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EBI DbfetchID BX640437; SV 1; linear; genomic DNA; STD; PRO; 347356 BP. XX AC BX640437; XX DT 09-AUG-2003 (Rel. 76, Created) DT 29-JUL-2008 (Rel. 96, Last updated, Version 5) XX DE Bordetella bronchiseptica strain RB50, complete genome; segment 1/16 XX KW complete genome. XX OS Bordetella bronchiseptica OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Bordetella. XX RN [2] RP 1-347356 RA Sebaihia M.; RT ; RL Submitted (06-AUG-2003) to the EMBL/GenBank/DDBJ databases. RL Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute, RL Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail: RL ms5@sanger.ac.uk XX RN [3] RA Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E., RA Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., RA Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A., RA Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I., RA Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., RA Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., RA Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., RA Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., RA Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., RA Barrell B.G., Maskell D.J.; RT "Comparative analysis of the genome sequences of Bordetella pertussis, RT Bordetella parapertussis and Bordetella bronchiseptica"; RL Nat. Genet. 35(1):0-0(2003). XX DR EMBL-CON; BX470250. DR RFAM; RF01057; SAH_riboswitch. XX FH Key Location/Qualifiers FH FT source 1..347356 FT /organism="Bordetella bronchiseptica" FT /strain="RB50" FT /mol_type="genomic DNA" FT /db_xref="taxon:518" FT CDS 1..1920 FT /transl_table=11 FT /gene="gidA" FT /locus_tag="BB0001" FT /product="glucose inhibited division protein A" FT /note="ortholog of Bordetella pertussis (BX470248) BP0001" FT /db_xref="GOA:Q7WRF1" FT /db_xref="InterPro:IPR002218" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRF1" FT /protein_id="CAE30503.1" FT /translation="MDFPREFDVIVVGGGHAGTEAALAAARAGAQTLLLTHNIETLGQM FT SCNPSIGGIGKGHLVKEVDALGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRVLY FT RNAIRARLENQPNLWLFQQAVDDLMVQGDQVVGAVTQIGLRFRARTVVLTAGTFLNGLI FT HVGLQNYSGGRAGDPPANSLGQRLKELQLPQGRLKTGTPPRIDGRSINYSVLEEQPGDL FT DPVPVFSFLGKASMHPRQLPCWITHTNARTHEIIRGGLDRSPMYSGVIEGVGPRYCPSI FT EDKIHRFADKASHQVFLEPEGLNTHEIYPNGVSTSLPFDVQYELIHSLPGLENAHILRP FT GYAIEYDYFDPRALKSTLETKAISGLFFAGQINGTTGYEEAAAQGLLAGANAALQAQGK FT EPWVPRRDEAYLGVLVDDLVTRGVTEPYRMFTSRAEYRLSLREDNADLRLTEIGRRLGL FT VDDVRWDAFSRKRDAVAQEVERLKSTWVNPRVLPAHAAEALLGKAIEREYSLSDLLKRP FT NVSYEALMQARTDEGELLAGPGVLEDDVLAEQVETQVKYAGYIARQQDEVQKHLSHEQQ FT PIPADIDYDAVTSLSFEVRQKLKTHRPETIGQAARVSGVTPAAISLLLIHLKRLHYGSR FT KQAA" FT misc_feature 19..1893 FT /note="HMMPfam hit to PF01134, DE Glucose inhibited FT division protein A, score 0" FT misc_feature 820..864 FT /note="PS01280 Glucose inhibited division protein A family FT signature 1." FT misc_feature 1810..1875 FT /note="Predicted helix-turn-helix motif with score FT 1129.000, SD 3.03 at aa 604-625, sequence FT ETIGQAARVSGVTPAAISLLLI" FT CDS 1917..2549 FT /transl_table=11 FT /gene="gidB" FT /locus_tag="BB0002" FT /product="glucose inhibited division protein B" FT /note="ortholog of Bordetella pertussis (BX470248) BP0002" FT /db_xref="GOA:Q7WRF0" FT /db_xref="InterPro:IPR003682" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRF0" FT /protein_id="CAE30504.1" FT /translation="MSAVPDIPGGPAQRLAQACDALRLPADAGQQQKLLRYIEQMQRWN FT RTYNLTAIRDPGQMLVQHLFDSLSVVAPLERGLPGVVLAIMRAHWDVTCVDAVEKKTAF FT VRQMAGALGLPNLQAAHTRIEQLEPAQCDVVISRAFASLQDFAKLAGRHVREGGTLVAM FT KGKVPDDEIQALQQHGHWTVERIEPLVVPALDAQRCLIWMRRSQGNI" FT misc_feature 1917..2135 FT /note="PS00430 TonB-dependent receptor proteins signature FT 1." FT misc_feature 2004..2519 FT /note="HMMPfam hit to PF02527, DE Glucose inhibited FT division protein, score 4.7e-42" FT CDS 2546..3343 FT /transl_table=11 FT /gene="parA" FT /gene_synonym="soj" FT /locus_tag="BB0003" FT /product="ParA family protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0003" FT /db_xref="GOA:Q7WRE9" FT /db_xref="HSSP:1IHU" FT /db_xref="InterPro:IPR002586" FT /db_xref="UniProtKB/TrEMBL:Q7WRE9" FT /protein_id="CAE30505.1" FT /translation="MKNIPPSKSARVFCIANQKGGVGKTTTAINLAAGLATHKQRVLLV FT DLDPQGNATMGSGIDKSTLESNLYQVLIGEAGIEQTRVRSESGGYDVLPANRELSGAEI FT DLVQMDERERQLKAAIDKIAGEYDFVLIDCPPTLSLLTLNGLAAAHGVIIPMQCEYFAL FT EGLSDLVNTIKRVHRNINNELRVIGLLRVMFDPRMTLQQQVSAQLESHFGDKVFTTVVP FT RNVRLAEAPSYGMPGVVYDRASRGAQAYIAFGAEMIERVKELD" FT misc_feature 2819..3154 FT /note="HMMPfam hit to PF00991, DE ParA family ATPase, score FT 1.5e-33" FT CDS 3350..4156 FT /transl_table=11 FT /locus_tag="BB0004" FT /product="Putative acetyltransferase, GnaT family" FT /note="ortholog of Bordetella pertussis (BX470248) BP0004" FT /db_xref="GOA:Q7WRE8" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:Q7WRE8" FT /protein_id="CAE30506.1" FT /translation="MPAVLAVPAAHPAPAAGGELARLEEAALNATTVREQMLYEGWLVR FT WAPSRAKRARCVNVLGLSTRPLDERLAYCTRWYAGHGVPLIVRLTSIGPDFSLDAQLHE FT RGFVAFDRTCVMAAPVVPFTAQAPSGLVFERTTPGRFAQEAGRLRGHDDAATAEHAARL FT QAAPLENLPLLVRDASGECIAAGLAAFDAELVGLFDIVTAPQRRRQGCGAAVLKYLLEQ FT ASHAGARQAYLQVEPQNTAARALYARFGFVDRYTYWYRSMSEATPV" FT misc_feature 3869..4105 FT /note="HMMPfam hit to PF00583, DE Acetyltransferase (GNAT) FT family, score 2.5e-14" FT CDS 4200..5117 FT /transl_table=11 FT /gene="parB" FT /locus_tag="BB0005" FT /product="probable chromosome partitioning protein ParB" FT /note="ortholog of Bordetella pertussis (BX470248) BP0005" FT /db_xref="GOA:Q7WRE7" FT /db_xref="InterPro:IPR004437" FT /db_xref="UniProtKB/TrEMBL:Q7WRE7" FT /protein_id="CAE30507.1" FT /translation="MATKKPKGLGRGLDALLGADVPAIDNIGKAPAAAPEGPPATLPVS FT KMRAGKYQPRTRMDEGALNELAESIRTQGIMQPILVRALGADAPGQYEIIAGERRFRAA FT QLAGLKEVPVLVREVADENAAVMALIENIQREDLNPLEEAHGVRRLLDEFGLTHEQAAQ FT AIGRSRSATSNLLRLLNLAAPVQTMLLAGDVDMGHARALLAVDAATQIQLANQVIAKRL FT SVREAEKLVARAQKDVDAAPRKKGNGASRDVTRLEEALSDHLGTRVALKVGAREKGQIV FT IDFHGWEHLNSLLERQGLSGVVDA" FT misc_feature 4317..4598 FT /note="HMMPfam hit to PF02195, DE ParB-like nuclease FT domain, score 5.9e-34" FT misc_feature 4665..4730 FT /note="Predicted helix-turn-helix motif with score FT 1537.000, SD 4.42 at aa 156-177, sequence FT LTHEQAAQAIGRSRSATSNLLR" FT CDS 5110..6111 FT /transl_table=11 FT /gene="ansB" FT /locus_tag="BB0006" FT /product="L-asparaginase II precursor" FT /EC_number="3.5.1.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP0006" FT /db_xref="GOA:Q7WRE6" FT /db_xref="HSSP:1HG1" FT /db_xref="InterPro:IPR006034" FT /db_xref="UniProtKB/TrEMBL:Q7WRE6" FT /protein_id="CAE30508.1" FT /translation="MPEARLPRIAVLATGGTIAGAQTDAASGAYRAGSYGVGQLLAAVP FT QLAGLARIGAEQIANVGSQNMSHAVWRQLALRAAALCDDPATDGIVITHGTDTLEETAY FT FLSLVLPVDKPVVLLGAMRPATALSADGPVNLYNAVALACHPAARGRGPLVVMNEDIHL FT ARHVQKTAASGIAAFASPNAGRAGVMQGGRPVFHARAERQAADALLRPDELPQQAWPRV FT DIVHACVDLDGELIDFMAGRAQGIVLAGVGDGNATDAALQALQRASARGVAVVRASRTG FT SGRVGRNIEIDDDACGFIAAGDLSPQKARVLLTLGLCQTRDTARLQALFDSR" FT misc_feature 5110..5172 FT /note="Signal peptide predicted for BB0006 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.722) with cleavage site FT probability 0.254 between residues 21 and 22" FT misc_feature 5140..5166 FT /note="PS00144 Asparaginase / glutaminase active site FT signature 1." FT misc_feature 5158..6093 FT /note="HMMPfam hit to PF00710, DE Asparaginase, score FT 6.4e-100" FT misc_feature 5374..5406 FT /note="PS00917 Asparaginase / glutaminase active site FT signature 2." FT tRNA 6221..6307 FT /note="tRNA Tyr anticodon GTA, Cove score 72.20" FT tRNA 6496..6569 FT /note="tRNA Gly anticodon TCC, Cove score 82.17" FT tRNA 6576..6650 FT /note="tRNA Thr anticodon GGT, Cove score 86.85" FT CDS 6707..7897 FT /transl_table=11 FT /gene="tuf" FT /gene_synonym="tufA" FT /locus_tag="BB0007" FT /product="elongation factor Tu" FT /note="ortholog of Bordetella pertussis (BX470248) BP0007" FT /db_xref="GOA:Q79G84" FT /db_xref="HSSP:1AIP" FT /db_xref="InterPro:IPR004160" FT /db_xref="UniProtKB/Swiss-Prot:Q79G84" FT /protein_id="CAE30509.1" FT /translation="MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLSNKFGGEAR FT GYDQIDAAPEEKARGITINTSHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAIL FT VVSAADGPMPQTREHILLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSKYDF FT PGDDTPIVKGSAKLALEGDKGELGEQAILSLAQALDTYIPTPERAVDGAFLMPVEDVFS FT ISGRGTVVTGRIERGVVKVGEEIEIVGIKPTVKTTCTGVEMFRKLLDQGQAGDNVGILL FT RGTKREDVERGQVLAKPGSINPHTDFTAEVYILSKEEGGRHTPFFNGYRPQFYFRTTDV FT TGTIDLPADKEMVLPGDNVSMTVKLLAPIAMEEGLRFAIREGGRTVGAGVVAKIIK" FT misc_feature 6734..7324 FT /note="HMMPfam hit to PF00009, DE Elongation factor Tu GTP FT binding domain, score 8.5e-98" FT misc_feature 6761..6784 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 6857..6904 FT /note="PS00301 GTP-binding elongation factors signature." FT misc_feature 7358..7594 FT /note="HMMPfam hit to PF03144, DE Elongation factor Tu FT domain 2, score 5e-29" FT misc_feature 7604..7891 FT /note="HMMPfam hit to PF03143, DE Elongation factor Tu FT C-terminal domain, score 4.5e-60" FT tRNA 8008..8083 FT /note="tRNA Trp anticodon CCA, Cove score 85.26" FT CDS 8136..8516 FT /transl_table=11 FT /gene="secE" FT /gene_synonym="prlG" FT /locus_tag="BB0008" FT /product="preprotein translocase SecE subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP0008" FT /db_xref="GOA:Q7WRE5" FT /db_xref="InterPro:IPR005807" FT /db_xref="UniProtKB/TrEMBL:Q7WRE5" FT /protein_id="CAE30510.1" FT /translation="MSNTSIETVTSTADRIKLGLAVLVVIAGIVGFSMLDAQPMVARIG FT VFVGGLVVAALLAWFSEPGRRTLSFAGESYNEVKRVSWPTRKETIQMTGIVFAFVAVMG FT LLMWVLDKGIEWVLYGLLLGWK" FT misc_feature join(8181..8240,8250..8318,8412..8465) FT /note="3 probable transmembrane helices predicted for FT BB0008 by TMHMM2.0 at aa 16-35, 39-61 and 93-110" FT misc_feature 8331..8501 FT /note="HMMPfam hit to PF00584, DE SecE/Sec61-gamma subunits FT of protein translocation complex, score 5.5e-16" FT CDS 8526..9059 FT /transl_table=11 FT /gene="nusG" FT /locus_tag="BB0009" FT /product="transcription antitermination protein NusG" FT /note="ortholog of Bordetella pertussis (BX470248) BP0009" FT /db_xref="GOA:Q7WRE4" FT /db_xref="InterPro:IPR005824" FT /db_xref="UniProtKB/TrEMBL:Q7WRE4" FT /protein_id="CAE30511.1" FT /translation="MSKRWYVVHVYSGMEKSVQKALNERIERAELQTSFGRILVPSEEV FT VEVKGGQKSITERRIFPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPTPISEREV FT EKILNQMEEGVEKPRPKILFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGR FT ATPVELDFSQVEKT" FT misc_feature 8529..8660 FT /note="HMMPfam hit to PF02357, DE Transcription termination FT factor nusG, score 1.3e-13" FT misc_feature 8895..9008 FT /note="HMMPfam hit to PF00467, DE KOW motif, score 8.6e-09" FT misc_feature 9003..9032 FT /note="PS01014 Transcription termination factor nusG FT signature." FT CDS 9123..9554 FT /transl_table=11 FT /gene="rplK" FT /gene_synonym="relC" FT /locus_tag="BB0010" FT /product="50S ribosomal protein L11" FT /note="ortholog of Bordetella pertussis (BX470248) BP0010" FT /db_xref="GOA:Q7WRE3" FT /db_xref="InterPro:IPR006519" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRE3" FT /protein_id="CAE30512.1" FT /translation="MAKKIVGFIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAK FT TQGMEPGLPIPVVITAFADKSFTFIMKTPPATVLIKKASGVQKGSAKPHTDKVGTLTRA FT QAEEIAKTKQPDLTAADLDAAVRTIAGSARSMGITVEGV" FT misc_feature 9144..9323 FT /note="HMMPfam hit to PF03946, DE Ribosomal protein L11, FT N-terminal domain, score 3.9e-33" FT misc_feature 9336..9542 FT /note="HMMPfam hit to PF00298, DE Ribosomal protein L11, FT RNA binding domain, score 2.3e-34" FT misc_feature 9501..9548 FT /note="PS00359 Ribosomal protein L11 signature." FT CDS 9557..10255 FT /transl_table=11 FT /gene="rplA" FT /locus_tag="BB0011" FT /product="50S ribosomal protein L1" FT /note="ortholog of Bordetella pertussis (BX470248) BP0011" FT /db_xref="GOA:Q7WRE2" FT /db_xref="HSSP:1AD2" FT /db_xref="InterPro:IPR016094" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRE2" FT /protein_id="CAE30513.1" FT /translation="MAKLSKRAAAIAQKIDRTKLYPVGEALNLVKETATAKFDESIDVA FT VQLGIDPKKSDQLVRGSVVLPAGTGKTVRVAVFAQGEKADAARAAGADIVGLDDLAEQI FT KAGQMDFDVVIASPDTMRVVGALGQVLGPRGLMPNPKVGTVTPDVATAVKNAKAGQIQY FT RTDKAGIIHATIGRASFGVEQLQNNLAALVDALQKARPAAAKGIYLRKLAVSSTMGGGA FT RVEIASLSAN" FT misc_feature 9599..10219 FT /note="HMMPfam hit to PF00687, DE Ribosomal protein FT L1p/L10e family, score 1.3e-117" FT misc_feature 9917..9973 FT /note="PS01199 Ribosomal protein L1 signature." FT CDS 10498..11022 FT /transl_table=11 FT /gene="rplJ" FT /locus_tag="BB0012" FT /product="50S ribosomal protein L10" FT /note="ortholog of Bordetella pertussis (BX470248) BP0013" FT /db_xref="GOA:Q7WRE1" FT /db_xref="InterPro:IPR002363" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRE1" FT /protein_id="CAE30514.1" FT /translation="MSLNRQEKAVVIEEVSAQVAKAQSIVIAEYRGLDVASVTVLRKTA FT RESGVYLRVLKNTLVRRAVAGTAFEPLSEQLTGPLIYGISADPVAAAKVLAGFAKSNDK FT LVIKAGSLPNSLLTQDGVKALATMPSREELLSKLLGTMQAPIAQFVRTLNEVPTKFARG FT LAAVRDQKAAA" FT misc_feature 10504..10797 FT /note="HMMPfam hit to PF00466, DE Ribosomal protein L10, FT score 1.5e-22" FT CDS 11104..11487 FT /transl_table=11 FT /gene="rplL" FT /locus_tag="BB0013" FT /product="50S ribosomal protein L7/L12" FT /note="ortholog of Bordetella pertussis (BX470248) BP0014" FT /db_xref="GOA:Q7WRE0" FT /db_xref="HSSP:1CTF" FT /db_xref="InterPro:IPR013823" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRE0" FT /protein_id="CAE30515.1" FT /translation="MALSKAEILDAIAGMSVLELSELIKEMEEKFGVSAAAAAVAVAAP FT AAGGAGAAAAEEQTEFTVVLLEAGANKVSVIKAVRELTGLGLKEAKDLVDGAPKPVKEA FT LPKADAEAAKKKLEEAGAKVEVK" FT misc_feature 11281..11481 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00542, DE Ribosomal protein L7/L12 FT C-terminal domain, score 3.1e-37" FT CDS 11623..15759 FT /transl_table=11 FT /gene="rpoB" FT /gene_synonym="groN" FT /gene_synonym="nitB" FT /gene_synonym="rif" FT /gene_synonym="ron" FT /gene_synonym="stl" FT /gene_synonym="stv" FT /gene_synonym="tabD" FT /locus_tag="BB0014" FT /product="DNA-directed RNA polymerase beta chain" FT /EC_number="2.7.7.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP0015" FT /db_xref="GOA:Q7WRD9" FT /db_xref="InterPro:IPR015712" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRD9" FT /protein_id="CAE30516.1" FT /translation="MQPRVGVLMPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLT FT FLQADTATSDRVNEGLQAAFSSIFPIVSHNGMARLEFVSYALGEPVFDVKECQQRGLTY FT ASPLRAKVRLVLLDREVSKPTIKEVKEQEVYMGEIPLMTGTGSFVINGTERVIVSQLHR FT SPGVFFEHDRGKTHSSGKLLFSARVIPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILL FT KAIGMTPESILAHFFDFDNFELKSEGGMMEFVAERWKGEMARFDIADRDGKVIVEKDKR FT INAKHLRDLAAGGIQRVSVPEDFLYGRVLAKNIVDPDTGEVVAHANDEITESVLNAMRA FT ANVRDIQTLYTNDLDRGPYISQTLRADETADQMAARVAIYRMMRPGEPPTEEAVEALFQ FT RLFYSEETYDLSRVGRMKVNSRLGRGDDSTGPMTLTNEDILETIKVLVELRNGRGQIDD FT IDHLGNRRVRCVGELAENQFRAGLVRVERAVKERLGQAETENLMPHDLINSKPISAAIK FT EFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIE FT TPEGPNIGLINSMALYARLNEYGFLETPYRKIIDGKVSDQIDYLSAIEESHYVIAQANA FT ALDDEGRFVDDLVACREAGETMLTAPGNVHYMDVAPSQIVSVAASLIPFLEHDDANRAL FT MGANMQRQAVPCLRPEKPLVGTGVERTVAVDSGTTVQALRGGVVDHVDADRVVIRVNDE FT ENVAGEVGVDIYNLIKYTRSNQNTNINQRPIVARGDKVAKGDVLADGASTDLGELALGQ FT NMLIAFMPWNGYNFEDSILISERVVADDRYTSIHIEELTVVARDTKLGPEEITRDISNL FT AETQLNRLDDSGIVYIGAEVSADDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDT FT SLRVPSGMTGTVIDVQVFTREGIVRDKRAQSIIDDELRRYRQDLNDQLRIVENDQFDRI FT EKMLVGKAVNGGPRKLAKGATLTKAYLADLDRWQWFDIRLADEQHAVVLEQAKESLEQK FT RHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVKRRLQPGDKMAGRHGNKGVVSRIT FT PVEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHLGWAAKGVGYRIADMLRDERTAQ FT AKSVRGYLEKVYNTTGSSAHIDSLTDEEVLELANNLKKGVPFATPVFDGATEEEIGKML FT ELAYPDDVAARMRLTASRSQAWLYDGRTGEQFERPVTIGYMHYLKLHHLVDDKMHARST FT GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDITGRTKVYEN FT IVKGDHVIDAGMPESFNVLVKEIRSLALDMDLERN" FT misc_feature 11890..15627 FT /note="HMMPfam hit to PF00562, DE RNA polymerase beta FT subunit, score 0" FT misc_feature 14890..14928 FT /note="PS01166 RNA polymerases beta chain signature." FT CDS 15759..20003 FT /transl_table=11 FT /gene="rpoC" FT /gene_synonym="tabB" FT /locus_tag="BB0015" FT /product="DNA-directed RNA polymerase beta' chain" FT /EC_number="2.7.7.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP0016" FT /db_xref="GOA:Q7WRD8" FT /db_xref="InterPro:IPR012754" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRD8" FT /protein_id="CAE30517.1" FT /translation="MKALLDLFKQVSQDEQFDAIKIGIASPEKIRSWSFGEVRKPETIN FT YRTFKPERDGLFCAKIFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVAKVRRERMGH FT IELASPVAHIWFLKSLPSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDD FT DFLAKTEEYGDDFRALMGAEAVRELLRTIDIDREVETLRGELKATSSEAKIKKISKRLK FT VLEGFQKSGIKAEWMVMEVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKR FT LLELKAPEIILRNEKRMLQEAVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQ FT NLLGKRVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFIFNRLEMMGLATTIKAAKK FT LVESQEPVVWDILEEVIREHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFN FT ADFDGDQMAVHVPLSLEAQLEARTLMLASNNVLFPANGEPSIVPSQDIVLGLYYTTRER FT INGKGEGIFFADVSEVQRAYDNGEVELQTRITVRLTEYERDEQGEWQPVKHRHETTVGR FT ALLSEILPKGLPFTVLNKALKKKEISRLINQSFRRCGLRDTVIFADKLMQSGFRLATRG FT GISIAMEDMLIPKAKEGILAEASREVKEIDKQYSSGLVTSQERYNNVVDIWGKAGDKVG FT KAMMEQLATEPVVNRHGEEVRQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGS FT IIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVITED FT DCGTSHGYAMKALVEGGEVIEPLRDRILGRVAAIDVVNPDTQETAIAAGTLLDEDLVDL FT IDRLGVDEVKVRTPLTCETRHGLCAHCYGRDLGRGSHVNVGEAVGVIAAQSIGEPGTQL FT TMRTFHIGGAASRSALASAVETKSNGTVGFASTMRYVTNAKGERVAISRSGELAIFDDN FT GRERERHKIPYGATVLVGDGEAVKAGTRLASWDPLTRPIVSEYSGAVRFENIEEGVTVA FT KQVDEVTGLSTLVVITPKTRGGKIVMRPQIKLVNENGEDVKIAGTDHSVNISFPVGALI FT TVRDGQQVAVGEVLARIPQESQKTRDITGGLPRVAELFEARSPKDAGMLAEVTGTVSFG FT KDTKGKQRLVITDLEGVSHEFLILKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQGI FT EKLATYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVNIVDPGDTEFIPGEQVERSEL FT LNENDRVVAEDKRPASYDNVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDL FT RGLKENVIVGRLIPAGTGLAYHIARKDKEALEAAEREAARQLANPFEDAPVTVGGEPEA FT PAADTPSDDSAE" FT misc_feature 16461..18251 FT /note="HMMPfam hit to PF00623, DE RNA polymerase alpha FT subunit, score 1.4e-274" FT misc_feature 16740..16763 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(20112..20516) FT /transl_table=11 FT /locus_tag="BB0016" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0017" FT /db_xref="UniProtKB/TrEMBL:Q7WRD7" FT /protein_id="CAE30518.1" FT /translation="MPIILRPFLSSLSLAVLALSGCANLSQPAAEAPATPAALQALAEV FT RTEYGAGHYGEVIRRVARSDELAAAPKAVRIEAFKLQAFSYCVSNYTQLCEDAFVRILH FT LDSSFTLAPNEAGHPAWGPVFRAAQSKAGT" FT misc_feature complement(20424..20516) FT /note="Signal peptide predicted for BB0016 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.612 between residues 32 and 33" FT misc_feature complement(20451..20483) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 20757..21989 FT /transl_table=11 FT /locus_tag="BB0017" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0018" FT /db_xref="UniProtKB/TrEMBL:Q7WRD6" FT /protein_id="CAE30519.1" FT /translation="MPLSAASQHPRSPFAGAAPLAHRPLSAIAATAAGGVPQARIKRLL FT GELVPQLASVHEQGHICGDITVDSVGLDESGRAHLLALNGAAQGEAALPAPGYAPFELY FT VEDPAWPRGPWTDIYALSAVAHSLITGRRPPAAPERSVNDGYQPLAQRDLPKYDNDFLR FT AIDAGLAVRPQARPHTLEAFVDSLKFPEPEPPAEAMAPLPSEPPPRDEVRDEEPVRQRP FT AVRSILFAILLALATLGVAVYWWQRLTGTPSGVITSSERVTTPGATATPSDSREAEPPA FT AGAAPPQGGDAGSADTSGAAPPAQAQAGPDAAPAPDVAPEGAATDAQAESEAAATPAPA FT AARVTVRINVQPWGEIWINGVRRGVSPPMKELRLAPGRYSVVVRNADLPPYRATLEVKA FT GQPARITHVFQ" FT misc_feature 21423..21491 FT /note="1 probable transmembrane helix predicted for BB0017 FT by TMHMM2.0 at aa 223-245" FT CDS complement(22005..24350) FT /transl_table=11 FT /locus_tag="BB0018" FT /product="probable two-component sensor protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0019" FT /db_xref="GOA:Q7WRD5" FT /db_xref="InterPro:IPR000700" FT /db_xref="UniProtKB/TrEMBL:Q7WRD5" FT /protein_id="CAE30520.1" FT /translation="MRRRRPLPDSPARRWLAARTGIMLTMVLVTVAGLLGALGGMGRID FT LTLYDRAVSLSGRPASPEILIVMIDDDSIATLGRWPWSRTVHAALLDKLGEARAVGLDI FT IFAEPDRAEPAVDAQLAEAIRRNGKVVLPVVLNRLPRATGHEPPLESLAQAAAALGFIN FT VELDTDGVLRRSIWTAQVGTALWPHFSLSLMSVGGEAQQALQFATAQLAAGQTRIPYAG FT PPGHLRTVSYISVLQGNVPPEWIRGKYVLVGSWATGLTDAFPTPVSHQANGMAGVEIIG FT NMLQAARQNISYTVASPWHNALAAALPVLLLCLGLRVLSPKAALVLNGAILLAVLPATY FT LALRFGQVWFPPTATMLVLALCYPIWSWRSQEAVLRYMDNELKRLQREYPPVLNEGRTH FT TLLVNRSLEDRLGKLREALARVRNLRRFLTDGLDGMPDATLVFDPRGRLQFRNRAAIQY FT FRSLGLRAPRHGQLAADLFQRAITDERNRQTLTEALRHTPPDAQDSPWNVDMEVRDQAG FT RDLILKCAPIRTDEGAFAGTVATLTDITVIRQAERKREETLRFISHDMRAPQNSILALV FT AMNQDSLNGVQQSDALARIAMLANRTLRLVDDFVHLTRAESMKIAPTELDLSELLREAT FT DDFWAPARARGIRIEIAEPLPIALVRGDDTLLQRALSNLLDNAIKFSPSDGRIRCTVVR FT DADDWVASIQDDGPGIAPQDQLQIFQPFTRVNTAGSNEVGGAGLGLAFVRTVAERLGGR FT AEVISPPSGTGPAGSTFVLRLPASPPPG" FT misc_feature complement(22020..22367) FT /note="HMMPfam hit to PF02518, DE Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 6.6e-38" FT misc_feature complement(22497..22694) FT /note="HMMPfam hit to PF00512, DE His Kinase A FT (phosphoacceptor) domain, score 0.0055" FT misc_feature complement(24255..24350) FT /note="Signal peptide predicted for BB0018 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.671) with cleavage site FT probability 0.192 between residues 32 and 33" FT CDS complement(24352..25458) FT /transl_table=11 FT /locus_tag="BB0019" FT /product="putative peptidoglycan binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0020" FT /db_xref="GOA:Q7WRD4" FT /db_xref="InterPro:IPR018392" FT /db_xref="UniProtKB/TrEMBL:Q7WRD4" FT /protein_id="CAE30521.1" FT /translation="MIRPFAPAFMLVCALVASAAVQAQPAGSLGENFLYRVRSGDTLIA FT LASTYTGNESNWSVLQTLNRVDDPQRLPIALELRIPLAMIPVQAAGAEVVHVSGSATAD FT GQALRVGMQIVEGSTIRTASGSFVTLKLSDGSQVTIPENGTVAANRLRQFQRVPLTDSI FT FQVQQGELESRVAPGGQGVGRFEIRTPVAVTGVRGTRFRVKSSPQGASSEVLEGSVRLQ FT PHAPDAAPATPVAVSSGYGANVGSDGAFSGVQALLPAPQLQAPARAASGGWTVPFAPVS FT GASAYIVRVSRDAEGMHVVTSDRFDTNDVRFRAPGAGTYYVAVRAVDASGLNGREAVQP FT FEGANVLSTPYGLSVATGTGDLVLLSEF" FT misc_feature complement(25216..25356) FT /note="HMMPfam hit to PF01476, DE LysM domain, score FT 0.00042" FT misc_feature complement(25390..25458) FT /note="Signal peptide predicted for BB0019 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.967 between residues 23 and 24" FT CDS complement(25476..26210) FT /transl_table=11 FT /locus_tag="BB0020" FT /product="probable two-component response regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0021" FT /db_xref="GOA:Q7WRD3" FT /db_xref="HSSP:1B00" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WRD3" FT /protein_id="CAE30522.1" FT /translation="MSQRMKIASLEDDLDQAQHIQQVLSAAGYTCTSYPRSLDLLAALR FT VQAFDLILLDWQLPDMNGDEVVRRLRTSYGFAVPIIFLTSRDQESDLVQGLQAGADDYI FT VKPMRPAELLARVAALLRRSQGALPDYLPFSVAGYRIDPNERSIALDGQVVPLPPKEFE FT LAQLFFRNIGRLLSRDVLAESVWNREIPATSRTLDTHLSNIRQKLQLRPQNGVRLSSSY FT ALGYRLELVSDPQPQADDAKDD" FT misc_feature complement(25536..25754) FT /note="HMMPfam hit to PF00486, DE Transcriptional FT regulatory protein, C terminal, score 3.8e-10" FT misc_feature complement(25836..26198) FT /note="HMMPfam hit to PF00072, DE Response regulator FT receiver domain, score 3.2e-34" FT CDS 26468..27280 FT /transl_table=11 FT /locus_tag="BB0021" FT /product="Two-component response regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0022" FT /db_xref="GOA:Q7WRD2" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WRD2" FT /protein_id="CAE30523.1" FT /translation="MRNTAPHCLKCVQARAFPFERLKAGREPADWQGFVMKQLSTLIMT FT PDDADRDRIIAAMLLAGISAKGCSTPLELFGLLSEDTYDAVVMDLSELGELGYALVARL FT RGSPELGIIVIGGNLTLDARLRCLQSGADACVPLPADERELACVLLALARRLPAWQEDE FT EAVAQRGTDEGWELRDQDWTLVAPGGEELSLSANERQIVRLLLGAAGRAIGRAELASEL FT AVDGPAVRSTGERSIDVIVSRLRRKAELAGLVLPIRTVYGSGYLFANS" FT misc_feature 26582..26938 FT /note="HMMPfam hit to PF00072, DE Response regulator FT receiver domain, score 0.0016" FT misc_feature 27035..27259 FT /note="HMMPfam hit to PF00486, DE Transcriptional FT regulatory protein, C terminal, score 2.4e-05" FT CDS complement(27310..28245) FT /transl_table=11 FT /locus_tag="BB0022" FT /product="putative metal transporter" FT /db_xref="GOA:Q7WRD1" FT /db_xref="InterPro:IPR002524" FT /db_xref="UniProtKB/TrEMBL:Q7WRD1" FT /protein_id="CAE30524.1" FT /translation="MDSLPPSPPGRHGHSFLGPAHDENAKRTRWVVLLTLAMMVGEIVA FT GYLTGSMALLADGFHMATHAGALGIAAIAYAYAKRNADNRAFSFGTGKVGELAGFASAL FT MLAMVSLAIGVESAIRLVQPTDVAFGEATLIAVVGLGVNLVSALLLGGGHAGHVHAEHH FT HPGHARHPHGHDNNLRSAYVHVLADALTSVLAIVALLAGRYLGWIWLDPVIGMVGAVVI FT ARWAWTLMRDTGAILLDKADRHLEAEVRGAIETAGDATIADLHVWQIGPQAHAAIVSVV FT AARGVTASQIRERVSSIHEVRHLTVELVPA" FT misc_feature complement(27316..28164) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01545, DE Cation efflux family, FT score 5e-54" FT misc_feature complement(join(27565..27633,27646..27705,27784..27852, FT 27889..27957,28015..28074,28093..28161)) FT /note="6 probable transmembrane helices predicted for FT BB0022 by TMHMM2.0 at aa 29-51, 58-77, 97-119, 132-154, FT 181-200 and 205-227" FT CDS complement(28251..28526) FT /transl_table=11 FT /locus_tag="BB0023" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR003735" FT /db_xref="UniProtKB/TrEMBL:Q7WRD0" FT /protein_id="CAE30525.1" FT /translation="MSHLSDHKDELLKRTQRIAGQVQAIQRSLETEADCESILHLVAAT FT RGALNGLLDEILEAHAREHVAHPDLTPDARSKGLEALVSAIRRYSK" FT misc_feature complement(28257..28445) FT /note="HMMPfam hit to PF02583, DE Uncharacterized BCR, FT COG1937, score 4e-07" FT CDS 29040..29480 FT /transl_table=11 FT /gene="rpsL" FT /locus_tag="BB0024" FT /product="30S ribosomal protein S12" FT /note="ortholog of Bordetella pertussis (BX470248) BP3608" FT /db_xref="GOA:Q7WRC9" FT /db_xref="InterPro:IPR005679" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRC9" FT /protein_id="CAE30526.1" FT /translation="MLGGCEYVSTYQWYVKGISKVMPTISQLVRKPREVSIIKSKSPAL FT ENCPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTNGYEVISYIGGEGHNLQEHSVVLVR FT GGRVKDLPGVRYHIVRGSLDLQGVKDRKQARSKYGAKRPKKA" FT misc_feature 29103..29471 FT /note="HMMPfam hit to PF00164, DE Ribosomal protein S12, FT score 3.8e-79" FT misc_feature 29229..29252 FT /note="PS00055 Ribosomal protein S12 signature." FT CDS 29644..30114 FT /transl_table=11 FT /gene="rpsG" FT /locus_tag="BB0025" FT /product="30S ribosomal protein S7" FT /note="ortholog of Bordetella pertussis (BX470248) BP3609" FT /db_xref="GOA:Q7WRC8" FT /db_xref="HSSP:1HUS" FT /db_xref="InterPro:IPR005717" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRC8" FT /protein_id="CAE30527.1" FT /translation="MPRRREVPKREILPDPKFGSVELAKFMNVVMLDGKKAVAERIIYG FT ALEQVQVKTGKDAIEVFNLAINNIKPIVEVKSRRVGGANYQVPVEVRPVRRLALAMRWL FT REAAKKRGEKSMDLRLAGELIDASEGRGAAMKKREDTHKMAEANKAFSHFRW" FT misc_feature 29644..30108 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00177, DE Ribosomal protein FT S7p/S5e, score 2.9e-89" FT misc_feature 29701..29781 FT /note="PS00052 Ribosomal protein S7 signature." FT CDS 30132..32234 FT /transl_table=11 FT /gene="fusA" FT /gene_synonym="fus" FT /gene_synonym="far1" FT /locus_tag="BB0026" FT /product="elongation factor G" FT /note="ortholog of Bordetella pertussis (BX470248) BP3610" FT /db_xref="GOA:Q7WRC7" FT /db_xref="InterPro:IPR005225" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRC7" FT /protein_id="CAE30528.1" FT /translation="MARKTPIERYRNIGISAHIDAGKTTTTERILFYTGVNHKLGETHD FT GSATMDWMEQEQERGITITSAATTAFWRGMAGNYPEHRINIIDTPGHVDFTIEVERSMR FT VLDGACMVYCAVGGVQPQSETVWRQANKYGVPRLAFVNKMDRTGANFFKVYDQLKTRLR FT ANPVPIVIPIGAEDSFTGVVDLVKMKAIIWDEASQGTKFEYGDIPAELEGTANEWREKL FT VEAAAESSEELMNKYLETGSLDEDDINVALRQRTIAGEIQPMLCGTAFKNKGVQRMLDA FT VIDYLPSPADIPPVDGQDDDGNPIKRSADDAEKFSALAFKLMSDPFVGQLTFVRVYSGV FT LKSGDTVYNPIKGKKERIGRLLQMHANNREEIKEVLAGDIAAVVGLKDVTTGETLCDID FT SHILLERMEFPEPVISQAVEPKSKADQEKMGLALSRLAQEDPSFRVRSDEESGQTIISG FT MGELHLEILVDRMRREFGVEANVGKPQVAYRETIRKNCDEVEGKFVKQSGGRGQYGHVV FT LKLEPLPPGGGYEFVDAIKGGVVPREYIPAVDKGIQETLPAGILAGYPVVDVKATLFFG FT SYHDVDSNENAFKMAASMAFKEGMRRASPVLLEPMMAVEVETPEDYAGTVMGDLSSRRG FT MVQGMDDIVGGGKTIKAEVPLAEMFGYATNLRSLTQGRATYTMEFKHYAEAPKNVADEV FT IAARGK" FT misc_feature 30153..31001 FT /note="HMMPfam hit to PF00009, DE Elongation factor Tu GTP FT binding domain, score 4e-107" FT misc_feature 30180..30203 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 30282..30329 FT /note="PS00301 GTP-binding elongation factors signature." FT misc_feature 31080..31319 FT /note="HMMPfam hit to PF03144, DE Elongation factor Tu FT domain 2, score 1e-26" FT misc_feature 31581..31943 FT /note="HMMPfam hit to PF03764, DE Elongation factor G, FT domain IV, score 1.7e-71" FT misc_feature 31947..32213 FT /note="HMMPfam hit to PF00679, DE Elongation factor G FT C-terminus, score 9.1e-49" FT CDS 32311..33501 FT /transl_table=11 FT /gene="tuf" FT /gene_synonym="tufA" FT /gene_synonym="tufB" FT /locus_tag="BB0027" FT /product="elongation factor Tu" FT /note="ortholog of Bordetella pertussis (BX470248) BP3611" FT /db_xref="GOA:Q79G84" FT /db_xref="HSSP:1AIP" FT /db_xref="InterPro:IPR004160" FT /db_xref="UniProtKB/Swiss-Prot:Q79G84" FT /protein_id="CAE30529.1" FT /translation="MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLSNKFGGEAR FT GYDQIDAAPEEKARGITINTSHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAIL FT VVSAADGPMPQTREHILLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSKYDF FT PGDDTPIVKGSAKLALEGDKGELGEQAILSLAQALDTYIPTPERAVDGAFLMPVEDVFS FT ISGRGTVVTGRIERGVVKVGEEIEIVGIKPTVKTTCTGVEMFRKLLDQGQAGDNVGILL FT RGTKREDVERGQVLAKPGSINPHTDFTAEVYILSKEEGGRHTPFFNGYRPQFYFRTTDV FT TGTIDLPADKEMVLPGDNVSMTVKLLAPIAMEEGLRFAIREGGRTVGAGVVAKIIK" FT misc_feature 32338..32928 FT /note="HMMPfam hit to PF00009, DE Elongation factor Tu GTP FT binding domain, score 6.2e-93" FT misc_feature 32365..32388 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 32461..32508 FT /note="PS00301 GTP-binding elongation factors signature." FT misc_feature 32962..33198 FT /note="HMMPfam hit to PF03144, DE Elongation factor Tu FT domain 2, score 5e-29" FT misc_feature 33208..33495 FT /note="HMMPfam hit to PF03143, DE Elongation factor Tu FT C-terminal domain, score 