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EBI DbfetchID BX640432; SV 1; linear; genomic DNA; STD; PRO; 346301 BP. XX AC BX640432; XX DT 09-AUG-2003 (Rel. 76, Created) DT 23-OCT-2008 (Rel. 97, Last updated, Version 7) XX DE Bordetella parapertussis strain 12822, complete genome; segment 10/14 XX KW complete genome. XX OS Bordetella parapertussis OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Bordetella. XX RN [2] RP 1-346301 RA Sebaihia M.; RT ; RL Submitted (06-AUG-2003) to the EMBL/GenBank/DDBJ databases. RL Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute, RL Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail: RL ms5@sanger.ac.uk XX RN [3] RA Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E., RA Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., RA Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A., RA Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I., RA Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., RA Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., RA Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., RA Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., RA Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., RA Barrell B.G., Maskell D.J.; RT "Comparative analysis of the genome sequences of Bordetella pertussis, RT Bordetella parapertussis and Bordetella bronchiseptica"; RL Nat. Genet. 35(1):0-0(2003). XX DR EMBL-CON; BX470249. DR RFAM; RF01070; sucA. XX FH Key Location/Qualifiers FH FT source 1..346301 FT /organism="Bordetella parapertussis" FT /strain="12822" FT /mol_type="genomic DNA" FT /db_xref="taxon:519" FT CDS 82..582 FT /transl_table=11 FT /locus_tag="BPP2917" FT /product="glutathione peroxidase" FT /EC_number="1.11.1.9" FT /note="ortholog of Bordetella pertussis (BX470248) BP1301" FT /db_xref="GOA:Q7W6J2" FT /db_xref="HSSP:1GP1" FT /db_xref="InterPro:IPR012335" FT /db_xref="UniProtKB/TrEMBL:Q7W6J2" FT /protein_id="CAE38210.1" FT /translation="MNTMYDFSAPTITGAERALADFRGQVALVVNVASRCGFTPQYSGL FT EELYRSYRNEGFVVLGFPCNQFGRQEPGDEAAIAQFCETQYAISFPLFAKIDVNGAHAH FT PLYRWLKAHKPGLLGTRAIKWNFTKFLVGRDGLPLRRYAPAHTPESLRHDIARACAAPG FT PTP" FT misc_feature 88..414 FT /note="HMMPfam hit to PF00255, Glutathione peroxidase, FT score 7.7e-56" FT misc_feature 259..282 FT /note="PS00763 Glutathione peroxidases signature 2." FT CDS 608..1393 FT /transl_table=11 FT /locus_tag="BPP2918" FT /product="putative glutathione transferase" FT /EC_number="2.5.1.18" FT /note="ortholog of Bordetella pertussis (BX470248) BP1300" FT /db_xref="GOA:Q7W6J1" FT /db_xref="HSSP:1K0D" FT /db_xref="InterPro:IPR004046" FT /db_xref="UniProtKB/TrEMBL:Q7W6J1" FT /protein_id="CAE38211.1" FT /translation="MDMARPRGATRYHDGCPPAPPGIRSGRAMIDLYYWTTPNGHKITL FT FLEETGLPYRIHPVNISKGEQFQPEFLAIAPNNRIPAIVDQAPADGGAPIPLFESGAIL FT LYLAEKTGQFIPADLRGRADVLQWLFWQMGGLGPMAGQNHHFSAYAPERIPYAIERYVK FT ETNRLYGVLDRQLAQREFVAGDYSIADMAAYPWIVPHERQGQDLNEFPNLKRWFEAIGA FT RPATQRAYALADRINTKPSVDTEESRRVLFGQTAANVRR" FT misc_feature 692..934 FT /note="HMMPfam hit to PF02798, Glutathione S-transferase, FT N-terminal domain, score 1.2e-14" FT misc_feature 953..1279 FT /note="HMMPfam hit to PF00043, Glutathione S-transferase, FT C-terminal domain, score 4.7e-10" FT CDS 1405..1869 FT /transl_table=11 FT /locus_tag="BPP2919" FT /product="putative acetyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1299" FT /db_xref="GOA:Q7W6J0" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:Q7W6J0" FT /protein_id="CAE38212.1" FT /translation="MTATLSFRRAAATDLPAIIALLADDALGQQREDPTMPPQPAYLAA FT FGAIDRDPNQFLAVVERAGQIIGCLQLSFIPGLSRRGLWRGQIESVRVAASERGAGTGR FT ALFEWAIAQCRDKGCGLVQLTTDKQRADARRFYESLGFKATHEGMKLDLA" FT misc_feature 1576..1833 FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family, score 1.6e-18" FT CDS 1866..2159 FT /transl_table=11 FT /locus_tag="BPP2920" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1298" FT /db_xref="UniProtKB/TrEMBL:Q7W6I9" FT /protein_id="CAE38213.1" FT /translation="MKGIPAMHGEYKVPGGKLVVIDLEVAQGRLRQVRLSGDFFLEPPE FT ALEAINRGLDGLPADAGAEGIAQAVRAALPAEAELFGFSPEAVAVVVQRALS" FT CDS 2156..2932 FT /transl_table=11 FT /locus_tag="BPP2921" FT /product="putative lipoate-protein ligase A" FT /note="ortholog of Bordetella pertussis (BX470248) BP1297" FT /db_xref="GOA:Q7W6I8" FT /db_xref="InterPro:IPR004143" FT /db_xref="UniProtKB/TrEMBL:Q7W6I8" FT /protein_id="CAE38214.1" FT /translation="MNRTAWTDYDWQLIHPGPLPPALHMALDAAITDEVGAGQRPPTLR FT IWEWSQPAVIIGRFQSLRNEVDPDGARRHGVTVVRRVSGGGAMFVEPGNTITYSLSVPQ FT ALVAGMSFQESYAFLDAWVIRALHELGIKAWYQPLNDIASDAGKIGGAAQARRAGAVLH FT HVTMSYDIDADKMVEVLRIGREKLSDKGTTSARKRVDPLRSQTGLARDTIIERMLQTFA FT GMCRLTPAEIGAATLQAAQRQAEEKFSSPEWTALVP" FT misc_feature 2309..2680 FT /note="HMMPfam hit to PF03099, Biotin/lipoate A/B protein FT ligase family, score 2e-28" FT CDS 2961..3788 FT /transl_table=11 FT /locus_tag="BPP2922" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1296" FT /db_xref="UniProtKB/TrEMBL:Q7W6I7" FT /protein_id="CAE38215.1" FT /translation="MKYRATALPPPRLKLLCAAGALALLAACGSAPPADITLAGAAPAA FT AGAEPATIGDVRTERIQWASAKPGCTGECPRVEIDSVSFPGILALSELVDRQLAAMTGV FT DQNLRGRYQTLSEYTQYFWKTAQARDATYFKASVKDVVGDIVAVELGTTQFLTGAAHGI FT PATHYLNWQRGQGRPLTLDEVLIPSRKAEYVVAMREAHQRWLAANEDAQRDRAAYDRMW FT PFQETTNFALTRQGLVVKYDAYTIAPYSHGQPEILIPYERLRGVLRPEFIPAG" FT misc_feature 2961..3098 FT /note="Signal peptide predicted for BPP2922 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.346 between residues 46 and 47" FT misc_feature 3012..3044 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 3869..4384 FT /transl_table=11 FT /locus_tag="BPP2923" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1295" FT /db_xref="UniProtKB/TrEMBL:Q7W6I6" FT /protein_id="CAE38216.1" FT /translation="MRLPRSERPSTTAPPMTESARPTPATILLYTEEQRGNQWVESIVV FT GMLSDISGADKLVVIKDPHSGIKFVYRVEHDCNNLDAAAITELDETHFDGKRTTAINGM FT NYRMGNPDSAMKLLRAKPRWIQDKGAVLSVLLRNAAARSTSFVSRRIDRERLTRVPADV FT PVERLPQP" FT CDS 4418..5404 FT /transl_table=11 FT /gene="psd" FT /locus_tag="BPP2924" FT /product="phosphatidylserine decarboxylase proenzyme" FT /EC_number="4.1.1.65" FT /note="ortholog of Bordetella pertussis (BX470248) BP1294" FT /db_xref="GOA:Q7W6I5" FT /db_xref="InterPro:IPR005221" FT /db_xref="UniProtKB/Swiss-Prot:Q7W6I5" FT /protein_id="CAE38217.1" FT /translation="MPPVATDAARGPSVSVPTSAAPARRRSPNPYMPFKDQLFLASQYL FT APHHLVSRLMGRVADCRAPEIKNRMIARFVRRYNVDMSEALVEDPLAYASFNDFFTRAL FT KPDARPLDDEPGAALCPADGAISQIGAIDNGRIFQAKGHSFGLTDLLGGDAERAAPFAG FT GQFATIYLSPRDYHRVHMPLAGTLREMVHVPGRLFSVNPLTARSVPELFARNERVACLF FT DTEHGPMALVLVGAMIVASIETVWAGLVTPHKRQVRSVRYDAAARAPIHLDKGAEMGRF FT KLGSTVIVLFGPKRLRWLDLPSVRGPVRMGETLALPASTAISFPESE" FT misc_feature 4703..5365 FT /note="HMMPfam hit to PF02666, Phosphatidylserine FT decarboxylase, score 5.4e-80" FT CDS 5489..6697 FT /transl_table=11 FT /gene="lldD" FT /gene_synonym="lctD" FT /locus_tag="BPP2925" FT /product="putative L-lactate dehydrogenase" FT /EC_number="1.1.2.3" FT /note="ortholog of Bordetella pertussis (BX470248) BP1293" FT /db_xref="GOA:Q7W6I4" FT /db_xref="HSSP:1FCB" FT /db_xref="InterPro:IPR017934" FT /db_xref="UniProtKB/TrEMBL:Q7W6I4" FT /protein_id="CAE38218.1" FT /translation="MSSSALPLSAASAARAAAVPASLRKLLSLNDFEAAARRRLPRPIF FT GYVAGAAEDNQALDDNRRAFAEYGFLPRVLVDVSARHTRTELFGQEWAAPFGVAPMGIS FT ALSAYRGDIVLARAARAAGIPAIMSGSSLIPLEEVARQAPGTWFQAYLPGDPARIDALV FT ERVARAGYRTLVLTVDIPVSANRENNVRTGFSTPLKPGLRLAWDGLSRPRWLTGTFLRT FT LLAHGMPHFENSFATRGAPILSANVLRDFSARDHLDWSHVQRIRRSWRGELVIKGIMHP FT RDAALARAHGADGIIVSNHGGRQLDGACAPLRVLPDIAEAAGAMAVMMDSGIRRGGDVL FT KALALGARFVFLGRPFNYAAAVGGEAGVAHAIGLLREEIDRNMAMLGVTRCTAMAPGLL FT RRL" FT misc_feature 5489..5542 FT /note="Signal peptide predicted for BPP2925 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.559 between residues 18 and 19" FT misc_feature 5594..6691 FT /note="HMMPfam hit to PF01070, FMN-dependent dehydrogenase, FT score 1.2e-120" FT misc_feature 6380..6400 FT /note="PS00557 FMN-dependent alpha-hydroxy acid FT dehydrogenases active site." FT CDS complement(6710..7555) FT /transl_table=11 FT /locus_tag="BPP2926" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1292" FT /db_xref="InterPro:IPR004872" FT /db_xref="UniProtKB/TrEMBL:Q7W6I3" FT /protein_id="CAE38219.1" FT /translation="MGFLAQGEAAMRIRSGWMQWLGALALWCAAAGAGAAQQAPLRIGV FT IASVANEATEIAIAQARAQGLEVKLIEFNDWVMPNIAAAEGSIDANFFQHEPFLQLFNR FT SRGTHLTPIAYGYSTTIGLFSKKLKKGDAIPQGATIAVPNDPVNTGRALQLLASIGLIG FT LKPGAGHQATLQDVTDNPRRIKLVQLEGSQSARTFDDVTASVTYTTFAKHAGIDEKDGL FT AFDNTDPETVRRYAIRWVATPERAQDPRLLAFIRIYQSSPEVKATLRRLYGELIDFPWE FT " FT misc_feature complement(6716..7438) FT /note="HMMPfam hit to PF03180, NLPA lipoprotein, score FT 2.2e-69" FT misc_feature complement(7442..7555) FT /note="Signal peptide predicted for BPP2926 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.920) with cleavage site FT probability 0.495 between residues 38 and 39" FT CDS complement(7659..8180) FT /transl_table=11 FT /locus_tag="BPP2927" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1291" FT /db_xref="InterPro:IPR014914" FT /db_xref="UniProtKB/TrEMBL:Q7W6I2" FT /protein_id="CAE38220.1" FT /translation="MSHVSLWRIATTAGKYRADDLSGAGAAAVGGRYNSPGTAVVYTSS FT CVALAVLETVVHFAAPATAQANRYLIEIVVPRAVYEARQVLEVDALHKRHPFWDAVPFA FT EVSQRIGDAWVRDNGSALLQLPSAIVPCRGVPDCNLLINPQHPDAASVRVARREKFIYD FT PRLAPGGPRQ" FT CDS complement(8177..8674) FT /transl_table=11 FT /locus_tag="BPP2928" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1290" FT /db_xref="InterPro:IPR011979" FT /db_xref="UniProtKB/TrEMBL:Q7W6I1" FT /protein_id="CAE38221.1" FT /translation="MSIAIAEKSPARGAPKRRAPAARKRALEEEARVDSFADLVDSPLI FT AMAHGVQRGLSPRLLDDAADYLQVPKSEIMAITEVKAASLSRWMRDGQALPLGESDRLA FT RVARVTKVARQVLGGDAEAVQWLNTPVPALGNVKPLSLLTSDASSRIVEDTLARAAAGV FT YA" FT CDS 8823..9200 FT /transl_table=11 FT /locus_tag="BPP2929" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1289" FT /db_xref="InterPro:IPR006696" FT /db_xref="UniProtKB/TrEMBL:Q7W6I0" FT /protein_id="CAE38222.1" FT /translation="MTDRQLIVLAALNIMVAVGAGAFGAHGLRRVVDPTLLAIWHTGVL FT YHLIHALGLFVVALLGARFGSPLLSMAGLVMFIGILLFCGSLYVLVLTGTRWLGAVTPL FT GGVAFLAAWAMVAWAAWRAPA" FT misc_feature 8823..8882 FT /note="Signal peptide predicted for BPP2929 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.888) with cleavage site FT probability 0.250 between residues 20 and 21" FT misc_feature join(8841..8909,8937..9005,9024..9092,9120..9188) FT /note="4 probable transmembrane helices predicted for FT BPP2929 by TMHMM2.0 at aa 7-29, 39-61, 68-90 and 100-122" FT CDS join(9197..9472,10788..11396) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP2930" FT /product="putative membrane protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1288 FT (pseudo) + BP1269 (pseudo)" FT /db_xref="PSEUDO:CAE38223.1" FT misc_feature 9197..9295 FT /note="Signal peptide predicted for BPP2930 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.888) with cleavage site FT probability 0.675 between residues 33 and 34" FT misc_feature join(9233..9286,9329..9397,9416..9484) FT /note="3 probable transmembrane helices predicted for FT BPP2930 by TMHMM2.0 at aa 13-30, 45-67 and 74-96" FT misc_feature 9466..9473 FT /note="Duplication due to IS1001 insertion" FT repeat_region 9474..9486 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS1001 element" FT repeat_region 9474..10780 FT CDS 9557..10777 FT /transl_table=11 FT /locus_tag="BPP2931" FT /product="transposase" FT /note="transposase for IS1001 element" FT /db_xref="GOA:Q7TTN6" FT /db_xref="InterPro:IPR002560" FT /db_xref="UniProtKB/TrEMBL:Q7TTN6" FT /protein_id="CAE38224.1" FT /translation="MLDRKLLESLGGWQGYGVERVEWPEDPGRTLSIYLKPTAKVMLCE FT QCGARCRQVHETTVRRVRDLPLFEYRVVLHVPRRRLWCEQCGGPRLERLAWLGRYQRVT FT DRLAQACSQLLQSSNVQAVARFFELGWHTVKTLDKARLRASVREPDWSKIEYLAMDEFA FT LHKGHRYATVVVDPIGRQVLWIGPGRSRETARAFFEQLPPGAAQRIKAVAIDMTTAYEL FT EIQAHSPQAEIVYDLFHVVAKYGREVIDRVRVDQANQLRQDRPARRIIKSSRWLLLRNR FT DNLDRQQAVRLDELLQANQPLLTVYVLRDELKRLWFYQRPAWARQAWNHWYEQAEQSGI FT AALNTFAQRLKGYLHGILARCRHPLNTSIVEGINNTIKVIKRRAYGYRDQEYFFLKIRA FT AFPGNAR" FT misc_feature 9647..10636 FT /note="HMMPfam hit to PF01610, Transposase, score 7.9e-128" FT repeat_region complement(10768..10780) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS1001 element" FT misc_feature 10781..10788 FT /note="Duplication due to IS1001 insertion" FT misc_feature join(10809..10877,10896..10964,10974..11042,11061..11129, FT 11157..11216,11229..11297,11325..11378) FT /note="7 probable transmembrane helices predicted for FT BPP2932 by TMHMM2.0 at aa 15-37, 44-66, 70-92, 99-121, FT 131-150, 155-177 and 187-204" FT misc_feature 11004..11369 FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6, score 2e-06" FT CDS complement(11409..12047) FT /transl_table=11 FT /locus_tag="BPP2933" FT /product="putative glutathione S-transferase" FT /EC_number="2.5.1.18" FT /note="ortholog of Bordetella pertussis (BX470248) BP1270" FT /db_xref="GOA:Q7W6H9" FT /db_xref="HSSP:1F2E" FT /db_xref="InterPro:IPR012335" FT /db_xref="UniProtKB/TrEMBL:Q7W6H9" FT /protein_id="CAE38225.1" FT /translation="MSTYELIGSRGCGSAIVEMALALANVPYTLTDLPYLKPGPGRDRL FT LSLNVTGQVPTLVLPDGEVMTESAAIVMHLHDVAPAAGLAPPPGSAERARFWNTLVRLV FT AGVYATFTYGDDPAKWTLPGDAAELLRTRVHDRRAQLWQEIERGAGAPHVLGRRFSTLD FT LYVVVMTRWRPGPPWFQSVCPRLAAAARRAAEEPNVAQVLRRHFDPPLE" FT misc_feature complement(11817..12047) FT /note="HMMPfam hit to PF02798, Glutathione S-transferase, FT N-terminal domain, score 1.5e-08" FT CDS complement(12044..13216) FT /transl_table=11 FT /locus_tag="BPP2934" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1271" FT /db_xref="GOA:Q7W6H8" FT /db_xref="HSSP:1CRU" FT /db_xref="InterPro:IPR012938" FT /db_xref="UniProtKB/TrEMBL:Q7W6H8" FT /protein_id="CAE38226.1" FT /translation="MLRVLAATIMRHGVLPALLAALAAPATAAQVASEPTRADARVTEV FT ADGLEHPWSLAFLPDGGMLITERPGRLRHLAPGGALSAPLQGVPKVAAQGQGGLLDVAL FT SPDFARDRLVYLSYAEAGEDRSGTAVGRGRLSADLTRLDDFTVIFRQQPKLSRGQHYGA FT RLVFDRQGFLFVALGENNDRPTAQDLDKLQGKVVRLHADGSVPADNPFVGHAGARPEIW FT SYGHRNPQGMALNPWNGQLWEHEHGPRGGDEINVVVRGANYGWPLATHGINYSGLPIPE FT AKGDTLPGGQEPRYWWRRSPAISGMAFYTSDRYPQWRGSLFIGALGSEELIRLQLDGER FT VVAEERLLGERKARIRDVRQGPDGGIYVLTDAAKGALWRVAPAAVSGGGS" FT misc_feature complement(13133..13216) FT /note="Signal peptide predicted for BPP2934 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.746 between residues 28 and 29" FT CDS 13341..13955 FT /transl_table=11 FT /gene="gst" FT /locus_tag="BPP2935" FT /product="glutathione S-transferase" FT /EC_number="2.5.1.18" FT /note="Similar to Escherichia coli glutathione FT S-transferase Gst or B1635 or Z2647 or Ecs2344 FT SWALL:GT_ECOLI (SWALL:P39100) (201 aa) fasta scores: E(): FT 1.3e-21, 38.16% id in 207 aa, and to Xylella fastidiosa FT glutathione S-transferase Xf1210 SWALL:Q9PE18 FT (EMBL:AE003955) (205 aa) fasta scores: E(): 3.3e-37, 51.96% FT id in 204 aa" FT /db_xref="GOA:Q7W6H7" FT /db_xref="HSSP:1N2A" FT /db_xref="InterPro:IPR012335" FT /db_xref="UniProtKB/TrEMBL:Q7W6H7" FT /protein_id="CAE38227.1" FT /translation="MKLYYMAGACSLAAHIVLEWIGKPYETHALSREALKEPAFLKINP FT LGAVPALTEGDWALTQNAAILEYLAEQAPQLNLLGDGSARSRAEVRRWLGFINSDVHKT FT FSAVFGPQRFVADAAAQEEVRASAAAMLRGLFGQLDTHLQGRSFLAGARPSIADAYLYV FT VLRWAHGKQIDLSGQDNLAAFFERMQADPAVQAALKAEGLS" FT misc_feature 13341..13553 FT /note="HMMPfam hit to PF02798, Glutathione S-transferase, FT N-terminal domain, score 2e-09" FT misc_feature 13578..13916 FT /note="HMMPfam hit to PF00043, Glutathione S-transferase, FT C-terminal domain, score 4.4e-08" FT CDS 14072..14815 FT /transl_table=11 FT /locus_tag="BPP2936" FT /product="putative aspartate racemase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1272" FT /db_xref="GOA:Q7W6H6" FT /db_xref="HSSP:1JFL" FT /db_xref="InterPro:IPR018187" FT /db_xref="UniProtKB/TrEMBL:Q7W6H6" FT /protein_id="CAE38228.1" FT /translation="MTAPTQSCYLGVLGGMGPMAGAAFALRLAALTPAQSDQQHIPTLL FT LNDPRIPDRSNARTQGGEDPLPAMIAGMRFLREAGARLIAIPCNTAHLWYEPLAAVAGC FT TVLHIIEAVAQDLRRQGLHGGRIGLMGTSATLALGLYQQTLQRQGYSCIIPEPDEVERY FT CMGSIRAVKANRLDLAYEPAAECIARLKARGADAVVLGCTELPLAVPHALRPGLGIRLT FT DSIDALALAAIEHYEADQQAQKLVA" FT misc_feature 14072..14146 FT /note="Signal peptide predicted for BPP2936 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.927) with cleavage site FT probability 0.718 between residues 25 and 26" FT misc_feature 14090..14158 FT /note="1 probable transmembrane helix predicted for BPP2936 FT by TMHMM2.0 at aa 7-29" FT misc_feature 14105..14782 FT /note="HMMPfam hit to PF01177, Asp/Glu/Hydontoin racemase, FT score 8.5e-07" FT misc_feature 14324..14350 FT /note="PS00923 Aspartate and glutamate racemases signature FT 1." FT CDS complement(14967..15605) FT /transl_table=11 FT /gene="livF" FT /locus_tag="BPP2937" FT /product="high-affinity branched-chain amino acid FT transport, ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1273" FT /db_xref="GOA:Q7W6H5" FT /db_xref="HSSP:1JI0" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W6H5" FT /protein_id="CAE38229.1" FT /translation="MEVKQGEIVTLIGANGAGKTTLLMTVCGNPRAREGVITFEGKDIT FT HAETHHIMRSGIAISPEGRRVFKDLTVAENLMMGGFFSRREEVDAGLEHVYTLFPRLKE FT RAGQRAGTMSGGEQQMLAIGRALMTQPRLLLLDEPTLGLAPLIIAQIFDIIRTIREQGV FT TVFLVEQNANKALQVADRGYVLENGRVVLHDTGANLLVNDQVRKAYLGG" FT misc_feature complement(15042..15590) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 6.1e-56" FT misc_feature complement(15225..15269) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(15546..15569) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(15669..16436) FT /transl_table=11 FT /gene="livG" FT /locus_tag="BPP2938" FT /product="high-affinity branched-chain amino acid FT transport, ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1274" FT /db_xref="GOA:Q7W6H4" FT /db_xref="HSSP:1G9X" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W6H4" FT /protein_id="CAE38230.1" FT /translation="MSETLLKVSGLTMRFGGLLAVDSVAFEVRRDEVFAIIGPNGAGKT FT TVFNCVGGFYKPTAGEIVMDGKPITGMPSHKVARHGLVRTFQNVRLFKQLTVLENLLVA FT QHTQVEARLLPGLLKLKSYRQAEAEALTRAAQWLDFMGLREFANREAGNLAYGHQRRLE FT IARCMITKPCLLMLDEPAAGLNSQEKRDLQSLIDQLRREFGVAVLLIEHDMSLIMGISD FT RILVMEHGKPITTGIPDEVRNDPRVIKAYLGEE" FT misc_feature complement(15747..16346) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 9.2e-58" FT misc_feature complement(16302..16325) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(16433..17671) FT /transl_table=11 FT /gene="livM" FT /locus_tag="BPP2939" FT /product="high-affinity branched-chain amino acid transport FT system, permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1275" FT /db_xref="GOA:Q7W6H3" FT /db_xref="InterPro:IPR001851" FT /db_xref="UniProtKB/TrEMBL:Q7W6H3" FT /protein_id="CAE38231.1" FT /translation="MTQQSPLKNATIAAVMTAVIVTPIFGLQLVRQGARTLMEPRWDLV FT ALACALVFAFQLLRPWISKPFKALKTGLPTLPSAPARGHKWLVVLLIAVAVIWPFFSGR FT SSVDIATLVLIYVMLGLGLNIVVGFAGLLDLGFVGFYAVGAYTYALLYHWGGWSFWEAL FT PFSGAVAALFGFVLGFPVLRLRGDYLAIVTLGFGEIIRLLLINLNMLTGGPDGISGLPK FT PSVLGMEMARRASTEGGQTFHEIMGWTFQNQHMVIYLYLMALALALATLFVSTRLIRMP FT VGRAWEALREDEIACRSLGLNPTRIKLSAFTLGAMFAGFGGAFFAARQGMVNPESFTFI FT ESALILAIVVLGGMGSQIGVILAAILLTVLPELAREFAEYRMLMFGLVMVLMMMWRPQG FT LLPMKRPHVELRK" FT misc_feature complement(16457..17476) FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component, score 4.6e-56" FT misc_feature complement(join(16487..16540,16577..16642,16688..16753, FT 16838..16903,17057..17107,17129..17185,17201..17266, FT 17273..17338,17369..17419,17483..17539,17585..17650)) FT /note="11 probable transmembrane helices predicted for FT BPP2939 by TMHMM2.0 at aa 7-29, 44-63, 84-101, 111-133, FT 135-157, 162-181, 188-205, 256-278, 306-328, 343-365 and FT 377-395" FT CDS complement(17671..18597) FT /transl_table=11 FT /gene="livH" FT /locus_tag="BPP2940" FT /product="high-affinity branched-chain amino acid transport FT system, permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1276" FT /db_xref="GOA:Q7W6H2" FT /db_xref="InterPro:IPR001851" FT /db_xref="UniProtKB/TrEMBL:Q7W6H2" FT /protein_id="CAE38232.1" FT /translation="MSDLIPQLTQQFFNGLSLGAIYALIAIGYTMVYGIIGMINFAHGE FT IYMIGAYVGLVTLTAIGTNSGLPLPFIIAAMLVVAIFVTGVYGYSVERVAYRPVRGSPR FT LVALISAIGMSIFLQNWVALGQGARDMAVPALVSGAVQFHMGSSFDVTVPYSRIMIIVV FT TVVLMVALTLFIKYSRMGRASRACSQDMHMANLLGIDTNRVISFTFVLGAMLAAVGGVL FT IAITIGKLNPFIGFLAGIKAFTAAVLGGIGSIPGAMLGGVLLGLAETFAAAYISSQYKD FT IVAFALLVLILLFRPTGLLGKPEVEKV" FT misc_feature complement(17686..18576) FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component, score 2.9e-69" FT misc_feature complement(join(17701..17751,17803..17868,17914..17979, FT 18073..18138,18229..18294,18331..18396,18409..18465, FT 18487..18552)) FT /note="8 probable transmembrane helices predicted for FT BPP2940 by TMHMM2.0 at aa 15-37, 44-63, 67-89, 101-123, FT 153-175, 206-228, 243-265 and 282-299" FT CDS complement(18700..19815) FT /transl_table=11 FT /gene="livJ" FT /locus_tag="BPP2941" FT /product="leu/ile/val-binding protein precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP1277" FT /db_xref="GOA:Q7W6H1" FT /db_xref="HSSP:1USG" FT /db_xref="InterPro:IPR000709" FT /db_xref="UniProtKB/TrEMBL:Q7W6H1" FT /protein_id="CAE38233.1" FT /translation="MKFSQRFTPLAVALGALAFAGAVHAADTIKIGIPQPMTGPNTQYG FT DQIQAGALTAIETINAKGGVKGKKLEPILIDDGCEPKQAVPAANRVVNSGAKFAVAHAC FT SGVTVAAVNVYEQEGIVAITPGATSPLVTDTIKPHFFFRTIGRDDQQGPFAARYIANTI FT KPKKVAVLHDKQTYGSGVATQVKDTLERNKVNVALFEGINVGDSDYSAIITKLKSAGVD FT FVYFGGYHPELGLLLRQAREQGLNVQFMGPEGTANQDLVAIAGPAIDGLLVTLPSDFTK FT LPGNEGVVKAFQDAKRDPDGAFQMPAYAAVQLLAESINAVGEDPAKVADHLHKNTFNTA FT IGKVEYDAKGDLKDFEFAVFKWDKNGKKTQL" FT misc_feature complement(18706..19761) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01094, Receptor family ligand FT binding region, score 1e-11" FT misc_feature complement(19729..19794) FT /note="1 probable transmembrane helix predicted for BPP2941 FT by TMHMM2.0 at aa 7-29" FT misc_feature complement(19741..19815) FT /note="Signal peptide predicted for BPP2941 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 25 and 26" FT CDS complement(20086..20667) FT /transl_table=11 FT /locus_tag="BPP2942" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1279" FT /db_xref="InterPro:IPR003744" FT /db_xref="UniProtKB/TrEMBL:Q7W6H0" FT /protein_id="CAE38234.1" FT /translation="MSSASRRYEPLRSGPFLLAVFCMGLVVVGSNILVQVPLNDWLTWG FT GLSYPVAFLVTDVLNRRYGPDAARRVAWFGFAAALAVSVWVASPRIALASGLAYLCAQL FT IDIRVFDRLRDQRWWRAPLISGVIGAVADTAVFFSAAFAGSDTPWVTWMLGDLAIKLAV FT NISMLAPFRALMWNLARPAEARPAQASTGR" FT misc_feature complement(20131..20637) FT /note="HMMPfam hit to PF02592, Uncharacterized ACR, YhhQ FT family COG1738, score 7.7e-06" FT misc_feature complement(join(20155..20220,20236..20301,20389..20454, FT 20563..20628)) FT /note="4 probable transmembrane helices predicted for FT BPP2942 by TMHMM2.0 at aa 13-35, 71-93, 122-144 and FT 149-171" FT misc_feature complement(20581..20667) FT /note="Signal peptide predicted for BPP2942 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.617) with cleavage site FT probability 0.287 between residues 29 and 30" FT CDS complement(20664..21497) FT /transl_table=11 FT /gene="proC" FT /locus_tag="BPP2943" FT /product="pyrroline-5-carboxylate reductase" FT /EC_number="1.5.1.2" FT /note="ortholog of Bordetella pertussis (BX470248) BP1280" FT /db_xref="GOA:Q7W6G9" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7W6G9" FT /protein_id="CAE38235.1" FT /translation="MKNDLSIAFIGGGNMAAALASGLAGKVCPAANIHVVDINADSHAG FT WRARGMSAAAAPDATLAGCRVWVYAVKPQHMREAVAGTRPWLRPDTLIVSVAAGIHADT FT LAGWLGEPGQPWQRLVRCMPNTPALVGAGMTGLAALPGVTPQDRELAGQLLTSVGEVVW FT VDGDAGLDAVTALSGSGPAYVFLFIEALIAGGRAVGLTDEQARQLALGTLAGATRLAAQ FT SDEPPAVLRERVTSKGGTTATALDVYAQGDFAGLVERAMQAAARRSRELAEEFGR" FT misc_feature complement(20730..21485) FT /note="HMMPfam hit to PF01089, Delta FT 1-pyrroline-5-carboxylate reductase, score 6.5e-75" FT misc_feature complement(21438..21497) FT /note="Signal peptide predicted for BPP2943 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.990) with cleavage site FT probability 0.967 between residues 20 and 21" FT CDS 21681..23021 FT /transl_table=11 FT /gene="ugpB" FT /locus_tag="BPP2944" FT /product="glycerol-3-phosphate-binding periplasmic protein FT precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP1281" FT /db_xref="GOA:Q7W6G8" FT /db_xref="InterPro:IPR006061" FT /db_xref="UniProtKB/TrEMBL:Q7W6G8" FT /protein_id="CAE38236.1" FT /translation="MVYNRRNPFMRSQRLALTFAAVMAAFAGASAHAATEIQFWHSMEG FT ALGDRVNGLVEEFNKQNADYQIKAVYKGNYGESMNAGIAAFRAGNAPDILQVFEVGTAT FT MMYAKGAIKPVQQMSEEVGAPIDPKQFIGAVAGYYSSPEGKLVSMPFNSSTVVFYYNKD FT AFKKAGLDADKPPKTWEELAAAGQKLKAAGQECGYTTSWPSWVQLETFSAWHNVPYATK FT DNGFAGLDARLAVDTPLHVRHLDNLAKLAKEGIFMYGGRGDEPNSLFISGKCAMITGSS FT GLRANIAKNAKFEFGTSTLPYYSDVQGAPQNTIIGGASLWVFANKKPETYKGVTKFFKF FT LASPEIAARWHQQTGYVPVTKAAYELTQKQGFYDKNPGTDVGVKQLNVETTAQSRGLRL FT GYLPQIREIEDAEIERIVAGKVPAKDGLQSIVKRGNELLEKFEKSVK" FT misc_feature 21681..21779 FT /note="Signal peptide predicted for BPP2944 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.997 between residues 33 and 34" FT misc_feature 21717..21785 FT /note="1 probable transmembrane helix predicted for BPP2944 FT by TMHMM2.0 at aa 13-35" FT misc_feature 21807..22964 FT /note="HMMPfam hit to PF01547, Bacterial extracellular FT solute-binding protein, score 3e-46" FT misc_feature 22128..22181 FT /note="PS01037 Bacterial extracellular solute-binding FT proteins, family 1 signature." FT misc_feature 22299..22328 FT /note="PS00019 Actinin-type actin-binding domain signature FT 1." FT CDS 23198..24079 FT /transl_table=11 FT /gene="ugpA" FT /locus_tag="BPP2945" FT /product="sn-glycerol-3-phosphate transport system, FT permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1282" FT /db_xref="GOA:Q7W6G7" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7W6G7" FT /protein_id="CAE38237.1" FT /translation="MEKRVVFGHKTLPYLLLAPQIIITIVFFFLPAGQAMWQSLRLEDA FT FGLSSEFVGLANFADLFSQQSYLDSFRVTAVFSALVAFVGLAVSLLLAVMADRVLRGAG FT LYKTLLIWPYAVAPAVVGVLWLFLFSPSVGILAVALNGMGVNWNPRLDGDQALILVLIA FT AVWKQISYNFLFFLAGLQSIPRSLIEAAAIDGASPARRFWTIVFPLLSPTTFFLLVVNI FT IYAFFDTFAVIDTTTQGGPGTATSILVYKVYSDGFRGLDLGSSAAQSVVLMAIVVALTV FT LQFRYIDRKVQY" FT misc_feature join(23228..23296,23417..23485,23522..23617,23660..23728, FT 23810..23878,23990..24058) FT /note="6 probable transmembrane helices predicted for FT BPP2945 by TMHMM2.0 at aa 55-77, 118-140, 153-184, 199-221, FT 249-271 and 309-331" FT misc_feature 23732..23959 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 4.4e-17" FT misc_feature 23735..23821 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS 24099..24950 FT /transl_table=11 FT /gene="ugpE" FT /locus_tag="BPP2946" FT /product="sn-glycerol-3-phosphate transport system permease FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1283" FT /db_xref="GOA:Q7W6G6" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7W6G6" FT /protein_id="CAE38238.1" FT /translation="MVERRPWLDILAHFILLCGVALVAFPIYVTFVASTQTAQEVASAP FT MSLIPGKHFVDNYMQALFAGSGGGSYGAPVGRMMYVSLIMALAISLGKIAISLLSAFAV FT VYFRFPGRMFFFWMIFVTLMLPVEVRIAPTYKVVADLGLLNSYAGLTLPLIASATATFL FT FRQFFLTVPDELVEAARIDGAGPMRFFRDVLLPLSRTSIAALFVIQFIYGWNQYLWPLL FT ITTQEDMYPVVIGIKRMISGGDSVTEWNITMATAILAMIPPALVVILMQKWFVKGLVDT FT EK" FT misc_feature 24099..24212 FT /note="Signal peptide predicted for BPP2946 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.750) with cleavage site FT probability 0.409 between residues 38 and 39" FT misc_feature join(24117..24185,24348..24416,24435..24494,24537..24605, FT 24666..24734,24837..24905) FT /note="6 probable transmembrane helices predicted for FT BPP2946 by TMHMM2.0 at aa 7-29, 84-106, 113-132, 147-169, FT 