHFALGSLFRRRGEMERAIRVHQSLLSRSDLPV FT AEREHAQHELAQDFLKAGMLDRAEGAFEQLKDTRYALPALRSLIRIYESEHDWPRAIEA FT VKTLHGLVDEPVPQIVHYYCEQAQAALTAKPVDFDAAHAALDAADHAAGMVERGNAAPA FT KASLVRTAMLRARLAALESDPKRERLYLESILTQAPEFAGLVAEALLTNYRQADQAAAG FT LAMLQQQYQRHASLDLFNVVFRELRVQQGSAPAWAFAREALRHHPSLLGLDRLLEAELA FT SPGAPADAGPVTGADLTLLRSLIHKHTQRLDRYACRSCGFQARRFYWQCPGCNSWETYA FT PRRLEELE" FT misc_feature complement(227179..227232) FT /note="1 probable transmembrane helix predicted for BB3464 FT by TMHMM2.0 at aa 5-22" FT CDS complement(227287..227601) FT /transl_table=11 FT /locus_tag="BB3465" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0952" FT /db_xref="UniProtKB/TrEMBL:Q7WGU6" FT /protein_id="CAE33957.1" FT /translation="MRYLVWALRLLVFVAVLMFALKNTNPVAVTFYADYVVHDVPLIVV FT MLVVFVVGALFGLLLTVPAAMRRRREALRLRREVERLQAAASGTPPVVTPEAVAPMSPL FT " FT misc_feature complement(join(227410..227478,227521..227589)) FT /note="2 probable transmembrane helices predicted for FT BB3465 by TMHMM2.0 at aa 5-27 and 42-64" FT misc_feature complement(227518..227601) FT /note="Signal peptide predicted for BB3465 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.926) with cleavage site FT probability 0.510 between residues 28 and 29" FT CDS complement(227793..228125) FT /transl_table=11 FT /gene="ihfB" FT /gene_synonym="himD" FT /locus_tag="BB3466" FT /product="integration host factor beta-subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP0951" FT /db_xref="GOA:Q7WGU5" FT /db_xref="HSSP:1IHF" FT /db_xref="InterPro:IPR000119" FT /db_xref="UniProtKB/TrEMBL:Q7WGU5" FT /protein_id="CAE33958.1" FT /translation="MAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLS FT QRSPRIGRNPKSGEQVLVPGKQVPHFKAGKELRERVDLVGNDQGDDSSNGSSDPLQSVM FT DMHAMH" FT misc_feature complement(227880..228125) FT /note="HMMPfam hit to PF00216, DE Bacterial DNA-binding FT protein, score 3.1e-29" FT CDS complement(228154..229884) FT /transl_table=11 FT /gene="rpsA" FT /gene_synonym="ssyF" FT /locus_tag="BB3467" FT /product="30S ribosomal protein S1" FT /note="ortholog of Bordetella pertussis (BX470248) BP0950" FT /db_xref="GOA:Q7WGU4" FT /db_xref="InterPro:IPR003029" FT /db_xref="UniProtKB/TrEMBL:Q7WGU4" FT /protein_id="CAE33959.1" FT /translation="MDSNLMSSVSTSAIVGGENFADLFAESLKSQDMKSGEVISAEVVR FT VDHNFVVVNAGLKSEALIPLEEFLNDQGELEVQPGDFVSVAIDSLENGYGDTILSRDRA FT KRLSAWLQLEQALENGELVTGTITGKVKGGLTVMTNGIRAFLPGSLVDLRPVKDTTPYE FT GKTLEFKVIKLDRKRNNVVLSRRQVLEASMGEERQKLLETLHEGAVVKGVVKNITDYGA FT FVDLGGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSLGVKQLGEDP FT WVGLARRYPQGTRLFGKVTNLTDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVTLG FT EEVEVMVLEIDEDRRRISLGMKQCRQNPWEEFATNFKRGDKVRGAIKSITDFGVFVGLP FT GGIDGLVHLSDLSWTESGEEAVRNFKKGDELEAVVLGIDTDKERISLGIKQLEGDPFNN FT FVATHDKGAVVPGTIKSVEPKGAVITLSVDVEGYLRASEISSGRVEDATTVLKAGENIE FT AMIVNIDRKARSIQLSIKARDNAETAETIQRMSEASASSGTTNLGALLKAKLDQQRNDG FT " FT misc_feature complement(228280..228501) FT /note="HMMPfam hit to PF00575, DE S1 RNA binding domain, FT score 1.3e-17" FT misc_feature complement(228538..228762) FT /note="HMMPfam hit to PF00575, DE S1 RNA binding domain, FT score 1.7e-20" FT misc_feature complement(228799..229023) FT /note="HMMPfam hit to PF00575, DE S1 RNA binding domain, FT score 1.2e-25" FT misc_feature complement(229060..229278) FT /note="HMMPfam hit to PF00575, DE S1 RNA binding domain, FT score 6.4e-32" FT misc_feature complement(229327..229539) FT /note="HMMPfam hit to PF00575, DE S1 RNA binding domain, FT score 1.5e-16" FT misc_feature complement(229579..229791) FT /note="HMMPfam hit to PF00575, DE S1 RNA binding domain, FT score 2.1e-07" FT CDS complement(230055..230726) FT /transl_table=11 FT /gene="cmk" FT /gene_synonym="mssA" FT /locus_tag="BB3468" FT /product="cytidylate kinase" FT /EC_number="2.7.4.14" FT /note="ortholog of Bordetella pertussis (BX470248) BP0949" FT /db_xref="GOA:Q9RND6" FT /db_xref="HSSP:1KDO" FT /db_xref="InterPro:IPR011994" FT /db_xref="UniProtKB/Swiss-Prot:Q9RND6" FT /protein_id="CAE33960.1" FT /translation="MAISASAGAAPVITIDGPTASGKGTIAHRVAKQLGWDVLDSGALY FT RLTALAALRRGLPATDEPAVAAVAQALDVRFDGPHVYLEGRDAGHEIRQEEVGNYASRI FT AAYPGVRQALLERQRAFRQPPGLVADGRDMGTVVFPDASLKIFLVADVEARAQRRCKQL FT IEKGISANLDDLLRDMRERDARDTQRAVAPLAPAADAHVLDSSGLTIEQTVQAVLDFWR FT A" FT misc_feature complement(230070..230531) FT /note="HMMPfam hit to PF02224, DE Cytidylate kinase, score FT 1.6e-64" FT CDS complement(230741..232069) FT /transl_table=11 FT /gene="aroA" FT /locus_tag="BB3469" FT /product="3-phosphoshikimate 1-carboxyvinyltransferase" FT /EC_number="2.5.1.19" FT /note="ortholog of Bordetella pertussis (BX470248) BP0948" FT /db_xref="GOA:Q9RND7" FT /db_xref="HSSP:1G6S" FT /db_xref="InterPro:IPR006264" FT /db_xref="UniProtKB/Swiss-Prot:Q9RND7" FT /protein_id="CAE33961.1" FT /translation="MSGLAYLDLPAARLARGEVALPGSKSISNRVLLLAALAEGSTEIT FT GLLDSDDTRVMLAALRQLGVSVGEVADGCVTIEGVARFPTEQAELFLGNAGTAFRPLTA FT ALALMGGDYRLSGVPRMHERPIGDLVDALRQFGAGIEYLGQAGYPPLRIGGGSIRVDGP FT VRVEGSVSSQFLTALLMAAPVLARRSGQDITIEVVGELISKPYIEITLNLMARFGVSVR FT RDGWRAFTIARDAAYRGPGRMAIEGDASTASYFLALGAIGGGPVRVTGVGEDSIQGDVA FT FAATLAAMGADVRYGPGWIETRGVRVAEGGRLKAFDADFNLIPDAAMTAATLALYADGP FT CRLRNIGSWRVKETDRIHAMHTELEKLGAGVQSGADWLEVAPPAPGGWRDAHIGTWDDH FT RMAMCFSLAAFGPAAVRILDPGCVSKTFPDYFDVYAGLLAARD" FT misc_feature complement(230768..232045) FT /note="HMMPfam hit to PF00275, DE EPSP synthase FT (3-phosphoshikimate 1-carboxyvinyltransferase), score FT 7.1e-186" FT misc_feature complement(230966..231022) FT /note="PS00885 EPSP synthase signature 2." FT misc_feature complement(231758..231802) FT /note="PS00104 EPSP synthase signature 1." FT CDS complement(232066..232965) FT /transl_table=11 FT /gene="tyrA" FT /locus_tag="BB3470" FT /product="prephenate