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EBI DbfetchID BX640435; SV 1; linear; genomic DNA; STD; PRO; 346259 BP. XX AC BX640435; XX DT 09-AUG-2003 (Rel. 76, Created) DT 29-JUL-2008 (Rel. 96, Last updated, Version 5) XX DE Bordetella parapertussis strain 12822, complete genome; segment 13/14 XX KW complete genome. XX OS Bordetella parapertussis OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Bordetella. XX RN [2] RP 1-346259 RA Sebaihia M.; RT ; RL Submitted (06-AUG-2003) to the EMBL/GenBank/DDBJ databases. RL Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute, RL Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail: RL ms5@sanger.ac.uk XX RN [3] RA Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E., RA Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., RA Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A., RA Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I., RA Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., RA Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., RA Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., RA Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., RA Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., RA Barrell B.G., Maskell D.J.; RT "Comparative analysis of the genome sequences of Bordetella pertussis, RT Bordetella parapertussis and Bordetella bronchiseptica"; RL Nat. Genet. 35(1):0-0(2003). XX DR EMBL-CON; BX470249. DR RFAM; RF00521; SAM_alpha. XX FH Key Location/Qualifiers FH FT source 1..346259 FT /organism="Bordetella parapertussis" FT /strain="12822" FT /mol_type="genomic DNA" FT /db_xref="taxon:519" FT CDS complement(293..937) FT /transl_table=11 FT /gene="ureG" FT /locus_tag="BPP3852" FT /product="urease accessory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3166" FT /db_xref="GOA:P0A4R8" FT /db_xref="InterPro:IPR004400" FT /db_xref="UniProtKB/Swiss-Prot:P0A4R8" FT /protein_id="CAE39135.1" FT /translation="MHDISSLTTRTKTLPPLRVGVGGPVGSGKTTLLEMVCKAMYPQFD FT LIAITNDIYTKEDQRLLTLSGALPPERILGVETGGCPHTAIREDASINLIAIDQMLEQF FT PDADIVFVESGGDNLAATFSPELSDLTLYIIDVASGEKIPRKGGPGITKSDLFIINKTD FT LAPYVGADLAVMEADTRRMRGDKPFVMCNLKTGDGLDQVIAFLKTEGLFRG" FT misc_feature complement(509..892) FT /note="HMMPfam hit to PF01495, HypB/UreG nucleotide-binding FT domain, score 4.5e-73" FT misc_feature complement(848..871) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(962..1624) FT /transl_table=11 FT /gene="ureF" FT /locus_tag="BPP3853" FT /product="urease accessory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3167" FT /db_xref="GOA:Q7W419" FT /db_xref="InterPro:IPR002639" FT /db_xref="UniProtKB/Swiss-Prot:Q7W419" FT /protein_id="CAE39136.1" FT /translation="MHLSSPALPIGGFSYSQGLEAAIELGLVHDEASTLAWIESQLVTV FT MARAEAPLWCLLFEAWRAGDDAAAHGWNQWFHASRETRELRQETEQMGRSLARLAQELG FT WGTAATRAAVAALRPATLPAVHACACAMWALPREAGLGAYVFSWLENQVAAAIKGVPLG FT QMAGQRMLERLRAGLPAVLADARARAGATPPRLDTFAPQYALVSARHETQFSRLFRS" FT misc_feature complement(1094..1546) FT /note="HMMPfam hit to PF01730, UreF, score 9.7e-74" FT CDS complement(1647..2264) FT /transl_table=11 FT /gene="ureE" FT /locus_tag="BPP3854" FT /product="urease accessory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3167A" FT /db_xref="GOA:Q7W418" FT /db_xref="HSSP:1GMV" FT /db_xref="InterPro:IPR004029" FT /db_xref="UniProtKB/Swiss-Prot:Q7W418" FT /protein_id="CAE39137.1" FT /translation="MKIANTFIKRGAAGGLDLSQAPGVTLTLAERRRSRQRLDLDEGRG FT ELGMAIERGQTLRDGDVLVAEDGTYVVVRAALEDVARVTAATPWQLARAAYHLGNRHVL FT LEIAEQHLQFEYDAVLIDMLAQLGGVTAMRLRAVFEPDVGAYGGGHRHGHDESFGDDYA FT LAQAAYHAHEAHPHAHSHAGGHGHVHSGHGHGGKHGEHDAES" FT misc_feature complement(1944..2249) FT /note="HMMPfam hit to PF02814, UreE urease accessory FT protein, score 1.7e-45" FT CDS complement(2267..3982) FT /transl_table=11 FT /gene="ureC" FT /locus_tag="BPP3855" FT /product="urease alpha subunit" FT /EC_number="3.5.1.5" FT /note="ortholog of Bordetella pertussis (BX470248) BP3168" FT /db_xref="GOA:Q7W417" FT /db_xref="HSSP:1EJX" FT /db_xref="InterPro:IPR017950" FT /db_xref="UniProtKB/Swiss-Prot:Q7W417" FT /protein_id="CAE39138.1" FT /translation="MTRISRSAYAEIYGPTVVGGVGDRVRLADTLLLAEVEKDHTIFGE FT EVKFGGGKVIRDGMGQSQRLATDCVDTVITNALIIDAVTGIVKADIGIKDGLISGIGKA FT GNPDTQPGVTIIIGASTEVVAGEGLIVTAGAIDTHIHFICPQQIEEALATGTTTMIGGG FT TGPATGSLATTSTSGPWHMAAMLQALDAFPVNVGLFGKGSSSSHGALLEQVRAGAMGLK FT IHEDWASTPASIDTCLNVAEETDIQVAIHSDTLNESGFVEDTFAAFKGRTIHSFHTEGA FT GGGHAPDIIRAAGMPNVLPASTNPTMPFTRNTIDEHLDMVMVCHHLDPSIAEDLAFAES FT RIRRETIAAEDILHDLGAFSIMSSDSQAMGRVGEIVLRTWQTAHKMKLQRGPLQGDSER FT SDNERIKRYIAKYTINPAVAHGIAHLVGSVEVGKLADLVLWKPAFFGVKVNMVLKSGMA FT VSASIGDMGASISTPQPVQIRPMWGSHGKALRTSVAFVSQVSLSNPAVSELELNKRLEA FT VRGCRGVTKHDMVRNNWLPAISVDPQTYQVYADGQLLRCEALAELPMAQRYFLF" FT misc_feature complement(2273..3580) FT /note="HMMPfam hit to PF02802, Urease alpha-subunit, FT catalytic domain, score 0" FT misc_feature complement(2969..3019) FT /note="PS00145 Urease active site." FT misc_feature complement(3548..3589) FT /note="PS01120 Urease nickel ligands signature." FT misc_feature complement(3584..3979) FT /note="HMMPfam hit to PF00449, Urease alpha-subunit, FT N-terminal domain, score 4.8e-83" FT CDS complement(3979..4287) FT /transl_table=11 FT /gene="ureB" FT /locus_tag="BPP3856" FT /product="urease beta subunit" FT /EC_number="3.5.1.5" FT /note="ortholog of Bordetella pertussis (BX470248) BP3169" FT /db_xref="GOA:P0A4R3" FT /db_xref="HSSP:1EJX" FT /db_xref="InterPro:IPR002019" FT /db_xref="UniProtKB/Swiss-Prot:P0A4R3" FT /protein_id="CAE39139.1" FT /translation="MIPGEILTEPGQIELNVGRPTLTIAVVNEGDRPIQVGSHYHFAEA FT NNALVFDRELATGYRLNIPAGNAVRFEPGMRRTVELVAVGGERRIFGFQGKVMGALK" FT misc_feature complement(3985..4284) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00699, Urease beta subunit, score FT 3.2e-60" FT CDS complement(4304..4921) FT /transl_table=11 FT /gene="ureJ" FT /locus_tag="BPP3857" FT /product="urease accessory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3170" FT /db_xref="InterPro:IPR007038" FT /db_xref="UniProtKB/TrEMBL:Q7W416" FT /protein_id="CAE39140.1" FT /translation="MKAMSKRAMLGSGAAALMLFSGAALAHPGHLGHELPGSMFAAGFW FT HPLTGFDHLLAMLAVGMWSALTHHTARQAVWLPVMFLALLFAGAMMGMAGVRLPAVEPV FT IMVSLLVLGLLVASRKAVQGWAGFALVGGFALFHGLAHGMELPGSEGALGFVAGFMLAT FT LGLHLAGLFAGFRLKHWNLWLSRALGVGIAGYGALLFVGARV" FT misc_feature complement(join(4310..4375,4397..4462,4493..4549, FT 4571..4621,4637..4702,4724..4789,4835..4900)) FT /note="7 probable transmembrane helices predicted for FT BPP3857 by TMHMM2.0 at aa 7-29, 44-66, 73-95, 100-117, FT 124-143, 153-175 and 182-204" FT misc_feature complement(4844..4921) FT /note="Signal peptide predicted for BPP3857 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 26 and 27" FT CDS complement(4966..5268) FT /transl_table=11 FT /gene="ureA" FT /locus_tag="BPP3858" FT /product="urease gamma subunit" FT /EC_number="3.5.1.5" FT /note="ortholog of Bordetella pertussis (BX470248) BP3171" FT /db_xref="GOA:P0A4U1" FT /db_xref="HSSP:1EJX" FT /db_xref="InterPro:IPR002026" FT /db_xref="UniProtKB/Swiss-Prot:P0A4U1" FT /protein_id="CAE39141.1" FT /translation="MELTPREKDKLLIFTAALLAERRRARGLKLNYPETVALITAALME FT GARDGKTVAELMSEGTRILGRDEVMEGVPEMISNIQVEVTFPDGTKLITVHNPVV" FT misc_feature complement(4972..5268) FT /note="HMMPfam hit to PF00547, Urease, gamma subunit, score FT 9e-68" FT CDS complement(5369..6223) FT /transl_table=11 FT /gene="ureD" FT /locus_tag="BPP3859" FT /product="urease accessory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3172" FT /db_xref="GOA:P0A4R6" FT /db_xref="InterPro:IPR002669" FT /db_xref="UniProtKB/Swiss-Prot:P0A4R6" FT /protein_id="CAE39142.1" FT /translation="MSETLDQWRAGLTLGFAPGHAGRTVLRERAHYGPMLVQRALYPEG FT PQVCHVAILHPPSGIAGGDALEIRVDVAGGARAALTTPGATRWYKSNGRQASQDVHLRV FT AAGGRLDWLPLESIFFEEADALARNRIQLESGAAAIGWDLIQLGRVNQSGHWSQGRLHT FT ATELYVDGRLLWVDQGLVGAQDDVRRQVSGLAGFPVHAALWSFGPRLDAEQNEELAGLM FT PWSDTLRGAATTMPYDATQSLCLVRCLGVHMEDVRAVMTDAWAYLRPRVLDTPAVVPRL FT WAT" FT misc_feature complement(5444..6076) FT /note="HMMPfam hit to PF01774, UreD urease accessory FT protein, score 5e-95" FT CDS 6805..7077 FT /transl_table=11 FT /gene="hmrR" FT /locus_tag="BPP3860" FT /product="heavy metal dependent transcription regulator FT (partial)" FT /note="ortholog of Bordetella pertussis (BX470248) BP3173" FT /db_xref="GOA:Q7W415" FT /db_xref="HSSP:1Q06" FT /db_xref="InterPro:IPR015358" FT /db_xref="UniProtKB/TrEMBL:Q7W415" FT /protein_id="CAE39143.1" FT /translation="MNIGEASKASKVSAKMIRCCEQIGLIAAAQRTASDHRAYGHADMH FT QLHFIRRTRDLGCSVAESGDLLNPWNPQSRQSADVKRLAKRTLSY" FT misc_feature 6814..6921 FT /note="HMMPfam hit to PF00376, Bacterial regulatory FT proteins, merR family, score 9.8e-05" FT CDS 7094..7432 FT /transl_table=11 FT /gene="fdx" FT /locus_tag="BPP3861" FT /product="[2Fe-2S] ferredoxin" FT /note="ortholog of Bordetella pertussis (BX470248) BP3174" FT /db_xref="GOA:Q7W414" FT /db_xref="HSSP:1I7H" FT /db_xref="InterPro:IPR018298" FT /db_xref="UniProtKB/TrEMBL:Q7W414" FT /protein_id="CAE39144.1" FT /translation="MPRITVLPHADLAPDGAVLEVPSGTSISEALLAHGIEIEHACDMS FT CACTTCHCIVREGFDSLDEARECEDDLLDRAWGLEAHSRLSCQAIVAGEDLTIEIPKYT FT VNHAKETR" FT misc_feature 7121..7372 FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain, score 4.6e-11" FT misc_feature 7217..7249 FT /note="PS00814 Adrenodoxin family, iron-sulfur binding FT region signature." FT CDS complement(7494..7901) FT /transl_table=11 FT /locus_tag="BPP3862" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3175" FT /db_xref="GOA:Q7W413" FT /db_xref="InterPro:IPR006913" FT /db_xref="UniProtKB/TrEMBL:Q7W413" FT /protein_id="CAE39145.1" FT /translation="MKVEGRCHCGAIAYEAEVEPGTITVCHCADCQMQSGSVFRANISA FT PADTFVLLQGTPKEYLKIAASGARRMHAFCGNCGGPIYSCAAENPQSYSLRVGALEQRH FT ALGRPLRQIWARRRFSWLSSLGDVEEFDGQP" FT tRNA complement(8074..8164) FT /note="tRNA Ser anticodon GGA, Cove score 75.09" FT CDS complement(8271..9071) FT /transl_table=11 FT /locus_tag="BPP3863" FT /product="probable GntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3176" FT /db_xref="GOA:Q7W412" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W412" FT /protein_id="CAE39146.1" FT /translation="MTMQHASSAGRRPAVPVYLKIRNAIRDAISNAAYAPGDLLPSETE FT LAKRYATTRATVVHAIQQLVFEGLVERKRGVGSFVAQPKLSSTVDTHRVAYFEQDAFAR FT DLTYEVIGYGKAVVEDHVRDTLRLGRGEPVYRLQRLRLLLGKPIAFELRYLPALVGARL FT TAEMLARRSVQSLLDEEVGMPITRFLNAVRVALVPAAVARHLQLEKGRPVMVRTHTFLD FT AADTPLLWGETLYREEYQINYVLTAMQAPDEAVGGRPRKGAGRA" FT misc_feature complement(8832..9011) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 4.4e-17" FT misc_feature complement(8880..8954) FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT CDS 9166..10401 FT /transl_table=11 FT /locus_tag="BPP3864" FT /product="putative methylaspartate ammonia-lyase" FT /EC_number="4.3.1.2" FT /note="ortholog of Bordetella pertussis (BX470248) BP3177" FT /db_xref="GOA:Q7W411" FT /db_xref="HSSP:1KCZ" FT /db_xref="InterPro:IPR006395" FT /db_xref="UniProtKB/TrEMBL:Q7W411" FT /protein_id="CAE39147.1" FT /translation="MKPMQQDVPPIRIEAVRVTAGIGGHWINDQMAVQTGATADGYFFE FT GPTSSTAFPAVRSPSVAYLVSLDLADGQTAHGDCTTVANAGYAGRPLPLRREDVQAVQA FT VLQESLAGRSFAGFREAAGALDAMPLADTLRLPVEYGVSQALLEAAALASRTRMVDVLC FT REFGRPGPTRGPGFAGSCGGAWEANVDKAIVRGLDMFPQSAIQSRAECERLPDYAAWIA FT GRIRKLGAAGYRPDLHFDFHSSLGRMLDNDEDRVLGYLATICERAAGLTVFFEDPMLSG FT SAAEARERMGSLRAKLDARLPNARLIADEWANGPGNVRAFAASGAAHAVQIKMPDNGSL FT LTTIDAIQGCQEHGTLAYLGGSCNETDISSRASIHVGLAFGVWRMLTKPGLGFDEGLMI FT MTNEISRTLSKR" FT misc_feature 10129..10161 FT /note="PS00626 Regulator of chromosome condensation (RCC1) FT signature 2." FT CDS 10470..11486 FT /transl_table=11 FT /locus_tag="BPP3865" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3178" FT /db_xref="GOA:Q7W410" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7W410" FT /protein_id="CAE39148.1" FT /translation="MHARLHSRGARLAARLALAALTAGAAALPQAAAAADSASFPDRPV FT TMVVPFPPGAATDIIARTVAQKLSDKWGQSVVVENRAGATGSIGSTYVARSAPDGHTLL FT VATTSSHTMGPNLSSRLPWDPVSSFAPVTLLAWAPNVLEVNPSVPAKSVQELIALLKKN FT PGKYTFASSGTGSSIHLAGEMFKEQAGVDMVHVPYKGAAPAVADLLGGQVDIMFDTVAL FT SLPHLKAGKLRPLAVTTTRRSSSLPDVPTMREAGLPGYEMAAWIGLLAPAGTPEAVVAR FT IQADVGAVLKMPDVKEKLQAQGTDISGMPGSEFAVLIKDELGRYGQVMKQAGIQPGD" FT misc_feature 10470..10571 FT /note="Signal peptide predicted for BPP3865 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.931 between residues 34 and 35" FT misc_feature 10503..10571 FT /note="1 probable transmembrane helix predicted for BPP3865 FT by TMHMM2.0 at aa 12-34" FT misc_feature 10647..11471 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 3.1e-115" FT CDS 11483..12868 FT /transl_table=11 FT /locus_tag="BPP3866" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3179" FT /db_xref="GOA:Q7W409" FT /db_xref="InterPro:IPR005656" FT /db_xref="UniProtKB/TrEMBL:Q7W409" FT /protein_id="CAE39149.1" FT /translation="MRGTVMPAAHATSQPPATRWLAEHALGFDYDMLPADARRIVRHCI FT LDWYAVTLAACREPAVAALVDDALEEGAGGASPVIGHAAGVSQGAAALIQGTAAHWLDY FT DDVNLAITGHPTAVVYSALLPLALARGSTAREVMAAFAAGYETACRVGRWLGDVHYRHG FT YHATATAGAVAAACARLMRLSTAQTASALCLAGTQAAGLKALFGTMAKPLHAGLAARNG FT LMAARLAARGLGAGQQGLEAAQGFAAVLSPAPDWPAATATPPGGLFLGGRLFKYHASCY FT GTHAVIECGRMLRERGARVQDIARITLHAHPGSENMCNIATPRTANEARFSLRMNAAFG FT LLGLDASAIDAYTPARLADPAIAELRDRMRVEFHDDLAMIESRMLIEHHDGSAMQARHD FT AGVPAGSIDDEAACLQAKFHALAAPVIGVGAAGRLRDAILDLDAAPGLHALAVTVPATG FT GAA" FT CDS 12865..14061 FT /transl_table=11 FT /locus_tag="BPP3867" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3180" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7W408" FT /protein_id="CAE39150.1" FT /translation="MSEPRPRRILPIIVLAQFCGTSLWFTGNATSADLGMGDSVAYVAS FT AVQLGFIVGTLCSAWLRIADRYAASRLFFGSCLLGAACNYPLTMLALATLPQPDAAVLI FT LRFLVGVALAGIYPVGIRAAASWFQAGLGHALGFLTGALVLGTSFPHLMRALGARIDGS FT LVLASASAIAVLGGAAMLAWVPDGPYARRAPSSGGGTLAQAWRSLPGLRAAAIGYFGHM FT WELYAFWTFVPFYVAAHAAALGAPMAAPTVSLWAFAIIGLGALGCVDGGFVSRRLGSRP FT VALTQLSLSGLCCVLSPLCFALPTPAFLAFLLFWGIVVVGDSPQFAALVAQESPPAQVG FT SIVTLVNAIGFAITVVSIQLLDALAGALPAPYVMAVLAAGPIIGVAWAGAGGWRPAPR" FT misc_feature 12865..12957 FT /note="Signal peptide predicted for BPP3867 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.949) with cleavage site FT probability 0.933 between residues 31 and 32" FT misc_feature join(12889..12942,12985..13053,13072..13140,13168..13236, FT 13255..13323,13351..13419,13537..13605,13618..13686, FT 13723..13821,13879..13947,13966..14034) FT /note="11 probable transmembrane helices predicted for FT BPP3867 by TMHMM2.0 at aa 9-26, 41-63, 70-92, 102-124, FT 131-153, 163-185, 225-247, 252-274, 287-319, 339-361 and FT 368-390" FT CDS complement(14058..15596) FT /transl_table=11 FT /locus_tag="BPP3868" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3181" FT /db_xref="InterPro:IPR007390" FT /db_xref="UniProtKB/TrEMBL:Q7W407" FT /protein_id="CAE39151.1" FT /translation="MNAITGGGELHAVGRAQPISEGSEWTFELIQRYDEAISEIAREYR FT LDTYPNQIEVITSEQMLDAYASAGLPIGYPHWSYGKEFIRNEQYYRKGMQGLAYEIVIN FT SSPCIAYLMEENSMAMQALVIAHACYGHNSFFKGNYLFRQWTDADSILDYLVFARKYVM FT DCEDRYGIEAVEAILDSCHALAAHGVDRYKRPTPISYREEAQRQAEREEHARRQYNDLW FT RTVPRQESPAGAGERRAVFPPEPEENLLYFIEKYAPKLEPWQKELVRIVRKIAQYFYPQ FT GQTKVMNEGWATFWHYTLLNRLHQKGRVTDGFMIEVLQSHTNVVSQRGFDERGYGGVNP FT YALGFSMMQDIRRICERPDEEDRRWFPDIAGSDWLTTLDFAMRNFKDESFISQYLSPRL FT IREFRFFAIADHQANPKLEVAAIHDDEGYRQIRKLLAAQHNRDNQVPDIQVVRYFRESD FT RALVLRHQQSRGRPLAGEDADKVMKHLARLWGFRVRLEEAAPDGTVLSYRQIEP" FT CDS complement(15593..16852) FT /transl_table=11 FT /locus_tag="BPP3869" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3182" FT /db_xref="InterPro:IPR006698" FT /db_xref="UniProtKB/TrEMBL:Q7W406" FT /protein_id="CAE39152.1" FT /translation="MNSLIDRRLNGRNKSAVNRERFLRRYKDQIRKAVQDLIRERSISD FT MDQGGEINLPARDISEPSFRHGEGGDREIVHPGNREFAKGDTFDRPQGGDGGSGSQPGE FT GESVDQFTFSLSRAEFLNLFFEDLELPHLARTQLGDVKQQRWHRAGYTTTGSPSMLSVN FT RTLKASLSRRVALGVGARAALDAAEQELEAARDAGAPQAELDRLLAEVEKCAARVARVP FT FLDDLDLRYRNRVAVAVPMARAVMFCLMDVSGSMDEMKKDLAKRFFTLLYMFLSRKYEH FT VDVIFIRHTDNAEEVDEQTFFYDPKSGGTIVLSALELMHEIVQKRYSPATWNIYAAQAS FT DGDSFGADAGKSARFLAENLLPATRYFAYIEVPDSQEARKSSLWAEYEQESASHFVMRR FT ICERGEIFPVFHDLFKKETV" FT CDS complement(16865..18826) FT /transl_table=11 FT /locus_tag="BPP3870" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3183" FT /db_xref="InterPro:IPR017441" FT /db_xref="UniProtKB/TrEMBL:Q7W405" FT /protein_id="CAE39153.1" FT /translation="MNQPDLFSSTSGTVGGLAVQSILEGFKSHYARDQETELSLAKQDP FT MAYASPAERMLAAIGEPELIDTRNDPRLSRLFSNRLVRRYPAFKEFYGLEDVIDQIVAF FT FKHAAQGLEERKQILYLLGPVGGGKSSIAERLKVLMEAYPIYALKGSPVNESPLGLFHP FT DRFGDTLEQEYGIARRYLSGIMSPWAVKRLREFDGDISQFRVVRLNPSVLRQVAIAKTE FT PGDENNQDISSLVGKVDIRKLERYAQDDPDAYSYSGGLCLANQGLLEFVEMFKAPIKML FT HPLLTATQEGNFKGTEGFSAIPFNGMILAHSNESEWQTFRNNKHNEAFLDRIYIVKVPY FT CLQVSEEVCIYEKLLRHSSLAQAPCAPGTLDMMAQFSVLTRLKEPENSSIYSKLRVYDG FT ESLKDVDPKAKALQEYKDYAGTDEGMTGVSTRFAYKILSSVFNYDQTEVAANPVHLMYV FT LEQRIAREDFPEETRRRYLEFIKGYLAPRYAEFIGKEIQTAYLESYSEYGQNIFDRYVT FT FADCWIQDEEFRDPETGESFDRSALNDELEKIEKPAGIANPKDFRNEIVNFVLRARANN FT AGRNPNWTSYEKLREVIEKKMFSNTEDLLPVISFNAKASAEDRSKHQSFVDRMVDKGYT FT EKQVRLLCEWYLRVRKSS" FT misc_feature complement(18380..18454) FT /note="PS00107 Protein kinases ATP-binding region FT signature." FT misc_feature complement(18437..18460) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(19150..20310) FT /transl_table=11 FT /locus_tag="BPP3871" FT /product="riboflavin biosynthesis protein ribd [includes: FT diaminohydroxyphosphoribosylaminopyrimidine deaminase" FT /product="putative riboflavin-specific deaminase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2948" FT /db_xref="GOA:Q7W404" FT /db_xref="InterPro:IPR011549" FT /db_xref="UniProtKB/TrEMBL:Q7W404" FT /protein_id="CAE39154.1" FT /translation="MNTSTPTDDVSWMRRALALARSVMYSTAPNPRVGCVIVRDGQVLG FT EGATQPPGGPHAEVCALREAAARGASLAGATVYVTLEPCSHFGRTPPCVDALAAAAPAR FT VVVAMGDPNPRVNGQGLARLRAAGIAVTEDVCRDEALELNAGFAARMSRGLPWVWLKLA FT ASLDGRSALHNGVSQWMTGEAARADGHHWRARSGVVLTGMGTVLKDDPQLNARAVQTSH FT PPRKAVIDGRFEIPEDARLFDDGAQVLVFTARSDAAKARRMADRNVRVIELPGVRPDRV FT DLPAVMRWLASQEINEVHVEAGAGLSGALLAEDCVDELLVYLAPVLLGDAAGMVRLPLL FT EHLDGARRFEFAELAPVGTDVRLRARVASRWRALQDSVSAASRQRG" FT misc_feature complement(19252..19842) FT /note="HMMPfam hit to PF01872, RibD C-terminal domain, FT score 1.1e-55" FT misc_feature complement(19984..20295) FT /note="HMMPfam hit to PF00383, Cytidine and deoxycytidylate FT deaminase zinc-binding region, score 1.9e-38" FT misc_feature complement(20020..20145) FT /note="PS00903 Cytidine and deoxycytidylate deaminases FT zinc-binding region signature." FT CDS 20480..21043 FT /transl_table=11 FT /locus_tag="BPP3872" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2949" FT /db_xref="GOA:Q7W403" FT /db_xref="InterPro:IPR000868" FT /db_xref="UniProtKB/TrEMBL:Q7W403" FT /protein_id="CAE39155.1" FT /translation="MKQALIVIDVQESFRHRPFWDDSELPAFLAQVQALIDGCRQRDIP FT VLQVFHVNAANDPASPFAPASGHVVALRELRIAPTAVFHKTVHSSLYARDEAGHSLHDW FT LLEHGVGEIIVCGIRTEQCCETTTRHASDAGFKVRFALDATLTFAMRAASGKTYTPAEI FT RERTELVLQDRFAQVLPAAAALAA" FT misc_feature 20483..20974 FT /note="HMMPfam hit to PF00857, Isochorismatase family, FT score 2e-05" FT CDS 21056..22012 FT /transl_table=11 FT /locus_tag="BPP3873" FT /product="putative AraC-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2950" FT /db_xref="GOA:Q7W402" FT /db_xref="InterPro:IPR018060" FT /db_xref="UniProtKB/TrEMBL:Q7W402" FT /protein_id="CAE39156.1" FT /translation="MVPVYFVVPAGLVLLDLAGPAEAFRIANKLRPGSFALHYCGPEPE FT VECGLAGLHLSRLAPLPASLPAQALVVVPGVVDAAFQLDRPPLRAVVDWLARCRAQGRF FT DLMSVCSGALLAAAAGLLAHRECTSHHHCLSGLARLEPTARIHDNRIFVEDDGIWTSAG FT VTAGIDLALYLVSRACGPRVASAVARDLVVYLRRAGTDPAISPWLDGRNHMHPGVHRVQ FT DAIVHNPAAAWTPQTLAAQAHTSARHLSRLFAEHAGYTPMDYLYRVRLALARELIRETR FT LDLEHVAERAGFGSAHHMRRVWRRHESGSPGAARHPA" FT misc_feature 21059..21592 FT /note="HMMPfam hit to PF01965, ThiJ/PfpI family, score FT 0.0053" FT misc_feature 21716..21853 FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family, score 0.36" FT misc_feature 21872..22003 FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family, score 0.0023" FT CDS complement(22025..22507) FT /transl_table=11 FT /locus_tag="BPP3874" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2951" FT /db_xref="GOA:Q7W401" FT /db_xref="InterPro:IPR003796" FT /db_xref="UniProtKB/Swiss-Prot:Q7W401" FT /protein_id="CAE39157.1" FT /translation="MRCPFCGNADTQVVDSRVSEEGDTIRRRRRCLSCDKRFTTYERVE FT LAMPSVVKRDGSRTEYDAGKVRGSLSLALRKRPVSTDEVDSAVARIEETLLASGMREVP FT SEQIGELVMGELKRLDKVAYVRYASVYKSFEDIGEFVEAIREMQGPLLPGKKLRKD" FT misc_feature complement(22091..22363) FT /note="HMMPfam hit to PF03477, ATP cone domain, score FT 3.1e-24" FT CDS complement(22666..23913) FT /transl_table=11 FT /gene="glyA" FT /locus_tag="BPP3875" FT /product="serine hydroxymethyltransferase" FT /EC_number="2.1.2.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP2952" FT /db_xref="GOA:Q7W400" FT /db_xref="InterPro:IPR019798" FT /db_xref="UniProtKB/Swiss-Prot:Q7W400" FT /protein_id="CAE39158.1" FT /translation="MFNRNLTLDQVDPDVWAAIQKEDVRQEQHIELIASENYASPAVMQ FT AQGTQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRLKQIFGAEAANVQPNSGSQANQG FT VYMAVLKPGDTVLGMSLAEGGHLTHGASVNASGKLYNFVPYGLDADEVLDYAQVERLTK FT EHKPKLIVAGASAYALHIDFERMARIAHDNGALFMVDIAHYAGLVAGGAYPNPVPHADF FT VTSTTHKSLRGPRGGVIMMKAEVEKAVNSAIFPGIQGGPLMHVIAAKAVAFKEALSPEF FT QDYAQQVVKNAKVLADTLVKRGLRIVSGRTESHVMLVDLRPKGITGKEAEAVLGQAHIT FT VNKNAIPNDPEKPFVTSGIRLGTPAMTTRGFKEAEAELTANLIADVLDNPRDEANIAAV FT RARVNELTARLPVYGN" FT misc_feature complement(22765..23892) FT /note="HMMPfam hit to PF00464, Serine FT hydroxymethyltransferase, score 2e-247" FT misc_feature complement(23203..23253) FT /note="PS00096 Serine hydroxymethyltransferase FT pyridoxal-phosphate attachment site." FT CDS complement(24128..24784) FT /transl_table=11 FT /locus_tag="BPP3876" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2953" FT /db_xref="HSSP:1VI3" FT /db_xref="InterPro:IPR005247" FT /db_xref="UniProtKB/TrEMBL:Q7W3Z9" FT /protein_id="CAE39159.1" FT /translation="MNLSSLSFSDNESIPERYAFGRIDAQSHVALADNFNPQFSWDDVP FT DGTLSFALICHDPDVPSQPDDVNQEGRTVPADLPRVDFFHWVLVDLAADMREIQEGAFS FT DGITPRGKGGPLAPNNARQGVNDYTGWFAADRDMNGDYFGYDGPCPPWNDERVHHYVFT FT LYALDVPSLNLQGSFTGLDALKAMQGHVLAQASLTGTYTLNPDLAPRQIGATTSS" FT CDS complement(24820..26049) FT /transl_table=11 FT /gene="tyrS" FT /locus_tag="BPP3877" FT /product="tyrosyl-tRNA synthetase" FT /EC_number="6.1.1.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP2954" FT /db_xref="GOA:Q7W3Z8" FT /db_xref="HSSP:1H3F" FT /db_xref="InterPro:IPR002307" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3Z8" FT /protein_id="CAE39160.1" FT /translation="MSHPEAPITPEVEADLAIARRGCDELLVESEFARKLARSRATGVP FT LRIKLGLDPTAPDIHLGHTVVLNKMRQLQDLGHNVIFLIGDFTSTIGDPSGRNSTRPPL FT TREQIETNAKTYYAQASLVLDPARTEIRYNSEWCDPLGARGMIQLASRYTVARMMERED FT FTRRFKGGVPIAVHEFLYPLLQGYDSVALKADLELGGTDQKFNLLVGRELQKEYGQEQQ FT CILTMPLLVGTDGVEKMSKSKGNYIGISEAPESMFGKLMSISDMLMWRYYELLSFRSLA FT DIAALKAEIDGGRNPRDAKVALAQEIVARFHSPQAAEAALAAFEARFRDGAIPEDMPEV FT TVGGAPQGILRILREAGLVASGSEAQRNVEQGGVRVNGDRVEDKSLQLSAGTYVVQVGK FT RKFARVKLVG" FT misc_feature complement(24868..25011) FT /note="HMMPfam hit to PF01479, S4 domain, score 4e-05" FT misc_feature complement(25063..25923) FT /note="HMMPfam hit to PF00579, tRNA synthetases class I (W FT and Y), score 4e-99" FT misc_feature complement(25858..25890) FT /note="PS00178 Aminoacyl-transfer RNA synthetases class-I FT signature." FT CDS 26311..27726 FT /transl_table=11 FT /locus_tag="BPP3878" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2956" FT /db_xref="GOA:Q7W3Z7" FT /db_xref="InterPro:IPR002886" FT /db_xref="UniProtKB/TrEMBL:Q7W3Z7" FT /protein_id="CAE39161.1" FT /translation="MNRGPNSLVRSFKRKVAALFAPPVEPTSRGGALLRRTLTVSALGL FT FAGAAALGMVQQPDRSELPPLRLIDSVLPLEAGQMQVSDASNAPYISETRIRAGDTLAA FT VLQRLDIDSPRLQNFLTHDASARSIYKLYPGRSVQAATNENGDLVWLRYIHTPGNESGG FT QVVTRLLHVAPDGANGYKAEEVTQGTEQQTRVAVGTIRSSLFGATDAAGIPDSVTMQMA FT DILSSKIDFLRDLRQGDQFRVVYEVRTHEGRYAGAGRVQALEFINGDKTYNAVWFSPDG FT KSGSYYDFDGTSLRGAFLRTALKFSRISSTFGMRMHPIHKTWTGHKGVDYAAPTGTPIH FT ATADGTVEFAGWQNGYGNVVIIKHHGKYSTLYAHQSRIAAGLKKGQKIAQGELVGYVGS FT TGWATGPHLHYEFRVNNQPIDPLAVDLPVARKLEPAELRAFTQAVQPYKQQIKLLTEFQ FT QTLPEGSATVASR" FT misc_feature 27328..27582 FT /note="HMMPfam hit to PF01551, Peptidase family M23/M37, FT score 2.6e-38" FT CDS 27732..28868 FT /transl_table=11 FT /locus_tag="BPP3879" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2957" FT /db_xref="GOA:Q7W3Z6" FT /db_xref="InterPro:IPR005338" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3Z6" FT /protein_id="CAE39162.1" FT /translation="MDSTTHGPRTHVPGRLFIGLMSGTSMDGADGVLVRLDGPRPEVLA FT SASLPMPAALRDELFALNHAGANELERAALAANGLARLYARAVRQLLDQAGLQPGDVAA FT IGAHGQTVRHRPDLGYTLQLNAPALLAELAGIDVVADFRSRDVAAGGQGAPLVPPFHAA FT LFAGGQARAVLNLGGIANVTLLEPGRPPRGFDTGPANVLLDAWCQRHTGQPYDADGRFA FT AQGQVLAGLLEHLIASEPWFALAPPKSTGRDLFNLDWLLARLQAFDGPAPQPQDVQATL FT QRLTARTVANAIDASAAAPRDVLVCGGGARNPGLMRELAYCLQRPVHPTDDAGVPAQWV FT EALAFAWLAQACLDRIPAGLPTVTGARAARVLGALYPA" FT misc_feature 27774..28862 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03702, Uncharacterised protein FT family (UPF0075), score 2.3e-176" FT CDS complement(28938..29309) FT /transl_table=11 FT /locus_tag="BPP3880" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2958" FT /db_xref="GOA:Q7W3Z5" FT /db_xref="HSSP:1R94" FT /db_xref="InterPro:IPR017870" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3Z5" FT /protein_id="CAE39163.1" FT /translation="MNAVTETVDLQAPPPVPLVFTDSAAAKVKDLLAEEGNPELKLRVF FT VQGGGCSGFQYGFTFDEVVNDDDTVLDKAGVQLLVDPMSFQYLVGAEIDYKEDLEGAQF FT VIRNPNASTTCGCGSSFSV" FT misc_feature complement(28944..29261) FT /note="HMMPfam hit to PF01521, HesB-like domain, score FT 2.4e-54" FT misc_feature complement(28947..29000) FT /note="PS01152 Hypothetical hesB/yadR/yfhF family FT signature." FT CDS complement(29511..30164) FT /transl_table=11 FT /locus_tag="BPP3881" FT /product="putative integral membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2959" FT /db_xref="UniProtKB/TrEMBL:Q7W3Z4" FT /protein_id="CAE39164.1" FT /translation="MRPGRAVMPDDSASAQPRAPVARPQGRARAWLALAAGLVVGAVAG FT WRYGLAHQGPDDAVVLTRQQVAAQEAAMQQREAEARFLRAQLDTADGEIAVERAARAEL FT ETQLQSAQSEVGRVRDQLAFYEQLLPPGPAGSVDIRGVAFEREGQGLRYKVLLMRSGRG FT ETPFSGALRFQATGTLKGETVTRDLEPLTVKAEGGGATVPEAGASLLALQFDQY" FT CDS complement(30180..31244) FT /transl_table=11 FT /gene="argC" FT /locus_tag="BPP3882" FT /product="N-acetyl-gamma-glutamyl-phosphate reductase" FT /EC_number="1.2.1.38" FT /note="ortholog of Bordetella pertussis (BX470248) BP2960" FT /db_xref="GOA:Q7W3Z3" FT /db_xref="InterPro:IPR012280" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3Z3" FT /protein_id="CAE39165.1" FT /translation="MAQASNSRIKVGIVGGTGYTGVELLRLLSQHPHVALTAITSRKED FT GLPVADMYPNLRGRVKLAFSAPEKASLTDCDVVFFATPHGVAMAQAAELLAAGTRVIDL FT AADFRLQDTAVFERWYKIPHTCPDILADSVYGLVELNREAISKARVIGNPGCYPTTVLL FT GLAPLIEGGKQLVDVQTLIADCKSGVSGAGRKAEVGSLFSEASDNFKAYGVAGHRHQPE FT IVAQLEKLAGGKVGLTFVPHLVPMIRGMFSTLYARILPQARDTDFQALFEARYADEPFV FT DVMPAGSLPETRSVRASNNLRISVQRPGGGDQLVILVVQDNLVKGASGQAVQNMNLMFG FT LPESAGLDQVAILP" FT misc_feature complement(30270..30764) FT /note="HMMPfam hit to PF02774, Semialdehyde dehydrogenase, FT dimerisation domain, score 6.4e-26" FT misc_feature complement(30789..31223) FT /note="HMMPfam hit to PF01118, Semialdehyde dehydrogenase, FT NAD binding domain, score 4.5e-42" FT misc_feature complement(30903..31220) FT /note="HMMPfam hit to PF01408, Oxidoreductase family, FT NAD-binding Rossmann fold, score 0.00095" FT CDS complement(31433..31825) FT /transl_table=11 FT /gene="rpsI" FT /locus_tag="BPP3883" FT /product="30s ribosomal protein S9" FT /note="ortholog of Bordetella pertussis (BX470248) BP2961" FT /db_xref="GOA:Q7W3Z2" FT /db_xref="InterPro:IPR000754" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3Z2" FT /protein_id="CAE39166.1" FT /translation="MIGNWNYGTGRRKTSVARVFIKKGSGKIVVNGKPVDEFFARETGR FT MIVCQPLELTGHLESFDIKVNVHGGGETGQAGAVRHGITRALIDYDAALKPALSQAGFV FT TRDAREVERKKVGFRKARRRKQFSKR" FT misc_feature complement(31439..31798) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00380, Ribosomal protein S9/S16, FT score 4.1e-53" FT misc_feature complement(31565..31621) FT /note="PS00360 Ribosomal protein S9 signature." FT CDS complement(31835..32302) FT /transl_table=11 FT /gene="rplM" FT /locus_tag="BPP3884" FT /product="50s ribosomal protein L13" FT /note="ortholog of Bordetella pertussis (BX470248) BP2962" FT /db_xref="GOA:Q7W3Z1" FT /db_xref="HSSP:1J3A" FT /db_xref="InterPro:IPR005823" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3Z1" FT /protein_id="CAE39167.1" FT /translation="MSWQSKYFYLGTIMKTFVAKPHEVKRDWFVIDAKGKVLGRVASEV FT AHRLRGKHKPEFTPHVDTGDYIVIINAADIVVTGNKAQDKKYFRHTTYPGGIRETNFEK FT MQQRFPGRAIQKAVKGMLPKGPLGYAMIKKLKVYAGAEHPHTAQQPKPLEF" FT misc_feature complement(31841..32221) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00572, Ribosomal protein L13, score FT 5.2e-68" FT CDS complement(32559..33656) FT /transl_table=11 FT /locus_tag="BPP3885" FT /product="putative exported solute binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2963" FT /db_xref="GOA:Q7W3Z0" FT /db_xref="InterPro:IPR018389" FT /db_xref="UniProtKB/TrEMBL:Q7W3Z0" FT /protein_id="CAE39168.1" FT /translation="MQRRSFLKHAGLGAVAGSAAVAAPVFAQDAPTLNWRMASSFPRSL FT DTLFGTGEIFVKFVSEATGGKFNIRQFPGGEIVPALQVMDAVSNNTIECGHTVSYYYYG FT KDPAYCFDSAVPFGLNARQMNAWMFDGDGMKLTREMFKPLKIVNFPMGNTGVQMGGWYR FT KEIKSPDDLKGLKMRTAGFAGEVLSRMGVVPQQLAGGDVYPSLEKGTLDAVEFVGPYDD FT EKLGFNKVAKYYYYPGWWEGGPQVSLYLNEGAWEGLPKNYQAIVEAASRVAHVAMTSRY FT DALNPPALRKLIAGGAELRAFPRSVMDASYEAALTVYKEFSDKDPKFKAIYENYMGFRD FT SVVPWFRLAEGSYDQYLGVAMAGRK" FT misc_feature complement(32682..33548) FT /note="HMMPfam hit to PF03480, Bacterial extracellular FT solute-binding protein, family 7, score 6.6e-64" FT misc_feature complement(33576..33656) FT /note="Signal peptide predicted for BPP3885 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 27 and 28" FT CDS complement(33995..35359) FT /transl_table=11 FT /locus_tag="BPP3886" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2964" FT /db_xref="InterPro:IPR002510" FT /db_xref="UniProtKB/TrEMBL:Q7W3Y9" FT /protein_id="CAE39169.1" FT /translation="MVNSSNSLPIAANHARFSELVEQVLAYARQAGASDAAAEVSESLG FT LSVSVRKNDIETVEQTRDRSLDLTVYAGQSRGSASTSDFSEQALRETVEAAWHIARHTA FT ADPAAGLPDADLLATEFPDLGLHYPWPVTTEEAAELALRAERAAREVDARITNTDGASV FT ASYEGQFVMGNTRGFLGGYPYSRHSLSVAPIAGRGNNMQRDYWYTSDRNPNRLAAPEVV FT GRYAAERTLSRLSARRLRTGKFPVLFEAPLALGLLGAFTQAANGGALYRKATFLVDALG