EBI Dbfetch

ID   BX640446; SV 1; linear; genomic DNA; STD; PRO; 348642 BP.
XX
AC   BX640446;
XX
DT   09-AUG-2003 (Rel. 76, Created)
DT   29-JUL-2008 (Rel. 96, Last updated, Version 5)
XX
DE   Bordetella bronchiseptica strain RB50, complete genome; segment 10/16
XX
KW   complete genome.
XX
OS   Bordetella bronchiseptica
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Alcaligenaceae; Bordetella.
XX
RN   [2]
RP   1-348642
RA   Sebaihia M.;
RT   ;
RL   Submitted (06-AUG-2003) to the EMBL/GenBank/DDBJ databases.
RL   Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute,
RL   Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail:
RL   ms5@sanger.ac.uk
XX
RN   [3]
RA   Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E.,
RA   Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L.,
RA   Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A.,
RA   Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I.,
RA   Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T.,
RA   Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S.,
RA   Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E.,
RA   Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M.,
RA   Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S.,
RA   Barrell B.G., Maskell D.J.;
RT   "Comparative analysis of the genome sequences of Bordetella pertussis,
RT   Bordetella parapertussis and Bordetella bronchiseptica";
RL   Nat. Genet. 35(1):0-0(2003).
XX
DR   EMBL-CON; BX470250.
DR   RFAM; RF00005; tRNA.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..348642
FT                   /organism="Bordetella bronchiseptica"
FT                   /strain="RB50"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:518"
FT   CDS             123..1793
FT                   /transl_table=11
FT                   /locus_tag="BB2947"
FT                   /product="putative inner membrane component of
FT                   binding-protein-dependent transport system"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1604"
FT                   /db_xref="GOA:Q7WIA4"
FT                   /db_xref="InterPro:IPR000515"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WIA4"
FT                   /protein_id="CAE33439.1"
FT                   /translation="MHTTFLPRSARTRFSERGAGWLAGASLIALAVLAPVAALAWWALH
FT                   ADLSHWTHLTRYVLPQAMANTMILLAGVGVLVTMLGTGAAWLVTAYEFPTRRTLTWALL
FT                   LPLAVPTYIIAFAYLDLLHPIGPVQGAIRAVLGYDSPRQFRLPDLRSIYGAIFVLGFVL
FT                   YPYVYLSTRVMFMTQAASLLEAARTLGAGRVGVFLRVALPMARPAIAVGVSLALLETLN
FT                   DIGASEFLGVQTLTVSVYTTWITRSDLASAAQIALTMLVFVIALILLERHGRKRQRYAN
FT                   TQRMRAMQPRRLHGPAAALAAVLGWIPVVLGFVAPALYLIVETYKRLHLVGGVSDQLWA
FT                   GLRNTLMVATLATIVTLLCGLVVAWAGRSLRESASFNPGRTCGRIASLGYAVPGTVLAI
FT                   GLLAPFAWLDHTMSTLFGWNGLLLMGTTGALVCAYTIRFLAISTGGIEAGLARIPASLE
FT                   QASRLLGETSAGTLRRVHLPLLRPALAASALLVFVDTMKELPATLLLRPLNFETLATWL
FT                   YAEAARGTYEEGAVAALAIVAAGLIPVILLARTNLKMGH"
FT   misc_feature    123..242
FT                   /note="Signal peptide predicted for BB2947 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.996) with cleavage site
FT                   probability 0.651 between residues 40 and 41"
FT   misc_feature    join(183..251,318..386,420..488,573..632,708..776,870..929,
FT                   999..1067,1155..1223,1278..1346,1374..1442,1707..1766)
FT                   /note="11 probable transmembrane helices predicted for
FT                   BB2947 by TMHMM2.0 at aa 21-43, 66-88, 100-122, 151-170,
FT                   196-218, 250-269, 293-315, 345-367, 386-408, 418-440 and
FT                   529-548"
FT   misc_feature    642..854
FT                   /note="HMMPfam hit to PF00528, DE Binding-protein-dependent
FT                   transport systems inner membrane component, score 3.3e-11"
FT   misc_feature    645..731
FT                   /note="PS00402 Binding-protein-dependent transport systems
FT                   inner membrane comp. sign."
FT   misc_feature    1467..1688
FT                   /note="HMMPfam hit to PF00528, DE Binding-protein-dependent
FT                   transport systems inner membrane component, score 4e-05"
FT   CDS             1798..2574
FT                   /transl_table=11
FT                   /locus_tag="BB2948"
FT                   /product="probable ATP-binding component of ABC
FT                   transporter"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1603"
FT                   /db_xref="GOA:Q7WIA3"
FT                   /db_xref="HSSP:1G29"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WIA3"
FT                   /protein_id="CAE33440.1"
FT                   /translation="MADLLELDHIRLGYDTPQGLKTIIDDLSLSLPAGHIGCLLGESGC
FT                   GKTTVLRAIAGFEPVLAGHIALDGAVISSPDVQVAPELRRVGMMFQDYALFPHLSVSQN
FT                   VAFGLRRLSRPARAQRVAEMLELVGLAQSADSYPHEISGGQQQRVALARAMAPSPDLLL
FT                   LDEPFSNLDVDTRERLAFEVREILKRTGHTAILVTHNQAEAFAIADRIGVMARGHIEQW
FT                   DTPYNLHQHPASPFVRDFIRREALVEQRLQAFDRGR"
FT   misc_feature    1897..2448
FT                   /note="HMMPfam hit to PF00005, DE ABC transporter, score
FT                   3.9e-59"
FT   misc_feature    1918..1941
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    2218..2262
FT                   /note="PS00211 ABC transporters family signature."
FT   CDS             complement(2594..3499)
FT                   /transl_table=11
FT                   /locus_tag="BB2949"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1601"
FT                   /db_xref="HSSP:1J1L"
FT                   /db_xref="InterPro:IPR003829"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WIA2"
FT                   /protein_id="CAE33441.1"
FT                   /translation="MSILNNAPQSAVQTIVVPRTSDLGGFEVRRALPSAQQRSVGPFVF
FT                   LDEMGPVQFPAGVGMDVRPHPHIGLATVTYLYEGSLVHRDGAGNVQTILPGEVNWMTAG
FT                   RGIVHSERTAPESRLAPLRMYGLQMWVGLPKEHEETDPGFVHYGTQAQPVVEGEGVRAQ
FT                   VIAGSLFGQTSGVRTLSPLFYGDVQLQAGATVVVPPEHEERAAYLVEGTVDIEGQAYEP
FT                   GRLIVFAPGVAVTIRAQTAARMALVGGEPLDGPRFIWWNFVSSSKDRIEQAKEDWTRNR
FT                   FGQVVPGDETEFIPLPPPRS"
FT   misc_feature    complement(2747..3427)
FT                   /note="HMMPfam hit to PF02678, DE Uncharacterized BCR, YhhW
FT                   family COG1741, score 6.7e-06"
FT   CDS             complement(3577..4275)
FT                   /transl_table=11
FT                   /locus_tag="BB2950"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1600"
FT                   /db_xref="InterPro:IPR003829"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WIA1"
FT                   /protein_id="CAE33442.1"
FT                   /translation="MLTLRRSAERGHANHGWLDTHHTFSFANYYDPAHMGFGPLRVIND
FT                   DRIAAGRGFGTHGHRDMEIITYVLDGAIAHKDSMGSGSTIRPGDVQRMSAGRGVMHSEF
FT                   NPQPDAATHMLQIWIEPDVAGIAPEYEEKRFPEADKRGRLRQLVSPDGADGSLRIHQDA
FT                   RLYAGLFDGTESAELPLAAGRRSWVHVARGSLVVNGQRLGAGDGLALQDEAAVRLGDGE
FT                   GAEVLVFDLP"
FT   misc_feature    complement(3583..4275)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF02678, DE Uncharacterized BCR, YhhW
FT                   family COG1741, score 1.3e-111"
FT   CDS             4435..5379
FT                   /transl_table=11
FT                   /locus_tag="BB2951"
FT                   /product="LysR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1599"
FT                   /db_xref="GOA:Q7WIA0"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WIA0"
FT                   /protein_id="CAE33443.1"
FT                   /translation="MPRPRAAPPPGQPITPDLLVMVDAIARHGSFAKAARELGKVPSAV
FT                   TYAIRKLEDGLDVLLFDRSGHRAALTPAGQALLAEGRHVLQSLDALASRVKRVATGWEG
FT                   ELRIAVSAVLPWTPLYDLIEDFRALAGATTLRFSAEVLSGNWDALASGRADLLIGADAA
FT                   GAPSGAYRTQAMGQTQFAFCVAPHHPLAALGRPLSARDIAAYCAIVVADTSRDLPPRTR
FT                   GLLREQPVIVMPTMQAKIDAQVRGIGVGHLPLTLAAPYLAQGLLATCPTDDVVPLTEQV
FT                   VYAWRDPNPGRALQWWLERLRSPRLCESLLGVS"
FT   misc_feature    4480..4659
FT                   /note="HMMPfam hit to PF00126, DE Bacterial regulatory
FT                   helix-turn-helix protein, lysR family, score 9.7e-19"
FT   misc_feature    4729..5352
FT                   /note="HMMPfam hit to PF03466, DE LysR substrate binding
FT                   domain, score 1.6e-21"
FT   CDS             complement(5389..6879)
FT                   /transl_table=11
FT                   /gene="glnG"
FT                   /gene_synonym="ntrC"
FT                   /gene_synonym="glnT"
FT                   /locus_tag="BB2952"
FT                   /product="nitrogen regulation protein NR(I)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1598"
FT                   /db_xref="GOA:Q7WI99"
FT                   /db_xref="HSSP:1KRW"
FT                   /db_xref="InterPro:IPR020441"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI99"
FT                   /protein_id="CAE33444.1"
FT                   /translation="MMKPVWIVDDDQAIRWVLEKALARAGIATRSFSRAADVLQALAAD
FT                   VPSVLVSDIRMPGGDGLELLRQIKERNPGLPVIVMTAFADLDSTVSAFQGGAFDYLAKP
FT                   FDVNEAVALIQRAMQEGEPAADAGAAGEPAQNGERWVMTQSSSTAMQEVFRAIGRLAQS
FT                   KVTVLITGESGTGKELVARALHGHGARAGGPFVALNAAAIPRDLLEAELFGHERGAFTG
FT                   ANTLRRGRFEEAHGGTLFLDEIGDMPIELQTRLLRVLAEGSFYRVGGAQPVRVDVRIVA
FT                   ATHQPLEQRVEQGLFREDLFHRLNVIRLRLPPLRERVEDIPALAQHFLATSARALGVPV
FT                   KRLTPDALAVLARFDFPGNVRQLENFCHWLTVMAPGQTIDRNDLPPEIRAVEHQQAAAR
FT                   QAEPAAAAAAAGTAPAPAEAPDAAPRNWHAALLRDAQFRLERGEPAVMATLTRQFEKIL
FT                   LQSALDASRGRRVEAASRLGIGRNTITRKLRELGIDDE"
FT   misc_feature    complement(5407..5529)
FT                   /note="HMMPfam hit to PF02954, DE Bacterial regulatory
FT                   protein, Fis family, score 3.8e-12"
FT   misc_feature    complement(5785..5814)
FT                   /note="PS00688 Sigma-54 interaction domain C-terminal part
FT                   signature."
FT   misc_feature    complement(5788..6447)
FT                   /note="HMMPfam hit to PF00158, DE Sigma-54 interaction
FT                   domain, score 2.4e-133"
FT   misc_feature    complement(6148..6195)
FT                   /note="PS00676 Sigma-54 interaction domain ATP-binding
FT                   region B signature."
FT   misc_feature    complement(6340..6381)
FT                   /note="PS00675 Sigma-54 interaction domain ATP-binding
FT                   region A signature."
FT   misc_feature    complement(6514..6873)
FT                   /note="HMMPfam hit to PF00072, DE Response regulator
FT                   receiver domain, score 2.4e-34"
FT   CDS             complement(6876..7943)
FT                   /transl_table=11
FT                   /gene="glnL"
FT                   /gene_synonym="ntrB"
FT                   /gene_synonym="glnR"
FT                   /locus_tag="BB2953"
FT                   /product="nitrogen regulation protein NR(II)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1597"
FT                   /db_xref="GOA:Q7WI98"
FT                   /db_xref="InterPro:IPR013656"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI98"
FT                   /protein_id="CAE33445.1"
FT                   /translation="MTNVDAFDLLATSVFLLNERGHIEYANAAAEDLFGRSRKQLRGLS
FT                   AATLFDNPEDLQSAIDSAAAGKFADVRQLASLRRVVESVEVTVTTVSLSGQAWPVLIET
FT                   REIEQRVLADRNQRLVDEIESHRELLRNLAHEVKNPLGGLRGAAQLLEAELPSAALAEY
FT                   TQVIITEADRLQALVDRLSGPQRVPLAARPVNIHEICERVCALIQAEFRDAVELVRDYD
FT                   ASVPELRGDAARLMQAVLNVARNAAQELVQQKPGADVPAPRVVLRTRVARQVMLAHRQH
FT                   RLALVVSVLDNGPGVPEHIRERIFHPLVTARAGGTGLGLSLAQDFVQQHGGIIEFESRA
FT                   RHTEFRLVLPMEPPL"
FT   misc_feature    complement(6888..7256)
FT                   /note="HMMPfam hit to PF02518, DE Histidine kinase-, DNA
FT                   gyrase B-, and HSP90-like ATPase, score 1.4e-26"
FT   misc_feature    complement(7374..7571)
FT                   /note="HMMPfam hit to PF00512, DE His Kinase A
FT                   (phosphoacceptor) domain, score 1.2e-13"
FT   CDS             complement(8007..9419)
FT                   /transl_table=11
FT                   /gene="glnA"
FT                   /locus_tag="BB2954"
FT                   /product="glutamine synthetase"
FT                   /EC_number="6.3.1.2"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1596"
FT                   /db_xref="GOA:Q7WI97"
FT                   /db_xref="HSSP:1F52"
FT                   /db_xref="InterPro:IPR008147"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI97"
FT                   /protein_id="CAE33446.1"
FT                   /translation="MASPKDVLKQIADNEVKFVDFRFTDTLGREHHVSVPTSAVDEDKL
FT                   ESGQAFDGSSIPGWKGIEASDMLLIPDLDTANLDPFREEPTLILSCDVVEPSDLKGYDR
FT                   DPRSLAKRAEAYLKSSGLGDTAYFGPEPEFFVFDGVTWNTDMSGTFVKIKSEEAPWSSG
FT                   LEFEGGNMGHRPGPKGGYFPVPPVDSFQDMRSEMCLLLEQMGVPVEVHHHEVAAPGQLE
FT                   IGTKFSTLVQRADWNQVMKYVIHNVAHVYGKTATFMPKPIVGDNGSGMHVHQSIWKDGQ
FT                   NLFAGNGYAGLSEFALYYIGGIIKHARALNAITNPGTNSYKRLVPHFEAPVKLAYSARN
FT                   RSASIRIPYVGNPKARRIETRFPDPLANPYLAFSALMMAGLDGVQNKIHPGDPADKNLY
FT                   DLPPEEDAKIPTVCASLEEALAALDKDREFLTRGGVFSNDMLDAYIELKMGEVTRLRMT
FT                   THPVEFDMYYSL"
FT   misc_feature    complement(8223..8261)
FT                   /note="PS00182 Glutamine synthetase class-I adenylation
FT                   site."
FT   misc_feature    complement(8268..9113)
FT                   /note="HMMPfam hit to PF00120, DE Glutamine synthetase,
FT                   catalytic domain, score 3.6e-166"
FT   misc_feature    complement(8595..8642)
FT                   /note="PS00181 Glutamine synthetase putative ATP-binding
FT                   region signature."
FT   misc_feature    complement(9129..9377)
FT                   /note="HMMPfam hit to PF03951, DE Glutamine synthetase,
FT                   beta-Grasp domain, score 1.3e-39"
FT   misc_feature    complement(9213..9269)
FT                   /note="PS00180 Glutamine synthetase signature 1."
FT   CDS             complement(9605..10825)
FT                   /transl_table=11
FT                   /locus_tag="BB2955"
FT                   /product="putative porphyrin oxidoreductase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1595"
FT                   /db_xref="GOA:Q7WI96"
FT                   /db_xref="InterPro:IPR007197"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI96"
FT                   /protein_id="CAE33447.1"
FT                   /translation="MAITIPIRNLGGPAAGARVLAPAGATLTSLPPLSVYVHVPWCVRK
FT                   CPYCDFNSHAAPGEIPERAYLDALRADLEQAVPEVWGRQVISVFIGGGTPSLLSAAGLD
FT                   ELLAMLRACLNLLPDAEITMEANPGTAEAGRFRDYAASGVTRLSLGIQSFDDAQLSRLG
FT                   RIHDAAQARAAIAMAQQAVERVNLDLMFALPGQELEQCRADLRQALAFGTEHLSLYHLT
FT                   LEPNTVFAKYPPELPDDDASAAMQDMVEETLAQAGLARYEVSAYARRGARCRHNLNYWE
FT                   FGDYLGLGPGAHGKLSFHDRIERQARLRNPDSWMQRAMARDGSHVAESRVVGAGELPFE
FT                   FMLNALRLKEGVAASSFGERTGLSLAAIAHQLEAATRRGLLDADPTRLRATALGWRFLN
FT                   DLQEMFL"
FT   misc_feature    complement(9914..10582)
FT                   /note="HMMPfam hit to PF02473, , score 3.9e-11"
FT   CDS             complement(10847..11497)
FT                   /transl_table=11
FT                   /locus_tag="BB2956"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1593"
FT                   /db_xref="GOA:Q7WI95"
FT                   /db_xref="HSSP:1K7K"
FT                   /db_xref="InterPro:IPR002637"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WI95"
FT                   /protein_id="CAE33448.1"
FT                   /translation="MLPMSAEILNPNLRRVVLASNNAGKLREFSALFAPLGIELVPQSE
FT                   LGVSEAEEPHATFVENALAKARHASRHTGLPALADDSGLCVVALGGAPGVHSARYAQQP
FT                   GGARSDAANNALLVRELAAAGDRRAWYVALLALVRTENDPCPLIGEGLWHGEIVDAPAG
FT                   EHGFGYDPHFYLPQQGCTAAQLAPEHKNRISHRAQALAQLLDKLRATGPVDRP"
FT   misc_feature    complement(10877..11452)
FT                   /note="HMMPfam hit to PF01725, DE Ham1 family, score
FT                   6.9e-66"
FT   CDS             11615..13417
FT                   /transl_table=11
FT                   /locus_tag="BB2957"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1592"
FT                   /db_xref="InterPro:IPR001633"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI94"
FT                   /protein_id="CAE33449.1"
FT                   /translation="MISSSAADLHADAGLAAILQGGLLNPCYQPVADLAQDRIFGHESL
FT                   IRGPHQSVLHMPDALFAAARRDGLHAELELASLQAGARRFIELDSPGNLFLNLSGAVLV
FT                   ACWRHYGSGLPVMLLADSGLAADRVVIEITEYDPVGGDLPALNQALACLRASGMRVALD
FT                   DYGVGNASLQLWAELAPDLVKIDRYFFNGISRDERRLQLVRSMVSTARQLNSTLVAEGI
FT                   ENADDLRTVYELGIRYAQGWFLGRPENEPRTDLPTAARASLQPACATQPTRIPGHTALA
FT                   LRVEAPPVMLARHTNDDVQRLFQEHRHLHAVAVLDTDSRPVGIINRRDFSEHYAQRYTR
FT                   DLFGRNPCSTFMNPDPVLVDVHTSIDQLSHVLLSDDQRYLADGFVITRGGRYDSLGTGE
FT                   ALVRSVTEMRLEAARYANPLTSLPGNIPISQHIAHLLDHALDFVVCYADLDNFKPFNDV
FT                   YGYWRGDDMIRLCADSIKRHCDARRDFVGHVGGDDFVVMLRSTDWRLRIERIIAEFNLR
FT                   ALDLYDDQGRHDGGIRAEDRYGVLRFFPCVTLGIGALEVSPVELGSHVRPEDLASAAAR
FT                   VKQQVKHGNLALLVQRYQLPARAA"
FT   misc_feature    11636..12391
FT                   /note="HMMPfam hit to PF00563, DE EAL domain, score
FT                   1.8e-30"
FT   misc_feature    11900..11932
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    12848..13369
FT                   /note="HMMPfam hit to PF00990, DE GGDEF domain, score
FT                   0.00035"
FT   CDS             complement(13295..15034)
FT                   /transl_table=11
FT                   /locus_tag="BB2958"
FT                   /product="methyl-accepting chemotaxis protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1591"
FT                   /db_xref="GOA:Q7WI93"
FT                   /db_xref="InterPro:IPR003660"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI93"
FT                   /protein_id="CAE33450.1"
FT                   /translation="MAATPPCAAQPHLRIPMRKKLKLAAALSATLAFFVLLFAAAAGAG
FT                   VAVLRDNQAAIEALGRGNIERASDLGDTTSWLFQARAVLADAKTYMEGGLEEQRDAALA
FT                   QAATLLEQARASQERLRANPEMAAQGASLYDEVLAGYDALAVQALAPLHAALKGWNGIE
FT                   ANRLAERALPQAAERYIEAVDAFQGYAREQGRAAVADAARVLERMVLGAAALLALVAVL
FT                   AVVIRLGFRRAMLRPLTEAGRHFDRIADGDLTAAIAARGDNEIGVLYSAMRRMQGGLTR
FT                   AVESVRHGVEEIHTGSGEIAAGGVEMSGRTARQAGALQEAAASMAELAGTVRATAEHAD
FT                   QASRQAAGATELARQGGTAVAQVVASMRDIASGAQRIAEIVGLVDSLAFQTNVLALNAA
FT                   VEAARAGPQGRGFAVVAGEVRSLAQRSAQAAREIKGLIDDSSARVASGVQQVNLAGATM
FT                   GEIVQSIDRVTQLVAGISEASATQAAGIASVNLAVADAERATQENAAMAEQTAAAAASL
FT                   EAQAQALRQAVAVFRLAGAAPRSGGAGGQLVALDQQRQVAVLDLLLDAGGGRGEVLRAN
FT                   VAA"
FT   misc_feature    complement(13433..14131)
FT                   /note="HMMPfam hit to PF00015, DE Methyl-accepting
FT                   chemotaxis protein (MCP) signaling domain, score 1.2e-68"
FT   misc_feature    complement(14192..14401)
FT                   /note="HMMPfam hit to PF00672, DE HAMP domain, score
FT                   6.2e-08"
FT   misc_feature    complement(join(14345..14413,14888..14956))
FT                   /note="2 probable transmembrane helices predicted for
FT                   BB2958 by TMHMM2.0 at aa 27-49 and 208-230"
FT   misc_feature    complement(14903..15034)
FT                   /note="Signal peptide predicted for BB2958 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.583 between residues 44 and 45"
FT   CDS             complement(15069..15974)
FT                   /transl_table=11
FT                   /locus_tag="BB2959"
FT                   /product="probable transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1590"
FT                   /db_xref="GOA:Q7WI92"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI92"
FT                   /protein_id="CAE33451.1"
FT                   /translation="MAAHFDLTDLQLLVHIGDWHSLTRGAEKSHLSLPAASTRVKNLEE
FT                   HFGTQLLYRTSQGVTLTPSGEAMLRHARTVMQQVEQMRGDMQEFARGVKGHVRVLANTT
FT                   AMTEFMPAVLARYLAAHPDVNVELRERLSYLVVRAVADGSADIGVVAGCAPDQKLQFIP
FT                   YRKDRLVVVTPAGHRLAAEESVAFADTLADDYVGLSEWSAIHPFLVQAAASLGRTFKFR
FT                   VEVGNFEAVCRMIESGVGIGVIPESAALRYARNLDIALVGLTDEWAVRELQICVKNLDS
FT                   LPVFARELVETLVADGDAAG"
FT   misc_feature    complement(15081..15707)
FT                   /note="HMMPfam hit to PF03466, DE LysR substrate binding
FT                   domain, score 1.3e-38"
FT   misc_feature    complement(15777..15956)
FT                   /note="HMMPfam hit to PF00126, DE Bacterial regulatory
FT                   helix-turn-helix protein, lysR family, score 2.7e-15"
FT   misc_feature    complement(15822..15914)
FT                   /note="PS00044 Bacterial regulatory proteins, lysR family
FT                   signature."
FT   CDS             16157..17533
FT                   /transl_table=11
FT                   /locus_tag="BB2960"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1589"
FT                   /db_xref="GOA:Q7WI91"
FT                   /db_xref="InterPro:IPR005656"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI91"
FT                   /protein_id="CAE33452.1"
FT                   /translation="MTMIPSPSDHPSARLAEFTAGLRYEDIPPAVLRRAEDLFLDSLAS
FT                   ILAGAGAPPVQAIARYAAAMGPADGPSQNLVTRTGTTPLFAAMVNAAACHVVEQDDVHN
FT                   GAVFHPAAVVFPPALAVAQALGRSGRDLLTAAVAGYEAGIRIGEFLGRSHYRIFHTTAT
FT                   VGPLAAAVTVGHLLRLDAAQMLHALGSAGTQSAGLWEFLRDAADSKQLHTAHAAAAGIT
FT                   AAYLAQDGFTGAQRILEGAQGLAAGMSSDADPSRLLDGLGQRWALAETSFKYHASCRHT
FT                   HPAADALQHVMREHGLRAADLAAVETLVHQGAIDVLGPVTAPATVHQSKFSMGTVLALI
FT                   ALRGHAGLTEFDAAPGDAEVAALRDKVRMTLDDEVDRAYPRRWIGKVNVTTTDGRRLHG
FT                   RVDEPKGDPGNTLSRPEIEDKVARLARYGGHATESEVRALIDRVWRIAEQERVGKLLSE
FT                   "
FT   misc_feature    16181..17521
FT                   /note="HMMPfam hit to PF03972, DE MmgE/PrpD family, score
FT                   7.8e-133"
FT   misc_feature    16652..16684
FT                   /note="PS00178 Aminoacyl-transfer RNA synthetases class-I
FT                   signature."
FT   CDS             complement(17741..18481)
FT                   /transl_table=11
FT                   /gene="rph"
FT                   /locus_tag="BB2961"
FT                   /product="ribonuclease PH"
FT                   /EC_number="2.7.7.56"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1588"
FT                   /db_xref="GOA:Q7WI90"
FT                   /db_xref="HSSP:1R6L"
FT                   /db_xref="InterPro:IPR002381"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WI90"
FT                   /protein_id="CAE33453.1"
FT                   /translation="MSTSAADTLSRPSGRAVDALRPFSLERGFTRYAEGSVLVRAGNTH
FT                   VLCTASVLEKVPPFLKGRGEGWVTAEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIG
FT                   RSLRAVFDLRLLGERTLHLDCDVLQADGGTRCASITGAWVAAADAVALLMQRGDLAHNP
FT                   IRDAVAAVSVGLVDGRAVLDLDYQEDSACAADVNVVMTGSGAFVEVQGTGEGATFTRGE
FT                   LDTMLGLAEGGIAQLVRAQREALQ"
FT   misc_feature    complement(17783..17986)
FT                   /note="HMMPfam hit to PF03725, DE 3' exoribonuclease
FT                   family, domain 2, score 1.5e-16"
FT   misc_feature    complement(18026..18427)
FT                   /note="HMMPfam hit to PF01138, DE 3' exoribonuclease
FT                   family, domain 1, score 1.6e-46"
FT   CDS             18618..19544
FT                   /transl_table=11
FT                   /locus_tag="BB2962"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1587"
FT                   /db_xref="InterPro:IPR013527"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI89"
FT                   /protein_id="CAE33454.1"
FT                   /translation="MIRSMTAFGNARADLEQGSLALELRSVNSRYLDLYFRLPDELRHV
FT                   ETPLRELLTAKLARGKVEVRVSYTRAASTELSTLDPQWLRSLAAQLDNARAVLPEVAAP
FT                   RLVELFNWPGQRGNDALDPQAWGAACMQAAQQALAQMQEGRAREGERLAAMMRECADGV
FT                   GRIVDGVETHLPQLLADHREKLALKLREAVESAFPGGFAHITGPELSERLTQEATLFAL
FT                   RIDVAEELSRLRSHLEELRHLLGDGPAKSDAKRGGSAGKRLDFLFQEMNREANTLGSKA
FT                   GSLEVTRAAMDLKLLIEQMREQAQNLE"
FT   misc_feature    18621..19082
FT                   /note="HMMPfam hit to PF03755, DE YicC-like family,
FT                   N-terminal region, score 5.4e-38"
FT   CDS             19815..19970
FT                   /transl_table=11
FT                   /locus_tag="BB2963"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1586"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI88"
FT                   /protein_id="CAE33455.1"
FT                   /translation="MHGIAELPTYIRLAGKLLGPQERQDLIGYLAAHPEAGDIMEGTGG
FT                   VRVIYY"
FT   CDS             19983..20111
FT                   /transl_table=11
FT                   /locus_tag="BB2964"
FT                   /product="hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1585"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI87"
FT                   /protein_id="CAE33456.1"
FT                   /translation="MPLYLLALFAKGDKANLAKAERNELAGLVDVLVNIWKGRAKS"
FT   CDS             20108..20392
FT                   /transl_table=11
FT                   /locus_tag="BB2965"
FT                   /product="putative DNA-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1584"
FT                   /db_xref="GOA:Q7WI86"
FT                   /db_xref="InterPro:IPR001387"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI86"
FT                   /protein_id="CAE33457.1"
FT                   /translation="MSTAFNNIRQGLSEAIAHAKGNVHGMRVHRPRQVDVKAVRAKVGM
FT                   TQEQFAAQFGFSPATLRHWERGDRTPRGAALVLLNVIDRNPQAVIEALA"
FT   misc_feature    20213..20374
FT                   /note="HMMPfam hit to PF01381, DE Helix-turn-helix, score
FT                   2.3e-06"
FT   CDS             complement(20451..21941)
FT                   /transl_table=11
FT                   /gene="amn"
FT                   /locus_tag="BB2966"
FT                   /product="putative nucleosidase"
FT                   /EC_number="3.2.2.4"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1583"
FT                   /db_xref="GOA:Q7WI85"
FT                   /db_xref="InterPro:IPR018017"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI85"
FT                   /protein_id="CAE33458.1"
FT                   /translation="MPSDYSIAQLHCPDPVPFEAFDSAVAATDRLIELYRRNTGFVREL
FT                   FHEVVGGRELSGRVRAYYPAIRIGVQTYDPIDSRLSYGHVAEPGEYQTTITQPHLFRDY
FT                   LIEQIGLLLQNHRVPVEVGESDMPIPLHFAFPDGTYVEGEHIENLRRPLRDLFDVPDLA
FT                   VTDDAIVNGSWRGQPGEPRPLAPFTATRVDYSLHRLQHYTATAPTHFQNFVLFTNYQFY
FT                   VDEFCVWARGLMASGGGDYDALIEPGNRITRRGDQAPVEAAAVRLPQMPAYHLVRPNHS
FT                   GITLVNIGVGPSNAKTITDHIAVLRPHAWLMLGHCAGLRDSQRLGDYVLAHGYVREDHV
FT                   LDADLPTWVPVPPLAEVQVALEQAVEEVAGLSGWELKRIMRTGTVATIDNRNWELRDQG
FT                   ELVQRFAQSRAIALDMESATIAANGFRFRVPYGTLLCVSDKPLHGELKLPGMASAFYRR
FT                   QVNQHLEIGIRALERLREMPPERLQSRKLRTFMETAFQ"
FT   misc_feature    complement(20529..21254)
FT                   /note="HMMPfam hit to PF01048, DE Phosphorylase family,
FT                   score 4.3e-38"
FT   CDS             22186..22785
FT                   /transl_table=11
FT                   /locus_tag="BB2967"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1582"
FT                   /db_xref="InterPro:IPR000064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI84"
FT                   /protein_id="CAE33459.1"
FT                   /translation="MTPPTRKARLLSLSLPAFLTAPLLALGLSLSPDTAQAALSPKARP
FT                   SLQGLRLAGEPTVPTLRDRVVQAGLDAIGTPYSWGGDDPADGFDCSGLVLFVYRHTAGL
FT                   ELPRTARAQRGAGRTVARKNLRPGDLVFFATRGRGVTSHVGIYIGQDQFVHAPTRGSKV
FT                   RVDSMDNRYWNKRFVGARRYLDTPAAGGTLLAASEN"
FT   misc_feature    22186..22260
FT                   /note="Signal peptide predicted for BB2967 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.346 between residues 25 and 26"
FT   misc_feature    22390..22734
FT                   /note="HMMPfam hit to PF00877, DE NLP/P60 family, score
FT                   2e-51"
FT   CDS             complement(22790..23560)
FT                   /transl_table=11
FT                   /locus_tag="BB2968"
FT                   /product="putative oxidoreductase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1581"
FT                   /db_xref="GOA:Q7WI83"
FT                   /db_xref="HSSP:1GEG"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI83"
FT                   /protein_id="CAE33460.1"
FT                   /translation="MQANANSGVKVALVTGAGTGIGRAVALEFLAQGYRVVLAGRRREP
FT                   LEQTRIAAGEDGVRALVVPTDVAREESVRELFDETQRAYGRLDVLFNNAGRGAPAVPIE
FT                   ELPVETWRDVVDTNLTGMFLCAQAAIRLMKAQQPQGGRIINNGSISAHAPRPFSIAYTA
FT                   TKHAVTGLTKSISLDCRPYGIACGQIDIGNAATEMTERMAAGILQADGSTRQEPRMDVA
FT                   HVAHAVAEMARLPLDTNVQFMTIMATNMPFVGRG"
FT   misc_feature    complement(22808..23539)
FT                   /note="HMMPfam hit to PF00106, DE short chain
FT                   dehydrogenase, score 2.2e-55"
FT   misc_feature    complement(23033..23119)
FT                   /note="PS00061 Short-chain dehydrogenases/reductases family
FT                   signature."
FT   CDS             23798..24511
FT                   /transl_table=11
FT                   /locus_tag="BB2969"
FT                   /product="probable cytochrome C"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1580"
FT                   /db_xref="GOA:Q7WI82"
FT                   /db_xref="HSSP:1CNO"
FT                   /db_xref="InterPro:IPR008168"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI82"
FT                   /protein_id="CAE33461.1"
FT                   /translation="MHPHRLVRCRWPVLSALAVAALCSPAAHAQAPAPADAARIASQGA
FT                   DGVAACVTCHGAKGEGNPAAGFPHLAGLGSGYLYEQLTALANGSRANPVMAPIAKGLSD
FT                   AQRQALAEYYAGLPAPFDADRLAATHLGEPAKADTGAWLAVRGAWDRNVPACNQCHGPG
FT                   GIGVGTAFPALAGQPAAYIAGQLRAWRQGQRPPGPLALMPAVATRLSDAEIDAVSAYYA
FT                   NLPRQAAAPRPEAAK"
FT   misc_feature    23798..23884
FT                   /note="Signal peptide predicted for BB2969 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.999 between residues 29 and 30"
FT   misc_feature    23900..24151
FT                   /note="HMMPfam hit to PF00034, DE Cytochrome c, score
FT                   1.4e-05"
FT   misc_feature    23948..23965
FT                   /note="PS00190 Cytochrome c family heme-binding site
FT                   signature."
FT   misc_feature    24251..24472
FT                   /note="HMMPfam hit to PF00034, DE Cytochrome c, score
FT                   0.0046"
FT   misc_feature    24263..24280
FT                   /note="PS00190 Cytochrome c family heme-binding site
FT                   signature."
FT   CDS             24508..25425
FT                   /transl_table=11
FT                   /locus_tag="BB2970"
FT                   /product="putative cytochrome C"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1579"
FT                   /db_xref="GOA:Q7WI81"
FT                   /db_xref="InterPro:IPR009056"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI81"
FT                   /protein_id="CAE33462.1"
FT                   /translation="MKYALIHRLALASLLAAALPAAPALAADAPPAFTPPAADAIPDNE
FT                   FGKVVREGEQIFLHTPQRAAKFVGNDLTCASCHLDAGRRADSAPMWAAYVLYPAYRAKN
FT                   GHVNTLAERLQGCFRYSMNGESPPADDPTLVALQSYMYWLASKAPTGVKLAGQGYRKLP
FT                   APPQKPDYLRGKTAYAQYCAVCHGAEGQGQKNGRHWVFPALWGEHSFNWGAGMHQIGNA
FT                   AGFIKANMPLGQAGLLSDQEAWDVAYFMNAHERPQDPRYQGSVAQTRAKYHDSDDSLYG
FT                   MEVNGHLLGSAAPPSGGKLRAAGK"
FT   misc_feature    24508..24585
FT                   /note="Signal peptide predicted for BB2970 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.998 between residues 26 and 27"
FT   misc_feature    24727..24744
FT                   /note="PS00190 Cytochrome c family heme-binding site
FT                   signature."
FT   misc_feature    25012..25269
FT                   /note="HMMPfam hit to PF00034, DE Cytochrome c, score 0.79"
FT   misc_feature    25051..25068
FT                   /note="PS00190 Cytochrome c family heme-binding site
FT                   signature."
FT   CDS             25546..26193
FT                   /transl_table=11
FT                   /gene="gmK"
FT                   /gene_synonym="spoR"
FT                   /locus_tag="BB2971"
FT                   /product="guanylate kinase"
FT                   /EC_number="2.7.4.8"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1578"
FT                   /db_xref="GOA:Q7WI80"
FT                   /db_xref="InterPro:IPR008145"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WI80"
FT                   /protein_id="CAE33463.1"
FT                   /translation="MSFLSMSAPSGNVFMVVAPSGAGKSSLVRALLDRDPSLVLSISCT
FT                   TRAPRPGEQDGREYRFVDQAEFARLRDAQQLLEWAEVHGNFYGTPRDRIDEATRAGHDV
FT                   LLEIDWQGARQVKQRYPEAIGIFVLPPSIDELESRLKARGQDAPQVIARRLLAAGGEIA
FT                   HAPECEYVIINQEFSVALTELVQIISAARLRFSSQAVRNAQLFSQLGIPAAH"
FT   misc_feature    25597..25620
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    25678..25731
FT                   /note="PS00856 Guanylate kinase signature."
FT   misc_feature    25681..25995
FT                   /note="HMMPfam hit to PF00625, DE Guanylate kinase, score
FT                   1e-30"
FT   CDS             26235..26438
FT                   /transl_table=11
FT                   /gene="rpoZ"
FT                   /locus_tag="BB2972"
FT                   /product="DNA-directed RNA polymerase omega chain"
FT                   /EC_number="2.7.7.6"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1577"
FT                   /db_xref="GOA:Q7WI79"
FT                   /db_xref="InterPro:IPR006110"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WI79"
FT                   /protein_id="CAE33464.1"
FT                   /translation="MARITVEDCLNQIPNRFKLTLAATYRARELAQGHAPRLDSKDKPT
FT                   VTALREIASGLTGLEMLRKVPT"
FT   misc_feature    26268..26423
FT                   /note="HMMPfam hit to PF01192, DE RNA polymerase Rpb6,
FT                   score 1.4e-07"
FT   CDS             26463..28742
FT                   /transl_table=11
FT                   /gene="spoT"
FT                   /locus_tag="BB2973"
FT                   /product="guanosine-3',5'-bis(diphosphate)
FT                   3'-pyrophosphohydrolase"
FT                   /EC_number="3.1.7.2"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1576"
FT                   /db_xref="GOA:Q7U385"
FT                   /db_xref="InterPro:IPR004095"
FT                   /db_xref="UniProtKB/TrEMBL:Q7U385"
FT                   /protein_id="CAE33465.1"
FT                   /translation="MAFPGLKYASSGLLAALRLGRRTGKKGRTPPSPSPGAQEAVDAAA
FT                   SPVASLAPLTEIISTYLDPKEVERVREAYRFADQAHLGQFRASGAPYISHPIAVTEICA
FT                   GWKLDANALSAALLHDVMEDQGVGKHELAEKFSPEVAELVDGLSKLDRLDFATKAEQQA
FT                   ESFRKMLLAMARDVRVILIKLADRLHNMRTLDAVNPEKRRRIARETLEIYAPIAHRLGL
FT                   NLLFRELQDLCFAAMYPNRYQVLYRAVLAARGNRREVISKIEDAVRAALPAAGIEAEVT
FT                   GREKTLYGVYRKMTEQKKSFSEVLDIYGFRVIVHTLPECYLALGTLHQLYRPVPGKFKD
FT                   YIAIPKVNGYQSLHTTLVGPYGTPVEFQFRTRDMHHIAEEGVASHWLYKDADLTLNELQ
FT                   KRTHQWLQSLLDIQSQTGDSGEFLEHVKVDLFPDAVYVFTPRGKIISLPRGATPVDFAY
FT                   AIHTDIGNQAVAAKVNGEFVPLRTELSSGDTVEIITSPASRPNAQWLNYVRTGRARSEI
FT                   RHYLRTVKYEESVAFGERLLEQAMIELHLPVPSTDDPQWDKLARSSGASSRDEILADIG
FT                   LGKRLAAVVARRFAPEHDLIATTAAAVDQITSARAAPILIQGSEGQAVQLAPCCGPLPG
FT                   DPIIAGMRLGHGLVVHTSDCPVALRARAREPERWINVAWDAQTAKHLPTRLDIVTRNER
FT                   GVLGRLAAEVTAADANIVHVTMHDDAVSTVSLHLTVQVDSRKHLAQVIRAIRHVPQVQK
FT                   IVRVKG"
FT   misc_feature    26736..27035
FT                   /note="HMMPfam hit to PF01966, DE HD domain, score 2.5e-10"
FT   misc_feature    27753..27944
FT                   /note="HMMPfam hit to PF02824, DE TGS domain, score
FT                   1.1e-30"
FT   misc_feature    28512..28733
FT                   /note="HMMPfam hit to PF01842, DE ACT domain, score
FT                   2.9e-06"
FT   CDS             complement(28755..29483)
FT                   /transl_table=11
FT                   /gene="glnQ"
FT                   /locus_tag="BB2974"
FT                   /product="glutamine transport ATP-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1575"
FT                   /db_xref="GOA:Q7WI78"
FT                   /db_xref="HSSP:1B0U"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI78"
FT                   /protein_id="CAE33466.1"
FT                   /translation="MSMVEFHNVTKKFGDSTVLDGITLDIDAGEVVVVVGPSGSGKSTF
FT                   LRCINVLETINDGDLLVGGQSVKGDAAQVREIRREAGMVFQQFNLFPQMTALENVMFGP
FT                   VHTRGAARAEARRQAEELLGKVGLAERMNHYPSELSGGQQQRVAIARALAIKPKLMLFD
FT                   EPTSALDPELRHEVLKVMRDLAEEGMTMIVVTHEMEFARKVGSRLIFIDCGKIAHDGPP
FT                   AELLSNPPSQRLKDFLQHVS"
FT   misc_feature    complement(28842..29399)
FT                   /note="HMMPfam hit to PF00005, DE ABC transporter, score
FT                   9.6e-66"
FT   misc_feature    complement(29025..29069)
FT                   /note="PS00211 ABC transporters family signature."
FT   misc_feature    complement(29355..29378)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             complement(29480..30139)
FT                   /transl_table=11
FT                   /gene="glnP"
FT                   /locus_tag="BB2975"
FT                   /product="glutamine transport system permease protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1574"
FT                   /db_xref="GOA:Q7WI77"
FT                   /db_xref="InterPro:IPR010065"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI77"
FT                   /protein_id="CAE33467.1"
FT                   /translation="MDFDWSVIGTALPNLLDGTLMTVKITFWGLVGGFVVGALIGVARA
FT                   YGPLWLAGLAQVYVAVIRGTPIVVQVMFIYFALPLMIEGMRVDAVAAAIATLIINSGAY
FT                   IAEIVRGSLLSVHKGLKEAGQAMGLPFYKILLYIIGPVAFRRMIPPLGNQCIISLKDSS
FT                   LFIVIGVAELTRQGQEIMASNFRAVEIWSAVAIVYLILTGTMALGLRMLEKRMRIL"
FT   misc_feature    complement(join(29504..29572,29708..29761,29798..29866,
FT                   29894..29962,29999..30067))
FT                   /note="5 probable transmembrane helices predicted for
FT                   BB2975 by TMHMM2.0 at aa 25-47, 60-82, 92-114, 127-144 and
FT                   190-212"
FT   misc_feature    complement(29594..29806)
FT                   /note="HMMPfam hit to PF00528, DE Binding-protein-dependent
FT                   transport systems inner membrane component, score 3e-10"
FT   CDS             complement(30208..30960)
FT                   /transl_table=11
FT                   /gene="glnH"
FT                   /locus_tag="BB2976"
FT                   /product="glutamine-binding periplasmic protein precursor"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1573"
FT                   /db_xref="GOA:Q7WI76"
FT                   /db_xref="HSSP:1GGG"
FT                   /db_xref="InterPro:IPR001638"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI76"
FT                   /protein_id="CAE33468.1"
FT                   /translation="MIKAKVAAVLIGASAALLGAVSTASAQDKELVVATDTAFVPFEFK
FT                   QGNTYTGFDIDLWAAIAKELNLKYKLQPMDFNGIIPGLQTKNIDAALAGITIRDDRKKV
FT                   IDFSDPYYESGLAILVSEKNDSIKEAKDLSGKSVAVKTGTATVDFMKSQVPDAKLKLFP
FT                   NIDNAYLELATGRVDAAVHDTPNVQYYANTAGKGRVKVVGTVKSGDFYGIAFPKGSELV
FT                   PQVNKALATLKANGQYDAIYTKWFGKQP"
FT   misc_feature    complement(30217..30870)
FT                   /note="HMMPfam hit to PF00497, DE Bacterial extracellular
FT                   solute-binding proteins, family 3, score 5.7e-78"
FT   misc_feature    complement(30550..30573)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    complement(30766..30807)
FT                   /note="PS01039 Bacterial extracellular solute-binding
FT                   proteins, family 3 signature."