dehydrogenase" FT /EC_number="1.3.1.12" FT /note="ortholog of Bordetella pertussis (BX470248) BP0947" FT /db_xref="GOA:Q9RND8" FT /db_xref="InterPro:IPR003099" FT /db_xref="UniProtKB/TrEMBL:Q9RND8" FT /protein_id="CAE33962.1" FT /translation="MSANNSANGQGPLVPVLAVAGVGLIGGSFAAALRHAGQVGTILGV FT GRNPASLARARELGLIDEAVSPEEAAARADLVLLSTPVGGLGAMLARMRDHLRPGCLLT FT DAGSTKSQVVMAARQALGEQVSCFVPGHPIAGGERTGPEAADAGLYVRRAVVLTPLPEN FT AAASVARVRACWHACGAHVVEMDDVAHDRLLASVSHMPHFLAAVYMAQVAGSDDAQARM FT DLAGSGFRDFTRIAAGSPEMWRDIFLSNQAAMQSELAALRRVLDEAEQALGAGDGAGLQ FT ALLERAAHARRNWRKDSK" FT misc_feature complement(232093..232911) FT /note="HMMPfam hit to PF02153, DE Prephenate dehydrogenase, FT score 1.3e-81" FT misc_feature complement(232432..232467) FT /note="PS00436 Peroxidases active site signature." FT misc_feature complement(232870..232929) FT /note="1 probable transmembrane helix predicted for BB3470 FT by TMHMM2.0 at aa 13-32" FT misc_feature complement(232876..232965) FT /note="Signal peptide predicted for BB3470 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.880) with cleavage site FT probability 0.781 between residues 30 and 31" FT CDS complement(233052..234137) FT /transl_table=11 FT /gene="pheA" FT /locus_tag="BB3471" FT /product="p-protein [includes: chorismate mutase and FT prephenate dehydratase]" FT /EC_number="5.4.99.5" FT /note="ortholog of Bordetella pertussis (BX470248) BP0946" FT /db_xref="GOA:Q7WGU3" FT /db_xref="InterPro:IPR018528" FT /db_xref="UniProtKB/TrEMBL:Q7WGU3" FT /protein_id="CAE33963.1" FT /translation="MDDSLQDKLRPLRDRIDAIDAQILDLLSQRARTAQEVGSVKHAAH FT ADGPVLRPEREAEVIRRLQHSNPGPFPKAAVAAVWTEIMSACRGLERGMTVAYLGPQGS FT FSEQAALEHFGHSVQQLPCPSFDEVFRAVEAGQADVGMVPVENSTEGAVNRSLDLLLNT FT PLTILGERSLVIRHCLMSQSGTMDGIKTISAHPQALAQCQGWLTRHYPDLNRVAAASNS FT EAARVAAEDPTVAAIAGEVAAPAWNLRVVAAGIQDDPQNRTRFLAVGHIEPLSSGKDKT FT SLILAVPNRAGAVYDMLAPMAANGVSMTRFESRPARTGQWEYYFYVDVLGHRDDANVAR FT ALAALQAQVAFFKVLGSYPAQ" FT misc_feature complement(233067..233297) FT /note="HMMPfam hit to PF01842, DE ACT domain, score FT 1.3e-09" FT misc_feature complement(233319..233852) FT /note="HMMPfam hit to PF00800, DE Prephenate dehydratase, FT score 8.6e-81" FT misc_feature complement(233862..234128) FT /note="HMMPfam hit to PF01817, DE Chorismate mutase, score FT 2.4e-13" FT CDS complement(234130..235263) FT /transl_table=11 FT /gene="serC" FT /gene_synonym="pdxF" FT /locus_tag="BB3472" FT /product="phosphoserine aminotransferase" FT /EC_number="2.6.1.52" FT /note="ortholog of Bordetella pertussis (BX470248) BP0945" FT /db_xref="GOA:Q7WGU2" FT /db_xref="InterPro:IPR015422" FT /db_xref="UniProtKB/Swiss-Prot:Q7WGU2" FT /protein_id="CAE33964.1" FT /translation="MMARPWNFSAGPSALPEAVLQQAAAEMLDWHGSGMSVMEMSHRGK FT HFVQICDEAEADLRELLGLPADYAVMFMQGGGLGENAIVPMNLMGRRSTPAADFVVTGH FT WSTRSHKEAGRYGDAQIAASAAEATEIDGQAQSSWTWLPPVDTWRVRKDSAYLHLCSNE FT TIGGVEFTEWPDPASLGAPDVPLVVDVSSHFLSRPLDIARAGLVFAGAQKNAGPAGVTV FT VIARRDLLGHALPICPSAFDYANVAADHSRYNTPPTFAIYVMGLVFKWIKAHGGVRGME FT EANRAKAELLYGYLDGSAFYRNPVQPAVRSRMNVPFVLRDESLNDAFLQGAEAAGLMQL FT KGHKSVGGMRASIYNAMPLAGVQALIDYLKEFERRHG" FT misc_feature complement(234169..235221) FT /note="HMMPfam hit to PF00266, DE Aminotransferase class-V, FT score 3.2e-68" FT CDS complement(235263..237896) FT /transl_table=11 FT /gene="gyrA" FT /gene_synonym="parD" FT /gene_synonym="nalA" FT /gene_synonym="hisW" FT /gene_synonym="b2231" FT /locus_tag="BB3473" FT /product="DNA gyrase subunit A" FT /EC_number="5.99.1.3" FT /note="ortholog of Bordetella pertussis (BX470248) BP0944" FT /db_xref="GOA:Q7WGU1" FT /db_xref="HSSP:1AB4" FT /db_xref="InterPro:IPR013758" FT /db_xref="UniProtKB/TrEMBL:Q7WGU1" FT /protein_id="CAE33965.1" FT /translation="MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR FT AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAM FT RYTEIRLAKIAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMA FT TNIPPHNLQEVVDGCLYCLRNPECSIDELIELIPAPDFPTGGVIYGITGVREGYRTGRG FT RVIMRAKTHFEDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESD FT KDGMRLVIELKRGEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLIEYFLQ FT HRREVVTRRTVFQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARSW FT DSSLVREMLARVDGDAAGGVAAFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLT FT GLEQDKIIGEYKDVMATIADLLDILARPERITTIISEELQAIKAEFSTSAKDTRRAEIE FT VNATELDTEDLITPMDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQL FT FIANTHDYLLCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEF FT SEDHYVFMATSRGTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSD FT AGKAVRFDENDVRPMGRNARGVRGMMLEEGQTVIALLVAGDETQSVLTATENGYGKRTP FT ITEYTRHGRGTKGMIAIQTSSRNGRVVGAVLVMPSDEIMLITTGGVLVRTRVAEIREMG FT RATQGVTLISVDDGSSLSGVRRVVESDADADDEDGGEDLGEEGGDQGGDDTGAQGKDSE FT PTEPTE" FT misc_feature complement(236382..237851) FT /note="HMMPfam hit to PF00521, DE DNA gyrase/topoisomerase FT IV, subunit A, score 0" FT CDS 238315..238896 FT /transl_table=11 FT /gene="ompA" FT /locus_tag="BB3474" FT /product="outer membrane protein A precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP0943" FT /db_xref="GOA:Q7WGU0" FT /db_xref="HSSP:1OAP" FT /db_xref="InterPro:IPR006690" FT /db_xref="UniProtKB/TrEMBL:Q7WGU0" FT /protein_id="CAE33966.1" FT /translation="MNKPSKFALALAFAAVTASGAASAQTVDNWRNPFGDVWKNGTNEL FT CWRDAFWTPATGIPGCDGVPVAQKEKPAPMAAKVVFNADTFFDFDKSTLKPEGRQLLDQ FT VAQQAGTIDLETIIAVGHTDSIGTEAYNQKLSERRAAAVKTYLVSKGIDPNRIYTEGKG FT ELQPIASNKTREGRAQNRRVEIEIVGSRKN" FT misc_feature 238315..238386 FT /note="Signal peptide predicted for BB3474 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.983 between residues 24 and 25" FT misc_feature 238570..238857 FT /note="HMMPfam hit to PF00691, DE OmpA family, score FT 7.3e-50" FT misc_feature 