FT KPIFADHIDVSENPHIPGAMGSSPFDDEGVRTRARSVVSAGVLEGYFLSSYTARKLGLA FT TTGNAGGSHNLTLSSRLTRPGDDFEAMLRKLGTGLLVTELIGQGVNYVSGDYSRGAFGY FT WVENGKIQHAVQEITIAGNLVDMFRHIVAVGADAISRGTKTTGSILIEQMSVAGT" FT misc_feature complement(34379..35260) FT /note="HMMPfam hit to PF01523, Putative modulator of DNA FT gyrase, score 1.2e-52" FT CDS 35352..35969 FT /transl_table=11 FT /locus_tag="BPP3887" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2965" FT /db_xref="InterPro:IPR006839" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3Y8" FT /protein_id="CAE39170.1" FT /translation="MTIAVQFAETVIIAKSVSTQFPMSSHSQEPVGEENFDDSEYDRPS FT KSQVKREMHALLDLGKELVELSPERLRQLPLEERLYEAIREAQRTTGREGRRRQIHFVG FT KLMRSAPAEAIRAQLDTWRNGSREETAAMHRLEALRERLLKDDDALTAVLQRNPDADIQ FT HLRALIRAARKEAAANAALSQGQEPQRKQYRALFQALKNLSA" FT CDS 35983..36657 FT /transl_table=11 FT /locus_tag="BPP3888" FT /product="probable carboxylesterase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2966" FT /db_xref="GOA:Q7W3Y7" FT /db_xref="HSSP:1AUO" FT /db_xref="InterPro:IPR003140" FT /db_xref="UniProtKB/TrEMBL:Q7W3Y7" FT /protein_id="CAE39171.1" FT /translation="MTAQTDLLDCIELETAPNPTHAVIWLHGLGADGNDFVPIVPELRL FT DGLAVRFVFPNAPVQPVTINGGMAMRSWYDILVTDLVRREDAAGIRASEAAVRALIARE FT NERGIPASKIVLAGFSQGCAMTLHTGLRLDQQLAGMMGLSGYLPLLDSAAAERHPANAT FT TPIFLAHGLYDPVVAPERVDASRAHLQALGYDVRWHTYPMPHSVCLEEVADIGAFLREV FT LR" FT misc_feature 36004..36651 FT /note="HMMPfam hit to PF02230, FT Phospholipase/Carboxylesterase, score 5.7e-63" FT CDS join(36947..37339,37341..37916) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP3889" FT /product="putative exported protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP2967" FT /db_xref="PSEUDO:CAE39172.1" FT CDS 37913..38722 FT /transl_table=11 FT /locus_tag="BPP3890" FT /product="putative ABC transport proteins, ATP-binding FT component" FT /note="ortholog of Bordetella pertussis (BX470248) BP2969" FT /db_xref="GOA:Q7W3Y6" FT /db_xref="HSSP:1Q1B" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W3Y6" FT /protein_id="CAE39173.1" FT /translation="MSAVVHNLMPAPAAAKIELREVSLSYFTPEGETEALSKVSFSLAP FT GEFVSLIGQSGCGKSTLLSLIAGLIPPTSGAVLVDGTPVTRPSPRIGYMLQQDYLFEWR FT TILDNVMLGAEIQGRRDARSEARAVHLLEKCGLGAFLEHTPRQLSGGMRQRAALARTLV FT TEPDVILLDEPFSALDSQTRLAISDEVVDILRRERKTVVLVTHDIGEAIAMTDRVIVLS FT RRPGRLKSQYRINFAEPRPTPFQARSRPEFNTYFEQLWEELDVHVEG" FT misc_feature 38048..38584 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 5.2e-61" FT misc_feature 38069..38092 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 38354..38398 FT /note="PS00211 ABC transporters family signature." FT CDS 38725..39561 FT /transl_table=11 FT /locus_tag="BPP3891" FT /product="putative ABC transport proteins, inner membrane FT component" FT /note="ortholog of Bordetella pertussis (BX470248) BP2970" FT /db_xref="GOA:Q7W3Y5" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7W3Y5" FT /protein_id="CAE39174.1" FT /translation="MTAPAANTLALRPAHAPSEKYQEYLRRDRRRKHHVRLAQLMLLVL FT FLCAWEILPRMHVLNPLLTSYPSALWPTFFELWNHGNLPRHIAATVMATLVGFGLSMLI FT GVAVAAALWWSDFLYKVIDPFLVVANAMPKIAFVPIFYLWLGSDYAVYGMAVAIAVFVT FT IMVVYAGFRGVDPNKMKLAYTFGASRWQVLTKVILPGSVPTLIAAVKMNIGLALVGVIV FT GEFQSADLGLGFLIMNGSQIFKLNIVMTAITLLALISSVMYLAIYRLEAAVARRYA" FT misc_feature join(38824..38883,38995..39063,39100..39159,39169..39237, FT 39367..39435,39463..39531) FT /note="6 probable transmembrane helices predicted for FT BPP3891 by TMHMM2.0 at aa 34-53, 91-113, 126-145, 149-171, FT 215-237 and 247-269" FT misc_feature 39232..39447 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 0.031" FT CDS 39576..40268 FT /transl_table=11 FT /locus_tag="BPP3892" FT /product="putative hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2971" FT /db_xref="GOA:Q7W3Y4" FT /db_xref="InterPro:IPR000868" FT /db_xref="UniProtKB/TrEMBL:Q7W3Y4" FT /protein_id="CAE39175.1" FT /translation="MEFPQWVVDRVQARQGCLHPYDSLPGPRTAAVVIDMQRYFTLPGY FT QGECAAARAIVQPINRLCAAVRAAGGSVVWVQTASDHADSFWSHHHGVMLTPERSKRRL FT ETLKRDSEGYALHPDMDARAEDVRVTKRFYSAMAPGSSELEPLLRGRGIDTLLIAGTVT FT NVCCESTARDAMMRDFRTIMVDDALAAVTPAEHENALHGWMLFFGDVLSVDEASARLAA FT ADEARRIA" FT misc_feature 39645..40229 FT /note="HMMPfam hit to PF00857, Isochorismatase family, FT score 6.3e-29" FT CDS complement(40280..40669) FT /transl_table=11 FT /locus_tag="BPP3893" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2972" FT /db_xref="InterPro:IPR004360" FT /db_xref="UniProtKB/TrEMBL:Q7W3Y3" FT /protein_id="CAE39176.1" FT /translation="MRIRLNSIFVDDQDKALRFYTDVLGFTKKHDIPAGAARWITVVSP FT EGPDDLELVLEPNGHPAASAYQAALRQDGIPVTAFESADIHAEARRLKDRGVAFTIDPT FT PAGPATIAIFSDTCGNLIQLYQVGR" FT misc_feature complement(40286..40645) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00903, Glyoxalase/Bleomycin FT resistance protein/Dioxygenase superfamily, score 2.5e-17" FT CDS complement(40775..42163) FT /transl_table=11 FT /gene="dbpA" FT /locus_tag="BPP3894" FT /product="probable ATP-dependent RNA helicase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2973" FT /db_xref="GOA:Q7W3Y2" FT /db_xref="HSSP:1FUU" FT /db_xref="InterPro:IPR014001" FT /db_xref="UniProtKB/TrEMBL:Q7W3Y2" FT /protein_id="CAE39177.1" FT /translation="MTNTSFSSLPLLPALLDNLQGLGFEQMTPIQAQSLPLILEGRDLI FT AQAKTGSGKTAAFGLGVLQNLDVNRLAPQALVLCPTRELADQVAQELRRLARLIPNVKV FT LTLCGGAAARPQAESLARGTHLVVGTPGRIQDHLARGSLDLSTLNTLVLDEADRMVDMG FT FYDDIAAIASHCPARRQTLLFSATYPDNIRKLSARFLRNPAEIKVEAQHDASRIEQLFF FT EIDEGQRLDAVAALLAHFRPASTLAFCNTKIRSHDLVERLRAQGISAEALNGDLEQRER FT DEILIQFANQSCAVLVATDVAARGLDIQNLGAVINVDVTKDTEVHVHRIGRSGRGDQKG FT LALSLCSPEEMRWANLIEQYQGAPLKWADLGSLRPKSDRPLRAPMITLCIQGGKKDKLR FT PGDLLGALTGDGGLAFEQVGKINITEFNAYVALDRQVAKQAFARLSNSNIKGRRFRMRF FT LEEF" FT misc_feature complement(41153..41368) FT /note="HMMPfam hit to PF00271, Helicase conserved FT C-terminal domain, score 5e-25" FT misc_feature complement(41504..42115) FT /note="HMMPfam hit to PF00270, DEAD/DEAH box helicase, FT score 1.1e-77" FT misc_feature complement(41684..41710) FT /note="PS00039 DEAD-box subfamily ATP-dependent helicases FT signature." FT misc_feature complement(41999..42022) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(42068..42163) FT /note="Signal peptide predicted for BPP3894 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.637) with cleavage site FT probability 0.489 between residues 32 and 33" FT CDS complement(join(42303..43322,43322..43798)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP3895" FT /product="putative integral membrane protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP2974" FT /db_xref="PSEUDO:CAE39178.1" FT misc_feature complement(join(42311..42376,42398..42463,42494..42559, FT 42581..42646,42722..42787,42827..42892,42938..42994, FT 43175..43225,43238..43294,43331..43396,43427..43483, FT 43544..43594,43625..43690,43718..43783)) FT /note="14 probable transmembrane helices predicted for FT BPP3895 by TMHMM2.0 at aa 5-27, 36-58, 68-85, 105-124, FT 134-156, 168-187, 191-208, 268-287, 302-324, 337-359, FT 384-406, 413-435, 445-467 and 474-496" FT CDS 44095..44769 FT /transl_table=11 FT /locus_tag="BPP3896" FT /product="putative GntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2975" FT /db_xref="GOA:Q7W3Y1" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W3Y1" FT /protein_id="CAE39179.1" FT /translation="MTLGSQHSPLFALVQETLRKRILSGAYAQGERLVEGDLAEEMGVS FT RIPVREALRALAAAGLVRIEPRRGASVASLSPEHARDIVEVRATLEALNARLAAQRRNP FT QQVADMDRAIRDGAHACERGDTAALVEQNRHFHELLGGVSTNAVLQDLMRSLRDRTALL FT FARNSVTRAADILDEHAGILQAVTAGDADLASLLAARHVHNAAQWYFERPVDRKAVAAD FT TD" FT misc_feature 44134..44310 FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 3.8e-14" FT misc_feature 44188..44262 FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT CDS complement(44766..47225) FT /transl_table=11 FT /locus_tag="BPP3897" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2977" FT /db_xref="GOA:Q7W3Y0" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:Q7W3Y0" FT /protein_id="CAE39180.1" FT /translation="MLRHVLAPMFEPASLVVIADRLLPVTSVLPSALRARTTVVQAAPG FT AAPELPAACAGVAEGQRPDLALVCVAPGVLPETLRRLAALAPRAVILLPHELPDPYPRG FT TQALCRAWAAENRCELLGPRSFGAQRPHAGLNLSQHPSLARAGRVALVAQSRSIMAAVM FT DWAEDVHIGFSIAVSLGDEAVVGLSQVLDYLASDSRTDSIVLYIEDVGPAREFMSALRA FT AASVKPVIVLKAGRADANGVDAVFDAALRRAGAVRVRYFVQLFSAVKVLGYTRRPRGRR FT VALFSNGSGPPQLALDLIGPDAAVLQAKLSPATQRTLADMLEPDAATANPVITYTPLTP FT ERIQAILDCLLDDAGVDGVLVLLAPDALADMPAVARQLAQLAPRARKPVVSCFMGDAGM FT RPLRRMLDDAGTSAFRTPESAADAFGVLATHHYNQQLLLQTQPPEPPGLLPDSAGARDI FT MGQARAQGRRELDPIEARALLDAFYVPLREGPLGVRPIEAESRPMAIRVRRDPHFGPVI FT RFGAGGPDAVLSGADRGMDLPPLNGFLARQMIERSRLWRRVLAPQVTNVAAEALQHALV FT QVSEMVSELPDIESVDIDPLYAGETQLRVGGLRIVLCEREATVSPQLSGYAHMAIHPYP FT ARLVQARRFDDGTPWVIRPIRPEDGEPLQEFIRGLSERSRYMRFVSMMRELTPRMVARY FT TQVDYHRELALVAATQVPNPANRGHPREVIIGFAHYLRNPDGRGAEYALVIGDDWQRRK FT LGGQLMSALIDAAREQGLEYIDGLVLSTNRPMLTLMTRLGFTNDADPEDPTMRRVWLQL FT REPDAPA" FT misc_feature complement(44841..45071) FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family, score 1.2e-11" FT CDS 47322..48767 FT /transl_table=11 FT /gene="gltX" FT /locus_tag="BPP3898" FT /product="glutamyl-tRNA synthetase" FT /EC_number="6.1.1.17" FT /note="ortholog of Bordetella pertussis (BX470248) BP2978" FT /db_xref="GOA:Q7W3X9" FT /db_xref="InterPro:IPR020060" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3X9" FT /protein_id="CAE39181.1" FT /translation="MAQSAERPRPYAFMTANATRPVRTRFAPSPTGFLHLGGARTALFS FT WAFARHHQGVFVLRIEDTDVERSTPEAVQAILDSMDWLGMQPDEGPFYQMKRMDRYAEV FT LAGMLEAGTAYHCYCSPEEVDAMREAARAKGLKPRYDGTWRPEPGKTLPPVPADRKPVI FT RFRNPIDGATSWNDMVKGPISFDNGELDDLIIARPDGTPTYNFCVVVDDWDMGITHVLR FT GDDHVNNTPRQINILRALGATLPEYGHVPMILGPDGEKLSKRHGAVNVMEYDAQGYLPE FT AMINYLARLGWSHGDDELFTREQLVEWFDTRHLSKSASQWDPKKLNWVNAHYIKGMDDA FT ELAGRVAPRVERRGGKPQAADLPAIMGLLKDRAETLEQLAEDAMLFCGEYQPAPAELAA FT QHLTETARAALADFAARARDTEWNRAAISALIKAVLADRGLKMPQLGIPLRVAVTGRAQ FT TPAVDAVLELLGKETVLARLQAL" FT misc_feature 47382..48761 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00749, tRNA synthetases class I (E FT and Q), score 5.5e-164" FT misc_feature 47403..47438 FT /note="PS00178 Aminoacyl-transfer RNA synthetases class-I FT signature." FT CDS complement(48771..49973) FT /transl_table=11 FT /locus_tag="BPP3899" FT /product="putative membrane transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2979" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7W3X8" FT /protein_id="CAE39182.1" FT /translation="MSLSSESRAILLLALAAFASSTAFRICDPMLPQLAADFATTTGQA FT AYAVTAFAIAYGVLQMFFGPLGDRYGKYRVVCIATFACALGSAAAVLAGSLDALVAARA FT LSGAAGAGVVPLSMAWIGDNVPYERRQATLARFLTGTILGMAAGQLVGGLFADTVGWRW FT AFAVLVAIYLVVGTLLYRELRRQAASGQTGAAGAARIGFVAQARLVLGTPWARVVLATV FT FFEGLLVFGTLAFAPSYLHARFGISLTAAGALVASYALGGLLYTLVAGHVLRRLGERGL FT ALAGGLVLSAAFLCYWLGPQWLWSLPAGVLAGFGYYLLHATLQTNATQMVPAARGTAVA FT WFASCLFMGQAAGVALAGLVVDAAGAAMLFGMTALLLPLLGCGFAWALRRHAAAQTAQA FT A" FT misc_feature complement(join(48810..48875,48891..48956,49017..49067, FT 49080..49130,49170..49235,49266..49331,49434..49490, FT 49506..49571,49611..49676,49689..49754,49776..49841, FT 49902..49952)) FT /note="12 probable transmembrane helices predicted for FT BPP3899 by TMHMM2.0 at aa 7-24, 44-66, 73-95, 99-121, FT 134-156, 161-180, 214-236, 246-268, 281-298, 302-319, FT 339-361 and 366-388" FT misc_feature complement(49869..49973) FT /note="Signal peptide predicted for BPP3899 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.751 between residues 35 and 36" FT CDS complement(50042..50551) FT /transl_table=11 FT /locus_tag="BPP3900" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2980" FT /db_xref="UniProtKB/TrEMBL:Q7W3X7" FT /protein_id="CAE39183.1" FT /translation="MSRVSISLVGALGVALMLGGCAARKESAATAPRATPEAPEAVACT FT PAQAGDPMVGTWYSVSRQRSFAGDFQTLTVLSADGTMRYETQLKVGRKTRPALRETGCW FT HVADGIYTMRTTQSNGEPVDASDPIYQNRYRVEKVDSGKLTLRELKRNGQAVTARRMQP FT GYRLPY" FT misc_feature complement(50468..50551) FT /note="Signal peptide predicted for BPP3900 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.895 between residues 28 and 29" FT misc_feature complement(50489..50521) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(50806..51258) FT /transl_table=11 FT /locus_tag="BPP3901" FT /product="putative AsnC-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2981" FT /db_xref="GOA:Q7W3X6" FT /db_xref="InterPro:IPR019888" FT /db_xref="UniProtKB/TrEMBL:Q7W3X6" FT /protein_id="CAE39184.1" FT /translation="MDKTDIGILKALQEDGRASAQQLSETVGLSAAPVWRRVKALEANK FT VITGYSAQVDRSKVGLQGCMFAQISLERHSAGTVETFERSVRDAPEILECYAVTGDSDF FT LLKILVESPEAYDRFLHRFLFNLPGIRQTRTIVVLRELKHEVRLPL" FT misc_feature complement(50875..51186) FT /note="HMMPfam hit to PF01037, AsnC family, score 1.1e-37" FT CDS 51387..54884 FT /transl_table=11 FT /locus_tag="BPP3902" FT /product="putative pyruvate ferredoxin/flavodoxin FT oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2982" FT /db_xref="GOA:Q7W3X5" FT /db_xref="UniProtKB/TrEMBL:Q7W3X5" FT /protein_id="CAE39185.1" FT /translation="MDGPPAVDPHIDLDYQLGDNLTRTSGRVFLTGTQALVRMMLTQRR FT LDRDRGLNTAGFVSGYRGSPLGGVDMAMWKAGQALADNQVSFLPGINEDMAATAVMGTQ FT QAGVRADRKVDGVFAMWYGKGPGVDRAGDALHHGNAAGASRHGGVLVVVGDDHTAVSSS FT IPHASEASLIGWHMPIVHPASIDEYETFALWGWALSRYSGAWVAFKAVSETVECGQSFV FT LEPPAAYEMPDDPELPAEQLEYTARDFLSPAVELRMHRRLRAVRAFARRHSLDRLVCAA FT PRATLGIVTVGKAHLDTMEALHRLGLDTVGAQAPVRIYKPGLTWPLDGPRLIEFAQGLR FT HILVIEEKGAVVESQIKDLLFNRPSVAGKTGLDGAELIPAAGQLRPSLLAAPLAAWLRR FT AGHMPGGAAPAAFACPAPLSNDADGMRRRPYFCSGCPHSTSTKVPEGSQALAGVGCHYM FT AAWMDRDTGGLTQMGGEGADWIGLSPYIEMPHVFQNMGEGTYYHSGYLAIRQAVAARAN FT ITYKILFNDAVAMTGGQPVDGPISVPQICQQLRGENVARIVVTTDEPEKYRGVALGPGI FT DVHHRRDLDAVQRELRATPGVTVLIHDQTCAAEKRRRRKKNQFPDPPRRLLINSAVCEG FT CGDCGVQSNCLSVVPLETPYGRKRAIDQSSCNKDYSCVEGFCPSFVSVMGGKPRKSAAP FT AADHERLRARIARLPEPRPAPLEAPYRLLVAGMGGTGVITIGAIVSMAAHLQGLSAAVL FT DLTGLAQKGGTVVSHIRLAPSGTANGPVRLDWQQADAAILCDPVAAVAPDSLGALRRDH FT TRTTVNTYVAPVSDFTRNPDAPLRADALLAKIRHAAGEHVAALDAHAAAQALFGDSILS FT NMFMLGHAWQRGDVPLALAALARAIELNGVAVAANRAAFDAGRLAAHEPQSMAQALRPA FT AQVVQLHIPESFERAVERRVADLTAYQSAAYAQAYRDLVEQVAARERELAPAARAPRLA FT MAVARSLFKLMAYKDEYEVARLYTDDAFRAQLDSQFEGDYSLRLHLAPPLLARKDPRTG FT APRKITLGPRTLTLMKALARLKELRGTWFDPFGHTAERRMERALVAEYRATVIQLLAGL FT SVDRLAQAATIAALAETVRGYGHVKQASVRKYRDELERQLQRYQEPTGSPDVSLRQTA" FT CDS 55190..58117 FT /transl_table=11 FT /gene="nrdA" FT /locus_tag="BPP3903" FT /product="ribonucleoside-diphosphate reductase alpha chain" FT /EC_number="1.17.4.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP2983" FT /db_xref="GOA:Q7W3X4" FT /db_xref="InterPro:IPR013509" FT /db_xref="UniProtKB/TrEMBL:Q7W3X4" FT /protein_id="CAE39186.1" FT /translation="MQTTIASVTRPTAVPPAQSETSTDPNSGQWASYNIIRRNGSVVGF FT EPSKIAIAMTKAFLAVNGGQGAASARVRELVEQLTAQAVSALVRNRPAGGTFHIEDVQD FT QVELALMRSGEHDVARAYVLYRERRAQERAAAAEVLEKSSPAAAQEPTLSVVDNGVRRP FT LDLAALRATIEAAGEGLTQYTDTEAILKETVKNLYDGVPVDEVFKSAILAARALVEKDP FT AYSQVTARLLLHTIRKEVLGEEVSQADMATRYAEYFPAFIQRGIEGGLLDAKLAEYDLE FT RVAKALDGRRDLQFGYLGLQTLYDRYFLHVRGTRIELPQVFFMRVAMGLALREADREAR FT AIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAKYA FT GGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWH FT LDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSDCPDLHDKYG FT KAFEQAYAGYEAKVASGELKLFKKMPAVSLWRKMLSMLFETGHPWITFKDPCNIRSPQQ FT HVGVVHSSNLCTEITLNTNATEIAVCNLGSVNLVAHMKPSANGGYELDHDKLKRTIGVA FT MRMLDNVIDINYYAVDKARNSNERHRPVGMGIMGFQDCLHVMRVPYASQDAIDFADRSM FT EAVCYHAYWASSELAQERGRYQSYEGSLWSRGILPQDTLAMLREERGGNVDVDDSSSLD FT WDTLRSRIKEHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVND FT YLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRKLYATAFEVEPSWLVECASRR FT QKWIDQAQSLNIYMSGASGKKLDDTYKLAWQRGLKTTYYLRTLGATSAEKSTGRGGELN FT AVSAGDHGAGSAVSAAPVLPEPEIVGAVCTMRPGDPGFEECEACQ" FT misc_feature 55286..55588 FT /note="HMMPfam hit to PF03477, ATP cone domain, score FT 9.1e-17" FT misc_feature 56066..56293 FT /note="HMMPfam hit to PF00317, Ribonucleotide reductase, FT all-alpha domain, score 5.6e-28" FT misc_feature 56297..57934 FT /note="HMMPfam hit to PF02867, Ribonucleotide reductase, FT barrel domain, score 3.4e-177" FT misc_feature 57449..57517 FT /note="PS00089 Ribonucleotide reductase large subunit FT signature." FT CDS 58139..59335 FT /transl_table=11 FT /gene="nrdB" FT /locus_tag="BPP3904" FT /product="ribonucleoside-diphosphate reductase beta chain" FT /EC_number="1.17.4.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP2984" FT /db_xref="GOA:Q7W3X3" FT /db_xref="InterPro:IPR012348" FT /db_xref="UniProtKB/TrEMBL:Q7W3X3" FT /protein_id="CAE39187.1" FT /translation="MLNWEEENIATKPATSPAPAGGREAAPAVRAATGVFGDAALPTPT FT APQHAASLGASDATAGRVKVADKRIINGETDVNQLVPFKYKWAWEKYLATCANHWMPQE FT INMSRDIALWKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFL FT LRQAFEEAIHTHAYQYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFHT FT GTPEADQKLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHC FT NFGIDLINTIKLENPHLWTPEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKS FT YLRFIANRRCQQIGIEPLFPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE" FT misc_feature 58340..59248 FT /note="HMMPfam hit to PF00268, Ribonucleotide reductase, FT small chain, score 2.7e-44" FT misc_feature 58841..58909 FT /note="1 probable transmembrane helix predicted for BPP3904 FT by TMHMM2.0 at aa 235-257" FT CDS 59647..60240 FT /transl_table=11 FT /gene="bph1" FT /locus_tag="BPP3905" FT /product="histone protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2985" FT /db_xref="UniProtKB/TrEMBL:Q7W3X2" FT /protein_id="CAE39188.1" FT /translation="MTMATAKKAAKKAVKKPAAKKAAAKKATPAKKAAVKKVAVKKVAA FT KKPAVKKVAAKKPAAKKVAKKAVAKKPAAKKVAKKAVAKKAVAKKAVAKKAVAKKAVAK FT KAVAKKAVAKKAVAKKAVAKKAPAKKAAAKKAPAKKAAAARKPAAKKPAAKKPAAKKAA FT PKKPATPPSTAAAPGAKTALNPAASWPFPTGGRP" FT CDS 60379..60954 FT /transl_table=11 FT /locus_tag="BPP3906" FT /product="putative integral membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2986" FT /db_xref="GOA:Q7W3X1" FT /db_xref="InterPro:IPR003425" FT /db_xref="UniProtKB/TrEMBL:Q7W3X1" FT /protein_id="CAE39189.1" FT /translation="MATALMLGDIIRFLLEITFTLFGAALILRAWIHAVRLHPFNPLAR FT AIYQGTNWLVLPLRRVIPATGSIDWTSLIAAWVAALIYLILVWLSAVGALPPASALPSA FT MGSALLMVLKWTLNLMVWMTLIQAVLSWVNPLSPLMPLLQTLTAPLLDPIRRILPRTAI FT DFSPLVLLIGAQILLMMVARLAYGIFGV" FT misc_feature 60388..60645 FT /note="HMMPfam hit to PF02325, YGGT family, score 0.045" FT misc_feature join(60415..60483,60595..60663,60700..60768,60880..60948) FT /note="4 probable transmembrane helices predicted for FT BPP3906 by TMHMM2.0 at aa 13-35, 73-95, 108-130 and FT 168-190" FT misc_feature 60694..60930 FT /note="HMMPfam hit to PF02325, YGGT family, score 1e-05" FT CDS complement(60962..62425) FT /transl_table=11 FT /gene="dltA" FT /locus_tag="BPP3907" FT /product="putative D-alanine-D-alanyl carrier protein FT ligase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2987" FT /db_xref="GOA:Q7W3X0" FT /db_xref="HSSP:1AMU" FT /db_xref="InterPro:IPR010071" FT /db_xref="UniProtKB/TrEMBL:Q7W3X0" FT /protein_id="CAE39190.1" FT /translation="MRGMYFDLRSFEFVSDARGGQADAVVGSDRVLTWQALREEACQWA FT ARARAHGIGPDVPVVIHGHKEAAFFVAMAGALLAGAPFVPVDTIYPPERVRRIVEIVRA FT AAVYDTQADVFRPGAAEPAALAERGLAYVMFTSGSTGDPKGVQIGRESVALLGDWLRDG FT LALGEAPVFMNQAPFSFDLSMYEVFGTLAAGGTCVLNAREQIAAPQQWLARLAGSGVTV FT WVSTPSFAHQQLANRDFSPQQLRALRTFLFCGEPLPVALARKLRQRFPEAAILNTYGPT FT EATVATTALVVDDAVLAEHDPLPVGYAKPASLLYVADDEICIVGDHVMRGYLNRPDLNQ FT AKLFVHHDGRRGFRTGDLGRMREDGLLFCRGRMDDQIKLNGYRIELAEIDAALHALPGV FT AGGACAVLRRPDGTAVRVIGFVAQRTVEQASFQLPAALQQWKAQLTGRLPSYMVPSELV FT ACPDLPVSNNHKIDRKKLLEIYAAIPAAA" FT misc_feature complement(61214..62329) FT /note="HMMPfam hit to PF00501, AMP-binding enzyme, score FT 3.9e-108" FT misc_feature complement(61274..61300) FT /note="PS00697 ATP-dependent DNA ligase AMP-binding site." FT misc_feature complement(61994..62029) FT /note="PS00455 Putative AMP-binding domain signature." FT CDS complement(62436..63563) FT /transl_table=11 FT /gene="dltB" FT /locus_tag="BPP3908" FT /product="putative protein involved in the transfer of FT D-alanine into teichoic acids" FT /note="ortholog of Bordetella pertussis (BX470248) BP2988" FT /db_xref="InterPro:IPR004299" FT /db_xref="UniProtKB/TrEMBL:Q7W3W9" FT /protein_id="CAE39191.1" FT /translation="MELFGSFAFFGGALFGGLGLLLYRALGLPWRLGYRHLIGALCLAV FT WLAVFWTRPYQPLGLLAVASAALWAMRRGYLPTWAAVLLTMAPLLLLKCGITTMTGMLG FT LSFATFRAVDVLLFAPRNERISPLDYCIYLFFPLTLLAGPMYRWRNFQADLKRGYEGVT FT LETWLAGLELLIFGVIQKFGVAEAIWRYGLNTLDAHDYSLTGVALNASLYSFYLFFDFA FT GYSSMAIGVGMLFGFTLPVNFRNPLASANPQDFWRRWHISLSEWLRDVVFMPIYKALSK FT TAFFGRHRLAAQNIGILATLLAMGVWNGLALHYVVSGLMFGAYSVGHNLLVQHARTRPA FT LQAFLARRPVQWAGRALTLILAALALYVFSGRSPI" FT misc_feature complement(join(62451..62507,62568..62633,62853..62918, FT 63009..63074,63120..63170,63288..63338,63399..63464, FT 63486..63551)) FT /note="8 probable transmembrane helices predicted for FT BPP3908 by TMHMM2.0 at aa 4-26, 33-55, 75-92, 131-148, FT 163-185, 215-237, 310-332 and 352-371" FT CDS complement(63571..63696) FT /transl_table=11 FT /locus_tag="BPP3909" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2989" FT /note="No significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7W3W8" FT /protein_id="CAE39192.1" FT /translation="MKRFFWHLCLYLGLILVFVLQAQPTTGSGGPIKVEFQYQQF" FT misc_feature complement(63631..63681) FT /note="1 probable transmembrane helix predicted for BPP3909 FT by TMHMM2.0 at aa 5-22" FT misc_feature complement(63631..63696) FT /note="Signal peptide predicted for BPP3909 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.986 between residues 22 and 23" FT CDS complement(63693..64820) FT /transl_table=11 FT /gene="dltD" FT /locus_tag="BPP3910" FT /product="putative protein involved in the transfer of FT D-alanine into teichoic acids" FT /note="ortholog of Bordetella pertussis (BX470248) BP2990" FT /db_xref="UniProtKB/TrEMBL:Q7W3W7" FT /protein_id="CAE39193.1" FT /translation="MASAVALSLGLYWGADGALSALVHPHSSVASVRDNYLPNLGPDWG FT TQNVNLNRLGNALADGTLVVLGSSELSSHDLRFVPYRFFPQELKVPTLAYGHAMFQSYG FT IVSVLEAVADSLTPNTRLVIMVSPAWFASGGQLPRSAFAEHVTGPVWDRLWDKPATREQ FT MQDWIADNANWGLLWLIANGQVAELKDKIALWWNSRGERAPDRPRSPLAVPAHKYVSWP FT AAARLDAGRWHDLLGQARGIEAELGGHNPYDVRDDYYRQYLAPLNSPARNEFPEMPPMT FT RPELGDLARVMALLQQRKVRAYFVIQPFNPKLILDVERFDPVADAIKGMCARYGMGCLD FT MYSVPFQPGMVRDDMHLAELGWAIADQGIAEFFSR" FT CDS complement(64846..65085) FT /transl_table=11 FT /locus_tag="BPP3911" FT /product="acyl carrier protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2991" FT /db_xref="GOA:Q7W3W6" FT /db_xref="InterPro:IPR006163" FT /db_xref="UniProtKB/TrEMBL:Q7W3W6" FT /protein_id="CAE39194.1" FT /translation="MHTEQELHTRIADIVESIILKKVTPDTALISSGLVDSLAAVDITL FT AVESEYGCSIPAPEIAEHLQSVRTLAGYVAANSQ" FT CDS complement(65408..65911) FT /transl_table=11 FT /gene="pcp" FT /locus_tag="BPP3912" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2992" FT /db_xref="GOA:Q7W3W5" FT /db_xref="InterPro:IPR008816" FT /db_xref="UniProtKB/TrEMBL:Q7W3W5" FT /protein_id="CAE39195.1" FT /translation="MNYMHSPSVVAGRARRLLAVAAVAGSVAVLAGCANPSASSGVYTY FT GQAQREQIVRTGTVTGVRPITIQNDKSSGVGMVAGGALGGVAGNAVGGGTGRTIATVGG FT VILGALAGNAIENRAGKSSGYEITVRLDNGETRVVAQEADVPISVGQRVQVISGAGPTR FT VTPY" FT misc_feature complement(65792..65911) FT /note="Signal peptide predicted for BPP3912 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.986) with cleavage site FT probability 0.567 between residues 40 and 41" FT misc_feature complement(65813..65845) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(66085..67026) FT /transl_table=11 FT /locus_tag="BPP3913" FT /product="putative carbohydrate kinase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2993" FT /db_xref="GOA:Q7W3W4" FT /db_xref="InterPro:IPR011611" FT /db_xref="UniProtKB/TrEMBL:Q7W3W4" FT /protein_id="CAE39196.1" FT /translation="MTAPVLVCGSMAFDTIAVFEGRFKEHILAERIQSLSVSFLVPAMR FT KEYGGCAGNIAYNLKLLGGQPVPVATVGEDAGEYLARLSGLGIDVSRIQVVPGTFTAQC FT FITTDLEDNQIAAFHPGAMEFSSGNDLSDAQAAWAIIAPDSKAGMFAHAERLHARGIPF FT IFDLGQAMPLFDGADLERMLKLAQALTVNDYEAGVVEQRTGRSLAEIASGLRAAVVTRG FT AHGATVMAGGQTIEVAPVQAQAVVDPTGCGDAHRAGLLYGLTSGWGWADSCRLGNLMGA FT IKIASRGPQNHAPSRSEIDALMRANYGIGLPD" FT misc_feature complement(66139..67023) FT /note="HMMPfam hit to PF00294, pfkB family carbohydrate FT kinase, score 1e-36" FT misc_feature complement(66808..66882) FT /note="PS00583 pfkB family of carbohydrate kinases FT signature 1." FT CDS complement(67038..68147) FT /transl_table=11 FT /locus_tag="BPP3914" FT /product="possible membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2994" FT /db_xref="InterPro:IPR011723" FT /db_xref="UniProtKB/TrEMBL:Q7W3W3" FT /protein_id="CAE39197.1" FT /translation="MALTTRCPQCGAAFRVVADQLRVRNGLVRCGECATVFDGRACLVP FT APDAGAPRAAAPPVPSAPPSDPPFDPPYAHRAASEPAAPATQAPPAVLRGRADMQRGDA FT PPVDEDEPDAMADGAPEDEADWDAAPRPESAEAGWRPILPRDPAHDDREPAFRIGRTAT FT ACAAADAEDAVQVPGEVRTRYSNAVDSGRTPPEFLDDDRIQARQLVRRLWAYACVLGVL FT ALAAQLVYVYRGAIAGAAPALRPVLEQACVPLQCSVGHARRIERISITSSSLRPAAGAA FT QGDDARTRLTLNVVLRNRYDRPQEWPALVLDLTDISDTVVARKIILPQDYLPSQAGPAF FT AAGSEINLAIPVEVAGLQVNGYQLDKFFP" FT misc_feature complement(67446..67511) FT /note="1 probable transmembrane helix predicted for BPP3914 FT by TMHMM2.0 at aa 212-234" FT CDS complement(68173..69096) FT /transl_table=11 FT /gene="prmA" FT /locus_tag="BPP3915" FT /product="ribosomal protein L11 methyltransferase" FT /EC_number="2.1.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP2995" FT /db_xref="GOA:Q7W3W2" FT /db_xref="InterPro:IPR004498" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3W2" FT /protein_id="CAE39198.1" FT /translation="MRELVLNCREAQADALSDALLEAGVLSVSVEDADLGTEAERPLFG FT EPGTEPQVQAWERNCVVALLPGGADPAQILEQAIAAAGLDPALAHGWSLREVPDADWVR FT LTQSQFGPIPISERLWIVPSWHRDDPAVPGLAPDAARDAIHIELDPGLAFGTGSHPTTH FT LCLAWLEAELPAGARLLDYGCGSGILAIAARKLGAGETVAVDIDPQAVQSTVDNAEVNQ FT VRLQAMLPDALPAGEFQVVVANILSNPLKVLAPMLAGRVAPGGHLVLSGVLERQADEVA FT AAYAPWLTMSVWRERDGWVCLHGVKA" FT CDS complement(69115..70461) FT /transl_table=11 FT /gene="fabG" FT /locus_tag="BPP3916" FT /product="biotin carboxylase" FT /EC_number="6.3.4.14" FT /note="ortholog of Bordetella pertussis (BX470248) BP2996" FT /db_xref="GOA:Q7W3W1" FT /db_xref="HSSP:1BNC" FT /db_xref="InterPro:IPR013817" FT /db_xref="UniProtKB/TrEMBL:Q7W3W1" FT /protein_id="CAE39199.1" FT /translation="MFEKILIANRGEIALRIQRACRELGIKTVVVHSEADRTAKYVRLA FT DESVCIGPAPSRESYLNMPALISAAEVTDAEAIHPGYGFLAENADFAERVEKSGFVFIG FT PRPETIRQMGDKVSAKRAMIEAGVPVVPGSEGALPDDPQEILRIAREVGYPVIIKASGG FT GGGRGMRVVYTEAALLNAVNMTRSEAGAAFNNPEVYLEKFLENPRHVEIQVLADGGRNA FT VWLGERDCSMQRRHQKVIEEAPAPGIPRRLIERIGDRCADACRKMGYRGAGTFEFLYEN FT GEFYFIEMNTRIQVEHPVTELITGVDVVQQQILIAAGEKFTLRQRDIQFKGHALECRIN FT AEDPFRFVPSPGRITNWHVPGGPGVRIDSHAFNGYFVPPNYDSMIAKVITYGDTREQAL FT ARMRIALSEMVVEGISTNIPLHRELLQDARFIEGGTSIHYLEHKLAQRP" FT misc_feature complement(69139..69456) FT /note="HMMPfam hit to PF02785, Biotin carboxylase FT C-terminal domain, score 1.1e-61" FT misc_feature complement(69475..70119) FT /note="HMMPfam hit to PF02786, Carbamoyl-phosphate synthase FT L chain, ATP binding domain, score 1.7e-107" FT misc_feature complement(69583..69606) FT /note="PS00867 Carbamoyl-phosphate synthase subdomain FT signature 2." FT misc_feature complement(69958..70002) FT /note="PS00866 Carbamoyl-phosphate synthase subdomain FT signature 1." FT misc_feature complement(70123..70461) FT /note="HMMPfam hit to PF00289, Carbamoyl-phosphate synthase FT L chain, N-terminal domain, score 4.2e-53" FT CDS complement(70471..70920) FT /transl_table=11 FT /gene="fabE" FT /locus_tag="BPP3917" FT /product="biotin carboxyl carrier protein of acetyl-CoA FT carboxylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2997" FT /db_xref="GOA:Q7W3W0" FT /db_xref="HSSP:1BDO" FT /db_xref="InterPro:IPR000089" FT /db_xref="UniProtKB/TrEMBL:Q7W3W0" FT /protein_id="CAE39200.1" FT /translation="MDLRKLKTLIDLVAESGIAELEITEGEGKVRIVKFSQALRPVAYH FT MPEAVAPAAAPAAAAAPAAEAAPAAPQGHVVKAPMVGTFYRAPNPGAAPFVDVGQSVKE FT GDPLCIIEAMKLLNEIEADKAGVIKEILVENGEPVEYGQPLFIIG" FT misc_feature complement(70477..70701) FT /note="HMMPfam hit to PF00364, Biotin-requiring enzyme, FT score 8.3e-36" FT misc_feature complement(70555..70608) FT /note="PS00188 Biotin-requiring enzymes attachment site." FT CDS complement(71010..71444) FT /transl_table=11 FT /gene="aroQ" FT /gene_synonym="aroD" FT /locus_tag="BPP3918" FT /product="3-dehydroquinate dehydratase" FT /EC_number="4.2.1.10" FT /note="ortholog of Bordetella pertussis (BX470248) BP2998" FT /db_xref="GOA:Q7W3V9" FT /db_xref="InterPro:IPR018509" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3V9" FT /protein_id="CAE39201.1" FT /translation="MAQRILVLHGPNLNLLGTREPHIYGSLTLAQIDQGLAALAGQLGV FT ALTSWQSNHEGALVERIQAAAADGTDFIIINAAAYTHTSVAIRDALAAVAIPFIEVHLS FT NLYKRDSFRQHSYLSDLAIGLITGLGADGYEAALRYAARH" FT misc_feature complement(71016..71438) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01220, Dehydroquinase class II, FT score 7.3e-78" FT CDS complement(71523..72071) FT /transl_table=11 FT /locus_tag="BPP3919" FT /product="thioredoxin" FT /note="ortholog of Bordetella pertussis (BX470248) BP2999" FT /db_xref="GOA:Q7W3V8" FT /db_xref="HSSP:1FB6" FT /db_xref="InterPro:IPR017937" FT /db_xref="UniProtKB/TrEMBL:Q7W3V8" FT /protein_id="CAE39202.1" FT /translation="MNRRLFLYAGVAAAAAASGGYFLAERRNARPAPSAAAPAEGAGDP FT LAQLRQLALPDLQGTPRKLADWGGQPLVVNFWATWCAPCVKEMPELDALQKKYPQVRFV FT GIGVDTADNMRKFVEKIPVSYPLLVMGAGAIDTLRSLGNPSGGLPFTLLLSADGSMKRK FT ILGQIVYDDLDRSVAGLSA" FT misc_feature complement(71799..71855) FT /note="PS00194 Thioredoxin family active site." FT misc_feature complement(72000..72056) FT /note="1 probable transmembrane helix predicted for BPP3919 FT by TMHMM2.0 at aa 5-24" FT misc_feature complement(72024..72071) FT /note="Signal peptide predicted for BPP3919 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.268 between residues 16 and 17" FT CDS 72154..73524 FT /transl_table=11 FT /gene="mpl" FT /locus_tag="BPP3920" FT /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate FT ligase" FT /EC_number="6.3.2.