190-212 and 247-269" FT misc_feature 24597..24833 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 1.8e-17" FT misc_feature 24600..24686 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS 24999..26087 FT /transl_table=11 FT /gene="ugpC" FT /locus_tag="BPP2947" FT /product="sn-glycerol-3-phosphate transport ATP-binding FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1284" FT /db_xref="GOA:Q7W6G5" FT /db_xref="HSSP:1G29" FT /db_xref="InterPro:IPR013611" FT /db_xref="UniProtKB/Swiss-Prot:Q7W6G5" FT /protein_id="CAE38239.1" FT /translation="MATLSFRNVKKTYAGNVPVIHGSDMDVADGEFIVIVGPSGCGKST FT LMRMVAGLETVTEGEILIDDKVVNTLEPAERDIAMVFQNYALYPHMSVFDNMAYGLKIR FT RLPKDEIRKRVEAAAQILELGKLLDRRPRALSGGQRQRVAMGRAIVREPKVFLFDEPLS FT NLDAKLRVAMRLEILKLHRRLNTTSLYVTHDQVEAMTLAHRMVVMYQGVPEQIGTPMEV FT FEKPASTFVAGFIGSPPMNLLEVAVGGDGIVHTSDGIALDISPLAVPQQVRGRKVVMGL FT RPEHMLLNAQGLAAEIEMIETLGSEQLVHGRCGKHMVVVRCSTRQFSETPARVGDTLTI FT GPDGRHPLHWFEADTGRRVEGL" FT misc_feature 25086..25631 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 4.5e-66" FT misc_feature 25107..25130 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 25401..25445 FT /note="PS00211 ABC transporters family signature." FT CDS complement(26175..27302) FT /transl_table=11 FT /gene="livJ" FT /locus_tag="BPP2948" FT /product="leu/ile/val-binding protein precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP1285" FT /db_xref="GOA:Q7W6G4" FT /db_xref="HSSP:1USG" FT /db_xref="InterPro:IPR000709" FT /db_xref="UniProtKB/TrEMBL:Q7W6G4" FT /protein_id="CAE38240.1" FT /translation="MNKAFRFTPVIAALGMAAGIAMSAGAHAQTIKIAVVGPTTGQVTQ FT YGDMVREGVDTAIERINATGGVNGKKLEAVVIDDGCEPKQGPVAANRVVNDKIGFVVGH FT VCSGATIAATEIYNNEGVVMVTPSATSPAVTDGKNYEFIFRTIGRDDQQGPAAAKFILE FT KIKPKTVAVIHDKQSYGQGIATAVKDTLEKNGTKVVIFEGINAGDSDYSAVITKLKAAK FT VDFVYYGGYHPEMGLLLRQGAEQGLDAKFMGPEGVGNPDINAIAGPAVEGMLLTLPADF FT TLNPANAEIVKAFKDKKRDASGAFQLTAYAATQVIADGIKGAGSEDPTKVAQYLHANSF FT QTPIGKTSWNKQGDLNAFEFEVFTWHKDGSKTSYK" FT misc_feature complement(26181..27245) FT /note="HMMPfam hit to PF01094, Receptor family ligand FT binding region, score 8.2e-20" FT misc_feature complement(27219..27302) FT /note="Signal peptide predicted for BPP2948 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.989 between residues 28 and 29" FT CDS 27537..28148 FT /transl_table=11 FT /locus_tag="BPP2949" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1286" FT /db_xref="InterPro:IPR010662" FT /db_xref="UniProtKB/TrEMBL:Q7W6G3" FT /protein_id="CAE38241.1" FT /translation="MRLQPIIVPGWQGSGPGHWQTHWSRTLPHAVRLQQRDWHQPQRAE FT WVAALAAAVDAAPTPVLLVAHSLGCLVSAALPIALRAKVAGALLVAPADVERPGAPAAI FT AAFGPVPRQSLPYQSVVIASDDDPYCRLERARQFAQDWGSRLVVLQGAGHINADSQLGA FT WPQGLKQLAALRRRACWRISPPAEKIPPVPAGIMAPPRYG" FT CDS 28697..36280 FT /transl_table=11 FT /gene="wcbR" FT /locus_tag="BPP2950" FT /product="putative type I polyketide synthase" FT /note="Similar to Burkholderia mallei putative type I FT polyketide synthase WcbR SWALL:Q9AI30 (EMBL:AF285636) (2546 FT aa) fasta scores: E(): 0, 44.23% id in 2600 aa, and to FT Rhizobium meliloti fatty acid synthase transmembrane FT protein RkpA or R00577 or smc02273 SWALL:Q92S51 FT (EMBL:AL591784) (2504 aa) fasta scores: E(): 2.4e-112, FT 35.97% id in 2527 aa" FT /db_xref="GOA:Q7W6G2" FT /db_xref="HSSP:1KAS" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7W6G2" FT /protein_id="CAE38242.1" FT /translation="MAKRIAVIGLSFRFPRTNTADYWRDLLQGKDLVSQVDESRWSSDA FT YFHPQRDHPGTAYTRSAGSLGDISGFDADFFGISPREAALMDPQQRLLLELCWEGFENA FT GLRPSRVRGSDCGVYIGIASADYAYRLADDLEVVDASIATGNTSSIAANRLSYVFDLRG FT PSMAVDTACSSSLLAFHQACRAIAAGDATMAVAGGVSLHLHPYGFVTFSKASMLSPRGR FT CRVFDASADGYVRAEGGGLFILKDYDAALADGDPILAVVAGTAVNTDGRKSGLTVPSAD FT AQARLLSQAYAQAGIDPRQIDYLEAHGTGTPVGDPIETRAIGMALGRQRAAHAPLPIGS FT VKSNQGHLEAASGVAGLVKALYCLRHRKVPATIGVDEINPNIDCAAWNIDIVRQRRALP FT ERGTLTVGVNSFGFGGANAHVILQTPPDEPHAPLATLATTSAIPLVISGKQPAALKAAA FT RDMARHLRSQPSRALYDIAYQAALRRDWHEERAVVYGATSEAIAQALTALADESGPRRL FT VASGRAVPAAQGPVFVYSGNGSQWAGMGERLMHNPVFAEAVHEIDAYFHPLAGYLLGDA FT LRAAPGDCRYDSTEYAQPALFAMQVGMTRMLNQRGIVARAVAGHSVGEVAAAWASGALT FT LADAVQVIFHRSRLQGLTRGRGAMTAVGVDGGAALALIAELGLSRVLSVAGHNSSRGAT FT IAGNPDALAVLENALRERRAFQRRLDLDYAFHSPAMDGISGALHEALAGLTPGEAEIPF FT YSTVAGACMAGAALDANYWWRNVRQPVRFDQAMAALIEQGENIFVEIGPHPVVRGYIND FT ALKQANVEGRVIVTATRGEDDPQRVHDAAGQVVASGAAPQWQTLFPWPGRHVGLPAYAW FT QRERHWHPLTPSGIGLLERRRVHPLLGYPLRQHESTWENQLDCSTHPALADHVVGQAVV FT FPGAGFAEMALAAAQARHEDGEYVELEDLEIHAPLLLAAGAAKVTRCAVDPQDGRWHVR FT ARDQGSDGAWTTHATARILSEPGAALLGERAPALPERPADFDAASHLALTESVGLSYGP FT AFRAVERGWLQDDGDIVAQLRMPEPIATELAAHHLHPAVFDSVLQLIIHWFRDDAQRDS FT GLTYVPARIGRLAWRRAAGPVHSARVRLLRRNPHSLMAEFALFDARGKQIAHAREAQFR FT SIRLRKGAGEALDFLHYVGVPRPHPHTDAPPPLQVADGERAILQAIDADSLKRYAYEVD FT PLLDSLCRQFTCEALHALADDDGLLSAATVTRCRDAADGGAPLLEQLLRQAQEDGQLDA FT TPSGWRLRAADPQEPRATDIWNALVREYPEHFRVAQAVGRVGLSLPALLRGERTLDEVH FT PPALTPGSLTAQLLPAGQQRRLGQHIAGWLATAVAQLRGDARLRVLECGADGPAFGLDY FT YQALDDDRIDCVYRSSRSAAIDEAERLRERCPDLSVQAIDHTEPPAGRFDLAILHANWP FT TLDEARQALGHVRHCLAPGGVLLLLANQPTAWLDFIFGARGQWWSDSVAGDATPALQPA FT AFWRRELQALGCACEPAADFLPDTRSGPYLLAATVATVADGDSGDTVDAPPARRWLLLA FT DAADAAVARPLAAQLRAAGQQVITAGDAPEDDAGLALWLQEAAKSGPVDGVIHAAGLAA FT TAHIDAAAMLRHQVRRCALAAATLQAGPPLADAPLWLLTRGAAQHLAGDDAVAPAADSA FT LWGYGRTLMNESNAVRMLDLPRNMADLPLDALTRELLWPDTEQELVLAAGGSRHAPRLR FT LAQPPAPRADCPAEAPQDAAAVQLGFELPGQLRALAWRHAPLPAPAGGQLEVAVAATGL FT NFRDVMYALGMLSDVAIENGFAGPTLGLEFAGTVTRAGAQVQGYAAGDAVVGFGPASFG FT DRVLTTPAAVARVPAGMSLEAAATIPSTFFTAYYALHHLAQLEPGEKVLIHGAAGGVGI FT AAIQYAQWRGAEIHASAGTPDKRDFLRLLGVQHVYDSRTLSYADEVLANTGGAGVDVVL FT NSLASEAIHRNLVVLKPFGRFLELGKRDFYENTRIGLRPFRNNISYFGIDADQLMARRP FT ALTQRLFADMMALFEAGALHPLPYTVFHADQVVDAFRHMQQARQIGKIVVAGMDEVRPA FT PATAARPDAALALDPRASYLVTGGLGGFGLRTAQWLADKGARHLVLASRRGATEPDTLA FT ALAALRRQGVAVHAVACDVTDRAALAALLAGIAAETPLRGIVHAAMVIDDALVRNTDAA FT RIERVLAPKLLGAQHLDALTAGLALDFFVCFSSATTLFGNPGQSNYVAANAWLEAFCRA FT RRERGLPATCVAWGALDDVGYLARNVKVKDALAGRMGGQALRSDVALQALEDILLADRS FT DLGVLELDWNALARFLPSAASPKFGDVARRRAQAGGPDLNDEDIRHLAATLDDAALQAR FT LVEILKAEVGEILRVPMDRLDASRSVYDMGLDSLMGVELMVALENRCGLKLPVMALSES FT PTIEQLAERLVALLRGESDMPADATAAQVRQVAAQHAADVPADSLAEFAADLDATAPRQ FT KMIH" FT misc_feature 28697..58242 FT /note="locus encoding proteins involved in the biosynthesis FT and export of capsular polysaccharide" FT misc_feature 28700..29443 FT /note="HMMPfam hit to PF00109, Beta-ketoacyl synthase, FT N-terminal domain, score 7.3e-106" FT misc_feature 29183..29233 FT /note="PS00606 Beta-ketoacyl synthases active site." FT misc_feature 29468..29974 FT /note="HMMPfam hit to PF02801, Beta-ketoacyl synthase, FT C-terminal domain, score 4.7e-75" FT misc_feature 30284..31249 FT /note="HMMPfam hit to PF00698, Acyl transferase domain, FT score 4.2e-80" FT misc_feature 32399..32419 FT /note="PS00290 Immunoglobulins and major histocompatibility FT complex proteins signature." FT misc_feature 34049..35005 FT /note="HMMPfam hit to PF00107, Zinc-binding dehydrogenase, FT score 6.1e-66" FT misc_feature 35918..36118 FT /note="HMMPfam hit to PF00550, Phosphopantetheine FT attachment site, score 1.1e-13" FT CDS join(36277..37458,37458..37475) FT /pseudo FT /transl_table=11 FT /gene="wcbT" FT /locus_tag="BPP2951" FT /product="putative aminotransferase (pseudogene)" FT /note="Similar to Rhizobium meliloti acyl-transferase FT transferase protein RkpG or R00576 or Smc02272 SWALL:Q92S52 FT (EMBL:AL591784) (471 aa) fasta scores: E(): 1.8e-62, 47.19% FT id in 392 aa, and to Burkholderia mallei putative acyl-CoA FT transferase WcbT SWALL:Q9AI28 (EMBL:AF285636) (439 aa) FT fasta scores: E(): 5.7e-85, 58.74% id in 383 aa" FT /db_xref="PSEUDO:CAE38243.1" FT misc_feature 36682..37470 FT /note="HMMPfam hit to PF00155, Aminotransferase class I and FT II, score 2.9e-06" FT misc_feature 37249..37317 FT /note="1 probable transmembrane helix predicted for BPP2951 FT by TMHMM2.0 at aa 325-347" FT CDS complement(37472..39028) FT /transl_table=11 FT /gene="wcbQ" FT /locus_tag="BPP2952" FT /product="putative capsular polysaccharide biosynthesis FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1654" FT /db_xref="GOA:Q7W6G1" FT /db_xref="InterPro:IPR017849" FT /db_xref="UniProtKB/TrEMBL:Q7W6G1" FT /protein_id="CAE38244.1" FT /translation="MAETFWLALAPAWAGGLVLSWALEALLRPPVQPPWRRPAWTLLLH FT AGVWTLLFALELALFRRPYFGAINVLAIEAVLVLVSAAKARVLREPFVYSDFEYFTDAL FT RHPRLYLPFLGWPAALLLACGYGLALWAGLALEPSATGARTAAWAAHAAPAPFWGATLA FT LAAAGAALAVLAGHRDAGLTYEADQDLRRLGLVATLWLYGRAERQPWTPAMRSGPFGAA FT PAAAGAGPLPHLVSVQSESFFDARRVFGTLKPEVLAGLDALRAEALEHGQLEVAAWGAN FT TVRTEFAFLTGLAASALGVHRYNPYRRLRQPQPSLASHLRQRGYRTVCVHPFHASFYGR FT DRVMPWLGFDEFVHLDAFADAPRAGPYVADAALARYVAERLAGQGSQPLYVHVITMENH FT GPLHWESVDAADAAAVLDGPLAPGCADLVAYARHLRNADAMFTGLAAAMRGLSRPAGLC FT VYGDHVPIMAEVYRRLGEPDGRTDYLIWQAGGQGGAAPGLRRVDELAQVFLRHMGLAPP FT G" FT misc_feature complement(join(38498..38563,38624..38689,38768..38833, FT 38849..38914,38960..39013)) FT /note="5 probable transmembrane helices predicted for FT BPP2952 by TMHMM2.0 at aa 5-23, 38-60, 65-87, 113-135 and FT 155-177" FT misc_feature complement(38963..39028) FT /note="Signal peptide predicted for BPP2952 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.701) with cleavage site FT probability 0.627 between residues 22 and 23" FT CDS complement(39021..39794) FT /transl_table=11 FT /gene="wcbP" FT /locus_tag="BPP2953" FT /product="putative oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1655" FT /db_xref="GOA:Q7W6G0" FT /db_xref="HSSP:1FDS" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7W6G0" FT /protein_id="CAE38245.1" FT /translation="MRSNWPACVLLTGASGEIGRALALEYAAPGVRLILQGRRLGRLDE FT LAGLCRERGATLSVAAFDIRATERLLAWLEEVNATHPPDLAIINAGVNIDIGPDRAGER FT WEDVCMVMDTNLRAAQATVHGLLPAMRARGQGQIALMSSLAAWRGLPDTPSYSASKAAV FT KAYGEALRDWLAPQGVRVNVIMPGYVASPMCAAMPGPKPFLWPPGKAARAIRRGLAANR FT ARISFPFPLNLGCWFLGLAHPAVSSRLLRWLGYGG" FT misc_feature complement(39027..39782) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase, FT score 3.4e-23" FT misc_feature complement(39282..39368) FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT misc_feature complement(39726..39794) FT /note="Signal peptide predicted for BPP2953 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.970) with cleavage site FT probability 0.957 between residues 23 and 24" FT CDS complement(39791..41011) FT /transl_table=11 FT /gene="wcbO" FT /gene_synonym="kpsS" FT /locus_tag="BPP2954" FT /product="capsular polysaccharide export protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1632" FT /db_xref="GOA:Q7W6F9" FT /db_xref="InterPro:IPR007833" FT /db_xref="UniProtKB/TrEMBL:Q7W6F9" FT /protein_id="CAE38246.1" FT /translation="MSASFLFLQGVCSPFFDRLGRALRERGHAVRRVNYTVGDAAYWRG FT GQAYAYRGAAQACGDFYAELLERHAVSDIVLFGDRRPVHRPAVALARARGVRVHVFEEG FT YFRPHWVTLERGGVNAHSSLPRDPAWYRASAARVPQASPRAFRSPFWLRAWHDVAYHAC FT NAWNPLLFPRYRTHAPHGAAREYAAYVRRALRLRARRAEDARAMADLAARRARFFLLPL FT QLDSDAQIRDHSPYGDMREVQDAVMASFARHAPPDCLLVVKNHPLDPGFVDQRRVTAET FT ARRHGLQRRVRYLETGHLPGLLAHAAGVVTVNSTVGSAALAAGCATLALSQPIYAMPGL FT TCQHTLDDFWRDPTPPQAALFAAFQAVVIHATQVNGGFYCAPGIDLAVANAVGRLTAPR FT SALEELL" FT CDS complement(41025..42902) FT /transl_table=11 FT /gene="wcbA" FT /gene_synonym="kpsC" FT /gene_synonym="lipA" FT /locus_tag="BPP2955" FT /product="capsular polysaccharide export protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1631" FT /db_xref="GOA:Q7W6F8" FT /db_xref="InterPro:IPR007833" FT /db_xref="UniProtKB/TrEMBL:Q7W6F8" FT /protein_id="CAE38247.1" FT /translation="MPYIALEDGFLRSFGTGRHFPPLSLVVDRLGIYYDATRESELECL FT LASSRTLLDGIEDAVPEAMELVRERRLSKYNHGGFLATGVPADGRRRVLVVDQTEGDMS FT VTLGCAEAATFEAMLAAARAENPGALICVKTHPEVAAGDKSGYLSRVTDDADTLALRHD FT MNPLALLEQMDRVYVVSSQMGFEALMLDKPVICFGMPWYAGWGVTDDRQRCERRGRARS FT VEELFAGAYFHYTRYLDPVLHRRGTIFDVIDWLTRQRDMAQRLPSRVIGVGMRRWKAAA FT LAPMLALKPGQAVFAADAARARDLRPAAGDALVHWGARAPAGVAELAEQSGCAVLAVED FT GFLRSVGLGSDLIRPLSLALDGRGIYFDPRQPSDLEHELNRGGFSLGELASAARIRALV FT VAHGITKYNVAQPQPADWPARGREIVLVPGQVEDDASVRLGCDEVRTNLDLLAAARAAH FT PDAYIVYKPHPDVVSRNRRGRVALREARRHADHVESALSVVSCIQACDVVHTMTSLTGF FT DALLRDKRVVTYGKPFYAGWGLTEDRAADWPRDRRTRRLSLDELVAGTLLRYPLYWDWE FT LRGYTTCEAVLTHIFETRERLQREGRLQGLRAGYARRQVRKLQTLWLAR" FT CDS complement(43026..44051) FT /transl_table=11 FT /gene="wbpP" FT /gene_synonym="vipB" FT /gene_synonym="tviC" FT /locus_tag="BPP2956" FT /product="capsular polysaccharide biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1630" FT /db_xref="GOA:Q7W6F7" FT /db_xref="HSSP:1ORR" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7W6F7" FT /protein_id="CAE38248.1" FT /translation="MTNRFETTCAQLRAQPQKWLVTGCAGFIGSNLLETLLGLDQAVVG FT LDNFATGHQHNLDEVRAAVTPEQWARFTFIEGDIRDLAACQRAVQGVDRVLHQAALGSV FT PRSLKDPITTNEVNIGGFLNMLVAARDAQVQAFVYAASSSTYGDHPDLPKVEERIGNPL FT SPYAVTKYVNELYADVFARSYGFSSVGLRYFNVFGKRQDPDGAYAAVIPKWTAAMIKGE FT DVVINGDGQTSRDFCFVENAVQANLLAAMAAPEGANQVYNVAYNARTTLTELFEHLRRA FT LAGQGVSYEKAPVYAEFRAGDVRHSQADIGKAGKLLGYEPAYDILRGLEAAMPWYKQFL FT R" FT misc_feature complement(43032..43997) FT /note="HMMPfam hit to PF01370, NAD dependent FT epimerase/dehydratase family, score 1.5e-115" FT CDS complement(44063..45352) FT /transl_table=11 FT /gene="wbpO" FT /locus_tag="BPP2957" FT /product="capsular polysaccharide biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1629" FT /db_xref="GOA:Q7W6F6" FT /db_xref="InterPro:IPR017476" FT /db_xref="UniProtKB/TrEMBL:Q7W6F6" FT /protein_id="CAE38249.1" FT /translation="MPKKFSNPADVHLAVVGLGYVGLPLAVEFGKKRPVIGFDINERRI FT AALKAGHDHTLEVEDDELAQAGQLSYTAEREELGKANVFIVTVPTPIDEYKQPDLTPLV FT KASETIGAVLKRGDIVIYESTVYPGATEEDCVPVLERVSGLKFNQDFYAGYSPERINPG FT DKAHRVNTIKKVTSGSTPEVAELVDQLYNEIITAGTHKASSIRVAEAAKVIENTQRDVN FT IALINELALIFNKMGIDTEAVLQAAGTKWNFLPFRPGLVGGHCIGVDPYYLTHKAQSIG FT YHPEIILAGRRLNDSMGGYVVSQLVKAMAKRRIHVEGARVLLMGLTFKENCPDLRNTRV FT VDIVRELGEYHVDVDVYDPWVDPAEAEHEYGITPVAKPAAGAYDAVILAVSHHQFVEMG FT AEAIRKFGKAEHILYDLKYVLAPDQADLRL" FT misc_feature complement(44105..44389) FT /note="HMMPfam hit to PF03720, UDP-glucose/GDP-mannose FT dehydrogenase family, UDP binding domain, score 2.8e-31" FT misc_feature complement(44456..44740) FT /note="HMMPfam hit to PF00984, UDP-glucose/GDP-mannose FT dehydrogenase family, central domain, score 4.3e-44" FT misc_feature complement(44765..45322) FT /note="HMMPfam hit to PF03721, UDP-glucose/GDP-mannose FT dehydrogenase family, NAD binding domain, score 2.8e-71" FT CDS complement(45375..46472) FT /transl_table=11 FT /gene="wza" FT /gene_synonym="wcbC" FT /locus_tag="BPP2958" FT /product="putative capsular polysaccharide export protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1628" FT /db_xref="GOA:Q7W6F5" FT /db_xref="InterPro:IPR019554" FT /db_xref="UniProtKB/TrEMBL:Q7W6F5" FT /protein_id="CAE38250.1" FT /translation="MNHRLIRCLSIALLALLSGCSILSGSGPTRSAIMDGGSTDATGAK FT PGSYDLVDLRADTIAPYVLVKAVSKDGATSDGYVGNMRVMPGDVLRILVADSMETGLFA FT PLAAGGTVFEAVRVAADGSISLPYAGRLKVQGKSLAQIEQLVKGSLRNTAAVQPQVMVD FT LADDRSNSVLVAGAVPRPGRFGGNKGPLTALDAITQAGGSTLPAYQADVVIRTGSKVQR FT IPYQQLLNGRNVAVEPRSELVVEPNLKRFVAMGALTKPGLHELPSNQTNLLDALGVAGG FT LNDRAADATGVFVFRLDGRNADGRPRPTVFRLNMRNPESMFLAKQFELLPEDVVYVSNA FT PMYEWEKIITPIVQVLIVGQRVGTY" FT misc_feature complement(45381..46469) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02563, Polysaccharide FT biosynthesis/export protein, score 7.6e-06" FT misc_feature complement(46380..46472) FT /note="Signal peptide predicted for BPP2958 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.533 between residues 31 and 32" FT misc_feature complement(46392..46457) FT /note="1 probable transmembrane helix predicted for BPP2958 FT by TMHMM2.0 at aa 5-27" FT misc_feature complement(46413..46445) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(46469..47359) FT /transl_table=11 FT /gene="vipC" FT /locus_tag="BPP2959" FT /product="capsular polysaccharide biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1627" FT /db_xref="UniProtKB/TrEMBL:Q7W6F4" FT /protein_id="CAE38251.1" FT /translation="MTMPPKLFVLGSCRVHRPARLLHDGGLVQPLTAGISGYIHSTREA FT VQRVQWLADRTRPDSQLLPFMFPAGRTPVVTPARADELAQADAVLVEAASERSVSVNGV FT FLQKNLVVKHLVRELGDEGRNWWRSLVRAGEVAPEAYEAVAGLYRDQAEETVLAGGLRV FT LREARCAEDSEAVVRADLMYLALRLGKPVLVVTHVDAERADGRRIAARVRHVARIKAAA FT RGLHQVHVIDPLDAAPDWPSARLLASDGADMNHYSPEFEPVLAGYMHTRIRAALAASSG FT ALAPSQFLPEYQDGP" FT CDS complement(47356..49440) FT /transl_table=11 FT /gene="wbpT" FT /locus_tag="BPP2960" FT /product="capsular polysaccharide biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1626" FT /db_xref="GOA:Q7W6F3" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7W6F3" FT /protein_id="CAE38252.1" FT /translation="MFSFLSRIRKPRRADTAAGPTGGPASGPTILDLLEAALAEPGESE FT EAGRELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDE FT GLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS FT WDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA FT RKLTRRLVDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRRNAEYDAGPESFV FT GPVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGAD FT FFAATLRDAGIPVSVYSDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSS FT VPSVVHIWQDGSIFACALAALLAGVPRIVLSVRTMPPVDRPDRYRVEYDIIYSELLKMR FT GVALSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSVQDDACTAMMAQFDARTSDAR FT FTVGTVMRVDDNKRPFLWVEAAQRFAASHPNVRFIMVGGGPLLESVREFAQRLGMGERI FT LFTGLSRRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQEGVT FT GLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWASARFSLNQMIASTVRCYQMP FT " FT misc_feature complement(47422..47931) FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1, score 1.8e-20" FT CDS complement(49472..50641) FT /transl_table=11 FT /gene="wcbD" FT /gene_synonym="kpsE" FT /locus_tag="BPP2961" FT /product="capsule polysaccharide export inner-membrane FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1625" FT /db_xref="UniProtKB/TrEMBL:Q7W6F2" FT /protein_id="CAE38253.1" FT /translation="MTSTEKTYTGPRLPGMTPGKPANYLRWSAIALIGIPGVLLALYLF FT FIASDQYVSEARFGLRAGSQMQQASANRDGHSSMGSGAMATELFVDSFAVVDYVKSRQI FT VQELDKELNLREMWSKPMIDFWYGMNQDETEEGLWRQWNRMVDIEFDMSTGAIILRVRA FT FSPEESLQLAQAILQASEKLVNQMSAKSREDSVDFARVEVGIAEKRLAQARVQVQDLRA FT RTGVLDPVKEAEANLQLAAKVRGDVATAAAELDAMGRGGLRSGPAYERVKARHEALMRQ FT LKDLNDHQISGGRSENGNTLSKLLREYESAETERQFAEAYYTGALKTLEDARGLAARQV FT LYTVIASQPQLADESLYPRRFTDTALGLLGLFILWIVAVLVVYAVKDHA" FT misc_feature complement(join(49487..49543,50501..50566)) FT /note="2 probable transmembrane helices predicted for FT BPP2961 by TMHMM2.0 at aa 25-47 and 366-385" FT CDS complement(50683..51420) FT /transl_table=11 FT /gene="kpsT" FT /locus_tag="BPP2962" FT /product="polysialic acid transport ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1624" FT /db_xref="GOA:Q7W6F1" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W6F1" FT /protein_id="CAE38254.1" FT /translation="MMETAMDQDTIISLRNVCKGYRSKKGIRRILDDVSFDFRGGENLA FT ILGGNGSGKSVLLRMICGMELPDSGTVQRAVSISYPLGFAGGISSNMTGRDNVRFIARI FT YGCDVPDVERFVYDFSELGRSFDLPVVTYANSMRARLSYGISMALRCDVYVVDEMAAVG FT DVNFKRKCLEVFAERSRGATIIMAANAPTTVRRFCSHGVIMQHGTMAHYGPLDETIARY FT TQSAPAPAAEAEPVVDTVDAEQS" FT misc_feature complement(50800..51300) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.5e-10" FT misc_feature complement(51256..51279) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(51417..52187) FT /transl_table=11 FT /gene="kpsM" FT /locus_tag="BPP2963" FT /product="putative polysialic acid transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1623" FT /db_xref="GOA:Q7W6F0" FT /db_xref="InterPro:IPR013526" FT /db_xref="UniProtKB/TrEMBL:Q7W6F0" FT /protein_id="CAE38255.1" FT /translation="MSSALTVQARVIGSLIFRETRVRFGGTRLGYLWALIEPILHVAVL FT STIYVVWGRQAPVGNLQMFFITGIMPFFLFSHTSSRLARSISSNASLLRLPPITNMDIV FT FAKALLQALTWVAVFAILLFLVMLGGKLILPQRLEECAAAALFTFLLGFGVGLINAVLN FT MLFKSWEHLYSALTRPLYLLSGVFYLVDALPEQARRVLVWNPLVHAIEWFRAGYFTHFS FT SLTLDRGYLIKWAVGSVVLGLCLERAMRRRLHTR" FT misc_feature complement(51426..52184) FT /note="HMMPfam hit to PF01061, ABC-2 type transporter, FT score 3.7e-38" FT misc_feature complement(51546..51659) FT /note="PS00890 ABC-2 type transport system integral FT membrane proteins signature." FT misc_feature complement(join(51699..51764,51810..51875,51939..52004, FT 52035..52100)) FT /note="4 probable transmembrane helices predicted for FT BPP2963 by TMHMM2.0 at aa 29-51, 61-83, 104-126 and FT 141-163" FT CDS 52512..53825 FT /transl_table=11 FT /locus_tag="BPP2965" FT /product="putative glycosyl transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1620" FT /db_xref="GOA:Q7W6E9" FT /db_xref="InterPro:IPR001173" FT /db_xref="UniProtKB/TrEMBL:Q7W6E9" FT /protein_id="CAE38256.1" FT /translation="MLRTALLNIYQKRVQALTSRLPLAQLLARAADNPALLNRLGLFQS FT AAAVPARGAEQGLCRARAALECSHAARRPDPARLRARVSDHARRQYALTLARHDPESAR FT QWLAPTDWELDLALDLAAGRADLALHKARKSASNISKSKNLHEILAAAHTCLGDFSAAR FT NNLSQLLTDSRIYVPPGDTPLRPADFIGLAPISPRPVAAGAPLISVIICARDAAPYINN FT ALQSIQAQTYPNIEIIAIDDGSTDNTFQHLSAAAAQNPRINIARTKNHGVYAARNMALQ FT RAKGEFITFLDADNIMLATRLQDQAALLQASGACAAVSRLLRLTADGQLAAPRVFPFVR FT HNPCSLMIRRDALAVIGQFEEMRFGADEEYEHRMQVLLGFHSIARSRAVQTVALHRPQS FT LTQHGATGLGSDQGRQRRIAYRETWMRRHASLAPLRTP" FT misc_feature 53133..53582 FT /note="HMMPfam hit to PF00535, Glycosyl transferase, score FT 5.3e-32" FT CDS 53852..55936 FT /transl_table=11 FT /locus_tag="BPP2966" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1619" FT /db_xref="UniProtKB/TrEMBL:Q7W6E8" FT /protein_id="CAE38257.1" FT /translation="MEHDNNTVRHMSAPAARRAAAPDRLRQLTQENELAYSRLEQERAA FT RVQAEKDLAGVKALLRETNQQLAKQRRTLTWQFGEAVTRARTLKDYVLLPYRLIKLSED FT HRRQSRHAPVVRKHASAALPAETASAIKEALEYVKRVRSPEVILWIGRQPWPAEVRAKV FT FCEVAKWARTSYPQIAEQIVQQLLGLDPAAPHVRQLAFSLYDAGIVDASAQLLRAARTA FT GATFSTAERLRAERIEHAQGILAQSIEPAARGDYTFDFDAQGPIVILSPVSILQGRNAA FT SNALHRFALSMQARYGDTMVISLAAQHAESADAAPGQQADAALHARTGLVVDGVAYRHA FT PAISRQTPSFQDVCAAMAETVLAATVRQQPRAVLAWDDAYCALGASAAAQTLRVPYGLV FT LQSLDFFQKTAANHLLSERARVDLNLLTLAARQADLLALGSPALQGALENLLDGSRPVA FT LVPPLPLPPMNHRKEAPPDLAATLRRLEGKRVFAVTEDEPAVATARALIDLYAEISFVQ FT PDAVLLVMSNGKAAAAMRHHAVAIGLQEGQVVFAPPASDAISREQLLRRVEIALFPYVD FT NRAEVSLVPSAAALLECMALGVCPAVGPAPAYAAHVEAGRNGVPIDLNAPAAETAAHLQ FT QVLGEAGELGKRARESVQRDLPWHDYDEAIGALLLQAATPQPHIPGRRAEPQLLHLKVS FT " FT CDS join(56074..57138,57142..58242) FT /pseudo FT /transl_table=11 FT /gene="tviD" FT /locus_tag="BPP2967" FT /product="putative capsular polysaccharide biosynthesis FT protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1618 FT (partial) + BP1617 (partial)" FT /db_xref="PSEUDO:CAE38258.1" FT variation 57139..57141 FT /note="In-frame TAG stop codon in parapertussis; TAC in FT pertussis and bronchiseptica" FT CDS complement(58381..58941) FT /transl_table=11 FT /gene="dps" FT /locus_tag="BPP2969" FT /product="putative DNA-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1616" FT /db_xref="GOA:Q7W6E7" FT /db_xref="HSSP:1JI5" FT /db_xref="InterPro:IPR012347" FT /db_xref="UniProtKB/TrEMBL:Q7W6E7" FT /protein_id="CAE38259.1" FT /translation="MLRSSVVFLTCFHPLDKEHYMAKPTKNSSAAPRINIGISDKDRAA FT ITGELSKLLADSYTLYLMTHNFHWNVTGPLFNTLHNMFMAQYTEEWNALDSIAERIRAL FT GHYAPGTYREYAKLSSIAEPDSVPDALEMVRMLVKGNEAVAKTARAAFDKADAANDQPT FT ADLLTQRLDVHEKNAWMLRSLLQ" FT misc_feature complement(58387..58794) FT /note="HMMPfam hit to PF02047, , score 5.6e-48" FT misc_feature complement(58618..58662) FT /note="PS00819 Dps protein family signature 2." FT CDS complement(58980..60494) FT /transl_table=11 FT /locus_tag="BPP2970" FT /product="probable probable aldehyde dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1615" FT /db_xref="GOA:Q7W6E6" FT /db_xref="HSSP:1CW3" FT /db_xref="InterPro:IPR016162" FT /db_xref="UniProtKB/TrEMBL:Q7W6E6" FT /protein_id="CAE38260.1" FT /translation="MANQTAQVAHWIGGQAAYGAEHGLQDIHDPATGEVAAQVGLGGGD FT TVAQAVAAARAAQPAWAAKSPLHRARVLNRFLALLEDNKETLARMILREHGKVISDARG FT EVMRGIEVVEFACGAPELMKGAMSINVGGGIDNWVQREPLGVVAGITPFNFPVMVPLWM FT MPMALATGNAFVLKPSPLDASPSLALAEMLGQAGLPAGVASVVQGGVQAVNALIDHPDV FT KAVSFVGSTAVARQIYERSAREGKRVQALGGAKNHLVVMPDADPEGAADALVGAAFGSA FT GERCMAISVAVFVGGAAEAVMPHILRKARALKVRRGMQEDAEMGAIVSAAARDRIAAYI FT ASGVDEGASLLLDGREIAAADCGEGCGNGYWLGPTVFDRVQPSMRIYREEIFGPVLACV FT HVETLEQAIDLINGHDFANGVSLYTDSGTAARAFVQGIEVGMVGVNVPIPVPAAWQGFG FT GWKQSLFGDLHVYGEEGVRFYTRQKSVMQRWAAKAAGMSFAMPRSG" FT misc_feature complement(59028..60446) FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family, score 2.2e-146" FT misc_feature complement(59628..59663) FT /note="PS00070 Aldehyde dehydrogenases cysteine active FT site." FT CDS 60632..61519 FT /transl_table=11 FT /locus_tag="BPP2971" FT /product="probable LysR family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1614" FT /db_xref="GOA:Q7W6E5" FT /db_xref="HSSP:1IXC" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W6E5" FT /protein_id="CAE38261.1" FT /translation="MLAVLADTRSFTAAAQRLGVSKSLISLRMKALEQELGVSLLLRTT FT RSVRPTEAGALLVERARPALDTLEDSLGEVRNLARAPRGRLRLTAPVALGRQHLGIWLA FT RLGQHFPDIALEVYLSDRFVNLRQEGYDFALRHADQVSDAYVSKRLCATRAHLVASPAY FT LARHGRPAHPSELARHRCLLYRGDERSPQWSFAPRQGRGAAVHVKPVDCLSVNNSELLR FT ESAAHGLGIAMVPDFSLGDCADLEPVLPQWDCYAGFGRSLYLLKPFSATPTKAHRVVEQ FT ALAEHFRPGFATPA" FT misc_feature 60632..60796 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 7.2e-15" FT misc_feature 60866..61495 FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 1e-34" FT CDS complement(61534..62487) FT /transl_table=11 FT /locus_tag="BPP2972" FT /product="probable LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1613" FT /db_xref="GOA:Q7W6E4" FT /db_xref="HSSP:1I69" FT /db_xref="InterPro:IPR005119" FT /db_xref="UniProtKB/TrEMBL:Q7W6E4" FT /protein_id="CAE38262.1" FT /translation="MTLTELKYIVAVARERHFGRAAEACFVSQPTLSVAIRKLEDELGV FT TLFERGGTEVGVTPIGQRIVAQAQKVLEESASIKEIARQGHDPLAGPLRVGVIHTIGPY FT LLPRLVPEQIARTPQMPLLLQENFTVRLVELLRQGEIDCAIMALPLPEAGLVMQPLYDE FT PFVVAVPHDHEWAQRKAIDAQDLKQQTMLLLGSGHCFRDQVLEVCPELSRFSASSDGIQ FT RTFEGSSLETIRHMVAAGIGVTVLPFTAVPNPPQPKSLLRYLPFDGETPERRVVLAWRR FT SFPRLAAIEALAQAVYACGLPGVRMLDEEAASAQVD" FT misc_feature complement(61594..62232) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 1.1e-52" FT misc_feature complement(62302..62481) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.6e-24" FT misc_feature complement(62347..62439) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS complement(62539..64530) FT /transl_table=11 FT /gene="recG" FT /locus_tag="BPP2973" FT /product="ATP-dependent DNA helicase" FT /EC_number="3.6.