FT   misc_feature    complement(30883..30960)
FT                   /note="Signal peptide predicted for BB2976 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.893 between residues 26 and 27"
FT   CDS             31148..32179
FT                   /transl_table=11
FT                   /locus_tag="BB2977"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1896"
FT                   /db_xref="GOA:Q7WI75"
FT                   /db_xref="InterPro:IPR005079"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI75"
FT                   /protein_id="CAE33469.1"
FT                   /translation="MAFKPVSITGTRRQAGQALGKLARPLMATYLEQSTVWAALRPWRG
FT                   HAYLEALAHEASQALPEIWDELEGLAEGLRMPLVDILLWNCRGDLLHKTSDGCTSIAWR
FT                   GDEDARWIAHNEDGDPFLYGRCHMVDVRTDDAPGYISFYYPGSLPGHTFGANRAGLVQT
FT                   INNVRIRQRHAGVPRMLLARAVLDCATLDDALAVLRDHPRAGGFHHTLGAAGEPRLYSV
FT                   EASPAACSIGEVARGNGHANHLVHPGSEAIGQIVTDSSRSRQRHIENLMDHWQPPVDGA
FT                   RLVATLLDREGELPILRCGADDPDEENTLATALFEMRDGGLTLQVHDRRDQPALRVTVC
FT                   PAA"
FT   CDS             complement(32193..35816)
FT                   /transl_table=11
FT                   /gene="oplaH"
FT                   /locus_tag="BB2978"
FT                   /product="5-oxoprolinase"
FT                   /EC_number="3.5.2.9"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1895"
FT                   /db_xref="GOA:Q7WI74"
FT                   /db_xref="InterPro:IPR008040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI74"
FT                   /protein_id="CAE33470.1"
FT                   /translation="MKWQFWVDRGGTFTDIVARRPDGATVTAKMLSENPEQYRDAAVAG
FT                   IRKLLGIAPGQPVPADQVECVKMGTTVATNALLERKGERTLLVTTRGFRDALRIAYQSR
FT                   PRLFDRNVQLPEMLYEAVVEADERLDADGTVVRALAEDGLRADLRRVFDDGIRAVAIVF
FT                   MHAWKEGVHERRAAAIAREIGFTQVSTSHEASPLIKFVSRGDTTVVDAYLSPILMRYVE
FT                   QVGSELPGVRLMFMQSSGGLTDAHRFRGKDAILSGPAGGIVGMVRTSELAGFDRVIGFD
FT                   MGGTSTDVSHYAGEFEREFETLVAGVRMRAPMMSIHTVAAGGGSILHFDGARLRVGPDS
FT                   AGANPGPACYRRGGPLAVTDCNVLLGKIQPDFFPSVFGPDADQPLDVAAVRARFAAMAE
FT                   EVRTATGREMSAEQLAEGFLEIAVGNMAEAIKRISVQRGHDVTEYALTTFGGAGGQHAC
FT                   LVADALGMTTVFAHPLGGVLSAYGMGLADQTEMRQKTVEQVLDAALMAQLEAGLDELAG
FT                   QASAELLRQHVPADKVAVQRRLHLKYRGTDTALEVAFGPLEQVRAAFEAGYRQRYSFLM
FT                   PGRELVVETISVEATGGGEAATEAPVTRTRAEPLAARRTIRMFSAGQWRETPLYVREDL
FT                   APGDMMAGPAIISEPNQTTVIEPGWQAEVTPRDHLVLRRVQARAQRRAIGTQADPVMLE
FT                   VFNNLFMSIAEQMGYRLQNTAYSVNIKERLDFSCAIFDAAGNLIANAPHMPVHLGSMGE
FT                   SIKTVMRANASRMRPGDAYVVNDPYHGGTHLPDVTVITPVFDRAGRDILFFVGSRGHHA
FT                   DIGGTTPGSMPPDSRTVEDEGVLFTNFQLVGNGEFRDREAREILASGRWPARNPDQNIA
FT                   DLHAQIAANEKGVQELLRMCDHFGLDVVRAYMGHVQDNAEEAVRRVISVLKDGRYTYRL
FT                   DNGAVIEVAVRVDRQARSAVVDFTGTSGQLENNFNAPGAIAVAAVLYVFRTLVDDEIPL
FT                   NAGCLKPLEIIIPEGSMLRPNPPASVVAGNVETSMCIVNALYGALGVLAASQGTMNNFT
FT                   FGNARYQYYETISGGTGAGPLRIDAAGPADAGFAGTSVVQAHMTNSRLTDPEVLELRFP
FT                   VRLESYEIRHGSGGAGRYRGGDGGVRRVRFLEPMTAAILSNNRRHAPFGLAGGGAGAMG
FT                   RNYVERADGRVEPLGPQDSAELAAGDVFVVETPGGGGYGPA"
FT   misc_feature    complement(32202..33755)
FT                   /note="HMMPfam hit to PF02538, DE Hydantoinase
FT                   B/oxoprolinase, score 1.8e-276"
FT   misc_feature    complement(32616..32636)
FT                   /note="PS00227 Tubulin subunits alpha, beta, and gamma
FT                   signature."
FT   misc_feature    complement(34158..35807)
FT                   /note="HMMPfam hit to PF01968, DE
FT                   Hydantoinase/oxoprolinase, score 3.5e-265"
FT   misc_feature    complement(34977..35006)
FT                   /note="PS00339 Aminoacyl-transfer RNA synthetases class-II
FT                   signature 2."
FT   CDS             complement(35895..36407)
FT                   /transl_table=11
FT                   /locus_tag="BB2979"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1894"
FT                   /db_xref="InterPro:IPR014601"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI73"
FT                   /protein_id="CAE33471.1"
FT                   /translation="MSSTPLIASSAHLASGRAPDLSEVEFGLMIASHAFNRWTVRCMAA
FT                   AGLPDLTANDVMVMHHVYHRQRPKKLADICFTLNVEDTHIVSYSLKKLERHDVVRGDRS
FT                   GKEVFYSVTPKGAEIIKRYAEVREQCLLDGLEAGAAGGLEFTRQLAHTLRSLSGLYDQA
FT                   ARAATSL"
FT   CDS             36551..37483
FT                   /transl_table=11
FT                   /locus_tag="BB2980"
FT                   /product="putative LysR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1893"
FT                   /db_xref="GOA:Q7WI72"
FT                   /db_xref="HSSP:1IXC"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI72"
FT                   /protein_id="CAE33472.1"
FT                   /translation="MNIRFLETFIWVAQLRSFKAAAGKLHLTQAAISGRIAALENDLGE
FT                   LLFERGSRDTRLTPAGRTLLDYAQRMLDTDHAMRQALRGSGTLRGRVRLGVVESIVHTW
FT                   FTPFIRRLSQTHPELEIELTAESTRRLQDLLKHGSIDVALQTDPIVGDDVRNRDMGMLK
FT                   MGWICSPAAGIPAQASVAELATHPLVTFPRHSQPHLQLLDVLDAAGVQAGRIHFVSSIA
FT                   ACTQFIEAGLGAATLPLAAVRPGLAAGRYRQVCCTPDLPHLRLVASWRPDRVAGLAEAV
FT                   VRLALDEMRLYAQHNDDALPPLDSGVLAL"
FT   misc_feature    36557..36736
FT                   /note="HMMPfam hit to PF00126, DE Bacterial regulatory
FT                   helix-turn-helix protein, lysR family, score 1.3e-18"
FT   misc_feature    36599..36691
FT                   /note="PS00044 Bacterial regulatory proteins, lysR family
FT                   signature."
FT   misc_feature    36803..37420
FT                   /note="HMMPfam hit to PF03466, DE LysR substrate binding
FT                   domain, score 2.1e-37"
FT   CDS             37648..38352
FT                   /transl_table=11
FT                   /locus_tag="BB2981"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1892"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI71"
FT                   /protein_id="CAE33473.1"
FT                   /translation="MTAHPGRAMEKHVAAPIRHDRDAMGELFIWTDIDPAHEEDFNQWY
FT                   DREHMAERAGIAGFRWARRYRSQHGRRRYLALYRTENLHVFGSAAYRQAFERQTPWSLA
FT                   NFARMRDTNRRVMVVSPLAGVGTGAALGLLRLGSVELAARAAALAVSAQEIEGVLALRV
FT                   LTPDPQLSTPLPSEDPAARVLDPVLIIDATTEPAAAAAARSLAEQLELPTDGIQTFHLL
FT                   WDLRADDLRAAP"
FT   misc_feature    37993..38061
FT                   /note="1 probable transmembrane helix predicted for BB2981
FT                   by TMHMM2.0 at aa 116-138"
FT   CDS             38373..39338
FT                   /transl_table=11
FT                   /locus_tag="BB2982"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1891"
FT                   /db_xref="GOA:Q7WI70"
FT                   /db_xref="InterPro:IPR018389"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI70"
FT                   /protein_id="CAE33474.1"
FT                   /translation="MKTTFAVLAAALAFSAGAQAATSWTMTAEQPDANYLTQNARQFAD
FT                   EVKAATAGALEIKVQSNSTLLKRPEVKRGVQQAVVQIGEVLVSALGNEDPLFEIDSVPF
FT                   LASSFHESEKLWKATRPLLTQRLDKQGIVLVYGSPWPPQGIYTKKPVAALADLKGTRFR
FT                   AYSASTSHMAALMGAVPTTVQTPEVPQAFSTGVIDAMLTSPATGVDSQAWDYVKYYYDA
FT                   QAFIPQSFVIANKRAFQRLPAEVRQAVLDAGAKAEIRGWQTARAKTRELTDTLARNGMS
FT                   VEPLPAQLAKELQAIGATMVSDWSKKAGADGQQLLDAYRK"
FT   misc_feature    38373..38432
FT                   /note="Signal peptide predicted for BB2982 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.991 between residues 20 and 21"
FT   misc_feature    38448..39296
FT                   /note="HMMPfam hit to PF03480, DE Bacterial extracellular
FT                   solute-binding protein, family 7, score 1.3e-15"
FT   CDS             39352..39843
FT                   /transl_table=11
FT                   /locus_tag="BB2983"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1890"
FT                   /db_xref="InterPro:IPR018062"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI69"
FT                   /protein_id="CAE33475.1"
FT                   /translation="MPILDRIAVASGAVAALFLALIGAIVAAQIASRLLGMQIPAADDF
FT                   AAWSMAASVFLALPYAMLRGDHIRVTLLLQFLPKTAHRPYELAATALGLALSAWAAWQA
FT                   GGFVHESFAYDEVAQGMLRVPLWIPQICMPIGLALLTLMLARRLAMVARGRQPEETAHG
FT                   "
FT   misc_feature    39352..39435
FT                   /note="Signal peptide predicted for BB2983 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.999) with cleavage site
FT                   probability 0.581 between residues 28 and 29"
FT   misc_feature    39367..39492
FT                   /note="PS00041 Bacterial regulatory proteins, araC family
FT                   signature."
FT   misc_feature    join(39370..39438,39481..39540,39601..39669,39727..39786)
FT                   /note="4 probable transmembrane helices predicted for
FT                   BB2983 by TMHMM2.0 at aa 7-29, 44-63, 84-106 and 126-145"
FT   CDS             39836..41134
FT                   /transl_table=11
FT                   /locus_tag="BB2984"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1888"
FT                   /db_xref="GOA:Q7WI68"
FT                   /db_xref="InterPro:IPR004681"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI68"
FT                   /protein_id="CAE33476.1"
FT                   /translation="MGELAQSLVLIASLLLLLAAGVWVSLALVASGLVALLLFTDAPAG
FT                   IIFATKSWDASANWALTALPLFIWMGEILYRTRLAEDMFSGLGPWVRRLPGRLVHVNVL
FT                   GCGIFAAVSGSSAATAATIGRISLPELKARGYDDGLAIGSLAGAGTLGLLIPPSIVMIV
FT                   YGVAAQVSLIKLFIAGILPGLLLMALFSGYIGVWSLRNPARVPPREPAVPWLTMLARLR
FT                   LLLPVVALIAGVIGSIYAGIATATEAATIGVIGALAIAAWGKSLNRRSFIDSLMGATRT
FT                   SCMISFILLGAAYLTSAMSFTGLPANLAEWISSLGLSQYGLIAVLTVFFILMGAFLDGI
FT                   SIVVLTTAVLMPAIQAADIDPIWFGIYLILVVEMAQITPPVGFNLFVIQGITGRNLFEL
FT                   VRMAFPFFLLLVLATAIITIFPAIVTALPLAMR"
FT   misc_feature    39836..39925
FT                   /note="Signal peptide predicted for BB2984 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.995) with cleavage site
FT                   probability 0.485 between residues 30 and 31"
FT   misc_feature    join(39854..39955,39998..40066,40127..40195,40253..40321,
FT                   40358..40426,40496..40564,40691..40759,40802..40870,
FT                   40931..40999,41042..41110)
FT                   /note="10 probable transmembrane helices predicted for
FT                   BB2984 by TMHMM2.0 at aa 7-40, 55-77, 98-120, 140-162,
FT                   175-197, 221-243, 286-308, 323-345, 366-388 and 403-425"
FT   misc_feature    40340..40468
FT                   /note="PS00041 Bacterial regulatory proteins, araC family
FT                   signature."
FT   misc_feature    40607..40630
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             41287..42372
FT                   /transl_table=11
FT                   /locus_tag="BB2985"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1887"
FT                   /db_xref="GOA:Q7WI67"
FT                   /db_xref="InterPro:IPR018389"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI67"
FT                   /protein_id="CAE33477.1"
FT                   /translation="MQRFKGAAAIARPWLPMPCGVLRGMPQFENSITKDVSMYKKLSLL
FT                   AGTIVLAFGAGAQAQTKWDLPTAYPASNLHVENLTQFVKDVDSLSGGKLKITLHNNASL
FT                   YKAPEIKRAVQGNQAQIGEILLTNFANEDPVYELDGLPFLATGYDASFKLYQAQKPFLE
FT                   KKLASQGMMLLYSVAWPPQGIFANRDIKQVSDMKGLKWRAYSPVTAKIAELVGAQPVTV
FT                   QQAELAQAMATGVIDSYMSSGSTGFDTKTYEYIKKFYDTEAWLPKNAVLVNKKAFDALD
FT                   PATQQALKKAGAQAEERGWKLSQEKNSWYKEQLAKNGMAIIAPTAELKSGLTEVGKRML
FT                   DDWLKKAGADGQAMIDAYRKQ"
FT   misc_feature    41479..42327
FT                   /note="HMMPfam hit to PF03480, DE Bacterial extracellular
FT                   solute-binding protein, family 7, score 2.8e-27"
FT   CDS             42379..42879
FT                   /transl_table=11
FT                   /locus_tag="BB2986"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1886"
FT                   /db_xref="InterPro:IPR007387"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI66"
FT                   /protein_id="CAE33478.1"
FT                   /translation="MRRFLDRLYGAAGLLAGLCTIGVLVSVLAAIIARQVGLNIPGTDA
FT                   YAGYFMAAAGFLALASTFKHGEHIRVTLLLNALSAPGHRRLDIFALCVGAILAAAFAWF
FT                   SVKLAHDSWLFNDISTANDATPLWIPQLTMAAGTILFFIALLDELVRRVRGQGFAKSQQ
FT                   IHE"
FT   misc_feature    42379..42465
FT                   /note="Signal peptide predicted for BB2986 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.995) with cleavage site
FT                   probability 0.954 between residues 29 and 30"
FT   misc_feature    join(42403..42471,42514..42567,42634..42690,42748..42816)
FT                   /note="4 probable transmembrane helices predicted for
FT                   BB2986 by TMHMM2.0 at aa 9-31, 46-63, 86-104 and 124-146"
FT   CDS             42872..44173
FT                   /transl_table=11
FT                   /locus_tag="BB2987"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1885"
FT                   /db_xref="GOA:Q7WI65"
FT                   /db_xref="InterPro:IPR004681"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI65"
FT                   /protein_id="CAE33479.1"
FT                   /translation="MNEILIVTLLVVSIFALLGCGVWVGLTLAGTAWIGMEVLSSRPAG
FT                   DAMAVTIWGASSSWTLTALPLFLWMGEILFRTRLSEDLFKGLAPWLNRLPGRLLHTNVI
FT                   GCAIFAAVSGSSAATCATVGKMTIPELTRRGYPEDKILGTLSGAGTLGLLIPPSIIMIV
FT                   YGVAADVSIAKLFIAGIFPGLLLALLFMGYIAWWAIRHPGAVPAADPGISLMQKLKQSR
FT                   HLIPVLLLIGAVLGSIYTGIATATEAAAVGVVGALILSALQGSLTRASFMTSLLGATRL
FT                   YCMIALILAGAQFLTLAMGYIGLPRALAEWIGGLGLSQFGLIMALMVFFVVLGCFLDGI
FT                   SIVVLTMGVLLPTVQAAGIDLIWFGIFIVFVVEMAQITPPVGFNLFVLAGMSGRELPYI
FT                   ARASLPMFFLMIVAVLLLYYLPGIATWLPQHMTL"
FT   misc_feature    42872..42958
FT                   /note="Signal peptide predicted for BB2987 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.983) with cleavage site
FT                   probability 0.938 between residues 29 and 30"
FT   misc_feature    join(42884..42952,43010..43078,43175..43243,43301..43369,
FT                   43394..43462,43541..43600,43619..43687,43715..43783,
FT                   43802..43870,43880..43933,43952..44020,44063..44131)
FT                   /note="12 probable transmembrane helices predicted for
FT                   BB2987 by TMHMM2.0 at aa 5-27, 47-69, 102-124, 144-166,
FT                   175-197, 224-243, 250-272, 282-304, 311-333, 337-354,
FT                   361-383 and 398-420"
FT   misc_feature    42899..42931
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(44199..45950)
FT                   /transl_table=11
FT                   /gene="fhaC"
FT                   /locus_tag="BB2988"
FT                   /product="hemolysin activator-like protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1884"
FT                   /db_xref="InterPro:IPR013686"
FT                   /db_xref="UniProtKB/TrEMBL:Q9RGR4"
FT                   /protein_id="CAE33480.1"
FT                   /translation="MTDATNRFRPGLVVRALVRAGLLFAVAACAQAQLLPGARDLNRID
FT                   DRQRKEQLQRDIERALTRPPVELNPQSEAASPARKPDATSGHTVTVHAVDLDFGVEGRL
FT                   FDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVPPGVVDGVLKLKVEW
FT                   GRIKGWLIDGKPLERTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNGGKTGNITIVP
FT                   ADEYGYSYLDLQLQRRALPRVSLGMDNSGPGTPENGRYKYNASVTANDLLGLNDTLGLY
FT                   IGNRYYRDAGHDAERNYDLMYSVPLGRTRLDLQTGYSTYRNLLKTRYGQYQSAGNSRSF
FT                   GLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTRLDVSSKHYSDVTVGMQYSTQRGAN
FT                   AYFGDLSFTRGVGINNGKYAAYDERGPQGNVSRLNGSLAWTRYMALADQPLQWTSQLGF
FT                   QYSRQQLLNSYQITVGDEYTVRGYNLRTSQSGDSGAYLSNTLTVPVQFSLFGKQASMAP
FT                   FAGVDVGALKSNHPDARTIRMAGLAAGVRFDLPYARLSFTYSKPVGAQPGGAPRAPVWY
FT                   INAGLSF"
FT   misc_feature    complement(44205..45914)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF03865, DE Hemolysin activator HlyB,
FT                   score 6.4e-06"
FT   misc_feature    complement(45399..45428)
FT                   /note="PS00215 Mitochondrial energy transfer proteins
FT                   signature."
FT   misc_feature    complement(45855..45950)
FT                   /note="Signal peptide predicted for BB2988 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.963) with cleavage site
FT                   probability 0.596 between residues 32 and 33"
FT   CDS             complement(45943..47040)
FT                   /transl_table=11
FT                   /gene="fimD"
FT                   /gene_synonym="fhaE"
FT                   /locus_tag="BB2989"
FT                   /product="fimbrial adhesin"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1883"
FT                   /db_xref="GOA:Q7WI64"
FT                   /db_xref="InterPro:IPR014779"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI64"
FT                   /protein_id="CAE33481.1"
FT                   /translation="MPARVISFCGAALAVWAGLAVQPAMAVDPPVDCGRALGLHFWSST
FT                   SLISDQTPDGTLIGKPVVGRSLLSKSCEVPDDIKDELSDKHDGEPVDIVLELGSSYKIR
FT                   PQSYGHPGIVVDLPSGSTEETGIAIYIDFGSSPMQKVGERQWLYPQKGEVLFDALAING
FT                   DNAEVRYQAIKVGPLKRPRKLVLSQFPNLFTYKWVFMRGTSQERVLATGTISTDVATST
FT                   IDLKTCRYTSQTVSLPTIQRSALTGVGTTLGTTDFQMPFWCYGRPRVSVYMSAANTQTG
FT                   VDGVALPATGQAAGMASGVGVQLINGKTQQPVKLGLQGKIALPEAQQTESATFSLPMKA
FT                   QYYQTSTSTSAGKLSVTYAVTLNYD"
FT   misc_feature    complement(45949..46380)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF00419, DE Fimbrial protein, score
FT                   0.0004"
FT   misc_feature    complement(46960..47028)
FT                   /note="1 probable transmembrane helix predicted for BB2989
FT                   by TMHMM2.0 at aa 5-27"
FT   misc_feature    complement(46963..47040)
FT                   /note="Signal peptide predicted for BB2989 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.999 between residues 26 and 27"
FT   CDS             complement(47054..49675)
FT                   /transl_table=11
FT                   /gene="fimC"
FT                   /gene_synonym="fhaA"
FT                   /locus_tag="BB2990"
FT                   /product="outer membrane usher protein precursor"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1882"
FT                   /db_xref="GOA:Q7WI63"
FT                   /db_xref="InterPro:IPR018030"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI63"
FT                   /protein_id="CAE33482.1"
FT                   /translation="MKQIPLILAMSLAFAAAAKGESAPDMQAAVNFDSAMLWGGANGAD
FT                   LSRFNYSNALRPGNYIVDIYANNYPLIRQQVRFVAAQTSGQGLKTAPAVACFTYGQLEA
FT                   MQVRLRALDPALVADLKSSGRCEVLGKLFPDSRESFDFGENRLEVSIPQAYTINRFRRD
FT                   ISPDEWDSGITAFRLGYQYNYADYIGGLRAGRRLDLNLYSGFNFKGWYLRNSSTLGWGQ
FT                   GRFTRRSQRTSLQTDIPSWRARLVFGDVFSSGEYFAPYSMRGMLVGSDTAMLPYSERLY
FT                   RPTIRGVARTRANVKVYQAGVLVFQDAVPPGPFAIDDYSPASYGGDLRVVVTEANGAVQ
FT                   TFTVPYASAVRLILPGQTQWSFSAGRYRNYRNDGQDRPWVTQVTGRHGVADGVNLYGGL
FT                   LIAQAYQAGLAGLSWNTPWGAMAADATLSRSQLSTTGNANGSSLRFSYSKTLSGTNTAI
FT                   RLATLRYSSSGFWNFADAVNAGPAETNGRNGRFGLYSLLGRERPRGDFSVTLSQPLGGY
FT                   GSLYVSALRRTYWGSSRVDQQTQLGYSTQVGRVGVNLDVSRTENRRSTEHQVMLNLSIP
FT                   LYGATSSGVVTGSLARTGSAPVQQSVNYSGMSGERDQYTYGLGVQRAGTSAQYALNGSW
FT                   SGTYGEVSGQLTHGRSYSQYQINGSGGLVAHAGGVTFGQYQAGTIGLIQAEAAAGAKVV
FT                   NTRNAAVDRSGYGLVSLTPYSLNEVELSPQDLPLDVQLESTVEQVIPRAGAVVALRFPT
FT                   RHDVAAMLVAEPGSEGALAFGTEVRDGAGKVVGVAGQGASALVRGVSASGTLEVTRANG
FT                   SICRATYDLKSAGHAVHGLPRIALACAPQGGGERGARAAVQAVAQPAPISISGKDHEPD
FT                   IR"
FT   misc_feature    complement(47210..49588)
FT                   /note="HMMPfam hit to PF00577, DE Fimbrial Usher protein,
FT                   score 0"
FT   misc_feature    complement(48719..48751)
FT                   /note="PS01151 Fimbrial biogenesis outer membrane usher
FT                   protein signature."
FT   misc_feature    complement(49622..49675)
FT                   /note="Signal peptide predicted for BB2990 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.459 between residues 18 and 19"
FT   CDS             complement(49738..50562)
FT                   /transl_table=11
FT                   /gene="fimB"
FT                   /gene_synonym="fhaD"
FT                   /locus_tag="BB2991"
FT                   /product="chaperone protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1881"
FT                   /db_xref="GOA:Q7WI62"
FT                   /db_xref="HSSP:1KIU"
FT                   /db_xref="InterPro:IPR018046"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI62"
FT                   /protein_id="CAE33483.1"
FT                   /translation="MNTYACDGALAQSRPQGWFTPAFTVKRQGSMARWRRRLGVAALGA
FT                   AMLASLAPAARASLVITGTRVIYNAGSPETTVKMSNEGQAPALMQAWIDDGNAEAKPDE
FT                   VQVPFFLTPPLARVDPGKGQTLRIFFNGYPDGKTLPSDRESVFWLNVLEVPPKATPEEG
FT                   HGVLQLTIRSRLKLFYRPKGLPGNPLTAAADLTFKRKANGVLEVHNPTPYYVNLQKLEV
FT                   GENGAHGSKTPWMLAPLSSDELRLKGTGAKSVQYWAIDDFGGVTPYQAAIAD"
FT   misc_feature    complement(49753..49998)
FT                   /note="HMMPfam hit to PF02753, DE Gram-negative pili
FT                   assembly chaperone, C-terminal domain, score 1.7e-31"
FT   misc_feature    complement(50008..50391)
FT                   /note="HMMPfam hit to PF00345, DE Gram-negative pili
FT                   assembly chaperone, N-terminal domain, score 2.1e-72"
FT   misc_feature    complement(50095..50148)
FT                   /note="PS00635 Gram-negative pili assembly chaperone
FT                   signature."
FT   misc_feature    complement(50383..50451)
FT                   /note="1 probable transmembrane helix predicted for BB2991
FT                   by TMHMM2.0 at aa 38-60"
FT   CDS             complement(50722..51327)
FT                   /transl_table=11
FT                   /gene="fimA"
FT                   /locus_tag="BB2992"
FT                   /product="fimbrial protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1880"
FT                   /db_xref="GOA:O54541"
FT                   /db_xref="InterPro:IPR014779"
FT                   /db_xref="UniProtKB/TrEMBL:O54541"
FT                   /protein_id="CAE33484.1"
FT                   /translation="MNLKFAGIALGLTACALTYQHQVFAADGTLVITGAITDTTCKING
FT                   AEPPTNIAVQLPTISRTALKDVGSTAGGTVFDVKLTECPQALNGQQVGLFFEPGGTVDY
FT                   TSGNLFAYRADSQGVEQVPQTKADNVQFQLANLDGSAIHLGRNKGAQAAQTFLVSQTAG
FT                   SSTYGTTLRYLARYIRSGAGSIVAGNLRSQVGFSVMYP"
FT   misc_feature    complement(50728..51234)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF00419, DE Fimbrial protein, score
FT                   2.4e-08"
FT   CDS             complement(51663..62621)
FT                   /transl_table=11
FT                   /gene="fhaB"
FT                   /locus_tag="BB2993"
FT                   /product="filamentous hemagglutinin/adhesin"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1879"
FT                   /db_xref="GOA:Q7WI61"
FT                   /db_xref="InterPro:IPR012334"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI61"
FT                   /protein_id="CAE33485.1"
FT                   /translation="MLACAGLPLVTHAQGLVPQGQTQVLQGGNKVPVVNIANPNSGGVS
FT                   HNKFQQFNVANPGVVFNNGLTDGVSRIGGALTKNPNLTRQASAILAEVTGTSPSRLAGT
FT                   LEVYGKGADLIIANPNGISVNGLSTLNASNLTLTTGRPSVNGGRIGLDVQQGTVTIERG
FT                   GVNVTGLGYFDVVARLVKLQGAVSSEQGKPLADIAVVAGANRYDHATRRATPIAAGARD
FT                   AAAGAYAIDGTAAGAMYGKHITLVSSDSGLGVRQLGSLSSPSAITVSSQGEIALGDATV
FT                   QRGPLSLKGAGAVSAGKLASGGAVRVAGGGAVKIASASSVGNLAVQGGGKVQATLLNAG
FT                   GTLQVSGRQAVQLGTASSRQVLSVNAGGALKADQLSATGRLEVDGKQAVTLGSAASRNA
FT                   LSVRAGGALKADKLSATGRLEVGGKQAVTLGSAASGDALSVSAGAALRADKLSATGRLD
FT                   VDGKQAVTLGSAASGDALSVSAGAALRADQLSATGRLDVDGKQAVTLGSAASGDALSVS
FT                   AGAALRADKLSATRRLGVDGKQAVTLGSVASDGALSVSAGGNLQAKQLVSNAGLDVRGQ
FT                   REVSLEAASSVRGMTVAAAGTLAARNLQSQGAIRVQGGEAVSVANANSDAELHVSGRGQ
FT                   VDLGDLSAARGADITGEQRVSIGRAHSDGDVNVAARGALSIDSMTALGAIGVQAGDSVS
FT                   AKDMRSRGAVTVSGGGSVNLGDVQSDGQVRATSAGAMTVRDAAAAADLALQAGGALQAG
FT                   FLKSAGAMTVNGRDAVRLDGAQAGGQLRVSSDGQAALGSLAAKGALTVSAARAATVAEL
FT                   KSLDSISVTGGERVSVQSVNSASRVAISAHGALEVGKVSAKSGIGIEGWGAVAVDSLGS
FT                   DGAISVSGRDAVRVDHARSLADISLGAEGGATLGAVEAAGSIDVRGGSTVAANSLRANR
FT                   DVRVSGKDAVRVTAATSGGGLHVSSGRQLDLGAVQARGALALDGGAGVALQSAKAGGTL
FT                   HVQGGEHLDLGTLAAVGAVDVNGAGDVRVAKLVSDAGADLQAGRSMTLGTVDTTGDLQA
FT                   RAQQALELGSVKTEGGLQAAAGGALSLAAAEVAGALELSGHGVTVDRASAGRARIDSTG
FT                   SVGIGALKAGAVEAASPRRARRALRQDFFTPGSVVVRAQGNVTVGRGDPHQGVLAQGDI
FT                   VMDAKGGTLLLRNDVLTENGTVTISADSAVLEHSTIESKISQSALAAKGDKGKPAVSVK
FT                   VAKKLFLNGTLRAVNDNEETMPGRQIDVVDGRPQITDAVTGEERKDESVVSDAALVADG
FT                   GPIVVETGELVSHAGGIGNGRNKGDGADVTVRTTGNVMNKGYISAGKQGVLEVGGTLTN
FT                   EFLVSSDGTQRIEAQRIENRGTFQSQAPAGTAGALVVKAAEAIVHDGVMATEGEMQIAG
FT                   KGGGSPAVTAGAKATTSANKLSADVASWDNAGSLDIKKGGAQVTVAGRYAEHGKVSIQG
FT                   DYTVSADAIALAAQITQRGGAADLTSRHDTRFSNNIRLMGPLQVSAGGAVSNTGNLKVR
FT                   EGVRVTAASFDNEAGAEVMAKSAALTTSGAVRNAGKMQVKEAATIVAASVSNPGTFTAG
FT                   KDLTVTSRGGFDNNGKMESNKDIVIKTEQFGNAGILDAKHDLTVTASGQADNRGSLKAG
FT                   HDFTVQAQRIDNSGTMAAGHDATLKAPHLRNTGQIVAGHDIHIINSAKLENTGRVDARN
FT                   DLVLDVEDFTNTGSLYAEHDATLTLAQGTQRDLVVDQDHILPVAEGTLRVKAKSLTTEI
FT                   ETGNSGSLIAEVQENIDNKQAIVVGKDLTLSSAHGNVANEANALLWAAGDLTVKAQNIT
FT                   NERAALIEAGGNARLTAAVALLNKLGRIRAGEDMHLDAPRIENTAKLSGEVQRKGVQYV
FT                   GGGTYGRWSGIGYVNYHLSSGSGAIAAPWYGSDLTAEQSLIEVGKDLYLNADARKDEHR
FT                   RLLNEGVIQAGGHGHIGGDVDNRSVMRTVSAMEYFKTPLPVSLTALDNRAGLSPASWNF
FT                   NSTYELLDYLLDQNRYEYIWGVYPTYTEWSVNTLKNLNLGYQAKPAPTAPPMPKMPTLD
FT                   LRGHTQESAEGRKIFAEYKKQQGEYEKAKAAVQAVEAYGEATRRVHDQLGQRYGKALGG
FT                   MDAETKEVDGIIQAFAADLRTVYAKQADQASIDAETDKVAQRYKSQIDAVQLEAIQPGR
FT                   VMLAKALSAALGADWRALGHAELMQRWKDFKAGKRGANIAFYPKEQTVLAAGAGLTLSN
FT                   GAVHNGENAAQNRGRPENLKIGAHSATSVGGSFDALRDVGLEKRLDIDDALAAVLVNPH
FT                   IFTRIGAVQASLSDAAAGPALARQARQAPGTDGMVDARGLGSADALASLASLDAAQGLE
FT                   VSGRRNAQVADARLAGPSAVAAPAVGAADVGVEPVAGDQVDQPVVAVGLEQPAAAVRVA
FT                   PPAVALPRPLFETRIKFIDQSKFYGSRYFFEQIGYQPDRAARVAGDNYFDTTLVREQVR
FT                   RALGGYESRLPVRGVALVAKLMDSAGTVGKALGLKVGVAPTAQQLKQADRDFVWYVDTV
FT                   IDGQKVLAPRLYLTEATRQGITDQYAGGGALIASGGDVNVDTNGHDVSSVNGLIQGKRV
FT                   KVDAGKGKVLVADNKGMGSGIEADDEVDVSAQDIDIEGGKLRGKDVKLKADTVKVATSM
FT                   RYDDKGRLAARGDGALDAQGGQLHIEAKRLETAGATLKGSKVKLDVDDVKLGGVYEAGS
FT                   SYENKSSTPLGSLFAILSSTTETNQSARANHYGTRIEAGTLEGKMQNLEIEGGSVEAAH
FT                   TDLSVARDARFKAAADFEHAEHEKDVRQLFVSAKAGAGGYEAGFSLGSEKGLEAHAGRG
FT                   KTAGAEVRVGYQASHEQSSETEKSYRNANLNFGGGSVEAGNVLDIGGADINRNRYGGAA
FT                   EGKAGAEEALRMRAKKVESTKYVSEQTSQSSGWSVEVGATGSARSSVLTAATRLGDSVA
FT                   QNVEDGREIRGELMAAQAAAEATQLVTADTAALAVSLGISADFDSSQSRSTSQNTQYLG
FT                   GNLSIEATEGDATLVGAKFSGGDQVSLKAAQSVNLMAAESTYESHSESHNFHASADANL
FT                   GANAVQGAVGLGLTAGMGTSHQITSETGKTYAGSSVAAANVSIDAGKDLNLSGSRVRGQ
FT                   RVVLGVEGDINTTSKQDERNYNSSGGGWDGSAGVAIQNRTLVAPVGSAGFNFNTEHDNS
FT                   RLTNDGAAGVVASDGLTGHVKGDANLTGATIADLSGEGNFKVDGAVNAQNLKDYRDKDG
FT                   GSGGLTVGISSTTLAPTVGVAFGRVAGEDYQAEQRATIDVGQTKDPSRLQVGGGIKGAL
FT                   NEDAAKATVVQRNKHWAGGGSEFSVAGKSPKKKNQVRPVETPTPTPDVVDGPPSRPATP
FT                   PASPQPIRATVEISSPPPTSVAKVEVVPRPKVETAQPLPPRPVPAKAVPVVPPKVEVAK
FT                   VEVVPRPKVETAQPLPPRPVVAEKVTTPAVQPQLAKVETVQPVKPETAKPLPKPLPVAK
FT                   VQEAPPPVVATTQPLPPVKAQQATPGPVAEAGKATVTTVQVQSAPAKPAPVVKQAQPAP
FT                   APAPAPAPAPKPKPKPKAERPKPGKTTPLSGRHVVQQQVQVLQRQASDINNTKSLPGGK
FT                   LPKPVTVKLTDENGKPQTYTINRREDLMKLNGKVLSTKTTLGLEQTFRLRVEDIGGKNY
FT                   RVFYETNK"
FT   misc_feature    complement(54162..54185)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             63168..63851
FT                   /transl_table=11
FT                   /gene="bvgA"
FT                   /locus_tag="BB2994"
FT                   /product="virulence factors transcription regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1878"
FT                   /db_xref="GOA:P0A4H3"
FT                   /db_xref="HSSP:1QMP"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/Swiss-Prot:P0A4H3"
FT                   /protein_id="CAE33486.1"
FT                   /translation="MRCRIFFSPRNLKHILLIMYNKVLIIDDHPVLRFAVRVLMEKEGF
FT                   EVIGETDNGIDGLKIAREKIPNLVVLDIGIPKLDGLEVIARLQSLGLPLRVLVLTGQPP
FT                   SLFARRCLNSGAAGFVCKHENLHEVINAAKAVMAGYTYFPSTTLSEMRMGDNAKSDSTL
FT                   ISVLSNRELTVLQLLAQGMSNKDIADSMFLSNKTVSTYKTRLLQKLNATSLVELIDLAK
FT                   RNNLA"
FT   misc_feature    63228..63590
FT                   /note="HMMPfam hit to PF00072, DE Response regulator
FT                   receiver domain, score 1e-28"
FT   misc_feature    63657..63845
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF00196, DE Bacterial regulatory
FT                   proteins, luxR family, score 4.9e-27"
FT   misc_feature    63708..63791
FT                   /note="PS00622 Bacterial regulatory proteins, luxR family
FT                   signature."
FT   CDS             63860..67576
FT                   /transl_table=11
FT                   /gene="bvgS"
FT                   /locus_tag="BB2995"
FT                   /product="virulence sensor protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1877"
FT                   /db_xref="GOA:P26762"
FT                   /db_xref="HSSP:1DCF"
FT                   /db_xref="InterPro:IPR001789"
FT                   /db_xref="UniProtKB/Swiss-Prot:P26762"
FT                   /protein_id="CAE33487.1"
FT                   /translation="MPAPHRLYPRSLICLAQALLAWALLAWAPAQASQELTLVGKAAVP
FT                   DVEIALDGDDWRWLARKRVLTLGVYAPDIPPFDVTYDERYEGLTADYMAIIAHNLGVQA
FT                   KVLRYPTREQAVGALESGQIDLIGTVNGIEGRLQSLRLSVPYAADHPVLVMPIGARRAP
FT                   PADLAGQRLAVDANYLPRETLQQAYPQATLHYFPSSEQALAAVAYGQADVFIGDALTTS
FT                   HLVSQSYFNDVRVVAPAQIVTGGESFGVRADNTRLLRVVNAVLEAIPASERRSLIYRWG
FT                   LGSSISLDFARPAYSAREQQWMANHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLL
FT                   QLRTGLDFQIIGVDTVEELIAKLRSGEADMAGALFVNAARESVLSFSRPYVRNGMVIVT
FT                   RQDPAAPADADHLDGRTIAMVRNSAAIPLLQQRYPQAKVVTADNPTEAMLLVADGQADA
FT                   VVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATARGQTELISILNKALYSISNDE
FT                   LASIVSRWRGSDGDPRTWYAYRNEIYLLIGLGLLSALLFLSWIVYLRRQIRQRKRAERA
FT                   LNDQLEFMRVLIDGTPNPIYVRDKEGRMLLCNDAYLDTFGVTADAVLGKTIPEANVVGD
FT                   PALAREMHEFLLTRMSAEREPRFEDRDVTLHGRTRHVYQWTVPYGDSLGELKGIIGGWI
FT                   DITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPADQE
FT                   PDRQSIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRVFDGLAR
FT                   QKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLTVTARPDGEAAH
FT                   VQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVM
FT                   RSAPGVGTTVSVDLRLTMVEKSAQATPPAAAAQATPSKPQVSLRVLVVDDHKPNLMLLR
FT                   QQLDYLGQRVVAADSGEAALALWHEHAFDVVITDCNMPGINGYELARRIRAAEAAPGYG
FT                   RTRCILFGFTASAQMDEAQRCRAAGMDDCLFKPIGVDALRQRLNEAAARAALPTPPSPQ
FT                   AAAPATHDATPAAFSAESILALTQNDEALIRQLLEELIRTNRADVDQLQKLHQQADWPK
FT                   VSDMAHRLAGGARVVDAKAMIDTALALEKKAQGQAGPSPEIDGMVRTLAAQSAALETQL
FT                   RAWLEQRPHQGQP"
FT   misc_feature    63860..63955
FT                   /note="Signal peptide predicted for BB2995 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.996) with cleavage site
FT                   probability 0.816 between residues 32 and 33"
FT   misc_feature    64052..64711
FT                   /note="HMMPfam hit to PF00497, DE Bacterial extracellular
FT                   solute-binding proteins, family 3, score 1.8e-18"
FT   misc_feature    64784..65446
FT                   /note="HMMPfam hit to PF00497, DE Bacterial extracellular
FT                   solute-binding proteins, family 3, score 1.1e-43"
FT   misc_feature    65480..65548
FT                   /note="1 probable transmembrane helix predicted for BB2995
FT                   by TMHMM2.0 at aa 541-563"
FT   misc_feature    65603..65797
FT                   /note="HMMPfam hit to PF00989, DE PAS domain, score
FT                   8.4e-12"
FT   misc_feature    65714..65737
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    66014..66214
FT                   /note="HMMPfam hit to PF00512, DE His Kinase A
FT                   (phosphoacceptor) domain, score 7.6e-23"
FT   misc_feature    66353..66700
FT                   /note="HMMPfam hit to PF02518, DE Histidine kinase-, DNA
FT                   gyrase B-, and HSP90-like ATPase, score 8e-40"
FT   misc_feature    66776..67156
FT                   /note="HMMPfam hit to PF00072, DE Response regulator
FT                   receiver domain, score 3.4e-40"
FT   CDS             complement(67623..68498)
FT                   /transl_table=11
FT                   /gene="bvgR"
FT                   /locus_tag="BB2996"
FT                   /product="regulatory protein BvgR"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1876"
FT                   /db_xref="InterPro:IPR001633"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI60"
FT                   /protein_id="CAE33488.1"
FT                   /translation="MIHWTNSARSSFEASLSPSRRTLRARLAPVEGPTVAELRAALKRD
FT                   EFIPAFQPVVDAGTGSLFGVATTIQWAHRHWGLVPEHCYMAALVRDNLHIALAQQLLAQ
FT                   VFDLAAAMRRGNRHVGLFIQPEPICLMSRSYSDDVLRNLDHRGLPPFALTLAVSPSLLQ
FT                   SPYGQQSLHSLRRLHRAGCNLVLTVSTFDAESPPHLDALEICGIALMPELMYALRQGGR
FT                   VGEACRAIAQQASAQRIPVMATGVVDEAMAQAADLLPCRYLLGDHVAPPMTGQRFLYWY
FT                   YRREMPPNYP"
FT   misc_feature    complement(67671..68411)
FT                   /note="HMMPfam hit to PF00563, DE EAL domain, score
FT                   3.8e-08"
FT   CDS             complement(68632..69465)
FT                   /transl_table=11
FT                   /locus_tag="BB2997"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1875"
FT                   /db_xref="InterPro:IPR016938"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WI59"
FT                   /protein_id="CAE33489.1"
FT                   /translation="MRRPVPYHRVAAIMTILSLAGAGHQARLDARGGMLTGPTANLAPG
FT                   HVQANLAILPQAVAGDFLRFCQRNPKPCPLLAVSEPGDPSLPELGLDIDIRTDVPRYRV
FT                   WRDGKLVDEPLDVRGLWRDDLVAFLIGCSFSFEEAMLENGLPVRHIEQGCNVPMYRTNI
FT                   ATHPAGPFSGPLVVSMRPLKAADAIRAIQVTSRFPSVHGAPVHLGDPALIGIADLGRPD
FT                   YGDAVEIRAGEIPVFWACGVTPQSVVAAVRPEFCITHAPGHMLVTDLLNSRLAAF"
FT   misc_feature    complement(69391..69465)
FT                   /note="Signal peptide predicted for BB2997 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.917) with cleavage site
FT                   probability 0.810 between residues 25 and 26"
FT   CDS             complement(69484..70833)
FT                   /transl_table=11
FT                   /locus_tag="BB2998"
FT                   /product="putative amidase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1874"
FT                   /db_xref="GOA:Q7WI58"
FT                   /db_xref="InterPro:IPR000120"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI58"
FT                   /protein_id="CAE33490.1"
FT                   /translation="MLPTLTQQSLALQEGRDTSSGLTQAALARAADPAGEGARVFTRVY
FT                   AEQARAEARAADALRAAGVTRSAIDGLPISIKDLFDVAGETTMAGSVARQDEPAAVRDA
FT                   VVVRRLRAAGAVIVGRTNMTEFAYSGLGLNPHYGTPRNPWDRATGRIPGGSSSGAAVSV
FT                   TDGMASGAIGSDTGGSVRIPAALCGLAGFKPSAQRVSMQGVLPLSANLDSIGPLAPSVR
FT                   CCATLDAILAGGDDADIPVPAALLGLRLAVPTTLALDGLDAHVSATFAATLAKLAEAGA
FT                   CIDEIAVPEFAQLADINSKGGFTAAEAWAWHRDLIERAADRYDPRVVARIRRGADMSAA
FT                   DYIDLLAARQAWRARVEARIAGYDALVLPTVPVVAPAIADLEASDALFGSTNLLILRNP
FT                   TLINFLDGSALSLPCHEAGTAPVGLMVAAANGSDRRVLAIGMAIEDLLGG"
FT   misc_feature    complement(69523..70773)
FT                   /note="HMMPfam hit to PF01425, DE Amidase, score 9.2e-89"
FT   CDS             complement(70894..71613)
FT                   /transl_table=11
FT                   /locus_tag="BB2999"
FT                   /product="hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1871"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI57"
FT                   /protein_id="CAE33491.1"
FT                   /translation="MAAARFTARYQMKIAFQVQADGATRTVETEIRNLVVAGWAGRDRA
FT                   AIEHHIEELAELGVPRPSSVPLYYRIAENQLSQAGRVQAVGPDSSGEAETFVFSVGGEL
FT                   YVSLASDHTDRKLEAHSVALSKQVCVKPVASDAWRHADVAEYWDELVLRSYIVENGAEV
FT                   LYQEGTLASLRTPQDLIAGYTQGQASLPEGTGMTCGTVAAIGGIRASTTFIMELHDPRR
FT                   QRTLRHRYDVEVLPEIA"
FT   CDS             complement(71636..72919)
FT                   /transl_table=11
FT                   /locus_tag="BB3000"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1870"
FT                   /db_xref="GOA:Q7WI56"
FT                   /db_xref="InterPro:IPR004681"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI56"
FT                   /protein_id="CAE33492.1"
FT                   /translation="MIATALILLLVLIGISIPVGAALGVLGLILDPLYSMLPLTRAIGE
FT                   VTWSANNEFLLVAIPLFIMLGEVLLRAGFAERMYAAMSLWLSWLPGGLMHANIGASTLF
FT                   SATSGSSVATAATVGTVAIPQIKKYGYNEPLFLGSLAAGGTLGILIPPSINLVIYGVLT
FT                   NSSVPKLYLAGIIPGFAMAALFMMTVVVACVAKPSWGGHRIQASWAQRIASLVHLGPPM
FT                   AIFFLVVGSIYAGLATPTEAAALGVLGALILAAWFRRLTWTMLREAIEGTMRSTAMIML
FT                   IVLAASFLNFVMSATGLTDALVQSITGLGLSPGWMLLIVVIFYLVLGCFMETLSMMITT
FT                   IPIVAPIMIALGYDPIWLGILIIVLVEAALITPPVGLNLFVVQSLRKSGSMTAVINGAL
FT                   PFVLAMFVMLALLAFFPDLALWLPRVFG"
FT   misc_feature    complement(join(71675..71743,71780..71848,71861..71920,
FT                   71939..72007,72035..72103,72140..72196,72209..72277,
FT                   72338..72406,72449..72517,72695..72763,72833..72901))
FT                   /note="11 probable transmembrane helices predicted for
FT                   BB3000 by TMHMM2.0 at aa 7-29, 53-75, 135-157, 172-194,
FT                   215-237, 242-260, 273-295, 305-327, 334-353, 358-380 and
FT                   393-415"
FT   misc_feature    complement(71933..71965)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    complement(72050..72517)
FT                   /note="HMMPfam hit to PF00597, DE DedA family, score
FT                   0.0087"
FT   misc_feature    complement(72857..72919)
FT                   /note="Signal peptide predicted for BB3000 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.998) with cleavage site
FT                   probability 0.869 between residues 21 and 22"
FT   CDS             complement(72916..73536)
FT                   /transl_table=11
FT                   /locus_tag="BB3001"
FT                   /product="hypothetical protein"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI55"
FT                   /protein_id="CAE33493.1"
FT                   /translation="MTRSEHFRALGGLLRRAESLSRLAVWVGGALTIASVLLISFDVLA
FT                   RKFFGFTTGGADELSSYAFAISTSWALAFATLQRANVRVDVVYQYLPVRVSAVLDWIAL
FT                   VALGVFMVFMTYYAYEVVQTSWAQKSAANTPLATPLWIPQGLWALGLAWMCVTVALMLV
FT                   RASAALVTGDLDLVKEICGVRSAQEEAEEEAAAGERMVKGASA"
FT   misc_feature    complement(join(73048..73116,73180..73248,73306..73359,
FT                   73402..73470))
FT                   /note="4 probable transmembrane helices predicted for
FT                   BB3001 by TMHMM2.0 at aa 23-45, 60-77, 97-119 and 141-163"
FT   CDS             complement(73646..74695)
FT                   /transl_table=11
FT                   /locus_tag="BB3002"
FT                   /product="putative transport protein"
FT                   /db_xref="GOA:Q7WI54"
FT                   /db_xref="InterPro:IPR018389"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI54"
FT                   /protein_id="CAE33494.1"
FT                   /translation="MKKPFVFAAAFAVAALTGAVHAQDLPKTKVKVVGGLSNLTAYNDY
FT                   EKPFWTKTVPELSKGQVTADIKGFNEMGLKGPEILRLMSQGVIEFGTATLAYFASDNPI
FT                   NEAIDLAGLAPDVKTARQVTDAFEPVYAKLYGEGANVKLLGISTYPAQVLFCNAEITGL
FT                   ADIKGKKVRTSSRTTAEFVEALGGSSVTMAFGEVVPALQNKVVDCAITGSLSGYSAKWY
FT                   EVSTHLYALPINWNQQIHAVNQKAWDKLDPKVRTFLQDNIKNLVDQIWDAAARQTQEGY
FT                   DCNTGAAACPYPVKGKMVLVQPTDADRALLKKVTEEAVLPKWAARCSAQCVSDFNATIG
FT                   KTLGLVAKK"
FT   misc_feature    complement(73715..74602)
FT                   /note="HMMPfam hit to PF03480, DE Bacterial extracellular
FT                   solute-binding protein, family 7, score 7.4e-14"
FT   misc_feature    complement(74630..74695)
FT                   /note="Signal peptide predicted for BB3002 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 1.000 between residues 22 and 23"
FT   CDS             complement(75038..75946)
FT                   /transl_table=11
FT                   /locus_tag="BB3003"
FT                   /product="putative LysR-family transcriptional regulator"
FT                   /db_xref="GOA:Q7WI53"
FT                   /db_xref="HSSP:1IXC"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI53"
FT                   /protein_id="CAE33495.1"
FT                   /translation="MIDLKHIETFFWVSTLGSFRAAAEKLNTTQPAISQRIASLEADLG
FT                   VRLFERDARGVSLTGKGQELLSHAERMLQMRHDLMQAAREQNVMSGTVRIGVAETIVQT
FT                   WLPALIEHVHAAYPALVLQIEVDTTHVLRGQLMARQIDVAFLMGPILEARMENIPLCAY
FT                   PLAWVASPLLELGPEPLTLERIGTLPVITYPSSSEPYRQVRDMLTRAGVAAPRMYGSAS
FT                   LAMVVRMTKDGIGTSVIAPVFLDEELARGELRLLNVQADPLPDLSFTASWVQGPDSHAA
FT                   RAIALLAQRTAAEHGGAIGAG"
FT   misc_feature    complement(75068..75691)
FT                   /note="HMMPfam hit to PF03466, DE LysR substrate binding
FT                   domain, score 2.8e-32"
FT   misc_feature    complement(75758..75937)
FT                   /note="HMMPfam hit to PF00126, DE Bacterial regulatory
FT                   helix-turn-helix protein, lysR family, score 2e-21"
FT   misc_feature    complement(75803..75895)
FT                   /note="PS00044 Bacterial regulatory proteins, lysR family
FT                   signature."