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3000" FT /db_xref="GOA:Q7W3V7" FT /db_xref="HSSP:1GQY" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7W3V7" FT /protein_id="CAE39203.1" FT /translation="MHLHILGICGTFMGGLALIARSAGHKVTGCDAGVYPPMSTQLAEQ FT GIELIEGFGADQLALAPDLFVIGNVVSRGNPLMEAILDSGARYISGPQWLGEHILPGAH FT VLAVAGTHGKTTTSSMLAWILQCAQRQPNFLIGGVAPDLQVSARYAPGARPFVIEADEY FT DTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAIETQFHHLVRTVPSNGQLVLPT FT DAPALERVLERGCWTPVARFGPGGQWQAGPADEQGAFEVSVDGRDAGTVRWTLGGEHNR FT RNALAALAAARHAGVAPAEGIEALSRFGGVKRRMELRGTVNGIRVYDDFAHHPTAIATT FT IEGLRRQVGAARILAVLEPRSNTMKLGTMAARLPEALAGADLVFCFGDHAGKHALGWDP FT ARVLAPLGERAAGYDDLPALVRAVAAAARPGDHVLVMSNGGFGGVHGKLLDALAQPR" FT misc_feature 72265..73062 FT /note="HMMPfam hit to PF01225, Mur ligase family, catalytic FT domain, score 2.8e-44" FT misc_feature 73084..73341 FT /note="HMMPfam hit to PF02875, Mur ligase family, glutamate FT ligase domain, score 1.1e-12" FT CDS 73535..74128 FT /transl_table=11 FT /locus_tag="BPP3921" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3001" FT /db_xref="InterPro:IPR008886" FT /db_xref="UniProtKB/TrEMBL:Q7W3V6" FT /protein_id="CAE39204.1" FT /translation="MPILYLHGFRSSPDSFKARLLAQAMHQRGLAGQWQCPQLPASPRQ FT AAELALALAREQLAGQQDPRRLTVIGSSLGGYYATWLAERLGCQAVLLNPAVQAARDLA FT TQVGEHRMYHSDAPFHFLPEYVEELRALYADPLTHPERYFLVAATGDEVLDWREMRDRY FT PGCRQRIVQGGDHGLSDFPRWMPEVLEFALGSPH" FT CDS 74200..76083 FT /transl_table=11 FT /locus_tag="BPP3922" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3002" FT /db_xref="GOA:Q7W3V5" FT /db_xref="InterPro:IPR001900" FT /db_xref="UniProtKB/TrEMBL:Q7W3V5" FT /protein_id="CAE39205.1" FT /translation="MYVFYDDDGGFKAGNILSETDASLQVESETGKRSKIKRASTLFTF FT AAPEPAALMAQAATLAEDIDLQFLWECAPQEEFDAPALAAEYFGHAPGPVEQAALLMRL FT HGAPAYFHRRGKGRYRPAPPDILAAALAALEKKRLQAEQQQQWIDEMAQGRLPEAIALA FT AESLLVRPDKNSMQWKAFDAACTQLQKTPERLLLDLGAWPHPLALHKRRFLAVNFPRGV FT GFPAMDVPSIERELPLAEGEIYSVDDITTTEIDDALSVSALPDGKIRVGIHVAAPGLAI FT TRGSEHDKLARTRLSTVYMPGEKIPMQPDNVIQAFSLDAGRPVPAVSLYVTADPRTGAI FT EASETRLERIVVRENLRHNDLDAQISEAALADPDAPLAYGHWLRPLWQLAQALGAQREA FT VRGKPENNTRVEYSFYLDGSPDDPDTPVRLVPRQRNAPLDRMVAEYMILANNIWGGLLN FT QHGVPGIYRSQQAGRVRMSTQALPHEAIGVPQYAWSTSPLRRYVDLVNQWQLIAAVEHG FT VSARLVAPFKPRDADLYAIIGAFDAQYAAWADFQNAMERYWCMRWLKQQGISRTTAHVL FT REDLVRLANAPLVTRVGGLPEPERGAAVQIDIMNMDELALELDCRYLGPAD" FT misc_feature 74584..75747 FT /note="HMMPfam hit to PF00773, RNB-like protein, score FT 3.3e-09" FT CDS 76121..77020 FT /transl_table=11 FT /locus_tag="BPP3923" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3003" FT /db_xref="GOA:Q7W3V4" FT /db_xref="InterPro:IPR006260" FT /db_xref="UniProtKB/TrEMBL:Q7W3V4" FT /protein_id="CAE39206.1" FT /translation="MRRSASSSSILTRFWRWLGAPAQHYLLVGTAISLLVHAGALAWRF FT AGPAPARPQASTLEIVLVNARTDSAPVTAQVLAQSQVDGGGNAARGLAATPLPQTGRNA FT ETIVLEAMRKRQAQLEAEQDRLLTQLQSQARTGQERQPVHPWPDASEPGLDPREQPGVI FT QNAQIATLASRVQAYNAQPRKEFVAPAAQASRHAAYLDAWRTRIETIGTRHYPEDARGR FT IYGSLRITVTVRADGSLADFEIDQPSPHAVLNQAARRIVQMAAPFPPFPPEMARDTDVL FT VITRTWHFVNDSLETTAP" FT misc_feature 76121..76234 FT /note="Signal peptide predicted for BPP3923 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.851) with cleavage site FT probability 0.609 between residues 38 and 39" FT misc_feature 76181..76249 FT /note="1 probable transmembrane helix predicted for BPP3923 FT by TMHMM2.0 at aa 21-43" FT CDS 77017..77880 FT /transl_table=11 FT /gene="aroE" FT /locus_tag="BPP3924" FT /product="shikimate 5-dehydrogenase" FT /EC_number="1.1.1.25" FT /note="ortholog of Bordetella pertussis (BX470248) BP3004" FT /db_xref="GOA:Q7W3V3" FT /db_xref="HSSP:1NYT" FT /db_xref="InterPro:IPR006151" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3V3" FT /protein_id="CAE39207.1" FT /translation="MTLPASPPRYAVIGNPIAHSRSPQIHAMFSAQTGRPLRYERLLAP FT VDGFLPTVQAFRESGGLGLNVTVPFKLEAYALAEARLSERARLAGAVNTLSWRDGAWHG FT CNTDGVGLVNDLLRLGVALAGARVLLVGAGGAARGVLQPLAAAGCARIHIVNRTAARAA FT ELAAAWRAAAPRTGTQVSAGALAQAAEPGGWDVAINATASSLQDAAPDLPGGLYAPDAL FT AYDMMYGARPTAFMRQAEADGAARCADGLGMLVGQAAESFHIWHGVRPDPGPVLLALRT FT ELLAAG" FT misc_feature 77089..77820 FT /note="HMMPfam hit to PF01488, Shikimate / quinate FT 5-dehydrogenase, score 1.1e-71" FT CDS 77901..78629 FT /transl_table=11 FT /gene="mtgA" FT /locus_tag="BPP3925" FT /product="monofunctional biosynthetic peptidoglycan FT transglycosylase" FT /EC_number="2.4.2.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0326" FT /db_xref="GOA:Q7W3V2" FT /db_xref="InterPro:IPR011812" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3V2" FT /protein_id="CAE39208.1" FT /translation="MPKPTARRLNWFRVITAVIMAVLCIAILYQLWMFSLVVWYAYRDP FT GSSAIMRQELARLRERDPEAELKYQWVPYDRISNTLKQAVVASEDANFTEHDGVEWDAI FT RKAWEYNQRQAERGRTKMRGGSTITQQLAKNLFLSGSRSYLRKGQELVLAYMIEHVMPK FT ERILELYLNVAEWGVGVFGAEAAARHYYNTSAARLGAGQAARLAAMLPNPRYYDRHRNT FT GYLNSRTATLTRRMRMVEIP" FT misc_feature 77901..78029 FT /note="Signal peptide predicted for BPP3925 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.722) with cleavage site FT probability 0.438 between residues 43 and 44" FT misc_feature 77934..78002 FT /note="1 probable transmembrane helix predicted for BPP3925 FT by TMHMM2.0 at aa 12-34" FT misc_feature 78045..78569 FT /note="HMMPfam hit to PF00912, Transglycosylase, score FT 5.3e-59" FT CDS 78636..79904 FT /transl_table=11 FT /locus_tag="BPP3926" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0325" FT /db_xref="GOA:Q7W3V1" FT /db_xref="InterPro:IPR005495" FT /db_xref="UniProtKB/TrEMBL:Q7W3V1" FT /protein_id="CAE39209.1" FT /translation="MRAPVTRGCANRRVFVNLSRFRALSAASPTMRTARRYLAREIYRS FT CAVVLLALLGLFTFFALVDDLDNVGDKFSMLALFYMQALALPTRLYDLLPIGLLIGAIL FT ALAGLAQRNELVILRVSGVSGMRLLGMLWVITIPLMIGATLLSEFVTPAAEIKSGEADL FT TFRGKAGGGRLNSGYWFKEPTPQNGTRIINIKTLLADGQVKDVTLYEFRSDLEMTALWT FT APNGRFSRGDLVLTDVSETRIDEHAPSALADAKQPKELPARVTKVPELKLDTTLSPERL FT LARVLTPERMSALTLVDYIEYLRHNQLQYDRQVVALWRKLVYPFTLLVMITVAAPIGFM FT QTRRGGVGAKVFIGILLGVGFFMLNQLALNVGMLSRWPPWITALGPNLGALLLAFGALS FT MMEYRHAMARCMQHRWPWRKVPA" FT misc_feature 78636..78824 FT /note="Signal peptide predicted for BPP3926 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.948) with cleavage site FT probability 0.941 between residues 63 and 64" FT misc_feature join(78756..78824,78897..78965,78978..79046,79596..79655, FT 79674..79742,79770..79838) FT /note="6 probable transmembrane helices predicted for FT BPP3926 by TMHMM2.0 at aa 41-63, 88-110, 115-137, 321-340, FT 347-369 and 379-401" FT CDS 79901..80734 FT /transl_table=11 FT /gene="apaH" FT /locus_tag="BPP3927" FT /product="diadenosine-tetraphosphatase" FT /EC_number="3.6.1.41" FT /note="ortholog of Bordetella pertussis (BX470248) BP0324" FT /db_xref="GOA:Q7W3V0" FT /db_xref="InterPro:IPR004843" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3V0" FT /protein_id="CAE39210.1" FT /translation="MKGSIWTIGDVQGCCAPLAELLAHPEIAGDTDSRFWFAGDLVNRG FT PQSLAVLRRIMAMGERCTAVLGNHDLHLLAAYAGVRKPSKSDTLDEVLQAPDAVDLIDW FT LRFRPLAHYEAGHLMVHAGVLAKWDVAKTLALAGEVEQALRGPNWRKALQKMYGNEPAT FT WKDDHTGGKRMRVIINALTRIRLCTPSGHMEFATKVAPGAWPAGLVPWFDVPNRATRDV FT TVVFGHWSTLGLLMRPDVICLDTGCVWGGALSALRLHDRKLVQVKCKRFQDPNGD" FT misc_feature 79907..80326 FT /note="HMMPfam hit to PF00149, Calcineurin-like FT phosphoesterase, score 5.2e-10" FT CDS complement(80771..81511) FT /transl_table=11 FT /locus_tag="BPP3928" FT /product="acyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0323" FT /db_xref="GOA:Q7W3U9" FT /db_xref="InterPro:IPR002123" FT /db_xref="UniProtKB/TrEMBL:Q7W3U9" FT /protein_id="CAE39211.1" FT /translation="MKLLRFVFRVFLVVPWVLFGLLCVTLVYRGLRQDQRARLNRCWSA FT CLMRLCGIAVHVRGAPRLRGGVLWVANHVSWIDIFVVNSVRATSFVAKSEIRAWPVIGY FT LAAGAGTLFIDRTQRHAVHAMGQSIHDCFARGDAVGLFPEGTTTEGFTTRPFHASLFEP FT ARAEGVDIQPVALRFMHRGQRSGFAAFVGEETLVANLWRVLGTTGLAVEVVFLEPLPTQ FT HAEGHQPTRLELSHMARNAIAGEL" FT misc_feature complement(80801..81343) FT /note="HMMPfam hit to PF01553, Acyltransferase, score FT 1.6e-16" FT misc_feature complement(81425..81490) FT /note="1 probable transmembrane helix predicted for BPP3928 FT by TMHMM2.0 at aa 7-29" FT CDS complement(81508..82806) FT /transl_table=11 FT /gene="pyrC" FT /gene_synonym="pyrC'" FT /gene_synonym="pyrX" FT /locus_tag="BPP3929" FT /product="dihydroorotase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0322" FT /db_xref="GOA:Q7W3U8" FT /db_xref="InterPro:IPR006680" FT /db_xref="UniProtKB/TrEMBL:Q7W3U8" FT /protein_id="CAE39212.1" FT /translation="MTVRTVRIAGGRLIDPASGADARADLYLADGRIAAIGQAPAGFQA FT QQHIDARGLAVLPGLVDLSARVHGAGLAPLACEMQAALAGGVTRLVVPPDTDPPLDEPG FT RVEMLRHRAHQAGQAQLHPLGALTEGLRGERLSEMAALAEAGCVAFSQAGLPVADTRVL FT WRAMQYARTFGLALWLRPLDPWMGRDGVAAAGAYASRLGLAEVPVQAETLALHTIFELQ FT RATGARVHLMRLSSAAGVALVRAARREGLPLTCDVAAHQIHLTDVDIGFFDSRFRLDPP FT LRGQRDRDAIVAGLADGTIDAICSDHRPVGDTGKLLPFAEAEAGASGLELLLSLTLKWA FT QRERVPLARALALVTSAPAAILRAATAALPPCGELAAGAPADLCLVDLDADWTAAPAAM FT RSRSVHTPFAGMMLPGRVRATLVAGRTVWETPA" FT misc_feature complement(81526..82668) FT /note="HMMPfam hit to PF00744, Dihydroorotase-like, score FT 1.5e-32" FT CDS complement(82803..83756) FT /transl_table=11 FT /gene="pyrB" FT /locus_tag="BPP3930" FT /product="aspartate carbamoyltransferase" FT /EC_number="2.1.3.2" FT /note="ortholog of Bordetella pertussis (BX470248) BP0321" FT /db_xref="GOA:Q7W3U7" FT /db_xref="InterPro:IPR002082" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3U7" FT /protein_id="CAE39213.1" FT /translation="MLNPQLNRHGELIHLLSTEGLPRRIIEQILDLAATFVPAPGQEFP FT KLPLLHGKSVFNLFFENSTRTRTTFEIAAKRLSADVVNLNIAASSTSKGESLLDTIANL FT SAMQAGLFVVRHGASGAPYLIAQHVAPHVHVINAGDGRHAHPTQALLDMYTIRHHKGDF FT NQLTVAIVGDVLHSRVARSDIHALTTLGVPEVRVVAPATLLPEGLAQMGVRVCTDMEEG FT LRDADVVIMLRLQNERMRGALLPSAHEYFKHYGLTQARLALARPDAIVMHPGPMNRGVE FT IASEVADSGQAVILDQVTFGIAVRMAAMSLVAGVRP" FT misc_feature complement(82818..83270) FT /note="HMMPfam hit to PF00185, Aspartate/ornithine FT carbamoyltransferase, Asp/Orn binding domain, score FT 9.6e-23" FT misc_feature complement(83277..83717) FT /note="HMMPfam hit to PF02729, Aspartate/ornithine FT carbamoyltransferase, carbamoyl-P binding domain, score FT 7.2e-30" FT misc_feature complement(83559..83582) FT /note="PS00097 Aspartate and ornithine FT carbamoyltransferases signature." FT CDS complement(83770..84171) FT /transl_table=11 FT /locus_tag="BPP3931" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0320" FT /db_xref="GOA:Q7W3U6" FT /db_xref="HSSP:1OVQ" FT /db_xref="InterPro:IPR006641" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3U6" FT /protein_id="CAE39214.1" FT /translation="MPEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSETRAARFGR FT IGQLLQEWQPQRAVVGLPLTLDGQEQPASARARRFANQLHGRFGLAVELVDERGSSMEA FT QQLLGTHAADDAVAAAVILQRYLDTLPQP" FT misc_feature complement(83785..84162) FT /note="HMMPfam hit to PF03652, Uncharacterised protein FT family (UPF0081), score 9.2e-40" FT CDS complement(84164..84844) FT /transl_table=11 FT /locus_tag="BPP3932" FT /product="putative transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0319" FT /db_xref="InterPro:IPR003774" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3U5" FT /protein_id="CAE39215.1" FT /translation="MMAAPAAAFAGLPRLSRLPATKGAAMTDSHRPDADDIPDDDELST FT DFSNQFLLAMPGVVEGSLAGTVIYICEHTRRGALGLVINRPTDLTLATLFERIDLKLEI FT GPVKDEMVFFGGPVQTDRGFVLHAPAGDYTSSINLGELALTTSRDVLQAVADGNGPARM FT LVTLGYAGWGAGQLESEMAQNSWLSVGADSHIIFDVAPEDRYPAALKLLGVDPVMLAGG FT AGHA" FT misc_feature complement(84170..84712) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02622, Uncharacterized ACR, FT COG1678, score 4.2e-52" FT CDS complement(84857..85021) FT /transl_table=11 FT /gene="rubA" FT /locus_tag="BPP3933" FT /product="rubredoxin" FT /note="ortholog of Bordetella pertussis (BX470248) BP0318" FT /db_xref="GOA:Q7W3U4" FT /db_xref="HSSP:1BRF" FT /db_xref="InterPro:IPR018527" FT /db_xref="UniProtKB/TrEMBL:Q7W3U4" FT /protein_id="CAE39216.1" FT /translation="MRTWMCLICGWVYDEEAGLPDEGIAPGTRWEDVPPNWVCPECGAR FT KEDFELMEI" FT misc_feature complement(84875..85021) FT /note="HMMPfam hit to PF00301, Rubredoxin, score 2.4e-26" FT misc_feature complement(84893..84925) FT /note="PS00202 Rubredoxin signature." FT CDS 85138..85986 FT /transl_table=11 FT /gene="thiD" FT /locus_tag="BPP3934" FT /product="phosphomethylpyrimidine kinase" FT /EC_number="2.7.4.7" FT /note="ortholog of Bordetella pertussis (BX470248) BP0317" FT /db_xref="GOA:Q7W3U3" FT /db_xref="InterPro:IPR013749" FT /db_xref="UniProtKB/TrEMBL:Q7W3U3" FT /protein_id="CAE39217.1" FT /translation="MRPDYPFFAVVPVLDSVTPPLVLIIGPVDPSGADGLPADAVSCAR FT LGCHALAAVTALTVQDTAGIEEVHPVAPELLDDQARCLLEDMSVQAIKVGALLSAEAAS FT VAAQIAADYSHVPLVLHLGQRTPLPQDAADQDDADDLLAATLELVLPQTDLVVVEHVRL FT AQWQADGSIDTSGAPSPAHALLAGGAQWALVLGSPVRPGHQVNMLVGPEGQTSTWPWQA FT PPDRNGDTGGVAAIAAAAMLAQGMEMPRAVEQALAHAERTIAASFLPGMGRRLPNRVAQ FT S" FT CDS 85983..86636 FT /transl_table=11 FT /gene="thiE" FT /locus_tag="BPP3935" FT /product="thiamine-phosphate pyrophosphorylase" FT /EC_number="2.5.1.3" FT /note="ortholog of Bordetella pertussis (BX470248) BP0316" FT /db_xref="GOA:Q7W3U2" FT /db_xref="InterPro:IPR003733" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3U2" FT /protein_id="CAE39218.1" FT /translation="MKTLRFPAGLYGITPEWDDTDRLLAAVRAAAAGGMTALQLRRKLA FT DERLRAAQARALAPLCRELGVVFLVNDHWKLALDVGADGAHLGRDDADPATVRAQAGAG FT LLLGVSCYNDLRRADALLAAGADYVAFGTVFASPTKPEAVHAPLQTLTEARARVLACPA FT PRPAVVAIGGITPANVSQVAQAGADSAAVISGLFEAPDIQAAARACAAAFSVNP" FT misc_feature 86001..86621 FT /note="HMMPfam hit to PF02581, Thiamine monophosphate FT synthase/TENI, score 4.4e-37" FT CDS 86653..87936 FT /transl_table=11 FT /gene="hemL" FT /gene_synonym="gsa" FT /gene_synonym="popC" FT /locus_tag="BPP3936" FT /product="glutamate-1-semialdehyde 2,1-aminomutase" FT /EC_number="5.4.3.8" FT /note="ortholog of Bordetella pertussis (BX470248) BP0315" FT /db_xref="GOA:Q7W3U1" FT /db_xref="HSSP:1DKA" FT /db_xref="InterPro:IPR015421" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3U1" FT /protein_id="CAE39219.1" FT /translation="MSTNAELFDRACRSIPGGVNSPVRAFRSVGGTPRFIQRAQGPYVW FT DAEGKQYIDYVGSWGPAILGHAHPEVVRAVQEAAVHGLSFGAPTEAEVELAEMLIARLP FT SLEQVRLVSSGTEATMTAIRLARGATGRHKIIKFEGCYHGHSDSLLVKAGSGLLTFGNP FT SSAGVPPEFVAHTLPLEFNNLAAVDAAFSQHGAEIACVIVEPVAGNMNLIKPAEGFLAG FT LRELCTRHGAVLIFDEVMTGFRVGPQGVQGLTGVRPDLTTLAKVIGGGMPVGAFGGRAD FT LMAHITPLGGVYQAGTLSGNPVAVAAGLATMRLIGEPGFYERLSAQTARLAQGLQERAR FT AAGVPFSADAIGGMFGLYFGDRVPASFAEVSACDTEAFKRFFHAMLERGIHFAPSAFEA FT GFVSATHDDAVIDATLEAAEQVFATLRA" FT misc_feature 86719..87930 FT /note="HMMPfam hit to PF00202, Aminotransferase class-III, FT score 1.1e-110" FT misc_feature 87352..87462 FT /note="PS00600 Aminotransferases class-III FT pyridoxal-phosphate attachment site." FT CDS 88177..89802 FT /transl_table=11 FT /locus_tag="BPP3937" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0314" FT /db_xref="InterPro:IPR005646" FT /db_xref="UniProtKB/TrEMBL:Q7W3U0" FT /protein_id="CAE39220.1" FT /translation="MTIANALQLELDEATCVLSAAYAPTGENDTLPTWDTLVAAVQARG FT WPATVLDQISAIVFIEQCRDTAGPVEACIGEVRNGTFELEVAEDRMSAQLTLRAPKGGQ FT PVGESDLLAGLQAHGIVHGLIPEALRQALERGACEALEIARGTLPEAGEPARFESLLDA FT LKTRLSEDDENAIIDYRNLGDLTLVSAGTPLMRRIPATPGQPGTDVLGGPVAPPTVADP FT PFVPKLNGVEVDPEDPGLLRAAIAGSPMLVQHGATVNSLVEVPAVDLSSGNIDFEGTLR FT VKGDITAGMHVRVSGDVVVNGTIEAAHVEAGGNVTVNGGIIGSAEGVADSRGGSRMARI FT VSGGSVKARFIDNAQVRAEKNVAAEREIRQSTVTAGETITVGPPGSQQGVITGGTAHAY FT KSVHAGTLGSMAGIPTVVRAGLNPHANAKRAALETRARELEEEKAKLEKLILFLHNNPA FT KNVNNMSERARQTHAKISADLVELQAEDARLAKELQPLETAMIVASRRFFGGVTLHLGV FT KVTEFLEDQVGGKAVLEQGELAIR" FT CDS complement(89896..90297) FT /transl_table=11 FT /locus_tag="BPP3938" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0313" FT /db_xref="HSSP:1J7H" FT /db_xref="InterPro:IPR006175" FT /db_xref="UniProtKB/TrEMBL:Q7W3T9" FT /protein_id="CAE39221.1" FT /translation="MKILQPPDWLAPRGYSNGTLTEMAVGSKLVFVGGQVGWNGQQQFE FT TDDFAEQVRQTLVNVLAIMAEGGAGPQHIVRMTWYVKNKAEYVASYPEIGKHYRELIGR FT HFPAMTAVEVADLIEDRAKVEIEVTAVIP" FT misc_feature complement(89902..90276) FT /note="HMMPfam hit to PF01042, YjgF family, score 9.2e-18" FT CDS complement(90322..90756) FT /transl_table=11 FT /locus_tag="BPP3939" FT /product="probable 4-hydroxybenzoyl CoA thioesterase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0312" FT /db_xref="UniProtKB/TrEMBL:Q7W3T8" FT /protein_id="CAE39222.1" FT /translation="MAEPFVSEVEVRFRHCDPAGIVFYPRYFEMINDFVEEWFDKGMGL FT PFHALHVDRHIGTPLASVQCDFSAPSRWHERLRQELSVRRIGGASFRADVRFLGPDDRL FT RLSADLTIVTVDLRSMRSTPLPDDLRARMQAFLSPQARDA" FT misc_feature complement(90352..90702) FT /note="HMMPfam hit to PF03061, 4-hydroxybenzoyl-CoA FT thioesterase, score 6.9e-15" FT CDS complement(90758..92407) FT /transl_table=11 FT /locus_tag="BPP3940" FT /product="probable acid-coenzyme A ligase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0311" FT /db_xref="GOA:Q7W3T7" FT /db_xref="InterPro:IPR000873" FT /db_xref="UniProtKB/TrEMBL:Q7W3T7" FT /protein_id="CAE39223.1" FT /translation="MEPSAHLDSFARDNLPPASEWPEFLLDGPDVAYPKRFNCAAELVD FT AMVRQGHGERVALRWRQDERIETMTYGQLQALTNRIARVLVEDMGLVPGNRLLLRGPNN FT PMMAAAWLGAIKAGLVTVPTMPLLRAKELRQIIEKAQVQAVLCDARLKDEALHCAAPAH FT EHYCPGLGQVMLFNDGAPDALDARAAAKPEDFPACDTAADDVCLIAFTSGTTGAPKGCM FT HFHRDVLAMCDLFPRHVIRPGPDDIFCGTPPLAFTFGLGGLLCFPLRVGASAVLAEKLS FT PDTLLALIHDFRATISFTAPTFYRQMAALAPKYDISSLRKSVSAGEALPDATRQLWRQA FT TGIEMIDGIGGTEMIHVFVSSPPEEVRQGAIGKAVPGYVAEVVDEQMRPVPNGTVGRLA FT IKGPTGCRYLADERQQRFVQQGWNLPGDTFLRDDDGYFFYQARNDDMIISAGYNIAGPE FT VEDALLRHEAVAECGVVGAPDDDRGQLVKAYVVFKPGYEPDDALAAALQAFVKAGIAPY FT KYPRAIEFVDALPRIETGKLQRFALRRMAAEG" FT misc_feature complement(90986..92200) FT /note="HMMPfam hit to PF00501, AMP-binding enzyme, score FT 4.5e-98" FT misc_feature complement(91751..91786) FT /note="PS00455 Putative AMP-binding domain signature." FT CDS complement(92448..93617) FT /transl_table=11 FT /locus_tag="BPP3941" FT /product="putative acyl-CoA dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0310" FT /db_xref="GOA:Q7W3T6" FT /db_xref="HSSP:1JQI" FT /db_xref="InterPro:IPR006092" FT /db_xref="UniProtKB/TrEMBL:Q7W3T6" FT /protein_id="CAE39224.1" FT /translation="MPDLSWQDWPFFDPLHRELARELEAWCGPALAAIDHRDTDAACCA FT LVRSLGQAGWLRYAVPAGPGGGWGGRLPKIDSRAVCILRETLARHDGLADFAFAMQGLG FT SGAISLMGSDALRQQYLPPVARGEAIAAFALSEPEAGSDVAALACEARADGDGYVLNGE FT KTWISNGGIADFYCVFARTGEAPGARGISAFVVDAGTPGLEIAERIDLIAPHPLARLRF FT ADCRIPASRRLGEAGQGFKLAMMTLDIFRASVAAAALGFARRALDEGLARARGRRMFGQ FT TLADLQLTQAALGDMATAVDASALLTYRAAWMRDVQEVRTTREAAMAKMTATESAQAVI FT DRALQMFGGAGVVAGATVERLYREIRALRIYEGATEVQKLIIARELLKS" FT misc_feature complement(92457..92909) FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain, score 1.7e-56" FT misc_feature complement(92919..93218) FT /note="HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, FT middle domain, score 2e-30" FT misc_feature complement(93180..93218) FT /note="PS00072 Acyl-CoA dehydrogenases signature 1." FT CDS complement(join(93620..93820,93824..94420)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP3942" FT /product="putative enoyl-CoA hydratase/isomerase FT (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0309" FT /db_xref="PSEUDO:CAE39225.1" FT misc_feature complement(join(93794..93820,93824..94315)) FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family, score 7.1e-22" FT misc_feature complement(93986..94048) FT /note="PS00166 Enoyl-CoA hydratase/isomerase signature." FT CDS complement(94442..95233) FT /transl_table=11 FT /locus_tag="BPP3943" FT /product="probable short chain dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0308" FT /db_xref="GOA:Q7W3T5" FT /db_xref="HSSP:1Q7B" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7W3T5" FT /protein_id="CAE39226.1" FT /translation="MSTSTQALAGRHALVTGGARGIGLACARALLARGASVTLLGRDGG FT ALDAAADQLARAGRVQTASADVADAASVRAAFEQAARALGPVAILVNNAGQAVSQRFDR FT TDEALWQRMLAVNLTGTFHCIQAALPGMLDGGWGRVVNVASTAGLIGYAYVSAYCAAKH FT GVVGLTRALALETARKGVTVNAVCPGYTETDIVRGAVANIVEKTGLSEAEARATLAERN FT PQGRLINPEEVAETVAWLALPASAAINGQAIAVDGGEVMTG" FT misc_feature complement(94457..95209) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase, FT score 5.6e-86" FT misc_feature complement(94715..94801) FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT CDS complement(95230..97581) FT /transl_table=11 FT /locus_tag="BPP3944" FT /product="probable bifunctional hydroxylase/oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0306" FT /db_xref="GOA:Q7W3T4" FT /db_xref="HSSP:1GWJ" FT /db_xref="InterPro:IPR003042" FT /db_xref="UniProtKB/TrEMBL:Q7W3T4" FT /protein_id="CAE39227.1" FT /translation="MKIVCLGGGPAGLYFGLLMKLQDPANEVTVIERNRPYDTFGWGVV FT FSDATMDNLRQADPVSAKTIGDAFNHWDDIEIHYRDRSIRTSGHGFIGIGRKHLLNILQ FT ARCEEVGVKLVFETFVQDDQALARDYDADLVIAADGINSVVRTRYADTFTPDIDQRRCR FT FVWLGTTKVFDAFTFAFVQNEHGWFQAHAYRFEDGLSTFIVETPEETWQSAGIEGMSQE FT DGIAYCERLFAPWLDGHRLISNAKHIRGAAIWIRFPRVICPHWVRWNRLQTPRGERDVP FT VVLMGDAAHTAHFSIGSGTKLALEDAIELARCLDGRRGDLRGALQHYEDVRSVEVLKIQ FT NAARNSTEWFENVRRYANLEPEQFAYSLLTRSQRISHENLRLRDAAWLQGYEAWIAERA FT GAGPAPGAQAPLPMLTPFQARSVRLANRIVVSPMAMYSCVDGVPGEFHLVHLGARALGG FT AGLVMVEMTCTSPDARITPGCPGLWNDEQAGAFGRIVDFVHGNSAARIGIQLGHAGRKG FT STQLGWQQMDHPLPEGNWPLLSASALPYLPGVSQTPRAMTRADMDRVREDFAAAARRAA FT RAGFDWLELHCAHGYLLSSFISPLTNQRDDEYGGSLENRLRYPLEVFRAVRQAWPAELP FT MSVRISAHDWVEGGITADDAVEIARHFKAAGADMIDCSSGQVSPDQQPVYGRMYQTPFA FT DRVRNEAGIATIAVGAIFEADHANGIIASGRADLCALARPHLADAAWTLREAARVGYRD FT VHWPDQYVAGKRQLETNFERAAMLAQLDIK" FT misc_feature complement(95320..96348) FT /note="HMMPfam hit to PF00724, NADH:flavin oxidoreductase / FT NADH oxidase family, score 5.8e-69" FT misc_feature complement(95791..95829) FT /note="PS00383 Tyrosine specific protein phosphatases FT active site." FT misc_feature complement(96040..96084) FT /note="PS00399 ATP-citrate lyase / succinyl-CoA ligases FT family active site." FT misc_feature complement(96550..97191) FT /note="HMMPfam hit to PF01360, Monooxygenase, score 2e-09" FT CDS complement(97787..98380) FT /transl_table=11 FT /locus_tag="BPP3945" FT /product="high-affinity branched-chain amino acid FT transporter, ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0305" FT /db_xref="GOA:Q7W3T3" FT /db_xref="HSSP:1JI0" FT /db_xref="InterPro:IPR003439" FT /db_xref="UniProtKB/TrEMBL:Q7W3T3" FT /protein_id="CAE39228.1" FT /translation="MGKTTLLRTLFGQLPLRAGSVRFAGQEIGGWSPDRIARAGLAIVP FT EGRQCFPNLTVREHLTAFVAARNPSIGQPWTPQRVFELFPRLGERAGNMGNQLSGGEQQ FT MLAIGRALVTNPRLLILDEATEGLAPKIREEIWTCLARLREAGQTILVIDKYVERLLGL FT ADRHVILERGKVVWKGDSAALDADRGLWERYLGV" FT misc_feature complement(97862..98377) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1e-28" FT misc_feature complement(98045..98089) FT /note="PS00211 ABC transporters family signature." FT CDS complement(98483..99277) FT /transl_table=11 FT /locus_tag="BPP3946" FT /product="putative branched-chain amino acid transporter, FT ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0304" FT /db_xref="GOA:Q7W3T2" FT /db_xref="HSSP:1G6H" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W3T2" FT /protein_id="CAE39229.1" FT /translation="MNAPAASPALRADGLVRRFGALVATDRVSLTLAPGEIHALIGPNG FT AGKSTLIHLLSGTLPADAGSLKMGERDITALNAHQRVAAGLSRSYQITNIFKSFSVLDN FT LLLAVQARAGSSFRFWRRRAAERELYDAAHELARQCAIDAGMLQRPAGTLPHGEQRKVE FT FALALAARPSVLLLDEPMAGMGPDETLRLTELIETLRGRAAMLLVEHDMQAVFRLADRI FT SVLVYGRVIATGTPEQIRANPEVRQAYLGDEEQTAALEGARC" FT misc_feature complement(98594..99175) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 2.4e-36" FT misc_feature complement(99131..99154) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(99274..100239) FT /transl_table=11 FT /locus_tag="BPP3947" FT /product="probable branched-chain amino acid transport FT system, permease component" FT /note="ortholog of Bordetella pertussis (BX470248) BP0303" FT /db_xref="GOA:Q7W3T1" FT /db_xref="InterPro:IPR001851" FT /db_xref="UniProtKB/TrEMBL:Q7W3T1" FT /protein_id="CAE39230.1" FT /translation="MHRSTLWTLALLAALALFPLVAPALGLDFYISFVRRVLIYALAAT FT SLNLILGYGGMVALGHAAFFGAGAYAVGILGAAGITSALLAWPAAIALAGALAWITGAI FT SLRTRGVYFIMITLAFAQMVYYVFISLRQYGGEDGLNLSGYSTLPGLDLANDLTFYYLV FT LVLFAVLMGVFGRVVDSRFGAALQGIRENESRMESLGYPVYRLKLTAFVISGAAAGLAG FT ALLANHNLFISPSLMHWTQSANLLIMVLVGGIGLRYGGVAGAVVMLVLEEVLRQWTEYW FT HLPLGVLLLCVVLDAPRGLVGLVGPWFAGRAGADSTRAGT" FT misc_feature complement(99325..100164) FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component, score 2.7e-13" FT misc_feature complement(join(99433..99498,99544..99609,99715..99780, FT 99841..99906,99922..99987,100000..100056,100063..100128, FT 100159..100224)) FT /note="8 probable transmembrane helices predicted for FT BPP3947 by TMHMM2.0 at aa 5-27, 37-59, 61-80, 84-106, FT 111-133, 153-175, 210-232 and 247-269" FT misc_feature complement(100162..100239) FT /note="Signal peptide predicted for BPP3947 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.617 between residues 26 and 27" FT CDS complement(join(100243..100263,100263..101159)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP3948" FT /product="probable branched-chain amino acid transport FT system, permease component (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0302" FT /db_xref="PSEUDO:CAE39231.1" FT misc_feature complement(join(100250..100263,100263..101144)) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component, score 4.3e-17" FT misc_feature complement(join(100257..100322,100368..100433, FT 100449..100514,100545..100610,100674..100739, FT 100800..100865,100905..100970,101058..101123)) FT /note="8 probable transmembrane helices predicted for FT BPP3948 by TMHMM2.0 at aa 12-34, 63-85, 98-120, 140-162, FT 183-205, 215-237, 242-264 and 279-301" FT misc_feature complement(101004..101159) FT /note="Signal peptide predicted for BPP3948 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.634) with cleavage site FT probability 0.413 between residues 52 and 53" FT CDS complement(101256..102419) FT /transl_table=11 FT /locus_tag="BPP3949" FT /product="putative ABC transporter substrate binding FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0301" FT /db_xref="InterPro:IPR001828" FT /db_xref="UniProtKB/TrEMBL:Q7W3T0" FT /protein_id="CAE39232.1" FT /translation="MRLIPSLLAALALAPGLANADPIKVGIANDISGPFAALGAEARDG FT FNLAIKELGGKLGGQQAEFLQTDMGGNPDQARQLVTRYIQREKVDFFTGPIGSNVALAV FT GPALFAAKIPYLSNNPGPSQYAGAQCNKFWFGNSYQNDAFHEAAGKVAADRGYKKVFIM FT APDYPAGKDALTGFKRGYKTAVAEELYTKLGQIDYAAELAQIRAAKPDAVYIFLPGGMG FT INFVKQFVSTGLAQGTALVGPGFSADEDVIQAVGEPMLGMVNTAQWAHDLDVPQNKKFV FT EAFRKEYNGRYPSVYAAQAYDVIMSIDAAVKQAGGKASDRDAIVKALEQADYPSVRGSF FT TYGKNHYPIQAYYARVVEKDGSGRITNKLTGKVFDKYQDVYVGDCKL" FT misc_feature complement(102360..102419) FT /note="Signal peptide predicted for BPP3949 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.996 between residues 20 and 21" FT CDS 102642..103532 FT /transl_table=11 FT /locus_tag="BPP3950" FT /product="putative esterase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0300" FT /db_xref="GOA:Q7W3S9" FT /db_xref="InterPro:IPR002018" FT /db_xref="UniProtKB/TrEMBL:Q7W3S9" FT /protein_id="CAE39233.1" FT /translation="MAAIYRHYDRAALDVQYNARATVPDIQPILKRYAEASQQARDALP FT CTLDVPYGDHPDELLDIFPADGVRAAPVLVYIHGGYWRALNKSDSCNMAPAFTRAGALV FT VAVNYSLAPAVTLDRIVDQNRRALAWIHRHIAEYGGDPARITICGSSAGGHLVGALLAG FT GWHGQYGAPEDIVHSAAPLSGLFDLRPLVHTHINEWMRMSPADAERNSPALHMPRRGCP FT IVVSYGETETDEFKRQSDDFLRDWQALGYPGRYIPMPGTNHYDIVLTLNEPAGALTQAI FT FALMGLAPPPTPSIR" FT CDS 103536..104039 FT /transl_table=11 FT /locus_tag="BPP3951" FT /product="MarR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0299" FT /db_xref="GOA:Q7W3S8" FT /db_xref="InterPro:IPR000835" FT /db_xref="UniProtKB/TrEMBL:Q7W3S8" FT /protein_id="CAE39234.1" FT /translation="MIDTPDLETRAAPEDHHALRLWLRMLTCCNLIESEIRSRLRTEFD FT TTLPRFDLMAQLQRAPKGMKMGELSRHMMVTNGNITGITDQLEKEGLVVRTKVESDRRS FT SVLKLTPQGKRTFARMARAHESWVTGMLDDLPEASRHAMYKALGELKLQVVAHRALAQR FT DGAS" FT misc_feature 103671..103985 FT /note="HMMPfam hit to PF01047, MarR family, score 1e-20" FT misc_feature 103770..103874 FT /note="PS01117 Bacterial regulatory proteins, marR family FT signature." FT CDS 104082..105080 FT /transl_table=11 FT /locus_tag="BPP3952" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0298" FT /db_xref="UniProtKB/TrEMBL:Q7W3S7" FT /protein_id="CAE39235.1" FT /translation="MISLSVPGGNFYLAMALSLFCLSTLLTWAVTLAANRGARRWLAAH FT RRLGPALMVLLAVAGAIFPYQHFSQWRQAQREAREQAARRAVLEAARRVDGIDMPAGTE FT LRLAEPGRLDSFQGADFPVPAHVAGLRVTRLVRHGAAPGGRQGWSVTLDGNQRIDGWLC FT SRGHQVELAVRDGTPAFAGCHLAAGNEIGGAAVPPGAWVAARQPGPWLLRTEGSDPLDV FT GRLPLLKVDMTLDDRRQVAGFEGLLARELTLGEMTYPTGTRVASAPAGLAQAQAGDLLF FT SPSRGRAARRGAGTEIVAGKSVLQAPDGTVRAVLANRDAGVLDFAAVRMAP" FT misc_feature 104082..104168 FT /note="Signal peptide predicted for BPP3952 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.992) with cleavage site FT probability 0.734 between residues 29 and 30" FT misc_feature join(104118..104186,104223..104276) FT /note="2 probable transmembrane helices predicted for FT BPP3952 by TMHMM2.0 at aa 13-35 and 48-65" FT CDS 105148..106374 FT /transl_table=11 FT /gene="argJ" FT /locus_tag="BPP3953" FT /product="arginine biosynthesis bifunctional protein" FT /EC_number="2.3.1.35" FT /EC_number="2.3.1.