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP1612" FT /db_xref="GOA:Q7W6E3" FT /db_xref="HSSP:1GM5" FT /db_xref="InterPro:IPR014021" FT /db_xref="UniProtKB/TrEMBL:Q7W6E3" FT /protein_id="CAE38263.1" FT /translation="MVVPEDFVLHLPLRYEDETRVTPVSSLRPGFAAQVEGEILRSEVL FT YRPRRQLTAVLADDSGELQLRWLNFYPSQQKQLTVGRRLRARGEVRGGLFGREMVHPRM FT SSADQPLPASLTPVYPSTDGLPQPTLRKAIGQALARADLSDTLPEEARRRYGLAEFAPA FT VRLLHAPPPDAAEHELMERIHPAWRRIKFDELLAQQLSLAAARAARRVKRAEPLPASQD FT EDGLVARLYEALPFALTGAQQRVVAEIAADLAQPYPMHRLLQGDVGSGKTVVAAIAAAQ FT AIACEAQVALMAPTEILAEQHFRKLVGWLEPLGVAVAWLSGSLSAKARREAAAAVADGS FT VQLVVGTQALIQDHVMFQRLGLSIVDEQHRFGVGQRLALSRKGETGRGVIVPHQLNMSA FT TPIPRTLAMTFFADLDVSVIDELPPGRTPVVTKLVADARREEVIGHIAHAARQGRQAYW FT VCPLVEESEALELQTAVDTHEAMRAALPDLRIGLVHGRLPQAEKAEVMRAFREGEIDLL FT VATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESICVLLYQAPLSQVA FT RQRLRAMFETSDGFEIARRDLEQRGPGEFLGTRQSGLALLRFADLEADVAIAEQAREAA FT VWLRAKHPEAVAAHLARWMRGREDFLRT" FT misc_feature complement(62854..63072) FT /note="HMMPfam hit to PF00271, Helicase conserved FT C-terminal domain, score 2.3e-21" FT misc_feature complement(63241..63849) FT /note="HMMPfam hit to PF00270, DEAD/DEAH box helicase, FT score 5.8e-21" FT misc_feature complement(63715..63738) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(64645..65031) FT /transl_table=11 FT /locus_tag="BPP2974" FT /product="putative translational inhibitor" FT /note="ortholog of Bordetella pertussis (BX470248) BP1611" FT /db_xref="HSSP:1J7H" FT /db_xref="InterPro:IPR006175" FT /db_xref="UniProtKB/TrEMBL:Q7W6E2" FT /protein_id="CAE38264.1" FT /translation="MSKQIIHTDAAPAAVGPYSQTVAATGAKTVYLSGQIGLEPGTGDL FT VSENFDAQVRQAFANMQAVIKEAGGTLDDIVKLTLFLTDLNKFAAANAIMAELIPQPFP FT ARSTVGVASLPKGAQFEVEAVLVL" FT misc_feature complement(64651..65010) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01042, YjgF family, score 1.7e-47" FT CDS complement(65208..68021) FT /transl_table=11 FT /locus_tag="BPP2975" FT /product="putative autotransporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP1610" FT /db_xref="GOA:Q7W6E1" FT /db_xref="HSSP:1DAB" FT /db_xref="InterPro:IPR003991" FT /db_xref="UniProtKB/TrEMBL:Q7W6E1" FT /protein_id="CAE38265.1" FT /translation="MLRSVSPLFSLPVSGRRQPVRMVASAARPVLAVALGGAMIGAPLA FT RAEHWSGATIKKTGQGEIGIEVPDKTAALHTGPWGARKMTVETTGARGVGVLLDKTGVS FT LTLEEAAITSSGDLGLDSSYQPRGTVMVRAGALTARGTTIRNRYGSSAGDWSRRPLALR FT VAGPDASLILSDSTVEGEQGMQLVSRARADIVRSTVRGLHATGLSIKYAAKASLADSEV FT LGERAARVDGDGELAARNTRFSGRSGLLLSSGGRADLSGGSLAASNGSALDLYGGVEGQ FT LRDVEVSAQGAPAIDLVSTLAGDSAGDSPARRDPVLRVVGGSISVAGAHAPALSLGGGQ FT ARLDTVDVRTAGSPAVELVAGALGVAGGTVNAGQAPVFVTGAYDAVLAAANVFLRPAKA FT APQDGMPAVTVTLSGAKVGGAQLLRQTTPVPVRLVLRGAAVAQGDVVRAPETAPEKDGF FT GTPVRPGLRVGLDQAPLELDVADGAQWHGATQSLDRLALGAGGQWRMSAASSVGELSME FT PGAAVVFGDAAGPGFQTLTVRTLAGAGSFEMRADAALEHADQLVVTDQAEGRHRVWLRA FT PAGAEPSKAQAVLVRAPADGKASFELDGSDGRADFGTYRYGLAQQPGGAWGLVRTGYSS FT TAAAALDTGGLGAVQGLWYAESNALGKRMGELRLNPDAGGAWGRAFSQRQRISPRAGRH FT FQQGVSGIELGADRAWPVAGGRWHAGGLLGYTRASRGFSGQGKGHTDSVHVGGYATYIG FT ANGVYADATLRASRFENSFDVPGWAGRTVSGSYRANGVGVTLEAGRRLALDRHWFVEPQ FT AELAWFRAGGGTYTASNGLRIEDDGGTSLQARVGAQAGRRFDLRGGAVVQPYAQLSWVQ FT ELKGVSTVRTNGIAHRTDLGAGRVELGLGVAAALGKGHNLYASYEYAHGPRLSLPWTVQ FT LGYRYAW" FT misc_feature complement(65214..66440) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03212, Pertactin, score 1.6e-193" FT CDS complement(68185..68988) FT /transl_table=11 FT /locus_tag="BPP2976" FT /product="probable aldehyde reductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1609" FT /db_xref="GOA:Q7W6E0" FT /db_xref="HSSP:1HW6" FT /db_xref="InterPro:IPR020471" FT /db_xref="UniProtKB/TrEMBL:Q7W6E0" FT /protein_id="CAE38266.1" FT /translation="MTIPSFGVGTFRLTGQTVIDSVRNAIDLGYRAVDTAQIYGNETEV FT GQAIAESGVARSELFVTTKIWTDNYARAKLLPSLRASLEKLRTDYVDLTLIHWPAPGNG FT VALPEYMEALAEAKALGLTRRIGISNFNIALTRQAIAAVGQGEIATNQIELSPYLQSAR FT LTAFLREQGIAVTSYMTLAYGKVLKDPVLARIADKHRSTVAQVALAWALQQGYAVIPSS FT TKRENLASNLLARGLALDADDMARIAALERNGREVDPEGLAPAWD" FT misc_feature complement(68227..68988) FT /note="HMMPfam hit to PF00248, Aldo/keto reductase family, FT score 5.9e-86" FT misc_feature complement(68596..68649) FT /note="PS00062 Aldo/keto reductase family signature 2." FT misc_feature complement(68851..68904) FT /note="PS00798 Aldo/keto reductase family signature 1." FT CDS complement(69060..70223) FT /transl_table=11 FT /locus_tag="BPP2977" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1608" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7W6D9" FT /protein_id="CAE38267.1" FT /translation="MKSSAALFALATGAFAIGTTEFTPMGLLPVIADGVQVSIPSAGML FT ISAYAVGVMLGAPVMTLLFARFGKRAALMPLMLIFTVGNLLSAFAPSYSTLLLSRLITS FT LNHGAFFGIGAVVAASLVPREKQASAIAAMFMGLTLANIGGVPVATWIGQQVGWRLAFG FT GTAALGLVTIAALWLALPKGEPGKRPDVRRELGVLTRPEVLLAMGTTVLGAGAMFALYT FT YVAPVLADLTHASPNFVAFALVLIGIGFTLGNTLGGRLADWSLDGATKLILGLLAVIMA FT VLPLLLTTHAGAAIGLVVWAAAAFGIVPPVQMRVMQAAAQAPGLASSVNVGAFNLGNAL FT GAALGGAAIGQGLGYASVPLVGAALAAGGLGLVWLGNAGRRRVAQGA" FT misc_feature complement(69066..70211) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00083, Sugar (and other) FT transporter, score 0.0042" FT misc_feature complement(join(69096..69161,69174..69239,69279..69344, FT 69357..69422,69444..69509,69555..69620,69684..69749, FT 69765..69830,69858..69923,69954..70010,70032..70097, FT 70143..70208)) FT /note="12 probable transmembrane helices predicted for FT BPP2977 by TMHMM2.0 at aa 5-27, 42-64, 71-90, 100-122, FT 131-153, 158-180, 201-223, 238-260, 267-289, 293-315, FT 328-350 and 354-376" FT misc_feature complement(70176..70223) FT /note="Signal peptide predicted for BPP2977 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.772 between residues 16 and 17" FT CDS 70313..71227 FT /transl_table=11 FT /locus_tag="BPP2978" FT /product="probable LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1607" FT /db_xref="GOA:Q7W6D8" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W6D8" FT /protein_id="CAE38268.1" FT /translation="MNSTMKTTLDELQAFVAVVDTGSITAAAEQLGLTVSAASRTLGRL FT EEKLQTTLVRRTTRRLELTEEGAAFLQHARAILASVDEAEEQMAARRMRPAGRLRVDAA FT TPFMLHVLVPLIAGFHARYPEVELELNSNEGIVDLIEKRTDVAFRIGVLKDSTLHARAV FT GTSRLRVLASPAYLERRGAPTRTAQLAQHALLGFTQPETLNDWPLRDADGTVLRIRPTI FT ASSSGETLRHMALAGLGIVCLSDFMTGEDRRAGALVQLFARQTLDVRQPVNAVYYRNTA FT LAARITCFVDHVIETLGARPFDA" FT misc_feature 70337..70516 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 7.9e-23" FT misc_feature 70379..70471 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 70586..71206 FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 2e-41" FT CDS complement(71292..72068) FT /transl_table=11 FT /gene="fpr" FT /locus_tag="BPP2979" FT /product="ferredoxin--NADP reductase" FT /EC_number="1.18.1.2" FT /note="ortholog of Bordetella pertussis (BX470248) BP1606" FT /db_xref="GOA:Q7W6D7" FT /db_xref="HSSP:1A8P" FT /db_xref="InterPro:IPR017927" FT /db_xref="UniProtKB/TrEMBL:Q7W6D7" FT /protein_id="CAE38269.1" FT /translation="MAAFNTERVLSVRHWNDTLFSFTTTRDAALRFHNGHFVMIGLEIE FT GKPLMRAYSIASANYEENLEFLSIKVQDGPLTSRLQHLKEGDTILVSRKPVGTLVVDDL FT KPGKHLYLFGTGTGLAPFMSIIKDPEVYERFEKVVLVHGVRWASELAYADFIEKELPGN FT EFFGDIVRDKLVYYPTVTREPFRNQGRITQLVDSGKLCADIGLPQLDPAVDRAMICGSP FT HMLADIRAMLDKRGFEVSPGVGEPGDYVFERAFVDK" FT misc_feature complement(71376..71750) FT /note="HMMPfam hit to PF00175, Oxidoreductase NAD-binding FT domain, score 0.0016" FT misc_feature complement(71766..72053) FT /note="HMMPfam hit to PF00970, Oxidoreductase FAD-binding FT domain, score 0.00043" FT CDS 72390..73439 FT /transl_table=11 FT /locus_tag="BPP2980" FT /product="putative iron binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1605" FT /db_xref="GOA:Q7W6D6" FT /db_xref="InterPro:IPR006059" FT /db_xref="UniProtKB/TrEMBL:Q7W6D6" FT /protein_id="CAE38270.1" FT /translation="MPSTKRSSLIPLLRALALAGVATFSAQALAADEVSLYTTREPKLI FT QPLLDAFAKDSGIKVNTVFVKDGLLERVRAEGDKSPADVLMTVDIGNLIDLVNGGVTQK FT IQSQTLDSVVPANLRGAEGSWYALSLRDRVLYVEKDLKLDSFRYEDLADPKWKGKVCIR FT SGQHPYNTALVAAMIAHDGAEATEKWLRGVKANLARKAAGGDRDVARDILGGICDIGLA FT NAYYVGHMKNAEPGTDARKWGDAIKVVRPTFATAKDGGTHVNISGAAVAAHAPNKANAV FT KLLEYLVSEPAQTLYAQANYEYPVRAGVKLDAVVASFGPLKVDTLPVAEIAKYRKQASE FT LVDKVGFDN" FT misc_feature 72390..72479 FT /note="Signal peptide predicted for BPP2980 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.988 between residues 30 and 31" FT misc_feature 72498..73433 FT /note="HMMPfam hit to PF01547, Bacterial extracellular FT solute-binding protein, score 0.00084" FT CDS 73563..75233 FT /transl_table=11 FT /locus_tag="BPP2981" FT /product="putative inner membrane component of FT binding-protein-dependent transport system" FT /note="ortholog of Bordetella pertussis (BX470248) BP1604" FT /db_xref="GOA:Q7W6D5" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7W6D5" FT /protein_id="CAE38271.1" FT /translation="MHTTFLPRSARTRFSERGAGWLAGASLIALAVLAPVATLAWWALH FT ADLSHWTHLTRYVLPQAMANTMILLAGVGVLVTMLGTGAAWLVTAYEFPTRRTLTWALL FT LPLAVPTYIIAFAYLDLLHPIGPVQGAIRAVLGYDSPRQFRLPDLRSIYGAIFVLGFVL FT YPYVYLSTRVMFMTQAASLLEAARTLGAGRVGVFLRVALPMARPAIAVGVSLALLETLN FT DIGASEFLGVQTLTVSVYTTWITRSDLASAAQIALTMLVFVIALILLERHGRKRQRYAN FT TQRMRAMQPRRLHGPAAALAAVLGWIPVVLGFVAPALYLIVETYKRLHPVGGVSDQLWA FT GLRNTLMVATLATVVTLLCGLVVAWAGRSLRESASFNPGRTCGRIASLGYAVPGTVLAI FT GLLAPFAWLDHTMSTLFGWNGLLLMGTTGALVCAYTIRFLAISTGGIEAGLARIPASLE FT QASRLLGETSAGTLRRVHLPLQRPALAASALLVFVDTMKELPATLLLRPLNFETLATWL FT YAEAARGTYEEGAVAALAIVAAGLIPVILLARTNLKMGH" FT misc_feature 73563..73682 FT /note="Signal peptide predicted for BPP2981 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.992) with cleavage site FT probability 0.401 between residues 40 and 41" FT misc_feature join(73623..73691,73758..73826,73860..73928,74013..74072, FT 74148..74216,74310..74369,74439..74507,74595..74663, FT 74718..74786,74814..74882,75147..75206) FT /note="11 probable transmembrane helices predicted for FT BPP2981 by TMHMM2.0 at aa 21-43, 66-88, 100-122, 151-170, FT 196-218, 250-269, 293-315, 345-367, 386-408, 418-440 and FT 529-548" FT misc_feature 74082..74294 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 3.3e-11" FT misc_feature 74085..74171 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT misc_feature 74907..75128 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 0.0013" FT CDS 75238..76014 FT /transl_table=11 FT /locus_tag="BPP2982" FT /product="probable ATP-binding component of ABC FT transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP1603" FT /db_xref="GOA:Q7W6D4" FT /db_xref="HSSP:1G29" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W6D4" FT /protein_id="CAE38272.1" FT /translation="MADLLELDHIRLGYDTPQGLKTIIDDLSLSLPAGHIGCLLGESGC FT GKTTVLRAIAGFEPVLAGHIALDGAVISSPDVQVAPELRRVGMMFQDYALFPHLSVSQN FT VAFGLRRLSRPARAQRVAEMLELVGLAQSADSYPHEISGGQQQRVALARAMAPSPDLLL FT LDEPFSNLDVDTRERLAFEVREILKRTGHTAILVTHNQAEAFAIADRIGVMARGHIEQW FT DTPYNLHQHPASPFVRDFIRREALVEQRLQAFDRGR" FT misc_feature 75337..75888 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 3.9e-59" FT misc_feature 75358..75381 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 75658..75702 FT /note="PS00211 ABC transporters family signature." FT CDS complement(76034..76939) FT /transl_table=11 FT /locus_tag="BPP2983" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1601" FT /db_xref="HSSP:1J1L" FT /db_xref="InterPro:IPR003829" FT /db_xref="UniProtKB/TrEMBL:Q7W6D3" FT /protein_id="CAE38273.1" FT /translation="MSILNNAPQSAVQTIVVPRTSDLGGFEVRRALPSAQQRSVGPFVF FT LDEMGPVQFPAGVGMDVRPHPHIGLATVTYLYEGSLVHRDGAGNVQTILPGEVNWMTAG FT RGIVHSERTAPESRLAPLRMYGLQMWVGLPKEQEETDPGFVHYGTQAQPVVEGEGVRAQ FT VIAGSLFGQTSGVRTLSPLFYGDVQLQAGATVVVPPEHEERAAYLVEGTVDIEGQAYEP FT GRLIVFAPGVAVTIRAQTAARMALVDGEPLDGPRFIWWNFVSSSKDRIEQAKEDWTRNR FT FGQVVPGDETEFIPLPPPRS" FT misc_feature complement(76190..76867) FT /note="HMMPfam hit to PF02678, Uncharacterized BCR, YhhW FT family COG1741, score 2.6e-06" FT CDS complement(77017..77715) FT /transl_table=11 FT /locus_tag="BPP2984" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1600" FT /db_xref="InterPro:IPR003829" FT /db_xref="UniProtKB/TrEMBL:Q7W6D2" FT /protein_id="CAE38274.1" FT /translation="MLTLRRSAERGHANHGWLDTHHTFSFANYYDPAHMGFGPLRVIND FT DRIAAGRGFGTHGHRDMEIITYVLDGAIAHKDSMGSGSTIRPGDVQRMSAGRGVMHSEF FT NPQPDAATHMLQIWIEPDVAGIAPEYEEKRFPEADKRGRLRQLVSPDGADGSLRIHQDA FT RLYAGLFDGTESAELPLAAGRRSWVHVARGSLVVNGQRLGAGDGLALQDEAAVRLGDGE FT GAEVLVFDLP" FT misc_feature complement(77023..77715) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02678, Uncharacterized BCR, YhhW FT family COG1741, score 1.3e-111" FT CDS 77875..78819 FT /transl_table=11 FT /locus_tag="BPP2985" FT /product="LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1599" FT /db_xref="GOA:Q7W6D1" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W6D1" FT /protein_id="CAE38275.1" FT /translation="MPRPRAAPPPGQPITPDLLVMVDAIARHGSFAKAARELGKVPSAV FT TYAIRKLEDGLDVLLFDRSGHRAALTPAGQALLAEGRHVLQSLDALASRVKRVATGWEG FT ELRIAVSAVLPWTPLYDLIEDFRALAGATTLRFSAEVLSGNWDALASGRADLLIGADAA FT GAPSGAYRTQAMGQTQFAFCVAPHHPLAALGRPLSARDIAAYCAIVVADTSRDLPPRTR FT GLLREQPVIVMPTMQAKIDAQVRGIGVGHLPLTLAAPYLAQGLLATCPTDDVVPLTEQV FT VYAWRDPNPGRALQWWLERLRSPRLCESLLGVS" FT misc_feature 77920..78099 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 9.7e-19" FT misc_feature 78169..78792 FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 1.6e-21" FT CDS complement(78829..80319) FT /transl_table=11 FT /gene="glnG" FT /gene_synonym="ntrC" FT /gene_synonym="glnT" FT /locus_tag="BPP2986" FT /product="nitrogen regulation protein NR(I)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1598" FT /db_xref="GOA:Q7W6D0" FT /db_xref="HSSP:1KRW" FT /db_xref="InterPro:IPR020441" FT /db_xref="UniProtKB/TrEMBL:Q7W6D0" FT /protein_id="CAE38276.1" FT /translation="MMKPVWIVDDDQAIRWVLEKALARAGIATRSFSRAADVLQALAAD FT VPSVLVSDIRMPGGDGLELLRQIKERNPGLPVIVMTAFADLDSTVSAFQGGAFDYLAKP FT FDVNEAVALIQRAMQEGEPAADAGAAGEPAQNGERWVMTQSSSTAMQEVFRAIGRLAQS FT KVTVLITGESGTGKELVARALHGHGARAGGPFVALNAAAIPRDLLEAELFGHERGAFTG FT ANTLRRGRFEEAHGGTLFLDEIGDMPIELQTRLLRVLAEGSFYRVGGAQPVRVDVRIVA FT ATHQPLEQRVEQGLFREDLFHRLNVIRLRLPPLRERVEDIPALAQHFLATSARALGVPV FT KRLTPDALAVLARFDFPGNVRQLENFCHWLTVMAPGQTIDRNDLPPEIRAVEHQQAAAR FT QAEPAAAAAAAGTAPAPAEAPDAAPRNWHAALLRDAQFRLERGEPAVMATLTRQFEKIL FT LQSALDASRGRRVEAASRLGIGRNTITRKLRELGIDDE" FT misc_feature complement(78847..78969) FT /note="HMMPfam hit to PF02954, Bacterial regulatory FT protein, Fis family, score 3.8e-12" FT misc_feature complement(79225..79254) FT /note="PS00688 Sigma-54 interaction domain C-terminal part FT signature." FT misc_feature complement(79228..79887) FT /note="HMMPfam hit to PF00158, Sigma-54 interaction domain, FT score 2.4e-133" FT misc_feature complement(79588..79635) FT /note="PS00676 Sigma-54 interaction domain ATP-binding FT region B signature." FT misc_feature complement(79780..79821) FT /note="PS00675 Sigma-54 interaction domain ATP-binding FT region A signature." FT misc_feature complement(79954..80313) FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain, score 2.4e-34" FT CDS complement(80316..81392) FT /transl_table=11 FT /gene="glnL" FT /gene_synonym="ntrB" FT /gene_synonym="glnR" FT /locus_tag="BPP2987" FT /product="nitrogen regulation protein NR(II)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1597" FT /db_xref="GOA:Q7W6C9" FT /db_xref="InterPro:IPR000014" FT /db_xref="UniProtKB/TrEMBL:Q7W6C9" FT /protein_id="CAE38277.1" FT /translation="MPPMTNVDAFDLLATSVFLLNERGHIEYANAAAEDLFGRSRKQLR FT GLSAATLFDNPEDLQSAIDSAAAGKFADVRQLASLRRVVESVEVTVTTVSLSGQAWPVL FT IETREIEQRVLADRNQRLVDEIESHRELLRNLAHEVKNPLGGLRGAAQLLEAELPSAAL FT AEYTQVIITEADRLQALVDRLSGPQRVPLAARPVNIHEICERVCALIQAEFRDAVELVR FT DYDASVPELRGDAARLMQAVLNVARNAAQELVQQKPGADVPAPRVVLRTRVARQVMLAH FT RQHRLALVVSVLDNGPGVPEHIRERIFHPLVTARAGGTGLGLSLAQDFVQQHGGIIEFE FT SRARHTEFRLVLPMEPPL" FT misc_feature complement(80328..80696) FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 1.4e-26" FT misc_feature complement(80814..81011) FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain, score 1.2e-13" FT CDS complement(81447..82859) FT /transl_table=11 FT /gene="glnA" FT /locus_tag="BPP2988" FT /product="glutamine synthetase" FT /EC_number="6.3.1.2" FT /note="ortholog of Bordetella pertussis (BX470248) BP1596" FT /db_xref="GOA:Q7W6C8" FT /db_xref="HSSP:1F52" FT /db_xref="InterPro:IPR008147" FT /db_xref="UniProtKB/TrEMBL:Q7W6C8" FT /protein_id="CAE38278.1" FT /translation="MASPKDVLKQIADNEVKFVDFRFTDTLGREHHVSVPTSAVDEDKL FT ESGQAFDGSSIPGWKGIEASDMLLIPDLDTANLDPFREEPTLILSCDVVEPSDLKGYDR FT DPRSLAKRAEAYLKSSGLGDTAYFGPEPEFFVFDGVTWNTDMSGTFVKIKSEEAPWSSG FT LEFEGGNMGHRPGPKGGYFPVPPVDSFQDMRSEMCLLLEQMGVPVEVHHHEVAAPGQLE FT IGTKFSTLVQRADWNQVMKYVIHNVAHVYGKTATFMPKPIVGDNGSGMHVHQSIWKDGQ FT NLFAGNGYAGLSEFALYYIGGIIKHARALNAITNPGTNSYKRLVPHFEAPVKLAYSARN FT RSASIRIPYVGNPKARRIETRFPDPLANPYLAFSALMMAGLDGVQNKIHPGDPADKNLY FT DLPPEEDAKIPTVCASLEEALAALDKDREFLTRGGVFSNDMLDAYIELKMGEVTRLRMT FT THPVEFDMYYSL" FT misc_feature complement(81663..81701) FT /note="PS00182 Glutamine synthetase class-I adenylation FT site." FT misc_feature complement(81741..82811) FT /note="HMMPfam hit to PF00120, Glutamine synthetase, score FT 3.8e-231" FT misc_feature complement(82035..82082) FT /note="PS00181 Glutamine synthetase putative ATP-binding FT region signature." FT misc_feature complement(82653..82709) FT /note="PS00180 Glutamine synthetase signature 1." FT CDS complement(83045..84265) FT /transl_table=11 FT /locus_tag="BPP2989" FT /product="putative porphyrin oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1595" FT /db_xref="GOA:Q7W6C7" FT /db_xref="InterPro:IPR007197" FT /db_xref="UniProtKB/TrEMBL:Q7W6C7" FT /protein_id="CAE38279.1" FT /translation="MAITIPIRNLGGPAAGARVLAPAGATLTSLPPLSVYVHVPWCVRK FT CPYCDFNSHAAPGEIPERAYLDALRADLEQAVPEVWGRQVISVFIGGGTPSLLSAAGLD FT ELLAMLRACLNLLPDAEITMEANPGTAEAGRFRDYAASGVTRLSLGIQSFDDAQLSRLG FT RIHDAAQARAAIAMAQQAVERVNLDLMFALPGQELEQCRADLRQALAFGTEHLSLYHLT FT LEPNTVFAKYPPELPDDDASAAMQDMVEETLAQAGLARYEVSAYARRGARCRHNLNYWE FT FGDYLGLGPGAHGKLSFHDRIERQARLRNPDSWMQRAMARDGSHVAESRVVGAGELPFE FT FMLNALRLKEGVAASSFGERTGLSLAAIAHQLEAATRRGLLDADPTRLRATALGWRFLN FT DLQEMFL" FT misc_feature complement(83354..84022) FT /note="HMMPfam hit to PF02473, Oxygen-independent FT Coproporphyrinogen III oxidase, score 3.9e-11" FT CDS complement(84287..84988) FT /transl_table=11 FT /locus_tag="BPP2990" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1593" FT /db_xref="GOA:Q7W6C6" FT /db_xref="HSSP:1K7K" FT /db_xref="InterPro:IPR002637" FT /db_xref="UniProtKB/Swiss-Prot:Q7W6C6" FT /protein_id="CAE38280.1" FT /translation="MLRRFASRAEAAASRSTMLPMSAEILNPNLRRVVLASNNAGKLRE FT FSALFAPLGIELVPQSELGVSEAAEPHATFVENALAKARHASRHTGLPALADDSGLCVV FT ALGGAPGVHSARYAQQPGGARSDAANNALLVRELAAAGDRRAWYVALLALVRTENDPCP FT LIGEGLWHGEIVDAPAGEHGFGYDPHFYLPQQGCTAAQLAPEHKNRISHRAQALAQLLD FT KLRATGPVDRP" FT misc_feature complement(84317..84892) FT /note="HMMPfam hit to PF01725, Ham1 family, score 2.8e-64" FT CDS 85055..86857 FT /transl_table=11 FT /locus_tag="BPP2991" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1592" FT /db_xref="InterPro:IPR001633" FT /db_xref="UniProtKB/TrEMBL:Q7W6C5" FT /protein_id="CAE38281.1" FT /translation="MISSSAADLHADAGLAAILQGGLLNPCYQPVADLAQDRIFGHESL FT IRGPHQSVLHMPDALFAAARRDGLHAELELASLQAGARRFIELDSPGNLFLNLSGAVLV FT ACWRHYGSGLPVMLLADSGLAADRVVIEITEYDPVGGDLPALNQALACLRASGMRVALD FT DYGVGNASLQLWAELAPDLVKIDRYFFNGISRDERRLQLVRSMVSTARQLNSTLVAEGI FT ENADDLRTVYELGIRYAQGWFLGRPENEPRTDLPTAARASLQPACATQPTRIPGHTALA FT LRVEAPPVMLARHTNDDVQRLFQEHRHLHAVAVLDTDSRPVGIINRRDFSEHYAQRYTR FT DLFGRNPCSTFMNPDPVLVDVHTSIDQLSHVLLSDDQRYLADGFVITRGGRYDSLGTGE FT ALVRSVTEMRLEAARYANPLTSLPGNIPISQHIAHLLDHALDFVVCYADLDNFKPFNDV FT YGYWRGDDMIRLCADSIKRHCDARRDFVGHVGGDDFVVMLRSTDWRLRIERIIAEFNLR FT ALDLYDDQGRHDGGIRAEDRYGVLRFFPCVTLGIGALEVSPVELGSHVRPEDLASAAAR FT VKQQVKHGNLALLVQRYQLPARAA" FT misc_feature 85076..85831 FT /note="HMMPfam hit to PF00563, EAL domain, score 1.8e-30" FT misc_feature 86288..86809 FT /note="HMMPfam hit to PF00990, GGDEF domain, score 0.00035" FT CDS complement(86735..88426) FT /transl_table=11 FT /locus_tag="BPP2992" FT /product="methyl-accepting chemotaxis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1591" FT /db_xref="GOA:Q7W6C4" FT /db_xref="InterPro:IPR003660" FT /db_xref="UniProtKB/TrEMBL:Q7W6C4" FT /protein_id="CAE38282.1" FT /translation="MRKKLKLAAALSATLAFFVLLFAAAAGAGVAVLRDNQAAIEALGR FT GNIERASDLGDTTSWLFQARAVLADAKTYMEGGLEEQRDAALAQAATLLEQARASQERL FT RANPEMAAQGASLYDEVLAGYDALAVQALAPLHAALKGWNGIEANRLAERALPQAAERY FT IEAVDAFQGYAREQGRAAVADAARVLERMVLGAAALLALVAVLAVVIRLGFRRAMLRPL FT TEAGRHFDRIADGDLTAAIAARGDNEIGVLYSAMRRMQGGLTRAVESVRHGVEEIHTGS FT GEIAAGGVEMSGRTARQAGALQEAAASMAELAGTVRATAEHADQASRQAAGATELARQG FT GTAVAQVVASMRDIASGAQRIAEIVGLVDSLAFQTNVLALNAAVEAARAGPQGRGFAVV FT AGEVRSLAQRSAQAAREIKGLIDDSSARVASGVQQVNLAGATMGEIVQSIDRVTQLVAG FT ISEASATQAAGIASVNLAVADAERATQQNAAMAEQTAAAAASLEAQAQALRQAVAVFRL FT AGVAPRSGGAGGQLVALDQQRQVAVLDLLLDAGGGRGEVLRANVAA" FT misc_feature complement(86873..87571) FT /note="HMMPfam hit to PF00015, Methyl-accepting chemotaxis FT protein (MCP) signaling domain, score 1e-68" FT misc_feature complement(87632..87841) FT /note="HMMPfam hit to PF00672, HAMP domain, score 6.2e-08" FT misc_feature complement(join(87785..87850,88331..88396)) FT /note="2 probable transmembrane helices predicted for FT BPP2992 by TMHMM2.0 at aa 10-32 and 192-214" FT misc_feature complement(88343..88426) FT /note="Signal peptide predicted for BPP2992 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.587 between residues 28 and 29" FT CDS complement(88509..89414) FT /transl_table=11 FT /locus_tag="BPP2993" FT /product="probable transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1590" FT /db_xref="GOA:Q7W6C3" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W6C3" FT /protein_id="CAE38283.1" FT /translation="MAAHFDLTDLQLLVHIGDWHSLTRGAEKSHLSLPAASTRVKNLEE FT HFGTQLLYRTSQGVTLTPSGEAMLRHARTVMQQVEQMRGDMQEFARGVKGHVRVLANTT FT AMTEFMPAVLARYLAAHPDVNVELRERLSYLVVRAVADGSADIGVVAGCAPDQKLQFIP FT YRKDRLVVVTPAGHRLAAEESVAFADTLADDYVGLSEWSAIHPFLVQAAASLGRTFKFR FT VEVGNFEAVCRMIESGVGIGVIPESAALRYARNLDIALVGLTDEWAVRELQICVKNLDS FT LPVFARELVETLVADGDAAG" FT misc_feature complement(88521..89147) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 1.3e-38" FT misc_feature complement(89217..89396) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2.7e-15" FT misc_feature complement(89262..89354) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 89597..90973 FT /transl_table=11 FT /locus_tag="BPP2994" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1589" FT /db_xref="GOA:Q7W6C2" FT /db_xref="InterPro:IPR005656" FT /db_xref="UniProtKB/TrEMBL:Q7W6C2" FT /protein_id="CAE38284.1" FT /translation="MTMIPSPSDHPSARLAEFTAGLRYEDIPPPVLRRAEDLFLDSLAS FT ILAGAGAPPVQAIARYAAAMGPADGPSQNLVTRTGTTPLFAAMVNAAACHVVEQDDVHN FT GAVFHPAAVVFPPALAVAQALGRSGRELLTAAVAGYEAGIRIGEFLGRSHYRIFHTTAT FT VGPLAAAVTVGHLLRLDAAQMLHALGSAGTQSAGLWEFLRDAADSKQLHTAHAAAAGIT FT AAYLAQDGFTGAQRILEGAQGLAAGMSSDADPSRLLDGLGQRWALAETSFKYHASCRHT FT HPAADALQHVMREHGLRAADLAAVETLVHQGAIDVLGPVTAPATVHQSKFSMGTVLALI FT ALRGHAGLTEFDAAPGDAEVAALRDKVRMTLDDEVNRAYPRRWIGKVNVTTTDGRRLHG FT RVDEPKGDPGNTLSRPEIEDKVARLARYGGHATESEVRALIDRVWRIAEQERVGKLLSE FT " FT misc_feature 90092..90124 FT /note="PS00178 Aminoacyl-transfer RNA synthetases class-I FT signature." FT CDS complement(91106..91858) FT /transl_table=11 FT /gene="rph" FT /locus_tag="BPP2995" FT /product="ribonuclease PH" FT /EC_number="2.7.7.56" FT /note="ortholog of Bordetella pertussis (BX470248) BP1588" FT /db_xref="GOA:Q7W6C1" FT /db_xref="HSSP:1R6L" FT /db_xref="InterPro:IPR002381" FT /db_xref="UniProtKB/Swiss-Prot:Q7W6C1" FT /protein_id="CAE38285.1" FT /translation="MSTSAADTLSRPSVRPAGRAVDALRPFSLERGFTRYAEGSVLVRA FT GNTHVLCTASVLEKVPPFLKGRGEGWVTAEYGMLPRATHTRGDREAARGKQSGRTQEIQ FT RLIGRSLRAVFDLRLLGERTLHLDCDVLQADGGTRCASITGAWVAAADAVALLMQRGDL FT AHNPIRDAVAAVSVGLVDGRAVLDLDYQEDSACAADVNVVMTGSGAFVEVQGTGEGATF FT TRGELDTMLGLAEGGIAQLVRAQREALQ" FT misc_feature complement(91148..91351) FT /note="HMMPfam hit to PF03725, 3' exoribonuclease family, FT domain 2, score 1.5e-16" FT misc_feature complement(91391..91792) FT /note="HMMPfam hit to PF01138, 3' exoribonuclease family, FT domain 1, score 1.6e-46" FT CDS join(91995..92834,92836..92922) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP2996" FT /product="conserved hypothetical protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1587" FT /db_xref="PSEUDO:CAE38286.1" FT CDS 93193..93348 FT /transl_table=11 FT /locus_tag="BPP2997" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1586" FT /db_xref="UniProtKB/TrEMBL:Q7W6C0" FT /protein_id="CAE38287.1" FT /translation="MHGIAELPTYIRLADKLLGPQERQDLIGYLAAHPEAGDIMEDTGG FT VRVIYY" FT CDS 93361..93489 FT /transl_table=11 FT /locus_tag="BPP2998" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1585" FT /db_xref="UniProtKB/TrEMBL:Q7W6B9" FT /protein_id="CAE38288.1" FT /translation="MPLYLLALFAKGDKANLTKAERNELAGLVDVLVNIWKGRAKS" FT CDS 93486..93770 FT /transl_table=11 FT /locus_tag="BPP2999" FT /product="putative DNA-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1584" FT /db_xref="GOA:Q7W6B8" FT /db_xref="InterPro:IPR001387" FT /db_xref="UniProtKB/TrEMBL:Q7W6B8" FT /protein_id="CAE38289.1" FT /translation="MSTAFNNIRQGLSEAIAHAKGNVHGVRVHRPRQVDVKAVRAKVGM FT TQEQFAAQFGFSPATLRHWERGDRTPRGAALVLLNVIDRNPQAVIEALA" FT misc_feature 93591..93752 FT /note="HMMPfam hit to PF01381, Helix-turn-helix, score FT 2.3e-06" FT CDS complement(93829..95319) FT /transl_table=11 FT /gene="amn" FT /locus_tag="BPP3000" FT /product="putative nucleosidase" FT /EC_number="3.2.2.4" FT /note="ortholog of Bordetella pertussis (BX470248) BP1583" FT /db_xref="GOA:Q7W6B7" FT /db_xref="InterPro:IPR018017" FT /db_xref="UniProtKB/TrEMBL:Q7W6B7" FT /protein_id="CAE38290.1" FT /translation="MPSDYSIAQLHCPDPVPFEAFDSAVAATDRLIELYRRNTGFVREL FT FHEVVGGRELSGRVRAYYPAIRIGVQTYDPIDSRLSYGHVAEPGEYQTTITQPHLFRDY FT LIEQIGLLLQNHRVPVEVGESDMPIPLHFAFPDGTYVEGEHIENLRRPLRDLFDVPDLA FT VTDDAIVNGSWRGQPGEPRPLAPFTATRVDYSLHRLQHYTATAPTHFQNFVLFTNYQFY FT VDEFCVWARGLMASGGGDYDALIEPGNRITRRGDQAPVEAAAVRLPQMPAYHLVRPNHS FT GITLVNIGVGPSNAKTITDHIAVLRPHAWLMLGHCAGLRDSQRLGDYVLAHGYVREDHV FT LDADLPTWVPVPPLAEVQVALEQAVEEVAGLSGWELKRIMRTGTVATIDNRNWELRDQG FT ELVQRFAQSRAIALDMESATIAANGFRFRVPYGTLLCVSDKPLHGELKLPGMASAFYRR FT QVNQHLEIGIRALERLREMPPERLQSRKLRTFMETAFQ" FT misc_feature complement(93907..94632) FT /note="HMMPfam hit to PF01048, Phosphorylase family, score FT 4.3e-38" FT CDS 95522..96163 FT /transl_table=11 FT /locus_tag="BPP3001" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1582" FT /db_xref="InterPro:IPR000064" FT /db_xref="UniProtKB/TrEMBL:Q7W6B6" FT /protein_id="CAE38291.1" FT /translation="MSSHAVHCLSRSAVMTPPTRKARLLSLSLPAFLTAPLLALGLSLS FT PDTAQAALSPKARPSLQGLRLAGEPTVPTLRDRVVQAGLDAIGTPYSWGGDDPADGFDC FT SGLVLFVYRHTAGLELPRTARAQRGAGHTVARKNLRPGDLVFFATRGRGVTSHVGIYIG FT QDQFVHAPTRGSKVRVDSMDNRYWNKRFVGARRYLDTPAAGGTLLAASEN" FT misc_feature 95522..95638 FT /note="Signal peptide predicted for BPP3001 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.952) with cleavage site FT probability 0.322 between residues 39 and 40" FT misc_feature 95768..96112 FT /note="HMMPfam hit to PF00877, NLP/P60 family, score FT 1.3e-50" FT CDS complement(96168..96938) FT /transl_table=11 FT /locus_tag="BPP3002" FT /product="putative oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1581" FT /db_xref="GOA:Q7W6B5" FT /db_xref="HSSP:1GEG" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7W6B5" FT /protein_id="CAE38292.1" FT /translation="MQANANSGVKVALVTGAGTGIGRAVALEFLAQGYRVVLAGRRREP FT LEQTRIAAGEDGVRALVVPTDVAREESVRELFDETQRAYGRLDVLFNNAGRGAPAVPIE FT ELPVETWRDVVDTNLTGMFLCAQAAIRLMKAQQPQGGRIINNGSISAHAPRPFSIAYTA FT TKHAVTGLTKSISLDCRPYGIACGQIDIGNAATEMTERMAAGILQADGSTRQEPRMDVA FT HVAHAVAEMARLPLDTNVQFMTIMATNMPFVGRG" FT misc_feature complement(96186..96917) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase, FT score 2.2e-55" FT misc_feature complement(96411..96497) FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT CDS 97176..97889 FT /transl_table=11 FT /locus_tag="BPP3003" FT /product="probable cytochrome C" FT /note="ortholog of Bordetella pertussis (BX470248) BP1580" FT /db_xref="GOA:Q7W6B4" FT /db_xref="HSSP:1CNO" FT /db_xref="InterPro:IPR009056" FT /db_xref="UniProtKB/TrEMBL:Q7W6B4" FT /protein_id="CAE38293.1" FT /translation="MYPHRLVRCRWPVLSALAVAALCSPAAHAQAPAPADAARIASQGA FT DGVAACVTCHGAKGEGNPAAGFPHLAGLGSGYLYEQLTALANGSRANPVMAPIAKGLSD FT AQRQALAEYYAGLPAPFEADRLAATHLGEPAKADTGAWLAVRGAWDRNIPACNQCHGPG FT SIGVGTAFPALAGQPAAYIAGQLRAWRQGQRPPGPLALMPAVATRLSDAEIDAVSAYYA FT NLPKQAAAPRPEASK" FT misc_feature 97176..97262 FT /note="Signal peptide predicted for BPP3003 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 29 and 30" FT misc_feature 97278..97529 FT /note="HMMPfam hit to PF00034, Cytochrome c, score 1.4e-05" FT misc_feature 97326..97343 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature 97569..97850 FT /note="HMMPfam hit to PF00034, Cytochrome c, score 0.016" FT misc_feature 97641..97658 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT CDS 97886..98803 FT /transl_table=11 FT /locus_tag="BPP3004" FT /product="putative cytochrome C" FT /note="ortholog of Bordetella pertussis (BX470248) BP1579" FT /db_xref="GOA:Q7W6B3" FT /db_xref="InterPro:IPR009056" FT /db_xref="UniProtKB/TrEMBL:Q7W6B3" FT /protein_id="CAE38294.1" FT /translation="MKHALIHRLALASLLAAALPAAPALAADAPPAFTPPAADAIPDNE FT FGKVVREGEQIFLHTPQRAAKFVGNDLTCASCHLDAGRRADSAPMWAAYVLYPAYRAKN FT EHVNTLAERLQGCFRYSMNGESPPADDPTLVALQSYMYWLASKAPTGVKLAGQGYRKLP FT APPQKPDYLRGKTAYAQYCAVCHGAEGQGQKNGRHWIFPALWGEHSFNWGAGMHQIGNA FT AGFIKANMPLGQAGLLSDQEAWDVAYFTNAHERPQAPRYQGSVAQTRAKYHDSDDSLYG FT MEVNGHLLGSAAPPSGGKLRAAGK" FT misc_feature 97886..97963 FT /note="Signal peptide predicted for BPP3004 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 26 and 27" FT misc_feature 98105..98122 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature 98429..98446 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT CDS 98924..99571 FT /transl_table=11 FT /gene="gmK" FT /gene_synonym="spoR" FT /locus_tag="BPP3005" FT /product="guanylate kinase" FT /EC_number="2.7.4.8" FT /note="ortholog of Bordetella pertussis (BX470248) BP1578" FT /db_xref="GOA:Q7W6B2" FT /db_xref="InterPro:IPR008144" FT /db_xref="UniProtKB/Swiss-Prot:Q7W6B2" FT /protein_id="CAE38295.1" FT /translation="MSFLSMSAPSGNVFMVVAPSGAGKSSLVRALLDRDPSLVLSISCT FT TRAPRPGEQDGREYRFVDQAEFARLRDAQQLLEWAEVHGNFYGTPRDRIDEATRAGHDV FT LLEIDWQGARQVKQRYPEAIGIFVLPPSIDELESRLKARGQDAPQVIARRLLAAGGEIA FT HAPECEYVIINQEFSVALTELVQIISAARLRFSSQAVRNAQLFSQLGIPAAH" FT misc_feature 98975..98998 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 99056..99109 FT /note="PS00856 Guanylate kinase signature." FT misc_feature 99059..99373 FT /note="HMMPfam hit to PF00625, Guanylate kinase, score FT 1e-30" FT CDS 99613..99816 FT /transl_table=11 FT /gene="rpoZ" FT /locus_tag="BPP3006" FT /product="DNA-directed RNA polymerase omega chain" FT /EC_number="2.7.7.