FT   CDS             76050..77012
FT                   /transl_table=11
FT                   /locus_tag="BB3004"
FT                   /product="conserved integral membrane protein"
FT                   /db_xref="GOA:Q7WI52"
FT                   /db_xref="InterPro:IPR000620"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI52"
FT                   /protein_id="CAE33496.1"
FT                   /translation="MHRRQSGLAARPPASTTPTPFTARPLIGVALLILSMWTLSGLDAS
FT                   GKWVMAAGVPLLVLCWVRYLVHLVLVLTLVLPARGLRILRATRPREQIVRGAAMFCATL
FT                   LFFTTLSYLPQAEATAINFLAPLIVLSIAPWVLKEPPRLSRWVAAGVAFLGVLIVIRPD
FT                   GGLHPLGVMFGLLTACCFAAQYIATRKVAGDDPYTSLIWSGAVGALCLTAALPFILPPA
FT                   MPVLRELSLGNWLLLLSTGVSGALGHLLQIGAYRNAAASTLAPFVYLQIVSATTIGWLF
FT                   WGHFPDAITWLGIAIICASGSVIGVLEWRRGRRLAPAAT"
FT   misc_feature    join(76110..76169,76197..76265,76326..76394,76404..76457,
FT                   76476..76529,76542..76610,76647..76715,76743..76811,
FT                   76830..76898,76911..76970)
FT                   /note="10 probable transmembrane helices predicted for
FT                   BB3004 by TMHMM2.0 at aa 21-40, 50-72, 93-115, 119-136,
FT                   143-160, 165-187, 200-222, 232-254, 261-283 and 288-307"
FT   misc_feature    76158..76532
FT                   /note="HMMPfam hit to PF00892, DE Integral membrane protein
FT                   DUF6, score 6.7e-06"
FT   misc_feature    76554..76586
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    76584..76967
FT                   /note="HMMPfam hit to PF00892, DE Integral membrane protein
FT                   DUF6, score 1.6e-08"
FT   CDS             complement(77016..77729)
FT                   /transl_table=11
FT                   /locus_tag="BB3005"
FT                   /product="probable ATP-binding ABC transporter protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1734"
FT                   /db_xref="GOA:Q7WI51"
FT                   /db_xref="HSSP:1F3O"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI51"
FT                   /protein_id="CAE33497.1"
FT                   /translation="MAARQGASKRKTMRMDNGNSIEVKGLGKRVADAGGELSILDGIDF
FT                   TVRAGSAVAITGSSGSGKSTLLGLLAGLDVPSSGSVHLAGQDLFALDEDGRARLRASHV
FT                   GFVFQSFQLLPNLTALENVMLPLELAGQPAREAAQAMLRRVGLGERLHHYPRTLSGGEQ
FT                   QRVSLARAFVVQPDLLFADEPTGSLDAATGETVIDLMFDLHREHGTTLVLVTHDPELAA
FT                   RCGRQLVLAAGRLQD"
FT   misc_feature    complement(77031..77582)
FT                   /note="HMMPfam hit to PF00005, DE ABC transporter, score
FT                   3.2e-60"
FT   misc_feature    complement(77214..77258)
FT                   /note="PS00211 ABC transporters family signature."
FT   misc_feature    complement(77538..77561)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             77806..78354
FT                   /transl_table=11
FT                   /gene="tesA"
FT                   /gene_synonym="apeA"
FT                   /gene_synonym="pldC"
FT                   /locus_tag="BB3006"
FT                   /product="acyl-CoA thioesterase I precursor"
FT                   /EC_number="3.1.2.-"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1733"
FT                   /db_xref="GOA:Q7WI50"
FT                   /db_xref="HSSP:1JRL"
FT                   /db_xref="InterPro:IPR001087"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI50"
FT                   /protein_id="CAE33498.1"
FT                   /translation="MVGDSLSAEYGLRRGSGWVPMLAQRVSQQYPNYRVVNASISGDTT
FT                   SGGLARLPALLRQHAPAVVVLELGSNDALRGLALDMTERNLRAMAQASRQAGASVLVVG
FT                   MQIPPNYGRDYTQRFAQVFPAVAEQEKARLVPFLMEGIATNRAMFQADGIHPNEDAQPA
FT                   LLDNVWPVLEPMLAQPAAD"
FT   misc_feature    77806..78042
FT                   /note="HMMPfam hit to PF00657, DE Lipase/Acylhydrolase with
FT                   GDSL-like motif, score 2.4e-07"
FT   CDS             complement(78336..80351)
FT                   /transl_table=11
FT                   /gene="ppiD"
FT                   /locus_tag="BB3007"
FT                   /product="peptidyl-prolyl cis-trans isomerase D"
FT                   /EC_number="5.2.1.8"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1732"
FT                   /db_xref="GOA:Q7WI49"
FT                   /db_xref="HSSP:1EQ3"
FT                   /db_xref="InterPro:IPR015391"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI49"
FT                   /protein_id="CAE33499.1"
FT                   /translation="MRFLAAWRGEGSRKRGNRGSMFEIIRTHRRWMQLILLLLIVPSFM
FT                   LVGVQGYDSFINREPELATVAGQPVTRSEFDQAHRNQLEQLRQRLGSQFDPAMIDTPAM
FT                   REQLLNQLIDQRLLAVVAADNGFSVSDGTLRNTIAAIPQVQDNGRFSPERYRQVLAAQG
FT                   MSPTSFEAGLRRDLAVARVLDPISQSASVPAEVARSVEAALTQRRTVQLRQFAASDFRA
FT                   KVTVSPQDIQAWYDANQEQLRVPEQVQAQYLVLDEAAATEGVQVKDEDIASYYEQNKSR
FT                   FGQPERRRVSHIMISIPPGASEEARKAAAAKAQEIAAQAAADPAGFAELARKNSQDTGS
FT                   AAQGGDLGWAPLPAPLQQAAQALAKDQVSGVVDTPTAFHILKVTDFQPGSVKPLAEVKD
FT                   EVVSEIRKQLASARFADMATDMTRLVYDQRDSLQPTADKLGLKLRTAGGITRTGLLPAE
FT                   QAGAGSAAGGDDAQLLDNPRVRQVLFSPDVLREKLNSGVIELTPDTMLAVRVAAVEPSH
FT                   IPPLEQVRASIEDRLLGERAAQAARQAGEAALKSVQADASATPEGFAPAIVVSRQDAQN
FT                   LPRRVLDAVMRQAPSPLPAYTGVELGADYVVARIEKVEAGQSTEQDLDLLKTQLSGAWG
FT                   QAEDAAVLRQLRDQYKVQILPEAAEAIKGDAQSAAG"
FT   misc_feature    complement(79197..79499)
FT                   /note="HMMPfam hit to PF00639, DE PPIC-type PPIASE domain,
FT                   score 1.7e-26"
FT   misc_feature    complement(79308..79373)
FT                   /note="PS01096 PpiC-type peptidyl-prolyl cis-trans
FT                   isomerase signature."
FT   misc_feature    complement(80184..80252)
FT                   /note="1 probable transmembrane helix predicted for BB3007
FT                   by TMHMM2.0 at aa 34-56"
FT   CDS             80534..81283
FT                   /transl_table=11
FT                   /gene="ugpQ"
FT                   /locus_tag="BB3008"
FT                   /product="glycerophosphoryl diester phosphodiesterase"
FT                   /EC_number="3.1.4.46"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1731"
FT                   /db_xref="GOA:Q7WI48"
FT                   /db_xref="InterPro:IPR004129"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI48"
FT                   /protein_id="CAE33500.1"
FT                   /translation="MTAPLPAWPYSPYIAHRGGGRLAPENTLAAMRVGAAHGFTMFEFD
FT                   VKLSRDNVEVLLHDDDVDRTSNGHGPAASKTYAELAQLDAGSWYAPQYAGEPVPTFSAV
FT                   ARYALANGIACNVEIKPCPGREAETGAAVARAAAALWQDAQPAPLLSSFAEPALHAARG
FT                   AAPQLPRALLVERVPADWLERLRKYDCIALNINQRDASRELVDAVHQAGYRIAAWTVND
FT                   PARARLLLDWGMDAIFTDELATIRPAV"
FT   misc_feature    80579..81271
FT                   /note="HMMPfam hit to PF03009, DE Glycerophosphoryl diester
FT                   phosphodiesterase family, score 1e-53"
FT   CDS             81296..82159
FT                   /transl_table=11
FT                   /locus_tag="BB3009"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1730"
FT                   /db_xref="InterPro:IPR007473"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI47"
FT                   /protein_id="CAE33501.1"
FT                   /translation="MFSYRHAFHAGNHADVLKHAILVHVLDYMNRKEAPYWVVDTHAGA
FT                   GLYALGSDWASKNAEHADGVARLWELSGLPALLADYVARIRDYNTDGVLRHYPGSPWLT
FT                   LDVLRERDRLRLFEMHPSESDVLVRNLERRNERTALRQTTVFAADGFEGVKALLPPPTR
FT                   RGLVLIDPSYEDKQDYRRTLTAVREGVKRFATGTFVVWYPLVQRREASEMARQLERLPV
FT                   KSWLHATLTVRKPAADGFGLHGSGMFLVNPPWTLHDALKPAMPLLARELAQDDRAGFTL
FT                   QYRENP"
FT   CDS             complement(82163..83578)
FT                   /transl_table=11
FT                   /locus_tag="BB3010"
FT                   /product="putative pyridine nucleotide-disulfide
FT                   oxidoreductase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1729"
FT                   /db_xref="GOA:Q7WI46"
FT                   /db_xref="InterPro:IPR000815"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI46"
FT                   /protein_id="CAE33502.1"
FT                   /translation="MKTLHTDVAIIGAGTAGLAAYRAARAAGKRALLIEGGQYGTTCAR
FT                   VGCMPSKLLIAAAEAAHAAAHGGPFGVHIDGAVRIDGAQVMARVKSERDRFVGFVLEGV
FT                   ENIPAEDKLRGMARFVEDTVLRVDGHTEVRAGSVVIASGSRPAVPPPFLALGDRLVVND
FT                   DVFAWDTLPARVAVFGPGVIGLELGQALARLGVQVRVFGVSGSLGGITDPRVRQSARKA
FT                   FQQEFYLDPDARVLETKRVGDEVEVRYVALDNTERTERFDYALVATGRRPNVDGLDLHN
FT                   TSLALDARGVPHFDRHTMQAGQAPVFIAGDANADAPLLHEAADEGRIAGENAARYPDVA
FT                   PGLRRAALGVVFSDPQIALVGTPFARLESGTFVAGEVDFGDQGRSRVMLRNRGMLRVYA
FT                   DIESGRFVGAEMVGPSAEHIGHLLAWAAQQSLTVAQMLEMPFYHPVVEEGLRTALRDAA
FT                   ARLAQARPQRLAA"
FT   misc_feature    complement(82217..82534)
FT                   /note="HMMPfam hit to PF02852, DE Pyridine
FT                   nucleotide-disulphide oxidoreductase, dimerisation domain,
FT                   score 6.3e-09"
FT   misc_feature    complement(82616..83560)
FT                   /note="HMMPfam hit to PF00070, DE Pyridine
FT                   nucleotide-disulphide oxidoreductase, score 8e-37"
FT   misc_feature    complement(83501..83578)
FT                   /note="Signal peptide predicted for BB3010 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.832) with cleavage site
FT                   probability 0.661 between residues 26 and 27"
FT   CDS             complement(83712..84440)
FT                   /transl_table=11
FT                   /locus_tag="BB3011"
FT                   /product="putative glutaredoxin"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1728"
FT                   /db_xref="GOA:Q7WI45"
FT                   /db_xref="HSSP:1FOV"
FT                   /db_xref="InterPro:IPR012335"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI45"
FT                   /protein_id="CAE33503.1"
FT                   /translation="MLQNREGQRVPSVTFPVRENNAWKQVTTDDVFKNKTVVVFSLPGA
FT                   FTPTCSSTHLPRYNELAPAFFAAGVDSIVCVSVNDTFVMNEWAKDQESANVTLLPDGNG
FT                   EFTDGMGMLVDKKDLGFGKRSWRYAMLVKDGVVEKMFIEPEKEGDPFEVSDADTMLAYV
FT                   APQARKPDQVVVFSKPGCPFCVDAKALLKGKGFDPIEIPLDNKVRGRVIGAVSGGDTAP
FT                   QVFINGKLIGGFDALKAYLA"
FT   misc_feature    complement(83757..83927)
FT                   /note="HMMPfam hit to PF00462, DE Glutaredoxin, score
FT                   1.7e-11"
FT   misc_feature    complement(83868..83918)
FT                   /note="PS00195 Glutaredoxin active site."
FT   misc_feature    complement(83958..84425)
FT                   /note="HMMPfam hit to PF00578, DE AhpC/TSA family, score
FT                   6.4e-38"
FT   CDS             complement(84579..84779)
FT                   /transl_table=11
FT                   /locus_tag="BB3012"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1727"
FT                   /db_xref="GOA:Q7WI44"
FT                   /db_xref="InterPro:IPR006121"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI44"
FT                   /protein_id="CAE33504.1"
FT                   /translation="MTIAFHVPDMTCGHCVKSITQAVQQAVPQALVQIDLAARRVTVEG
FT                   AAAAEPVAQAIRAAGYAVQAA"
FT   misc_feature    complement(84585..84773)
FT                   /note="HMMPfam hit to PF00403, DE Heavy-metal-associated
FT                   domain, score 5.9e-07"
FT   misc_feature    complement(84672..84761)
FT                   /note="PS01047 Heavy-metal-associated domain."
FT   CDS             84955..85353
FT                   /transl_table=11
FT                   /locus_tag="BB3013"
FT                   /product="MerR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1726"
FT                   /db_xref="GOA:Q7WI43"
FT                   /db_xref="HSSP:1Q06"
FT                   /db_xref="InterPro:IPR015358"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI43"
FT                   /protein_id="CAE33505.1"
FT                   /translation="MNIGDAAQASGISAKMIRYYESIGLIGPAARTESGYRVYGDAELH
FT                   TLRFVRRARDLGFSVEQMNELLALWRDRSRASADVKRIALEHVATLERKADELRQMADT
FT                   LKHLAHHCHGDTRPDCPIIEELSNTGQR"
FT   misc_feature    84964..85032
FT                   /note="PS00552 Bacterial regulatory proteins, merR family
FT                   signature."
FT   misc_feature    84964..85071
FT                   /note="HMMPfam hit to PF00376, DE Bacterial regulatory
FT                   proteins, merR family, score 9.4e-13"
FT   CDS             complement(85377..86777)
FT                   /transl_table=11
FT                   /locus_tag="BB3014"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1725"
FT                   /db_xref="GOA:Q7WI42"
FT                   /db_xref="InterPro:IPR001566"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WI42"
FT                   /protein_id="CAE33506.1"
FT                   /translation="MVDVLNIESLDLEARGIAHRDGKVLFVEGALPGERVTVQTVRRKP
FT                   SYEIAKVEEILRPSSQRVAPRCPHFGVCGGCAMQHLAPAAQVAIKQRALEDTFWHVGKL
FT                   KPARILPPLYGPTWGYRYRARLSVRVVPKKGGVLVGFHERKSSYVADMRECHVLPPAVS
FT                   RLLLPLRAMIAAMSAPDRMPQIEVALGDEAIVLVLRHLLPLTDGDIAVLRAFAAEHGVQ
FT                   WWLQSKGPDTVHPLEREHADALAYTLPEFGLRMPYRPTDFTQVNHAINRAMVSRALKLL
FT                   DVQPQDRVADLFCGLGNFTLPLATQGREAVGVEGSKALTDRAHEAAARHGLGERTRFAT
FT                   LNLFEVDVQWLRGLGYFDRMLIDPPREGAQAVAQALSLLAPGERPRRIVYVSCNPGTLA
FT                   RDAAIMVHEGGYALRSAGVINMFPHTGHVESIAVFESLDEATVLQAQAQARQKAREEAE
FT                   RLAEAAAA"
FT   misc_feature    complement(86616..86774)
FT                   /note="HMMPfam hit to PF01938, DE TRAM domain, score 0.21"
FT   CDS             complement(86896..87645)
FT                   /transl_table=11
FT                   /locus_tag="BB3015"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1724"
FT                   /db_xref="InterPro:IPR010239"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI41"
FT                   /protein_id="CAE33507.1"
FT                   /translation="MKKPLFALPLVLAVCAAGARAEPTDLGAGFSLSGNAAMVSDYRFR
FT                   GYSQTDFRPAIQLGFDLTHTSGLYLGNWNSNVSDFVFTDGNLEMDFYGGWKGEAGGGVG
FT                   LDVGVLHYYYPGSSSPKGGNYNNTDLYLGVSYANYSLKYSYTPGDFFSTPDTKGTWYLD
FT                   GTATFDLGDGWGLVGHLGYQKLKKAQDMDGDALGHYVDYKLGVTKDLSGWVLGLAAVGA
FT                   TRDNWLPTKNGHPSGRLGAVFSVARTF"
FT   misc_feature    complement(87583..87645)
FT                   /note="Signal peptide predicted for BB3015 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.975 between residues 21 and 22"
FT   CDS             complement(87934..88611)
FT                   /transl_table=11
FT                   /locus_tag="BB3016"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1723"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI40"
FT                   /protein_id="CAE33508.1"
FT                   /translation="MGRVRNPAETAPPAQWQRVSTFQEITMSRHAIRSTLAGLTLALSA
FT                   GVVAAPALAATQEGPAAGHMKEQGRHHHKKMMRDGVWLPGVGPLSKAQIESLKLDAKQQ
FT                   GLVDQARQAQRDVHKSRRDAGATGRDALKAQLDSGKLDPRALLAESDKRHEQFRAQATQ
FT                   VRDKWLAVWDSLNEVQRGQVTEIAKANQARMSERHARMQERMQKRHAEGGQSAAPAGAA
FT                   TAN"
FT   misc_feature    complement(88450..88611)
FT                   /note="Signal peptide predicted for BB3016 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.992) with cleavage site
FT                   probability 0.973 between residues 54 and 55"
FT   CDS             complement(88638..89417)
FT                   /transl_table=11
FT                   /locus_tag="BB3017"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1722"
FT                   /db_xref="GOA:Q7WI39"
FT                   /db_xref="InterPro:IPR019288"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI39"
FT                   /protein_id="CAE33509.1"
FT                   /translation="MTPTLVFDLETIPDVAGLRRLNDWGGEVSDLEVVERAFAARREAV
FT                   GHDFLPLHLHQVAVVGCVFRDDQGFRVKTLGQPDDPEAALLSGFFKTIERYTPRLVSWN
FT                   GSGFDLPVLHYRSLIHGVPAPRYWDTGDEDRDFKFNNYISRYHNRHIDLMDLLAKYNGR
FT                   ANAPLDELAKLCGFPGKLGMDGSKVWEAWNQGKADEVRAYCETDVVNTWLVYCRFRFLR
FT                   GELDRVAYDAEIALVRDTLAASDAPHWQEYLAAWDAA"
FT   CDS             complement(89414..90292)
FT                   /transl_table=11
FT                   /locus_tag="BB3018"
FT                   /product="putative peptidase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1721"
FT                   /db_xref="GOA:Q7WI38"
FT                   /db_xref="InterPro:IPR018392"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI38"
FT                   /protein_id="CAE33510.1"
FT                   /translation="MLNGQLQLTESQSVAGASAAAASRPVLWAGVLAIALLAGCASKGP
FT                   RAPVVDLTGQPGASGPTDGSYVVKPGDTLYKIARANNVDIENLKRWNNLTDPNQISVGQ
FT                   VLRLSSSGAGGAQTTPVTSSKPQPKPLDQGSAETPAGGMEAGGETGGATTPPAATVPDP
FT                   KPARAADAAVINWGWPANGAILQTFNSNTKGIDLAGSLGDPVIAAADGKVMYSGNGVRG
FT                   LGNLIIINHQNGFITAYAHNRALLVKTGQNVKRGAKIAEIGETDTTSPRLHFEIRRQGT
FT                   PVDPMQYLPPR"
FT   misc_feature    complement(89429..89677)
FT                   /note="HMMPfam hit to PF01551, DE Peptidase family M23/M37,
FT                   score 4.2e-33"
FT   misc_feature    complement(89966..90097)
FT                   /note="HMMPfam hit to PF01476, DE LysM domain, score
FT                   2.2e-18"
FT   CDS             complement(90310..90999)
FT                   /transl_table=11
FT                   /gene="pcm"
FT                   /locus_tag="BB3019"
FT                   /product="protein-L-isoaspartate O-methyltransferase"
FT                   /EC_number="2.1.1.77"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1720"
FT                   /db_xref="GOA:Q7WI37"
FT                   /db_xref="HSSP:1JG1"
FT                   /db_xref="InterPro:IPR000682"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WI37"
FT                   /protein_id="CAE33511.1"
FT                   /translation="MPRAPAQPAPLASGNLGLNSDRLRQAMVQRLRTQGIVDERVLNAM
FT                   AAVPRHLFVDEALASRAYEDAALPIGHSQTISQPWVVARMIAAVCEDRAPARVLEVGAG
FT                   CGYQAAVLAQIVREVHAIERIRGLYELARGHLRALRLATRVRLIHGDGMLGVPGVAPFD
FT                   AIVVAAAGLAIPQALLDQLAPGGRLIAPEGSTHQRLVLIERTGATAWSRKELEAVRFVP
FT                   LRAGIQS"
FT   misc_feature    complement(90316..90933)
FT                   /note="HMMPfam hit to PF01135, DE
FT                   Protein-L-isoaspartate(D-aspartate) O-methyltransferase
FT                   (PCMT), score 5.7e-68"
FT   misc_feature    complement(90505..90552)
FT                   /note="PS01279 Protein-L-isoaspartate(D-aspartate)
FT                   O-methyltransferase signature."
FT   CDS             complement(91074..91832)
FT                   /transl_table=11
FT                   /gene="surE"
FT                   /locus_tag="BB3020"
FT                   /product="stationary-phase survival protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1719"
FT                   /db_xref="GOA:Q7WI36"
FT                   /db_xref="InterPro:IPR002828"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WI36"
FT                   /protein_id="CAE33512.1"
FT                   /translation="MRILVSNDDGYNAPGLEALVEALSGLGELTVVAPETNHSGASNSL
FT                   TLNRPLTVRTASNGFIYVNGTPSDCVHVALTGLMDARPDLVVSGINNGANMGDDTLYSG
FT                   TVAAASEGYLFGIPSIAFSLIEKGWQHIESAARAARQVVERQIAQPLAAPVLLNVNIPN
FT                   RRYEDMKGYAVTRLGKRHPSEPVVRTTTPYGDTVYWIGPVGLAADATPGTDFHATAQGQ
FT                   VSVTPLRLDLTQHSQLDDVRNWAEPLCVNA"
FT   misc_feature    complement(91275..91832)
FT                   /note="HMMPfam hit to PF01975, DE Survival protein SurE,
FT                   score 3.2e-82"
FT   CDS             91958..92605
FT                   /transl_table=11
FT                   /locus_tag="BB3021"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1718"
FT                   /db_xref="GOA:Q7WI35"
FT                   /db_xref="InterPro:IPR003811"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WI35"
FT                   /protein_id="CAE33513.1"
FT                   /translation="MPATMVLTAPSLLSSSALIVLAYLIGSIPFAVVVSKLMGLQDPRS
FT                   YGSGNPGATNVLRTGNKTAAALTLLGDAAKGWFALWLARALVPELSWGAYALVALAVFL
FT                   GHLYPLFLRFKGGKGVATALGVLMAIEPWLAVATIATWLIVAVFSRYSSLAALVAAFFA
FT                   PVYYVFGSGAAWHARLEVGLAIAVISALLFYRHRANIARLLKGTESRIGKKK"
FT   misc_feature    91958..92023
FT                   /note="Signal peptide predicted for BB3021 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.978) with cleavage site
FT                   probability 0.879 between residues 22 and 23"
FT   misc_feature    join(91991..92059,92147..92206,92225..92293,92321..92389,
FT                   92408..92467,92477..92545)
FT                   /note="6 probable transmembrane helices predicted for
FT                   BB3021 by TMHMM2.0 at aa 12-34, 64-83, 90-112, 122-144,
FT                   151-170 and 174-196"
FT   misc_feature    92012..92575
FT                   /note="HMMPfam hit to PF02660, DE Domain of unknown
FT                   function DUF, score 8.4e-66"
FT   CDS             complement(92650..93690)
FT                   /transl_table=11
FT                   /gene="gcp"
FT                   /locus_tag="BB3022"
FT                   /product="probable glycoprotease"
FT                   /EC_number="3.4.24.57"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1716"
FT                   /db_xref="GOA:Q7WI34"
FT                   /db_xref="InterPro:IPR017861"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WI34"
FT                   /protein_id="CAE33514.1"
FT                   /translation="MIILGFESSCDETGVAAVCTERGLLAHALHTQIAMHQEYGGVVPE
FT                   LASRDHIRRVVPLTRQVLAEAGLTLADVGAVAYTAGPGLAGALLVGASVAQALAWSRAL
FT                   PAIGIHHLEGHLLSPLLAEPRPEFPFVALLVSGGHTQLMRVDGVGRYELLGETLDDAAG
FT                   EAFDKSAKLMGLGYPGGPALARLAEQGDASRYDLPRPMLHSGDLDFSFSGLKTAVLTRV
FT                   KAATRDGGELGEQDRADLAAATQAAIVEVLAAKAIRALKQTGLRRLVVAGGVGANALLR
FT                   AHLARALKPLRAEAYFPPLSLCTDNGAMIAFAAAERVKAGLADLREGDHAFTVRPRWDL
FT                   ADIQAG"
FT   misc_feature    complement(92734..93690)
FT                   /note="HMMPfam hit to PF00814, DE Glycoprotease family,
FT                   score 1.1e-154"
FT   CDS             93825..95117
FT                   /transl_table=11
FT                   /locus_tag="BB3023"
FT                   /product="permease"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1715"
FT                   /db_xref="GOA:Q7WI33"
FT                   /db_xref="InterPro:IPR006043"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI33"
FT                   /protein_id="CAE33515.1"
FT                   /translation="MLEKLFQLRDHATTVRTEIVAGLTTFLTMSYIIFLNPDILSSTGM
FT                   DRNAVFVATCLAAALGSLIMALVANWPIGMAPGMGLNAFFAFTVVKTMGYTWEQALGAV
FT                   FISGVIFLFLTISGIRAWLIRGIPHSLRSAIAAGIGLFLAIIALSNANIVVAHPATKVT
FT                   LGDLREPGPLFAILGFFIIAALDALRVRGAILIGILSVTVLSMLLGYNQFNGIFSSPPS
FT                   LAPTFMQLDILGALHTGFVHVILVFVLVEVFDATGTLMGIAKRAGLVPEDRPNRLGRAL
FT                   FADSTAIVAGSMLGTSSTTAYVESASGVQAGGRTGLTALVVALLFLAALFIAPLAGSVP
FT                   AYATAPALLYVAGLMMRELIDIDWNDVSEATPAALTALVMPFTYSIANGLAFGFISYVV
FT                   LKTCTGRIREVHPATWLVAILFIVRYAFFPE"
FT   misc_feature    join(93858..93926,93969..94037,94056..94115,94128..94196,
FT                   94221..94289,94332..94385,94404..94472,94515..94583,
FT                   94782..94850,94953..95021,95055..95108)
FT                   /note="11 probable transmembrane helices predicted for
FT                   BB3023 by TMHMM2.0 at aa 12-34, 49-71, 78-97, 102-124,
FT                   133-155, 170-187, 194-216, 231-253, 320-342, 377-399 and
FT                   411-428"
FT   misc_feature    93870..95000
FT                   /note="HMMPfam hit to PF00860, DE Permease family, score
FT                   3.2e-35"
FT   CDS             95323..96348
FT                   /transl_table=11
FT                   /locus_tag="BB3024"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1714"
FT                   /db_xref="GOA:Q7WI32"
FT                   /db_xref="InterPro:IPR019949"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI32"
FT                   /protein_id="CAE33516.1"
FT                   /translation="MSVLASVPFSVLDLAPIVQGGTAAQAFRNTVDLARHVEGWGYRRF
FT                   WLAEHHNITGVASSATAVLIGHVAAHTSTLRVGSGGVMLPNHAPLIIAEQFGTLESLFP
FT                   GRIDLGLGRAPGSDGATQQALRRGPRSGLDFPELLHELRAYLAPARPGQPVRAIPGAGT
FT                   DVPIWLLGSSDFSARLAAELGLPFSFAGHFSPEGMAAMRLYRQLFKPSQTLARPHAMIG
FT                   VPVVAADTDEQAHFLSTTQQLKFLSLIRGNRLPLQPPVESMDGIWNEWERSAVQQRLGA
FT                   AIVGGPDTVKRELESLVAQTQADEVMIVSDFYDFSDRLRSYEIVASLKQDAGVSTRTAN
FT                   A"
FT   misc_feature    95341..96228
FT                   /note="HMMPfam hit to PF00296, DE Luciferase-like
FT                   monooxygenase, score 1.9e-31"
FT   CDS             96484..96867
FT                   /transl_table=11
FT                   /gene="trxC"
FT                   /locus_tag="BB3025"
FT                   /product="thioredoxin 2"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1713"
FT                   /db_xref="GOA:Q7WI31"
FT                   /db_xref="HSSP:1KEB"
FT                   /db_xref="InterPro:IPR013766"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI31"
FT                   /protein_id="CAE33517.1"
FT                   /translation="MSIVELTKDTFQDAITPDGTLIIDFWAPWCGPCRGFAPVFEQAAE
FT                   QHPDVTFAKVNTDVEQELAGALGIRSIPTLMVFREKVLLFSQPGALSAGQLGELLTKVK
FT                   EVDMAEVHRDIAQARENGAGEQA"
FT   misc_feature    96487..96798
FT                   /note="HMMPfam hit to PF00085, DE Thioredoxin, score
FT                   1.1e-27"
FT   misc_feature    96547..96603
FT                   /note="PS00194 Thioredoxin family active site."
FT   CDS             complement(96886..97473)
FT                   /transl_table=11
FT                   /locus_tag="BB3026"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1712"
FT                   /db_xref="HSSP:1VI7"
FT                   /db_xref="InterPro:IPR001498"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI30"
FT                   /protein_id="CAE33518.1"
FT                   /translation="MMHTLAAACRHQEEIKKSRFAAYAAPVGTIAEAMAHFAAHSDPAA
FT                   THNCWAYRIGNEYRFNDDGEPGGTAGRPILQAIDGQGLDRVAVLVVRWFGGIKLGAGGL
FT                   VRAYGGCAANCLRAGERLPVIALATVRCRCGFAELPLLQARLAQAGASVRSETFDADGA
FT                   QLELDVPCAALEELARTFANITRGRGGWDVQA"
FT   misc_feature    complement(97114..97431)
FT                   /note="HMMPfam hit to PF01205, DE Uncharacterized protein
FT                   family UPF0029, score 1e-49"
FT   misc_feature    complement(97174..97263)
FT                   /note="PS00910 Uncharacterized protein family UPF0029
FT                   signature."
FT   CDS             complement(97511..98368)
FT                   /transl_table=11
FT                   /locus_tag="BB3027"
FT                   /product="putative substrate-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1710"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI29"
FT                   /protein_id="CAE33519.1"
FT                   /translation="MIAMTAPSTSHLSRLCLAALLAVALPALPGAAAQPGAAADPLAAA
FT                   RARGVLVVGVPFLADAPLAGAKVRTPERLDGVAAERLARQLGLPLQLRRLAAGDAAAQL
FT                   ASGAVDLVLADRRDGAPLAAQAPGMAVVGTGYATAPKAVIRGDTALRRWQDVAGHSVCM
FT                   ADAAQGAQALAQRHGATVRTYRAPSDALVAVREGACDLALIDDAVWAPLMKFPEWKKFS
FT                   ATLAPQGPRAELVWVAAPADAAWLAAQMQAWRREGAWTAMTAKWARDVAFDVYLDQEVP
FT                   DCHG"
FT   misc_feature    complement(98255..98368)
FT                   /note="Signal peptide predicted for BB3027 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.393 between residues 38 and 39"
FT   CDS             complement(98396..99169)
FT                   /transl_table=11
FT                   /locus_tag="BB3028"
FT                   /product="putative permease of ABC transporter"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1709"
FT                   /db_xref="GOA:Q7WI28"
FT                   /db_xref="InterPro:IPR000515"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI28"
FT                   /protein_id="CAE33520.1"
FT                   /translation="MSSSTRVTGARKHLAGVLGVLFILALWQAAAWVLPDFLMPGVPTV
FT                   AQRLVEDLGQASFHQSLLGTLGRLGAGYGLALAAGIGFGLVAAVLFFFREVLRSAIVIL
FT                   QSIPSIAWVPLFLIVMGFGNTPIIVVVALSAFFPAALSVMNATESVQRVHVSAARVMGA
FT                   TRWGLVKRVYLPAVMPELITGAQLAFGNAWRALISAEMLIGFGKGLGRSLAYSGEIADM
FT                   TGVMTNILVIAVLAALIDQFVLENLKHRLLRYQYV"
FT   misc_feature    complement(join(98438..98506,98603..98671,98732..98791,
FT                   98804..98872,98891..98959,99065..99133))
FT                   /note="6 probable transmembrane helices predicted for
FT                   BB3028 by TMHMM2.0 at aa 13-35, 71-93, 100-122, 127-146,
FT                   167-189 and 222-244"
FT   misc_feature    complement(98498..98734)
FT                   /note="HMMPfam hit to PF00528, DE Binding-protein-dependent
FT                   transport systems inner membrane component, score 2.3e-10"
FT   misc_feature    complement(99077..99169)
FT                   /note="Signal peptide predicted for BB3028 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.960) with cleavage site
FT                   probability 0.551 between residues 31 and 32"
FT   CDS             complement(99166..100164)
FT                   /transl_table=11
FT                   /locus_tag="BB3029"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1708"
FT                   /db_xref="InterPro:IPR015168"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI27"
FT                   /protein_id="CAE33521.1"
FT                   /translation="MKLKQWLSLPLAAALLAAAPAMAAEKFRVGYLRVMDDAQAIVAQE
FT                   GGYYKKAGLDSELIEFKSGTDLIKAIVGGQLDIGVLGFTNAVAWASKGADLKVVGGAQQ
FT                   GYHSLLVRDDSGIKDIAGLKGKTLASQAEGSTADVVLKGVVLKEGKLGADDVNVMGVSP
FT                   AVAVQSLVGKRVDAAFLFEPYDRIAQLVAPVKQIYEVGQAWPFPCMVVITSGDVLAKRK
FT                   DDVWKALDAQKEAIDLLQNKPADASRLIASYFIAEPTLKTLTRGELPRETVISEAISTQ
FT                   VFTPKLTDKDTNRMQEIADILQAQGSLKTRDGKPYDVSSIVDLSWQEARKL"
FT   misc_feature    complement(100096..100164)
FT                   /note="Signal peptide predicted for BB3029 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 1.000 between residues 23 and 24"
FT   CDS             complement(100249..101025)
FT                   /transl_table=11
FT                   /locus_tag="BB3030"
FT                   /product="putative ABC-transport protein, ATP-binding
FT                   component"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1707"
FT                   /db_xref="GOA:Q7WI26"
FT                   /db_xref="HSSP:1G29"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI26"
FT                   /protein_id="CAE33522.1"
FT                   /translation="MNLTFDHVHKSFGSLNVVDGFSSEFKTGELVALVGPSGCGKSTLL
FT                   HLAAGLEQASQGRVLADGKPVQGPHPSRTLVFQEHALYPWLTLRDNVALALEFQNAPKA
FT                   QARQQAVHWLERVGLGGFDAYYPHQVSGGMRQRAALARAFIAQPQTLLMDEPFGALDAL
FT                   TRLSLQDVLRQLIEQEKPSVVLVTHDVDEALFLADRIVVFSQRPARVLREFNLAHRARS
FT                   HDLSDLASEKREILRLLGIEVDSHGHGHGPKVALAA"
FT   misc_feature    complement(100408..100944)
FT                   /note="HMMPfam hit to PF00005, DE ABC transporter, score
FT                   2.4e-52"
FT   misc_feature    complement(100594..100638)
FT                   /note="PS00211 ABC transporters family signature."
FT   misc_feature    complement(100900..100923)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             complement(101180..102847)
FT                   /transl_table=11
FT                   /locus_tag="BB3031"
FT                   /product="probable ATP-binding ABC transporter protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1706"
FT                   /db_xref="GOA:Q7WI25"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI25"
FT                   /protein_id="CAE33523.1"
FT                   /translation="MVHYRVYLHCALAARQARTYTVISTANLTIQFGPKPLFENVSVKF
FT                   GEGNRYGLIGANGSGKSTFMKIIGGDLEPSAGNVSLEPGVRLGKLRQDQFAFEEVRVLD
FT                   VVMMGHTEMWAAMSERDAIYANPEATEDDYMRAADLEAKFAEYDGYTAEARAGELLLGL
FT                   EIAVDQHNLLMREIAPGWKLRVLLAQALFSNPDVLLLDEPTNNLDINTIRWLENVLNGY
FT                   QSTMIIISHDRHFLNQVCTHMADVDYGEIRVYPGNYDDYMLASTQARERLTANNAKAKE
FT                   RIVELQDFVRRFAANKSKSRQATSRLKQIDRIKADQVEVKPSSRQNPYIRFEQNKVMHR
FT                   LAVTIEKLSKSYDQPVIRDFSAMVDAGEKVAIIGANGVGKTTLLRMLATDLAPDSGTVK
FT                   WSENADIGYMAQDVSDQFQQGDINLFDWMAEHRQPGDDDQSIRSALGRLLFSGDDLPKA
FT                   PKVLSGGEKNRMTFGRLMLGRHNVMLLDEPTNHLDMESIESLQFALEKYEGTLIFVSHD
FT                   REFVSGLATRIIEILPDGELVDYRGGYEDYLASRGIEA"
FT   misc_feature    complement(101246..101749)
FT                   /note="HMMPfam hit to PF00005, DE ABC transporter, score
FT                   1.4e-35"
FT   misc_feature    complement(101420..101464)
FT                   /note="PS00211 ABC transporters family signature."
FT   misc_feature    complement(101705..101728)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    complement(102101..102706)
FT                   /note="HMMPfam hit to PF00005, DE ABC transporter, score
FT                   7.7e-37"
FT   misc_feature    complement(102662..102685)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             103164..104288
FT                   /transl_table=11
FT                   /locus_tag="BB3032"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1705"
FT                   /db_xref="GOA:Q7WI24"
FT                   /db_xref="InterPro:IPR006311"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI24"
FT                   /protein_id="CAE33524.1"
FT                   /translation="MQHVTQSRRKFISGAGAVAGTAVLGFPAVTRAQGSPVSLRFQSTW
FT                   PANDIFHEFAQDYARKVNDMAEGQLKIEVLPAGAVVKAFDLLDAVSAGTLDGGHGVVAY
FT                   WYGKNTAVALWGSGPSFGMDANMLLAWHEYGGGKELLTEIQKAMGVNVTSLMYGPMPTQ
FT                   PFGWFKKPITKADDVKGAKFRTVGLAIDMYSAMGAAVNALPGGEIVPALDRGLLDGAEF
FT                   NNASSDLALGFQDVSKICMLQSFHQSAEQFEILFNKNKYDALPKHLKHILAYAAQAASA
FT                   DMSWKAADRYSKDYIKLQKDHNVKFYKTPDAILQQQLKIWDEMIAKRSAENPLFKKVLD
FT                   SQRQFAERAGRWSNDTNVNFRMAFNHYFARKQPA"
FT   misc_feature    103164..103259
FT                   /note="Signal peptide predicted for BB3032 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.996) with cleavage site
FT                   probability 0.769 between residues 32 and 33"
FT   misc_feature    103284..104147
FT                   /note="HMMPfam hit to PF03480, DE Bacterial extracellular
FT                   solute-binding protein, family 7, score 1.6e-19"
FT   CDS             104415..105038
FT                   /transl_table=11
FT                   /locus_tag="BB3033"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1704"
FT                   /db_xref="InterPro:IPR007387"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI23"
FT                   /protein_id="CAE33525.1"
FT                   /translation="MLRLIRLVDRLSTFVGQAFAWLIVVLTLHICWEVSARYILNTPSA
FT                   WAFDLQLMYYGILFMMAGAYTLAKNGHVRGDILYGFLPPRVQAGLDLLLYILFFIPGVV
FT                   AMVWAGWYYAGESIAIREHSSLMANGPPIYPFKAFIPIAGAFLLLQGLAEIARCLLCLR
FT                   KGQWPSRAEDVEEVDVDKLKEMVHVKDEDIAELDQYVEKGEQTR"
FT   misc_feature    join(104451..104510,104568..104627,104688..104756,
FT                   104826..104894)
FT                   /note="4 probable transmembrane helices predicted for
FT                   BB3033 by TMHMM2.0 at aa 13-32, 52-71, 92-114 and 138-160"
FT   CDS             105035..106936
FT                   /transl_table=11
FT                   /locus_tag="BB3034"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1703"
FT                   /db_xref="InterPro:IPR010656"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI22"
FT                   /protein_id="CAE33526.1"
FT                   /translation="MKIHKALWFGLSCIGLVLLMIAFLTPWDHLTTGHIGLLMLALIVV
FT                   AIMLGFPTAFTLMGMGVLFTFLAYFMQHEDGARAVRQTLDLMVQRTYATMTNDSLISVP
FT                   LFVFMGYLVERANLIERLFRSMHLALARLPGALGVATLITCAIFATATGIVGAVVTLMG
FT                   LLAMPAMLKAGYSVRLTAGSITAGGCLGILIPPSVMLIVYGATTGVSVVQLYAGAFFPG
FT                   IMLAGLYVLYVMIVAKLRPDMAPPLSKEERHIPLQPGAEALRRQGYRHAVPGLLAGLFK
FT                   RRDPQITGSFLARNLMLVAAPLAAFVLITGATYSTVTEPPVVYEIPDELRLGSGDSFDS
FT                   GLAEPPSEDGGLAEPPGAAAAPEAAAAQAEAAEAAEDAAAERLPAPYGFWVFFAVCVAL
FT                   LAVFYALLNWTRLEVVRLLMSSFFPLALMIVAVLGSIVFGLATPSEAAAMGALGGALLA
FT                   LAYRRLTMPVLRESVYLTAKTSAMVCWLFVGSSIFSAAFALLGGQGLVEQWVLSLGLTP
FT                   IQFMLLAQIIIFLLGWPLEWTEIIVIFMPIFVPLLKAFGIDPLFFGLLVALNLQTAFLS
FT                   PPVAMSAFYLKGVAPPHVTLNQIFLGMMPFMGIQLLAIFLLYMFPGIGLWLPTVLYR"
FT   misc_feature    105035..105106
FT                   /note="Signal peptide predicted for BB3034 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.848) with cleavage site
FT                   probability 0.477 between residues 24 and 25"
FT   misc_feature    join(105053..105106,105149..105244,105305..105373,
FT                   105431..105532,105569..105637,105665..105733,
FT                   105905..105973,106196..106264,106283..106351,
FT                   106364..106417,106478..106537,106565..106633,
FT                   106652..106720,106850..106918)
FT                   /note="14 probable transmembrane helices predicted for
FT                   BB3034 by TMHMM2.0 at aa 7-24, 39-70, 91-113, 133-166,
FT                   179-201, 211-233, 291-313, 388-410, 417-439, 444-461,
FT                   482-501, 511-533, 540-562 and 606-628"
FT   CDS             106985..107779
FT                   /transl_table=11
FT                   /locus_tag="BB3035"
FT                   /product="probable enoyl-CoA hydratase/isomerase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1702"
FT                   /db_xref="GOA:Q7WI21"
FT                   /db_xref="HSSP:1HZD"
FT                   /db_xref="InterPro:IPR001753"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI21"
FT                   /protein_id="CAE33527.1"
FT                   /translation="MLQTLEVAYGPQTAVVWLNRPDVRNALDPRMIAELTETFMALGAD
FT                   NEVRAIVLAGRGKAFCAGADLNWMRRSAQAGDAENRADAQTLATMLHTIYTCPKPTIAR
FT                   IHGPCMAGGMGLAAACDIAVASHEARFALTETRLGLIASVISPYVLRAMGARTASRWFL
FT                   SAEAFEATEAWRIGLVHELCEADRLDGQINELLGSFMLTSPHAVAQAKRLIRDVAGAPI
FT                   DAALLEETAARIAEQRASADGREGLASFLEKRQPAWVPQQDQ"
FT   misc_feature    107024..107536
FT                   /note="HMMPfam hit to PF00378, DE Enoyl-CoA
FT                   hydratase/isomerase family, score 8.3e-46"
FT   CDS             complement(107792..108793)
FT                   /transl_table=11
FT                   /gene="ldcA"
FT                   /locus_tag="BB3036"
FT                   /product="muramoyltetrapeptide carboxypeptidase"
FT                   /EC_number="3.4.17.13"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1701"
FT                   /db_xref="GOA:Q7WI20"
FT                   /db_xref="InterPro:IPR003507"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI20"
FT                   /protein_id="CAE33528.1"
FT                   /translation="MTKKKNPPASHGHDHHEHHGHEPGHVCDAGCVHAPAQASGIYLVS
FT                   PSSAVRDAAELELACQRLAAEGFQAKVDRAALAVHQRFAGTDKQRAAGLQRAIKQKHPI
FT                   VMATRGGYGLIRLLPMIDWRAMADSGKRFVGMSDFTAFNLALLAQTGAVSYSGATAVRD
FT                   FGLAKTDELTVALFGEIMRGELEILSFETRDADAFDGRGVLWGGNLATLVSLLGTPYMP
FT                   KVRGGILFLEDVAEHPYRVERMLAQLWQAGVLERQKAIVLGSFSDYRLAAHDNGYDMHA
FT                   VVGWLRKTVKVPVVTGLPYGHTDTKATLPIGKKVGLATERGMAHLVIDEHTH"
FT   misc_feature    complement(107813..108475)
FT                   /note="HMMPfam hit to PF02016, DE Uncharacterized protein
FT                   family UPF0094, score 4.9e-59"
FT   CDS             complement(108790..109296)
FT                   /transl_table=11
FT                   /gene="cumB"
FT                   /locus_tag="BB3037"
FT                   /product="putative zinc-binding hydrolase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1700"
FT                   /db_xref="GOA:Q7WI19"
FT                   /db_xref="HSSP:1P6O"
FT                   /db_xref="InterPro:IPR002125"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI19"
FT                   /protein_id="CAE33529.1"
FT                   /translation="MADALVSETDPCVADDARLMALALEQAQEAARLGEVPVGAVVVDA
FT                   QGEVLGAGYNRTIIDRDPTAHAEIVALRAAARRLDNYRLPGVSLYVTLEPCVMCIGAML
FT                   HARLARVVYGARDPKTGACGSVLDVGAVGQLNHHTTITGGVLAEPCGELLRGFFRARRA
FT                   KESPV"
FT   misc_feature    complement(108952..109260)
FT                   /note="HMMPfam hit to PF00383, DE Cytidine and
FT                   deoxycytidylate deaminase zinc-binding region, score
FT                   1.1e-35"
FT   misc_feature    complement(108988..109101)
FT                   /note="PS00903 Cytidine and deoxycytidylate deaminases
FT                   zinc-binding region signature."