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP3807" FT /db_xref="GOA:Q7W3S6" FT /db_xref="InterPro:IPR002813" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3S6" FT /protein_id="CAE39236.1" FT /translation="MAVNLQIPSESEILPVAGVEIGVAEAGIRKAGRRDLTVFRLAPGS FT AVAGVFTRNRFRAAPVQVCEAHLAQGGPIRALVVNTGNANAGTGAPGLKNAQDTCAALG FT KLLDVPAEQILPFSTGVILEPLPMDRLTAGLPAAVADLRADGWYGAAHGIMTTDTLPKI FT HSRRVDIGGKTVTITGISKGAGMIRPNMATMLGFLATDAGIAQPLLRQLAIELADVSFN FT RITVDGDTSTNDSFILIATGQAGVTVDSAGDAAYAALRDALAAAATDLAQKIVRDAEGA FT TKFMTIRVEEAGNTEEALKVAYAVAHSPLVKTAFFASDPNLGRILAAIGYAGIDDLDVS FT RLRLWLGDVLVAVDGGRNPDYQEADGQRVMKQAEILVRIALGRGQVADTVYTCDFSHEY FT VTINADYRS" FT misc_feature 105202..106368 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01960, ArgJ family, score 1.4e-175" FT CDS 106574..107440 FT /transl_table=11 FT /locus_tag="BPP3954" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3808" FT /db_xref="GOA:Q7W3S5" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W3S5" FT /protein_id="CAE39237.1" FT /translation="MTATDLTPLLARAKRVLAQLEAWLPPAPPDIDWSAHAYRWRKRGS FT RGWLDAVRHVARIELDDLQHIERQKDIIDRNTRQFLESKPANNVLMTGARGTGKSSLVK FT AMLAAYGDRGLRLIEVDKSDLGDLADIVELVAARPERYIVFCDDLSFEEGEAGYKALKS FT VLDGSVAASGDNVLIYATSNRRHLMPEYMSENLAAKHQPDGEIHPGETVEEKISLSERF FT GLWLSFYPFKQDDYLDIVYHWLRELNCPADQIEASRTEALQWTLERGSRSGRVAYQFAR FT DWAARHV" FT misc_feature 106850..106873 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 107433..108395 FT /transl_table=11 FT /locus_tag="BPP3955" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3809" FT /db_xref="GOA:Q7W3S4" FT /db_xref="HSSP:1PUQ" FT /db_xref="InterPro:IPR020084" FT /db_xref="UniProtKB/TrEMBL:Q7W3S4" FT /protein_id="CAE39238.1" FT /translation="MSEKIVDVAAGLILRPDGQLLLGQRPEGKPWAGWWELPGGKLEPG FT ETVLQALARELHEELGIRVTEAHPWVTYVHVYPHTTVRLAFCHVTGWEGEPRGLENQRL FT EWVDPARAHEVGDLLPAALPPLRWLQLPTAYAISAIGAPAALADFTARLRQALDGGLKL FT VLLREPDWPGGADAASLRDAMQAILAQCRAAGARLLVSSRHPQAWWREADGVHLTARDA FT QALKQRPALPEGALVGVSAHGHAEIVHARDLGADFAVLGPVLATASHPEQAPLGWPGFA FT AGIRDAGMPVYALGGQSPATLAEARLHGAHGIAGIRGLL" FT misc_feature 107445..107825 FT /note="HMMPfam hit to PF00293, NUDIX domain, score 9.6e-23" FT misc_feature 107550..107609 FT /note="PS00893 mutT domain signature." FT CDS complement(108406..109908) FT /transl_table=11 FT /locus_tag="BPP3956" FT /product="putative outer membrane efflux protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3812" FT /db_xref="GOA:Q7W3S3" FT /db_xref="InterPro:IPR010131" FT /db_xref="UniProtKB/TrEMBL:Q7W3S3" FT /protein_id="CAE39239.1" FT /translation="MIRMPGFRFSVPPRRRLAVAALCAALGGCAVGPDYQRPAIDVGAA FT YKEAAAPQPGWTPAQPSDESARGQWWQVYGDPVLDGLVQQLNQGNYSVAQAEANYRQAQ FT ALVRNARAGFFPTIGAGADVTRSGSGGGSGAGSNGSSVGNQYSLSGSVSWEVDVWGRVR FT REVESSRAEAQASAADLAATRLSAQAALVQNYLQLRVLDEQKRLLDATVLAYERSLRLT FT QNRYEAGVVGKSDVAVARTQLENTRAQSIDLDWQRGQFEHAIAVLMGQAPSRFALPAQP FT FAQQLPDIPAGLPSQLLERRPDVAAAERRAAAANAQIGVAQAAWFPDLTLSASGGFRSG FT QFAEWLTAPARFWTLGPALAMTLFDGGARSARVEQARAAYDAQAAAYRQSVLTALREVE FT DYLVQLRVMEHEQQVQRNALESARESLRLARNQYEQGLIDYLSVAVLETTALNTERNAI FT SLLGSRLNASVQLIAALGGGWQGLPAEAAASAAAEPSAPSAP" FT misc_feature complement(108448..109041) FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein, score 6.4e-50" FT misc_feature complement(109069..109674) FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein, score 1.3e-39" FT misc_feature complement(109813..109908) FT /note="Signal peptide predicted for BPP3956 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.987) with cleavage site FT probability 0.542 between residues 32 and 33" FT misc_feature complement(109822..109854) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(109905..113012) FT /transl_table=11 FT /locus_tag="BPP3957" FT /product="AcrB/AcrD/AcrF family protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3813" FT /db_xref="GOA:Q7W3S2" FT /db_xref="HSSP:1IWG" FT /db_xref="InterPro:IPR001036" FT /db_xref="UniProtKB/TrEMBL:Q7W3S2" FT /protein_id="CAE39240.1" FT /translation="MILSAPFIVRPVATTLLCLGVVLAGLLAYRLLPVAPLPQVDIPTI FT SVSASLPGASPETMASSVATPLERSLGSIAGVTEMTSRSSQGSTRITLQFDLSRDVDGA FT ARDVQAAINAARSLLPTSLRSNPTYHKANPSAAPIMTLAMTSATLGQGKLYDLASTIVA FT QKLAQVNGVGEVTVGGSSLPAVRVNLIPGALANRGVSLDEVRQALSSANANRPKGMVEN FT DQYHWQVMASDQLDRAEQYRPLIVAWRDGAAVRLSDVASVEDSVEDLYQTGFYNDRKAI FT LMIVRRQADANIIETVDAVRAQLPQLAALLPGDVDLTVAQDRTPSIRASLHEAELTLVI FT AVGLVVLVVLLFLRRLRAAFIPSVAVPVSLIGTFCVMYLCGYTLNTISLMALIVATGFV FT VDDAIVVLENIMRHIERGATPMRAALRGSREVGFTVLSMSLSLVAVFIPILLMGGVAGR FT LFREFAVTLSASILVSLVVSLTLTPMMCARLLRAEPAAPRPPGRIGRLWTRLYGGMQGG FT YERSLGWALAHARLMMLILAATIGLNVYLYMVVPKGFFPQQDTGQLLGFFRGDQGTSFQ FT ATVPKLEYFRKVILADPAVQSVTAYAGGRGGSNSSFMQIQLKPLEERGVSADTVINRLR FT GRLQNEPGARMFLVAQQDIHIGGRQSSGSYDYTLMSGDLALLREWMPRVQRAMAALPEI FT TDVDADVEDKGRQIDLVIDRDAATRLGVSMATISAVLNNSFSQRQVSVIYGPLNQYHVV FT MGVDPRFAQDIESLKQVHVIAADGQRVPLAAFAQLKVANAPLSVSHQGLFVADTISFSL FT SPGVSLDQATGAIDAAVARIGLPSDQIQAGFQGTAAELQKTLARQPWLILAALVTMYIV FT LGILYESLVHPLTILSTLPSAGIGALLALMLLGHEFTLIALIGVFLLIGIVKKNAIMMV FT DFALEAERRDGLDARAAILRACLTRFRPIMMTTMAAIFGALPLMLASGPGVEMRRPLGI FT TIVGGLVLSQILTLYTTPVVYLYLDRFRLWAARRRAARSAPDPTRP" FT misc_feature complement(109971..113006) FT /note="HMMPfam hit to PF00873, AcrB/AcrD/AcrF family, score FT 0" FT misc_feature complement(join(109974..110039,110070..110135, FT 110247..110312,110373..110438,111375..111440, FT 111558..111623,111645..111710,111867..111932, FT 111954..112004,112926..112991)) FT /note="10 probable transmembrane helices predicted for FT BPP3957 by TMHMM2.0 at aa 7-29, 336-353, 360-382, 434-456, FT 463-485, 524-546, 858-880, 900-922, 959-981 and 991-1013" FT misc_feature complement(112941..113012) FT /note="Signal peptide predicted for BPP3957 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.620) with cleavage site FT probability 0.370 between residues 24 and 25" FT CDS complement(113009..116110) FT /transl_table=11 FT /locus_tag="BPP3958" FT /product="AcrB/AcrD/AcrF family protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3814" FT /db_xref="GOA:Q7W3S1" FT /db_xref="HSSP:1IWG" FT /db_xref="InterPro:IPR001036" FT /db_xref="UniProtKB/TrEMBL:Q7W3S1" FT /protein_id="CAE39241.1" FT /translation="MSPSRLFILRPVATALSMVAILIAGLIAYRLLPVSALPEVDYPTI FT QVVTLYPGASPDVMTSLVTSPLERQFGQMPGLNQMSSTSSGGASVITLQFSLDLSLDVA FT EQQVQAAINAASNLLPNDLPVPPTYNKVNPADAAVLTLAVTSPTMPLPQVRDLVDTRMA FT QRLSQIPGVGLVSVAGGQRPAVRVQVNPQALASAGLSLADLRTAVVGANVNQPKGNLDG FT PIRSTTINANDQLKSPTDYNDLIIAYRNDAPLRLSDVARAVQGAEDIRQAAWVGDKPAI FT LLNVQRQPGANVIDVVDRIHALLPQLRAAMPATLDLVVVADRTQTIRDSVADVQFEMLL FT AVGLVVLVTFLFLRSLTATVIPSVVVPLSLIGTFGIMYLAGFSINNLTLMALTIATGFV FT VDDAIVMIENIARHLEEGETPLQAALKGAAQIGFTLISLTFSLIAVLIPLLFMTEVVGR FT LFREFAVTLAVAILISLVVSLTLTPMMCARLLRPESEQRHGRFHQATGALIDRVIAGYD FT RMLQVVLRHQPLTLLVALGTFALTVLLYIVVPKGFFPQQDSGLIQAITQAPQTISFAAM FT SQRQQEAARIIVQDPDVAAVSSFIGVDGSNPTLNNGRMQIALKPQSERSGDLKTVMARL FT QDALHGGTDLGLTVYMQPVQDLTIEDRVSRTQYQMTLSNPDLAVLSEWAPRLVERLRQV FT PQLADVTYDLQDQGLQTWVEIDRDAASRLGITAAVIDEALYDAFGQRLISTVFTQSNQY FT RVVLEVLPQFRQSPQSLDHIHVPTASGAQVPLSSVARISEGRTVLAVNRLDQFPMTTVS FT FNLAPGASLSGAVEAISAVQAEIGLPLAIDTRFQGAALAFQNSLDSTLWLILAAVVTMY FT IVLGILYESYIHPITILSTLPSAGVGALLALLISGTDLDMIGIIGIILLIGIVKKNAIM FT MIDFALEAERKRGLAPREAIHEAALLRFRPILMTTLAALFGALPLMLSTGTGAELRQPL FT GLVMVGGLLVSQVLTLFTTPVIYLMFDRLARRRGGAGAAARQAP" FT misc_feature complement(113063..116104) FT /note="HMMPfam hit to PF00873, AcrB/AcrD/AcrF family, score FT 0" FT misc_feature complement(join(113069..113134,113180..113245, FT 113339..113404,113465..113530,114467..114532, FT 114656..114721,114758..114823,114965..115030, FT 115052..115117,116024..116089)) FT /note="10 probable transmembrane helices predicted for FT BPP3958 by TMHMM2.0 at aa 7-29, 331-353, 360-382, 429-451, FT 463-485, 526-548, 860-882, 902-924, 955-977 and 992-1014" FT misc_feature complement(116003..116110) FT /note="Signal peptide predicted for BPP3958 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.964) with cleavage site FT probability 0.699 between residues 36 and 37" FT CDS complement(116107..117357) FT /transl_table=11 FT /locus_tag="BPP3959" FT /product="HlyD family secretion protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3815" FT /db_xref="GOA:Q7W3S0" FT /db_xref="InterPro:IPR006143" FT /db_xref="UniProtKB/TrEMBL:Q7W3S0" FT /protein_id="CAE39242.1" FT /translation="MPESRSVAPPARQGRRRLIAAAIAVLAVLALAWWLWPKDTGGQQG FT RPGGRGAMRGGPASMMNMAVPVRVGEARTQDIQIVLRALGTVTAYNTVTVRSRVDGELV FT KVAFQEGQHVKAGDLLAQVDPRPFEVALAQAQGQQQQNLAQLENARRDLQRYQTLYKQD FT SIARQQLDTQAALVRQYEGTIKSDRAAVDSARLQLDFSRITAPIAGRLGLRQVDQGNLI FT SSGDANGLVVITQTQPIAVVFTLPETQLPEVLAQLRAGRQLPVEAYDRADTRRIASGQL FT ETVDNQIDVATGTVKLKARFDNAEEALFPNQFVNVRLYVETRSGMTAIPNAAVQQGSAG FT AFVFLAQPDDTVSVRQVKLGAINGDWVAVNEGLQPGDKVVVEGMDRLRAGARIEIVTGT FT TPEAAAPVNTGAPRRTP" FT misc_feature complement(116215..117087) FT /note="HMMPfam hit to PF00529, HlyD family secretion FT protein, score 5.3e-21" FT misc_feature complement(117250..117306) FT /note="1 probable transmembrane helix predicted for BPP3959 FT by TMHMM2.0 at aa 17-36" FT misc_feature complement(117262..117357) FT /note="Signal peptide predicted for BPP3959 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.804) with cleavage site FT probability 0.706 between residues 32 and 33" FT CDS complement(117538..118299) FT /transl_table=11 FT /locus_tag="BPP3960" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3816" FT /db_xref="InterPro:IPR009777" FT /db_xref="UniProtKB/Swiss-Prot:P67692" FT /protein_id="CAE39243.1" FT /translation="MASVILYEYPFNERIRAYLRLEYLFDRLFFFAREGDARLHQIAVS FT SLFDLLDASERTDIKGAVLQDLERQRMALVGLRDHPGVAQDALEAMLRDMERVVAALAA FT QGKTGQALRENEWLVSLRGRLAVPGGATQVDMPSYHAWQNKPESVRCADLQSWLAPLLP FT LHEGLSMALRLLRESGRRADIAAEQGGYQQMLAGKIYHLLRVWVDPSLGVFPEISANKY FT MVWIRFSTQDGEVKPQQVSRDVAFQMSLCSS" FT misc_feature complement(117976..117999) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(118332..118988) FT /transl_table=11 FT /gene="coaE" FT /locus_tag="BPP3961" FT /product="putative dephospho-CoA kinase" FT /EC_number="2.7.1.24" FT /note="ortholog of Bordetella pertussis (BX470248) BP3817" FT /db_xref="GOA:Q7W3R8" FT /db_xref="InterPro:IPR001977" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3R8" FT /protein_id="CAE39244.1" FT /translation="MRMGMYKIGLTGGIGSGKSRVADMLAEWGASVIDADEISHALTAP FT GGAAMPAIAREFGPQAVAADGALDRAWMRDLVFREPAARGRLEALLHPLIGLHTEQAAA FT QARGLYLVFVVPLLVESGRWRGRVDRICVVDCDPATQIARVQKRSGLTEPAIRRIMAAQ FT AARATRLEAADDVIVNDGATSPDTLRARARTLHDRWLALAGAASQPGGKAAGTPE" FT misc_feature complement(118434..118973) FT /note="HMMPfam hit to PF01121, Dephospho-CoA kinase, score FT 8.9e-68" FT misc_feature complement(118932..118955) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(118985..119977) FT /transl_table=11 FT /locus_tag="BPP3962" FT /product="type 4 prepilin-like proteins leader peptide FT processing enzyme" FT /note="ortholog of Bordetella pertussis (BX470248) BP3818" FT /db_xref="GOA:Q7W3R7" FT /db_xref="InterPro:IPR010627" FT /db_xref="UniProtKB/TrEMBL:Q7W3R7" FT /protein_id="CAE39245.1" FT /translation="MQIGARRNNAACGIALPPGPGGPSGPVRAGCPALPLLVLPFRVPP FT GAMWHVFPLDPALNVVLAALLGLVAGSWLSVVAHRLPRMMEREWRTAMREDDGGAESDY FT GLWRPAWHCPSCQAALRGWRAVPLAGWLLQRGRCGHCRQPIGLRYPMLELAAAVLFAAC FT AWRFGPTPMALAAMGLTGALLALAWIDLEHSLLPDAVTLPLIWAGLLVNLDGALAPLPL FT AVLGAVAGYLFLWVIFHFFRLLTGRDGMGHGDFKLMAALGAWLGLGALPWLLLGASLAG FT VLVGVLVGWSLRLAGRVGRGQPLPFGPYLALGGILMLLAAGRPAWLQFY" FT misc_feature complement(118991..119842) FT /note="HMMPfam hit to PF01478, Type IV leader peptidase FT family, score 6.4e-94" FT misc_feature complement(join(118997..119062,119108..119200, FT 119264..119329,119411..119476,119744..119809)) FT /note="5 probable transmembrane helices predicted for FT BPP3962 by TMHMM2.0 at aa 56-78, 167-189, 216-238, 259-290 FT and 305-327" FT CDS 120077..120820 FT /transl_table=11 FT /locus_tag="BPP3963" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3819" FT /db_xref="UniProtKB/TrEMBL:Q7W3R6" FT /protein_id="CAE39246.1" FT /translation="MSAPLDTPALRLNTRFATGIVLAGTLALAGCAQQRSAGYYDPPGA FT STITDAQYQGQAAGYRTVVHAPSQLQIELKPNQPARQQNAQAQAGQQSTEDGTAVPEGQ FT AAPQPQPETASPGAQAIIPQAQTYQGTFPCFAAGLACEAQRVTLTLAPNGRWRSRTNYL FT NKQPQASAPVAEQGCWDATQERPPRVLLLDGSGNMRAELVMTANNVLRVRSVGGRTPNL FT NYNLTRQPDLDAIAELDKQAAPKCP" FT misc_feature 120137..120169 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(120903..121250) FT /transl_table=11 FT /locus_tag="BPP3964" FT /product="putative regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3820" FT /db_xref="GOA:Q7W3R5" FT /db_xref="HSSP:1FSE" FT /db_xref="InterPro:IPR000792" FT /db_xref="UniProtKB/TrEMBL:Q7W3R5" FT /protein_id="CAE39247.1" FT /translation="MLPTPGNASSAQPALPVVSICHPIAPSVGGRAEARPPAALTARER FT QVAAYLAAGKANKVIAIDLGISRRTAEAHRARIFRKLGVRNAFELACRMCPHRRAATSM FT AGQGATPAGES" FT misc_feature complement(120945..121142) FT /note="HMMPfam hit to PF00196, Bacterial regulatory FT proteins, luxR family, score 3.4e-18" FT CDS complement(121348..122190) FT /transl_table=11 FT /gene="panC" FT /locus_tag="BPP3965" FT /product="pantoate--beta-alanine ligase" FT /EC_number="6.3.2.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP3821" FT /db_xref="GOA:Q7W3R4" FT /db_xref="HSSP:1IHO" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3R4" FT /protein_id="CAE39248.1" FT /translation="MKVVHTIQDLRDHLRGQNRVAFVPTMGNLHEGHLALMKLARQHGD FT PVVTSIFVNRLQFGPNEDFDRYPRTLPDDVAKMERDRDVYLVFAPDEREMYPEPQNYRV FT LPPDDLGDILEGEFRPGFFTGVCTVVMKLLACVQPRVAVFGKKDYQQLMVVRNMCRQLQ FT LPVEILAHETVRADDGLALSSRNRYLSEAERAEAPVLYETLRGIAQRRAGGEQDPAALE FT RVAAQALADRGWKVDYVAVRRQRDLKAPDVAEMSAGEPLVALAAAKLGATRLIDNLEF" FT misc_feature complement(121354..122190) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02569, Pantoate-beta-alanine FT ligase, score 5.5e-100" FT CDS complement(122235..123122) FT /transl_table=11 FT /locus_tag="BPP3966" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3822" FT /db_xref="GOA:Q7W3R3" FT /db_xref="InterPro:IPR003768" FT /db_xref="UniProtKB/TrEMBL:Q7W3R3" FT /protein_id="CAE39249.1" FT /translation="MAHNASISGDDLAALVEPQVDSTPDVVDSVAFARLYGEPLFQLPT FT DLYIPPDALEVFLEAFEGPLDLLLYLIRKQNFNVLDIPMADVTRQYLSYVEQIRVHNLE FT LAAEYLLMAAMLIEIKSRMLLPVKKSDTGEEPEDPRAELVRRLLEYEQMKLAAQKLDAL FT PQLGRDFVRSQAVAEISVERMLPEVSVDDLRAAWADIMKRARLNQHHHITREQLSVRDH FT MTHILRRLNDVRFMEFGELFLERINEGAPVAVVVVHFIAMLELARESLLDITQAESYAP FT IYVRLAYASVAAAA" FT misc_feature complement(122262..122912) FT /note="HMMPfam hit to PF02616, Uncharacterized ACR, FT COG1354, score 1.7e-26" FT CDS complement(123149..123337) FT /transl_table=11 FT /locus_tag="BPP3967" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3823" FT /db_xref="UniProtKB/TrEMBL:Q7W3R2" FT /protein_id="CAE39250.1" FT /translation="MAKNYESEITRFLKEYKTAHPDTEQRQREGRARLWDKAQNTELLE FT GFRAARVPQKPYVYQAD" FT CDS join(123435..124346,124348..124893) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP3968" FT /product="putative membrane protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP3824" FT /db_xref="PSEUDO:CAE39251.1" FT misc_feature join(123507..123575,123618..123686,123705..123773, FT 123783..123851,123888..123956,123966..124034, FT 124071..124130,124143..124211,124269..124337, FT 124365..124433,124467..124535,124551..124619, FT 124680..124748,124758..124826) FT /note="14 probable transmembrane helices predicted for FT BPP3968 by TMHMM2.0 at aa 25-47, 62-84, 91-113, 117-139, FT 152-174, 178-200, 213-232, 237-259, 279-301, 311-333, FT 345-367, 373-395, 416-438 and 442-464" FT misc_feature join(123510..124346,124348..124851) FT /note="HMMPfam hit to PF00083, Sugar (and other) FT transporter, score 0.015" FT CDS 124880..126406 FT /transl_table=11 FT /gene="glpK" FT /locus_tag="BPP3969" FT /product="glycerol kinase" FT /EC_number="2.7.1.30" FT /note="ortholog of Bordetella pertussis (BX470248) BP3825" FT /db_xref="GOA:Q7W3R1" FT /db_xref="InterPro:IPR005999" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3R1" FT /protein_id="CAE39252.1" FT /translation="MTANEFILALDQGTTSSRAIVFDRAGTVRGMGQREFRQHYPRPGW FT VEHDAGEIWQSQLEVAREALRNAGASAADLAALGITNQRETTLIWERATGRPLARAIVW FT QDRRTAAMCEKLLHDGHGRMLQERTGLVVDAYFSGTKLAWLLDHVPGARKMAERGELAF FT GTVDTWLVWQLTGGAVHSTDPSNASRTMLFDLHAQDWSDDILALLNIPRGILPRIAPSS FT ARIGETLPEWLGGSIPIAGVAGDQQAATFGQACFTPGMAKNTYGTGCFMLMNVGDAPVA FT SRHNLLSTVGWSLPAGNATHATYMVEGGVFMAGAAVQWLRDGLGIIQRSADIEALAASV FT ADTDDVFMVPAFAGLGAPHWDPYARGTLVGMTRGTTRAHIARATLESIALQSAELLSCM FT NADSGIPLSELRVDGGAARNDLLMQMQADLLGVPVVRPRVPESTALGAAGLAGLAVGFW FT SSLDEFGAQWQAERTFEPAWPADVREARMQRWRQAVELSKGWSRPAAGHA" FT misc_feature 124895..125635 FT /note="HMMPfam hit to PF00370, FGGY family of carbohydrate FT kinases, N-terminal domain, score 6.2e-102" FT misc_feature 125285..125323 FT /note="PS00933 FGGY family of carbohydrate kinases FT signature 1." FT misc_feature 125642..126331 FT /note="HMMPfam hit to PF02782, FGGY family of carbohydrate FT kinases, C-terminal domain, score 9.4e-79" FT misc_feature 125975..126037 FT /note="PS00445 FGGY family of carbohydrate kinases FT signature 2." FT CDS complement(126425..126892) FT /transl_table=11 FT /locus_tag="BPP3970" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3826" FT /db_xref="InterPro:IPR005265" FT /db_xref="UniProtKB/TrEMBL:Q7W3R0" FT /protein_id="CAE39253.1" FT /translation="MPEGRPGARGPRPSYPMLYSWIKIVHVAAMAAWTLGLLVLSSVTA FT FPARQGQGPGRLAQRLARCNRWLISPAMLLGVGCGLYLASMAGWFGQPWLDVKLALVGL FT LVVLHGAQSLVLRRQLASPAAGAPAWLAAGGAAVFFASAAIVLLAVVKPSL" FT misc_feature complement(join(126440..126505,126545..126595, FT 126626..126691,126755..126820)) FT /note="4 probable transmembrane helices predicted for FT BPP3970 by TMHMM2.0 at aa 24-46, 67-89, 99-116 and 129-151" FT CDS complement(126892..127914) FT /transl_table=11 FT /locus_tag="BPP3971" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3827" FT /db_xref="GOA:Q7W3Q9" FT /db_xref="InterPro:IPR017909" FT /db_xref="UniProtKB/TrEMBL:Q7W3Q9" FT /protein_id="CAE39254.1" FT /translation="MSRSHSFVSATRRALLGGALAVAAGLSWTAPAVAQGDAFPAKPLR FT FVVPYPPGGPLDSMARLLAEKVRESLGQPIIVENRSGAGGNIGADLVAKAAPDGYTLVM FT GAVATHAINPWLFANLPYDPVKDFAPVTIVASVPNVLVMNLEFAEKNNIQNLGDLLAYA FT KKNPGRLNYGSGGNGSAGHLSGELLKARAGIAAEHIPYQGAAPAQLALLSGQSDFMFDN FT LAAAAPLIKDGKVKALAVTTAKRSSLLADVPTVEEAGVKGFDLGTWFGVFTTGGTPADV FT VAKLNKAYADAMRLPDVRQRLLTMGSEAEPMTADAFAAFVKQEMAKYQEIVKISGASLN FT " FT misc_feature complement(126904..127740) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.9e-117" FT misc_feature complement(127810..127875) FT /note="1 probable transmembrane helix predicted for BPP3971 FT by TMHMM2.0 at aa 13-35" FT misc_feature complement(127813..127914) FT /note="Signal peptide predicted for BPP3971 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.883 between residues 34 and 35" FT CDS complement(128035..128775) FT /transl_table=11 FT /locus_tag="BPP3972" FT /product="putative amino acid ABC transporter ATP-binding FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3828" FT /db_xref="GOA:Q7W3Q8" FT /db_xref="HSSP:1B0U" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W3Q8" FT /protein_id="CAE39255.1" FT /translation="MTDAIIRMQDVNKWYGQFHVLRNINLDVAPGERIVVCGPSGSGKS FT TMIRCINRLEEHQQGHIIVDGTELTNDLKHIEAIRRDVGMVFQHFNLFPHLTVLENLTL FT GPTWVLKKSRAEAEATAMKYLERVRIPEQATKYPGQLSGGQQQRVAIARSLCMNPKIML FT FDEPTSALDPEMVKEVLDVMVRLAQESGMTMLCVTHEMGFARKVANRVIFMDRGEIIEQ FT NTPDEFFDNPQNERTKLFLSQILH" FT misc_feature complement(128125..128685) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 6.1e-67" FT misc_feature complement(128311..128355) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(128641..128664) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(128830..129930) FT /transl_table=11 FT /locus_tag="BPP3973" FT /product="putative amino acid ABC transporter permease FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3829" FT /db_xref="GOA:Q7W3Q7" FT /db_xref="InterPro:IPR010065" FT /db_xref="UniProtKB/TrEMBL:Q7W3Q7" FT /protein_id="CAE39256.1" FT /translation="MSSATHTPGEALPPPSGHVGVWHWLRTRLFSSPLSILATVLLAWL FT VLMAVPALVEWALIGANFTATSAQECRQSEGACWAFIVEKHRLILFGTYPYDEQWRPLL FT ATIILIAVIVCSGMRRFWKPSLALVWIVGLSAVAVLMWGGVLGLTYVENARWGGLPLTL FT ILATFGIALAFPFGVLLALGRRSRMPAIKALCVVYIELIRGVPLISLLFMSSVMLPLFL FT PEGFSIDKLLRAQIAIIMFAAAYIAETVRGGLQAIPKGQYEGADSLGLTYWQQMRKVIL FT PQALKIVIPPLVSIFIALFKDTSLVVIIGIFDLTLAAKAALSDAAWRGFGVEAYVFIAL FT IYFVFCFSMSKYSQALEHRLATGHQR" FT misc_feature complement(join(128890..128955,129001..129066, FT 129169..129234,129280..129345,129382..129447, FT 129478..129543,129565..129630,129757..129822)) FT /note="8 probable transmembrane helices predicted for FT BPP3973 by TMHMM2.0 at aa 36-58, 100-122, 129-151, 161-183, FT 195-217, 232-254, 288-310 and 325-347" FT misc_feature complement(128962..129174) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 4.2e-17" FT misc_feature complement(129085..129171) FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS complement(129932..131122) FT /transl_table=11 FT /locus_tag="BPP3974" FT /product="putative amino acid ABC transporter permease FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3830" FT /db_xref="GOA:Q7W3Q6" FT /db_xref="InterPro:IPR010065" FT /db_xref="UniProtKB/TrEMBL:Q7W3Q6" FT /protein_id="CAE39257.1" FT /translation="MTTTNRNAPIPAPRRRLNWNDPGLRAVVYQFVALVVVALVAWFLV FT SNTLHNLSVRNIATGFGFLDREAGFAIGETPIAYSPSDTYGRAILVGVLNTLRVAVIGI FT VLATLLGTLIGIGRLSKNWLVTRLTSIYVEVMRNVPLLLQLFFWYALITENMPGPRQAH FT NPLPGVFISNRGVRVPSLEGNALDWMLGGLALAIVAIIVLGHWGRKRQEATGRIFPLGR FT AAIALLIGLPIVGWLASGASLALDMPALKGFNFQGGLNMSPEFAALLAGLAIYTSAFVA FT EVVRSGIQAVNQGQWEAAGSLGLRRAQVLRLVVLPQALRVIIPPMTSQYLNLTKNSSLA FT VAIGYPDIVSVVNTTLNQTGQAIEGILIIMGAYLTVSLTISIFMNWYNKRIALVER" FT misc_feature complement(join(129962..130027,130271..130327, FT 130388..130453,130502..130567,130667..130732, FT 130772..130837,130988..131053)) FT /note="7 probable transmembrane helices predicted for FT BPP3974 by TMHMM2.0 at aa 23-45, 95-117, 130-152, 185-207, FT 223-245, 265-284 and 365-387" FT misc_feature complement(130052..130264) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 1.2e-14" FT misc_feature complement(130175..130261) FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS complement(131242..132258) FT /transl_table=11 FT /locus_tag="BPP3975" FT /product="putative ABC transporter periplasmic amino FT acid-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3831" FT /db_xref="GOA:Q7W3Q5" FT /db_xref="InterPro:IPR001638" FT /db_xref="UniProtKB/TrEMBL:Q7W3Q5" FT /protein_id="CAE39258.1" FT /translation="MKMLKLAAAGAALFAAGSVAHAGATFDNVKKKGFVQCGVSTGIPG FT FSIADSKGEWKGLDVDMCRAIAATMFGDASKFKVTPLNTQQRFTALQSGEVDVLTRNTT FT VTLTRDTTLGLIGVGVNYYDSQGVMVSKELGVKSAKELNGATVCVQPGTTTELNLADWF FT RGNKIEFKPVVIDKYDEIVRAFSAGRCDAFTTDKSQLASTRTTLEKPDNYVILPEDFSK FT EPLGPMVRQGDEQWFNVVRWSLNAMLEAEEYGITSKNVDEMAKSSNPNIQRILGVTPGM FT GKNLGVDDKWAFNIIKQVGNYGESFEATLGKSSAMKLERGLNASYKQGGLMYGWPVR" FT misc_feature complement(131470..132156) FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3, score 5.2e-38" FT misc_feature complement(132049..132090) FT /note="PS01039 Bacterial extracellular solute-binding FT proteins, family 3 signature." FT misc_feature complement(132193..132258) FT /note="Signal peptide predicted for BPP3975 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.971 between residues 22 and 23" FT CDS 132577..133248 FT /transl_table=11 FT /gene="ftsE" FT /locus_tag="BPP3976" FT /product="cell division ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3832" FT /db_xref="GOA:Q7W3Q4" FT /db_xref="HSSP:1F3O" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W3Q4" FT /protein_id="CAE39259.1" FT /translation="MIEFQHVFKSYGRGRNILADINFRISAGEFVFVSGPSGAGKSTLL FT KLIGGLEPPSRGSIQVNNQRLDRLPSRARPYLRRAVGVILQDTHLLYDRSAFQNVMLPL FT AVTGQAPDSAAARARAALDKVGLAGKEDLNPIELSGGEQQRLAIARAIVNRPAILIADE FT PTANLDHDNAQRIMNVFRDFNRVGVTTLIASHDQDLMARYATRTLSIEHGRFHDTHGGQ FT A" FT misc_feature 132658..133215 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.1e-61" FT misc_feature 132679..132702 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 132988..133032 FT /note="PS00211 ABC transporters family signature." FT CDS 133245..134153 FT /transl_table=11 FT /locus_tag="BPP3977" FT /product="putative permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3833" FT /db_xref="GOA:Q7W3Q3" FT /db_xref="InterPro:IPR003838" FT /db_xref="UniProtKB/TrEMBL:Q7W3Q3" FT /protein_id="CAE39260.1" FT /translation="MKAWLRQHRYALAITLRRLAAQPFSSLANLLVMALALALPLLGSA FT ILVSVQPLARQVSVTPELTVFMQTQAPATAAGAVAERIGRDYASQIAAVRVVPRDQALA FT ALRDNPAWEQALAVLPGNPLPDAVVVTLADGENLAGRAGALAQDWGKWDGVDQVQLDSA FT WVQRLEALLRFARIGLAFLAACVAVVVLATVFNTVRMQAMTQREEIAVARLVGATESFV FT RRPFLYQGALTGAVSALIAIGAAAMALTPLNDALLGLARSYGAEFALHLPGLPVLAVAV FT IAAGVLGALSARWSVTRSTRF" FT misc_feature 133245..133406 FT /note="Signal peptide predicted for BPP3977 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.978) with cleavage site FT probability 0.202 between residues 54 and 55" FT misc_feature join(133320..133388,133764..133832,133920..133988, FT 134046..134114) FT /note="4 probable transmembrane helices predicted for FT BPP3977 by TMHMM2.0 at aa 26-48, 174-196, 226-248 and FT 268-290" FT misc_feature 133446..134144 FT /note="HMMPfam hit to PF02687, Predicted permease, score FT 4.9e-05" FT CDS 134365..135003 FT /transl_table=11 FT /locus_tag="BPP3978" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3834" FT /db_xref="GOA:Q7W3Q2" FT /db_xref="InterPro:IPR005659" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3Q2" FT /protein_id="CAE39261.1" FT /translation="MPARLDARATRRYFDSAFNSPAVKILPNEYYVTNGEDVMLSTVLG FT SCVAACIHDPVIGVGGMNHFMLPEGDIHSPASATMRYGAFAMEVLINELLKAGAVRERL FT EAKVFGGGAVLSAMQLMNIGERNGQFVLNYLKTEGIPVRAQDLGDVHARRINYFPRDGR FT VMVRKMAPHHQKAEALIAQREAAAAQTVQAETRAAPRVERFARPGGMPV" FT CDS complement(135136..138810) FT /transl_table=11 FT /locus_tag="BPP3979" FT /product="putative pyruvate ferredoxin/flavodoxin FT oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3835" FT /db_xref="GOA:Q7W3Q1" FT /db_xref="InterPro:IPR019752" FT /db_xref="UniProtKB/TrEMBL:Q7W3Q1" FT /protein_id="CAE39262.1" FT /translation="MPLPHKGLSAWLVRTPLTNGVDMNAPLTPAQRAALESVHLDDKYT FT LTAGRAWMSGIHALVRLPMMQRVRDERAGLNTAGFVSGYRGSPLGGVDQNMWKAAKYLK FT QHHIEFQPGINEDLAATAVWGSQQVNLFPGAKYDGVFGMWYGKGPGVDRCGDVFKHANA FT AGTSRHGGVLVVAGDDHPAKSSTLPHQSDHILKACMIPALFPASVQEVLDYGLHGWAMS FT RYAGVWVGMKCITDIVEVSASVEVDPERTRIVLPEDFQLPPDGLNIRLPDTPLQQEARL FT LDYKLYAALAYARANRLNREMWQVPNAQARFGIMTSGKAYLDTRQALADLGLSEEICKR FT IGLRLFKVGMVWPLEATGMQRFAEDLDEILVVEEKRQVLEYQLKEELFSWIGTGKKIPR FT VVGKFDDKDGGEWSVPQGNWLLPAHYEFSPAMVAKAIGARLLRFELPEDVRAGIQARLD FT FIAEREQALARPRLVVDRKPWFCSGCPHNTSTRVPEGSRGMAGIGCHYMVTWMGRNTQV FT FTQMGGEGVPWVGQAPFTEEKHVFANLGDGTYYHSGLLAIRAAVAAKVPITYKILFNDA FT VAMTGGQPVDGPISVPMITRQMAAEGIEKIVVVTDEPEKYRHVTDLAPGVPVKHRDELD FT AVMKELRAYPDVSVLVYDQTCATEKRRRRKRNAYPDPALRVVINERVCEGCGDCSEKSH FT CLSVEPLETEFGRKRTINQSSCNKDYSCLKGFCPSFVTVEGGRLRKPRALAQQDAIDQG FT LPAPRADALAGHYGVFIAGVGGTGVVTIGQLLGMAAHLEGKGCSVLDMAGLAQKGGAVY FT SHVVLAPTPGELLNTRVAMGEADLVLAGDLVVGTSPEAIARMRPGRTHTLLNSDVAPTA FT AFVHDPDWTLPGSNLQADLAKACGADNVATIDAAELAVGLLGDAIYANPLMMGYAYQKG FT WLPLGEAAMQRAIELNGQQVENNLAAFAWGRRAAHDLAQVQALIGKGQPAAGDEGIVEV FT KRGQGAVVDFKRPAGELGALARIRRAFLAQYQNEAYARRYQDLVDQVAAAEQAATGTTR FT LAEAVARYYFKLMAYKDEYEVARLYSDGEFLKRIDAQFEGDWKLNFHLAPPLFSKRDSE FT GHLVKRRYGPATLRLFGALARLRFLRGTAFDVFGYTAERRAERALIEQYREQLGAILPK FT LNRGNLEHAVALASLPEEIRGYGHIKEAAMARADVRRAELMREFSASVVPIGGGVRAA" FT misc_feature complement(135925..136491) FT /note="HMMPfam hit to PF01558, Pyruvate FT ferredoxin/flavodoxin oxidoreductase, score 8.6e-06" FT CDS 138893..139969 FT /transl_table=11 FT /gene="mutY" FT /gene_synonym="micA" FT /locus_tag="BPP3980" FT /product="putative A/G-specific adenine glycosylase" FT /EC_number="3.2.2.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3836" FT /db_xref="GOA:Q7W3Q0" FT /db_xref="HSSP:1KG2" FT /db_xref="InterPro:IPR000086" FT /db_xref="UniProtKB/TrEMBL:Q7W3Q0" FT /protein_id="CAE39263.1" FT /translation="MAPMDFASRITAWQARHGRHDLPWQNTRDPYRIWLSEIMLQQTQV FT ATVIPYYQRFLERFPDVAALAAARQEDVMPYWAGLGYYARARNLHRCAQEIMQRCGGRL FT PPRAEEIATLPGIGRSTAAAIAAFAYGERSPIMDGNVKRVFTRHFGIEGDPARRAVEQQ FT LWALAAAQVQAAPDLDMPGYTQGLMDLGATLCTRGKPACERCPVAQSCIARRDGRQAEL FT PTPKARKAIPERSTAMLVLHGPDGILLHLRPAPGIWGGLWSLPECDPAHDPGAAARELG FT LQAEAPVELAAFAHTFTHYRLHVRPWYLAVRGAALRQAATPERWVSPAELPATALPAPV FT RKLLDGLLAALPAPPRQA" FT misc_feature 138983..139468 FT /note="HMMPfam hit to PF00730, HhH-GPD superfamily base FT excision DNA repair protein, score 7.9e-47" FT misc_feature 139475..139525 FT /note="PS00764 Endonuclease III iron-sulfur binding region FT signature." FT misc_feature 139586..139942 FT /note="HMMPfam hit to PF00293, NUDIX domain, score 0.022" FT CDS complement(139980..140789) FT /transl_table=11 FT /locus_tag="BPP3981" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3837" FT /db_xref="GOA:Q7W3P9" FT /db_xref="InterPro:IPR000014" FT /db_xref="UniProtKB/TrEMBL:Q7W3P9" FT /protein_id="CAE39264.1" FT /translation="MNSATHLAAHEGSARRRQALGEFVRTARARITPQMAGLPAGSRRR FT TPGLRREEVAQLSDISVTWYTWIEQGREVTVSPAVWARIANVLHLARAERAYLFELAEC FT ADPQQPRDEGGDAPVSLQACVDAIDAPAYALDRAWNLLASNAAMRELFDDWPLRDAQPN FT LLRYIFLDPAARELVVDWDQRARRVVAEFRADAGAHLDEADVVALLDELNRASPVFAHW FT WTRHAVVEREGGLREFQHPRSGRQNLQQITFRLATHPELKLVMLLPS" FT CDS join(140879..141469,141468..141650) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP3982" FT /product="ubiE/COQ5 methyltransferase family protein FT (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP3838" FT /db_xref="PSEUDO:CAE39265.1" FT misc_feature 140885..141505 FT /note="HMMPfam hit to PF01209, ubiE/COQ5 methyltransferase FT family, score 5.7e-06" FT CDS complement(141771..145544) FT /transl_table=11 FT /gene="metH" FT /locus_tag="BPP3983" FT /product="5-methyltetrahydrofolate--homocysteine FT methyltransferase" FT /EC_number="2.1.1.13" FT /note="ortholog of Bordetella pertussis (BX470248) BP3594" FT /db_xref="GOA:Q7W3P8" FT /db_xref="HSSP:1BMT" FT /db_xref="InterPro:IPR003759" FT /db_xref="UniProtKB/TrEMBL:Q7W3P8" FT /protein_id="CAE39266.1" FT /translation="MPYPRIPFPLSAYTHGGEFVRQLDKRILILDGAMGTMIQRYKLGE FT ADFRGERFAEHHKDLKGDNELLSLVRPDVISEIHRQYLEAGADVIETNTFGATSIAQGD FT YDLPELAYEMNLESARLARAACDAYSTPEHPRFVAGALGPQPKTASISPDVNDPGARNV FT TFDELRAAYVEQLNGLLDGGIDIVLIETIFDTLNAKAAIFAVEETFEARGVRLPVMISG FT TVTDASGRILSGQTVEAFWNSVRHARPVTIGLNCALGAALMRPYVAELSKICDTYVCVY FT PNAGLPNPMAETGFDETPADTSALLEEFAQAGLVNMAGGCCGTTPEHIRAIAGKVASLT FT PRAVPEVPVKTRLSGLEALNIDDETLFVNVGERTNVTGSKMFARLVREEKYDEALAVAR FT QQVENGAQIIDVNMDEAMLDSVACMHRFLNLIASEPDIARVPVMIDSSKWEVIETGLKC FT VQGKAVVNSISMKEGEEPFRHHARLCRRYGAAMVVMAFDEQGQADSLERRKEICGRAYR FT ILVEEEGFPPEDIIFDPNVFAVATGIDEHNHYAVDFIEGARWIRANLPHARISGGISNV FT SFSFRGNEPMREAIHTVFLYYAIEAGLTMGIVNAGQLGVYADLAPHLRDLVEDVILDRP FT EPVGRSDSADERSPTERLVQFAETVKGSGAKKEEDLTWRTGSVEQRLAHALVHGITTFI FT VEDTEEVRQQVAARGGRTIEVIEGPLMDGMNVVGDLFGAGKMFLPQVVKSARVMKQAVA FT HLIPFIEEEKRQIAAAGGDVRAKGKIVIATVKGDVHDIGKNIVSVVLQCNNFEVVNMGV FT MVPCAQILQKAKDENADMIGLSGLITPSLEEMAYVASEMQRDPYFRERAMPLMIGGATT FT SRVHTAVKIAPNYDGSVIYVPDASRSVGVATSLMSDQAPAYLAELAQEYEDVRRRHANR FT KAVPLVSLAEARAARPQIDWSGYQPPRPKFLGRRAFKSYDLAEIARYIDWGPFFQTWSL FT FGPFPAILDDKVVGEQARKVYEEGQAMLKRIIDGRWLTASGVVGFYPANRVNDEDIEVY FT ADETRSEVLFTYRNLRQQGVKREGVSNKCLADYIAPRDSGLLDYIGMFAVTAGLGIEKK FT EAEFQAALDDYSSIMLKSLADRLAEAFAECMHARVRRDLWGYAADEALSNDELIAEKYS FT GIRPAPGYPACPEHVVKTDLFRVLDAADVGMELTDSYAMFPASSVSGFYFSHPESQYFN FT VGNIGADQLADYVARSGRAEEDVRRTLAPNLG" FT misc_feature complement(141867..142733) FT /note="HMMPfam hit to PF02965, Vitamin B12 dependent FT methionine synthase, activation domain, score 4.7e-125" FT misc_feature complement(142848..143216) FT /note="HMMPfam hit to PF02310, B12 binding domain, score FT 1.6e-45" FT misc_feature complement(143250..143537) FT /note="HMMPfam hit to PF02607, B12 binding domain, score FT 1.9e-38" FT misc_feature complement(143700..144446) FT /note="HMMPfam hit to PF00809, Pterin binding enzyme, score FT 4.8e-84" FT misc_feature complement(144531..145466) FT /note="HMMPfam hit to PF02574, Homocysteine FT S-methyltransferase, score 5.9e-141" FT CDS 145881..147770 FT /transl_table=11 FT /locus_tag="BPP3984" FT /product="putative outer membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3595" FT /db_xref="GOA:Q7W3P7" FT /db_xref="HSSP:1UJW" FT /db_xref="InterPro:IPR012910" FT /db_xref="UniProtKB/TrEMBL:Q7W3P7" FT /protein_id="CAE39267.1" FT /translation="MKSRSLRRCAGVLACAAPLAGHAQAGAAAGQPIPELDPVVVTAAR FT SPQLLRNVLADASVIERDTLARAGQSSLAEVLAQQHGIEFADSGGPQSVTSLFMRGANS