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP1577" FT /db_xref="GOA:Q7W6B1" FT /db_xref="InterPro:IPR006110" FT /db_xref="UniProtKB/Swiss-Prot:Q7W6B1" FT /protein_id="CAE38296.1" FT /translation="MARITVEDCLNQIPNRFKLTLAATYRARELAQGHAPRLDSKDKPT FT VTALREIASGLTGLEMLRKVPT" FT misc_feature 99613..99810 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02564, RNA polymerase omega FT subunit, score 3e-05" FT CDS 99841..102120 FT /transl_table=11 FT /gene="spoT" FT /locus_tag="BPP3007" FT /product="guanosine-3',5'-bis(diphosphate) FT 3'-pyrophosphohydrolase" FT /EC_number="3.1.7.2" FT /note="ortholog of Bordetella pertussis (BX470248) BP1576" FT /db_xref="GOA:Q7U373" FT /db_xref="InterPro:IPR004095" FT /db_xref="UniProtKB/TrEMBL:Q7U373" FT /protein_id="CAE38297.1" FT /translation="MAFPGLKYASSGLLAALRLGRRTGKKGRTPPSPSPGAQEAVDAAA FT SPVASLAPLTEIISTYLDPKEVERVREAYRFADQAHLGQFRASGAPYISHPIAVTEICA FT GWKLDANALSAALLHDVMEDQGVGKHELAEKFSPEVAELVDGLSKLDRLDFATKAEQQA FT ESFRKMLLAMARDVRVILIKLADRLHNMRTLDAVNPEKRRRIARETLEIYAPIAHRLGL FT NLLFRELQDLCFAAMYPNRYQVLYRAVLAARGNRREVISKIEDAVRAALPAAGIEAEVT FT GREKTLYGVYRKMTEQKKSFSEVLDIYGFRVIVHTLPECYLALGTLHQLYRPVPGKFKD FT YIAIPKVNGYQSLHTTLVGPYGTPVEFQFRTRDMHHIAEEGVASHWLYKDADLTLNELQ FT KRTHQWLQSLLDIQSQTGDSGEFLEHVKVDLFPDAVYVFTPRGKIISLPRGATPVDFAY FT AIHTDIGNQAVAAKVNGEFVPLRTELSSGDTVEIITSPASRPNAQWLNYVRTGRARSEI FT RHYLRTVKYEESVAFGERLLEQAMIELHLPVPSTDDPQWDKLARSSGASSRDEILADIG FT LGKRLAAVVARRFAPEHDLIATTAAAVDQITSARAAPILIQGSEGQAVQLAPCCGPLPG FT DPIIAGMRLGHGLVVHTSDCPVALRARAREPERWINVAWDAQTAKHLPTRLDIVTRNER FT GVLGRLAAEVTAADANIVHVTMHDDAVSTVSLHLTVQVDSRKHLAQVIRAIRHVPQVQK FT IVRVKG" FT misc_feature 100114..100413 FT /note="HMMPfam hit to PF01966, HD domain, score 2.5e-10" FT misc_feature 101131..101322 FT /note="HMMPfam hit to PF02824, TGS domain, score 1.1e-30" FT misc_feature 101890..102111 FT /note="HMMPfam hit to PF01842, ACT domain, score 2.9e-06" FT CDS complement(102133..102861) FT /transl_table=11 FT /gene="glnQ" FT /locus_tag="BPP3008" FT /product="glutamine transport ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1575" FT /db_xref="GOA:Q7W6B0" FT /db_xref="HSSP:1B0U" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W6B0" FT /protein_id="CAE38298.1" FT /translation="MSMVEFHNVTKKFGDSTVLDGITLDIDAGEVVVVVGPSGSGKSTF FT LRCINVLETINDGDLLVGGQSVKGDAAQVREIRREAGMVFQQFNLFPQMTALENVMFGP FT VHTRGAARAEARRQAEELLGKVGLAERMNHYPSELSGGQQQRVAIARALAIKPKLMLFD FT EPTSALDPELRHEVLKVMRDLAEEGMTMIVVTHEMEFARKVGSRLIFIDCGKIAHDGPP FT AELLSNPPSQRLKDFLQHVS" FT misc_feature complement(102220..102777) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 9.6e-66" FT misc_feature complement(102403..102447) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(102733..102756) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(102858..103517) FT /transl_table=11 FT /gene="glnP" FT /locus_tag="BPP3009" FT /product="glutamine transport system permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1574" FT /db_xref="GOA:Q7W6A9" FT /db_xref="InterPro:IPR010065" FT /db_xref="UniProtKB/TrEMBL:Q7W6A9" FT /protein_id="CAE38299.1" FT /translation="MDFDWSVIGTALPNLLDGTLMTVKITFWGLVGGFVVGALIGVARA FT YGPLWLAGLAQVYVAVIRGTPIVVQVMFIYFALPLMIEGMRVDVVAAAIATLIINSGAY FT IAEIVRGSLLSVHKGLKEAGQAMGLPFYKILLYIIGPVAFRRMIPPLGNQCIISLKDSS FT LFIVIGVAELTRQGQEIMASNFRAVEIWSAVAIVYLILTGTMALGLRMLEKRMRIL" FT misc_feature complement(join(102882..102947,103086..103136, FT 103176..103241,103272..103337,103377..103442)) FT /note="5 probable transmembrane helices predicted for FT BPP3009 by TMHMM2.0 at aa 25-47, 60-82, 92-114, 127-144 and FT 190-212" FT misc_feature complement(102972..103184) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 3e-10" FT CDS complement(103586..104338) FT /transl_table=11 FT /gene="glnH" FT /locus_tag="BPP3010" FT /product="glutamine-binding periplasmic protein precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP1573" FT /db_xref="GOA:Q7W6A8" FT /db_xref="HSSP:1GGG" FT /db_xref="InterPro:IPR001638" FT /db_xref="UniProtKB/TrEMBL:Q7W6A8" FT /protein_id="CAE38300.1" FT /translation="MIKAKVAAVLIGASAALLGAVSTASAQDKELVVATDTAFVPFEFK FT QGNTYTGFDIDLWAAIAKELNLKYKLQPMDFNGIIPGLQTKNIDAALAGITIRDDRKKV FT IDFSDPYYESGLAILVSEKNDSIKEAKDLSGKSVAVKTGTATVDFMKSQVPDAKLKLFP FT NIDNAYLELATGRVDAAVHDTPNVQYYANTAGKGRVKVVGTVKSGDFYGIAFPKGSELV FT PQVNKALATLKANGQYDAIYTKWFGKQP" FT misc_feature complement(103595..104248) FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3, score 5.7e-78" FT misc_feature complement(103928..103951) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(104144..104185) FT /note="PS01039 Bacterial extracellular solute-binding FT proteins, family 3 signature." FT misc_feature complement(104261..104338) FT /note="Signal peptide predicted for BPP3010 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.893 between residues 26 and 27" FT CDS 104645..105559 FT /transl_table=11 FT /locus_tag="BPP3011" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1896" FT /db_xref="GOA:Q7W6A7" FT /db_xref="InterPro:IPR005079" FT /db_xref="UniProtKB/TrEMBL:Q7W6A7" FT /protein_id="CAE38301.1" FT /translation="MRPWRGHAYLEALAHEASQALPEIWDELEGLAEGLRMPLVDILLW FT NCRGDLLHKTSDGCTSIAWRGDEDARWIAHNEDGDPFLYGRCHMVDVRTDDAPGYISFY FT YPGSLPGHTFGANRAGLVQTINNVRIRQRHAGVPRMLLARAVLDCATLDDALAVLRDHP FT RAGGFHHTLGAAGEPRLYSVEASPAACSIGEVARGNGHANHLVHPSSEAIGQIVTDSSR FT SRQRHIENLMDHWQPPVDGARLVATLLDREGELPILRCGADDPDEENTLATALFEMRDG FT GLTLQVHDRRDQPALRVTVCPAA" FT CDS complement(105573..109196) FT /transl_table=11 FT /gene="oplaH" FT /locus_tag="BPP3012" FT /product="5-oxoprolinase" FT /EC_number="3.5.2.9" FT /note="ortholog of Bordetella pertussis (BX470248) BP1895" FT /db_xref="GOA:Q7W6A6" FT /db_xref="InterPro:IPR003692" FT /db_xref="UniProtKB/TrEMBL:Q7W6A6" FT /protein_id="CAE38302.1" FT /translation="MKWQFWVDRGGTFTDIVARRPDGATVTAKMLSENPEQYRDAAVAG FT IRKLLGIAPGQPVPADQVECVKMGTTVATNALLERKGERTLLVTTRGFRDALRIAYQSR FT PRLFDRNVQLSEMLYEAVVEADERLDADGTVVRALAEDGLRADLRRVFDDGIRAVAIVF FT MHAWKEGVHERRAAAIAREIGFTQVSTSHEASPLIKFVSRGDTTVVDAYLSPILMRYVE FT QVGSELPGVRLMFMQSSGGLTDAHRFRGKDAILSGPAGGIVGMVRTSELAGFDRVIGFD FT MGGTSTDVSHYAGEFEREVETLVAGVRMRAPMMSIHTVAAGGGSILHFDGARLRVGPDS FT AGANPGPACYRRGGPLAVTDCNVLLGKIQPDFFPSVFGPDADQPLDVAAVRARFAAMAE FT EVRTATGREMSAEQLAEGFLEIAVGNMAEAIKRISVQRGHDVTEYALTTFGGAGGQHAC FT LVADALGMTTVFAHPLGGVLSAYGMGLADQTEMRQKTVEQVLDAALMAQLEAGLDELAG FT QASAELLRQHVPADKVAVQRRLHLKYRGTDTALEVAFGPLEQVRAAFEAGYRQRYSFLM FT PGRELVVETISVEATGGGEAATEAPVTRTRAAPLAARRTIRMFSAGQWRETPLYVREDL FT APGDMMAGPAIISEPNQTTVIEPGWQAEVTPRDHLVLRRVQARAQRRAIGTQADPVMLE FT VFNNLFMSIAEQMGYRLQNTAYSVNIKERLDFSCAIFDAAGNLIANAPHMPVHLGSMGE FT SIKTVMRANASRMRPGDAYVVNDPYHGGTHLPDVTVITPVFDRAGRDILFFVGSRGHHA FT DIGGTTPGSMPPDSRTVEDEGVLFTNFQLVGNGEFRDREAREILASGRWPARNPDQNIA FT DLHAQIAANEKGVQELLRMCDHFGLDVVRAYMGHVQDNAEEAVRRVISVLKDGRYTYRL FT DNGAVIEVAVRVDRQARSAVVDFTGTSGQLENNFNAPGAIAVAAVLYVFRTLVDDEIPL FT NAGCLKPLEIIIPEGSMLRPNPPASVVAGNVETSMCIVNALYGALGVLAASQGTMNNFT FT FGNARYQYYETISGGTGAGPLRIDAAGPADAGFAGTSVVQAHMTNSRLTDPEVLELRFP FT VRLESYEIRHGSGGAGRYRGGDGGVRRVRFLEPMTAAILSNNRRHVPFGLAGGGAGAMG FT RNYVERADGRVEPLGPQDSAELAAGDVFVVETPGGGDYGPA" FT misc_feature complement(105582..107135) FT /note="HMMPfam hit to PF02538, Hydantoinase B/oxoprolinase, FT score 9.6e-273" FT misc_feature complement(107538..109187) FT /note="HMMPfam hit to PF01968, Hydantoinase/oxoprolinase, FT score 4.8e-262" FT misc_feature complement(108357..108386) FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2." FT CDS complement(109275..109787) FT /transl_table=11 FT /locus_tag="BPP3013" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1894" FT /db_xref="InterPro:IPR014601" FT /db_xref="UniProtKB/TrEMBL:Q7W6A5" FT /protein_id="CAE38303.1" FT /translation="MSSTPLIASSAHLASGRAPDLSEVEFGLMIASHAFNRWTVRCMAA FT AGLPDLTANDVMVMHHVYHRQRPKKLADICFTLNVEDTHIVSYSLKKLERHDVVRGDRS FT GKEVFYSVTPKGAEIIKRYAEVREQCLLDGLEAGAAGGLEFTRQLAHTLRSLSGLYDQA FT ARAATSL" FT CDS 109931..110863 FT /transl_table=11 FT /locus_tag="BPP3014" FT /product="putative LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1893" FT /db_xref="GOA:Q7W6A4" FT /db_xref="HSSP:1IXC" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W6A4" FT /protein_id="CAE38304.1" FT /translation="MNIRFLETFIWVAQLRSFKAAAGKLHLTQAAISGRIAALENDLGE FT LLFERGSRDTRLTPAGRTLLDYAQRMLDTDHAMRQALRGSGTLRGRVRLGVVESIVHTW FT FTPFIRRLSQTHPELEIELTAESTRRLQDLLKHGSIDVALQTDPIVGDDVRNRDMGMLK FT MGWICSPAAGIPAQASVAELATHPLVTFPRHSQPHLQLLDVLDAAGVQAGRIHFVSSIA FT ACTQFIEAGLGAATLPLAAVRPGLAAGRYRQVCCTPDLPHLRLVASWRPDRVAGLAEAV FT VRLALDEMRLYAQHNDDALPPLDSGVLAL" FT misc_feature 109937..110116 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.3e-18" FT misc_feature 109979..110071 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 110183..110800 FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 2.1e-37" FT CDS 111027..111731 FT /transl_table=11 FT /locus_tag="BPP3015" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1892" FT /db_xref="UniProtKB/TrEMBL:Q7W6A3" FT /protein_id="CAE38305.1" FT /translation="MTAHPGRAMEKHVAAPIRHERDAMGELFIWTDIDPAHEEDFNQWY FT DREHMAERAGIAGFRWARRYRSQHGRRRYLALYRTEDLHVFGSAAYRQAFERQTPWPLA FT NFARMRDTNRRVMVVSPLAGVGTGAALGLLRLGSVELAARAAALAASAQEIEGVLALRV FT LTPDPQLSTPLPSEDPAARVLDPVLIIDATTEPAAAAAARSLAEQLELPTDGIQTFHLL FT WDLRADDLRAAP" FT misc_feature 111372..111440 FT /note="1 probable transmembrane helix predicted for BPP3015 FT by TMHMM2.0 at aa 116-138" FT CDS 111752..112717 FT /transl_table=11 FT /locus_tag="BPP3016" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1891" FT /db_xref="GOA:Q7W6A2" FT /db_xref="InterPro:IPR018389" FT /db_xref="UniProtKB/TrEMBL:Q7W6A2" FT /protein_id="CAE38306.1" FT /translation="MKTTFAVLAAALAFSAGAQAATSWTMTAEQPDANYLPQNARQFAD FT EVKAATAGALEIKVQSNSTLLKRPEVKRGVQQGVVQIGEVLVSALGNEDPLFEIDSVPF FT LASSFDESEKLWKATRPLLTQRLDKQGIVLVYGSPWPPQGIYTKKPVAALADLKGTRFR FT AYSASTSHMAALMGAVPTTVQTPEVPQAFSTGVIDAMLTSPATGVDGQAWDYVKYYYDA FT QAFIPQSFVIANKRAFQRLPAEVRQAVLDAGAKAEIRGWQTARAKTRELTDTLARNGMS FT VEPLPAQLAKELQAIGATMVSDWSKKAGADGQQLLDAYRK" FT misc_feature 111752..111811 FT /note="Signal peptide predicted for BPP3016 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.991 between residues 20 and 21" FT misc_feature 111827..112675 FT /note="HMMPfam hit to PF03480, Bacterial extracellular FT solute-binding protein, family 7, score 1.8e-16" FT CDS 112731..113222 FT /transl_table=11 FT /locus_tag="BPP3017" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1890" FT /db_xref="InterPro:IPR018062" FT /db_xref="UniProtKB/TrEMBL:Q7W6A1" FT /protein_id="CAE38307.1" FT /translation="MPIFDRIAVASGAVAALFLALIGAIVAAQIASRLLGMQIPAADDF FT AAWSMAASVFLALPYAMLRGDHIRVTLLLQFLPKTAHRPYELAATALGLALSAWAAWQA FT AGFVHESFAYDEVAQGMLRVPLWIPQICMPIGLALLTLMLARRLAMVARGRQPEETAHG FT " FT misc_feature 112731..112814 FT /note="Signal peptide predicted for BPP3017 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.581 between residues 28 and 29" FT misc_feature 112746..112871 FT /note="PS00041 Bacterial regulatory proteins, araC family FT signature." FT misc_feature join(112749..112817,112860..112919,112980..113048, FT 113106..113165) FT /note="4 probable transmembrane helices predicted for FT BPP3017 by TMHMM2.0 at aa 7-29, 44-63, 84-106 and 126-145" FT CDS 113215..114513 FT /transl_table=11 FT /locus_tag="BPP3018" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1888" FT /db_xref="GOA:Q7W6A0" FT /db_xref="InterPro:IPR004681" FT /db_xref="UniProtKB/TrEMBL:Q7W6A0" FT /protein_id="CAE38308.1" FT /translation="MGELAQSLVLIASLLLLLAAGVWVSLALVASGLVALLLFTDAPAG FT IIFATKSWDASANWALTALPLFIWMGEILYRTRLAEDMFSGLGPWGRRLPGRLVHVNVL FT GCGIFAAVSGSSAATAATIGRISLPELKARGYDDGLAIGSLAGAGTLGLLIPPSIVMIV FT YGVAAQVSLIKLFIAGILPGLLLMALFSGYIGVWSLRNPARVPPREPAVPWLTMLARLR FT LLLPVVALIAGVIGSIYASIATATEAATIGVIGALAIAAWGKSLNRRSFIDSLMGATRT FT SCMISFILLGAAYLTSAMSFTGLPANLAEWISSLGLSQYGLIAVLTVFFILMGAFLDGI FT SIVVLTTAVLMPAIQAADIDSIWFGIYLILVVEMAQITPPVGFNLFVIQGITGRNLFEL FT VRMAFPFFLLLVLATAIITIFPAIVTALPLAMR" FT misc_feature 113215..113304 FT /note="Signal peptide predicted for BPP3018 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.995) with cleavage site FT probability 0.485 between residues 30 and 31" FT misc_feature join(113233..113334,113377..113445,113506..113574, FT 113632..113700,113737..113805,113875..113943, FT 114070..114138,114181..114249,114310..114378, FT 114421..114489) FT /note="10 probable transmembrane helices predicted for FT BPP3018 by TMHMM2.0 at aa 7-40, 55-77, 98-120, 140-162, FT 175-197, 221-243, 286-308, 323-345, 366-388 and 403-425" FT misc_feature 113719..113847 FT /note="PS00041 Bacterial regulatory proteins, araC family FT signature." FT misc_feature 113986..114009 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 114666..115751 FT /transl_table=11 FT /locus_tag="BPP3019" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1887" FT /db_xref="GOA:Q7W699" FT /db_xref="InterPro:IPR018389" FT /db_xref="UniProtKB/TrEMBL:Q7W699" FT /protein_id="CAE38309.1" FT /translation="MQRFKGAAAIARPWLPMPCGVLRGMPQFENSITKDVSMYKKLSLL FT AGTIVLAFGAGAQAQTKWDLPTAYPASNLHVENLTQFVKDVDSLSGGKLKITLHNNASL FT YKAPEIKRAVQGNQAQIGEILLTNFANEDPVYELDGLPFLATGYDASFKLYQAQKPFLE FT KKLASQGMMLLYSVAWPPQGIFANRDIKQVSDMKGLKWRAYSPVTAKIAELVGAQPVTV FT QQAELAQAMATGVIDSYMSSGSTGFDTKTYEYIKKFYDTETWLPKNAVLVNKKAFDALD FT PATQQALKKAGAQAEERGWKLSQEKNSWYKEQLAKNGMAIIAPTAELKSGLTEVGKRML FT DDWLKKAGADGQAMIDAYRKQ" FT misc_feature 114858..115706 FT /note="HMMPfam hit to PF03480, Bacterial extracellular FT solute-binding protein, family 7, score 4e-28" FT CDS 115758..116258 FT /transl_table=11 FT /locus_tag="BPP3020" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1886" FT /db_xref="InterPro:IPR007387" FT /db_xref="UniProtKB/TrEMBL:Q7W698" FT /protein_id="CAE38310.1" FT /translation="MRRFLDRLYGAAGLLAGLCTIGVLVSVLAAIIARQVGLNIPGTDA FT YAGYFMAAAGFLALASTFKHGEHIRVTLLLNALSAPGHRRLDIFALCVGAILAAAFAWF FT SVKLAHDSWLFNDISTANDATPLWIPQLTMAAGTILFFIALLDELVRRVRGQGFAKSQQ FT IHE" FT misc_feature 115758..115844 FT /note="Signal peptide predicted for BPP3020 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.995) with cleavage site FT probability 0.954 between residues 29 and 30" FT misc_feature join(115782..115850,115893..115946,116013..116069, FT 116127..116195) FT /note="4 probable transmembrane helices predicted for FT BPP3020 by TMHMM2.0 at aa 9-31, 46-63, 86-104 and 124-146" FT CDS 116388..117548 FT /transl_table=11 FT /locus_tag="BPP3021" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1885" FT /db_xref="GOA:Q7W697" FT /db_xref="InterPro:IPR004681" FT /db_xref="UniProtKB/TrEMBL:Q7W697" FT /protein_id="CAE38311.1" FT /translation="MAVTIWGASSSWTLTALPLFLWMGEILFRTRLSEDLFKGLAPWLN FT RLPGRLLHTNVIGCAIFAAVSGSSAATCTTVGKMTIPELTRRGYPEDKILGTLSGAGTL FT GLLIPPSIIMIVYGVAADVSIAKLFIAGIFPGLLLALLFMGYIAWWAIRHPGAVPAADP FT GISFMQKLKQSRHLIPVLLLIGAVLGSIYTGIATATEAAAVGVVGALILSALQGSLTRT FT SFMTSLLGATRLYCMIALILAGAQFLTLAMGYIGLPRALAEWIGGLGLSQFGLIMALMV FT FFVVLGCFLDGISIVVLTMGVLLPTVQAAGIDLIWFGIFIVFVVEMAQITPPVGFNLFV FT LAGMSGRELPYIARASLPMFFLMIVAVLLLYYLPGIATWLPQHMTL" FT misc_feature join(116400..116468,116682..116750,116769..116837, FT 116916..116975,116994..117062,117090..117158, FT 117177..117245,117255..117308,117327..117395, FT 117438..117506) FT /note="10 probable transmembrane helices predicted for FT BPP3021 by TMHMM2.0 at aa 5-27, 99-121, 128-150, 177-196, FT 203-225, 235-257, 264-286, 290-307, 314-336 and 351-373" FT CDS complement(117574..119325) FT /transl_table=11 FT /gene="fhaC" FT /locus_tag="BPP3022" FT /product="hemolysin activator-like protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1884" FT /db_xref="InterPro:IPR013686" FT /db_xref="UniProtKB/TrEMBL:Q7W696" FT /protein_id="CAE38312.1" FT /translation="MTDATNRYRPGLVVRALVRAGLLFAVAACAQAQLLPGARDLNRID FT DRQRKEQLQRDIERALTRPPVELNPQSEAASPARKPDATSGHTVTVQAVDLDFGVEGRL FT FDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVPPGVVDGVLKLKVEW FT GRIKGWLIDGKPLEGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNGGKTGNITIVP FT ADEYGYSYLDLQLQRRALPRVSLGMDNSGPGTPENGRYKYNASVTANDLLGLNDTLGLY FT IGNRYYRDAGHDAERNYDLMYSVPLGRTRLDLQTGYSTYRNLLKTRYGQYQSAGNSRSF FT GLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTRLDVSSKHYSDVTVGMQYSTQRGAN FT AYFGDLSFTRGVGINNGKYAAYDERGPQGNVSRLNGSLAWTRYMALADQPLQWTSQLGF FT QYSRQQLLNSYQITVGDEYTVRGYNLRTSQSGDSGVYLSNTLTVPVQFSLFGKQASMAP FT FAGVDVGALKSNHPDARTIRMAGLAAGVRFDLPYARLSFTYSKPVGAQPGGAPRAPVWY FT INAGLSF" FT misc_feature complement(119230..119325) FT /note="Signal peptide predicted for BPP3022 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.932) with cleavage site FT probability 0.576 between residues 32 and 33" FT CDS complement(119318..120415) FT /transl_table=11 FT /gene="fimD" FT /gene_synonym="fhaE" FT /locus_tag="BPP3023" FT /product="fimbrial adhesin" FT /note="ortholog of Bordetella pertussis (BX470248) BP1883" FT /db_xref="GOA:Q7W695" FT /db_xref="InterPro:IPR014779" FT /db_xref="UniProtKB/TrEMBL:Q7W695" FT /protein_id="CAE38313.1" FT /translation="MPARVISFCGAALAVWAGLAVQPAMAVDPPVDCGRAIGLHFWSST FT SLISDQTPDGTLIGKPVVGRSLLSRSCEVPDDIKDELSDKHDGEPVDIVLELGSSYKIR FT PQSYGHPGIVVDLPSGSTEETGIAIYIDFGSSPMQKVGERQWLYPQKGEVLFDALAING FT DNAEVRYQAIKVGPLKRPRKLVLSQFPNLFTYKWVFMRGTSQERVLATGTISTDVATST FT IDLKTCRYTSQTVSLPTIQRSALTGVGTTLGTTDFQMPFWCYGRPRVSVYMSAANTQTG FT VDGVALPATGQAAGMASGVGVQLINGKTQQPVKLGLQGKIALPEAQQTESATFSLPMKA FT QYYQTSTSTSAGKLSVTYAVTLNYD" FT misc_feature complement(119324..119755) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00419, Fimbrial protein, score FT 0.0004" FT misc_feature complement(120335..120400) FT /note="1 probable transmembrane helix predicted for BPP3023 FT by TMHMM2.0 at aa 5-27" FT misc_feature complement(120338..120415) FT /note="Signal peptide predicted for BPP3023 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 26 and 27" FT CDS complement(120429..123050) FT /transl_table=11 FT /gene="fimC" FT /gene_synonym="fhaA" FT /locus_tag="BPP3024" FT /product="outer membrane usher protein precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP1882" FT /db_xref="GOA:Q7W694" FT /db_xref="InterPro:IPR018030" FT /db_xref="UniProtKB/TrEMBL:Q7W694" FT /protein_id="CAE38314.1" FT /translation="MKQIPLILAMSLAFAAAAKGESAPDMQAAVNFDSAMLWGGANGAD FT LSRFNYSNALRPGNYIVDIYANNYPLIRQQVRFVAAQTSGQGLKTAPAVACFTYGQLEA FT MQVRLRALDPALVADLKSSGRCEVLGKLFPDSRESFDFGENRLEVSIPQAYTINRFRRD FT ISPDEWDSGITAFRLGYQYNYADYIGGLRAGRRLDLNLYSGFNFKGWYLRNSSTLGWGQ FT GRFTRRSQRTSLQTDIPSWRARLVFGDVFSSGEYFAPYSMRGMLVGSDTAMLPYSERLY FT RPTIRGVARTRANVKVYQAGVLVFQDAVPPGPFAIDDYSPASYGGDLRVVVTEANGAVQ FT TFTVPYASAVRLILPGQTQWSFSAGRYRNYRNDGQDRPWVTQLTGRHGVADGVNLYGGL FT LIAQAYQAGLAGLSWNTPWGAMAADATLSRSQLSTTGNANGSSLRFSYSKTLSGTNTAI FT RLATLRYSSSGFWNFADAVNAGPAETNGRNGRFGLYSLLGRERPRGDFSVTLSQPLGGY FT GSLYVSALRRTYWGSSRVDQQTQLGYSTQVGRVGVNLDVSRTENRRSTEHQVMLNLSIP FT LYGATSSGVVTGSLARTGSAPVQQSVNYSGMSGERDQYTYGLGVQRAGTSAQYALNGSW FT SGTYGEVSGQLTHGRSYSQYQINGSGGLVAHAGGVTFGQYQAGTIGLIQAEAAAGAKVV FT NTRNAAVDRSGYGLVSLTPYSLNEVELSPQDLPLDVQLESTVEQVIPRAGAVVALRFPT FT RHDVAAMLVAEPGSEGALAFGTEVRDGAGKVVGVAGQGASALVRGVSASGTLEVTRADG FT SICRATYDLKSAGQAVHGLPRIALACAPQGGGERGARAAVQAVAQPAPISISGKDHGPD FT IR" FT misc_feature complement(120585..122963) FT /note="HMMPfam hit to PF00577, Fimbrial Usher protein, FT score 0" FT misc_feature complement(122094..122126) FT /note="PS01151 Fimbrial biogenesis outer membrane usher FT protein signature." FT misc_feature complement(122997..123050) FT /note="Signal peptide predicted for BPP3024 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.459 between residues 18 and 19" FT CDS complement(123113..123937) FT /transl_table=11 FT /gene="fimB" FT /gene_synonym="fhaD" FT /locus_tag="BPP3025" FT /product="chaperone protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1881" FT /db_xref="GOA:Q7W693" FT /db_xref="HSSP:1KIU" FT /db_xref="InterPro:IPR018046" FT /db_xref="UniProtKB/TrEMBL:Q7W693" FT /protein_id="CAE38315.1" FT /translation="MNTYACDGALAQSRPQGWFTPAFTVKRQGSMARWRRRLGVAALGA FT AMLASLAPAARASLVITGTRVIYNAGSPETTVKMSNEGQAPALMQAWIDDGNAEAKPDE FT VQVPFFLTPPLARVDPGKGQTLRIFFNGYPDGKTLPSDRESVFWLNVLEVPPKATPEEG FT HGVLQLTIRSRLKLFYRPKGLPGNPLTAAADLTFKRKANGVLEVHNPTPYYVNLQKLEV FT GENGAHGSKTPWMLAPLSSDELRLKGTGAKSVQYWAIDDFGGVTPYQAAIAD" FT misc_feature complement(123128..123373) FT /note="HMMPfam hit to PF02753, Gram-negative pili assembly FT chaperone, C-terminal domain, score 1.7e-31" FT misc_feature complement(123383..123766) FT /note="HMMPfam hit to PF00345, Gram-negative pili assembly FT chaperone, N-terminal domain, score 2.1e-72" FT misc_feature complement(123470..123523) FT /note="PS00635 Gram-negative pili assembly chaperone FT signature." FT misc_feature complement(123758..123823) FT /note="1 probable transmembrane helix predicted for BPP3025 FT by TMHMM2.0 at aa 38-60" FT CDS complement(join(124097..124672,124674..124703)) FT /pseudo FT /transl_table=11 FT /gene="fimA" FT /locus_tag="BPP3026" FT /product="fimbrial protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1880" FT /note="pseudogene due to frameshift after codon 10" FT /db_xref="PSEUDO:CAE38316.1" FT misc_feature complement(124103..124612) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00419, Fimbrial protein, score FT 5.2e-08" FT CDS complement(125038..135816) FT /transl_table=11 FT /gene="fhaB" FT /locus_tag="BPP3027" FT /product="filamentous hemagglutinin/adhesin" FT /note="ortholog of Bordetella pertussis (BX470248) BP1879" FT /db_xref="GOA:Q7W692" FT /db_xref="InterPro:IPR012334" FT /db_xref="UniProtKB/TrEMBL:Q7W692" FT /protein_id="CAE38317.1" FT /translation="MNTNLYRLVFSHVRGMPVPVSEHCTVGNTSCGRTRGQARSGARAT FT SLSVAPNALAWALMLACAGLPLGTHAQGLVPQGQTQVLQGGNKVPVVNIANPNSGGVSH FT NKFQQFNVANPGVVFNNGLTDGVSRIGGALTKNPNLTRQASAILAEVTGTSPSRLAGTL FT EVYGKGADLIIANPNGISVNGLSTLNASNLTLTTGRPSVNGGRIGLDVQQGTVTIERGG FT VNATGLGYFDVVARLVKLQGAVSTEQGKPLADIAVVAGANRYDHATRRATPIAAGARGA FT AAGAYAIDGTAAGAMYGKHITLVSSDSGLGVRQLGSLSSSSAITVSSQGEIALGDATVQ FT RGPLSLKGAGAVSAGKLASGGAVSVAGGGAVTVASASSVGNLAVQGGGKVQATLLNAGG FT TLQVSGRQAVQLGTASSRQVLSVNAGGALKADQLSATRRLDVDGKQAVTLGSAASRNAL FT SVRAGGALKADQLSATRRLDVDGKQAVTLGSVASDGALLVSAGGNLQAKQLVSNAGLDV FT RGQREVSLEAASSVRGMTVAAAGTLAARNLQSKGAIRIQGGQAVSVANANSDAELHVSG FT RGQVDLGDLSAARGADITGEQRVSIGRAHSDGDVNVAARGALSIDSMTALGAIGVQAGD FT SVSAKDMRSRGAVTVSGGGSVNLGDVQSDGQVRATSAGAMTVRDAAAAADLALQAGGAL FT QAGFLKSAGAMTVNGRDAVRLDGAQAGGQLRVSSDGQAALGSLAAKGALTVSAARAATV FT AELKSLDSISVTGGERVSVQSVNSASRVAISAHGALEVGKVSAKSGIGIEGWGAVAADS FT LGSDGAISVSGRDAVRVDHARSLADISLGAEGGATLGAVEAAGSIDVRGGSTVAANSLR FT ANRDVRVSGKDAVRVTAATSGGGLHVSSGRQLDLGAVQARGALALDGGAGVALQSAKAG FT GTLHVQGGEHLDLGTLAAVGAVDVNGTGDVRVAKLVSDAGADLQAGRSMTLGTVDTTGD FT LQARAQQALELGSVKTEGGLQAAAGGALSLAAAEVAGALELSGHGVTVDRASASRARID FT STGSVGIGALKAGAVEAASPRRARRALRQDFFTPGSLVVRAQGNVTVGRGDPHQGVLAQ FT GDIVMDAKGGTLLLRNDVLTENGTVTISADSAVLEHSTIESKISQSALAAKGDKGKPAV FT SVKVAKKLFLNGTLRAVNDNEETIPGRQIDVVDGRPQITDAVTGEERKDESVVSDAALV FT ADGGPIVVEAGELVSHAGGIGNGRNKGNGASVTVRTTGNLVNKGYISAGKQGVLEVGGA FT LTNEFLVGSDGTQRIEAQRIENRGTFQSQAPSGTAGALVVKAAEAIVHDGVMATEGEMQ FT IAGKGGGSPAVTAGAKATTSANKLSVDVASWDNAGRLDIKKGGAQVTVAGRYAEHGKVS FT IQGDYTVSADAIALAAQITQRGGAANLTSRHDTRFSNNIRLMGPLQVNAGGAVSNTDSL FT KVREGVSVTAASFDNEAGAEVMAKSAALTTSGAVRNAGKMQVKEAATIVAASVSNPGTF FT TAGKDLTVTSRGGFDNDGKMESNKDIVIKAEQFGNAGVLDAKHDLTVTASGQADNRGSL FT KAGHDFTVQAQRIDNSGTMAAGHDATLKAPHLRNTGQIVAGHDIHIINSAKLENTGRVD FT ARNDIALDVADFTNTGSLYAEHDATLRLAQGTQRDLVVDQDHILPVAEGTLRVKAKSLA FT TEIETGNPGSLIAEVQENIDNKQAIVVGKDLTLSSAHGNVANEANALLWAAGDLTVKAQ FT NITNERAALIEAGGNARLTAAVALLNKLGRIRAGEDMHLDAPRIENTAKLSGEVQRKGV FT QDVGGGEYGRWSGIGYVNYWLRAGNGRKKAGTIAAPWYGGDLTAEQSLIEVGKDLYLNA FT GARKDEHRHLLNEGVIQAGGHGHIGGDVDNRSVVRTVSAMEYFKTPLPVSLTALDNRAG FT LSPATWNFNSTYELLDYLLDQNRHEYIWGVYPTYTEWSVNTLKNLNLGYQAKPAPTAPP FT MPKMPTLDLRGHTLESAEGRKIFAEYKKQQGEYEKAKAAVQAVEAYGEATRRVHDQLGQ FT RYGKALGGMDAETKEVDGIIQAFAADLRTVYAKQAGQASIDAETDKVAQRYKSQIDAVR FT LEAIQPGRVMLAKALSAALGADWRALGHAELMQRWKDFKAGKRGANIAFYPKEQTVLAA FT GAGLTLSNGAVHNGENAAQNRGRPENLKIGAHSATSVGGSFDALRDVGLEKRLDIDDAV FT AAVLVNPHIFTRIGGAAQGALADAAAGPALARQVRQAPGTDGMVDTRGLGSADALASLA FT SLDAAQGLEVSGRRNAQVADARLAGPSAVAASAVGAADVGVEPVAGDQVDQPVVAVGLE FT QPAAAVRVAPPAVALPRPLFETRIKFIDQSKFYGSRYFFEQIGYQPDRAARVAGDNYFD FT TTLVREQVRRALGGYESRLPVRGVALVAKLMDSAGTVGKALGLKVGVAPTAQQLKQADR FT DFVWYVDTVIDGQKVLAPRLYLTEATRQGITDQYAGGGALIASGGDVNVDTNGHDVSSL FT NGLIQGKRVKVDAGKGRVLVADSKGMGSGIEADEEVDVSGRDIDIEGGKLRGKDVRLKA FT DTVKVATSMRYDGKGRLAARGDGALDAQGGQLHIEAKRLETAGATLKGSKVKLDVDDVK FT LGGVYEAGSSYENKSSTPLGSLFAILSSTTETNQSARANHYGTRIEAGTLEGKMQNLEI FT EGGSVEAAHTDLSVARDARFKAAADFAHAEHEKDVRQLSLDAKVGAGGYEAGFSLGSES FT GLEAHAGRGMTAGAEVKVGYQASHEQSSETEKSYRNANLNFGGGSVEAGNVLDIGGADI FT NRNRYGGAAKGKAGAEEALRMRAKKVESTKYVSEQTSQSSGWSVEVAATASARSSVLTA FT ATRLGDSVAQNVEDGREIRGELMAAQAAAEATQLVTADTAAVALSAGISADFDSSHSRS FT TSQNTQYLGGNLSIEATEGDATLVGAKFGGGDQVSLKAAKNVNLMAAESTFESHSESHN FT FHASADANLGANAVQGAVGLGLTAGMGTSHQITNETGKTYAGTSVDAANVSIDAGKDLN FT LSGSRVRGKHVVLDVEGDINATSKQDERNYNSSGGGWDASAGVAIQNRTLIAPVGSAGF FT NFNTEHDNSRLTNDGAAGVVASDGLTGHVKGDANLTGATIADLSDKGNLKVDGAVNAQN FT LKDYRDKDGGSGGLNVGISSTTLAPTVGVAFGRVAGEDYQAEQRATIDVGQTKDPSRLQ FT VGGGVKGTLNQDAAKATVVQRNKHWAGGGSEFSVAGKSLKKKNQVRPVETPTPDAVDGP FT PSRPTTPPASPQPIRATVEVSSPPPVSVATVEVVPRPKVETAQPLPPRPVPAKAVPVAP FT PKVEVAKVEVVPRPKVETAQPLPPRPVVAEKVTTPAVQPQLAKVETVQPVKPETAKPLP FT KPLPVAKVTEAPPPVMETAQPLPPVKPQKATPGPVAEVGKATVTTVQVQSAPPKPAPVA FT KQPAPAPKPKPKPKPKAERPKPGKTTPLSGRHVVQQQVQVLQRQASDINNTKSLPGGKL FT PKPVTVKLTDENGKPQTYTINRREDLMKLNGKVLSTKTTLGLEQTFRLRVEDIGGKNYR FT VFYETNK" FT CDS 136170..136871 FT /transl_table=11 FT /gene="bvgA" FT /locus_tag="BPP3028" FT /product="virulence factors transcription regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1878" FT /db_xref="GOA:P0A4H4" FT /db_xref="HSSP:1QMP" FT /db_xref="InterPro:IPR001789" FT /db_xref="UniProtKB/Swiss-Prot:P0A4H4" FT /protein_id="CAE38318.1" FT /translation="MTHQCIMRCRIFFSPRNLKHILLIMYNKVLIIDDHPVLRFAVRVL FT MEKEGFEVIGETDNGIDGLKIAREKIPNLVVLDIGIPKLDGLEVIARLQSLGLPLRVLV FT LTGQPPSLFARRCLNSGAAGFVCKHENLHEVINAAKAVMAGYTYFPSTTLSEMRMGDNA FT KSDSTLISVLSNRELTVLQLLAQGMSNKDIADSMFLSNKTVSTYKTRLLQKLNATSLVE FT LIDLAKRNNLA" FT misc_feature 136248..136610 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain, score 1e-28" FT misc_feature 136677..136865 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00196, Bacterial regulatory FT proteins, luxR family, score 4.9e-27" FT misc_feature 136728..136811 FT /note="PS00622 Bacterial regulatory proteins, luxR family FT signature." FT CDS 136880..140596 FT /transl_table=11 FT /gene="bvgS" FT /locus_tag="BPP3029" FT /product="virulence sensor protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1877" FT /db_xref="GOA:P40330" FT /db_xref="HSSP:1DCF" FT /db_xref="InterPro:IPR001789" FT /db_xref="UniProtKB/Swiss-Prot:P40330" FT /protein_id="CAE38319.1" FT /translation="MPAPHRLYPRSLICLAQALLVWALLAWAPAQASQELTLVGKAAVP FT DVEIALDGDDWRWLARKRVLTLGVYAPDIPPFDVTYDERYEGLTADYMAIIAHNLGVQA FT KVLRYPTREQAVGALESGQIDLIGTVNGIEGRLQSLRLSVPYAADHPVLVMPIGARRAP FT PADLAGQRLAVDANYLPRETLQQAYPQATLHYFPSSEQALAAVAYGQADVFIGDALTTS FT HLVSQSYFNDVRVVAPAQIVTGGESFGVRADNTRLLRVVNAVLEAIPASERRSLIYRWG FT LGSSISLDFARPAYSAREQQWMANHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLL FT QLRTGLDFQIIGVDTVEELIAKLRSGEADMAGALFVNAARESVLSFSRPYVRNGMVIVT FT RQDPAAPADADHLDGRTIAMVRNSAAIPLLQQRYPQAKVVTADNPTEAMLLVADGQADA FT VVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATARGQTELISILNKALYSISNDE FT LASIVSRWRGSDGDPRTWYAYRNEIYLLIGLGLLSALLFLSWIVYLRRQIRQRKRAERA FT LNDQLEFMRVLIDGTPNPIYVRDKEGRMLLCNDAYLDTFGVTADAVLGKTIPEANVVGD FT PALAREMHEFLLTRMAAEREPRFEDRDVTLHGRTRHVYQWTVPYGDSLGELKGIIGGWI FT DITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPADQE FT PDRQSIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRLFDGLAR FT QKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLTVTARPDGEAAH FT VQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVM FT RSAPGVGTTVSVDLRLTMIEKSAQATPPAAAAQATPSKPQVSLRVLVVDDHKPNLMLLR FT QQLDYLGQRVVAADSGEAALALWHEHAFDVVITDCNMPGINGYELARRIRAAEAAPGYG FT RTRCILFGFTASAQMDEAQRCRAAGMDDCLFKPIGVDALRQRLNEAAARAALPTPPSPQ FT AAAPATHDATPAAFSAESILALTQNDEALIRQLLEEVIRTNRADVDQLQKLHQQADWPK FT VSDMAHRLAGGARVVDAKAMIDTALALEKKAQGQAGPSPEIDGLVRTLAAQSAALETQL FT RAWLEQRPHQGQP" FT misc_feature 136880..136975 FT /note="Signal peptide predicted for BPP3029 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.992) with cleavage site FT probability 0.816 between residues 32 and 33" FT misc_feature 137072..137731 FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3, score 1.8e-18" FT misc_feature 137804..138466 FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3, score 1.1e-43" FT misc_feature 138500..138568 FT /note="1 probable transmembrane helix predicted for BPP3029 FT by TMHMM2.0 at aa 541-563" FT misc_feature 138623..138817 FT /note="HMMPfam hit to PF00989, PAS domain, score 8.4e-12" FT misc_feature 138734..138757 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 139034..139234 FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain, score 7.6e-23" FT misc_feature 139373..139720 FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 8e-40" FT misc_feature 139796..140176 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain, score 3.4e-40" FT CDS complement(140643..141518) FT /transl_table=11 FT /gene="bvgR" FT /locus_tag="BPP3030" FT /product="regulatory protein BvgR" FT /note="ortholog of Bordetella pertussis (BX470248) BP1876" FT /db_xref="InterPro:IPR001633" FT /db_xref="UniProtKB/TrEMBL:Q7W691" FT /protein_id="CAE38320.1" FT /translation="MIHWTNSARSSFEASLSPSRRTLRARLAPVEGPTVAELRAALKRD FT EFIPAFQPVVDAGTGSLFGVATTIQWAHRHWGLVPEHCYMAALVRDNLHIALAQQLLAQ FT VFDLAAAMRRGNRHVGLFIQPEPICLMSRSYSDDVLRNLDHRGLPPFALTLAVSPSLLQ FT SPYGQQSLHSLRRLHRAGCNLVLTVSTFDAESPPHLDALEICGIALMPELMYALRQGGR FT AGEACRAIAQQASAQRIPVMATGVVDEAMAQAADLLPCRYLLGDHVAPPMTGQRFLYWY FT YRREMPPNYP" FT misc_feature complement(140691..141431) FT /note="HMMPfam hit to PF00563, EAL domain, score 1.9e-08" FT CDS complement(141652..142485) FT /transl_table=11 FT /locus_tag="BPP3031" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1875" FT /db_xref="InterPro:IPR016938" FT /db_xref="UniProtKB/Swiss-Prot:Q7W690" FT /protein_id="CAE38321.1" FT /translation="MRRPVPYHRVAAIMTILSLAGAGHQARLDARGGMLTGPTANLAPG FT HVQANLAILPQAVAGDFLRFCQRNPKPCPLLAVSEPGDPSLPELGLDIDIRTDVPRYRV FT WRDGKLVDEPLDVRGLWRDDLVAFLIGCSFSFEEAMLENGLPVRHIEQGCNVPMYRTNI FT ATHPAGPFSGPLVVSMRPLKAADAIRAIQVTSRFPSVHGAPVHLGDPALIGIADLGRPD FT YGDAVEIRAGEIPVFWACGVTPQSVVAAVRPEFCITHAPGHMLVTDLLNSRLAAF" FT misc_feature complement(142411..142485) FT /note="Signal peptide predicted for BPP3031 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.917) with cleavage site FT probability 0.810 between residues 25 and 26" FT CDS complement(142504..143853) FT /transl_table=11 FT /locus_tag="BPP3032" FT /product="putative amidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1874" FT /db_xref="GOA:Q7W689" FT /db_xref="InterPro:IPR000120" FT /db_xref="UniProtKB/TrEMBL:Q7W689" FT /protein_id="CAE38322.1" FT /translation="MLPTLTQQSLALQEGRDTSSGLTQAALARAADPAGEGARVFTRVY FT AEQARAEARAADALRGAGVTRSAIDGLPISIKDLFDVAGETTMAGSVARQGEPAAVRDA FT VVVRRLRAAGAVIVGRTNMTEFAYSGLGLNPHYGTPRNPWDRATGRIPGGSSSGAAVSV FT TDGMASGAIGSDTGGSVRIPAALCGLAGFKPSAQRVSMQGVLPLSANLDSIGPLAPSVR FT CCATLDAILAGGDDADIPAPAALRGLRLAVPTTLALDGLDAHVSATFAATLAKLAEAGA FT CIDEIAVPEFAQLADINSKGGFTAAEAWAWHRDLIERAADRYDPRVVARIRRGADMSAA FT DYIDLLAARQAWRARVEARIAGYDALVLPTVPVVAPAIADLEASDALFGSTNLLILRNP FT TLINFLDGSALSLPCHEAGTAPVGLMVAAANGSDRHVLAIGMAIEDLLGG" FT misc_feature complement(142543..143793) FT /note="HMMPfam hit to PF01425, Amidase, score 7.7e-90" FT CDS complement(join(143914..144135,144139..144633)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP3033" FT /product="hypothetical protein (Pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1871" FT /note="Pseudogene. This CDS contains an in-frame TAG stop FT codon. The sequence has been checked and believed to be FT correct. No significant database matches" FT /db_xref="PSEUDO:CAE38323.1" FT CDS complement(join(144656..145324,145328..145939)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP3035" FT /product="putative membrane protein (Pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1870" FT /db_xref="PSEUDO:CAE38324.1" FT misc_feature complement(join(144695..144760,144800..144865, FT 144881..144937,144959..145024,145043..145108, FT 145169..145234)) FT /note="6 probable transmembrane helices predicted for FT BPP3035 by TMHMM2.0 at aa 20-42, 62-84, 90-112, 119-138, FT 143-165 and 178-200" FT misc_feature complement(145214..145294) FT /note="Signal peptide predicted for BPP3035 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.843) with cleavage site FT probability 0.565 between residues 27 and 28" FT misc_feature complement(join(145364..145429,145451..145516, FT 145562..145627,145715..145780,145853..145918)) FT /note="5 probable transmembrane helices predicted for FT BPP3036 by TMHMM2.0 at aa 7-29, 53-75, 104-126, 141-163 and FT 170-192" FT misc_feature complement(145877..145939) FT /note="Signal peptide predicted for BPP3036 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.869 between residues 21 and 22" FT CDS complement(145936..146556) FT /transl_table=11 FT /locus_tag="BPP3037" FT /product="hypothetical protein" FT /note="Weakly similar to others eg. Rhizobium loti FT hypothetical protein Mll5171 SWALL:Q98CF5 (EMBL:AP003005) FT (194 aa) fasta scores: E(): 1.6e-06, 24.6% id in 191 aa" FT /db_xref="UniProtKB/TrEMBL:Q7W688" FT /protein_id="CAE38325.1" FT /translation="MTRSEHFRALGGPLRRAESLSRLAVWVGGALTIASVLLISFDVLA FT RKFFGFTTGGADELSSYAFAISTSWALAFATLQRANVRVDVVYQYLPVRVSAVLDWIAL FT VALGVFMVFMTYYAYEVVQTSWAQKSAANTPLATPLWIPQGLWALGLAWMCVTVALMLV FT RASAALVTGDLDLVKEICGVRSAQEEAEEEAAAGERMVKGASA" FT misc_feature complement(join(146068..146133,146200..146265, FT 146326..146376,146422..146487)) FT /note="4 probable transmembrane helices predicted for FT BPP3037 by TMHMM2.0 at aa 23-45, 60-77, 97-119 and 141-163" FT CDS complement(join(146666..146851,146878..147717)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP3038" FT /product="putative transport protein (pseudogene)" FT /note="Pseudogene. Weakly similar to others eg. Pasteurella FT multocida DctP or pm1525 SWALL:Q9CKT1 (EMBL:AE006189) (340 FT aa) fasta scores: E(): 1.1e-07, 24.21% id in 318 aa. FT Contains a frameshift at codon 280." FT /db_xref="PSEUDO:CAE38326.1" FT misc_feature complement(146881..147624) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03480, Bacterial extracellular FT solute-binding protein, family 7, score 1.7e-08" FT misc_feature complement(147652..147717) FT /note="Signal peptide predicted for BPP3039 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 22 and 23" FT CDS complement(148060..148968) FT /transl_table=11 FT /locus_tag="BPP3040" FT /product="putative LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator pa2115 SWALL:Q9I200 FT (EMBL:AE004639) (317 aa) fasta scores: E(): 1.6e-33, 35.78% FT id in 299 aa, and to Alcaligenes eutrophus rubisco operon FT transcriptional regulator CfxR SWALL:CFXR_ALCEU FT (SWALL:P42722) (317 aa) fasta scores: E(): 3.1e-13, 28.52% FT id in 305 aa" FT /db_xref="GOA:Q7W687" FT /db_xref="HSSP:1IXC" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W687" FT /protein_id="CAE38327.1" FT /translation="MIDLKHIETFFWVSTLGSFRAAAEKLNTTQPAISQRIASLEADLG FT VRLFERDARGVSLTGKGQELLSHAERTLQMRHDLMQAAREQNVMSGTVRIGVAETIVQT FT WLPALIEHVHAAYPALVLQIEVDTTHVLRGQLMARQIDVAFLMGPILEARMENIPLCAY FT PLAWVASPLLELGPEPLTLERIGTLPVITYPSSSEPYRQVRDMLTRAGVAAPRMYGSAS FT LAMVVRMTKDGIGTSVIAPVFLDEELARGELRLLNVQADPLPDLSFTASWVQGPDSHAA FT RAIALLAQRTAAEHGGAIGAG" FT misc_feature complement(148090..148713) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 2.8e-32" FT misc_feature complement(148780..148959) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2e-21" FT misc_feature complement(148825..148917) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 149072..150031 FT /transl_table=11 FT /locus_tag="BPP3041" FT /product="conserved integral membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0239 SWALL:Q9I6P9 (EMBL:AE004462) (292 aa) fasta FT scores: E(): 2.8e-36, 39% id in 300 aa, and to Ralstonia FT solanacearum probable transmembrane protein Rsp0133 or FT rs02987 SWALL:Q8XTH7 (EMBL:AL646076) (316 aa) fasta scores: FT E(): 4.8e-29, 35.42% id in 319 aa" FT /db_xref="GOA:Q7W686" FT /db_xref="InterPro:IPR000620" FT /db_xref="UniProtKB/TrEMBL:Q7W686" FT /protein_id="CAE38328.1" FT /translation="MHRRQSGLAARPPASTTPTPFTARPLIGVALLILSMWTLSGLDAS FT GKWVMAAGVPLLVLCWVRYLVHLVLVLTLVLPARGLRILRATRPREQIVRGAAMFCATL FT LFFTTLSYLPQAEATAINFLAPLIVLSIAPWVLKEPPRLSRWVAAGVAFLGVLIVIRPD FT GGLHPLGVMFGLLTACCFAAQYIATRKVAGDDPYTSLIWSGAVGALCLTAALPFILPPA FT MPVLRELSLGNWLLLSTGVSGALGHLLQIGAYRNAAASTLAPFVYLQIVSATTIGWLFW FT GHFPDAITWLGIAIICASGSVIGVLEWRRGRRLAPAAT" FT misc_feature join(149132..149191,149219..149287,149348..149416, FT 149426..149479,149498..149551,149564..149632, FT 149669..149728,149771..149830,149849..149917, FT 149930..149989) FT /note="10 probable transmembrane helices predicted for FT BPP3041 by TMHMM2.0 at aa 21-40, 50-72, 93-115, 119-136, FT 143-160, 165-187, 200-219, 234-253, 260-282 and 287-306" FT misc_feature 149180..149554 FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6, score 6.7e-06" FT misc_feature 149606..149986 FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6, score 1.2e-06" FT CDS complement(150035..150706) FT /transl_table=11 FT /locus_tag="BPP3042" FT /product="probable ATP-binding ABC transporter protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1734" FT /db_xref="GOA:Q7W685" FT /db_xref="HSSP:1F3O" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W685" FT /protein_id="CAE38329.1" FT /translation="MDNGNSIEVKGLGKRVADAGGELSILDGIDFTVRAGSAVAITGSS FT GSGKSTLLGLLAGLDVPSSGSVHLAGQDLFALDEDGRARLRASHVGFVFQSFQLLPNLT FT ALENVMLPLELAGQPAREAAQAMLRRVGLGERLHHYPRTLSGGEQQRVSLARAFVVQPD FT LLFADEPTGSLDAATGETVIDLMFDLHREHGTTLVLVTHDPELAARCGRQLVLAAGRLQ FT D" FT misc_feature complement(150050..150601) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 3.2e-60" FT misc_feature complement(150233..150277) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(150557..150580) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 150765..151373 FT /transl_table=11 FT /gene="tesA" FT /gene_synonym="apeA" FT /gene_synonym="pldC" FT /locus_tag="BPP3043" FT /product="acyl-CoA thioesterase I precursor" FT /EC_number="3.1.2.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP1733" FT /db_xref="GOA:Q7W684" FT /db_xref="HSSP:1JRL" FT /db_xref="InterPro:IPR000169" FT /db_xref="UniProtKB/TrEMBL:Q7W684" FT /protein_id="CAE38330.1" FT /translation="MPAQAQTAAAPTGSAPHAVLVVGDSLSAEYGLRRGSGWVPMLAQR FT VSQQYPNYRVVNASISGDTTSGGLARLPALLRQHAPAVVVLELGSNDALRGLALDMTER FT NLRAMAQASRQAGASVLVVGMQIPPNYGRDYTQRFAQVFPAVAEQEKARLVPFLMEGIA FT TNRAMFQADGIHPNEDAQPALLDNVWPVLEPMLAQPAAD" FT misc_feature 150816..151061 FT /note="HMMPfam hit to PF00657, Lipase/Acylhydrolase with FT GDSL-like motif, score 1.7e-10" FT CDS complement(151355..153370) FT /transl_table=11 FT /gene="ppiD" FT /locus_tag="BPP3044" FT /product="peptidyl-prolyl cis-trans isomerase D" FT /EC_number="5.2.1.8" FT /note="ortholog of Bordetella pertussis (BX470248) BP1732" FT /db_xref="GOA:Q7W683" FT /db_xref="HSSP:1EQ3" FT /db_xref="InterPro:IPR015391" FT /db_xref="UniProtKB/TrEMBL:Q7W683" FT /protein_id="CAE38331.1" FT /translation="MRFLAAWRGEGSRKRGNRGSMFEIIRTHRRWMQLILLLLIVPSFM FT LVGVQGYDSFINREPELATVAGQPVTRSEFDQAHRNQLEQLRQRLGSQFDPAMIDTPAM FT REQLLNQLIDQRLLAVVAADNGFSVSDGTLRNTIAAIPQVQDNGRFSPERYRQVLAAQG FT MSPTSFEAGLRRDLAVARVLDPISQSASVPAEVARSVEAALTQRRTVQLRQFAASDFRA FT KVTVSPQDIQAWYDANQEQLRVPEQVQAQYLVLDEAAATEGVQVKDEDIASYYEQNKSR FT FGQPERRRVSHIMISIPPGASEEARKAAAAKAQEIAAQAAADPAGFAELARKNSQDTGS FT AAQGGDLGWAPLPAPLQQAAQALAKDQVSGVVDTPTAFHILKVTDFQPGSVKPLSEVKD FT EVVSEIRKQLASARFADMATDMTRLVYDQRDSLQPTADKLGLKLRTAGGITRTGLLPAE FT QAGAGSAAGGDDAQLLDNPRVRQVLFSPDVLREKLNSGVIELTPDTMLAVRVAAVEPSH FT IPPLEQVRASIEDRLLGERAAQAARQAGEAALKSVQADASATPEGFAPAIVVSRQDAQN FT LPRRVLDAVMRQAPSPLPAYTGVELGADYVVARIEKVEAGQSTEQDLDLLKTQLSGAWG FT QAEDAAVLRQLRDQYKVQILPEAAEAIKGDAQSAAG" FT misc_feature complement(152216..152518) FT /note="HMMPfam hit to PF00639, PPIC-type PPIASE domain, FT score 1.7e-26" FT misc_feature complement(152327..152392) FT /note="PS01096 PpiC-type peptidyl-prolyl cis-trans FT isomerase signature." FT misc_feature complement(153203..153268) FT /note="1 probable transmembrane helix predicted for BPP3044 FT by TMHMM2.0 at aa 34-56" FT CDS 153553..154302 FT /transl_table=11 FT /gene="ugpQ" FT /locus_tag="BPP3045" FT /product="glycerophosphoryl diester phosphodiesterase" FT /EC_number="3.1.4.46" FT /note="ortholog of Bordetella pertussis (BX470248) BP1731" FT /db_xref="GOA:Q7W682" FT /db_xref="InterPro:IPR017946" FT /db_xref="UniProtKB/TrEMBL:Q7W682" FT /protein_id="CAE38332.1" FT /translation="MTAPLPAWPYSPYIAHRGGGRLAPENTLAAMRVGAAHGFTMFEFD FT VKLSRDNVEVLLHDGDVDRTSNGHGPAASKTYAELAQLDAGSWYAPQYAGEPVPTFSAV FT ARYALANGIACNVEIKPCPGRKAETGAAVARAAAALWQDAQPAPLLSSFAEPALHAARG FT AAPQLPRALLVERVPADWLERLRKYDCIALNINQRDASRELVDAVHQAGYRIAAWTVND FT PARARLLLDWGMDAIFTDELATIRPAV" FT misc_feature 153598..154290 FT /note="HMMPfam hit to PF03009, Glycerophosphoryl diester FT phosphodiesterase family, score 4e-53" FT CDS 154315..155178 FT /transl_table=11 FT /locus_tag="BPP3046" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1730" FT /db_xref="InterPro:IPR007473" FT /db_xref="UniProtKB/TrEMBL:Q7W681" FT /protein_id="CAE38333.1" FT /translation="MFSYRHAFHAGNHADVLKHAILVHVLDYMNRKEAPYWVVDTHAGA FT GLYALGSDWASKNAEHADGVARLWELSGLPALLADYVARIRDYNTDGVLRHYPGSPWLT FT LDVLRERDRLRLFEMHPSESDVLVRNLERRNERTALRQTTVFAADGFEGVKALLPPPTR FT RGLVLIDPSYEDKQDYRRTLTAVREGVKRFATGTFVVWYPLVQRREASEMARQLERLPV FT KSWLHATLTVRKPAADGFGLHGSGMFLVNPPWTLHDALKPAMPLLARELTQDDRAGFTL FT QYRENP" FT CDS complement(155182..156597) FT /transl_table=11 FT /locus_tag="BPP3047" FT /product="putative pyridine nucleotide-disulfide FT oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1729" FT /db_xref="GOA:Q7W680" FT /db_xref="InterPro:IPR013027" FT /db_xref="UniProtKB/TrEMBL:Q7W680" FT /protein_id="CAE38334.1" FT /translation="MKTLHTDVAIIGAGTAGLAAYRAARAAGKRALLIEGGQYGTTCAR FT VGCMPSKLLIAAAEAAHAAAHGGPFGVHIDGAVRIDGAQVMARVKSERDRFVGFVLEGV FT ENIPAEDKLRGMARFVEDTVLRVDGHTEVRAGSVVIASGSRPAVPPPFLALGDRLVVND FT DVFAWDTLPARVAVFGPGVIGLELGQALARLGVQVRVFGVSGSLGGITDPRVRQSARKA FT FQQEFYLDPDARVLETKRVGDEVEVRYVALDNTECTERFDYALVATGRRPNVDGLDLHN FT TSLALDARGVPHFDRHTMQAGQAPVFIAGDANADAPLLHEAADEGRIAGENAARYPDVA FT PGLRRAALGVVFSDPQIALVGTPFARLESGTFVAGEVDFGDQGRSRVMLRNRGMLRVYA FT DIESGRFVGAEMVGPSAEHIGHLLAWAAQQSLTVAQMLEMPFYHPVVEEGLRTALRDAA FT ARLAQARPQRLAA" FT misc_feature complement(155236..155553) FT /note="HMMPfam hit to PF02852, Pyridine FT nucleotide-disulphide oxidoreductase, dimerisation domain, FT score 6.3e-09" FT misc_feature complement(155635..156579) FT /note="HMMPfam hit to PF00070, Pyridine FT nucleotide-disulphide oxidoreductase, score 1.6e-36" FT misc_feature complement(156520..156597) FT /note="Signal peptide predicted for BPP3047 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.832) with cleavage site FT probability 0.661 between residues 26 and 27" FT CDS complement(156731..157459) FT /transl_table=11 FT /locus_tag="BPP3048" FT /product="putative glutaredoxin" FT /note="ortholog of Bordetella pertussis (BX470248) BP1728" FT /db_xref="GOA:Q7W679" FT /db_xref="HSSP:1FOV" FT /db_xref="InterPro:IPR012335" FT /db_xref="UniProtKB/TrEMBL:Q7W679" FT /protein_id="CAE38335.1" FT /translation="MLQNREGQRVPSVTFPVRENNAWKQVTTDDVFKNKTVVVFSLPGA FT FTPTCSSTHLPRYNELAPAFFAAGVDSIVCVSVNDTFVMNEWAKDQESANVTLLPDGNG FT EFTDGMGMLVDKKDLGFGKRSWRYAMLVKDGVVEKMFIEPEKEGDPFEVSDADTMLAYV FT APQARKPDRVVVFSKPGCPFCVDAKALLKGKGFDPIEIPLDNKVRGRVIGAVSGGDTAP FT QVFINGKLIGGFDALKAYLA" FT misc_feature complement(156776..156946) FT /note="HMMPfam hit to PF00462, Glutaredoxin, score 1.1e-11" FT misc_feature complement(156887..156937) FT /note="PS00195 Glutaredoxin active site." FT misc_feature complement(156977..157444) FT /note="HMMPfam hit to PF00578, AhpC/TSA family, score FT 6.4e-38" FT CDS complement(157598..157798) FT /transl_table=11 FT /locus_tag="BPP3049" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1727" FT /db_xref="GOA:Q7W678" FT /db_xref="InterPro:IPR006121" FT /db_xref="UniProtKB/TrEMBL:Q7W678" FT /protein_id="CAE38336.1" FT /translation="MTIAFHVPDMTCGHCVKSITQAVQQAVPQALVQIDLAARRVTVEG FT AAAAEPVAQAIRAAGYAVQAA" FT misc_feature complement(157604..157792) FT /note="HMMPfam hit to PF00403, Heavy-metal-associated FT domain, score 5.9e-07" FT misc_feature complement(157691..157780) FT /note="PS01047 Heavy-metal-associated domain." FT CDS 157974..158372 FT /transl_table=11 FT /locus_tag="BPP3050" FT /product="MerR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP1726" FT /db_xref="GOA:Q7W677" FT /db_xref="HSSP:1Q06" FT /db_xref="InterPro:IPR015358" FT /db_xref="UniProtKB/TrEMBL:Q7W677" FT /protein_id="CAE38337.1" FT /translation="MNIGDAAQASGISAKMIRYYESIGLIGPAARTESGYRVYGDAELH FT TLRFVRRARDLGFSVEQMNELLALWRDRSRTSADVKRIALEHVATLERKADELRQMADT FT LKHLAHHCHGDTRPDCPIIEELSNTGQR" FT misc_feature 157983..158051 FT /note="PS00552 Bacterial regulatory proteins, merR family FT signature." FT misc_feature 157983..158090 FT /note="HMMPfam hit to PF00376, Bacterial regulatory FT proteins, merR family, score 9.4e-13" FT CDS complement(158396..159850) FT /transl_table=11 FT /locus_tag="BPP3051" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1725" FT /db_xref="GOA:Q7W676" FT /db_xref="InterPro:IPR010280" FT /db_xref="UniProtKB/Swiss-Prot:Q7W676" FT /protein_id="CAE38338.1" FT /translation="MARALLQCRPACVSGLCEMVDVLNIESLDLEARGIAHRDGKVLFV FT EGALPGERVTVQTVRRKPSYEIAKVEEILRPSSQRVAPRCPHFGVCGGCAMQHLAPAAQ FT VAIKQRALEDTFWHVGKLKPARILPPLYGPTWGYRYRARLSVRVVPKKGGVLVGFHERK FT SSYVADMRECHVLPPAVSRLLLPLRAMIAAMSAPDRMPQIEVALGDEAIVLVLRHLLPL FT TDGDIAVLRAFAAEHGVQWWLQSKGPDTVHPLEREHADALAYTLPEFGLRMPYRPTDFT FT QVNHAINRAMVSRALKLLDVQPQDRVADLFCGLGNFTLPLATQGREAVGVEGSKALTDR FT AHEAAARHGLGERTRFATLNLFEVDVQWLRGLGYFDRMLIDPPREGAQAVVQALSLLAP FT GERPRRIVYVSCNPGTLARDAAIMVHEGGYALRSAGVINMFPHTGHVESIAVFESLDEA FT TVLQAQAQARQKAREEAERLAEAAAA" FT misc_feature complement(159635..159814) FT /note="HMMPfam hit to PF01938, TRAM domain, score 0.022" FT CDS complement(159915..160664) FT /transl_table=11 FT /locus_tag="BPP3052" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1724" FT /db_xref="InterPro:IPR010239" FT /db_xref="UniProtKB/TrEMBL:Q7W675" FT /protein_id="CAE38339.1" FT /translation="MKKPLFALPLVLAVCAAGARAEPTDLGAGFSLSGNAAMVSDYRFR FT GYSQTDFRPAIQLGFDLTHTSGLYLGNWNSNVSDFVFTDGNLEMDFYGGWKGEAGGGVG FT LDVGVLHYYYPGSSSPKGGNYNNTDLYLGVSYANYSLKYSYTPGDFFSTPDTKGTWYLD FT GTATFDLGDGWGLVGHLGYQKLKKAQDMDGDALGHYVDYKLGVTKDLSGWVLGLAAVGA FT TRDNWLPTKNGHPSGRLGAVFSVARTF" FT misc_feature complement(160602..160664) FT /note="Signal peptide predicted for BPP3052 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.975 between residues 21 and 22" FT CDS complement(160953..161642) FT /transl_table=11 FT /locus_tag="BPP3053" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1723" FT /db_xref="UniProtKB/TrEMBL:Q7W674" FT /protein_id="CAE38340.1" FT /translation="MGRVRNPAETAPPAQWQRVSTFQEITMSRHAIRSTLAGLTLALSA FT GVVAAPALAATQEGPAAGHMKEQGRHHHKKMMRDGVWLPGVGPLSKAQIESLKLDAKQQ FT GLVDQARQAQRDVHKSRRDAGATGRDALKAQLDSGKLDPRALLAESDKRHEQFRAQATQ FT VRDKWLAVWDSLNEVQRGQVTEIAKANQARMSERHARMQERMQERMQKRHAEGGQSAAP FT AGAATAN" FT misc_feature complement(161475..161540) FT /note="1 probable transmembrane helix predicted for BPP3053 FT by TMHMM2.0 at aa 34-56" FT misc_feature complement(161481..161642) FT /note="Signal peptide predicted for BPP3053 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.992) with cleavage site FT probability 0.973 between residues 54 and 55" FT CDS complement(161669..162448) FT /transl_table=11 FT /locus_tag="BPP3054" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1722" FT /db_xref="GOA:Q7W673" FT /db_xref="InterPro:IPR019288" FT /db_xref="UniProtKB/TrEMBL:Q7W673" FT /protein_id="CAE38341.1" FT /translation="MTPTLVFDLETIPDVAGLRRLNDWGGEVSDLEVVERAFAARREAV FT GHDFLPLHLHQVAVVGCVFRDDQGFRVKTLGQPDDPEAALLSGFFKTIERYTPRLVSWN FT GSGFDLPVLHYRSLIHGVPAPRYWDTGDEDRDFKFNNYISRYHNRHIDLMDLLAKYNGR FT ANAPLDELAKLCGFPGKLGMDGSKVWEAWNQGKADEVRAYCETDVVNTWLVYCRFRFLR FT GELDRVAYDAEIALVRDTLAASDAPHWKEYLAAWDAA" FT CDS complement(162445..163329) FT /transl_table=11 FT /locus_tag="BPP3055" FT /product="putative peptidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1721" FT /db_xref="GOA:Q7W672" FT /db_xref="InterPro:IPR018392" FT /db_xref="UniProtKB/TrEMBL:Q7W672" FT /protein_id="CAE38342.1" FT /translation="MLNGQLQLTESQSVAGASAAAASRPVLWAGVLAIALLAGCASKGP FT RAPVVDLTGQPGASGPTDGSYVVKPGDTLYKIARANNVDIENLKRWNNLTDPNQISVGQ FT VLRLSSSGAGGAQTTPVTSSKPQPKPLDQGSAETPAGGMEAGAGGETGGATTPPAATLP FT DPKPARAADAAVINWGWPANGAILQTFNSNTKGIDLAGSLGDPVIAAADGKVMYSGNGV FT RGLGNLIIINHQNGFITAYAHNRALLVKTGQNVKRGAKIAEIGETDTTSPRLHFEIRRQ FT GTPVDPMQYLPPR" FT misc_feature complement(162460..162708) FT /note="HMMPfam hit to PF01551, Peptidase family M23/M37, FT score 4.2e-33" FT misc_feature complement(163003..163134) FT /note="HMMPfam hit to PF01476, LysM domain, score 2.2e-18" FT CDS complement(163347..164126) FT /transl_table=11 FT /gene="pcm" FT /locus_tag="BPP3056" FT /product="protein-L-isoaspartate O-methyltransferase" FT /EC_number="2.1.1.77" FT /note="ortholog of Bordetella pertussis (BX470248) BP1720" FT /db_xref="GOA:Q7W671" FT /db_xref="HSSP:1JG1" FT /db_xref="InterPro:IPR000682" FT /db_xref="UniProtKB/Swiss-Prot:Q7W671" FT /protein_id="CAE38343.1" FT /translation="MRKRVDPPAGGRLAPGITPANSNTRISAGALPRAPAQPAPLASGN FT LGLNSDRLRQAMVQRLRTQGIVDERVLNAMAAVPRHLFVDEALASRAYEDAALPIGHSQ FT TISQPWVVARMIAAVCEDRAPARVLEVGAGCGYQAAVLAQIVREVHAIERIRGLYELAR FT GHLRALRLATRVRLIHGDGMLGVPGVAPFDAIVVAAAGLAIPQALLDQLAPGGRLIAPE FT GSTHQRLVLIERTGATAWSRKELEAVRFVPLRAGIQS" FT misc_feature complement(163353..163970) FT /note="HMMPfam hit to PF01135, FT Protein-L-isoaspartate(D-aspartate) O-methyltransferase FT (PCMT), score 5.7e-68" FT misc_feature complement(163542..163589) FT /note="PS01279 Protein-L-isoaspartate(D-aspartate) FT O-methyltransferase signature." FT CDS complement(164111..164869) FT /transl_table=11 FT /gene="surE" FT /locus_tag="BPP3057" FT /product="stationary-phase survival protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1719" FT /db_xref="GOA:Q7W670" FT /db_xref="InterPro:IPR002828" FT /db_xref="UniProtKB/Swiss-Prot:Q7W670" FT /protein_id="CAE38344.1" FT /translation="MRILVSNDDGYNAPGLEALVEALSGLGELTVVAPETNHSGASNSL FT TLNRPLTVRTASNGFIYVNGTPSDCVHVALTGLMDARPDLVVSGINNGANMGDDTLYSG FT TVAAASEGYLFGIPSIAFSLIEKGWQHIESAARAARQVVERQIAQPLAAPVLLNVNIPN FT RRYEDMKGYAVTRLGKRHPSEPVVRTTTPYGDTVYWIGPVGLAADATPGTDFHATAQGQ FT VSVTPLRLDLTQHSQLDDVRNWAEPLCVNA" FT misc_feature complement(164312..164869) FT /note="HMMPfam hit to PF01975, Survival protein SurE, score FT 3.2e-82" FT CDS 164995..165642 FT /transl_table=11 FT /locus_tag="BPP3058" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1718" FT /db_xref="GOA:Q7W669" FT /db_xref="InterPro:IPR003811" FT /db_xref="UniProtKB/Swiss-Prot:Q7W669" FT /protein_id="CAE38345.1" FT /translation="MPATMVLTAPSLLSSSALIVLAYLIGSIPFAVVVSKLMGLQDPRS FT YGSGNPGATNVLRTGNKTAAALTLLGDAAKGWFALWLARALVPELSWGAYALVALAVFL FT GHLYPLFLRFKGGKGVATALGVLMAIEPWLAVATIATWLIVAVFSRYSSLAALVAAFFA FT PVYYVFGSGAAWHARLEVGLAIAVISALLFYRHRANIARLLKGTESRIGKKK" FT misc_feature 164995..165060 FT /note="Signal peptide predicted for BPP3058 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.978) with cleavage site FT probability 0.879 between residues 22 and 23" FT misc_feature join(165028..165096,165184..165243,165262..165330, FT 165358..165426,165445..165504,165514..165582) FT /note="6 probable transmembrane helices predicted for FT BPP3058 by TMHMM2.0 at aa 12-34, 64-83, 90-112, 122-144, FT 151-170 and 174-196" FT misc_feature 165049..165612 FT /note="HMMPfam hit to PF02660, Domain of unknown function FT DUF, score 8.4e-66" FT CDS complement(165687..166727) FT /transl_table=11 FT /gene="gcp" FT /locus_tag="BPP3059" FT /product="probable glycoprotease" FT /EC_number="3.4.24.57" FT /note="ortholog of Bordetella pertussis (BX470248) BP1716" FT /db_xref="GOA:Q7W668" FT /db_xref="InterPro:IPR017861" FT /db_xref="UniProtKB/Swiss-Prot:Q7W668" FT /protein_id="CAE38346.1" FT /translation="MIILGFESSCDETGVAAVCTERGLLAHALHTQIAMHQEYGGVVPE FT LASRDHIRRVVPLTRQVLAEAGLTLADVGAVAYTAGPGLAGALLVGASVAQALAWSRAL FT PAIGIHHLEGHLLSPLLAEPRPEFPFVALLVSGGHTQLMRVDGVGRYELLGETLDDAAG FT EAFDKSAKLMGLGYPGGSALARLAEQGDASRYDLPRPMLHSGDLDFSFSGLKTAVLTRV FT KAATRDGGELGEQDRADLAAATQAAIVEVLAAKAIRALKQTGLRRLVVAGGVGANALLR FT AHLARALKPLRAEAYFPPLSLCTDNGAMIAFAAAERVKAGLADLREGDHAFTVRPRWDL FT ADIQAG" FT misc_feature complement(165771..166727) FT /note="HMMPfam hit to PF00814, Glycoprotease family, score FT 1.2e-153" FT CDS 166862..168154 FT /transl_table=11 FT /locus_tag="BPP3060" FT /product="permease" FT /note="ortholog of Bordetella pertussis (BX470248) BP1715" FT /db_xref="GOA:Q7W667" FT /db_xref="InterPro:IPR006043" FT /db_xref="UniProtKB/TrEMBL:Q7W667" FT /protein_id="CAE38347.1" FT /translation="MLEKLFQLRDHATTVRTEIVAGLTTFLTMSYIIFLNPDILSSTGM FT DRNAVFVATCLAAALGSLIMALVANWPIGMAPGMGLNAFFAFTVVKTMGYTWEQALGAV FT FISGVIFLFLTISGIRAWLIRGIPHSLRSAIAAGIGLFLAIIALSNANIVVAHPATKVT FT LGDLREPGPLFAILGFFIIAALGALHVRGAILIGILSVTVLSMLLGYNQFNGIFSSPPS FT LAPTFMQLDILGALHTGFVHVILVFVLVEVFDATGTLMGIAKRAGLVPEDRPNRLGRAL FT FADSTAIVAGSMLGTSSTTAYVESASGVQAGGRTGLTALVVALLFLAALFIAPLAGSVP FT AYATAPALLYVAGLMMRELIDIDWNDVSEATPAALTALVMPFTYSIANGLAFGFISYVV FT LKTCTGRIREVHPATWLVAILFIVRYAFFPE" FT misc_feature join(166895..166963,167006..167074,167093..167152, FT 167162..167230,167264..167332,167375..167428, FT 167441..167509,167552..167620,167819..167887, FT 167990..168058,168092..168145) FT /note="11 probable transmembrane helices predicted for FT BPP3060 by TMHMM2.0 at aa 12-34, 49-71, 78-97, 101-123, FT 135-157, 172-189, 194-216, 231-253, 320-342, 377-399 and FT 411-428" FT misc_feature 166907..168037 FT /note="HMMPfam hit to PF00860, Permease family, score FT 1.8e-34" FT CDS 168360..169385 FT /transl_table=11 FT /locus_tag="BPP3061" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1714" FT /db_xref="GOA:Q7W666" FT /db_xref="InterPro:IPR019949" FT /db_xref="UniProtKB/TrEMBL:Q7W666" FT /protein_id="CAE38348.1" FT /translation="MSVLASVPFSVLDLAPIVQGGTAAQAFRNTVDLARHVEGWGYRRF FT WLAEHHNITGVASSATAVLIGHVAAHTSTLRVGSGGVMLPNHAPLIIAEQFGTLESLFP FT GRIDLGLGRAPGSDGATQQALRRGPRSGLDFPELLHELRAYLAPARPGQPVRAIPGAGT FT DVPIWLLGSSDFSARLAAELGLPFSFAGHFSPEGMAAMRLYRQLFKPSQTLARAHAMIG FT VPVVAADTDEQAHFLSTTQQLKFLSLIRGNRLPLQPPVESMDGIWNEWERSAVQQRLGA FT AIVGGPDTVKRELESLVAQTQADEVMIVSDFYDFSDRLRSYEIVASLKQDAGVSTRTAN FT A" FT misc_feature 168378..169265 FT /note="HMMPfam hit to PF00296, Luciferase-like FT monooxygenase, score 6.5e-31" FT CDS 169521..169904 FT /transl_table=11 FT /gene="trxC" FT /locus_tag="BPP3062" FT /product="thioredoxin 2" FT /note="ortholog of Bordetella pertussis (BX470248) BP1713" FT /db_xref="GOA:Q7W665" FT /db_xref="HSSP:1KEB" FT /db_xref="InterPro:IPR013766" FT /db_xref="UniProtKB/TrEMBL:Q7W665" FT /protein_id="CAE38349.1" FT /translation="MSIVELTKDTFQDAITPDGTLIIDFWAPWCGPCRGFAPVFEQAAE FT QHPDVTFAKVNTDVEQELAVALGIRSIPTLMVFREKVLLFSQPGALSAGQLGELLTKVK FT EVDMAEVHRDIAQARENGEGEQA" FT misc_feature 169524..169835 FT /note="HMMPfam hit to PF00085, Thioredoxin, score 2.3e-27" FT misc_feature 169584..169640 FT /note="PS00194 Thioredoxin family active site." FT CDS complement(169923..170510) FT /transl_table=11 FT /locus_tag="BPP3063" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1712" FT /db_xref="HSSP:1VI7" FT /db_xref="InterPro:IPR001498" FT /db_xref="UniProtKB/TrEMBL:Q7W664" FT /protein_id="CAE38350.1" FT /translation="MMHTLAAACRHQEEIKKSRFAAYAAPVGTIAEAMAHFAAHSDPAA FT THNCWAYRIGNEYRFNDDGEPGGTAGRPILQAIDGQGLDRVAVLVVRWFGGIKLGAGGL FT VRAYGGCAANCLRAGERLPVIALATVRCRCGFAELPLLQARLAQAGASVRSETFDADGA FT QLELDVPCAALEELARTFANITRGRGGWDVQA" FT misc_feature complement(170151..170468) FT /note="HMMPfam hit to PF01205, Uncharacterized protein FT family UPF0029, score 1e-49" FT misc_feature complement(170211..170300) FT /note="PS00910 Uncharacterized protein family UPF0029 FT signature." FT CDS complement(170548..171387) FT /transl_table=11 FT /locus_tag="BPP3064" FT /product="putative substrate-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1710" FT /db_xref="UniProtKB/TrEMBL:Q7W663" FT /protein_id="CAE38351.1" FT /translation="MIAMTAPSTSHLSRLCLAALLAMALPALPGAAADPLAAARARGVL FT VVGVPFLADAPLAGAKVRTPERLDGVAAERLARQLGLPLQLRRLAAGDAAAQLASGAVD FT LVLADRRDGAPLAAQAPGMAVVGTGYATAPKAVIRGDTALRRWQDVAGHSVCMADAAQG FT AQALAQRHGATVRTYRAPSDALVAVREGACDLALIDDAVWAPLMKFPEWKKFSATLAPQ FT GPRAELVWVAAPADAAWLAAQMQAWRREGAWTAMTAKWARDVAFDVYLDQEVPDCHG" FT misc_feature complement(171292..171387) FT /note="Signal peptide predicted for BPP3064 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.838 between residues 32 and 33" FT CDS complement(171415..172188) FT /transl_table=11 FT /locus_tag="BPP3065" FT /product="putative permease of ABC transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP1709" FT /db_xref="GOA:Q7W662" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7W662" FT /protein_id="CAE38352.1" FT /translation="MSSSTRVTGARKHLAGVLGVLFILALWQAAAWVLPDFVMPGVPTV FT AQRLVEDLGQASFHQSLLGTLGRLGAGYGLALAAGIGFGLVAAVLFFFREVLRSAIVIL FT QSIPSIAWVPLFLIVMGFGNTPIIVVVALSAFFPAALSVMNATESVQRVHVSAARVMGA FT TRWGLVKRVYLPAVMPELITGAQLAFGNAWRALISAEMLIGFGKGLGRSLAYSGEIADM FT TGVMTNILVIAVLAALIDQFVLENLKHRLLRYQYV" FT misc_feature complement(join(171457..171522,171622..171687, FT 171751..171807,171823..171888,171910..171975, FT 172084..172149)) FT /note="6 probable transmembrane helices predicted for FT BPP3065 by TMHMM2.0 at aa 13-35, 71-93, 100-122, 127-146, FT 167-189 and 222-244" FT misc_feature complement(171517..171753) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 2.3e-10" FT misc_feature complement(172096..172188) FT /note="Signal peptide predicted for BPP3065 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.960) with cleavage site FT probability 0.553 between residues 31 and 32" FT CDS complement(172185..173183) FT /transl_table=11 FT /locus_tag="BPP3066" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1708" FT /db_xref="InterPro:IPR015168" FT /db_xref="UniProtKB/TrEMBL:Q7W661" FT /protein_id="CAE38353.1" FT /translation="MKLKQWLSLPLAAALLAAAPAMAAEKFRVGYLRVMDDAQAIVAQE FT GGYYKKAGLDSELIEFKSGTDLIKAIVGGQLDIGVLGFTNAVAWASKGADLKVVGGAQQ FT GYHSLLVRDDSGIKDIAGLKGKTLASQAEGSTADVVLKGVVLKEGKLGADDVNVMGVSP FT AVAVQSLVGKRVDAAFLFEPYDRIAQLVAPVKQIYEVGQAWPFPCMVVITSGDVLAKRK FT DDVWKALDAQKEAIELLQNKPAGASRLIASYFIAEPTLKTLTRGELPRETVISEAISTQ FT VFTPKLTDKDTNRMQEIADILQAQGSLKTRDGKPYDVSSIVDLSWQEARKL" FT misc_feature complement(173112..173162) FT /note="1 probable transmembrane helix predicted for BPP3066 FT by TMHMM2.0 at aa 7-24" FT misc_feature complement(173115..173183) FT /note="Signal peptide predicted for BPP3066 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 23 and 24" FT CDS complement(173268..174071) FT /transl_table=11 FT /locus_tag="BPP3067" FT /product="putative ABC-transport protein, ATP-binding FT component" FT /note="ortholog of Bordetella pertussis (BX470248) BP1707" FT /db_xref="GOA:Q7W660" FT /db_xref="HSSP:1G29" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W660" FT /protein_id="CAE38354.1" FT /translation="MAPRRPSKPMNLTFDHVHKSFGSLNVVDGFSSEFKTGELVALVGP FT SGCGKSTLLHLAAGLEQASQGRVLADGKPVQGPHPSRTLVFQEHALYPWLTLRDNVALA FT LEFQNAPKAQARQQAVHWLERVGLGGFDAYYPHQVSGGMRQRAALARAFIAQPQTLLMD FT EPFGALDALTRLSLQDVLRQLIEQEKPSVVLVTHDVDEALFLADRIVVFSQRPARVLRE FT FNLAHRARSHDLSDLASEKREILRLLGIEVDSHGHGHGPKVALAA" FT misc_feature complement(173427..173963) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 2.4e-52" FT misc_feature complement(173613..173657) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(173919..173942) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(174199..175866) FT /transl_table=11 FT /locus_tag="BPP3068" FT /product="probable ATP-binding ABC transporter protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1706" FT /db_xref="GOA:Q7W659" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W659" FT /protein_id="CAE38355.1" FT /translation="MVHYRVYLHCALAARQARTYTVISTANLTIQFGPKPLFENVSVKF FT GEGNRYGLIGANGSGKSTFMKIIGGDLEPSAGNVSLEPGVRLGKLRQDQFAFEEVRVLD FT VVMMGHTEMWAAMSERDAIYANPEATEDDYMRAADLEAKFAEYDGYTAEARAGELLLGL FT EIAVDQHNLLMREIAPGWKLRVLLAQVLFSNPDVLLLDEPTNNLDINTIRWLENVLNGY FT QSTMIIISHDRHFLNQVCTHMADVDYGEIRVYPGNYDDYMLASTQARERLTANNAKAKE FT RIVELQDFVRRFAANKSKSRQATSRLKQIDRIKADQVEVKPSSRQNPYIRFEQNKVMHR FT LAVTIEKLSKSYDQPVIRDFSAMVDAGEKVAIIGANGVGKTTLLRMLATDLAPDSGTVK FT WSENADIGYMAQDVSDQFQQGDINLFDWMAEHRQPGDDDQSIRSALGRLLFSGDDLPKA FT PKVLSGGEKNRMTFGRLMLGRHNVMLLDEPTNHLDMESIESLQFALEKYEGTLIFVSHD FT REFVSGLATRIIEILPDGELVDYRGGYEDYLASRGIEA" FT misc_feature complement(174265..174768) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.4e-35" FT misc_feature complement(174439..174483) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(174724..174747) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(175120..175725) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 4.3e-36" FT misc_feature complement(175681..175704) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 176183..177307 FT /transl_table=11 FT /locus_tag="BPP3069" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1705" FT /db_xref="GOA:Q7W658" FT /db_xref="InterPro:IPR006311" FT /db_xref="UniProtKB/TrEMBL:Q7W658" FT /protein_id="CAE38356.1" FT /translation="MQHVTQSRRKFISGAGAVAGTAVLGFPAVTRAQGSPVSLRFQSTW FT PANDIFHEFAQDYARKVNDMAEGQLKIEVLPAGAVVKAFDLLDAVSAGTLDGGHGVVAY FT WYGKNTAVALWGSGPSFGMDANMLLAWHEYGGGKELLTEIQKAMGVNVTSLMYGPMPTQ FT PFGWFKKPITKADDVKGAKFRTVGLAIDMYSAMGAAVNALPGGEIVPALDRGLLDGAEF FT NNASSDLALGFQDVSKICMLQSFHQSAEQFEILFNKNKYDALPKHLKHILAYAAQAASA FT DMSWKAADRYSKDYIKLQKDHNVKFYKTPDAILQQQLKIWDEMIAKRSAENPLFKKVLD FT SQRQFAERAGRWSNDTNVNFRMAFNHYFARKQPA" FT misc_feature 176183..176278 FT /note="Signal peptide predicted for BPP3069 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.996) with cleavage site FT probability 0.769 between residues 32 and 33" FT misc_feature 176216..176284 FT /note="1 probable transmembrane helix predicted for BPP3069 FT by TMHMM2.0 at aa 12-34" FT misc_feature 176303..177166 FT /note="HMMPfam hit to PF03480, Bacterial extracellular FT solute-binding protein, family 7, score 1.6e-19" FT CDS 177434..178057 FT /transl_table=11 FT /locus_tag="BPP3070" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1704" FT /db_xref="InterPro:IPR007387" FT /db_xref="UniProtKB/TrEMBL:Q7W657" FT /protein_id="CAE38357.1" FT /translation="MLRLIRLVDRLSTFVGQAFAWLIVVLTLHICWEVSARYILNTPSA FT WAFDLQLMYYGILFMMAGAYTLAKNGHVRGDILYGFLPPRVQAGLDLLLYILFFIPGVV FT AMVWAGWYYAGESIAIREHSSLMANGPPIYPFKAFIPIAGAFLLLQGLAEIARCLLCLR FT KGQWPSRAEDVEEVDVDKLKEMVHVKDEDIAELDQYVEKGEQTR" FT misc_feature join(177470..177529,177587..177646,177707..177775, FT 177845..177913) FT /note="4 probable transmembrane helices predicted for FT BPP3070 by TMHMM2.0 at aa 13-32, 52-71, 92-114 and 138-160" FT CDS 178054..179964 FT /transl_table=11 FT /locus_tag="BPP3071" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1703" FT /db_xref="InterPro:IPR010656" FT /db_xref="UniProtKB/TrEMBL:Q7W656" FT /protein_id="CAE38358.1" FT /translation="MKIHKALWFGLSCIGLVLLMIAFLTPWDHLTTGHIGLLMLALIVV FT AIMLGFPTAFTLMGMGVLFTFLAYFMQHEDGARAVRQTLDLMVQRTYATMTNDSLISVP FT LFVFMGYLVERANLIERLFRSMHLALARLPGALGVATLITCAIFATATGIVGAVVTLMG FT LLAMPAMLKAGYSVRLTAGSITAGGCLGILIPPSVMLIVYGATTGVSVVQLYAGAFFPG FT IMLAGLYVLYVMIVAKLRPDMAPPLSKEERHIPLQPGAEALRRQGYRHAVPGLLAGLFK FT RRDPQITGSFLARNLMLVAAPLAAFVLITGATYSTVTEPPVVYEIPDELRLGSGDSFDS FT GLAEPPSEDGGLAEPPGAAAAPEAAAAQAEAAEAAEDAEDATAERLPAPYGFWVFFAVC FT VALLAVFYALLNWTRLEVVRLLMSSFFPLALMIVAVLGSIVFGLATPSEAAAMGALGGA FT LLALAYRRLTMPVLRESVYLTAKTSAMVCWLFVGSSIFSAAFALLGGQGLVEQWVLSLG FT LTPIQFMLLAQIIIFLLGWPLEWTEIIVIFMPIFVPLLKAFGIDPLFFGLLVALNLQTA FT FLSPPVAMSAFYLKGVAPPHVTLNQIFLGMIPFMGIQLLAIFLLYMFPGIGLWLPTVLY FT R" FT misc_feature 178054..178125 FT /note="Signal peptide predicted for BPP3071 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.848) with cleavage site FT probability 0.477 between residues 24 and 25" FT misc_feature join(178072..178125,178168..178263,178324..178392, FT 178450..178551,178588..178656,178684..178752, FT 178924..178992,179224..179292,179311..179379, FT 179392..179445,179506..179565,179593..179661, FT 179680..179748,179878..179946) FT /note="14 probable transmembrane helices predicted for FT BPP3071 by TMHMM2.0 at aa 7-24, 39-70, 91-113, 133-166, FT 179-201, 211-233, 291-313, 391-413, 420-442, 447-464, FT 485-504, 514-536, 543-565 and 609-631" FT CDS 180013..180807 FT /transl_table=11 FT /locus_tag="BPP3072" FT /product="probable enoyl-CoA hydratase/isomerase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1702" FT /db_xref="GOA:Q7W655" FT /db_xref="HSSP:1HZD" FT /db_xref="InterPro:IPR001753" FT /db_xref="UniProtKB/TrEMBL:Q7W655" FT /protein_id="CAE38359.1" FT /translation="MLQTLEVAYGPQTAVVWLNRPDVRNALDPRMIAELTETFMALGAD FT NEVRAIVLAGRGKAFCAGADLNWMRRSAQAGDAENRADAQTLATMLHTIYTCPKPTIAR FT IHGPCMAGGMGLAAACDIAVASHEARFALTETRLGLIASVISPYVLRAMGARTASRWFL FT SAEAFEATEAWRIGLVHELCEADRLDGQINELLGSFMLTSPHAVAQAKRLIRDVAGAPI FT DAALLEETAARIAEQRASADGREGLASFLEKRQPAWVPQQDQ" FT misc_feature 180052..180564 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family, score 8.3e-46" FT CDS complement(180820..181821) FT /transl_table=11 FT /gene="ldcA" FT /locus_tag="BPP3073" FT /product="muramoyltetrapeptide carboxypeptidase" FT /EC_number="3.4.17.13" FT /note="ortholog of Bordetella pertussis (BX470248) BP1701" FT /db_xref="GOA:Q7W654" FT /db_xref="InterPro:IPR003507" FT /db_xref="UniProtKB/TrEMBL:Q7W654" FT /protein_id="CAE38360.1" FT /translation="MTKKKNPPASHGHDHHEHHGHEPGHVCDAGCVHAPAQASGIYLVS FT PSSAVRDAAELELACQRLAAEGFQAKVDRAALAVHQRFAGTDKQRAAGLQRAIKQKHPI FT VMATRGGYGLIRLLPMIDWRAMADSGKRFVGMSDFTAFNLALLAQTGAVSYSGATAVRD FT FGLAKTDELTVALFGEIMRGELEILSFETRDADAFDGRGVLWGGNLATLVSLLGTPYMP FT KVRGGILFLEDVAEHPYRVERMLAQLWQAGVLERQKAIVLGSFSDYRLAAHDNGYDMHA FT VVGWLRKTVKVPVVTGLPYGHTDTKATLPIGKKVGLATERGMAHLVIDEHTH" FT misc_feature complement(180841..181503) FT /note="HMMPfam hit to PF02016, Uncharacterized protein FT family UPF0094, score 4.9e-59" FT CDS complement(181818..182324) FT /transl_table=11 FT /gene="cumB" FT /locus_tag="BPP3074" FT /product="putative zinc-binding hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1700" FT /db_xref="GOA:Q7W653" FT /db_xref="HSSP:1P6O" FT /db_xref="InterPro:IPR002125" FT /db_xref="UniProtKB/TrEMBL:Q7W653" FT /protein_id="CAE38361.1" FT /translation="MADALVSETDPCVADDARLMALALEQAQEAARLGEVPVGAVVVDA FT QGEVLGAGYNRTIIDRDPTAHAEIVALRAAARRLDNYRLPGVSLYVTLEPCVMCIGAML FT HARLARVVYGARDPKTGACGSVLDVGAVGQLNHHTTITGGVLAEPCGELLRGFFRARRA FT KESPV" FT misc_feature complement(181980..182288) FT /note="HMMPfam hit to PF00383, Cytidine and deoxycytidylate FT deaminase zinc-binding region, score 1.1e-35" FT misc_feature complement(182016..182129) FT /note="PS00903 Cytidine and deoxycytidylate deaminases FT zinc-binding region signature." FT CDS complement(182317..183165) FT /transl_table=11 FT /locus_tag="BPP3075" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1699" FT /db_xref="UniProtKB/TrEMBL:Q7W652" FT /protein_id="CAE38362.1" FT /translation="MSDVIALVFDFDDTLASDSTTGFLESIGVDTASFWKDQVDPLLSQ FT QDWDPVPAYLYQMIQLSRQGSHGLITRERLREWGARLALHDGVQTLFGRLRAAVRAEHP FT KVQLEFYLISSGIGDVVRATPIAHEFTETWASEFVYGEDGGISFPRRIVSFTDKTRYLF FT HIQKGLIGREYRNKPFEVNRKVPEDRLRVPFDQMVFVGDGYTDIPCFSLIRSAGGFAFG FT VWDPKHRDKRSRAWGFIEEGRVSNLNQARYDEQAELYQWLEEAVTSLAGRIALKSRVYR FT G" FT CDS complement(183263..183817) FT /transl_table=11 FT /locus_tag="BPP3076" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1698" FT /db_xref="UniProtKB/TrEMBL:Q7W651" FT /protein_id="CAE38363.1" FT /translation="MTAAAYFKERNMSKIRIQRWCGALALGAGSLMAFGAHAAGTGSGQ FT SQYQMDVQRCNSGDTSQDRATCLREAGAARQESQRNRLDDKQEGRYQDNAMMRCKNLPA FT SQQQDCITQMTSGNTTTRGSVGGGGVLRETVIQVPAGTPGSTPGTPMPGGQMPSGQMPG FT AAPGGLQPPPAGTVAPPPVMR" FT misc_feature complement(183704..183817) FT /note="Signal peptide predicted for BPP3076 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 38 and 39" FT CDS complement(183918..184244) FT /transl_table=11 FT /gene="phaG" FT /locus_tag="BPP3077" FT /product="putative pH adaptation potassium efflux protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1696" FT /db_xref="GOA:Q7W650" FT /db_xref="InterPro:IPR005133" FT /db_xref="UniProtKB/TrEMBL:Q7W650" FT /protein_id="CAE38364.1" FT /translation="MIDVDIPLWAGIPAAILLVLGGLLTLTGALGMLRFGHFYARIHAP FT TLGNTMGACSVLTASILVFSSLSMRPVVHEFVIGMLLVLTSPVTGMLLMRAAVYRARRA FT DDSA" FT misc_feature complement(183924..184244) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03334, Na+/H+ antiporter subunit, FT score 9.5e-11" FT misc_feature complement(join(183948..184013,184044..184109, FT 184149..184214)) FT /note="3 probable transmembrane helices predicted for FT BPP3077 by TMHMM2.0 at aa 10-32, 45-67 and 77-99" FT CDS complement(184241..184525) FT /transl_table=11 FT /gene="phaF" FT /gene_synonym="phaF1" FT /locus_tag="BPP3078" FT /product="pH adaptation potassium efflux system protein F" FT /note="ortholog of Bordetella pertussis (BX470248) BP1695" FT /db_xref="GOA:Q7W649" FT /db_xref="InterPro:IPR007208" FT /db_xref="UniProtKB/TrEMBL:Q7W649" FT /protein_id="CAE38365.1" FT /translation="MMNIVLYWSASFALLCFALAMACAAIRLLRGPTAQDRVLALDSLY FT VSGMLTMLVFGIRAGTPVYFDIALLIALFGFVGSTAMAKFLLRGEVIEP" FT misc_feature complement(join(184265..184330,184346..184411, FT 184448..184513)) FT /note="3 probable transmembrane helices predicted for FT BPP3078 by TMHMM2.0 at aa 4-26, 38-60 and 65-87" FT misc_feature complement(184460..184525) FT /note="Signal peptide predicted for BPP3078 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.746 between residues 22 and 23" FT CDS complement(184522..185001) FT /transl_table=11 FT /gene="phaE" FT /locus_tag="BPP3079" FT /product="putative pH adaptation potassium efflux protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1694" FT /db_xref="GOA:Q7W648" FT /db_xref="InterPro:IPR002758" FT /db_xref="UniProtKB/TrEMBL:Q7W648" FT /protein_id="CAE38366.1" FT /translation="MMRRYYLALLPLAMLALWLMLNQSASVGQLALGAALALWLGWASS FT RLRPLRGKPRRLWLLPGLAARVFADIVRSNVAVARLVWQRRPDFSPGFIAIPLDLHDPH FT GLAILACIVTYTPGTVWVDIIDGKLVLHVLDLQNEEAWIALVKQRYERTLIEVFE" FT misc_feature complement(184528..184839) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01899, Protein of unknown function FT DUF68, score 0.00015" FT misc_feature complement(join(184873..184923,184936..184986)) FT /note="2 probable transmembrane helices predicted for FT BPP3079 by TMHMM2.0 at aa 5-22 and 26-43" FT misc_feature complement(184927..185001) FT /note="Signal peptide predicted for BPP3079 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.389 between residues 25 and 26" FT CDS complement(184998..186626) FT /transl_table=11 FT /gene="phaD" FT /locus_tag="BPP3080" FT /product="putative pH adaptation potassium efflux protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1693" FT /db_xref="GOA:Q7W647" FT /db_xref="InterPro:IPR001750" FT /db_xref="UniProtKB/TrEMBL:Q7W647" FT /protein_id="CAE38367.1" FT /translation="MIDWLQHLPIYPITVPLIAGALMLLLPDTQRKTRAGIGLLSSLLQ FT LVSAIALLSLAAGAGGLWPDGIGVYLPGDWPAPFGIVLVVDRLAAVMLALTAVLGLAAL FT IYSLARWDRAGVHFHSLYQFLLMGLNGAFLTGDLFNLFVFFEVLLAASYGLMLHGSGIA FT RVTAGLQYIAVNLVASFLLLISIALIYGVTGTLNLADLALRAGTLTGGERSLFEAGAAI FT LGVAFLVKAGAWPLNFWLVKGYGSAAAPVAALFSIMTKVGIYALLRIGSLLLPTGAPAA FT FSLDWMFAAGLATLVFGGLGLLANQQLEKLTGYCVIVSAGTLLTALGMPGVTLTGPALF FT YLISSVLATGALFMLVELIERTRSFGANVLAVTMDLFDLDDPSTPNRSDDVVGVAIPAA FT MAFLGLAFVSCALLVTGLPPLSGFVAKFSLLSAAVTAANTPSVALDAWVLVALVLLSGL FT AGLIALGRVGIRIFWSSDDRVTPRLRLMEAGPVAVLLLLCVVLAAGAGPVSAYLDAAAQ FT SLDRPATYVNAVLAKQPARALSEGL" FT misc_feature complement(join(185091..185156,185220..185285, FT 185382..185447,185550..185615,185628..185693, FT 185715..185780,185826..185891,185907..185972, FT 186033..186098,186138..186203,186219..186284, FT 186300..186365,186444..186509,186549..186614)) FT /note="14 probable transmembrane helices predicted for FT BPP3080 by TMHMM2.0 at aa 4-26, 39-61, 87-109, 114-136, FT 141-163, 176-198, 218-240, 245-267, 282-304, 311-333, FT 337-359, 393-415, 447-469 and 490-512" FT misc_feature complement(185247..186224) FT /note="HMMPfam hit to PF00361, FT NADH-Ubiquinone/plastoquinone (complex I), various chains, FT score 2.1e-15" FT CDS complement(186623..186967) FT /transl_table=11 FT /gene="phaC" FT /locus_tag="BPP3081" FT /product="putative pH adaptation potassium efflux protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1692" FT /db_xref="GOA:Q7W646" FT /db_xref="InterPro:IPR001133" FT /db_xref="UniProtKB/TrEMBL:Q7W646" FT /protein_id="CAE38368.1" FT /translation="MEVVYALAIGVLAGSGVWLLLRPRTFQVIMGLSLLSYAVNLFIFG FT MGRLTVGRPPVVSASAPVDAAAYADPLPQALVLTAIVIGFATTALFLVVLLASRGLTGT FT DHVDGREPES" FT misc_feature complement(186632..186967) FT /note="HMMPfam hit to PF01898, Protein of unknown function FT DUF67, score 1e-42" FT misc_feature complement(join(186677..186742,186818..186883, FT 186905..186955)) FT /note="3 probable transmembrane helices predicted for FT BPP3081 by TMHMM2.0 at aa 4-21, 28-50 and 75-97" FT CDS complement(186967..189900) FT /transl_table=11 FT /gene="phaA" FT /locus_tag="BPP3082" FT /product="putative pH adaptation potassium efflux protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1691" FT /db_xref="GOA:Q7W645" FT /db_xref="InterPro:IPR003916" FT /db_xref="UniProtKB/TrEMBL:Q7W645" FT /protein_id="CAE38369.1" FT /translation="MSLLLVLALPFLGSLCAALLPANARNAEAWLAGLIALACTLLVAS FT LYPQIAAGGVIRADLSWAPALGLQFTLRMDGYAWLFALIISGMGALVVLYARYYMSPED FT PVPRFFSFFQAFMAAMLGVVMSGNLIQLVMFWEMTSLASFMLIAYWHHRLDARRGARMA FT LTVTGAGGLSLLAGVLMLGHIVGSYDMDQVLAAGDIVRADPWYPAVLVLIALGALTKSA FT QFPFQFWLPNAMAAPTPVSAYLHSATMVKAGVFLLARFWPVLAGTDEWFWIIGGAGLCS FT LVLGAYAAIFQQDMKGVLAYSTISHLGLITLMLGLNSSLGLVAAIFHMVNHATFKASLF FT MAAGIVDHETGTRDVGRLSGLYGAMPITATLAMVAAASMAGVPLLNGFISKEMFFAETT FT FVSGDVLVRWGLPLMATLAGAFSVTYSLRFILQVFFGPPAEDLPRAPHEPPRWMLLPSA FT LLVMVCLVVGVLPGVTLGPILHLAASSILGEHMPQYSLSVWHGFNLPLAMSFVALTAGV FT LLYLALRARQRAHPGLVPFIYRFDGRRTFEYLLDASSVAAAWLLRYLASSRMQVQMLVI FT VLGTLWVAWLPLRAGGWLSGQARLTPADPAFAILWVVGAACALGAAYQAKYHRLASLTL FT SGGAGLITCLTFVWFSAPDLALTQLAVEVVTVVLLLLGLRWLPRRIQTGGDEERPDLRA FT RVRRLRDLGLAGVAGACMAALAYAVLTRPVGDTISSFFTERALPDGGGTNVVNVILVDF FT RGFDTLGEITVLGIVALTVYALLRRFRPAPESVELPHQQREQDGMPTVDETGERPAPDT FT KSPLPAGPMMIPAVLVRLLLPVAVLVSVYLLLRGHNLPGGGFVGGLVMATAIILQYMVG FT GVYWVESRSRFNPQHWVGLGLLAAGGAAVSAWLALRPFLSALAWDVALPVVGHVHLSSV FT LLFDLGVYMLVVGATVLVLVALAHQSLRAQRQAAVEAQAVAQTGSPA" FT misc_feature complement(join(187045..187110,187171..187236, FT 187273..187338,187369..187425,187573..187623, FT 187738..187803,187867..187932,187945..188010, FT 188032..188082,188113..188178,188332..188397, FT 188458..188523,188734..188799,188923..188988, FT 189028..189093,189106..189171,189211..189276, FT 189346..189411,189493..189558,189604..189669, FT 189733..189798,189829..189894)) FT /note="22 probable transmembrane helices predicted for FT BPP3082 by TMHMM2.0 at aa 2-24, 34-56, 77-99, 114-136, FT 163-185, 208-230, 243-265, 269-291, 304-326, 367-389, FT 459-481, 501-523, 574-596, 606-623, 630-652, 656-678, FT 699-721, 759-776, 825-844, 854-876, 888-910 and 930-952" FT misc_feature complement(188632..189525) FT /note="HMMPfam hit to PF00361, FT NADH-Ubiquinone/plastoquinone (complex I), various chains, FT score 7.8e-70" FT misc_feature complement(189829..189900) FT /note="Signal peptide predicted for BPP3082 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.409 between residues 24 and 25" FT CDS 190323..191309 FT /transl_table=11 FT /locus_tag="BPP3083" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) FT BP1690+BP2631" FT /db_xref="GOA:Q7W644" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7W644" FT /protein_id="CAE38370.1" FT /translation="MRKPASIKILLGALVAGACVTGAAAQAQPYPNHAVRLIVPFAAGG FT TTDIVARIVAEGLGRELGQPVVVENRGGGGGGAIGADALAKATPDGYTLGVATVSTMAT FT NPATNPQTPYDPLKDFTPITNLVSVPNVMTVNPKIAAQTLKEFIALVKANPDKYSYASS FT GTGSISHLDGELFKSLTGTDMVHVPYRGSGPALNDTIAGQVNAQFDNLPSSIPHIQAGK FT LRALAVAAPKRVSALPDVPTFGEAGYPAMDNMAWYGLVAPAGVPPEVVKRVHDAAVKAL FT QDPKIRKRLEDGGSIVEGSTPTEYASLIKRELELRKRIATEQKIQLN" FT misc_feature 190323..190403 FT /note="Signal peptide predicted for BPP3083 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.910 between residues 38 and 39" FT misc_feature 190347..190379 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 190470..191297 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.2e-110" FT CDS complement(191357..193993) FT /transl_table=11 FT /locus_tag="BPP3084" FT /product="putative GTP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2632" FT /db_xref="UniProtKB/TrEMBL:Q7W643" FT /protein_id="CAE38371.1" FT /translation="MKLRRIALEAFRKFRQPVALEDLDGGLNIIVGPNEAGKSTFVAAL FT RAAFLERYATNKPLADLAPWDMPDARPSVTVDFTHDGHAYSLRKQFLHRARCELLIDGG FT AQRHEGEEAENLLARLLGYEFAGRGLSRPEHAGVPGLLWIQQGEGQTLLAPAGHAGMHV FT RAALTEVSGELAATDGDRLFERVAAERAALLDARGGRPKGAYKEAEEAWARAREQCETL FT AAAKRQVDDDVDRLARLRAEYERAQREQPWQAMAERAAQARQRLEGIARERQALEQLQR FT ELAQAGETLALLAEQVGRDQHDAEALAQLRNDAQAAQQAMEPARAALERVQAGQGELAA FT QVAHWRERLAGAQAGAERGDLAEQLARLQADAQRQQQALQQAAELAAAVAGHQAQLAES FT AIDADTVARLREQERLLNELRAQQRAMATRLHHRLLPGKQVELDGVALAGDAQVLITSA FT ARVRIDGVGELEILPGGRDLPALLDELRARGAERDALLGKLGVPDLAGAEARLAASEQA FT RRDLDMARKALRIHAPDGVPALQAEQAATARRRDQQQARLQALPPAAAGDMPPLAEIQQ FT ALRAAEQAAEHGARATVAARTELDAQAARAQLLQAQWQARQQDYAGEQRSAQRAQRGLR FT LVEARALRDSLARRAKEAGAALAAHQPELVEQDLQRYERSAALEREAQHRRHGELLQLQ FT GRLEQAGAQGLGEQLLLAEADLQRLARRRAEYMERAEALDLLWRLLDEHRTAATQRLLE FT PLARRLQHYLALLFPGAQWRLDETLMPVALRRDGLEDGLEALSFGTREQLGVLARLAYA FT DLLAQAGRPALLVLDDALVHADDARRDLIKRALFDAASRHQVLLFTCHAEAWRDMGVPL FT RELPSGG" FT misc_feature complement(193877..193900) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(193990..195111) FT /transl_table=11 FT /locus_tag="BPP3085" FT /product="possible exonuclease" FT /note="ortholog of Bordetella pertussis (BX470248) BP2633" FT /db_xref="GOA:Q7W642" FT /db_xref="InterPro:IPR014577" FT /db_xref="UniProtKB/TrEMBL:Q7W642" FT /protein_id="CAE38372.1" FT /translation="MTRFIHTADWQIGRQYGQFDSDDAAVLAEARLEAVARIAAQASEL FT AVDAVLVAGDVFDTQSVSDRTIRRLFGAMQAYEGPWVLIAGNHDAALADSVWSRARRLE FT CIGTNVHVPQGTAAVELPQAGLAVLAAPLTQRHTYDDVTAAFDTMDSAAGLVRVGLAHG FT SVADRLPEQADAANPIAPDRAQRARLDYLALGDWHGCLRIDERTWYAGTPEPDRFRGNT FT PGYALLVEVASPGAPPQVRQLEVGKYRWSHWVERLDLASDAEDLGHRLAGLQAGDVLRL FT ELHGALSLARWDALRRDVERAAARVRALVADSAGLVLEPDAADLAALSVDGYVGAAAAR FT LQAMQGDGAQASAARVALRLLLQYQRELAEGAS" FT misc_feature complement(194512..195108) FT /note="HMMPfam hit to PF00149, Calcineurin-like FT phosphoesterase, score 2.1e-13" FT CDS complement(195188..196492) FT /transl_table=11 FT /gene="dadA" FT /gene_synonym="dadR" FT /locus_tag="BPP3086" FT /product="D-amino acid dehydrogenase small subunit" FT /EC_number="1.4.99.