FT   CDS             complement(109289..110137)
FT                   /transl_table=11
FT                   /locus_tag="BB3038"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1699"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI18"
FT                   /protein_id="CAE33530.1"
FT                   /translation="MSDVIALVFDFDDTLASDSTTGFLESIGVDTASFWKDQVDPLLSQ
FT                   QDWDPVPAYLYQMIQLSRQGSHGLITRERLREWGARLALHDGVQTLFGRLRAAVRAEHP
FT                   KVQLEFYLISSGIGDVVRATPIAHEFTEIWASEFVYGEDGGISFPRRIVSFTDKTRYLF
FT                   HIQKGLIGREYRNKPFEVNRKVPEDRLRVPFDQMVFVGDGYTDIPCFSLIRSAGGFAFG
FT                   VWDPKHRDKRSRAWGFIEEGRVSNLNQARYDEQAELYQWLEEAVTSLAGRIALKSRVYR
FT                   G"
FT   CDS             complement(110235..110804)
FT                   /transl_table=11
FT                   /locus_tag="BB3039"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1698"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI17"
FT                   /protein_id="CAE33531.1"
FT                   /translation="MTAAAYFKERNMSKIRIQRWCGALALGAGSLMAFGAHAAGTGSGQ
FT                   SQYQMDVQRCNSGDTSQDRATCLREAGAARQESQRNRLDDKQEGRYQDNAMMRCKNLPA
FT                   SQQQDCITQMTSGNTTTRGSVGGGGVLRETVIQVPAGTPGSTPGTPMPGGQMPSGQMPS
FT                   GQMPGAAPGGLQPPPAGTVAPPPVMR"
FT   misc_feature    complement(110691..110804)
FT                   /note="Signal peptide predicted for BB3039 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.999 between residues 38 and 39"
FT   CDS             complement(110905..111231)
FT                   /transl_table=11
FT                   /gene="phaG"
FT                   /locus_tag="BB3040"
FT                   /product="putative pH adaptation potassium efflux protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1696"
FT                   /db_xref="GOA:Q7WI16"
FT                   /db_xref="InterPro:IPR005133"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI16"
FT                   /protein_id="CAE33532.1"
FT                   /translation="MIDVDIPLWAGIPAAILLVLGGLLTLTGALGMLRFGHFYARIHAP
FT                   TLGNTMGACSVLTASILVFSSLSMRPVVHEFVIGMLLVLTSPVTGMLLMRAAVYRARRA
FT                   DDSA"
FT   misc_feature    complement(110911..111231)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF03334, DE Na+/H+ antiporter
FT                   subunit, score 9.5e-11"
FT   misc_feature    complement(join(110935..111003,111031..111099,
FT                   111136..111204))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BB3040 by TMHMM2.0 at aa 10-32, 45-67 and 77-99"
FT   CDS             complement(111228..111512)
FT                   /transl_table=11
FT                   /gene="phaF"
FT                   /gene_synonym="phaF1"
FT                   /locus_tag="BB3041"
FT                   /product="pH adaptation potassium efflux system protein F"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1695"
FT                   /db_xref="GOA:Q7WI15"
FT                   /db_xref="InterPro:IPR007208"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI15"
FT                   /protein_id="CAE33533.1"
FT                   /translation="MMNIVLYWSASFALLCFALAMACAAIRLLRGPTAQDRVLALDSLY
FT                   VSGMLTMLVFGIRAGTPVYFDIALLIALFGFVGSTAMAKFLLRGEVIEP"
FT   misc_feature    complement(join(111252..111320,111333..111401,
FT                   111435..111503))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BB3041 by TMHMM2.0 at aa 4-26, 38-60 and 65-87"
FT   misc_feature    complement(111444..111476)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    complement(111447..111512)
FT                   /note="Signal peptide predicted for BB3041 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.999) with cleavage site
FT                   probability 0.746 between residues 22 and 23"
FT   CDS             complement(111509..111988)
FT                   /transl_table=11
FT                   /gene="phaE"
FT                   /locus_tag="BB3042"
FT                   /product="putative pH adaptation potassium efflux protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1694"
FT                   /db_xref="GOA:Q7WI14"
FT                   /db_xref="InterPro:IPR002758"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI14"
FT                   /protein_id="CAE33534.1"
FT                   /translation="MMRRYYLALLPLAMLALWLMLNQSASVGQLALGAALALWLGWASS
FT                   RLRPLRGKPRRLWLLPGLAARVFADIVRSNVAVARLVWQRRPDFSPGFIAIPLDLHDPH
FT                   GLAILACIVTYTPGTVWVDIIDGKLVLHVLDLQNEEAWIALVKQRYERTLIEVFE"
FT   misc_feature    complement(111515..111826)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF01899, DE Protein of unknown
FT                   function DUF68, score 0.00015"
FT   misc_feature    complement(join(111860..111913,111923..111976))
FT                   /note="2 probable transmembrane helices predicted for
FT                   BB3042 by TMHMM2.0 at aa 5-22 and 26-43"
FT   misc_feature    complement(111914..111988)
FT                   /note="Signal peptide predicted for BB3042 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.389 between residues 25 and 26"
FT   CDS             complement(111985..113613)
FT                   /transl_table=11
FT                   /gene="phaD"
FT                   /locus_tag="BB3043"
FT                   /product="putative pH adaptation potassium efflux protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1693"
FT                   /db_xref="GOA:Q7WI13"
FT                   /db_xref="InterPro:IPR001750"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI13"
FT                   /protein_id="CAE33535.1"
FT                   /translation="MIDWLQHLPIYPITVPLIAGALMLLLPDTQRKTRAGIGLLSSLLQ
FT                   LVSAIALLSLAAGAGGLWPDGIGVYLPGDWPAPFGIVLVVDRLAAVMLALTAVLGLAAL
FT                   IYSLARWDRAGVHFHSLYQFLLMGLNGAFLTGDLFNLFVFFEVLLAASYGLMLHGSGIA
FT                   RVTAGLQYIAVNLVASFLLLISIALIYGVTGTLNLADLALRAGTLTGGERSLFEAGAAI
FT                   LGVAFLVKAGAWPLNFWLVKGYGSAAAPVAALFSIMTKVGIYALLRIGSLLLPTGAPAA
FT                   FSLDWMFAAGLATLVFGGLGLLANQQLEKLTGYCVIVSAGTLLTALGMPGVTLTGPALF
FT                   YLISSVLATGALFMLVELIERTRSFGANVLAVTMDLFDLDDPSTPNRSDDVVGVAIPAA
FT                   MAFLGLAFVSCALLVTGLPPLSGFVAKFSLLSAAVTAANTPSVALDAWVLVALVLLSGL
FT                   AGLIALGRVGIRIFWSSDDRVTPRLRLMEAGPVAVLLLLCVVLAAGAGPVSAYLDAAAQ
FT                   SLDRPATYVNAVLAKQPARALSEGL"
FT   misc_feature    complement(join(112078..112146,112207..112275,
FT                   112369..112437,112537..112605,112615..112683,
FT                   112702..112770,112813..112881,112894..112962,
FT                   113020..113088,113125..113193,113206..113274,
FT                   113287..113355,113431..113499,113536..113604))
FT                   /note="14 probable transmembrane helices predicted for
FT                   BB3043 by TMHMM2.0 at aa 4-26, 39-61, 87-109, 114-136,
FT                   141-163, 176-198, 218-240, 245-267, 282-304, 311-333,
FT                   337-359, 393-415, 447-469 and 490-512"
FT   misc_feature    complement(112234..113211)
FT                   /note="HMMPfam hit to PF00361, DE
FT                   NADH-Ubiquinone/plastoquinone (complex I), various chains,
FT                   score 2.1e-15"
FT   CDS             complement(113610..113954)
FT                   /transl_table=11
FT                   /gene="phaC"
FT                   /locus_tag="BB3044"
FT                   /product="putative pH adaptation potassium efflux protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1692"
FT                   /db_xref="GOA:Q7WI12"
FT                   /db_xref="InterPro:IPR001133"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI12"
FT                   /protein_id="CAE33536.1"
FT                   /translation="MEVVYALAIGVLAGSGVWLLLRPRTFQVIMGLSLLSYAVNLFIFG
FT                   MGRLTVGRPPVVSASAPVDAAAYADPLPQALVLTAIVIGFATTALFLVVLLASRGLTGT
FT                   DHVDGREPES"
FT   misc_feature    complement(113619..113954)
FT                   /note="HMMPfam hit to PF01898, DE Protein of unknown
FT                   function DUF67, score 1e-42"
FT   misc_feature    complement(join(113664..113732,113805..113873,
FT                   113892..113945))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BB3044 by TMHMM2.0 at aa 4-21, 28-50 and 75-97"
FT   CDS             complement(113954..116887)
FT                   /transl_table=11
FT                   /gene="phaA"
FT                   /locus_tag="BB3045"
FT                   /product="putative pH adaptation potassium efflux protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1691"
FT                   /db_xref="GOA:Q7WI11"
FT                   /db_xref="InterPro:IPR003916"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI11"
FT                   /protein_id="CAE33537.1"
FT                   /translation="MSLLLVLALPFLGSLCAALLPANARNAEAWLAGLIALACTLLVAS
FT                   LYPQIAAGGVIRADLPWAPALGLQFTLRMDGYAWLFALIISGMGALVVLYARYYMSPED
FT                   PVPRFFSFFQAFMAAMLGVVMSGNLIQLVMFWEMTSLASFMLIAYWHHRLDARRGARMA
FT                   LTVTGAGGLSLLAGVLMLGHIVGSYDMDQVLAAGDIVRADPWYPAVLVLIALGALTKSA
FT                   QFPFQFWLPNAMAAPTPVSAYLHSATMVKAGVFLLARFWPVLAGTDEWFWIIGGAGLCS
FT                   LVLGAYAAIFQQDMKGVLAYSTISHLGLITLMLGLNSSLGLVAAIFHMVNHATFKASLF
FT                   MAAGIVDHETGTRDVGRLSGLYGAMPITATLAMVAAASMAGVPLLNGFISKEMFFAETT
FT                   FVSGDVLVRWGLPLMATLAGAFSVTYSLRFILQVFFGPPAEDLPRAPHEPPRWMLLPSA
FT                   LLVMVCLVVGVLPGVTLGPILHLAASSILGEHMPQYSLSVWHGFNLPLAMSFVALTAGV
FT                   LLYLALRARQRAHPGLVPFIYRFDGRRTFEYLLDASSVAAAWLLRYLASSRMQVQMLVI
FT                   VLGTLWVAWLPLRAGGWLSGQARLTPADPAFAILWVVGAACALGAAYQAKYHRLASLTL
FT                   SGGAGLITCLTFVWFSAPDLALTQLAVEVVTVVLLLLGLRWLPRRIQTGGDEERPDLRA
FT                   RVRRLRDLGLAGVAGACMAALAYAVLTRPVGDTISSFFTERALPDGGGTNVVNVILVDF
FT                   RGFDTLGEITVLGIVALTVYALLRRFRPAPESVELPHQQREQDGMPTVDETGERPAPDT
FT                   KSPLPAGPMMIPAVLVRLLLPVAVLVSVYLLLRGHNLPGGGFVGGLIMATAIILQYMVG
FT                   GVYWVESRSRLNPQHWVGLGLLAAGGAAVSAWLALRPFLSALAWDVALPVVGHVHLSSV
FT                   LLFDLGVYMLVVGATVLVLVALAHQSLRAQRQAAVEAQAVAQTGSPA"
FT   misc_feature    complement(join(114032..114100,114158..114226,
FT                   114260..114328,114356..114415,114560..114613,
FT                   114725..114793,114854..114922,114932..115000,
FT                   115019..115072,115100..115168,115319..115387,
FT                   115445..115513,115721..115789,115910..115978,
FT                   116015..116083,116093..116161,116198..116266,
FT                   116333..116401,116480..116548,116591..116659,
FT                   116720..116788,116816..116884))
FT                   /note="22 probable transmembrane helices predicted for
FT                   BB3045 by TMHMM2.0 at aa 2-24, 34-56, 77-99, 114-136,
FT                   163-185, 208-230, 243-265, 269-291, 304-326, 367-389,
FT                   459-481, 501-523, 574-596, 606-623, 630-652, 656-678,
FT                   699-721, 759-776, 825-844, 854-876, 888-910 and 930-952"
FT   misc_feature    complement(115619..116512)
FT                   /note="HMMPfam hit to PF00361, DE
FT                   NADH-Ubiquinone/plastoquinone (complex I), various chains,
FT                   score 7.8e-70"
FT   misc_feature    complement(116816..116887)
FT                   /note="Signal peptide predicted for BB3045 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.409 between residues 24 and 25"
FT   CDS             117310..118293
FT                   /transl_table=11
FT                   /locus_tag="BB3046"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248)
FT                   BP1690+BP2631"
FT                   /db_xref="GOA:Q7WI10"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI10"
FT                   /protein_id="CAE33538.1"
FT                   /translation="MRKPASIKILLGALVAGACVTGAAAQAQPYPNHAVRLIVPFAAGG
FT                   TTDIVARIVAEGLGRELGQPVVVENRGGGGGAIGADALAKATPDGYTLGVATVSTMATN
FT                   PATNPQTPYDPLKDFTPITNLVSVPNVMTVNPKIAAQTLKEFIALVKANPGKYSYASSG
FT                   TGSISHLDGELFKSLTGTDMVHVPYRGSGPALNDTIAGQVNAQFDNLPSSIPHIQAGKL
FT                   RALAVAAPKRVSALPDVPTFGEAGYPAMDNMAWYGLVAPAGVPPEVVKRVHDAAVKALQ
FT                   DPKIRKRLEDGGSIVEGSTPTEYASLIKRELELRKRIATEQKIQLN"
FT   misc_feature    117310..117390
FT                   /note="Signal peptide predicted for BB3046 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.910 between residues 27 and 28"
FT   misc_feature    117334..117366
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    117457..118281
FT                   /note="HMMPfam hit to PF03401, DE Uncharacterized protein
FT                   family, UPF0065, score 1e-113"
FT   CDS             complement(118341..120986)
FT                   /transl_table=11
FT                   /locus_tag="BB3047"
FT                   /product="putative GTP-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2632"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI09"
FT                   /protein_id="CAE33539.1"
FT                   /translation="MKLRRIALEAFRKFRQPVALEDLDGGLNIIVGPNEAGKSTFVAAL
FT                   RAAFLERYATNKPLADLAPWDMPDARPSVTVDFTHDGHAYSLRKQFLHRARCELLIDGG
FT                   AQRHEGEEAENLLARLLGYEFAGRGLSRPEHAGVPGLLWIQQGEGQTLLAPAGHAGMHV
FT                   RAALTEVSGELAATDGDRLFERVAAERAALLDARGGRPKGAYKEAEEAWARAREQCETL
FT                   AAAKRQVDDDVDRLARLRAEYERAQREQPWQAMAERAAQARQRLEGIARERQALEQLQR
FT                   ELAQAGETLALLAEQVGRDQHDAEALAQLRNDAQAAQQAMEPARAALERVQAGQGELAA
FT                   QVAHWRERLAGAQAGAERGDLAEQLARLQADAQRQQQALQQAAELAAAVAGHQAQLAES
FT                   AIDADTVARLREQERLLNELRAQQRAMATRLHHRLLPGKQVELDGVALAGDAQVLITSA
FT                   ARVRIDGVGELEILPGGRDLPALLDELRARGAERDALLGKLGVPDLAGAEARLAASEQA
FT                   RRDLDMARKALRIHAPDGVPALQAEQAEQAATARRRDQLQARLQALPPAAAGDMPPLAE
FT                   IQQALRAAEQAAEHGARATVAARTELDAQAARAQLLQAQWQARQQDYAGEQRSAQRAQR
FT                   GLRLVEARALRDSLARRAKEAGAALAAHQPELVEQDLQRYERSAALEREAQHRRHGELL
FT                   QLQGRLEQAGAQGLGEQLLLAEADLQRLARRRAEYMERAEALDLLWRLLDEHRTAATQR
FT                   LLEPLARRLQHYLALLFPGAQWRLDETLMPVALRRDGLEDGLEALSFGTREQLGVLARL
FT                   AYADLLAQAGRPALLVLDDALVHADDARRDLIKRALFDAASRHQVLLFTCHAEAWRDMG
FT                   VPLRELPSGG"
FT   misc_feature    complement(120870..120893)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             complement(120983..122104)
FT                   /transl_table=11
FT                   /locus_tag="BB3048"
FT                   /product="possible exonuclease"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2633"
FT                   /db_xref="GOA:Q7WI08"
FT                   /db_xref="InterPro:IPR014577"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI08"
FT                   /protein_id="CAE33540.1"
FT                   /translation="MTRFIHTADWQIGRQYGQFDSDDAAVLAEARLEAVARIAAQASEL
FT                   AVDAVLVAGDVFDTQSVSDRTIRRLFGAMQAYEGPWVLIAGNHDAALADSVWSRARRLE
FT                   CIGTNVHVPQGTAAVELPQAGLAVLAAPLTQRHTYDDVTAAFDTMDSAAGLVRVGLAHG
FT                   SVADRLPEQADAANPIAPDRAQRARLDYLALGDWHGCLRIDERTWYAGTPEPDRFRGNT
FT                   PGYALLVEVASPGAPPQVRQLEVGKYRWSHWVERLDLASDAEDLGHRLAGLQAGDVLRL
FT                   ELHGALSLARWDALRRDVERAAARVRALVADSAGLVLEPDAADLAALSVDGYVGAAAAR
FT                   LQAMQGDGAQAAAARVALRLLLQYQRELAEGAS"
FT   misc_feature    complement(121505..122101)
FT                   /note="HMMPfam hit to PF00149, DE Calcineurin-like
FT                   phosphoesterase, score 2.1e-13"
FT   CDS             complement(122181..123485)
FT                   /transl_table=11
FT                   /gene="dadA"
FT                   /gene_synonym="dadR"
FT                   /locus_tag="BB3049"
FT                   /product="D-amino acid dehydrogenase small subunit"
FT                   /EC_number="1.4.99.1"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2634"
FT                   /db_xref="GOA:Q7WI07"
FT                   /db_xref="InterPro:IPR006076"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WI07"
FT                   /protein_id="CAE33541.1"
FT                   /translation="MHVIVLGSGVIGTTTAYYLARQGAQVTVLERRAGPADETSYGNAG
FT                   QVSPGYSTPWAAPGIPLKALKWMFQKHAPLAIRADGSFYQWRWLAAMLANCSAGRYSVN
FT                   KERMLRLAEYSRDCLRTLRADTGIQYEQRTQGTLQLFRTAAQMEAARRDIAVLEECGVP
FT                   YELLDRNRLPTAEPALARALDKLAGGLRLPNDETGDCRRFTLQLADKAKALGVQFRFNQ
FT                   QVEGLDVRGGQVAGVRVGGEQLAADRYVAAFGSYTRGFLRPLGLDLPVYPVKGYSLTIP
FT                   MTDESAAPVSTILDETYKVAVTRFDQRIRVGGMAELAGFDLRLKEARRKTLELVVNDLF
FT                   PGSGAVEQAEFWTGLRPMTPDSTPIIGATKYGNLFLNTGHGTLGWTMACGSGQLVADQV
FT                   CGRQPAIRADDLALSRYGAGGQAGGGVARAQHNAA"
FT   misc_feature    complement(122286..123485)
FT                   /note="HMMPfam hit to PF01266, DE FAD dependent
FT                   oxidoreductase, score 0.0012"
FT   CDS             123621..124088
FT                   /transl_table=11
FT                   /gene="lrp"
FT                   /locus_tag="BB3050"
FT                   /product="leucine-responsive regulatory protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2635"
FT                   /db_xref="GOA:Q7WI06"
FT                   /db_xref="InterPro:IPR019888"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI06"
FT                   /protein_id="CAE33542.1"
FT                   /translation="MRELDRIDRKILDILQREGRISITELAEKISLSATPCSERVRRLE
FT                   REGVITGYHARINPAALGKTLLVFLEIRLSAKSGDVFDKVKQELLYVPEVMECHLVSGD
FT                   FDYLVKARLSEMNEYRRLLGEILKRLPASAESHSYVVMEEIKETLYLPVDR"
FT   misc_feature    123621..123632
FT                   /note="PS00228 Tubulin-beta mRNA autoregulation signal."
FT   misc_feature    123702..124013
FT                   /note="HMMPfam hit to PF01037, DE AsnC family, score
FT                   8.3e-44"
FT   CDS             124160..124873
FT                   /transl_table=11
FT                   /locus_tag="BB3051"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2636"
FT                   /db_xref="InterPro:IPR007462"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI05"
FT                   /protein_id="CAE33543.1"
FT                   /translation="MPAVRARRRGAGASSMSRLYRYFFRGLITVLPIALTLYLLFIFLA
FT                   WTEALALTLLRPFIGSFYIPGMGLALGILGILAIGYLVSKQRVQRWLLLLEMPFTNLPV
FT                   VKSIYSSLKSFADYFSPSAKTSSQQVVILRMPGNPLELVGLVTRRTLEGLPDGFTQGDR
FT                   VAVYLPMGYMIGGYTVFVPTEWVHPIQMSVEEAMRSSLIAWMARAENGAASGTVAAPPA
FT                   PPAPPAPPAAGGPQA"
FT   misc_feature    join(124229..124297,124340..124408)
FT                   /note="2 probable transmembrane helices predicted for
FT                   BB3051 by TMHMM2.0 at aa 24-46 and 61-83"
FT   CDS             125002..126147
FT                   /transl_table=11
FT                   /locus_tag="BB3052"
FT                   /product="putative lipoprotein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2637"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI04"
FT                   /protein_id="CAE33544.1"
FT                   /translation="MSTAAPVPGGILIACAAAAADASQQALLQYVQGLGLADAVTLSCI
FT                   RRGETAALSMTLAPAFQARHAPGHDTTGIAASLGLRPEHDSGDLEREILLAILASPVAF
FT                   PLPDAAELASAVRIRRHIVQAARRTALAFDTEQAERPQDDWVYDEQRGFTVLPGRPLVE
FT                   ALRKATQPDESGRLYSFSCYRATEYVTVLGIAQELQACNPELAARLQRQWETRAVMSGL
FT                   FHDTFLREYGSLQDPLPPRYYVPGDRLWFRNPDEHSSNVEGYEGSWVFYLGSGLFNNFW
FT                   KRDQPYTLAGKCVEIYHWRHGARRNEAGKLIIDESIVEARVHATMADPQATARVLERMV
FT                   RIRDPQGIYAEGGCIDATRECARWVGPGHTDIVLPDFPRPA"
FT   misc_feature    125002..125058
FT                   /note="Signal peptide predicted for BB3052 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.998) with cleavage site
FT                   probability 0.700 between residues 19 and 20"
FT   misc_feature    125014..125046
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(126149..127879)
FT                   /transl_table=11
FT                   /locus_tag="BB3053"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2638"
FT                   /db_xref="GOA:Q7WI03"
FT                   /db_xref="InterPro:IPR014597"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI03"
FT                   /protein_id="CAE33545.1"
FT                   /translation="MKMRMHAMAAAIALIGTQAAWAGEPEARKWVDSEFQPSSLSKDQQ
FT                   MAEMKWFIDAAEKLKAKGVSEINVVSETITTHEYEAKTLARAFTEITGIKVNHDLIQEG
FT                   DVVEKLQTSMQSGKSIYDGWISDSDLIGTHYRYGAILPLSDYISGAGKEYTNPGLDLKD
FT                   FIGTKFTTAPDGKLYQLPDQQFANVYWFRADWFARKDLQDKFKAKYGYELGVPTNWSAY
FT                   EDIAEFFSNDVKELDGKRVYGHMDYGKKDPSLGWRFTDAWLSMAGAADKGLPNGMPVDE
FT                   WGIRVADDKCTPVGASVARGGATNSPAAVYALTKYVDWMKKYAPQQATGMTFSESGPVP
FT                   AQGQIAQQIFWYTAFTADMTKKGLPVVNEDGTPKWRMAPSPYGPYWKDGMQNGYQDVGS
FT                   WTFFKSTDANRLAGAWLYAQFVTSKTVSLKKSITGLTFIRDSDINSEFFTKNAANYGGL
FT                   VEFYRSPARVAWTPTGNNVPDYPKLAQLWWKNVATAVTGEKTPQQAMDTLANEMDQVLA
FT                   RLERAGMAQCAPKLNPKSDPAKWLSDQHAPWKKLANEKPQGQTIAYEKLLQAWKEGKVR
FT                   "
FT   misc_feature    complement(126362..127663)
FT                   /note="HMMPfam hit to PF01547, DE Bacterial extracellular
FT                   solute-binding protein, score 0.002"
FT   misc_feature    complement(126626..126661)
FT                   /note="PS00213 Lipocalin signature."
FT   misc_feature    complement(127814..127879)
FT                   /note="Signal peptide predicted for BB3053 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.998 between residues 22 and 23"
FT   CDS             complement(127997..128305)
FT                   /transl_table=11
FT                   /locus_tag="BB3054"
FT                   /product="putative integral membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2639"
FT                   /db_xref="InterPro:IPR018678"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI02"
FT                   /protein_id="CAE33546.1"
FT                   /translation="MFGWMVWTTPVAVFFACIALMLAGMTIWELRSPTRLRKGFLPIAT
FT                   TRGDRLFIGLMIAAWINLAYVGLGSKAMEWFALDQPPTVWIGFVLSMVVLALVMRKG"
FT   misc_feature    complement(join(128006..128059,128102..128155,
FT                   128222..128290))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BB3054 by TMHMM2.0 at aa 6-28, 51-68 and 83-100"
FT   CDS             complement(128318..129130)
FT                   /transl_table=11
FT                   /locus_tag="BB3055"
FT                   /product="putative ABC transport protein, inner membrane
FT                   component"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2640"
FT                   /db_xref="GOA:Q7WI01"
FT                   /db_xref="InterPro:IPR000515"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI01"
FT                   /protein_id="CAE33547.1"
FT                   /translation="MAERRSSWRGIFLALYLLFAVLPLYWMVNMSFKTNTEILGSLTLW
FT                   PSDFTVEHYRTIFTDPAWYSGYINSLIYVLINTVISLAVALPAAYAFSRYRFIGDKHVF
FT                   FWLLTNRMTPPAVFLLPFFQLYTSLGLMDTHLAVALAHLVFNVPLAVWILEGFMSGVPR
FT                   EIDETAYVDGYSFPRFFLTIFLPLIKAGVGVAAFFCFMFSWVELLLARTLTSVNAKPIV
FT                   ATMTRTVSASGMDWGVLAAAGVLTIVPGAIVIWFVRHYIAKGFAMGRV"
FT   misc_feature    complement(join(128360..128428,128528..128596,
FT                   128657..128725,128753..128821,128855..128923,
FT                   129044..129112))
FT                   /note="6 probable transmembrane helices predicted for
FT                   BB3055 by TMHMM2.0 at aa 7-29, 70-92, 104-126, 136-158,
FT                   179-201 and 235-257"
FT   misc_feature    complement(128453..128662)
FT                   /note="HMMPfam hit to PF00528, DE Binding-protein-dependent
FT                   transport systems inner membrane component, score 0.012"
FT   misc_feature    complement(128573..128659)
FT                   /note="PS00402 Binding-protein-dependent transport systems
FT                   inner membrane comp. sign."
FT   CDS             complement(129123..130013)
FT                   /transl_table=11
FT                   /locus_tag="BB3056"
FT                   /product="putative ABC transport protein, inner membrane
FT                   component"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2641"
FT                   /db_xref="GOA:Q7WI00"
FT                   /db_xref="InterPro:IPR000515"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WI00"
FT                   /protein_id="CAE33548.1"
FT                   /translation="MKPIDHRAWLLVLPVVLCVAFSAILPLMTIVNYSVQDIIAPDRRV
FT                   FVGTEWFAAVLQDEELHGALWRQIGFSLAVLLIEIPLGILLALAMPASGWRASAVLVVI
FT                   ALSLLIPWNVVGTIWQVFGRTDIGLLGAALAALGLDYNYTGDALDAWLTVLVMDVWHWT
FT                   PLVALLCYAGLRAIPDAYYQAARIDGASAFAVFRYIQLPKLRGVLMIAVLLRFMDSFMI
FT                   YTEPFVLTGGGPGNATTFLSQYLTQKAVGQFDLGPAAAFSIVYFLIILLLCFVLYNWMQ
FT                   RAGTAGGLDEESRHG"
FT   misc_feature    complement(join(129183..129251,129327..129395,
FT                   129498..129566,129648..129716,129750..129818,
FT                   129921..129989))
FT                   /note="6 probable transmembrane helices predicted for
FT                   BB3056 by TMHMM2.0 at aa 9-31, 66-88, 100-122, 150-172,
FT                   207-229 and 255-277"
FT   misc_feature    complement(129276..129497)
FT                   /note="HMMPfam hit to PF00528, DE Binding-protein-dependent
FT                   transport systems inner membrane component, score 3.1e-10"
FT   misc_feature    complement(129408..129494)
FT                   /note="PS00402 Binding-protein-dependent transport systems
FT                   inner membrane comp. sign."
FT   misc_feature    complement(129948..130013)
FT                   /note="Signal peptide predicted for BB3056 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.901) with cleavage site
FT                   probability 0.779 between residues 22 and 23"
FT   CDS             complement(130010..131098)
FT                   /transl_table=11
FT                   /locus_tag="BB3057"
FT                   /product="probable ATP-binding ABC transporter protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2642"
FT                   /db_xref="GOA:Q7WHZ9"
FT                   /db_xref="HSSP:1G29"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHZ9"
FT                   /protein_id="CAE33549.1"
FT                   /translation="MASIELDLAHAYGPDPRGEDDYALLPLRFTFEDGGAYALLGPSGC
FT                   GKTTLLNCVSGLLRPSQGRVLFDGQDVTGRTPQQRNIAQVFQFPVVYDTMTVADNLAFP
FT                   LRNRGVPQAHIRERVGRIAEMLELSAVLERRASGLTADAKQKISLGRGLVRSDVSAILF
FT                   DEPLTVIDPHLKWELRRKLKEIHHEFKLTLIYVTHDQTEALTFAERVMVMSRGRAVQVG
FT                   TPDDLFERPAHTFVGHFIGSPGMNFLPAEWRDGALRIGSQRLEGLTAGQAEALAQGGPV
FT                   KLGVRPEYLRLVAPHTPGALPVRVARVQDVGTYALLGAEFESNALRARLPLDAALPGAG
FT                   DTVWLAVLNRHTCFYRDEELIR"
FT   misc_feature    complement(130451..130999)
FT                   /note="HMMPfam hit to PF00005, DE ABC transporter, score
FT                   2.8e-37"
FT   misc_feature    complement(130955..130978)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             complement(131098..132180)
FT                   /transl_table=11
FT                   /locus_tag="BB3058"
FT                   /product="probable ATP-binding ABC transporter protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2642A"
FT                   /db_xref="GOA:Q7WHZ8"
FT                   /db_xref="HSSP:1G29"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHZ8"
FT                   /protein_id="CAE33550.1"
FT                   /translation="MQLVLDGIQLRAGSQVHLYPLSLQPAPGAMTVLLGATLAGKTSVM
FT                   RIMAGLDRPTEGKVLVDGADVTGVPVRQRNVAMVYQQFINYPSMRVADNIASPLRLRGA
FT                   ADIPARVRAMAERLHIEHLLERYPSELSGGQQQRVALARALVKDAPLVLLDEPLVNLDY
FT                   KLREALREELAGLFAQGRSTVVYATTEPAEALLLGGHTAVLDAGRLLQYGPTAEVFHRP
FT                   NSIRVARAFSDPPMNLFPARRANGGFMLASGVMVPCALPPPETGDDALTAGLRAGVFRT
FT                   EARAADVALPGVVELAEISGSDSFVHVRTPAGPVVAQLTGVHRYPLDSRLTLHFDPADS
FT                   YAFGPDGALLAAPRRAGEER"
FT   misc_feature    complement(131560..132099)
FT                   /note="HMMPfam hit to PF00005, DE ABC transporter, score
FT                   5.7e-50"
FT   misc_feature    complement(131746..131790)
FT                   /note="PS00211 ABC transporters family signature."
FT   misc_feature    complement(132055..132078)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             132285..133094
FT                   /transl_table=11
FT                   /gene="glpR"
FT                   /locus_tag="BB3059"
FT                   /product="glycerol-3-phosphate regulon repressor protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2643"
FT                   /db_xref="GOA:Q7WHZ7"
FT                   /db_xref="InterPro:IPR018356"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHZ7"
FT                   /protein_id="CAE33551.1"
FT                   /translation="MLFYDANMTLNPRQSALVELVRTQGSATIEALARHFDVTLQTVRR
FT                   DVNLLSEAGMLSRFHGGVRIESSTIENIAYRKRQGLHAEGKRRIAEAVARAVPDGCSLL
FT                   INIGTTTEAIARALLRHRGLRVITNNLHVADILSDNPDCEVIVAGGVVRSRDRGIVGEA
FT                   TLDFIRQFKVDIGLIGISGIEADGTLRDYDFREVRVARAIIEQSREVWLAADSSKFQRQ
FT                   AMVELVHVSRIHRFFTDAQPQESLAQVLQDAGVRCDVAAQSAGAATA"
FT   misc_feature    132321..132425
FT                   /note="PS00894 Bacterial regulatory proteins, deoR family
FT                   signature."
FT   misc_feature    132321..133001
FT                   /note="HMMPfam hit to PF00455, DE Bacterial regulatory
FT                   proteins, deoR family, score 7.2e-80"
FT   CDS             133134..134738
FT                   /transl_table=11
FT                   /locus_tag="BB3060"
FT                   /product="putative glycerol-3-phosphate dehydrogenase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2644"
FT                   /db_xref="GOA:Q7WHZ6"
FT                   /db_xref="InterPro:IPR000447"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHZ6"
FT                   /protein_id="CAE33552.1"
FT                   /translation="MTAPTLAPIDPPARAQLLADLQGAPDWDVIVIGGGATGLGTAVDA
FT                   AARGYRTLLVEAADFAKGTSSKATKLVHGGVRYLAQGNISLVREALHERGLLNRNAPHL
FT                   VWPLGFVVPAYSLLDQPFYGVGLKMYDMLAGKLNLAPSRWLSRGETLRHAATVAERVNG
FT                   RALRGGILYYDGQFDDARLAIALMRTLYDLGGVALNYARAVGLTRTDGRVDGVTVADAL
FT                   GELRVTLRAKCVVNATGVWVDAVRRMDDPAAQTMVAPSQGVHLTLPRDFLPGEDAILIP
FT                   KTDDGRVLFVVPWNGHTIVGTTDTPRTDLPLDPQAGQNEIDFILATAARYLSRKPTRAD
FT                   VTSVWAGLRPLVKATGEASTKSLSREHTIVVSKGGLVTVTGGKWTTYRKMAQDVVDTAI
FT                   QHKLLAAAPCRTSELPLHGAPTDGQPNGAPHGTPDSYYGTDLATLRALPGADRMLVKAS
FT                   ALTEAHVRYAARHELARTVEDVLARRNRALFLDAEAALLAAPEVARILAQELGHDEAWS
FT                   RATLAEFEAVAAHYRLA"
FT   misc_feature    133212..134318
FT                   /note="HMMPfam hit to PF01266, DE FAD dependent
FT                   oxidoreductase, score 3.2e-88"
FT   misc_feature    133569..133616
FT                   /note="PS00038 Myc-type, 'helix-loop-helix' dimerization
FT                   domain signature."
FT   misc_feature    134274..134306
FT                   /note="PS00978 FAD-dependent glycerol-3-phosphate
FT                   dehydrogenase signature 2."
FT   CDS             134819..135559
FT                   /transl_table=11
FT                   /locus_tag="BB3061"
FT                   /product="putative IclR-family regulatory protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2645"
FT                   /db_xref="GOA:Q7WHZ5"
FT                   /db_xref="InterPro:IPR005471"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHZ5"
FT                   /protein_id="CAE33553.1"
FT                   /translation="MDTTTLKGLTVLEALVRSGESRSAGELAQELGLVRSNVHRTLQTL
FT                   AHAGYVEAIADSAKYRPTLRLWELGNVVVQRFDIRKQAYPTMQALAAHTGETILLAVRQ
FT                   RLEVCFLDKIQTEKPVGTFVLLGARAPVHCTAPGKAILSRCSHSELLALPEKFERYTAK
FT                   TITTRDALIAELAIARERGYAINTSEWREGVNSLGVPITAPGGEALGAISVTGPDTRVT
FT                   LKKLDGYAPVLVEAARELSRRIGG"
FT   misc_feature    134996..135547
FT                   /note="HMMPfam hit to PF01614, DE Bacterial transcriptional
FT                   regulator, score 2.3e-41"
FT   CDS             complement(135567..136436)
FT                   /transl_table=11
FT                   /locus_tag="BB3062"
FT                   /product="putative oxidoreductase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2646"
FT                   /db_xref="GOA:Q7WHZ4"
FT                   /db_xref="HSSP:1FK8"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHZ4"
FT                   /protein_id="CAE33554.1"
FT                   /translation="MMATPAGTEDEAGQRARRTYVVSGSASGIGAATRRALEAAGATVI
FT                   GIDLRNAEIEIDLSDAGQVGLVGARLAAQGVSVVDGVLTCAGVSGKTGSPEAIVAVNYF
FT                   GTTGVLEQLHPFLRRSGHGRAVALSSIAMLRQAHAGLYAACLDGRRADALDLARAGGLH
FT                   PRTAYETTKRAVSAWIRHQALQDRWVRHGVLLNAVAPGIIDTPLTRHIVQDRQALDMAL
FT                   ARAPQALGVGRPEHVAALAAFLAGPANGFITGQTIFVDGGHEAQVGAGLPALSAQAQAD
FT                   YDALASRA"
FT   misc_feature    complement(135648..136391)
FT                   /note="HMMPfam hit to PF00106, DE short chain
FT                   dehydrogenase, score 5.6e-12"
FT   CDS             complement(136433..137452)
FT                   /transl_table=11
FT                   /locus_tag="BB3063"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2647"
FT                   /db_xref="GOA:Q7WHZ3"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHZ3"
FT                   /protein_id="CAE33555.1"
FT                   /translation="MSGAAPTTREETGKMKTSMHFVRTWCGALCALVVLAGASLPARAE
FT                   YPTRSVTLIVPFPAGGSVDMLARLFAAHVGEPFKDKVVVINRPGASGVVGETAMARAEP
FT                   DGYTIMFQGAPAAINAEIYKQPLYDAKDLQPVGLIMTAPFVVATYPESEIKTLADIKTV
FT                   AAGMPNGLTTAEAGISTRLVAEMYRLITKDKLYLVPYNGGPAAAMSLVRHETGLYFSDL
FT                   TSVTPYILSGQFRPLAVTSAKRVKDHPTIPTTAEAGVPEFTPQTWFGVFTRTGTPPEIV
FT                   QALNQAVDGFLRNPAVIQKIEQVGGTPTHMSVAQFEDYYGRQRLLWRDVIKRAEIPLQ"
FT   misc_feature    complement(136445..137257)
FT                   /note="HMMPfam hit to PF03401, DE Uncharacterized protein
FT                   family, UPF0065, score 6.1e-48"
FT   misc_feature    complement(137321..137452)
FT                   /note="Signal peptide predicted for BB3063 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.955) with cleavage site
FT                   probability 0.947 between residues 44 and 45"
FT   CDS             complement(137449..138831)
FT                   /transl_table=11
FT                   /locus_tag="BB3064"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2648"
FT                   /db_xref="GOA:Q7WHZ2"
FT                   /db_xref="HSSP:1D4D"
FT                   /db_xref="InterPro:IPR003953"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHZ2"
FT                   /protein_id="CAE33556.1"
FT                   /translation="MSAQEVKEVDVVVVGGGLAGHSAAIEVSKAGKSVAVLEKMPDIGG
FT                   STVLSGGSFAFAGTPEQAGQGIDDSPERLRRDLLACAAREQARELIDVYVAHQLDAYRL
FT                   LRHLGVVFDPIQFSSNQSVPRSHPTSPARVMALMNEHLRQQYGVAVQTSAPVSALHRDP
FT                   ASRRIVAVTARHADRAVEYRARQGVILASGGFSQSPELMSMLAPHLENVLLTGGAGNQG
FT                   DGLKMAWAHGAAIADIDALVPTFGALQEAVPSEPNTILLAYYRGGIVVNSAGERFVDES
FT                   KSYKAIGKASMDQAGARGFQIFDQKVMDLSVRSPKTLDFQRAFDLGRVTAADTIVELAE
FT                   RIGIDPQALARTVSEYNDGIRQQRDRFGRRHLSNQVGEAFPLEHPRYYAYATVPYMATT
FT                   YAGIKVDRRMRVVDVWGKPIDGLYAAGEIIGGAHGRGYMTGASLGKALIFGRVAAWSAI
FT                   SG"
FT   CDS             complement(138864..139724)
FT                   /transl_table=11
FT                   /locus_tag="BB3065"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2649"
FT                   /db_xref="GOA:Q7WHZ1"
FT                   /db_xref="InterPro:IPR006992"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHZ1"
FT                   /protein_id="CAE33557.1"
FT                   /translation="MIVDMRLRPPIPGFARSTLYQAGPKTSHPDFPVEPSVGQCSLPLL
FT                   ISEMDAAGVAVGVVPGRYSMEPFGIVSNDELATLFADHPGRFVGFMGLDLGWPMQRMLD
FT                   EIDARVGTPGFRGVALEPTISADASFCGMNDKRLYPIYEACVKHGVPVSVTLSAVLQAF
FT                   TKRPYEHSNPVQAYQVAIDFPSLDIVIAHAAYPWVMEMIGVCLTCPNVWLSPDLYLTNV
FT                   FPGAQEYAKAAATYLPRRTLFGTGYPAKPFKPMIDAYAAWGWPQDVVAAILGGNAARLL
FT                   RLADQ"
FT   CDS             complement(139974..140666)
FT                   /transl_table=11
FT                   /locus_tag="BB3066"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2650"
FT                   /db_xref="InterPro:IPR002818"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHZ0"
FT                   /protein_id="CAE33558.1"
FT                   /translation="MKILMVLTSHDQLGDTGRKTGFWLEEFAAPYYVFVDTGAHVTLAS
FT                   PAGGQPPLDPKSDEPDAQTEATRRFAADPQAQQALAHTAKLADMRAADFDALFYPGGHG
FT                   PLWDLAESAHSTALIETFLAGGKPVAAVCHAPGVLRHARAADGAPLVAGRQVTGFSNTE
FT                   EAAVQLTEVVPFLVEDELVGLGARYSKAEDWHAYVVNDGLLITGQNPASSERAARAMLT
FT                   ALDNGRGG"
FT   misc_feature    complement(139992..140603)
FT                   /note="HMMPfam hit to PF01965, DE DJ-1/PfpI family, score
FT                   1.7e-24"
FT   CDS             140748..141629
FT                   /transl_table=11
FT                   /locus_tag="BB3067"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2651"
FT                   /db_xref="InterPro:IPR008551"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHY9"
FT                   /protein_id="CAE33559.1"
FT                   /translation="MGKTQEFLRLRRIIALSSLLASRKSAMCLAVLALHAIPGLPVLIA
FT                   ANRDEFHARPTAEATRWPGSPAIYAGRDLQAGGTWLGVSDQGRYAVVTNFRDPRNIQPD
FT                   APSRGALVEAFLRGAASAQEYLRDVHARGARYNGFNLIVGDAGGAWYCSNRDGAPQRLA
FT                   AGVYALSNHLLDTPWPKLARTKAAFERIIAATPQPDLAALYAALADPTPAADHELPATG
FT                   LALERERLLSSPFIVSPDYGTRSACILALHDDGRGELHERRFRPDGAIAGQADLDFPWR
FT                   AARAELHRASCV"
FT   misc_feature    140748..140855
FT                   /note="Signal peptide predicted for BB3067 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.974) with cleavage site
FT                   probability 0.478 between residues 36 and 37"
FT   misc_feature    141387..141419
FT                   /note="PS00639 Eukaryotic thiol (cysteine) proteases
FT                   histidine active site."
FT   CDS             141688..142125
FT                   /transl_table=11
FT                   /locus_tag="BB3068"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2652"
FT                   /db_xref="GOA:Q7WHY8"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHY8"
FT                   /protein_id="CAE33560.1"
FT                   /translation="MNKRHERAWMAAALAAGSIALGGAVQAQGALPAVQQQGSVQFVTG
FT                   GVGLDESEAMKAASKDYPLALTFAARGDGRAGLYLADVAVQILDRTGKPVLDAKADGPY
FT                   LLAKLPAGTYRVKATSGGVEQTRQVSVRPGSTARAVFEWKD"
FT   misc_feature    141688..141768
FT                   /note="Signal peptide predicted for BB3068 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.910 between residues 27 and 28"
FT   CDS             complement(142216..143187)
FT                   /transl_table=11
FT                   /locus_tag="BB3069"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2653"
FT                   /db_xref="GOA:Q7WHY7"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHY7"
FT                   /protein_id="CAE33561.1"
FT                   /translation="MRVMQKGLMAALLLGSALASAAAADSFPQRPVTIVVPFTPGGAVD
FT                   IVARTVAAGLSEQWSQSVVVENKAGAGGAIGIQSVARAKPDGYTLLLGSVGPVTVNPSL
FT                   GPVGYDVAKELAPVVLLAKTPAVLVTLPSAPVDDVAQFVKQAKAQPGGLNYGSAGTGNI
FT                   THLVSEYFLSSAGLAANHIPYKGSAPAITDMLGGRLDFMFDVVPTAQPLIKSGKYKALA
FT                   VTTIKRSDVLPDVPTLDELGYKGFDVSSWFSLMAPAGTPDAVIGQINAAVNEVLRSDAS
FT                   RERLAAIGAYSAGGTPEQLGEFVRSETARWKKLIDERGIRAN"
FT   misc_feature    complement(142228..143049)
FT                   /note="HMMPfam hit to PF03401, DE Uncharacterized protein
FT                   family, UPF0065, score 3e-117"
FT   misc_feature    complement(143116..143187)
FT                   /note="Signal peptide predicted for BB3069 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.827 between residues 24 and 25"
FT   CDS             complement(143226..144170)
FT                   /transl_table=11
FT                   /locus_tag="BB3070"
FT                   /product="probable dihydrodipicolinate synthase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2654"
FT                   /db_xref="GOA:Q7WHY6"
FT                   /db_xref="InterPro:IPR019775"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHY6"
FT                   /protein_id="CAE33562.1"
FT                   /translation="MAARFPGYVPAGVIPAALMPFNEDLSIDEKSLRAHIRDLASVRGI
FT                   SALCVNGVSQEIPGLTLDEQRRALDVMADEVGDQVPLMHGVYAHGPLDAARIARQAEAG
FT                   GASCLLVFPPAVFARGAAMLPEMTLGHYKAIADATDLPLIVFQYETSTGMAHPLDTLVK
FT                   LAEAVPSVMAIKDRSNNPIEHERNIRVLQSLARPVNVLTTHSAWLMPSLVLGCNGILSG
FT                   SGSVHADLHVALWEAVQANDLAAARAINDQIYPMASCFYSAPTLDMHTRMKEALVMLGR
FT                   LPSGRVRLPWVDLSDAERARVRAALVQAGRLPA"
FT   misc_feature    complement(143241..144146)
FT                   /note="HMMPfam hit to PF00701, DE Dihydrodipicolinate
FT                   synthetase family, score 4.5e-11"
FT   misc_feature    complement(143460..143504)
FT                   /note="PS00678 Trp-Asp (WD) repeats signature."