FT NQTLVLLNGQRINNANGGGIALNALPPQAIERIEIVRGAASSLYGADAIGGVINIITRE FT PGDKALSAYANAGYGTYGTSRYDAGVSGAADGFSYSLSTGYGQSHGFNATNRRSFSYNP FT DKDSYYQNYATGTLGYEWRPEQKVVAQVYRSRINGGYDASASYDYNDRYIQDLQAYSLA FT SENRLTRYWKSTLRAGYVEDKNDSRAEGMFEDNNTRFRTRQMQYLWQNDFTLAAGQTLT FT LAYEHLDQRADGQMSTPTGIGNYTETRRHVNSYTGVYLGDFGRHHVQASLRNDDNSQFG FT SHTTGGLAYGFDLTPNLRATVAANTGFRAPSFNDLYTPTSAFGYRGNPDLKPEESRNAE FT IGLKYQDEDSELGVVYYQTRIKNLIQVTEDCSTVENVGRARLQGFTISGAHRFGNTRLR FT ASLDLSNPRNEDTGKQLLRRARTVLRAGIDHRFDRLLVGAEWYASDERYDYGFPEEKRL FT GGYGLVNLTAAYDLSRNMQVQVRWNNVLGQRYTLADGYNTAGSNAFVNLSWRM" FT misc_feature 145881..145955 FT /note="Signal peptide predicted for BPP3984 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.489 between residues 25 and 26" FT CDS 147782..148606 FT /transl_table=11 FT /locus_tag="BPP3985" FT /product="periplasmic binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3596" FT /db_xref="GOA:Q7W3P6" FT /db_xref="InterPro:IPR002491" FT /db_xref="UniProtKB/TrEMBL:Q7W3P6" FT /protein_id="CAE39268.1" FT /translation="MSAARLAPRLIALTVAALAQPARRAIALAPHAAELVYAAGAGDRL FT VGAVRGTDYPPAARQLPSVGDAMQPDPERIAVLCPDLLIGWQPAAGAPLAPIAARLGAA FT LYYSDPRTLADIPAAIEQLGRLFGTEAQADAGAAALRARLAALAARYAGKAPVRVFVQA FT GTDPLFTLNDHSIVGDVLRLCGGVNVYGQAPILALQVTLEGVLAARPDAIVAGVDGTAD FT AAATLRAWQAAGVPAALRGHVYGIDADSLYRPTGRLIDAAEQLCARLDEARG" FT misc_feature 147782..147838 FT /note="Signal peptide predicted for BPP3985 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.978) with cleavage site FT probability 0.576 between residues 19 and 20" FT misc_feature 147842..148531 FT /note="HMMPfam hit to PF01497, Periplasmic binding protein, FT score 6e-18" FT CDS 148632..149507 FT /transl_table=11 FT /gene="thiG" FT /locus_tag="BPP3986" FT /product="thiazole biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3597" FT /db_xref="GOA:Q7W3P5" FT /db_xref="InterPro:IPR008867" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3P5" FT /protein_id="CAE39269.1" FT /translation="MLYHWPYRRKHSCARAPARRAYRSIAMTTEDTLTIAGRSYQSRLL FT VGTGKYQDFAQTRAALDASGTQIVTVAIRRTNIGQNPDEPSLLDFVPPSQFTLLPNTAG FT CYSADDAVRTLRLARELLDGHDLVKLEVLGDPQNLFPNMPETLKATRTLVDEGFKVMVY FT CTDDPIQCRMLEDLGSVAVMPLASLIGSGMGILNPWNLRLIIDQSSVPVLVDAGVGTAS FT DAAIAMELGCDGVLMNTAIAGARDPILMASAMRKAVEGGREAYLAGRVPRKLYSAAPSS FT PTEGLIAAVK" FT CDS 149504..150355 FT /transl_table=11 FT /gene="thiD" FT /locus_tag="BPP3987" FT /product="putative phosphomethylpyrimidine kinase" FT /EC_number="2.7.4.7" FT /note="ortholog of Bordetella pertussis (BX470248) BP3598" FT /db_xref="GOA:Q7W3P4" FT /db_xref="HSSP:1JXH" FT /db_xref="InterPro:IPR004399" FT /db_xref="UniProtKB/TrEMBL:Q7W3P4" FT /protein_id="CAE39270.1" FT /translation="MNHPASSATPRGERRIPNALSIAGVDPSGGAGVLADVKAMSALGA FT YGCAVIAAMTAQNTQGVTGISPVPAEFVGLQIDTLFADVPIDAVKLGMLGQEAVTLVVA FT EKLARWQPAHIVLDPVMVAKSGDLLLERGAVGALRETLLPLATLLTPNLPEAGVLLDER FT PVETLKEMRRVAERLRNRMTHAGQRWVMVKGGHLPGNETIDLLHDGDRMIELPGHRIET FT PNTHGTGCTLSAALAALLPQSPDVPEAARRAKAYLTEAIRQADRLQVGSGHGPVHHFHA FT WW" FT CDS 150417..151097 FT /transl_table=11 FT /locus_tag="BPP3988" FT /product="putative protein-L-isoaspartate FT O-methyltransferase" FT /EC_number="2.1.1.77" FT /note="ortholog of Bordetella pertussis (BX470248) BP3599" FT /db_xref="GOA:Q7W3P3" FT /db_xref="InterPro:IPR000682" FT /db_xref="UniProtKB/TrEMBL:Q7W3P3" FT /protein_id="CAE39271.1" FT /translation="MNTSTLPDVEQARFNMMEQQIRPWDVLDPKVLDALFAVRRELFVP FT PALRALAFSDLEIPLEINAVNTRQNMLAPKIEARLAQELLLQPTDCVLEIGTGSGYQAA FT LLAHLAQQVTTVEIDSRLATFAQQNLQVNNVADVKVETGDGRNGWGSTEYDAILVTGSV FT PVVPDALKYQLRVGGRLVVIVGQAPIMTAYRITRTTAASFETVSLFETVIKPLRGTTVS FT QFKF" FT misc_feature 150450..151079 FT /note="HMMPfam hit to PF01135, FT Protein-L-isoaspartate(D-aspartate) O-methyltransferase FT (PCMT), score 5.3e-14" FT CDS 151101..152420 FT /transl_table=11 FT /locus_tag="BPP3989" FT /product="putative outer membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3600" FT /db_xref="GOA:Q7W3P2" FT /db_xref="HSSP:1EK9" FT /db_xref="InterPro:IPR016160" FT /db_xref="UniProtKB/TrEMBL:Q7W3P2" FT /protein_id="CAE39272.1" FT /translation="MRIGRVAALLTLACAANASAQDLMQAWRAGLSNDPQFAAARAAYR FT AGQEKLPQARAGLLPALSGEAGGLYNESRTTHGLGVSHSGGRGTWNLVLTQPLFDWSRW FT QRFEQSKLVVADVEVQLQQAFQDLMLRVANAYFGILTAQDALAATEAEKAAVAEQLAAA FT KRTFELGNATITDTYEAQARYDLVVAEELRQQNDLQTQRDALSRIMGEAPGALAELPPG FT IPLPAPQPARLNNWSTQAEASGLDVLRAQLQTRIASHEIQIARSGHMPTLNLRASSGSA FT TDGVLQGTGPGRPIENTVGVTLSIPLYAGGGISSQVTEKVQLEQKARHDFEDARRQAVQ FT SARLYYNGVLTGLARVRALEAGEKSSRAAVQANQTGYELGVRINLDVLNAQQQLYATQR FT DLAQARYGALLDSLRLKAVSGILSEADLDAVNRLLRLPRN" FT misc_feature 151101..151160 FT /note="Signal peptide predicted for BPP3989 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.974 between residues 20 and 21" FT misc_feature 151167..151763 FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein, score 7.4e-34" FT misc_feature 151797..152393 FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein, score 2.9e-37" FT misc_feature 151818..151841 FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site." FT CDS complement(152441..152929) FT /transl_table=11 FT /locus_tag="BPP3990" FT /product="putative cytidylyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3602" FT /db_xref="GOA:Q7W3P1" FT /db_xref="HSSP:1COZ" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/TrEMBL:Q7W3P1" FT /protein_id="CAE39273.1" FT /translation="MSSARFESKILSRAELVAAVAAGRLPRPLVFTNGVFDILHRGHVT FT YLDQAAQLGATLVVAVNTDESVRRLGKGSDRPLNQVQDRAALLAALGCVDAVTSFHEDT FT PQELIGELRPDLIVKGGDYDMDTLPETALVKSWGGRAVAIPFDFERSTTALLGKIRQG" FT misc_feature complement(152456..152851) FT /note="HMMPfam hit to PF01467, Cytidylyltransferase, score FT 4.5e-29" FT CDS complement(153083..153961) FT /transl_table=11 FT /locus_tag="BPP3991" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0165" FT /db_xref="GOA:Q7W3P0" FT /db_xref="UniProtKB/TrEMBL:Q7W3P0" FT /protein_id="CAE39274.1" FT /translation="MLYPELFKTMEAVRWNMASDIPWDYFDGSKLSDEQAHTIKMNAIT FT EWAALPATEMFLRDNRGDSDFCAFMSVWFFEEQKHSLVLIEYLRRFRPELMPTEEELHK FT VRFEFDPAPELETLMLHFCGEIRLNHWYRCAADWHTEPVIKAIYRTVAKDEARHAGAYL FT QYMRRALHDRGDQTSLQARQSFAKIGVLMASASRTAQAMHPTNLHVNKALFPNDTVQSR FT LPEPGWLEHWLDTQIRFDGTWEGKVATRILHILSKLLDRQFDSVKDLNRYRKEQTGRVL FT APQEGLVLAGA" FT CDS complement(154136..155698) FT /transl_table=11 FT /gene="ubiB" FT /gene_synonym="aarF" FT /locus_tag="BPP3992" FT /product="probable ubiquinone biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0164" FT /db_xref="GOA:Q7W3N9" FT /db_xref="InterPro:IPR010232" FT /db_xref="UniProtKB/TrEMBL:Q7W3N9" FT /protein_id="CAE39275.1" FT /translation="MNAMLTFLRLLRILLVSLRYGLDELVLSSLNHPLATCLLRVMRLG FT TRPRAPRGVRLRMALESLGPIFVKFGQVLSTRRDLIPADIANELALLQDRVPPFPSAQA FT AASIEAALGAPPAQLFAQFDVDPVASASIAQVHFAVLHDGREVAVKVLRPGMLNVIEKD FT LALLRVVAGVIERLGADGRRLKPREVVAEFDKYLHDELDLVREASNCSQLRRNFGPESG FT RGEMLIVPEVVWEYTASTVFTMQRMYGIPVGQVDRLRAAGIDIPTLARSGVEIFFTQVF FT TDGFFHADMHPGNIYVSDAPQTLGRYIALDFGIVGSLSEFDKNYLAQNFLAFFHRDYRR FT VAQLHIESGWVPPETREEELEGAVRAVCEPYFDRPLAEISLGQVLLRLFQTSRRFNVEI FT QPQLVLLQKTLLNVEGLGRQLDPNLDLWKTAKPYLEHWMRQRIGLTGLRQSLAKEAGQW FT SQMLPSLPRLVHEHFSRPNLTPHLLAEMNRLRRAQEQGNRLTAALTAVLAVAVAVALWA FT LNR" FT misc_feature complement(154145..154201) FT /note="1 probable transmembrane helix predicted for BPP3992 FT by TMHMM2.0 at aa 499-518" FT misc_feature complement(155000..155371) FT /note="HMMPfam hit to PF03109, ABC1 family, score 1.5e-46" FT CDS complement(155695..156330) FT /transl_table=11 FT /locus_tag="BPP3993" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0163" FT /db_xref="UniProtKB/TrEMBL:Q7W3N8" FT /protein_id="CAE39276.1" FT /translation="MLPFAALPTLPRIAARALNALLERESWARDRLARHAGKTVRFALG FT GLALSLTIDSEGRVQEADSAVVPNVTLSAAESFSLARLLPGDGRADFADLTHISGDAAL FT AQVVADLARDLRWDAEDELARVVGDIPAARLLGGVRALAGGAREAGGRLARNVSEYLAE FT ESAVLVGRPQWEQWRLDLARFGADSDALARSAAALEARLARLDARRGA" FT CDS complement(156559..157581) FT /transl_table=11 FT /locus_tag="BPP3994" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0162" FT /db_xref="GOA:Q7W3N7" FT /db_xref="InterPro:IPR007379" FT /db_xref="UniProtKB/TrEMBL:Q7W3N7" FT /protein_id="CAE39277.1" FT /translation="MSRSRFSRFCAMALVAVAGTAMVGASFDAEARRMGGGSSFGRQST FT NITQQRQAVTPPAAGAGTTAGATSAARPATAAAGTAAAGTAAKSGMSRWLGPIAGIAAG FT LGLAALLSHLGLSGAFAEFMASMLLIALVVFAVIFIVRRLRGGAPRQAMQGAYGAAGGN FT RPGQPSQQPMWRESLNPAPAQQPAAAPVAAAAPAAAAAALPKAGDDGNWFIPGDFDTPR FT FLQQAKDQFVRIQGIWDSGEVESLRDFLTDDLISELKPQLEARGAAANKTEVVLLNAEL FT LGIETVSDGHLASVRFSGMLREAPGTEAFRFEEVWNLFKPADGGWLLAGIQQIPVEHAS FT " FT misc_feature complement(join(157156..157221,157234..157299, FT 157501..157566)) FT /note="3 probable transmembrane helices predicted for FT BPP3994 by TMHMM2.0 at aa 5-27, 94-116 and 120-142" FT misc_feature complement(157513..157581) FT /note="Signal peptide predicted for BPP3994 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.602 between residues 23 and 24" FT CDS complement(157747..158523) FT /transl_table=11 FT /gene="ubiE" FT /locus_tag="BPP3995" FT /product="ubiquinone/menaquinone biosynthesis FT methyltransferase" FT /EC_number="2.1.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0161" FT /db_xref="GOA:Q7W3N6" FT /db_xref="InterPro:IPR004033" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3N6" FT /protein_id="CAE39278.1" FT /translation="MQTPHSQPESAPQGEQSTHFGFQSVPEADKARKVAEVFHSVASRY FT DVMNDLMSAGLHRVWKAFTIGRAAVRPGMKVLDIAGGTGDLARAFAKRAGPSGEVWLTD FT INESMLRVGRDRLTDSGLLVPTAVCDAERLPFPSQYFDRVSVAFGLRNMTHKDRALAEM FT TRVLKPGGKLLVLEFSRVAKPLAPAYDWYSFNVLPWMGKKVANDEASYRYLAESIRMHP FT DQETLAGMLRDAGLDRVQYFNLTAGVAALHEGVRLG" FT misc_feature complement(157756..158457) FT /note="HMMPfam hit to PF01209, ubiE/COQ5 methyltransferase FT family, score 3.4e-110" FT misc_feature complement(157987..158031) FT /note="PS01184 ubiE/COQ5 methyltransferase family signature FT 2." FT misc_feature complement(158344..158391) FT /note="PS01183 ubiE/COQ5 methyltransferase family signature FT 1." FT CDS 158747..159388 FT /transl_table=11 FT /gene="phoB" FT /locus_tag="BPP3996" FT /product="phosphate regulon transcriptional regulatory FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0160" FT /db_xref="GOA:Q7W3N5" FT /db_xref="HSSP:1GXP" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W3N5" FT /protein_id="CAE39279.1" FT /translation="MNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWMLPGASGLSL FT ARKLRDEERTRAVPVIMLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRR FT APQLTDDIIDVAGLKLDPVTHRLSGHSQSLSIGPTEFRLLHFFMTHPERVFSRSQLLDQ FT VWGDHVFVEERTVDVHIRRLRKALEPSGHDAHVETVRGNGYRFTAQVPAR" FT misc_feature 158753..159061 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain, score 1.2e-21" FT misc_feature 159140..159355 FT /note="HMMPfam hit to PF00486, Transcriptional regulatory FT protein, C terminal, score 1.2e-30" FT CDS 159400..160710 FT /transl_table=11 FT /gene="phoR" FT /gene_synonym="nmpB" FT /locus_tag="BPP3997" FT /product="phosphate regulon sensor protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0159" FT /db_xref="GOA:Q7W3N4" FT /db_xref="InterPro:IPR000014" FT /db_xref="UniProtKB/TrEMBL:Q7W3N4" FT /protein_id="CAE39280.1" FT /translation="MIWLRTLFMIAFWAVMALLAQWLIGNPAGWLLFGAAMAAMLLWRS FT WRLHLVSRWAHDPESAPPAAVGPWDDILAPLYRYTRARARELAETRETMQSMLAAAQAL FT PDGVVTLNEDFQIDWANRMARRHLGLRLPADRGHNLLNLLRAPEFVAYAHRGHWPEPIL FT VRLSLNGQERVMMIHLAGYASNQRLLISRDVTQIERLETTRRDFVANVSHELRTPLTVL FT AGFLETLRELPAEALPAEQRDQYMAMMHEQARRMQAIVEDLLTLSTLESSPEADPLAVD FT VGALLRTARQQVEALSNGRHVFEWQIEEGLDVLGSGTELASALSNLLTNAVRYTPDGGR FT ITVRWRRGADGEALYSVQDTGIGIPARHLPRLTERFYRVDRGRSRAAGGTGLGLAITKH FT IAMRHDADLLIDSEPGKGSTFTLRFPAERVTGEDPDR" FT misc_feature 159400..159513 FT /note="Signal peptide predicted for BPP3997 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.996) with cleavage site FT probability 0.641 between residues 38 and 39" FT misc_feature 159433..159501 FT /note="1 probable transmembrane helix predicted for BPP3997 FT by TMHMM2.0 at aa 12-34" FT misc_feature 160006..160215 FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain, score 4.3e-23" FT misc_feature 160342..160680 FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 3.1e-38" FT CDS 160766..161443 FT /transl_table=11 FT /locus_tag="BPP3998" FT /product="two-component response regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0158" FT /db_xref="GOA:Q7W3N3" FT /db_xref="HSSP:1KGS" FT /db_xref="InterPro:IPR006291" FT /db_xref="UniProtKB/TrEMBL:Q7W3N3" FT /protein_id="CAE39281.1" FT /translation="MRILVIEDEPKLADYLHKGLSEQSHIVDVARDGVNGRHLALEGDY FT ELVILDVMLPDIDGFAVLAALRAAARNTPVLMLTARDRVEDRVRGLEGGADDYLVKPFA FT FSELLARVHALQRRGRSQESTLLRLADLELDLASRKAQRGGRRLDLTAKEFSLLALLLR FT RQGQILSRTTLAEQVWDMNFDSDTNVIDVAIRRLRGKLDDPYDAKLLHTVRGMGYVLES FT RPS" FT misc_feature 160766..161125 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain, score 1.4e-33" FT misc_feature 161201..161416 FT /note="HMMPfam hit to PF00486, Transcriptional regulatory FT protein, C terminal, score 5.8e-30" FT CDS 161440..162837 FT /transl_table=11 FT /locus_tag="BPP3999" FT /product="two-component sensor kinase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0157" FT /db_xref="GOA:Q7W3N2" FT /db_xref="InterPro:IPR003660" FT /db_xref="UniProtKB/TrEMBL:Q7W3N2" FT /protein_id="CAE39282.1" FT /translation="MRLRTPSMQRRLTLWLGVIALLASSLAGALLFWTLKQEVQRQEIT FT EARGKAELIEHLVGMQSHTPQALSDMLDGIQAGHGHLGIWITSPDGTLRYGNATPEVLS FT VTDGGEVLLRNADDTRMRGVRLTLPGPPEAGATLTVAVNTLANARFLYAYGTALLLICA FT LWIGATVVLAAWAVRRTLAPVRRLSGQAASIQPEHLDVRLPVVGIDRELSDLVASFNRT FT LDRLQEAYQQMEGFNADVAHELRTPLATLINGAQVTLSSPRSAEELREALVSNLEELED FT LKTLVNDMLFLARADRGEQAADLAPARLEQEALRVAEYFEATLEAQALHVAVQGSATCA FT ANPGLVRRALANLLANAIRATPRGATITVRCAALPDGAARLTVHNPGPPIPAADLPRIF FT DRFFRSGGARPPRGEGHGLGLAIVRAIARMHNGGVTAASGPAGTEIGFSLGARPAQDDK FT RVIRATD" FT misc_feature 161440..161526 FT /note="Signal peptide predicted for BPP3999 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.685 between residues 29 and 30" FT misc_feature join(161473..161541,161902..161970) FT /note="2 probable transmembrane helices predicted for FT BPP3999 by TMHMM2.0 at aa 12-34 and 155-177" FT misc_feature 161914..162123 FT /note="HMMPfam hit to PF00672, HAMP domain, score 3.7e-09" FT misc_feature 162133..162333 FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain, score 2e-17" FT misc_feature 162460..162795 FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 1.3e-32" FT CDS 162943..163404 FT /transl_table=11 FT /locus_tag="BPP4000" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0156" FT /db_xref="InterPro:IPR007332" FT /db_xref="UniProtKB/TrEMBL:Q7W3N1" FT /protein_id="CAE39283.1" FT /translation="MSHVSTLRRALLGALLLAPAAALANTPIPIDVWRTPTCGCCEDWL FT QHLRSNGFEVRAHMVEDTAPVRSQAGMPARYGSCHTARVQGYTVEGHVPAADIRRLLRD FT KPRAVGLTAPGMPIGSPGMDGPAYGGRRDAYDVLLVQPDGSARVFQAYR" FT misc_feature 162943..163014 FT /note="Signal peptide predicted for BPP4000 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 24 and 25" FT CDS 163485..164705 FT /transl_table=11 FT /gene="serA" FT /locus_tag="BPP4001" FT /product="D-3-phosphoglycerate dehydrogenase" FT /EC_number="1.1.1.95" FT /note="ortholog of Bordetella pertussis (BX470248) BP0155" FT /db_xref="GOA:Q7W3N0" FT /db_xref="HSSP:1HKU" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7W3N0" FT /protein_id="CAE39284.1" FT /translation="MLYRQPNMAQIVLFENIHPSARAVFSAAGYTDIVAHAAALPSGEL FT REALRGAEVVGIRSRTHLDADLLAANPDLRVVGCFCIGTNQVDLDAAMMRGVPVFNAPF FT SNTRSVAELVLGEAILLLRRIPEKNARVHLGHWDKSAAGAYEARGKTLGIVGYGNIGSQ FT ISTLAEAIGMRVVFFDVEAKLPLGNARAAGSLAELLEQADVVTLHVPGGKSTQNIVNAD FT TLARMKRGAILINASRGTVVDIQALHDALASGHLAGAALDVFPTEPKSADEPLASPLIG FT MPNVLLTPHIGGSTQESQENIGREVAEKLVRFLQAGTTKSAVNFPELSYQAPVGGSRII FT HVHRNAPGALGALDNLMAQHGLNIVSQSLQTKGQIGYAVTDVDGEVSDTVLADLRSHPV FT TVRCEKL" FT misc_feature 163506..163796 FT /note="HMMPfam hit to PF00389, D-isomer specific FT 2-hydroxyacid dehydrogenase, catalytic domain, score 3e-25" FT misc_feature 163800..164354 FT /note="HMMPfam hit to PF02826, D-isomer specific FT 2-hydroxyacid dehydrogenase, NAD binding domain, score FT 3.3e-83" FT misc_feature 163914..163937 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 163938..164021 FT /note="PS00065 D-isomer specific 2-hydroxyacid FT dehydrogenases NAD-binding signature." FT misc_feature 164076..164144 FT /note="PS00670 D-isomer specific 2-hydroxyacid FT dehydrogenases signature 2." FT misc_feature 164163..164213 FT /note="PS00671 D-isomer specific 2-hydroxyacid FT dehydrogenases signature 3." FT misc_feature 164493..164699 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01842, ACT domain, score 5e-07" FT CDS complement(164751..165626) FT /transl_table=11 FT /gene="brg1" FT /locus_tag="BPP4002" FT /product="LysR family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0154" FT /db_xref="GOA:Q7W3M9" FT /db_xref="HSSP:1IXC" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W3M9" FT /protein_id="CAE39285.1" FT /translation="MIREFKTFIAVARGGTFTGAGRRLGLTQSAVSAQIKRLEEHLGVA FT LFERTGKSAALNHHGRSLLPQAEALVAMADRVVGMAGAGRVSGLLRVGAIASVQQDLLV FT RALAALRAEHPDVRVRIVPGVSLTLLGHVDAGEVDLAVLIRPPFALPPELEWQPLLREP FT MVLAVPEAAPEAPWRELLAGQPFIRYDRASFGGRLVDMFLKRHRLDVREAIELDEIDAI FT ANLVRHGLGVALLPHTRHLDARGLRLLELDDQVRFAREIGLIVRQPLGQSPLAQRLAQC FT LRAAVSFGEA" FT misc_feature complement(164766..165380) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 1.3e-42" FT misc_feature complement(165444..165623) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1e-21" FT misc_feature complement(165489..165581) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 165728..166159 FT /transl_table=11 FT /locus_tag="BPP4003" FT /product="probable dioxygenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0153" FT /db_xref="GOA:Q7W3M8" FT /db_xref="InterPro:IPR004360" FT /db_xref="UniProtKB/TrEMBL:Q7W3M8" FT /protein_id="CAE39286.1" FT /translation="MSTPSPIPPFHLAFPVRDLAEARDFYGALLGCPEGRSSPEWIDFN FT FYGHQIVAHLAPQACGSAATNAVDAHNVPVRHFGAVLSMDQWEALAGKLTDAGTEFVIE FT PYIRFKGEVGEQATMFFLDPSGNALEFKAFKNIESLFAK" FT CDS 166178..166912 FT /transl_table=11 FT /locus_tag="BPP4004" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0152" FT /db_xref="InterPro:IPR003833" FT /db_xref="UniProtKB/TrEMBL:Q7W3M7" FT /protein_id="CAE39287.1" FT /translation="MPLTVSPPPPSSAPAGWRILPQGDRCLIVWFGDRIDAGVGRACLA FT AAGLLRAAGLAGVTDVVPSFAAVAVHYRPGPDGAPGYSMLAAQVERLLAGGIPVDDSAG FT REMEIPVCYGGEHGPDLEEATRAAGLTPEALVALHGAPGSMVYMLGFAPGHSYIGVHDA FT RLDLPRRATPRTAVPAGSVAIANRQTVIYPARLPGGWNIIGATPLNLFDPGREPAALLQ FT PGDRIRFVPIDAAEFDRLREAQ" FT misc_feature 166226..166840 FT /note="HMMPfam hit to PF02682, Uncharacterized ACR, FT COG2049, score 1e-51" FT CDS 166909..167922 FT /transl_table=11 FT /locus_tag="BPP4005" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0151" FT /db_xref="InterPro:IPR003778" FT /db_xref="UniProtKB/TrEMBL:Q7W3M6" FT /protein_id="CAE39288.1" FT /translation="MSLAVIKPGMLSTFQDGGRHGYQHQGIPVAGAMDPRAHRLANLLA FT GNAADTATLEITVAGPTLRFEAPACVALGGADLGATLGGLPAPVLRPLVARAGDVLSFA FT RPGQGARAYLAVHGGYDLPMVMGSQSTYLRSAFGGYHGRALAKGDQVGLRRPLADDAAR FT LDALAQQLWQLRFYLAATLSSPPRDVLRILPGPHWEAFDAASRQALLDQAFRIGAQSDR FT MGYRLEGPRLRLSERREMLSEATCFGTVQVPADGAPIVLMADRQTTGGYPKLAQVATVD FT LPSLAQAMPGQALRFALIELEQAQRLDAAREAAFAQLTGQLDALRGLLRNFQEPTP" FT misc_feature 166978..167850 FT /note="HMMPfam hit to PF02626, Uncharacterized ACR, FT COG1984, score 1.6e-100" FT CDS 167919..168677 FT /transl_table=11 FT /locus_tag="BPP4006" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0150" FT /db_xref="InterPro:IPR005501" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3M5" FT /protein_id="CAE39289.1" FT /translation="MNPAIDLNCDMGESYGAWRMGNDEAVLQFVTSANIACGFHGGDPS FT TMRQTVAAALAHGVALGAHPSLPDLAGFGRRAMQITPQEAYDLVVYQVGALAGVAASQG FT ARLHHVKAHGALYNMAAKDAALARAICQAVRDVDSDLVLYGLAGSALIDAARAIGLRAA FT QEVFADRTYQADGQLTPRSQPDAMITDLDQAIAQVLGMVRDGSVRTPDGQTVALQADTL FT CIHGDQPDALVFARGIRLALERNGIAIQAA" FT CDS complement(168688..169470) FT /transl_table=11 FT /locus_tag="BPP4007" FT /product="probable transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0149" FT /db_xref="GOA:Q7W3M4" FT /db_xref="InterPro:IPR005471" FT /db_xref="UniProtKB/TrEMBL:Q7W3M4" FT /protein_id="CAE39290.1" FT /translation="MSAPKASRPARDRQFASTLAHGLQLLRCFTPEAAVLSNRQLSELS FT GLSKPTVSRYTYTLIELGYLKVDPVSGKFQLGNAVLTLSYPLLANIALRQVVRSPMREL FT AERLGCSVSLCMRERLSMVYVETSRSRSLRAQRYSDIGMSHPIIATSNGRAYLAACSAD FT ERNTLFNQIRVKTPEHWERWGESALDMIQFWGRHGFCYSHGEYRPDVATVGVPYRPSSG FT GELYVFNCVLGSQFVKPGQLENEVGPALLEMTSVLPYA" FT misc_feature complement(168694..169251) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator, score 7.5e-09" FT CDS 169637..170560 FT /transl_table=11 FT /locus_tag="BPP4008" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0148" FT /db_xref="GOA:Q7W3M3" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7W3M3" FT /protein_id="CAE39291.1" FT /translation="MAASSAHADTFPSRPIRLIVPFGPGGITDLIARQAALGMAEKLGQ FT PVIIENKPSAGHIVAMQTVAQATPDGYTILLGSNTGFTVAPHMYKNLPFRIDTLQPIAP FT INTAPTVLLARPDFPANNLTELIQYIKDNPGKLNYGSFGIGTSAHLGMEIMKSDLGLNI FT MHIPYRGDAQGLLALKAKEVDIAYITLFSAQARIRAGEFKALGVLQNDRLTAFPDIQTT FT VEVGSKNSGMPVWIAFFAPPGTPDAVMRKLESATRSASSAPAFVEFLHNNGVEPWNPSN FT QDLMRFIQDQLNRSGPIIQEIGLQPQ" FT misc_feature 169727..170548 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 7.9e-163" FT CDS 170623..171843 FT /transl_table=11 FT /locus_tag="BPP4009" FT /product="putative hydroxylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0146" FT /db_xref="GOA:Q7W3M2" FT /db_xref="InterPro:IPR003042" FT /db_xref="UniProtKB/TrEMBL:Q7W3M2" FT /protein_id="CAE39292.1" FT /translation="MRVIIAGCGIGGAALAVALEKFKIDHVVLEQAPRLEEVGAGVQLS FT PNGVAVLQHLGVHEALSKVAFEPRDLLYRDWQSGQVLMRNPLMPTIKEHFGAPYYHAHR FT ADLLGVLTERLDPAKLRLGSRIVDIEQDARQVTATLADGTRIQGDILVGADSIHSLVRS FT RFFQADQPQASGCIAWRGIVDADAARHLDISPSAHLWLGPERSAVIYYVSGGRKINWIC FT IGSRPGDRKESWSATTTVDEVLREYAGWNEQVTGLIRLTDKPFVTALYDRAPLDSWING FT RIALLGDSAHAMLPYHAQGAVQSMEDAWVLARTLQQSGGDIPPALERYQSLRKDRTARV FT QAQSQLAEKRFHMSDPEQVARRNQKFLHYDAQYRGTFLPQQEWLFGYDADKAPLGTDDA FT WRALRAW" FT misc_feature 170623..170676 FT /note="Signal peptide predicted for BPP4009 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.926) with cleavage site FT probability 0.464 between residues 18 and 19" FT misc_feature 171061..171657 FT /note="HMMPfam hit to PF01360, Monooxygenase, score 7e-52" FT CDS 171864..172676 FT /transl_table=11 FT /locus_tag="BPP4010" FT /product="putative enoyl-CoA hydratase/isomerase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0145" FT /db_xref="GOA:Q7W3M1" FT /db_xref="HSSP:1EY3" FT /db_xref="InterPro:IPR001753" FT /db_xref="UniProtKB/TrEMBL:Q7W3M1" FT /protein_id="CAE39293.1" FT /translation="MNKSDSFELIEYQAADGIARIAHNRPQARNAESQGLLEELDRALG FT MAVRDASVKAIVISGNGDHFSAGHDLKEAAAKRSNFTVEQRWEFEERYYLGYAMHIYDC FT PKPTIAQVSGACIAGGFMVANMCDLIVASDDAFFSDPVCQTLATAAVEVMIHPWVMGAR FT KAKEFLFLGERMSAREALAIGMVNKVVARAELQAETERMAQRIAACDPFALRLVKRSIN FT RGLEMQGLRSAIDAHFDTHQLSHLSEGFNRARAQGLGNAIQAAAAGSR" FT misc_feature 171918..172436 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family, score 1.5e-32" FT CDS 172682..173617 FT /transl_table=11 FT /locus_tag="BPP4011" FT /product="putative lipase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0144" FT /db_xref="GOA:Q7W3M0" FT /db_xref="InterPro:IPR013094" FT /db_xref="UniProtKB/TrEMBL:Q7W3M0" FT /protein_id="CAE39294.1" FT /translation="MASAQLATLSAQVRQLYAGWDQNPDIARIRRDWDAFFGAVRLPAR FT VTPVDAGGVPCHWIEAPASTRDRVVVFIHGGGYQIGSHRSHHNLMARLSACSGRAVLSI FT GYRLAPQARCPAALEDVDAAHAWLAGQGWAARQTALCGDSAGGALAVLLLARLRARGAA FT LPAACAVMSPWIDLQARGESYTANAASDPIANRATVLRMARAYLGRDGDPEAPAVSAQH FT ADLRGLPPLLVQAGSAEALLDDARALAARAAASGVAVRLSVWQDMPHVFQLFAARLDAA FT DAAIAELADFINHPLRAARTGAEPHHETST" FT misc_feature 172889..172939 FT /note="PS01173 Lipolytic enzymes G-D-X-G family, putative FT histidine active site." FT CDS join(173631..174308,174310..174825) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP4012" FT /product="conserved hypothetical protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0143" FT /db_xref="PSEUDO:CAE39295.1" FT misc_feature join(173829..174308,174310..174411) FT /note="HMMPfam hit to PF02515, CAIB/BAIF family, score FT 1.9e-80" FT CDS complement(174922..175707) FT /transl_table=11 FT /locus_tag="BPP4013" FT /product="GntR family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0142" FT /db_xref="GOA:Q7W3L9" FT /db_xref="InterPro:IPR011711" FT /db_xref="UniProtKB/TrEMBL:Q7W3L9" FT /protein_id="CAE39296.1" FT /translation="MRYLCFNVYLVFSYICKLRRPAAKEFILDVKAPATIPYFLKEQIR FT ELIVDGTFRPGQPLREQDLEQRFGTSRSPIREALRLLERGGLVVHLQRKGFRIRRYSQT FT EIRQVYMLYAELEAYSIMQLSEAADLSPLLDDLRRHEARIAQAQADADVRGYIGALRDF FT YLASARFTGNVPLADTLSRLYEQVEPLRYNLVRRTLAATPADQYHRGIVPALAQRDLAG FT AARQAHVLVREMLPRILSAYEQWAGDAGDEPGDDRLRVA" FT misc_feature complement(175414..175590) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 1.1e-11" FT misc_feature complement(175462..175536) FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT CDS complement(175760..179722) FT /transl_table=11 FT /locus_tag="BPP4014" FT /product="probable iron-sulfur binding oxidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0141" FT /db_xref="GOA:Q7W3L8" FT /db_xref="InterPro:IPR017900" FT /db_xref="UniProtKB/TrEMBL:Q7W3L8" FT /protein_id="CAE39297.1" FT /translation="MNAPLASQILTAAIPPAPGARLREIPYNYTSFSDREIVSRLLGED FT AWQLVSDLRGERRTGRSARMLYEVLGDIWVVRRNPYLQDDLLDNPKRRKLLIEALHHRL FT GEIDKRREPAAVTEAGHDPRRDAKVVELLARARSAVAAFEGQFDQTAQLRRQAQRVLGR FT ITARDNIKFDGLSRVSHVTDATDWRVEYPFVVLTPDSEDEIAALVRACIELGLTIVPRG FT GGTGYTGGAIPLTWKLAVINTEKFEALGEVESCVLPGMTEPAAVIRAGAGVVTKRVAEA FT AERAGFVFAVDPTSAEASCVGGNIAMNAGGKKAVLWGTALDNLAWWRMVDPDGNWLEVT FT RLAHNLGKIHDVDVASFELKWFDGAGKPGEKLLRTERLDIEGRKFRKAGLGKDVTDKFL FT AGLPGVQKEGCDGLITSARWVLHRMPRHTRTVCMEFFGQARDAIPSIVEVKGYLDGEGK FT ARGAILAGLEHLDERYLRAVGYATKSKRGMLPKMVLIGDIVGDDEDAVATAASEVVRLA FT NTRHGEGFVAVSAEARKKFWLDRSRTAAIARHTNAFKINEDVVIPLDRMGEYTDHIERI FT NIELSTRNKLRLLDELDAYLAEPLPMGKVEDAEDVALTRAEVLAERTRQAIEHLARTRR FT RWQWLLDNLDLPLAQALPELDGLDMAAQREALAGRVQAQPQARVFDVVQDHTVRISWKT FT EVLPALQGVFSGNAGKLILEGLVAVHARVLKSRVFVALHMHAGDGNVHTNIPVNSDDYG FT MLREANQAVERIMQIARDLDGVISGEHGIGLTKYEFLTEAELAPFQEYKRRVDPNGHFN FT AGKLMPGADLRHAWTPSFNLMGHESLIMQQSDIGAIADSVKDCLRCGKCKPVCSTHVPR FT ANLLYSPRNKILATSLLVEAFLYEEQTRRGISLKHWEEFEDVADYCTVCHKCYTPCPVD FT IDFGDVSMNMRALLRRMGRKSFNPGTAAAMFFLNAKDPAAINATRKAMVGVGYKVQRAA FT HDLLASVSRKQAAHPPATVGRAPLREQVVHFVNRKMPGGLPKQTARKLLDIEDANYVPI FT IRDPKTTTADTEAVFYFPGCGSERLFSQVGLATQAMLWHAGVQTVLPPGYLCCGYPQRG FT NGMTDKAEQIITDNRVLFHRVSNTLNYLDIKTVVVSCGTCYDQLAGYEFEKIFPGCRLI FT DIHEYLLEKGIKLDGVQGVRYMYHDPCHTPMKLQDPMKTVRSLVGEGAQKSDRCCGESG FT TLAVSRPDVSTQVRFRKQEELDQGQAAMRADGFSGDVKVLTSCPSCLQGLSRYEGETGM FT DADYIVVEMARHILGETWMEDYVRRANTGGIERVLV" FT misc_feature complement(176939..176974) FT /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding FT region signature." FT misc_feature complement(176957..176974) FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature complement(177110..177181) FT /note="HMMPfam hit to PF00037, 4Fe-4S binding domain, score FT 0.091" FT misc_feature complement(177275..177991) FT /note="HMMPfam hit to PF02913, FAD linked oxidases, FT C-terminal domain, score 3.5e-05" FT misc_feature complement(178511..179149) FT /note="HMMPfam hit to PF01565, FAD binding domain, score FT 9.6e-34" FT CDS complement(179846..180382) FT /transl_table=11 FT /locus_tag="BPP4015" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0140" FT /db_xref="UniProtKB/TrEMBL:Q7W3L7" FT /protein_id="CAE39298.1" FT /translation="MEQSLLDAVHWLLAVLALPKVGLSAVFLVSLLSATLLPLGSEAAV FT YGFVKLVPDMFWPTVLVATVGNTAGGAISYYMGLWAHRAVERWRARHPHERQDGFQSRL FT GGRWNARARIWLHRMGPPALLLSWLPAVGDPLCAVAGWLRLSFWPCLAYMAIGKFLRYA FT LLTGALLWALPELHM" FT misc_feature complement(join(179864..179929,179945..180010, FT 180152..180217,180278..180343)) FT /note="4 probable transmembrane helices predicted for FT BPP4015 by TMHMM2.0 at aa 13-35, 55-77, 124-146 and FT 151-173" FT CDS 180469..181977 FT /transl_table=11 FT /gene="ilvA" FT /locus_tag="BPP4016" FT /product="threonine dehydratase biosynthetic" FT /EC_number="4.3.1.19" FT /note="ortholog of Bordetella pertussis (BX470248) BP0139" FT /db_xref="GOA:Q7W3L6" FT /db_xref="InterPro:IPR000634" FT /db_xref="UniProtKB/TrEMBL:Q7W3L6" FT /protein_id="CAE39299.1" FT /translation="MSTDYLKRILTSKVYDVAVESPLERAPLLSQRIANNVLLKREDTQ FT AVFSFKLRGAYNKMANLTPAARSRGVIAASAGNHAQGVALAATRLGCRAVIVMPTTSPQ FT VKVDAVRRLGGEVVLAGDSFTDAYEHAQQLEKSEKLTFVHPFDDPDVIAGQGTIGMEIL FT RQHPGEIEATFVAIGGGGLIAGVAAYIKQLRPEIKIIGVQTEDSDAMVRSVRAGRRVQL FT SDVGLFSDGTAVKLVGAETFRLARQYVDDFVVVNTDAICAAIKDVFQDTRSVLEPAGAM FT AVAGAKQYAAEHKLKGKTLVAVACGANMNFDRLRFVAERAEVGEMREAVFAVTMPEQRG FT SFRRFCELVGNRSVTEFNYRISDAERAHVFVGVQVSTPAEPEKIAANFRRHGFDTLDLT FT HDELAKTHLRHMVGGHSALARNELLYRFEFPERPGALMRFLNAMNPDWNISLFHYRNQG FT ADYGNILIGIQVPPTDKKLFKTFVAELGYPHWNETDNPAYRLFL" FT misc_feature 180508..181389 FT /note="HMMPfam hit to PF00291, Pyridoxal-phosphate FT dependent enzyme, score 1.3e-97" FT misc_feature 180592..180633 FT /note="PS00165 Serine/threonine dehydratases FT pyridoxal-phosphate attachment site." FT misc_feature 181096..181143 FT /note="PS00063 Aldo/keto reductase family putative active FT site signature." FT misc_feature 181423..181692 FT /note="HMMPfam hit to PF00585, C-terminal regulatory domain FT of Threonine dehydratase, score 1.1e-39" FT misc_feature 181705..181971 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00585, C-terminal regulatory domain FT of Threonine dehydratase, score 1.8e-34" FT CDS complement(182067..183173) FT /transl_table=11 FT /locus_tag="BPP4017" FT /product="outer membrane porin" FT /note="ortholog of Bordetella pertussis (BX470248) FT BP0267+BP0138" FT /note="Similar to Bordetella pertussis outer membrane porin FT protein precursor SWALL:OMP_BORPE (SWALL:Q04064) (385 aa) FT fasta scores: E(): 1.2e-72, 59.89% id in 389 aa, and to FT Ralstonia solanacearum probable porin signal peptide FT protein RS02026 SWALL:Q8XTQ5 (EMBL:AL646076) (382 aa) fasta FT scores: E(): 4.3e-23, 31.19% id in 359 aa" FT /db_xref="GOA:Q7W3L5" FT /db_xref="HSSP:1E54" FT /db_xref="InterPro:IPR002299" FT /db_xref="UniProtKB/TrEMBL:Q7W3L5" FT /protein_id="CAE39300.1" FT /translation="MKKTLLAVALATGFAGAAQAADSVTLYGLIDAGLGYEQVKFKGQS FT QSRIGTVQGVSSGSRFGLRGSEDLGDGLRAVFNLEAGFGPLNGNSLQSGRLFGRQATVG FT LDSDAWGRLEFGRQTNLASKFFGSIDPFSVSYNSANMGTTFSAANTMRLDNMVLYQTPS FT LDGFKFGVGYSFSADDTLDDDSNFATAGNNRVLTTGLQYLNGPVNLALTYDRFNPNDDR FT AGGKSDARVQQYAIGGTYDFEVVKLAAAFGQTRDGWFVGQNMGTTPDGFNKLSSFMLAD