4.5e-60" FT CDS 33565..33876 FT /transl_table=11 FT /gene="rpsJ" FT /gene_synonym="nusE" FT /locus_tag="BB0028" FT /product="30S ribosomal protein S10" FT /note="ortholog of Bordetella pertussis (BX470248) BP3612" FT /db_xref="GOA:Q7WRC6" FT /db_xref="InterPro:IPR018268" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRC6" FT /protein_id="CAE30530.1" FT /translation="MKNQKIRIRLKAFDYKLIDQSAAEIVDTAKRTGAVVRGPVPLPTR FT IRRYDVLRSPHVNKTSRDQFEIRTHQRLMDIVDPTDKTVDALMRLDLPAGVDVEIALQ" FT misc_feature 33577..33864 FT /note="HMMPfam hit to PF00338, DE Ribosomal protein FT S10p/S20e, score 9.3e-57" FT misc_feature 33649..33696 FT /note="PS00361 Ribosomal protein S10 signature." FT CDS 34222..34923 FT /transl_table=11 FT /gene="rplC" FT /locus_tag="BB0029" FT /product="50S ribosomal protein L3" FT /note="ortholog of Bordetella pertussis (BX470248) BP3613" FT /db_xref="GOA:Q7WRC5" FT /db_xref="InterPro:IPR019926" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRC5" FT /protein_id="CAE30531.1" FT /translation="MEKTMSNSTPTPAAHRLGLVGRKVGMTRIFTEDGESIPVTVLDVS FT NNRVTQVKSLESDGYAAIQVTYGTRRATRVVKPQAGHYAKAGAEAGSILKEFRLDPARA FT AEFAAGAVIAVESVFEAGQQVDVTGTSIGKGFAGTIKRHNFGSQRASHGNSRSHRVPGS FT IGQAQDPGRIFPGKRMSGHMGDVTRTVQNLDVVRVDAERGLLMVKGAVPGHAGGDVIVR FT PAVKAPAKKGA" FT misc_feature 34288..34887 FT /note="HMMPfam hit to PF00297, DE Ribosomal protein L3, FT score 2.1e-87" FT misc_feature 34576..34647 FT /note="PS00474 Ribosomal protein L3 signature." FT CDS 34928..35545 FT /transl_table=11 FT /gene="rplD" FT /locus_tag="BB0030" FT /product="50S ribosomal protein L4" FT /note="ortholog of Bordetella pertussis (BX470248) BP3614" FT /db_xref="GOA:Q7WRC4" FT /db_xref="InterPro:IPR013005" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRC4" FT /protein_id="CAE30532.1" FT /translation="MDLKLLNDQGQAATFSAPDTIFGRDFNEALVHQIVVAFQANARSG FT NRAQKDRAEVKHSTKKPWRQKGTGRARAGMTSSPLWRGGGRAFPNSPEENFSQKVNKKM FT YRAGIRSILSQLAREDRVAVVDTFTLESPKTKLAAAKLKSLGLDSVLIITDNVDENVYL FT ATRNLPHVAVVEPRYADPLSLIHYKKVLITKPAIAQLEEMLG" FT misc_feature 34964..35536 FT /note="HMMPfam hit to PF00573, DE Ribosomal protein L4/L1 FT family, score 7.8e-47" FT CDS 35542..35838 FT /transl_table=11 FT /gene="rplW" FT /locus_tag="BB0031" FT /product="50S ribosomal protein L23" FT /note="ortholog of Bordetella pertussis (BX470248) BP3615" FT /db_xref="GOA:Q7WRC3" FT /db_xref="InterPro:IPR013025" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRC3" FT /protein_id="CAE30533.1" FT /translation="MNAERLMQVILAPIVTEKATFVAEKNQQVAFRVVADATKPEIKAA FT VELLFKVQVESVQVLNRKGKVKRFGRFVGRRRNERKAYVALKDGQEIDFAEVK" FT misc_feature 35560..35832 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00276, DE Ribosomal protein L23, FT score 1.2e-25" FT CDS 35839..36666 FT /transl_table=11 FT /gene="rplB" FT /locus_tag="BB0032" FT /product="50S ribosomal protein L2" FT /note="ortholog of Bordetella pertussis (BX470248) BP3616" FT /db_xref="GOA:Q7WRC2" FT /db_xref="InterPro:IPR014722" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRC2" FT /protein_id="CAE30534.1" FT /translation="MALVKVKPTSAGRRGMVKVVSPKLHKGAPHAALLEKKTRGSGRNN FT NGHITVRHRGGGHKQHYRVVDFRRNKDGIPAKVERLEYDPNRTAHIALLCYADGERRYI FT IAPRGLEVGATLISGIEAPIRAGNTLPIRNIPVGTTIHCIEMIPGKGAQMARSAGASAV FT LMAREGTYAQVRLRSGEVRRVHIQCRATIGEVGNEEHSLRQIGKAGAMRWRGVRPTVRG FT VAMNPIDHPHGGGEGRTGEAREPVSPWGTPAKGFKTRRNKRTNNMIVQRRKRK" FT misc_feature 35962..36192 FT /note="HMMPfam hit to PF00181, DE Ribosomal Proteins L2, FT RNA binding domain, score 3.2e-45" FT misc_feature 36208..36594 FT /note="HMMPfam hit to PF03947, DE Ribosomal Proteins L2, FT C-terminal domain, score 3.9e-82" FT misc_feature 36490..36525 FT /note="PS00467 Ribosomal protein L2 signature." FT CDS 36679..36954 FT /transl_table=11 FT /gene="rpsS" FT /locus_tag="BB0033" FT /product="30S ribosomal protein S19" FT /note="ortholog of Bordetella pertussis (BX470248) BP3617" FT /db_xref="GOA:Q7WRC1" FT /db_xref="InterPro:IPR005732" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRC1" FT /protein_id="CAE30535.1" FT /translation="MSRSIKKGPFVDAHLIKKVDAAVAGKDKKPIKTWSRRSTVLPEFI FT GLTIAVHNGRQHVPVYINENMVGHKLGEFALTRTFKGHAADKKSKR" FT misc_feature 36685..36927 FT /note="HMMPfam hit to PF00203, DE Ribosomal protein S19, FT score 1.1e-50" FT misc_feature 36835..36909 FT /note="PS00323 Ribosomal protein S19 signature." FT CDS 36958..37287 FT /transl_table=11 FT /gene="rplV" FT /locus_tag="BB0034" FT /product="50S ribosomal protein L22" FT /note="ortholog of Bordetella pertussis (BX470248) BP3618" FT /db_xref="GOA:Q7WRC0" FT /db_xref="InterPro:IPR005727" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRC0" FT /protein_id="CAE30536.1" FT /translation="METTAIIRGVHISAQKTRLVADLIRGKSVAQALNILTFSPKKAAV FT ILKKAVESAIANAEHNDGADIDELKVTTIFVDKAQSMKRFSARAKGRGNRIEKQTCHIT FT VKVGA" FT misc_feature 36970..37281 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00237, DE Ribosomal protein FT L22p/L17e, score 1.6e-49" FT misc_feature 37018..37041 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 37204..37278 FT /note="PS00464 Ribosomal protein L22 signature." FT CDS 37297..38088 FT /transl_table=11 FT /gene="rpsC" FT /locus_tag="BB0035" FT /product="30S ribosomal protein S3" FT /note="ortholog of Bordetella pertussis (BX470248) BP3619" FT /db_xref="GOA:Q7WRB9" FT /db_xref="InterPro:IPR008282" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRB9" FT /protein_id="CAE30537.1" FT /translation="MGQKIHPTGFRLAVTRNWTSRWFADDKAFGTMLAEDIRVREYLKK FT KLKSASVGRVIIERPAKNARITVYSARPGVVIGKRGEDIENLKADLQRLMGVPVHVNIE FT EIRKPETDAQLIADSISQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIA FT RTEWYREGRVPLHTLKANIDYGTSEAHTTYGVIGIKVWVYKGDMLANGELPPEAATPRE FT EERRPRRAPRGDRPDGARTGRPGGRGRGPRKADAAPAPEGE" FT misc_feature 37297..37482 FT /note="HMMPfam hit to PF00417, DE Ribosomal protein S3, FT N-terminal domain, score 1.8e-25" FT misc_feature 37489..37632 FT /note="HMMPfam hit to PF00013, DE KH domain, score 5.5e-07" FT misc_feature 37651..37902 FT /note="HMMPfam hit to PF00189, DE Ribosomal protein S3, FT C-terminal domain, score 2e-51" FT misc_feature 37783..37887 FT /note="PS00548 Ribosomal protein S3 signature." FT CDS 38091..38507 FT /transl_table=11 FT /gene="rplP" FT /locus_tag="BB0036" FT /product="50S ribosomal protein L16" FT /note="ortholog of Bordetella pertussis (BX470248) BP3620" FT /db_xref="GOA:Q7WRB8" FT /db_xref="InterPro:IPR000114" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRB8" FT /protein_id="CAE30538.1" FT /translation="MLQPSRRKYRKEQKGRNTGLASRGTHVSFGEFGLKATGRGRLTAR FT QIEAARRAINRHIKRGGRIWIRIFPDKPISQKPAEVRMGNGKGNPEYWVAEIQPGKVLY FT EMEGVSEELAREAFRLAAAKLPISTTFVARHIGA" FT misc_feature 38091..38486 FT /note="HMMPfam hit to PF00252, DE Ribosomal protein L16, FT score 7.7e-88" FT misc_feature 38265..38300 FT /note="PS00586 Ribosomal protein L16 signature 1." FT misc_feature 38334..38369 FT /note="PS00701 Ribosomal protein L16 signature 2." FT CDS 38518..38709 FT /transl_table=11 FT /gene="rpmC" FT /locus_tag="BB0037" FT /product="50S ribosomal protein L29" FT /note="ortholog of Bordetella pertussis (BX470248) BP3621" FT /db_xref="GOA:Q7WRB7" FT /db_xref="InterPro:IPR018254" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRB7" FT /protein_id="CAE30539.1" FT /translation="MKASELRSKDAAELGKELESLLKAQFGLRMQKATQQLANTSQLRN FT VRRDIARVRTLLTEKAGK" FT misc_feature 38524..38703 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00831, DE Ribosomal L29 protein, FT score 1.3e-14" FT misc_feature 38632..38676 FT /note="PS00579 Ribosomal protein L29 signature." FT CDS 38711..38992 FT /transl_table=11 FT /gene="rpsQ" FT /locus_tag="BB0038" FT /product="30S ribosomal protein S17" FT /note="ortholog of Bordetella pertussis (BX470248) BP3622" FT /db_xref="GOA:Q7WRB6" FT /db_xref="InterPro:IPR019979" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRB6" FT /protein_id="CAE30540.1" FT /translation="MSETQNTQVAKRQRTLVGKVVSNKMDKTVVVLVERRVKHPIFGKI FT IMRSAKYKAHDESNQYNEGDTVEIAEGRPISRSKAWRVVRLVEAARVI" FT misc_feature 38762..38968 FT /note="HMMPfam hit to PF00366, DE Ribosomal protein S17, FT score 7.3e-32" FT misc_feature 38900..38938 FT /note="PS00056 Ribosomal protein S17 signature." FT CDS complement(39159..40022) FT /transl_table=11 FT /locus_tag="BB0039" FT /product="putative hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3623" FT /db_xref="GOA:Q7WRB5" FT /db_xref="InterPro:IPR000073" FT /db_xref="UniProtKB/TrEMBL:Q7WRB5" FT /protein_id="CAE30541.1" FT /translation="MSCQHLPASHYARCAGRELHYVEWGRRDAPPLVMWHGLARTGRDF FT DDLAQALADRYRIICPDTIGRGLSQWSSRPAQEYCLDFYATLACELLDRLGLSGVRWIG FT TSMGGAIGMHGAATALRGRITHLVLNDIGPTLPAPAIERILAYAGAPPAFDTVGELEAW FT LRSAYRPYGWLSDAQWRRMAETSIRRLPDGRVTTHYDPAIVGQFRHHPTDYERWSEYDS FT LRIPVLLLRGADSDLLLPEVAHAMTQRGPRARRIDFPDCGHAPALNVTAQIEAIADFLA FT APAALA" FT misc_feature complement(39183..39857) FT /note="HMMPfam hit to PF00561, DE alpha/beta hydrolase FT fold, score 2.5e-07" FT CDS complement(40109..41536) FT /transl_table=11 FT /locus_tag="BB0040" FT /product="putative aldehyde dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3624" FT /db_xref="GOA:Q7WRB4" FT /db_xref="HSSP:1A4S" FT /db_xref="InterPro:IPR016162" FT /db_xref="UniProtKB/TrEMBL:Q7WRB4" FT /protein_id="CAE30542.1" FT /translation="MYEQLALYIDGEFLTGDGRRTQDVVNPATLEVLGQLPHASEADLD FT RALAAAQRAFETWKRTSPMERAAILRKVGQLSRDRAQEIGRNMTLDQGKPLAEAVGEVA FT SCSEHADWHAEECRRIYGRVIPPRNPDVRQFVVREPIGVCAAFTPWNFPYNQAIRKIAA FT ALGAGCTVVLKGPEDSPSAVMAIARMFHEAGLPKGCLNIVWGEPAKISDYLIRSPIVRK FT VSFTGSVPVGKQLAALAGAHMKRVTMELGGHSPVLVFDDADVDRAAEMLARFKVRNAGQ FT VCVSPTRFYVQNGAYEQFLARFTEVLKNIKVGDGLEKGTDMGPLAHERRVPAMSTFVDD FT ALKHGGKVVLGGDAPDRKGYFFSPTVVTELPDNAMLMTEEPFGPLAPVVRFTDTDEVLR FT RANSLPFGLSSYVFTNSLKTATKVSNALEAGMVNINHFGSALAETPFGGIKDSGIGSEG FT GLETFDGYLVTKYITHI" FT misc_feature complement(40115..41503) FT /note="HMMPfam hit to PF00171, DE Aldehyde dehydrogenase FT family, score 3.7e-175" FT CDS 42435..42803 FT /transl_table=11 FT /gene="rplN" FT /locus_tag="BB0041" FT /product="50S ribosomal protein L14" FT /note="ortholog of Bordetella pertussis (BX470248) BP3626" FT /db_xref="GOA:Q7WRB3" FT /db_xref="HSSP:1C04" FT /db_xref="InterPro:IPR019972" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRB3" FT /protein_id="CAE30543.1" FT /translation="MIQMQTTLDVADNTGARAVMCIKVLGGSKRRYAGIGDIIKVSVKD FT AAPRGRVKKGEIYNAVVVRTAKGVRRKDGSLIRFGGNAAVLLNAKLEPIGTRIFGPVTR FT ELRTERFMKIVSLAPEVL" FT misc_feature 42435..42797 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00238, DE Ribosomal protein FT L14p/L23e, score 4.9e-72" FT misc_feature 42612..42692 FT /note="PS00049 Ribosomal protein L14 signature." FT CDS 42814..43134 FT /transl_table=11 FT /gene="rplX" FT /locus_tag="BB0042" FT /product="50S ribosomal protein L24" FT /note="ortholog of Bordetella pertussis (BX470248) BP3627" FT /db_xref="GOA:Q7WRB2" FT /db_xref="InterPro:IPR005825" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRB2" FT /protein_id="CAE30544.1" FT /translation="MNNIRKGDEVIVLTGRDKKRRGTVLARVDADHVLVEGVNVVKKHV FT KANPMANNPGGIVEKTMPIHVSNVALFNPATGKGDRVGVQEVDGRKVRVFRSNGAVVGA FT KA" FT misc_feature 42823..42921 FT /note="HMMPfam hit to PF00467, DE KOW motif, score 0.00028" FT CDS 43147..43686 FT /transl_table=11 FT /gene="rplE" FT /locus_tag="BB0043" FT /product="50S ribosomal protein L5" FT /note="ortholog of Bordetella pertussis (BX470248) BP3628" FT /db_xref="GOA:Q7WRB1" FT /db_xref="InterPro:IPR002132" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRB1" FT /protein_id="CAE30545.1" FT /translation="MSRLQEFYKSKVVADLQAKFGYKCVMEVPRITKITLNMGVSEAVA FT DKKVIEHAVSDLTKISGQKPVVTKTRKAIAGFKIRENYPIGCMVTLRGQRMYEFLDRLV FT AVALPRVRDFRGISGRAFDGRGNYNIGVKEQIIFPEIEYDKIDALRGLNISITTTAKTD FT DEAKALLTAFSFPFRN" FT misc_feature 43219..43386 FT /note="HMMPfam hit to PF00281, DE Ribosomal protein L5, FT score 8.5e-25" FT misc_feature 43315..43365 FT /note="PS00358 Ribosomal protein L5 signature." FT misc_feature 43396..43680 FT /note="HMMPfam hit to PF00673, DE ribosomal L5P family FT C-terminus, score 4.2e-51" FT CDS 43699..44004 FT /transl_table=11 FT /gene="rpsN" FT /locus_tag="BB0044" FT /product="30S ribosomal protein S14" FT /note="ortholog of Bordetella pertussis (BX470248) BP3629" FT /db_xref="GOA:Q7WRB0" FT /db_xref="InterPro:IPR018271" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRB0" FT /protein_id="CAE30546.1" FT /translation="MAKLSLINRDIKRAKLADKYAAKRAELKAIIDDQSKTDEERYQAR FT LKLQQLPRNANPTRQRNRCVVTGRPRGVFRKFGLTRHKLREMAMKGEVPGMTKASW" FT misc_feature 43699..43998 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00253, DE Ribosomal protein FT S14p/S29e, score 3.2e-51" FT CDS 44015..44410 FT /transl_table=11 FT /gene="rpsH" FT /locus_tag="BB0045" FT /product="30S ribosomal protein S8" FT /note="ortholog of Bordetella pertussis (BX470248) BP3630" FT /db_xref="GOA:Q7WRA9" FT /db_xref="HSSP:1AN7" FT /db_xref="InterPro:IPR000630" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRA9" FT /protein_id="CAE30547.1" FT /translation="MSMSDPIADMLTRIRNAQQVDKTTVTMPASKLKVAIATVLKDEGY FT IDGYSVKGTQAKPELEITLKYYAGRPVIERIERVSRPGLRIYKGRTSIPQVMNGLGVAI FT VSTSRGVMTDRKARANGVGGEVLCYVA" FT misc_feature 44027..44404 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00410, DE Ribosomal protein S8, FT score 7.9e-63" FT misc_feature 44315..44368 FT /note="PS00053 Ribosomal protein S8 signature." FT misc_feature 44396..44404 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="PS00294 Prenyl group binding site (CAAX box)." FT CDS 44421..44954 FT /transl_table=11 FT /gene="rplF" FT /locus_tag="BB0046" FT /product="50S ribosomal protein L6" FT /note="ortholog of Bordetella pertussis (BX470248) BP3631" FT /db_xref="GOA:Q7WRA8" FT /db_xref="HSSP:1C04" FT /db_xref="InterPro:IPR019906" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRA8" FT /protein_id="CAE30548.1" FT /translation="MSRIAKYPVELPKGVEASIQPDQITVKGPLGTLVQSLTGDVNVAQ FT EDGKLTFVVANDSRHANAMSGTLRALVANMVTGVSKGFERKLNLVGVGYRAQIQGDAVK FT LQLGFSHDVVHQLPAGVKAECPTQTEIVIKGPNKQVVGQVAAEIRKYREPEPYKGKGVR FT YADERVVIKETKKK" FT misc_feature 44451..44666 FT /note="HMMPfam hit to PF00347, DE Ribosomal protein L6, FT score 1.7e-21" FT misc_feature 44688..44915 FT /note="HMMPfam hit to PF00347, DE Ribosomal protein L6, FT score 7.4e-28" FT misc_feature 44880..44906 FT /note="PS00525 Ribosomal protein L6 signature 1." FT CDS 44976..45338 FT /transl_table=11 FT /gene="rplR" FT /locus_tag="BB0047" FT /product="50S ribosomal protein L18" FT /note="ortholog of Bordetella pertussis (BX470248) BP3632" FT /db_xref="GOA:Q7WRA7" FT /db_xref="HSSP:1ILY" FT /db_xref="InterPro:IPR004389" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRA7" FT /protein_id="CAE30549.1" FT /translation="MDKKVSRLRRAVPTRRKIAQLRVHRLSVFRSNLHIYANIISPEGD FT RVLVSASTLEAEVRAQLGGAGKGGNATAAALVGKRVAEKAKAAGIELVAFDRSGFRYHG FT RVKALAEAAREAGLKF" FT misc_feature 44976..45332 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00861, DE Ribosomal L18p/L5e FT family, score 2.7e-39" FT CDS 45354..45878 FT /transl_table=11 FT /gene="rpsE" FT /locus_tag="BB0048" FT /product="30S ribosomal protein S5" FT /note="ortholog of Bordetella pertussis (BX470248) BP3633" FT /db_xref="GOA:Q7WRA6" FT /db_xref="HSSP:1FKA" FT /db_xref="InterPro:IPR018192" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRA6" FT /protein_id="CAE30550.1" FT /translation="MATKVQGKHAAEKENDDGLREKMIAVNRVSKVVKGGRTMSFAALS FT VVGDGDGRIGMGKGKAREVPVSVQKAMEQARRGMFKVALKNGTLHHTVVGKHGASTVLI FT SPAAEGTGVIAGGPMRAIFEVMGVRNVVAKSLGSSNPYNLVRATLNGLRASLTPAEVAA FT KRGKSVEEILG" FT misc_feature 45405..45605 FT /note="HMMPfam hit to PF00333, DE Ribosomal protein S5, FT N-terminal domain, score 1.1e-25" FT misc_feature 45630..45851 FT /note="HMMPfam hit to PF03719, DE Ribosomal protein S5, FT C-terminal domain, score 2.9e-26" FT CDS 45882..46067 FT /transl_table=11 FT /gene="rpmD" FT /locus_tag="BB0049" FT /product="50S ribosomal protein L30" FT /note="ortholog of Bordetella pertussis (BX470248) BP3634" FT /db_xref="GOA:Q7WRA5" FT /db_xref="HSSP:1BXY" FT /db_xref="InterPro:IPR000517" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRA5" FT /protein_id="CAE30551.1" FT /translation="MAQKQIKVTLVRSVIGTKQSHRDTIRGLGLRRINSSRVLVDTPEV FT RGMIHKVGYLVSVSEA" FT misc_feature 45891..46049 FT /note="HMMPfam hit to PF00327, DE Ribosomal protein FT L30p/L7e, score 3.1e-15" FT CDS 46077..46517 FT /transl_table=11 FT /gene="rplO" FT /locus_tag="BB0050" FT /product="50S ribosomal protein L15" FT /note="ortholog of Bordetella pertussis (BX470248) BP3635" FT /db_xref="GOA:Q7WRA4" FT /db_xref="InterPro:IPR005749" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRA4" FT /protein_id="CAE30552.1" FT /translation="MSDIQLNTLKPAEGSKHAKRRVGRGIGSGLGKTAGRGHKGQKSRS FT GGFHKVGFEGGQMPLQRRLPKRGFTPLGQHLYAEVRLSELQLMEAEEIDVQALKAAGVV FT GQSVRYAKVIKSGELSRKVVLRGITATAGARAAIEAAGGSLA" FT misc_feature 46086..46388 FT /note="HMMPfam hit to PF01305, DE Ribosomal protein L15 FT amino terminal region, score 1.5e-48" FT misc_feature 46410..46505 FT /note="HMMPfam hit to PF00256, DE Ribosomal protein L15, FT score 1e-05" FT CDS 46532..47857 FT /transl_table=11 FT /gene="secY" FT /gene_synonym="prlA" FT /locus_tag="BB0051" FT /product="preprotein translocase SecY subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP3636" FT /db_xref="GOA:Q7WRA3" FT /db_xref="InterPro:IPR002208" FT /db_xref="UniProtKB/TrEMBL:Q7WRA3" FT /protein_id="CAE30553.1" FT /translation="MAKAQALGKTGARYGDLKRRLVFLVLALVVYRLGTHIPVPGINPD FT ALADLFRQHEGGILGLFNMFSGGALSRFSIFALGIMPYISASIIMQLMSVVVPSLEALK FT KEGEAGRRKITQYTRYGTVVLALVQAVGISVALESQPGLVIDPGMLFRFTTVVTLVTGT FT MFVMWLGEQITERGLGNGISILIFAGIVAGLPSALAGLLDLVRTNSMSVLSALFIVALV FT VLVTAFVVFVERGQRKITVNYAKRQVGNKVYGGQSSHLPLKLNMAGVIPPIFASSIILF FT PATITSWFSSGERMAWLRDLAAALEPRQPLYITLYSVAIIFFCFFYTALVFNSRETADN FT LKKSGAFVPGIRPGEQTARYIDKILMRLTLAGAIYITLVCLLPEFLVMRWNVPFYFGGT FT SLLIIVVVTMDFMAQVQAYMMSHQYDSLLKKANFKGSGLPMR" FT misc_feature join(46592..46660,46754..46822,46880..46948,46976..47044, FT 47063..47131,47159..47227,47336..47404,47462..47530, FT 47621..47689,47702..47770) FT /note="10 probable transmembrane helices predicted for FT BB0051 by TMHMM2.0 at aa 21-43, 75-97, 117-139, 149-171, FT 178-200, 210-232, 269-291, 311-333, 364-386 and 391-413" FT misc_feature 46751..46810 FT /note="PS00755 Protein secY signature 1." FT misc_feature 46751..47773 FT /note="HMMPfam hit to PF00344, DE eubacterial secY protein, FT score 1.4e-179" FT misc_feature 47033..47089 FT /note="PS00756 Protein secY signature 2." FT misc_feature 47057..47113 FT /note="PS00095 C-5 cytosine-specific DNA methylases FT C-terminal signature." FT CDS 47867..48085 FT /transl_table=11 FT /gene="infA" FT /locus_tag="BB0052" FT /product="translation initiation factor IF-1" FT /note="ortholog of Bordetella pertussis (BX470248) BP3637" FT /db_xref="GOA:Q7WRA2" FT /db_xref="InterPro:IPR004368" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRA2" FT /protein_id="CAE30554.1" FT /translation="MSKDDVIQMQGEVLENLPNATFRVKLENGHVVLGHISGKMRMHYI FT RILPGDKVTVELTPYDLTRARIVFRSK" FT misc_feature 47870..48079 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00575, DE S1 RNA binding domain, FT score 3.4e-07" FT misc_feature 48041..48070 FT /note="PS00215 Mitochondrial energy transfer proteins FT signature." FT CDS 48120..48233 FT /transl_table=11 FT /gene="rpmJ" FT /locus_tag="BB0053" FT /product="50S ribosomal protein l36" FT /note="ortholog of Bordetella pertussis (BX470248) BP3638" FT /db_xref="GOA:Q7WRA1" FT /db_xref="HSSP:1DFE" FT /db_xref="InterPro:IPR000473" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRA1" FT /protein_id="CAE30555.1" FT /translation="MKVMASVKRICRNCKVIKRHGVVRVICTDPRHKQRQG" FT misc_feature 48120..48227 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00444, DE Ribosomal protein L36, FT score 8.7e-16" FT misc_feature 48150..48227 FT /note="PS00828 Ribosomal protein L36 signature." FT CDS 48275..48640 FT /transl_table=11 FT /gene="rpsM" FT /locus_tag="BB0054" FT /product="30S ribosomal protein S13" FT /note="ortholog of Bordetella pertussis (BX470248) BP3639" FT /db_xref="GOA:Q7WRA0" FT /db_xref="InterPro:IPR018269" FT /db_xref="UniProtKB/Swiss-Prot:Q7WRA0" FT /protein_id="CAE30556.1" FT /translation="MARIAGINIPPQQHAEIGLTAIFGIGRTRARKICEAAGVPVTKKV FT KDLTDAELERIREHIGVFAVEGDLRREVQLSIKRLIDLGTYRGMRHKRGLPVRGQRTRT FT NARTRKGPRRAAASLKK" FT misc_feature 48281..48598 FT /note="HMMPfam hit to PF00416, DE Ribosomal protein FT S13/S18, score 2.4e-50" FT misc_feature 48533..48574 FT /note="PS00646 Ribosomal protein S13 signature." FT CDS 48656..49057 FT /transl_table=11 FT /gene="rpsK" FT /locus_tag="BB0055" FT /product="30S ribosomal protein S11" FT /note="ortholog of Bordetella pertussis (BX470248) BP3640" FT /db_xref="GOA:Q7WR99" FT /db_xref="InterPro:IPR018102" FT /db_xref="UniProtKB/Swiss-Prot:Q7WR99" FT /protein_id="CAE30557.1" FT /translation="MAKASTSGASRVRKKVKKNVSDGIAHVHASFNNTIITITDRQGNA FT LSWATSGGAGFKGSRKSTPFAAQVAAETAGRVAMEYGIKTLEVRIKGPGPGRESSVRAL FT NALGIKISSIADITPVPHNGCRPPKRRRI" FT misc_feature 48722..49051 FT /note="HMMPfam hit to PF00411, DE Ribosomal protein S11, FT score 9.4e-68" FT misc_feature 48956..49024 FT /note="PS00054 Ribosomal protein S11 signature." FT CDS 49069..49692 FT /transl_table=11 FT /gene="rpsD" FT /gene_synonym="ramA" FT /locus_tag="BB0056" FT /product="30S ribosomal protein S4" FT /note="ortholog of Bordetella pertussis (BX470248) BP3641" FT /db_xref="GOA:P0A4C6" FT /db_xref="InterPro:IPR002942" FT /db_xref="UniProtKB/Swiss-Prot:P0A4C6" FT /protein_id="CAE30558.1" FT /translation="MARYIGPKCKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTS FT GARTSDYGLQLREKQKLKRMYGVLEKQFRKYFVEAERRRGNTGETLIQLLESRLDNVVY FT RMGFGSTRAEARQLVSHRAIELNGHTADIASMLVKAGDVISIREKAKKQGRIRESLDLA FT ASIGLPQWVEVDASKMTGTFKSAPDRADVARDVNESMVVELYSR" FT misc_feature 49069..49356 FT /note="HMMPfam hit to PF00163, DE Ribosomal protein S4/S9 FT N-terminal domain, score 5.2e-33" FT misc_feature 49351..49425 FT /note="PS00632 Ribosomal protein S4 signature." FT misc_feature 49357..49500 FT /note="HMMPfam hit to PF01479, DE S4 domain, score 4.2e-18" FT CDS 49907..50893 FT /transl_table=11 FT /gene="rpoA" FT /locus_tag="BB0057" FT /product="DNA-directed RNA polymerase alpha chain" FT /EC_number="2.7.7.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP3642" FT /db_xref="GOA:P0A4E6" FT /db_xref="HSSP:1LB2" FT /db_xref="InterPro:IPR011773" FT /db_xref="UniProtKB/Swiss-Prot:P0A4E6" FT /protein_id="CAE30559.1" FT /translation="MSTQGFLKPRSIEVEPVGAHHAKIVMEPFERGYGHTLGNALRRIL FT LSSMTGYAPTEVQMTGVVHEYSTIAGVREDVVDILLNLKGVVFKLHNRDEVTLVLRKNG FT AGAVVASDIELPHDVEIINPDHLICNLTDAGKIEMQVKVEKGRGYVPGNVRALSEDRTH FT TIGRIVLDASFSPVRRVSYAVESARVEQRTDLDKLVLDIETNGVISPEEAVRQAARILM FT DQISVFAALEGAGDAYEPPVRGTPQIDPVLLRPVDDLELTVRSANCLKAENIYYIGDLI FT QRTENELLKTPNLGRKSLNEIKEVLAARGLTLGMKLENWPPLGLERP" FT misc_feature 49967..50581 FT /note="HMMPfam hit to PF01000, DE Bacterial RNA polymerase, FT alpha chain, N terminal domain, score 6.5e-104" FT misc_feature 50627..50830 FT /note="HMMPfam hit to PF03118, DE Bacterial RNA polymerase, FT alpha chain C terminal domain, score 1.9e-26" FT CDS 51052..51447 FT /transl_table=11 FT /locus_tag="BB0058" FT /product="50S ribosomal protein L17" FT /note="ortholog of Bordetella pertussis (BX470248) BP3643" FT /db_xref="GOA:Q7WR98" FT /db_xref="HSSP:1GD8" FT /db_xref="InterPro:IPR000456" FT /db_xref="UniProtKB/Swiss-Prot:Q7WR98" FT /protein_id="CAE30560.1" FT /translation="MRHGNGLRKLNRTSSHRLAMFRNMAVSLITHEAIKTTLPKAKELR FT RVIEPLITLGKEPTLANKRLAFARLRDRDAVVKLFAEIGPRYANRNGGYTRVLKMGFRQ FT GDNAPMAFMELVDRPEVDASEADSDAE" FT misc_feature 51109..51399 FT /note="HMMPfam hit to PF01196, DE Ribosomal protein L17, FT score 4.3e-57" FT misc_feature 51151..51219 FT /note="PS01167 Ribosomal protein L17 signature." FT CDS complement(51576..52013) FT /transl_table=11 FT /locus_tag="BB0059" FT /product="histidine triad protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3644" FT /db_xref="GOA:Q7WR97" FT /db_xref="HSSP:1AV5" FT /db_xref="InterPro:IPR011151" FT /db_xref="UniProtKB/TrEMBL:Q7WR97" FT /protein_id="CAE30561.1" FT /translation="MSHDCLFCRISREEIPAHVIHQDSRLLAFLDIHPVRPGHVLIIPR FT QHYPYFEDMPADLAGHILNLGQRLARHMKRLYSVERVGFAFTGIHVAHAHAHLIPMHHP FT QDVTSTQYIEQKDLTFVMPPQSPPEQLASVAQDLRAALTKA" FT misc_feature complement(51690..52010) FT /note="HMMPfam hit to PF01230, DE HIT family, score FT 2.5e-13" FT CDS 52120..52461 FT /transl_table=11 FT /gene="cutA" FT /gene_synonym="cycY" FT /gene_synonym="cutA1" FT /locus_tag="BB0060" FT /product="putative periplasmic divalent cation tolerance FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3645" FT /db_xref="GOA:Q7WR96" FT /db_xref="HSSP:1NAQ" FT /db_xref="InterPro:IPR004323" FT /db_xref="UniProtKB/TrEMBL:Q7WR96" FT /protein_id="CAE30562.1" FT /translation="MLRDDDVVLVISNAPDMLLAKRMAHVLVEDGLAACVNLGAPVLSV FT YRWKGEVEGADEIPLWIKTTYARHQAVVQTLAQLHPYEVPEIIVLPVIGGIASYLDWVR FT EQSSGVDSQ" FT misc_feature 52138..52443 FT /note="HMMPfam hit to PF03091, DE CutA1 divalent ion FT tolerance protein, score 1e-26" FT CDS 52472..54409 FT /transl_table=11 FT /locus_tag="BB0061" FT /product="thiol:disulfide interchange protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3646" FT /db_xref="GOA:Q7WR95" FT /db_xref="HSSP:1JPE" FT /db_xref="InterPro:IPR013766" FT /db_xref="UniProtKB/TrEMBL:Q7WR95" FT /protein_id="CAE30563.1" FT /translation="MMQYGHASATGHGASATGRAAAAGRWLAWMLALALVLFARPAAAL FT TEDDFLPPEQAFVFSAAMADPATLVLNYRIAPEYYMYRERFGLSASPAQAVTLGEAAYP FT QGKVKYDPTFDKDMEVFYGTVAVRVPLSQGNGQPFTLTVTSQGCADAGLCYPPMDNTVQ FT LMPVAGGYALAAGTASAPQGGGTFDSLLEAGDTRLADFIGGGGWLKTAGVFLLLGMLLA FT FTPCVLPMVPILSSIVLGGAQAQRPSRWRGLGLAAAYVFGMSVVYTALGVAAGLSGAGL FT AAWLQTPWILSLFAILLAVLALAMFGAFTFQMPAGLQARLSERSNRIPGGRVTGALVMG FT ALSALIVGPCVAAPLAGALLYISQTGDVILGGAALFAMAWGMGIPLLLVGASAGTLLPR FT TGPWMESVKRVFGMLLLGTAWWMLIPVVPTWVQMLGWSFLAVVGAVMLRAFDALPAGSG FT APRMFAKGLGLLLALAGAAWLIGALSGGRDVLAPLSHLAARAPAGGAVAAAGPAAVDKT FT RFVRVRSNAELDALLARSTQPVMLDFYADWCVSCREMEHFTFSDPTVAARMSQMLLVQA FT DVTKNNADDRALLKRFRLFGPPGIMFFEPGGKLIEDIRVVGFQDARRFAGVLEQVADRS FT GAPGPAQAGS" FT misc_feature join(52532..52600,53120..53188,53225..53293,53336..53404, FT 53477..53545,53573..53641,53699..53758,53768..53821, FT 53858..53926) FT /note="9 probable transmembrane helices predicted for FT BB0061 by TMHMM2.0 at aa 21-43, 217-239, 252-274, 289-311, FT 336-358, 368-390, 410-429, 433-450 and 463-485" FT misc_feature 53111..53743 FT /note="HMMPfam hit to PF02683, DE Cytochrome C biogenesis FT protein transmembrane region, score 2.9e-06" FT misc_feature 54089..54145 FT /note="PS00194 Thioredoxin family active site." FT CDS 54450..55487 FT /transl_table=11 FT /locus_tag="BB0062" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3647" FT /db_xref="GOA:Q7WR94" FT /db_xref="InterPro:IPR000620" FT /db_xref="UniProtKB/TrEMBL:Q7WR94" FT /protein_id="CAE30564.1" FT /translation="MGERLVRCCPYQPRRRDPVASHPSSHYVSTAIASPANVGRVYLQL FT LLVMAAWGVNLVAVKYLTFHMDVQVVAAVRIVVAFVAVSAILLWRLHGVPRLSLRQFGW FT LACAGLLVVYAHQILLVNALRLTPAANATLIMATSPLFSVVLAAFFYRERLTASRIGGA FT ALGLGGVALVVAGGDGVLASVGRGDVLALCAVIVFVIGGLIIQRVSRALDPLTILWYMY FT LVGAVTLSAHAAFSPATYLASSWTLEPWPWLVVLFSSVIASGVSNLLWNAGIARLGMSR FT AAMFVNWLPIFGLLAAAVFLGERITALHFAGLACVLSGTWLGLRTAPAPAAGQADARPA FT RARRA" FT misc_feature join(54570..54638,54651..54719,54753..54821,54834..54902, FT 54927..54995,55008..55076,55095..55154,55197..55265, FT 55299..55352,55362..55421) FT /note="10 probable transmembrane helices predicted for FT BB0062 by TMHMM2.0 at aa 41-63, 68-90, 102-124, 129-151, FT 160-182, 187-209, 216-235, 250-272, 284-301 and 305-324" FT misc_feature 54597..54974 FT /note="HMMPfam hit to PF00892, DE Integral membrane protein FT DUF6, score 8.9e-21" FT misc_feature 55035..55424 FT /note="HMMPfam hit to PF00892, DE Integral membrane protein FT DUF6, score 6.4e-19" FT misc_feature 55362..55394 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(55484..56500) FT /transl_table=11 FT /gene="hemB" FT /locus_tag="BB0063" FT /product="putative delta-aminolevulinic acid dehydratase" FT /EC_number="4.2.1.24" FT /note="ortholog of Bordetella pertussis (BX470248) BP3648" FT /db_xref="GOA:Q7WR93" FT /db_xref="HSSP:1B4K" FT /db_xref="InterPro:IPR013785" FT /db_xref="UniProtKB/TrEMBL:Q7WR93" FT /protein_id="CAE30565.1" FT /translation="MKPQIISAAFPVSRPRRLRRDDFTRRLVRENTLTANDLIYPVFVT FT EGKGIQQAVPSLPGVVRYSLDTLLPVAEQCVKLGIPVLSLFPAIEPALKTPDGIEAANP FT EGLIPRVVGELKKRFPELGVLTDVALDPYTSHGQDGVIDPAGYVLNEPTVEILIKQALV FT QAAAGVDIVAPSDMMDGRIGAIRQALEDQQHIHTRIMAYSAKYASAFYGPFRDAVGSAS FT NLGKSDKMAYQMDPGNIDEALREVAADLQEGADMVMVKPGMPYLDVVRRVKDAFRVPTF FT AYQVSGEYAMIKAAAANGWLDHDKVMMEALLGFKRAGADGVLTYFALEAATLLQQQR" FT misc_feature complement(55496..56488) FT /note="HMMPfam hit to PF00490, DE Delta-aminolevulinic acid FT dehydratase, score 7.5e-194" FT misc_feature complement(55706..55744) FT /note="PS00169 Delta-aminolevulinic acid dehydratase active FT site." FT CDS complement(56497..57120) FT /transl_table=11 FT /locus_tag="BB0064" FT /product="putative GTP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3649" FT /db_xref="GOA:Q7WR92" FT /db_xref="InterPro:IPR002917" FT /db_xref="UniProtKB/Swiss-Prot:Q7WR92" FT /protein_id="CAE30566.1" FT /translation="MSLLHRASFYISAARLDQLPPAGAPEVCFVGRSNAGKSSAINVLC FT NQRRLAFSSKTPGRTRLINMFGLPDPLAPGEQLGFLVDLPGYGYASVAHREKEKWADIL FT GGYLRDRASLAGIVLLIDIRRGVTDLDRRLTNFIAPTGRPVLALLTKADKLPYGQRMRT FT VFAVRKDLADIGALHMVPFSSTERIGLEEAGAHIENWISPKVVP" FT misc_feature complement(57007..57030) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 57344..58045 FT /transl_table=11 FT /locus_tag="BB0065" FT /product="putative cytochrome C precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP3650" FT /db_xref="GOA:Q7WR91" FT /db_xref="HSSP:1CNO" FT /db_xref="InterPro:IPR009056" FT /db_xref="UniProtKB/TrEMBL:Q7WR91" FT /protein_id="CAE30567.1" FT /translation="MKRVLSRMLVASGLVLGASVHSMSFAADGAAGPAKPDAAKGAQLY FT DQGDASRGVIACASCHGAAGSSTIPANPNLAAQPHEYLVKQLTEFKVKEGEKLPLRMGP FT GGNPTPMTAMAQPLTAQDMQNVALYLSQQPLKEPATAGHENLVELGQKIWRGGLADRNV FT PACAACHGATGAGIPGQYPRLSGQFSSYIEEQLKLFRSGERGNSVPMHDIADRMSDADI FT KAVADYAAGLR" FT misc_feature 57344..57421 FT /note="Signal peptide predicted for BB0065 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.914 between residues 26 and 