FT   CDS             144389..145075
FT                   /transl_table=11
FT                   /locus_tag="BB3071"
FT                   /product="putative IclR-family regulatory protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2655"
FT                   /db_xref="GOA:Q7WHY5"
FT                   /db_xref="InterPro:IPR005471"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHY5"
FT                   /protein_id="CAE33563.1"
FT                   /translation="MTGLPHPTVLRLLRHLTGLGMVAWDPATKIYRLGTLTFELGLAAA
FT                   EHCDIRGLCGDSLDRLQAETQDTCYLTMRSGFDAVCIDRREGASPIRVLTLDIGSRRPL
FT                   GVGAAGLAILDCLPEEEAETVIQASESKLDRYNRMSTDIMRMLLQETRERGYAVCGNWV
FT                   TLGVTAVAVPICIEDGRPIGSLSVSAVSHRMPADRWPGIARALRAEMHEIHRKLQGPSS
FT                   RPGYGG"
FT   misc_feature    144479..145036
FT                   /note="HMMPfam hit to PF01614, DE Bacterial transcriptional
FT                   regulator, score 1.5e-18"
FT   CDS             complement(145255..145650)
FT                   /transl_table=11
FT                   /locus_tag="BB3072"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2656"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHY4"
FT                   /protein_id="CAE33564.1"
FT                   /translation="MAPQRTSMNATAAFLLAAALLPLVPAIAAKAGGRRYDNNDPRPWL
FT                   AGQAGWRARANSAQANTFEALPFFFAAVLYALHSQAPAATLHVLMGAWLVARLVYVALY
FT                   IGGRGNLRSLIWLAALLVNVAILLAGS"
FT   misc_feature    complement(join(145261..145314,145333..145401,
FT                   145564..145632))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BB3072 by TMHMM2.0 at aa 7-29, 84-106 and 113-130"
FT   misc_feature    complement(145567..145650)
FT                   /note="Signal peptide predicted for BB3072 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.944 between residues 28 and 29"
FT   CDS             complement(145736..146428)
FT                   /transl_table=11
FT                   /locus_tag="BB3073"
FT                   /product="putative integral membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2657"
FT                   /db_xref="InterPro:IPR014509"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHY3"
FT                   /protein_id="CAE33565.1"
FT                   /translation="MTEARAGLFARRRYLPALAVLYAALWLALAIEPHDRSDWLLENAL
FT                   VLGFGVALYATRRWFVFSRVSYTLIFLYLCLHAVGAHYTYSLVPYDAWWQRLTGHSLDQ
FT                   LLGWERNQFDRLVHFSYGLLLAYPIREIFLRVVEVRGFWGYLLPLDVALSTSALYELIE
FT                   WGAAEFFGGELGVAYLGTQGDIWDAQKDMALAGLGALIAMLLTALFNRGARRDPARDWV
FT                   DRMKPGHT"
FT   misc_feature    complement(join(145802..145855,146165..146224,
FT                   146243..146311,146339..146392))
FT                   /note="4 probable transmembrane helices predicted for
FT                   BB3073 by TMHMM2.0 at aa 13-30, 40-62, 69-88 and 192-209"
FT   CDS             complement(146421..146837)
FT                   /transl_table=11
FT                   /locus_tag="BB3074"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2658"
FT                   /db_xref="GOA:Q7WHY2"
FT                   /db_xref="InterPro:IPR000352"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHY2"
FT                   /protein_id="CAE33566.1"
FT                   /translation="MLHVLGSLYLDERELDFDMIRAQGAGGQNVNKVSSAIHLRFDVRA
FT                   SSLPDSVKETVLALADRRISSDGVIVIKAQTHRSQEKNRADAVERLLALLREALRPVRP
FT                   RRATRPTLGSQRRRVQRKVQHGETKRLRGRVRDD"
FT   misc_feature    complement(146442..146837)
FT                   /note="HMMPfam hit to PF00472, DE Peptidyl-tRNA hydrolase
FT                   domain, score 1.8e-13"
FT   misc_feature    complement(146727..146777)
FT                   /note="PS00745 Prokaryotic-type class I peptide chain
FT                   release factors signature."
FT   CDS             146948..147580
FT                   /transl_table=11
FT                   /locus_tag="BB3075"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2659"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHY1"
FT                   /protein_id="CAE33567.1"
FT                   /translation="MAYSVKELFKTLQGEGAQAGRAAVFCRFAGCNLWTGRESDRAGAA
FT                   CTFCDTDFVGTDGQGGGKFADAAGLADAIAACWGEHPADRYVVFTGGEPLLQLDEALLQ
FT                   AVHAQGFTVAIETNGTLPPPPGIDWICVSPKGRAPVVVERGHELKLVFPQADARPEAFA
FT                   HLAFEHFFLQPMDGPARAAHTAQAVQYCLDHPQWRLSLQTHKYIGIP"
FT   CDS             147609..148052
FT                   /transl_table=11
FT                   /locus_tag="BB3076"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2660"
FT                   /db_xref="GOA:Q7WHY0"
FT                   /db_xref="InterPro:IPR007115"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHY0"
FT                   /protein_id="CAE33568.1"
FT                   /translation="MISVTRRLEFDAGHRIPDHNSQCRNLHGHRYVLEVTLSGDVVQAP
FT                   GASDNGMLMDFSEIKRIARTHIVDVWDHAFLVYEGDHAVRGFLDTLPDHKTVVLDRIPT
FT                   AENLASIIFATLAPHYHGHYGADLRLTRVRLYETPNCWADCGS"
FT   misc_feature    147609..148031
FT                   /note="HMMPfam hit to PF01242, DE 6-pyruvoyl
FT                   tetrahydropterin synthase, score 0.00011"
FT   CDS             complement(148074..149165)
FT                   /transl_table=11
FT                   /locus_tag="BB3077"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2661"
FT                   /db_xref="GOA:Q7WHX9"
FT                   /db_xref="InterPro:IPR006311"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHX9"
FT                   /protein_id="CAE33569.1"
FT                   /translation="MQRRRFLTAAAAGAGSAVLAAPAVAQEAPTIRWRMPSSFPRSLDT
FT                   VWGAAEAITARVSELTDGKFAIRAFPAGEIVPPLQVLDAVQNGTTECGHTAGFYYMGKE
FT                   PALVFDTGVPFGLTPRQHSAWVLQGGGQALIDELYAGFNAIAIPCGNTGAQMGGWFRKQ
FT                   MRTPDDFKGLRIRTPGLLSMVYQKLGAIPQQIAGSDIYPALEKGSLDAVEFVGPYDDEK
FT                   LGFAKVAQYYYGPGVMELGANLCLNVNRESWQSLPPRYQVALRAACAMAGEELLAKYDA
FT                   HNIPALKRLVGQGAKLQSWSPEIMAAMQKATREVLEEYAGKNPRFAKVLESWRAFRADQ
FT                   LLWASVNDGAAERYLLATRENGL"
FT   misc_feature    complement(148197..149063)
FT                   /note="HMMPfam hit to PF03480, DE Bacterial extracellular
FT                   solute-binding protein, family 7, score 8.7e-60"
FT   misc_feature    complement(149091..149165)
FT                   /note="Signal peptide predicted for BB3077 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.978 between residues 25 and 26"
FT   CDS             complement(149220..150011)
FT                   /transl_table=11
FT                   /locus_tag="BB3078"
FT                   /product="putative aldolase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2662"
FT                   /db_xref="GOA:Q7WHX8"
FT                   /db_xref="InterPro:IPR001303"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHX8"
FT                   /protein_id="CAE33570.1"
FT                   /translation="MMSSSYTVQDKDVLRARVDREIESRVSEPQWTRAQKMALACRMLA
FT                   EQGHWHGGLAGQITARGDEPGTYWTLPFGVGADEARASELILIDEDLNPLDGKSLPNPA
FT                   NRFHIWIYRHRPNVQCIVHTHPPAVSALSMVGEPLVVAHMDATPFYNDCAYLPQWPGLP
FT                   IGDNEGEVISAALGEKRAILLANHGLLTAGSSIEESAVMALWMEQAAMLQLRARAIGPV
FT                   KAVPGELAQESHDFLVKPKIQSLTFAYFARRVLRAAPDCLD"
FT   misc_feature    complement(149325..149909)
FT                   /note="HMMPfam hit to PF00596, DE Class II Aldolase and
FT                   Adducin N-terminal domain, score 6.4e-45"
FT   misc_feature    complement(149427..149459)
FT                   /note="PS00639 Eukaryotic thiol (cysteine) proteases
FT                   histidine active site."
FT   CDS             150156..150776
FT                   /transl_table=11
FT                   /locus_tag="BB3079"
FT                   /product="putative transcriptional regulatory protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2663"
FT                   /db_xref="GOA:Q7WHX7"
FT                   /db_xref="HSSP:1B0N"
FT                   /db_xref="InterPro:IPR014710"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHX7"
FT                   /protein_id="CAE33571.1"
FT                   /translation="MASCVLTHSPPPPMTAKSPPIPAPSPEQIGLRIRALRKRQKRTLA
FT                   WLSAQCGLDKGFLSRLERGEKSASVGTLHTVAGALGSSLSALLGEADPQTEIQIVRAAD
FT                   RHRMTTAPGPGEHIYEAITLGSSHSGLSVMVVEVGTHGAHTEAHHGGDELIFVLDGRIR
FT                   VHFGGHTVLLERDDSVRFPGYLPHSLSAEGRKLARALVVIASG"
FT   misc_feature    150252..150416
FT                   /note="HMMPfam hit to PF01381, DE Helix-turn-helix, score
FT                   6e-07"
FT   CDS             151025..151498
FT                   /transl_table=11
FT                   /locus_tag="BB3080"
FT                   /product="putative MarR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2664"
FT                   /db_xref="GOA:Q7WHX6"
FT                   /db_xref="InterPro:IPR000835"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHX6"
FT                   /protein_id="CAE33572.1"
FT                   /translation="MKTATDNRLMAMTANLMVLSRAYRSAADKALADFGLSQATAWPVI
FT                   LTGRLGDGVRQGALAEALGVEGPSLVRVLDQLVAAGLIERREDPQDRRARTLHLTPAGQ
FT                   SLREQVENVLVQLRRQLFQGIADADLETCLRVFDSLKSALGRESAAAREDYRP"
FT   misc_feature    151025..151102
FT                   /note="Signal peptide predicted for BB3080 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.926) with cleavage site
FT                   probability 0.898 between residues 26 and 27"
FT   misc_feature    151130..151444
FT                   /note="HMMPfam hit to PF01047, DE MarR family, score 2e-13"
FT   misc_feature    151229..151333
FT                   /note="PS01117 Bacterial regulatory proteins, marR family
FT                   signature."
FT   CDS             151495..153540
FT                   /transl_table=11
FT                   /locus_tag="BB3081"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2665"
FT                   /db_xref="InterPro:IPR006726"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHX5"
FT                   /protein_id="CAE33573.1"
FT                   /translation="MKLPTADEAVFSIKCYLGAMLALYLAYSIGLPRPFWAMTTAYVVA
FT                   QPWSGAVRSKAVYRLGGTFFGSAMTIYTVPRLANYPVLMTLAMVLWVGLCLYIAVLDRT
FT                   PRSYLFMLAGYTAAMIGFPSVTDPALVFDTALARVEEISLGIICATLVHSVVLPRGIGR
FT                   AMMGRLDATVRDARSWIQDVLNQRGAAQHARDRRALANDITQLRLLSTHVPFDTGNIRW
FT                   TANALRAMQEHITALTPAVSAVEDRLQALQAQGRALPPPAARVLADISAWMDDSAHATR
FT                   EQAVQLRAALTRLAPAIDRQSGWHDALLASLVARLRELVDSYDACLVLRQDIHAGLGGA
FT                   PTGRTRRLTRGAALHRDHGLALLSALAAALAISVCCLFWIGTAWTNGATAAMMAAIFSC
FT                   FFAAQDNPVPGIMQFLTYTIYSIPLSALYLLGIMPALHSFEMLALAIFPVAFVTGVYIA
FT                   RPTTTGKAMAVFFGLSGTLALQDTHAADLVSFVDTIVAQIIGVAVAAIIAAVFRTVSAE
FT                   WSARRIQAANWKELAALAGAGRAPARLDFTARMLDRIGLLQPRLALSKRRDDQLADDAL
FT                   QDLRVGKDIAELQRARRHLPMADPAIQPVLRTLAGLFRKRPGRLGGERPAELLQTIDRA
FT                   LYSVSNTPVAHAARERAVVALVGLRRAFFPEAAAYRPGRDVESPAS"
FT   misc_feature    join(151537..151605,151663..151716,151729..151797,
FT                   151816..151869,151897..151965,152569..152637,
FT                   152719..152787,152806..152865,152968..153036)
FT                   /note="9 probable transmembrane helices predicted for
FT                   BB3081 by TMHMM2.0 at aa 15-37, 57-74, 79-101, 108-125,
FT                   135-157, 359-381, 409-431, 438-457 and 492-514"
FT   CDS             153537..153749
FT                   /transl_table=11
FT                   /locus_tag="BB3082"
FT                   /product="putative membrane protein"
FT                   /db_xref="InterPro:IPR012451"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHX4"
FT                   /protein_id="CAE33574.1"
FT                   /translation="MIGEFNLYGVYFPWLLVLGVLTLGVAWIARRALARIGFYRLVWHP
FT                   ALFDLALFIVLLYGASLISPHIFQR"
FT   misc_feature    join(153564..153623,153657..153725)
FT                   /note="2 probable transmembrane helices predicted for
FT                   BB3082 by TMHMM2.0 at aa 10-29 and 41-63"
FT   CDS             153754..154647
FT                   /transl_table=11
FT                   /locus_tag="BB3083"
FT                   /product="putative HlyD family secretion protein"
FT                   /db_xref="GOA:Q7WHX3"
FT                   /db_xref="InterPro:IPR006143"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHX3"
FT                   /protein_id="CAE33575.1"
FT                   /translation="MKFPQSLRAAALGKFAVTAAVVAAAVYAGWQLWAHYELEPWTRDG
FT                   RVKAYVVQVAPDVSGLVTAVPVRDNQDVQAGDVLFEIDRARFQLACDQAQAALRAQQVA
FT                   HEQALRDVKRNRALGQLVAAEALEQSQARLQQIEAARAQAEVQLDTARLNLARSRVVAG
FT                   VAGRITNLDLRAGSYASAGKPVMALVDAGSFYVEGYFEETKLARIHEGDGVTVTLMGDS
FT                   RAIHGHVESIALGIADRDRSTGANLLPNVNPTFNWVRLAQRIPVRVRIDQVPAGVRLVA
FT                   GQTATVAIDQAGPRPS"
FT   misc_feature    153754..153837
FT                   /note="Signal peptide predicted for BB3083 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.995) with cleavage site
FT                   probability 0.411 between residues 28 and 29"
FT   misc_feature    153787..153855
FT                   /note="1 probable transmembrane helix predicted for BB3083
FT                   by TMHMM2.0 at aa 12-34"
FT   misc_feature    153901..154614
FT                   /note="HMMPfam hit to PF00529, DE HlyD family secretion
FT                   protein, score 2.6e-14"
FT   CDS             154675..156096
FT                   /transl_table=11
FT                   /locus_tag="BB3084"
FT                   /product="probable outer membrane efflux protein"
FT                   /db_xref="GOA:Q7WHX2"
FT                   /db_xref="InterPro:IPR010131"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHX2"
FT                   /protein_id="CAE33576.1"
FT                   /translation="MSIRSLLPLIPALALAGCAAVGPDYRLPEQAAAKRPAAAAPFVQA
FT                   REQAVYRQDELPPHWWRLYQDRQLDSLVEQALAANADLRVAAANLERAQAVTRQAQARQ
FT                   QPTVDVSAAPAFGHASGVQELQPGLRPQDSWSYSGGLGVSYQLDLFGQIRRAIEAAQDD
FT                   AQAAQAAYDAARVTVAAETARAYADLCAAGMQLDSARHSVQVQQQSVDAVQRLLAAGRG
FT                   TTLDVARARSQLEQLQAELPPFQAGQRTALYRLAALTGHAPAELPQSLLACVRPPRLAQ
FT                   AIPVGDGAALLRRRPDIRQAERSLAAATARIGVATADLYPKISLGLSGASAGPAALFGE
FT                   PGTFSWSVGPLISWTLPDTGAAQARIAQAEASTKGALARFDATVLNALRETESALVTYA
FT                   RQLDRDAALRAAREQGAQAAAQARQLFRLGKTDYLTVLDAERTLAGNESALAASQAQLA
FT                   GDQIAVFLALGGGWE"
FT   misc_feature    154675..154731
FT                   /note="Signal peptide predicted for BB3084 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.996) with cleavage site
FT                   probability 0.426 between residues 19 and 20"
FT   misc_feature    154696..154728
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    154879..155487
FT                   /note="HMMPfam hit to PF02321, DE Outer membrane efflux
FT                   protein, score 2e-34"
FT   misc_feature    155524..156087
FT                   /note="HMMPfam hit to PF02321, DE Outer membrane efflux
FT                   protein, score 9.1e-29"
FT   misc_feature    155740..155757
FT                   /note="PS00343 Gram-positive cocci surface proteins
FT                   'anchoring' hexapeptide."
FT   CDS             complement(156103..156807)
FT                   /transl_table=11
FT                   /locus_tag="BB3085"
FT                   /product="probable esterase"
FT                   /db_xref="GOA:Q7WHX1"
FT                   /db_xref="InterPro:IPR003140"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHX1"
FT                   /protein_id="CAE33577.1"
FT                   /translation="MVSSASIEILPNPDIPVRQLFILLHGAGGAPDDMAALARALRAAF
FT                   PASAVMIPEGFEPCDGGPRGRQWFALQGITDENRPERVARAMPALFDYVRAAQQRLGLL
FT                   QSDTALAGFSQGAIMALEAVIAHDGLAGRVLAFSGRYAQLPRSAPQYTTIHLLHGAADA
FT                   VMSVAHAQAAQERLDALHGDSTIDVATQVGHQLHPALIQRAIVRLQTCVPLRSWEEALG
FT                   LKQAPPDGSTLH"
FT   misc_feature    complement(156172..156795)
FT                   /note="HMMPfam hit to PF02230, DE
FT                   Phospholipase/Carboxylesterase, score 5.2e-29"
FT   CDS             156918..157625
FT                   /transl_table=11
FT                   /locus_tag="BB3086"
FT                   /product="conserved hypothetical protein"
FT                   /db_xref="InterPro:IPR017166"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHX0"
FT                   /protein_id="CAE33578.1"
FT                   /translation="MLAPERIHPALWRATQLAHGPTRKLPTGYADLSAQLPGGGWPLGA
FT                   LVELLLPQPGSGEIRLLRPALAQLEARRAIALVQPPHAPHIASWASWRLDPRQLLWVAP
FT                   ERPADALWAAEQILKAGSCAALLCWLPQVRPESLRRLHLAAQGGDALFVALRPAAAEQH
FT                   ASPAVLRLALAPAPGGLSIRIVKRRGPACEHPVHVGLEAGAGLSVFPAPHAPLDRRLPA
FT                   QPVAGRRTPALVS"
FT   CDS             157642..159027
FT                   /transl_table=11
FT                   /locus_tag="BB3087"
FT                   /product="conserved hypothetical protein"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHW9"
FT                   /protein_id="CAE33579.1"
FT                   /translation="MLERECVGACSPAARLAGIRPGMRRAGALAIAPQAVLLERSPAAE
FT                   AQARQDAALALLQYTPQVALAEDGVLLDVGASLQVFGGPRALHRRIAATLRTLGLDASL
FT                   GMAPHAAGAWLLARDPARGAPRRVLRDATLARRLDRLPPALLPQAQARLDWLHDIGCQT
FT                   LGQLRALPRGGLQRRGGVELLRALDAAYGQAAQAHAWVQPPASFTRRIELTDYVEHAPA
FT                   LLHVAQRLCEQLGGWLAAHQRAVERIVLRLDHERGRHACAPTELTLALAQPAWQAHHLL
FT                   GLLRERLGRLVLPAPAIAVGLHAPDTVPQPAASTCLFPEPGGTPADHARLLDLLGARLG
FT                   RERVRRARPAADHRPEQANRWQAAHDPPPADPAADQPERLERPFWLLSPALPLSIQQHR
FT                   PTYNGQALRLVRGPERIESGWWDAALTVRDYFVAEDAAGARYWLYRERDARQARWFLHG
FT                   LFA"
FT   CDS             159036..162194
FT                   /transl_table=11
FT                   /locus_tag="BB3088"
FT                   /product="putative DNA polymerase III alpha chain"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2208"
FT                   /db_xref="GOA:Q7WHW8"
FT                   /db_xref="InterPro:IPR004805"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WHW8"
FT                   /protein_id="CAE33580.1"
FT                   /translation="MSAILPGYAELHCQSNFSFLQGASHPEELVTRAGELGYAALALTD
FT                   ECSLAGVVRAHVEAREQKLPLIIGSSFTLQAGADAPPLDLTLLAQNREGYGNLAELITL
FT                   GRGRAAKGQYLLTPADIEAPAGDNAHLRGMPDCLAILAPPPGLAAERLAEQARWLAAQC
FT                   PGRAWIGLTLLHHCRDDLHRAAVEHAAHASGLPIVALGQAQMHRRSRKPLHDTLAAIRT
FT                   GRSVGQCGYDLAANAERHLRSRLRLASLYPAQALAQTLAIARRCTFSLDELQYEYPDEI
FT                   VPAGHTPASYLRQQTYLGARQRFPEGMTPAVAAQVEKELALINELRYEAYFLTVYDIVG
FT                   YARSQGILCQGRGSAANSAVCYCLGITAVDPARGNTLFERFISKERNEPPDIDVDFEHQ
FT                   RREEVIQYIYEKYGRQRAALTAVVISYRPRSVLRDTGRALGVDNGIIDAVARAHQWWDG
FT                   KKEMLRSLAACGLDPASRVARQWAELAETLMGFPRHLSQHPGGFVISRGKLSRLVPIEN
FT                   AAMPGRSVVQWDKDDLDALRLLKVDVLALGMLSVLRRALALAGQRRGRPLALHEIPPDD
FT                   DATYDMICAADTIGVFQIESRAQMSMLPRLRPRQYYDLVVQVAIVRPGPIQGGMVHPYL
FT                   RRRQGREDITYPGPAVRKALARTLGVPIFQEQVMQIAVDAAGFTPGEADALRRSMAAWR
FT                   RKGGVDKFRAQLVGGLLARNYTADFAQALFRQIEGFGEYGFPESHAASFALLAYASSWL
FT                   KCHEPEAFLAALLNSQPMGFYAPAQLVQDARRHGVRVLPADVLYSGWEASLQDAPGAAR
FT                   PAVRLGLNLVKGLREDSARAIEQARVRRPFADTADMARRAGLPRQALDALAAADALRTL
FT                   AGHRRLASWQAAASAQSRDLLREAVIVETETPALPAPSEGQTVAADYRSVGLTLGRHPL
FT                   ALLRPQLAARNFQTAAVLNTYPNRRLARACGIVTVRQRPQTAKGTIFVTLEDETGPINA
FT                   VVRPELIERQRRELLDATLLGIYGTWQSVDGVRHLVAQRLVDLSSLLGQLSQDGLAAAS
FT                   RNFH"
FT   misc_feature    159060..159257
FT                   /note="HMMPfam hit to PF02231, DE PHP domain N-terminal
FT                   region, score 3.1e-14"
FT   misc_feature    160698..160745
FT                   /note="PS01323 Phosphotriesterase family signature 2."
FT   misc_feature    161904..162131
FT                   /note="HMMPfam hit to PF01336, DE OB-fold nucleic acid
FT                   binding domain, score 0.0071"
FT   misc_feature    161952..161975
FT                   /note="PS00030 Eukaryotic putative RNA-binding region RNP-1
FT                   signature."
FT   CDS             complement(162260..163549)
FT                   /transl_table=11
FT                   /locus_tag="BB3089"
FT                   /product="putative amino acid dehydrogenase subunit"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2210"
FT                   /db_xref="GOA:Q7WHW7"
FT                   /db_xref="InterPro:IPR006076"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHW7"
FT                   /protein_id="CAE33581.1"
FT                   /translation="MRVCVVGAGVVGVTSAYFLARQGHEVVLVDSHAQPAEASSYANGG
FT                   QLSYSYVAPLAGPGVLPSVPGWLLRSDSPLRLRPRLDPHQWRWCLQFALACRASVAERS
FT                   TAQLQTLSYLSRDVMDGLLAQEELEFGHVRNGKLIAYRDHALLEKARRLVAYQASLGAE
FT                   QQVLDAAQTLALEPALAGLGASLAGAVYTPSEEAGDCRQFTEALFARLQQLDNVQCLMS
FT                   NPVRGLWREGRRIVAVQAAQGDIGVDAVVLATGVGTRALLKPLGQDVPLYPLKGYSLSV
FT                   PLPVGDTTAPAISVTDYERRIVYARIGRVLRIAAMVDIGGADAAIEPARIDLLKRQVAE
FT                   AFPQLDLSQAVAWAGLRPATPTGKPLIGASRAADNLWLNIGQGALGFTLACGSAALLTA
FT                   QMSGLELPIDATPFEPHLRRACPRTGTGTR"
FT   misc_feature    complement(162332..163549)
FT                   /note="HMMPfam hit to PF01266, DE FAD dependent
FT                   oxidoreductase, score 0.00015"
FT   CDS             complement(163668..164138)
FT                   /transl_table=11
FT                   /locus_tag="BB3090"
FT                   /product="putative conserved DNA-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2211"
FT                   /db_xref="GOA:Q7WHW6"
FT                   /db_xref="InterPro:IPR000944"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHW6"
FT                   /protein_id="CAE33582.1"
FT                   /translation="MPRSAAHPAPAMQLNRFTDFGLRVMMYLTQCRDRTVPVTIPEIAA
FT                   RFEISRNHLVKVVHFLSQQGWIVATRGKGGGLRLARDAVEYRIGELVRVLEDQGALVNC
FT                   AQPPCVLNGACRLSGALAESLQAFYRTLDGYTLDDLVRAPTALAIVRLHRAA"
FT   misc_feature    complement(163743..164105)
FT                   /note="HMMPfam hit to PF02082, DE Uncharacterized protein
FT                   family UPF0074, score 1.7e-29"
FT   CDS             complement(164149..165357)
FT                   /transl_table=11
FT                   /gene="fhp"
FT                   /locus_tag="BB3091"
FT                   /product="flavohemoprotein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2212"
FT                   /db_xref="GOA:Q7WHW5"
FT                   /db_xref="InterPro:IPR001221"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WHW5"
FT                   /protein_id="CAE33583.1"
FT                   /translation="MLSPEVRALVKATAPVLKEHGEALTRHFYTRMLGGNPELRQLFNQ
FT                   GHQQSGQQQQALAAAVAAYAEHIDDPSVLLPVVERIAHKHVSLGVRAEHYAIVGKHLLA
FT                   SIREVLGEAATDELIDAWAAAYGQLADLLIGRERALYAAAASRDGGWTGWRAFKVVRKT
FT                   PESAEITSFYLAPADGGATPDYLPGQYVSVRVYVPELGLMQPRQYSLSEAPGMPGQLRI
FT                   SVKREAGSPAGMVSGTLHNRINEGDVLDVSPPQGDFTLDAEDGRPVVLLSGGVGLTPMV
FT                   SMLNHLTARDDGRQIRFVHACREAGVHAMKEHINALAAKRPNVRKAVFYERVGADDRRG
FT                   VDYDYEGRVDLHAIRDEVILPDADYYLCGPLPFMQAQRRALADLGVAEHRIHAEVFGTG
FT                   GVA"
FT   misc_feature    complement(164215..164565)
FT                   /note="HMMPfam hit to PF00175, DE Oxidoreductase
FT                   NAD-binding domain, score 7.8e-20"
FT   misc_feature    complement(164578..164892)
FT                   /note="HMMPfam hit to PF00970, DE Oxidoreductase
FT                   FAD-binding domain, score 4.8e-05"
FT   misc_feature    complement(164944..165357)
FT                   /note="HMMPfam hit to PF00042, DE Globin, score 6.8e-19"
FT   CDS             165504..165968
FT                   /transl_table=11
FT                   /locus_tag="BB3092"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2213"
FT                   /db_xref="GOA:Q7WHW4"
FT                   /db_xref="InterPro:IPR019004"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHW4"
FT                   /protein_id="CAE33584.1"
FT                   /translation="MSHDTLKARLSDSVKDAMRAKATDRLATLRFLLAAIKQREVDERR
FT                   ELSDAEITAVIEKQVKQRRESIAAFEQAGRTETAEHEKAELAVLQEFLPQAAAPEEVAA
FT                   AVDAALAEVSAQGVTGAPAMGKVMAILKQKLAGRADMAALSQQVKARLLP"
FT   misc_feature    165528..165959
FT                   /note="HMMPfam hit to PF02637, DE GatB/Yqey domain, score
FT                   3.2e-16"
FT   CDS             complement(165992..167077)
FT                   /transl_table=11
FT                   /gene="dinP"
FT                   /locus_tag="BB3093"
FT                   /product="DNA-damage-inducible protein p"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0909"
FT                   /db_xref="GOA:Q7WHW3"
FT                   /db_xref="HSSP:1IM4"
FT                   /db_xref="InterPro:IPR017963"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHW3"
FT                   /protein_id="CAE33585.1"
FT                   /translation="MSQLQRKIVHIDMDAFYASVEQRDNPALRGLPVVVAWTGPRSVVC
FT                   AASYEARRYGVHSAMAAARAQRLCPDAVYVPPDFNRYREVSRQVRAIFARHTDLIEPLS
FT                   LDEAYLDVTCNKLGLASATEVAQIIRRQIREETGLTASAGVAPNKFLAKIASDWNKPDG
FT                   LFVIKPSRVLDFLQPLPVRKVPGVGKVMQARLEQLGIQTVGDLSRHSVAELEQRFGRYG
FT                   VRLYELARGIDERAVQADQPAQQVSAETTFDTDLALEALGEALERLAAKVWEQGAKKGR
FT                   IGRTTVLKLKTDRFRILTRSLTLMQPPGSAAELAAIARQLCTRVDLPAHTRYRLVGVGM
FT                   SNFPDAQAEAPRQAELFGDAF"
FT   misc_feature    complement(166043..167047)
FT                   /note="HMMPfam hit to PF00817, DE impB/mucB/samB family,
FT                   score 2.6e-112"
FT   CDS             167175..167585
FT                   /transl_table=11
FT                   /locus_tag="BB3094"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0908"
FT                   /db_xref="InterPro:IPR006683"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHW2"
FT                   /protein_id="CAE33586.1"
FT                   /translation="MSTPHTDFFGLTIPFMQLLGVVPEHSGNGTARTRLPARADLVNSR
FT                   GDIHGGTLMSVLDFTLGAAIRGDTPEVGVATIDMNTSFMSPGRGDLVIETRCLRRGASI
FT                   AFCEGEIRDSAGELVAKATATFKIIQRRPGGD"
FT   misc_feature    167199..167561
FT                   /note="HMMPfam hit to PF02584, DE Uncharacterized protein
FT                   PaaI, COG2050, score 9.2e-05"
FT   CDS             complement(167588..168040)
FT                   /transl_table=11
FT                   /locus_tag="BB3095"
FT                   /product="putative lipoprotein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0907"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHW1"
FT                   /protein_id="CAE33587.1"
FT                   /translation="MRIARIAAVAGVVGLAGCSVGTAPGAGAVSGNYKLQTNYQDAYRY
FT                   ATVQAERCLVGQGGYRVVGELDDNARTGLVRVVAPFFDGEMARVEIGAIDAHSSNVYIG
FT                   MWGKSIWNTDALRAMREAVVYGVPSCVAYMPGDPAPTEEVWRLPNR"
FT   misc_feature    complement(167954..168022)
FT                   /note="1 probable transmembrane helix predicted for BB3095
FT                   by TMHMM2.0 at aa 7-29"
FT   misc_feature    complement(167957..168040)
FT                   /note="Signal peptide predicted for BB3095 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.998) with cleavage site
FT                   probability 0.578 between residues 28 and 29"
FT   misc_feature    complement(167987..168019)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             168200..170113
FT                   /transl_table=11
FT                   /locus_tag="BB3096"
FT                   /product="putative peptidase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0906"
FT                   /db_xref="GOA:Q7WHW0"
FT                   /db_xref="InterPro:IPR001375"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHW0"
FT                   /protein_id="CAE33588.1"
FT                   /translation="MLTLIKRTVLAAGLIGTTLGAAAQPPRAYPLKDFFRNPERGYFRL
FT                   ADDGKTLGFMQPVSIDGQPPRMNIYVQALADGVPAGEPRKLTSETARDISNFFWKGDDT
FT                   VLYQKDFGGDENFHVLAVNARTGQVADLTPYEGVRASIEDDLPDDPDHVLISHNRRDPQ
FT                   VFDVYRVNVRTGAAELVAQNPGNVVGWQTDHAGKVRAAITSDGLNTTLLYRDDEAAPFR
FT                   PLITTDYRVSVSPAFFTFDDRKLYALSNRGRDKLALVVIDPATPDVEQPVFEPDEVDLD
FT                   AAGYSRKRKVLTVASYQTDKPRHRFFDAETEALYARLARALPGYDFALQGWNRDEDTFI
FT                   VAAYNDRTPGSRYLYDARRDSLHKLADINPAIPEADMAPVRPVSYQSRDGLTIHGYLTL
FT                   PAGRAPRNLACIVNPHGGPWARDGWGYNPEVQFLANRGFCVLQMNFRGSTGYGRKFWEA
FT                   GFGQWGLKMQDDITDGVQWLIDQGIADPRRIGIYGGSYGGYATLAGVAFTPDLYAAAVD
FT                   YVGVSNLFTFMNTIPPYWKPLLAKMQDMVGDPVRDKARLEATSPALHVDRIKTPLFIAQ
FT                   GAKDPRVNKAESDQVVQALRQRGVEVEYMVKDNEGHGFHNDENKFEFYAAMEKFFTEHL
FT                   KP"
FT   misc_feature    168200..168268
FT                   /note="Signal peptide predicted for BB3096 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.925 between residues 23 and 24"
FT   CDS             170249..172861
FT                   /transl_table=11
FT                   /gene="mrcA"
FT                   /gene_synonym="ponA"
FT                   /locus_tag="BB3097"
FT                   /product="penicillin-binding protein 1A"
FT                   /EC_number="2.4.2.-"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0905"
FT                   /db_xref="GOA:Q7WHV9"
FT                   /db_xref="InterPro:IPR001460"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHV9"
FT                   /protein_id="CAE33589.1"
FT                   /translation="MNTSSQSTKPPPPGGPRLFRKSLLIKAGVAVAGLGAAGALALGLA
FT                   LALAWPSLPELHAMTDYRPRVPLRVYTADGVLIGEFGEEHRNVLRADEIPQVMKQAVLA
FT                   AEDDRFYQHGGVDWMGVARAVLTNMVKLSKSQGGSTITMQVARNFYLSSEKTYSRKFYE
FT                   LLLTYKIEAELTKDQILELYMNQIYLGHRSYGFAAASRTYFGKPLSEVTPAEAAMLAGI
FT                   PKAPSRANPLASLPRATARQQYVLGRMQTLGYLTPEQVQEARAQTIVLRGSEGGPAHGF
FT                   AIHGEYPAELVRQLMYSIYQDGAYTHGIDVYTTIDSKAQQAAYRAVRAGVLDYTRRAPY
FT                   PGPQAQIDLPDGIEQDAQAFDEILDSVQDQAPDSDDLLAGVVLSASPTSVTVARTATDI
FT                   VTVDDKKALAIVARALAPNAKDALRIRRGSVVYLHKNGDTWEIINMPALQAALVSMSPA
FT                   DGAISAMIGGFDFHRGSFNRVTQAWRQPGSTIKPFVYAAALERGMTPATQVNDQPFMLT
FT                   AEQTGSRAWQPKNDGNRYEPMLTLREGLYRSKNMVSIRILQAIGPEYARDYLTRFGFEQ
FT                   ARWPAVLPLALGAGGATPLQVANAYSVFANGGYRVTPYLIDRVTDRSGKVLMQTTPVKA
FT                   GDETARAIDPRTAWVIDDIMHDTTTKGTAARVYRTLKRNDIAGKTGTTNDAVDVWFSGY
FT                   TAQQTTTVWMGFDQPRSLGTNEFGSGLALSTWLDYEQPTLKGTPQAPRAPRPQGLIVDN
FT                   GEYYFSEFPPGQAVAALDLSSGDELTDFLNNMRPSDGAPARVQQPGQPPAGSSSGGQPP
FT                   IPPIPVPRADLPDGQATPASLPLGAPPAAASAPPAAPAHGGASAQPVTLPGRVGATPL"
FT   misc_feature    170249..170389
FT                   /note="Signal peptide predicted for BB3097 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.992) with cleavage site
FT                   probability 0.386 between residues 47 and 48"
FT   misc_feature    170450..170956
FT                   /note="HMMPfam hit to PF00912, DE Transglycosylase, score
FT                   2.5e-89"
FT   misc_feature    171506..172432
FT                   /note="HMMPfam hit to PF00905, DE Penicillin binding
FT                   protein transpeptidase domain, score 2.2e-18"
FT   CDS             complement(172863..173597)
FT                   /transl_table=11
FT                   /gene="pphA"
FT                   /gene_synonym="prpA"
FT                   /locus_tag="BB3098"
FT                   /product="serine/threonine protein phosphatase 1"
FT                   /EC_number="3.1.3.16"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0904"
FT                   /db_xref="GOA:Q7WHV8"
FT                   /db_xref="HSSP:1G5B"
FT                   /db_xref="InterPro:IPR004843"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHV8"
FT                   /protein_id="CAE33590.1"
FT                   /translation="MAPNLQYPAFLRLPRNPAGRDFAVGDIHGHFSRLEQALDECGFDP
FT                   RRDRLFSVGDLIDRGPDSEAAVQWLAHPWFYAVQGNHEDYAIRHVRTGLVDQDNWRSYG
FT                   GGWFLDAAPERQRAWAGAFAALPVVIEVATQAGPVGLLHADCPVRDWSRLEYFLQARPK
FT                   RARSVCQWSRERLASGDARGVDGIRAVVAGHTPVSEPVVLGNVYHIDTQGWRPHGYFTL
FT                   LDLSTLSAWPRPAQAGAPAARG"
FT   misc_feature    complement(173004..173543)
FT                   /note="HMMPfam hit to PF00149, DE Calcineurin-like
FT                   phosphoesterase, score 3.4e-09"
FT   CDS             173761..174942
FT                   /transl_table=11
FT                   /locus_tag="BB3099"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0903"
FT                   /db_xref="InterPro:IPR005625"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHV7"
FT                   /protein_id="CAE33591.1"
FT                   /translation="MSTASTIKTWYLVHKWTSLVCTLFLLIICITGLPLVFHHEIEHLL
FT                   DEGKPVAQVAEGTPDASLDTIVARAHALYPDEYIDYVFLDDEEPQVYVGFTPKLGKAVE
FT                   AGHAVRVDARTGDILHDGPKYSADRFSFMGIMLALHVDLYAGLAGELFLGLMGLLFVIA
FT                   IVSGVVLYGPFMKKLDFGTVRASRSNRLKWLDLHNLLGIVTLVWAFVVGLTGVINELST
FT                   PLFRLWQQTELQAMTAPYQGKPVPRPAELSAPQRAADTALAAVPDRALTGISYPGNAFG
FT                   SPQHYIVWLKGNTPLTSKLNTPVLVDGKTGELAAVARMPWYLTVLELSRPLHFGDYGGM
FT                   PLKIIWALLDLITIVVLGSGLYLWLARRKATDARVAELVRRHQQAAEPQRTPA"
FT   misc_feature    173776..174867
FT                   /note="HMMPfam hit to PF03929, DE Uncharacterized
FT                   iron-regulated membrane protein (DUF337), score 3.3e-82"
FT   misc_feature    join(173806..173874,174217..174285,174346..174414,
FT                   174790..174858)
FT                   /note="4 probable transmembrane helices predicted for
FT                   BB3099 by TMHMM2.0 at aa 16-38, 153-175, 196-218 and
FT                   344-366"
FT   CDS             174939..175151
FT                   /transl_table=11
FT                   /locus_tag="BB3100"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0902"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHV6"
FT                   /protein_id="CAE33592.1"
FT                   /translation="MTPRQHFYFVWGMPIVLGALSVFGLLAALLGTGVWHWASWLALAW
FT                   LLVVIARFWIVPRERRPAPGPRRGG"
FT   misc_feature    174939..175019
FT                   /note="Signal peptide predicted for BB3100 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.899) with cleavage site
FT                   probability 0.648 between residues 27 and 28"
FT   misc_feature    join(174957..175025,175038..175106)
FT                   /note="2 probable transmembrane helices predicted for
FT                   BB3100 by TMHMM2.0 at aa 7-29 and 34-56"
FT   CDS             complement(175148..176128)
FT                   /transl_table=11
FT                   /locus_tag="BB3101"
FT                   /product="putative oxidoreductase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0901"
FT                   /db_xref="GOA:Q7WHV5"
FT                   /db_xref="HSSP:1LQA"
FT                   /db_xref="InterPro:IPR020471"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHV5"
FT                   /protein_id="CAE33593.1"
FT                   /translation="MEYVRLGSTGLKVSRLCLGCMTYGEPARGNHAWTLDETQSRPFFR
FT                   QALDAGINFFDTANSYSDGTSEEFLGRALREYVPRDEVVVATKVFFPLRKEPNSGGLSR
FT                   KAIMREIDASLRRLGTDYVDLYQIHRWDYDTPIEETLQALHDVVKAGKARYIGASSMHA
FT                   WQFAKALYLADRHGWTRFSTMQNHYNLLYREEEREMLKLCRAEGVGVLPWSPLARGRLT
FT                   RDWAEGSARADTDDVLKRLYSATEQADRGVIDAVGEVAAQRGVSRAQVAMAWLLRQPAV
FT                   TAPIVGASKPRHLEDAVAALALRLTDEEAARLEAAYAPHPVAGFA"
FT   misc_feature    complement(175169..176110)
FT                   /note="HMMPfam hit to PF00248, DE Aldo/keto reductase
FT                   family, score 4.3e-73"
FT   CDS             complement(176174..177091)
FT                   /transl_table=11
FT                   /locus_tag="BB3102"
FT                   /product="probable oxidoreductase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0900"
FT                   /db_xref="GOA:Q7WHV4"
FT                   /db_xref="HSSP:1HW6"
FT                   /db_xref="InterPro:IPR020471"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHV4"
FT                   /protein_id="CAE33594.1"
FT                   /translation="MGHGVIIRENVLQECRIFHPVRFVNTREGFMAQVPVLKLNDGNAM
FT                   PQLGLGVWQVPNDQAAASVKAALAAGYRSIDTAAIYGNEAGVGEGLRAAGVARKDLFVT
FT                   TKLWNDRHGYDEAQRAMDESLRKLGLAYVDLFLIHWPVAGSDKFVDAWRAMVAMKEDGR
FT                   ARSIGVSNFTIANLRRLVDETGVVPAVNQVELHPGFAQRELRAFHAEQGIATESWSPLG
FT                   QGAVMHDATLAGIAARHGKSAAQVTLRWHLQNGLIVIPKSVTPARIQANIDVFDFELSA
FT                   DEMADIDALPEGPRLGPDPATFTG"
FT   misc_feature    complement(176210..176977)
FT                   /note="HMMPfam hit to PF00248, DE Aldo/keto reductase
FT                   family, score 1.2e-128"
FT   misc_feature    complement(176270..176317)
FT                   /note="PS00063 Aldo/keto reductase family putative active
FT                   site signature."
FT   misc_feature    complement(176576..176629)
FT                   /note="PS00062 Aldo/keto reductase family signature 2."
FT   misc_feature    complement(176828..176881)
FT                   /note="PS00798 Aldo/keto reductase family signature 1."
FT   CDS             177199..178965
FT                   /transl_table=11
FT                   /locus_tag="BB3103"
FT                   /product="ABC transporter, ATP-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0899"
FT                   /db_xref="GOA:Q7WHV3"
FT                   /db_xref="HSSP:1MV5"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHV3"
FT                   /protein_id="CAE33595.1"
FT                   /translation="MRTLAPFLWPADRPGLKARVVIAILCLLAAKAAVVYVPILYKSAV
FT                   DQLGGGAPGAVTVPLGLILAYGAARVLSLLFSELRDAVFARVGQHAIRAVGLQIFRHLH
FT                   ALALRFHLARQTGGLTRAIERGTKGIQTLLTFLLFNVLPTLFEIGLVCAVLWKMFDGWL
FT                   ALATGATVTLYLAYTLVVTEWRTRFRRQMNETDSEANTKAVESLLNYETVKYFGNEEHE
FT                   AQRYDASLRRYERAAVRSQVSLSILNIGQAVIISAGLTLVMWMAARGIAQGRYTLGDFV
FT                   LVNTYLLQLYDPLSFFGFIYREIKQALIDMERMFELLGEGREIADPPGALALRLEGGAV
FT                   EFRDVYFGYDPRRPILKGVSFRIPAGKTVAVVGTSGAGKSTLARLLFRFYDADRGAILV
FT                   DGQDVRGVTQASLRAAIGVVPQDTVLFNDTIHYNIAYGRPGASDGEVQAAARLAHIHDL
FT                   IMAMPDGYRTMVGERGLKLSGGEKQRVAIARTLLKNPSIFLFDEATSALDTHTEREIQA
FT                   NLREVSQGRSTLIIAHRLSTIADADEIIVLGDGRVVERGRHQALLAQGGIYAGMWARQQ
FT                   EATRPAAVALDD"
FT   misc_feature    177256..178080
FT                   /note="HMMPfam hit to PF00664, DE ABC transporter
FT                   transmembrane region, score 2.8e-35"
FT   misc_feature    join(177259..177318,177361..177429,177595..177663,
FT                   177673..177741,177922..177990)
FT                   /note="5 probable transmembrane helices predicted for
FT                   BB3103 by TMHMM2.0 at aa 21-40, 55-77, 133-155, 159-181 and
FT                   242-264"
FT   misc_feature    178294..178848
FT                   /note="HMMPfam hit to PF00005, DE ABC transporter, score
FT                   3.1e-63"
FT   misc_feature    178315..178338
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    178627..178671
FT                   /note="PS00211 ABC transporters family signature."