FT GFRANSYMIGATVPLGRSSVFGSWQRATPSNDKLTGDDATFNVYSLGYTYDFTKRTNLY FT AYASYGKNYAFQRDAKDTAVAMGIRHRF" FT misc_feature complement(182073..183068) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00267, Gram-negative porin, score FT 1.2e-05" FT misc_feature complement(183114..183173) FT /note="Signal peptide predicted for BPP4017 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 20 and 21" FT CDS complement(183383..183766) FT /transl_table=11 FT /locus_tag="BPP4018" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0266" FT /db_xref="UniProtKB/TrEMBL:Q7W3L4" FT /protein_id="CAE39301.1" FT /translation="MKRHALATALMVSVTLAGMSAAHADGKTREQVRAELVAAKAAGQV FT TFGELDYPPAAAPAAGKSRADVAAELQEAKAAGQVTFGELDYPAPAAAPAAGKTREQVR FT AELAAAKAAGEVTFGELDYPPAK" FT misc_feature complement(183470..183493) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(183578..183601) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(183683..183706) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(183695..183766) FT /note="Signal peptide predicted for BPP4018 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.989 between residues 24 and 25" FT CDS 184010..184900 FT /transl_table=11 FT /locus_tag="BPP4019" FT /product="probable LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0265" FT /db_xref="GOA:Q7W3L3" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W3L3" FT /protein_id="CAE39302.1" FT /translation="MDIQLNDIALFVEVAKRKNFSHAAEALNIPTSTLSRRVSELERGL FT GMRLLNRSTRRIDLTEAGALYFERCRHIVEEARVAHEQLQDMAAQPKGRLRISLPTSLA FT QLFLTDVIPEFRSLYPDIECDFDLSMRPVDPISNPFDLVLRFGQQPDSSLVARQIVLMT FT QHLYAAPQYLALHGEPRVPADLGHHECLRPSMSDAFSYWVLQSGDKVERVQVSGRLAAN FT NIGMLGRLASQGLGITPLVMSDSMTRAIRQAGLVRVLPDWALTPIPLFALMPSRMVPAK FT TRAFLDFIQPRLNAG" FT misc_feature 184022..184201 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 6.1e-20" FT misc_feature 184064..184156 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 184271..184891 FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 2.5e-38" FT CDS complement(184913..185488) FT /transl_table=11 FT /gene="apt" FT /locus_tag="BPP4020" FT /product="adenine phosphoribosyltransferase" FT /EC_number="2.4.2.7" FT /note="ortholog of Bordetella pertussis (BX470248) BP0264" FT /db_xref="GOA:Q7W3L2" FT /db_xref="InterPro:IPR000836" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3L2" FT /protein_id="CAE39303.1" FT /translation="MLLFPGTFTMQTDYAELVRRTIRSVPDWPTPGVTFRDITPVLQDP FT RTFRVLIDLFVYRYMRQRLDLVAGVDARGFIVGAVLAHELNLGFVPVRKKGKLPYRTVA FT EEYSLEYGNAAVEMHTDSVRTGQRVLLVDDLIATGGTMLAAIKLLQRLGANVVEAAAII FT DLPYLGGSAQITATGTPLYTVCQYQEGD" FT misc_feature complement(184925..185392) FT /note="HMMPfam hit to PF00156, Phosphoribosyl transferase FT domain, score 1.4e-43" FT misc_feature complement(185066..185104) FT /note="PS00103 Purine/pyrimidine phosphoribosyl FT transferases signature." FT CDS complement(185524..187203) FT /transl_table=11 FT /locus_tag="BPP4021" FT /product="probable ATP-binding component of ABC FT transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP0263" FT /db_xref="GOA:Q7W3L1" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W3L1" FT /protein_id="CAE39304.1" FT /translation="MSLWRLLFRLYARRKGALALALALSLLTVAAGVGLLGVSGWFLTG FT AALAGAGAVFNLFVPSSLVRGLSFIRIASRYGERLAGHAATLRLLADLRASVFRSLVRL FT TPRQLARYRGGDLVARLTSDVDALDTVFLFVLAPVAVALAGGAILTAVMGAWIPAAALV FT VAAALLLCCGVAPWWLARAGRRPGAAVQESAAALRAATLDAVEGHADIAALHAGAQARA FT QFADACEQSARARAAQVRIAARGQWLAQLAAGAAVLAVLWFGLDGLAAGELSGPLLAGL FT LLATIGIFEVAGPVMRGVSRLGAAVAAAARIGEIAAREPDLRDPAAPRALPPAGELALE FT DVTFAYPVPDAAARPVLDGASLRVAPGQRVAIVGASGAGKSTVLQLLLRLEDPQRGAVR FT YAGCDVRECAQAELHRRVALLSQDAPLLLGTVRTNLLIGDAQADDAALWRALDAARLGE FT VVRGLPHGLDTWIGETGAGLSAGQARRLCLARALLTGASAILLDEPTAGLDAATEAELL FT ADLARATQGRTVVLATHARLLPGTVDTVYTLQAGRLHRAAPM" FT misc_feature complement(185551..186105) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 5.7e-47" FT misc_feature complement(185728..185772) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(186061..186084) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(join(186319..186384,186415..186480, FT 186667..186732,186745..186810,186997..187062, FT 187078..187143)) FT /note="6 probable transmembrane helices predicted for FT BPP4021 by TMHMM2.0 at aa 20-42, 47-69, 131-153, 157-179, FT 241-263 and 273-295" FT misc_feature complement(186319..187152) FT /note="HMMPfam hit to PF00664, ABC transporter FT transmembrane region, score 9.7e-08" FT misc_feature complement(187057..187203) FT /note="Signal peptide predicted for BPP4021 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.716 between residues 49 and 50" FT CDS complement(187200..188951) FT /transl_table=11 FT /locus_tag="BPP4022" FT /product="probable ATP-binding component of ABC FT transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP0262" FT /db_xref="GOA:Q7W3L0" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W3L0" FT /protein_id="CAE39305.1" FT /translation="MSGASGIEHDPAAALNKPPREHSRWLAMRARAARAPLAVAGAAPL FT IGGVLLVIQAWLLARVLDQAIVQGAARAELATSIVAIAALMLARAALAWLGERAGAAAA FT ERIKRQVREALFARLLALGPQWSRQRASGELASAMVEQVEALDAFFAKYLPAMGAAAVL FT PVAFAVVVLPVDVIAGLLLLVTAPLIPLFMALVGWGAEAASRRHLQAFARLSGFFADRL FT RGLATLKLYGRAEAEAQSVVAASDALRQRTMAVLRIAFLSSAVLEFFAALGVAGVAVYI FT GLTYLGFLDVRASVLTLQGGFFCLLLAPEVYGPLRQFAAHYHDRAAARAAVAQIARTFD FT GLPSPGVEPAPPAPAPALARGAARLAASGLTVTQPGRRAPVLREAALQLDAGAHVALRG FT ASGAGKTTLLELLARLRDGAGAIALDGVPLADWDEAALRERVVLIGQRPYLYAGSIADN FT IRLARPGASAALVEEAARRACVMEFAQALPRGLDTPLGSRGHGLSGGQAQRVALARLFL FT RDPGLILLDEPAAHLDAATQARVLDEVLAFAQGRTLLLATHADAVARRLPRQWMLEQGR FT LRELQPA" FT misc_feature complement(187227..187778) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 4.7e-47" FT misc_feature complement(187404..187448) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(187734..187757) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(188034..188843) FT /note="HMMPfam hit to PF00664, ABC transporter FT transmembrane region, score 7.8e-20" FT misc_feature complement(join(188109..188174,188358..188423, FT 188439..188504,188664..188729,188775..188840)) FT /note="5 probable transmembrane helices predicted for FT BPP4022 by TMHMM2.0 at aa 37-59, 74-96, 149-171, 176-198 FT and 259-281" FT CDS complement(188948..189073) FT /transl_table=11 FT /locus_tag="BPP4023" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0261" FT /db_xref="InterPro:IPR012994" FT /db_xref="UniProtKB/TrEMBL:Q7W3K9" FT /protein_id="CAE39306.1" FT /translation="MWYFSWILGLSLACAFGILNAMWFELREGHAHDPYKKPADE" FT misc_feature complement(189002..189067) FT /note="1 probable transmembrane helix predicted for BPP4023 FT by TMHMM2.0 at aa 2-24" FT misc_feature complement(189011..189073) FT /note="Signal peptide predicted for BPP4023 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.954) with cleavage site FT probability 0.819 between residues 21 and 22" FT misc_feature complement(189032..189064) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(189087..190241) FT /transl_table=11 FT /gene="cydB" FT /gene_synonym="cyd-2" FT /locus_tag="BPP4024" FT /product="cytochrome D ubiquinol oxidase subunit II" FT /EC_number="1.10.3.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0260" FT /db_xref="GOA:Q7W3K8" FT /db_xref="InterPro:IPR003317" FT /db_xref="UniProtKB/TrEMBL:Q7W3K8" FT /protein_id="CAE39307.1" FT /translation="MDSLIPFDYATLRVLWWLLLGALLIGFAVMDGFDLGVAALLPLVA FT KTDVERRVVLNVVGPVWEGNQVWLITAGGAIFAAWPLLYAASFSGFYLAMMLVLIALIL FT RPVGFKYRSKMEGTRWRSRWDAVLCFCGVVAALVFGVAMGNIILGVPFGFDAATLRPEY FT EGHFYQLFKPFALLAGLVSVAMMVMHGGVLLAWRTHDPVSSRARNWGRLAALVTAALFV FT AGGFWVAYGLDGHVITSAVDMHAPSNPMLKTVELQAGGWMANYEKWPLTWIAPALGVGG FT ALLAFVLLSARANVLAFLASSVSIAGIILTVGFALFPFIMPSSSRPGAGLTVWDGSSSL FT LTLWIMLLAVAFFLPIITVYTAWVYRVMRGKVTEDSVDGTPNSY" FT misc_feature complement(189123..190214) FT /note="HMMPfam hit to PF02322, Cytochrome oxidase subunit FT II, score 3.3e-148" FT misc_feature complement(join(189156..189221,189282..189347, FT 189369..189434,189549..189614,189654..189719, FT 189798..189863,189927..189992,190152..190202)) FT /note="8 probable transmembrane helices predicted for FT BPP4024 by TMHMM2.0 at aa 13-30, 83-105, 126-148, 174-196, FT 209-231, 269-291, 298-320 and 340-362" FT CDS complement(190257..191876) FT /transl_table=11 FT /gene="cydA" FT /gene_synonym="cyd-1" FT /locus_tag="BPP4025" FT /product="cytochrome D ubiquinol oxidase subunit I" FT /EC_number="1.10.3.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0259" FT /db_xref="GOA:Q7W3K7" FT /db_xref="InterPro:IPR002585" FT /db_xref="UniProtKB/TrEMBL:Q7W3K7" FT /protein_id="CAE39308.1" FT /translation="MSAVRAGLPSGSVSMIDLDVVNLSRFQFAATALYHFLFVPLTLGL FT SFILAIMESVYVMTGRQIWKRMTMFWGTLFGINFALGVATGVVMEFQFGMNWSYYSHYV FT GDIFGAPLALEGLMAFFLEATFVGLFFFGWNRLSKVGHLVVTWLVAFGTNFSALWILIA FT NGWMQNPVGAMFNPDTMRMEMTDFAAVLLNPVAQAKFVHTVSAGYVAGAMFVMSISAWY FT LLKGRHIDLAKRSMAVAASFGLASALSVVVLGDESGYLTTEHQKMKIAAIEAMWHTEPA FT PASFNLIAIPNQEERRNEFAISIPYVMGLIGTRSLTTPLLGIDDLVRRAEVRIREGITA FT YEALQRVRANPKDVDARMLFERTWPDLGYALLVKRYQPDLSKATDEQIAQAALDTVPNV FT APLFWAFRVMVAVGFYLILFFGVAFWLASRGRLDSRPGLLKVALWSLPLPWVAIESGWF FT VAEDGRQPWVIEGVLPTYYAASGLTITDLAISLAIFLVLYTVLLVIGVKVMLHAVKAGP FT KGEASEPAGRRADPVQAAVDAY" FT misc_feature complement(190305..191810) FT /note="HMMPfam hit to PF01654, Bacterial Cytochrome FT Ubiquinol Oxidase, score 2.3e-254" FT misc_feature complement(join(190359..190424,190497..190562, FT 190602..190667,191115..191165,191205..191270, FT 191388..191453,191475..191540,191601..191666, FT 191727..191792)) FT /note="9 probable transmembrane helices predicted for FT BPP4025 by TMHMM2.0 at aa 28-50, 70-92, 112-134, 141-163, FT 202-224, 237-254, 403-425, 438-460 and 484-506" FT CDS complement(191960..192505) FT /transl_table=11 FT /locus_tag="BPP4026" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0258" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W3K6" FT /protein_id="CAE39309.1" FT /translation="MALSPQTERFVLHFGEMGSRWGVNRTVGQIYALLFLSPKALHADD FT IAEALGFSRSNVSMGLKELQSWRLVKLMHQVGDRRDYFETPKDVWEIFRILMEEKRKRE FT IDPTLTLLRDTLLERPADEAQAYAQQRMHEMLELIELSTGWFDEVQRLPPETLQNLMKL FT GSKVQKVLGFAGKLRGKD" FT CDS complement(192648..193868) FT /transl_table=11 FT /gene="purT" FT /locus_tag="BPP4027" FT /product="phosphoribosylglycinamide formyltransferase 2" FT /EC_number="2.1.2.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0702" FT /db_xref="GOA:Q7W3K5" FT /db_xref="HSSP:1KJI" FT /db_xref="InterPro:IPR005862" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3K5" FT /protein_id="CAE39310.1" FT /translation="MSTFPAPVLGTPLSPTATRVMLLGAGELGKEVVIALQRLGVEVIA FT VDRYADAPGHQVAHRAHVVSMTDPQALRQVIEQERPHVVVPEIEAIATDLLVALEDEGA FT VRVTPTARAAHLTMNREGIHRLAAETLGLPTSPYRFVDTEQALREAIDGGIGYPCVIKP FT VMSSSGKGQSIIRSADDIAAAWRYAQEGGRVGAGRVIVEGFIEFDYEITLLTVRARGAD FT GQIVTQFCEPIGHRQVDGDYVESWQPHPMSPAALQRSREIALAVTGDLGGLGIFGVELF FT VAGDQVWFSEVSPRPHDTGMVTLISQVQNEFELHARALLGLPVDTRLRQPGASSVIYGG FT VEARGVAFEGVAQALAEPGTDIRLFGKPESFAKRRMGVGLAVADDVDQARAKAARVSQA FT VRVRAGA" FT misc_feature complement(193221..193733) FT /note="HMMPfam hit to PF02222, ATP-grasp domain, score FT 1.3e-36" FT CDS 193974..194963 FT /transl_table=11 FT /locus_tag="BPP4028" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0701" FT /db_xref="GOA:Q7W3K4" FT /db_xref="InterPro:IPR001347" FT /db_xref="UniProtKB/TrEMBL:Q7W3K4" FT /protein_id="CAE39311.1" FT /translation="MSAHPDPTPEAILASARRTLQTEAQAIADLAARLDDSFVQVVGML FT LACRGRVVVSGIGKTGHIARKLAATLASTGTPAFFVHAAEAIHGDLGMVTRDDVLIAIS FT YSGTGQELLTILPVVRRMGAGLIAITGNAESELARLADVHLDASVSQEACPLNLAPTAS FT TTAALALGDALAVACLEARGFGREDFARSHPGGALGRRLLTHVRDVMRHGPALPIVAED FT APLPRALEEISAKGMGMTAVVDAQRKPVGIFTDGDLRRLIERVGDIRSLTVADGMTRAP FT RTIGPDALAAEAAQQMDDRRLNQMLVVDTAGVLIGALHTHDLMAAKVV" FT misc_feature 194100..194504 FT /note="HMMPfam hit to PF01380, SIS domain, score 2e-33" FT misc_feature 194601..194762 FT /note="HMMPfam hit to PF00571, CBS domain, score 4.4e-07" FT misc_feature 194796..194957 FT /note="HMMPfam hit to PF00571, CBS domain, score 7.1e-09" FT CDS 194960..195568 FT /transl_table=11 FT /locus_tag="BPP4029" FT /product="probable hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0700" FT /db_xref="GOA:Q7W3K3" FT /db_xref="HSSP:1K1E" FT /db_xref="InterPro:IPR006549" FT /db_xref="UniProtKB/TrEMBL:Q7W3K3" FT /protein_id="CAE39312.1" FT /translation="MTKNSPVSVPHPAEALVLARIPASVRERAAAVRLMVFDVDGVLTD FT GGLYYGEHGEMFKRFHALDGHGLRLLMEGGLKVALITGRSGPIADRRAAELGIAEVLQG FT VRDKGGALSELAQRVGVQLNQTGYMGDDIIDLPAMQRAGFAASVANAPGYVAQAAHWVS FT SQPGGQGAVRECCDLLLAAQGRLGTFLGTPALLGPGAIQ" FT misc_feature 195053..195415 FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase, score 0.1" FT CDS 195581..196210 FT /transl_table=11 FT /locus_tag="BPP4030" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0699" FT /db_xref="InterPro:IPR010664" FT /db_xref="UniProtKB/TrEMBL:Q7W3K2" FT /protein_id="CAE39313.1" FT /translation="MKERFPSLIALFLLLALVVGTWWAADYAQRAVQVDPPRRLTHEMD FT SWARNFVMLRTDVQGRPINRLEGVYVEHFPDDDSYHVTTPRAIGQQAGNPITIGVSKTA FT IMEQGGQRIVMNGDAHVHRQPDARNETLDVRSQQLILLPDDDVVFTDLPAQVNKGNSRM FT NGTGMHYNNKTRQLRVSAAADVEIAGTEGRKRQSTETPANSNQNKP" FT misc_feature 195581..195664 FT /note="Signal peptide predicted for BPP4030 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.991) with cleavage site FT probability 0.508 between residues 28 and 29" FT misc_feature 195599..195652 FT /note="1 probable transmembrane helix predicted for BPP4030 FT by TMHMM2.0 at aa 7-24" FT CDS 196207..196827 FT /transl_table=11 FT /locus_tag="BPP4031" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0698" FT /db_xref="InterPro:IPR005653" FT /db_xref="UniProtKB/TrEMBL:Q7W3K1" FT /protein_id="CAE39314.1" FT /translation="MTHLRLSLAPLRLCSILLLAAAGAAQAQAQSGQAAPAEEPSTLIL FT SDTLHYDDIKRQSIFTGNVILTRGLMTLTSDKLEVNEDAAGNQFGVATADKGKIVTIRQ FT GRPETFELIEGKGLRAEYESSKSQFDLIGQAIVTRYICGKPFDTIRGDRVRYNEKTGIY FT QAQGGPNSSAAGGRVRSLAEPRAKADAAIAECRAKKQAPKKPQ" FT misc_feature 196207..196287 FT /note="Signal peptide predicted for BPP4031 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.604 between residues 27 and 28" FT CDS 196859..197650 FT /transl_table=11 FT /locus_tag="BPP4032" FT /product="ABC transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP0697" FT /db_xref="GOA:Q7W3K0" FT /db_xref="HSSP:1G6H" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W3K0" FT /protein_id="CAE39315.1" FT /translation="MTDSHATLSTATAAGAAASSLRATGLRKTYNGRTVVQDVSLSVVS FT GEVVGLLGPNGAGKTTSFYMIVGLVPADSGRIEIDGSNITSMPIHKRARMGLSYLPQDA FT SVFRRLTVEQNIRAVLELQLGPNGKPLPEARIRDNLEALLEELQIGHIRANTAISLSGG FT ERRRVEIARALATSPRFILLDEPFAGVDPIAVIEIQRIVRFLKGRGIGVLITDHNVRET FT LGICDRAYIISEGKVLTDGHPDEIVGDPAVRRVYLGEHFRM" FT misc_feature 196859..196924 FT /note="Signal peptide predicted for BPP4032 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.982) with cleavage site FT probability 0.508 between residues 22 and 23" FT misc_feature 196994..197563 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 2.6e-60" FT misc_feature 197015..197038 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 197336..197380 FT /note="PS00211 ABC transporters family signature." FT CDS 197886..198224 FT /transl_table=11 FT /gene="rpoN" FT /locus_tag="BPP4033" FT /product="probable sigma(54) modulation protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0696" FT /db_xref="GOA:Q7W3J9" FT /db_xref="InterPro:IPR003489" FT /db_xref="UniProtKB/TrEMBL:Q7W3J9" FT /protein_id="CAE39316.1" FT /translation="MNLSICGRHLDVTPAIREYVMNKLARVLRHFDHVIDTQVMLSVEP FT LRHKAEITMRLRGKDIHCEAVDENLYAAIDLLVDKIDRQVIKHKDKVQSHSAESAKRQA FT AALAAQQP" FT misc_feature 197889..198170 FT /note="HMMPfam hit to PF02482, Sigma 54 modulation protein FT / S30EA ribosomal protein, score 7.5e-42" FT CDS 198492..198956 FT /transl_table=11 FT /gene="rpoP" FT /gene_synonym="ptsN" FT /locus_tag="BPP4034" FT /product="nitrogen regulatory IIA protein" FT /EC_number="2.7.1.69" FT /note="ortholog of Bordetella pertussis (BX470248) BP0694" FT /db_xref="GOA:Q7W3J8" FT /db_xref="HSSP:1A6J" FT /db_xref="InterPro:IPR002178" FT /db_xref="UniProtKB/TrEMBL:Q7W3J8" FT /protein_id="CAE39317.1" FT /translation="MTRMNHLSRILPAGNVVLDMLATSKKRAFEQAGLLFENHHGLARS FT VVFDSLFSRERLGSTALGQGVAVPHGRVKGLDQALAAFIRLAQPIPFDAPDGQPVSMLL FT CLLVPEAATQQHLDILAELAQLMSNKPLREALASETDPAAVHRMLTTGQL" FT misc_feature 198516..198947 FT /note="HMMPfam hit to PF00359, FT Phosphoenolpyruvate-dependent sugar phosphotransferase FT system, EIIA 2, score 8.4e-11" FT misc_feature 198654..198704 FT /note="PS00372 PTS EIIA domains phosphorylation site FT signature 2." FT CDS 198975..199901 FT /transl_table=11 FT /locus_tag="BPP4035" FT /product="Hpr serine kinase/phosphatase" FT /EC_number="2.7.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0693" FT /db_xref="GOA:Q7U370" FT /db_xref="InterPro:IPR011126" FT /db_xref="UniProtKB/Swiss-Prot:Q7U370" FT /protein_id="CAE39318.1" FT /translation="MLTVQELVDDNADKIPFSWIAGHDAADRAIPDDGMAAADLVGHLN FT LIHPSRIQVFGQEELAYYTRFDLRRRMHHMDELLIGGVPAILLADGLTPPQDLIDQCAQ FT HQVPLLSTPVAAAQLIDLLRIYLGKKLAPTTTVHGVFLDVLGLGVLITGESGLGKSELA FT LELISRGHGLVADDAVELSRTAPGVIEGHCPQLLQNLLEVRGLGLLDIRTIFGETSVRR FT KMRLKLIVHLVRATAQDKFERLPLQDITQDMLGLPIRKVMLQVAAGRNLAVLVEAAVRN FT TILKLRGIDTLGEFMERQAMAILQSSK" FT misc_feature 198978..199895 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02603, Hpr Serine kinase, score FT 3.3e-55" FT misc_feature 199431..199454 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(200005..201288) FT /transl_table=11 FT /locus_tag="BPP4036" FT /product="cytochrome C" FT /note="ortholog of Bordetella pertussis (BX470248) BP0692" FT /db_xref="GOA:Q7W3J7" FT /db_xref="HSSP:1C52" FT /db_xref="InterPro:IPR014353" FT /db_xref="UniProtKB/TrEMBL:Q7W3J7" FT /protein_id="CAE39319.1" FT /translation="MKIIKRVLVVAILALLAAVATLYWLGTRDHVPAGPQAAPATGSAD FT ELVEQGRYLARAGNCMACHTARGGQAYAGGTPIPTPFGTLYGPNITPDAETGIGGWSAD FT DFWQALHNGKGPGGRLLYPAFPYTEYTRMTRADADALYAFLRTVEPVRQASRPHELASP FT YDQRLLLAAWRALYFEPGGPQADPGQSLQWNRGRYLTEGLGHCAACHTPRNSLGATRAA FT EALGGGMIDGLGWYAPSLTGQPGTGLGDWSAQDIAALLTTGIAPHSTVAGPMAEVVLGS FT TQYLSGDDALAIGTYLKSLPAAPPPARRGAPSATVMELGGKLYGQHCAQCHQADGKGSF FT PAWPALAGNPSVIAAEPANVIRMVLDGGFAPATAANPRPHGMPPFAQALPDNDIAMLVS FT YVRNSWGNQAGAVTPLDVKRTRESGAGR" FT misc_feature complement(200074..200340) FT /note="HMMPfam hit to PF00034, Cytochrome c, score 0.0057" FT misc_feature complement(200290..200307) FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature complement(200656..200673) FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature complement(201094..201111) FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature complement(201211..201267) FT /note="1 probable transmembrane helix predicted for BPP4036 FT by TMHMM2.0 at aa 7-26" FT misc_feature complement(201229..201288) FT /note="Signal peptide predicted for BPP4036 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.305 between residues 20 and 21" FT CDS complement(201299..202051) FT /transl_table=11 FT /locus_tag="BPP4037" FT /product="probable cytochrome C" FT /note="ortholog of Bordetella pertussis (BX470248) BP0691" FT /db_xref="GOA:Q7W3J6" FT /db_xref="HSSP:1M70" FT /db_xref="InterPro:IPR009056" FT /db_xref="UniProtKB/TrEMBL:Q7W3J6" FT /protein_id="CAE39320.1" FT /translation="MLAFKSDLRIAMRAWRAACGVLAAAAGMLAMSQAVAQGEAALRPD FT TMAARVAACTACHGEQGRAGPDGYYPRLAGKPQDYLYHQLLNFRDARRQYPPMAHLLNG FT LPDAYLREMAAYFAGQDVPYPPPARVEASAALVERGRLLVREGDPARAIPSCASCHGAS FT LAGVAPAIPGLRGLPRDYLVAQIGSWQNGLRRAAEPDCMAQVSLKLTPEDIGAVSAWLA FT GQPVGHPYTPQPAGSLTLPLECGSQAGH" FT misc_feature complement(201377..201613) FT /note="HMMPfam hit to PF00034, Cytochrome c, score 0.031" FT misc_feature complement(201569..201586) FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature complement(201875..201892) FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT CDS 202223..203095 FT /transl_table=11 FT /locus_tag="BPP4038" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0690" FT /db_xref="GOA:Q7W3J5" FT /db_xref="InterPro:IPR005337" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3J5" FT /protein_id="CAE39321.1" FT /translation="MLRVVLITGISGSGKSVALRLLEDAGFTCIDNLPVRFLAEFIANA FT RDDAMERVAVAIDVRSPGELAELPDVITASRAMGTSLSVIFLDANTDTLVQRYSESRRR FT HPLTDRLARGGKTPSLAECIALERELMAPLRDQEHVIDTSDLTPGQLRAWIRDLIQADR FT PPLVLTFESFAYKRGVPSDADLMFDVRCLPNPYYDRTLRPLTGRDEPVATWLGGFDIVT FT QMIDDIAAFIRRWLPQYTQDTRNYLTVAIGCTGGQHRSVYVVEQLARRFSDHDPLLVRH FT RTQLPDDPA" FT misc_feature 202226..203083 FT /note="HMMPfam hit to PF03668, Uncharacterised P-loop FT ATPase protein family (UPF0042), score 8.2e-89" FT misc_feature 202247..202270 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 203092..204042 FT /transl_table=11 FT /locus_tag="BPP4039" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0689" FT /db_xref="InterPro:IPR007730" FT /db_xref="UniProtKB/TrEMBL:Q7W3J4" FT /protein_id="CAE39322.1" FT /translation="MIRSRPLALLSTLLLALAIAGCSTPGKKRGGYYKDDGPDANPPSN FT LDNVPDATPRLEPLASGPNRPYVVFGKRYVPDTSERPFRQQGLASWYGKKFHGNSTSNG FT ESYDMYAMTAAHPTMPIPSYARVTSKINGRTVIVRVNDRGPFHSDRIMDLSYVAAHKLG FT IIGPGSGPVTVERILPAEILAMNGGAAAPRPGPASATGPLPVAAPSAAAAVELHPATQL FT ASNAPTPPRPATGAGSGIYLQLGAFSQPANAESLVSRINGQLDPASGIPPAVVEQANNL FT YRVRIGPYATREAALGAVQPVADRTGILPSLSATP" FT misc_feature 203092..203154 FT /note="Signal peptide predicted for BPP4039 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.564 between residues 21 and 22" FT misc_feature 203125..203157 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 203341..203622 FT /note="HMMPfam hit to PF03330, Rare lipoprotein A (RlpA) FT family, score 4.4e-52" FT CDS complement(204039..204611) FT /transl_table=11 FT /gene="ogt" FT /locus_tag="BPP4040" FT /product="methylated-DNA--protein-cysteine FT methyltransferase" FT /EC_number="2.1.1.63" FT /note="ortholog of Bordetella pertussis (BX470248) BP0391" FT /db_xref="GOA:Q7W3J3" FT /db_xref="HSSP:1EH6" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W3J3" FT /protein_id="CAE39323.1" FT /translation="MNPPSAQATDILYCDTDTPLGPMRLAARGQALCGAWFVDQRDCPA FT AAGWTPDAAHPALRQAAAELEQWFAGRRRAFEVDMQPEGTPFQRQVWQALLELPFGATI FT SYGELARRVGRPKAARAVAGAVGRNPISILIPCHRIIGHDTSLTGFGGGLPRKQALLAH FT EGHRYLSRAARARRVSTTQMELPFGAA" FT misc_feature complement(204096..204362) FT /note="HMMPfam hit to PF01035, 6-O-methylguanine DNA FT methyltransferase, DNA binding domain, score 8.4e-48" FT misc_feature complement(204189..204209) FT /note="PS00374 Methylated-DNA--protein-cysteine FT methyltransferase active site." FT CDS complement(204608..205546) FT /transl_table=11 FT /locus_tag="BPP4041" FT /product="putative tetrapyrrole methylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0390" FT /db_xref="GOA:Q7W3J2" FT /db_xref="InterPro:IPR018063" FT /db_xref="UniProtKB/TrEMBL:Q7W3J2" FT /protein_id="CAE39324.1" FT /translation="MNQDVLSPAPGDAWSRVADRVAAQHWPAATLYVIATPIGNLGDLG FT LRAWQALVRADVIAAEDTRASRTLLDAWGVSTPLMAAHRHNEASAAQAICERLAQGQRV FT ALVSDAGAPAVSDPGARIVRVVREAGYAVVPVPGPSAVIAALMGSGATSDENPAFAFAG FT FPPAKAVARQRWLRQWCALPAPVVMFESPHRLAATLADLREAGGPARLLTVARELTKRF FT EEIATMPLGEAADWLAADAHRGQGEFVLIVHQAPGAQDDEADPADPRTDALLDALLESL FT SVRDAARVAAKVTGLARDVLYARALARKEQP" FT misc_feature complement(204845..205459) FT /note="HMMPfam hit to PF00590, Tetrapyrrole FT (Corrin/Porphyrin) Methylases, score 1.3e-29" FT misc_feature complement(205190..205225) FT /note="PS01296 Uncharacterized protein family UPF0011 FT signature." FT CDS 205613..206146 FT /transl_table=11 FT /locus_tag="BPP4042" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0389" FT /db_xref="GOA:Q7W3J1" FT /db_xref="InterPro:IPR003509" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3J1" FT /protein_id="CAE39325.1" FT /translation="MTDTATRLAFARAAQAQRRLHRRPPASPRASPGARDGGSPTQRCG FT QAYESAALRWLARQGLRPLARNLRCRAGEIDLAMRDGEVLVLVEVRARAHAGYGGAAAS FT IGASKQGRLARAAALLLPVLLRRHWPGAPPPVRFDVVAFEAGRPHWLRGAFWLAEHAPA FT QGRRGQDAQGWRVR" FT misc_feature 205751..206044 FT /note="HMMPfam hit to PF02021, Uncharacterised protein FT family UPF0102, score 1.1e-27" FT CDS 206146..206748 FT /transl_table=11 FT /locus_tag="BPP4043" FT /product="probable phosphosugar isomerase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0388" FT /db_xref="GOA:Q7W3J0" FT /db_xref="InterPro:IPR001347" FT /db_xref="UniProtKB/TrEMBL:Q7W3J0" FT /protein_id="CAE39326.1" FT /translation="MRAMDMTSRMTSHFRDAMALCEQSADALAAPLAAAVDLLFAALAN FT NGRILACGNGGSAADAQHFIAELVGRFERERLPLAGIALNTDTSIMTAVGNDYGFDEIF FT ERQVHALGQPGDVLVAISTSGNSPNVVRAMETAREREMHVIALTGKGGGVMGELITPHD FT VHLCVPHDRTMRIQEVHIILLHALCDGIDALLLGDTE" FT misc_feature 206263..206739 FT /note="HMMPfam hit to PF01380, SIS domain, score 6.7e-26" FT CDS 206745..207488 FT /transl_table=11 FT /locus_tag="BPP4044" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0387" FT /db_xref="InterPro:IPR014004" FT /db_xref="UniProtKB/TrEMBL:Q7W3I9" FT /protein_id="CAE39327.1" FT /translation="MMPDAKTAARPLLLAAALSAAALTLSACAPLVIGGAAATTAVVVT FT DRRTSGVQLEDQNIAFKAESQIAQKLGNTARVNAMVYGGHVLLTGDAPTEEAKAQATAI FT AQSIENVKAVTNQLTVGPAADFSTRSNDTWLTSKVKTALINTKYVPSGTISVTTSRGVV FT YLMGKVTQAEGDYAANAAAGVGGVARVVKLFETISREEAIRLSGSGTKSGEGSSDGTAA FT QKAPIESGATPAGSGSNGVEAIPIK" FT misc_feature 206745..206858 FT /note="Signal peptide predicted for BPP4044 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.551 between residues 38 and 39" FT misc_feature 206778..206846 FT /note="1 probable transmembrane helix predicted for BPP4044 FT by TMHMM2.0 at aa 12-34" FT misc_feature 206796..206828 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 207485..207976 FT /transl_table=11 FT /locus_tag="BPP4045" FT /product="putative thioredoxin" FT /note="ortholog of Bordetella pertussis (BX470248) BP0386" FT /db_xref="GOA:Q7W3I8" FT /db_xref="InterPro:IPR017936" FT /db_xref="UniProtKB/TrEMBL:Q7W3I8" FT /protein_id="CAE39328.1" FT /translation="MKKIALVLIIAVAAGIGGWFMWRPAQTAPDVAFTTLEGQKITMQD FT LRGKVVLVKFWATSCVTCVKQMPDNIANYNQYHPQGYETIAVAMNYDPPNYVLNFAQTR FT KLPFPVALDTSGELAQAFGNVRLTPTAFLIDKQGQIIKRYLGEYDKAEFQATVQKALAG FT " FT misc_feature 207485..207565 FT /note="Signal peptide predicted for BPP4045 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.921 between residues 27 and 28" FT misc_feature 207497..207550 FT /note="1 probable transmembrane helix predicted for BPP4045 FT by TMHMM2.0 at aa 5-22" FT CDS complement(208072..208860) FT /transl_table=11 FT /locus_tag="BPP4046" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0385" FT /db_xref="InterPro:IPR004478" FT /db_xref="UniProtKB/TrEMBL:Q7W3I7" FT /protein_id="CAE39329.1" FT /translation="MRMNFVRSALLASAFLLAGGAAQAEKLVVGATQVPHAEILEVVKL FT ALAKEGVELDIKVFTDYVQPNLQLADKQLDANFFQHQPYLDTFNKDRKTNLVSVGLVHV FT EPFGGYSKKIKSLAELKDGATIAIPNDPSNSGRALLLLQKQGLLKLKDPSNIVATPIDI FT AENPKKLKFRELEAAMLPRSLDDLDLALINTNYALEAGLVPTRDALFIEGADSPYANLV FT AARPDNKDAPAVKKLVNALHSEAVRKFIIEKYKGAVVPAF" FT misc_feature complement(208078..208785) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03180, NLPA lipoprotein, score FT 1.5e-149" FT misc_feature complement(208789..208860) FT /note="Signal peptide predicted for BPP4046 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.911 between residues 24 and 25" FT CDS 208990..210024 FT /transl_table=11 FT /gene="argB" FT /locus_tag="BPP4047" FT /product="acetylglutamate kinase" FT /EC_number="2.7.2.8" FT /note="ortholog of Bordetella pertussis (BX470248) BP0383" FT /db_xref="GOA:Q7W3I6" FT /db_xref="InterPro:IPR001057" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3I6" FT /protein_id="CAE39330.1" FT /translation="MDMGWPHKAAANTTIGRRLGAALRGPAPGCPFILLLYSVRIFVAM FT TDTPDPAAVLSPAVKAAVLSEALPYIRRFHGKTIVVKYGGNAMTEERLQRSFAHDVVLL FT KLVGLNPVVVHGGGPQIDDALRRIGKQGTFVQGIRVTDAETMEVVEWVLGGQVQQDIVM FT MINEVGGKAVGLTGKDGMLIQATKKLMVNKDDPSQPLDIGFVGDITRVEPAVVKALQDD FT QFIPVISPIGYGEDGTAYNINADVVAGKMAEVLGAEKLLMMTNTPGVLDKGGKLLRSLS FT AQTIDELFADGTISGGMLPKISSSLDAAKNGVNSVHIVDGRVPHCLLLEILTDQGVGTM FT ISSH" FT misc_feature 209218..209949 FT /note="HMMPfam hit to PF00696, Amino acid kinase family, FT score 1.6e-45" FT CDS 210021..210770 FT /transl_table=11 FT /locus_tag="BPP4048" FT /product="putative hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0382" FT /db_xref="GOA:Q7W3I5" FT /db_xref="InterPro:IPR010237" FT /db_xref="UniProtKB/TrEMBL:Q7W3I5" FT /protein_id="CAE39331.1" FT /translation="MMQARRYLLRPAARLRRSRRIATAAPERLWLFDLDNTLHDTSHAI FT FPLIDRGMTEAVAETLAVDEATANRLRAEYWRRYGATVIGLVRHHGVDADAFLHRSHNF FT EVAPLVRAETALADKLRRLPGRKVLLTNAPLHYARAVLRHLGLLRQFDSIWAIEQMRMH FT GQFRPKPSDALLRYVLAREGVPAARAVLIEDTLDNLRSARRVGLRTVHVFHPGTPFARG FT HRQRPGYVDLRVNSVSDLLLRRRPLRG" FT misc_feature 210099..210665 FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase, score 3.7e-12" FT CDS join(210820..211290,211293..211394) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP4049" FT /product="putative TetR-family transcriptional regulator FT (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0381" FT /db_xref="PSEUDO:CAE39332.1" FT misc_feature 210853..210993 FT /note="HMMPfam hit to PF00440, Bacterial regulatory FT proteins, tetR family, score 9.6e-07" FT CDS 211607..213100 FT /transl_table=11 FT /locus_tag="BPP4050" FT /product="putative Sodium:sulfate symportert" FT /note="ortholog of Bordetella pertussis (BX470248) BP0380" FT /db_xref="GOA:Q7U369" FT /db_xref="InterPro:IPR001898" FT /db_xref="UniProtKB/TrEMBL:Q7U369" FT /protein_id="CAE39333.1" FT /translation="MTAPAAVPAPQSPPKVKIPIGLIAGIIAMVVVLLLPLPAELPPAG FT HRMLAILAFAVVVWITEAVSYEASAIMITTLMAFLLGTAPNVKNPDVLYGTSAAISMAL FT TGFSNSALALVTGALFIAAAMTFTGLDKRIALVTLARVGTSTRRILLGAIAVTIVLSLV FT VPSATARSAAVVPIMLGVIAAFGVDKRSNIAAGIMIIVAQATSIWNVGIQTAAAQNLLT FT VGFMDKMLGERVAWSDWLIAGVPWSLLMSAVLIFVVLRLLPPESDAIAGGKEAVEASLR FT ELGPMTSAQKRLMLVSIMLLLFWSTKGKLHKFDTTSTTYFGLVLLMLPRFGVMTWKDVQ FT TRIPWGTVIVFGVGISLGTALLTTQAGQWLGAQVVAHTGLDHLGPLGIFAILSAFLILI FT HLGFASATALTSAMLPILIAVLQTLPGDFNRLGMTMLLGFVVSYGFILPINAPQNMMAL FT GTETFTAKQFAKVGIVLTIVGYLLMLLMSVTYWRWLGWM" FT misc_feature 211643..213094 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00939, Sodium:sulfate symporter FT transmembrane region, score 1.2e-157" FT misc_feature join(211664..211732,211751..211819,211937..211996, FT 212057..212125,212183..212242,212321..212389, FT 212552..212605,212639..212707,212750..212818, FT 212831..212884,212897..212956,213017..213085) FT /note="12 probable transmembrane helices predicted for FT BPP4050 by TMHMM2.0 at aa 20-42, 49-71, 111-130, 151-173, FT 193-212, 239-261, 316-333, 345-367, 382-404, 409-426, FT 431-450 and 471-493" FT CDS 213111..214166 FT /transl_table=11 