27" FT misc_feature 57449..57745 FT /note="HMMPfam hit to PF00034, DE Cytochrome c, score FT 2.3e-06" FT misc_feature 57512..57529 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature 57809..58039 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00034, DE Cytochrome c, score 0.18" FT misc_feature 57839..57856 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT CDS 58164..60260 FT /transl_table=11 FT /locus_tag="BB0066" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3651" FT /db_xref="InterPro:IPR007816" FT /db_xref="UniProtKB/TrEMBL:Q7WR90" FT /protein_id="CAE30568.1" FT /translation="MNATSTAPSSRHTLRSLAGDVFELLGSMRFAVSLLMFICIASIVG FT TVLAQNRPSNVYVDQFGPFWFEVFDKFSIWHVYNSWWFLLIMTFLVVSTSVCLIRNTPK FT MLREARSFREHVRASSLRAFPHRVQTEVAQPVSETAQGVTGLLGQFGYAVRERRDGDGI FT MLAAKKGSANRLGYIFAHSAMVIICIGGLLDSEAPVRLQVLFDGKQPIAINGEMARADI FT PDSALLSVNNPSYRANLWVPEGSNASLATIAVNDRSLVQPLPFSLRLKKFTVDYYSTGM FT PSRFLSLVEVTDPETGEMFDQTIEVNEPLRYKGVTVYQSSFDDGGSSVSLTGYPLVGAG FT DTPFKVDGVVGQTSEIGARIGDQPKSMKIEFTALRVINVEDFSGGQPGAQNLSLREHVA FT SVAGSAAGKKNENLRNVGPRIDYKLIDDAGQAHEFQNYMLPVVLDGVPVFLSAVRNNPA FT DDFQYLRIPADDQGSLAEFMRLRAALADPAARQEAARRFAERNAPSGTDRQPLETAAQR FT ALATFAEGGLQAIADFLQANTAPDDLERAAGIVVRLVGASVAELRDIARARAGLPALPQ FT SGPQADEAAQWSRVAVAALSDLAFYPAPVMFSLTDFQERQGSVFQVARTPGKNAVYLGC FT VLLILGIFAMFYIRDRRVWVWVKPAADGAGSSIEAAMTSQKRTLDFNQEFDRLREALLR FT QSKP" FT misc_feature join(58251..58310,58392..58460,58686..58742,60051..60107) FT /note="4 probable transmembrane helices predicted for FT BB0066 by TMHMM2.0 at aa 30-49, 77-99, 175-193 and 630-648" FT CDS 60270..61604 FT /transl_table=11 FT /locus_tag="BB0067" FT /product="putative cytochrome c asssembly protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3652" FT /db_xref="GOA:Q7WR89" FT /db_xref="InterPro:IPR017562" FT /db_xref="UniProtKB/TrEMBL:Q7WR89" FT /protein_id="CAE30569.1" FT /translation="MSTTTSNSAAAWTSGFSPTGDGRAQRGRPDWTDIAFFLLLAAGAG FT FALTRFSGAMDYYEKLILCGTVPALAWLGWLWRPLRHLMIACALAAGLALLLYQNDLAR FT AEQVFFLKYLLSSQSAILWMSALFVLAMLCYWIGILSPTAAWLGTALTWGAVFAGTTGL FT LVRWREGHLMGPDLGHIPVSNLYEVFVLFALITALFYLYYERKYATRALGGFVLLVITS FT ATIFLLWYSFTRDAGQIQPLVPALKSWWMKLHVPANFIGYGTFSLAAMVGFAYLVKQHG FT QTTSWLKLAPLFVLGVALCVEPIVFRTEGLSATWMIYCGAGVVIVGGILLARARIAQAL FT PSLEVLDDIMYRAIAIGFAFFTVATVLGALWAADAWGAYWQWDPKETWALIVWLNYAAW FT LHMRLIKGLRGTMAAYWSLVGLLITGFAFLGVNMFLSGLHSYGEL" FT misc_feature join(60369..60428,60438..60497,60516..60569,60627..60686, FT 60705..60764,60807..60875,60900..60968,61032..61100, FT 61119..61187,61200..61268,61329..61388,61431..61484, FT 61503..61571) FT /note="13 probable transmembrane helices predicted for FT BB0067 by TMHMM2.0 at aa 34-53, 57-76, 83-100, 120-139, FT 146-165, 180-202, 211-233, 255-277, 284-306, 311-333, FT 354-373, 388-405 and 412-434" FT misc_feature 60849..61526 FT /note="HMMPfam hit to PF01578, DE Cytochrome C assembly FT protein, score 8.1e-13" FT CDS complement(61675..62964) FT /transl_table=11 FT /gene="lysA" FT /locus_tag="BB0068" FT /product="diaminopimelate decarboxylase" FT /EC_number="4.1.1.20" FT /note="ortholog of Bordetella pertussis (BX470248) BP3653" FT /db_xref="GOA:Q7WR88" FT /db_xref="HSSP:1HKV" FT /db_xref="InterPro:IPR002986" FT /db_xref="UniProtKB/TrEMBL:Q7WR88" FT /protein_id="CAE30570.1" FT /translation="MTAVSVQPDLAGSPHFRYQNGVLHAEDVPLDSLAAQLGTPLYVYS FT RAALRSAWETYRDAIGERPVLVCFGMKANSNLAVLKEFARLGAGFDIVSGGELARVLAV FT GGDPAKVVFSGVGKQAWEMRAALEADVKCFNVESEAELERLSDVAVSMGRRARVSLRVN FT PDVDAQTHPYISTGLKENKFGIAIESAPAAYRLAARLPGVEVVGVDCHIGSQLTDISPY FT FDALEKLLDLIEQLAENGIAIKHLDLGGGLGIRYTDEIPPSPKALLDRVFERINARGLG FT HLHIVLEPGRSLVGNAGVLLTTVQYLKHAEARNFAIVDAAMNDLLRPALYEAYHGVQPV FT TPRADKRIEYDVVGPVCESADWLARGRALAIQAGDVLAVESAGAYSMVMASNYNTRVRA FT AEVMVDGNRHYIVRQRETLESLYQGESTLP" FT misc_feature complement(61750..62070) FT /note="HMMPfam hit to PF00278, DE Pyridoxal-dependent FT decarboxylase, C-terminal sheet domain, score 2.3e-38" FT misc_feature complement(62077..62832) FT /note="HMMPfam hit to PF02784, DE Pyridoxal-dependent FT decarboxylase, pyridoxal binding domain, score 6e-93" FT misc_feature complement(62206..62247) FT /note="PS00879 Orn/DAP/Arg decarboxylases family 2 FT signature 2." FT CDS 63178..63507 FT /transl_table=11 FT /gene="cyaY" FT /locus_tag="BB0069" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3654" FT /db_xref="InterPro:IPR002908" FT /db_xref="UniProtKB/Swiss-Prot:Q7WR87" FT /protein_id="CAE30571.1" FT /translation="MTETEFLALVDQVLDSIESQADDWAAGLDVDIEATRSGNVLTLVF FT EDGTQVVVNAQAAMQELWVAARSGGFHYRYDGQHWNDTRGGPRLPDALSQICSEAAGVP FT VSVRL" FT misc_feature 63178..63501 FT /note="HMMPfam hit to PF01491, DE Frataxin-like domain, FT score 2.3e-25" FT CDS complement(63564..66008) FT /transl_table=11 FT /locus_tag="BB0070" FT /product="penicillin-binding protein 1A" FT /EC_number="2.4.2.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3655" FT /db_xref="GOA:Q7WR86" FT /db_xref="InterPro:IPR001460" FT /db_xref="UniProtKB/TrEMBL:Q7WR86" FT /protein_id="CAE30572.1" FT /translation="MSKRQNSTKQDKPAKSGSAILRFFLKAGIFFGGLALCGVLLAGMA FT LALAWPNLPDLHAMTDYRPRVPLRVYTADRVLIGEFGEERRNVLRFNEIPDVMKSAVLA FT AEDDRFYQHGGIDWMGVIRAGLTNLISMSKSQGASTITMQVARNFYLSSEKTYSRKFYE FT LLLTFKIESQLTKDQILELYMNQIYLGHRAYGFAAASRTYFGKPLSQVTPSEAAMLAGI FT PKAPSRFNPISNRPRAELRQRYVLGRMYSLGYLTEPEYKEAMAQPIVIKSAEGTPAGGY FT AIHGEYVAELARQLLYNVYQDNLYSRGINIYTTVQSKDQESAYRAVRDGVLEYTRRAPY FT PGPEEQLDMPAGVENDPQALDEFLDGVFDKFSDSGDLLTAVVLSASPTEIKLVRSSREV FT ISITDKKALGVVARALTDKAKPEMRLKRGSVVYIHKYNDNWEVINMPAVQAAFVALSPQ FT DGAIRAMVGGFDFYRGNFNRVTQAWRQPGSNIKPFIYAASLERGLTPATQISDQPFELS FT AAQTGSKAWHPKNYGNQYEPMLTMRQGLYKSKNMVSIRILQAIGPQYAQDYLTRFGFDK FT ARQPAVLPLALGAGSVTPLQLAGAYAVFANGGYRITPYLIDRVTDSSGKVLMQSRPVIA FT GDAAARAIDARTAFVMDDMLRGVATSGTAARARATLKRSDVAGKTGTTNESVDAWFSGY FT TPSLVATAWLGFDQPKSLGSRETGGGVAMPIWLDYMKDALKGVPEEKQRPRPDGLLVEN FT GELYFSEFPPGQAVARLGLPQAGDALGDFLNGLTGGNDNSIRVAPGVGTQGSQPWSQNI FT PF" FT misc_feature complement(63825..64796) FT /note="HMMPfam hit to PF00905, DE Penicillin binding FT protein transpeptidase domain, score 1.6e-28" FT misc_feature complement(63933..63998) FT /note="Predicted helix-turn-helix motif with score FT 1172.000, SD 3.18 at aa 671-692, sequence FT LKRSDVAGKTGTTNESVDAWFS" FT misc_feature complement(65301..65807) FT /note="HMMPfam hit to PF00912, DE Transglycosylase, score FT 5e-89" FT misc_feature complement(65868..66008) FT /note="Signal peptide predicted for BB0070 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.685 between residues 47 and 48" FT CDS 66122..66757 FT /transl_table=11 FT /gene="aroK" FT /locus_tag="BB0071" FT /product="shikimate kinase I" FT /EC_number="2.7.1.71" FT /note="ortholog of Bordetella pertussis (BX470248) BP3656" FT /db_xref="GOA:Q7WR85" FT /db_xref="HSSP:1KAG" FT /db_xref="InterPro:IPR000623" FT /db_xref="UniProtKB/Swiss-Prot:Q7WR85" FT /protein_id="CAE30573.1" FT /translation="MNASANLCAASDNDPQPGDQEAAHPVACAGDEPAAFLPHDLPIFL FT VGMMGAGKTTIGRGLARALRREFIDLDHELEARCGVRVPVIFEIEGEAGFRRREAAALQ FT ECTQRRQIILATGGGAVLAAENRQALRERGIVIYLRASVEELFRRTSRDRNRPLLATAD FT PRATLRELMVAREPLYNEVADLVIDTGSMPIATLVKSLLPKLQAYEKK" FT misc_feature 66242..66739 FT /note="HMMPfam hit to PF01202, DE Shikimate kinase, score FT 1.1e-59" FT misc_feature 66260..66283 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 66407..66484 FT /note="PS01128 Shikimate kinase signature." FT CDS 66757..67833 FT /transl_table=11 FT /gene="aroB" FT /locus_tag="BB0072" FT /product="3-dehydroquinate synthase" FT /EC_number="4.2.3.4" FT /note="ortholog of Bordetella pertussis (BX470248) BP3657" FT /db_xref="GOA:Q7WR84" FT /db_xref="InterPro:IPR016037" FT /db_xref="UniProtKB/Swiss-Prot:Q7WR84" FT /protein_id="CAE30574.1" FT /translation="MDVVEVATPGGSYPIHIGPGRLDALDASIPADATAIAVVTNPTVA FT GLYGARVEAALARTGKRVLRIELPDGEAHKDWQTLNLIFDALLENRLDRRAVLVALGGG FT VIGDMTGFAAAVYMRGIRFVQVPTTLLAQVDSSVGGKTAVNHPLGKNMIGAFYQPVAVE FT IDTEVLGTLPAREVSAGLAEVIKYGLILDAGFWQWCEDNVGALRALEPRALAYAIRRSC FT ELKAQVVGQDERESGLRAILNLGHTFGHAIESGLGYGEWLHGEAVGCGMVQAAELSTLA FT AGFPAADVQRVRDLVREIGCPTVAPDLGAERWLALMQVDKKTEGGEIRFVLMPRIGQAL FT SRAAPEADVRTALERTTR" FT misc_feature 66802..67818 FT /note="HMMPfam hit to PF01761, DE 3-dehydroquinate FT synthase, score 5e-168" FT misc_feature 67042..67110 FT /note="1 probable transmembrane helix predicted for BB0072 FT by TMHMM2.0 at aa 96-118" FT misc_feature 67234..67254 FT /note="PS00307 Legume lectins beta-chain signature." FT CDS 67830..68984 FT /transl_table=11 FT /locus_tag="BB0073" FT /product="putative phosphohydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3658" FT /db_xref="GOA:Q7WR83" FT /db_xref="InterPro:IPR006674" FT /db_xref="UniProtKB/Swiss-Prot:Q7WR83" FT /protein_id="CAE30575.1" FT /translation="MNKDGTVVLMNELASYASDPSKTRGRRHSEPPPENRTEFQRDRDR FT IIHSNAFRRLEYKTQVFVNHEGDLFRTRLTHSLEVAQIARTLARSLRVSEDLTEAIALA FT HDLGHTPFGHAGQDELNACMRELAPQAGGFEHNLQSLRVVDELEERYAEFNGLNLCFET FT REGILKHCSATHARQLGAVGERFLDRTQPSLEAQLANLADEVAYNNHDVDDGLRSGLIT FT LEQLQEVGIFARHYAEVARRYPQLAPRRATSETIRRMINTLIVDLTATSLARIRDHAPA FT SADDVRRAPPLAGFSAAVRREADELKKFLFDNLYRHYRVVRMTTKAQRIVRELFQAFLG FT DPRLLPPDYRREQPQDQARAISDYIAGMTDRYAIREHRRLFEMG" FT misc_feature 68046..68453 FT /note="HMMPfam hit to PF01966, DE HD domain, score 4e-14" FT CDS complement(69158..69817) FT /transl_table=11 FT /locus_tag="BB0074" FT /product="putative glutathione S-transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3659" FT /db_xref="GOA:Q7WR82" FT /db_xref="HSSP:1E6B" FT /db_xref="InterPro:IPR012335" FT /db_xref="UniProtKB/TrEMBL:Q7WR82" FT /protein_id="CAE30576.1" FT /translation="MYTLLIANKNYSSWSLRAWLALRQAGIPFEEQKLGLLTEAFTQRL FT QAITPAGLVPVLLDGDFAVWDSLAICEYVAERHPDAQLWPADRRARARARSLAAQMHSG FT FGALRQTMPMNIEARLPGIDLSAAQADISRVQAIWHDTRAEFGQSGPFLFGRFSIADAF FT YAPVVSRFQTYGVAAAGAVRDYMEAVQALPAMQAWTRDALAEATFVADDEPYRTHR" FT misc_feature complement(69590..69817) FT /note="HMMPfam hit to PF02798, DE Glutathione FT S-transferase, N-terminal domain, score 2.2e-08" FT CDS complement(69874..72732) FT /transl_table=11 FT /gene="uvrA" FT /locus_tag="BB0075" FT /product="excinuclease ABC subunit A" FT /note="ortholog of Bordetella pertussis (BX470248) BP3660" FT /db_xref="GOA:Q7WR81" FT /db_xref="InterPro:IPR004602" FT /db_xref="UniProtKB/TrEMBL:Q7WR81" FT /protein_id="CAE30577.1" FT /translation="MDAIRIRGARTHNLKNVSLDLPRHQLVVVTGLSGSGKSSLAFDTL FT YAEGQRRYVESLSAYARQFLQLMDKPDVDLIEGLSPAISIEQKSAGHNPRSTVGTITEI FT HDYLRLLYARVGTPYCPDHGLPLQAQSVGQMVDAVLAWPAEARLAVLAPIARARKGSFE FT DELASLQAQGFVRLRVDGQLQEIEQLPALKKTEKHDLDVVIDRLRIRPESQQRLAESFE FT TALQLAEGRAIALDMDSGREQVFSSRYACPICSHSLAELEPRLFSFNNPMGACPGCDGI FT GQVGFFDPKRVVAFPELSLAAGAIRGWDRRNSFTHSLLTSLATHYEFDIDTPFEELPAE FT VREKVLHGSGEEEIAFFYVNEKGRSTVKRHPFEGVIPNLERRWRETDSATVREELGKYR FT NIKTCPDCGGSRLRPEARNVLIGSEPREGERHGQAIFEVESMPLSVCLDWFRQLQLTGA FT KQEIAQRIVREIEARLSFLNNVGLNYLSLDRSADTISGGEAQRIRLASQIGSGLTGVMY FT VLDEPSIGLHQRDNDRLIGTLQHLRDLGNSVIVVEHDEDMIRCADWVVDMGPGAGEHGG FT QVVAQGTPEAVQTDPQSLTGQYLSGARAIEIPARRPVADDQPWLHLSGATGNNLKSVDL FT RIPAARLVCVTGVSGSGKSTLVNDTLAVALARQLNHAQGEPAPYAGLAGLEHFDKTISV FT DQSPIGRTPRSNPATYTGLFTPIRELFAGVPEARARGYDPGRFSFNVKGGRCEACQGDG FT VVKVEMHFLPDMYVPCDVCHGKRYNRETLEIRYRGRNISEVLDLTVEQALEYFESVPAI FT ARKLHTLIDVGLSYIRLGQSATTLSGGEAQRVKLSLELSRRSTGRTLYILDEPTTGLHF FT HDIELLLKVLNQLVDSGNTVLIIEHNLDVIKTADWLVDMGPEGGDGGGRVVAQGTPEQV FT AASPDSHTGHYLGRVLRNGKRR" FT misc_feature complement(70000..70815) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1e-27" FT misc_feature complement(70183..70227) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(70411..70428) FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature complement(70771..70794) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(71023..71685) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 4.4e-06" FT misc_feature complement(71209..71253) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(72619..72642) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 72888..74072 FT /transl_table=11 FT /locus_tag="BB0076" FT /product="putative transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3661" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7WR80" FT /protein_id="CAE30578.1" FT /translation="MPADQKLQLTRSERRASVALAGLFACRMLGLFLLLPVFAVAARDL FT PGGNDPARVGLALGMYGLTQAFMQIPFGLASDRWGRRPVVVAGLVLFIIGSVVCALADD FT VYWITLGRAIQGAGAISAAVTAWLADATRDEVRTRAMAMVGGSIGLSFAVSLVAAPVLV FT GWWGLSGLFWTIACLGLASLAVARWMVPVVPRTEARTMQGASARAVLLHADLLRLNFGV FT FVLHLIQVALFVVTPSLLARLGGLDARDLWRVYLPVILVSFVLMVPAVFVAEKRRAHRA FT ALRAAVAGLIVVCALLPLAAHGFYALALALTGFFVAFNILEALQPSLVSRVAPAQYKGL FT ALGFYNTAQAAGLFAGGALGGWLAASGGADAVYIAAAALAALWLAVTWALRPLR" FT misc_feature 72888..73010 FT /note="Signal peptide predicted for BB0076 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.975) with cleavage site FT probability 0.391 between residues 41 and 42" FT misc_feature 72933..72965 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature join(72936..73004,73047..73115,73134..73193,73203..73271, FT 73305..73373,73401..73469,73530..73598,73641..73709, FT 73728..73787,73797..73850,73911..73979,73989..74057) FT /note="12 probable transmembrane helices predicted for FT BB0076 by TMHMM2.0 at aa 17-39, 54-76, 83-102, 106-128, FT 140-162, 172-194, 215-237, 252-274, 281-300, 304-321, FT 342-364 and 368-390" FT misc_feature 72939..74066 FT /note="HMMPfam hit to PF00083, DE Sugar (and other) FT transporter, score 0.0029" FT CDS 74305..74805 FT /transl_table=11 FT /gene="ssb" FT /locus_tag="BB0077" FT /product="single-strand binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3662" FT /db_xref="GOA:P66847" FT /db_xref="InterPro:IPR011344" FT /db_xref="UniProtKB/Swiss-Prot:P66847" FT /protein_id="CAE30579.1" FT /translation="MASVNKVILVGNLGRDPEVRYSPDGAAICNVSIATTSQWKDKASG FT ERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEGRLKTRKWQDKDTGADRYSTEIVAD FT QMQMLGGRDSGGDSGGGYGGGYDDAPRQQRAPAQRPAAAPQRPAPQAAPAANLADMDDD FT IPF" FT misc_feature 74314..74352 FT /note="PS00735 Single-strand binding protein family FT signature 1." FT misc_feature 74314..74634 FT /note="HMMPfam hit to PF00436, DE Single-strand binding FT protein family, score 2.3e-61" FT misc_feature 74455..74484 FT /note="PS00736 Single-strand binding protein family FT signature 2." FT CDS 75038..77152 FT /transl_table=11 FT /gene="bfrC" FT /locus_tag="BB0078" FT /product="ferric siderophore receptor" FT /note="ortholog of Bordetella pertussis (BX470248) BP3663" FT /db_xref="GOA:Q7WR78" FT /db_xref="InterPro:IPR010105" FT /db_xref="UniProtKB/TrEMBL:Q7WR78" FT /protein_id="CAE30580.1" FT /translation="MPALFMLALGAVAAGARAQPAAAGVPDTQGVAQMPAVTVNAAPVD FT DTLEHLEAPVDTGALGRRTQLETPFSTTVVTARDMEERQVNKLGDVFALDASVTDNSAS FT YGAWASYLTVRGLPLDWQNSYRIDGRPFLSYVTTLPFEHFEQIDLLKGASGFMYGFGSP FT GGLVNYVTKKPTDEAVRSVELGYMSKGLLREHVDLGGRVGESGALGYRLNATHEEGNTY FT NGGSLYRDSVSLALDARLSDRLTWDFQSIYQDRKAIGQEPTIYAGTMAGSELPSPVRND FT NDRLVGQGPYADNAFRYYSTGLKYQLADEWTLSTNYSYSSTRTRRNESVLFLRDQAGDY FT DDYRSDYGEAYGYNQWQAMLEGKFATGPLKHHVVAGASWQKQKNDYSANGVYQLQGTGN FT LRARNTNTYYSEGQLHLYRAAEITQKALFASDTVDLTGGWSVLGGLRYTNYAQQGFDAT FT GARTSRYDKNGVLTPTFALMYKLTPRTMAYASYIESLEPGSSVGATYANFGALLDPLKS FT KQYELGIKTEQDGWAATAALFRIEKKAEYANAANELVQDGKTLYQGLELGASTRIARDW FT NVGGSLMLLDSEYKKGSDFTGNRVAGAPKFVAAAQLAYSVPQVPGLKLRADVKYTGNTM FT LGASNRVQVDDYAIVNIGATYDTQIHGYEATFTAGINNVANKRYWLYQSSDYVKAGDPR FT TYGLTASLKF" FT misc_feature 75038..75106 FT /note="Signal peptide predicted for BB0078 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.848 between residues 23 and 24" FT misc_feature 76829..77146 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00593, DE TonB dependent receptor FT C-terminal region, score 7.2e-22" FT misc_feature 77096..77146 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="PS01156 TonB-dependent receptor proteins signature FT 2." FT CDS 77289..77792 FT /transl_table=11 FT /locus_tag="BB0079" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3664" FT /db_xref="UniProtKB/TrEMBL:Q7WR77" FT /protein_id="CAE30581.1" FT /translation="MGHGIAGGTGLAARNEAPELIRALDRDDERCWVPLAPGAWFYPMA FT FDVRNGAWHSVFRVAPGAQLPTHYHLGRVVGCTLRGRWHYRERDWEHRPGSYLLEVPGD FT SHTFEVIGEETVELFTVNEGGFLLLDERGDVTGITDVLLRLEQARAHYERVGLGRAAID FT SLIR" FT CDS 77811..78590 FT /transl_table=11 FT /locus_tag="BB0080" FT /product="putative aldolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3665" FT /db_xref="GOA:Q7WR76" FT /db_xref="InterPro:IPR005000" FT /db_xref="UniProtKB/TrEMBL:Q7WR76" FT /protein_id="CAE30582.1" FT /translation="MTTLKARLRQGQAITMIGNSLPDTYAAEMVASAGFDAVMIDLQHS FT AIGLHEVNDLARAVRAQGCAPVVRVAANDPAAITKVLDGGVDAVVAPMINSAEACRQFI FT SACYYAPLGDRSFGPYLGQVIQRQSIQDYYAQTRDRLLPIAMIENEEGVRQAEQIMRTE FT GLGAIYVGASDLSIAMGMDCVPDYRNARLLDCIKGLIDLGERCGIPVGAFAPTLEDSLM FT LQSLGSRILWVGSDQGFIKAGCAARAQQYHAESSPRR" FT misc_feature 77814..78566 FT /note="HMMPfam hit to PF03328, DE HpcH/HpaI aldolase FT family, score 9.2e-20" FT CDS 78619..79635 FT /transl_table=11 FT /locus_tag="BB0081" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3666" FT /db_xref="GOA:Q7WR75" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7WR75" FT /protein_id="CAE30583.1" FT /translation="MKTLASMVRWPRIAGAVVRQACAAALGLALGAAPALADYPSRPVT FT LVVPSPPGGSTDAIARVLADALGKRLGQSIVIENKGGGGGIVGSSYVLDKPADGHTLLL FT AISSKTVARALQPALAYDPIRDFTAVALVSRVPTVMVTSVAAGLPDFARLKAYIAANPG FT KTAWAVPGIGTAPHLTEHVLMQALGGKVNEIQYRGSAPMHVDLLAGRVDVVVDSYTALR FT QHIDDRKVVPVAVIGRGRIEAMSAVPTLGELGYRTFEEVLFDGWNAIDVRASTPPEVVA FT RLSQALQDVLADRAFRERVVQLGLVPFAPMPASQAQDFVQDVSRVLSPVAASLAAAQ" FT misc_feature 78619..78729 FT /note="Signal peptide predicted for BB0081 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.995 between residues 37 and 38" FT misc_feature 78793..79626 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 2.5e-59" FT CDS 79689..80483 FT /transl_table=11 FT /locus_tag="BB0082" FT /product="GntR family regulatory proteins" FT /note="ortholog of Bordetella pertussis (BX470248) BP3667" FT /db_xref="GOA:Q7WR74" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WR74" FT /protein_id="CAE30584.1" FT /translation="MSASVDVLSLPEVEAAASADTPNLLYWTIYQGLVRSIEADTAAVG FT KDLPIERLISAHYSASRFTVRQALDLLEKRGYIRKQRAKPARVISRSPVVPVERHLRRL FT SDILSPAVIHQTRVTGFGPARHDEAAATLGQAPGAQLYRLQLVHADQAQNIGFSDIYFP FT AHIGQRLSLQDFDAAARNGPLFVYPIVEQKIGFKVDHARINIGAESHARAQRTAVAEAL FT GTAPLVRVQYVFSHAGEPVQFTTNWLDSRFFSVSYELAEGEF" FT misc_feature 79773..79952 FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 5.9e-06" FT CDS complement(80480..81421) FT /transl_table=11 FT /locus_tag="BB0083" FT /product="transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3668" FT /db_xref="GOA:Q7WR73" FT /db_xref="InterPro:IPR005119" FT /db_xref="UniProtKB/TrEMBL:Q7WR73" FT /protein_id="CAE30585.1" FT /translation="MIAKHLDLNLLMIFDAILAEGHVTRAAERLAMSQSAVSKGLAQLR FT QAFGDPLFLRASRGVVPTHRALEIADQVRQAIAALNSLAGPVTEFDARSAHAHFNIGAT FT DYVSFVLLPGLMRRLQETAPHVSLTLHDMESMMPEEMLLAGKVDLVISSVASVNFPIYR FT QELFRDHYVCLCRAGHPALADPVPIEQFVSSRHLAMPRQNGARERVLQDTLQRLGVTRD FT VAVQVPHMLAIPATLTATDLVATMACRVAREFAARHPLQVLAHPLPLPDFPVSQLWHDR FT TRRSPSHQWLRDTVYDLARVNACPAPQDGAPG" FT misc_feature complement(80522..81148) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 1.6e-26" FT misc_feature complement(81221..81400) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 9.9e-23" FT misc_feature complement(81266..81358) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(81296..81361) FT /note="Predicted helix-turn-helix motif with score FT 1238.000, SD 3.40 at aa 21-42, sequence FT GHVTRAAERLAMSQSAVSKGLA" FT CDS 81701..83191 FT /transl_table=11 FT /locus_tag="BB0084" FT /product="putative chlorohydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3669" FT /db_xref="GOA:Q7WR72" FT /db_xref="InterPro:IPR006680" FT /db_xref="UniProtKB/TrEMBL:Q7WR72" FT /protein_id="CAE30586.1" FT /translation="MLTQIKGEWVLGFADGNHRMLRDASVVYEGERIVHVGTEFDGVAD FT RVIDARGCLVAPGFIDTHVHSGHRALHKLLADGGRPDLFGQPYMDVTIARDGTRIKGYP FT NYLSREEAAVDPGIALHAAFTVAELLRNGVTTFVELGGHVMVQEALWRECERLGVRGYL FT GPGYDSGRWAADDQGRLRRVPYPDGGDHLFEEAVAFIKRVQAAGNDLVNGILVPREVEN FT CSVDILRRTVQAAQELGVPMATHAGYNVIEFYETVREHRMTPIELLHSVGMLGPRLNIG FT HANLISDSPRLNYSGGRDLALMGEHRVSISHCPINIVRRARVLDSWKKYREAGVNLTIG FT SDTYPRDMVMNMRTASYHGKVMSHDLTAASAAEVFEAATLGGARSLGRTDIGRLEPGAR FT ADVIAINVGRQDVLRYGPIWDPIRSLVECGVGDDVELVVTNGQVRMEQGRIAGVDLGAL FT RAEAQQFADNVWRDLQDWDPLRRTAQAMCPPSFCPDCM" FT misc_feature 82085..83023 FT /note="HMMPfam hit to PF01685, DE Chlorohydrolase, score FT 1.5e-20" FT CDS 83230..84216 FT /transl_table=11 FT /locus_tag="BB0085" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3670" FT /db_xref="GOA:Q7WR71" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7WR71" FT /protein_id="CAE30587.1" FT /translation="MKKLMQWGAALALAVTCGAAQAGDAVAAYPQRPVRLIVPYGAGGA FT ADVLARIMAEKLSAIWKQPVIVENKPGGVGTIGIMATVQAEPDGYTLVSVPVSDLAVNP FT HLYRKRPFDVRKDLAPVSQVGAVPNVLLVSNALEVGDVQALVARAAAKPGYLTYSSPGV FT GSQAHIAAEMFAMRAGLSLQHIPYNSVPAALTDVAGGQIDMMFAQLPAVLPFVKSGRVK FT VLAVAADARTPLLPDLPTLGEVGGPSIGDAISWSAVMAPAGTPLALREKIAAGIASAIQ FT SPQVREKLAAQGLIGLGGTPQQLEQAWRQDYERYGAAVKAMHIQLLD" FT misc_feature 83230..83295 FT /note="Signal peptide predicted for BB0085 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.993 between residues 22 and 23" FT misc_feature 83374..84201 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 4.1e-79" FT CDS 84369..85514 FT /transl_table=11 FT /locus_tag="BB0086" FT /product="putative glycosyl transferases" FT /note="ortholog of Bordetella pertussis (BX470248) BP3671" FT /db_xref="GOA:Q7WR70" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7WR70" FT /protein_id="CAE30588.1" FT /translation="MSQPHPLRIAHAEAAIGFGGQEQRILKEALAMRERGHHVELICRP FT QARLIERARDADIRVHTVPMGGLRNFVRGVPRVRRILREGGFDVLNTHSRIDTLLAGAG FT ARLAGTPLVVRTRHLSNRVNSMLSYTWIPHRVSTVSDHVRRYLIERGVSPAHIETIYSP FT INLPPPGLRSTLRDELGLPADAVVVACVAIMRATKGHRELIEALRPLMASRPQVHLVLV FT GNGSPLFEQLQALIAELGLGERIHMLGFRDDVPNVLAGSDIFALPTRKEASGTVFVEAA FT ACGLPVVGVDVGGVSEMLRNGETGLLVPPDDAAALQGALRSLIDDASLRARMGGAGERM FT VRDEGKFSLARLAERTELVYRKWLAERRDAPTAASRSARQS" FT misc_feature 84879..85388 FT /note="HMMPfam hit to PF00534, DE Glycosyl transferases FT group 1, score 8.2e-43" FT CDS 85521..86339 FT /transl_table=11 FT /locus_tag="BB0087" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3672" FT /db_xref="InterPro:IPR019647" FT /db_xref="UniProtKB/TrEMBL:Q7WR69" FT /protein_id="CAE30589.1" FT /translation="MSIPTSRLAAVQALPQDIAPQTPRDRMPAVLPVMDVVPAATDWPP FT FAVVDLLGATLLATGSERDVYQHPGNAALLIKIVNRARINEPGRRRPWHKKFHREDAHR FT VFITELVEYISTTVQLRQADGNTLLARIAGLALTSAGLGLVVEKIVDAEGKAAPTLAQV FT VSTQGFGPQLREQLRAFFLALIEAHVIFNDVSARNIVVGRNATGQDGLFLVDGFGPKQL FT LPLYAWSKTLNRRRLLRKYEDMVRKLARLGDRLARQAGQPLPGDGARPPR" FT CDS 86499..87470 FT /transl_table=11 FT /locus_tag="BB0088" FT /product="LysR family regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3673" FT /db_xref="GOA:Q7WR68" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WR68" FT /protein_id="CAE30590.1" FT /translation="MGALKNDSSLDVRMLRIFAAVAAADSLSAAAQALNITQSAVSQTV FT TQIESILGMRVLDRTRRPYRLTPAGVALQRQSRQIVDDIDRLIAQVREADLMNRPAIRI FT GMIDSFAATTGPAIVKRLTQSASQVLVWSGLAYGHAQALLNRQVDIIVTTDALEDVDGL FT VRRPILNEPFVVVAPAVRADEFAPLDLRQMAQAAPFIRFSGRSHFGAMIERHLRRCGVT FT APPFLEIDTSDVVMAMIAANLGWALMTPLCLLQGRSWLDQVVVLPLPGPSLARTLHQVS FT RLEEYQEMADMFWQLSRQALETEIFPQVTTQLPWLGRQMRLC" FT misc_feature 86499..86591 FT /note="Signal peptide predicted for BB0088 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.974) with cleavage site FT probability 0.638 between residues 31 and 32" FT misc_feature 86532..86711 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 3.3e-20" FT misc_feature 86571..86636 FT /note="Predicted helix-turn-helix motif with score FT 1583.000, SD 4.58 at aa 25-46, sequence FT DSLSAAAQALNITQSAVSQTVT" FT misc_feature 86574..86666 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 86781..87404 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 2.3e-19" FT CDS 87496..88497 FT /transl_table=11 FT /locus_tag="BB0089" FT /product="periplasmic solute-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3674" FT /db_xref="InterPro:IPR006311" FT /db_xref="UniProtKB/TrEMBL:Q7WR67" FT /protein_id="CAE30591.1" FT /translation="MQETRRQFIKGMAIGAAALALPVAGRSWAAQAEAVRYGGSAWLGH FT YPAWLAIQAGYFKAENLEVGWESFGTTSARVSALLSGNIDMAVTAAPAALAVMSRGSRH FT FAIIGVPENFGRVEGLIVRSQVARLEDLKGKKVGVTFASSAHLLVLNLLDQAGLKAGKD FT VTVLNVPAPELPAAFQSGQIDAAAAWTPQFNAIRAMPDAKVLVDDTSFSLYKEYGVTPG FT PDVLVARRAFLDKNPEAVKRFLKAYFRANEQLKTQPDATVAALTELTKLSAADQLEMVK FT GADWYTAAEQGALLAPGSKYIDGLQKLAEMMVRYDQIDKAPPVREWVDAAYL" FT misc_feature 87496..87582 FT /note="Signal peptide predicted for BB0089 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.959 between residues 29 and 30" FT CDS 88561..89331 FT /transl_table=11 FT /locus_tag="BB0090" FT /product="ABC transport system permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3675" FT /db_xref="GOA:Q7WR66" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7WR66" FT /protein_id="CAE30592.1" FT /translation="MNAQNRQRRPDLLLISSVSVIVLLLFWEAVCRLQWVDALFLPPPS FT DVFARMGNMWEQGSLLDHIVASARRVMVGFAAATALAIPLGIFLGTSQRARAAFDPILS FT FLRPLPSMSWIPLSLLWFGITETQKYSIVFMGTFAPALLYVIEATRNIDPLLIRAARNL FT GASGPQVMRSVILPASLPQIFSGFKVILGLSWTCVISAELVAAKEGLGFLIMNGKEFFQ FT TDTVVLGMALISVTVLVTDVVFRIIENRVLAWSR" FT misc_feature join(88594..88653,88771..88830,88867..88935,88948..89016, FT 89107..89175,89233..89301) FT /note="6 probable transmembrane helices predicted for FT BB0090 by TMHMM2.0 at aa 12-31, 71-90, 103-125, 130-152, FT 183-205 and 225-247" FT misc_feature 89002..89235 FT /note="HMMPfam hit to PF00528, DE Binding-protein-dependent FT transport systems inner membrane component, score 5.2e-06" FT CDS 89319..90110 FT /transl_table=11 FT /locus_tag="BB0091" FT /product="ABC transporter ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3676" FT /db_xref="GOA:Q7WR65" FT /db_xref="HSSP:1F3O" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WR65" FT /protein_id="CAE30593.1" FT /translation="MVAVNDPMISIEGISKSFGSFQALQGVDLKIPRGEFLVVLGASGC FT GKSTLLNLITGFERPTAGRIVVNGREVVDVDPHCGMVFQQYALFPWLTVAENVAFGLKM FT KGVAAATRRETAQQFIEMVGLKGFENAYPKALSGGMRQRVSIARVLANDPDVILLDEPF FT AALDAMTRQVLQEELTRIYEQSGKTIVFITHSIDEALLLSSRMVIMSARPGRVACDMPN FT DLPYPRNADVQLSPRYIELKSQIWDIVQNEVMRSLQARADQ" FT misc_feature 89418..89954 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.3e-65" FT misc_feature 89439..89462 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 89724..89768 FT /note="PS00211 ABC transporters family signature." FT CDS 90138..91454 FT /transl_table=11 FT /locus_tag="BB0092" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3677" FT /db_xref="GOA:Q7WR64" FT /db_xref="InterPro:IPR006076" FT /db_xref="UniProtKB/TrEMBL:Q7WR64" FT /protein_id="CAE30594.1" FT /translation="MSSPSGSSRTFPQYQSGSGWNAMLPKRTPRTAAPARRHFKSLVIG FT AGYTGLAAARRLAELQPQDQVLVVDATVAGEGSAGRNSGFLINLPHNTRMSGHHSPLEV FT ARKQIAMLQSGLDWLAQLSGQGGFDCGWDLAGKYHAAATADGEQSLRGALQQYGQWGVA FT FSELDRDALQAQLGTRYYRFGYHSMNNVFVQPAALIRGLADSLPENVWLMEDNPVLSID FT GSGPYKVRTRGGEFTADNVILANNAFARRLGFLRSRLVTIFTYAGVTPVLSPAQQALLG FT ERDQWGVIPANRLGTTLRRISGGRFMVRSAYSYEAEQPLERMEQLLRDSFVRRYPDLAA FT HDFEYVWSGSTGLTGNGASFVGAIQPGLYASVGCNGAGVIKGTIYGKLLGEQVAGHRSA FT MLDDLASFEKPNWLPPEPLRRIGALSTIAYQARKAGLEK" FT misc_feature 91227..91259 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(91591..91779) FT /transl_table=11 FT /locus_tag="BB0093" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3678" FT /db_xref="UniProtKB/TrEMBL:Q7WR63" FT /protein_id="CAE30595.1" FT /translation="MARRRAPVFFDQIRTIVRKEEIMKMIAIGAGVMLLAGLVRACQGW FT RRLLRQLPDRNEDMTLF" FT misc_feature complement(91657..91779) FT /note="Signal peptide predicted for BB0093 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.687) with cleavage site FT probability 0.684 between residues 41 and 42" FT CDS complement(91788..92432) FT /transl_table=11 FT /locus_tag="BB0094" FT /product="TetR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3679" FT /db_xref="GOA:Q7WR62" FT /db_xref="InterPro:IPR012287" FT /db_xref="UniProtKB/TrEMBL:Q7WR62" FT /protein_id="CAE30596.1" FT /translation="MPGRHFSHDRAKLAGMSIPKSELTFAAIVDAALDMAAAQGMESLT FT LGEVAKRLGISKSGVFSRVGSREALLHAVLQEYDRRFLGAVFAPAMAAPRGLPRLDAMV FT GHWIERAANVEALTGCIYVAGAFEYDDVDNPMRGRVQANVRGWRAALGRTVRQAIDEGH FT LRPDTDPEQLVFEIYSLMVGLMHDARFLRDPRAHERVRQAYARLIATYRNT" FT misc_feature complement(92211..92351) FT /note="HMMPfam hit to PF00440, DE Bacterial regulatory FT proteins, tetR family, score 1.8e-11" FT misc_feature complement(92238..92303) FT /note="Predicted helix-turn-helix motif with score FT 1374.000, SD 3.87 at aa 44-65, sequence FT LTLGEVAKRLGISKSGVFSRVG" FT CDS complement(92468..94645) FT /transl_table=11 FT /gene="glcB" FT /gene_synonym="glc" FT /locus_tag="BB0095" FT /product="malate synthase G" FT /EC_number="4.1.3.2" FT /note="ortholog of Bordetella pertussis (BX470248) BP3680" FT /db_xref="GOA:Q7WR61" FT /db_xref="HSSP:1P7T" FT /db_xref="InterPro:IPR006253" FT /db_xref="UniProtKB/Swiss-Prot:Q7WR61" FT /protein_id="CAE30597.1" FT /translation="MTERIPHHGLQVAASLHRFIEDEALSGSGLAPDEFWAGFAALVRD FT LAPRNRELLAERDRLQGEIDAWHRAHPGPVRDSAGYQALLERIGYLQPQPAQVTASTRD FT VDSEIASQAGPQLVVPVSNARYALNAANARWGSLYDALYGTDAIPPVAGDDGKGYNPAR FT GEAVIARARAFLDEAAPLAQGSHADATAYAIEGGKLAVTLGAGQRTGLRNPAQLAGYQG FT DASQPAAVLLANNGLHFEIQIDRQHQIGATDAAGVKDVLLEAALTTIMDCEDSVAAVDA FT DDKVLIYRNWLGLMKGDLSESVTKGGKTFTRRLNADRQYHKPDGGTLTLHGRSLMFVRN FT VGHLMTNPAILDEQGNEVPEGILDAVITSLAALPDRANRLNSRTGSIYIVKPKMHGPAE FT AAFANELFDRVEDLLKLPRHTIKMGIMDEERRTSVNLKACIAAAAARVAFINTGFLDRT FT GDEMHTGMEAGPMLRKGDMKSSAWITAYERNNVLVGLDCGLRGRAQIGKGMWAMPDMMA FT AMLEQKIGHPKAGANTAWVPSPTAATLHAMHYHQVDVAAVQQALEQTRYDSVRDELLAG FT LLTVPVGDPAAWSADDIQRELDNNAQGILGYVVRWIDQGVGCSKVPDINNVGLMEDRAT FT LRISSQHIANWLRHGIVDRAQVNATFERMAKVVDQQNAGDPNYLPMAGHFDTSFAYRAA FT CALVFEGLTQPNGYTEPLLHEYRQAFKAAQR" FT misc_feature complement(92552..94597) FT /note="HMMPfam hit to PF01274, DE Malate synthase, score 0" FT CDS 94889..95653 FT /transl_table=11 FT /gene="glcC" FT /locus_tag="BB0096" FT /product="GntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3681" FT /db_xref="GOA:Q7WR60" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WR60" FT /protein_id="CAE30598.1" FT /translation="METGVDGARKQIAEVVAERIERLILDGVLKAGQALPSERRLTEKL FT GVSRTALREGLRVLRARQIIHTAQGKGSYVAQISQVDAGPLVHLFNSQPRTLYDLLEVR FT ALLESESARLAAIRGTDADFIMIRRRYDEMLAAHGRETDSATHAHLDHAFHLAICQASH FT NAVLVHTLQSLTDLLLGSVFACVNNLYHREPHKRHIDQQHERLFLAVLAREPEQAHQAA FT RAHVDSVRQSLAEIEQEEQRLVRATLRLEGWV" FT misc_feature 94934..95113 FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 2.7e-16" FT misc_feature 94991..95065 FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT CDS complement(95650..96777) FT /transl_table=11 FT /locus_tag="BB0097" FT /product="putative dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3682" FT /db_xref="GOA:Q7WR59" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7WR59" FT /protein_id="CAE30599.1" FT /translation="MVRPPYPIAILGAGKIGAAIALLLQRGGDYDILVADQDPARLQAV FT ARLGCRTAQVRDDDALQQAVSGRYAVLNALPFHRARAAAAACVRAGAHYFDLTEDVAST FT HAIRELAASAGTMLMPQCGLAPGFIGVVGSDLSRRFDRLLDLRMRVGALPRFPSNALRY FT NLTWSTEGLINEYCNACEAIVDGALVAVPPMEGYETFTLDGIEYEAFNTSGGLGTLPQT FT LLGKARNVDYKSIRYPGHCAIMKLLLNDLRLRERRDLLQEILESAIPSTDQDVIVILAS FT ASGYRQQRLVQESFSARIYGATVDGQTLSAIQLSTAAGVCTMLDLAVHGHLPQRGFIGQ FT EQVPLAALLENRYGRIYAGQPLPAREAPQALLPGS" FT CDS complement(97002..97388) FT /transl_table=11 FT /locus_tag="BB0098" FT /product="Putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3683" FT /db_xref="UniProtKB/TrEMBL:Q7WR58" FT /protein_id="CAE30600.1" FT /translation="MKTLATAVMLSMTMAAGAQAADLGAEPTRAQVQAELVQAKANGQY FT TFGEQDYPAAITQGSALSAAEVRDDLAQAKAAGEVTFGNLDYPPQASNVNSSMTRAQVQ FT ADLAQAKNDGVVTFGNLDYPPQHG" FT misc_feature complement(97329..97388) FT /note="Signal peptide predicted for BB0098 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.993 between residues 20 and 21" FT CDS complement(97654..98580) FT /transl_table=11 FT /locus_tag="BB0099" FT /product="UbiA prenyltransferase family protein" FT /EC_number="2.5.