238669..238803 FT /note="PS01068 OmpA-like domain." FT CDS 238974..239747 FT /transl_table=11 FT /gene="ubiG" FT /gene_synonym="pufX" FT /locus_tag="BB3475" FT /product="3-demethylubiquinone-9 3-methyltransferase" FT /EC_number="2.1.1.64" FT /note="ortholog of Bordetella pertussis (BX470248) BP0942" FT /db_xref="GOA:Q7WGT9" FT /db_xref="InterPro:IPR010233" FT /db_xref="UniProtKB/Swiss-Prot:Q7WGT9" FT /protein_id="CAE33967.1" FT /translation="MPYPYIEPVGPPTPAPMTTATQSSAPGVNVDQAEVEKFSALAARW FT WDPESEFKPLHAINPLRLGWIQETAGSLSGKRVLDVGCGGGILSESMAVAGAQVTGIDL FT AEKSLKIARLHGLESGVKVDYRAVPVEELATEQPGQYDVVTCMEMLEHVPDPASVVRAC FT AALAKPGGWVFFSTLNRNPKSFLFAIVGAEYVLRLLPRGTHSYDSFIKPSELAASARQA FT GLEPTGMRGMEYNPITQVYSLSANTSVNYLMSTRK" FT CDS 239744..240421 FT /transl_table=11 FT /locus_tag="BB3476" FT /product="phosphoglycolate phosphatase 2" FT /EC_number="3.1.3.18" FT /note="ortholog of Bordetella pertussis (BX470248) BP0941" FT /db_xref="GOA:Q7WGT8" FT /db_xref="InterPro:IPR006346" FT /db_xref="UniProtKB/TrEMBL:Q7WGT8" FT /protein_id="CAE33968.1" FT /translation="MSALILFDFDGTLADTAPDLAAAANRQRTRKGLEPMPYEALRPMA FT SQGARGLLRAALGLLPDHPDYEPTRLQFLEDYAAESTVHSRLFPGIADLLEDIAQRGLS FT WGIVTNKVTYLTLPIVEHLGLTRDSAVLVCGDTTAHAKPHPLPLLHAAEQAGFEAGRCV FT YVGDDLRDIQAAHAAGMPAVAAAYGYVGMEEDVTTWQAEACAASPRELWSAIEPLLPTR FT ATA" FT misc_feature 239747..240307 FT /note="HMMPfam hit to PF00702, DE haloacid FT dehalogenase-like hydrolase, score 3.1e-31" FT CDS 240638..241822 FT /transl_table=11 FT /locus_tag="BB3477" FT /product="putative sugar efflux transpoter" FT /note="ortholog of Bordetella pertussis (BX470248) BP0940" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7WGT7" FT /protein_id="CAE33969.1" FT /translation="MLLPIILLSAAGFTILTTEFLIVGLLPPLARDLQVTVSQAGLLVS FT LFAFTVAAAGPVLTALLANLERKRLFVWVLVLFGLANALAAVSPNIWVMAFARFVPALA FT LPVFWSLASATAVELVGPAYAGRAISIIGFGIVAATVLGIPIGVLISDAFGWRAAFAVL FT TAVAWAKALLLLAYFPKPRTGRQNQRLSTQLRILRDPRLLGHVMLSLLVFTGMFTAYTY FT LADMLERLAGFDGKIVGWTMMAFGGAGILGNWLGGRLVDRSPLGATILFSLIMTAGLLF FT VAQAMQAPYWLALALALWGVAQAALLTVCHVRVIKAAPQAPAFAASLNISGANIGIGLG FT AAVGGHFIDSRGLASLGTVAAVIVLAAVGLAIALVLSRRPSTPHPAAPAPGVEP" FT misc_feature join(240650..240718,240761..240829,240848..240916, FT 240932..241000,241019..241087,241115..241174, FT 241241..241309,241346..241405,241424..241492, FT 241505..241573,241610..241669,241697..241765) FT /note="12 probable transmembrane helices predicted for FT BB3477 by TMHMM2.0 at aa 5-27, 42-64, 71-93, 99-121, FT 128-150, 160-179, 202-224, 237-256, 263-285, 290-312, FT 325-344 and 354-376" FT misc_feature 240650..241765 FT /note="HMMPfam hit to PF00083, DE Sugar (and other) FT transporter, score 0.011" FT misc_RNA 241865..242251 FT /gene="ssrA" FT /product="tmRNA" FT CDS 242402..243070 FT /transl_table=11 FT /locus_tag="BB3478" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Bacteriophage SPBc2 YoqW protein yoqW FT SWALL:O64131 (EMBL:AF020713) (224 aa) fasta scores: E(): FT 1.4e-08, 28.07% id in 228 aa, and to Salmonella typhimurium FT LT2 gifsy-2 prophage protein stm1053 SWALL:Q8ZQ78 FT (EMBL:AE008743) (208 aa) fasta scores: E(): 1.8e-16, 37.91% FT id in 182 aa" FT /db_xref="InterPro:IPR003738" FT /db_xref="UniProtKB/TrEMBL:Q7WGT6" FT /protein_id="CAE33970.1" FT /translation="MCGRIAQKSAPEDYVEILWPNARLIFDDVAGPRYNIPPGTKPLTM FT HRLAGGFEVDRQWWTWRPSGSKYAMNCARLDKILGNKWPWKLLTARGRILVPADGWYEW FT KALDSSPKPAKQPYFIHGAGPLLFAGLSAWRPGAEMDEAHGFAIVTDDAQGGMVDVHDR FT RPVALPPELAREWVDPATPVARAMEILRAGLPETAFSWHPVRQEVGSSKYQLPDAIDPI FT " FT misc_feature 242402..243052 FT /note="HMMPfam hit to PF02586, DE Uncharacterized ACR, FT COG2135, score 4.3e-30" FT misc_feature 242402..281853 FT /note="Prophage" FT CDS 243117..243410 FT /transl_table=11 FT /locus_tag="BB3479" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7WGT5" FT /protein_id="CAE33971.1" FT /translation="MPFRDPLTHAQLRAIRERQPWNPDVVALLWEVKRLRAMMLRAYQL FT SGEFRRPVGVLANCYDEYMAQLVVEPCVLERDADVAEMLNAPAKPRKGIGER" FT CDS complement(243427..244041) FT /transl_table=11 FT /locus_tag="BB3480" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7WGT4" FT /protein_id="CAE33972.1" FT /translation="MDTFFLNFFWVLLGMLISWILKPAYEGFARRKGEIVAELASTREL FT EELKALGRRDVDQQNETHKAKLAGRNSMRAASVEKRLEVHQAAFALWWELRNAVHAEPE FT TLLQCVQRCQSWWVENCLYLAPNAREDFSLAYASASIHRNYLASPANNENDRKALQENW FT ARIMAPGESLLAAVELPPIAEDLRNPADSSIGSNVELPRHN" FT misc_feature complement(243979..244032) FT /note="1 probable transmembrane helix predicted for BB3480 FT by TMHMM2.0 at aa 4-21" FT CDS complement(244069..244530) FT /transl_table=11 FT /locus_tag="BB3481" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7WGT3" FT /protein_id="CAE33973.1" FT /translation="MIPRVARPYLIGAGILAAATVGVWVYGGHQYRAGLAAERAATLER FT QARVERAMQEERDRADAQYRGAVLAREAAQRDLSGVRARLDRLLSEQARKRPETARSSS FT GPDGAGADWIGGFAACYAAYGDLAADAARWADQVNGLQGYVDALRPYPR" FT misc_feature complement(244266..244298) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(244527..245081) FT /transl_table=11 FT /locus_tag="BB3482" FT /product="putative phage lysozyme" FT /note="Similar to Bacteriophage H19B lysozyme R FT SWALL:LYCV_BPH19 (SWALL:Q9ZXB7) (177 aa) fasta scores: E(): FT 0.011, 28.41% id in 183 aa, and to Escherichia coli O157:H7 FT putative lysozyme r of prophage cp-933r z2371 or ecs2741 FT SWALL:Q8X4U1 (EMBL:AE005369) (177 aa) fasta scores: E(): FT 0.012, 28.41% id in 183 aa" FT /db_xref="UniProtKB/TrEMBL:Q7WGT2" FT /protein_id="CAE33974.1" FT /translation="MRPGRRVKGGVAALVASGVLVLASAGLMDFLGRWEGQGQQVVYAD FT RLARGLPTVCKGVTKHTSPYPVVVGDYWSPERCEQVERLVVSKGQLQLADCIQVAITQP FT IFDALSSHAHNFGVPSTCASRAVGLMNAGRLAEGCNALAYGPDGAPVWSYVTDKSGRKV FT FVQGLRNRRLDERQLCLSGLQ" FT misc_feature complement(245013..245081) FT /note="Signal peptide predicted for BB3482 