FT /gene="ldh" FT /locus_tag="BPP4051" FT /product="putative L-lactate dehydrogenase" FT /EC_number="1.1.1.27" FT /note="ortholog of Bordetella pertussis (BX470248) BP0379" FT /db_xref="GOA:Q7W3I4" FT /db_xref="InterPro:IPR003767" FT /db_xref="UniProtKB/TrEMBL:Q7W3I4" FT /protein_id="CAE39334.1" FT /translation="MKLSIAQAIAFGQRLLAAQGVPDDIARDVAEHLVESDRVGYTSHG FT LSILPNYRRVLAEGFVKADGRARLLNDRGAMLAFDGDNGFGQHVGKAVMQQAIERARQY FT GQCIVTLRRTHHLGRMGYYGEMAAEAGLILLAFTNVVNRPPTVAPYGGAQACLTTNPLC FT FAGPLPGGRPPFLVDMATSSIAVNKARVLAARGEPAPDGALIDAQGNPTNDPNALFADP FT PGALLPFGGHKGYAMGLVAELLAGVLSGGGTIQPEHPRNGVATNNMFAILLDPQVDFNA FT DWRTQEVGAFIDYLHACPPQPGVDRVQYPGEYEAMNRARHAEAIEFEGAIWDSLAKLAQ FT DLGAADALPRA" FT misc_feature 213111..214124 FT /note="HMMPfam hit to PF02615, Malate/L-lactate FT dehydrogenase, score 6.2e-76" FT CDS complement(214192..215328) FT /transl_table=11 FT /gene="mrdB" FT /gene_synonym="rodA" FT /locus_tag="BPP4052" FT /product="rod shape-determining protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0378" FT /db_xref="GOA:Q7W3I3" FT /db_xref="InterPro:IPR018365" FT /db_xref="UniProtKB/TrEMBL:Q7W3I3" FT /protein_id="CAE39335.1" FT /translation="MKRLGLILLRVFTAFDWPLLLILILFTLLGLTVMHSAVGSTDWRF FT AEQSRNFLIAFAAMWAMALVPPNTLMKLALPFYVLGVILLLGVEFFGETSKGATRWLNL FT GVTRIQPSEMMKIAVPMMLAWYFQRHDGAVRIRDFFVAAAMLAAPFVLIVLQPDLGTAL FT LVFGAGFFVIYFAGLSFKLLVPCLLAGIIAIGTLIYYEDQLCEPEVDWVVLHDYQKHRV FT CTLLNPSSDPLGKGFHTIQSMIAVGSGGLYGKGYMQGTQTHLDFIPERTTDFIFAVYAE FT EFGLYGGVALLVLYGLFMARGLAIASRASSQFGRLLAGAITMMMFIYVFVNVGMVTGIL FT PVVGVPLPFMSYGGTALLTMGIACGILMSISRRRPAPA" FT misc_feature complement(214201..215283) FT /note="HMMPfam hit to PF01098, Cell cycle protein, score FT 2.3e-125" FT misc_feature complement(join(214216..214281,214312..214377, FT 214414..214479,214729..214779,214795..214851, FT 214864..214929,215056..215121,215242..215307)) FT /note="8 probable transmembrane helices predicted for FT BPP4052 by TMHMM2.0 at aa 7-29, 69-91, 133-155, 159-178, FT 183-200, 283-305, 317-339 and 349-371" FT misc_feature complement(214261..214335) FT /note="PS00428 Cell cycle proteins ftsW / rodA / spoVE FT signature." FT misc_feature complement(215212..215328) FT /note="Signal peptide predicted for BPP4052 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.985) with cleavage site FT probability 0.961 between residues 39 and 40" FT CDS complement(215325..217277) FT /transl_table=11 FT /gene="mrdA" FT /gene_synonym="pbpA" FT /locus_tag="BPP4053" FT /product="penicillin-binding protein 2" FT /note="ortholog of Bordetella pertussis (BX470248) BP0377" FT /db_xref="GOA:Q7W3I2" FT /db_xref="InterPro:IPR001460" FT /db_xref="UniProtKB/TrEMBL:Q7W3I2" FT /protein_id="CAE39336.1" FT /translation="MFEFKKTGQQQKQRFRLRAWVGGLFALACFGVLAGRFWYLQVDRY FT EGFSERADRNRIAVVPIPPRRGEILDRNGEVLARNYRTYTLEVVPAQAGNLDQLFDRLA FT RVVYISPSDQRRFKRRVGESSRYASLQLRNNLNDTEAAWFSAHSFEFPGVELRARWVRE FT YPQGEAAAHVVGFIGRIAENDIEELDKAGQLGNYRGTDVIGKKGIEKTWEAALHGRTGL FT EEVEVTAGGRPMRTLRRIDPVPGSDIMLSIDLELQKLAEQAFEGRRGALVALDPDTGEV FT LAFVSQPSFDPNLFVDGIDVENWRRLNESPDHPLINRPLYGTYPIGSTYKPFVALAALE FT LGKRRATDRMPDPGYFEFGGQKFRNAGGAAYGMTDMHRAIVVSSDTYFYSLGPEIGVNA FT LHDFSKQFGFGQITGIDLEGEKAGVLPSTEWKRKAYKDRDRQRWYAGETISVAVGQGYN FT SFTLLQLAQATSTLANSGLYRRPHLVHAIRDSRSGSVNPTEIAPDYRIPLKQENVDVIK FT RAMADVVRAGTARRAFAGAPYQAAGKTGTAQVFSLRGGQYRASAIDERLRDHALFMGFA FT PVEQPRIAVALIVENAGWGASAAAPIARTLFDNWLGRADAPSVVRAGAKPVAAEPEAAT FT LELGATDGPMQERRQ" FT misc_feature complement(215451..216518) FT /note="HMMPfam hit to PF00905, Penicillin binding protein FT transpeptidase domain, score 4.3e-73" FT misc_feature complement(216261..216308) FT /note="PS00146 Beta-lactamase class-A active site." FT misc_feature complement(216564..217097) FT /note="HMMPfam hit to PF03717, Penicillin-binding Protein FT dimerisation domain, score 2.5e-42" FT misc_feature complement(217152..217217) FT /note="1 probable transmembrane helix predicted for BPP4053 FT by TMHMM2.0 at aa 20-42" FT misc_feature complement(217176..217277) FT /note="Signal peptide predicted for BPP4053 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.984) with cleavage site FT probability 0.979 between residues 34 and 35" FT misc_feature complement(217191..217223) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(217291..217854) FT /transl_table=11 FT /gene="mreD" FT /locus_tag="BPP4054" FT /product="rod shape-determining protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0376" FT /db_xref="GOA:Q7W3I1" FT /db_xref="InterPro:IPR007227" FT /db_xref="UniProtKB/TrEMBL:Q7W3I1" FT /protein_id="CAE39337.1" FT /translation="MERTKVSVPVRRKLGTPSNVEPERLARPAHGVFVWGTVLLVWLLS FT LLPWRQWPGSPDVLVLVIAFWCVHEPRRVGLLTAFVFGLLLDVHDAGLLGGHALSYTLT FT AYGAIALHRRLQRFDLWSQAMHMLPVFFLAQLVTQIILAWLAGKWPGWQWAVSVGLTVA FT IWPLAGWVLHMPQRRYDDVESSAV" FT misc_feature complement(join(217339..217404,217417..217482, FT 217522..217578,217708..217758)) FT /note="4 probable transmembrane helices predicted for FT BPP4054 by TMHMM2.0 at aa 32-49, 92-111, 124-146 and FT 150-172" FT CDS complement(217841..218725) FT /transl_table=11 FT /gene="mreC" FT /locus_tag="BPP4055" FT /product="rod shape-determining protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0375" FT /db_xref="GOA:Q7W3I0" FT /db_xref="InterPro:IPR005223" FT /db_xref="UniProtKB/TrEMBL:Q7W3I0" FT /protein_id="CAE39338.1" FT /translation="MQRQATPPLFRRGPPAEVRLAVLVILALALLIVDSQLRVLEPVRR FT AVSVALYPFQRAVMAPRDLVQQVDEWINAASLIRSENEALQRQRIELAQVATHAAQLAA FT ENAQLRRLLGVTDTVAQSAVVVEVLYEPPNAFHQRLVFNKGAKSGLAPGMPVIDEGGVV FT GQIVRVTPMTAEAALVTDERVSIPVQVLRNGLRLIAFGANTPGVIEVRYLAANADIKVG FT DTIVTSGVGGLFPAGLPVAKVASVERDTASGFARALGEPLAHPERYRHFLVLQVDVDQA FT ESNRQEADVDGAD" FT CDS complement(218814..219857) FT /transl_table=11 FT /gene="mreB" FT /gene_synonym="envB" FT /gene_synonym="rodY" FT /locus_tag="BPP4056" FT /product="rod shape-determining protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0374" FT /db_xref="GOA:Q7W3H9" FT /db_xref="HSSP:1JCF" FT /db_xref="InterPro:IPR004753" FT /db_xref="UniProtKB/TrEMBL:Q7W3H9" FT /protein_id="CAE39339.1" FT /translation="MFGFLRSYFSSDMAIDLGTANTLIYVRGKGIVLDEPSVVAIRHEG FT GPNGKKIIQAVGHEAKQMLGRVPGNIEAIRPMKDGVIADFTVTEQMLKQFIRMVHPRNM FT LAPSPRIIVCVPCGSTQVERRAIRESALGAGASHVYLIEEPMAAAIGAGLAVSDASGSM FT VVDIGGGTTEVAVISLGGMVYKGSVRVGGDKFDEAIVNYIRRNYGMLIGEPTAELIKKE FT IGSAFPGSEVREIEVKGRNLAEGVPRSFTVSSNEILESLTDPLNQIVSAVKIALEQTPP FT ELGADITDKGIALTGGGALLRDLDRLLQEETGLPVVVADDPLTCVVRGCGEALEHLEKL FT GAIFIND" FT CDS 220031..220396 FT /transl_table=11 FT /gene="gatC" FT /locus_tag="BPP4057" FT /product="glutamyl-tRNA(GLN) amidotransferase subunit C" FT /EC_number="6.3.5.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0373" FT /db_xref="GOA:Q7W3H8" FT /db_xref="InterPro:IPR003837" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3H8" FT /protein_id="CAE39340.1" FT /translation="MHTARFPSSATPSIFFRYFMALNEQDVARIARLALIELPPDQRGR FT AQAELNGILHLIERLQAVDTQGVEPLAHPLSAHEDITLRLREDAVSEQATEARRAELLA FT NAPESADGLFLVPKVIE" FT misc_feature 220142..220378 FT /note="HMMPfam hit to PF02686, Glu-tRNAGln amidotransferase FT C subunit, score 4.7e-11" FT CDS 220399..221937 FT /transl_table=11 FT /gene="gatA" FT /locus_tag="BPP4058" FT /product="glutamyl-tRNA(GLN) amidotransferase subunit A" FT /EC_number="6.3.5.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0372" FT /db_xref="GOA:Q7W3H7" FT /db_xref="InterPro:IPR004412" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3H7" FT /protein_id="CAE39341.1" FT /translation="MTQSALHTEFGGIAALRDALARRQVSAVELAQSGLDAAQAASGLN FT AFLHIDPDLTLAQARAADAALAAGTAGPLAGIPIAHKDAFVTRGWRTTAGSKMLAGYAS FT PFDATVVERLAEAGAVSLGKLNCDEFAMGSGNENSAYGPVRNPWDTRAVPGGSSGGSAA FT AVAARLVAAATGTDTGGSVRQPAALCGVSGIKPTYGTVSRYGMIAFGSSLDQAGPLAPS FT SRDLLELLDVMTGFDPRDATSLQACDGQANESGRVRRGHDAAQAGYDAAGSQPLKGLRI FT GVPQEYFGAGLAPDVAAAVDAALAQFEQLGAVRVPVSLPRTELAIPAYYVIAPAEASSN FT LARYDGVRYGHRAAQYGDLNEMISRSRAEGFGDEVKRRILIGTYVLSHGYYDAYYLQAQ FT RLRRLIAQDFQRAFADQCDVIMGPVSPTVAKNIGDNRDDPTADWLADVYTLGVSLAGLP FT AMSVPCGFGGQDGRRPVGLQIIGNYFDEGRLLALADRYQQVTDWHQRAPVSQDA" FT misc_feature 220483..221868 FT /note="HMMPfam hit to PF01425, Amidase, score 2.4e-180" FT misc_feature 220861..220956 FT /note="PS00571 Amidases signature." FT CDS 221940..223394 FT /transl_table=11 FT /gene="gatB" FT /locus_tag="BPP4059" FT /product="glutamyl-tRNA(GLN) amidotransferase subunit B" FT /note="ortholog of Bordetella pertussis (BX470248) BP0371" FT /db_xref="GOA:Q7W3H6" FT /db_xref="InterPro:IPR017958" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3H6" FT /protein_id="CAE39342.1" FT /translation="MNWEIVIGLETHTQLSTDSKIFSGSSTRFGAAPNTQANAVDLALP FT GSLPVMNRGAAERAILFGLAVGGKVAPRSVFARKNYFYPDLPKGYQISQYELPVVEGGT FT LSFFVGEEEKTVNLTRAHLEEDAGKSLHDEFSLASGAPASGIDLNRAGTPLLEIVTEPE FT MRSAAEAVAYARALHSLVVWLGICDGNMQEGSFRCDANVSVRPVGQKEFGTRTEIKNVN FT SFRFLERAILFEARRQIELIEDGGTVVQETRLYDADRDETRSMRSKEDAHDYRYFPDPD FT LPPLVIGQDWVDAVRAGMPELPTAQRARFEADYGLPAYDAAQLTVSRAMADYFEAVARA FT LPAGQAKLAANWIMGEVAATLNREEKDIDAAPVSAAALATLINRIIDGTISNKIARDVF FT AAMWAGENGGDADAIIAARGLKQISDSGAIGAMIDEVLAANPAIVEEYRAGKQKAFNSL FT VGQIMKAAKGKANPQQVNELLKEKLG" FT misc_feature 221940..222674 FT /note="HMMPfam hit to PF02934, PET112 family, N terminal FT region, score 1.3e-141" FT misc_feature 222378..222425 FT /note="PS01234 PET112 family signature." FT misc_feature 222723..222929 FT /note="HMMPfam hit to PF01162, PET112 family, C terminal FT region, score 5.1e-31" FT misc_feature 222933..223388 FT /note="HMMPfam hit to PF02637, GatB/Yqey domain, score FT 1.3e-55" FT CDS complement(223478..224185) FT /transl_table=11 FT /gene="pyrE" FT /locus_tag="BPP4060" FT /product="orotate phosphoribosyltransferase" FT /EC_number="2.4.2.10" FT /note="ortholog of Bordetella pertussis (BX470248) BP0370" FT /db_xref="GOA:Q7W3H5" FT /db_xref="InterPro:IPR000836" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3H5" FT /protein_id="CAE39343.1" FT /translation="MAGFAISPIARMSASASTAADFVRFALDEGVLRFGSFKVKSGRIS FT PYFFNAGLFNSGRSVGALAGFYAQALVDSGVAFDMLFGPAYKGIPLATATSVALAGHAA FT MAGRDVPFAFNRKEAKDHGEGGTLVGAPLTGKVVIIDDVITAGTSVRESVEIIRAAGAE FT PAAVLIALDRMERAGPDDALSPHSAVQDVARTYGIPVVSIASLADIMTLLQDDAQFAEH FT RAAVQAYRSKYGV" FT misc_feature complement(223565..224050) FT /note="HMMPfam hit to PF00156, Phosphoribosyl transferase FT domain, score 9.8e-28" FT misc_feature complement(223739..223777) FT /note="PS00103 Purine/pyrimidine phosphoribosyl FT transferases signature." FT misc_feature complement(224129..224185) FT /note="Signal peptide predicted for BPP4060 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.961) with cleavage site FT probability 0.918 between residues 19 and 20" FT CDS 224290..225078 FT /transl_table=11 FT /locus_tag="BPP4061" FT /product="putative endonuclease" FT /note="ortholog of Bordetella pertussis (BX470248) BP0369" FT /db_xref="GOA:Q7W3H4" FT /db_xref="HSSP:1BIX" FT /db_xref="InterPro:IPR005135" FT /db_xref="UniProtKB/TrEMBL:Q7W3H4" FT /protein_id="CAE39344.1" FT /translation="MLRITSLNLNGIRSAFRKGLQPWMTAHNADVLCLQEIKVSHDDLT FT DELRHPPGYTGHFHHAEKKGYSGVGMYLRAGAERVVAGFDCEEFDAEGRILRADWKDLS FT VISAYLPSGSSGDERQQAKYRFLDQFGPWLDGLMAEHRKTGREFVICGDWNIAHKEIDL FT KNWKGNQKNSGFLPEERAWLTEVFDRRGFVDVFRKLDERADQYTWWSNRGQAWAKNVGW FT RIDYQIATPGIAERARATSIYKDERFSDHAPLTVDYDIAL" FT misc_feature 224293..225063 FT /note="HMMPfam hit to PF03372, FT Endonuclease/Exonuclease/phosphatase family, score 4.2e-46" FT misc_feature 224374..224403 FT /note="PS00726 AP endonucleases family 1 signature 1." FT CDS join(225451..226020,226019..226843) FT /pseudo FT /transl_table=11 FT /gene="gdhA" FT /locus_tag="BPP4062" FT /product="NADP-specific glutamate dehydrogenase FT (pseudogene)" FT /EC_number="1.4.1.4" FT /note="ortholog of Bordetella pertussis (BX470248) BP0368" FT /db_xref="PSEUDO:CAE39345.1" FT misc_feature join(225667..226020,226019..226057) FT /note="HMMPfam hit to PF02812, Glu/Leu/Phe/Val FT dehydrogenase, dimerisation domain, score 1.5e-69" FT misc_feature 225862..225903 FT /note="PS00074 Glu / Leu / Phe / Val dehydrogenases active FT site." FT misc_feature 226100..226834 FT /note="HMMPfam hit to PF00208, FT Glutamate/Leucine/Phenylalanine/Valine dehydrogenase, score FT 3e-118" FT CDS complement(226880..227518) FT /transl_table=11 FT /locus_tag="BPP4063" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0367" FT /db_xref="InterPro:IPR005115" FT /db_xref="UniProtKB/TrEMBL:Q7W3H3" FT /protein_id="CAE39346.1" FT /translation="MPPDPSVLLLYTLYLVAIVAEAMTAALAAGRRDMDWVGVCVIACV FT TALGGGSLRDVLLGHYPLSWVAHPEYLWMTAGAALLTALGARALRRLCSLFLLLDAIGL FT VAFTIIGCQVAQQMEMPLTIVLVSGMITGCAGGVLRDVLCNDIPLLFRSELYASVSAVT FT GGLYLAMYGQGVSASVSVPVALAVGLAFRLLALRFNWQMPKFVYRGDWH" FT misc_feature complement(join(226931..226996,227009..227074, FT 227102..227152,227168..227233,227255..227305, FT 227345..227410,227432..227488)) FT /note="7 probable transmembrane helices predicted for FT BPP4063 by TMHMM2.0 at aa 10-29, 36-58, 71-88, 95-117, FT 122-139, 148-170 and 174-196" FT misc_feature complement(226976..227233) FT /note="HMMPfam hit to PF03458, UPF0126 domain, score FT 1.6e-29" FT misc_feature complement(227234..227491) FT /note="HMMPfam hit to PF03458, UPF0126 domain, score FT 1.3e-25" FT CDS 227709..228575 FT /transl_table=11 FT /locus_tag="BPP4064" FT /product="putative universal stress protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0366" FT /db_xref="GOA:Q7W3H2" FT /db_xref="InterPro:IPR006015" FT /db_xref="UniProtKB/TrEMBL:Q7W3H2" FT /protein_id="CAE39347.1" FT /translation="MQAQTAPILLATDLSARSDRALDRALMLAAQAQTSLVALHIMEPT FT NAPLTTPVWRRLSADHKQLAERRLAEDLADAPVPTSAVVRSGETVPLIRETAEHFGCSL FT IVTGIARESTLSRLLLGTTVERLARQASQPVLVVKARPRKPYRDVVVATDFSEGSRQAL FT VAALRVAGDAPLTLFHAYDVPFGKDAPEDAVVRRFYNGAAQKARAFLDGTPELAGRPAP FT ELVLESGQPETLLSEYVFNRRCDLAVTGTHGLTGILRTAIGSVAEKLLEALPCDVLIVR FT QTGTAGD" FT misc_feature 227718..228125 FT /note="HMMPfam hit to PF00582, Universal stress protein FT family, score 1.5e-12" FT misc_feature 228141..228551 FT /note="HMMPfam hit to PF00582, Universal stress protein FT family, score 7.1e-06" FT CDS complement(228675..229589) FT /transl_table=11 FT /locus_tag="BPP4065" FT /product="LysR family regulatory protein" FT /note="Similar to Yersinia pestis putativellysr-family FT transcriptional regulatory protein YPO2497 SWALL:Q8ZDQ9 FT (EMBL:AJ414152) (313 aa) fasta scores: E(): 1.4e-67, 57.96% FT id in 295 aa, and to Escherichia coli hypothetical FT transcriptional regulator YeaT SWALL:YEAT_ECOLI FT (SWALL:P76250) (307 aa) fasta scores: E(): 3.3e-67, 57.28% FT id in 295 aa" FT /db_xref="GOA:Q7W3H1" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W3H1" FT /protein_id="CAE39348.1" FT /translation="MSNIPANEDLRVFLHVARLSSFAAAAEELRVSTAYVSKRLRVLEG FT VLGVRLLHRTTRRVSVTREGERVFLWAQRVLDNVDQLMQEVAATRAVPRGLLRVSCSFG FT FGRNVVGPMLSRLVERFPALQVRLEVFDRLVDVASEGFDLDVRVGDDIAPHLIARRLAD FT NHRLLCAAPDYLARRGTPRTPEELAGHDCLVIKERDHPFGVWTLRAGAENRTIKVTGPL FT SANNGEIAVRWAVDGRGIVLRSHWDVAPLLRDGLLVPLLAPWRQDANIWAVYPSRLENS FT AKVRVAVEFLQEEFRRFAAQAGG" FT misc_feature complement(228702..229322) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 2.4e-43" FT misc_feature complement(229392..229571) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 4e-15" FT CDS 229686..230777 FT /transl_table=11 FT /locus_tag="BPP4066" FT /product="tartrate dehydrogenase" FT /EC_number="1.1.1.93" FT /note="Similar to Pseudomonas putida tartrate dehydrogenase FT SWALL:TTUC_PSEPU (SWALL:Q51945) (364 aa) fasta scores: E(): FT 1e-100, 69.27% id in 358 aa, and to Ralstonia solanacearum FT probable tartrate dehydrogenase oxidoreductase protein FT RS02169 SWALL:Q8XPM6 (EMBL:AL646086) (361 aa) fasta scores: FT E(): 1.6e-117, 80.44% id in 358 aa" FT /db_xref="GOA:Q7W3H0" FT /db_xref="HSSP:1CNZ" FT /db_xref="InterPro:IPR019818" FT /db_xref="UniProtKB/TrEMBL:Q7W3H0" FT /protein_id="CAE39349.1" FT /translation="MSSPRTYRIAAIAGDGIGREVMPEGLRVVRAAARRFGLDLDIVTF FT DWAHCDYYREHGQMMPDDWKAQLAGMDAIYFGAVGWPATVPDHVSLWGSLLKFRREFDQ FT YINLRPVRLFEGVPCPLAGRQPGDIDYLVVRENTEGEYTSAGGVIYEGTEREIVIQESV FT YSRYGADRVLHYAYALADSRPRRRLTVATKSNGIAISMPWWDKRADAVGQQYPGVAVDK FT QHIDILSARFVLQPDRFDVVVASNLFGDILSDLGPATTGTIGLAPSANLNPERKFPSLF FT EPVHGSAPDIYGQNIANPVAMIWSGALMLDFLTEGAGAGRAAHDAIVAAIEQVLAHGPR FT TRDLGGTASTDAMGEAIAARLAA" FT misc_feature 229749..230756 FT /note="HMMPfam hit to PF00180, Isocitrate/isopropylmalate FT dehydrogenase, score 5.9e-71" FT misc_feature 230421..230480 FT /note="PS00470 Isocitrate and isopropylmalate FT dehydrogenases signature." FT CDS complement(join(230820..231233,231232..232209)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP4067" FT /product="putative exported protein (pseudogene)" FT /note="Poor database matches. N-terminus is similar to the FT N-terminal region of Methanosarcina acetivorans surface FT antigen gene MA1591 SWALL:AAM05004 (EMBL:AE010830) (443 aa) FT fasta scores: E(): 1.7e-14, 27.24% id in 356 aa, and FT Clostridium acetobutylicum predicted protein of FT beta-propeller fold CAC2535 SWALL:Q97G36 (EMBL:AE007752) FT (352 aa) fasta scores: E(): 5.7e-10, 27.38% id in 314 aa" FT /db_xref="PSEUDO:CAE39350.1" FT misc_feature complement(231475..231510) FT /note="PS00136 Serine proteases, subtilase family, aspartic FT acid active site." FT misc_feature complement(232144..232209) FT /note="Signal peptide predicted for BPP4067 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.781 between residues 22 and 23" FT CDS complement(232282..232716) FT /transl_table=11 FT /locus_tag="BPP4068" FT /product="putative exported protein" FT /note="Poor database matches. Similar to Rhizobium meliloti FT hypothetical signal peptide protein SMC00921 SWALL:Q92KL7 FT (EMBL:AL591784) (128 aa) fasta scores: E(): 8.1e-07, 37.6% FT id in 125 aa" FT /db_xref="InterPro:IPR005183" FT /db_xref="UniProtKB/TrEMBL:Q7W3G9" FT /protein_id="CAE39351.1" FT /translation="MKGPFHAGAGRSVAALLLCLAGGYASAHGGHHGADPSAPAAGAAK FT APPVFVASTAKPFSALMDDAMAVMDEGMLRAPMNGQSNHDFMTMMMPHHQGAVDMAKAV FT LLYTEDPEVRNLALGIITEQQNEIRVMQAWLDRHAVAAGK" FT misc_feature complement(232312..232470) FT /note="HMMPfam hit to PF03713, Domain of unknown function, FT score 1.5e-20" FT misc_feature complement(232636..232716) FT /note="Signal peptide predicted for BPP4068 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.974) with cleavage site FT probability 0.940 between residues 27 and 28" FT CDS join(232904..233434,233438..233575) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP4069" FT /product="response regulator protein (pseudogene)" FT /note="Two-component regulatory system family, response FT regulator protein. Similar to Alcaligenes eutrophus FT transcriptional activator protein CzcR SWALL:CZCR_ALCEU FT (SWALL:Q44006) (225 aa) fasta scores: E(): 1.1e-50, 62.1% FT id in 219 aa, and to Pseudomonas aeruginosa two-component FT response regulator PA4885 SWALL:Q9HUS8 (EMBL:AE004901) (229 FT aa) fasta scores: E(): 9.2e-61, 72.64% id in 223 aa. FT Contains a nonsense mutation (amber) after codon 177" FT /db_xref="PSEUDO:CAE39352.1" FT misc_feature 232904..233260 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain, score 1.6e-32" FT CDS join(233572..234648,234652..234987) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP4071" FT /product="sensor kinase protein (pseudogene)" FT /note="Two-component regulatory system family, sensor FT kinase protein. Similar to Alcaligenes eutrophus sensor FT protein CzcS SWALL:CZCS_ALCEU (SWALL:Q44007) (475 aa) fasta FT scores: E(): 4.6e-40, 34.47% id in 467 aa, and to FT Pseudomonas aeruginosa probable two-component sensor PA4886 FT SWALL:Q9HUS7 (EMBL:AE004901) (463 aa) fasta scores: E(): FT 1.4e-73, 47.81% id in 458 aa. Contains a nonsense mutation FT (opal) after codon 359" FT /db_xref="PSEUDO:CAE39353.1" FT misc_feature join(233614..233673,234073..234141) FT /note="2 probable transmembrane helices predicted for FT BPP4071 by TMHMM2.0 at aa 15-34 and 168-190" FT misc_feature 234085..234297 FT /note="HMMPfam hit to PF00672, HAMP domain, score 9.5e-10" FT misc_feature 234307..234507 FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain, score 5.8e-16" FT misc_feature 234673..234969 FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 1.3e-15" FT CDS complement(234952..235944) FT /transl_table=11 FT /locus_tag="BPP4073" FT /product="LysR family regulatory protein" FT /note="Similar to Alcaligenes eutrophus rubisco operon FT transcriptional regulator CfxR SWALL:CFXR_ALCEU FT (SWALL:P42722) (317 aa) fasta scores: E(): 1.2e-05, 25.44% FT id in 283 aa, and to Agrobacterium tumefaciens FT transcriptional regulator, LysR family AGR_C_4564 FT SWALL:AAL43499 (EMBL:AE009197) (306 aa) fasta scores: E(): FT 9.8e-27, 34.08% id in 311 aa" FT /db_xref="GOA:Q7W3G8" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W3G8" FT /protein_id="CAE39354.1" FT /translation="MHNGSAHKKGHAMKQLWIEDFLTLVDAGTFSRAAALRNVTQPAFS FT RRIQQLEGWLGLELIDRRSPTLRLTPVAQRHIPGFRMLLRDMAQLRTRMQSEQNGLARL FT VLATQHSLTMSRLPALLTLLGEQDSPRIEFSVRSENRDDCVALFLRGEADLLLCMEERN FT DALYRLVPAHLRLPVGQEVLVPLSAPARNGRALHAPRRGKPLSLLAFPPDSFLGRVMYE FT QSFTALLQHCKVEIVHESVFLAGVKEMVLAGLGMAWLPLSLIEREVKAGALVMLDAREE FT YLQPVTLQLGLYRNTHSNYPEAIDRLWTLLRESEAPPASGGGGRARRKT" FT misc_feature complement(234997..235662) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 2.7e-12" FT misc_feature complement(235723..235908) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 4.6e-13" FT misc_feature complement(235768..235860) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 236048..237073 FT /transl_table=11 FT /locus_tag="BPP4074" FT /product="putative 1-aminocyclopropane-1-carboxylate FT deaminase" FT /EC_number="3.5.99.7" FT /note="Similar to Pseudomonas sp. FT 1-aminocyclopropane-1-carboxylate deaminase FT SWALL:1A1D_PSESP (SWALL:Q00740) (338 aa) fasta scores: E(): FT 7.7e-44, 40.82% id in 338 aa, and to Escherichia coli FT putative 1-aminocyclopropane-1-carboxylate deaminase yedo FT or b1919 SWALL:1A1D_ECOLI (SWALL:P76316) (328 aa) fasta FT scores: E(): 1.7e-44, 45.89% id in 329 aa" FT /db_xref="GOA:Q7W3G7" FT /db_xref="HSSP:1J0A" FT /db_xref="InterPro:IPR001926" FT /db_xref="UniProtKB/TrEMBL:Q7W3G7" FT /protein_id="CAE39355.1" FT /translation="MLHLAKFPRIKLGHFPTPLEFMPNLTRHLGGPNLYIKRDDCTGLA FT TGGNKTRKLEFLVAQAVAQGADTLITQGAVQSNHARQTAAAAARVGMKCKILLEERVPH FT PDDDYSHSGNVMLDGLMDGEIVARLPAGTDMQQAMEDLARELAGRGSKPYVIAGGGSTP FT VGALGYVACAQELLHQSFETGLRIDHVVHATGSAGTQAGLVVGLRAGNSGIPVYGISVR FT APKPRQEENVWKLVQSTVDYMGLPASAVERADVVANSDYVGEGYGISTDAMIEAVHMTA FT ALEAILLDPVYSGKGMAGLIGLIRSGHFKQGENVVFVHTGGAVGLFGYRRAFEGLPPLA FT A" FT misc_feature 236075..237013 FT /note="HMMPfam hit to PF00291, Pyridoxal-phosphate FT dependent enzyme, score 2.4e-06" FT CDS 237167..238066 FT /transl_table=11 FT /locus_tag="BPP4075" FT /product="amino-acid ABC transporter binding protein FT precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP0057" FT /db_xref="GOA:Q7W3G6" FT /db_xref="InterPro:IPR001638" FT /db_xref="UniProtKB/TrEMBL:Q7W3G6" FT /protein_id="CAE39356.1" FT /translation="MKISTVFFAALVGVAASAPAHAEGRLDKIKSSGTITIGHRDASIP FT FSYLDDKQKPIGYSMEICEKAVEAIKAKLGMAQIKVNLVPVTSSTRIPLVANGTVDLVC FT GSATNTVERQQQVAFAPTTFVTATRFAAKKSSNLKKLDDMKGKTVVSTAGTSNIRWLTQ FT ANEKDGLDMRIIPTKDHPAAMLTVANGRAAAFFMDDVLLAGLVATERKPDEWMISEDTY FT TVEPYALILPKDDPAFKKVVDDTVTGMMRDGSLAKLYKKWFESPIPPRNVNLHLPMSAA FT LQRVIANPTDSADPATYR" FT misc_feature 237167..237232 FT /note="Signal peptide predicted for BPP4075 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 22 and 23" FT misc_feature 237269..237961 FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3, score 5.7e-53" FT CDS 238209..238970 FT /transl_table=11 FT /gene="gltJ" FT /locus_tag="BPP4076" FT /product="glutamate/aspartate transport system permease FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0056" FT /db_xref="GOA:Q7W3G5" FT /db_xref="InterPro:IPR010065" FT /db_xref="UniProtKB/TrEMBL:Q7W3G5" FT /protein_id="CAE39357.1" FT /translation="MNYNWNWHIFLEMSPTGGIYLGTLLTGMAWTLGTAALAWILALGI FT GIVVGVARTTQSKWARIMGATYVEFFRNIPLLVQMFLWYFVVPEILPVQLGDAIKSIPP FT PWGIFIPAVLCLGFYTSSRVAEQVRAGIESRPAGQRMAATALGMRPSQVYRYVLLPTSF FT RIILPPLTSELLNLIKNTSVAFTIDLLELVGAARSMQEFSFQVFEAFAGATLCYFLLNL FT IVLRAMRYIETRLAVPGFIGPVSATTKLAPT" FT misc_feature join(238296..238364,238401..238469,238512..238565, FT 238701..238769,238812..238880) FT /note="5 probable transmembrane helices predicted for FT BPP4076 by TMHMM2.0 at aa 30-52, 65-87, 102-119, 165-187 FT and 202-224" FT misc_feature 238599..238832 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 7.5e-09" FT CDS 238967..239653 FT /transl_table=11 FT /gene="gltK" FT /locus_tag="BPP4077" FT /product="glutamate/aspartate transport system permease FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0055" FT /db_xref="GOA:Q7W3G4" FT /db_xref="InterPro:IPR010065" FT /db_xref="UniProtKB/TrEMBL:Q7W3G4" FT /protein_id="CAE39358.1" FT /translation="MNEFDFDVIGRSLGYLFRDGMVFTLKLTFLSTAMGLALGTLLAMC FT RLSGIRPLSAAAAYVNGLRALPLILVIFWFYFLVPYIGGWLTGAGRPLQVGGFTSALIT FT FTLFEAAYFCEIMRAGIQSIPRGQTSAAYAIGLNYWQTMAYVVLPQALRNMAPVLLTQT FT IVLFQDTSLVYVLSLTDFLGAGINVAQRDNRLVEMYLFVAAVYFVMSFAASRFVHYLQQ FT RNTMAA" FT misc_feature join(239024..239092,239150..239218,239246..239314, FT 239351..239419,239462..239530,239549..239617) FT /note="6 probable transmembrane helices predicted for FT BPP4077 by TMHMM2.0 at aa 20-42, 62-84, 94-116, 129-151, FT 166-188 and 195-217" FT misc_feature 239324..239539 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 1.9e-16" FT CDS 239678..240412 FT /transl_table=11 FT /gene="gltL" FT /locus_tag="BPP4078" FT /product="glutamate/aspartate transport ATP-binding FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0054" FT /db_xref="GOA:Q7W3G3" FT /db_xref="HSSP:1B0U" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:Q7W3G3" FT /protein_id="CAE39359.1" FT /translation="MIEIKNVSKWYGTTQVLNDCVTSVASGEVVVVCGPSGSGKSTLIK FT TVNGLEAFQKGEIIVDGVSVGARDTDLPRLRTRIGMVFQGFELFPHLSVMRNLVLAQVK FT VLKRSEEEARAHAVALLERVGLQAHQHKFPGQLSGGQQQRVAIARALAMQPIAMLFDEP FT TSALDPEMVNEVLDVMIDLAREGMTMMVVTHEMGFARKVADRVIFMDAGSIVEDCRNDD FT FFQNMDQRSPRARHFLSKIISH" FT misc_feature 239756..240313 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.6e-60" FT misc_feature 239777..239800 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 240086..240130 FT /note="PS00211 ABC transporters family signature." FT CDS 240418..241152 FT /transl_table=11 FT /locus_tag="BPP4079" FT /product="putative aspartate/glutamate racemase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0053" FT /db_xref="GOA:Q7W3G2" FT /db_xref="HSSP:1JFL" FT /db_xref="InterPro:IPR018187" FT /db_xref="UniProtKB/TrEMBL:Q7W3G2" FT /protein_id="CAE39360.1" FT /translation="MPSDDDTQFEGRFLGVLGSMGPMAGASFMQRLVALTEAACDQQHV FT PAILWNDPRVPDRPAGQSGQGADPLPWMRHGIRRLEQAGAAAIAIPCNTAHVWYPQLAQ FT SASVPVLHIVEAVLDDLRRQGIHAGRVGLLATATTLRLGLYQHEMLAQGYEPVVPPVDL FT IDGLCAQSIRLVKQNLLPQALPPALACIDSLRAMGVDAIVLGCTELPLALPHALRAELG FT VAMTDSIDALALAGLAWYRRGG" FT misc_feature 240445..241131 FT /note="HMMPfam hit to PF01177, Asp/Glu/Hydontoin racemase, FT score 1.2e-07" FT misc_feature 240682..240708 FT /note="PS00923 Aspartate and glutamate racemases signature FT 1." FT CDS complement(241172..242236) FT /transl_table=11 FT /locus_tag="BPP4080" FT /product="outer membrane porin protein precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP0051" FT /db_xref="GOA:Q7W3G1" FT /db_xref="HSSP:1E54" FT /db_xref="InterPro:IPR002299" FT /db_xref="UniProtKB/TrEMBL:Q7W3G1" FT /protein_id="CAE39361.1" FT /translation="MKRLIPAVALAGMFVGTVHAETSVTLYGIADVSVRYLSTGNDNGN FT SRVSMENGAISNSRWGLRGVEDLGDGMKAFFRLESGFNVQNGERSDPDSFFNRHAYVGL FT DGGEIGAISLGRQDTPLFTILADSYDPLTVGNYAQNSWLPVAMSRARSSNSVRYRNDKL FT AGFDVILSYAFSDSFEDHKLGEQYGGTLSYTTGPFSIGGGYMLTHSASNSDYQQRVWNL FT NASYKFETAKVFIGYFNGRDETGFVNAVMGNTSLPDNGLERKDNGYFAGVTWQATPRWA FT LTGAAYYDTSKNLVEEGDKGKRYALVGVAEYALSKRTQVYGTIDYNKVKDAATGEIQGD FT DKQIGAAVGIRHIF" FT misc_feature complement(241178..242167) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00267, Gram-negative porin, score FT 4.4e-05" FT misc_feature complement(242177..242236) FT /note="Signal peptide predicted for BPP4080 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 20 and 21" FT CDS complement(242348..243559) FT /transl_table=11 FT /gene="ampG" FT /locus_tag="BPP4081" FT /product="putative integral membrane signal transducer FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0050" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7W3G0" FT /protein_id="CAE39362.1" FT /translation="MAPLLVLGFASGLPLALSSGTLQAWATVENVSLQSIGFLTLAGTA FT YTLKFLWAPLIDRYVPPFLGRRRGWMLLTQVLLAAAIMVMGMLSPGSALLPLALMAVLV FT AFLLASQDIAFDAYSTDVLRQEERGAGAAMRVMGYRLAMIVSGGLALIVADRWLGWGNT FT YVLMGGLMLACALGTLWAPEPERPANPPRDLGAAVVEPFREFFSRRGAIDMLLLIVLYK FT LGDAFAGALSTTFLLRGAGFSATEVGTVNKVLGLAATIIGALAGGSIMTRWGLYRSLMA FT FGLLQAVSNLGYWLIAVSPKNLYLMGLAVGVENLCGGLGTASFVALLMAMCRQQFSATQ FT FALLSALAAVGRTYLAGPLTPVLVEWLDWPGFFIVTVLIALPGLWLLRLRRNVIDELDA FT QTAR" FT misc_feature complement(join(242393..242458,242471..242536, FT 242576..242641,242672..242737,242753..242818, FT 242849..242914,243020..243085,243098..243151, FT 243215..243280,243296..243352,243392..243448, FT 243479..243544)) FT /note="12 probable transmembrane helices predicted for FT BPP4081 by TMHMM2.0 at aa 5-27, 37-56, 69-88, 93-115, FT 136-154, 158-180, 215-237, 247-269, 274-296, 306-328, FT 341-363 and 367-389" FT misc_feature complement(243038..243070) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature complement(243482..243559) FT /note="Signal peptide predicted for BPP4081 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.441 between residues 26 and 27" FT CDS complement(243684..244298) FT /transl_table=11 FT /locus_tag="BPP4082" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0048" FT /db_xref="InterPro:IPR010743" FT /db_xref="UniProtKB/TrEMBL:Q7W3F9" FT /protein_id="CAE39363.1" FT /translation="MSPVSARFEPAALRPDLARIAGWIEPGSRVLDLGCGDGALLAYLR FT DHRQVRGAGVEIDDNYVIACVQRGVEVIQQNLEDGLALFDDQQFDTVVLSQTLQSMHRT FT EHILREMARVARHGVVSFPNFGYWPHGWSILRGRMPVTGQMPYQWYNTPNIHLCTLRDF FT EDLAGTLGLRILQRATFNEGREIRVFPSWRSTLALYRFAAS" FT CDS complement(244295..245542) FT /transl_table=11 FT /gene="metX" FT /locus_tag="BPP4083" FT /product="homoserine O-acetyltransferase" FT /EC_number="2.3.1.31" FT /note="ortholog of Bordetella pertussis (BX470248) BP0047" FT /db_xref="GOA:Q7W3F8" FT /db_xref="InterPro:IPR006296" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3F8" FT /protein_id="CAE39364.1" FT /translation="MTSPVLNPALPATAAAPVAATPSAVGSAGIVAPVFLRFDEPLPLA FT SGQTLNGYELAIETYGTLNAQRTNAVLVCHALNASHHVAGVSADNPKDVGWWDNMVGPG FT KPVDTNRYFVIGVNNLGSCFGSTGPASINPATGRPWGAAFPVLTVEDWVRAQARVADHF FT GIERFAAVMGGSLGGMQALSWAITCPQRVANCVVVASTPRLSAQNIGFNEVARRAIITD FT PDFHGGDYYAHGTVPGRGLSVARMIGHITYLSDDDMAEKFGRTRREPAADGAYRYGYDV FT EFEVESYLRYQGEKFSRYFDANTYLLITRALDYFDPARATGGDLARALAPATADFLLVS FT FSTDWRFPPERSREMVRALLKNGSPVTYAEIDAPHGHDAFLLDDARYHAVVRGYYERIA FT RELGLNGAVAPEGNPA" FT misc_feature complement(244358..245209) FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold, FT score 1e-09" FT misc_feature complement(245465..245542) FT /note="Signal peptide predicted for BPP4083 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.982) with cleavage site FT probability 0.412 between residues 26 and 27" FT CDS 245706..246713 FT /transl_table=11 FT /locus_tag="BPP4084" FT /product="probable malate/L-lactate dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0046" FT /db_xref="GOA:Q7W3F7" FT /db_xref="InterPro:IPR003767" FT /db_xref="UniProtKB/TrEMBL:Q7W3F7" FT /protein_id="CAE39365.1" FT /translation="MAHIYLDELQHLAAAALAAAGANPDMAESTARALVHADSQGLVPQ FT GVARVPGYAAHLRVGRAKGAARPRLAREHSGTALVDAGSGLAYPACALAAALAIERARQ FT HGVAFVAVANSHHFGAAAYHLEAVAAAGLVGLAFGNSPAAMPAWGGRRALLGTNPVAAA FT FPRRRAAPLEIDLAPGEATRGQLMIAARDGESIPEGWALDAEGRPTTDPRAGLAGTILP FT AAGAKGTMLALIVELLVCSLSGARFGFETESLFDDDGEPARLGQAFLAVDPAALAGTDT FT YLERVETLIEAMLHDDGVRLPGERRIALRKQALQHGVDIPDTLLAQLRGMCGAG" FT misc_feature 245706..245786 FT /note="Signal peptide predicted for BPP4084 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.947) with cleavage site FT probability 0.940 between residues 27 and 28" FT misc_feature 245709..246698 FT /note="HMMPfam hit to PF02615, Malate/L-lactate FT dehydrogenase, score 2.7e-55" FT CDS complement(246717..247607) FT /transl_table=11 FT /locus_tag="BPP4085" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0045" FT /db_xref="GOA:Q7W3F6" FT /db_xref="InterPro:IPR004776" FT /db_xref="UniProtKB/TrEMBL:Q7W3F6" FT /protein_id="CAE39366.1" FT /translation="MLAVVQFYWSAVVLLPLLACAGIGAYWAKRDYPFGGTFITMLVTT FT VTTPALVFHTFVTTQLDDRALLAIAGASLLALLACALACAGLLRLFGLPVRTLLPTAFV FT PNAGNLGLPVSQLAFGDAGLSAAVAFFAVNSFVTHTIAVRMLPGANTPGSWKSPVLLAS FT VAAVTLRALDIPVPDWLVATSRMLGAVTVPLMLLSLGHALALIPANGMRAGAVVAALRL FT AVGLAAGYAVVWLLGLPDLLAGALALQMAMPCAVVSYMYARRYTDVGDIAAGAVLVSTV FT VFLLLAPALLWFTRQ" FT misc_feature complement(join(246729..246794,246897..246962, FT 246984..247049,247170..247235,247344..247409, FT 247440..247505,247527..247592)) FT /note="7 probable transmembrane helices predicted for FT BPP4085 by TMHMM2.0 at aa 5-27, 34-56, 66-88, 124-146, FT 186-208, 215-237 and 271-293" FT misc_feature complement(247524..247607) FT /note="Signal peptide predicted for BPP4085 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.627) with cleavage site FT probability 0.413 between residues 28 and 29" FT CDS 247735..247971 FT /transl_table=11 FT /locus_tag="BPP4086" FT /product="transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0044" FT /db_xref="GOA:Q7W3F5" FT /db_xref="HSSP:1FSE" FT /db_xref="InterPro:IPR000792" FT /db_xref="UniProtKB/TrEMBL:Q7W3F5" FT /protein_id="CAE39367.1" FT /translation="MPQRTTLTPRELDCLHWSALGKTSWETARILGIAARTVDFHLANA FT CAKLGVANRRAAVARAVQCGLLPALTAAAPPHR" FT misc_feature 247744..247941 FT /note="HMMPfam hit to PF00196, Bacterial regulatory FT proteins, luxR family, score 2.9e-19" FT CDS complement(247943..248578) FT /transl_table=11 FT /locus_tag="BPP4087" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0043" FT /db_xref="UniProtKB/TrEMBL:Q7W3F4" FT /protein_id="CAE39368.1" FT /translation="MARLTPSAAGVNEIGDNFRPLQVDSEPIPMISTLFRFMLKKRVRI FT LWQAGCAALLLAACSPSYNWREIDVADGRVRAAFPGRVQTDTRDLALAEVPLRFSLTSA FT RVEQAVFAIGHAPLPPEVAADPARRRALGEALARSLYANLGVQPPDPLPAPGADIEIHA FT PPGERDDWLLARVWATDDMLIEAVAAGTRQTLPAERAREFIDAVELRR" FT misc_feature complement(248402..248434) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 248604..249437 FT /transl_table=11 FT /locus_tag="BPP4088" FT /product="putative lipase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0042" FT /db_xref="InterPro:IPR000073" FT /db_xref="UniProtKB/TrEMBL:Q7W3F3" FT /protein_id="CAE39369.1" FT /translation="MPAPLPGPGTPSIYLLHGLSEHAGRYERLAGWLAARGWRVGAHDH FT RGHGRSGGPPAGLARPDDLVRDATQRLLDWSRDCGRPPILLGHSLGALVAVRVAQRQWA FT PLAGLVLSSPPFRLRIPAWSRPALTWLARRQPELRVPHGLAPACISHDRAVVAAYRADP FT LVRRCITGRLALFIDQASQAALRDAPLLPCRTLLQVAGADRIVAPQGSRAFAEAAPPAL FT LTLRWYPDAWHEIFNETPAIAAPVYADLDGWLAGAATSLSREPIRATSARTAITP" FT CDS 249471..251054 FT /transl_table=11 FT /gene="gshA" FT /gene_synonym="gsh-I" FT /locus_tag="BPP4089" FT /product="putative glutamate--cysteine ligase" FT /EC_number="6.3.2.2" FT /note="Similar to Escherichia coli glutamate--cysteine FT ligase GshA or Gsh-I SWALL:GSH1_ECOLI (SWALL:P06980) (518 FT aa) fasta scores: E(): 6.7e-72, 40.53% id in 523 aa, and to FT Pseudomonas aeruginosa glutamate--cysteine ligase PA5203 FT SWALL:Q9HTY6 (EMBL:AE004933) (527 aa) fasta scores: E(): FT 9.7e-116, 58.31% id in 523 aa" FT /db_xref="GOA:Q7W3F2" FT /db_xref="InterPro:IPR006334" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3F2" FT /protein_id="CAE39370.1" FT /translation="MTDTAAQRHHRLQAHADLLTQTLRGIEKEGLRVDHQGVLARTAHP FT AGLGAALTNAHVTTDYSEALLELITGTHTEVDSLLGELRDTHRYVYGVLEGEYIWNQSM FT PATLPPEADIPIAWYGTSNTGMLKHVYRRGLAERYGKTMQCIAGVHYNFSLPDALWDVL FT VPDAPTPQARRSRGYISLIRNFTRYSWLLMYLFGSAPALAREFMRGRDHLLETLDPSTL FT YLPYATSLRMSDLGYQNKAQSRLKLCYNDLDTFLGRLYEAVTEPWPAYQAIGTRRDGQW FT IQLNTNVLQIENEYYSSIRPKRATGRCERPITALAERGVQYVEVRCLDIDPLTPEGISA FT ETARFVDAFLLFCATSDSPFFPDNGYCQRSADNFAVVVKEGRKPGLMLDREGQAVSVPQ FT WGHELLDQIAPYAALYDQALGGDAYAAALAAQRAKLDQPDLTPSARVLAALREGNVSFH FT DYSLDLSRRHADALRAQPLPAERTQAYAEAARQSVAEQLRLEQSDAVDFDTYVAHYHAA FT LKNPLPSTAS" FT CDS 251120..251638 FT /transl_table=11 FT /locus_tag="BPP4090" FT /product="outer membrane lipoprotein" FT /note="Similar to Escherichia coli outer membrane FT lipoprotein precursor Blc SWALL:BLC_ECOLI (SWALL:P39281) FT (177 aa) fasta scores: E(): 3.1e-15, 39.65% id in 174 aa, FT and to Caulobacter crescentus outer membrane lipoprotein FT CC3478 SWALL:Q9A2S8 (EMBL:AE006006) (181 aa) fasta scores: FT E(): 9.2e-21, 43.19% id in 169 aa" FT /db_xref="GOA:Q7W3F1" FT /db_xref="InterPro:IPR002446" FT /db_xref="UniProtKB/TrEMBL:Q7W3F1" FT /protein_id="CAE39371.1" FT /translation="MFRLAFLFAAAALATGAVAAGPAVRTVESVDLARYAGKWYEIAHL FT PMFFQRQCVGDTTAEYTQNTDGSLAVNNRCRTKDGSIDAASGTATVVEGSGNAKLEVSF FT FKPFKGAYWIIGLDPDYRWAVVGSPDRDNLWILSRRTQLAPADLQNALAVAKAQGYALD FT ELRYTPQQR" FT misc_feature 251120..251176 FT /note="Signal peptide predicted for BPP4090 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.794 between residues 19 and 20" FT misc_feature 251210..251245 FT /note="PS00213 Lipocalin signature." FT CDS complement(251635..252603) FT /transl_table=11 FT /locus_tag="BPP4091" FT /product="hypothetical protein" FT /note="Poor database matches. C-terminus is weakly similar FT to the C-terminal region of Bacillus halodurans FT oligopeptide ABC transporter BH0351 SWALL:Q9KFW9 FT (EMBL:AP001508) (332 aa) fasta scores: E(): 1, 24.73% id in FT 279 aa" FT /db_xref="UniProtKB/TrEMBL:Q7W3F0" FT /protein_id="CAE39372.1" FT /translation="MHFQLPVPDLSAERLGNTGTPGVWHFDSGRTGRAVMVSALVHGNE FT LCGAWALKDALAAGLRPRRGSLTLALCNLDAFDTFDASRHDAARFVDEDMNRVWSEARL FT AQPRTRERQRALALRPWVERADWLLDLHSMHEPGEPLLLTGVLPRNIALARRLGAPRHV FT VVDAGHKDGVRMRDFGRFGDPGADACALLIECGFHGEPAAREVARDMMGRLLLAADVVD FT AGDLPAGWLLPPAPGQRVLEVTDAVVAPSMDLRFAQAWQGLETLERAGTPIGWADGQPI FT VTPYDRCTLIMPSLRQLQPGVTVVRLARDYAADPREDGRLA" FT CDS complement(252633..253619) FT /transl_table=11 FT /locus_tag="BPP4092" FT /product="putative exported protein" FT /note="Similar to Agrobacterium tumefaciens hypothetical FT protein AGR_L_312 SWALL:AAL45521 (EMBL:AE009401) (329 aa) FT fasta scores: E(): 2.4e-30, 35.6% id in 323 aa, and to FT Rhizobium meliloti hypothetical protein SMA1927 FT SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): FT 4.2e-29, 33.02% id in 324 aa" FT /db_xref="GOA:Q7W3E9" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7W3E9" FT /protein_id="CAE39373.1" FT /translation="MKSHALRGALAALCIGAALAAPLPAAAAGYPDRPISLIVGYPAGG FT SVDLTARLFGEALARQTGQSVVVENVGGAGGTIGAQRVARAQADGYTLLLGSTNEMVIA FT GMINKAVKYDGAEDFTALGVIASQPMLLAASKSAGVKNAAEYLHKLRGVAPGSFNYGSS FT GVGTALHLAGEMVNQSTQTRAEHVPYRGVAPLVTDLMSGQLDYGVLVLSSGLPQVRSDK FT VVALGVTEKKRSPAAPDIPALAETPGFEGVDISVWFALYGPADLPAPVAEALRASLADV FT LKSEEFRRKVQEAGGELAQPGLDPVQFQQAETRKYGALVQAARIEAQ" FT misc_feature complement(252645..253472) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 2.9e-55" FT misc_feature complement(253539..253619) FT /note="Signal peptide predicted for BPP4092 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.837 between residues 27 and 28" FT CDS complement(253754..254758) FT /transl_table=11 FT /locus_tag="BPP4093" FT /product="putative LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2849" FT /db_xref="GOA:Q7W3E8" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W3E8" FT /protein_id="CAE39374.1" FT /translation="MLQEHSAARWPGMVPDQKPIVSAQRLVRRFSMSDLKLFEDLIALA FT QTGSFVRAAELRHVTHPAFGRRIRALETWAGAPLVERGRTPVVLTAQGEALLQAAGQVV FT EQVDRVREQLRSAGRQEERILRIGTGRSLARTLVADWIARLRQRPARLLGDGAQVELST FT GVMQEMAALLEQGRVDLVCCYEHLALSVQLTPGRFRYMTLGIDKLVPVCQADARGRPRH FT ALSEGGPAAPLITYSGGLAMARIAGDRLETFPYALAPFVRCDSLDAAHGMAQKGLGIAW FT LPWSMVAGDCRRGALAALGGRAEEIAFEVRLYRPRTRLSALAEAVWECTQRGR" FT misc_feature complement(253760..254407) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 2.6e-20" FT misc_feature complement(254477..254656) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2.2e-16" FT misc_feature complement(254522..254614) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 254792..255628 FT /transl_table=11 FT /gene="panB" FT /locus_tag="BPP4094" FT /product="probable 3-methyl-2-oxobutanoate FT hydroxymethyltransferase" FT /EC_number="2.1.2.11" FT /note="ortholog of Bordetella pertussis (BX470248) BP2850" FT /db_xref="GOA:Q7W3E7" FT /db_xref="InterPro:IPR015813" FT /db_xref="UniProtKB/Swiss-Prot:Q7W3E7" FT /protein_id="CAE39375.1" FT /translation="MSVPTAAKRITTRQLRMRTPDEPIVALTAYTAPIAGLLDAHCDLL FT LVGDSLGMVIYGMETTLPVTVDMMIQHGRAVMRGSQRACVAVDMPFGSYQEDERQAYRN FT AARIMAETGASCVKLEGGAEMASTVAFLVERGIPVMGHVGLKPQSVHGHGGFRTVGRGA FT EAEQVMADAQAIAAAGAFTVVIEGTLEPVARAITEALPVPTIGIGASPACGGQILVSDD FT VLGLFSDFTPRFVKRYAQLGPIIEQAAAAYASEVRARTFPAPEHCTGMPAPDGRPA" FT misc_feature 254813..255586 FT /note="HMMPfam hit to PF02548, Ketopantoate FT hydroxymethyltransferase, score 3.4e-120" FT CDS 256106..257251 FT /transl_table=11 FT /locus_tag="BPP4095" FT /product="outer membrane porin protein precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP2851" FT /db_xref="GOA:Q7W3E6" FT /db_xref="HSSP:1E54" FT /db_xref="InterPro:IPR002299" FT /db_xref="UniProtKB/TrEMBL:Q7W3E6" FT /protein_id="CAE39376.1" FT /translation="MSDLLQKFGSITMKKTLLAVALASGFAGTAQAAATSVTLYGLIDS FT GIGYEQVKGPNGFKQSHVGATSGVSSGSRWGLKGAEDLGDGLQAVFTLEAGFNNQTGNS FT EQSGRLFGRQATVGLSSSAWGKLEFGRQTNMASKYLGDISPFGTDYGMAGIGSTFGSAK FT SLRLDNMVMYQSPDFSGFRFGLGYSFNADTTKGDNFSTSDNPRVVTAGAKYASGPLTLV FT ATYDRLSPNHAAANGESQSVQEYALGGMYDFEVVKLHAAWGQTFDGWFSGYSMGTNPSF FT AGYSKLPSLAYKDGAKVDSLMLGATVPLGKTKVFGSWQRADPKNDKLTGGDKTYNIFAL FT GATYDLSKRTNLYAYAAYGDNYAFHDEVRNTAVAVGLRHRF" FT misc_feature 256106..256201 FT /note="Signal peptide predicted for BPP4095 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.987 between residues 32 and 33" FT misc_feature 256250..257245 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00267, Gram-negative porin, score FT 6e-07" FT misc_feature 257018..257041 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(257384..258430) FT /transl_table=11 FT /locus_tag="BPP4096" FT /product="LacI family transcriptional regulator" FT /note="Similar to Escherichia coli mgl repressor and FT galactose ultrainduction factor GalS SWALL:GALS_ECOLI FT (SWALL:P25748) (346 aa) fasta scores: E(): 4.7e-25, 32.35% FT id in 340 aa, and to Agrobacterium tumefaciens LacI family FT transcriptional regulator AGR_PAT_567 SWALL:AAL46081 FT (EMBL:AE008961) (341 aa) fasta scores: E(): 2e-35, 38.39% FT id in 336 aa" FT /db_xref="GOA:Q7W3E5" FT /db_xref="HSSP:1CJG" FT /db_xref="InterPro:IPR000394" FT /db_xref="UniProtKB/TrEMBL:Q7W3E5" FT /protein_id="CAE39377.1" FT /translation="MKGKQSPVTLRSLAQQLKVHVSTVSRVLNGTDDDARNAAAPETVE FT RIRELAQQLNYRPNPHAIGLRTQKTRTVSVLVPQLSDLVVATIYEGIDAAAADSRYLTF FT VANTGDAPPRQRQLGEMALDRRVEGLIFADARRDDTRFLDEIARRGVPMVLVSRHLGTH FT CAVTCDDVAGGRMAAEHLLALGHRDIAVLAGEQYASTGCDRSAGFIAYCREQGVDIPAK FT WILHGPFDTRAGRLAGEKLFRSARKPSAVFAVNDFLAIGLMGAVRDRGLRAGHDVAIVG FT FNDTPLAAELPISLTTIRSPMHAMGYRSMELLLERIKGGRPASERLAPQLMVRASTCPR FT PGEPSGLA" FT misc_feature complement(257408..258223) FT /note="HMMPfam hit to PF00532, Periplasmic binding proteins FT and sugar binding domain of the LacI family, score 2.5e-19" FT misc_feature complement(258353..258412) FT /note="PS00717 Sigma-54 factors family signature 1." FT CDS 258558..259430 FT /transl_table=11 FT /locus_tag="BPP4097" FT /product="branched-chain amino acid transport system FT permease protein" FT /note="Similar to Pseudomonas aeruginosa high-affinity FT branched-chain amino acid transport system permease protein FT BraD SWALL:BRAD_PSEAE (SWALL:P21627) (307 aa) fasta scores: FT E(): 4.3e-21, 36.42% id in 302 aa, and to Streptococcus FT pneumoniae R6 ABC transporter membrane-spanning FT permease-branched chain amino acid transport LivH FT SWALL:AAK99464 (EMBL:AE008443) (292 aa) fasta scores: E(): FT 3.1e-33, 36.98% id in 292 aa" FT /db_xref="GOA:Q7W3E4" FT /db_xref="InterPro:IPR001851" FT /db_xref="UniProtKB/TrEMBL:Q7W3E4" FT /protein_id="CAE39378.1" FT /translation="MNHFLQQLIYGLSVGSTYAMIALAITLVFRGMDIINFAQGEIFMV FT GAFLGYVFHVDLGLSMWLAFPLAIASALVFGSFLERVFMRRLENSNQLSLFMMTVALFI FT LLRSAAQLVFGSSAYRFPPLSEHAASIGSVRISDQYLIVIGMTLLIMLLLYLLFTRTPL FT GLSVRAVAQDKTTARMMGINVSRINNFTVALCSALGAAAGIVYAPIAVLSFDMGNLIML FT KGFTAALLGGLGLLSGAVLGGIMLGVIEQFGTLLINSAYKDLVSFSILLLIILVKPNGI FT LGKKQIKKV" FT misc_feature 258567..259415 FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component, score 4.2e-42" FT misc_feature join(258576..258644,258726..258794,258831..258899, FT 258963..259031,259125..259193,259236..259304, FT 259317..259385) FT /note="7 probable transmembrane helices predicted for FT BPP4097 by TMHMM2.0 at aa 7-29, 57-79, 92-114, 136-158, FT 190-212, 227-249 and 254-276" FT CDS 259459..260367 FT /transl_table=11 FT /locus_tag="BPP4098" FT /product="putative branched-chain amino acid transport FT system permease protein" FT /note="Similar to the C-terminal region of Salmonella FT typhimurium high-affinity branched-chain amino acid FT transport system permease protein LivM or LivE FT SWALL:LIVM_SALTY (SWALL:P30296) (425 aa) fasta scores: E(): FT 1.3e-12, 31.53% id in 333 aa, and to N-terminal region of FT Deinococcus radiodurans branched-chain amino acid ABC FT tranpsorter, ATP binding protein DRA0261 SWALL:Q9RYP8 FT (EMBL:AE001863) (587 aa) fasta scores: E(): 3.4e-24, 32.48% FT id in 314 aa" FT /db_xref="GOA:Q7W3E3" FT /db_xref="InterPro:IPR001851" FT /db_xref="UniProtKB/TrEMBL:Q7W3E3" FT /protein_id="CAE39379.1" FT /translation="MFRRKYGTALCALVLIALPALLNDPFITHLGVRAATYAIVVMGLT FT LFAGYTGQISLGHAAFFGLAAYLSGMMAKAGVPYLVSVPVATAAVGVLVLRTSGHYLAL FT ASIAVAVIVQVIIKNSTITGGPSGLTAVPAPDFFGWSLTSDLGYYYYVLLCMFAGFVIL FT RRVIDSRTGDALQAIANNELAAQSLGIPVFRYKVLSFTISTLFAAFAGTLFVHYDGFID FT PDRLGIHVSVLFLIMTFVGGIGNIYGSVIGAFALTIIEEYAQEFGQYNILVYGLLLALV FT ILFLPKGLVDLPNKLKSLRAR" FT misc_feature join(259486..259554,259573..259641,259684..259743, FT 259756..259809,259894..259947,260041..260109, FT 260152..260220,260254..260313) FT /note="8 probable transmembrane helices predicted for FT BPP4098 by TMHMM2.0 at aa 10-32, 39-61, 76-95, 100-117, FT 146-163, 195-217, 232-254 and 266-285" FT misc_feature 259525..260346 FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component, score 2.7e-26" FT CDS 260370..261134 FT /transl_table=11 FT /locus_tag="BPP4099" FT /product="high-affinity branched-chain amino acid transport FT ATP-binding protein" FT /note="Similar to Pseudomonas aeruginosa high-affinity FT branched-chain amino acid transport ATP-binding protein FT BraF SWALL:BRAF_PSEAE (SWALL:P21629) (255 aa) fasta scores: FT E(): 7.9e-33, 45.38% id in 249 aa, and to Ralstonia FT solanacearum probable amino acid ATP-binding ABC FT transporter protein RS02664 SWALL:Q8XWN5 (EMBL:AL646070) FT (257 aa) fasta scores: E(): 1.3e-41, 52.38% id in 252 aa" FT /db_xref="GOA:Q7W3E2" FT /db_xref="HSSP:1JI0" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W3E2" FT /protein_id="CAE39380.1" FT /translation="MLSVNNVTLSFGGVQALSDVSFTMQANVIHGLIGPNGAGKTSLFN FT VVSGIYTPTAGSIRFDGKEISRLKLHQINRLGVARTFQNIMVFPDLTLAENVMIGRQDR FT TRAGVLASILRTPGERAERRATRERAIELLSYVGLAGKADELASNLPYSEQRQLDIARA FT LATDPRILLLDEPAAGLNLQERIALRKLILKLHELGYTIVLIEHDIKLVMGLCEHIVVL FT EYGHKIADGTPQEVQRDEKVIAAYLGAGAQHA" FT misc_feature 260448..261044 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.1e-49" FT misc_feature 260469..260492 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 261127..261840 FT /transl_table=11 FT /locus_tag="BPP4100" FT /product="high-affinity branched-chain amino acid transport FT ATP-binding protein" FT /note="Similar to Pseudomonas aeruginosa high-affinity FT branched-chain amino acid transport ATP-binding protein FT BraG SWALL:BRAG_PSEAE (SWALL:P21630) (233 aa) fasta scores: FT E(): 1.3e-36, 52.13% id in 234 aa, and to Thermotoga FT maritima branched chain amino acid ABC transporter, FT ATP-binding protein TM1139 SWALL:Q9X0M3 (EMBL:AE001771) FT (239 aa) fasta scores: E(): 2.6e-36, 52.76% id in 235 aa" FT /db_xref="GOA:Q7W3E1" FT /db_xref="HSSP:1JI0" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W3E1" FT /protein_id="CAE39381.1" FT /translation="MLKIDRIDTYYGRVQALKQCSLDVAAGEFVTLLGANGAGKSTLLK FT SILGLQPIRGGAIEFMGERIDRQAPDAIIRKGISIVPEGRRVFPEFTVAENLVIGARAR FT RSTHHEIQQDIERILAQFPRLKERYRQKAGTMSGGEQQMVAIGRALMGRPKLLLLDEPS FT LGLAPLVVAELMDKLREIHAAGATILLVEQNVTLALQTAQRGYLLETGQIVGSDDTQAL FT LHSDLVRKTYLGMDG" FT misc_feature 261205..261759 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 3.1e-48" FT misc_feature 261226..261249 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 261532..261576 FT /note="PS00211 ABC transporters family signature." FT CDS 261901..263046 FT /transl_table=11 FT /locus_tag="BPP4101" FT /product="putative binding-protein-dependent transport FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3322" FT /db_xref="GOA:Q7W3E0" FT /db_xref="InterPro:IPR000709" FT /db_xref="UniProtKB/TrEMBL:Q7W3E0" FT /protein_id="CAE39382.1" FT /translation="MIAFAPRTLAVASIAATVALAGCGQKEEQAAAGATPLRIGIIESV FT TGPAASYGDAHNKGTRLAVEEINKAGGFNGVPLEVHGEDDKSDPATGINAAKKLITQRK FT VDAIVGSAASLVTIAFSKENEKYKVPLVNGMAGSPTITEQGFQYTWRIKITDNQLDTKA FT IEHYVQNKNARKVAFLAENSDYGKPPTKAAADRARELGAEVVAYEEYNRGETDFKAQLT FT NIRDRAPDVLFVHGYYTEGSIIARQIRELGLKTQLIVNEGQGVPKFQELAGAAAEGAVF FT PTTWLPGLSDARSKQFETAYQARYNSLPGAFDAGSYEAVYTVVEAARKGGGTKPEQIQA FT GLAQLQGFETLLGPVRFDKKNQNDGSIRLARFNNGKIEPLQ" FT misc_feature 261901..261963 FT /note="Signal peptide predicted for BPP4101 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.941) with cleavage site FT probability 0.428 between residues 21 and 22" FT misc_feature 261937..261969 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 263121..264449 FT /transl_table=11 FT /locus_tag="BPP4102" FT /product="putative amidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3321" FT /db_xref="GOA:Q7W3D9" FT /db_xref="InterPro:IPR000120" FT /db_xref="UniProtKB/TrEMBL:Q7W3D9" FT /protein_id="CAE39383.1" FT /translation="MLTIAALASAYRTRQTTPSATLRDLLDRIAASPLNSFISVDPETV FT MRQAANADAAFAGGAPVGALHGIPVAVKDLIDVAGMRTTMGSQQYANQASAERDAQVVA FT RLRAEGAIIVGKTNTHEFAYGPTGDRSYFGAACNPRDPARMTGGSSSGSAAALGAGLCA FT AALGTDTSASIRLPAALCGVVGLKPTYDLLPRAGAFDLSQTLDHIGPMSATVRDNAVLL FT DALAGQPAHSYARLAGQSVRGRTVGLATGFYLDYLDAPVRQALEQAQEAFRQAGAQVVP FT IEIAQVQAIYEAQQLVLKTEAYARHLRALTTNAPYQDEVRARLLTGADVLAVDYLQAMA FT MRAVARRAFDETLAQVDVLLCPTCGLTAPLRDQRTTALDGQEYSTTWLLTRLTAPTNLS FT GHPSLSVPFGADSQGLPISMQLIGRHLDEAVLYQFGQALEDAA" FT misc_feature 263178..264416 FT /note="HMMPfam hit to PF01425, Amidase, score 3.3e-137" FT misc_feature 263448..263471 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(join(264485..264805,264809..265075)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP4103" FT /product="conserved hypothetical protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP3320" FT /db_xref="PSEUDO:CAE39384.1" FT CDS 265366..266160 FT /transl_table=11 FT /locus_tag="BPP4105" FT /product="putative IclR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3319" FT /db_xref="GOA:Q7W3D8" FT /db_xref="InterPro:IPR005471" FT /db_xref="UniProtKB/TrEMBL:Q7W3D8" FT /protein_id="CAE39385.1" FT /translation="MRCKGIRHMDKTLLKGLTVLEAISRLDGATPTLDQIAEEIGLTRS FT NTHRTLQTLAHAGYVRRDPATGSYQCTLKLFELGARQLASLDARKLAPPFMGELARLTN FT ETVHLSVLDGLDVVYVDKLDSPQPLLAYSTVGGRAPAYAVATGKALLACQTADYLDHYG FT AAIKRHTEDTHVSLLALKQELADVNRIGYAINRGEWRQGIGGIAAPIFNGLDKAVAALG FT ISGPLERLTNQKMREYAPLVQQAARQLSAHMGYRGGYFGGAA" FT misc_feature 265570..266121 FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator, score 1.3e-54" FT CDS 266177..267337 FT /transl_table=11 FT /locus_tag="BPP4106" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3318" FT /db_xref="GOA:Q7W3D7" FT /db_xref="HSSP:1PQY" FT /db_xref="InterPro:IPR003673" FT /db_xref="UniProtKB/TrEMBL:Q7W3D7" FT /protein_id="CAE39386.1" FT /translation="MNQESTLAGVRVIEICNVAAGPFCGMLLADMGADVIKIEPPGTGD FT TLRSWAPITDGYSENFASLNRNKRSVTLNLKNEAERDAAIELIAGADVLIENNRPGVMD FT RLGLGQQAMRARNPRLVYCSVSAYGQSGPRSQEGGFDLTLQAMSGLMSVTGEEGGAPVK FT CGVPVCDFTAGLYAAFAIAAALRRVQADGQGTHIDVSMLGATLGIAALQTSQYFGTGAD FT PVKLGSAHPRNAPYQVFRCKNGYFGMAAGNNSLWKAVCKVVERDDLHADPRFANPTDRA FT EHQVALRDILEAIFAEHDSHAWLERFRQAGVPCAPINDYSEVLADPQVEHMDWVQDLEL FT PNGVRTRTFVSPVRFDARTAGVMRRPPALDEHNDEILSALAARPAG" FT misc_feature 266195..266263 FT /note="1 probable transmembrane helix predicted for BPP4106 FT by TMHMM2.0 at aa 7-29" FT misc_feature 266387..266953 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family, score FT 6.1e-59" FT CDS 267334..268077 FT /transl_table=11 FT /locus_tag="BPP4107" FT /product="putative enoyl-CoA hydratase/isomerase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3317" FT /db_xref="GOA:Q7W3D6" FT /db_xref="InterPro:IPR001753" FT /db_xref="UniProtKB/TrEMBL:Q7W3D6" FT /protein_id="CAE39387.1" FT /translation="MSAMSASLPLAIERRPAAWTFTLSRPEKRNALSAELVEALIDGVD FT AAHREQVPLLVFAGAGRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLA FT LAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVLGTRRFRDIVGADQALSILGS FT ARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATALDPATRATLHRVLRDDHDDADL FT AALARSAAQPGFKARIRDYLAQPAA" FT misc_feature 267388..267882 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family, score 5.1e-10" FT CDS complement(268074..268949) FT /transl_table=11 FT /gene="copB" FT /locus_tag="BPP4108" FT /product="copper resistance protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3316" FT /db_xref="GOA:Q7W3D5" FT /db_xref="InterPro:IPR007939" FT /db_xref="UniProtKB/TrEMBL:Q7W3D5" FT /protein_id="CAE39388.1" FT /translation="MAASLGLAAAAASAWAQAPAMDHGSMPGMDHGAAPASAMDHGSMP FT GMDHGAAPAPAIGALPSSDGAGDQSYAAYGIHSHMMDDMATSQLLFDKLGMTYDRDRRT FT GLQWDGQFWVGRDLDKLWIKSEGERVGGRSDGKVEAFWNRTISPFWDLQVGARRDFGTG FT PKRNWGAIGLQGVAPYNIETEVTAYVGGSGRTALALKAEYDLLLTQRLVLTPEIEASVY FT GKDDKARGIGAGLSDASFSLRLRYEITREVAPYVGVSFGRKFGRTASYASEEGESRSER FT AIMAGVRIWF" FT misc_feature complement(268902..268949) FT /note="Signal peptide predicted for BPP4108 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.953 between residues 16 and 17" FT CDS complement(268996..270753) FT /transl_table=11 FT /gene="copA" FT /locus_tag="BPP4109" FT /product="copper resitance protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3315" FT /db_xref="GOA:Q7W3D4" FT /db_xref="HSSP:1HFU" FT /db_xref="InterPro:IPR017909" FT /db_xref="UniProtKB/TrEMBL:Q7W3D4" FT /protein_id="CAE39389.1" FT /translation="MSRAVSNQRRRFVQGLAGGGVLAGLGLWRQAAWARPGAAQPEVLS FT GTEFNLEIGRTPANFTGAARMATTVNGSIPAPILRWREGDTVTLRVTNRLDEDTSIHWH FT GILLPTGMDGVPGLSFPGIRPGETFTYRFQVRQSGTYWYHSHSGFQEQTGLYGAIVIEP FT RRADPVRAERDHVVLLSDWTDEDPMSVFRKLKVMPDYYNYIQPTVDNLVDDARKQGWAS FT ALGERLMWQQMRMNQTDLADVSGATYTYLANGKSPAGNWTGLFKPGERVRLRFINGSAM FT TYFDVRIPGLKMTVVAADGLPVRPVEVDEFRIAVAETYDVIVEPAEDRAYTIFSQSMDR FT SGYARATLAPREGMHAEVPALDPVQMLTMMDMGMAHDMPGMDHGAAMDHGAMGGMDHAA FT MGHGSGEASGGMVEVRHPYPAEHGPANSMLPDIVTTRLDDPGVGLRDNGRKVLTYADLR FT SMVEPEDNRAPTREIELHLTGNMDRYMWSFNGLKFSQAKPIVLKYGERVRFVLVNDTMM FT THPIHLHGLWSDLESPDGNFQVRKHTISLNPAQRISYRVSADARGNWAYHCHLLYHMEA FT GMFRAVVVE" FT misc_feature complement(269002..269400) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00394, Multicopper oxidase, score FT 0.0021" FT misc_feature complement(269008..269070) FT /note="PS00079 Multicopper oxidases signature 1." FT misc_feature complement(269020..269055) FT /note="PS00080 Multicopper oxidases signature 2." FT misc_feature complement(269695..270252) FT /note="HMMPfam hit to PF00394, Multicopper oxidase, score FT 1.2e-17" FT misc_feature complement(269926..269955) FT /note="PS00215 Mitochondrial energy transfer proteins FT signature." FT misc_feature complement(270259..270633) FT /note="HMMPfam hit to PF00394, Multicopper oxidase, score FT 3.2e-08" FT misc_feature complement(270277..270339) FT /note="PS00079 Multicopper oxidases signature 1." FT misc_feature complement(270652..270717) FT /note="1 probable transmembrane helix predicted for BPP4109 FT by TMHMM2.0 at aa 12-34" FT misc_feature complement(270652..270753) FT /note="Signal peptide predicted for BPP4109 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.962) with cleavage site FT probability 0.882 between residues 34 and 35" FT CDS complement(270797..271291) FT /transl_table=11 FT /locus_tag="BPP4110" FT /product="putative blue copper protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3314" FT /db_xref="GOA:Q7W3D3" FT /db_xref="InterPro:IPR000923" FT /db_xref="UniProtKB/TrEMBL:Q7W3D3" FT /protein_id="CAE39390.1" FT /translation="MKARVYAVRMAAAAAACGISFGAAASGAHGGGHGGGHGAAATAIG FT KPGVASKASRTVNVDMTDAMRFTPDQIEVKAGETVRFKVTNSGKIRHEMVLGTDADLGA FT HYQMMLKDPGMRHKEPNSVSLDAGKRGEIVWQFDKAGRVAFGCLEPGHYPAGMKGAVSV FT K" FT misc_feature complement(270821..270871) FT /note="PS00196 Type-1 copper (blue) proteins signature." FT misc_feature complement(271211..271276) FT /note="1 probable transmembrane helix predicted for BPP4110 FT by TMHMM2.0 at aa 5-27" FT misc_feature complement(271217..271291) FT /note="Signal peptide predicted for BPP4110 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.731 between residues 25 and 26" FT tRNA complement(271605..271679) FT /note="tRNA Arg anticodon CCG, Cove score 66.19" FT CDS 271779..272783 FT /transl_table=11 FT /locus_tag="BPP4111" FT /product="putative cytochrome c" FT /note="Similar to Ralstonia solanacearum probable FT transmembrane protein RS00536 SWALL:Q8XUU9 (EMBL:AL646073) FT (294 aa) fasta scores: E(): 1.1e-39, 58.41% id in 303 aa. FT Internal region of the CDS is similar to to Chlorobium FT limicola f.sp. thiosulfatophilum cytochrome c-555 FT SWALL:C555_CHLLT (SWALL:P00123) (86 aa) fasta scores: E(): FT 0.00018, 50% id in 80 aa. CDS contains an alanine and FT proline rich region 200 to 248" FT /db_xref="GOA:Q7W3D2" FT /db_xref="HSSP:1CC5" FT /db_xref="InterPro:IPR003088" FT /db_xref="UniProtKB/TrEMBL:Q7W3D2" FT /protein_id="CAE39391.1" FT /translation="MRGARLRCALLCSDWIVSCRLLGVPRYPDSQDLVMSNEQEHIEEH FT VSPIKTPKQLITTVVLAFVVPIIIIMLVNVVTSGTKVGAGSDTLGEEAVAKRIAPVAGF FT ELVDANAPKVHKTGEQVFTAVCTACHTAGVAGAPKMGDNAAWAPFIKAGYDAMLNVALH FT GKGGMPAKGGNPALSDYEVARAVVYMANQSGGSLPEPAAPAEEGAKPAEAAAPAAAAAP FT APAPAAPAAAAPAPAAAAAAAPAAPAEQQAAVNPAGEKLYKATCFACHATGVANAPKFG FT DKAAWAPYIQTGMDAMLKVAMQGKGAMPPKGGAATASEDDIRAAIEYMVNAAK" FT misc_feature 271941..272009 FT /note="1 probable transmembrane helix predicted for BPP4111 FT by TMHMM2.0 at aa 55-77" FT misc_feature 272097..272357 FT /note="HMMPfam hit to PF00034, Cytochrome c, score 1.3e-07" FT misc_feature 272154..272171 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature 272538..272777 FT /note="HMMPfam hit to PF00034, Cytochrome c, score 0.00078" FT CDS complement(join(272972..273565,273565..274473)) FT /pseudo FT /transl_table=11 FT /gene="paaH" FT /locus_tag="BPP4112" FT /product="putative 3-hydroxyacyl-CoA dehydrogenase FT (pseudogene)" FT /EC_number="1.1.1.157" FT /note="ortholog of Bordetella pertussis (BX470248) BP3310" FT /note="Similar to Escherichia coli probable FT 3-hydroxybutyryl-CoA dehydrogenase PaaH SWALL:PAAH_ECOLI FT (SWALL:P76083) (475 aa) fasta scores: E(): 3.3e-36, 38.99% FT id in 495 aa, and to Ralstonia solanacearum putative FT 3-hydroxybutyryl-CoA dehydrogenase oxidoreductase protein FT RS03581 SWALL:Q8XXV0 (EMBL:AL646067) (502 aa) fasta scores: FT E(): 6.5e-119, 69.27% id in 498 aa. Contains a frameshift FT after codon 303" FT /db_xref="PSEUDO:CAE39392.1" FT misc_feature complement(272993..273244) FT /note="HMMPfam hit to PF00725, 3-hydroxyacyl-CoA FT dehydrogenase, C-terminal domain, score 0.00063" FT misc_feature complement(273622..273915) FT /note="HMMPfam hit to PF00725, 3-hydroxyacyl-CoA FT dehydrogenase, C-terminal domain, score 1.1e-21" FT misc_feature complement(273919..274473) FT /note="HMMPfam hit to PF02737, 3-hydroxyacyl-CoA FT dehydrogenase, NAD binding domain, score 6.5e-70" FT CDS complement(274557..275786) FT /transl_table=11 FT /locus_tag="BPP4114" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3309" FT /db_xref="GOA:Q7W3D1" FT /db_xref="HSSP:1PQY" FT /db_xref="InterPro:IPR003673" FT /db_xref="UniProtKB/TrEMBL:Q7W3D1" FT /protein_id="CAE39393.1" FT /translation="MSQRPAPLTGIRVLDLTRVLAGPWCTQNLADLGAEVIKIERPGAG FT DDTRAWGPPYLKDAAGNDTTEAAYYLSANRNKLSVALDIATPRGAELVRELAQQCDILV FT ENFKVGGLRKYGLDYESVKAINPRLIYCSITGFGQTGPYASRPGYDFMIQGMGGLMSIT FT GERDDLPGGGPQKAGVAVTDLMTGMYSTVGILAALHERNRSGLGQHIDMALLDCQVAML FT ANQNLNYMTSGKAPRRAGNAHQNLMPYQVFAVSDGHLIVAVGNDSQFRNYCRVIDLPEL FT ADDPRFATNPQRVQNRDELVPLLAERMATGERDAWLAALESAGVPAGPINTLDQVFEDP FT QVVARQIRRELPHPSAGTVPTASSPLRFSDSPVEYRRAPPLLGEHTRQVLSERLGLSET FT EIQALAAGQG" FT misc_feature complement(274968..275549) FT /note="HMMPfam hit to PF02515, CAIB/BAIF family, score FT |