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3684" FT /db_xref="GOA:Q7WR57" FT /db_xref="InterPro:IPR006370" FT /db_xref="UniProtKB/TrEMBL:Q7WR57" FT /protein_id="CAE30601.1" FT /translation="MSASQQQSVDLNDIVFTDWVERWLPRPWRPYARLCRLDRPIGTWL FT TLLPCIAALVQAAGGLPDLRRLLIFSLGALLMRGIGCTVNDMWDRDIDKHVERTRFRPL FT TSGQLSMRQAVAFLIGQLLVCASLLFFINDMSRWLAVAVLPFVFIYPFCKRVTYWPQVV FT LGICFNWGMLMAWSDTQDHLPLAAIAMWLGAVLWQVGYDSIYAYVDVRDDRSLGLHSTA FT MRFGEQGKLWIGGFYAATLALWTWGGYAMDLGWGYFAGIGAVAIHLAWQLREFDLQRPE FT RNFKLFRANLWTGVLLIAAALAGTLPY" FT misc_feature complement(join(97663..97731,97765..97824,97837..97896, FT 97957..98025,98053..98106,98125..98178,98188..98256, FT 98317..98385,98395..98463)) FT /note="9 probable transmembrane helices predicted for FT BB0099 by TMHMM2.0 at aa 40-62, 66-88, 109-131, 135-152, FT 159-176, 186-208, 229-248, 253-272 and 284-306" FT misc_feature complement(97666..98454) FT /note="HMMPfam hit to PF01040, DE UbiA prenyltransferase FT family, score 2.8e-62" FT misc_feature complement(98260..98328) FT /note="PS00943 UbiA prenyltransferase family signature." FT CDS complement(98667..99866) FT /transl_table=11 FT /locus_tag="BB0100" FT /product="putative aminotransferase" FT /EC_number="2.6.1.44" FT /note="ortholog of Bordetella pertussis (BX470248) BP3685" FT /db_xref="GOA:Q7WR56" FT /db_xref="InterPro:IPR015421" FT /db_xref="UniProtKB/TrEMBL:Q7WR56" FT /protein_id="CAE30602.1" FT /translation="MDKPFEPECSFSERAKQLTSSAIREILKVTERPEVISFAGGLPAP FT GGFPVEVVQAAFDKVLATNGRAALQYGPTEGYAPLRQWVADDLNAAGANVTADQILIVS FT GSQQALDLLGKVLIDKDSPILVEDPSYLGALQSFSLYQPKYVPIPTDDGGLVPEAITAE FT LAEGARFLYALPNFQNPTGRTLNLERRKALVRQAAQFGVPIIEDDPYGELRYAGEPQPG FT LLALAGECGATVIRLGTFSKVLAPGLRLGYIAAPRNIINKLVQAKQATDLHTPTLTQMA FT VYEVVKTGFLAEHLPRVREIYRVQGRCMLEAIEREFPASVSWTKPEGGMFIWVTLPEHI FT DSTKLLAQAVEQNVAFVPGGPFYAGTPRQNTLRLSFATVPEAKIREGIAILGKLLKAAI FT " FT misc_feature complement(98682..99596) FT /note="HMMPfam hit to PF00155, DE Aminotransferase class I FT and II, score 2.3e-06" FT CDS 100005..100499 FT /transl_table=11 FT /locus_tag="BB0101" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3686" FT /db_xref="HSSP:1VHM" FT /db_xref="InterPro:IPR003018" FT /db_xref="UniProtKB/TrEMBL:Q7WR55" FT /protein_id="CAE30603.1" FT /translation="MFDATPISTVSKPVFYAELAAQARALLAGEHDRIANAANFSALVY FT QALPDINWAGFYFHDGQELVLGPFQGKPACVRIALSRGVCGAAASQRRTQVVPDVHAFP FT GHIACDAASRAEIVVPLVHQGSLLGVWDVDSPLPGRFDDEDRAGMEALCEVFLHSLGSA FT D" FT misc_feature 100098..100484 FT /note="HMMPfam hit to PF01590, DE GAF domain, score FT 5.1e-06" FT CDS 100787..101686 FT /transl_table=11 FT /locus_tag="BB0102" FT /product="putative dihydrodipicolinate synthase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3687" FT /db_xref="GOA:Q7WR54" FT /db_xref="HSSP:1DHP" FT /db_xref="InterPro:IPR002220" FT /db_xref="UniProtKB/TrEMBL:Q7WR54" FT /protein_id="CAE30604.1" FT /translation="MQYPAQSPFQGIWIPLVTPFADGAVDLPALRKLVRDYKAAGVDGL FT VACGSTGEAAALDEAEQLAVLDAVLEEAGALPVAMGLAGNHQGHVLRRLARLGERPLAG FT VLAPAPYYVRPSQAGAQAYFRALADASAAPLILYDIPYRTGAQLDTATLLALAEHPNIA FT AVKDCGGSVDKTLALIAHGGMAVLAGEDLQGLGTLCLGGTGMIAAAAHVRPDLFVAMHR FT AVRAQQLGQAQRLFLALAPVIRLLFAEPNPAPLKALLASQGRLRNEMRAPMLPAAEALA FT ARLRAELDALDRAFAPGV" FT misc_feature 100808..101662 FT /note="HMMPfam hit to PF00701, DE Dihydrodipicolinate FT synthetase family, score 1.9e-43" FT misc_feature 100916..100969 FT /note="PS00665 Dihydrodipicolinate synthetase signature 1." FT misc_feature 101198..101290 FT /note="PS00666 Dihydrodipicolinate synthetase signature 2." FT CDS 101913..102689 FT /transl_table=11 FT /locus_tag="BB0103" FT /product="putative desaturase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3205" FT /db_xref="GOA:Q7WR53" FT /db_xref="InterPro:IPR006694" FT /db_xref="UniProtKB/TrEMBL:Q7WR53" FT /protein_id="CAE30605.1" FT /translation="MGQAFAALSVWQVMGYGLVFFGGIYLLFGAATWLLTRRVLPALGV FT GRPLDPRPLGPGQWRREFLQSGLSVLIFGLGMVFPWGLVQLGWARLDDDAGPWRIVAEI FT LVLVIWNDVHFWINHRLLHTRLLRRFHLPHHRSVVTTPFSTYSFHPIEALMLGNVILLP FT MVVHDFSFWSLLSVPLFSLFFNCVGHANYDFFPGVSYAHWFAASRRHHLHHACYQGNFG FT FQFTFMDRLFGTRLGADAAQGQLAAYRKRGAVGSAR" FT misc_feature 101937..102572 FT /note="HMMPfam hit to PF01598, DE Sterol desaturase, score FT 1.7e-05" FT misc_feature join(101949..102017,102111..102179,102207..102266) FT /note="3 probable transmembrane helices predicted for FT BB0104 by TMHMM2.0 at aa 13-35, 67-89 and 99-118" FT CDS 102673..103551 FT /transl_table=11 FT /locus_tag="BB0105" FT /product="putative fatty acid desaturase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3207" FT /db_xref="GOA:Q7WR52" FT /db_xref="InterPro:IPR005804" FT /db_xref="UniProtKB/TrEMBL:Q7WR52" FT /protein_id="CAE30606.1" FT /translation="MVRPAEWLRHRRDWQSILYLAALPALAAWQWVHGWHWALYAPMLF FT LTLGVGVIHHNHAHRRMWRPRWLNCLTDFWLTLLQGHPTFVFHAAHNANHHRYKHGPRD FT VARTYRFGGDTNHLAGYLLHPLQAVVVLYPLFLASLRRLRSRRPGVWRYCLRQYAAWLG FT LWGGLLALDPGKAFWLVIVPQLHGLHWLLATNYLQHAHADGGPGRHAALSYARNFEGWV FT NPLLFNIGLHTAHHENPRAHWSELRALHWQHYRDRVPSRLNERGLAPYMARVFVLGLFS FT RRCRTHTLMRP" FT misc_feature 102673..102753 FT /note="Signal peptide predicted for BB0105 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.628) with cleavage site FT probability 0.624 between residues 27 and 28" FT misc_feature join(102718..102771,102781..102834,102871..102939, FT 103024..103092,103150..103218) FT /note="5 probable transmembrane helices predicted for FT BB0105 by TMHMM2.0 at aa 16-33, 37-54, 67-89, 118-140 and FT 160-182" FT misc_feature 102790..103443 FT /note="HMMPfam hit to PF00487, DE Fatty acid desaturase, FT score 0.00014" FT CDS 103579..105492 FT /transl_table=11 FT /locus_tag="BB0106" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3208" FT /db_xref="GOA:Q7WR51" FT /db_xref="InterPro:IPR013747" FT /db_xref="UniProtKB/TrEMBL:Q7WR51" FT /protein_id="CAE30607.1" FT /translation="MPVAFDRVYLHSAGYFLPGEPVDNDAMDQYIAPLNRISGRIKNRI FT LAENGIRQRYYAIDPEGRTRWSNAQLAAQAIQACLARGDADLSQVSLLASGSSGGDTLM FT PGFANMIQGELSAAPLETLSVHGICAAGVGAIQAAAQGIELGAHRRALAVASELPSRLF FT KRSRFAAPGYDADFDAHFLRWMLSDGAGAMLLGDASQPLAGAANGVRLRLKWIHQRSFS FT GDYPVCMQLGQSAGGQAHLDYGSWSEAEAAGALLLRQDIRLLPHLFDIGIHEYAKLVHD FT GWVDPRQVSHFLCHYSSEKFIPVVEDLMDKAGLAIARERWFSNLAWRGNTGAASILIML FT AEFLQTRTVQPGEQIFCYIPESGRFMAAYMLLQAEGPDETAQPARARAVPAAAPAGEAD FT FIAPPHDPAHAPQGLEPLLGELAAIWHDYRSRVWRTPVIRHLRQGRFAASDYLNWMENW FT VPQVREGSKWMREAAASLSETYQPLAALIGTHAGEEQDDFKILFQDYRNAGGAVEDIDA FT LRRNPGGEALNAYLHALAATRDPIGLLGAIYVIEGTGQRIVPALLPLLKAALALPPDAF FT RFLEYHGHNDENHLARWLLAVELALDCDDSGRARQQIVDTARRTAALYLMQFQHVMEER FT TA" FT misc_feature 103783..103815 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 103948..103980 FT /note="PS00639 Eukaryotic thiol (cysteine) proteases FT histidine active site." FT CDS 105489..106370 FT /transl_table=11 FT /locus_tag="BB0107" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q7WR50" FT /protein_id="CAE30608.1" FT /translation="MSRPEPDFLSQPHDPADPDPWRALYLDRSTPLPDPVKQAWLADSS FT SASRQYLLPFLRPLARAFIILIQVVKTFLPRRWSHSRLLHRILAWGLEHFVSPQANWLI FT LRHFHLGAQILAFIARNAPVQVETTPLEPARIADLRDELFVKHDLNLFNFVIRLNQALR FT DAGQTMHAPEQVDYSMIRDPGLRLEDMPQRRRNFLDLQSAIELFTPLYQLMLTDNDFWR FT AANSLQLDETIGIYAAQLLGAPQHLILVNNKHPLVPMSTLRAGYRLVLHGLSTEMLHSL FT LMQMKQQQAEQA" FT CDS complement(106377..107714) FT /transl_table=11 FT /locus_tag="BB0108" FT /product="probable amino acid permease" FT /db_xref="GOA:Q7WR49" FT /db_xref="InterPro:IPR004841" FT /db_xref="UniProtKB/TrEMBL:Q7WR49" FT /protein_id="CAE30609.1" FT /translation="MTRAAESGMAQARGLSVLDAVAVLVGVVIGIGIFGFPPLVAQHAQ FT SESVYLALWLGGAAVMLMGALCYAELGSAYPGAGGEYLYLRHAWGPRVALLFAWARCTV FT IQTGAIAVVAFIYGEYAQELAPLGTHGVALHAAIAVIALTLLNIMGTQPSKRIQLVFTV FT LTLAALAAVVATGLSAPPAPPAPVEPLAGSTLGLLGMGLVFVLLTYGGWNEAAYLSGEL FT REARRNMAKVLLIGTAVVAGAYLLTNLALLQIFGLQGLRETRAVAATLMTLAAGPYAAI FT VLSLLVCVTALSTINGTILTGARVYSALGQDVPRLRPLAGWSMRGQTPTSALLAQGAIT FT LVLLGYGAYAHDGVQTLVAYTAPVFWLFMLLVAASVWRLRRLDPHRPRPFRVPLYPLPP FT LLLGLTCAGLVWSSARYAGVGALLGLAVLAAGLPALRLLRAAPRSA" FT misc_feature complement(join(106401..106469,106479..106547, FT 106584..106652,106665..106724,106827..106895, FT 106953..107021,107082..107150,107178..107246, FT 107265..107321,107364..107432,107493..107561, FT 107589..107657)) FT /note="12 probable transmembrane helices predicted for FT BB0108 by TMHMM2.0 at aa 20-42, 52-74, 95-117, 132-150, FT 157-179, 189-211, 232-254, 274-296, 331-350, 355-377, FT 390-412 and 416-438" FT misc_feature complement(106407..107597) FT /note="HMMPfam hit to PF00324, DE Amino acid permease, FT score 0.024" FT CDS complement(107711..108556) FT /transl_table=11 FT /locus_tag="BB0109" FT /product="Putative methyltransferase" FT /db_xref="GOA:Q7WR48" FT /db_xref="InterPro:IPR013216" FT /db_xref="UniProtKB/TrEMBL:Q7WR48" FT /protein_id="CAE30610.1" FT /translation="MRTLVAPTHAPKRRMLLALLATPALALAQPAWTQQPPPVKLDVPY FT VPTPDDAVARMLEMADVTAQDTVIDLGSGDGRIAIAAVRDRGARSAMGVDIDPERIAEA FT RANARKAGLADRVTFVQQDLFDTDISKATVLTMYLLPDVNLKLRPRILNSLAPGTRVVS FT HAFTMGEWDSDRYELVDGRSLYLWVVPAHAAGDWQVEDPAGPFTLSVRQDFQKVTASAQ FT RQGERLGVAEAALRGTDLRFTVDAGSGPRTYVGRIQGDRMTAVQAPGNESGWRATRRAP FT " FT misc_feature complement(108458..108556) FT /note="Signal peptide predicted for BB0109 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.865 between residues 33 and 34" FT CDS 108997..111906 FT /transl_table=11 FT /locus_tag="BB0110" FT /product="putative adhesin" FT /note="Similar to Bordetella bronchiseptica putative outer FT membrane ligand binding protein BipA SWALL:Q9APE8 FT (EMBL:AF304006) (1578 aa) fasta scores: E(): 1.2e-114, FT 48.69% id in 807 aa, and to Escherichia coli O157:H7 FT putative adhesin EaeH or z0375 or ecs0336 SWALL:Q8X6G3 FT (EMBL:AE005207) (1417 aa) fasta scores: E(): 2.8e-16, FT 23.87% id in 1001 aa" FT /db_xref="UniProtKB/TrEMBL:Q7WR47" FT /protein_id="CAE30611.1" FT /translation="MKQAIHAVAFRHDALARVGRVHRRRGAAALAGVLTLQTVAPAFAQ FT GAPSFSARPAQADRQDAADSAMLRVAQTARQLAQRQAAGSRASARVDGDLLKGQAEAQA FT NELLQEGVRLANQTELPFLRRLQGGVNYDFSNKDLSLDLRTIDEVHRGERDRVLLQLSG FT HNRNHRPTVNGGVVLRHALNQHMAVGANAFLDYEFGKNHLRGSLGGEVIAPQFTLYGNV FT YAPMSGWKAAKRAERREERPASGWDVGVRLQPEALPGLAIKGQYFRWSGAAVDYFDNGR FT PQRNARGYKYGVEYRPVPLVAVGLEQTKVLGGARQTTVQLGVNLSLGEPLSRQLRHQSG FT PAFDLQARMGEFVERENRIVLQTRRKHVVLPLTIARVDTDPATGRITVTGVTEPGAQVS FT LGLPNGEVVVAQADGSGTYRATSARDMVGGPVRARATNRHGDRSREVTHHYVDVAVKGE FT VPLTLGAVRTHPGTGVVTVTGKTGPGAKVRIDFPDGTFGDVVAGNGGDFTVASKGDVTA FT SGPIVAIARDDDGRESPRRTVQYDDRVNGGGSGAPTVVLHTDGTNGRVTVSGKGRPGDT FT IRVDFPDGTTKEVVAGPDGTYRVTSDRDMTAGDITVSGTDAKGNVGGPVKRPYHDIFVP FT VPPTVEVATDSSSGRVTVSGKATPRAKVKVDFPGGTSKTVTADADGRYRATSDGDVPGG FT DIVVTQTGMPGAAGKPVRRPYVDTVAPTPMKVTIDSMRTDGNSGVVTVTGYTVGGSTVT FT VTFPDGTTAGTTANDRGKYTVTSTADIPAGPIRVSARGPRNQQGSATDHYLDAWTKQTL FT LGGKIRLLRPVARLLLSPGSMTYTEIAKSFDGSSLDGIVARFEPANGAPPQTAALLAAI FT KLHDPNYRLESNKMFIYLDTMNSDPYNRVPNGDYPVTLVLEDKATGAREATTMVLKVTG FT STYGKAPVVPGANGVLGTGPGPSLGGSLLIGGEGGLLGS" FT misc_feature 108997..109128 FT /note="Signal peptide predicted for BB0110 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.962) with cleavage site FT probability 0.910 between residues 44 and 45" FT CDS 112001..113629 FT /transl_table=11 FT /locus_tag="BB0111" FT /product="putative dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) FT BP3209+BP0705" FT /db_xref="GOA:Q7WR46" FT /db_xref="HSSP:1CF3" FT /db_xref="InterPro:IPR012132" FT /db_xref="UniProtKB/TrEMBL:Q7WR46" FT /protein_id="CAE30612.1" FT /translation="MCATAVDTGMEFDYIIVGAGSAGCVLANRLSADPSVRVLLLEAGG FT ADSWHWIHIPVGYLYCIGNPRTDWCYRTQADPGLNGRSLGYPRGRVLGGSSSINGMIYM FT RGQRADYDGWAAQGNPGWGWDDVLPLFKASEDHHGGASAFHGAGGEWRVERQRLSWKLL FT DAFRAAAAQAGIASIDDFNQGDNEGCDYFEVNQRSGVRWNTAKGFLRPAMDRGNLKVLT FT GARVARVVFQNRRAVGVRFLAEGGGEQYAQARGEVVLAAGAIGSAQLLQVSGVGPAALL FT QARGVPVLHDLPGVGANLQDHLQLRLIYRVQGARTLNGVAGTLWGKAWMGLQYAVQRRG FT PLSMAPSQLGAFARSGPEQSRANLEYHVQPLSLEKFGDPLHDFPAFTASVCNLRPTSRG FT HVRIVSPDPGEHPEILCNYLSTEADRKVAADSIRLTRRIVAQPALARYQPQEYKPGAQW FT QSEEDLQRLAGEIGTTIFHPVGTCRMGDDAQAVVDAALRVHGLQGLRVIDASIMPTITS FT GNTNSPTIMIAEKGAQLLREARRQT" FT misc_feature 112034..113593 FT /note="HMMPfam hit to PF00732, DE GMC oxidoreductase, score FT 8.5e-184" FT misc_feature 112040..112072 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 112265..112336 FT /note="PS00623 GMC oxidoreductases signature 1." FT CDS 113756..115042 FT /transl_table=11 FT /locus_tag="BB0112" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0706" FT /db_xref="InterPro:IPR009978" FT /db_xref="UniProtKB/TrEMBL:Q7WR45" FT /protein_id="CAE30613.1" FT /translation="MPHAIEIVATLLFSVAVLHTFSVPFFARLAHRNGPHAGVWHLLSE FT VEAVFGVWAFVLIACMALMAGTDRAVQYMDTRNFTEPLFVFAIMVVASSRPILELVGSL FT VRLLAAMVPVRRELATFFIVMSIVPLGGSFITEPAAMTLAAILLRDGYFRCSGRAGFKY FT MTLGVLFVNVSIGGVLTSYAAPPVLMVAATFGWDTAYMATHFGWRAAVAVCLNAAVLTM FT LCRQALLEGAVGTGAGVNASDDAAEKRPPVPAPVTLMHLAFLVGIVLTAHHPAVFLGML FT MMFIGFAHAYQRHQSRLMIREGLMVGFFLAGLVVLGGLQKWWLQDLLGGLEPTVLFWGA FT TALTAITDNAALTYLGSLVEGTSEAWRYMLVAGAVTGGGLTVIANAPNPAGFAILGKYF FT PDGSISSGRLFIAALVPTLVAAAMFMLPV" FT misc_feature join(113774..113842,113900..113968,114002..114070, FT 114128..114196,114257..114325,114542..114610, FT 114647..114715,114758..114826,114863..114931, FT 114974..115033) FT /note="10 probable transmembrane helices predicted for FT BB0112 by TMHMM2.0 at aa 7-29, 49-71, 83-105, 125-147, FT 168-190, 263-285, 298-320, 335-357, 370-392 and 407-426" FT CDS 115216..115515 FT /transl_table=11 FT /locus_tag="BB0113" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0707" FT /db_xref="InterPro:IPR013429" FT /db_xref="UniProtKB/TrEMBL:Q7WR44" FT /protein_id="CAE30614.1" FT /translation="MPIYAYKCSACGHAEDVLQKISDAPLADCPACGQSTYSKQVTAAG FT FQLKGSGWYVTDFRNNNGAGKPAAGQSAAPAASGGDAGSAPATPAPAAPAATST" FT CDS 115516..116181 FT /transl_table=11 FT /locus_tag="BB0114" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0708" FT /db_xref="InterPro:IPR007462" FT /db_xref="UniProtKB/TrEMBL:Q7WR43" FT /protein_id="CAE30615.1" FT /translation="MRHSVMRVFKKYFITGLLIWVPLAITVWVLGLLVATLEGFVPGFL FT SSQSLFGVDIPGFRFVLVITVVLLTGVFAANLLGRSLLEHWERILGRIPLVRSIYNSVK FT QVSDTVLAPNGRAFRQAVLIQYPRAGSWTIAFLTGTPSGEVASYLPGEHLSVYVPTTPN FT PTSGFFLMMPRDQVIDLQMSVDAALKYIVSMGVVAPADRRPVSPPTTPGAPLAPGAEP" FT misc_feature 115516..115671 FT /note="Signal peptide predicted for BB0114 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.823) with cleavage site FT probability 0.419 between residues 52 and 53" FT misc_feature join(115552..115620,115678..115746) FT /note="2 probable transmembrane helices predicted for FT BB0114 by TMHMM2.0 at aa 13-35 and 55-77" FT CDS 116222..118012 FT /transl_table=11 FT /gene="aspS" FT /gene_synonym="tls" FT /locus_tag="BB0115" FT /product="aspartyl-tRNA synthetase" FT /EC_number="6.1.1.12" FT /note="ortholog of Bordetella pertussis (BX470248) BP0709" FT /db_xref="GOA:Q7WR42" FT /db_xref="InterPro:IPR018153" FT /db_xref="UniProtKB/Swiss-Prot:Q7WR42" FT /protein_id="CAE30616.1" FT /translation="MRTCYTGQVCRDHLGQTVTLYGWVNRRRDHGGVIFIDLRDRTGLA FT QIVFDPDNAEAFGTAERLRNEFCISITGLVRLRPEGTANAELASGEVEVLCQQVEILNA FT SVTPPFQLDDDNLSETTRLTHRVLDLRRPQMQHNLMLRYRVSIEVRKYLDQLGFIDIET FT PMLTKSTPEGARDYLVPSRVNAGYFFALPQSPQLFKQMLMVSGFDRYYQITKCFRDEDL FT RADRQPEFTQIDCETSFLNEVEIREIFEGMIRHVFKVVQDVDLPTPFPIMSWTEAMQRY FT GSDKPDLRVNLEFTDMTDVMRDVDFKVFASAATTAGSRVVALRVQGGGEMSRSEIDAYT FT QFVGIYGAKGLAYIKVNDVAKGREGLQSPIVKNLHDAALAELVKRTGAQNGDIIFFGAD FT RAKVVNDAIGALRVKIGHSEFGKKAGLFSGGWKPLWVVDFPMFEYDEEENRYTAAHHPF FT TSPKDGHEDFLESDPGKAVAKAYDMVLNGWEIGGGSVRIHREEVQSKVFRALKIDAEEA FT REKFGFLLDALQYGAPPHGGIAFGLDRIITMMAGAESIRDVIAFPKTQRAQCLLTGAPS FT EVDEKQLRELHIRLRNVEVK" FT misc_feature 116273..116527 FT /note="HMMPfam hit to PF01336, DE OB-fold nucleic acid FT binding domain, score 2.1e-13" FT misc_feature 116573..117919 FT /note="HMMPfam hit to PF00152, DE tRNA synthetases class II FT (D, K and N), score 1.2e-13" FT misc_feature 116870..116923 FT /note="PS00179 Aminoacyl-transfer RNA synthetases class-II FT signature 1." FT misc_feature 117122..117445 FT /note="HMMPfam hit to PF02938, DE GAD domain, score FT 1.1e-39" FT misc_feature 117836..117865 FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2." FT CDS 118125..118985 FT /transl_table=11 FT /locus_tag="BB0116" FT /product="putative endonuclease/exonuclease/phosphatase FT family protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0710" FT /db_xref="GOA:Q7WR41" FT /db_xref="InterPro:IPR005135" FT /db_xref="UniProtKB/TrEMBL:Q7WR41" FT /protein_id="CAE30617.1" FT /translation="MSLIRVVSYNIHKGRSALGRRESLNDLRLGLYGLRPDLVFLQEVQ FT GRNEVSSVLHAQHESLAAALRLQAAYGRNAIRTGTDHGNALLSRFDILDHENQDISDHR FT LEQRGLLHARIDVGGTEVHCFVVHLGLFAGSRGRQIQALTDRIRQSVPDGAPLLIAGDF FT NDWGDRLAPMFVQQLGLYEVFSHAPRSHGGDLPRLRDSVRRLGNVLRGVPNSVAVLERN FT NQLGMGGAYCPLPPPRTFPAVFPWFRLDRIYQRGFAVRSARVLRGREWARLSDHSPLLA FT ELELP" FT misc_feature 118134..118973 FT /note="HMMPfam hit to PF03372, DE FT Endonuclease/Exonuclease/phosphatase family, score 2.8e-23" FT CDS 118982..120193 FT /transl_table=11 FT /locus_tag="BB0117" FT /product="putative phospholipase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0711" FT /db_xref="GOA:Q7WR40" FT /db_xref="InterPro:IPR001736" FT /db_xref="UniProtKB/TrEMBL:Q7WR40" FT /protein_id="CAE30618.1" FT /translation="MKGQIVRLHWTDGNAIRLLQNGGDFFPALCEAIDAARLSVHLETY FT IFLLDRTGRQVLECLESAARRGVKVRVVLDGFGSAGTAEAIRLRITQAGGQCRIFRPEP FT RWLGHLAFSRSRLRRLHRKVAVVDAELAFVGGINIVDDYDDLDPGDDIPAPRFDFAVAV FT QGPLVPHILYAQDLLWVRLNWARLRRHPGDWHRMRLFKPVHADASPAGKLRAALLLRDN FT LRFRQTFEQAYLYGIQHARRDILIANAYFFPGHQFRKSLMQAAARGVRVRLLLQGKPEY FT RMQYFATRALYDRLLRGGIEIYEYMPGYLHAKVAVIDNMATVGSSNLDPFSLLLAREAN FT VVVDDQPFAWDLQERLERAIALGGQFIRPLDYQRRGWLRRCIDVAAYTMLRIGVALTGR FT AGRY" FT misc_feature 119327..119410 FT /note="HMMPfam hit to PF00614, DE Phospholipase D. Active FT site motif, score 2.1e-05" FT misc_feature 119897..119977 FT /note="HMMPfam hit to PF00614, DE Phospholipase D. Active FT site motif, score 0.028" FT CDS complement(120194..121078) FT /transl_table=11 FT /locus_tag="BB0118" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0712" FT /db_xref="GOA:Q7WR39" FT /db_xref="InterPro:IPR000620" FT /db_xref="UniProtKB/TrEMBL:Q7WR39" FT /protein_id="CAE30619.1" FT /translation="MPRRDLVDLLALAAVWGGSFLFMRVAVPEFGPAALMELRVGLAAL FT FLLPLVLWRGKPALIARHWKAILVVGTLNSALPFLLYAYAAQSLGAGFLSVANAVTPVW FT GAVIGWLWLGDRLPRMRALGLLISMSGIVVLVWDKLDFHDGGTGPAVLAAISAPVFYGM FT AANWTKRYLGHVDALTNATGSMVAASLVLAPLAIIHWPEQAVSFEAWRATVLLAIVCTG FT AAYIVFFRLIARVGPTAAVSVTFLVPVFGVLWGVWFLDEAVTPRILAGAGVILAGTALA FT LGLVGARRAAAAN" FT misc_feature complement(join(120224..120292,120305..120364, FT 120383..120451,120479..120547,120584..120640, FT 120668..120721,120740..120808,120821..120889, FT 120923..120991,121001..121060)) FT /note="10 probable transmembrane helices predicted for FT BB0118 by TMHMM2.0 at aa 7-26, 30-52, 64-86, 91-113, FT 120-137, 147-165, 178-200, 210-232, 239-258 and 263-285" FT misc_feature complement(120230..120604) FT /note="HMMPfam hit to PF00892, DE Integral membrane protein FT DUF6, score 8.7e-22" FT misc_feature complement(120668..121039) FT /note="HMMPfam hit to PF00892, DE Integral membrane protein FT DUF6, score 1.5e-21" FT CDS complement(121094..122527) FT /transl_table=11 FT /locus_tag="BB0119" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0713" FT /db_xref="GOA:Q7WR38" FT /db_xref="InterPro:IPR001411" FT /db_xref="UniProtKB/TrEMBL:Q7WR38" FT /protein_id="CAE30620.1" FT /translation="MSAPPTQDPEITTTTQESPHSRRDLLRAMAGVSATVVLVAFDSTI FT VTTTLPRVAAALNGMALYAWVGTAYLLATAASILIFGRLGDMYGRKPLMLVSVSLVALG FT SIACGLAQSMPQLIAFRTLQGIGGGMMIATAFAAPADLFPDAGQRVRWMALVSATFAMA FT SGIGPVLGGAATQALGWRAAFFISPLAAVAALFLLARYFPRIRPAQTASRRIDWVGGLL FT LIVVVGAPLAAIELAFAPGDGAHPRVALALAVAGIAAVALLVPIERRVRSPIFPLRVLA FT GLEPRLLNLAAVAVGATMFILIFYSPLLLQHELDYSPSEAGLLLTPLVAAISFGSIING FT RLFPRQTEPQRLMVFGSCLLAAGSAMMLAVSAGTSAWWIVAAFFVNGTALGFLLPNLTL FT FMQMLSERRDVGVASALVQTTRAMGSAAGTALVGIAISHSSVLDGVRAGLILCVLLSLF FT SAVVAHRVKMKNVAATPAA" FT misc_feature complement(121127..122434) FT /note="HMMPfam hit to PF00083, DE Sugar (and other) FT transporter, score 0.0028" FT misc_feature complement(join(121139..121198,121226..121294, FT 121328..121396,121406..121474,121499..121567, FT 121610..121669,121730..121798,121826..121885, FT 121922..121990,122003..122071,122108..122176, FT 122186..122245,122282..122350,122378..122446)) FT /note="14 probable transmembrane helices predicted for FT BB0119 by TMHMM2.0 at aa 28-50, 60-82, 95-114, 118-140, FT 153-175, 180-202, 215-234, 244-266, 287-306, 321-343, FT 352-374, 378-400, 412-434 and 444-463" FT CDS complement(122578..123147) FT /transl_table=11 FT /locus_tag="BB0120" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0715" FT /db_xref="InterPro:IPR010419" FT /db_xref="UniProtKB/TrEMBL:Q7WR37" FT /protein_id="CAE30621.1" FT /translation="MRIADAQWIPSTPHQTWDALQDPDVLQKCLPGCIKVERRTPTEYE FT LVVRAKVAGLETDYQGEILLSDLDPPHSCTVAFEGKGLASGLAIGTAQVNLSPKDDGTR FT LSYTVAAMAGGKLAELGESTIMKAGNKIVEKFFAAFIDHMAGQPRLAPPPPPPEPEPRG FT LTNSRWSWAVALCVVLVILGYHTFFK" FT misc_feature complement(122584..122643) FT /note="1 probable transmembrane helix predicted for BB0120 FT by TMHMM2.0 at aa 169-188" FT misc_feature 123284..155070 FT /note="O-antigen biosynthetic locus" FT CDS 123421..124398 FT /transl_table=11 FT /locus_tag="BB0121" FT /product="NAD dependent epimerase/dehydratase family FT protein" FT /db_xref="GOA:Q7WR36" FT /db_xref="HSSP:1GY8" FT /db_xref="InterPro:IPR001509" FT /db_xref="UniProtKB/TrEMBL:Q7WR36" FT /protein_id="CAE30622.1" FT /translation="MKLEGAKILVIGGAGFIGSFVVAELLKHPVAEVVIYDNFARGKQS FT NIDEYLSDPRCRIYPNGGDIRDIDLLNDAMQGMDGVVHLAAMWLLHCKDFPRTAFHVNI FT EGTFNVLEACVRNNVKRLVYSSSASVYGDAVEVPMTEEHPFNNRNFYGASKIAGEAMCH FT AFHDRYGLSYVGLRYMNVYGPHQDQTAAYTGVIPIMLNKIDANEAPVINGDGTQAYDFV FT YVEDVARCNVLALTSEATDQFYNVGTGVQTSIKELCDTILDMKDSGLQVQYRPYSEDDA FT RRMVQNRIGCPVKASRDLGFTYQYALTEGLQKLIDWRAKNGAQS" FT misc_feature 123421..123489 FT /note="Signal peptide predicted for BB0121 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.606) with cleavage site FT probability 0.564 between residues 23 and 24" FT misc_feature 123442..124386 FT /note="HMMPfam hit to PF01370, DE NAD dependent FT epimerase/dehydratase family, score 3.5e-59" FT misc_feature 123832..123918 FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT CDS 124395..125555 FT /transl_table=11 FT /locus_tag="BB0122" FT /product="DegT/DnrJ/EryC1/StrS aminotransferase family FT protein" FT /db_xref="GOA:Q7WR35" FT /db_xref="HSSP:1B9H" FT /db_xref="InterPro:IPR006025" FT /db_xref="UniProtKB/TrEMBL:Q7WR35" FT /protein_id="CAE30623.1" FT /translation="MSGAAAKRSIAISLPMTGEEEWQAVREPLMSGWLTQGPKVAAFEQ FT AFAQRHEVAHALAVTSCTTGLHLALAGLGIGPGDEVIVPSFTWVATANAILYCGGTPVL FT VDVDRETFNIDIAQVASKVTPRTRAVIAVHLFGLCADIDALRAALPASVAIVEDAACAA FT GASWNGRPAGSLGEVGVFSFHPRKSVTTGEGGMVTTNDPELAERMNQMRNHGASISEEQ FT RHHGPRPWILADFDLLGYNYRMTDLQGAVGQVQLAKLDGFIDERARWAQFYREQLGDLK FT WLRLPAEPAGARHGWQSFVTWVDPAHAPMPRNDMMQRLQEQGIATRPGTHAVHMLGYYR FT EQYGYRPEDFPAARDCNDCTMAIPLHNRMTEDDYRYVVAAIRAFGG" FT misc_feature 124434..124451 FT /note="PS00343 Gram-positive cocci surface proteins FT 'anchoring' hexapeptide." FT misc_feature 124437..125540 FT /note="HMMPfam hit to PF01041, DE DegT/DnrJ/EryC1/StrS FT aminotransferase family, score 6.2e-147" FT misc_feature 124536..124565 FT /note="PS00142 Neutral zinc metallopeptidases, zinc-binding FT region signature." FT CDS 125694..127589 FT /transl_table=11 FT /locus_tag="BB0123" FT /product="putative asparagine synthetase" FT /EC_number="6.3.5.4" FT /note="Similar to Mycobacterium tuberculosis putative FT asparagine synthetase [glutamine-hydrolyzing] rv2201 or FT mt2257 or mtcy190.12 SWALL:ASNH_MYCTU (SWALL:Q10374) (652 FT aa) fasta scores: E(): 2.8e-41, 30.4% id in 671 aa" FT /db_xref="GOA:Q7WR34" FT /db_xref="HSSP:1CT9" FT /db_xref="InterPro:IPR017932" FT /db_xref="UniProtKB/TrEMBL:Q7WR34" FT /protein_id="CAE30624.1" FT /translation="MIHLDGAAVDPAVLQGMTDAIAHRGPDGEGHWIDGNVGLGHRRLA FT IIDLSPAGHQPMISADSRYVLSYNGEIYNFRELRAELQGEGCQFRSQTDSEVLLHALIV FT WGVERTLSRLNGMFAFAWWDTRERKLLLARDRYGVKPLYFSMQGTTLAFGSEQKAILAS FT AAFRRNLNKAALLEYFTFQNIFTDQTLLEDVHLLPAGHYAYLDCAKERPQLRLTQYWDF FT NFHEPAVPGTDTEYREELSRLFRQAVQRQLVSDVELGSYLSGGMDSGSITAVAAASHPY FT IKTFTCGFDLNSASGIELAFDERSKAEYMSYFFKTEHYEMVLKSGDMERVLPALAWHLE FT EPRVGQSYPNYYAAKLASKFVRVVLSGAGGDELFGGYPWRYYRAVVNNDFEHYVDKYYL FT FWQRLIPNSTLKQVFRPVWSDVSHVWTRNIFRDVFNSHADQLYSPEDYINHSLYFEAKT FT FMHGLLVVEDKLSMAHGLESRVPFLDNDLVDFATRCPVRLKLNNLADVIKLNENEPGHK FT TNKYFEKTRDGKQILRDVMRDYIPSDIAQAEKQGFSAPDASWFKGESMDFVKRTLFSKH FT ARIYEIMDADTVRSLVAEHLSGERNRRLLIWSLLNVESWLAQYLDHGGVAGKGLA" FT misc_feature 125709..126128 FT /note="HMMPfam hit to PF00310, DE Glutamine FT amidotransferases class-II, score 4.8e-21" FT misc_feature 126357..127304 FT /note="HMMPfam hit to PF00733, DE Asparagine synthase, FT score 7.9e-15" FT CDS 127586..128509 FT /transl_table=11 FT /locus_tag="BB0124" FT /product="putative UDP-glucose 4-epimerase" FT /note="Similar to Streptomyces venezuelae FT TDP-glucose-4,6-dehydratase DesiV SWALL:Q9ZGH3 FT (EMBL:AF079762) (337 aa) fasta scores: E(): 4e-12, 27.07% FT id in 314 aa, and to Pyrococcus abyssi UDP-glucose FT 4-epimerase Pab2145 SWALL:Q9V1X1 (EMBL:AJ248284) (307 aa) FT fasta scores: E(): 1.7e-13, 27.85% id in 298 aa" FT /db_xref="GOA:Q7WR33" FT /db_xref="HSSP:1GY8" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7WR33" FT /protein_id="CAE30625.1" FT /translation="MSGRIVVTGCHGLVGAEVLASLRHLGREAVGVGRQMSAQRPAQVI FT DLAGSEAAAALRCLRESGRPIDAVVHCAASFPAAFDSAEAVAIAQTNRRIDSTVIDFCH FT EIGARLVYCSSSSVYGRLDSTAVAESRALERATGYVAEKIWAEGEIAKRLPSYATLRLC FT APYGPGQKTRTVLRIFIERALQGAPILYFGTGSREQDFVHVKDIAAAVVAALDRPTVNG FT VFNISGGRPITMRELGMLVSRVIADGRVVVRAADRLDPQDGWRARFDLSNARSRLEWRP FT EMSLEAGIAQWAQVLKEQGDALGAAL" FT CDS 128487..129164 FT /transl_table=11 FT /locus_tag="BB0125" FT /product="putative phosphoesterase" FT /note="Similar to Methanopyrus kandleri diadenosine FT tetraphosphatase apah or mk0804 SWALL:Q8TX71 FT (EMBL:AE010371) (232 aa) fasta scores: E(): 4.9e-14, 32.68% FT id in 205 aa, and to Pyrococcus horikoshii hypothetical FT protein Ph1616 ph1616 SWALL:O59233 (EMBL:AP000006) (233 aa) FT fasta scores: E(): 1.6e-13, 35.21% id in 213 aa" FT /db_xref="GOA:Q7WR32" FT /db_xref="InterPro:IPR011152" FT /db_xref="UniProtKB/TrEMBL:Q7WR32" FT /protein_id="CAE30626.1" FT /translation="MRLALLSDVHGNLPVLELCLAEIARRGCHDTVCLGDVFGYFPDGV FT LCLERLKQAGIACLMGNHEAMLLGTLPLTPAQDQVYQLQEQAGRLPADVKQEVGGWLPY FT AVYRAGSLNLLLVHGSPWQPLNEYIYPDADLGRFSHLPYDAVFMGHTHRPFARDVNGRL FT VCNVGSCGLPRDIGKASFAIFDSERNDVEIVRLDIDVPMLRSRYPLVHESVYSVLARGA FT QAH" FT misc_feature 128487..128948 FT /note="HMMPfam hit to PF00149, DE Calcineurin-like FT phosphoesterase, score 3.4e-14" FT CDS 129177..130247 FT /transl_table=11 FT /locus_tag="BB0126" FT /product="conserved hypothetical protein" FT /note="Similar to Synechocystis sp. hypothetical protein FT Slr1616 slr1616 SWALL:P72894 (EMBL:D90901) (341 aa) fasta FT scores: E(): 1.4e-11, 35.77% id in 355 aa, and to FT Xanthomonas campestris hypothetical protein Xcc1931 xcc1931 FT SWALL:AAM41220 (EMBL:AE012297) (347 aa) fasta scores: E(): FT 5e-06, 26.72% id in 363 aa" FT /db_xref="GOA:Q7WR31" FT /db_xref="InterPro:IPR003806" FT /db_xref="UniProtKB/TrEMBL:Q7WR31" FT /protein_id="CAE30627.1" FT /translation="MQRISVLVTGVGGGGHGEQILKALRLARTPYHIIGGDMNPFSKGL FT AEVDKPYILPSANDPRYIDALLELCARHDVKAVFHGSEPELKAMSIARARFEQAGVFLP FT INPAAVIDLCMDKARTSEWLRRHGFDVPRTVAVNSLADLGKVDFFPAVLKPSVGGGGSA FT NLFLAQDREELDFLGASLLANIGAYIVQEYVGDTDSEFTVGVLLDMNGQLLNSIAVRRM FT ILSGLSNRIRVKNRSPLSHLGSTLAISSGVSQGDVGPYPEVTKTCERIATELGCRGAVN FT IQCRLVEGRVYVFEINPRFSGTTSLRAMVGYNEPDVLIRKHVLGEEIAPRFSYKSGRVV FT RGLAEVLLSDEPIERV" FT CDS 130255..131418 FT /transl_table=11 FT /locus_tag="BB0127" FT /product="putative C-methyltransferase" FT /note="Similar to Streptomyces rishiriensis FT C-methyltransferase CouU SWALL:Q9F8S9 (EMBL:AF235050) (420 FT aa) fasta scores: E(): 7.6e-07, 25.95% id in 339 aa, and to FT Rhizobium meliloti putative NDP-hexose FT 3-C-methyltransferase protein Rb0640 or Smb21061 FT SWALL:Q92VQ9 (EMBL:AL603644) (415 aa) fasta scores: E(): FT 3.4e-09, 29.64% id in 280 aa" FT /db_xref="GOA:Q7WR30" FT /db_xref="InterPro:IPR013217" FT /db_xref="UniProtKB/TrEMBL:Q7WR30" FT /protein_id="CAE30628.1" FT /translation="MELQLMQWQVGDLPFFYRCQPQPSNAPYGLPDSLPFCLEFDSALG FT LIRQSPNTQVEAALERCYQHGSTISGMMDSGGIGQQYARDFLDFIAHHETDLTGKRVLE FT IGCGTGYLLSLLKQKGADVLGIEPGAQGQGGQQRHGVPIIDGFFPHPKAEGKFDLIVAY FT AVLEHIGEPQGFLEKIADSLAPDGVAYIAVPDCAPYIENGDISCLLHEHWSYFDASSLQ FT RLLEVSGFAAAVQPAGFGGSIYARAVRVSHKTKPVNDEIDLAGNGFERFRSLALGAGQR FT LERFLAGPGQAGIYVPGRMINLLASLDSVDLAQVRLFDDNEALTGLYFPGMPNPIEDFS FT GLVERPPARLLIATKSFHFQIADRIEHASVEVPLLAWSDLFLVAAPK" FT CDS 131477..132247 FT /transl_table=11 FT /gene="wbmS" FT /locus_tag="BB0128" FT /product="hypothetical protein" FT /db_xref="PDB:3HFT" FT /db_xref="UniProtKB/TrEMBL:Q7WR29" FT /protein_id="CAE30629.1" FT /translation="MAGAAHRLMEARMRRYDNKFARISDIDINQPESWRGRIFLTFDID FT WAADFVLQDTIDLIEGAGVCATWFATHSTPLLENIRRNPLFELGVHPNFNPLLAGAHAE FT GVQEILDRTLELAPGCVSVRSHSLVQATSILNMFGERRLRYDCNILVPWDAGIVLQPWR FT HWTGDMVRVPYLWEDDVACLYDWEFDSTFDYWYQPDGINVLDFHPIHVYMNTESLRRYE FT DSREVHRNPVDLIRWRNTSAGSRTFLQSLLARNI" FT CDS 132244..133173 FT /transl_table=11 FT /gene="wbmR" FT /locus_tag="BB0129" FT /product="putative formyl transferase" FT /db_xref="GOA:Q7WR28" FT /db_xref="InterPro:IPR015518" FT /db_xref="UniProtKB/TrEMBL:Q7WR28" FT /protein_id="CAE30630.1" FT /translation="MKFAAIGRHEALLHTIDMLVEAGHQLSYILTAKEAPEYSAGVVDF FT ERKGRQFGVPVYVTPRLTPEWVDKMRQHAVDIAVSLNFPTVIERDAIGVFPFGILNAHG FT GDLPRYRGNACQAWALINAEPEIGLCVHKMVGGELDSGDVIAKDMLPVDHHTRIRTVAQ FT WIEEQTPKLFCAALEQLARDPQYVLYRQTDDPRPPLRCFPRRPEDGRIDWSRTAKDVVR FT HINASGPPYAGAFFEYEAQRYLVYEADWVAGGEYLAIPGQVVARNQDGSIEIACGGDGY FT CRLSSISRVDDEWVLPGFLIKSVRERVF" FT misc_feature 132244..132774 FT /note="HMMPfam hit to PF00551, DE Formyl transferase, score FT 4.3e-09" FT misc_feature 132856..133158 FT /note="HMMPfam hit to PF02911, DE Formyl transferase, FT C-terminal domain, score 1.2e-14" FT CDS 133281..134606 FT /transl_table=11 FT /gene="wbmO" FT /locus_tag="BB0130" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q7WR27" FT /protein_id="CAE30631.1" FT /translation="MARSREERCVLELIKKLIEKEFFVKNRVFIVKYVVGPIFRLRRML FT FPRKAVLYAGQSYYHAWNTSRALRKLGWTADVLNWDMYEGTQIYYHGEDFKFTQDGEKG FT YQEQIDFYLSALWKYDIFHFSNIGGMVFGFPFQLSISQKYHRNFEIEVLRYLGKKIVYS FT HSGCLDGVSQTSFSRWPPMSVCSMCVWRDRPDVCSDEKNLAWGKYRNEMADYQLLFGGN FT HVDYNDDPRVHEEPEFFCTDPEFLHPGLEIPEKFRLDFPPNSVRLYHSVGNFVERTDEQ FT GVNIKSTHVYLPLIRRLKAEGYPVELISVTGVPNRDVRFYQAQADIILEMLSFGFFGAN FT GREALMLGKPLVCFIRPVWLESMRAEIPEYVDELPVVNATPETVYDVVKDLIENPEKRA FT EIGRRSRAFALKWHSTDAAGRRMDRVYRRLLRDQGYDSSRAP" FT CDS 134603..135772 FT /transl_table=11 FT /gene="wbmN" FT /locus_tag="BB0131" FT /product="ABC transporter ATP-binding protein" FT /db_xref="GOA:Q7WR26" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WR26" FT /protein_id="CAE30632.1" FT /translation="MSIAIRRDEEIALSCHGVSKSFVISGEQNIWRMFCALPVRGEVFA FT ALRDVSLEVPRGKIVGILGRNGAGKSTLLRVLGGVYQPTSGTVDVHGQVCGLFEMGGFG FT NRELSGREYATRYLTVMGAPRKDRGDLLADIAEFSELGADFDRKILTYSAGMAARLYFS FT TATAMRHEIYLIDELLSVGDEHFQAKCWIRMRNLLLNGASGILVTHDWVSTLKLCQQSH FT ILERGSIVASGRTDAAVVKYLDLPVPDGALARFCDSDRATWHAVAGEDAVFEFDIESEE FT DIPLVFTYSVELMRIGIGWDIMLLGQRPIGSGNGRRRVQLKVPALPLAPGEYSLTVGLI FT KEKTRAEDEAVICDARGWTTGNGYVLEVSGTLEQGTTILPMEISGWIDD" FT misc_feature 134771..135283 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.5e-21" FT misc_feature 134792..134815 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 135765..136973 FT /transl_table=11 FT /gene="wbmM" FT /locus_tag="BB0132" FT /product="ABC transporter ATP-binding protein" FT /db_xref="GOA:O87982" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:O87982" FT /protein_id="CAE30633.1" FT /translation="MTDSDLWIQVSDVRKHYAIGKSGLSDALVSAQSSANTGPGEKIAV FT DGISLTIRNGERLGIVGRNGAGKSTLLHMVAGLSAPTAGKIDVHGRVTAIMTLGLGLRE FT HASGRENIYIDGEVQGKSRVEIDAVIDEIIEFAELGEFIDMPVRTYSTGMKSRLAFAMI FT SCLEPEILIIDEALSAGDAKFSAKATRKIQEICAKGRIVILVSHSMASIQSMCNRCLWI FT DQGKIVMDGLPDQVCKAYIDAVRSEDEAKLLERFRDEASTRFSLDGWDVDALYVLQGDT FT ATQRVLLEAGEDALIRTKIQVPTGCEEAQLVMSVTRLDGLVVTQRRIALDKYTEAGVAR FT VQFAMRPLVLGQGVYRLEIAAELGQALVASRSMIFEVFVRQPPTGGVPMLLYPSEATAS FT LLS" FT misc_feature 135927..136439 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.7e-41" FT misc_feature 135948..135971 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 136980..137771 FT /transl_table=11 FT /gene="wbmL" FT /locus_tag="BB0133" FT /product="ABC transporter integral membrane protein" FT /db_xref="GOA:O87983" FT /db_xref="InterPro:IPR013525" FT /db_xref="UniProtKB/TrEMBL:O87983" FT /protein_id="CAE30634.1" FT /translation="MRIFGLERRDIGLIYNFFVLNVRDKYLGSRLGSVWAIANPLCMLG FT IFTFVFGFVYKAKLPGADTTLAYVTWLISGYGPWIALSEALMAGTMSVVSASGLVKNLA FT FKTEILPLAAVATGVVPLTVSLVFLTILLVADGSMPSWHVAWIPLVILLQFFFIAAIAL FT WLSAITVFVRDISFVLPSVLTVLMFATPVFYALDMMPQVVRRVSEFNPLYIIVEGYRQP FT LIHHASPSAWGLAYVFGISLVIFYSGMKAFRRVKGNFEGAL" FT misc_feature 136989..137759 FT /note="HMMPfam hit to PF01061, DE ABC-2 type transporter, FT score 5e-99" FT misc_feature join(137076..137144,137202..137270,137304..137372, FT 137415..137483,137502..137570,137670..137723) FT /note="6 probable transmembrane helices predicted for FT BB0133 by TMHMM2.0 at aa 33-55, 75-97, 109-131, 146-168, FT 175-197 and 231-248" FT CDS 137768..140368 FT /transl_table=11 FT /gene="wbmK" FT /locus_tag="BB0134" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q7WR25" FT /protein_id="CAE30635.1" FT /translation="MTVARYTEASASGLARHFDAVIILTDQPWREDPLDPRYVRARHFA FT GQLPVVVVEPGSVTPTGPLRMSGGIEVVAMTAQPTHEAVDRLTEALHEHSIRRPLFWLE FT DCRAYLELLDCWPNAMTVYRASGGGVAVGAGATVALREAATLFRQAMPRYVHLLVATDE FT HVAATYRRYGEYAGRIEVLADAYGSNFGQYLSVPQEAVPSRSVLYHGPIDDALDYELLH FT QLVHLLPDWKFVFCGAADDQLPAWRGLAAHGNVSHTPTPSAADFGAQCADAMAGILPFN FT MDARWTSRRRAAQALYEAAGLPVLDRAEGECQLQAQAWVAALHSSLAEGRAEAGADHKP FT GSSLLDAASHGAALGAMVEDAYLALLRRPLDHRLNVLVLYDDRWTHIGTVEEHLGAFQK FT YSRHNIFYLPVTRQSPEQDRRLAAEIDLSVFDVVIMHYAVRLSLKDYLPEPMALRIRRF FT TGLKVLFIQDEYDTTNTAKAWIKRLAFDIVYTCVPPAGREYVYPASDFHWTEFLSTLTG FT YVPEDPSLGQYLLPLREREILVAYRGRMLPYFYGSLGWQKYRIGVDVKALAQERGLPVD FT IEVDDTKRIYGTDWYRFLGSARATLGTESGSNVFDFDGNVRSEIERRLAQNPELPFAEL FT YNELLEPLERNIRMNQISPKIFEAIRLRTALVLFEGEYSGALTPGVHYIALSQDYANID FT EVFARLQDLDFLERMTERAYEDIVASGRYSYRSFVEGVDADIEQRWLCGPRARIYAAPV FT LATDRHGAAHVIMPSGTSGWCLSTSILSGTLQREQLAGHMSTAMGNWAQIMLAERKAAR FT RAYLRAQPRRYAGAAYRRSIALARRVWHRIPMPAAFRRQVVRGVRAAKTRLMGR" FT CDS 140424..143060 FT /transl_table=11 FT /gene="wbmJ" FT /locus_tag="BB0135" FT /product="hypothetical protein" FT /db_xref="GOA:Q7WR24" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7WR24" FT /protein_id="CAE30636.1" FT /translation="MRRVERLLLVCYYDPNGIETVLDNIGYVKAYSAFHVDILNLFGAA FT SALTRGEGYRLAAYDGVIIHNTISYNPANLESIDRQFVPALSQYEGVKIIFKQDEQYRT FT LAVAEFIGSRAFDLVFTCVDAQERAKVYPPDVVGDRVVFRQMYTGYVTPKLRARTTTGV FT ERDIDISYRGSLQPLYFGRLAYDKRRIGDEVLHAAQGTGLKTDISSRWEDRLMGEDWFR FT FLARSKSTLGVESGASIFDFDGAVEKLCGELEQRRSDFTDEHKYSEWVLQQLEPYEGNV FT YYNQISPRHFEAGAARTLQVMYEGRYSDIFQPWKHFVPLRKDLGNFQQVCEYVLDPRLR FT GEIVDRVYDEIIANPIYSMKHFIGELDQAVAEALERKPNRAAPTRRVPADGRDNVLLLC FT AHPPAADPRIGWVADFAPAGIRVHVMGVADDIAAPLVRQRAQGGLEITQPRGTGADWER FT LALMQDEQGAGLDVLCRLRMLEQMSQAQLNVLVDGGVTAERAYEFNWMCSYLRRTSQAL FT IAAAMNASGYSAIVAADFDSLIAAVVLKRLYGIPVLYDAHEFWPTSLGPATAPWEVALW FT QRLERRLLSEVDKSISVSPQLAAHMSNFYGHSFEAVPNCEPLQAATEPAPQHAPRDECV FT FLFQGNFMPGRGLALLIEAWGRTHPSAILQLRGPDRPYKRELERLAERTGLLGTRIFFP FT EAVAENALVAAAAQADVGLVPYEPTTLNSKYCSPNKLSQYMAAGLPILANRLEFVAQEI FT SLAGCGSVVDFAHGDELVRVVDHYAVDAQLRQREGECGRRYFRQHFHWEAVSAPLYTAL FT ASLSALPGKHESFSINVAGIGDGVGAGVDPRPVWKRTLSRLWGMLPTPAKSALKPMLLK FT LIARFRG" FT CDS 143161..145071 FT /transl_table=11 FT /gene="wbmI" FT /locus_tag="BB0136" FT /product="putative asparagine synthetase" FT /db_xref="GOA:O87986" FT /db_xref="HSSP:1CT9" FT /db_xref="InterPro:IPR017932" FT /db_xref="UniProtKB/TrEMBL:O87986" FT /protein_id="CAE30637.1" FT /translation="MCGIFGALWHQGKSVSAIEQQLQVGIARQQHRGPDGHGTWIDPQG FT RLGLAHVRLSIIDLVSGAQPMRGNSGNVITYNGEIYNYIELRRELGEDSFETTSDTEVI FT LRAYEKWGERCVDRLEGMFAFAIWDAKRGEMFVARDRFGIKPFYYACVQGGFYFGSEVK FT ALTPFLNRVETDANALHDYFAFQFCLGEKTLFAGVRQLKPAHCGYVGRDLELKQRQYWE FT VQYDLDWDHTEKYFVEQVREKLQHSVDMHMRSDVEVGAYISGGVDSSLVAAMARHGRRS FT SRFQGFTGKFALGDAFDESRYAQALADEHDILLHQVDITEDDFVNDIAKVIYHLDQPVA FT GPGSFPQYAVSRLAKDHVKVVLGGQGSDEMFGGYARYLIAYWEQCIKGALDGTMHDGNY FT IVTYESIIPNLRTLRNYKPLIQEFMAEGIFDSRDKRYYRLINRSNTFGNVVNWGMFEGI FT ASSFDDFKQIFWGKNVGKESYFDSITHFDFKTLLPALLQVEDRMSMAHGIESRVPFLDH FT KLIELVATVPANVKFQNGELKRLLRVAFQDMLPQAIRERKDKMGFPVPLQVWMRKGGKA FT REFILDTFRSQNARSRAYLAPGFDIEKMMEQEGLFSRNIWAFLSLELWQQQFHDVHRQT FT I" FT misc_feature 143161..143178 FT /note="PS00443 Glutamine amidotransferases class-II active FT site." FT misc_feature 143164..143610 FT /note="HMMPfam hit to PF00310, DE Glutamine FT amidotransferases class-II, score 2.2e-29" FT misc_feature 143179..143202 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 143812..144714 FT /note="HMMPfam hit to PF00733, DE Asparagine synthase, FT score 3.2e-132" FT CDS 145100..146041 FT /transl_table=11 FT /gene="wbmH" FT /locus_tag="BB0137" FT /product="nucleotide sugar epimerase/dehydratase" FT /db_xref="GOA:O87987" FT /db_xref="InterPro:IPR016040" FT /db_xref="PDB:2Q1W" FT /db_xref="UniProtKB/TrEMBL:O87987" FT /protein_id="CAE30638.1" FT /translation="MKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDH FT PNLTFVEGSIADHALVNQLIGDLQPDAVVHTAASYKDPDDWYNDTLTNCVGGSNVVQAA FT KKNNVGRFVYFQTALCYGVKPIQQPVRLDHPRNPANSSYAISKSANEDYLEYSGLDFVT FT FRLANVVGPRNVSGPLPIFFQRLSEGKKCFVTKARRDFVFVKDLARATVRAVDGVGHGA FT YHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGPDDAPSILLDPSRTIQDFGKIEF FT TPLKETVAAAVAYFREYGVSGGYTHLKINENK" FT misc_feature 145109..145996 FT /note="HMMPfam hit to PF01370, DE NAD dependent FT epimerase/dehydratase family, score 1.4e-15" FT CDS 146046..146978 FT /transl_table=11 FT /gene="wbmG" FT /locus_tag="BB0138" FT /product="nucleotide sugar epimerase/dehydratase" FT /db_xref="GOA:O87988" FT /db_xref="InterPro:IPR016040" FT /db_xref="PDB:2PZK" FT /db_xref="UniProtKB/TrEMBL:O87988" FT /protein_id="CAE30639.1" FT /translation="MRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVA FT GLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAAYKDPDDWAEDAATNVQGSINVAKAAS FT KAGVKRLLNFQTALCYGRPATVPIPIDSPTAPFTSYGISKTAGEAFLMMSDVPVVSLRL FT ANVTGPRLAIGPIPTFYKRLKAGQKCFCSDTVRDFLDMSDFLAIADLSLQEGRPTGVFN FT VSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGADDVPSVVLDPSKTETEFGWKAKVD FT FKDTITGQLAWYDKYGVTDIFSHLSAPKT" FT misc_feature 146052..146936 FT /note="HMMPfam hit to PF01370, DE NAD dependent FT epimerase/dehydratase family, score 5.4e-16" FT CDS 146983..148056 FT /transl_table=11 FT /gene="wbmF" FT /locus_tag="BB0139" FT /product="nucleotide sugar epimerase/dehydratase" FT /db_xref="GOA:O87989" FT /db_xref="InterPro:IPR016040" FT /db_xref="PDB:2PZJ" FT /db_xref="UniProtKB/TrEMBL:O87989" FT /protein_id="CAE30640.1" FT /translation="MPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDN FT LLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHE FT NNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSM FT SKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKA FT LKGMPLPLENGGVATRDFIFVEDVANGLIACAADGTPGGVYNIASGKETSIADLATKIN FT EITGNNTELDRLPKRPWDNSGKRFGSPEKARRELGFSADVSIDDGLRKTIEWTKANLAV FT IEQIMRKHDSALATYGK" FT misc_feature 147025..147996 FT /note="HMMPfam hit to PF01370, DE NAD dependent FT epimerase/dehydratase family, score 3.5e-34" FT CDS complement(148416..149597) FT /transl_table=11 FT /gene="wbmE" FT /locus_tag="BB0140" FT /product="putative exported protein" FT /db_xref="InterPro:IPR002931" FT /db_xref="UniProtKB/TrEMBL:O87990" FT /protein_id="CAE30641.1" FT /translation="MIRKSYIIGLLLTLLLGSGLGGYALQRATSATPAATDATAKPAAE FT PATREVEKSNESPPPAGLATPSGYDGGQLPCMQKESMERYACLVRTAGEGAANVTPGGK FT GEAAGASPLTQMFMVTEAMNLIRTLASSARYSWNQSTLGAGFIKPNMAQQEICLDGGFG FT ICGNHQYLFLELMHRLGLEARSVGFWYIDPNANSRASHAAAEVLVDKKWRYVDITWGSL FT WLAQRNDLLSAMSLDEVLAGKGHRFTGTTDVWYIAQRMAKYDPFIYLKGRDLQVTRDGG FT GLLQIKLADQAEKFAHMPNYVGTVPERATMEMQISSNHKHTELQVNISGMAGCKQSRLQ FT IGDEEFDIRPGTILTNTFQQQDRISVQGSDPHCYVVLSSIEPIRSAKRASAPN" FT misc_feature complement(148596..148628) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature complement(149520..149579) FT /note="1 probable transmembrane helix predicted for BB0140 FT by TMHMM2.0 at aa 7-26" FT misc_feature complement(149520..149597) FT /note="Signal peptide predicted for BB0140 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.366 between residues 26 and 27" FT CDS complement(149720..150742) FT /transl_table=11 FT /gene="wbmD" FT /locus_tag="BB0141" FT /product="putative membrane protein" FT /db_xref="UniProtKB/TrEMBL:O87991" FT /protein_id="CAE30642.1" FT /translation="MAALRPAHTDKAEDFAVESMHEFAERSEIGRGMKLPELTQSSRSA FT IVVATIVASGLLLLGLLTAPALEAQDNRSDQDSARASSRAIKTLAVDTAKLSCLTPALI FT QQIKSDLPNIADAYNECRAEITERTKDMQLDDLGHRVVFATIATNASAPFGSFSAYKLP FT DLLAAPSLTSDNYLLLLGNYLDALHVTPKRSQMRMLGFDGGATGNYAQGMITISGTSLL FT LDPTIGMVVKIGFDDLLSSRRAAARNFVIAYMHDDPGITAVMKRISNSVYNGLYKPSDL FT LYYFFSPEYFMAFNGIIPAGQLKNVHPPLLRFPTPGATSLARTQAQNQQAAPKPAATEN FT " FT misc_feature complement(150545..150613) FT /note="1 probable transmembrane helix predicted for BB0141 FT by TMHMM2.0 at aa 44-66" FT CDS complement(150818..152704) FT /transl_table=11 FT /gene="wbmC" FT /locus_tag="BB0142" FT /product="putative glutamine amidotransferase" FT /db_xref="GOA:Q7WR23" FT /db_xref="HSSP:1CT9" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/TrEMBL:Q7WR23" FT /protein_id="CAE30643.1" FT /translation="MCGVLGAWWRHHDEHEDARFAAGLRKLAHRGPDDRGSEHFAAPHG FT RLSLGHTRLAVIDLSAAGHQPMHADADRLAVVFNGEIYNYRELRSELRQIGAIFRGDSD FT TEVLLAAWQHWGVAALRRFKGMFAFALYDRRQQTLTLARDAFGIKPMYYHAAPERLLFG FT SELPAVQALLPHPPRLNWQRAYDYLAYGQYDQPPDTFIAGIRQLPAGHLLTLDLRTGRA FT GEPMAWDDPASQECRPIGFQEAAEELRARFLDNVRLHLRSDVPIGAALSGGIDSSAIVC FT AMRWLEPDLPIQTFSFISDDTHRSEERWVDLVNQHCGATGHKIHIAPHELLDDLDDLIR FT VQGEPVGSTSIYAQYRVFKLAREHGVVVTLDGQGADELLGGYGGYPTERLASLLETGRL FT GAAARLLRQQGRGAPARLLQAAALAAGGRHLANLRHATGRQHAPAWLDAQVLRDQGVTM FT REPAHAWAAATPLRGRRLVNELAHALYHRGLGALLRHGDRNSMRFSVESRVPFLTQDLA FT EFALSLPERYLVSDAGQTKHIFRKAMRGIVPDSILDRDDKIGFATPEQQWMQATAPQMR FT QWLVDAADIPFLRNAEVTAQFDAMIAGATPFSWQAWRWVNFQRWMQHATVLP" FT misc_feature complement(151034..152032) FT /note="HMMPfam hit to PF00733, DE Asparagine synthase, FT score 6.9e-12" FT misc_feature complement(151406..151438) FT /note="PS00626 Regulator of chromosome condensation (RCC1) FT signature 2." FT misc_feature complement(152243..152701) FT /note="HMMPfam hit to PF00310, DE Glutamine FT amidotransferases class-II, score 1.4e-19" FT misc_feature complement(152687..152704) FT /note="PS00443 Glutamine amidotransferases class-II active FT site." FT CDS 152766..153866 FT /transl_table=11 FT /gene="wbmB" FT /locus_tag="BB0143" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q7WR22" FT /protein_id="CAE30644.1" FT /translation="MSDAIMAGLFWLGDMRIAYLTFELPDTRTGVGKKILAQGNFWRAA FT GNQVRNFVLRAPAFPALDEVEFLCQRRPGGPMVAAMLSGARIGAALEAWRPDVIYARQM FT LWWPGALRALRAAPLIIEYNSIARNEYRSSSKLKYLLEITSSRYFPRQARGIVAVTPEL FT LATVPATQAEGIVIGNGYDFAKAVPRAAPDNARARLLLVGSPGQPWLGADKVARMAALM FT PEYDFDVVVPGLKLAGPPNLYCHGALFDADLAARYAATDVALGTLALHRKGMAQAAPLK FT TREYLAYGIPVVGGYDDPDLDGAAYWLNIGNAEDNIDRNIENIRNFVTQWRGRLPDRGD FT IESRLGFSGKECARLDFFERVRQHAG" FT CDS 153856..155073 FT /transl_table=11 FT /gene="wbmA" FT /locus_tag="BB0144" FT /product="putative glycosyl transferase" FT /db_xref="GOA:O87994" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:O87994" FT /protein_id="CAE30645.1" FT /translation="MPVRRIALITNGYPDIYARERSFILPELKALLAYGHQVTLVPVRE FT VTEVDPDLPDGVAVERRLAHLYRPWQLPATVLWMMFRGYFWREAWQCLGRGRLRYLGHF FT FKESVRATNTLRMQSALRDYDVLYTYWFKGESTGISLMPGTHARRLTRAHGYDLYEDRP FT NNEGYIPYREMTLPRLDRVVVLSEEARAYLEQRYPASVGRTVVSPLGVAHESDENPGPE FT ADRIVLVSCSYPTPNKRLPLIGQLAAAVACARPSVKVVWMHFGCRREEAGLPVDFAGPP FT NLSVQFAGEAPNEHIRRWYATRPVSFFVNLSQSEGQPVSIMEAMAFGIPVMATGVGGIP FT EMLRHGGGMTLPEQPDVNAVAREMLSLLDDPSRYQAMREAARETQLAYFNTSANHRTLA FT DLIGEF" FT misc_feature 154486..155007 FT /note="HMMPfam hit to PF00534, DE Glycosyl transferases FT group 1, score 3.4e-10" FT misc_feature 154579..154611 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(155091..156965) FT /transl_table=11 FT /gene="bplL" FT /gene_synonym="wlbL" FT /locus_tag="BB0145" FT /product="lipopolysaccharide biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) bplL" FT /db_xref="GOA:Q7WR21" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7WR21" FT /protein_id="CAE30646.1" FT /translation="MTLPYAIRRLFVDLPRPFKQMLAIVLDAVILLGAFHLALWLRFEL FT FFLTDQYLFLSLLACAGGIAALAAFGVYLYILRYMSERVLAAILGGIVVSVMVVTAGNT FT FLQLATISRGVLVLYAALALVGLIGVRLIARKLLFPADHHMADPRTPVLIYGAGGAGSQ FT LAMALRAGPHYRPVAMLDDDKRKHRLVVNGLRVYPPEQLPKLIDRHNIRQLLIAMPSAP FT PKQIRSIVEAAEPYRLRIRLVPSMRELIDPTNGVRLRDVQVEDLLGRDPVAPIDTLLGR FT CVTDRVVMVTGAGGSIGSELCRQILALRPRKLVLFEIAEPALYAIEQDLRQRIGERNIE FT IAGVLGSVRDAAHCLAQLQEHGVQTIYHAAAYKHVPIVEHNVSEGIRTNAFGTLNMAET FT AIQAGVLDFVLISTDKAVRPTNVMGASKRLAELILQAHAQIQDKTRFSMVRFGNVLGSS FT GSVVPLFRRQILEGGPITLTHPEITRYFMTIPEAAQLVLQAGAMGESGSVFVLDMGEPV FT LIRELAERMVRLYGLTVKNSDQPDGDIEIRITGLRPGEKLYEELLIGEDSRETLHPRIM FT RATEYSLPYETLMGQLRMLDRSLQMCSPRQAAELLGQIVREYASVTYA" FT misc_feature 155091..169763 FT /note="Lipopolysaccharide biosynthesis locus" FT misc_feature complement(155115..156701) FT /note="HMMPfam hit to PF02719, DE Polysaccharide FT biosynthesis protein, score 0" FT misc_feature complement(155436..155471) FT /note="PS00135 Serine proteases, trypsin family, serine FT active site." FT misc_feature complement(join(156453..156512,156570..156638, FT 156648..156716,156735..156803,156846..156905)) FT /note="5 probable transmembrane helices predicted for FT BB0145 by TMHMM2.0 at aa 21-40, 55-77, 84-106, 110-132 and FT 152-171" FT CDS complement(157014..158261) FT /transl_table=11 FT /gene="bplJ" FT /gene_synonym="bplK" FT /gene_synonym="wlbjK" FT /locus_tag="BB0146" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) bplJ" FT /db_xref="UniProtKB/TrEMBL:Q7WR20" FT /protein_id="CAE30647.1" FT /translation="MCAVALGFSGSSIYVLDPLRPFHFGAALILALIALDRQWRRAVLD FT SALTRWLAATAAVLLIQLLWVEHTDRYLRFLAFLLTGVCYTVLADALVRRRVDFAEGLY FT PIVLYWLITAAMPIYDAWTGSGRFRMSYPLTGGVWYNINDMATALVFANLIWLLIKRKL FT SFPLYLTCWFYALAMNRRTILLAASVLGLLYLLGYARRLKHGNRALLAGALLATSAAAL FT VLHHGNFQFGTLPSLAPRAQVGAGAVLTPASTAAADETIQSAQAGEDMPPVDEIGVIAN FT NGDHSTAYRVQLLLDMYAQIRDMPWWQWAFGLGLGQLNLMWPATDAQWASPHFFWLEMF FT FHLGLLWVAFLGWLLVRSDSTGRICLITAAIAGMAPSSMIYLQPFWFLVGVCVAVLPQK FT NGAPSRPAAFPQHASQ" FT misc_feature complement(join(157104..157172,157191..157259, FT 157287..157346,157569..157637,157665..157718, FT 157785..157853,157896..157964,157983..158051, FT 158064..158123,158157..158225)) FT /note="10 probable transmembrane helices predicted for FT BB0146 by TMHMM2.0 at aa 13-35, 47-66, 71-93, 100-122, FT 137-159, 182-199, 209-231, 306-325, 335-357 and 364-386" FT CDS complement(158311..159015) FT /transl_table=11 FT /gene="bplI" FT /gene_synonym="wlbI" FT /locus_tag="BB0147" FT /product="lipopolysaccharide biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) bplI" FT /db_xref="UniProtKB/TrEMBL:Q7WR19" FT /protein_id="CAE30648.1" FT /translation="MMTLLPLLVIASYSIIHLLEYLSYYARVAGRMAGKPVTGYAIQNA FT TTTVTRFFYLALMPLLGFLVDKQVPTSLYLQMGLAAMFGAALLSLLGYWLRYSWIALLT FT NAVRKRAGQPPLRVEEIRTALEAPASLPKKRIALLAAIVFLCYCLGVLLSYFFALVFHE FT YRSTISQLSGLINGVATVLLTFVLEPRIAGIVDARPTHDVYHAIQAMLNGRLIAIGLLA FT PALFFGVCIGFV" FT misc_feature complement(join(158317..158385,158446..158514, FT 158542..158610,158716..158784,158821..158877, FT 158938..159006)) FT /note="6 probable transmembrane helices predicted for FT BB0147 by TMHMM2.0 at aa 4-26, 47-65, 78-100, 136-158, FT 168-190 and 211-233" FT CDS complement(159012..160118) FT /transl_table=11 FT /gene="bplH" FT /gene_synonym="wlbH" FT /locus_tag="BB0148" FT /product="putative glycosyl transferase" FT /note="ortholog of Bordetella pertussis (BX470248) bplH" FT /db_xref="GOA:Q7WR18" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7WR18" FT /protein_id="CAE30649.1" FT /translation="MLGPARSIHTIRWANGLALRGLQVHLLSLETPDLSLYDERIVQYR FT LPWRAPLGYFLAAPRLRALLKRIDPDLLNVHYATGYGLLARRARFSPVLLSAWGSDIYE FT FPNSSTWHKALLQRNLDHATALAATSHAMQREMRGLTRRPIFVTPFGIDEALFQPAQSV FT QAPAADGPIVIGTVKALETHYGIDTLIQAFALLRQALAASQPGMAERLVLRIYGAGSQL FT QRLRAQAQAAHIANQVEFKGRIPHAEVPEALRALDVYVALSRMDSFGVAILEACSCALP FT VVVSNADGPAEVVVDGKTGYIVAREDAHAAADRLQELVLNPELRQRLGAAGRARVLSEY FT TWSKSLDMMLDAYTETARLYRATQPASV" FT misc_feature complement(159114..159650) FT /note="HMMPfam hit to PF00534, DE Glycosyl transferases FT group 1, score 3.7e-49" FT CDS complement(160380..160973) FT /transl_table=11 FT /gene="bplG" FT /gene_synonym="wlbG" FT /locus_tag="BB0149" FT /product="probable sugar transferase" FT /note="ortholog of Bordetella pertussis (BX470248) bplG" FT /db_xref="GOA:O87997" FT /db_xref="InterPro:IPR003362" FT /db_xref="UniProtKB/TrEMBL:O87997" FT /protein_id="CAE30650.1" FT /translation="MIKRLFDVVCSGLGLLALLPLLALIAIAIKLDSPGPVFFRQERVG FT KGGVPFRIHKLRSMSVRQDPQAGQITVGADPRITRVGKWIRKWKLDELVQLIDVFTGSM FT SLVGPRPEVPRYVVLYPDALRNLILSVRPGITDPASIRFRNENEILGQSSDPERTYREI FT ILPEKLRIQAEYVQTRTFLGDLKIIAHTLLAVAR" FT misc_feature complement(160386..160967) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02397, DE Bacterial sugar FT transferase, score 5.3e-15" FT misc_feature complement(160887..160955) FT /note="1 probable transmembrane helix predicted for BB0149 FT by TMHMM2.0 at aa 7-29" FT misc_feature complement(160890..160973) FT /note="Signal peptide predicted for BB0149 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.991) with cleavage site FT probability 0.704 between residues 28 and 29" FT CDS complement(160970..162202) FT /transl_table=11 FT /gene="bplF" FT /gene_synonym="wlbF" FT /locus_tag="BB0150" FT /product="lipopolysaccharide biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) bplF" FT /db_xref="GOA:Q7WR17" FT /db_xref="HSSP:1B9H" FT /db_xref="InterPro:IPR000653" FT /db_xref="UniProtKB/TrEMBL:Q7WR17" FT /protein_id="CAE30651.1" FT /translation="MPPAARLSLLQRSSTMSDFLPFALPDIGEAEIQAVTESMRSGWLT FT TGPNAREFEREFAAYMGADVEAVAVNSATAGLHLALEAIGVGPGDEVITTTHTFTASAE FT VARYLGAEPVLVDIDPATLCISPAAIERAITPRTRAIVPVHYGGLSCDMDSILEIARKH FT GLKVIEDAAHALPASWQGRRIGSLESDLTVYSFYATKTLATGEGGMVVTRDPALAKRCR FT VMRLHGIDRDAFDRFTSKKPAWYYEIVAPGFKYNMTDTAAAMGRVQLQRVQQMRDRRAQ FT IAAAYDQAFADLPLTLPPSPGRTPGVERAAHRDDDEHSWHLYAIRIHPQAPLKRDDFIV FT RMTENGIGCSVHYVPLHLQPYWRDRYGLTPDMYPHSQAAFEGMASLPIYSRMTDADVQR FT VIASVRQLLRP" FT misc_feature complement(160988..162130) FT /note="HMMPfam hit to PF01041, DE DegT/DnrJ/EryC1/StrS FT aminotransferase family, score 2.8e-201" FT CDS complement(162220..163479) FT /transl_table=11 FT /gene="bplE" FT /gene_synonym="wlbE" FT /locus_tag="BB0151" FT /product="probable glycosyl transferase" FT /note="ortholog of Bordetella pertussis (BX470248) bplE" FT /db_xref="GOA:Q7WR16" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7WR16" FT /protein_id="CAE30652.1" FT /translation="MNILLINHYAGSPRYGMEFRPYYFGREWIGHGHQVKVAASTISHI FT RARAPQAGGRLTRENVDGIEYLWYATLPYQGNGARRLLNMLQFSARLYGLRRDLGGWRP FT DIVIASSTHPYDVLPAARLARQTGARLVFEVHDLWPLTPRLLGGFKAWHPMIASMQYAE FT DYAYRHADLTVSMLPCALPYMRERGLDPRRYAHVPNGVPVAEYSSPDFDNPDYLRVRAQ FT IRQLREQCDFVLAYAGTHGHANALDMLLQAMARLRDQPIGLLLLGDGPDKPELKRLAGQ FT LGLRHIAFADPVPRPAVQAVMADIDAAYIGLRRSPLFQFGVSPNKLFDYMLSACPVVQS FT IESGNDIVADARCGVSVPAEDPAALAAALHGLRALPAAERQAMGRRGRDYVLARHDYPV FT LAQQFLDAVQSVTPRRAASR" FT misc_feature complement(162310..162828) FT /note="HMMPfam hit to PF00534, DE Glycosyl transferases FT group 1, score 2.6e-05" FT CDS complement(163503..164489) FT /transl_table=11 FT /gene="bplD" FT /gene_synonym="wlbD" FT /locus_tag="BB0152" FT /product="UDP-N-acetylglucosamine 2-epimerase" FT /note="ortholog of Bordetella pertussis (BX470248) bplD" FT /db_xref="GOA:Q7WR15" FT /db_xref="HSSP:1O6C" FT /db_xref="InterPro:IPR003331" FT /db_xref="UniProtKB/TrEMBL:Q7WR15" FT /protein_id="CAE30653.1" FT /translation="MVHTGQHFDANMSDVFFDELGMQTPAHQLDIHGGGHGDMTGRMLV FT ALEQVMQAEKPDVVLVYGDTNSTLAGALAAVKLHIPVAHVEAGLRSFNLRMPEEVNRIL FT TDRISRWLFTPTDSATRHLAAEGQSGEKVVQVGDVMYDVALHHGARVTAEGRALAAHGL FT KPGGYVLATIHRAENTDDAQRLTTIVRALQALAAERQVVWPLHPRTRGILARLGLLDEL FT ASTVTLLEPVGYLDMVQLEKYAALIATDSGGVQKEAFFHRIPCVTLRDETEWTELVDAG FT WNRLAPPVSSAVVAQAVQDALREQPRDVQPYGDGQAARRIVDALAAH" FT misc_feature complement(163512..164456) FT /note="HMMPfam hit to PF02350, DE UDP-N-acetylglucosamine FT 2-epimerase, score 1.2e-185" FT CDS complement(164599..165699) FT /transl_table=11 FT /gene="bplC" FT /gene_synonym="wlbC" FT /locus_tag="BB0153" FT /product="lipopolysaccharide biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) bplC" FT /db_xref="GOA:Q7WR14" FT /db_xref="HSSP:1B9H" FT /db_xref="InterPro:IPR000653" FT /db_xref="UniProtKB/TrEMBL:Q7WR14" FT /protein_id="CAE30654.1" FT /translation="MQFIDLKTQYQALRDTINPRIQAVLDHGQFIMGPEVKELEAALCA FT YTGAKHCITVASGTEALLISLMALGVKAGDEVITTSFTFVATAEVIALLGAKPVFVDVE FT PDTCNIKVSEIEAKITPRTKAIIPVSLYGQCGDMDEVNAVAARHGLPVIEDAAQSFGAT FT YKGRKSCNLSTIGCTSFFPSKPLGCYGDGGALFTNDDELAQAMREIRVHGQSGRYYHTR FT IGVGGRMDTLQCAVVLGKLERFDWEIAQRIKIGARYQQLLADLPGGACTVTVRPDRDSV FT WAQFTVMVPNREAVIAQLKEAGIPTAVHYPRPIHAQPAYEQYAEGAGATPVSDDLAARV FT MSLPMHPDLDEATQDKIVAALRQALN" FT misc_feature complement(164614..165669) FT /note="HMMPfam hit to PF01041, DE DegT/DnrJ/EryC1/StrS FT aminotransferase family, score 4.1e-180" FT CDS complement(165703..166278) FT /transl_table=11 FT /gene="bplB" FT /gene_synonym="wlbB" FT /locus_tag="BB0154" FT /product="probable acetyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) bplB" FT /db_xref="GOA:Q45377" FT /db_xref="HSSP:1LXA" FT /db_xref="InterPro:IPR018120" FT /db_xref="UniProtKB/TrEMBL:Q45377" FT /protein_id="CAE30655.1" FT /translation="MTTIHPTAIVDEGARIGANSRIWHWVHICGGAEIGAGCSLGQNVF FT VGNRVRIGDRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERKNEYRDTLVR FT QGATLGANCTIVCGATVGRYAFVGAGAVVNKDVPDFALVVGVPARQIGWMSRHGEQLDL FT PLAGNGQARCPHTGDLYILENGVCRLGE" FT misc_feature complement(165718..165744) FT /note="PS00572 Glycosyl hydrolases family 1 active site." FT misc_feature complement(165910..165963) FT /note="HMMPfam hit to PF00132, DE Bacterial transferase FT hexapeptide (four repeats), score 0.47" FT misc_feature complement(166081..166134) FT /note="HMMPfam hit to PF00132, DE Bacterial transferase FT hexapeptide (four repeats), score 0.55" FT misc_feature complement(166135..166188) FT /note="HMMPfam hit to PF00132, DE Bacterial transferase FT hexapeptide (four repeats), score 0.14" FT misc_feature complement(166189..166242) FT /note="HMMPfam hit to PF00132, DE Bacterial transferase FT hexapeptide (four repeats), score 0.25" FT CDS complement(166282..167334) FT /transl_table=11 FT /gene="bplA" FT /gene_synonym="wlbA" FT /locus_tag="BB0155" FT /product="probable oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) bplA" FT /db_xref="GOA:Q45376" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q45376" FT /protein_id="CAE30656.1" FT /translation="MSSLPITDRKIRFGLVGCGRISKNHIGAIAQHGDRAELVEICDTN FT PEALQAAEAATGARPFSSLSDMLAQGNADALVLATPSGLHPWQAIEVAQAGRHVVSEKP FT MATRWEDGKRMVKACDEAGVRLFVVKQNRRNATLQLVKKAIEQGRFGRIYMVTVNVFWT FT RPQEYYDAARWRGKWEWDGGAFMNQASHYVDLLDWLVGPVESVYAYTATLARRIEAEDT FT GVAALRWRHGAMGSINVTMLTYPQNLEGSITILGEKGTVRVGGVAVNRIDEWKFAEPHP FT DDDKIREANYETTSVYGFGHPLYYDNVINCLRGDCEPETDGREGLQSLALLTAIYRSAR FT DGVRIPLPLD" FT misc_feature complement(166564..166911) FT /note="HMMPfam hit to PF02894, DE Oxidoreductase family, FT C-terminal alpha/beta domain, score 1.2e-28" FT misc_feature complement(166945..167304) FT /note="HMMPfam hit to PF01408, DE Oxidoreductase family, FT NAD-binding Rossmann fold, score 7.9e-46" FT CDS 167510..168472 FT /transl_table=11 FT /gene="rfaC" FT /gene_synonym="waaC" FT /locus_tag="BB0156" FT /product="probable heptosyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0094" FT /db_xref="GOA:Q7WR13" FT /db_xref="InterPro:IPR011908" FT /db_xref="UniProtKB/TrEMBL:Q7WR13" FT /protein_id="CAE30657.1" FT /translation="MVHMLPAISDIARYVPDTQIDWVAEEAFADIPKWHPAVNEVIKVA FT HRRWRKAWWSEPVRQERRALAERLRSVSYDVVLDMQGLLKSAWLVRQTRGVRHGLDWRS FT AREPLASLFYNVRHRVEFWQPAVVRQRKLAALTFGYNYAGSPDFGLQAFGRAAQADDAP FT ADPGRRMLHLAADRGYAVIMPSASRDDKLWPEDDWRAVFRRLQDAGCALRLLAGNEQEA FT ERARVLVAGMEGVEVLPRMDLTSVAQVLAGARLMVGLDSGLTHLSAALGRPTIGIYRAS FT TPVRTPLVGPSYTASLGDRGASPSREAVLASVEQALAAA" FT misc_feature 167693..168451 FT /note="HMMPfam hit to PF01075, DE Glycosyltransferase FT family 9 (heptosyltransferase), score 5.9e-110" FT CDS 168474..169766 FT /transl_table=11 FT /gene="kdtA" FT /gene_synonym="waaA" FT /locus_tag="BB0157" FT /product="3-deoxy-D-manno-octulosonic-acid transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0095" FT /db_xref="GOA:Q7WR12" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7WR12" FT /protein_id="CAE30658.1" FT /translation="MGRGVYTLALRGLAPLIWLWMWRRARRAGGQWELFAPARFGRAGA FT RAPAPLAAPVWVHAVSLGETRAAQPLVQALLERGLPVLLTHTTATGRAEGERLFGAAIG FT RGQLQQAWLPYDFPGATRRFLARHAPRCGLLIEREVWPNLLAAARAQGVPMALVSARFS FT ASSLRQAGWLGQALREALAGLGRVLAQTDEDGARLCQAGANAYTVTGSLKFDVALPEAQ FT LRVGHAWAGATGRPVIALASTREGEDAMFIEAIGALQAHRAATPRPLILLIPRHPQRFD FT EAAAQLQAAGLAYARRSAGSGEPGPHIDVLLGDTLGEMPFYYAAADVAIVGGSFARLGG FT QNLIEACAAGTPVIVGPHTFNFKDAARDAIAAGAALRAPDARTALDWALQLLAEPARRQ FT AMSEAARAWTAAHAGATRRTLDALEDWLAPR" FT CDS complement(169792..170628) FT /transl_table=11 FT /locus_tag="BB0158" FT /product="putative exported protein" FT /db_xref="UniProtKB/TrEMBL:Q7WR11" FT /protein_id="CAE30659.1" FT /translation="MKIKQLVTQTLLVCTVSAVTSTAVIYLSKKIDARRQTAAQIVDAR FT ERALLHEFASKVTNFEEFRFGYGPGRLSSPCLDKAVEQIRDAGGDVRGAFAECKSSFAA FT KLPVARKGMSEGDLLAAFIAVVVNRLAPYGSSTASTPAEILAAKTLNCSQHSIMTAALI FT ARYVPDAEVIEKVGLDGGHIGNHALVYYQSKTARMVLDGTSAMITFASIDDILAGKLVS FT TYDIYDFFQSTDESLEIFRRNVRGAYRLGAVRPEHVIYRESVPLLAKPAPLQANPS" FT misc_feature complement(170560..170628) FT /note="Signal peptide predicted for BB0158 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.958) with cleavage site FT probability 0.510 between residues 23 and 24" FT CDS complement(170799..170954) FT /transl_table=11 FT /locus_tag="BB0159" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0096" FT /note="Previously sequenced as Bordetella bronchiseptica FT putative secreted protein Bblps1.35C SWALL:O88004 FT (EMBL:AJ007747) (51 aa) fasta scores: E(): 5.1e-20, 100% id FT in 51 aa" FT /db_xref="UniProtKB/TrEMBL:O88004" FT /protein_id="CAE30660.1" FT /translation="MRILFLLIVAANLWVYALGQGWLGLRPADEGRDAARLNQEMKADQ FT VKVLRP" FT misc_feature complement(170880..170948) FT /note="1 probable transmembrane helix predicted for BB0159 FT by TMHMM2.0 at aa 3-25" FT misc_feature complement(170898..170954) FT /note="Signal peptide predicted for BB0159 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.879) with cleavage site FT probability 0.698 between residues 19 and 20" FT CDS complement(170980..171783) FT /transl_table=11 FT /gene="baf" FT /locus_tag="BB0160" FT /product="Bvg accessory factor" FT /note="ortholog of Bordetella pertussis (BX470248) BP0097" FT /db_xref="GOA:O88005" FT /db_xref="InterPro:IPR004619" FT /db_xref="UniProtKB/Swiss-Prot:O88005" FT /protein_id="CAE30661.1" FT /translation="MIILIDSGNSRLKVGWFDPDAPQAAREPAPVAFDNLDLDALGRWL FT ATLPRRPQRALGVNVAGLARGQAIAATLRAGGCDIRWLRAQPLAMGLRNGYRNPDQLGA FT DRWACMVGVLARQPSVHPPLLVASFGTATTLDTIGPDNVFPGGLILPGPAMMRGALAHG FT TAHLPLADGLVADYPIDTHQAIASGIAAAQAGAIVRQWLAGRQRYGQAPEIYVAGGGWP FT EVRQEAERLLAVTGAAFGATPRPTYLDSPVLDGLAALAAHGAPTA" FT misc_feature complement(171175..171780) FT /note="HMMPfam hit to PF03309, DE Bordetella pertussis Bvg FT accessory factor family, score 3.3e-83" FT CDS complement(171780..172622) FT /transl_table=11 FT /gene="birA" FT /locus_tag="BB0161" FT /product="putative biotin protein ligase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0098" FT /db_xref="GOA:Q7WR10" FT /db_xref="HSSP:1BIA" FT /db_xref="InterPro:IPR004408" FT /db_xref="UniProtKB/TrEMBL:Q7WR10" FT /protein_id="CAE30662.1" FT /translation="MSAEVRSLSLPEPAALARAIAARLPAFRDISWVGSTGSTNADLLA FT RARAGGGARPCLLGAHLQESGRGRAGRPWQNRVGAALMFSCAFDVDLPPSQLPALSPLA FT GMAACEALRQLVGQPAGLLVKWPNDVQWHDAKLAGVLVESVRNPAGTGHAVVIGMGLNL FT HGGDALSQALQRSVADWNDVAGPGEKGPDAAADLVATVARAWQDAAHTLQQEGFGAFGA FT RFARVDALAGRPVNVIDRGEILYTGAASGVDDHGRLLVQAADGMRPVSVGEISIRPQA" FT misc_feature complement(171792..171935) FT /note="HMMPfam hit to PF02237, DE Biotin protein ligase C FT terminal domain, score 2.8e-15" FT misc_feature complement(172098..172541) FT /note="HMMPfam hit to PF03099, DE Biotin/lipoate A/B FT protein ligase family, score 2e-29" FT misc_feature complement(172296..172328) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 172715..173851 FT /transl_table=11 FT /locus_tag="BB0163" FT /product="putative integral membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0099" FT /db_xref="InterPro:IPR003453" FT /db_xref="UniProtKB/TrEMBL:Q7WR09" FT /protein_id="CAE30663.1" FT /translation="MPMPSLPSTAGAATLPLTLDHGVCHVSGDWSMQALAAPGEVERRR FT AALARVDPDQRWDLRGVERLDTIGAHLLWGAWGQQLPERVRWSDGQREVFQTLQRNRGE FT ALPAPAPADRWGWLRAIGDAVFDAGRNGRALIIMFGQLVLDLGAFLRRPSRGPWREISA FT QVYRTGAQALGITALVGFLIGVVLSYLSAQQLQMFGADRFIVRLLGVSIVRELGPVLAA FT ILVAGRSGSAITAQIGVMRVTQELDAMLVMGISHGQRLILPRVIALAITMPLLVVWTDA FT MALLGGMLAAQMQLGVSAQWFLTSLPDAISLTNYWIGMFKGVSFGVLIALVACHFGLCI FT QPNTESLGRGTTTSVVTSITGVILVDALYAVIFSSIGI" FT misc_feature 172715..172822 FT /note="Signal peptide predicted for BB0163 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.737) with cleavage site FT probability 0.723 between residues 36 and 37" FT misc_feature 173096..173836 FT /note="HMMPfam hit to PF02405, DE Domain of unknown FT function DUF140, score 2.2e-58" FT misc_feature join(173222..173290,173534..173602,173660..173728, FT 173765..173833) FT /note="4 probable transmembrane helices predicted for FT BB0163 by TMHMM2.0 at aa 170-192, 274-296, 316-338 and FT 351-373" FT CDS 173851..174690 FT /transl_table=11 FT /locus_tag="BB0164" FT /product="probable ATP-binding component of ABC FT transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP0100" FT /db_xref="GOA:Q7WR08" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WR08" FT /protein_id="CAE30664.1" FT /translation="MGSVAQQNLFSATDLAVAPVIAVRGLRTAFGDHVVHDNLDLSVYP FT GEILALVGGSGTGKTVLLRQIIGLERPAAGTIEVLGRRVQELEPAERRRLSHRWGMLFQ FT AGALFSSLSVFDNVALPLRELRTVPEDLVCDVVMCRLAMVGLTSKDADKRPADLSGGMV FT KRVALARALSLDPELLFLDEPTAGLDPLRSDEFVDLVRSLHRQLGFTVVMVTHDLDTLL FT ALATRVAVLADKRVIVCDTVREVLKVDHPFIRSFFLGERGRRALGDLAPKETGNGKP" FT misc_feature 173986..174552 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 3.8e-57" FT misc_feature 174007..174030 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 174067..174120 FT /note="PS00216 Sugar transport proteins signature 1." FT CDS 174677..175624 FT /transl_table=11 FT /locus_tag="BB0165" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0101" FT /db_xref="InterPro:IPR003399" FT /db_xref="UniProtKB/TrEMBL:Q7WR07" FT /protein_id="CAE30665.1" FT /translation="MENRSHALLAGLFTLALLVAAALVAIWVGRDRAALKPYVIVSATS FT VSGLSAQSTVRYQGVPVGKVQSLGFNPDKPAQVRISIGVAPDTPITESTWAELGVQGVT FT GLGNIELRDDGTSTRRLASSAAMPATIPLRPGFFQRFEQRGGEILHNVEQVSARLERLL FT SNENVQATTATLQNIAAITTDLRQAATELRPALAQVPPLVDSLQAMSRNTGQAAQEIAG FT LAQAARQALARLDAPDGPLAMATRSMRDIAWAAARLDAQTLPAVSGMASSIDSAARSAT FT TTLRRVGDTPQSLLFGPPPTVPGPGEPGFAGFGR" FT misc_feature 174677..174751 FT /note="Signal peptide predicted for BB0165 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.352 between residues 25 and 26" FT misc_feature 174704..175108 FT /note="HMMPfam hit to PF02470, DE mce related protein, FT score 0.00031" FT CDS 175625..176230 FT /transl_table=11 FT /locus_tag="BB0166" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0101A" FT /db_xref="InterPro:IPR005586" FT /db_xref="UniProtKB/TrEMBL:Q7WR06" FT /protein_id="CAE30666.1" FT /translation="MDMKKAIIVLSALLLAGCGAGRMAAPPALFDLGADVAATPALPAR FT QPIVLAFEAVPYLSDTGVIWRVGDSASPHAYARSRWASAPAELVRQRLVERLSHQGPVL FT GAGMGAGLAQVQVTLTRFEQVFAADGQASVGHVAMQAVLLQDRQVVGQVRIAREAPAAT FT QDAAGGVQALRQATDAAADELAGWLAGRVAAAGVRAGS" FT misc_feature 175625..175696 FT /note="Signal peptide predicted for BB0166 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.988 between residues 24 and 25" FT misc_feature 175643..175702 FT /note="1 probable transmembrane helix predicted for BB0166 FT by TMHMM2.0 at aa 7-26" FT misc_feature 175646..175678 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 176260..176913 FT /transl_table=11 FT /locus_tag="BB0167" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0101B" FT /db_xref="UniProtKB/TrEMBL:Q7WR05" FT /protein_id="CAE30667.1" FT /translation="MSARTETQVFTGAAGNIDCAIDWPAHAPRGWALVLHPHSLQGGAR FT DNKVVTTVARACVQHGLAAVRPNFRGVGESAGEFDKSIGETEDMLALVAQVRERYPEFA FT ASPWVLGGFSFGTAVAAQTYAALAAAGDPSLPRALMLMGPAVNRFERSATEVPADTLLV FT HGEADDVVPLAEALEWARPRSLPVVVVPGASHFFHGKLLVLRQLVQDRLRIALD" FT CDS 177046..178302 FT /transl_table=11 FT /locus_tag="BB0168" FT /product="putative penicillin-binding protein precursor" FT /EC_number="3.4.16.4" FT /note="ortholog of Bordetella pertussis (BX470248) BP0102" FT /db_xref="GOA:Q7WR04" FT /db_xref="HSSP:1HD8" FT /db_xref="InterPro:IPR018044" FT /db_xref="UniProtKB/TrEMBL:Q7WR04" FT /protein_id="CAE30668.1" FT /translation="MKTLPDTAIAPVVLSRRVLASAVLAAMLAAAAPAGAQQQAAPATP FT VAAAAPAAGGAVGAVGDLAAVPVPTIAAKAWITVDVNSGQVLAASNADMKVEPASLTKI FT MTAYVVFNALQEKRLTLEQQVPVSEHAWRTGGSRMFIEPRKPVTVDELNQGMIVQSGND FT ASVALAEAVGGSESAFAALMNQEAQRLGMRNTHFMNSTGLPDPQHVTTARDLATLAAHL FT ISDYPDYYHYYKQKSYTYNKITQPNRNRLLWADPSVDGMKTGHTDSAGYCLVSTAMRGD FT RRILTVLVGADSEATRAEESLKLLNWSFQNFDTVKLYDQSQPGLDARVWEGKVENVKLG FT PPNPVWLAVPRGKAAEIKPVAQRTDPLVAPLTKGQQVGTLQLTLDGKTLRVEPLVVQED FT VERAGFFGRMADTVKRWFQ" FT misc_feature 177046..177153 FT /note="Signal peptide predicted for BB0168 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.908 between residues 36 and 37" FT misc_feature 177220..177987 FT /note="HMMPfam hit to PF00768, DE D-alanyl-D-alanine FT carboxypeptidase, score 4.2e-110" FT CDS 178305..179249 FT /transl_table=11 FT /locus_tag="BB0169" FT /product="probable class IV aminotransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0103" FT /db_xref="GOA:Q7WR03" FT /db_xref="HSSP:1DAA" FT /db_xref="InterPro:IPR000111" FT /db_xref="UniProtKB/TrEMBL:Q7WR03" FT /protein_id="CAE30669.1" FT /translation="MKAAPQAARRHRRAAMPAPILSKELPMIPGMPGDSQVYLNGEFTR FT LDEAKISVLDRGFIFGDGIYEVVPVYDGKVFRMTEHLNRLDRSLAALRIAAPMDRAGWE FT SVIAGLIARSAQPTCIIYLQVTRGVCKRDHAFPTEPITPTVFGMAAAFSPPGAAQRTQG FT LSAIAIDDERWLHCEIKSVSLLGNVLAKQQAVDAGVDEVVQFRDGWLTEGSSTNIWVVS FT GGKLLAPPKNNLILEGIRYGLMGELAEAAGLPFEARRISREEVLAADELMLTSATKEVL FT PIVRLDGKAVGAGKPGPVYEQLRAGYDARIAAL" FT misc_feature 178422..179228 FT /note="HMMPfam hit to PF01063, DE Aminotransferase class FT IV, score 7.7e-53" FT CDS 179325..179600 FT /transl_table=11 FT /locus_tag="BB0170" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0104" FT /db_xref="InterPro:IPR007454" FT /db_xref="UniProtKB/Swiss-Prot:Q7WR02" FT /protein_id="CAE30670.1" FT /translation="MHNIPPEESLIEYPSDFPIKVMGKQHPEFAQTLTEVVLQFDPAFD FT PASVEMRPSKGGNYMGLTFTVRATSREQLDSLYRALHGHPMVSIVL" FT CDS 179608..180270 FT /transl_table=11 FT /gene="lipB" FT /locus_tag="BB0171" FT /product="lipoate-protein ligase B" FT /EC_number="6.-.-.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0105" FT /db_xref="GOA:Q7WR01" FT /db_xref="InterPro:IPR000544" FT /db_xref="UniProtKB/Swiss-Prot:Q7WR01" FT /protein_id="CAE30671.1" FT /translation="MIKWLARPADYGSVWDAMKAFTAARGPGTADEIWLCEHAPVYTLG FT QAGRPEHLLNPGLIPVVHCDRGGQVTYHGPGQVLAYTLFDLRRAGLYVREYVDMLEQAT FT LATLRELGLEQACRKPGAPGIYVPQPGGELAKIAALGVKVRNGYAYHGLALNIDMDLSP FT FLGINPCGYEGLRTVDLAACGVRTSVERAGELLAAQLARAHGQAVQQRAAALAGVPG" FT misc_feature 179725..180096 FT /note="HMMPfam hit to PF03099, DE Biotin/lipoate A/B FT protein ligase family, score 1.5e-31" FT misc_feature 179803..179850 FT /note="PS01313 Lipoate-protein ligase B signature." FT CDS 180332..181333 FT /transl_table=11 FT /gene="lipA" FT /gene_synonym="lip" FT /locus_tag="BB0172" FT /product="lipoic acid synthetase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0106" FT /db_xref="GOA:Q7WR00" FT /db_xref="InterPro:IPR007197" FT /db_xref="UniProtKB/Swiss-Prot:Q7WR00" FT /protein_id="CAE30672.1" FT /translation="MSTLVESPVPSNDSQAAAPAAYDPTQKQKSQAKTARIPIKVVAAE FT KLKKPEWIRVRAAAPGSRFYDIKRILREHNLHTVCEEASCPNIGECFGKGTATFMIMGD FT KCTRRCPFCDVGHGRPDPLDTQEPENLARTIAALKLSYVVITSVDRDDLRDGGAAHFVE FT CIAKVREYSPDTRIEVLVPDFRGRLDRALHILNSGPPDVMNHNLETVPRLYKQARPGSD FT YAHSLKLLAEFKKLHPEVPTKSGLMLGLGETDEEILQVMRDMREHNVDMLTIGQYLQPS FT EHHLPVLRYVHPDTFAMFEREAYAMGFTHAAVGAMVRSSYHADQQAHAAGVN" FT misc_feature 180542..181309 FT /note="HMMPfam hit to PF02546, , score 1.1e-175" FT CDS complement(181348..181896) FT /transl_table=11 FT /gene="rfbC" FT /gene_synonym="rmlC" FT /locus_tag="BB0173" FT /product="dTDP-4-dehydrorhamnose 3,5-epimerase" FT /EC_number="5.1.3.13" FT /note="ortholog of Bordetella pertussis (BX470248) BP0107" FT /db_xref="GOA:Q7WQZ9" FT /db_xref="HSSP:1DZR" FT /db_xref="InterPro:IPR014710" FT /db_xref="UniProtKB/TrEMBL:Q7WQZ9" FT /protein_id="CAE30673.1" FT /translation="MKLTPLAIADVVLIEPQVFGDERGCFFESFNQDRLDAQLGRRIRF FT VQDNHSCSRAGVLRGLHYQILHPQAKLVRVVAGEAYDVAVDLRRGSPTFGRWTGAYLSA FT RNRHQLWIPEGFAHGFLALSDDTECLYKATDYYAPEHERCVRWDDPQLKVDWPLQGQAP FT ILSVKDRQGVALARADTYA" FT misc_feature complement(181363..181890) FT /note="HMMPfam hit to PF00908, DE dTDP-4-dehydrorhamnose FT 3,5-epimerase, score 2.6e-106" FT CDS complement(181954..182850) FT /transl_table=11 FT /gene="rfbD" FT /gene_synonym="rmlD" FT /locus_tag="BB0174" FT /product="dTDP-4-dehydrorhamnose reductase" FT /EC_number="1.1.1.133" FT /note="ortholog of Bordetella pertussis (BX470248) BP0108" FT /db_xref="GOA:Q7WQZ8" FT /db_xref="HSSP:1KBZ" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7WQZ8" FT /protein_id="CAE30674.1" FT /translation="MNILLLGRTGQIGDALLAHPPAWARLAALERRQADLRDLGRLAAV FT LDAYAPRILINAAAYTEVDRAEAEPELALRINAQAVAVMADYARRNNALLVHYSTDYVF FT DGKRARAYRETDAAHPLNAYGRSKLAGEQAIAASGCPHLILRTSWVYASHGANFVKTIL FT RLARTRAELSVVADQHGAPTWAGRIATVTWQAIDAHRRRRLPDGLWHLSAGGHVSWHGL FT ACHIVARARRAGLALSLDPAHIRPVTTAQYPLPAPRPANSRLDCGALRDALEPELPDWQ FT VDLDAVVDALAARAHTL" FT CDS complement(182847..183908) FT /transl_table=11 FT /gene="rfbB" FT /gene_synonym="rmlB" FT /locus_tag="BB0175" FT /product="dTDP-glucose 4,6-dehydratase" FT /EC_number="4.2.1.46" FT /note="ortholog of Bordetella pertussis (BX470248) BP0109" FT /db_xref="GOA:Q7WQZ7" FT /db_xref="HSSP:1KEW" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7WQZ7" FT /protein_id="CAE30675.1" FT /translation="MSILVTGGAGFIGSNFVLGWLASGDEPVINLDLLTYAGNAANLAA FT LRDDPRHLLVHGDIADAPLVRRLLREHRPRAIVNFAAESHVDRAIRAPDAFVQTNVVGT FT FALLEAARAYCAEQDDAAAAAFRFLHVSTDEVYGSLAPQAAPFTETHPYQPNNPYSASK FT AASDHMVRSYRHTYGLPAITTHCCNNYGPRQFPEKLIPLVIHHALAGRALPLYGDGMHV FT RDWLYVADHCAALECVLRDGQPGRTYNIGAHCERTNLEVVHAVCALLDQWRARPDGQPH FT ASGIAFIPERPGHDRRYAIDAGKIQRELGWRAATSFEAGLRETVRWYLNHPQWVADIAS FT GAYRHWLDTHYDT" FT misc_feature complement(182913..183902) FT /note="HMMPfam hit to PF01370, DE NAD dependent FT epimerase/dehydratase family, score 5.3e-160" FT misc_feature complement(183387..183473) FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT CDS complement(183944..184504) FT /transl_table=11 FT /locus_tag="BB0176" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3090" FT /db_xref="GOA:Q7WQZ6" FT /db_xref="InterPro:IPR017858" FT /db_xref="UniProtKB/TrEMBL:Q7WQZ6" FT /protein_id="CAE30676.1" FT /translation="MANRLSVIATRTGDDGSTGLGDGSRVGKDTARIAALGDVDELNSV FT LGLLRAETLPAEMDADLSTIQHDLFDMGAELCIPGHIALADEQVAHLDARLAHYNAGLA FT PLREFILPGGSRAAALCHLGRTVARRAERSVVALARAEVVNAPVRQYLNRLSDLLFVLA FT RHVNQAQGARDVYWASRHARPAD" FT misc_feature complement(184001..184483) FT /note="HMMPfam hit to PF01923, DE Protein of unknown FT function DUF80, score 6.1e-62" FT CDS 184927..185232 FT /transl_table=11 FT /locus_tag="BB0177" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3088" FT /db_xref="UniProtKB/TrEMBL:Q7WQZ5" FT /protein_id="CAE30677.1" FT /translation="MAFSRKYSSRMAVATAMAVVSLATPLAFAQQADATGEVRRVDAAA FT GKVSIKHDAISALDLPAMTLVYQIDPALLAGIKPGDKVRFTATRKDGRYVVTAISK" FT misc_feature 184927..185013 FT /note="Signal peptide predicted for BB0177 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.982 between residues 29 and 30" FT CDS complement(185275..186609) FT /transl_table=11 FT /gene="hslU" FT /gene_synonym="htpI" FT /locus_tag="BB0178" FT /product="ATP-dependent Hsl protease ATP-binding subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP3087" FT /db_xref="GOA:Q7WQZ4" FT /db_xref="HSSP:1G41" FT /db_xref="InterPro:IPR004491" FT /db_xref="UniProtKB/Swiss-Prot:Q7WQZ4" FT /protein_id="CAE30678.1" FT /translation="MSANHMTPGEIVSELDKFIIGQNRAKRAVAVALRNRWRRQQVAEP FT LRHEIHPKNILMIGPTGVGKTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRD FT LTEYSIKQTRELEMRRVRSHAEDAAEDRILDALVPPPRGASGEPERGEDNSARQTFRKR FT LREGKIDDLEIEIEIAQPMPQMDVMTPPGMEEMAEQLRGMFAGLARDKKKSKKIKVREA FT FKLIVEEEAAKRVNEDDLRAAAITNVEQNGIVFLDEIDKIAARQETGGADVSRQGVQRD FT LLPLVEGTTVNTRYGMVRTDHILFIASGAFHLARPSDLIPELQGRFPIRVELDSLSAED FT FVNILSETDASLIKQYTALLGTEDVKLEFTDDGIRRLAELAFSVNERTENIGARRLYTV FT MEKLLEELSFDASANSGEVITIDAAYVDLQLAETAGSQDLARYVL" FT misc_feature complement(185449..186450) FT /note="HMMPfam hit to PF00004, DE ATPase family associated FT with various cellular activities (AAA), score 9.8e-06" FT misc_feature complement(186412..186435) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(186631..187170) FT /transl_table=11 FT /gene="hslV" FT /gene_synonym="htpO" FT /locus_tag="BB0179" FT /product="ATP-dependent protease heat shock protein" FT /EC_number="3.4.25.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3086" FT /db_xref="GOA:Q7WQZ3" FT /db_xref="InterPro:IPR001353" FT /db_xref="UniProtKB/Swiss-Prot:Q7WQZ3" FT /protein_id="CAE30679.1" FT /translation="MEQFHATTIVCVRRGNHVALGGDGQVTLGNIVIKGTARKIRRLYH FT DKVLAGFAGATADAFTLQERFEAKLEKHQGHLMRAAVELTRDWRTDRVLRRLEAMLIVA FT DTEHTLVLTGNGDVLEPEHGLAAIGSGGAYAQSAALALLRNTELPPEAIVKQSLEIAGD FT LCIYTNQNHVIETLGA" FT CDS complement(187318..187782) FT /transl_table=11 FT /gene="dksA" FT /locus_tag="BB0180" FT /product="putative dnaK suppressor protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3085" FT /db_xref="GOA:Q7WQZ2" FT /db_xref="InterPro:IPR020458" FT /db_xref="UniProtKB/TrEMBL:Q7WQZ2" FT /protein_id="CAE30680.1" FT /translation="MATKAATKKSSKSTSDTAIDLPSEQELLAMPEADYMNDRQLAFFK FT ERLKQLEQDILANAGETTEHLRETQFVPDPADRATIEEEHALELRTRDRERKLLKKVQQ FT AIARIDSGEYGWCEETGEPIGVPRLLARPTATLSLEAQERREMRQKLYGD" FT misc_feature complement(187336..187548) FT /note="HMMPfam hit to PF01258, DE Prokaryotic dksA/traR FT C4-type zinc finger, score 5.4e-09" FT CDS complement(187926..189035) FT /transl_table=11 FT /locus_tag="BB0181" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3084" FT /db_xref="InterPro:IPR011629" FT /db_xref="UniProtKB/TrEMBL:Q7WQZ1" FT /protein_id="CAE30681.1" FT /translation="MNTARSLDKMVPVTILTGFLGAGKTTLLKRILTEYHGRRVAVIEN FT EFGPESIDNDLLVQDRDEEIIELSNGCVCCTVRGDLMRTLSDLRARREAGELSFERVII FT ETTGMANPGPVCQTFFMDDDIAEYYRLDAVVTVVDAKHGMATLDAQDEAQKQVGFADRI FT LVSKKDLVNDVDYAALHQRLVRINPRAPITPVHFGEADLKSIIDISGFNLNSILDIDPA FT FLADEHPDAAHDHHDHDHGHGHEHDHDHEGECGAHCNHHHHHHHAHHDDEIGAFVFRSN FT KPFDPARLEEFLGGVVQVYGPDLLRYKGILYMKGINRRMLFQGVHMMMGAEPGKAWTAA FT EKPSTKMVFIGRKLPQEIFTRGLEQCLVG" FT misc_feature complement(187932..187940) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="PS00294 Prenyl group binding site (CAAX box)." FT misc_feature complement(187935..189008) FT /note="HMMPfam hit to PF02492, DE Cobalamin synthesis FT protein/P47K, score 3.4e-133" FT misc_feature complement(188961..188984) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(189312..189815) FT /transl_table=11 FT /locus_tag="BB0182" FT /product="putative regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3083" FT /db_xref="GOA:Q7WQZ0" FT /db_xref="InterPro:IPR002481" FT /db_xref="UniProtKB/TrEMBL:Q7WQZ0" FT /protein_id="CAE30682.1" FT /translation="MSASRPTRADTVGAQLDLAESLCTQRGRRLTPIRRKVLELLLVHG FT RSLKAYELLEAMRAEHPGAAPPTVYRALDFLMDEGLIHRLDAVNAWSACHDAAGEPHDL FT LVVCTGCGAVAEISDPDMSRQLAERVARTGFALATHETEIRALCPQCQQNRPAQAHGHT FT HSHH" FT misc_feature complement(189381..189743) FT /note="HMMPfam hit to PF01475, DE Ferric uptake regulator FT family, score 1.6e-11" FT CDS 190144..190866 FT /transl_table=11 FT /locus_tag="BB0183" FT /product="putative transport protein ATP-binding" FT /note="ortholog of Bordetella pertussis (BX470248) BP3082" FT /db_xref="GOA:Q7WQY9" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WQY9" FT /protein_id="CAE30683.1" FT /translation="MAMTAPCIALRGAAFGWHGRPAVHGLTGEFSRGSMTAIVGPNGAG FT KSTLLKGLAGVLRPLAGALECEADLRRRLAWLPQASELERGFPITVADMVALGAWGRVG FT AWRRFDAAETARVHAALRRVGLQDLAGQSLGALSGGQMQRALFARLLLQDAPLLLLDEP FT FSAIDAATTDVLLDLLREQHAEGRTVIAVLHDLDMVRRHFPRTLLLAGRQVAWGETGQA FT LGDANLARARGLAMREAA" FT misc_feature 190240..190779 FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 5.7e-46" FT misc_feature 190261..190284 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 190552..190596 FT /note="PS00211 ABC transporters family signature." FT CDS 190863..191759 FT /transl_table=11 FT /locus_tag="BB0184" FT /product="putative ABC transporter permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3081" FT /db_xref="GOA:Q7WQY8" FT /db_xref="InterPro:IPR001626" FT /db_xref="UniProtKB/TrEMBL:Q7WQY8" FT /protein_id="CAE30684.1" FT /translation="MTLAEWLAGPFADYGFMRRALAGAVALSAGAAPLGVFLVLRRMSL FT MGDAMAHAILPGVAAGYLLSGLSLGAMMIGGLVTGLAVALLAGLVARLTPLREDASFAS FT FYLISLGLGVLLVSLRGSNMDLLHVLFGTVLGLDDAALLLVTAVASATLCILALAYRLL FT VAECLDPGFLRAAGGRGAWVHMLFMGLVVLNLVAGFQVLGTLMVVGLMMLPAAAARFWA FT GSAPGQIALAAVSACAASAVGLLVSFHANVPASPAIILAAGAFYLFSVACGPHGGLLVA FT ARRARRARPWQPEGDLP" FT misc_feature 190899..191681 FT /note="HMMPfam hit to PF00950, DE ABC 3 transport family, FT score 5.3e-43" FT misc_feature join(190923..190982,191064..191132,191166..191225, FT 191283..191351,191385..191453,191463..191531, FT 191550..191618,191631..191699) FT /note="8 probable transmembrane helices predicted for FT BB0184 by TMHMM2.0 at aa 21-40, 68-90, 102-121, 141-163, FT 175-197, 201-223, 230-252 and 257-279" FT CDS 191756..192685 FT /transl_table=11 FT /locus_tag="BB0185" FT /product="putative periplasmic solute binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3080" FT /db_xref="GOA:Q7WQY7" FT /db_xref="HSSP:1K0F" FT /db_xref="InterPro:IPR006128" FT /db_xref="UniProtKB/TrEMBL:Q7WQY7" FT /protein_id="CAE30685.1" FT /translation="MKSRILALAAAVLLAPLVAAAQPLQVVASFSILADIAAQVGGPDV FT AVQSLVGPDGDAHEYEPTPADARKLAAAQVLVVNGLDFEAWLPRLQKAAGFAGRTVVAS FT EGIEPRRLDDAHEEHGDHDHDHDHGHHHHGDLDPHAWQDLANGATYARNIARAFAEADP FT AHAQAYRQRADAYVARIEALDQRVRQLFEAIEPARRKVVSSHDAFGYFGQAYGVRFVAL FT AGVSTDAEPSAADMARIIEQVRRERVPAVFVENIANPRLAQQLVRETQARLGGTLYSDA FT LAQPGKPAGTYLGMFEWNAQQLAAALRP" FT misc_feature 191756..191818 FT /note="Signal peptide predicted for BB0185 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.799 between residues 21 and 22" FT misc_feature 191768..192679 FT /note="HMMPfam hit to PF01297, DE Periplasmic solute FT binding protein family, score 2.1e-92" FT CDS 192733..193314 FT /transl_table=11 FT /locus_tag="BB0186" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3079" FT /db_xref="InterPro:IPR010412" FT /db_xref="UniProtKB/TrEMBL:Q7WQY6" FT /protein_id="CAE30686.1" FT /translation="MWIDARAVVEFDAAGRIAAVRQVWRFDDMFGAYATQGLSSKPGGG FT LPPDVLRTMAEDWMKALGEPVSHYFTRVTQGARTLPFGPPRDAAVSFEDGRLTLAFTLP FT LAAPAPARGATAVDIYDPTYFVAYAFDEAGATALHGAPAGCSQAYRPPRPLDWATMQQL FT AAIPADPEALPEELFAITKGLTHRIEVTCP" FT CDS 193305..194273 FT /transl_table=11 FT /locus_tag="BB0187" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3078" FT /db_xref="GOA:Q7WQY5" FT /db_xref="InterPro:IPR011541" FT /db_xref="UniProtKB/TrEMBL:Q7WQY5" FT /protein_id="CAE30687.1" FT /translation="MSVVRAGALVVLVLGCLAALPAAAQGGHPFGVPEATGAPGWLAGW FT FGQVAMWQAHFYRQLTGAVRAWQAEGGAAWMLIGLSFAYGVFHALGPGHGKAVIASYVL FT ANRQTARNGAWLALLSALAQALVAVALVTVLAVALGATAAAMNRATQWLETAAYAVVSL FT LGAWLVWQKALRPWWGSKGGHGHDHHAHHHAPDCACGHAHAPSARQAAGPLSARKAWAA FT ILAVGLRPCSGALIVLVFALAQGFFLAGVVATLAMGLGTGLTVAMLVALAAGARDAATR FT LGARLSTRRAAMLRQAIEALAAVAVLLLGLSLLGGQLAALR" FT misc_feature 193305..193376 FT /note="Signal peptide predicted for BB0188 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.993 between residues 24 and 25" FT misc_feature 193320..193352 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature join(193323..193376,193518..193586,193647..193715, FT 193758..193814,193980..194048,194061..194129, FT 194196..194264) FT /note="7 probable transmembrane helices predicted for FT BB0188 by TMHMM2.0 at aa 7-24, 72-94, 115-137, 152-170, FT 226-248, 253-275 and 298-320" FT CDS 194322..196463 FT /transl_table=11 FT /locus_tag="BB0189" FT /product="putative outer membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3077" FT /db_xref="GOA:Q7WQY4" FT /db_xref="InterPro:IPR012910" FT /db_xref="UniProtKB/TrEMBL:Q7WQY4" FT /protein_id="CAE30688.1" FT /translation="MVCYIVSFNENGTSFYREGNMRFERHPLSAALALALAWQGAHAQA FT SADGTPEAATLAPITVSASPLAGDLDSMTAPAAVLEGDQLLLRRQGTLGDTLDGLPGVH FT ADTFGGGASRPVIRGQTAPRVKVLSDGSELMDASAISPDHAVTTEPLLADKIEVLRGPA FT TLLYGGGAIGGVVNVLDRKIPTAVPQQGIEAEAELRGATGTKERAGAIGITAGSGNFAV FT RVEGLKRRSSDYRVPDWPDGKLAGSYSESGQGTVGMSWITPRGYVGVAFTHLESKYGLP FT GHNHEYEGCHPHGSHLHCGGHDDHGHGHDEHEEGEAEHDHGHEHGAGDVPYVKLRSNRT FT DLRAEYTDPFAGFEKIRFRGGLTDYRHDEIEGGQLGTRFQNRGYDARLELTHRPLYGWH FT GVVGVQTSYSDFRATGEEAFLPRSKTRAHGLFLLEEYRWADWRVELGARQDWQRVSPQG FT GAPASRTAGTSLSAAAIWDFAPQYSLALSVSRSQRLPSAQELYADGVHLATNTYEIGDP FT GLDRETSRNVDLTLRKHSGDTTFSVSAFHNRVKNYIYANTLDRYEDFRLIEYTQRDAEF FT TGVEGEIRHRFGKVFSAAVFGDYVRGRLTGGGGNLPRIPAARLGVRADAQWQNWAGGVE FT YFHVYRQDDIAAYESSTPGYDMVNATIRYRGKLDRTAYEIYLRGNNLLNKLAFNHASFI FT STVAPLPGRSVLLGVRLTY" FT misc_feature 194322..194450 FT /note="Signal peptide predicted for BB0189 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.768) with cleavage site FT probability 0.707 between residues 43 and 44" FT CDS complement(196476..197456) FT /transl_table=11 FT /locus_tag="BB0190" FT /product="putative integrase/recombinase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3076" FT /db_xref="GOA:Q7WQY3" FT /db_xref="HSSP:1A0P" FT /db_xref="InterPro:IPR011931" FT /db_xref="UniProtKB/TrEMBL:Q7WQY3" FT /protein_id="CAE30689.1" FT /translation="MSAAPAASPLPQPMADWLRHLQAHRRYSAHTLDGYTRDLRQLAQL FT AAAAGLPLERVANGHIRHFVARLHAQGLGPRSLARALAAWRGFYQWWAPAAGLPGNPAT FT GVRAPKAPRGLPKALSVEQTQVLLDHAPARLATEPAALRDHAMFELLYSSGLRLAELVS FT LDLHYERTPEYESRSWLNRDDAEVIVVGKGGKRRSVPVGQSALAALDKWLQARPQLAAA FT GAGAQDAAALFVGTRGRRIAPRVVQLQLARLAQAAGLPAHVHPHVLRHSFASHVLQSAQ FT DLRAVQEMLGHANISTTQVYTRLDFQHLARAYDQAHPRAGRKTSR" FT misc_feature complement(196524..197102) FT /note="HMMPfam hit to PF00589, DE Phage integrase family, FT score 6.4e-33" FT misc_feature complement(197163..197423) FT /note="HMMPfam hit to PF02899, DE Phage integrase, FT N-terminal SAM-like domain, score 4.2e-18" FT CDS complement(197471..198163) FT /transl_table=11 FT /locus_tag="BB0191" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3075" FT /db_xref="InterPro:IPR007435" FT /db_xref="UniProtKB/TrEMBL:Q7WQY2" FT /protein_id="CAE30690.1" FT /translation="MTAHTPTEPLNAHAVAEFLQHNPDFFIEHADVFATLQIPNPHGSR FT AISLGERQIQTLRERTRELEWRLSELIRNANSNETIGDHLSQWCCRMLAEADAQHVPGE FT IALGLAEQFDLNHVALRLWRLEGLPESGYGEPVSDDVRTFADSLKTPYCGTDTEFEAVS FT WLDAKPKSLALVALRPDAEAPTFGLLVLGSDDAARFAPDMGTAFLEAIGKLASAALRRL FT GTPPLAAA" FT CDS complement(198190..199101) FT /transl_table=11 FT /gene="dapF" FT /locus_tag="BB0192" FT /product="diaminopimelate epimerase" FT /EC_number="5.1.1.7" FT /note="ortholog of Bordetella pertussis (BX470248) BP3074" FT /db_xref="GOA:Q7WQY1" FT /db_xref="HSSP:1GQZ" FT /db_xref="InterPro:IPR018510" FT /db_xref="UniProtKB/TrEMBL:Q7WQY1" FT /protein_id="CAE30691.1" FT /translation="MGDNPCMMWNFTKMHGAGNDFVVLDGVRQDIAMTPERARALADRH FT FGIGADQILLVEPATRADADFRYRIFNADGSEVEHCGNGARCFVRFVHEQGLSARNPLR FT AEIVTGVIVLDEGEDEQVTVDMGSTRFDPPSLPFDSTGLSAQTQGQDTVWNLEIDAPAG FT LPRSVAISTVAISNPHAVQVVDDVDAAPVGVIGPLVESHPRFARRVNVGFMQVVDRHQI FT RLRVYERGAGETLACGTGACAAVAAGVRRGLLDSPVRVHTRGGMLTVDWNGERLRMTGP FT AISVFSGQVDIDRLVFTSGLHR" FT misc_feature complement(198247..198591) FT /note="HMMPfam hit to PF01678, DE Diaminopimelate FT epimerase, score 1.9e-37" FT misc_feature complement(198706..199071) FT /note="HMMPfam hit to PF01678, DE Diaminopimelate FT epimerase, score 1.4e-38" FT misc_feature complement(198844..198888) FT /note="PS01326 Diaminopimelate epimerase signature." FT CDS complement(199144..200034) FT /transl_table=11 FT /locus_tag="BB0193" FT /product="putative acyltransferase" FT /EC_number="2.3.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3073" FT /db_xref="GOA:Q7WQY0" FT /db_xref="InterPro:IPR004960" FT /db_xref="UniProtKB/TrEMBL:Q7WQY0" FT /protein_id="CAE30692.1" FT /translation="MSQFKTRALTAMLRGFARMRPATRQRAGALVGWLSYRLARSRVRI FT VRRNLELCFPGQPEAVRERWTREHFRALGQSIVDRGVLWYGSPEAVREMVTQTGAERIN FT ALIAAGRPVILLAPHFVALDAAATRLTMEVPSGATMYTPQSDPAVDAIVRAGRARFNEV FT FLVSRKDGVRDLVRHLREPRPVYYLPDMDFGRAGSVFVPFFGVPAATLLATAQLARKWN FT AAVLPILDFWDPRTGRYHVEVLPELPDFPGDGSLEDATARLNRELESWVLRCPSQYYWV FT HRRFKTRPLGEPKLY" FT misc_feature complement(199174..200034) FT /note="HMMPfam hit to PF03279, DE Bacterial lipid A FT biosynthesis acyltransferase, score 2e-59" FT CDS complement(200031..200897) FT /transl_table=11 FT /locus_tag="BB0194" FT /product="putative acyltransferase" FT /EC_number="2.3.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3072" FT /db_xref="GOA:Q7WQX9" FT /db_xref="InterPro:IPR004960" FT /db_xref="UniProtKB/TrEMBL:Q7WQX9" FT /protein_id="CAE30693.1" FT /translation="MLVTLLRMAAALPLPFLHAAGRLLGRLAYAFPGKYRDRLRANAAQ FT AGYPQPAFARRAAGEIGAMILEMPKVWFRNEQSLGKVVSDDYAIVEAARAEGRGILFLT FT PHLGCFEITARYLARQMPMTVMFRPPRKAALAPVLERARNTSAVNAVPATMQGVREFVR FT TLRRGESVGMLPDQAPGVGDGVWAPFFGRMAYTMTLPGKLASQTGVAVILTAGERLPGG FT RGWRIHYARVPEPLPDGPQEQAALINSAMESLIRRFPEQYLWGYNRYKVPRGAPPAPDS FT ARQEPEQ" FT misc_feature complement(200085..200897) FT /note="HMMPfam hit to PF03279, DE Bacterial lipid A FT biosynthesis acyltransferase, score 5e-18" FT misc_feature complement(200841..200897) FT /note="Signal peptide predicted for BB0194 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.922) with cleavage site FT probability 0.902 between residues 19 and 20" FT CDS 201045..202343 FT /transl_table=11 FT /gene="metK" FT /locus_tag="BB0195" FT /product="S-adenosylmethionine synthetase" FT /EC_number="2.5.1.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP3071" FT /db_xref="GOA:Q7WQX8" FT /db_xref="InterPro:IPR002133" FT /db_xref="UniProtKB/Swiss-Prot:Q7WQX8" FT /protein_id="CAE30694.1" FT /translation="MALVRQVRAKSAKASRPDLPYIAIPGCSAPRNLCAGFRPVREEVS FT VANNDFLFTSESVSEGHPDKVADQISDAILDAIFTQDPNARVAAETLCNTGLVVLAGEI FT TTTANVDYIQVARDTIRHIGYDNTEYGIDYKGCAVLVAYDKQSPDIAQGVDRSSEDYLN FT QGAGDQGLMFGYACDETPDLMPAPIWYAHRLVQRQSELRKDGRLPWLRPDAKSQVTFRY FT VDGRPAEVDTVVLSTQHSPEISQASIREAVIEDIIKPSFPEGLITPKTKFLVNPTGRFV FT IGGPQGDCGLTGRKIIVDTYGGACPHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGL FT ARQCQVQVSYAIGVAEPINITVYTEGTGVIPDEQIAKLVREHFDLRPKGIVNMLDLLRP FT IYTKTAAYGHFGRSEPEFSWEATDKAAALKQGA" FT misc_feature 201189..201491 FT /note="HMMPfam hit to PF00438, DE S-adenosylmethionine FT synthetase, N-terminal domain, score 6.5e-53" FT misc_feature 201528..201884 FT /note="HMMPfam hit to PF02772, DE S-adenosylmethionine FT synthetase, central domain, score 3.1e-71" FT misc_feature 201537..201569 FT /note="PS00376 S-adenosylmethionine synthetase signature FT 1." FT misc_feature 201888..202337 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02773, DE S-adenosylmethionine FT synthetase, C-terminal domain, score 1e-81" FT misc_feature 201966..201992 FT /note="PS00377 S-adenosylmethionine synthetase signature FT 2." FT CDS 202454..202702 FT /transl_table=11 FT /locus_tag="BB0196" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3070" FT /db_xref="InterPro:IPR010710" FT /db_xref="UniProtKB/TrEMBL:Q7WQX7" FT /protein_id="CAE30695.1" FT /translation="MTDASFPVAPRVESDETPDRPARVFTATDSPCVAVCSTLFDDICR FT GCGRTAMEVANWVFMSEEEKREVWVRIQAQGYPRRNN" FT CDS 202782..203822 FT /transl_table=11 FT /locus_tag="BB0197" FT /product="putative glycosyl transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3069" FT /db_xref="GOA:Q7WQX6" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7WQX6" FT /protein_id="CAE30696.1" FT /translation="MRIVLVTDAWHPQVNGVVRTWTTMQGLLQDWGHELIVVSPQGSRT FT VPAPSEPDLRLCLQPGRQLRRVLGDVVPDALHIATEGPLGLAARRMALRRGWRFTTSFH FT TMFPDYLQARMGIPAGLPWRYLRWFHRPSQRVLVPTPTVRDIVARRGLGNLQVWSRGVD FT ARRFAPGPRDFLPELPRPLFLCVGRVAREKNLDAFLSLALPGSKVIVGGGPDEARLRRK FT FPAAHFAGPQADDRLAAYYNAADVFVFPSLTDTFGLVMLEAMACGTPVAAFRSEAPLAV FT VQQGATGFLDDDLAQACRAALALDRDEVRAHALTRTWDAVARDLLAAFTPLLEAPLALP FT PAAQRI" FT misc_feature 203280..203729 FT /note="HMMPfam hit to PF00534, DE Glycosyl transferases FT group 1, score 1e-13" FT CDS 204102..205520 FT /transl_table=11 FT /gene="acyH" FT /locus_tag="BB0198" FT /product="adenosylhomocysteinase" FT /EC_number="3.3.1.