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.989) with cleavage site FT probability 0.688 between residues 23 and 24" FT CDS complement(245060..245302) FT /transl_table=11 FT /locus_tag="BB3482A" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Serratia marcescens phage-holin analog FT protein regA SWALL:Q54422 (EMBL:U31763) (88 aa) fasta FT scores: E(): 1.2, 30.13% id in 73 aa, and to Serratia FT marcescens extracellular secretory protein nucE FT SWALL:Q54418 (EMBL:U11698) (89 aa) fasta scores: E(): 1.2, FT 30.3% id in 66 aa" FT /db_xref="UniProtKB/TrEMBL:Q7WGT1" FT /protein_id="CAE33975.1" FT /translation="MEPQPIVDKVAANVTYVGSGWAVIFGLSANEFAALVGAAVAVVGL FT LVNLWFKWQHLRIARTVAATRKQHEGEELCDLEEE" FT CDS complement(245307..246119) FT /transl_table=11 FT /locus_tag="BB3483" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7WGT0" FT /protein_id="CAE33976.1" FT /translation="MIGVGVCLWSDSTLQSGGHGSRLLLDGKPFDTRAPLSLGSKARIS FT GGRGGDSLSGRLTGGPSRRVKGYLPALPDGKLVARFSSVAELTGVSDAWMGGTSVGGAR FT RAQVFHFRQIDDQKEVQLQIVAGQWTKVVKVRFYDDRDGIKAGVMYARYVEGSQLGLDF FT DIIEARSQEIATAESEIGYGCAAISLVGIQEYVFLTYALEPEVILTVSGANTYIGTTTV FT ESGMVRIGHPLAFGRNGLIKVRAGATLDKHGYALPHRMIVNDGATVLE" FT CDS complement(246119..246382) FT /transl_table=11 FT /locus_tag="BB3484" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7WGS9" FT /protein_id="CAE33977.1" FT /translation="MMKDRFIQYQPSLGGPVSSAFAVTPSDTQDLREVTRALYLGAAGS FT MRVRFADGTEHTYAALAAGRHPLRVVRVFSTGTTATDITGEV" FT CDS complement(246601..247017) FT /transl_table=11 FT /locus_tag="BB3485" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7WGS8" FT /protein_id="CAE33978.1" FT /translation="MSGFFKPRMGHFVMYDQIGRIHQATKGQAHRTQADARSMGLQVLE FT VDDLYSPDHYMVVDGKVVPRPASPITRRGVVLSGVPATPEAPADLMIGQDGYYEVTDSR FT VELEFGEEGSHQITVKRWPYKDWVGTIEHAEDQL" FT CDS complement(247022..250978) FT /transl_table=11 FT /locus_tag="BB3486" FT /product="phage-related conserved hypothetical protein" FT /note="Weakly similar to Bacteriophage D3 Orf26 orf26 FT SWALL:Q9MC95 (EMBL:AF165214) (909 aa) fasta scores: E(): FT 4.8e-23, 25.98% id in 689 aa" FT /db_xref="InterPro:IPR015406" FT /db_xref="UniProtKB/TrEMBL:Q7TTC5" FT /protein_id="CAE33979.1" FT /translation="MPDITIQRDPFRPHLRQETIVAPQGVRLDTVLRREGFIVGRGKSL FT VRTRTFVVQLNGSWKVQSAWHVRLRKHDVVAVVVLPAGGGGSNPLQVVAMAALAAATAG FT VGAWAASAYAGAAGVAATSAAALTVGAGAATAVGLVGGMVVNSLFPPARLPGSLQREKA FT SPTYTLSAQGNMARPMEAIPARYGRYRSYLDFAAQPYTEMVNNQTHLYQLFCVGQGRYE FT IEEIRIEETPIGNFSEVEYEVVEPGGQVTLFPDNVVTSAEVQGIELPAINVEGAGPKGP FT FAANPPGTLASEIAIDILLPKGLFYAAHDGTLESAGTGVNVYARQIDDSGKPIGTTIVL FT GRENIVAATLTPQYRTFRYKVEPGRWEISVERNSGHLAERATRMIRDVTWLGLRSYLPS FT QRTYGNVTMLAVAMRATGNLNQTTARRINIIATRRLRTWDPVQGWSQDLKPTRNPAWAI FT ADACTDREYGRGLPDSRINLAALYRLAKVWDERGDWFDGVFDVSTTFWEAVTQIARAGR FT ALPIYHAGVIDVIRDEPKSVRTQMFTPANIVTRSFSVDYVFPAHDDPDYIIVEFVNERT FT WKDDEVECAWPGAAKRRPYRLRLVGVTGRAQAWREGMALLARNRDQRRFASFQTELEGA FT IPGYADLVEISHDVPKWGLSGIVEDYDPRALLLTTSEPLQWWQGQNHYISLRGRDGGPA FT GPFRVEPGSHEREMRIADLVDGHGLYISTGETEEPTHYTFGPGERRALLAQVMRAVPSE FT GGLWTLDLVNYAPSVHTAELGGQEPEFASPSLLPIVPLGPIVDGVTVFSAPRPGQQIVS FT ATPASGAYRYEFEASDDGGVHWQPLGMAELPSLEVHLRAGSWQVRVRGVGALSGPWKTW FT QGNVSASAAPPPRLSALTAVSQVMAIELAWTVPDAPWISSVEIWESSTSNLGDASLMGE FT FRLPQSRFTRFGLSHGTRIWFWGRIRDEAGQVGPWYPDGQGVPGSASSDAGKILDYLSG FT QIGPEQLTRDLTQTISGMGRNINTVTAKLDQEREERLNQDGALARRVEDAIAANGASAT FT AVKQTSTALSSLDGRLRATWSVQTQVAQDGKVYAAGMALGAYTNERGRVQTSVYFLADR FT FAFLNLANGKISTPFVVQNGQTFLNKAFIGTAWIKSAQIESLDAGKIVVGVMSADRINA FT ESLIAKLASFTTAYVKTAHIGVAQVDTLRLASGAVVTGSHSIISKSLGRGGSELATVAT FT GSLYLPYGGSVVVFMQYAQSGGRFPFGRNTIVSIDGEIIPNALSNPPDGAAMITWISDA FT LPGGKTISWSIKARHPVDGTYYIGGRVAVLAIQR" FT misc_feature complement(join(250544..250612,250631..250699)) FT /note="2 probable transmembrane helices predicted for FT BB3486 by TMHMM2.0 at aa 94-116 and 123-145" FT CDS complement(250971..251360) FT /transl_table=11 FT /locus_tag="BB3487" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Bacteriophage D3 Orf25 SWALL:Q9MC96 FT (EMBL:AF165214) (135 aa) fasta scores: E(): 0.00047, 30.46% FT id in 128 aa" FT /db_xref="InterPro:IPR000064" FT /db_xref="UniProtKB/TrEMBL:Q7TTB0" FT /protein_id="CAE33980.1" FT /translation="MTSSDVNRYIGLMWRLGGRGPDAYDCWGLLRECRERYFEGGIPET FT ALGEQARALYAHKMRTGAWKIVTHPQHGDGVMLRAGNDPHVGIYLDLDGGGVLHALEGR FT GVIFSPMRALFTMGFSQPIFYRIHA" FT CDS complement(251357..251950) FT /transl_table=11 FT /locus_tag="BB3488" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Bacteriophage D3 Orf22 SWALL:Q9MC99 FT (EMBL:AF165214) (163 aa) fasta scores: E(): 0.091, 25.43% FT id in 173 aa" FT /db_xref="InterPro:IPR014974" FT /db_xref="UniProtKB/TrEMBL:Q7TTI7" FT /protein_id="CAE33981.1" FT /translation="MPEWRCSLSRCIYILSRAFVMSLEQALKEAYASAPQDRVVFDTLE FT LRHPAFVDPHGEPTAVRVVLGYEDIRARLETEAPLDGGQDVMFQAGAFRFRLPGFEEGQ FT VPSLLIAIDGASEQIVDHVEAAVQSRFPIYVTYRPYLSTDLSMPQMNPPITMELNKVTV FT TGSSVSGTATLSDVHNWAFPHERYVRERFPGLFR" FT CDS complement(251957..252316) FT /transl_table=11 FT /locus_tag="BB3489" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Bacteriophage D3 Orf21 SWALL:Q9MCA0 FT (EMBL:AF165214) (159 aa) fasta scores: E(): 0.00045, 31.37% FT id in 102 aa" FT /db_xref="UniProtKB/TrEMBL:Q7TTG9" FT /protein_id="CAE33982.1" FT /translation="MPLPVWPAGLPLVEFSRQPISPFQRTEMDSGRSRHRRHSRVYPIH FT APVSFVLDGDQYDAYQRFCSIDLNGYAGWFLMAINGPGGLKLRKVRWLLPVPREERIPG FT DLWRVSGQLETMSDA" FT CDS complement(252326..254926) FT /transl_table=11 FT /locus_tag="BB3490" FT /product="probable phage hk97 tail length tape FT measure-related protein" FT /product="putative phage tail protein" FT /note="Similar to Ralstonia solanacearum probable phage FT hk97 tail length tape measure-related protein rsc1690 or FT rs04085 SWALL:Q8XYR8 (EMBL:AL646065) (957 aa) fasta scores: FT E(): 1.4e-47, 35.26% id