FT   CDS             179020..179403
FT                   /transl_table=11
FT                   /locus_tag="BB3104"
FT                   /product="putative ferredoxin"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0898"
FT                   /db_xref="GOA:Q7WHV2"
FT                   /db_xref="InterPro:IPR017941"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHV2"
FT                   /protein_id="CAE33596.1"
FT                   /translation="MTDSTPAVRVCAAADLVDGGLGVKVPVTDGAGQASAFFVRYRGQV
FT                   YGYLNRCAHVGVELDWENSFFTRAGDLIMCARHGATYEPDTGLCIGGPCRNGRLTALQV
FT                   DERPDAGGMAVYWLPSGKIQPRG"
FT   misc_feature    179035..179346
FT                   /note="HMMPfam hit to PF00355, DE Rieske [2Fe-2S] domain,
FT                   score 7e-08"
FT   CDS             complement(179413..179664)
FT                   /transl_table=11
FT                   /locus_tag="BB3105"
FT                   /product="hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0896"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHV1"
FT                   /protein_id="CAE33597.1"
FT                   /translation="MVQKVLNGFAVVAFATQPEHGMPPRAFIQTAPMDGAGQAEPQVFE
FT                   IFLARRFRSAVEAMSAARNALDRVVSVDQDGVPAPLPD"
FT   CDS             complement(179858..180073)
FT                   /transl_table=11
FT                   /locus_tag="BB3106"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0895"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHV0"
FT                   /protein_id="CAE33598.1"
FT                   /translation="MSVMCPACQAINAGSSGVEPHPRLGHQGFTNPSQKGREANREDHF
FT                   RCIECGAKWLRETDRWGVDLGFRLAP"
FT   CDS             complement(180170..181288)
FT                   /transl_table=11
FT                   /gene="pmi"
FT                   /locus_tag="BB3107"
FT                   /product="putative mannose-6-phosphate isomerase"
FT                   /EC_number="5.3.1.8"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0894"
FT                   /db_xref="GOA:Q7WHU9"
FT                   /db_xref="InterPro:IPR010819"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHU9"
FT                   /protein_id="CAE33599.1"
FT                   /translation="MSAASFHTDLPALVAQLRQHFNTVIVPLWLGRGFDAGLGLPCEAL
FT                   DAHGAPLPAQRYRAMACARQLYVFSRTDGAAAAAHAERLFSSLLRYFQNAAHGGWRHSV
FT                   DAQGQPLDDTQDLYTHAFVVFACAAYFARTRDARARKTLLATVDVIEQRFRTRQGLYVA
FT                   ALSADWAQVVRGPAQNPVMHLTEAYLAAAGVVEPAWFAQTLGRLTQDVASTFLYAPRLC
FT                   IAEEPLDQPPRFEPGHQFEWYSLLHGAPDLFGDLELGSALQRGCAWVRQHGVDAHSHGV
FT                   AAVLDESGAVRDATQRIWAQTEYARYLALSGQWPELATQLRAFQARFLHQDGWHECLDA
FT                   QGNVSRADMPSTTPYHLATCYAALEDALAGQG"
FT   CDS             complement(181408..181620)
FT                   /transl_table=11
FT                   /locus_tag="BB3108"
FT                   /product="hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0893"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHU8"
FT                   /protein_id="CAE33600.1"
FT                   /translation="MQHRDQEVLIDVSTAAMDTGGYGVLLTVTAEGGTEVDAAFSYLGT
FT                   CASLDEARDRAEAFAQDWLRENIYR"
FT   CDS             complement(181780..182001)
FT                   /transl_table=11
FT                   /locus_tag="BB3109"
FT                   /product="hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0892"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHU7"
FT                   /protein_id="CAE33601.1"
FT                   /translation="MGDVMQRGELAYWLNVVAENGEPGAPQIPVPEQFVTALTTLRCIE
FT                   RNAQGQLVVTEKGRLALHMEEPGALHRQ"
FT   CDS             complement(182295..184607)
FT                   /transl_table=11
FT                   /locus_tag="BB3110"
FT                   /product="autotransporter"
FT                   /db_xref="GOA:Q7WHU6"
FT                   /db_xref="InterPro:IPR003991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHU6"
FT                   /protein_id="CAE33602.1"
FT                   /translation="MLGAIPIFGKKTQQPFKALPVVCRREAKDTGPWCKRLDFPGVSWR
FT                   LSNPSFCRLSVVPSRNCRSTMTSKNMISLTRDRTMKRGAVASRRVRGVLAAKSLPALGL
FT                   ALASAGLWVAAPSLAQGIDLSPSAWVVDESPLTDEELAAVLPTGMTLEEFKRGMEAWAP
FT                   GSVASLQPSAPKNGAAGAVGGEHGHSSDSPKVNVPSSEPSVGDASVGGGGGGSNSRHEN
FT                   GDGGVGNGKGGAGGSASGPGAVAGTAPGGAKHSDSGPSAGAPVSPGVAPGPGAGVASGM
FT                   GASGSAGEAHSPPDKKVPAEGGQGKGPGAGTGGAGGSPVPGSGGGGSVPSGAAGGDSPP
FT                   KPPSTGGKPGGGDQPPQKGEGNANGQAPDGGMDPVPPRDGDAGAKPPGSGADPDRPEGG
FT                   GGDGAVPNLPEAGGNGPRPPAGNDDAGPRPPQGGDGNDAPAVPPAPPAPPAPPAPPAGN
FT                   GVYDPGTHTLTTPASAAVSLASSSHGVWQAEMNALSKRMGELRLTPVAGGVWGRAFGRR
FT                   QDVDNRVAREFRQTISGFELGADTALPVADGRWHVGAVAGYTNGRIKFDRGGTGDDDSV
FT                   HVGAYATYIEDGGFYMDGIVRVSRIRHAFKVDDAKGRRVRGQYRGNGVGASLELGKRFT
FT                   WPGAWYVEPQLEVAAFHAQGADYTASNGLRIKDDGTNSMLGRLGLHVGRQFDLGDGRVV
FT                   QPYMKLSWVQEFDGKGTVRTNDIRHKVRLDGGRAELAVGVASQLGKHGSLFGSYEYAKG
FT                   SRQTMPWTFHIGYRYAW"
FT   misc_feature    complement(182301..183131)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF03797, DE Autotransporter
FT                   beta-domain, score 3.5e-85"
FT   CDS             complement(184708..186294)
FT                   /transl_table=11
FT                   /locus_tag="BB3111"
FT                   /product="autotransporter"
FT                   /db_xref="GOA:Q7WHU5"
FT                   /db_xref="InterPro:IPR003991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHU5"
FT                   /protein_id="CAE33603.1"
FT                   /translation="MPSTDGACFRRRAGPQVCGPGVPCSLRRRSFMNPFHHAPRRRAAH
FT                   IQVLLLSMSALLWLPAAQAQYWSPGAQAGPHNVGTDGVFDEDEEPGPRPPLPKEDLEAL
FT                   EDLFGSGDTPPEPPPAPPSPGPMAPNVPEDASPHLPDHAGGDAMPPASPPAPPEARPKQ
FT                   PEARPEALPEAPPQAQPEAPPQAQPEAPPVVPPPAEPPAARPPAVPPAWPAGDAVYLPG
FT                   TRTLTPTANAAVGTASAAQGLWQAEMNALGKRMGELRLTPAAGGVWGRAFTQRQKLDNG
FT                   VAREFRQTVGGFEVGADTALAAADGRWHIGAVAGYSHGKLKFGRSGTGEGDSVHVGAYA
FT                   TYIEDGGFYMDGIVRVARYAHEFKAPDAKGRRVRGKYRANGVGASLELGKRFTWAGAWY
FT                   VEPQLEMAVFHAQGGSYRAGQDLRVKDNGLTSLLGRVGLHVGRQFDLGDGRVVQPYAKL
FT                   SWLQEFDGKNTVRTNGVRHKSRLDGGRAELDLGVAAQLGKHGSLYGSYEYAKGSRQTMP
FT                   WTFHIGYRYTW"
FT   misc_feature    complement(184714..185544)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF03797, DE Autotransporter
FT                   beta-domain, score 7.9e-78"
FT   CDS             187097..187402
FT                   /transl_table=11
FT                   /locus_tag="BB3112"
FT                   /product="hypothetical protein"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHU4"
FT                   /protein_id="CAE33604.1"
FT                   /translation="MPAKDVPYQSMNLLCAILPEGNTSNRVGRRLADLLVQDAQGRLYR
FT                   VERHRIEGGHPDLVGGIDYIYCRLAGGGVVRCIDEQTYELPDGTVAHVVPDSTLRS"
FT   CDS             complement(187415..188386)
FT                   /transl_table=11
FT                   /locus_tag="BB3113"
FT                   /product="putative membrane protein"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHU3"
FT                   /protein_id="CAE33605.1"
FT                   /translation="MQRLQASLERRQVGIYFAAMALGAVLAWHRPGLQVGEATLNLMLA
FT                   GMLLATFMQVPLAGWRATLPGMRFLGVLLSVNFVLVPALVWGLAALLPADPMIRLAVLL
FT                   VLLAPCIDYVVTFAQLGRADARALLAATPVLLCGQMLLLPLYLNVMLGSDAAALIRPGP
FT                   FVQAFVWLIALPLAAATGVQWAAARSAAWRGAASVVGLLPVPATALVLATIVAAVAPRM
FT                   ALAGEAVSRVVPVYLLFAVIAPAAGWLAARRARLAAPQARAVAFSAGTRNSLVVLPLAL
FT                   AVPGGVPLLPALIVAQTLVELCAELLYVRVLGRAGKDRAGEG"
FT   misc_feature    complement(join(187505..187573,187634..187702,
FT                   187730..187798,187835..187903,187946..188014,
FT                   188033..188101,188114..188182,188195..188263,
FT                   188291..188350))
FT                   /note="9 probable transmembrane helices predicted for
FT                   BB3113 by TMHMM2.0 at aa 13-32, 42-64, 69-91, 96-118,
FT                   125-147, 162-184, 197-219, 229-251 and 272-294"
FT   CDS             complement(188454..189881)
FT                   /transl_table=11
FT                   /locus_tag="BB3114"
FT                   /product="putative membrane protein"
FT                   /db_xref="GOA:Q7WHU2"
FT                   /db_xref="InterPro:IPR000160"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHU2"
FT                   /protein_id="CAE33606.1"
FT                   /translation="MAISDANRGGAPGAAPGPDPAHILHELAGLMAISPGRDFLDELVN
FT                   RAVQRLGVDYAWVVLHGAKGEHARTVLSANCRMRWNGAESYLATGQSALAGVLSHATQY
FT                   VCARDLERHVPGDLALRRLGAQACVAHALRDESGLQRGHVAFVFSEPLADPAIYVSALS
FT                   ACATFTERAVLALDAERKARQEALQLASRYQALFEKAPVLINAFDARGKCILWNLECER
FT                   KFGWSVEEVNNHPEPLALFYPDPQTRARVVASVSQAPGRAFEEWHPVTRAGKVLSTLWS
FT                   NIVLESGTVVNIGLDITERKRAELALTRLATIDSLTDCWNRAEILKILRQEITRLRQHP
FT                   DQPLAVVMLDLDHFKQLNDLHGHLVGDAALRYFSDQLRSNLRGTDFVGRIGGEEFLALL
FT                   PGCDGDAALAMADRLRAALRNDPFTTEGQAAPLSVSVGIAFATPEDTAVSDVMRRADTA
FT                   LYEAKRRGRDRAVVYFG"
FT   misc_feature    complement(188475..188963)
FT                   /note="HMMPfam hit to PF00990, DE GGDEF domain, score
FT                   1.2e-60"
FT   misc_feature    complement(189108..189311)
FT                   /note="HMMPfam hit to PF00989, DE PAS domain, score
FT                   4.3e-05"
FT   CDS             complement(190230..191888)
FT                   /transl_table=11
FT                   /locus_tag="BB3115"
FT                   /product="probable methyl-accepting chemotaxis protein"
FT                   /db_xref="GOA:Q7WHU1"
FT                   /db_xref="InterPro:IPR003660"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHU1"
FT                   /protein_id="CAE33607.1"
FT                   /translation="MRRNLPVTGHEFVLQDDQYLISKTDLKGRITYCNPAFIAISGFSR
FT                   EELLGQPHNIVRHPDMPEDVFADMWATLQARKPWLAVVKNRHKSGGFYWVLANAMPVIE
FT                   AGNVTGYASVRVKATQAQIEAAEHFYAQVESGRMGGHGLRHGQRVPRGWRRAARALAFP
FT                   LRKGVRPALLRLAAAMCGLAAIPTYFAIGAMPPEAAPYGWGAYALGALGAVLAAMALGG
FT                   RFGRQLRNAEEVARQIAAGNLVNEVDSGVGGEMRNLYFYLDIMRKSLIGISTEVIGKTS
FT                   EHVHTISRLREDSQGLAARTEAQSAALQDTASSVEQLAETVTRNAESAGVAARLTQESS
FT                   EVAAQGGAVVGELVATMQGLDASSRKMAEIVSVIEGIAFQTNILALNAAVEAARAGEQG
FT                   KGFAVVAAEVRSLAQRTAQAAKEVKVLIDDSVGRMSTGSAQAGRAGETMRELVQSVERV
FT                   TALMAEISTASGEQSTGVAQISSAVHRMEEVVQQNVSMVGELTHVAEHLGQESGSLVEA
FT                   IGVFRTPGAGARAIGMPEQAPRRAPVRTLLLAEHP"
FT   misc_feature    complement(190317..191015)
FT                   /note="HMMPfam hit to PF00015, DE Methyl-accepting
FT                   chemotaxis protein (MCP) signaling domain, score 1.8e-75"
FT   misc_feature    complement(191076..191282)
FT                   /note="HMMPfam hit to PF00672, DE HAMP domain, score
FT                   0.00016"
FT   misc_feature    complement(join(191214..191282,191310..191378))
FT                   /note="2 probable transmembrane helices predicted for
FT                   BB3115 by TMHMM2.0 at aa 171-193 and 203-225"
FT   CDS             complement(192048..193622)
FT                   /transl_table=11
FT                   /locus_tag="BB3116"
FT                   /product="putative membrane protein"
FT                   /db_xref="InterPro:IPR001633"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHU0"
FT                   /protein_id="CAE33608.1"
FT                   /translation="MYFPLRKALLTGLWTAAALGAVIGPSLLAVDMVREYGLRQQREQA
FT                   QVLAQRLLGRIGLTADRLLRIHRELVHTGGSSPCAPYSTYLMQQQVLRFPDVRAVAYVE
FT                   EGRVLCSSLGDTVTGVDLGPSDFTTGNRISVWNSAVLPAAPETPFRVFAKEGYAIIMER
FT                   ESTNQLGGAVPQAMAAVSFSGTPDDAIVWGELPRAWFKRARESNAFVDDKYVVAVQRST
FT                   AQGLVALGAVASSQGAEALQRLAILLVPLSAAAGLGLLVGAVILARRQFSLPQLIRSGL
FT                   RRNEFYMVYQPMVEVGTGRCVGAEALIRWRRRNGDLIAPDVFIDEAERVGLIGKITERV
FT                   FELVSSDVQRWRGRLGDLYISINVSAADMASGAAERLLSEMFARTGLTPSQVVVELTER
FT                   ALLHSDEAVAAIKIIRKMGVRVAIDDFGTGYSSLAYLTSFEVDGLKIDKRFVDAIGRDA
FT                   PSSSVSVHIIEMAKSLGLRVVAEGVETAGQQRFLSEHGVDYAQGWLFGRPMPLNELLAM
FT                   ARRPPPG"
FT   misc_feature    complement(192084..192818)
FT                   /note="HMMPfam hit to PF00563, DE EAL domain, score
FT                   7.5e-97"
FT   misc_feature    complement(join(192825..192893,193527..193595))
FT                   /note="2 probable transmembrane helices predicted for
FT                   BB3116 by TMHMM2.0 at aa 10-32 and 244-266"
FT   misc_feature    complement(193536..193622)
FT                   /note="Signal peptide predicted for BB3116 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.998) with cleavage site
FT                   probability 0.894 between residues 29 and 30"
FT   CDS             194009..194350
FT                   /transl_table=11
FT                   /gene="csaA"
FT                   /locus_tag="BB3117"
FT                   /product="protein secretion chaperone"
FT                   /db_xref="GOA:Q7WHT9"
FT                   /db_xref="HSSP:1GD7"
FT                   /db_xref="InterPro:IPR002547"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHT9"
FT                   /protein_id="CAE33609.1"
FT                   /translation="MQLIDWTDFAKVELRVGRIVQALPFPEARKPASYILHVDFGAEIG
FT                   VKKSSAQVTHLYQPETLLGRLVVAVVNFPKKQIGPLQSECLVTGFHNAQGEVALCVPDR
FT                   DVPLGTKLL"
FT   misc_feature    194048..194341
FT                   /note="HMMPfam hit to PF01588, DE Putative tRNA binding
FT                   domain, score 4.1e-12"
FT   CDS             194552..194830
FT                   /transl_table=11
FT                   /locus_tag="BB3118"
FT                   /product="hypothetical protein"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHT8"
FT                   /protein_id="CAE33610.1"
FT                   /translation="MCCAARSTSKAVAHMERIIGSIEQACAIARRWAIRTGNKEATCAA
FT                   LAAAWYEAQAARPPTSAALLAHLAARIQESRQRVAVPRPAPIPPAED"
FT   CDS             195065..195508
FT                   /transl_table=11
FT                   /locus_tag="BB3119"
FT                   /product="putative membrane protein"
FT                   /db_xref="InterPro:IPR011637"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHT7"
FT                   /protein_id="CAE33611.1"
FT                   /translation="MPAREIQLTLIRVYIGLDFTHHFAEKFGLLGAQAYADVLHYFSTV
FT                   TANPQSMLLLAGLCEFAAFIGFTFGLFTRVAAAGTAAYLVIALFIGNHQHLGFTWANPG
FT                   GGWEFPAMWAFICLSFVLSGGGRWSLDRLLLPRLPAALRWLSR"
FT   misc_feature    join(195101..195169,195212..195280,195299..195367,
FT                   195395..195454)
FT                   /note="4 probable transmembrane helices predicted for
FT                   BB3119 by TMHMM2.0 at aa 13-35, 50-72, 79-101 and 111-130"
FT   CDS             195664..197238
FT                   /transl_table=11
FT                   /gene="lysP"
FT                   /gene_synonym="cadR"
FT                   /locus_tag="BB3120"
FT                   /product="lysine-specific permease"
FT                   /db_xref="GOA:Q7WHT6"
FT                   /db_xref="InterPro:IPR004841"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHT6"
FT                   /protein_id="CAE33612.1"
FT                   /translation="MAPPDHVVPSPANGHRHDARPATRLPEPTSLRRTLSARHLTMIAV
FT                   GGSIGTGLFVASGATIAQAGPGGALLAYLLVGIMVYFLMTSLGELAASMPVAGSFSTYG
FT                   AKYVDEGFGFALGWNYWYNWAVTVAVDLVAAQLVMAYWFPEMPGVLWSAAFLALIVGLN
FT                   ALSARGFGEAEFWFALIKVIAVLAFIAMGVLMLLGIIRGGEHGGLAYWTLDDAPFAGGF
FT                   AALIGVAMVVGFSFQGTELIGIAAGESKDPARNLPRAVRQVFWRILLFYVLAIAVIGLL
FT                   IPYTDPQLLRNEVSDVSVSPFALIFERAGLLAAASIMNAVVLTSVLSAGNSGMYAATRM
FT                   LYSLARDGKAPARFGRLSRSGVPLWALLATTAVAALCFLSFLFSPKAVYIWLLNTSGMT
FT                   GFIAWLGIAISHYRFRRGYVAQGNNLADLPYVSPFFPFGPLFAFVLCLVITLGQNYHAF
FT                   LQDRIDWTGAAATYVGIPLFLAIWAGYRLVRGSRFVRYRDMQFPDLRMRNRELNAMLSG
FT                   DCAEPRR"
FT   misc_feature    195754..197133
FT                   /note="HMMPfam hit to PF00324, DE Amino acid permease,
FT                   score 2e-227"
FT   misc_feature    join(195787..195855,195868..195936,195997..196065,
FT                   196108..196176,196195..196263,196321..196389,
FT                   196450..196518,196588..196656,196744..196812,
FT                   196822..196890,196951..197019,197062..197130)
FT                   /note="12 probable transmembrane helices predicted for
FT                   BB3120 by TMHMM2.0 at aa 42-64, 69-91, 112-134, 149-171,
FT                   178-200, 220-242, 263-285, 309-331, 361-383, 387-409,
FT                   430-452 and 467-489"
FT   misc_feature    195853..195948
FT                   /note="PS00218 Amino acid permeases signature."
FT   CDS             complement(197278..198009)
FT                   /transl_table=11
FT                   /locus_tag="BB3121"
FT                   /product="conserved hypothetical protein"
FT                   /db_xref="InterPro:IPR005184"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHT5"
FT                   /protein_id="CAE33613.1"
FT                   /translation="MPARSSTAAAQPATLTTHTWRLAAAVDRQGQPIAPLQIGLERPLR
FT                   LAFSERAINISGGCNAQFGGYTYGKGRLEIANLAATMKACEAGLMALDAAVGERLKGSL
FT                   RATLGEQAGQPRLVLVADNGDTLSFDGEPTPETLYGSKGETVFLEVAAQRVQCSHPMIP
FT                   QHRCLQVRERRYDAAGLQLPAQDDWHPLYQSVQGYEHRDGVRTVLRTKRYEWKNPPADA
FT                   PSTVYVLDMVVEQEMAPGGKR"
FT   misc_feature    complement(197647..198009)
FT                   /note="HMMPfam hit to PF03724, DE Domain of unknown
FT                   function (306), score 1.6e-09"
FT   CDS             198262..198486
FT                   /transl_table=11
FT                   /locus_tag="BB3122"
FT                   /product="putative membrane protein"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHT4"
FT                   /protein_id="CAE33614.1"
FT                   /translation="MSRFRSTFWRCAFVLAFLASALVAGWLRQAAPSWGHALLYGAMVG
FT                   GIVLCLALLFDDLAWWGTRLVQALKRMRP"
FT   misc_feature    198262..198351
FT                   /note="Signal peptide predicted for BB3122 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.663 between residues 30 and 31"
FT   misc_feature    join(198280..198348,198358..198426)
FT                   /note="2 probable transmembrane helices predicted for
FT                   BB3122 by TMHMM2.0 at aa 7-29 and 33-55"
FT   CDS             complement(198508..199506)
FT                   /transl_table=11
FT                   /locus_tag="BB3123"
FT                   /product="putative exported protein"
FT                   /db_xref="GOA:Q7WHT3"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHT3"
FT                   /protein_id="CAE33615.1"
FT                   /translation="MLGKSAGRWSLGRVAGVAMLCAAWGWSAAAGAEVYPDKPIRLIVP
FT                   FAPGGVTDTGARVVADKLGQRLGQQVVVDNRPGASGNIGTQMAARAAPDGYTLVVGFDG
FT                   TLVINPHIYRDLPFDPVQDFAPVSKIGDAVLIIVTNPKVPAKNLQDLLAYSKSLPAGVS
FT                   YGSAGIGSTPHLAGELLKMRTGANFVHVPYKGGGQAMADLVGGTLPMLYTAVAGAYPFI
FT                   QKGQVQAIAVSSRQRLASLPDVPTVAESGAPGFESSSWIGILAPKGTPQPIVDKLQREL
FT                   HAVVSEPQTRERLAALGISASGNTPAEFGQEIQADLQRYGEIVRAAQIRVD"
FT   misc_feature    complement(198520..199341)
FT                   /note="HMMPfam hit to PF03401, DE Uncharacterized protein
FT                   family, UPF0065, score 1.4e-113"
FT   misc_feature    complement(199411..199506)
FT                   /note="Signal peptide predicted for BB3123 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.996) with cleavage site
FT                   probability 0.715 between residues 32 and 33"
FT   CDS             complement(199519..200445)
FT                   /transl_table=11
FT                   /gene="hmgL"
FT                   /locus_tag="BB3124"
FT                   /product="hydroxymethylglutaryl-CoA lyase"
FT                   /EC_number="4.1.3.4"
FT                   /db_xref="GOA:Q7WHT2"
FT                   /db_xref="InterPro:IPR000891"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHT2"
FT                   /protein_id="CAE33616.1"
FT                   /translation="MQERIHITDVSPRDGLQNQPAQVPTQEKLRLIRLLAEAGVRSVEA
FT                   TSFVSPRAVPQMADAAELVAQVHAALPDLRTSVLVPNLKGLERALAAGAREIAVVLSAT
FT                   ETMNRKNINMGLAQAVSVSEQTLAAARGAGLRTRAYVAVAFDCPFEGATPLADVLRLAA
FT                   AMYAAGADEIVIADTIGSAAPGEVKTRLRALRDVAPLERLAVHFHDTRGMGVANAWAAL
FT                   EAGVRRFDASVGGIGGCPFAPGAAGNLATEDLVLMAERSGFASGISLDGLLRAVDAAQA
FT                   QLQRPLGGRSMAWLRRQAGSAVRVQQP"
FT   misc_feature    complement(199579..200415)
FT                   /note="HMMPfam hit to PF00682, DE HMGL-like, score 2.4e-66"
FT   CDS             complement(200450..201646)
FT                   /transl_table=11
FT                   /locus_tag="BB3125"
FT                   /product="conserved hypothetical protein"
FT                   /db_xref="GOA:Q7WHT1"
FT                   /db_xref="HSSP:1Q7E"
FT                   /db_xref="InterPro:IPR003673"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHT1"
FT                   /protein_id="CAE33617.1"
FT                   /translation="MALQHITVLDLTHMLSGPYGTMLLADLGARTIKVEPPGAGEGTRR
FT                   LLEHDPDYSRDGMGAYYLTLNRNKQSVCVDLKSEAGKAVFLDLVRQADVVFDNFGVGVT
FT                   QRLGIDHASLARVNPRIITCSVTGFGQTGPQTQRPAFDQVVQGMGGGMSITGTPETGPM
FT                   RSGIPIGDLGGGLFGAMGVLAALAERERTGRGQHVDVSMLDAQISMLNYMATMYLMSGQ
FT                   VPAGIGNGHFVHVPYNTYPTSDGHIIIACIGDAFFERFVECIDLPELRDPAYRQQPARF
FT                   AAKARIDAIVGAALQARPTAYWLERLGAARIPCGPVNDFAQALNDAQVRARDMVVEVPL
FT                   KSGERLGMPGNPVKLSAAAPRAFTCPPALGEHTEAVLAELAGYGPAQLERLRAAGAIG"
FT   misc_feature    complement(200867..201433)
FT                   /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score
FT                   4.2e-82"
FT   CDS             201818..203746
FT                   /transl_table=11
FT                   /gene="prpR"
FT                   /locus_tag="BB3126"
FT                   /product="propionate catabolism operon regulatory protein"
FT                   /db_xref="GOA:Q7WHT0"
FT                   /db_xref="InterPro:IPR020441"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHT0"
FT                   /protein_id="CAE33618.1"
FT                   /translation="MPALSAAQPLPRLCFVSYRQIREFAAPVIAEYRNRAAIDVVDGTF
FT                   ADALAVARDRIERNAVDAFISAGANASILRANLQAPVATIQLGGFDLLQALIRARRIAS
FT                   RVGVVMYGQTLPELDAVKELLNIEITQYAYQTPYHARQGFEQLRRDGFQVIVGSSLVVE
FT                   LAEEAGLRGILAYSLASIRQGFEDAIELARVARLEAGRYEQLNGVLHNLQEAVLAVDRD
FT                   HRIIAVNPPMRELLGMPNRTLLGQRLDAVEPELSLQPTLDSGRAERAAVQRYARRDWIA
FT                   NRTPILEYGKLVGAALTLYDAHRIQEADSSLRMQQRRRQSAARHRFDTLLGQSPAFMRA
FT                   VDTARRYAGTDLRVLIQGESGVGKELFAQSIHNASARAHRPFVAINCASLPETLLESEL
FT                   FGYEDGAFTGSRRDGKRGLIEAAHTGTLFLDEIGDMPLSLQTRLLRVLQEGEITRLGAT
FT                   TPVPVDVRVLAATHQPLQELVAQRRFRQDLYYRINALRLPLPPLRERGADIALLATRLV
FT                   ARCLDRLGSPLDAEAALAALLPRLAAYPWPGNVRELENLCERIAVFLLQFDDAEAIRHD
FT                   ALRHECPELFEHPAAMDAPRPERIAQALRQADGNRAQAAAQLGVSRSTLWRWLRQIDAA
FT                   DDGARAT"
FT   misc_feature    202805..203479
FT                   /note="HMMPfam hit to PF00158, DE Sigma-54 interaction
FT                   domain, score 8.5e-124"
FT   misc_feature    202877..202918
FT                   /note="PS00675 Sigma-54 interaction domain ATP-binding
FT                   region A signature."
FT   misc_feature    203453..203482
FT                   /note="PS00688 Sigma-54 interaction domain C-terminal part
FT                   signature."
FT   misc_feature    203603..203713
FT                   /note="HMMPfam hit to PF02954, DE Bacterial regulatory
FT                   protein, Fis family, score 3.4e-08"
FT   CDS             203870..204571
FT                   /transl_table=11
FT                   /gene="marC"
FT                   /locus_tag="BB3127"
FT                   /product="putative multiple antibiotic resistance protein"
FT                   /db_xref="InterPro:IPR002771"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHS9"
FT                   /protein_id="CAE33619.1"
FT                   /translation="MIIEYLQLVGLGLVTMLPVANPLTSTTLLLALGSGFTRDERNRQI
FT                   GRATVYVAAIILASFYAGNAIISSFGISIPGLRIAGGLIVAYIGFTMLFPATSQNEAQA
FT                   QVEMAPDDPHIQVPGAAHTGPRPRDISFVPLALPGTAGPGTIALIISSASTLHSHGGIT
FT                   LIHHFAVITVTLLLALLFWACLRSAERVMRMLGQSGIDAISRVMGFLLICMGVQFIIDG
FT                   VFELIRHPPGA"
FT   misc_feature    203885..204550
FT                   /note="HMMPfam hit to PF01914, DE MarC family integral
FT                   membrane protein, score 3.4e-46"
FT   misc_feature    join(203912..203980,204017..204085,204095..204163,
FT                   204260..204328,204356..204424,204485..204553)
FT                   /note="6 probable transmembrane helices predicted for
FT                   BB3127 by TMHMM2.0 at aa 15-37, 50-72, 76-98, 131-153,
FT                   163-185 and 206-228"
FT   CDS             complement(204760..206331)
FT                   /transl_table=11
FT                   /locus_tag="BB3128"
FT                   /product="putative membrane protein"
FT                   /db_xref="InterPro:IPR001633"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHS8"
FT                   /protein_id="CAE33620.1"
FT                   /translation="MGMTQGHVMSGREANNMTIRYLPVRHRLLFFVVPVLACGLVAAAI
FT                   GYAWKGMHATSMVEHDNAHFLARSLDIAREQLDIVLEARVAPAACSEGDLAALRQRVFR
FT                   SKYVADIARIDNGALRCSAVWGVWRHPHVLPRGGRTVRDGVFLWQNMENPIQPELSGDV
FT                   LASERLAVFTIPGIFDDIVRRAGGQKTTLYSRKQGHVYKVFDASAAEDWQGWGAGFQLV
FT                   RTAAACAPVGGPDICVETTARVDARGAVAVAGLGGMALGAGVGLIVFLWWRRSFGLRAS
FT                   LVDALRKGKIQVAYQPLRVLDSGRMAGVEALARWTHDEVGPISPVTFLGWVEAMGLRQP
FT                   FTRYIVQAALDGMKTRMAGDAPFYLSINVFPEDLEDESFLDFLTQSVRERGLSPGSVVL
FT                   EVTESAVFSTASPSVLFRRFRAAGFRIFLDDFGVGYSNLGNIIRWEVDGIKLDRIFMQS
FT                   LGDFDSAAPVLDQVIEMARQLDLHLVIEGIEVRSQADYIFKRAPHAVGQGWLFGRPGPA
FT                   CALPAA"
FT   misc_feature    complement(204775..205512)
FT                   /note="HMMPfam hit to PF00563, DE EAL domain, score
FT                   6.6e-54"
FT   misc_feature    complement(join(205516..205584,206185..206253))
FT                   /note="2 probable transmembrane helices predicted for
FT                   BB3128 by TMHMM2.0 at aa 27-49 and 250-272"
FT   CDS             206724..206858
FT                   /transl_table=11
FT                   /locus_tag="BB3129"
FT                   /product="putative phage-related protein"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHS7"
FT                   /protein_id="CAE33621.1"
FT                   /translation="MKRRRKEDADERVSWSSYLHVAGIALVIMVCTVELVEWLLARGS"
FT   misc_feature    206778..206846
FT                   /note="1 probable transmembrane helix predicted for BB3129
FT                   by TMHMM2.0 at aa 19-41"
FT   CDS             207019..207231
FT                   /transl_table=11
FT                   /locus_tag="BB3130"
FT                   /product="putative exported protein"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHS6"
FT                   /protein_id="CAE33622.1"
FT                   /translation="MALVSGCSWVGLGDSDRKSTASRVSDECRWNRSGCIYEGSYEADE
FT                   RDYAEAEARRLNQAEMARLRRSAGN"
FT   CDS             complement(207278..208441)
FT                   /transl_table=11
FT                   /locus_tag="BB3131"
FT                   /product="probable acyl-CoA dehydrogenase"
FT                   /db_xref="GOA:Q7WHS5"
FT                   /db_xref="HSSP:1JQI"
FT                   /db_xref="InterPro:IPR006092"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHS5"
FT                   /protein_id="CAE33623.1"
FT                   /translation="MDFRLSDEQEQIKSAIERLCEPFDDEYWFNRDREGGFPHEFHQAL
FT                   AQAGWLGIAMPQAYGGAGLGISDAALMMHTIAATGAGLSGASAVHMNIFGLHPVVVFGT
FT                   AQQKQRWLPPLIAGQDKACFGVTEPNTGLNTLKLKTRAVRQGDHYVVTGQKVWISTAQV
FT                   ANKILLLARTTPIEACTGSEGLSLFYTDLDRAAIEVHEIEKMGRKCVDSNQLFIDNLRI
FT                   PVEDRIGEEGKGFSYILHGLNPERILIAAEAVGLGRAALRKAAGYAREREVFDRPIGKN
FT                   QGVQHPLARSWMELEAAHLMVQKAAWLYDQQQPCGAEANSAKFLGAEACYAACENAIFT
FT                   HGGMGYAKEYHVERYLREAWIPRLAPVSPQMILSFIAEKVLGLPKSY"
FT   misc_feature    complement(207299..207748)
FT                   /note="HMMPfam hit to PF00441, DE Acyl-CoA dehydrogenase,
FT                   C-terminal domain, score 6.5e-58"
FT   misc_feature    complement(207758..208069)
FT                   /note="HMMPfam hit to PF02770, DE Acyl-CoA dehydrogenase,
FT                   middle domain, score 1.4e-11"
FT   misc_feature    complement(208073..208429)
FT                   /note="HMMPfam hit to PF02771, DE Acyl-CoA dehydrogenase,
FT                   N-terminal domain, score 7e-12"
FT   CDS             complement(208478..209647)
FT                   /transl_table=11
FT                   /locus_tag="BB3132"
FT                   /product="conserved hypothetical protein"
FT                   /db_xref="GOA:Q7WHS4"
FT                   /db_xref="HSSP:1PQY"
FT                   /db_xref="InterPro:IPR003673"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHS4"
FT                   /protein_id="CAE33624.1"
FT                   /translation="MRNAADTPAAMAAGSALDGIRVVDLSRVLSGPYCTQILADHGADV
FT                   VKIEPPGGDETRAWGPPFAGEVAAYYQGINRNKRGAWLDLSSEAGRAALLAQLDGADVL
FT                   VENFKCGTMERWGLGFEVLSGRFPRLIHCRVSGFGADGPMGGMPGYDAAIQAMSGIMSV
FT                   NGDPGGEPTRVGVPIVDMVTGMNAAIGVLLALQERQRSGRGQFVDIALFDCALSILHPH
FT                   TASHFAAGVTPGRTGNAHPNITPYDIFPTATDPLFLAVGNDRQFRILCEALGAAALADD
FT                   PRYASNGQRCANRQALTRSLAALLSRHAAQGLAERLIRAGVPCSSVLDIPQALRHPQAV
FT                   HREMVVQRDGYAGVASPVKLGRTPARYRMPPPRFGQHQLELDFPVASGR"
FT   misc_feature    complement(208838..209407)
FT                   /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score
FT                   3.1e-61"
FT   CDS             complement(209644..211077)
FT                   /transl_table=11
FT                   /gene="gabD"
FT                   /locus_tag="BB3133"
FT                   /product="succinate-semialdehyde dehydrogenase [NADP+]"
FT                   /EC_number="1.2.1.16"
FT                   /db_xref="GOA:Q7WHS3"
FT                   /db_xref="HSSP:1A4S"
FT                   /db_xref="InterPro:IPR016162"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHS3"
FT                   /protein_id="CAE33625.1"
FT                   /translation="MRTITSLIDGQWAGGAGDSENINPSDLSAPVCLVAQASAQQAAQA
FT                   VEAARRAQPGWAATGLAARAQILKDIGRGIVANSQQLAHTLASEQGKTLPEARGEVQRA
FT                   ADIFDYYAGEVFRLGGEMFPSIRAGVEVEISREPLGVVALITPWNFPIAIPAWKTAPAL
FT                   ACGNAVVLKPSEFTPATAVMLAEIIRAAGVPDGVFNLVLGTGADVGQVLTGHPAVAGVS
FT                   FTGSSATGRKIAASAVAGHKKLQMEMGGKNPLVVLDDADLEIALACALDGAFHATGQRC
FT                   TASSRLIVTPGIYNRFVQELAQRVMALNVGHALDERSQIGPVSNGAQFDKDLSYIALAR
FT                   DEAQRVVGGAALQRAQRGYYLQPCLALDVSLDARIAREEVFGPLACVLRAQDYEHALAI
FT                   ANDTEYGLSAGICTQSLKHATHFRRHVQSGLAMVNMPTSGVDFHVPFGGRGASSYGSSE
FT                   QGHYAREFFTSLKTSYIRP"
FT   misc_feature    complement(209650..211047)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF00171, DE Aldehyde dehydrogenase
FT                   family, score 5e-167"
FT   misc_feature    complement(210223..210258)
FT                   /note="PS00070 Aldehyde dehydrogenases cysteine active
FT                   site."
FT   misc_feature    complement(210319..210342)
FT                   /note="PS00687 Aldehyde dehydrogenases glutamic acid active
FT                   site."
FT   CDS             complement(211088..212770)
FT                   /transl_table=11
FT                   /gene="ilvB"
FT                   /locus_tag="BB3134"
FT                   /product="acetolactate synthase large subunit"
FT                   /EC_number="2.2.1.6"
FT                   /db_xref="GOA:Q7WHS2"
FT                   /db_xref="HSSP:1JSC"
FT                   /db_xref="InterPro:IPR012000"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHS2"
FT                   /protein_id="CAE33626.1"
FT                   /translation="MSKYLAGHLVADFLAHNGVETVFGIISVHNIPMMDGITLNKRIRM
FT                   VMTRGETGAAHMADGLARATGAMGVVISSTGPGASNTVPGLVEARFAGTPLLHITGQSA
FT                   TAHLGRDTGAVHDVPDQLGMLSAVSKQAYRVRSAEETLDVLKQAWTQAMSAPAGPVSVE
FT                   IPIDIQRTPVARPADSQAYRVAAPRALAPSPAALDQLAQKVRAARRPLVWAGGGARAAG
FT                   KELAALVELGFGMVTSWNGHGVVSDDHPANLGALNGPGSPAVQALYEQADLLLVVGSRL
FT                   RGHETLEHKLALPQNLVRIDVDPAAQARGYASTLLVCGDAAVTLQGLLERLREQGPDID
FT                   AAFTQAVREAKPKAAEHFRQTLGPYKDFASQLRAVMPASAVFARDITLSNSTWGHRLFP
FT                   LHAQSQNIYPVGAGIGQGLQLGIGAAIGSKDRKVVLLTGDGGFFFNMTEMWTAVQEAAD
FT                   IVMIVMNDGGYGVIKHMQDAMCEGRYAHSSLLAPDLLKLAELAGIPAWRVERAADFGAT
FT                   VAQALATRGPTLVEVDMNAIGPFPPYYPYSAMISAAREQAGAR"
FT   misc_feature    complement(211175..211696)
FT                   /note="HMMPfam hit to PF02775, DE Thiamine pyrophosphate
FT                   enzyme, C-terminal TPP binding domain, score 1.2e-19"
FT   misc_feature    complement(211727..212194)
FT                   /note="HMMPfam hit to PF00205, DE Thiamine pyrophosphate
FT                   enzyme, central domain, score 1.6e-15"
FT   misc_feature    complement(212240..212767)
FT                   /note="HMMPfam hit to PF02776, DE Thiamine pyrophosphate
FT                   enzyme, N-terminal TPP binding domain, score 2.8e-32"
FT   CDS             complement(212783..213757)
FT                   /transl_table=11
FT                   /locus_tag="BB3135"
FT                   /product="putative exported protein"
FT                   /db_xref="GOA:Q7WHS1"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHS1"
FT                   /protein_id="CAE33627.1"
FT                   /translation="MKIRFKTLVAAGWLGALAFGTAVAQGGYPNQPIRLMVGYSPGGSV
FT                   DIVAREYAQHLGRLLDQSVVVENRGGASGTIAAQAVARAPADGYTLFFTASPTVTITPA
FT                   LQKTPFDPVKDFQPVASVVSYTNVLLVNAQAPYQDIQALVAAAKADPGKLTYGSAGVGA
FT                   SNHLSGKLFEDNADIKLSHVPYKGNAPAQSDLIADRITMLFDLNTTAKSLVESGRVKAL
FT                   AVTSGQRNPMFKDVPTMAEAGYPNFIFDGWLGILAPAGTPEAVVKTLADATRKILADKA
FT                   FSERMQASGYTITASSPQELGAIVAREGKQFQDLAERANLRQF"
FT   misc_feature    complement(212795..213616)
FT                   /note="HMMPfam hit to PF03401, DE Uncharacterized protein
FT                   family, UPF0065, score 1.1e-97"
FT   misc_feature    complement(213686..213757)
FT                   /note="Signal peptide predicted for BB3135 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.972 between residues 24 and 25"
FT   CDS             complement(214118..215083)
FT                   /transl_table=11
FT                   /locus_tag="BB3136"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2103"
FT                   /db_xref="GOA:Q7WHS0"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHS0"
FT                   /protein_id="CAE33628.1"
FT                   /translation="MKNVLWMALLASVLSEGALAAEFPTHPVTLVVPLAAGSTADILAR
FT                   AIQPGLSKALGQTVVVENRPGAGGQLAMSYVAKQAADGYTIVMGSNGTWAINLGLYEKL
FT                   PYRPVEDFAPVAYLAGGSNILIVKPSSPYTSVAALIAAMKAAPGKLTYSSGGNGTTHHL
FT                   SSELLKSLTDTQAMHIPYGGAPQGVSAVMAGETDFGFYNTPSVSSLVKERKLRALAATG
FT                   TIRTPMLPEVPTMMEAGVAGYVMSVDFGLLAPAGTPDDVVLKLNRAANAAMAQPKLQET
FT                   LKNYGFEVFEQGTPGDMAKRVNADIDKWVPIVRQAKAKVD"
FT   misc_feature    complement(214130..214957)
FT                   /note="HMMPfam hit to PF03401, DE Uncharacterized protein
FT                   family, UPF0065, score 3.2e-104"
FT   misc_feature    complement(215024..215083)
FT                   /note="Signal peptide predicted for BB3136 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.999 between residues 20 and 21"
FT   CDS             complement(215221..216126)
FT                   /transl_table=11
FT                   /locus_tag="BB3137"
FT                   /product="putative lysR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2102"
FT                   /db_xref="GOA:Q7WHR9"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHR9"
FT                   /protein_id="CAE33629.1"
FT                   /translation="MMDAIESVSLRQLRALVSIGDTASFTGAAEQLGMSQPSVSHLIRR
FT                   LEAEVGQTLVVRGREVTLTRQGQALADIARRAILSIDGAVRESRDQSALKSGSVSVAVG
FT                   HVSAATLLPRILVAFNQRHPNIELIVVDCVVEQIRNKLLSHEADVGLGAVVGSDDSRLS
FT                   TELLWDGGVSLFMRDDHYLADREAIDAAILAELPCIQLNPNAPPWLVISRLLVANGIHP
FT                   RVDQRVVLVSTAVGMIQAGMGVAMLPHAAAAQAPRGVRAVPIRNPFLSWPISLVRLSNH
FT                   PLSPAAQAFAAIARDVLRRF"
FT   misc_feature    complement(215230..215853)
FT                   /note="HMMPfam hit to PF03466, DE LysR substrate binding
FT                   domain, score 3.4e-42"
FT   misc_feature    complement(215923..216099)
FT                   /note="HMMPfam hit to PF00126, DE Bacterial regulatory
FT                   helix-turn-helix protein, lysR family, score 2.8e-21"
FT   misc_feature    complement(215965..216057)
FT                   /note="PS00044 Bacterial regulatory proteins, lysR family
FT                   signature."
FT   CDS             216222..218471
FT                   /transl_table=11
FT                   /locus_tag="BB3138"
FT                   /product="hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2101"
FT                   /db_xref="InterPro:IPR005829"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHR8"
FT                   /protein_id="CAE33630.1"
FT                   /translation="MPHSDYARHLMGSATIDPTGAFEAGSFASFTLTYTAGYFGIDDTG
FT                   SIKIVHRFASDMGKPQFTDPQGWNYTTVEAGNGAVLHVEYDGKRNIRPWDKTLFIRVVR
FT                   GYLEEGEQIIVRFGDTRQGSPGMRVQTFHEPTFEFKVLVDAFATYNYVEIEASPTISVV
FT                   AGPPVRYKAVLPSLSLAGQPLRLGFKGEDKWGNPSDQAQGRYTLRSNLRMARMPESFEM
FT                   AAGAYAHAIEGIVAAETGDLRLEVLHGDRVVARSNPCRVAAQAARNHYWADLHGQSEET
FT                   IGTNSAEELILFARDRAFLDAMSHQGNDFQITQEFWEHLNTLTARYDEPGRFVIFPGYE
FT                   WSGNTGLGGDRNVLYLHEGRPLHRSSHALVDDLSDLDSDANSADALFQAIKDEDAVVFA
FT                   HIGGRYADITLSHDPRIERSIEIHSDWGTFEWLLEDAFKQGYRVGILANSDGHKGRHGA
FT                   SHPGASLFGAYGGLSCLIADTLSRQSLAECLRQRRHYATTGCRAYLDVAAHFDAPARRY
FT                   AEDPRLAPDAASTQVRSADMGAILACDTDMVEFEFDLATEAPIESVEVRNRMDVVQTLR
FT                   PFKPADLGRRIRIVWEGSEYRGRGRQTVWDGSATLQDNAFVDPKPINFWNLDKTLQQPQ
FT                   PNHLCWQSLTTGGFSGVDVMLEDAGRGTLCIDTDLIQARIPVADIGLEPLVFENGGIRR
FT                   RLQVFRLPDENPACHLKARVQVPLHTEQDNALYLRATTEDGFFIYSSPIYIERKA"
FT   misc_feature    217614..217691
FT                   /note="PS00217 Sugar transport proteins signature 2."