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP3068" FT /db_xref="GOA:Q7WQX5" FT /db_xref="InterPro:IPR020082" FT /db_xref="UniProtKB/Swiss-Prot:Q7WQX5" FT /protein_id="CAE30697.1" FT /translation="MNAVTDKSVADYIVADMALAGWGRRELAIAETEMPGLMAIRDEYA FT ASQPLKGARIAGSLHMTIQTGVLIETLVALGAEVRWASCNIFSTQDHAAAAIAATGTPV FT FAIKGETLEEYWQYTHKIFEWPEGRHANMILDDGGDATLLLHLGARAEQDISVLAKPGS FT EEERVLFAAIKETLARDPKWYSTRLAQIKGVTEETTTGVHRLYQMSQKGELAFAAINVN FT DSVTKSKFDNLYGCRESLVDGIKRATDVMVAGKIAVVAGYGDVGKGCAQALAALRAQVW FT VTEIDPICALQAAMEGFKVVTMEEAAAHADIFVTATGNYHVITRQHMEAMKDQAIVCNI FT GHFDNEIDVAGLENCQWEEIKPQVDHVIFPDGKRIILLAKGRLVNLGCATGHPSFVMSS FT SFANQTIAQIELFTRNEAYTTGQVYVLPKHLDEKVARLHLKKLGAKLSTLSKQQADYIG FT VPVEGPFKPGHYRY" FT misc_feature 204129..205514 FT /note="HMMPfam hit to PF00670, DE S-adenosyl-L-homocysteine FT hydrolase, score 0" FT misc_feature 204348..204392 FT /note="PS00738 S-adenosyl-L-homocysteine hydrolase FT signature 1." FT misc_feature 204861..204911 FT /note="PS00739 S-adenosyl-L-homocysteine hydrolase FT signature 2." FT CDS 205591..205926 FT /transl_table=11 FT /locus_tag="BB0199" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3067" FT /db_xref="InterPro:IPR007165" FT /db_xref="UniProtKB/TrEMBL:Q7WQX4" FT /protein_id="CAE30698.1" FT /translation="MALILVWILNAVALLAVAYLLPGITVASFGSALVAALVLGLLNML FT VKPVLVLLTLPITIVTLGLFLIILNALLFWFAGSVLRGFQVNGFWWAVAGAILYSIIAG FT LLTKLIP" FT misc_feature 205591..205695 FT /note="Signal peptide predicted for BB0199 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.984) with cleavage site FT probability 0.467 between residues 35 and 36" FT misc_feature join(205600..205668,205687..205755,205765..205833, FT 205852..205920) FT /note="4 probable transmembrane helices predicted for FT BB0199 by TMHMM2.0 at aa 4-26, 33-55, 59-81 and 88-110" FT CDS 205926..206768 FT /transl_table=11 FT /locus_tag="BB0200" FT /product="putative methylenetetrahydrofolate reductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3066" FT /db_xref="GOA:Q7WQX3" FT /db_xref="HSSP:1B5T" FT /db_xref="InterPro:IPR004620" FT /db_xref="UniProtKB/TrEMBL:Q7WQX3" FT /protein_id="CAE30699.1" FT /translation="MTQSTAPAFSLEFFPPRDIAAQERLVRAAKQMLAIQPRYVSVTFG FT AGGSTRAGTADTVRTLRNLGCDAAPHLSCIGATRDQLRDILAAYREQGVRRLVALRGDL FT PSGMGGDAGELRYASDLVAFIRQETGDWFHIEVAAYPEMHPQAESPSADLAHFVNKVQA FT GADAAITQYFFNPDAYFDFVERAQAKGVAIPIVPGIMPITNHTQLVRFSEMCGAEIPRW FT IRLRLAEYGDDKASIRAFGLDVVSELCQTLLENGAPGVHFYTLNHAEATLGIWKALNA" FT misc_feature 205926..206762 FT /note="HMMPfam hit to PF02219, DE Methylenetetrahydrofolate FT reductase, score 1.4e-95" FT CDS complement(206832..207803) FT /transl_table=11 FT /locus_tag="BB0201" FT /product="putative transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3064" FT /db_xref="GOA:Q7WQX2" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WQX2" FT /protein_id="CAE30700.1" FT /translation="MSASPAPKKSAAALAPERLDWNLLRTFMFVVQERGVGRAATALHL FT SQPAVSQALKRLEQAVGGVLLYRRSGEFRLTNLGEEIYRLAREMYGMVARVEEAATQDE FT DDIAGTLRLLVMSKIQSTAYDDFLAHFHRRYPKVEFYVDVMQSAAILDALAKRVPALGL FT CLCRKAIDTLERRLFLRHRYVVVCGRHHPFFSRRNVRVEDLMDQNFVCFASDQLGDTLS FT PLTIFRDQQGFTGRIVGTSPYLEEIRRMVVAGVGLSFLPEHLIRQDVLAGELRRLPPEH FT NVAEIEVFLAWHRQRKLSAAEQAFLAAFERFLHRTPLEMRAR" FT misc_feature complement(206862..207494) FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 2e-30" FT misc_feature complement(207564..207743) FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 3e-19" FT misc_feature complement(207609..207701) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(207639..207704) FT /note="Predicted helix-turn-helix motif with score FT 1429.000, SD 4.05 at aa 34-55, sequence FT RGVGRAATALHLSQPAVSQALK" FT CDS complement(207867..208886) FT /transl_table=11 FT /locus_tag="BB0202" FT /product="putative aminohydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3063" FT /db_xref="GOA:Q7WQX1" FT /db_xref="InterPro:IPR000286" FT /db_xref="UniProtKB/TrEMBL:Q7WQX1" FT /protein_id="CAE30701.1" FT /translation="MKAFYHPDQKLHHPQTYFSRGKMRTPQEVPARLDALAEAARKLKF FT DVREPADAGAGAIGAVHSLDYLRFLREAHARWKQLPDDWGDEVVSNVFVREPNALRGVL FT AQAARYLADGSCPVGPHTWQSAYWAAQCAISGAQTLLDGERHAYALCRPPGHHARRDAA FT GGFCYLNNAAIAAQMLTQRYKRVAILDTDMHHGQGIQEIFYERSDVLYVSIHGDPENFY FT PVVAGFENERGAGEGYGYNVNLPMPHGSPEPVFFDHLQQAQRAIELFQPDALVLSLGFD FT VFEKDPQAMVAVSANGFERLGQAIGAFKLPTLIVQEGGYYIEGLEDNAERFFAGLAKA" FT misc_feature complement(207873..208811) FT /note="HMMPfam hit to PF00850, DE Histone deacetylase FT family, score 1.9e-55" FT CDS complement(208888..210261) FT /transl_table=11 FT /locus_tag="BB0203" FT /product="putative integral membrane transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3062" FT /db_xref="GOA:Q7WQX0" FT /db_xref="InterPro:IPR005828" FT /db_xref="UniProtKB/TrEMBL:Q7WQX0" FT /protein_id="CAE30702.1" FT /translation="MPAIRQSYERNMQGNHQTATHQPVRASIAAFVGTMIEWYDFYIYA FT TAAALVFGKLFFPSVDGFYGTLAAFGTFAVGFLARPLGGAVFGHIGDRIGRKKSLVITL FT LLMGTVTVLIGLLPTYASIGIWAPILLVALRFIQGIAVGGEWGGAVLMAGEHSPDRSKR FT TFFASFAQLGSPAGLILSMLMFKLVTSLDDAAFMDWGWRVPFLFSAALLVVGFAIRLSV FT NESPDFLAEQAEKARLKDAAAKQAADKAPIVEVLRGASGLLALAVGANVLGIAGFYFTN FT TFMLAYTTQYVGLSRGVILDCLLVVSVMQFIITPLSAYIATRIGSRRFLLITSFLSIFT FT PYVMFNMVDQGTLTSLTLGVGLAVVCLGAYYAVIAGYVSDSFPTRIRYTGISMAYQLSG FT AIFGGLTPILGTILAEKFQGHWWPLALLFSGISLLSMISVIFLANHRTDAVTAPLRSA" FT misc_feature complement(208909..210189) FT /note="HMMPfam hit to PF00083, DE Sugar (and other) FT transporter, score 3.7e-29" FT misc_feature complement(join(208927..208995,209023..209091, FT 209128..209196,209224..209277,209302..209370, FT 209413..209481,209596..209664,209707..209766, FT 209803..209871,209899..209967,210001..210069, FT 210112..210180)) FT /note="12 probable transmembrane helices predicted for FT BB0203 by TMHMM2.0 at aa 28-50, 65-87, 99-121, 131-153, FT 166-185, 200-222, 261-283, 298-320, 329-346, 356-378, FT 391-413 and 423-445" FT CDS complement(210539..211219) FT /transl_table=11 FT /locus_tag="BB0205" FT /product="5-formyltetrahydrofolate cyclo-ligase family FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3061" FT /db_xref="GOA:Q7WQW9" FT /db_xref="InterPro:IPR002698" FT /db_xref="UniProtKB/TrEMBL:Q7WQW9" FT /protein_id="CAE30703.1" FT /translation="MHTQNTAKNTAAALRARLRQSRAELTSSQRSRGALLMRGRLFTWL FT NLACEQAAAQGRPLSRVAAFWPMEDEPDLLPLLEQWVESGIAVCLPAVQERDAPLVFRD FT WTPDSAMRTGAYGIQEPAAGPAVVPDVVLVPTLGYTLDAARLGYGGGYYDRTLAAWQAA FT GASPTTIGIAWSEGLLPDDYQAAAHDIALDAILTPDGWVPGAPLVASGAAAGHRSAGSR FT FLLR" FT misc_feature complement(210626..211195) FT /note="HMMPfam hit to PF01812, DE 5-formyltetrahydrofolate FT cyclo-ligase family, score 1.4e-26" FT CDS 211232..213358 FT /transl_table=11 FT /locus_tag="BB0206" FT /product="putative transglycosylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3060" FT /db_xref="GOA:Q7WQW8" FT /db_xref="InterPro:IPR008939" FT /db_xref="UniProtKB/TrEMBL:Q7WQW8" FT /protein_id="CAE30704.1" FT /translation="MKRVLEARRYQKLALRDAADGMRGWLPVLALFTAACAPVDAQQRA FT AASAAPAAVSMQAAPDAEQARRPIAVPPAVLAGLPPAPQTPAQQAVVAAREASQRKQWS FT VLGALAPQARTDPLGMYPEYWLLRYQLWSPPGGRRPDAELQRFLAAHAGSYLEDRLRGD FT WIQAAARAGDFETVRRLGPVKQGNAQIACAGLDARHMTGQRASAAEAVAAFAPGTACWA FT LYDQLVADGVLGWDEIQPQLRDAIEAGKLSDARKLAQYIFEPKDQKSYDQMMKDPMKWL FT VRQDKSPVGRNEKELVTLALARLNKSDVSVADSYLRREWSRHLPRQNLAWVRSQYALVA FT VLNQDPRAYEWYREAGAVRMTEYSHAWKVRSALRQPRIDWKWVIEAIEGMPPSQQAEPV FT WVYWKARGQAALGRDQQASQAYASIADQFNFYGQLAAEELGRRITVPPAPAPVTDAEIA FT EARAHPGLRRAIYLFRLGWRAEAVPEWNFSLRGMSDRQLFAAAELARAEGIYDRVVNTS FT ERTAEQFDFSQRFIAPFEGRVSAKARAIDLDPAWVYGLIRQESRFIMDARSHAGASGLM FT QLMPATAKWVAGKIGMSDFRPGSVNDFDVNTELGTQYLNIVLQGLDGSQVLASAGYNAG FT PGRPRNWRASFGHPVEGAIFAETIPFNETRLYVKNVMSNAVYYAAMFSGQPQSLKERLG FT SIVPPQAALATNQR" FT misc_feature 212837..213196 FT /note="HMMPfam hit to PF01464, DE Transglycosylase SLT FT domain, score 1.3e-19" FT CDS 213355..214449 FT /transl_table=11 FT /gene="cca" FT /locus_tag="BB0207" FT /product="tRNA nucleotidyltransferase" FT /EC_number="2.7.7.25" FT /note="ortholog of Bordetella pertussis (BX470248) BP3059" FT /db_xref="GOA:Q7U391" FT /db_xref="InterPro:IPR002646" FT /db_xref="UniProtKB/Swiss-Prot:Q7U391" FT /protein_id="CAE30705.1" FT /translation="MSRADDPGVAGLQVYIVGGAVRDGLLGLPAGDRDWVVVGATPEDM FT ARRGFIPVGGDFPVFLHPRTKEEYALARTERKSGRGYKGFTFYTGADVTLEQDLQRRDL FT TVNAIARTPQGELVDPLDGVADVRARVLRHVGEAFAEDPVRILRLGRFAARFGDFSIAP FT ETMQLCRRMVEAGEADALVPERVWKEVSRGLMAQAPSRMLDVLARAGALARVMPELHDD FT AAVRAEIDRAAAAGLPLAGRYALLCRHTPERDALGRRLRAPVECMDQARLLPLAVDALA FT ASATPAAQLDLIERCDALRKPERFDALLQAAAIVAPVDLSAWRARVQAVRAIDAGAIAR FT QCAGDPARIKPALRQARLQALGGA" FT misc_feature 213559..214029 FT /note="HMMPfam hit to PF01743, DE Poly A polymerase family, FT score 7.9e-34" FT CDS complement(214464..215723) FT /transl_table=11 FT /locus_tag="BB0208" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3058" FT /db_xref="InterPro:IPR003788" FT /db_xref="UniProtKB/TrEMBL:Q7WQW7" FT /protein_id="CAE30706.1" FT /translation="MRRGPARAAALHRAFSLHGKIAAMQRPASSSLPPLDPAASAHSAS FT VARHLRAAIAAAGGWLPFSQWMSAALYAPGLGYYTAGATKLASPADAQGPALPAGDFVT FT APELTPLFAATVARQIAQVLRATDTASVLEFGAGTGALAEGVLRALAGLDCPARYLIVE FT VSADLRQRQQSRLAPFGDRVQWLDQLPDAFAGCVLGNEVLDAMPATLFRWSETGVVQER FT GVTVDADGEFAWQDRDADAPLAQAVAQRMPPLPGYVSEINLQAEAWVRGMGLWLQRGAA FT LLLDYGFPRSEYYHPQRAGGTLMCHLRHHAHADPFVAPGLQDITSHVDFTAMADAALAG FT GLQVLGYLSQARFLVNAGLLDALSQLDPADARAYAQAVAPVQKLLSEAEMGELFKVLAV FT GRDMPEPLLGFARGDRRGTL" FT misc_feature complement(214521..215549) FT /note="HMMPfam hit to PF02636, DE Uncharacterized ACR, FT COG1565, score 2.9e-34" FT CDS complement(215743..217467) FT /transl_table=11 FT /locus_tag="BB0209" FT /product="putative ATP-dependent RNA helicase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3057" FT /db_xref="GOA:Q7WQW6" FT /db_xref="HSSP:1HV8" FT /db_xref="InterPro:IPR014001" FT /db_xref="UniProtKB/TrEMBL:Q7WQW6" FT /protein_id="CAE30707.1" FT /translation="MHMRRYMRQGKAMSFEDLGLAPTILSALSEAGFTEPTSVQAAAIP FT QAMAGADLMVSSQTGSGKTAAFMLPALNRIAHQPGNKGVGVQVLVLTPTRELALQVADA FT TASYGRNLPGLRTATVVGGMPYGAQLKALSRRVDVLVATPGRLIDHLKAGRVKLNTVHT FT LVLDEADRMLDMGFIEDIETIIERLPKERQTLLFSATLDGSVARLAERMMREPQRIEIA FT GHRQKHANITQSLLYADDAAHKMRLLDHVLRDARLDQAIVFTATKRGADDLADRLADQG FT FAAAALHGDMNQRQRTRTLGQLQRGQLRVLVATDVAARGIDVQGISHAVNFDLPLQAED FT YVHRIGRTGRAGRDGQAFTLATHAERHKVRRIEHYIGQSINAEVIAGLEPQRTPRPSTG FT GPRRGGKPMGGKRPGGYGAPREFGDRPQRPYGDRPQRDFGDRPQRDASDRPQRSFGDRP FT QRDFGDRPQRPYGDRPQRDFGDRPQRPYGDRPQRDFGDRPQRSFGDRPQRDFGDRPQRD FT IGDRPQRDFGDRPQRSFGDRPQREGGWHGAPREGRSFDKRPGGPAKRFAKPAAPRRG" FT misc_feature complement(216412..216627) FT /note="HMMPfam hit to PF00271, DE Helicase conserved FT C-terminal domain, score 1.8e-30" FT misc_feature complement(216766..217392) FT /note="HMMPfam hit to PF00270, DE DEAD/DEAH box helicase, FT score 1.7e-75" FT misc_feature complement(216949..216975) FT /note="PS00039 DEAD-box subfamily ATP-dependent helicases FT signature." FT misc_feature complement(217345..217467) FT /note="Signal peptide predicted for BB0209 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.742) with cleavage site FT probability 0.697 between residues 41 and 42" FT CDS complement(217706..218458) FT /transl_table=11 FT /gene="ung" FT /locus_tag="BB0210" FT /product="uracil-DNA glycosylase" FT /EC_number="3.2.2.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3056" FT /db_xref="GOA:Q7WQW5" FT /db_xref="InterPro:IPR005122" FT /db_xref="UniProtKB/Swiss-Prot:Q7WQW5" FT /protein_id="CAE30708.1" FT /translation="MPNDNRLAPAALAAQAAALPAAWRHVLEQPAVARAFASVLGHVEQ FT RLAEGAVVYPATPFRALDQLAPADVRVVILGQDPYHGPGQAQGLAFSVPDDCKCPPSLR FT NIFNEIAVDYPRPTRHDLSAWTRQGVLLLNTSLTVEDGQPGSHAKRGWETVTDALIAEV FT ARDPSPKVFLLWGAHAQAKQALVPADAGHLVLAANHPSPLSARRPPVPFVGCGHFRQTN FT AWLQQRGQKPVDWSGEQNNASRQGKFAL" FT misc_feature complement(217781..218272) FT /note="HMMPfam hit to PF03167, DE Uracil DNA glycosylase FT superfamily, score 8.6e-60" FT misc_feature complement(218219..218248) FT /note="PS00130 Uracil-DNA glycosylase signature." FT misc_feature complement(218405..218458) FT /note="Signal peptide predicted for BB0210 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.948) with cleavage site FT probability 0.451 between residues 18 and 19" FT CDS complement(218495..219223) FT /transl_table=11 FT /locus_tag="BB0211" FT /product="haloacid dehalogenase-like hydrolase" FT /db_xref="GOA:Q7WQW4" FT /db_xref="InterPro:IPR006402" FT /db_xref="UniProtKB/TrEMBL:Q7WQW4" FT /protein_id="CAE30709.1" FT /translation="MDALPTLPPTAAMTDFPFDAVLFDCDGVLVDSEPITNRVLCQMLG FT ELGWELSPEETMRIFTGKAVRDELPLIEARTGTRLTDEWFREFRQRRNDALDRELVEIP FT GAPQAVRALHAALDGRVAVASGADRLKVEMQLAKVGLADCFTGRVFSGQELPRSKPFPD FT VYLTAAQALDVAPSRCAIVEDSVIGATAGVAAGATVFGYSPPGQAGHSDAQALLATGVA FT HVLTDMAELPSVLAAWRAAG" FT misc_feature complement(218609..219172) FT /note="HMMPfam hit to PF00702, DE haloacid FT dehalogenase-like hydrolase, score 8.9e-24" FT CDS complement(219276..220013) FT /transl_table=11 FT /locus_tag="BB0212" FT /product="phosphorylase family protein" FT /db_xref="GOA:Q7WQW3" FT /db_xref="HSSP:1JYS" FT /db_xref="InterPro:IPR018017" FT /db_xref="UniProtKB/TrEMBL:Q7WQW3" FT /protein_id="CAE30710.1" FT /translation="MLGILAALTDEIRALLDEMGPGAVTRRIGMRDYHVGELRGQPCVL FT VLTRVGKVAAAATTATLLREFPVDAVVFTGLAGGLHDSVRVGDIVIGTALIQHDLDARP FT LFPQYEVPLLERSHFATDAGLTERLHRCATGFLAGHAAGRAVPPSVHRGLIATGDCFVN FT RADTLRGLKAALPDALCVEMEGAAVAQVCHEFGVPCAVMRTVSDRADGSAMVDFQGFLR FT EVASVYSAGVLRGFLDMPRGARD" FT misc_feature complement(219303..220013) FT /note="HMMPfam hit to PF01048, DE Phosphorylase family, FT score 1.6e-33" FT CDS 220172..220987 FT /transl_table=11 FT /locus_tag="BB0213" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR007087" FT /db_xref="UniProtKB/TrEMBL:Q7WQW2" FT /protein_id="CAE30711.1" FT /translation="MQTSMEGHEVVSRQAWLERRRALLEREKAQTRLRDELAAQRRALP FT WVRVDKPYAFETARGRRTLADLFDGRSQLIVKHFMLGPGWGEGCVGCSFEVDHVEGALL FT HLRHHDVGYVAVSRAPLAEIEAFKRRMGWGFEWVSSYGDDFNFDYHVSFTPQDMARGRG FT QYNYAETELPIDELSGLSVFYRDAAGEVFHTYSAYGRGAEEVLGAYMLLDLTPKGRNET FT GPRHDLTDWVRHHDRYGAAGQVAATGRYEASGGQAPPDAAPGCCGAPHT" FT misc_feature 220436..220498 FT /note="PS00028 Zinc finger, C2H2 type, domain." FT CDS complement(220993..221772) FT /transl_table=11 FT /locus_tag="BB0214" FT /product="AraC family transcriptional regulator" FT /db_xref="GOA:Q7WQW1" FT /db_xref="InterPro:IPR000005" FT /db_xref="UniProtKB/TrEMBL:Q7WQW1" FT /protein_id="CAE30712.1" FT /translation="MLEQGPPTVNPAHLLTAFSIERARQARGISVPAHSHAEGMLVLVQ FT TGLALVQGNTEMLTMAPGNIGWVPPGIMHEAHWFGHARGTFLYVRADACARLPGHTSAW FT PLRPLVDALIDRLAGPAGAALSPAYGERLFDILLTELGLCEQSAHTLPMPRERRLRELA FT VRLLASPDDGSSIETWAERLNMSARTLMRRFRGETGITLGQWRQKVRLLRALELLAGGK FT PVTDVALAVGYDSPSAFIGSFRATYGVTPSQYFARNA" FT misc_feature complement(221005..221133) FT /note="HMMPfam hit to PF00165, DE Bacterial regulatory FT helix-turn-helix proteins, araC family, score 3.2e-09" FT misc_feature complement(221020..221145) FT /note="PS00041 Bacterial regulatory proteins, araC family FT signature." FT misc_feature complement(221152..221286) FT /note="HMMPfam hit to PF00165, DE Bacterial regulatory FT helix-turn-helix proteins, araC family, score 3.2e-05" FT misc_feature complement(221188..221253) FT /note="Predicted helix-turn-helix motif with score FT 1527.000, SD 4.39 at aa 174-195, sequence FT SSIETWAERLNMSARTLMRRFR" FT CDS 221884..222324 FT /transl_table=11 FT /gene="fur" FT /locus_tag="BB0215" FT /product="ferric uptake regulation protein" FT /db_xref="GOA:Q7WQW0" FT /db_xref="HSSP:1MZB" FT /db_xref="InterPro:IPR002481" FT /db_xref="UniProtKB/TrEMBL:Q7WQW0" FT /protein_id="CAE30713.1" FT /translation="MVGKDLRSAGIKATLPRLQVLEVFNRHPDRHLSAAEVYRTLAAER FT TPLGLATVYRVLGQLAQAGVLSRLQLDPHGSLFELAGKGRHDHLVCTRCGRVVESADPA FT IARQAARVARRHGFVLEAYNLGLYGRCRTCSALVSGPKGVFE" FT misc_feature 221905..222267 FT /note="HMMPfam hit to PF01475, DE Ferric uptake regulator FT family, score 1.5e-41" FT CDS 222321..222719 FT /transl_table=11 FT /locus_tag="BB0216" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q7WQV9" FT /protein_id="CAE30714.1" FT /translation="MNQADFRYHDVTGFPLVVARHRDGEPGFAARWIAEMERLAGNAAQ FT FVMIVPDLDVEIAHDDRKAMVQWQTGNMARLRECCKGFIAVKPDPSGLARTQAQAEKMT FT RAFGLPFCAVATLAQAREKARQLLEPAG" FT CDS complement(222727..223923) FT /transl_table=11 FT /locus_tag="BB0217" FT /product="putative Na+/H+ antiporter protein" FT /db_xref="GOA:Q7WQV8" FT /db_xref="InterPro:IPR004670" FT /db_xref="UniProtKB/Swiss-Prot:Q7WQV8" FT /protein_id="CAE30715.1" FT /translation="MPTTPTRAPSLLQAFLRSEALGGYVLMIAAVLALIVANSPLAPAY FT FQLLGTKLGYASEAFTLKESVLHWINDGLMAVFFLLVGLEIKREMLDGQLRGVSRIVLP FT GVAAAGGMLMPALVYLLVNQGDPAGLRGWAIPAATDIAFALGILALLGSRVPTSLKIFL FT TALAILDDLGAIAIIAVFYTAELNTSALAAAGGLLAALCVLNRLRVLRLAPYLLVGALL FT WYFVLKSGVHATLAGVALALAIPLRRQDPRQPGAEHSPLHALEHALHRPVALLIVPVFG FT FANAGVSFDGMGIDSLTAPIPLGIALGLFLGKQLGVFGFAWLAIRTGLASMPRHASFAQ FT LYGVALLCGIGFTMSLFIGALAFDDAATIDATKIGVLTGSLVSAVLGYALLRVLPPAD" FT misc_feature complement(join(222736..222804,222841..222909, FT 222952..223020,223057..223125,223192..223260, FT 223294..223362,223372..223440,223459..223527, FT 223555..223623,223672..223728,223771..223839)) FT /note="11 probable transmembrane helices predicted for FT BB0217 by TMHMM2.0 at aa 5-27, 42-60, 77-99, 109-131, FT 138-160, 164-186, 198-220, 243-265, 278-300, 315-337 and FT 350-372" FT CDS 224115..224465 FT /transl_table=11 FT /locus_tag="BB0218" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q7WQV7" FT /protein_id="CAE30716.1" FT /translation="MAGTLAPIRALFFWPDGAAAPRLVDTGPHLRAPGRGGYQLRLLRP FT SLALRRLARGQARVSVWHGVLRIWQGDALRAAEPAHAGPRARALTAAELRYLAAWLHQQ FT GLHWNTLHDAAL" FT CDS 224449..225582 FT /transl_table=11 FT /locus_tag="BB0219" FT /product="putative glycosyl transferase" FT /db_xref="GOA:Q7WQV6" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7WQV6" FT /protein_id="CAE30717.1" FT /translation="MTQRSEPAVPALRILHTEAATGAGGQETSIYREMLAMRARGHHLE FT AACQPGAPLARRLRAAGFPVHELAMDGVAAGVRAVWRLRELVRGRFDVVNTHSRRDTVL FT AAWAGRMAGAPLIVRTRHLAKPVGSLYTYTWLPHRVIAVSDHVRGQILRAGARAAHVEA FT IASPATLAPAPPASSLRAELGIAAAAQVIGCVAVMRADKGLDDLLDAFVALAGRHAAAH FT LVLVGEPGGIGALLRERAQRLGLGARVHLTGHRDDIPNVLAAFDVFALPTRSEALGLAM FT VEAAAAGLPVVAGNVGGVPEVVRHGATGLLVPPSDPAALAQALERLLVDPALRRAMGRA FT GSRMVRDERDFSPERQAARVEAAYCRWLAQRGRPAWR" FT misc_feature 224971..225480 FT /note="HMMPfam hit to PF00534, DE Glycosyl transferases FT group 1, score 1.9e-47" FT CDS complement(225592..226056) FT /transl_table=11 FT /locus_tag="BB0220" FT /product="conserved hypothetical protein" FT /db_xref="GOA:Q7WQV5" FT /db_xref="InterPro:IPR011151" FT /db_xref="UniProtKB/TrEMBL:Q7WQV5" FT /protein_id="CAE30718.1" FT /translation="MSTRHPDCPLCQQDGGALLWRGSHLRVIEVDDPDYPGFTRVVWNA FT HIAEMTSLSTHGRELLMRAVWAVEQAQRDVLHPDKVNLAALGNVVPHLHWHVIPRWRDD FT RHFPDAIWAAPRVAPGAEPQAWRAARADTAALLPRYRNRVVEAMNALLWH" FT CDS complement(226053..226502) FT /transl_table=11 FT /locus_tag="BB0221" FT /product="acetyltransferase (GNAT) family protein" FT /db_xref="GOA:Q7WQV4" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:Q7WQV4" FT /protein_id="CAE30719.1" FT /translation="MTPTEIRPLSAADHEAWLPLWKGYQEFYKVQLADAATAQTWQRFL FT DPAEPMHAALAWRDGKAIGMVHWIFHRSCWTTGDYCYLQDLFVAPDVRSSGAGRALIEH FT VYADARAQGAARVYWLTHETNTDAMHLYDHIADRSGFLQYRKVLA" FT misc_feature complement(226089..226343) FT /note="HMMPfam hit to PF00583, DE Acetyltransferase (GNAT) FT family, score 5.9e-15" FT CDS complement(226535..228058) FT /transl_table=11 FT /locus_tag="BB0222" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR005660" FT /db_xref="UniProtKB/TrEMBL:Q7WQV3" FT /protein_id="CAE30720.1" FT /translation="MRNGGISRTIGRSPSTHCAMFIEAEADPSLSKAQYKAREARLRTA FT LLKAQYERLQRAEQSLLIVVAGIDGAGKGDTINMLNEWMDPRHIHTMAFGLPDAEELAR FT PPMWRYWNELPAKGRTGIVFGSWYVPLLLEAVRKKPDTARLEAHAAQIRRFEAMLAAEG FT VQIVKLWYHLSAQAQAERTERLLASPETAWQVTPADRKVRKKYGRLRNAGQVAMAYTDA FT AHAPWRVIPSADDEMRAVRTAEAVLAAMRRRATPRSVRAFGAPSPAVHLVDRLGALDYD FT AKEDKDDYEAELGLLQGRLARAVRRDDFRERSLVLVFEGQDAAGKGGAIRRVTRALDAR FT QYDITPVAAPARHELARPYLWRFWRRIPRQGRIAIFDRSWYGRVLVERVENITAPTDWR FT RAYGEILDFERQLVGHGAIVLKFWLAITPAVQLERFREREKSPYKNFKITPDDWRNRKQ FT WQAYADAANEMLCRTDMREAPWHLVSSNDKRYARLQVLRHIVETLEDQL" FT misc_feature complement(226541..227212) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03976, DE Domain of unknown FT function (DUF344), score 7.8e-94" FT misc_feature complement(227285..227974) FT /note="HMMPfam hit to PF03976, DE Domain of unknown FT function (DUF344), score 2.9e-18" FT CDS complement(228072..228941) FT /transl_table=11 FT /locus_tag="BB0223" FT /product="metallo-beta-lactamase superfamily protein" FT /db_xref="GOA:Q7WQV2" FT /db_xref="InterPro:IPR001279" FT /db_xref="UniProtKB/TrEMBL:Q7WQV2" FT /protein_id="CAE30721.1" FT /translation="MSAHIQPFFDPATATFSYVLYEAPGGACAVIDPVLDFDPKSGRTT FT TASADRIADFVRQYALRTQWLLETHAHADHLSAAAYLQRQLGGVIGIGGHIRDVQAVFS FT KLYNLDGFACDGSQFGHLFEPDETFAIGALRVRALHVPGHTPADLAYLIDDGDSLSAFV FT GDTLFMPDVGTARCDFPGGDARTLYHSIRTLLALPPDTRLYMCHDYPPAGRAAAWQTTV FT AAQRAGNIHVRDGISESEFVAMRTARDATLDMPTLILPALQVNIRAGELPAPEANGTRY FT LRIPLDAL" FT misc_feature complement(228321..228914) FT /note="HMMPfam hit to PF00753, DE Metallo-beta-lactamase FT superfamily, score 5.2e-18" FT CDS 229045..229380 FT /transl_table=11 FT /locus_tag="BB0224" FT /product="ArsR family regulatory protein" FT /db_xref="GOA:Q7WQV1" FT /db_xref="InterPro:IPR001845" FT /db_xref="UniProtKB/TrEMBL:Q7WQV1" FT /protein_id="CAE30722.1" FT /translation="MDDTLTDCEISALRASAAQACALLKALANEDRLLLLCQLVAAERN FT VGELETLTGIRQPTLSQQLGVLRDEGLVDTRRAGKYVYYQLASFEVGQVMKTLSSLYCG FT KASREQS" FT misc_feature 229114..229347 FT /note="HMMPfam hit to PF01022, DE Bacterial regulatory FT protein, arsR family, score 1e-17" FT CDS 229377..229808 FT /transl_table=11 FT /locus_tag="BB0225" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR007272" FT /db_xref="UniProtKB/TrEMBL:Q7WQV0" FT /protein_id="CAE30723.1" FT /translation="MTIDWAAFTPWSSLGGGMLIGAAAAWLMLGAGRIAGISGILAGLL FT PPRAGAAWRMWFLAGLLAAPWLYRVFEPMPAVRIEAGALQLVLAGLLVGVGTRYGSGCT FT SGHGVCGLARGSRRSLVAVLVFMATGFATVFVLRHLMGA" FT misc_feature join(229419..229487,229524..229577,229605..229673, FT 229734..229802) FT /note="4 probable transmembrane helices predicted for FT BB0225 by TMHMM2.0 at aa 15-37, 50-67, 77-99 and 120-142" FT CDS 229810..230226 FT /transl_table=11 FT /locus_tag="BB0226" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR007272" FT /db_xref="UniProtKB/TrEMBL:Q7WQU9" FT /protein_id="CAE30724.1" FT /translation="MGNAYSFAAGLIFGLGLLVSGMADPAKVLGFLDLAGAWDPSLGLV FT MAGAIGVAAPAFALARRQARAFDGEPMQWPAAKGIDRRLLGGSALFGVGWGLAGLCPGP FT ALLNAGAGYGQAWLFVAAMAAGMALHGALQRRGA" FT misc_feature 229810..229878 FT /note="Signal peptide predicted for BB0226 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.956) with cleavage site FT probability 0.875 between residues 23 and 24" FT misc_feature join(229822..229875,229918..229986,230059..230127, FT 230140..230208) FT /note="4 probable transmembrane helices predicted for FT BB0226 by TMHMM2.0 at aa 5-22, 37-59, 84-106 and 111-133" FT CDS complement(230242..231507) FT /transl_table=11 FT /locus_tag="BB0227" FT /product="putative phenylacetate-CoA ligase" FT /db_xref="GOA:Q7WQU8" FT /db_xref="InterPro:IPR000873" FT /db_xref="UniProtKB/TrEMBL:Q7WQU8" FT /protein_id="CAE30725.1" FT /translation="MSEFFDVLETRQPAQRERDLMQALPAAIERATARAPAIAGQLRGI FT DPRSVDNRAALAALPVLRKHELLERQQHSRDGAGPAGPAKAFGGFSTVGWGQALRVFAS FT PGPIYEPEGNRADYWRFARALYAAGFRAGELAYNCFSYHFTPAGSMMETAAHAVGCTVF FT PGGTGQTEQQVRAIHDLAPSGYTGTPSFLKLILEKADELGIRLDSLRRALVSGEAFPPS FT LRDWLAARGIEGYQAYGSADLGMIAFETSAREGLVVGEDIILEIVRPGTGEPVPDGEVG FT EVVVTTLNPDYPLVRFGTGDLSAIMPGQSPCGRTNIRIRGWLGRADQTTKVRGMFVHPS FT QVADVLRRHPEIVRARLVVSGATGADHMVLHVQARERSPELAGRIADSVREVTKLRADV FT QWADEGALPNDGKVIDDVRSYE" FT CDS complement(231576..232406) FT /transl_table=11 FT /locus_tag="BB0228" FT /product="ABC transporter ATP-binding protein" FT /db_xref="GOA:Q7WQU7" FT /db_xref="HSSP:1JI0" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WQU7" FT /protein_id="CAE30726.1" FT /translation="MTAANTAPADKVLLDVNGIEVIYNHVILVLKGVSLRVPEGRIVAL FT LGANGAGKTTTLRAVSNLLKGERGDVTKGYIQYRDERIERLSPAELVKRGVVQVMEGRH FT CFAHLTIEENLLTGAYTRKLGRGDIDAALERVYQYFPRLKQRRTSQAGYTSGGEQQMTA FT IGRALMASPTMILLDEPSMGLAPQIVEEIFEIVRDLNQRERVSFLLAEQNTNIALRYAD FT YGYILENGRVMMDGAAAELAQNEDVKEFYLGISSGERKSFREQKFYRRRKRWLA" FT misc_feature complement(231717..232289) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 1.6e-33" FT misc_feature complement(232245..232268) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(232468..233805) FT /transl_table=11 FT /locus_tag="BB0229" FT /product="putative exported protein" FT /db_xref="UniProtKB/TrEMBL:Q7WQU6" FT /protein_id="CAE30727.1" FT /translation="MEMKRLNLRLTAAVIAAAGALGAIAAPAMAAEEQFVPLLVYRTGS FT FAPLGIPWADGKLDYLKLINERDGGINGVKITYEECETAYATDRGVECYERLKTRGTGA FT SGFDTQSTGITFAVSDKAMVDKVPVETMGYGLSQSVDGSVFQWNFPLLGTYWTAADVMV FT QDIAKKEGGMDKLKGKKIALVYHDSPYGKEPIPLLQKRAAKEGFELLLYPVTAPGVEQK FT STWLQVRQQRPNYVLLWSAGIMTPTAIREAQASGYARDKIYAIWWAGSEGDVKDLGDVA FT KGYNAVTIHNSAATGKVYEDLKKYVYDKGQGSDKSGNTTLGTIAHTRGMMISMLQVEAI FT RAAQEKYGKGKALTPEQVRWGFENLNLTQERLDQLGFGEIMRPVKTSCANHMGDDWARI FT VQWDGSKFKVVSDWYQSDKSVLDPMVKEAAAKYAKEKNVTPRNCAG" FT misc_feature complement(233716..233805) FT /note="Signal peptide predicted for BB0229 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 30 and 31" FT misc_feature complement(233719..233787) FT /note="1 probable transmembrane helix predicted for BB0229 FT by TMHMM2.0 at aa 7-29" FT CDS complement(233918..234982) FT /transl_table=11 FT /locus_tag="BB0230" FT /product="putative branched-chain amino acid transport FT system permease" FT /db_xref="GOA:Q7WQU5" FT /db_xref="InterPro:IPR001851" FT /db_xref="UniProtKB/TrEMBL:Q7WQU5" FT /protein_id="CAE30728.1" FT /translation="MFYRENGQFKTSYRADQQIFPIRQDRIFIALLMAVIFVVVPLTAS FT DYLLRAILIPFLILALAAVGLNILVGYCGQISLGTGAFMAVGAYAAWNFGVRFPGMPLV FT AQILLGGCFATLVGVIFGIPSLRIRGLYLAVATLAAQFFVDWAFLRIPFFTNYSSSGSV FT SVPPMTFFGLPVQSALEKYLLVLGFVVVFTLLAKNLVRGAIGRQWMAIRDMDVAAAVIG FT IRPMYAKLSAFAVSSFIVGVAGALWGYVHLGSWEPLAFDLARSFQLLFMVIIGGLGSIL FT GSFFGAAFIVLVPVALTNVPHLLGLSLSVDTAAHIEHMVFGALIVFFLIAEPHGLARLW FT SIAKEKLRIWPFPH" FT misc_feature complement(join(233957..234025,234107..234175, FT 234218..234286,234371..234439,234536..234595, FT 234614..234682,234695..234754,234773..234841, FT 234851..234904)) FT /note="9 probable transmembrane helices predicted for FT BB0230 by TMHMM2.0 at aa 27-44, 48-70, 77-96, 101-123, FT 130-149, 182-204, 233-255, 270-292 and 320-342" FT misc_feature complement(233960..234853) FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 9.6e-08" FT misc_feature complement(234647..234679) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(234993..235922) FT /transl_table=11 FT /locus_tag="BB0231" FT /product="putative branched-chain amino acid transport FT system permease" FT /db_xref="GOA:Q7WQU4" FT /db_xref="InterPro:IPR001851" FT /db_xref="UniProtKB/TrEMBL:Q7WQU4" FT /protein_id="CAE30729.1" FT /translation="MGFFLETLFGGLMSGMLYALIGLGFVLIFKASGVFNFAQGAMVLV FT AALSMARFSEWIPQWLGFENMLLANVLAFIVSALVMFVLAVAVERFVLRHLVNQEATTL FT LMATLGISYFLDGLGQIAFGSSVYSINVGMPKDPAIILETMFEGGLLINLEDLTAAVVA FT ALLVAALALFFQYTSTGRALRAVADDHQAAQSIGIPLNRIWVIVWSVAGLVALVAGIIW FT GSKFGVQFTLSTAALRALPVVILGGLTSVPGAILGGLIIGVGEKMSEVYLGSLVGGGIE FT IWFAYVLALVFLLFRPQGLFGEKIIDRV" FT misc_feature complement(235008..235913) FT /note="HMMPfam hit to PF02653, DE Branched-chain amino acid FT transport system / permease component, score 5.4e-11" FT misc_feature complement(join(235044..235112,235131..235199, FT 235257..235325,235386..235454,235554..235622, FT 235659..235727,235770..235823,235836..235895)) FT /note="8 probable transmembrane helices predicted for FT BB0231 by TMHMM2.0 at aa 10-29, 34-51, 66-88, 101-123, FT 157-179, 200-222, 242-264 and 271-293" FT CDS complement(235933..236730) FT /transl_table=11 FT /locus_tag="BB0232" FT /product="putative high-affinity branched-chain amino acid FT transport ATP-binding protein" FT /db_xref="GOA:Q7WQU3" FT /db_xref="HSSP:1G6H" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WQU3" FT /protein_id="CAE30730.1" FT /translation="MSNQTRAQRIGDVMLDMQNISLSFGGVKALTDISFNVREHEIRAI FT IGPNGAGKSSMLNVINGVYTPQNGAIMLRGEHFSRMSPRRAAEMGIARTFQNLALFKGM FT SVLDNIMTGRNLRMKSGLLAQALRLGPAEREEIAHREYVENIIDFLEIQAYRKVPVGRL FT PYGLQKRVDLGRALAMEPRLLLLDEPMAGMNIEEKQDMSRFILDVNDEFGTTIVLIEHD FT MGVVMDISDRVVVLDYGKKIGDGSPDEVRSNEDVIRAYLGVAH" FT misc_feature complement(236014..236613) FT /note="HMMPfam hit to PF00005, DE ABC transporter, score FT 3.2e-45" FT misc_feature complement(236569..236592) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(236734..238710) FT /transl_table=11 FT /locus_tag="BB0233" FT /product="putative AMP-binding enzyme" FT /db_xref="GOA:Q7WQU2" FT /db_xref="InterPro:IPR000169" FT /db_xref="UniProtKB/TrEMBL:Q7WQU2" FT /protein_id="CAE30731.1" FT /translation="MAQSLPASATVPAAAQTFPALLLEHASVRGSRPAIREKDLGIWQT FT LTWSEVAASVRLTAHGLAALGIGPGMHVAVIGENRPRLYIAMMATQALGAIPVPLYQDA FT VAQEMVYVLQDAEVSVVVVEDQEQADKMLEVREQCPALAHVVYDDPRGMRHYSDPLLRS FT FEQLEDTGRAHAASHPGFFEQAVAAVRPHDAGAMFYTSGTTGKPKGVVLTHHALIDRAR FT AVAEMENLTDQEDVLAYLPPAWIGQNMFSYTQLLVSGFTVNHPESPETVSIDMRDIGPT FT YYFAPPRVLEGLLTHVMIRMEDAGYIKRKLFHACMNLARRVGTRILDGQPVGLWDRLRY FT RLGDALIYGPLRNALGMSRVRVAYTAGEAIGPDLFVFYRSIGINLKQLYGSTETSVFVC FT VQPDGHVRDDTVGPPVEGVDIRVADNGEILVKSPGLFKEYYRNPEATAEARDDDGWFHT FT GDAGYLDSDGQLKIIDRAKDVGKLADGSLFAPKYIENKLKFFPYIKEAVAFGNGRDDVC FT AFINIDLEAVGNWAERRGLPYAGYTDLAGKDEVYALLQDCVEKVNADLAGDARLAASQV FT GRFLILHKELDPDDDELTRTRKVRRAFIGQKYGVLVDALYGGKDTQFIETEVKFEDGRV FT GRISADLKIRAARTFPAITAKAA" FT misc_feature complement(237187..238572) FT /note="HMMPfam hit to PF00501, DE AMP-binding enzyme, score FT 6.3e-81" FT misc_feature complement(238087..238122) FT /note="PS00455 Putative AMP-binding domain signature." FT misc_feature complement(238507..238539) FT /note="PS00639 Eukaryotic thiol (cysteine) proteases FT histidine active site." FT misc_feature complement(238666..238710) FT /note="Signal peptide predicted for BB0233 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.809) with cleavage site FT probability 0.746 between residues 15 and 16" FT CDS 238877..239587 FT /transl_table=11 FT /locus_tag="BB0234" FT /product="cyclic nucleotide-binding protein" FT /db_xref="GOA:Q7WQU1" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WQU1" FT /protein_id="CAE30732.1" FT /translation="MQLADSLYLAAAWFRVLDAAQKLRVERDIAVQQVQAGTIIERKGE FT LAQVWIGVLSGLVKVSVGNAEGKVASLTGVPAGGWIGEGSLLKREVRKYDVVALRDSVV FT