in 913 aa, and to Bacteriophage N15 FT gp16 gene 16 SWALL:O64330 (EMBL:AF064539) (838 aa) fasta FT scores: E(): 1.2e-28, 28.1% id in 861 aa" FT /db_xref="InterPro:IPR019125" FT /db_xref="UniProtKB/TrEMBL:Q7TTC7" FT /protein_id="CAE33983.1" FT /translation="MADEVASLVLRVDSTQVKGASTDLDKLAAAGAKAEQATVKVGTAG FT KAAATGLGAMGKAAKAAQAQTAAATLSVGEMRTAMRSLPMQMTDIAVGLSTGQSPFYVL FT LQQGGQLKDLFGGIGPAIKAVGGYVASLITPFTAAAAGAVALAVAYQQGAEEGRRFTAA FT ITLTGNAAGVTESQLAAMANRISDIQGTTGNAAAALTKLVETGKIAGDSIEGLGRAAVL FT AEAATGRSVDEMVKDYERIADAPAEALTKLNERYHFLTLAVYDQVKALEAEGRTQDAAR FT LALNTYAQAMEERYPQVVENIGDLERAWKAVTDVAKGAWDAMLAVGREEALEQKLAQAR FT KNLQSLETSRFRTFLDDDRIKQLRGEIAGLEELDKWQKAAAKSRADQAGAVARGIQARK FT DLDSYLESHKGASLAASMEAENAAFKKATAEFKQNSDEYKKALKLHVARVAQIQRQFAG FT SKGAVASGVRELERAREQEAALRAQLESAVKITSARQELVKFEQRIADLKARDQLSADE FT KSVLANEQALRQQLELNAGLADQITLKKEAVQLKVLERSAQETLIADQQRYNDLLAGLT FT ASPRLREQLHAQQQIYRDFQRQVQRAAEQNEAKEITPQAYADRVRVLKQSLERRLELLA FT DHYNKARLLEKDWKEGARQAFNDYAELVSDVAKLTRSAFANAFSGAENALVKLVVTGKA FT RFADFADSIIADLTRISVRQSITGPLASALGSVFRNAFGSALPATASWAMPELAGRRAM FT GGPTLPRRLYEVAENGPELYDEGGRTYLLAGGDGGHVTPLTHSSYRPSTPVTVNLHGVE FT SQPQVRARPDARGGLTLDLIFRQVKDQLAHDIDSGMGSLPRALERRYGLSRQLA" FT misc_feature complement(254546..254590) FT /note="PS00165 Serine/threonine dehydratases FT pyridoxal-phosphate attachment site." FT CDS complement(254954..255244) FT /transl_table=11 FT /locus_tag="BB3491" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Yersinia pestis hypothetical phage FT protein Ypo2118 SWALL:Q8ZEP2 (EMBL:AJ414151) (73 aa) fasta FT scores: E(): 1.3e-08, 52.05% id in 73 aa" FT /db_xref="InterPro:IPR014915" FT /db_xref="UniProtKB/TrEMBL:Q7TTM4" FT /protein_id="CAE33984.1" FT /translation="MYRPMPDKAQLAEFGLRPDDFPAAVIELWPDNVMPKVVFEAMGSQ FT WRIGFAGPTGLDYGALAGVMRMLGVPPEQEIDVFDGVRVMESAALRMMNKK" FT CDS complement(255262..255591) FT /transl_table=11 FT /locus_tag="BB3492" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Yersinia pestis hypothetical phage FT protein Ypo2117 SWALL:Q8ZEP3 (EMBL:AJ414151) (103 aa) fasta FT scores: E(): 2.7e-07, 36.79% id in 106 aa" FT /db_xref="GOA:Q7TTE9" FT /db_xref="InterPro:IPR014859" FT /db_xref="UniProtKB/TrEMBL:Q7TTE9" FT /protein_id="CAE33985.1" FT /translation="MSNIIFKLQPAPTFTVPVEIPRHGEEPANIKVTFRHKSRDEMKDF FT LERADKSEASQDIALVNEMIAGWDGPDMEFSDEAVGLLIQNYQGAVPALVQAYSLELLQ FT ARRKN" FT misc_feature complement(255505..255534) FT /note="PS00175 Phosphoglycerate mutase family FT phosphohistidine signature." FT CDS complement(255604..256119) FT /transl_table=11 FT /locus_tag="BB3493" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein rsc1689 or rs04083 SWALL:Q8XYR9 (EMBL:AL646065) FT (217 aa) fasta scores: E(): 4.3e-22, 41.07% id in 168 aa" FT /db_xref="InterPro:IPR014918" FT /db_xref="UniProtKB/TrEMBL:Q7TTL9" FT /protein_id="CAE33986.1" FT /translation="MKSGWPELNERVVRAVNTASNTFALEGIDTTKVGRFSKGQGIGTA FT TPVSTWVDLSQVTNVAKTGGEQQFYQWRYVEDRNSRQRQRPTYKSAKFITLTLDYDPAL FT AWYEALKEADAAKDAVVLRAKLPNHDELYYLVYPSFDSDPSMELDVNMQNTATFSMMSD FT FTRYAPLA" FT CDS complement(256374..256874) FT /transl_table=11 FT /locus_tag="BB3494" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Bacteriophage phiYeO3-12 putative 1.45 FT protein 1.45 SWALL:Q9T140 (EMBL:AJ251805) (157 aa) fasta FT scores: E(): 2.6e-06, 36.06% id in 122 aa, and to FT Escherichia coli O157:H7 hypothetical protein z3935 z3935 FT or ecs3504 SWALL:Q8X989 (EMBL:AE005493) (201 aa) fasta FT scores: E(): 2.1e-14, 37.5% id in 144 aa" FT /db_xref="GOA:Q7TTE2" FT /db_xref="InterPro:IPR001471" FT /db_xref="UniProtKB/TrEMBL:Q7TTE2" FT /protein_id="CAE33987.1" FT /translation="MNEARITAERLRSVVHYDPETGKFTRLVRLAQRHNVGDDAAHATA FT NGYQRVGIDGQRYLAHRLAWLYMHGAWPTQHIDHMNGDRSDNRIANLRDVPQAVNMQNR FT RHPQADNKSGYLGVYWERGAKKWRSRVQVAGKAHEVGLFDDPAVAHAAYVAKKRKLHEG FT CSI" FT CDS complement(256882..257304) FT /transl_table=11 FT /locus_tag="BB3495" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Yersinia pestis hypothetical phage FT protein Ypo2115 SWALL:Q8ZEP5 (EMBL:AJ414151) (135 aa) fasta FT scores: E(): 5.8e-10, 34.58% id in 133 aa, and to Rhizobium FT loti hypothetical protein Mlr8015 SWALL:Q984G5 FT (EMBL:AP003013) (137 aa) fasta scores: E(): 8.8e-06, 33.91% FT id in 115 aa" FT /db_xref="UniProtKB/TrEMBL:Q7TTM0" FT /protein_id="CAE33988.1" FT /translation="MSQDLIRAAFEKRLSDWAKARTPALPVAWQNTKFTPPAAGVYLRA FT YVMPAATISRDAAGDHRQYRGVFQVNVVMPIGDGSRSAEQVAAELDALFPVNLVMQSGG FT LAVRVRTPISNGQPTTGDADHTVPISLGYDVQFYPE" FT CDS complement(257301..257699) FT /transl_table=11 FT /locus_tag="BB3496" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Yersinia pestis hypothetical phage FT protein Ypo2114 SWALL:Q8ZEP6 (EMBL:AJ414151) (194 aa) fasta FT scores: E(): 1.8e-08, 36.93% id in 111 aa" FT /db_xref="UniProtKB/TrEMBL:Q7TTI9" FT /protein_id="CAE33989.1" FT /translation="MSFTADLGKFVARAKGNVDTATRQATVLLAQGVILKSPVDTGRFR FT ANWQFSAAGVQRGTTMAIDPGGQVTLHRLVAEIRQTAAGGVTYLSNSLPYAVRLENGWS FT KQAPQGMVKLTVQEFQQYVSQAAKDANK" FT CDS complement(257696..258091) FT /transl_table=11 FT /locus_tag="BB3497" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Rhizobium loti hypothetical protein FT Mlr8012 SWALL:Q984G8 (EMBL:AP003013) (130 aa) fasta scores: FT E(): 6.8, 26.82% id in 123 aa" FT /db_xref="UniProtKB/TrEMBL:Q7TTF8" FT /protein_id="CAE33990.1" FT /translation="MATFDYADMAATAQELLDEFGGPVTVRQIVTGEYDPDLGQASTTT FT VDNDGIGALFDYTAQAAGLANMAGSVIETGDKQMYLAPELAAGGAMPEPKPADLVLALG FT ATWRVVTVKTLAPAGLVLLFELQLRQA" FT CDS complement(258091..258291) FT /transl_table=11 FT /locus_tag="BB3498" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7TTK6" FT /protein_id="CAE33991.1" FT /translation="MGNFLRLVLPTPTDAPGLQDCRGIRLYTADGAPIPGLVAVKLEAG FT TDEPIWRATLIMDVNVSGKPD" FT CDS complement(258293..258775) FT /transl_table=11 FT /locus_tag="BB3499" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Yersinia pestis hypothetical phage FT protein Ypo2111 SWALL:Q8ZEP9 (EMBL:AJ414151) (176 aa) fasta FT scores: E(): 4.1, 26.94% id in 167 aa" FT /db_xref="UniProtKB/TrEMBL:Q7TTJ4" FT /protein_id="CAE33992.1" FT /translation="MPLIVEDGSGLANADSYVSVADCQAYAADHGLAFAGEAAALEAAL FT RNATLYLDGEYTYRGERATDIQALEWPRTVATGVPREVVNACCELAARALKSPLWQDVS FT GTTVGAAIEKTVGPITTKYANAAGARNDGQTRYAGVTAMLRRWLSSYGSSVKLVRC" FT CDS complement(258838..259095) FT /transl_table=11 FT /locus_tag="BB3500" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7TTJ2" FT /protein_id="CAE33993.1" FT /translation="MKAKLPIWYLPGPFYRYEQDVKAEAAKAGVRIVDANATEDRKGAA FT KDVPKVTLKPEYRPKGKAEAAKEKELEPTPKDPVKDPAKA" FT CDS complement(259105..260073) FT /transl_table=11 FT /locus_tag="BB3501" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Yersinia pestis putative phage protein FT ypo2110 SWALL:Q8ZEQ0 (EMBL:AJ414151) (401 aa) fasta scores: FT E(): 1.1e-09, 27.98% id in 318 aa, and to Bacteriophage FT SPP1 coat protein 13 SWALL:Q38582 (EMBL:X89721) (324 aa) FT fasta scores: E(): 0.061, 25.75% id in 198 aa" FT /db_xref="UniProtKB/TrEMBL:Q7TTI3" FT /protein_id="CAE33994.1" FT /translation="MSISQMQVFNKYFMPAIIETLGQQIQKFNAASRGAIMLTTAGFEG FT DFLQESFYQAIHGARRRVDRYAANGSASPTDLTQLKHSSVKVAGGFGPIRYEPSQMTWL FT EKPTAEGIEVASRHFAEALLQDQLNTAIAALVAAISNQALATVNVSAKTGLNYSVLNDA FT HAKFGDSSGLIVANVMSGQVYHKLIGQNLVNAQQLFEYGAVTVVDILGKTVVVTDAPAL FT YATGTPNLQKVLGLVAGAATVSDGGDLITNIETSNGKERIETTFQADYTFGLGLKGYTW FT DEATGGKSPTDAELATGTNWDKVATDIKHTAGVIAIGDASK" FT CDS complement(260100..260702) FT /transl_table=11 FT /locus_tag="BB3502" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7TTE1" FT /protein_id="CAE33995.1" FT /translation="MPLDRNDPEVKALIEEVTAEATEALSAKNKELIAELRTAKAKAKG FT SEIDPEEHARLQTQVEELTGKLEKATKDSARQIEKLTKDLTEKEGALTQHLIDGGLSTA FT LAKAGVAPHFMDAVKAMLRSQTSIKDGAAVIGDKLLDDHVMEWASTDQGKHFITAPANT FT GGGGQGGNGGGKCTGNMGGSREDRVAALKAKFPELSG" FT CDS complement(260826..261074) FT /transl_table=11 FT /locus_tag="BB3503" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7TTL8" FT /protein_id="CAE33996.1" FT /translation="MCMPLHLVPDAPKPAETEKDRIRKRIKALPKPKDMIQCHRCGARE FT VIETRIGVFESGRSWSGGTKVLLCALCFVRGERVVLK" FT CDS complement(261074..261988) FT /transl_table=11 FT /locus_tag="BB3504" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Yersinia pestis hypothetical phage FT protein ypo2108 ypo2108 or y2207 SWALL:Q8ZEQ2 FT (EMBL:AJ414151) (370 aa) fasta scores: E(): 1.4e-40, 39.14% FT id in 350 aa" FT /db_xref="InterPro:IPR017029" FT /db_xref="UniProtKB/TrEMBL:Q7WGS7" FT /protein_id="CAE33997.1" FT /translation="MRYSNGVVRRIIALLNRVDIDLAEQVARAMERLPASAFTVARLDA FT VLKDVRNLNAEAYRQVRGELEKDLRDLAGYEVGYQSQLFESLGIEFTTRGVTAGQVYVG FT AMAQPFQGRLLREWMAGLESGRASRIRDAVRMGYVEGQTIQQVVQRVRGTRAKGYADGL FT LEIDRRNAEAVVRTAISHTAGLARDRWYEANDDIIGALVWVSTLDSRTSQMCRLRDGLQ FT YTTDHKPIGHRVPWGAGPGKLHWCCRSGSVPIQDDILGPTRGALFRKGGVELESFYNDR FT GVYLTLAELRRKDAAAFARAGVK" FT CDS complement(262017..263435) FT /transl_table=11 FT /locus_tag="BB3505" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Bacteriophage MB78 60 kDa protein gp62 FT SWALL:Q9T0Q3 (EMBL:Y19202) (540 aa) fasta scores: E(): FT 2.1e-31, 31.2% id in 455 aa" FT /db_xref="UniProtKB/TrEMBL:Q7TTF7" FT /protein_id="CAE33998.1" FT /translation="MPVDSKHPLWTASQPRWERCRTALQGQDAVHAAGTKYLPKLAGQE FT QEEYDAYKGRALFYGATARTEEALIGMVFRKEPTVTLPAALQPMIEDADLAGTPVDTFI FT ENVVKEVIDVTRVGVLVDYPVASGEFMTVGQAQAVGLRPYLATYKAEAIINWRTARVSG FT VNQLVLVVLAETYTEQKDEFTAEEKTQYRVLDLADGAYRVRIYRTDLNTPAFEYTPMMN FT GKRLPYIPFVLIGRNGEAIDPQKPVLLDLVDVNMSHYRGTADYEHALHFTALPTAVVTG FT HELQAGQSLKIGSSEAWVFSEAEARAQYLEFSGQGLDSIKVSLERKEGMMATLGARILA FT PEKRDAEAAETAKIHRAGENSVLGGIALGVGRSLAKAFRWAAEWAGAGSGTVEVKLNTE FT FFPVGLTAQDLTALVGALQAAAISPETFYDNMRRGGIIDDGVTFEEEQARIEAAGPALG FT TLGGQDGQPANRAV" FT CDS complement(263438..264715) FT /transl_table=11 FT /locus_tag="BB3506" FT /product="putative phage terminase" FT /note="Similar to Bacillus subtilis pbsx phage terminase FT large subunit xtmB SWALL:XTMB_BACSU (SWALL:P39786) (433 aa) FT fasta scores: E(): 0.2, 21.58% id in 417 aa, and to FT Yersinia pestis hypothetical 47.8 kDa protein y1030 or FT ypmt1.24C SWALL:O68741 (EMBL:AF074611) (418 aa) fasta FT scores: E(): 2.6e-17, 27.75% id in 436 aa" FT /db_xref="InterPro:IPR004921" FT /db_xref="UniProtKB/TrEMBL:Q7TTC2" FT /protein_id="CAE33999.1" FT /translation="MPSLNQPQARFLALPHKFRAFVAGFGSGKTWVGGAGLCRHAWEFP FT RVNSGYFAPTYGQIRDIFYPTIEEVAHDWGLAAKINESNKEVHLFAGRKYRGTVICRSM FT EKPGDIVGFKIGKGLIDELDVMKTDKAALAWRKIIARLRHTAPGLINGVDVTTTPEGFK FT FVYQQFVKQVRERPDLVALYGLVQASTYENGKNLPEDYIPSLRASYPPQLIAAYLRGQF FT TNLTSGSVYPNFDRRLHHTDAAEEPHEELHIGMDFNVLNMTATVNVIRAGLPLTVGELT FT KVRDTPEMARMLKERFKDKGHGVTIYPDASGGNTSSKNASESDLSILRKAGFTVRVNSR FT NPAVKDRINAVNGMLLNDEGARRWLVNTDRCPTLTEALEQQAYDKNGEPDKSTGHDHPN FT DAQGYFLVHRYPITPTGMSRIKLTGT" FT misc_feature complement(264626..264649) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(264702..265073) FT /transl_table=11 FT /locus_tag="BB3507" FT /product="phage-related putative DNA binding protein" FT /note="Similar to Lactobacillus delbrueckii putative DNA FT binding protein SWALL:Q8VN11 (EMBL:AJ421486) (112 aa) fasta FT scores: E(): 0.0039, 31.81% id in 88 aa" FT /db_xref="UniProtKB/TrEMBL:Q7TTB1" FT /protein_id="CAE34000.1" FT /translation="MARPKKELPDLGQIEALASKGLNEEQIASALGISYSTLRRHKASN FT EQLQAALKKGKALGIADVSSALYDAAVGGNVTAMIFYLKNRSPDSWRDKPDSTNDDNAP FT PPVKVVIEVKDASVPDAEP" FT CDS complement(265392..265832) FT /transl_table=11 FT /locus_tag="BB3508" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7TTH4" FT /protein_id="CAE34001.1" FT /translation="MKTPKLLLDRLPSDFHARLENWGEVMRSRPHYAVSPTYEVCRRLA