FT   CDS             218717..220201
FT                   /transl_table=11
FT                   /locus_tag="BB3139"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2100"
FT                   /db_xref="GOA:Q7WHR7"
FT                   /db_xref="InterPro:IPR002878"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHR7"
FT                   /protein_id="CAE33631.1"
FT                   /translation="MCCQAALAPGCADAGDNRVSNILAIGVHLPRLRLSRRAMANALGW
FT                   LSGGAGAGKGSRTLAYWDEDSVTMAVAAARHALARQAAPAIDALQFASTTPPFAEPQNA
FT                   AFVRAALRLPATTLTQDVHGTPRAGLLALHMALESGTRTLVAAADLPTALPGSTAEARA
FT                   GDGGAAVLTGDEPGLLRYLGGASLSAPFTDRYRAAGHDYPQEWEERWLREAGYLELVHD
FT                   AIGRALQAASLRPEQVDHFVLPCPVPGVAAAVAAKAGLGQARLASALAENCGDTGAAHA
FT                   FVMLGRALEDAAPGQKVLVAQFGQGATALLFEADEAVAGLAAPVSPALQGGLAEDNYMK
FT                   LLAFRGRIAWDRGLRGRFLVNEALSTAWRNADALLGFVAGRCRETGQVQFPPTRLAATG
FT                   GFHLDTQEPWPLADRGGRIATFTADLLAFSPCPPNCYGLVDIDGGGRVLMEFTDPQASQ
FT                   LEAGAAVAFALRIKDLDPQTGYRRYFWKALAAPTAD"
FT   CDS             220212..221408
FT                   /transl_table=11
FT                   /locus_tag="BB3140"
FT                   /product="putative thiolase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2099"
FT                   /db_xref="GOA:Q7WHR6"
FT                   /db_xref="InterPro:IPR002155"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHR6"
FT                   /protein_id="CAE33632.1"
FT                   /translation="MATGIKDRVAILAMGCSRFGERWDVGQEELMVEAYAEALASAGIE
FT                   PRAIEAAWYSSHYDDIGAGKAGTPMAMALRLPDIGVTRVENFCAGGTEAFRGAVYAVAS
FT                   GAADIALALGVEKLKDTGFAGLPLASRGTLAPMYLPTHSNPGNFAQLARAYQARHGVSR
FT                   EDLKAAMAHTSVKSHANALHNPKAHLRKAISREQAAGAPLVADPIGLFDCCPVSDGAAC
FT                   AIVTTPEIARSLNRGPLVLVKAIQLATSNGWELQQSDWDGSYVHTTRVAARKAYAEAGI
FT                   DDPRAQLSLTELHDCFSITELVTLEDIGLAEPGTAWRGMLDGRFDADGALPCQIDGGLK
FT                   CFGHPVGASGLRMLYEAWLQLSGRAGARQLPAPSLALTHNLGGAPAQNVCSITILGAA"
FT   misc_feature    220911..221384
FT                   /note="HMMPfam hit to PF02803, DE Thiolase, C-terminal
FT                   domain, score 0.001"
FT   CDS             221481..222800
FT                   /transl_table=11
FT                   /locus_tag="BB3141"
FT                   /product="putative acyl-CoA ligase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2098"
FT                   /db_xref="GOA:Q7WHR5"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHR5"
FT                   /protein_id="CAE33633.1"
FT                   /translation="MLHPEIELLDRDGILKIQRERLARLGQRLQHSPQWREHFASVGMT
FT                   PGDLASPDAFEHLPFLQKADLRQQYPYPFLTVPLEDVERFVATSGTTGLPVMFGLTRRD
FT                   LHELLPSQTARLLAAAGVRRGARAYQGYGYGLWIGGLALDQGFKEMDCVNFPLGPGRGD
FT                   LAARWMRDHAYEVASMSPLWLMSLAQAARAQGINPKTDWALRTAILGGQSVSAEFRAQL
FT                   EAEMPEGFVSHNIYGTTEAGGPILAISTPYTHADDELHLINEDTVLTEILDPVTLKPVS
FT                   EGEVGEIVITTLTKEASPVIRWRTHDLVRLSSHPYDCPSGRRGMRKIGRIIGRSDDMIK
FT                   FKGVIVFPSQIEDVITGVAGVVKEAWQIYIDKECMTIGTMTVAIEASAQAGRPAEQLSH
FT                   EVGREIHARLGMKVCVECHPEGTLPRYEAKAVRVLHRPEA"
FT   misc_feature    222720..222737
FT                   /note="PS00190 Cytochrome c family heme-binding site
FT                   signature."
FT   CDS             222797..223684
FT                   /transl_table=11
FT                   /locus_tag="BB3142"
FT                   /product="putative esterase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2097"
FT                   /db_xref="GOA:Q7WHR4"
FT                   /db_xref="InterPro:IPR013094"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHR4"
FT                   /protein_id="CAE33634.1"
FT                   /translation="MTARDPLAAIRARLAEVTASWQAAESLARIRASFADYLAEVGPRG
FT                   AAMARPRPQPLAPALAGAWIGQGARRALYCHGGGFQIGGIASHASLIARLAEAGQARIL
FT                   AVEYRLAPEHRYPAAIDDAFAAYQWLLANGGAPAAIIGDSAGGALALQTAQRARDAGLP
FT                   LPRSLVLLSPWLDLSMQGRSYVELAEQDIFSKPAQLRAMARSYLGRLGPPPDAPPASPL
FT                   WDDLSGLPPIVVHAGAHDITLDDSHTLAARVRAAGGQVQLQVFPGMCHHFQIYEALAEA
FT                   RESIDALGRHLRQD"
FT   CDS             complement(223715..224887)
FT                   /transl_table=11
FT                   /locus_tag="BB3143"
FT                   /product="putative fatty-acyl-CoA racemase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2096"
FT                   /db_xref="GOA:Q7WHR3"
FT                   /db_xref="HSSP:1PQY"
FT                   /db_xref="InterPro:IPR003673"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHR3"
FT                   /protein_id="CAE33635.1"
FT                   /translation="MMAQGEGMAPALQGLRIIEMVGLGPAPFAAMMLADHGADVVRVHA
FT                   AHRKGDFPLLDSRFDVLARGRRSLALDLRAPGASDLLLELVGAADGLIEGFRPGVMERM
FT                   GLAPEACLRRQPRLVYGRMTGWGQQGPLARQAGHDLNYLGLTGALHAIGPSDRPPPVPL
FT                   NYVADFGGGGMLLAFGMLAALLAVRGGAPGQVVDAAMVDGAGLLASMFWGFRAGGGWSD
FT                   RREGNLLDGGAYFYATYACADGRFLAVACVERRFHDLLVERLGLDPAVYTHDRDPAQWP
FT                   ALRARLAALFATRPRDHWAALFEDSDACVTPVLDWREAAHHPHAAARAGYIDVEGVTQP
FT                   APAPRLSATPARQPAAAPAVGAHSVEVLHEWGLAPERVASALDSGLIVQA"
FT   misc_feature    complement(224108..224683)
FT                   /note="HMMPfam hit to PF02515, DE CAIB/BAIF family, score
FT                   1e-60"
FT   CDS             complement(224884..225198)
FT                   /transl_table=11
FT                   /locus_tag="BB3144"
FT                   /product="putative ferredoxin"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2095"
FT                   /db_xref="GOA:Q7WHR2"
FT                   /db_xref="HSSP:1E9M"
FT                   /db_xref="InterPro:IPR018298"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHR2"
FT                   /protein_id="CAE33636.1"
FT                   /translation="MTTIIFIASNEARHVVQADDGLSLMECARRANVPGIAAECGGACT
FT                   CATCHVHVGQEWMQAVGEPGDMERDMLDFANDVRAESRLSCQITVAPALEGLTVRVAPQ
FT                   "
FT   misc_feature    complement(224923..225180)
FT                   /note="HMMPfam hit to PF00111, DE 2Fe-2S iron-sulfur
FT                   cluster binding domain, score 4.7e-07"
FT   misc_feature    complement(225046..225063)
FT                   /note="PS00190 Cytochrome c family heme-binding site
FT                   signature."
FT   misc_feature    complement(225049..225081)
FT                   /note="PS00814 Adrenodoxin family, iron-sulfur binding
FT                   region signature."
FT   CDS             complement(225220..225942)
FT                   /transl_table=11
FT                   /locus_tag="BB3145"
FT                   /product="putative 3-oxoacyl-CoA or-ACP reductase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2094"
FT                   /db_xref="GOA:Q7WHR1"
FT                   /db_xref="HSSP:1Q7B"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHR1"
FT                   /protein_id="CAE33637.1"
FT                   /translation="MLRHALVTGGANGIGAATVAQLCRDGLRVTFCDRDAQAGASVAQA
FT                   TGARFVALDATDAEAVAGFCAGAAPFDILVNNVGADQHAFFSRTTPQDWRALLAVNLES
FT                   AFAFTLGVLPGMQAARFGRIVNVSSEAGRLGSRGGAVYAAAKAGLLGFTRSIARENARY
FT                   GVTANAVLPGPVDTPMLARAVDVAGAQMRADLEALTLLRRLGRPEEVAAAIAFLCSEAA
FT                   GFITGEALGVSGGMGCGA"
FT   misc_feature    complement(225235..225942)
FT                   /note="HMMPfam hit to PF00106, DE short chain
FT                   dehydrogenase, score 1.6e-66"
FT   misc_feature    complement(225472..225558)
FT                   /note="PS00061 Short-chain dehydrogenases/reductases family
FT                   signature."
FT   CDS             complement(225942..226760)
FT                   /transl_table=11
FT                   /locus_tag="BB3146"
FT                   /product="enoyl-CoA hydratase/isomerase-like protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2093"
FT                   /db_xref="GOA:Q7WHR0"
FT                   /db_xref="HSSP:1DCI"
FT                   /db_xref="InterPro:IPR001753"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHR0"
FT                   /protein_id="CAE33638.1"
FT                   /translation="MTMTTANPETWIGEGPVLLDYADHVARITLNRPDAANGMNIEFMK
FT                   ALHEAVMRCHREPDVRVVLLRGAGKHFCAGGDVREFASKGEGLGDFLREVTAWLQMAIG
FT                   ALIRLDAVVVAQVQGYAAGGGGLGLVCAADIVVAAQGARFLAGATRVGMAPDAGSSVIL
FT                   PHLIGFRRAMEMMLSNRTVGADEALEMGLVNQVVADAELDESAARLAATYAAGAPLAQA
FT                   ATKRLLWNTLQVERALPEEARTVSTLSATADSREGLAAVIGKRQPVFRRH"
FT   misc_feature    complement(226167..226685)
FT                   /note="HMMPfam hit to PF00378, DE Enoyl-CoA
FT                   hydratase/isomerase family, score 1e-42"
FT   CDS             complement(226765..227292)
FT                   /transl_table=11
FT                   /locus_tag="BB3147"
FT                   /product="putative dioxygenase component"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2092"
FT                   /db_xref="GOA:Q7WHQ9"
FT                   /db_xref="InterPro:IPR000391"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHQ9"
FT                   /protein_id="CAE33639.1"
FT                   /translation="MTARPETRPAADDLQALDELTLHHRVSQFLYHEARLQDTHDYQGW
FT                   ESLWEDDAIYWIPANGDDIDPEQKMSVIYDNRSRIRVRIEQLLTGRRHTQTPRSALARL
FT                   ISNIEIVDVAGQEVTALANVLIYEDNLRGETHWAARNEYRLRLVDGAFRLVRKKIALVN
FT                   GAKPIFTLSFLV"
FT   misc_feature    complement(226786..227199)
FT                   /note="HMMPfam hit to PF00866, DE Ring hydroxylating beta
FT                   subunit, score 4.4e-25"
FT   CDS             complement(227298..228563)
FT                   /transl_table=11
FT                   /locus_tag="BB3148"
FT                   /product="putative dioxygenase hydroxylase component"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2091"
FT                   /db_xref="GOA:Q7WHQ8"
FT                   /db_xref="HSSP:1EG9"
FT                   /db_xref="InterPro:IPR017941"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHQ8"
FT                   /protein_id="CAE33640.1"
FT                   /translation="MRAMSSIRNEIDYRALIEPTRINSRLYVDPEIFQEELDKIWHRTW
FT                   VYVGHVSEVPNKNDYVTKSIGTTPVLLLRDRDGEIRLLLNKCPHRGNQLCAYKEGNRST
FT                   FTCPYHSWTFSNTGDLMGYALADGYEGASKAGVGLGKVARIGIYRGFVFGSFAETGPSL
FT                   DEHLGGAKAAIDQLCDNSPNGELDLRAGFLQHRAKANWKFMLENETDGYHPGFVHGSIF
FT                   QVTNSPIANLYGKDSTALTRDYGNGHTEFDLRPEWRRIDKPLYWFGSSVERMADYAVAM
FT                   DQAYGAERARQIMIDGSPHTMIFPNLFIAEIQIFVLQPVSVEETIQHVTAVQFKDAPDI
FT                   NRRLRQQTMGSVGPAGLLLADDTEMYERNHRGAKIRDPEWLMLTRGLHRERKDENGYTV
FT                   GHSTDEVPQRGIWRHYFKLMQE"
FT   misc_feature    complement(227304..228077)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF00848, DE Ring hydroxylating alpha
FT                   subunit (catalytic domain), score 6e-11"
FT   misc_feature    complement(228117..228203)
FT                   /note="PS00402 Binding-protein-dependent transport systems
FT                   inner membrane comp. sign."
FT   misc_feature    complement(228135..228434)
FT                   /note="HMMPfam hit to PF00355, DE Rieske [2Fe-2S] domain,
FT                   score 9.8e-24"
FT   misc_feature    complement(228234..228305)
FT                   /note="PS00570 Bacterial ring hydroxylating dioxygenases
FT                   alpha-subunit signature."
FT   CDS             228915..230054
FT                   /transl_table=11
FT                   /locus_tag="BB3149"
FT                   /product="putative ABC-transporter substrate-binding
FT                   protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2090"
FT                   /db_xref="InterPro:IPR001828"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHQ7"
FT                   /protein_id="CAE33641.1"
FT                   /translation="MNTSKAIVAGLLALGCALPVAAEIRLGASVSATGPAGILGDPEAR
FT                   TLELLVQELNARGGIKGEQIKLVLYDDGGDANKARTFATRLVEDDEVQAIIGGTTTGTS
FT                   MSILSVAEDAKVPFISLAGAIDIIDPVKPYTFKTPHTDRMACQKVFADMRKNGWTKVAL
FT                   IGSTDGFGASMQAQCKAVAGQYGIELVGSETYEPKDADMTAQLTKIRGIPGVQAVLNPG
FT                   FGQSAAVLARNYRQLGMSLPFYASHGVASQGYIDLAGADVVEGFRLPGTALLVADLLPA
FT                   SDPQAAPSIAYKKAFEAKTGAPVGTFGGYAHDAFLILVDALNRADSTKPTAIRDAIEKT
FT                   SKLAGTTGVYTFSPTDHLGLDLSAFRVLEIRGGKWKVVD"
FT   misc_feature    228915..228980
FT                   /note="Signal peptide predicted for BB3149 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.856 between residues 22 and 23"
FT   misc_feature    228930..228962
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    228933..229001
FT                   /note="1 probable transmembrane helix predicted for BB3149
FT                   by TMHMM2.0 at aa 7-29"
FT   misc_feature    228987..230045
FT                   /note="HMMPfam hit to PF01094, DE Receptor family ligand
FT                   binding region, score 0.001"
FT   CDS             230132..231004
FT                   /transl_table=11
FT                   /locus_tag="BB3150"
FT                   /product="putative ABC-transporter permease component"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2089"
FT                   /db_xref="GOA:Q7WHQ6"
FT                   /db_xref="InterPro:IPR001851"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHQ6"
FT                   /protein_id="CAE33642.1"
FT                   /translation="MSEFMQFIFSGVTVGAVYALVALGFAIIFNATGVVNFAQGEFVML
FT                   GGMITVFAHGAGLALPLAALLAIAVTAATGVALNRLAIEPARGAPVVSLIIITIGASIF
FT                   IRGAVQSLFGKQIHSLPAFSGDDPIHVLGATILSQSLWMIGGAVAVFIVLWLFFTRTLI
FT                   GRAVLATSNNRLAARLVGINTRFIMTLSFALSAAIGALAGVLITPITLTSYDVGLTLAL
FT                   KGFAAAMLGGMGSPKGALAGGILLGLLESLTAGYLSSQYKDAAAFLTILAVLFFMPQGL
FT                   FGHKSTDRV"
FT   misc_feature    230141..230989
FT                   /note="HMMPfam hit to PF02653, DE Branched-chain amino acid
FT                   transport system / permease component, score 5.8e-36"
FT   misc_feature    join(230150..230218,230297..230365,230402..230470,
FT                   230537..230605,230699..230767,230843..230902,
FT                   230921..230980)
FT                   /note="7 probable transmembrane helices predicted for
FT                   BB3150 by TMHMM2.0 at aa 7-29, 56-78, 91-113, 136-158,
FT                   190-212, 238-257 and 264-283"
FT   CDS             231008..231964
FT                   /transl_table=11
FT                   /locus_tag="BB3151"
FT                   /product="putative ABC-transporter permease component"
FT                   /note="ortholog of Bordetella pertussis (BX470248)
FT                   BP2088+BP1648"
FT                   /db_xref="GOA:Q7WHQ5"
FT                   /db_xref="InterPro:IPR001851"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHQ5"
FT                   /protein_id="CAE33643.1"
FT                   /translation="MRISSKHWTLIVLAALIAIAPLFFPSGYYFRVGSTIFVNALAVTG
FT                   IVILTGYAGQISLGHAGFAGIGGYACALAPVHLGLPSALSVVLGAAVSGALAWLVGRPI
FT                   LRLKGYYLGVASLGFGILVAMVLNNERQLTKGPDGIAVPDPGLRSLLKGWGLDLSNGQF
FT                   WYAMTGIALVIGAWLALNLYHSPTGRALRALHGSEIAAGTVGIDVAGAKLKAFVVSAVY
FT                   ASVSGSLLALQNRFITPDIAGFMHSIEMVTMAVLGGVGSVAGAIFGASLLTLLPQVLTV
FT                   FADYEPLILGLTMMLVMIFLPEGLVPSIMRTIRGRKK"
FT   misc_feature    231008..231133
FT                   /note="Signal peptide predicted for BB3151 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.999) with cleavage site
FT                   probability 0.795 between residues 42 and 43"
FT   misc_feature    join(231035..231094,231113..231181,231239..231307,
FT                   231326..231394,231488..231556,231758..231826,
FT                   231869..231937)
FT                   /note="7 probable transmembrane helices predicted for
FT                   BB3151 by TMHMM2.0 at aa 10-29, 36-58, 78-100, 107-129,
FT                   161-183, 251-273 and 288-310"
FT   misc_feature    231080..231937
FT                   /note="HMMPfam hit to PF02653, DE Branched-chain amino acid
FT                   transport system / permease component, score 2.3e-16"
FT   CDS             231961..232743
FT                   /transl_table=11
FT                   /gene="livG"
FT                   /locus_tag="BB3152"
FT                   /product="high-affinity branched-chain amino acid
FT                   transport, ATP-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1649"
FT                   /db_xref="GOA:Q7WHQ4"
FT                   /db_xref="HSSP:1G9X"
FT                   /db_xref="InterPro:IPR003439"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHQ4"
FT                   /protein_id="CAE33644.1"
FT                   /translation="MSLLEIHGLGITFGGLRAVHDVAFSVEPGEIVSVIGPNGAGKTTL
FT                   FNMISGIYRPGAGRVVLDRDDVTGMAPFRLARRGMSRTFQNLQIFQNMTVLENAIAGFH
FT                   LQEQGALLSDLFNLRASQARARRAEEGARALLQRVGLERAAEREAASLSYGSLKRLEIA
FT                   RALALQPKVLLLDEPAAGCNAVETEEIDHLIAEVAATGVAILLVEHDMKMVMRISSHIV
FT                   VLDHGEKIAEGPPDAISRDPAVIAAYLGTDSQPGDRPC"
FT   misc_feature    232045..232641
FT                   /note="HMMPfam hit to PF00005, DE ABC transporter, score
FT                   8.3e-50"
FT   misc_feature    232066..232089
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             232737..233438
FT                   /transl_table=11
FT                   /gene="livF"
FT                   /locus_tag="BB3153"
FT                   /product="high-affinity branched-chain amino acid
FT                   transport, ATP-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1650"
FT                   /db_xref="GOA:Q7WHQ3"
FT                   /db_xref="HSSP:1JI0"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHQ3"
FT                   /protein_id="CAE33645.1"
FT                   /translation="MLTVQGLRSCYGRIEVLHGIDLQVDSGEIVTVVGANGAGKTTLLR
FT                   CLSGVQPVSAGAITFRGEALAAVPAHRRLARGLAHSPEGRQIFTNLSVEENLRLGAYLY
FT                   ADDRVERDMDDAFQMFPILREKRHLAAGGLSGGQQQMLAMARALMGRPSCLLLDEPSMG
FT                   LAPIIVQQIFDVIRGLKALGVTVLLIEQNAYGALQIADRGYVMETGNITMQGAASALIA
FT                   DPRIRAAYLGI"
FT   misc_feature    232815..233363
FT                   /note="HMMPfam hit to PF00005, DE ABC transporter, score
FT                   1.3e-50"
FT   misc_feature    232836..232859
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    233136..233180
FT                   /note="PS00211 ABC transporters family signature."
FT   CDS             233677..234279
FT                   /transl_table=11
FT                   /locus_tag="BB3154"
FT                   /product="putative TetR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1651"
FT                   /db_xref="GOA:Q7WHQ2"
FT                   /db_xref="InterPro:IPR012287"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHQ2"
FT                   /protein_id="CAE33646.1"
FT                   /translation="MARTRSADYENIRDTIIERAAAMFARQGYSETSIGDIARACECSK
FT                   SRLYHYFDSKEAVLRDMLTTHVDSLLERCRQVLYGSNEPKTRFLQIVKLFLEIYATSRD
FT                   RHVVMLTCLDALPEDQRKALIAKQRELIAYVRDALLQLRPDMAANRTLAHVDTMLFFGM
FT                   INWTYTWYKADGSVSPDALAERTVQLFLDGYLNLPSA"
FT   misc_feature    233722..233862
FT                   /note="HMMPfam hit to PF00440, DE Bacterial regulatory
FT                   proteins, tetR family, score 1.5e-13"
FT   CDS             complement(234255..235484)
FT                   /transl_table=11
FT                   /locus_tag="BB3155"
FT                   /product="putative oxidoreductase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1652"
FT                   /db_xref="GOA:Q7WHQ1"
FT                   /db_xref="HSSP:1D7Y"
FT                   /db_xref="InterPro:IPR013027"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHQ1"
FT                   /protein_id="CAE33647.1"
FT                   /translation="MAMDSIAIIGAGQAGAALAARLRQAGFQGGIDVFGAESAPPYQRP
FT                   PLSKKYLAGDWEQERLWLRPAQFWREQGIALHLGGTVEALDLASRTLRCGGRRHGWRKL
FT                   ALTTGAALRPLPAAFAGRSNVFELRNLADVQRLQPAFLAGRRLLVLGGGYIGLETAAVA
FT                   AQAGLSVQVVERASRVLERVACPATAAAIRALHQRHGVLIHEGRTVVGTEGDEALTGVE
FT                   LDNGLRIACDLVVAGVGVAPQTALAEAAGIDCDDGILVDAYGRTSAPDVWAAGDCARFV
FT                   LGGEPARLESVQNAIDQAEAVADDMLGQGRPYQPVPWFWSDQYDMKLQIVGLNRGYDAV
FT                   VSHASAKGESHWYFRADRLISVDALNDGRAYMVGKKLLEAGRAVGRGEVERPGFEPMQL
FT                   LRDQAEGRLR"
FT   misc_feature    complement(234630..235472)
FT                   /note="HMMPfam hit to PF00070, DE Pyridine
FT                   nucleotide-disulphide oxidoreductase, score 5.4e-70"
FT   misc_feature    complement(235428..235484)
FT                   /note="Signal peptide predicted for BB3155 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.857) with cleavage site
FT                   probability 0.812 between residues 19 and 20"
FT   CDS             235634..236032
FT                   /transl_table=11
FT                   /locus_tag="BB3156"
FT                   /product="putative translational inhibitor"
FT                   /db_xref="HSSP:1NQ3"
FT                   /db_xref="InterPro:IPR006175"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHQ0"
FT                   /protein_id="CAE33648.1"
FT                   /translation="MPRTALNPDTVFDSLQYGFSQGLIVTGQRRIMLSGQVGVDAQERT
FT                   VGPGLNEQTDAALDNIERVLAAAGAAMRHIIMLRIYICEDARGDQEVVADALRRRFPDN
FT                   PPPSSWIIVSGLSLPEWLIEIEAEAMLD"
FT   misc_feature    235670..236026
FT                   /note="HMMPfam hit to PF01042, DE Endoribonuclease L-PSP,
FT                   score 5.7e-11"
FT   CDS             complement(236034..236351)
FT                   /transl_table=11
FT                   /locus_tag="BB3157"
FT                   /product="putative membrane protein"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHP9"
FT                   /protein_id="CAE33649.1"
FT                   /translation="MKTFRYAVGLAGLLVAGHAMAQYGVWTKKSANGSWVAPRTGFTSL
FT                   VLSQAEINAFRECVLPGRSGGDNSATRIVETATGKEVKLLDCEAMRAERKAEQDRLNAK
FT                   K"
FT   misc_feature    complement(236289..236351)
FT                   /note="Signal peptide predicted for BB3157 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.986 between residues 21 and 22"
FT   CDS             complement(236585..236992)
FT                   /transl_table=11
FT                   /locus_tag="BB3158"
FT                   /product="putative phage-related protein"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHP8"
FT                   /protein_id="CAE33650.1"
FT                   /translation="MGFQLSARDRQRLAGVYPDLAAVVEAAAGAYNGRFTVLEGARSAQ
FT                   RQSRLLAQGVSQTLRSLHIPQPDGWAHAVDLAPLVEGTIPWEDWASFKRLAEVMKESAA
FT                   RLEIPLEWGGDWTTLKDGPHFQLPRGWRGKA"
FT   CDS             complement(237333..237710)
FT                   /transl_table=11
FT                   /locus_tag="BB3159"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2182"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHP7"
FT                   /protein_id="CAE33651.1"
FT                   /translation="MNMEIRPVRTEADYKSALKEISRLMESDPELGTPDGDRLDVLATL
FT                   VQAYEARHYPIDLPDPVEAIKFRMEQGGLTPKDLEPMIGKRNRVYEVLNRKRGLTLPMI
FT                   WRLHTELGIPAESLIRPPAHA"
FT   CDS             complement(237707..238009)
FT                   /transl_table=11
FT                   /locus_tag="BB3160"
FT                   /product="putative membrane protein"
FT                   /db_xref="InterPro:IPR018669"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHP6"
FT                   /protein_id="CAE33652.1"
FT                   /translation="MRVIALSTLRQFWEKHPAAEQPLKAWVDEASKARWAPPADIKAQY
FT                   RSASVLKNRRVVFNIKGNDYRLIVAVAFKLGIVYVKFVGTHVEYDRVDAETVEME"
FT   tRNA            complement(238151..238229)
FT                   /note="tRNA Met anticodon CAT, Cove score 66.21"
FT   CDS             complement(238239..240407)
FT                   /transl_table=11
FT                   /gene="rpoD"
FT                   /locus_tag="BB3161"
FT                   /product="RNA polymerase sigma factor 70"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2184"
FT                   /db_xref="GOA:Q7WHP5"
FT                   /db_xref="HSSP:1IW7"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHP5"
FT                   /protein_id="CAE33653.1"
FT                   /translation="MKVAKPAAKTAAKKTATKTVAAKTAAADKPAKTTKARAKKAEDKL
FT                   ADLVGAARPAPSGRRPGRPAKNANNDSDAFDDSMDGEGEVLPDLKPPKRGGKRGKADPK
FT                   DLIARGPVSPEEYEARRNRLKQLIKLGKDRGYLTYGEINDHLPDDLVDAEAIDGIISTF
FT                   SDMGIAVYDQAPDAETLLMSENAPVASNDDDVEDEAEAALTTVDSDFGRTTDPVRMYMR
FT                   EMGSVELLTREGEIEIAKRIEDGLKHMVMAISACPTTINEILAHITRVREGQAQIDEVV
FT                   DGLVDPEDGEEYAGAGVTADEDEADDGPAGGMSSKQLEDLRVKALAKFDEVSKQFEKMR
FT                   QSYEKEGYKSDAYLKAQDIIQTELMGIRFTAKMVEKLADTLRAQVEEVRQLERAVLHTC
FT                   VDRAGMPRSHFLKAFPGNETNLQWVLDEVAAAHAYSETLERQIPAVQELQQKLIDLQTR
FT                   VVLPLKDLKDVNKRMATGEAKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGN
FT                   IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISR
FT                   QILQETGAEPDPATLAQKMDMPEDKIRKILKIAKEPISMETPIGDDDDSHLGDFIEDTA
FT                   TLAPSDAALHGSMRDVVKEVLDSLTPREAKVLRMRFGIEMSTDQTLEEVGKQFDVTRER
FT                   IRQIEAKALRKLRHPSRADKLKSFLEGQ"
FT   misc_feature    complement(238284..238967)
FT                   /note="HMMPfam hit to PF00140, DE Sigma-70 factor, region
FT                   1.2, score 1.6e-125"
FT   misc_feature    complement(238290..238370)
FT                   /note="PS00716 Sigma-70 factors family signature 2."
FT   misc_feature    complement(238836..238877)
FT                   /note="PS00715 Sigma-70 factors family signature 1."
FT   CDS             complement(241200..243230)
FT                   /transl_table=11
FT                   /gene="dnaG"
FT                   /gene_synonym="dnaP"
FT                   /gene_synonym="parB"
FT                   /locus_tag="BB3162"
FT                   /product="DNA primase"
FT                   /EC_number="2.7.7.-"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2185"
FT                   /db_xref="GOA:Q7WHP4"
FT                   /db_xref="HSSP:1DD9"
FT                   /db_xref="InterPro:IPR006154"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHP4"
FT                   /protein_id="CAE33654.1"
FT                   /translation="MIPESFIQDLLARVDVVDVVGRYVQLRKGGANLLGLCPFHNEKSP
FT                   SFTVSPTKQFYHCFGCGAHGSAITFLMEHTGASFPEAVRTLAAAVGLTVPEENRSPRQQ
FT                   AESARRKAEVSRHTQVLDAAQAHYLRQLRGSPQAIAYLKQRGLTGEIAAHFGLGWSGTD
FT                   RHGLSHVFDNYEDPVLVEAGLVIESEDGRRYDRFRERVMFPIRNARGSLIGFGGRIIGK
FT                   GEPKYLNSPETPLFSKGHELYGLWEARLAIRQEGQVVVVEGYMDVVGLAQQGIANAVAT
FT                   LGTSTTPDHVKKLLRASDKVIFSFDGDAAGRRAAWRALQACLPVLRDDIAIRFLFLPAE
FT                   HDPDSYVRELGAEAFRTRLGEAVALSRFLLDELASRHTMGEAEGRASCLHEAKPLLAAI
FT                   PECALRVQIERELARLVQLTPEEMAQVLAQQPARPLVSAAAPAQASAPAAGREGGPGHA
FT                   DEAPPDWAFEPVHDFEPDAYSVGAVDGEPGMPAAGGWQERKGRQGGDWKGKKGDWKGKK
FT                   GDWKGRRDNDTGGYEGRRTMPSLARRLLCLLLAHPELVDTMGDQQLEVIDHGPHLGLVR
FT                   DLILLAQTSGARHVGALMEAADPDSDLYVVLKGLRADVLAQEDLPHPQTEWDDALRRME
FT                   FDAARAEMAKLAESGLATDEARRRYLELSSRIMVLKNAGAH"
FT   misc_feature    complement(242217..242465)
FT                   /note="HMMPfam hit to PF01751, DE Toprim domain, score
FT                   9.5e-24"
FT   misc_feature    complement(242934..243227)
FT                   /note="HMMPfam hit to PF01807, DE CHC2 zinc finger, score
FT                   1.1e-58"
FT   CDS             complement(243250..243489)
FT                   /transl_table=11
FT                   /gene="rpsU"
FT                   /locus_tag="BB3163"
FT                   /product="30S ribosomal protein S21"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2186"
FT                   /db_xref="GOA:Q7WHP3"
FT                   /db_xref="InterPro:IPR018278"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WHP3"
FT                   /protein_id="CAE33655.1"
FT                   /translation="MLSIKANHFMPIVRLKENEPFEAALRRFKRTIEKTGLLTELRSRE
FT                   FYEKPTAERKRKHAAAVKRHYKRIRSQQLPPRLY"
FT   misc_feature    complement(243298..243459)
FT                   /note="HMMPfam hit to PF01165, DE Ribosomal protein S21,
FT                   score 1.3e-28"
FT   misc_feature    complement(243388..243426)
FT                   /note="PS01181 Ribosomal protein S21 signature."
FT   CDS             complement(243740..244279)
FT                   /transl_table=11
FT                   /locus_tag="BB3164"
FT                   /product="putative transferase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2187"
FT                   /db_xref="GOA:Q7WHP2"
FT                   /db_xref="InterPro:IPR002375"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHP2"
FT                   /protein_id="CAE33656.1"
FT                   /translation="MSSPSSDDSHLWVTWDDYHRLIERLALQVYQSGWQFDQILCLARG
FT                   GVRVGDVMSRIFDVPLGILATSSYREAAGTKQGDLDIAQFITITRGTLSGRVLLVDDMV
FT                   DTGHTFNKVHTHLSEQFPAISELRSAVLWWKGHSQATPDYFVDKLPTNPWIHQPFEDYD
FT                   SLRPHQLEAWIRKGYK"
FT   misc_feature    complement(243812..244270)
FT                   /note="HMMPfam hit to PF00156, DE Phosphoribosyl
FT                   transferase domain, score 0.00026"
FT   misc_feature    complement(243953..243991)
FT                   /note="PS00103 Purine/pyrimidine phosphoribosyl
FT                   transferases signature."
FT   CDS             complement(244393..245700)
FT                   /transl_table=11
FT                   /gene="purA"
FT                   /gene_synonym="adeK"
FT                   /locus_tag="BB3165"
FT                   /product="adenylosuccinate synthetase"
FT                   /EC_number="6.3.4.4"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2188"
FT                   /db_xref="GOA:Q7WHP1"
FT                   /db_xref="InterPro:IPR001114"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WHP1"
FT                   /protein_id="CAE33657.1"
FT                   /translation="MIRKMSKNVVVIGTQWGDEGKGKIVDWLAESVQGVVRFQGGHNAG
FT                   HTLWINGKKTILRLIPSGIMHDGVTCFIGNGVVLSPEALLREIEELEAAGLDVRSRLQV
FT                   SEICTLILPYHVAVDKAREARKGEGKIGTTGRGIGPAYEDKVARRALRVQDLFNPALFD
FT                   EKLAEVLDYHNFVLTQYLGAEPVSANEVRDQAMALAPALAPMVRDVSSNLFALQQEGKN
FT                   LLFEGAQGALLDVDHGTYPFVTSSNCVAGAASAGAGVGPQALQYVLGITKAYTTRVGSG
FT                   PFPTELVDEIGTRLATIGKEFGSVTGRPRRCGWFDGAALKRSVRLNGISGLCITKLDVL
FT                   DGLETIQLGVGYRVNGEFRDVLPYGAHAVAQAQAVLEELPGWTESTVGITEYSKLPVNA
FT                   RRYLERVAEVCGVPIDLVSTGPDRNETIVLRHPFKG"
FT   misc_feature    complement(244417..245682)
FT                   /note="HMMPfam hit to PF00709, DE Adenylosuccinate
FT                   synthetase, score 1.5e-256"
FT   misc_feature    complement(245257..245292)
FT                   /note="PS00513 Adenylosuccinate synthetase active site."
FT   misc_feature    complement(245635..245658)
FT                   /note="PS01266 Adenylosuccinate synthetase GTP-binding
FT                   site."
FT   CDS             complement(245765..246922)
FT                   /transl_table=11
FT                   /locus_tag="BB3166"
FT                   /product="putative tRNA synthetase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2189"
FT                   /db_xref="GOA:Q7WHP0"
FT                   /db_xref="InterPro:IPR004516"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WHP0"
FT                   /protein_id="CAE33658.1"
FT                   /translation="MGNWLLPEGLADVLPAEARRIEELRRELLDLYRTYGFELVAPPLV
FT                   EYIDSLLSSTGSDLNLRTCKLVDQLSGRTLGVRADMTSQVTRIDAHLLNRAGVTRLCYC
FT                   GSVLHARPADLLSSRELLQIGAEIYGHAGFEADLEIIQLVMDTLATAGVRNARLDLCHS
FT                   GVMRAIFDADPQASRHAGDLCTLLREKDVPGLAELASRVDGLGEDTVRALQALATLYGG
FT                   PEIIARARRELPAVPGMAQALDALQALVDAMPGVTLSVDLADVGGYGYHSGVTFAVYGE
FT                   DWHDALVRGGRYDDVSRAFGRARPATGFSLDLRKLAAGLTPAEPARAVRAPWGQDPALT
FT                   DAVRRLRRSGEIVVQVLPGHEQGLDEFVCDRELALQDGAWTVRTL"
FT   CDS             complement(247106..248005)
FT                   /transl_table=11
FT                   /gene="hflC"
FT                   /locus_tag="BB3167"
FT                   /product="putative inner membrane-anchored protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2190"
FT                   /db_xref="GOA:Q7WHN9"
FT                   /db_xref="InterPro:IPR010200"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHN9"
FT                   /protein_id="CAE33659.1"
FT                   /translation="MQRLMPILVGLLVVLAVLSSCVFVVRERDYALVFSLGEVRQVISE
FT                   PGLYFKAPPPFQNVVTLDKRILTIESSDAERIQTSEKKNLLIDSYVKWRIADPRLYYVT
FT                   FGGNERAAQERLQAQIRDALNAAVNVRTVKDVVSAERDKVMAEILTNVAKRAEPLGVQV
FT                   VDVRLRRIEFAPEISESVYRRMEAERTRVANELRSIGAAESEKIRAEADRQREVIVAQA
FT                   YARAQGIMGEGDAQAGSIYAQAFGRNTEFYTYYKSLEAYRAAFGKTGDVLVVDPTSEFF
FT                   QFFKNPGKGAAGAPAPAN"
FT   misc_feature    complement(247400..247945)
FT                   /note="HMMPfam hit to PF01145, DE SPFH domain / Band 7
FT                   family, score 2.4e-33"
FT   misc_feature    complement(247928..247987)
FT                   /note="1 probable transmembrane helix predicted for BB3167
FT                   by TMHMM2.0 at aa 7-26"
FT   misc_feature    complement(247934..248005)
FT                   /note="Signal peptide predicted for BB3167 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.934) with cleavage site
FT                   probability 0.520 between residues 24 and 25"
FT   misc_feature    complement(247943..247975)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(248024..249166)
FT                   /transl_table=11
FT                   /gene="hflK"
FT                   /locus_tag="BB3168"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2191"
FT                   /db_xref="GOA:Q7WHN8"
FT                   /db_xref="InterPro:IPR001107"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHN8"
FT                   /protein_id="CAE33660.1"
FT                   /translation="MFGRKGGGGNNRPNNRGGMTPPSPRGARIGLGIIALVLVLLWLAS
FT                   GFFIVQEGQVAVVTQFGKYKSTAPAGFQWRMPYPIQNHEMVNVSQLRTFEVGFRGGSRN
FT                   KVLPEALMLTTDENIVDMQFVVQYRLRADGAPDYLFKMRDPDESVRQAAETAMREIVGK
FT                   KPMDFVLYEGRTEVAAEVQNLMQQILDRYSAGIQISTVAIQNVQPPEQVQAAFDDAVKA
FT                   GQDRERQINEGQAYANQVVPLASGQASRMIEQAEGYKAKVIGDAQGNASRFSSILNEYE
FT                   KAPQVMRERLYLETMQEVFTRASKVMVDTKGGNNMLYLPLDKIMQQAAQDAGKPTSSSL
FT                   GLPGANQPAIPQAPARGSASGQSSSGSSTSNTLPRDRMSR"
FT   misc_feature    complement(248456..249031)
FT                   /note="HMMPfam hit to PF01145, DE SPFH domain / Band 7
FT                   family, score 7.8e-33"
FT   misc_feature    complement(249014..249082)
FT                   /note="1 probable transmembrane helix predicted for BB3168
FT                   by TMHMM2.0 at aa 29-51"
FT   CDS             complement(249294..250331)
FT                   /transl_table=11
FT                   /gene="hflX"
FT                   /locus_tag="BB3169"
FT                   /product="putative GTP-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2192"
FT                   /db_xref="GOA:Q7WHN7"
FT                   /db_xref="InterPro:IPR002917"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHN7"
FT                   /protein_id="CAE33661.1"
FT                   /translation="MLAKGAGAEIVGTLTARRDRPDAKFFIGSGKVEEGVAMAGALLAD
FT                   IILFDQPLSPAQQRNLEREFNLRVVDRVALILDIFALRAKSHEGKLQVELAQLQHLATR
FT                   LTRMWSHLERQRGGIGMRGPGEAQLEMDRRMIGAKVKVLRERLDRVERQRVTQRRARAR
FT                   GGALSVSLVGYTNAGKSTLFNAMTRAGAYAADQLFATLDTTTRRIWIDGAGSVVLSDTV
FT                   GFIRDLPHNLIAAFRATLEETVHADLLLHVVDAASAQRDEQIAEVDKVLAEIGAAQIPT
FT                   ILVYNKIDRAGLEPRVDRDAHGTIARVFVSATERAGLDALRGAIAEIGQIVGNNVSNHQ
FT                   TLQSE"
FT   misc_feature    complement(249792..249815)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             complement(250488..250724)
FT                   /transl_table=11
FT                   /gene="hfq"
FT                   /locus_tag="BB3170"
FT                   /product="putative RNA-binding regulatory protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2193"
FT                   /db_xref="GOA:Q7WHN6"
FT                   /db_xref="HSSP:1HK9"
FT                   /db_xref="InterPro:IPR001163"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WHN6"
FT                   /protein_id="CAE33662.1"
FT                   /translation="MSNKGQTLQDPFLNTLRKEHVPVSIYLVNGIKLQGQIESFDQYVV
FT                   LLRNTVTQMVYKHAISTVVPARAVNFQVEVPAE"
FT   misc_feature    complement(250530..250709)
FT                   /note="HMMPfam hit to PF03329, DE Host factor Hfq, score
FT                   6.2e-40"
FT   CDS             complement(250863..251933)
FT                   /transl_table=11
FT                   /gene="hisC"
FT                   /gene_synonym="his1"
FT                   /locus_tag="BB3171"
FT                   /product="histidinol-phosphate aminotransferase"
FT                   /EC_number="2.6.1.9"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2194"
FT                   /db_xref="GOA:Q7WHN5"
FT                   /db_xref="InterPro:IPR015421"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WHN5"
FT                   /protein_id="CAE33663.1"
FT                   /translation="MSRHWSPVVGTLSPYVPGEQPKLPDLIKLNTNENPYGPSPKALQA
FT                   IAAAAGDTLRLYPDPASDDLRGAIAAAVGVQADQVFVGNGSDEVLAHVFMALFRHGRPV
FT                   RFPDISYSFYPVYCGLYEIPYQVVPLTDDFRIDPADYQPGGQAAGGIIFPNPNAPTGRA
FT                   LARDEVERIVTANPDTVVVVDEAYVDFGAESVAPLVDRHDNLLVVQTLSKSRSLAGLRV
FT                   GFALGSRALIDGLERVKNSFNSYPIDRLASAGAQAAMQDQAYFDRTRQAVMATRERMSA
FT                   DLRALGFDVLPSAANFVFARHPEHDAAQLAARLRERSILVRHFRQARIDQFLRITVGTD
FT                   AQCEALIGALKKIFSS"
FT   misc_feature    complement(250872..251723)
FT                   /note="HMMPfam hit to PF00155, DE Aminotransferase class I
FT                   and II, score 1.1e-45"
FT   misc_feature    complement(251277..251306)
FT                   /note="PS00599 Aminotransferases class-II
FT                   pyridoxal-phosphate attachment site."
FT   CDS             complement(251937..253292)
FT                   /transl_table=11
FT                   /locus_tag="BB3172"
FT                   /product="putative GTP-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2195"
FT                   /db_xref="GOA:Q7WHN4"
FT                   /db_xref="InterPro:IPR005225"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WHN4"
FT                   /protein_id="CAE33664.1"
FT                   /translation="MSFKPVVALVGRPNVGKSTLFNRLTRSRAALVADFSGLTRDRHYG
FT                   EGRVGDTPFLVIDTGGFEPVAKDGILAEMARQTRQAIAEADVVVFLVDARAGVNAHDHE
FT                   IARLLRKSGQQRVLLAVNKAEGMGVGNATGDFHELGLGEPHPISAAHGDGIVDLIEIAL
FT                   SGLVAPPADTGEQLEQDVVDHRIKLAIVGRPNVGKSTLINTLLGEERVIAFDMPGTTRD
FT                   AIEIDFERDGRKYTLIDTAGLRKRGKVFEAIEKFSVIKTLQAIEASNVVLLMIDAQAEV
FT                   SEQDAHIAGFVLETGRAVVVAINKWDGLDSDQRERIEREFQRKLRFLGFARMHTISALK
FT                   GQGVKPLLKSVNAAHAAAFAKLSTPRLTRELQAAVEQQPPPRKGIFRPKMRYAHQGGQN
FT                   PPLIVIHGNALDAVPDSYRRYLETRFRNAFDLAGTPLRIEFKSSRNPYVQEN"
FT   misc_feature    complement(252276..253073)
FT                   /note="HMMPfam hit to PF01926, DE GTPase of unknown
FT                   function, score 1.2e-57"
FT   misc_feature    complement(252696..252719)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    complement(253239..253262)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             complement(253319..254479)
FT                   /transl_table=11
FT                   /locus_tag="BB3173"
FT                   /product="putative quinoprotein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2196"
FT                   /db_xref="InterPro:IPR011047"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHN3"
FT                   /protein_id="CAE33665.1"
FT                   /translation="MMRNSRPGRAWRGAVVLTGLLALSGCSMFSSDDDRYKPAELTQYA
FT                   PGMSVRTAWTASVGSGSGLGFAPTVLGESIYAATPDGSVGKFDLLSGRAIWKSSADAKL
FT                   SAGAGSDGQTTAVATPDGEVIAFDDTGKIKWRARATSDVAIPPVVGYGVVVVRSGDYRI
FT                   QAFNAENGERMWSMQRPGPALALRSAAQMVLAEGLVISGLPGGKLLAINSATGNVQWEG
FT                   TVATPRGASDLERLTDVVGAPRIAGRLMCAVAYQGRIVCFDVSAGGRPIWAKDFSSASG
FT                   MVIDDRFAYAPDQGSVVSAFALDSGNNVWKQAELKNRLLTAPALLGEAVAVGDFEGYVH
FT                   FLSRSDGRLLARLSVGGGAIVSPPQTTSQGVLVQTGNGSLVMVRAN"
FT   misc_feature    complement(253385..253501)
FT                   /note="HMMPfam hit to PF01011, DE PQQ enzyme repeat, score
FT                   33"
FT   misc_feature    complement(253622..253741)
FT                   /note="HMMPfam hit to PF01011, DE PQQ enzyme repeat, score
FT                   86"
FT   misc_feature    complement(253778..253891)
FT                   /note="HMMPfam hit to PF01011, DE PQQ enzyme repeat, score
FT                   0.42"
FT   misc_feature    complement(253913..254026)
FT                   /note="HMMPfam hit to PF01011, DE PQQ enzyme repeat, score
FT                   0.015"
FT   misc_feature    complement(254033..254146)
FT                   /note="HMMPfam hit to PF01011, DE PQQ enzyme repeat, score
FT                   0.0018"
FT   misc_feature    complement(254150..254263)
FT                   /note="HMMPfam hit to PF01011, DE PQQ enzyme repeat, score
FT                   15"
FT   misc_feature    complement(254387..254479)
FT                   /note="Signal peptide predicted for BB3173 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.976) with cleavage site
FT                   probability 0.966 between residues 31 and 32"
FT   misc_feature    complement(254402..254434)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(254482..255120)
FT                   /transl_table=11
FT                   /locus_tag="BB3174"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2197"
FT                   /db_xref="InterPro:IPR018704"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHN2"
FT                   /protein_id="CAE33666.1"
FT                   /translation="MAYDLEEQEKLDAIRAWWARYGTLILTLATLVVLAWGGWSGWKAY
FT                   QNYRANQAMGYFEALEDAARLGGADAATRIKAAAATLRTDYPATGYAGRGALIAAQALQ
FT                   SQQDVDGAREQLEWLAAQAKQPALQPVARLRLAGILLDQKQYDAALAQLNNPPASFAAL
FT                   FADRRGDVLAAQGKRDEARAAWQSAIDGLGTSNPLTQVVQLKLDALSGA"
FT   misc_feature    complement(255001..255021)
FT                   /note="PS00340 Growth factor and cytokines receptors family
FT                   signature 2."