ARLPAGTFDWLLDTSIPFNRYLLHQLNERVAQFIGKAEYDRLLDPDARVARCLAELFNP FT LLYPGMGMRLTITQEEVGYLARVSRQRANQALRKLEEAGLLQVEYGAVRVLDLDGLKGY FT GADTDTAGALDDAG" FT misc_feature 238958..239239 FT /note="HMMPfam hit to PF00027, DE Cyclic nucleotide-binding FT domain, score 5.6e-10" FT misc_feature 239399..239464 FT /note="Predicted helix-turn-helix motif with score FT 1258.000, SD 3.47 at aa 175-196, sequence FT ITQEEVGYLARVSRQRANQALR" FT CDS complement(239594..240229) FT /transl_table=11 FT /locus_tag="BB0235" FT /product="probable transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP0564" FT /db_xref="GOA:Q7WQU0" FT /db_xref="InterPro:IPR001123" FT /db_xref="UniProtKB/TrEMBL:Q7WQU0" FT /protein_id="CAE30733.1" FT /translation="MFTLSVPAYVTAWASGAATGLGLFAVVGAQSAFILRQGLMRAHLL FT SILAVCALIDAVFIFGSVWGLQTLTGWFPWLTQAILWFGVAFLAWYALQSARRALRSDG FT GLEVARQAIPSRGAALLGAIGFSLLNPHFWLDMMVVGSLAHGFADARLAFAAGALTASV FT VWLAVLGVGSRLFAPLFSSPRAWRVLDGLIAAVMALLAARLALGGLAG" FT misc_feature complement(join(239609..239677,239714..239782, FT 239825..239893,239951..240019,240032..240100, FT 240134..240202)) FT /note="6 probable transmembrane helices predicted for FT BB0235 by TMHMM2.0 at aa 10-32, 44-66, 71-93, 113-135, FT 150-172 and 185-207" FT misc_feature complement(239690..240010) FT /note="HMMPfam hit to PF01810, DE LysE type translocator, FT score 8.1e-18" FT misc_feature complement(240143..240229) FT /note="Signal peptide predicted for BB0235 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.835) with cleavage site FT probability 0.262 between residues 29 and 30" FT CDS 240359..241258 FT /transl_table=11 FT /locus_tag="BB0236" FT /product="probable LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0563" FT /db_xref="GOA:Q7WQT9" FT /db_xref="InterPro:IPR017685" FT /db_xref="UniProtKB/TrEMBL:Q7WQT9" FT /protein_id="CAE30734.1" FT /translation="MKLDHGNLRALAAVVREGSFERAAAALSVTPSAVSQRVKALEDRM FT GRLLVQRTVPARATDDGQVLVQLAEQAALLEHDALNRLGVAEDEVPHASIPVAVNHDSL FT ETWFVDAAVRFAARSRATLDLQSEDQDHTAALLRKGAVLGAVTTLADPVQGCRIHALGS FT MRYVACCTPTFHQRYFAQGVSARTLASAPVLVFNRKDALQARYAHRIIGRAAWEPPVWW FT LPSSRAFVQATLGGLGWTMNPLPLVQAELDAGQLVPLRARAWEDVPLYWQHWRVNSQAM FT EALTDAVLAAARALVRRR" FT misc_feature 240365..240547 FT /note="HMMPfam hit to PF00126, DE Bacterial regulatory FT helix-turn-helix protein, lysR family, score 4.1e-13" FT misc_feature 240410..240475 FT /note="Predicted helix-turn-helix motif with score FT 1673.000, SD 4.89 at aa 18-39, sequence FT GSFERAAAALSVTPSAVSQRVK" FT misc_feature 240413..240505 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 240620..241237 FT /note="HMMPfam hit to PF03466, DE LysR substrate binding FT domain, score 0.00064" FT CDS 241354..241845 FT /transl_table=11 FT /locus_tag="BB0237" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0562" FT /db_xref="InterPro:IPR007410" FT /db_xref="UniProtKB/TrEMBL:Q7WQT8" FT /protein_id="CAE30735.1" FT /translation="MNIRKWGVGAVLGLSVATTAWAADFKVGQVEVDDLWVRASAPGQA FT NGAGYMEIENDAKAADRLVSVSSPAAERVELHNVVTENGVAQMRQVDGVAVPADGKARL FT APGGYHVMFLKLKAPFAEGGEVPATLKFEQAGEVAVKFKVKPLGHNPGMAGHDHGHMKH FT " FT misc_feature 241354..241419 FT /note="Signal peptide predicted for BB0237 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 22 and 23" FT CDS complement(241892..242857) FT /transl_table=11 FT /locus_tag="BB0238" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0561" FT /db_xref="GOA:Q7WQT7" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7WQT7" FT /protein_id="CAE30736.1" FT /translation="MHKHAKRLLALAALTFAAGAAAQNWPSQPLRWIVPYPAGGGTDVV FT ARTVAGSLEKPLGQTIVVENRPGAATIIGATAIAQADPAGYVVGTADSGTLAFNPSLYA FT KLSYDPAKFTYIGGIARFPLMLAVNVNSPYKSVEDVLQAARKEPAKLTAASAGAGSPHH FT LALELFKQRANVDVLHVPYKGAAPAIQDLLGGQVDMMFIDLAAGLPNIKAGKLRVLGTA FT TPERLAVLPDAPTMAEQGVADFTAYAWQGLVGPAGMPEAAVKKLGGELEQSLKSPAVSQ FT KLLDMGVMPMPMTPQDFKAYAEKERAAWADVIKKANIRLE" FT misc_feature complement(241904..242725) FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 1.5e-92" FT misc_feature complement(242792..242857) FT /note="Signal peptide predicted for BB0238 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.898 between residues 22 and 23" FT CDS complement(243015..243767) FT /transl_table=11 FT /locus_tag="BB0239" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0560" FT /db_xref="HSSP:1B54" FT /db_xref="InterPro:IPR011078" FT /db_xref="UniProtKB/TrEMBL:Q7WQT6" FT /protein_id="CAE30737.1" FT /translation="MAAQRRGAYERYRMTEVDSMPHRLAAIQARIKAACERSARPPESV FT ALLPVSKTFPVEAIRHAAALGLRRFGENKTQEIRHKAPELADLDLQWVMIGHLQTNKAK FT DVARDVAEVQSLDRLELADALQRRLEMEARSLDVLVQVKTSPEPSKYGLAPELLPGFLR FT TLVSDFPALRVQGLMTMAVNDEDPQAVRACFRLLRELRDRARDSVPGVALDRLSMGMSG FT DFEIAIEEGSTEIRIGSALFGARPASAP" FT misc_feature complement(243030..243704) FT /note="HMMPfam hit to PF01168, DE Uncharacterized protein FT family UPF0001, score 2e-58" FT CDS 243970..245211 FT /transl_table=11 FT /locus_tag="BB0240" FT /product="probable aminotransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0559" FT /db_xref="GOA:Q7WQT5" FT /db_xref="InterPro:IPR015421" FT /db_xref="UniProtKB/TrEMBL:Q7WQT5" FT /protein_id="CAE30738.1" FT /translation="MPLAAPDYAFAAPFQHPPASPIRSLMPYAMRPGTISLAGGYPAQE FT LFDVEGLAAASRQVLERLGACLQYSNIDGQASLRHELARLSAARGLHCDADTELAVTGG FT SQQALALLARVMLQPGDAAVIETPAFPNSVQALRYTGAAVHTVPSGPSGIDLDALDALA FT ARVRPKMVCVVASFSNPCGATISRERRLRLLELAVRHRFLIVEDDPYGELRFAGETVPP FT IAALAEGQARHWAVYISSMSKTMAPALRIGWVVAPAEVRRRVVGAKAADDMACSAWTQE FT MVAQYLADGRYAQHVPRIRAAYGARCDAMAAALERELGERVVFRKPEGGMFFWARLNGA FT IDATRLLPYAIEHEVVYVPGKAFYADPAQADVNALRMSFATMNEAQIAQGIVRLGRALQ FT ACEANAPVSISLAA" FT misc_feature 244216..245163 FT /note="HMMPfam hit to PF00155, DE Aminotransferase class I FT and II, score 3.9e-08" FT CDS 245325..246341 FT /transl_table=11 FT /locus_tag="BB0241" FT /product="amino acid-binding periplasmic protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0558" FT /db_xref="GOA:Q7WQT4" FT /db_xref="InterPro:IPR018087" FT /db_xref="UniProtKB/TrEMBL:Q7WQT4" FT /protein_id="CAE30739.1" FT /translation="MKIAQGLAAAALLAGMVAGAQGATLDVVKKRGTVVCGTTTGFAGF FT SAPDKQGTWRGLDVDLCRAVAAAVFGDASKIKVVPLNSQQRFTALQSGEVDVLTRNTTV FT TQQRDTALGIIHAGINFYDGQGFMVPKSLGVKSAKELNGATICLQTGTSNENTLADWAR FT ANQVSYKPVVIETFNEVVNAFASGRCDVFSTDASGLASIRISRLEKPDDYVVLPEIISK FT EPLGPFVRQGDDAWLNIVRWSLSAMIEAEEYGVTTANVDEQLKSENPNVRRILGVTPGA FT GANLGLDEKWAYNIIKQVGNYGESFERNVGQGSPLKIQRGLNAQWTQGGLMYALPIR" FT misc_feature 245325..245390 FT /note="Signal peptide predicted for BB0241 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.790 between residues 22 and 23" FT misc_feature 245424..246113 FT /note="HMMPfam hit to PF00497, DE Bacterial extracellular FT solute-binding proteins, family 3, score 1.9e-33" FT misc_feature 245490..245531 FT /note="PS01039 Bacterial extracellular solute-binding FT proteins, family 3 signature." FT misc_feature 245838..245867 FT /note="PS00659 Glycosyl hydrolases family 5 signature." FT CDS complement(246376..246852) FT /transl_table=11 FT /locus_tag="BB0242" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0557" FT /db_xref="UniProtKB/TrEMBL:Q7WQT3" FT /protein_id="CAE30740.1" FT /translation="MNNLFAAPTPEEHAALLQEIGPLPLSGQAWPDWVRILAWIVLAVI FT GVQIVTTAIGLPPGQVNPVLAGTIILCFLGLALVSWHMQISVTRIDESGLRQTWITRRE FT VAWQDIQFAKFVPLLFSKRLVVFTRHGRPIVFQGGTRDLQVAFAKISLLYRRKR" FT misc_feature complement(join(246610..246678,246688..246756)) FT /note="2 probable transmembrane helices predicted for FT BB0242 by TMHMM2.0 at aa 33-55 and 59-81" FT CDS complement(246995..247903) FT /transl_table=11 FT /gene="hmgcL" FT /locus_tag="BB0243" FT /product="hydroxymethylglutaryl-CoA lyase" FT /EC_number="4.1.3.4" FT /note="ortholog of Bordetella pertussis (BX470248) BP0556" FT /db_xref="GOA:Q7WQT2" FT /db_xref="InterPro:IPR000891" FT /db_xref="UniProtKB/TrEMBL:Q7WQT2" FT /protein_id="CAE30741.1" FT /translation="MSQPSRVKIVEVSPRDGLQNEKEFIATDIKVELVDRLSAAGFQNV FT EAASFVSPKWVPQMADGAEVMARIARRPGTIYSVLTPNMKGLEGALAARADEIVIFGAA FT SEAFSQKNINCSIAESIARFEPVAAAARQAGVRVRGSISCALGCPYQGEVPVEAVVDVA FT RRFLALGCDEIDVADTIGVGTPRRVREVMDAVTRVVDPARVSGHFHDTYGQALANILAA FT LETGIAIFHASASGLGGCPYAKGATGNVATEDVLYMLRGLDIETGIDFDAVVDIGQWIS FT GHLQRKGSSRAGNAVAAKRAA" FT misc_feature complement(247040..247867) FT /note="HMMPfam hit to PF00682, DE HMGL-like, score 1.1e-74" FT CDS complement(248017..249129) FT /transl_table=11 FT /gene="smf" FT /locus_tag="BB0244" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0555" FT /db_xref="GOA:Q7WQT1" FT /db_xref="InterPro:IPR003488" FT /db_xref="UniProtKB/TrEMBL:Q7WQT1" FT /protein_id="CAE30742.1" FT /translation="MPLTHTRAELSAWLRLSQEPGVGPAAAYALLAALGMPEQIYAQGS FT ATLARHVPQDVARQLRAPLSDEAAALIEKTLQWAEQPGHHILTLADPAYPQQLLTIADP FT PILLYVNGDPACLRRPAMAVVGARNATPGGQDNARAFARHLAGQGWCIVSGLALGIDAA FT AHEGALLAGAQGAGTVAVMGTGIDRIYPAAHRDLAHRIVQHGALVSELPLGTGAQRHHF FT PRRNRLVAGLARGVLVVEAARQSGSLITARLAGENGREVFAIPGSIHSPLSRGCHALIR FT QGAKLVETAQDIADELGGAGPAASARTAPPDRPAPPHPLLDALGFDPLHLDALQARTGM FT DAASLNAQLLELELDGRVARVEGGRFQRLR" FT misc_feature complement(248266..248898) FT /note="HMMPfam hit to PF02481, DE SMF family, score FT 5.8e-96" FT CDS complement(249230..249763) FT /transl_table=11 FT /gene="lrp" FT /gene_synonym="alsB" FT /gene_synonym="livR" FT /gene_synonym="ihb" FT /gene_synonym="oppI" FT /locus_tag="BB0245" FT /product="leucine-responsive regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0554" FT /db_xref="GOA:Q7WCK3" FT /db_xref="InterPro:IPR019888" FT /db_xref="UniProtKB/TrEMBL:Q7WCK3" FT /protein_id="CAE30743.1" FT /translation="MHEYANQFEQHERKLPMQLDAIDRRILDILQTEGRLSNQDLADRV FT ALSPSACLRRVRALEDGGVIQGYRAVLDPRCLGLDFEAIVHVSLDQSQAGWHEAFVARL FT AGLQEVRQASIVTGSSNYVLQVRTRDLAAFSAFVVDKLNGIAGVREIHSHIVMRKVKDC FT GGVLPVDPAGLAGP" FT misc_feature complement(249326..249637) FT /note="HMMPfam hit to PF01037, DE AsnC family, score FT 5.1e-30" FT misc_feature complement(249575..249655) FT /note="PS00519 Bacterial regulatory proteins, asnC family FT signature." FT misc_feature complement(249593..249658) FT /note="Predicted helix-turn-helix motif with score FT 1211.000, SD 3.31 at aa 36-57, sequence FT LSNQDLADRVALSPSACLRRVR" FT CDS 249852..251102 FT /transl_table=11 FT /locus_tag="BB0246" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0553" FT /db_xref="GOA:Q7WQT0" FT /db_xref="InterPro:IPR015422" FT /db_xref="UniProtKB/TrEMBL:Q7WQT0" FT /protein_id="CAE30744.1" FT /translation="MTTRQACLEADRRDPLAAFKDEFELPAGLIYLDGNSLGALPRGAA FT ARAAQVIGQEWGQGLIRSWNTAGWFELPARLGNKLAGLIGAGQDEVVMTDSTSLNIFKA FT LAAALRLAQRAAPQRKVIVSERDNFPTDLYMIQGMIDLLRQGYELRLVDAGLSLEQALD FT DDVAVVLLSHVNYRTGAMHDMAAVSRQAHARGALIIWDLAHAAGAVPVALDADGADFAV FT GCTYKYLNGGPGSPAFIWVAPRHRDDFWQPLSGWWGHRQPFEMADTYVPAQGIRRYLCG FT TQPIVSLATAECGLDIALRADIAQVRAKSLALGDLFIALVESRCADHPLTLATPREHAR FT RGSHVSFLHPQGYAVMQALIARGVIGDYREPELLRFGLTPLYLSHADIWDAVEILREVL FT DTRAWDRPQYRERAAVT" FT misc_feature 250584..250652 FT /note="PS00179 Aminoacyl-transfer RNA synthetases class-II FT signature 1." FT CDS 251204..251716 FT /transl_table=11 FT /gene="def" FT /gene_synonym="fms" FT /locus_tag="BB0247" FT /product="polypeptide deformylase" FT /EC_number="3.5.1.31" FT /note="ortholog of Bordetella pertussis (BX470248) BP0552" FT /db_xref="GOA:Q7WQS9" FT /db_xref="InterPro:IPR000181" FT /db_xref="UniProtKB/Swiss-Prot:Q7WQS9" FT /protein_id="CAE30745.1" FT /translation="MALLSILRYPDPRLHKTAKPVAVVDDRIRQLVRDMADTMYDAPGV FT GLAATQVDVHERVVVIDVSEEGNDLRVLINPEITWKSDERQTYEEGCLSVPGIYDEVER FT AARIRCKALDQQGQPYEFEADGLLAVCVQHEIDHLDGKVFVEYLSNLKQNRIKTKLKKA FT EREAERA" FT misc_feature 251207..251677 FT /note="HMMPfam hit to PF01327, DE Polypeptide deformylase, FT score 1.7e-70" FT CDS 251782..252720 FT /transl_table=11 FT /gene="fmt" FT /locus_tag="BB0248" FT /product="methionyl-tRNA formyltransferase" FT /EC_number="2.1.2.9" FT /note="ortholog of Bordetella pertussis (BX470248) BP0551" FT /db_xref="GOA:Q7WQS8" FT /db_xref="InterPro:IPR015518" FT /db_xref="UniProtKB/Swiss-Prot:Q7WQS8" FT /protein_id="CAE30746.1" FT /translation="MRLVFAGTPEFARIALDALLAAGHDVPLVLTQPDRPAGRGLKLTP FT SPVKQAALAAGIEVAQPRSLRLDGRYPDEAAAARAQLERVAPDVMVVAAYGLILPQWTL FT DLPRLGCLNIHASLLPRWRGAAPIQRAIEAGDAETGVTIMQMDAGLDTGDMLLERAVPI FT GAQQTAAQLHDELALAGGQAIVDALAALGQGGLAPRRQPDAGVTYAAKLDKAEAALDCS FT LPAAVLARRVRAFNPVPGATIRLPGLDDPVKVWRAQALEQAAGGPPGAVLRADAQGIDI FT ATGQGVLRLLELQKAGGKRQPVDVFVRGWQP" FT misc_feature 251782..252345 FT /note="HMMPfam hit to PF00551, DE Formyl transferase, score FT 1.4e-52" FT misc_feature 252415..252714 FT /note="HMMPfam hit to PF02911, DE Formyl transferase, FT C-terminal domain, score 2.6e-25" FT CDS complement(252743..253369) FT /transl_table=11 FT /locus_tag="BB0249" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0550" FT /db_xref="GOA:Q7WQS7" FT /db_xref="InterPro:IPR011576" FT /db_xref="UniProtKB/TrEMBL:Q7WQS7" FT /protein_id="CAE30747.1" FT /translation="MSSDPTHRITDLDTLQARYGTPAPNSLTKEVDYLHPHYRAFVETA FT PFVVLATSGPQGLDTSPRGDGPGFVVIEDDRTLLLPDRRGNNRIDSLRNIVADPRVALL FT FLVPGVGETLRVNGQAEISVEPALLARFAVDGKPPRSVLRVRVETVFFQCSRAIVRSAL FT WNPDARVDRASLPSAGQILGALSAGTLDGERYDRELPERVRATLY" FT CDS complement(253366..254022) FT /transl_table=11 FT /locus_tag="BB0250" FT /product="probable haloacid dehalogenase-like hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0549" FT /db_xref="GOA:Q7WQS6" FT /db_xref="InterPro:IPR005834" FT /db_xref="UniProtKB/TrEMBL:Q7WQS6" FT /protein_id="CAE30748.1" FT /translation="MKYRLAAFDFDGTLADTLPWFESVMDGVADKYGFRKASSADKAQL FT RHRSTREIMAFLEVPVWKLPAIMAHVRQLMREIDPAVRMFAGVPAALAQLKAAGLRLAV FT CSSNSLDNVRRVLGPQTGALIDDYECGADLFGKPAKLARLMARHGVERTRCILIGDEMR FT DIDAARKAGVMAGSVAWGYNHVDALRARAPDEIFEQVTDLAAVLAPGFPSFPPTP" FT misc_feature complement(253480..254016) FT /note="HMMPfam hit to PF00702, DE haloacid FT dehalogenase-like hydrolase, score 1.7e-21" FT CDS complement(254019..254621) FT /transl_table=11 FT /locus_tag="BB0251" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0548" FT /db_xref="UniProtKB/TrEMBL:Q7WQS5" FT /protein_id="CAE30749.1" FT /translation="MTHAMPTQPAAPRTTACLLRDYFRAKDENRPLYMARAFAPDAVLK FT MALRTQAIAFPPESHGLAAIADTLSRKFGQTYDNVYTFYLAHPGEHAVLPEFSCDWMVG FT MMDKASGEVRVGCGSYDWVFQAEPHLVKRLTITIESMLTLPADTAGPVFGWLTALPYPW FT TDAQRVVASAPPIESLAPIMYWLRRDVRRADPTGGMA" FT CDS complement(254628..255254) FT /transl_table=11 FT /locus_tag="BB0252" FT /product="putative lysine decarboxylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0547" FT /db_xref="InterPro:IPR005269" FT /db_xref="UniProtKB/TrEMBL:Q7WQS4" FT /protein_id="CAE30750.1" FT /translation="MQLVTSAWTLERVMKIQNICVYCGSNSGRQPEYIEHAQGFARELV FT KRGLGLVYGGASVGIMGAVADTVMAEGGRVIGIIPEALMKKELAHRGLTELHVVQSMHE FT RKTLMAQKADGFVALPGGAGTLEEIFEIWTWAQLGMHQKPCGLLNIAGYYDLLGQFLNH FT TVDEAFMRPQHRAMLAIDHDPAALLDHFASYVAPTVSKWIAPGEH" FT misc_feature complement(254673..255074) FT /note="HMMPfam hit to PF03641, DE Lysine decarboxylase FT family, score 1.5e-59" FT CDS 255396..255965 FT /transl_table=11 FT /locus_tag="BB0253" FT /product="bacterioferritin" FT /note="ortholog of Bordetella pertussis (BX470248) BP0546" FT /db_xref="GOA:Q7WQS3" FT /db_xref="HSSP:1NF6" FT /db_xref="InterPro:IPR009040" FT /db_xref="UniProtKB/TrEMBL:Q7WQS3" FT /protein_id="CAE30751.1" FT /translation="MSSILGVSDMEQSATQPHRAFAVDVKAIRAKARRDIESGAVTEGY FT RADRATVLRLLNEALATEVVCWLRYKRHAFMARGLSAEPVAAEFAEHAAEEQGHADRLA FT ERIVQLGGEPDLSPVGLLERSHAEYVEGKDLKDMIKENLIAERIAIDSYRQMVDYVGEA FT DPTTRRLLEDILAMEEEHADDLSDLL" FT misc_feature 255552..255959 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00210, DE Ferritin-like domain, FT score 8.3e-19" FT CDS complement(256036..257355) FT /transl_table=11 FT /locus_tag="BB0254" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0545" FT /db_xref="GOA:Q7WQS2" FT /db_xref="InterPro:IPR013848" FT /db_xref="UniProtKB/Swiss-Prot:Q7WQS2" FT /protein_id="CAE30752.1" FT /translation="MSSPKVGFVSLGRPKALVDSERILTQLRTEGYEVTPEYNDADVVV FT VNTCGFIDSAKAESLEAIGEAIAENGKVIVTGCMGVEESVIRQVHPSVLAVTGPQQYEE FT VVRAVHGVAPPRQDHNPYLDLVPPQGVKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDL FT VSRPVGDVLSEAERLVRAGVKELLVISQDTSAYGVDIKYRSGFWNGRPVKTRMTELCAA FT LSELGVWTRLHYVYPYPHVDEVIGLMADGKVLPYLDIPFQHASPRILRAMKRPAFEDKT FT LARIKRWREECPDLTLRSTFIVGFPGETEEDFQYLLDWMSEAQLDRVGCFQYSPVEGAP FT ANTLDNPVPDEVKQERWERFMEHQQAISTARLSTRVGREIDVLIDSVDEEGAVGRSSAD FT APEIDGCVYVDSEQPLKAGDMVRVRVTDSDEYDLWGERIA" FT misc_feature complement(256873..256935) FT /note="PS01278 Uncharacterized protein family UPF0004 FT signature." FT misc_feature complement(257062..257343) FT /note="HMMPfam hit to PF00919, DE Uncharacterized protein FT family UPF0004, score 8.1e-34" FT CDS complement(257463..257654) FT /transl_table=11 FT /locus_tag="BB0255" FT /product="putative 4-oxalocrotonate tautomerase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0544" FT /db_xref="GOA:Q7WQS1" FT /db_xref="InterPro:IPR004370" FT /db_xref="UniProtKB/TrEMBL:Q7WQS1" FT /protein_id="CAE30753.1" FT /translation="MPTVRVELSPGRSAEQKTRYMQEVTRLTVEILKCPVESVDVIFIE FT IPPTEWAHGGKFYAQPPA" FT CDS 257906..259279 FT /transl_table=11 FT /locus_tag="BB0256" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0543" FT /db_xref="GOA:Q7WQS0" FT /db_xref="InterPro:IPR003042" FT /db_xref="UniProtKB/TrEMBL:Q7WQS0" FT /protein_id="CAE30754.1" FT /translation="MDRPAHRATANPPLRRGGGGAGAMNPDRLLGEPLRLPDSLWAATA FT PAAPALPSLDGRHVADVLIIGAGFTGLSAAIRLCREGRRVIVLDAAEPGWGASGRNNGQ FT VIAGLKQDPEVIETLYPGEAGRRLVRFGSEAPGVVFRLIDEFGIDCAAGNKGWIQPAFT FT GSGLRAVERRCQAWGERGVATRLLQADELARLLGTPRYRLGWLDPRGGHVQPLAYARGL FT ARVALSLGATIFGGARAEALRREAGQWLARCQAGEARAPSVIVATGGYADRLVPGLRTS FT IVPVRTAQVATRVLPEAMRREILPQGHVSSDTRQLLTSFRLSPDGRLVMGGAGATAGLE FT HARIVPFLHRAGAELFAHLGKLDWEYHWSGYFAVTTDHLPHVHEPAAGMHVSLGCNGRG FT IAISTALGIELAERVLGAPAESLSVPVSDLRSVRLHGFRHLGVAAATRYKRLQDRLAM" FT CDS 259350..260345 FT /transl_table=11 FT /locus_tag="BB0257" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0542" FT /db_xref="GOA:Q7WQR9" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7WQR9" FT /protein_id="CAE30755.1" FT /translation="MKGYARENRRRTLLAAALAGCLLAGGTVHADESGADKRPIRLIVG FT FSAGGYTDVIARILAEQLGQSLNRSVIVENRAGANGAIGATAVARSAKDGATVLLSPPG FT LITNTLISPELSYSIQDFAPVARVTSLPNVLVVSANSKYRSLAELLDGARKADGKLTYG FT SGGVGSSNHLSMALLMRQAQVQMLHVPYKGSSLAETDVMAGHVESMFSGAASAIPHVNG FT GRFHALAVSGDKRIGALPDVPTVAQAGVPGYSHGTWLGLFVAAGTPAQAVAGLNQAVNK FT VMADARVQARMTDLGADAFQANTVDEFTAFVQSDLAAQKTLIGNASLSGN" FT misc_feature 259350..259439 FT /note="Signal peptide predicted for BB0257 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 30 and 31" FT misc_feature 259512..260333 FT /note="HMMPfam hit to PF03401, DE Uncharacterized protein FT family, UPF0065, score 4.4e-85" FT CDS 260430..261104 FT /transl_table=11 FT /locus_tag="BB0258" FT /product="probable transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0541" FT /db_xref="GOA:Q7WQR8" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WQR8" FT /protein_id="CAE30756.1" FT /translation="MNLVAPMPETAQRKVAGTATERAYGELRKRILEGSLAEGAPIRQD FT EVAADLGISKIPVREALVRLQSEGLVVFTPNAGATVAVLTAADYVEMLDLRLAIECRAL FT ELAVPNMAPSDLAQARRLLDAYSRHENASEWSELNAQFHDCLYAPANRPRLLAMIRSVR FT DHMGKLMRLRVTEAAGHDRSHQEHLKILAACEEGNAARAVALLRKHIEHTQREVQAYFR FT KA" FT misc_feature 260496..260672 FT /note="HMMPfam hit to PF00392, DE Bacterial regulatory FT proteins, gntR family, score 1.3e-05" FT CDS complement(261137..261985) FT /transl_table=11 FT /locus_tag="BB0259" FT /product="putative dioxygenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0566" FT /db_xref="GOA:Q7WQR7" FT /db_xref="UniProtKB/TrEMBL:Q7WQR7" FT /protein_id="CAE30757.1" FT /translation="MTARVGRVDHPVVAVHDLDRTSQQYRKLGFVVPPSGKHQEWGTEN FT LCIMFPGDYLEIRGIGDPNRFLAGVDKFLAKGEGLYSVAFNAASAQESYQAGLAAGLEI FT EPPRHLNRKLVLEDRTLDLHFETVMLGHDLYPGLTHANLCQHLTADTLRQPGWTDHPNG FT VVAFGRLVGVVSDFDAAAAAYTRLIGAENVTRGDDHILLDFGAGADIELIGPAEAQRRG FT DAQPQLGDAYLASATLLVKDAAATAALFEAGGVRFTRQPGGELKVDPADASGAHLYFKQ FT A" FT CDS 262119..262895 FT /transl_table=11 FT /locus_tag="BB0260" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0567" FT /db_xref="GOA:Q7WQR6" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/Swiss-Prot:Q7WQR6" FT /protein_id="CAE30758.1" FT /translation="MNTPLRVGIVGCGVLANAMAGHLARQPRPVEIVGCLVRDPGRARG FT ALPCHGSWEALLAQRPEVVVECAGQAALAQYAQVILAAGVDLVPASVGALADDALRGAL FT LEAAAAAGARIRIPSGAMVGIDGLAAARHVGVAEVLYRGTMPPVALQRYVSGPLPERGL FT AFAGSAREAVARFPKNANLTGTIALAGIGFDRTRVEMLIDPDATANVHELLARGEFGDF FT HARVSGLRISESSPSSRIVAGSLAQAALGSGFLALS" FT misc_feature 262119..262166 FT /note="PS00443 Glutamine amidotransferases class-II active FT site." FT misc_feature 262131..262865 FT /note="HMMPfam hit to PF01958, DE Domain of unknown FT function DUF108, score 3.5e-32" FT CDS complement(262941..263570) FT /transl_table=11 FT /locus_tag="BB0261" FT /product="putative amino acid efflux protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0568" FT /db_xref="GOA:Q7WQR5" FT /db_xref="InterPro:IPR001123" FT /db_xref="UniProtKB/TrEMBL:Q7WQR5" FT /protein_id="CAE30759.1" FT /translation="MTLATLALFVLASGLIIVTPGPTVLLALSNGSRHGVRRACWGMAG FT AVLADLVLVAAVAGGLGMLLAASEPAFQALKWIGAGYLAYLGWRLLRSDAALVLPALAA FT GGGDSGAGALFSRSFLVALTNPKALLFMSAFLPQFIDPAAALAPQYGALALVLAVLNLA FT AMLGYAALGARLVRVLRTGGLRWINRLCGGMLVLLAGTVALYRRAG" FT misc_feature complement(join(262956..263015,263052..263120, FT 263163..263231,263373..263441,263484..263552)) FT /note="5 probable transmembrane helices predicted for FT BB0261 by TMHMM2.0 at aa 7-29, 44-66, 114-136, 151-173 and FT 186-205" FT misc_feature complement(263043..263366) FT /note="HMMPfam hit to PF01810, DE LysE type translocator, FT score 3.3e-11" FT misc_feature complement(263490..263570) FT /note="Signal peptide predicted for BB0261 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.963) with cleavage site FT probability 0.729 between residues 27 and 28" FT CDS 263678..265012 FT /transl_table=11 FT /locus_tag="BB0262" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0569" FT /db_xref="GOA:Q7WQR4" FT /db_xref="InterPro:IPR018314" FT /db_xref="UniProtKB/TrEMBL:Q7WQR4" FT /protein_id="CAE30760.1" FT /translation="MPSPVDSSVLAPPLSAVLLGAAAAVQAVRKGRSLTDALAETPPAL FT RPAVQAISFHAMRQLGWADAVAETLVRRSPGPLFDALLRVALSLLRAAPGAAAQPGAPQ FT YAPHTVVDQAVTAAAGQRKLAAYKGLLNASLRRFLREREALQDSVAERPAARWNHPSWW FT VELLERAYPEQWRGILAGANVPAPLTLRVNRRRATVEQARQALAQAGVAAAPVGDAGLV FT LAEPRPVPQLPGYDAGWWSVQDAGAQLAAPLLAPADGMRVLDACAAPGGKTAHLLELAD FT IDLLALDADAQRLERVDQNLERLGLRTPRVRLAAADASDLDAWWDGRPFDAVLADVPCT FT ASGIVRRHPDIRWLRRAEDVPRTAALQARIADALWRTVAPGGRLLYVTCSVFPAEGREQ FT AEAFARRHADAAPLDAPGQLLPVAIDATPQAQHDGFFYALFAKRT" FT misc_feature 263678..263749 FT /note="Signal peptide predicted for BB0262 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.949) with cleavage site FT probability 0.301 between residues 24 and 25" FT misc_feature 264209..265000 FT /note="HMMPfam hit to PF01189, DE NOL1/NOP2/sun family, FT score 6.3e-64" FT misc_feature 264665..264700 FT /note="PS01153 NOL1/NOP2/sun family signature." FT CDS 265031..265642 FT /transl_table=11 FT /locus_tag="BB0263" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0570" FT /db_xref="UniProtKB/TrEMBL:Q7WQR3" FT /protein_id="CAE30761.1" FT /translation="MLLRICRMSMILRLFVALLLVFGSFSPITSGLAHAADPHVQRIEP FT LVRDGKLELSADIHFELNDQLRDAAQRGVPLYFTADLQITRSRWWWFDHTLVDKSITWR FT IAYNALTRQWRAGAGELSLPVASLDDAMDLVRHIRNWEVADASEFDPGVRYGGQLRVRL FT DTSQLARPFQVNALNSSSWSPATPWAEFSFALAEPARDPS" FT misc_feature 265031..265135 FT /note="Signal peptide predicted for BB0263 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 35 and 36" FT CDS 265639..267948 FT /transl_table=11 FT /locus_tag="BB0264" FT /product="putative two-component sensor kinase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0571" FT /db_xref="GOA:Q7WQR2" FT /db_xref="HSSP:1BXD" FT /db_xref="InterPro:IPR003660" FT /db_xref="UniProtKB/TrEMBL:Q7WQR2" FT /protein_id="CAE30762.1" FT /translation="MRMFLRLALVVGGVSGLALLGLLAWSTGNASRFARYYDTLLILNG FT IFAFALFVWVVALTVRLARQIRRRQFGARLTARFALAFALIGVVPGALIYTLSVQFMSR FT SIESWFNVRVDSALESGLNLGRAALDSQLADMDVRARAMAAELNNMSDNDIPLALTRLR FT EANGAQEATVFTGSGRILAFSTNTYGQLLPPSLPATLLNQLRLARGYSAAEADDPAIPG FT AEGGLHLRVVIPLSAPARFDGILGGSAEPRWLQLMHAVPDQIAHNANRVQQGFRDYQEL FT ALSRLGLRKLYGITLTLALLLAVFAAIAVALSLSKRLVRPLLRLAGGTQAVGVGDFRPL FT PEPPERDEVGQLTRSFNAMTRQLEEARQMVESNRRQLERSNVYLESVLSNLSSGVIAFD FT EGFRVTTVNQGAQTILQADLRSVIGRPLETVDGMLEFAQVVRQAFAAHAAVGSERLHWQ FT QQFEITPGLDETGGQPVTLLARGTHLRVDGRGNGYLVVFDDITEVISANRTVAWGEVAR FT RLAHEIKNPLTPIQLSAERLAMKLADRLQPADAQMLIRSTNTIVNQVGSLKQMVDDFRE FT YARTPPAVMQRIDLNALVADVLSLYGWDPGDGGGRGAARVLNLDVELAPGLPDIEGDPT FT QLRQVIHNLLSNARDAVAEQGGEGRVKVTTQIVQSEQPDGAQQRAVRFTVADTGPGFPP FT QVMQRAFEPYVTTKAHGTGLGLAIVRKIIEEHGGRIDLANRKEGGARISILLTRLALPS FT DTMDATAQEKDNAATQ" FT misc_feature 265639..265728 FT /note="Signal peptide predicted for BB0264 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.360 between residues 30 and 31" FT misc_feature join(265657..265716,265744..265812,265873..265941, FT 266512..266580) FT /note="4 probable transmembrane helices predicted for FT BB0264 by TMHMM2.0 at aa 7-26, 36-58, 79-101 and 292-314" FT misc_feature 266524..266733 FT /note="HMMPfam hit to PF00672, DE HAMP domain, score FT 1.3e-12" FT misc_feature 267169..267387 FT /note="HMMPfam hit to PF00512, DE His Kinase A FT (phosphoacceptor) domain, score 1.6e-08" FT misc_feature 267532..267885 FT /note="HMMPfam hit to PF02518, DE Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 5e-35" FT CDS 267959..268648 FT /transl_table=11 FT /locus_tag="BB0265" FT /product="putative two-component response regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0572" FT /db_xref="GOA:Q7WQR1" FT /db_xref="HSSP:1KRW" FT /db_xref="InterPro:IPR001789" FT /db_xref="UniProtKB/TrEMBL:Q7WQR1" FT /protein_id="CAE30763.1" FT /translation="MARILVVDDEVGIRELLSEILYDEGHTVELAENAAQARAARLRMR FT PDLVLLDIWMPDTDGVSLLKEWASQGLLDMPVIMMSGHATIDTAVEATRIGAMDFLEKP FT ITLQRLLKTIEAGLARGRAPRAAPPLAHAAATPVAVALEDELDPPQPFQAPVEAPAASN FT GQLGSISLDQPLREARDEFERIYFEYHLVRENHSMTRVSERTGLERTHLYRKLKQLGIE FT SARKRGT" FT misc_feature 267962..268324 FT /note="HMMPfam hit to PF00072, DE Response regulator FT receiver domain, score 1.9e-34" FT misc_feature 268544..268609 FT /note="Predicted helix-turn-helix motif with score FT 1397.000, SD 3.94 at aa 196-217, sequence FT HSMTRVSERTGLERTHLYRKLK" FT CDS 268645..270024 FT /transl_table=11 FT /gene="trkA" FT /locus_tag="BB0266" FT /product="Trk system potassium uptake protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0573" FT /db_xref="GOA:Q7WQR0" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7WQR0" FT /protein_id="CAE30764.1" FT /translation="MKILIMGAGRVGTSVAENLVSEQNDITVIDTDVGQLRYLQDRFDL FT RVVQGDGIQVSVLESAGADDTDLFIACAASDAANLVACKIAREVFNVPRRIARIRMPEF FT ADHPELMSDEGFAIDALISPERSVTTYLHSLIEFPEALQVVEFAGGRVSVITVRVGHGS FT PMAHHPVDELREVWPDVTARIVDVLRDGRPLHAGTGTVVAPGDEVVLAVDTRHARRAVR FT QLREAEKTVHRVMIAGGGNIGLRLARQLAEEGYSVRIIEHDAKRCEYLAAELPDNVLVL FT HGNGTDEALLERENIEDMDTWLALTSDDEDNIMSSLLAKRLGARKVIALINRQAYGELM FT QGSHIDVAVSPSQATMSELLRHVRRGDVVAVHRLRQGVAEALEAVAHGDRSTSRVVGRA FT VGKIGLPKGASIGVLVRGDEIIVPDADTEIQSDDHVIVFVPSRRQMPRVEKLFQVSASF FT F" FT misc_feature 268648..269016 FT /note="HMMPfam hit to PF02254, DE TrkA-N domain, score FT 3e-22" FT misc_feature 269059..269328 FT /note="HMMPfam hit to PF02080, DE TrkA-C domain, score FT 0.0001" FT misc_feature 269341..269697 FT /note="HMMPfam hit to PF02254, DE TrkA-N domain, score FT 2.5e-27" FT misc_feature 269740..270012 FT /note="HMMPfam hit to PF02080, DE TrkA-C domain, score FT 3.9e-11" FT CDS 270073..271542 FT /transl_table=11 FT /gene="trkH" FT /locus_tag="BB0267" FT /product="Trk system potassium uptake protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0574" FT /db_xref="GOA:Q7WQQ9" FT /db_xref="InterPro:IPR003445" FT /db_xref="UniProtKB/TrEMBL:Q7WQQ9" FT /protein_id="CAE30765.1" FT /translation="MKRLLATFYVLGLTMVVFALTMVIPLAVAYIGQDAGFTAFLEGFL FT LALGIGAGTWLATRRGRSELHARDGFLLVSTVWAALPALAAIPLLLYYDDVGIPLSFTD FT AYFEAMSGLTTTGATVLSGLDALPASINLWRATLIWIGGMGILVLAVAILPLLGVGGHQ FT VVRAETPGPMKDERLTPRIASTAKALYAVYFGFSMVCLLAYRAVGLSWFDAWCHMATTM FT GLGGFSTYDDGFAHFDSLSVELVAIVFMTISGINFATHFNALRQRNWRAYVVCPQTIPY FT LTVMLGAGLVISVFLYIKGVYGDPWEALRYGMFNTISVATTTGYANVDYASWPLFAPLT FT MLLLSAFVTSAGSTGGGIKMIRIILLVKQARNELVTMLHPHAVSPVRIGSRVVDQRVMA FT SVLAFMLVYGLSVGVLSSLLLLSGLDLITAFSAVMAMINNTGPGLGPLGPMGNFSVLND FT FQTWVCTFAMLIGRLELLTVLVLFTPLFWRK" FT misc_feature 270073..270159 FT /note="Signal peptide predicted for BB0267 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.611 between residues 29 and 30" FT misc_feature join(270097..270165,270175..270243,270280..270348, FT 270481..270549,270640..270708,270787..270855, FT 270913..270981,271078..271146,271267..271335, FT 271465..271533) FT /note="10 probable transmembrane helices predicted for FT BB0267 by TMHMM2.0 at aa 9-31, 35-57, 70-92, 137-159, FT 190-212, 239-261, 281-303, 336-358, 399-421 and 465-487" FT misc_feature 270262..271533 FT /note="HMMPfam hit to PF02386, DE Cation transport protein, FT score 7.3e-79" FT CDS 271622..272155 FT /transl_table=11 FT /locus_tag="BB0268" FT /product="probable MarR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0575" FT /db_xref="GOA:Q7WQQ8" FT /db_xref="InterPro:IPR000835" FT /db_xref="UniProtKB/TrEMBL:Q7WQQ8" FT /protein_id="CAE30766.1" FT /translation="MPEPDKQATRKKRTTSSLTDSTVFDPAKQVLWSRPGYLVRRLNQI FT HYALFYEECKTQNVTPVQYGVLTALSLSPWLDQTAIGMELGLDRTTTADVIKRLQERGL FT VERRVNPNDKRSRQAVITQEGLRIMGLLQGGMARAQQRLLEPLSPRNREIFMKLLSTLV FT DANNQYSRTALKAM" FT misc_feature 271796..272107 FT /note="HMMPfam hit to PF01047, DE MarR family, score FT 5.2e-20" FT CDS complement(272163..273158) FT /transl_table=11 FT /locus_tag="BB0269" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0576" FT /db_xref="InterPro:IPR003777" FT /db_xref="UniProtKB/TrEMBL:Q7WQQ7" FT /protein_id="CAE30767.1" FT /translation="MNALDLDVLQHARDWLASGRRVHLVTVVQTWGSAPRQAGAMLAVR FT DDGQVVGSVSGGCIEDDLIARARAGTLPERAERLTYGVTRDEATRFGLPCGGTLRLVAE FT PLAPRDAWLDEVLQAIAEHRLVRRTIDLHTGAAALEAAAPAEGPDFDGRMFRAVYGPHW FT RLLIIGANQTAQVLADIAATLDFQVIVCDPREEFHAAWHAPHATLVTTMPDDTVLEIGT FT DERTAIVALTHDPKLDDMVLLEALKSRAFYVGALGSRANQEKRRERLRLFDLGDEDIAR FT LRGPVGLPIASRTPAEIAVAVAAELVWVRNTLGDREPSGAPLPAALAPAR" FT misc_feature complement(272211..273122) FT /note="HMMPfam hit to PF02625, DE Uncharacterized BCR, FT COG1975, score 1.2e-33" FT misc_feature complement(272985..273017) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment si |