FT KRAGQGAWGGEEDMRELDESDAGLIEAAWRNSVYRMLHQHRDILRAHYVTRSYWRATCR FT ALDLRSREYDDVLVRAVSNFEDFVARYAVVMHNPAQDRPTTV" FT CDS complement(265829..266032) FT /transl_table=11 FT /locus_tag="BB3508A" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7TTF6" FT /protein_id="CAE34002.1" FT /translation="MTWARRSERGDPLKVLERRQEPPPLRSCAGCAHIRLVKSEFDGRR FT ILACGHGMQVGQRCRLFEERGR" FT CDS complement(266029..266712) FT /transl_table=11 FT /locus_tag="BB3509" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to bacteriophage WO hypothetical 16.7 kDa FT protein gp11 SWALL:Q9JMN0 (EMBL:AB036666) (151 aa) fasta FT scores: E(): 1.7e-13, 36.61% id in 142 aa, and to Ralstonia FT solanacearum putative bacteriophage-related protein rsc3228 FT or rs02445 SWALL:Q8XUG0 (EMBL:AL646074) (154 aa) fasta FT scores: E(): 1.1e-21, 46.35% id in 151 aa" FT /db_xref="GOA:Q7TTF0" FT /db_xref="UniProtKB/TrEMBL:Q7TTF0" FT /protein_id="CAE34003.1" FT /translation="MTHVDLIAGQPAGVPLDPLAGTLAGSHARVPTFDLEKINTDVADP FT WARGGAETAPDAAPRRANAGSTVVPELGPNVTILALDLGTKLGWAVRGRDGRTSHGTEV FT FTPRASWSPGQRWLRARSFLVEVITQRQVHAIAYEDVKRHTGTDAAHAYGAFLCIVEML FT ADSHRLRLLPVGVGTIKKHWTGKGNADKADMIAEAKARGFRPETDNDADALAILSWAVA FT QERAA" FT CDS complement(266709..267650) FT /transl_table=11 FT /locus_tag="BB3510" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="GOA:Q7TTB6" FT /db_xref="InterPro:IPR007694" FT /db_xref="UniProtKB/TrEMBL:Q7TTB6" FT /protein_id="CAE34004.1" FT /translation="MSQIISSNDVDFQAYMAEAEPQAKVLAAEAWRDDLVRTVEHGDQI FT TGAKLPWSKTHDLLRFRPGEVTLWQGINGHGKSELLGQACIGFATQGERVCIASFEMKP FT QATLKRMLRQTAMNARPGVQAVDRLIDWSRDRLWLYDQQGTVTPAMLYAVIRYCADRLK FT VRHMVIDSLMKCVRGEDDYNGQKDFVDMLCTLARDLRMHIHLVHHAKKGENEDQVPGKF FT SAKGSGAIVDQVDQMLTVWRNKKKERIAEAELRKDGEVSADTHDSPDTLLICDKNRHGE FT WEGRIQLWRHADSLQFTGDKRRQPLDMIGALA" FT misc_feature complement(267417..267440) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(267647..268018) FT /transl_table=11 FT /locus_tag="BB3511" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7TTE8" FT /protein_id="CAE34005.1" FT /translation="MIGHQSLIAARMGGYRPTDVWLTCLTAEQPCGRFTHPEAQLGQMT FT NGRWVGFPDIHIHDDENAAALDLRVVVGLVVHIVAPSRSRAMQLLRRVRDFSPAKAIAS FT GEWGILLWDPAADLQELRV" FT CDS complement(268015..268839) FT /transl_table=11 FT /locus_tag="BB3512" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Salmonella typhi hypothetical protein FT Sty2063 sty2063 SWALL:Q8Z5Z8 (EMBL:AL627272) (262 aa) fasta FT scores: E(): 1.5e-07, 24.43% id in 266 aa, and to FT Escherichia coli O157:H7 hypothetical protein z2397 z2397 FT or ecs1944 SWALL:Q8X8R8 (EMBL:AE005370) (262 aa) fasta FT scores: E(): 1.7e-06, 25.46% id in 267 aa" FT /db_xref="UniProtKB/TrEMBL:Q7TTF4" FT /protein_id="CAE34006.1" FT /translation="MANDWIKMRTDLYRDPRICVMADILMNEDGELARYVNQHCQRHMS FT VTRNVMRNVTVGALVSVWGVMRLRGKAEGTDLVCRAVTTSVLDDIADLPGMGAAMEAVG FT WVVSTAEGLVFPRFFEDHNVDPDASPKSKSAARQQRYRERQKLESDVTRNVTRNVTRDA FT KVTPREEKSREEKDNPQSPLPGAEGWRLPDWIPADPWRQFEEMRRKKKKPMTDAARKLA FT VTKLDALRAAGHDVATMMDQSILHAWDTFYPPKADAALQGALGSDQPWTGAV" FT CDS complement(268839..269252) FT /transl_table=11 FT /locus_tag="BB3513" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Bacteriophage phiE125 gp63 63 FT SWALL:Q8W6N7 (EMBL:AF447491) (112 aa) fasta scores: E(): FT 9.3e-12, 45.09% id in 102 aa, and to Bacteriophage HK97 FT gp66 66 SWALL:Q9MCN9 (EMBL:AF069529) (96 aa) fasta scores: FT E(): 1.1, 30.76% id in 65 aa" FT /db_xref="UniProtKB/TrEMBL:Q7WGS6" FT /protein_id="CAE34007.1" FT /translation="MLRRTPLQRKTPMSRLSTPMSRSVIKRRAPKKRPGYHDPKYLAAC FT RGERCYQQFAGCCSYKGDPTVVPAHQNQGKGTGLKVPDRFTVPACYHCHTLYDQSGLDR FT EHKRATWDWGYTRWEPVCAAKLTANDDKMKEAA" FT misc_feature complement(268968..268985) FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT CDS complement(269252..269707) FT /transl_table=11 FT /locus_tag="BB3514" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Bacteriophage 933W hypothetical 17.4 kDa FT protein l0093 SWALL:Q9T207 (EMBL:AF125520) (148 aa) fasta FT scores: E(): 0.017, 27.33% id in 139 aa, and to Yersinia FT pestis putative phage protein ninb or ypo2089 SWALL:Q8ZER6 FT (EMBL:AJ414151) (142 aa) fasta scores: E(): 0.00066, 31.34% FT id in 134 aa" FT /db_xref="InterPro:IPR008711" FT /db_xref="UniProtKB/TrEMBL:Q7WGS5" FT /protein_id="CAE34008.1" FT /translation="MRQRMLNPKSFLLIGASQQAAAQAFLANLPLDADEPLEVVVRERQ FT KPRRMSQNALMWAGPLRDISEQAWVQGQRFAAEVWHEQFKRDYLPEEFDPELCLEGYRK FT WDFTPRGDRVLVGSTTMLTRRGMTQYLQMVEAAGAALGVQFGAREGQ" FT misc_feature complement(269642..269707) FT /note="Signal peptide predicted for BB3514 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.915 between residues 22 and 23" FT CDS complement(269707..270018) FT /transl_table=11 FT /locus_tag="BB3515" FT /product="phage-related transcriptional transcriptional FT regulator" FT /note="Similar to Bacteriophage D3 CII SWALL:Q37905 FT (EMBL:AF165214) (102 aa) fasta scores: E(): 0.077, 27.18% FT id in 103 aa, and to Salmonella typhimurium, and Salmonella FT typhi hypothetical 13.7 kDa protein stm2627 or stm1013 or FT sty1021 SWALL:O84891 (EMBL:AF001386) (124 aa) fasta scores: FT E(): 0.00011, 40.21% id in 92 aa" FT /db_xref="GOA:Q7WGS4" FT /db_xref="InterPro:IPR007933" FT /db_xref="UniProtKB/TrEMBL:Q7WGS4" FT /protein_id="CAE34009.1" FT /translation="MSTQPVSADKLESTRKNGARIQAEVLRRLADVTQERAADCMGLDA FT STLSRFKDSLDRFCQLLAALDMQIAPTDSVVVSRDDLQALKRMAFKYLQAEIESEERG" FT CDS complement(270023..270295) FT /transl_table=11 FT /locus_tag="BB3516" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7WGS3" FT /protein_id="CAE34010.1" FT /translation="MPRPGNSGNADRSRGQGFSPVSGRHGSVHRRAGGVGALPGPAVAL FT CAQLVEQVHHCLFRRVIEGTPGYLLGGSKQLFRICHFTFPYCPEG" FT CDS complement(270303..270479) FT /transl_table=11 FT /locus_tag="BB3517" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7WGS2" FT /protein_id="CAE34011.1" FT /translation="MELVDEGPGSNREGLACTFAAVLFVQCLRLSLEDCEEGIPRLDEL FT CFCHENSSCGESW" FT CDS complement(270463..270687) FT /transl_table=11 FT /locus_tag="BB3518" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7WGS1" FT /protein_id="CAE34012.1" FT /translation="MVNPIEPGDIPHEIQRDVVAAAIEAAAFALRQGFEDDPAKAARLV FT AEAAVVAWEVVNGVSSPAPSPGAADGTRR" FT CDS complement(270925..271128) FT /transl_table=11 FT /locus_tag="BB3519" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7WGS0" FT /protein_id="CAE34013.1" FT /translation="MDGEAATRFWKSNRSAWRARCAARSAMNPNTDRRRRASLPRVART FT LLLLGPLGVAVVLLAVAGRGRR" FT CDS complement(271130..271819) FT /transl_table=11 FT /locus_tag="BB3520" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="InterPro:IPR010916" FT /db_xref="UniProtKB/TrEMBL:Q7WGR9" FT /protein_id="CAE34014.1" FT /translation="MLNVLRRVFVPRPIRIEAWPVHVGDDLILSVRDWPASQDMVGFLN FT ATQQQFPGVRIHLLAGFDSVQVSGEQRRAYGKATAKECQPKLAIQQYCDEAISRGAKPG FT PQGNVVLLTWASAGRVVVVSVPPQVKGDAVEKFQASFPGVDQEGVGASDSTFGGDALWP FT ANDGDVFHFAARQWLALKRPDLLAPDRYKQRVRCLAKKLRKAANAYLDRRHHPGTSDPV FT PAQQEVA" FT misc_feature 271556..271624 FT /note="1 probable transmembrane helix predicted for BB3520 FT by TMHMM2.0 at aa 127-149" FT CDS complement(271812..272024) FT /transl_table=11 FT /gene="cro" FT /locus_tag="BB3521" FT /product="phage regulatory protein" FT /note="Similar to Bacteriophage P22 regulatory protein Cro FT SWALL:RCRO_BPP22 (SWALL:P09964) (61 aa) fasta scores: E(): FT 3, 34.04% id in 47 aa, and to Bacteriophage 21 Cro protein FT SWALL:Q9XJP6 (EMBL:AJ237660) (61 aa) fasta scores: E(): FT 2.5, 32.14% id in 56 aa" FT /db_xref="GOA:Q7WGR8" FT /db_xref="UniProtKB/TrEMBL:Q7WGR8" FT /protein_id="CAE34015.1" FT /translation="MDMRHPDSDIIDALGGTAAVARLCKVKDPSVSDWRKTGIPAARRM FT YLETIRPEAFCTPTPAQAQQEVTHA" FT CDS 272150..272494 FT /transl_table=11 FT /locus_tag="BB3522" FT /product="putative phage repressor" FT /note="Similar to Bacteriophage 434 repressor protein CI FT SWALL:RPC1_BP434 (SWALL:P16117) (94 aa) fasta scores: E(): FT 4.6, 32.53% id in 83 aa, and to Streptococcus thermophilus FT hypothetical transcriptional regulator arp2 SWALL:Q935U1 FT (EMBL:AJ278471) (111 aa) fasta scores: E(): 0.053, 41.93% FT id in 62 aa" FT /db_xref="GOA:Q7WGR7" FT /db_xref="InterPro:IPR001387" FT /db_xref="UniProtKB/TrEMBL:Q7WGR7" FT /protein_id="CAE34016.1" FT /translation="MDDAGIKQVQVARAAGIKPPSVADWLNGKTKNIRGANLVSVAQLL FT NVSEAWLADGVLPKERRLDSDWPFPKIPKQRYYTLSEAQRAGIEEWVARQVEAYASDAE FT SKSSPNERAA" FT misc_feature 272150..272305 FT /note="HMMPfam hit to PF01381, DE Helix-turn-helix, score FT 0.0001" FT misc_feature 272216..272239 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 272634..272960 FT /transl_table=11 FT /locus_tag="BB3523" FT /product="phage-related hypothetical protein" FT /note="Similar to the N-terminal region of Neisseria FT meningitidis transcriptional regulator nmb0910 SWALL:Q9JZT1 FT (EMBL:AE002442) (238 aa) fasta scores: E(): 0.0086, 34.92% FT id in 63 aa" FT /db_xref="UniProtKB/TrEMBL:Q7WGR6" FT /protein_id="CAE34017.1" FT /translation="MHETTARLFVASEEMSPGEAVTSRVAARMNIADNRVTNWKTRGIS FT FEGAVQAEAAYGIPAAWVMYRRMPSLPSQWPFEKWVPLEAIKRLPPDSAGFIAHRPSDH FT TSTR" FT CDS 273052..273495 FT /transl_table=11 FT /locus_tag="BB3524" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7WGR5" FT /protein_id="CAE34018.1" FT /translation="MRKDVLFDQSGSSDAVGETAHVFCATMQLRTPLRVLLRHGEECPP FT GVEPPVIADEAWQGIWVPTLEGMGLWGQMASQIGYIPAEGGLFLQFLIAMREAIEQSSV FT SDSKVARLTRALADPRWREFIQQLGGATAVSQHLLGLQEDDPV" FT CDS 273608..273793 FT /transl_table=11 FT /locus_tag="BB3525" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7WGR4" FT /protein_id="CAE34019.1" FT /translation="MLPHSQRPPSCLGVRSDPMPGLMRNTLYRNRHRLQGYGLKFWCNE FT RQEVERVLAVCTSQDP" FT CDS 274073..274492 FT /transl_table=11 FT /locus_tag="BB3526" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7WGR3" FT /protein_id="CAE34020.1" FT /translation="MFAVIETNNASHIAIHIPKEGADKSLPALAAMLEHNATFINKGWR FT EINVVKPSMHIILGDKFDTESDDAGELLIQACADVVSDDFVIATPEVFVSNKTAIAKKQ FT EEIDRLRSELQSVRFQLDAANARITELQAPDCEEA" FT CDS 274524..274901 FT /transl_table=11 FT /locus_tag="BB3527" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="InterPro:IPR010916" FT /db_xref="UniProtKB/TrEMBL:Q7WGR2" FT /protein_id="CAE34021.1" FT /translation="MLPLTYPTECGTSTVVRPLTDAERLAELRRDLDADLHYALVAQRY FT VRWPYGEPELAAEALYAATIGDAQSEAAFSLVVRAAARGESAVSVGTLFIEWTKLARAR FT LLDTLVELTEDGQRVTFGSRQ" FT misc_feature 274524..274766 FT /note="PS00430 TonB-dependent receptor proteins signature FT 1." FT CDS 274898..275002 FT /transl_table=11 FT /locus_tag="BB3528" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7WGR1" FT /protein_id="CAE34022.1" FT /translation="MNAYLILWSLALVALLAGDEFFYRRFRRGMGSEE" FT misc_feature 274898..274948 FT /note="Signal peptide predicted for BB3528 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.838) with cleavage site FT probability 0.695 between residues 17 and 18" FT CDS 274999..275307 FT /transl_table=11 FT /locus_tag="BB3529" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7WGR0" FT /protein_id="CAE34023.1" FT /translation="MMTKHTPGPWAIRYDYVVQARSFDDGRLVPVAQPYGVNGDGSDLF FT ANARLIAAAPNLLEALEAEEEWRGREAAGEIDPEWDYETMVAAKRRAAISKAKGEQQ" FT CDS 275304..275756 FT /transl_table=11 FT /locus_tag="BB3530" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7WGQ9" FT /protein_id="CAE34024.1" FT /translation="MTTCRQCKSTFQPSERQIRKSDFLCSECQRAYDAAYRAARKASGN FT PVKTGQMPRSYHQAYEAAYAQRPGVRERRASLMRGYARLHAGRHAARRKLRHEVEMGRI FT VPLPCEVCGDTPTDGHHASYALPLAVTWLCKQHHQELHAKAKGEQS" FT CDS 275753..275962 FT /transl_table=11 FT /locus_tag="BB3531" FT /product="phage-re |