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP2634" FT /db_xref="GOA:Q7W641" FT /db_xref="InterPro:IPR006076" FT /db_xref="UniProtKB/Swiss-Prot:Q7W641" FT /protein_id="CAE38373.1" FT /translation="MHVIVLGSGVIGTTTAYYLARQGAQVTVLERRAGPADETSYGNAG FT QVSPGYSTPWAAPGIPLKALKWMFQKHAPLAIRADGSFYQWRWLAAMLANCSAGRYSVN FT KERMLRLAEYSRDCLRTLRADTGIQYEQRTQGTLQLFRTAAQMEAARRDIAVLEECGVP FT YELLDRNRLPTAEPALARALDKLAGGLRLPNDETGDCRRFTLQLADKAKALGVQFRFNQ FT QVEGLDVRGGQVAGVRVGGEQLAADCYVAAFGSYTRGFLRPLGLDLPVYPVKGYSLTIP FT MTDESAAPVSTILDETYKVAVTRFDQRIRVGGMAELAGFDLRLKEARRKTLELVVNDLS FT PGSGAVEQAEFWTGLRPMTPDSTPIIGATKYGNLFLNTGHGTLGWTMACGSGQLVADQV FT CGRQPAIRADDLALSRYGAGGQAGGGVARAQHNAA" FT misc_feature complement(195293..196492) FT /note="HMMPfam hit to PF01266, FAD dependent FT oxidoreductase, score 0.00083" FT CDS 196628..197095 FT /transl_table=11 FT /gene="lrp" FT /locus_tag="BPP3087" FT /product="leucine-responsive regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2635" FT /db_xref="GOA:Q7W640" FT /db_xref="InterPro:IPR019888" FT /db_xref="UniProtKB/TrEMBL:Q7W640" FT /protein_id="CAE38374.1" FT /translation="MRELDRIDRKILDILQREGRISITELAEKISLSATPCSERVRRLE FT REGVITGYHARINPAALGKTLLVFLEIRLSAKSGDVFDKVKQELLYVPEVMECHLVSGD FT FDYLVKARLSEMNEYRRLLGEILKRLPASAESHSYVVMEEIKETLYLPVDR" FT misc_feature 196709..197020 FT /note="HMMPfam hit to PF01037, AsnC family, score 8.3e-44" FT CDS 197167..197880 FT /transl_table=11 FT /locus_tag="BPP3088" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2636" FT /db_xref="InterPro:IPR007462" FT /db_xref="UniProtKB/TrEMBL:Q7W639" FT /protein_id="CAE38375.1" FT /translation="MPAVRARRRGAGASSMSRLYRYFFRGLITVLPIALTLYLLFIFLA FT WTEALALTLLRPFIGSFYIPGMGLALGILGILAIGYLVSKQRVQRWLLLLEMPFTNLPV FT VKSIYSSLKSFADYFSPSAKTSSQQVVILRMPGNPLELVGLVTRRTLEGLPDGFTQGDR FT VAVYLPMGYMIGGYTVFVPTEWVHPIQMSVEEAMRSSLIAWMARAENGAASGTVAAPPA FT PPAPPAPPAAGGPQA" FT misc_feature join(197236..197304,197347..197415) FT /note="2 probable transmembrane helices predicted for FT BPP3088 by TMHMM2.0 at aa 24-46 and 61-83" FT CDS 198009..199154 FT /transl_table=11 FT /locus_tag="BPP3089" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2637" FT /db_xref="UniProtKB/TrEMBL:Q7W638" FT /protein_id="CAE38376.1" FT /translation="MSTAAPVPGGILIACAAAAADASQQALLQYVQGLGLADAVTLSCI FT RRGETAALSMTLAPAFQARHAPGHDTTGIAASLGLRPEHDSGDLEREILLAILASPVAF FT PLPDAAELASAVRIRRHIVQAARRTALAFDTEQAERPQDDWVYDEQRGFTVLPGRPLVE FT ALRKATQPDESGRLYSFSCYRATEYVTVLGIAQELQACNPELAARLQRQWETRAVMSGL FT FHDTFLREYGSLQDPLPPRYYVPGDRLWFRNPDEHSSNVEGYEGSWVFYLGSGLFNNFW FT KRDQPYTLAGKCVEIYHWRHGARRNEAGKLIIDESIVEARVHATMADPQATARVLERMV FT RIRDPQGIYAEGGCIDATRECARWVGPGHTDIVLPDFPRPA" FT misc_feature 198009..198065 FT /note="Signal peptide predicted for BPP3089 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.700 between residues 19 and 20" FT misc_feature 198021..198053 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(199156..200886) FT /transl_table=11 FT /locus_tag="BPP3090" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2638" FT /db_xref="GOA:Q7W637" FT /db_xref="InterPro:IPR014597" FT /db_xref="UniProtKB/TrEMBL:Q7W637" FT /protein_id="CAE38377.1" FT /translation="MKMRMHAMAAAIALIGTQAAWAGEPEARKWVDSEFQPSSLSKDQQ FT MAEMKWFIDAAEKLKAKGVSEINVVSETITTHEYEAKTLARAFTEITGIKVNHDLIQEG FT DVVEKLQTSMQSGKSIYDGWISDSDLIGTHYRYGAILPLSDYISGAGKEYTNPGLDLKD FT FIGTKFTTAPDGKLYQLPDQQFANVYWFRADWFARKDLQDKFKAKYGYELGVPTNWSAY FT EDIAEFFSNDVKELDGKRVYGHMDYGKKDPSLGWRFTDAWLSMAGAADKGLPNGMPVDE FT WGIRVADDKCTPVGASVARGGATNSPAAVYALTKYVDWMKKYAPQQATGMTFSESGPVP FT AQGQIAQQIFWYTAFTADMTKKGLPVVNEDGTPKWRMAPSPYGPYWKDGMQNGYQDVGS FT WTFFKSTDANRLAGAWLYAQFVTSKTVSLKKSITGLTFIRDSDINSEFFTKNAANYGGL FT VEFYRSPARVAWTPTGNNVPDYPKLAQLWWKNVATAVTGEKTPQQAMDTLANEMDQVLA FT RLERAGMAQCAPKLNPKSDPAKWLSDQHAPWKKLANEKPQGQTIAYEKLLQAWKEGKVR FT " FT misc_feature complement(199369..200670) FT /note="HMMPfam hit to PF01547, Bacterial extracellular FT solute-binding protein, score 0.002" FT misc_feature complement(199633..199668) FT /note="PS00213 Lipocalin signature." FT misc_feature complement(200821..200886) FT /note="Signal peptide predicted for BPP3090 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 22 and 23" FT CDS complement(201004..201312) FT /transl_table=11 FT /locus_tag="BPP3091" FT /product="putative integral membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2639" FT /db_xref="InterPro:IPR018678" FT /db_xref="UniProtKB/TrEMBL:Q7W636" FT /protein_id="CAE38378.1" FT /translation="MFGWMVWTTPVAVFFACIALMLAGMTIWELRSPTRLRKGFLPIAT FT TRGDRLFIGLMIAAWINLAYVGLGSKAMEWFALDQPPTVWIGFVLSMVVLALVMRKG" FT misc_feature complement(join(201013..201063,201109..201159, FT 201229..201294)) FT /note="3 probable transmembrane helices predicted for FT BPP3091 by TMHMM2.0 at aa 6-28, 51-68 and 83-100" FT CDS complement(201325..202137) FT /transl_table=11 FT /locus_tag="BPP3092" FT /product="putative ABC transport protein, inner membrane FT component" FT /note="ortholog of Bordetella pertussis (BX470248) BP2640" FT /db_xref="GOA:Q7W635" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7W635" FT /protein_id="CAE38379.1" FT /translation="MAERRSSWRGIFLALYLLFAVLPLYWMVNMSFKTNTEILGSLTLW FT PSDFTVEHYRTIFTDPAWYSGYINSLIYVLINTVISLAVALPAAYAFSRYRFIGDKHVF FT FWLLTNRMTPPAVFLLPFFQLYTSLGLMDTHLAVALAHLVFNVPLAVWILEGFMSGVPR FT EIDETAYVDGYSFPRFFLTIFLPLIKAGVGVAAFFCFMFSWVELLLARTLTSVNAKPIV FT ATMTRTVSASGMDWGVLAAAGVLTIVPGAIVIWFVRHYIAKGFAMGRV" FT misc_feature complement(join(201367..201432,201535..201600, FT 201664..201729,201760..201825,201862..201927, FT 202051..202116)) FT /note="6 probable transmembrane helices predicted for FT BPP3092 by TMHMM2.0 at aa 7-29, 70-92, 104-126, 136-158, FT 179-201 and 235-257" FT misc_feature complement(201460..201669) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 0.012" FT misc_feature complement(201580..201666) FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS complement(202130..203020) FT /transl_table=11 FT /locus_tag="BPP3093" FT /product="putative ABC transport protein, inner membrane FT component" FT /note="ortholog of Bordetella pertussis (BX470248) BP2641" FT /db_xref="GOA:Q7W634" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7W634" FT /protein_id="CAE38380.1" FT /translation="MKPIDHRAWLLVLPVVLCVAFSAILPLMTIVNYSVQDIIAPDRRV FT FVGTEWFAAVLQDEELHGALWRQIGFSLAVLLIEIPLGILLALAMPASGWRASAVLVVI FT ALSLLIPWNVVGTIWQVFGRTDIGLLGAALAALGLDYNYTGDALDAWLTVLVMDVWHWT FT PLVALLCYAGLRAIPDAYYQAARIDGASAFAVFRYIQLPKLRGVLMIAVLLRFMDSFMI FT YTEPFVLTGGGPGNATTFLSQYLTQKAVGQFDLGPAAAFSIVYFLIILLLCFVLYNWMQ FT RAGTAGGLDEESRHG" FT misc_feature complement(join(202190..202255,202334..202399, FT 202505..202570,202655..202720,202757..202822, FT 202928..202993)) FT /note="6 probable transmembrane helices predicted for FT BPP3093 by TMHMM2.0 at aa 9-31, 66-88, 100-122, 150-172, FT 207-229 and 255-277" FT misc_feature complement(202283..202504) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 3.1e-10" FT misc_feature complement(202415..202501) FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT misc_feature complement(202955..203020) FT /note="Signal peptide predicted for BPP3093 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.901) with cleavage site FT probability 0.779 between residues 22 and 23" FT CDS complement(203017..204105) FT /transl_table=11 FT /locus_tag="BPP3094" FT /product="probable ATP-binding ABC transporter protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2642" FT /db_xref="GOA:Q7W633" FT /db_xref="HSSP:1G29" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W633" FT /protein_id="CAE38381.1" FT /translation="MASIELDLAHAYGSDPRGEDDYALLPLRFTFEDGGAYALLGPSGC FT GKTTLLNCVSGLLRPSQGRVLFDGQDVTGRTPQQRNIAQVFQFPVVYDTMTVADNLAFP FT LRNRGVPQAHIRERVGRIAEMLELSAVLERRASGLTADAKQKISLGRGLVRSDVSAILF FT DEPLTVIDPHLKWELRRKLKEIHHEFKLTLIYVTHDQTEALTFAERVMVMSRGRAVQVG FT TPDDLFERPAHTFVGHFIGSPGMNFLPAEWRDGALRIGSQRLEGLTAGQAEALAQGGPV FT KLGVRPEYLRLVAPHTPGALPVRVVRVQDVGTYALLGAEFESNALRARLPLDAALPGAG FT DTVWLAVLNRHTCFYRDEELIR" FT misc_feature complement(203458..204006) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 2.8e-37" FT misc_feature complement(203962..203985) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(204105..205187) FT /transl_table=11 FT /locus_tag="BPP3095" FT /product="probable ATP-binding ABC transporter protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2642A" FT /db_xref="GOA:Q7W632" FT /db_xref="HSSP:1G29" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W632" FT /protein_id="CAE38382.1" FT /translation="MQLVLDGIQLRAGSQVHLYPLSLQPAPGAMTVLLGATLAGKTSVM FT RIMAGLDRPTEGKALVDGADVTGVPVRQRNVAMVYQQFINYPSMRVADNIASPLRLRGA FT ADIPARVRAMAERLHIEHLLERYPSELSGGQQQRVALARALVKDAPLVLLDEPLVNLDY FT KLREALREELAGLFAQGRSTVVYATTEPAEALLLGGHTAVLDAGRLLQYGPTAEVFHRP FT NSIRVARAFSDPPMNLFPARRANGGFMLASGVMVPCALPPPETGDDALTAGLRAGVFRT FT EARAADVALPGVVELAEISGSDSFVHVRTPAGPVVAQLTGVHRYPLDSRLTLHFDPADS FT YAFGPDGALLAAPRRAGEER" FT misc_feature complement(204567..205106) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 3.9e-49" FT misc_feature complement(204753..204797) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(205062..205085) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 205292..206101 FT /transl_table=11 FT /gene="glpR" FT /locus_tag="BPP3096" FT /product="glycerol-3-phosphate regulon repressor protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2643" FT /db_xref="GOA:Q7W631" FT /db_xref="InterPro:IPR018356" FT /db_xref="UniProtKB/TrEMBL:Q7W631" FT /protein_id="CAE38383.1" FT /translation="MLFYDANMTLNPRQSALVELVRTQGSATIEALARHFDVTLQTVRR FT DVNLLSEAGMLSRFHGGVRIESSTIENIAYRKRQGLHAEGKRRIAEAVARAVPDGCSLL FT INIGTTTEAIARALLRHRGLRVITNNLHVADILSDNPDCEVIVAGGVVRSRDRGIVGEA FT TLDFIRQFKVDIGLIGISGIEADGTLRDYDFREVRVARAIIEQSREVWLAADSSKFQRQ FT AMVELAHVSRIHRFFTDAQPQESLAQVLQDAGVRCDVAAQSAGAATA" FT misc_feature 205328..205432 FT /note="PS00894 Bacterial regulatory proteins, deoR family FT signature." FT misc_feature 205328..206008 FT /note="HMMPfam hit to PF00455, Bacterial regulatory FT proteins, deoR family, score 7.2e-81" FT CDS 206141..207745 FT /transl_table=11 FT /locus_tag="BPP3097" FT /product="putative glycerol-3-phosphate dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2644" FT /db_xref="GOA:Q7W630" FT /db_xref="InterPro:IPR000447" FT /db_xref="UniProtKB/TrEMBL:Q7W630" FT /protein_id="CAE38384.1" FT /translation="MTAPTLAPIDPPARAQLLADLQGAPDWDVIVIGGGATGLGTAVDA FT AARGYRTLLVEAADFAKGTSSKATKLVHGGVRYLAQGNISLVREALHERGLLNRNAPHL FT VWPLGFVVPAYSLLDQPFYGVGLKMYDMLAGKLNLAPSRWLSRGETLRHAATVAERVNG FT RALRGGILYYDGQFDDARLAIALMRTLYDLGGVALNYARAVGLTRTDGRVDGVTVADAL FT GELRVTLRAKCVVNATGVWVDAVRRMDDPAAQTMVAPSQGVHLTLPRDFLPGEDAILIP FT KTDDGRVLFVVPWNGHTIVGTTDTPRTDLPLDPQAGQNEIDFILATAARYLSRKPTRAD FT VTSVWAGLRPLVKATGEASTKSLSREHTIVVSKGGLVTVTGGKWTTYRKMAQDVVDTAI FT QHKLLAAAPCRTSELPLHGAPTDGQPSGAPHGTPDSYYGTDLATLRALPGADRMLVKAS FT ALTEAHVRYAARHELARTVEDVLARRNRALFLDAEAALLAAPEVARILAQELGHDEAWS FT RATLAEFEAVAAHYRLA" FT misc_feature 206219..207325 FT /note="HMMPfam hit to PF01266, FAD dependent FT oxidoreductase, score 3.2e-88" FT misc_feature 206576..206623 FT /note="PS00038 Myc-type, 'helix-loop-helix' dimerization FT domain signature." FT misc_feature 207281..207313 FT /note="PS00978 FAD-dependent glycerol-3-phosphate FT dehydrogenase signature 2." FT CDS 207826..208566 FT /transl_table=11 FT /locus_tag="BPP3098" FT /product="putative IclR-family regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2645" FT /db_xref="GOA:Q7W629" FT /db_xref="InterPro:IPR005471" FT /db_xref="UniProtKB/TrEMBL:Q7W629" FT /protein_id="CAE38385.1" FT /translation="MDTTTLKGLTVLEALVRSGESRSAGELAQELGLVRSNVHRTLQTL FT AHAGYVEAIADSAKYRPTLRLWELGNVVVQRFDIRKQAYPTMQALAAHTGETILLAVRQ FT RLEVCFLDKIQTEKPVGTFVLLGARAPVHCTAPGKAILSRCSHSELLALPEKFERYTAK FT TITTRDALIAELAIARERGYAINTSEWREGVNSLGVPITAPGGEALGAISVTGPDTRVT FT LKKLDGYAPVLVEAARELSRRIGG" FT misc_feature 208003..208554 FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator, score 2.3e-41" FT CDS complement(208574..209443) FT /transl_table=11 FT /locus_tag="BPP3099" FT /product="putative oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2646" FT /db_xref="GOA:Q7W628" FT /db_xref="HSSP:1FK8" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7W628" FT /protein_id="CAE38386.1" FT /translation="MMATPAGTEDEAGQRARRTYVVSGSAWGIGAATRRALEAAGATVI FT GIDLRNAEIEIDLSDAGQVGLVGARLAAQGVSVVDGVLTCAGVSGKTGSPEAIVAVNYF FT GTTGVLEQLHPFLRRSGHGRAVALSSIAMLRQAHAGLYAACLDGRRADALDLARAGGLH FT PRTAYETTKRAVSAWIRHQALQDRWVRHGVLLNAVAPGIIDTPLTRHIVQDRQALDMAL FT ARAPQALGVGRPEHVAALAAFLAGPANGFITGQTIFVDGGHEAQVGAGLPALSAQAQAD FT YDALASRA" FT misc_feature complement(208655..209398) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase, FT score 3.4e-10" FT CDS complement(209440..210459) FT /transl_table=11 FT /locus_tag="BPP3100" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2647" FT /db_xref="GOA:Q7W627" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7W627" FT /protein_id="CAE38387.1" FT /translation="MSGAAPTTREETGKMKTSMHFVRTWCGALCALVVLAGASLPARAE FT YPTRSVTLIVPFPAGGSVDMLARLFAAHVGEPFKDKVVVINRPGASGVVGETAMARAEP FT DGYTIMFQGAPAAINAEIYKQPLYDAKDLQPVGLIMTAPFVVATYPESEIKTLADIKTV FT AAGMPNGLTTAEAGISTRLVAEMYRLITKDKLYLVPYNGGPAAAMSLVRHETGLYFSDL FT TSVTPYILSGQFRPLAVTSAKRVKDHPTIPTTAEAGVPEFTPQTWFGVFTRTGTPPEIV FT QALNQAVDGFLRNPAVIQKIEQVGGTPTHMSVAQFEDYYGRQRLLWRDVIKRAEIPLQ" FT misc_feature complement(209452..210264) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 6.1e-48" FT misc_feature complement(210328..210459) FT /note="Signal peptide predicted for BPP3100 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.955) with cleavage site FT probability 0.947 between residues 44 and 45" FT CDS complement(210456..211838) FT /transl_table=11 FT /locus_tag="BPP3101" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2648" FT /db_xref="GOA:Q7W626" FT /db_xref="HSSP:1D4D" FT /db_xref="InterPro:IPR003953" FT /db_xref="UniProtKB/TrEMBL:Q7W626" FT /protein_id="CAE38388.1" FT /translation="MSAQEVKEVDVVVVGGGLAGHSAAIEVSKAGKSVAVLEKMPDIGG FT STVLSGGSFAFAGTPEQAGQGIDDSPERLRRDLLACAAREQARELIDVYVAHQLDAYRL FT LRHLGVVFDPIQFSSNQSVPRSHPTSPARVMALMNEHLRQQYGVAVQTSAPVSALYRDP FT ASRRIVAVTARHAGRAVEYRARQGVILASGGFSQSPELMSMLAPHLENVLLTGGAGNQG FT DGLKMAWAHGAAIADIDALVPTFGALQEAVPSEPNTILLAYYRGGIVVNSAGERFVDES FT KSYKAIGKASMDQAGARGFQIFDQKVMDLSVRSPKTLDFQRAFDLGRVTAADTIVELAE FT RIGIDPQALARTVSEYNDGIRQQRDRFGRRHLSNQVGEAFPLEHPRYYAYATVPYMATT FT YAGIKVDRRMRVVDVWGKPIDGLYAAGEIIGGAHGRGYMTGASLGKALIFGRVAAWSAI FT SG" FT CDS complement(211871..212731) FT /transl_table=11 FT /locus_tag="BPP3102" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2649" FT /db_xref="GOA:Q7W625" FT /db_xref="InterPro:IPR006992" FT /db_xref="UniProtKB/TrEMBL:Q7W625" FT /protein_id="CAE38389.1" FT /translation="MIVDLRLRPPIPGFARSTLYQAGPKTSHPDFPVEPSVGQCSLPLL FT ISEMDAAGVAVGVVPGRYSMEPFGIVSNDELATLFADYPGRFVGFMGLDLGWPMQRMLD FT EIDARVGTPGFRGVALEPTISADASFCGMNDKRLYPIYEACVKHGVPVSVTLSAVLQAF FT TKRPYEHSNPVQAYQVAIDFPSLDIVIAHAAYPWVMEMIGVCLTCPNVWLSPDLYLTNV FT FPGAQEYAKAAATYLPRRTLFGTGYPAKPFKPMIDAYAAWGWPQDVVAAILGGNAARLL FT RLADQ" FT CDS complement(212981..213673) FT /transl_table=11 FT /locus_tag="BPP3103" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2650" FT /db_xref="InterPro:IPR002818" FT /db_xref="UniProtKB/TrEMBL:Q7W624" FT /protein_id="CAE38390.1" FT /translation="MKILMVLTSHDQLGDTGRKTGFWLEEFAAPYYVFVDTGAHVTLAS FT PAGGQPPLDPKSDEPDAQTEATRRFAADPQAQQALAHTAKLADMRAADFDALFYPGGHG FT PLWDLAESAHSTALIETFLAGGKPVAAVCHAPGVLRHARAADGAPLVAGRQVTGFSNTE FT EAAVQLTEVVPFLVEDELVGLGARYSKAEDWHAYVVNDGLLITGQNPASSERAARAMLT FT ALDNGRGG" FT misc_feature complement(212999..213610) FT /note="HMMPfam hit to PF01965, ThiJ/PfpI family, score FT 1.7e-24" FT CDS 213755..214636 FT /transl_table=11 FT /locus_tag="BPP3104" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2651" FT /db_xref="InterPro:IPR008551" FT /db_xref="UniProtKB/TrEMBL:Q7W623" FT /protein_id="CAE38391.1" FT /translation="MGKTQEFLRLRRIIALSSLLASRKSAMCLAVLALHAIPGLPVLIA FT ANRDEFHARPTAEATRWPGSPAIYAGRDLQAGGTWMGVSDQGRYAVVTNFRDPRNIQPD FT APSRGALVEAFLRGAASAQEYLRDVHARGARYNGFNLIVGDAGGAWYCSNRDGAPRRLA FT AGVYALSNHLLDTPWPKLARTKAAFERIIAATPQPDLAALYAALADPTPAADHELPATG FT LALERERLLSSPFIVSPDYGTRSACILALHDDGRGELHERRFRPDGAIAGQADLDFPWR FT AARAELHRASCV" FT misc_feature 213755..213862 FT /note="Signal peptide predicted for BPP3104 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.974) with cleavage site FT probability 0.478 between residues 36 and 37" FT CDS 214709..215119 FT /transl_table=11 FT /locus_tag="BPP3105" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2652" FT /db_xref="GOA:Q7W622" FT /db_xref="UniProtKB/TrEMBL:Q7W622" FT /protein_id="CAE38392.1" FT /translation="MAAALAAGSIALGGAVQAQGALPAVQQQGSVQFVTGGVGLDESEA FT MKAASKDYPLALTFAARGNGRAGLYLADVAVQILDRTGKPVLDAKADGPYLLAKLPAGT FT YRVKATSGGVEQTRQVSVRPGSTARAVFEWKD" FT misc_feature 214709..214762 FT /note="Signal peptide predicted for BPP3105 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.836 between residues 18 and 19" FT CDS complement(join(215210..215758,215762..216181)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP3106" FT /product="putative exported protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP2653" FT /db_xref="PSEUDO:CAE38393.1" FT misc_feature complement(215222..215755) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 9.6e-39" FT misc_feature complement(216110..216181) FT /note="Signal peptide predicted for BPP3107 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.827 between residues 24 and 25" FT CDS complement(216220..217164) FT /transl_table=11 FT /locus_tag="BPP3108" FT /product="probable dihydrodipicolinate synthase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2654" FT /db_xref="GOA:Q7W621" FT /db_xref="InterPro:IPR019775" FT /db_xref="UniProtKB/TrEMBL:Q7W621" FT /protein_id="CAE38394.1" FT /translation="MAARFPGYVPAGVIPAALMPFNEDLSIDEKSLRAHIRDLASVRGI FT SALCVNGVSQEIPGLTLDEQRRALDVMADEVGDQVPLMHGVYAHGPLDAARIARQAEAG FT GASCLLVFPPAVFARGAAMLPEMTLGHYKAIADATDLPLIVFQYETSTGMAHPLDTLVK FT LAEAVPSVMAIKDRSNNPIEHERNIRVLQSLARPVNVLTTHSAWLMPSLVLGCNGILSG FT SGSVHADLHVALWEAVQANDLAAARAINDQIYPMASCFYSAPTLDMHTRMKEALVMLGR FT LPSGRVRLPWVDLSDAERARVRAALVQAGRLPA" FT misc_feature complement(216235..217140) FT /note="HMMPfam hit to PF00701, Dihydrodipicolinate FT synthetase family, score 4.5e-11" FT misc_feature complement(216454..216498) FT /note="PS00678 Trp-Asp (WD) repeats signature." FT CDS 217383..218069 FT /transl_table=11 FT /locus_tag="BPP3109" FT /product="putative IclR-family regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2655" FT /db_xref="GOA:Q7W620" FT /db_xref="InterPro:IPR005471" FT /db_xref="UniProtKB/TrEMBL:Q7W620" FT /protein_id="CAE38395.1" FT /translation="MTGLPHPTVLRLLRHLTGLGMVAWDPATKIYRLGTLTFELGLAAA FT EHCDIRGLCGDSLDRLQAETQDTCYLTMRSGFDAVCIDRREGASPIRVLTLDIGSRRPL FT GVGAAGLAILDCLPEEEAETVIQASESKLDRYNRMSTDIMRMLLQETRERGYAVCGNWV FT TLGVTAVAVPICIEDGRPIGSLSVSAVSHRMPADRWPGIARALRAEMHEIHRKLQGPSS FT RPGYGG" FT misc_feature 217473..218030 FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator, score 1.5e-18" FT CDS complement(218249..218623) FT /transl_table=11 FT /locus_tag="BPP3110" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2656" FT /db_xref="UniProtKB/TrEMBL:Q7W619" FT /protein_id="CAE38396.1" FT /translation="MNATAAFLLAAALLPLVPAIAAKAGGRRYDNNDPRPWLAGQAGWR FT ARANSAQANTFEALPFFFAAVLYALHSQAPAATLHVLMGAWLVARLVYVALYIGGRGNL FT RSLIWLAALLVNVAILLAGS" FT misc_feature complement(join(218255..218305,218327..218392, FT 218558..218608)) FT /note="3 probable transmembrane helices predicted for FT BPP3110 by TMHMM2.0 at aa 5-22, 77-99 and 106-123" FT misc_feature complement(218561..218623) FT /note="Signal peptide predicted for BPP3110 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.836 between residues 21 and 22" FT CDS complement(218730..219287) FT /transl_table=11 FT /locus_tag="BPP3111" FT /product="putative integral membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2657" FT /db_xref="InterPro:IPR014509" FT /db_xref="UniProtKB/TrEMBL:Q7W618" FT /protein_id="CAE38397.1" FT /translation="MLGFGVALYATRRWFVFSRVSYTLIFLYLCLHAVGAHYTYSLVPY FT DAWWQRLTGHSLDQLLGWERNQFDRLVHFSYGLLLAYPIREIFLRVVEVRGFWGYLLPL FT DVALSTSALYELIEWGAAEFFGGELGVAYLGTQGDIWDAQKDMALAGLGALIAMLLTAL FT FNRGARRDPARDWVDRMKPGHT" FT misc_feature complement(join(218796..218846,219162..219227)) FT /note="2 probable transmembrane helices predicted for FT BPP3111 by TMHMM2.0 at aa 20-42 and 147-164" FT CDS complement(219415..219831) FT /transl_table=11 FT /locus_tag="BPP3112" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2658" FT /db_xref="GOA:Q79GA0" FT /db_xref="InterPro:IPR000352" FT /db_xref="UniProtKB/TrEMBL:Q79GA0" FT /protein_id="CAE38398.1" FT /translation="MLHVLGSLYLDERELDFDMIRAQGAGGQNVNKVSSAIHLRFDVRA FT SSLPDSVKETVLALADRRISSDGVIVIKAQTHRSQEKNRADAVERLLALLREALRPVRP FT RRATRPTLGSQRRRVQRKVQHGETKRLRGRVRDD" FT misc_feature complement(219436..219831) FT /note="HMMPfam hit to PF00472, Peptidyl-tRNA hydrolase FT domain, score 1.8e-13" FT misc_feature complement(219721..219771) FT /note="PS00745 Prokaryotic-type class I peptide chain FT release factors signature." FT repeat_region 219896..219908 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS1001 element" FT repeat_region 219896..221202 FT CDS 219979..221199 FT /transl_table=11 FT /locus_tag="BPP3113" FT /product="transposase" FT /note="transposase for IS1001 element" FT /db_xref="GOA:Q7W617" FT /db_xref="InterPro:IPR002560" FT /db_xref="UniProtKB/TrEMBL:Q7W617" FT /protein_id="CAE38399.1" FT /translation="MLDRKLLESLGGWQGYGVERVEWPEDPGRTLSIYLKPTAKVMLCE FT QCGARCRQVHETTVRRVRDLPLFEYRVVLHVPRRRLWCEQCGGPRLERLAWLGRYQRVT FT DRLAQACSQLLQSSNVQAVARFFELGWHTVKTLDKARLRASVREPDWSKIEYLAMDEFA FT LHKGHRYATVVVDPIGRQVLWIGPGRSRETARAFFEQLPPGAAQRIKAVAIDMTTAYEL FT EIQAHSPQAEIVYDLFHVVAKYGREVIDRVRVDQANQLRQDRPARRIIKSSRWLLLRNR FT DNLDRQQAVRLDELLQANQPLLTVYVLRDELKRLWFYQRPAWARQAWNHWYEQAEQSGI FT AALNTFAQRLKGYLHGILARCRHPLNTSIVEGINNTIKVIKRHAYGYRDQEYFFLKIRA FT AFPGNAR" FT misc_feature 220069..221058 FT /note="HMMPfam hit to PF01610, Transposase, score 7.9e-128" FT repeat_region complement(221190..221202) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS1001 element" FT CDS complement(221247..221888) FT /transl_table=11 FT /locus_tag="BPP3114" FT /product="antioxidant protein" FT /EC_number="3.1.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0965" FT /db_xref="GOA:Q7W616" FT /db_xref="HSSP:1E2Y" FT /db_xref="InterPro:IPR019479" FT /db_xref="UniProtKB/TrEMBL:Q7W616" FT /protein_id="CAE38400.1" FT /translation="MGQLRLGDTAPDFEQKSSIGPLRLYDYLGDSWGVLFSHPADFTPV FT CTTELGYTAKLAGEFAKRNVKVLALSVDPVDSHTKWIDDINDTQSTTVNFPILADDDRK FT VSELYDMIHPNANATLTVRSVFVIDPAKKVRLTITYPASTGRNFDEILRVIDSLQLTDS FT HSVATPVNWKDGEDVIIVPSLKDEAVIKEKFPKGYKALRPYLRITPQPNK" FT misc_feature complement(221430..221873) FT /note="HMMPfam hit to PF00578, AhpC/TSA family, score FT 7.5e-55" FT CDS complement(221971..223797) FT /transl_table=11 FT /locus_tag="BPP3115" FT /product="probable acyl-CoA dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0964" FT /db_xref="GOA:Q7W615" FT /db_xref="InterPro:IPR006092" FT /db_xref="UniProtKB/TrEMBL:Q7W615" FT /protein_id="CAE38401.1" FT /translation="MTYATPLQDFRFALNELAGLEEILKLPGFEEVTPDLVDAILEENA FT RFVQQAIAPLNVAGDTKPPVWNDGQVTTTPGFSQGFADYTAGGWQGLQHPQKWGGQGLP FT KVVAAPAGENIQAASLAFSLCPMLTDGVIEALLTVGSEAQRQTYVPKLIGGQWTGTMNL FT TEPQAGSDLAQVATRAVRQDDGSYRLSGQKIFITYGEHDLAENIIHLVLARTPDAPAGV FT KGISLFIVPKYLVNEDGSRGKRNDVWCASLEHKLGIHGSPTAVLLYGAGKGEVGEGAVG FT YLVGEANRGLEYMFIMMNAARYSVGQQGIGVSERAYQHAQAYARERVQGRAIEGSAAPV FT TIAHHPDVQRMLLTMRALTEGARAVSYVAAAAHDKGTHHPDAEVRARNRAFYEYLVPIV FT KGFSTESAVEVASLGIQVHGGMGFIEETGAAQHYRDARILPIYEGTTAIQANDLVGRKT FT LRDGGATAHASIAAMRDTLKAVAAEAQRADTADHTALRVLRDNFDQAIQSYEGAVEFIL FT AHAASNVRAVYSSSVPYLMLAGVVHGGWQMARAALACRRHLAAGSGDAFHHHKLGTALF FT YGAHILPRALALAAAVRAGDVADSCGSMADIA" FT misc_feature complement(222421..222936) FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain, score 2e-50" FT misc_feature complement(222997..223314) FT /note="HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, FT middle domain, score 1.7e-08" FT CDS complement(224055..224987) FT /transl_table=11 FT /gene="etfA" FT /gene_synonym="etfL" FT /locus_tag="BPP3116" FT /product="electron transfer flavoprotein alpha-subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP0962" FT /db_xref="GOA:Q7W614" FT /db_xref="HSSP:1EFP" FT /db_xref="InterPro:IPR018206" FT /db_xref="UniProtKB/TrEMBL:Q7W614" FT /protein_id="CAE38402.1" FT /translation="MMTTLVIAEHDNAQLKGATLNTIAAASRLGGEVHVLVAGSGAQAV FT AEQAAQAAGVSKVLLADAPQLAEGLAENLAAQVLAVAGGYSHILFAATASGKNVAPRVA FT AKLDVAQISDIIGVESADTFQRPIYAGNAIATVQSGDAVKVITVRTTGFDAVAAQGGSA FT AVEALDAVADSGLSRFVGREVAKSDRPELAGARVVVSGGRGLGSAENFKILDPLADKLG FT AALGASRAAVDAGYAPNDWQVGQTGKIVAPQLYVAVGISGAIQHLAGMKDSKVIVAINK FT DPEAPIFGVADYGLVGDLFQVVPELTGAL" FT misc_feature complement(224148..224228) FT /note="PS00696 Electron transfer flavoprotein alpha-subunit FT signature." FT misc_feature complement(224166..224987) FT /note="HMMPfam hit to PF00766, Electron transfer FT flavoprotein alpha subunit, score 3.2e-122" FT CDS complement(224984..225784) FT /transl_table=11 FT /gene="etfB" FT /gene_synonym="etfS" FT /locus_tag="BPP3117" FT /product="electron transfer flavoprotein beta-subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP0961" FT /db_xref="GOA:Q7W613" FT /db_xref="HSSP:1EFP" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/TrEMBL:Q7W613" FT /protein_id="CAE38403.1" FT /translation="MRSRVSPGNYCYFGDCWMKVLVPVKRVVDYNVKVRVKSDQTGVDI FT ANVKMSMNPFDEIAVEEATRLKEKGAVAEVVAVSCGAAQCQETLRTAMAIGADRAVLVQ FT TDAELQPLAVAKLLKALVDKEQPQLVILGKQAIDDDANQTGQMLAALLDWPQATFASKV FT ELGDGQVTVTREVDGGLETLSLNLPAIVTTDLRLNEPRYVTLPNIMKAKKKPLETVSPQ FT DLGVDPAPRLKTLKVSEPPARQAGIKVPDVATLVDKLKNEAKVV" FT misc_feature complement(224990..225733) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01012, Electron transfer FT flavoprotein beta subunit, score 1e-119" FT misc_feature complement(225209..225271) FT /note="PS01065 Electron transfer flavoprotein beta-subunit FT signature." FT CDS complement(225805..226719) FT /transl_table=11 FT /locus_tag="BPP3118" FT /product="histone deacetylase family protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0960" FT /db_xref="InterPro:IPR000286" FT /db_xref="UniProtKB/TrEMBL:Q7W612" FT /protein_id="CAE38404.1" FT /translation="MYLTHPSCRLHEMGDWHPESPQRLDAISDQLLASGLLPYLQERQA FT PEASRADILRVHTPAYLDSLRAHQPEHGYYAIDADTSMNRHTYEAALRAAGAGVAAVDA FT VLGGEAITAFCSVRPPGHHAERDHAMGFCFLNNVAIAARHALDFHGLQRVALVDFDVHH FT GNGTEHAFAGDPQVLMCSFFQHPFFPSSGADDPAPNMLNVPVAAYTGGASIRTIVREQW FT LPRLHEHRPELILISAGFDAHREDDMAQMGLVEADYAWITDRLVEVADQHCQGRIVSTL FT EGGYNLSALGRSVVAHIRSLSKL" FT misc_feature complement(225811..226719) FT /note="HMMPfam hit to PF00850, Histone deacetylase family, FT score 5.1e-85" FT CDS 226739..227884 FT /transl_table=11 FT /gene="mltB" FT /locus_tag="BPP3119" FT /product="membrane-bound lytic murein transglycosylase B FT precursor" FT /EC_number="3.2.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0959" FT /db_xref="GOA:Q7W611" FT /db_xref="HSSP:1D0K" FT /db_xref="InterPro:IPR011757" FT /db_xref="UniProtKB/TrEMBL:Q7W611" FT /protein_id="CAE38405.1" FT /translation="MFNCRRFLQIGTLSALLAGCATSSQTPQAQHLPAQAATGQADRVR FT IGPDKPVSSDEGPATLTPTGELRPDVRAFAEQLAAQRELPLPQVLASLESTRYNATVAR FT LIAPSGASGKKIWRSWLTYRGRFVEPKRIAWGVEFWTANQDLLNRAAQRYGVPASIIAS FT IIGVETLYGRNVGNFRVVDALATLAFDYPDPAKPERADMFRGQLGDFITLALQDKLDPE FT TRGSYAGAIGMPQFMPGSIMRYAVDGDDDGHIDLTNSVADAVMSVGNFLVEHGWQRGLP FT VFAPVALPADPAPLVAGGLTPTLDWNGLQAAGARPAAGAGRGAWQEHPMGIVDLVEEAR FT GTVQYRTATPNFFALTQYNRSYFYATAVADLAAELQARTGY" FT misc_feature 226739..226846 FT /note="Signal peptide predicted for BPP3119 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.694 between residues 36 and 37" FT misc_feature 226766..226798 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(227941..228852) FT /transl_table=11 FT /gene="cysM" FT /locus_tag="BPP3120" FT /product="cysteine synthase B" FT /EC_number="2.5.1.47" FT /note="ortholog of Bordetella pertussis (BX470248) BP0958" FT /db_xref="GOA:Q7W610" FT /db_xref="HSSP:1O58" FT /db_xref="InterPro:IPR001926" FT /db_xref="UniProtKB/TrEMBL:Q7W610" FT /protein_id="CAE38406.1" FT /translation="MSTPTYPTIEQTVGNTPLVRLQRIPGAAGQARGNVILAKLEGNNP FT AGSVKDRPALSMILRAEERGEIHPGDTLIEATSGNTGIALAMTAAMRGYRMVLIMPDNL FT SLERRAAMTAYGAELILTPAAKGGMEYARDLATAMQAEGKGKVLDQFGNPDNPRAHIEG FT TGPEIWNQTDGRVTHFVSAMGTTGTIMGVSTYLKSRNAAVQVVGAQPAEGSQIPGIRKW FT PEAYMPKIFDRSLVDAYESIAQAEAETMARRLAAEEGIFAGISSAGALVAALRVAERVE FT NATIVFIVCDRGDRYLSTGVFN" FT misc_feature complement(227977..228828) FT /note="HMMPfam hit to PF00291, Pyridoxal-phosphate FT dependent enzyme, score 2.2e-101" FT misc_feature complement(228682..228738) FT /note="PS00901 Cysteine synthase/cystathionine FT beta-synthase P-phosphate attachment site." FT CDS complement(join(228933..229175,229179..229421)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP3121" FT /product="conserved hypothetical protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0956" FT /db_xref="PSEUDO:CAE38407.1" FT CDS complement(229552..230541) FT /transl_table=11 FT /gene="rfaD" FT /gene_synonym="htrM" FT /locus_tag="BPP3123" FT /product="ADP-L-glycero-D-manno-heptose-6-epimerase" FT /EC_number="5.1.3.20" FT /note="ortholog of Bordetella pertussis (BX470248) BP0955" FT /db_xref="GOA:Q7W609" FT /db_xref="HSSP:1EQ2" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/Swiss-Prot:Q7W609" FT /protein_id="CAE38408.1" FT /translation="MIVVTGAAGFIGSNLVRGLNRRGIQDIIAVDDLTDGDKFRNLVDC FT SIADYLDKDEFRERVRGGNLPALRAVLHQGACSDTTERNGRYMLDNNYRVTLELFEYCQ FT AERVPFLYASSAAVYGGSSVYVEDPANEHPLNVYGYSKLLFDQVLRTRMDSLTAQVVGL FT RYFNVYGPHEQHKGRMASVAFHNMNQFLAEGHVRLFAGWDGYEDGGQSRDFISVEDVVA FT VNLHFLDNPGQSGVFNCGTGRAQPFNDVAAAVVNTLRAERGEAALPLAELVKKGLLRYI FT PFPDDLKGRYQSYTQADVGRLRAAGFSAPMRDVQTGVSEYVRYWRALK" FT misc_feature complement(229558..230538) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01370, NAD dependent FT epimerase/dehydratase family, score 7.2e-13" FT CDS complement(230538..231479) FT /transl_table=11 FT /gene="rfaE" FT /locus_tag="BPP3124" FT /product="ADP-heptose synthase" FT /EC_number="2.7.