FT   misc_feature    complement(255004..255072)
FT                   /note="1 probable transmembrane helix predicted for BB3174
FT                   by TMHMM2.0 at aa 17-39"
FT   CDS             complement(255122..256408)
FT                   /transl_table=11
FT                   /gene="hisS"
FT                   /locus_tag="BB3175"
FT                   /product="histidyl-tRNA synthetase"
FT                   /EC_number="6.1.1.21"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2198"
FT                   /db_xref="GOA:Q7WHN1"
FT                   /db_xref="InterPro:IPR004516"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WHN1"
FT                   /protein_id="CAE33667.1"
FT                   /translation="MTQVFQKVSAIRGMNDVLPGPSARWEKFEEIVRGWLRSYGYRNVR
FT                   TPVLEHTRLFARGIGEVTDIVEKEMYTFTDALNGDSLTMRPEMTAGIVRASIEHNMLYD
FT                   RPHRVYAIGPVFRHERPQRGRYRQFHQIDVEALGFAGPDVDAEMIVMLARLWKLLGLQD
FT                   VRLELNSLGQPAERAAHRAALIEHLERHQDILDEDGRRRMYSNPLRVLDTKNPAMQEMA
FT                   DSAPRLFDFLGEESRSHFDGLCQRLADAGIEYRLNPRLVRGLDYYNLTVFEWVTDRLGA
FT                   QGTVCGGGRYDGLVELLGGKPAPAVGFAIGMERLLDLWEQSVEIEQPAECEVYIVHQGE
FT                   EGQRLAARVGEQLRDAGLDVIVHAGAAGFKAQFKRADASGARIAVILGGDEVASRTASI
FT                   KHLRGPVGADAAQQQVPLAQLADVLKSKG"
FT   misc_feature    complement(255128..255433)
FT                   /note="HMMPfam hit to PF03129, DE Anticodon binding domain,
FT                   score 1.5e-10"
FT   misc_feature    complement(255920..256372)
FT                   /note="HMMPfam hit to PF00587, DE tRNA synthetase class II
FT                   core domain (G, H, P, S and T), score 3.3e-35"
FT   misc_feature    complement(256010..256063)
FT                   /note="PS00179 Aminoacyl-transfer RNA synthetases class-II
FT                   signature 1."
FT   CDS             complement(256461..257762)
FT                   /transl_table=11
FT                   /gene="ispG"
FT                   /gene_synonym="gcpE"
FT                   /locus_tag="BB3176"
FT                   /product="1-hydroxy-2-methyl-2-(E)-butenyl4-diphosphate
FT                   synthase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2199"
FT                   /db_xref="GOA:Q7WHN0"
FT                   /db_xref="InterPro:IPR004588"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WHN0"
FT                   /protein_id="CAE33668.1"
FT                   /translation="MRYMQDSSMPCQDASPPDVGAAPRRATRAVRVQWGGRTVTVGGNA
FT                   SVVVQSMTNTDTADAVATAIQVKELAQAGSEIVRITVNTPEAAREVAAIREQLDRMGVE
FT                   VPLVGDFHYNGHKLLTQFPECAQALSKYRINPGNMGGGKRRDDNFAQMIEVACRHDKPV
FT                   RIGVNWGSLDHELMARKMDENSRRAQPWEAQAVMRDALVVSAISNARRAEELGLRSDAI
FT                   VLSCKVSHVQDLIAVYRDLSARCDYPLHLGLTEAGMGSKGIVASTAALAVLLQEGIGDT
FT                   IRISLTPEPGGDRTREVIVAQEILQTMGLRAFTPMVVACPGCGRTSSTFFQELADSIQS
FT                   FLRRQMPLWRTRYPGVESMNVAVMGCVVNGPGESRHADIGISLPGTGEVPAAPVFIDGE
FT                   RTVTLKGDHIAEEFQAIVEDYVARRYGAGITHQE"
FT   misc_feature    complement(256599..256616)
FT                   /note="PS00343 Gram-positive cocci surface proteins
FT                   'anchoring' hexapeptide."
FT   CDS             complement(257769..258275)
FT                   /transl_table=11
FT                   /locus_tag="BB3177"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2200"
FT                   /db_xref="GOA:Q7WHM9"
FT                   /db_xref="InterPro:IPR001387"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHM9"
FT                   /protein_id="CAE33669.1"
FT                   /translation="MTQDPASAASPAAIAPGAAAPTVGSALRALRQAKGWSLEEVSSRI
FT                   KFSTRMIQALEEERWESLPKGVSLRGLVRNYARMLGADAQAVVDSLDLEAARTPAPARP
FT                   APRGGQGLRPAGVNISVDDERSSGSWGWLLAILVVVAAAVAYAFWQGWLPQEWLPAQWF
FT                   SPVTQ"
FT   misc_feature    complement(257820..257888)
FT                   /note="1 probable transmembrane helix predicted for BB3177
FT                   by TMHMM2.0 at aa 130-152"
FT   misc_feature    complement(258219..258275)
FT                   /note="Signal peptide predicted for BB3177 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.945) with cleavage site
FT                   probability 0.476 between residues 19 and 20"
FT   CDS             complement(258272..259420)
FT                   /transl_table=11
FT                   /locus_tag="BB3178"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2201"
FT                   /db_xref="GOA:Q7WHM8"
FT                   /db_xref="InterPro:IPR007197"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WHM8"
FT                   /protein_id="CAE33670.1"
FT                   /translation="MESVERVNLLGLDGAALSELVGQWGGKPFRARQLQRWVHQRGADS
FT                   FDAMTDLARDFRAQLARDCVIEALPVNTEQRSSDGTRKWLFDVGQGNAIETVFIPEDDR
FT                   GTLCISSQAGCVVNCRFCSTGHQGFNRNLRASEIIGQLWWAKRVLEAAADTARLPGGKA
FT                   GEDTRVISNVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRL
FT                   SQDCPVALAVSLHAPNDALRDELVPLNRKYPLNALLAACERYLAHAPRDFITFEYCMLD
FT                   GINDTDQHARELIQLARQVRCKLNLIPFNPFPASGLKRSPSARVRVFAQRLMDAGIVTT
FT                   VRKTRGDDIDAACGQLAGEVRDRTRITERNATRTIPIQQVHA"
FT   CDS             complement(259448..259873)
FT                   /transl_table=11
FT                   /gene="ndk"
FT                   /locus_tag="BB3179"
FT                   /product="nucleoside diphosphate kinase"
FT                   /EC_number="2.7.4.6"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2202"
FT                   /db_xref="GOA:Q7WHM7"
FT                   /db_xref="HSSP:1K44"
FT                   /db_xref="InterPro:IPR001564"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WHM7"
FT                   /protein_id="CAE33671.1"
FT                   /translation="MSIERTLSIIKPDAVAKNVVGQIVARFEQAGLKVIAARMQQLSRT
FT                   DAERFYAVHKERPFFKDLVDFMVSGPVFVQVLEGESAIQKNRDLMGATDPKKAAPGTIR
FT                   ADFADSIDANAVHGSDAPETAAVEVAFFFPEINIHSR"
FT   misc_feature    complement(259454..259864)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF00334, DE Nucleoside diphosphate
FT                   kinase, score 5.6e-69"
FT   misc_feature    complement(259508..259534)
FT                   /note="PS00469 Nucleoside diphosphate kinases active site."
FT   CDS             260195..263077
FT                   /transl_table=11
FT                   /gene="valS"
FT                   /locus_tag="BB3180"
FT                   /product="valyl-tRNA synthetase"
FT                   /EC_number="6.1.1.9"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2203"
FT                   /db_xref="GOA:Q7WHM6"
FT                   /db_xref="HSSP:1IVS"
FT                   /db_xref="InterPro:IPR019499"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WHM6"
FT                   /protein_id="CAE33672.1"
FT                   /translation="MTDAAPNQPVNESQELSKSFEPAEIETRWYDEWAKRGYFDAGRHV
FT                   ETGTDPQPYVIQFPPPNVTGTLHMGHAFNQTIMDGLVRYHRMLGDDTVFVPGTDHAGIA
FT                   TQIVVERQLDAQKVSRHDLGREKFVEKVWEWKEQSGSTITGQVRRLGASADWPREYFTM
FT                   DARMSRGVAETFVRLYQQGLIYRGKRLVNWDPKLLTAVSDLEVQSEEVDGHMWHILYPF
FT                   VDGPQTIIDAEGNTVTLRGMTIATTRPETMLADGALCVHPDDPRYKHLLGKLVELPLCD
FT                   RNIPIIADDFVDPDFGTGCVKITGAHDFNDYACALRHDIPLIVIFTLDAHINENGPKQF
FT                   QGLERYEARQAVVAELQAQQYLVKVEPHKMMQPKGDRTGVVLEPMLTDQWFVAMSKPAP
FT                   AGTLNPGKSITEVALEAVADGRIAFYPENWTTIYNQWLNNIQDWCISRQLWWGHQIPAW
FT                   YSEDGQVFVARSEQEAQEQARAAGVAGPLTRDPDVLDTWFSSALVPFTTFGWPEDTPDL
FT                   RRYLPSSVLVTGFDIIFFWVARMVMLTMHMTGSVPFKHVYVHGLIRDADGQKMSKSKGN
FT                   TLDPVDLIDGIDLEGLVRKRTFGLMNPKQAGAIEKATRRQYPDGIPAFGTDALRFTMAA
FT                   YATLGRNINFDLKRCEGYRNFCNKLWNATRFVLMNTEGHALDGDGGELSFADRWIVSQL
FT                   QALEAEVERGFADYRFDNVANALYRYVWDEYCDWYLELAKVQIQQGTPAQQLGTRRTLI
FT                   RVLEAVLRLAHPVIPFITEELWQKVALVAGKRTAGAVASVSVQPYPRANPQAVDAEAEA
FT                   AVAELKSQVEAVRALRGEMNLSPAQRVPLVAEGPTDVLSRNAPYLAALAKLSEVEVVAA
FT                   LPDAGAPVQVVGDARLMLHVEIDVAAECARLDKEIARLEGEIAKANGKLGNASFVERAP
FT                   AAVVEQEKARLAQFSETLEKVRGQRVKLGA"
FT   misc_feature    260276..262132
FT                   /note="HMMPfam hit to PF00133, DE tRNA synthetases class I
FT                   (I, L, M and V), score 1.5e-245"
FT   misc_feature    260375..260410
FT                   /note="PS00178 Aminoacyl-transfer RNA synthetases class-I
FT                   signature."
FT   misc_feature    261395..261418
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             complement(263170..263925)
FT                   /transl_table=11
FT                   /locus_tag="BB3181"
FT                   /product="putative outer membrane (scaffolding) protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2204"
FT                   /db_xref="InterPro:IPR010583"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHM5"
FT                   /protein_id="CAE33673.1"
FT                   /translation="MKHAWWRATVVCLAGTLGTAAQAQNYIGISAAVAPRYEGAKDYRF
FT                   LPVPLIHYENGPFFISPRAGLPSAGLKWQLGEHVYAGVFVGAHLGRDADDSDILHGLDD
FT                   IDMHATYGAYIEWQYGALGLGAAYRQAARSGYGGVGELRATYRVWQTGRDSVSVGARTE
FT                   WASDDYMRTWYGISASQAARSEAGLRRYSASSGFKSGGIFASWTHRLDQRWAVNATAGV
FT                   NTLFGDARDSPVSERSTNYFGGVGLTYAF"
FT   misc_feature    complement(263857..263925)
FT                   /note="Signal peptide predicted for BB3181 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.981 between residues 23 and 24"
FT   CDS             264055..264726
FT                   /transl_table=11
FT                   /locus_tag="BB3182"
FT                   /product="putative two-component response regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2205"
FT                   /db_xref="GOA:Q7WHM4"
FT                   /db_xref="HSSP:1KGS"
FT                   /db_xref="InterPro:IPR001867"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHM4"
FT                   /protein_id="CAE33674.1"
FT                   /translation="MTHLLLVEDDPMLGDALQTALQRELGARVDWVRDGAQAQLALVDH
FT                   AYQLILLDIGLPGQSGLALLRALREGYDTTPVLLVTARDQLSDRIRGLDGGADDYIVKP
FT                   FELDELLARLRAVLRRSHNQVAPLMRHGELLVDPAARQVSRAGRPVALSQSEYRTLLAL
FT                   MQRRGRTVSREQLEHDVYGASVALESNTVAVYVHQLRRKLGDDLIETVHGYGYRIGQEG
FT                   A"
FT   misc_feature    264058..264420
FT                   /note="HMMPfam hit to PF00072, DE Response regulator
FT                   receiver domain, score 1.4e-35"
FT   misc_feature    264496..264699
FT                   /note="HMMPfam hit to PF00486, DE Transcriptional
FT                   regulatory protein, C terminal, score 7.6e-20"
FT   CDS             264723..266072
FT                   /transl_table=11
FT                   /locus_tag="BB3183"
FT                   /product="putative two component sensor kinase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2206"
FT                   /db_xref="GOA:Q7WHM3"
FT                   /db_xref="InterPro:IPR003594"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHM3"
FT                   /protein_id="CAE33675.1"
FT                   /translation="MKSLKRRILTAVLAALLLNWGVWLGWQTFEMGQRETGTWDARLRD
FT                   VASQAVLSMPLDIMERSEPTGFRLPEPVQTSELRMSFQIWSMASRRQIVHSVNAPPGPL
FT                   NPAFADGYADVELDGEPWRVYSVTDAEGRIQAQAGHSLAARRGDILQWLGASLKASALL
FT                   FLFLALSILLAIDRAMRRLDRVGRAVQQRDPLDLAPLPDGDVPAELRPLITAINRQFGR
FT                   VHTALARERRLIADAAHELRTPLAALKMQAEVALGARHADERHSALCKLLDAARRAARL
FT                   SEQLLDQARLDAMEASVPGGEVDLATLTAMIIADHQARAQARHQRIQLDVRPAFVSGDL
FT                   DSLGILVSNLVDNALRYTPEGGRVVVYCGPLENGAVGLRVLDNGPGVPADRHERIFERF
FT                   YRQPGQAQRGGGIGLSLVAQIARLHRARIDCGAGLDGRGFGIAVGFAPRS"
FT   misc_feature    264723..264794
FT                   /note="Signal peptide predicted for BB3183 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.985) with cleavage site
FT                   probability 0.558 between residues 24 and 25"
FT   misc_feature    join(264741..264809,265176..265244)
FT                   /note="2 probable transmembrane helices predicted for
FT                   BB3183 by TMHMM2.0 at aa 7-29 and 152-174"
FT   misc_feature    265167..265397
FT                   /note="HMMPfam hit to PF00672, DE HAMP domain, score 0.022"
FT   misc_feature    265407..265604
FT                   /note="HMMPfam hit to PF00512, DE His Kinase A
FT                   (phosphoacceptor) domain, score 8.5e-11"
FT   misc_feature    265734..266066
FT                   /note="HMMPfam hit to PF02518, DE Histidine kinase-, DNA
FT                   gyrase B-, and HSP90-like ATPase, score 5.3e-22"
FT   CDS             266114..266620
FT                   /transl_table=11
FT                   /locus_tag="BB3184"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1843"
FT                   /db_xref="HSSP:1J7H"
FT                   /db_xref="InterPro:IPR006175"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHM2"
FT                   /protein_id="CAE33676.1"
FT                   /translation="MGLHSLNRCTTMTASISARVAELGLTLEPANAPAANYVPFVRDGN
FT                   LLYISGQVPRVDGKPVHLGRLGDSVSDEEGVQAARQAALGVLAQLAAATGDRLQGVARV
FT                   VRLGVFVAAAPDFNRHSAIANGASDLMVNVFGEAGRHARSAVGVASLPNGVAVEVEAVV
FT                   ALAQA"
FT   misc_feature    266198..266608
FT                   /note="HMMPfam hit to PF01042, DE Endoribonuclease L-PSP,
FT                   score 7.4e-18"
FT   CDS             266646..267854
FT                   /transl_table=11
FT                   /locus_tag="BB3185"
FT                   /product="probable class-V aminotransferase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1842"
FT                   /db_xref="GOA:Q7WHM1"
FT                   /db_xref="InterPro:IPR015422"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHM1"
FT                   /protein_id="CAE33677.1"
FT                   /translation="MPATLTDELVAVLRARTPGAQGAFIHFNHAGASLPSAGTLQAIEA
FT                   HLRLEATQGPMEAGVRAREQAERARLLAARLLNAQPAEVALTTGNSAGWGAAFAALGPW
FT                   RAGDRILVARHEWGGNLAAMRLAAQRAGATIETIASDESGAVDPGALQAMLDERVRLIA
FT                   LTWLPANGGLVNPAAAVGRIARRHGIAYFVDAAQAVGQLPIDVAEVGCDVLSGAGRKAL
FT                   RGPRGTGLLYVRQAFLERLAPAWVDTWSAPLGEDGCPIVRGDAARFESAENSVALRCGL
FT                   AHALHEALELDIASIRARIDAVATRLRTRLAALDGITLLDQGRVRSGLIAFDVAGWQAD
FT                   AVQRELARQGIALGCNGVAYTPLDMQARGLRQIARASVSYLTTEAEIDALLDALAALAR
FT                   RTP"
FT   misc_feature    266751..267815
FT                   /note="HMMPfam hit to PF00266, DE Aminotransferase class-V,
FT                   score 1.1e-08"
FT   misc_feature    267276..267338
FT                   /note="PS00595 Aminotransferases class-V
FT                   pyridoxal-phosphate attachment site."
FT   CDS             complement(267851..268624)
FT                   /transl_table=11
FT                   /gene="trmD"
FT                   /locus_tag="BB3186"
FT                   /product="tRNA (guanine-N1)-methyltransferase"
FT                   /EC_number="2.1.1.31"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1841"
FT                   /db_xref="GOA:Q7U384"
FT                   /db_xref="InterPro:IPR002649"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7U384"
FT                   /protein_id="CAE33678.1"
FT                   /translation="MRFDVVTLFPDMFGLVRDQGVTGRAHAQGLWALHAWNPRDFTQDV
FT                   HRTVDDRPYGGGPGMVMMAAPLEAAVAAAQAARAAQGLQAAPVILLSPAGRRYDQAEAT
FT                   TLAAGTGAIFICGRYEGVDQRFIERCVTHELSLGDFVLSGGELAALAMMDAAVRLLPGV
FT                   LNDGDSALQDSFNAALDGLLDSPHYTRPEVYEGVPVPQPLLSGHHANIARWRREQSLRL
FT                   TASRRPELIERARGEGRLSKADERFLAGLAGERKS"
FT   misc_feature    complement(267911..268561)
FT                   /note="HMMPfam hit to PF01746, DE tRNA
FT                   (Guanine-1)-methyltransferase, score 6.6e-103"
FT   CDS             complement(268624..269247)
FT                   /transl_table=11
FT                   /gene="rimM"
FT                   /locus_tag="BB3187"
FT                   /product="16S rRNA processing protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1840"
FT                   /db_xref="GOA:Q7WHM0"
FT                   /db_xref="InterPro:IPR002676"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WHM0"
FT                   /protein_id="CAE33679.1"
FT                   /translation="MSEAAHSGAAPADLVELGRIASAYGVKGWVKVQPHSAQAEVLRTV
FT                   SHWWLTRPAPQAARGVVASVPRAYQVLQARVHGGAVVAQLAGIDDRDQAEALRGCLVQA
FT                   ARSAFPAPADDEYYWVDLIGCALYSDADGESRLLGVVDEVFDNGAHAVLKVLRQQLQPG
FT                   QPGPVPLVDPKGRPLEELVPFVRAHIRHVDLAARRIDSDWPLDY"
FT   misc_feature    complement(268630..269202)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF01782, DE RimM, score 3e-25"
FT   CDS             complement(269413..269718)
FT                   /transl_table=11
FT                   /gene="rpsP"
FT                   /locus_tag="BB3188"
FT                   /product="30S ribosomal protein S16"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1839"
FT                   /db_xref="GOA:Q7WHL9"
FT                   /db_xref="InterPro:IPR000307"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WHL9"
FT                   /protein_id="CAE33680.1"
FT                   /translation="MLEFPVFHNQFKGLPMLVIRLARGGSKKRPFYNLVATDSRNRRDG
FT                   RFVERVGFYNPVAAEGTENLRIALDRVQYWTGNGALLSPAVERLVKEYSAKVSAAA"
FT   misc_feature    complement(269470..269652)
FT                   /note="HMMPfam hit to PF00886, DE Ribosomal protein S16,
FT                   score 3.2e-26"
FT   CDS             269977..270558
FT                   /transl_table=11
FT                   /locus_tag="BB3189"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1838"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHL8"
FT                   /protein_id="CAE33681.1"
FT                   /translation="MKHCSILAPLTRLAACGALAAVLAAPLPAAARVGDAALVSVTGQI
FT                   TAVDPATRTVTVRGPQGNEVPLQAGPDVRNFDRIKVGDTMRVDYYESVSIATRAKGSGV
FT                   PEVRSETVATRAKEGALPQGAVGRSTTITAEIWHIAKDGRTVILQGPQGGRETFHLRSA
FT                   AAQEKLRTLKEGDLVDFTVTRALAAAVRSR"
FT   misc_feature    269977..270000
FT                   /note="PS00443 Glutamine amidotransferases class-II active
FT                   site."
FT   misc_feature    269977..270069
FT                   /note="Signal peptide predicted for BB3189 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.796 between residues 31 and 32"
FT   CDS             complement(270627..270881)
FT                   /transl_table=11
FT                   /locus_tag="BB3190"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1837"
FT                   /db_xref="GOA:Q7WHL7"
FT                   /db_xref="HSSP:1DCJ"
FT                   /db_xref="InterPro:IPR001455"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHL7"
FT                   /protein_id="CAE33682.1"
FT                   /translation="MSASDTGGLPPYQHEVDASGLTCPLPILRAKKALAQMESGQVLRV
FT                   VTTDPNAIRDFQAFARQTGNTLLAQREAEGRGEHFLQRR"
FT   misc_feature    complement(270633..270848)
FT                   /note="HMMPfam hit to PF01206, DE Uncharacterized protein
FT                   family UPF0033, score 2.1e-19"
FT   CDS             complement(270868..273492)
FT                   /transl_table=11
FT                   /gene="alaS"
FT                   /gene_synonym="lovB"
FT                   /locus_tag="BB3191"
FT                   /product="alanyl-tRNA synthetase"
FT                   /EC_number="6.1.1.7"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1836"
FT                   /db_xref="GOA:Q7WHL6"
FT                   /db_xref="InterPro:IPR012947"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7WHL6"
FT                   /protein_id="CAE33683.1"
FT                   /translation="MKSSEIRQKFLQFFQSKGHTIVPSSSLVPANDPTLLFTNSGMVQF
FT                   KDVFTGKEARAYKRATSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRE
FT                   AIQYAWELLTQVYRLPAEKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYAS
FT                   DNFWQMADTGPCGPCSEIFYDHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGN
FT                   MERLPKPCVDTGMGLERIAAVLQHVHSNYEIDLFQKLIAAAARETGVKDLADNSLKVIA
FT                   DHIRACAFLIVDGIIPSNEGRGYVLRRIVRRALRHGYKLGQTKPFFHRLVPDLVAEMGE
FT                   AYPELAQVAERVAQVLRQEEERFGETLEHGMKILDGALAKVAKGDPLDGTTLFTLYDTY
FT                   GFPVDLTADICRERGVEVDMAGFEAAMQRQREQARAAGKFKMAEGLSYEGAETRFEGYE
FT                   SLELSGVKVTALYVEGTQVEQVSAGQDAVVVLDATPFYAESGGQVGDTGLLEAGGVRFA
FT                   VADTLKIQPGVFGHHGTLEAGALKVGDTLLARVDAVRRARTVRNHSATHLMHKALREVL
FT                   GAHVQQRGSLVDPDKTRFDFAHDAPMTAEQIARVEAIVNAEVLANQATEAKVMAYDDAV
FT                   KGGAMALFGEKYGDTVRVLDIGFSRELCGGTHVRRTGDIGLFKVVSEGGVAAGVRRIEA
FT                   ITGDNALAWVQDQNALLQRAAGVLRAPAHELPERIVQVQEQLKALEKELEQARTKLAAS
FT                   AGNDLAATATVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVLLAAGSADGKIS
FT                   LVGGVTADLTGRIKAGDLVGFVAGQVGGKGGGRPDMAMGGGTDLAALPAAVASVQKWVD
FT                   ERL"
FT   misc_feature    complement(270889..271107)
FT                   /note="HMMPfam hit to PF02272, DE DHHA1 domain, score
FT                   4.4e-14"
FT   misc_feature    complement(271387..273480)
FT                   /note="HMMPfam hit to PF01411, DE tRNA synthetases class II
FT                   (A), score 0"
FT   misc_feature    complement(272764..272793)
FT                   /note="PS00339 Aminoacyl-transfer RNA synthetases class-II
FT                   signature 2."
FT   CDS             complement(273564..274382)
FT                   /transl_table=11
FT                   /locus_tag="BB3192"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1835"
FT                   /db_xref="InterPro:IPR012902"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHL5"
FT                   /protein_id="CAE33684.1"
FT                   /translation="MRSAHTQGGLALLELAVAAALAAMAAVWAANRLVQDAQDAAARGA
FT                   GVWLGEIQRGLDQLLQRHFDTLADGLAPRDERGRALFRDAWRPTLPELQAAGLLARSLP
FT                   RRSPLGTGVIMLVRRDPHCPRAGCRLDALAWLDRPLLDGHGQVDLMRMAPLVAATAGRG
FT                   GFAVAGGVRGAAFRFANPPWPDVARLPAGTPLAWAGLAAGKASPAFGGAYSVNSHVGCR
FT                   SYSGHTSRNPLTGQCSCPPGYASVIMAQATDRVDGAPGFTSFVCVRPGKE"
FT   misc_feature    complement(274308..274382)
FT                   /note="Signal peptide predicted for BB3192 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.998) with cleavage site
FT                   probability 0.577 between residues 25 and 26"
FT   CDS             complement(274379..274984)
FT                   /transl_table=11
FT                   /locus_tag="BB3193"
FT                   /product="putative fimbrial protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1834"
FT                   /db_xref="InterPro:IPR001120"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHL4"
FT                   /protein_id="CAE33685.1"
FT                   /translation="MSHTILSGRQAGFSLVEVSIVTAIVLLVAIIGIPAIGSYVIESKV
FT                   PRVGEELQRFVARTKANAQGDGAAPYTGIGTASLAHALRDSSVVSVRGEGASATVAHGL
FT                   GGQGAGAHGVISVAPAAPGGAPPGSAFTLTLTNVNGAACPALASVMQRVSDIIAVQGKV
FT                   GPVVVKNALAVPALPYRAQAAQAQCVAGDRNTFAFTAR"
FT   misc_feature    complement(274880..274948)
FT                   /note="1 probable transmembrane helix predicted for BB3193
FT                   by TMHMM2.0 at aa 13-35"
FT   misc_feature    complement(274892..274954)
FT                   /note="PS00409 Prokaryotic N-terminal methylation site."
FT   CDS             complement(275022..276155)
FT                   /transl_table=11
FT                   /locus_tag="BB3194"
FT                   /product="putative general secretion pathway protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1833"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHL3"
FT                   /protein_id="CAE33686.1"
FT                   /translation="MAEHAALALAWRAAGALGQRLDAWRFGAERGDYYEYLADMLEGLQ
FT                   GRQTLRDIFETDAARHGEASVRGRLARRWLQRYQDCGGDLRATWARCLPEGDCTLLALA
FT                   QSAGGGALGIVLRDLAHLTRLTQGMRREFCVTIAAGLVAMTVACALLAAVPAFSAPRLR
FT                   LVFQAVPPDYHGAWSAGLFALARYVEAAWPAAVAALTAAVALVCWSLPRYAGRARVFLD
FT                   RWQPWRLYRDMQAIRFLALATVLLRQRGNIDTRLRTALLVQGADAPPWLAWHLERMLLR
FT                   VDAGVVDASVFDTGLFEPAHAWFMADMVAAHGLADGLARARTRVEAHMLPRLRRQAQGL
FT                   RWVLLLGAVGAVLALAFWHYAAIDDLRRALVSFYASQ"
FT   misc_feature    complement(join(275073..275141,275526..275594,
FT                   275691..275759))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BB3194 by TMHMM2.0 at aa 133-155, 188-210 and 339-361"
FT   CDS             complement(276148..277863)
FT                   /transl_table=11
FT                   /locus_tag="BB3195"
FT                   /product="putative general secretion pathway protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1832"
FT                   /db_xref="GOA:Q7WHL2"
FT                   /db_xref="HSSP:1P9R"
FT                   /db_xref="InterPro:IPR001482"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHL2"
FT                   /protein_id="CAE33687.1"
FT                   /translation="MRIRSHRPVLHSPCTTLAPFVADHEALGRLRPAFVRALAREFDLG
FT                   ALAGRLCPVLLEGSYAALFALADYVHGDQADELERLMRKRGYRLAAPARYVLPSPLLLA
FT                   VAREAAGAPGLHAADHPAQRRTALQALFFDMVRWGVRHGASDLHLHADRRAATAQVRYT
FT                   VGGAYVAAPCFNGLSHACLLEILAVAWMDVRAGNGAVFDPRAEQQGRIALQVDEVPVVL
FT                   RWASLATDHGPSVCLRILRQDPPQGGASLAELGYLPAQAATLERACQRAGGAVVLAGTV
FT                   GAGKSTTIATMLRGLPAERKLVTLEDPAEYAIANALQNSVSRSLEGEAGAPFDAKLLTI
FT                   KRSAMHDLYLGEVRDRQTGRVFTDLAGSGVSLYTTTHAGSALLIPERLASDFIGVSRDF
FT                   LATPGVLKLLVYQTLLPRLCPACALPLAMLWHRGAGRSHAQRLAWRCWAARLRRAGVAL
FT                   AQARVRNPAGCAACAGAGLPALRGYAGRTVVAELLEPETDAVLLDLIRRRDNPALRRLL
FT                   GRRARRQPPDAPLRAVDCAWRKVEAGVVDPRLVERCFALPPALRTPVGAEDGHG"
FT   misc_feature    complement(276598..277512)
FT                   /note="HMMPfam hit to PF00437, DE Type II/IV secretion
FT                   system protein, score 8.9e-10"
FT   misc_feature    complement(277006..277029)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             complement(277860..278243)
FT                   /transl_table=11
FT                   /locus_tag="BB3196"
FT                   /product="hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1831"
FT                   /db_xref="InterPro:IPR013838"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHL1"
FT                   /protein_id="CAE33688.1"
FT                   /translation="MRELLRRETLAAAQPPRPAAPAPWSDAPAARKAAPAAPGPRADRI
FT                   VLLAIYGVGAALRAEVSINRRHWRYLAGQRRPSGQAPEARYQLEAIAVPCVHLRSGAVR
FT                   RTACLAAAASLDNGAASAAGAAP"
FT   CDS             complement(278341..279609)
FT                   /transl_table=11
FT                   /locus_tag="BB3197"
FT                   /product="hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1830"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHL0"
FT                   /protein_id="CAE33689.1"
FT                   /translation="MRAATHPPLVLQQTQGGPMLAFGLTWFAVLGSHAALQGRARALRA
FT                   THYLVGGRHAVAAGCARLPRRYGALALHSAAQAYASLHPDGAQAGVASLPDGQGWLIAV
FT                   QDGAVLASADRLFADVAQAQACLRTLLAQRPDLREVPAQAALDTLLARPDPSARLAPLA
FT                   SRWSRAPVAARAVVLALAVAGGASLWRGLRQAPPPAAPDPRAVWRAAQAEFLRGWPVHT
FT                   SSELARVLDTLQALPLRVAGWALRQAQCVPGPAWHCDADYHRVDAAATSLAFAAAVPPG
FT                   WQMRLHTLEHTRVAWTLAGDQHGLDRTAPASPADTLALAATLQRASAAFTHVSVGAAQA
FT                   LAGPAWDGPPELAPPAAPELRRREVVLDGPLRSLALVWPLPAPIGWATVSLRVVPDAIA
FT                   TLRASVLSLHLQGSLYEQTTSRS"
FT   CDS             complement(279613..281190)
FT                   /transl_table=11
FT                   /locus_tag="BB3198"
FT                   /product="lipoprotein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1829"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHK9"
FT                   /protein_id="CAE33690.1"
FT                   /translation="MKARRLAMAGLSLALGGCSLSQQMQAMRDAATSLRARLLEGQQAV
FT                   GRAGERPAREAAQDVARPWLAGRAQPLAREVLLPPALRADVDTTLLFAGKATLPVLAER
FT                   LHRATGIAVRVHPDALLPRAAFLPRLAGPAELAAEPPAQAELRAGPRPLADTLDALAAQ
FT                   LYVHWRYHRGAIEFYRTETRVFDVRTLALAASAQARLGRAGSGETGSFDHASSTVLSAD
FT                   AGKALQAVRDRVAAFLTRAGVIAEIEAGGSTLAVTDTPEALARIEKYLQGENRALTRRV
FT                   RLVFEELTVRTTAAAEGGIDWQAVYASARAAASYAMPGGAGAAGALGARVLAGPWRDAR
FT                   ALIAALSTMGAVLRHRSIPMLTLNRRAVTHAVRTTFSYVDQVQRLSPTAAAPGGRDAVP
FT                   GLAVQQKRETVGTFLTLLPEARDDGRILLSISYDNTIAQPLRTLTFGEGGQQVSLQQIA
FT                   IDGSGIVQQVELLPGQPVILSGFDHSEDQYERHRLFPDAPLAAGGHDRTARERVTTVVM
FT                   VTAQIDEG"
FT   misc_feature    complement(279619..280458)
FT                   /note="HMMPfam hit to PF00263, DE Bacterial type II and III
FT                   secretion system protein, score 0.0023"
FT   misc_feature    complement(281128..281190)
FT                   /note="Signal peptide predicted for BB3198 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.463 between residues 21 and 22"
FT   misc_feature    complement(281137..281169)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(281187..281948)
FT                   /transl_table=11
FT                   /locus_tag="BB3199"
FT                   /product="putative lipoprotein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1828"
FT                   /db_xref="InterPro:IPR010258"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHK8"
FT                   /protein_id="CAE33691.1"
FT                   /translation="MVRSLSIVCLLAVLQACAGPRPAAVAAAWDEAPAGQYRFDWQLSG
FT                   DPAVAPLQVFDDARRIWLQFAPGQPIPAIFAHGAGGERPVPYLRRDPYIVVDGAWPALS
FT                   LRGGRYVARIQRSGAPIPAGAPVVRAEGPAPVPATPSAVAPAEAAEAAPPAPRFRAAPP
FT                   DLTLRAVLARWARAAGWTFEAEHWALDVDIPLAGKAELPGDFKTAVRALLAATELSERP
FT                   AQPCFYANRVLRVVPLAQACDRTRAAAPGLT"
FT   misc_feature    complement(281688..281720)
FT                   /note="PS00133 Zinc carboxypeptidases, zinc-binding region
FT                   2 signature."
FT   misc_feature    complement(281871..281948)
FT                   /note="Signal peptide predicted for BB3199 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.999) with cleavage site
FT                   probability 0.403 between residues 26 and 27"
FT   misc_feature    complement(281898..281930)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(282126..283481)
FT                   /transl_table=11
FT                   /locus_tag="BB3200"
FT                   /product="putative amidase"
FT                   /EC_number="3.5.1.4"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1827"
FT                   /db_xref="GOA:Q7WHK7"
FT                   /db_xref="InterPro:IPR000120"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHK7"
FT                   /protein_id="CAE33692.1"
FT                   /translation="MTSTDQHIARAGVAELARGIARGAFTPAEVTDVFLRRIQDLNPAI
FT                   GAFVAVYEDEARHAARQATQALAQGQRLSPLHGIPFAVKDIVDVAGRFTTYGSRTGAGR
FT                   QAGATAEYVRALLDAGMILLGKTHTVEFAFGGWGTNQRMGTPRNPLRADVPCATGGSSS
FT                   GSGAAVGAQMVPFAVGTDTGGSIRIPSAFCGLTGMRPSMGRHSGAGVMSLSHTLDTIGP
FT                   LARTVEDVQMLDDLLTGKTATDTAQPGSQAVARVRDARIGVLGAQWLGAIEPEVAHAYA
FT                   QSLRAFEAMGATLVELALPFDREAFAQLTSTLIACEGLQFAGKYVHDPLSGMDEDVRAR
FT                   FLVGDRYDAAAYAELLGRRSAMIDTFTQAMAGVKALLMPTTPCVAQPLAGLEQSPYNPA
FT                   VYTRMPAWLGCCALAVPNGSGAHGLPTSLQIVGLPESDRLVMSLGRAYQEYA"
FT   misc_feature    complement(282159..283397)
FT                   /note="HMMPfam hit to PF01425, DE Amidase, score 5.6e-95"
FT   misc_feature    complement(282387..282437)
FT                   /note="PS00216 Sugar transport proteins signature 1."
FT   misc_feature    complement(282912..283007)
FT                   /note="PS00571 Amidases signature."
FT   misc_feature    complement(283101..283124)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             complement(283478..285112)
FT                   /transl_table=11
FT                   /locus_tag="BB3201"
FT                   /product="probable ATP-binding component of ABC
FT                   transporter"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1826"
FT                   /db_xref="GOA:Q7WHK6"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHK6"
FT                   /protein_id="CAE33693.1"
FT                   /translation="MIENTPKQRVLEVSGLAIRAGARTLVQDVTLSLAQGEILCLVGES
FT                   GSGKSLTASAVMGLLPGNLGVSAGSIRLDGEDLTAASPARMQALRGDRMAMVFQEPMTS
FT                   LNPLMRVGRQIAEVLQVHRPDLGAGQVRARVLELMGDVRLPTPEALMDAFPHQLSGGQR
FT                   QRIMIAMALALEPALIIADEPTTALDVTTQAQVLKLFRQLLAKHSSAVLFITHDFDVVR
FT                   DIADHVAVMQLGRIVEQGPAGQVLDAPRHDYTRKLLAAVPSGVPKTQQNASSDELLSVS
FT                   GLNLVYESRGLLGPARRTHAVADVGFTLKKGETLGVVGESGSGKSTLGRCITRAHAPTS
FT                   GRIVFDGVDIAGLSGKALRAVRRRVQMVFQDPYRSLNPRRRILHALIEGPIESGVDRKA
FT                   ACARAAELMALVGLPADGLQRYPHQFSGGQRQRICIARALAMEPDLIVADEAVSALDVS
FT                   VQAQVLELFEDLQKRLGFAMIFITHDLRVAAQVCDRIGVMQKGRLLELGPVRQVIHAPQ
FT                   HPYTRHLFDSLPGRVGQAAEPAMELQA"
FT   misc_feature    complement(283610..284179)
FT                   /note="HMMPfam hit to PF00005, DE ABC transporter, score
FT                   5.7e-61"
FT   misc_feature    complement(283796..283840)
FT                   /note="PS00211 ABC transporters family signature."
FT   misc_feature    complement(284135..284158)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    complement(284411..285007)
FT                   /note="HMMPfam hit to PF00005, DE ABC transporter, score
FT                   1.6e-57"
FT   misc_feature    complement(284597..284641)
FT                   /note="PS00211 ABC transporters family signature."
FT   misc_feature    complement(284963..284986)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             complement(285105..285935)
FT                   /transl_table=11
FT                   /locus_tag="BB3202"
FT                   /product="probable probable inner membrane component of
FT                   binding-protein-dependent transport system"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1825"
FT                   /db_xref="GOA:Q7WHK5"
FT                   /db_xref="InterPro:IPR000515"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHK5"
FT                   /protein_id="CAE33694.1"
FT                   /translation="MTSILRHNRLALLGGGVLLLMVAISVAASWIASMDPAMMQPRMRL
FT                   TPPGEAFLLGTDALGRDVYSRVVHGSRMSLAIGALVVVITIAIGTLIGLVAGASRIMDR
FT                   VLMRIMDGVMAIPGILLAVALVSLFGASLASVVIAIAVPEIPRVVRLVRSVVLSVREEP
FT                   YVEAAVGLGVPYPKVVWRHILPNCFAPLIVQASYVFAAAILLEAVLGFLGVGFPPEIPT
FT                   FGNILAEARPVFQRAPWATVAPGLLLAVTVLAVNLLGDGLRDSLDPKLARRAND"
FT   misc_feature    complement(join(285159..285227,285288..285356,
FT                   285513..285581,285642..285710,285834..285902))
FT                   /note="5 probable transmembrane helices predicted for
FT                   BB3202 by TMHMM2.0 at aa 12-34, 76-98, 119-141, 194-216 and
FT                   237-259"
FT   misc_feature    complement(285249..285470)
FT                   /note="HMMPfam hit to PF00528, DE Binding-protein-dependent
FT                   transport systems inner membrane component, score 6.1e-05"
FT   misc_feature    complement(285381..285467)
FT                   /note="PS00402 Binding-protein-dependent transport systems
FT                   inner membrane comp. sign."
FT   misc_feature    complement(285855..285935)
FT                   /note="Signal peptide predicted for BB3202 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.690 between residues 27 and 28"
FT   CDS             complement(285953..286897)
FT                   /transl_table=11
FT                   /locus_tag="BB3203"
FT                   /product="probable inner membrane component of
FT                   binding-protein-dependent transport system"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1824"
FT                   /db_xref="GOA:Q7WHK4"
FT                   /db_xref="InterPro:IPR000515"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHK4"
FT                   /protein_id="CAE33695.1"
FT                   /translation="MQILRLLFLRLASAIPVVLVVVTVVFLLVRLTGDPATILAGDMAS
FT                   PEVVASVRADLGLDRPLLGQYAQWLWDLLQGNLGTSIVTKQPVATLIGERLESTLVLSL
FT                   SALVVTVLLAVPLGVLAAWRHNTLVDRVVMIYAVIGFSLPSFVVGYLLILMFSVWLGWL
FT                   PVQGYVSITDDIWLAAQHLVLPTLALAIFYMSLISRVTRASVLEVLNEDFVRTAKAKGV
FT                   PPLRILSQHVLRNAAIPIVTVIGIGLAFLISGVVITESVFNLPGLGRLTIDAVLSRDYP
FT                   VVQGVILFFACVYILVNLLIDMLYVVIDPRIRY"
FT   misc_feature    complement(join(285974..286042,286124..286192,
FT                   286307..286375,286433..286501,286535..286603,
FT                   286811..286879))
FT                   /note="6 probable transmembrane helices predicted for
FT                   BB3203 by TMHMM2.0 at aa 7-29, 99-121, 133-155, 175-197,
FT                   236-258 and 286-308"
FT   misc_feature    complement(286022..286054)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    complement(286070..286285)
FT                   /note="HMMPfam hit to PF00528, DE Binding-protein-dependent
FT                   transport systems inner membrane component, score 1.8e-06"
FT   misc_feature    complement(286106..286180)
FT                   /note="PS00043 Bacterial regulatory proteins, gntR family
FT                   signature."
FT   misc_feature    complement(286196..286282)
FT                   /note="PS00402 Binding-protein-dependent transport systems
FT                   inner membrane comp. sign."
FT   misc_feature    complement(286838..286897)
FT                   /note="Signal peptide predicted for BB3203 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.692) with cleavage site
FT                   probability 0.226 between residues 20 and 21"
FT   CDS             complement(286950..288524)
FT                   /transl_table=11
FT                   /locus_tag="BB3204"
FT                   /product="probable extracellular solute-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1823"
FT                   /db_xref="GOA:Q7WHK3"
FT                   /db_xref="InterPro:IPR000914"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHK3"
FT                   /protein_id="CAE33696.1"
FT                   /translation="MRYLKSTYAAVLLAIGTAVPHATTLAQEVKVAAEAPLRLLDPVGT
FT                   TAYITRNHAYMVYDTLFALDAQLKPQPQMVSTWSVSPDKLVYRFTLRDGLKFHDGSPVT
FT                   AADCVASIKRWAQRDLTGLRMMAAAKEITAKDDKTFEIVLEQPFGAVIEGLSKASSLPA
FT                   FIMPKRIADAPASQAITEVIGSGPFRFVASEYRPGLQVVYERNTDYVPRSEPPSGLAGG
FT                   KVVNVDRVVWLSLPDIQTEANALAKGEVDYVQTVYPDVVQTLQASKDVVIQKLASTTTP
FT                   TLRLNWLQPPFNNQKVRQALLHAVSQRDYMDAQVGDPKAYRVCWAMFGCDSPLASTAGV
FT                   VSQDDEADLNAAKALLKESGYKNEKAVVLHATDYPPTSAIAPFTAQILRSIGMKAEVQS
FT                   MDWATFLTRRGKQDPVEKGGWSVAYGSWNTLDLMSPIANLNLDGRGKEGYAGWTESAEM
FT                   ESLRTQYAQATEPASRQQIAAKIQQLAYDQVFYIPLGTYSNYAARRSNVTPLLDAPVTV
FT                   FWGISKN"
FT   misc_feature    complement(286956..288509)
FT                   /note="HMMPfam hit to PF00496, DE Bacterial extracellular
FT                   solute-binding proteins, family 5, score 4.3e-17"
FT   misc_feature    complement(288447..288524)
FT                   /note="Signal peptide predicted for BB3204 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.997) with cleavage site
FT                   probability 0.782 between residues 26 and 27"
FT   CDS             complement(288572..288922)
FT                   /transl_table=11
FT                   /locus_tag="BB3205"
FT                   /product="hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1822"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHK2"
FT                   /protein_id="CAE33697.1"
FT                   /translation="MLVPLFRVAHARTGDKGDRSNISVIAWDRALYPLLVEQLTPEVVL
FT                   AQFAHRRPAGAQRYLLPKLGAMNFVLDAVLDGGVNGALNLDAHGKALSYLILKTEIAVP
FT                   SDLVCRLAGSPG"
FT   CDS             complement(288924..290300)
FT                   /transl_table=11
FT                   /locus_tag="BB3206"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1821"
FT                   /db_xref="InterPro:IPR010839"
FT                   /db_xref="UniProtKB/TrEMBL:Q7WHK1"
FT                   /protein_id="CAE33698.1"
FT                   /translation="MRSLPSLLIGCAAGFSGDRVDAAGPVVDTLIARLGGVPANGRAFL
FT                   IFETLAERTLALAQLRKRADAQAGYEPLLEDMLGPVLARCLAHGIRIVSNFGAANPEGA
FT                   ARHILRMAARLGLRKPRIAVVKGDDVSGAQHAGMLAEYLGEQYDPSSIVSANAYLGSEQ
FT                   IRDALDHGAEIVVCGRVADPSLTVGPAMSYFGWQADDWDRIGRATMAGHLLECGAQVCG
FT                   GYYADPGYKDVPGLEQVGFPVAEIDEDGHCIIGKSDGTGGLVDEATVIEQLLYEVHDPA
FT                   GYLTPDVVADISQAEVRRVADNQVRLTGVRGHPRPAAYKVNVCLEGGWLAEGEISYAGP
FT                   RAEARARLAAEVVCKRLADLRIRTDLIGRVSIFGDDAGRLLAGAPAGDGEDVRLRLAAH
FT                   AVTRQDAMRLTREVTALYCCGPAGGGGVRTTLTPRLDMVSCLLPRDLVRAGFEMVDADV
FT                   "
FT