-.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0954" FT /db_xref="GOA:Q7W608" FT /db_xref="InterPro:IPR011913" FT /db_xref="UniProtKB/TrEMBL:Q7W608" FT /protein_id="CAE38409.1" FT /translation="MNQYPAERIARARVLVVGDVMLDRYWFGEVDRISPEAPVPVVRVA FT RREDRLGGAANVARNVAALGAQVTLIGVVGADEVGHRIERMAAEEGVRTDLVSDTEHPT FT TLKMRVLGRQQQLLRVDFEQHPEPAALDGISAAVARQLAQHDIVVLSDYAKGVLDRVES FT IIAAAVGHSLPVLVDPKGDHYERYRGATLVTPNRAEMREAVGRWKTEDELAERAQRLRL FT DLDLEALLVTRSEQGMTLFTDAGRDHADAAAHEVYDVSGAGDTVLATLAVMRAVGLSWG FT DAMRWANRAGGIVVGKLGTSVVTAAELAGEST" FT misc_feature complement(230559..231449) FT /note="HMMPfam hit to PF00294, pfkB family carbohydrate FT kinase, score 1.1e-38" FT misc_feature complement(231255..231326) FT /note="PS00583 pfkB family of carbohydrate kinases FT signature 1." FT CDS complement(231476..232699) FT /transl_table=11 FT /locus_tag="BPP3125" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0953" FT /db_xref="GOA:Q7W607" FT /db_xref="InterPro:IPR013026" FT /db_xref="UniProtKB/TrEMBL:Q7W607" FT /protein_id="CAE38410.1" FT /translation="MDFEPWWLIFVPVLFALGWLAARFDFRQMLRETRTLPDSYFRGLN FT FLLNEQPDRAIDAFVEVAKLDPETTELHFALGSLFRRRGEMERAIRVHQSLLSRSDLPV FT AEREHAQHELAQDFLKAGMLDRAEGAFEQLKDTRYALPALRSLIRIYESEHDWPRAIEA FT VKTLHGLVDEPVPQIVHYYCEQAQAALTAKPVDFDAAHAALDAADHAAGMVERGNAAPA FT KASLVRTAMLRARLAALESDPKRERLYLESILTQAPEFAGLVAEALLTNYRQADQAAAG FT LAMLQQQYQRHASLDLFNVVFRELRVQQGSAPAWAFAREALRHHPSLLGLDRLLEAELA FT SPGAPADAGPVTGADLTLLRSLIHKHTQRLDRYACRSCGFQARRFYWQCPGCNSWETYA FT PRRLEELE" FT misc_feature complement(232634..232684) FT /note="1 probable transmembrane helix predicted for BPP3125 FT by TMHMM2.0 at aa 5-22" FT CDS complement(232742..233056) FT /transl_table=11 FT /locus_tag="BPP3126" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0952" FT /db_xref="UniProtKB/TrEMBL:Q7W606" FT /protein_id="CAE38411.1" FT /translation="MRYLVWALRLLVFVAVLMFALKNTNPVAVTFYADYVVHDVPLIVV FT MLVVFVVGALFGLLLTVPAAMRRRREALRLRREVERLQAAASGTPPVVTPEAVAPMSPL FT " FT misc_feature complement(join(232865..232930,232976..233041)) FT /note="2 probable transmembrane helices predicted for FT BPP3126 by TMHMM2.0 at aa 5-27 and 42-64" FT misc_feature complement(232973..233056) FT /note="Signal peptide predicted for BPP3126 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.926) with cleavage site FT probability 0.510 between residues 28 and 29" FT CDS complement(233248..233607) FT /transl_table=11 FT /gene="ihfB" FT /gene_synonym="himD" FT /locus_tag="BPP3127" FT /product="integration host factor beta-subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP0951" FT /db_xref="GOA:Q7W605" FT /db_xref="HSSP:1IHF" FT /db_xref="InterPro:IPR005685" FT /db_xref="UniProtKB/Swiss-Prot:Q7W605" FT /protein_id="CAE38412.1" FT /translation="MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEI FT RGFGSFSLSQRSPRIGRNPKSGEQVLVPGKQVPHFKAGKELRERVDLVGNDQGDDSSNG FT SSDPLQSVMDMHAMH" FT misc_feature complement(233335..233607) FT /note="HMMPfam hit to PF00216, Bacterial DNA-binding FT protein, score 9e-41" FT CDS complement(233609..235339) FT /transl_table=11 FT /gene="rpsA" FT /gene_synonym="ssyF" FT /locus_tag="BPP3128" FT /product="30S ribosomal protein S1" FT /note="ortholog of Bordetella pertussis (BX470248) BP0950" FT /db_xref="GOA:Q7W604" FT /db_xref="InterPro:IPR003029" FT /db_xref="UniProtKB/TrEMBL:Q7W604" FT /protein_id="CAE38413.1" FT /translation="MDSNLMSSVSTSAIVGGENFADLFAESLKSQDMKSGEVISAEVVR FT VDHNFVVVNAGLKSEALIPLEEFLNDQGELEVQPGDFVSVAIDSLENGYGDTILSRDRA FT KRLSAWLQLEQALENGELVTGTITGKVKGGLTVMTNGIRAFLPGSLVDLRPVKDTTPYE FT GKTLEFKVIKLDRKRNNVVLSRRQVLEASMGEERQKLLETLHEGAVVKGVVKNITDYGA FT FVDLGGIDGLLHITDMAWRRVRHPSEVLQVGQEVEAKVLKFDQEKSRVSLGVKQLGEDP FT WVGLARRYPQGTRLFGKVTNLTDYGAFVEVEAGIEGLVHVSEMDWTNKNVDPRKVVTLG FT EEVEVMVLEIDEDRRRISLGMKQCRQNPWEEFATNFKRGDKVRGAIKSITDFGVFVGLP FT GGIDGLVHLSDLSWTESGEEAVRNFKKGDELEAVVLGIDTDKERISLGIKQLEGDPFNN FT FVATHDKGAVVPGTIKSVEPKGAVITLSVDVEGYLRASEISSGRVEDATTVLKAGENIE FT AMIVNIDRKARSIQLSIKARDNAETAETIQRMSEASASSGTTNLGALLKAKLDQQRNDG FT " FT misc_feature complement(233735..233956) FT /note="HMMPfam hit to PF00575, S1 RNA binding domain, score FT 1.3e-17" FT misc_feature complement(233993..234217) FT /note="HMMPfam hit to PF00575, S1 RNA binding domain, score FT 1.7e-20" FT misc_feature complement(234254..234478) FT /note="HMMPfam hit to PF00575, S1 RNA binding domain, score FT 1.2e-25" FT misc_feature complement(234515..234733) FT /note="HMMPfam hit to PF00575, S1 RNA binding domain, score FT 6.4e-32" FT misc_feature complement(234782..234994) FT /note="HMMPfam hit to PF00575, S1 RNA binding domain, score FT 1.5e-16" FT misc_feature complement(235034..235246) FT /note="HMMPfam hit to PF00575, S1 RNA binding domain, score FT 2.1e-07" FT CDS complement(235510..236181) FT /transl_table=11 FT /gene="cmk" FT /gene_synonym="mssA" FT /locus_tag="BPP3129" FT /product="cytidylate kinase" FT /EC_number="2.7.4.14" FT /note="ortholog of Bordetella pertussis (BX470248) BP0949" FT /db_xref="GOA:Q7W603" FT /db_xref="HSSP:1KDO" FT /db_xref="InterPro:IPR011994" FT /db_xref="UniProtKB/Swiss-Prot:Q7W603" FT /protein_id="CAE38414.1" FT /translation="MAISASAGAAPVITIDGPTASGKGTIAHRVAKQLGWDVLDSGALY FT RLTALAALRRGLPATDEPAVAAVAQALDVRFDGPHVYLEGRDAGHEIRQEEVGNYASCI FT AAYPGVRQALLERQRAFRQPPGLVADGRDMGTVVFPDASLKIFLVADVEARAQRRCKQL FT IKKGISANLDDLLRDMRERDARDTQRAVAPLAPAADAHVLDSSGLTIEQTVQAVLDFWR FT A" FT misc_feature complement(235525..235986) FT /note="HMMPfam hit to PF02224, Cytidylate kinase, score FT 1.9e-64" FT CDS complement(236196..237524) FT /transl_table=11 FT /gene="aroA" FT /locus_tag="BPP3130" FT /product="3-phosphoshikimate 1-carboxyvinyltransferase" FT /EC_number="2.5.1.19" FT /note="ortholog of Bordetella pertussis (BX470248) BP0948" FT /db_xref="GOA:Q7W602" FT /db_xref="HSSP:1G6S" FT /db_xref="InterPro:IPR006264" FT /db_xref="UniProtKB/Swiss-Prot:Q7W602" FT /protein_id="CAE38415.1" FT /translation="MSGLAYLDLPAARLARGEVALPGSKSISNRVLLLAALAEGSTEIT FT GLLDSDDTRVMLAALRQLGVSVGEVADGCVTIEGVARFPIEQAELFLGNAGTAFRPLTA FT ALALMGGDYRLSGVPRMHERPIGDLVDALRQFGAGIEYLGQAGYPPLRIGGGSIRVDGP FT VRVEGSVSSQFLTALLMAAPVLARRSGQDITIEVVGELISKPYIEITLNLMARFGVSVR FT RDGWRAFTIARDAAYRGPGRMAIEGDASTASYFLALGAIGGGPVRVTGVGEDSIQGDVA FT FAATLAAMGADVRYGPGWIETRGVRVAEGGRLKAFDADFNLIPDAAMTAATLALYADGP FT CRLRNIGSWRVKETDRIHAMHTELEKLGAGVQSGADWLEVAPPAPGGWRDAHIGTWDDH FT RMAMCFSLAAFGPAAVRILDPGCVSKTFPDYFDVYAGLLAARD" FT misc_feature complement(236223..237500) FT /note="HMMPfam hit to PF00275, EPSP synthase FT (3-phosphoshikimate 1-carboxyvinyltransferase), score FT 1.8e-184" FT misc_feature complement(236421..236477) FT /note="PS00885 EPSP synthase signature 2." FT misc_feature complement(237213..237257) FT /note="PS00104 EPSP synthase signature 1." FT CDS complement(237521..238420) FT /transl_table=11 FT /gene="tyrA" FT /locus_tag="BPP3131" FT /product="prephenate dehydrogenase" FT /EC_number="1.3.1.12" FT /note="ortholog of Bordetella pertussis (BX470248) BP0947" FT /db_xref="GOA:Q7W601" FT /db_xref="InterPro:IPR003099" FT /db_xref="UniProtKB/TrEMBL:Q7W601" FT /protein_id="CAE38416.1" FT /translation="MSANNSANGQGPLVPVLAVAGVGLIGGSFAAALRHAGQVGTILGV FT GRNPASLARARELGLIDEAVSPEEAAARADLVLLSTPVGGLGAMLARMRDHLRPGCLLT FT DAGSTKSQVVMAARQALGEQVSCFVPGHPIAGGERTGPEAADAGLYVRRAVVLTPLPEN FT AAASVARVRACWHACGAHVVEMDDVAHDRLLASVSHMPHFLAAVYMAQVAGSDDAQARM FT DLAGSGFRDFTRIAAGSPEMWRDIFLSNQAAMQSELAALRRVLDEAEQALGAGDGAGLQ FT ALLERAAHARRNWRKDSK" FT misc_feature complement(237548..238366) FT /note="HMMPfam hit to PF02153, Prephenate dehydrogenase, FT score 1.3e-81" FT misc_feature complement(237887..237922) FT /note="PS00436 Peroxidases active site signature." FT misc_feature complement(238325..238381) FT /note="1 probable transmembrane helix predicted for BPP3131 FT by TMHMM2.0 at aa 13-32" FT misc_feature complement(238331..238420) FT /note="Signal peptide predicted for BPP3131 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.880) with cleavage site FT probability 0.781 between residues 30 and 31" FT CDS complement(238507..239592) FT /transl_table=11 FT /gene="pheA" FT /locus_tag="BPP3132" FT /product="p-protein [includes: chorismate mutase and FT prephenate dehydratase]" FT /EC_number="5.4.99.5" FT /note="ortholog of Bordetella pertussis (BX470248) BP0946" FT /db_xref="GOA:Q7W600" FT /db_xref="InterPro:IPR010957" FT /db_xref="UniProtKB/TrEMBL:Q7W600" FT /protein_id="CAE38417.1" FT /translation="MDDSLQDKLRPLRDRIDAIDAQILDLLSQRARTAQEVGSVKHAAH FT ADGPVLRPEREAEVIRRLQHSNPGPFPKAAVAAVWTEIMSACRGLERGMTVAYLGPQGS FT FSEQAALEHFGHSVQQLPCPSFDEVFRAVEAGQADVGMVPVENSTEGAVNRSLDLLLNT FT PLTILGERSLVIRHCLMSQSGTMDGIKTISAHPQALAQCQGWLTRHYPDLNRVAAASNS FT EAARVAAEDPTVAAIAGEVAAPAWNLRVVAAGIQDDPQNRTRFLAVGHIEPLSSGKDKT FT SLILAVPNRAGAVYDMLAPMAANGVSMTRFESRPARTGQWEYYFYVDVLGHRDDANVAR FT ALAALQAQVAFFKVLGSYPAQ" FT misc_feature complement(238522..238752) FT /note="HMMPfam hit to PF01842, ACT domain, score 1.3e-09" FT misc_feature complement(238774..239307) FT /note="HMMPfam hit to PF00800, Prephenate dehydratase, FT score 8.6e-81" FT misc_feature complement(239317..239583) FT /note="HMMPfam hit to PF01817, Chorismate mutase, score FT 2.4e-13" FT CDS complement(239585..240718) FT /transl_table=11 FT /gene="serC" FT /gene_synonym="pdxF" FT /locus_tag="BPP3133" FT /product="phosphoserine aminotransferase" FT /EC_number="2.6.1.52" FT /note="ortholog of Bordetella pertussis (BX470248) BP0945" FT /db_xref="GOA:Q7W5Z9" FT /db_xref="InterPro:IPR015422" FT /db_xref="UniProtKB/Swiss-Prot:Q7W5Z9" FT /protein_id="CAE38418.1" FT /translation="MMARPWNFSAGPSALPEAVLQQAAAEMLDWHGSGMSVMEMSHRGK FT HFVQICDEAEADLRELLGLPADYAVMFMQGGGLGENAIVPMNLMGRRSTPAADFVVTGH FT WSTRSHKEAGRYGDAQIAASAAEATEIDGQAQSSWTWLPPVDTWRVRKDSAYLHLCSNE FT TIGGVEFTEWPDPASLGAPDVPLVVDVSSHFLSRPLDIARAGLVFAGAQKNAGPAGVTV FT VIARRDLLGHALPICPSAFDYANVAADHSRYNTPPTFAIYVMGLVFKWIKAHGGVRGME FT EANRAKAELLYGYLDGSAFYRNPVQPAVRSRMNVPFVLRDESLNDAFLQGAEAAGLMQL FT KGHKSVGGMRASIYNAMPLAGVQALIDYLKEFERRHG" FT misc_feature complement(239624..240676) FT /note="HMMPfam hit to PF00266, Aminotransferase class-V, FT score 3.2e-68" FT CDS complement(240718..243351) FT /transl_table=11 FT /gene="gyrA" FT /gene_synonym="parD" FT /gene_synonym="nalA" FT /gene_synonym="hisW" FT /gene_synonym="b2231" FT /locus_tag="BPP3134" FT /product="DNA gyrase subunit A" FT /EC_number="5.99.1.3" FT /note="ortholog of Bordetella pertussis (BX470248) BP0944" FT /db_xref="GOA:Q7W5Z8" FT /db_xref="HSSP:1AB4" FT /db_xref="InterPro:IPR013757" FT /db_xref="UniProtKB/TrEMBL:Q7W5Z8" FT /protein_id="CAE38419.1" FT /translation="MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR FT AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAM FT RYTEIRLAKIAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMA FT TNIPPHNLQEVVDGCLYCLRNPECSIDELIELIPAPDFPTGGVIYGITGVREGYRTGRG FT RVIMRAKTHFEDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESD FT KDGMRLVIELKRGEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLIEYFLQ FT HRREVVTRRTVFQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARSW FT DSSLVREMLARVDGDAAGGVAAFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLT FT GLEQDKIIGEYKDVMATIADLLDILARPERITTIISEELQAIKAEFSTSAKDTRRAEIE FT VNATELDTEDLITPMDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQL FT FIANTHDYLLCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEF FT SEDHYVFMATSRGTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSD FT AGKAVRFDENDVRPMGRNARGVRGMMLEEGQTVIALLVAGDETQSVLTATENGYGKRTP FT ITEYTRHGRGTKGMIAIQTSSRNGRVVGAVLVMPSDEIMLITTGGVLVRTRVAEIREMG FT RATQGVTLISVDDGSSLSGVRRVVESDADADDEDGGEDLGEEGGDQGGDDTGAQGKDSE FT PTEPTE" FT misc_feature complement(241837..243306) FT /note="HMMPfam hit to PF00521, DNA gyrase/topoisomerase IV, FT subunit A, score 0" FT CDS 243770..244351 FT /transl_table=11 FT /gene="ompA" FT /locus_tag="BPP3135" FT /product="outer membrane protein A precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP0943" FT /db_xref="GOA:Q7W5Z7" FT /db_xref="HSSP:1OAP" FT /db_xref="InterPro:IPR006690" FT /db_xref="UniProtKB/TrEMBL:Q7W5Z7" FT /protein_id="CAE38420.1" FT /translation="MNKPSKFALALAFAAVTASGAASAQTVDNWRNPFGDVWKNGTNEL FT CWRDAFWTPATGIPGCDGVPVAQKEKPAPMAAKVVFNADTFFDFDKSTLKPEGRQLLDQ FT VAQQAGTIDLETIIAVGHTDSIGTEAYNQKLSERRAAAVKTYLVSKGIDPNRIYTEGKG FT ELQPIASNKTREGRAQNRRVEIEIVGSRKN" FT misc_feature 243770..243841 FT /note="Signal peptide predicted for BPP3135 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.983 between residues 24 and 25" FT misc_feature 244025..244312 FT /note="HMMPfam hit to PF00691, OmpA family, score 7.3e-50" FT misc_feature 244124..244258 FT /note="PS01068 OmpA-like domain." FT CDS 244430..245203 FT /transl_table=11 FT /gene="ubiG" FT /gene_synonym="pufX" FT /locus_tag="BPP3136" FT /product="3-demethylubiquinone-9 3-methyltransferase" FT /EC_number="2.1.1.64" FT /note="ortholog of Bordetella pertussis (BX470248) BP0942" FT /db_xref="GOA:Q7W5Z6" FT /db_xref="InterPro:IPR010233" FT /db_xref="UniProtKB/Swiss-Prot:Q7W5Z6" FT /protein_id="CAE38421.1" FT /translation="MPYPYIEPVGPPTPAPMTTATQSSAPGVNVDQAEVEKFSALAARW FT WDPESEFKPLHAINPLRLGWIQETAGSLSGKRVLDVGCGGGILSESMAVAGAQVTGIDL FT AEKSLKIARLHGLESGVKVDYRAVPVEELAAEQPGQYDVVTCMEMLEHVPDPASVVRAC FT AALAKPGRWVFFSTLNRNPKSFLFAIVGAEYVLRLLPRGTHSYDSFIKPSELAASARQA FT GLEPTGMRGMEYNPITQVYSLSANTSVNYLMSTRK" FT CDS 245200..245877 FT /transl_table=11 FT /locus_tag="BPP3137" FT /product="phosphoglycolate phosphatase 2" FT /EC_number="3.1.3.18" FT /note="ortholog of Bordetella pertussis (BX470248) BP0941" FT /db_xref="GOA:Q7W5Z5" FT /db_xref="InterPro:IPR006346" FT /db_xref="UniProtKB/TrEMBL:Q7W5Z5" FT /protein_id="CAE38422.1" FT /translation="MSALILFDFDGTLADTAPDLAAAANRQRTRKGLEPMPYEALRPMA FT SQGARGLLRAALGLLPDHPDYEPTRLQFLEDYAAESTVHSRLFPGIADLLEDIAQRGLS FT WGIVTNKVTYLTLPIVEHLGLTRDSAVLVCGDTTAHAKPHPLPLLHAAEQAGVEAGRCV FT YVGDDLRDIQAAHAAGMPAVAAAYGYVDMEEDVTTWQAEACAASPRELWSAIEPLLPTR FT ATA" FT misc_feature 245203..245763 FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase, score 1.5e-31" FT CDS 246095..247282 FT /transl_table=11 FT /locus_tag="BPP3138" FT /product="putative sugar efflux transpoter" FT /note="ortholog of Bordetella pertussis (BX470248) BP0940" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7W5Z4" FT /protein_id="CAE38423.1" FT /translation="MLLPIILLSAAGFTILTTEFLIVGLLPPLARDLQVTVSQAGLLVS FT LFAFTVAAAGPVLTALLANLERKRLFVWVLVLFGLANALAAVSPNIWVMAFARFVPALA FT LPVFWSLASATAVELVGPAYAGRAISIIGFGIVAATVLGIPIGVLISDAFGWRAAFAVL FT TAVAWAKALLLLLAYFPKPRTGRQNQRLSTQLRILRDPRLLGHVMLSLLVFTGMFTAYT FT YLADMLERLAGFDGKVVGWTMMAFGGAGILGNWLGGRLVDRSPLGATILFSLIMTAGLL FT FVAQAMQAPYWLALALALWSVAQAALLTVCHVRVIKAAPQAPAFAASLNISGANIGIGL FT GAAVGGHFIDSRGLASLGTVAAVIVLAAVGLAIALVLSRRPSTPHPAAPAPGVEP" FT misc_feature join(246107..246175,246218..246286,246305..246373, FT 246389..246457,246476..246544,246572..246640, FT 246701..246769,246806..246865,246884..246952, FT 246965..247033,247070..247129,247157..247225) FT /note="12 probable transmembrane helices predicted for FT BPP3138 by TMHMM2.0 at aa 5-27, 42-64, 71-93, 99-121, FT 128-150, 160-182, 203-225, 238-257, 264-286, 291-313, FT 326-345 and 355-377" FT misc_feature 246107..247225 FT /note="HMMPfam hit to PF00083, Sugar (and other) FT transporter, score 0.0095" FT misc_RNA 247325..247711 FT /gene="ssrA" FT /product="tmRNA" FT misc_feature 247766..247773 FT /note="Duplication due to IS1001 insertion" FT repeat_region 247774..247786 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS1001 element" FT repeat_region 247774..249080 FT CDS 247857..249077 FT /transl_table=11 FT /locus_tag="BPP3139" FT /product="transposase" FT /note="transposase for IS1001 element" FT /db_xref="GOA:Q7W5Z3" FT /db_xref="InterPro:IPR002560" FT /db_xref="UniProtKB/TrEMBL:Q7W5Z3" FT /protein_id="CAE38424.1" FT /translation="MLDRKLLESLGGWQGYGVERVEWPEDPGRTLSIYLKPTAKVMLCE FT QCGARCRQVHETTVRRVRDLPLFEYRVVLHVPRRRLWCEQCGGPRLERLAWLGRYQRVT FT DRLAQACSQLLQSSNVQAVARFFELGWHTVKTLDKARLRASVREPDWSKIEYLAMDEFA FT LHKGHRYATVVVDPIGRQVLWIGPGRSRETARAFFEQLPPGAAQRIKAVAIDMTTAYEL FT EIQAHSPQAEIVYDLFHVVAKYGREVIDRVRVDQANQLRQDRPARRIIKSSRWLLLRNR FT DNLDRQQAVRLDELLQANQPLLTVYVLRDELKRLWFYQRPAWARQAWNHWYKQAEQSGI FT AALNTFAQRLKGYLHGILARCRHPLNTSIVEGINNTIKVIKRRAYGYRDQEYFFLKIRA FT AFPGNAR" FT misc_feature 247947..248936 FT /note="HMMPfam hit to PF01610, Transposase, score 9.8e-128" FT repeat_region complement(249068..249080) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS1001 element" FT misc_feature 249081..249088 FT /note="Duplication due to IS1001 insertion" FT CDS 249106..249414 FT /transl_table=11 FT /locus_tag="BPP3140" FT /product="hypothetical protein" FT /note="No significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7W5Z2" FT /protein_id="CAE38425.1" FT /translation="MVSFSQPASGTRATRQYRTICTPVDSPQLDRYPPVDALENYGRVP FT SIDDHAPLSVAHGDENETTARIGSNAVRHVDAFDENVRNNAAREPTIRPVAGIAAHR" FT CDS 249626..249808 FT /transl_table=11 FT /locus_tag="BPP3141" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0939" FT /db_xref="InterPro:IPR012933" FT /db_xref="UniProtKB/TrEMBL:Q7W5Z1" FT /protein_id="CAE38426.1" FT /translation="MDGKELIKQLERSGWTLRSVKGSHHVFAHPDRPGHISVPHPKKDL FT GIGLLNSILKAAGLK" FT CDS 249870..250262 FT /transl_table=11 FT /locus_tag="BPP3142" FT /product="phage-related protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0937" FT /db_xref="InterPro:IPR005357" FT /db_xref="UniProtKB/TrEMBL:Q7W5Z0" FT /protein_id="CAE38427.1" FT /translation="MKYPIAIEPGSDTRAWGVVVPDLPGCFSAADEGIDQAIENAKEAI FT ELWIETAIDSGAPIPAATNIANHQANPEFANWIWAIADVDPAVLDETVERVNITIPRRI FT LKRLDDRARAAGESRSSYIAHLAMTA" FT CDS complement(join(250535..251179,251181..251444)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP3143" FT /product="LysR-family transcriptional regulator FT (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0936" FT /db_xref="PSEUDO:CAE38428.1" FT misc_feature complement(250540..251170) FT /note="This hit extended beyond the end of the feature by 0 FT aa and was clipped." FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 6.6e-45" FT misc_feature complement(251238..251417) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.7e-23" FT misc_feature complement(251283..251375) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 251569..252543 FT /transl_table=11 FT /locus_tag="BPP3144" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0935" FT /db_xref="GOA:Q7W5Y9" FT /db_xref="InterPro:IPR006311" FT /db_xref="UniProtKB/TrEMBL:Q7W5Y9" FT /protein_id="CAE38429.1" FT /translation="MNRRHALKVLGAAALPALGWPMSAMAGEFPQKPIRFISPSPPGGV FT TDFLPRLLGQEMSKILGQPVVIENRTGGNQTIATNYVAKAAPDGYTILLATSGALAVNP FT HLIADIPYQPLTDFEPISMLGGVASVVMATHASDARTLAQLLEAGRGKGRKPAFGHTGI FT GTSPHLVLEALKQEAGIDTVDVPYKGTQQLFTDAKGGQFEFLCNNIGPSLPLIRNGDLR FT ALAVTSRKRSPALPDVPAIAETLPGFEVLGWMAAYAPAGTPADVIDRLAAALHASLATD FT EVRKALANFAIDAMPTSPQEAKDFLAAEYRRWGEVVRRSGIRI" FT misc_feature 251569..251646 FT /note="Signal peptide predicted for BPP3144 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 26 and 27" FT misc_feature 251713..252534 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.7e-87" FT CDS 252578..252937 FT /transl_table=11 FT /locus_tag="BPP3145" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0934" FT /db_xref="UniProtKB/TrEMBL:Q7W5Y8" FT /protein_id="CAE38430.1" FT /translation="MQEYRLVVFTNPTEGMEDQFDEWYVNQHLPDVLAVPGFKAGQRFE FT LEQEQLKAGPHPWRFMTVFDIETDDLRHTFDTLISRVNTPLMPMSPSIAEHRIAYAYKA FT VTPKVQARPHGQQPK" FT CDS 253004..254176 FT /transl_table=11 FT /locus_tag="BPP3146" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0933" FT /db_xref="GOA:Q7W5Y7" FT /db_xref="InterPro:IPR002155" FT /db_xref="UniProtKB/TrEMBL:Q7W5Y7" FT /protein_id="CAE38431.1" FT /translation="MTRHALAYVAGAYEHPLRHAPDKSVAQLHAESARGALDDAGLSFA FT DVDGYFCAGDAGLGPAYMVDYLNLTPRHVDGTEIGGGSYLAQIGHAAHAIAAGKCSVAL FT ITLAGRPRSEGQATGTEPRIPGPDRPSAPWDSAYRWTIGTIYGNFARRHMHEYGTTSEQ FT LAWVKVAASHHAQHNPNALLRKVYTVDDVLGSPMVADPLHRLDCCVITDGGGALVIVAP FT EVARSLNRPRIKVVGHGETIRTNNGGHHEDLLVTGAARSAPAAFAQAGVTPADIKYASI FT YDNFTIMVIMQLEDLGFCPKGEGGRFVADGNLISGVGRLPFNTDGGGLCNNHPANRGGM FT TKAIEAVRQLRGEAHPAVQVKNCDLALAAGPGGVYGIGHSHTTVIFERED" FT CDS join(254180..254497,254502..254606) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP3147" FT /product="conserved hypothetical protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0932" FT /db_xref="PSEUDO:CAE38432.1" FT misc_feature join(254237..254497,254502..254573) FT /note="HMMPfam hit to PF01796, Domain of unknown function FT DUF35, score 1.2e-11" FT CDS 254725..255594 FT /transl_table=11 FT /locus_tag="BPP3148" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0931" FT /db_xref="GOA:Q7W5Y6" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7W5Y6" FT /protein_id="CAE38433.1" FT /translation="MIVPFPAGTAVDVVARFLATRLTQQWNQSVYVENRVGADGLIGTV FT AARMAPADGHTILYTGPPFLFVPDLNSQADYDPLKDFRPVARVTAPVYMLAATKSAPYS FT TFREMVETAKRTGGQLDVGTVGAHGTATAAGMARAAGVDINIINYKTTAQLISDSIAGH FT VPMVLSALGSLNTLTHNGSLKALAISGPQRSIIAPEVPTAMEAGAKDFSVVSWNGAFVR FT TGTPDAAVDAIAQAIHKATLSPDFIEFCRAQGLEPAFEDGQAWLKTLPAERSYLNGLLR FT QSGLLAAK" FT misc_feature 254764..255579 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 6.5e-36" FT CDS 255801..257264 FT /transl_table=11 FT /locus_tag="BPP3149" FT /product="putative CoA ligase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0930" FT /db_xref="GOA:Q7W5Y5" FT /db_xref="InterPro:IPR000873" FT /db_xref="UniProtKB/TrEMBL:Q7W5Y5" FT /protein_id="CAE38434.1" FT /translation="MIGYGIAQGEHVAMLSPNCPECLLGNLALGKMGAVSIPINTNAKA FT SLLEYYLTHADCVTAIVADACMEAFAAVAPRLAQLRRVLVIGDAANARRMLEGLPLAVE FT PFPADAASDEAVSNDVRFTDLAYLMFTSGTTGPSKAIMIPHGAAWHWGKHSVHYRYFLP FT EDVDYVCMPLFHANALLLSCTTAIVAGTSVVLDERFSASRFWERVRAFGVTRFNAIGAI FT GNFLWSQPASPVDLEHKVRICSLAPPPPFVHDFERRFGLRVIAGYALSDYGFGASLSPD FT APPEKSLSLGRTCEDVAIRVVDEDDLTLPAGQVGEIVMRIEQPGAAPLGYYKMPEATLA FT AWRNLWFHTGDRGYFDADGYLYLTDRKKDMIRRRGENISSYEVESVIALHPAVLQVAVY FT PLQSEHSEDEVAVTVMLKDGQALDPDELVAFCQQQMAAHMVPRFVEFVDAMPLTPTNKI FT EKYKIKERAQADRSRLWDREGTPGARPGP" FT misc_feature 255801..256994 FT /note="HMMPfam hit to PF00501, AMP-binding enzyme, score FT 2.1e-77" FT misc_feature 256182..256217 FT /note="PS00455 Putative AMP-binding domain signature." FT CDS 257357..257932 FT /transl_table=11 FT /locus_tag="BPP3150" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0929" FT /db_xref="GOA:Q7W5Y4" FT /db_xref="InterPro:IPR007560" FT /db_xref="UniProtKB/TrEMBL:Q7W5Y4" FT /protein_id="CAE38435.1" FT /translation="MKLKPAPNSIFAILLRSSWWISAAIALVLIASALASTRPTFTAVL FT FFAALPFLVIAAMAAWKQRNVPSAARVERATNAARAMPWETFSKVLQEGLRQDGCEVTV FT LQGGPADYVLRRKNRLAVVGAKRWKASRVGVQALQELNAVRETHGAHDAIYVTIGEISA FT PALAYAKANQIQFMAEAELTRLLPQLST" FT misc_feature 257357..257461 FT /note="Signal peptide predicted for BPP3150 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.463 between residues 35 and 36" FT misc_feature join(257393..257461,257471..257539) FT /note="2 probable transmembrane helices predicted for FT BPP3150 by TMHMM2.0 at aa 13-35 and 39-61" FT CDS complement(257957..258946) FT /transl_table=11 FT /locus_tag="BPP3151" FT /product="LysR-type transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0928" FT /db_xref="GOA:Q7W5Y3" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W5Y3" FT /protein_id="CAE38436.1" FT /translation="MQKSAARGLGHIRIKHLRLLELVVQYGSLRKAAEGLHLSEPAASQ FT MLREVESTFGVTLFERGRRGMRPNPFADVLVGRVRVILRELHEMQADVAELEHRQGVSI FT DLGALPRCLHTLVPTTLVRLFGAGFRSRVRIAEGTSRQLLDALDQGAIDIAVTRLLESH FT AGLAGARNFDSAVLYEEAIAIVCSTDHPLSAVDTVTLDMLTQYDWVLPPSTSITGKLIE FT EEFVSAGLRPPVPKVEWLTSASRLTLVQKSNFLGICPASVAAELQQGGRLHVLPVNPRV FT PLPPISVVWRRTKGDIAEIMDMKNALIECAAAMPGAMETGAAARAGEF" FT misc_feature complement(258011..258661) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 4.7e-19" FT misc_feature complement(258728..258907) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.1e-17" FT misc_feature complement(258773..258865) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 259082..260059 FT /transl_table=11 FT /locus_tag="BPP3152" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0927" FT /db_xref="GOA:Q7W5Y2" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7W5Y2" FT /protein_id="CAE38437.1" FT /translation="MMLQRLFAVLLAASTHAAACAQTPAPAYPERTVRFLVPYTPGGNA FT DMLVRLLSLKLTQYWDKPVVVENKPGASGTIAVNTVAKAEPDGHTLVLGAAGNLVVANK FT LIKGLPYDPVEDLKAVSVVATPPFVLVTAEQSRYQDVASLVADAGQRPEQITFGSAGIG FT SANHLSGELLALMKRVKFTHVAYKGMGPALNNVVAGRIDFAFAPIPLVLPQIQAGKLRA FT LAVSGTTRTQVLPDVPTVSEAGVTGFESGAWFTVMVPKNTPDRIVDKINHDLKSAMQDA FT DFIRKLAEEGAVPIGNTPAEASASLQSEMAKWGDLIDRLNLQPI" FT misc_feature 259082..259144 FT /note="Signal peptide predicted for BPP3152 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.535 between residues 21 and 22" FT misc_feature 259223..260047 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 9.6e-97" FT CDS 260185..261258 FT /transl_table=11 FT /locus_tag="BPP3153" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0926" FT /db_xref="GOA:Q7W5Y1" FT /db_xref="InterPro:IPR003819" FT /db_xref="UniProtKB/TrEMBL:Q7W5Y1" FT /protein_id="CAE38438.1" FT /translation="MNEACTPTAASLDSYRNAQAWYGPQLDKHPEYWVHHLTGPELEQL FT DRAVRHADAGGKDITELSQDDFELGELGQRLQQVKHEVLHGRGLYLIRGVPVEQYTMRQ FT SAIAFWALGTNLGLPVSQNGKGHVLGHVANLGLDYADAAVRGYQTSNRLPYHTDSSDIV FT GLLCVRPAKAGGLSSVVSSTTVWNELAARHPEHARTLLDSFHRTRWGEIPEGQKPYSSS FT PVFAPYQGRMYANYVRSAIRKAQALPSVPRLSAQQNEALDCLDALTCDPALYLDMDFKP FT GDVQLLSNFTIFHSRTAYEDWPETERRRHLLRLWLACEGGPPIPEPLLRRNGLASNGRP FT NGIEVPGVKPNAPLVPQ" FT CDS 261336..262196 FT /transl_table=11 FT /locus_tag="BPP3154" FT /product="putative fumarylacetoacetate-family hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0925" FT /db_xref="GOA:Q7W5Y0" FT /db_xref="HSSP:1GTT" FT /db_xref="InterPro:IPR002529" FT /db_xref="UniProtKB/TrEMBL:Q7W5Y0" FT /protein_id="CAE38439.1" FT /translation="MQFVNLDHAGRAMAAVAHPHGYVLLPGPENGDSPELGERIRREED FT LPALGAQALAAGTPLVAGSAAVLAPLLTRPGKIICLGLNYYDHAKEGGRDKPTYPWFFL FT RAPSSLVAHGQAAWLPRVSGHFDYEAELAVVIGKRARHVMPEQALDMVLGYACFNDMSV FT RDYQKKTPQWTVGKNFDRTGGFGPALVLAGDLPPGGRGLGIACRVNGQTVQEANTDDMI FT FDVAEAIGIVTECMTLEPGDVLVMGTPAGVGMARTPPLWLKPQDTVEVEIERVGRLCNP FT VLAEP" FT misc_feature 261606..262106 FT /note="HMMPfam hit to PF01557, Fumarylacetoacetate (FAA) FT hydrolase family, score 1.2e-52" FT CDS complement(262253..263149) FT /transl_table=11 FT /locus_tag="BPP3155" FT /product="putative transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0924" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W5X9" FT /protein_id="CAE38440.1" FT /translation="MNNTRSAYEKIIKDLQGVGFSDYEAKTYIALLLTPNATAYEISKE FT AGIPKANCYSVLEALRKNGAVQAVSENPVKYVAVDPNRYFNQMVELTQLRCEDLKESLK FT NIGHLPQEDLVWSLNDAAAVGLHIEKMIGSARDTIRIKAADTTLEPHLPSLKKAARRGV FT KVLIILFGEDVRPFELGKNCKVYLHEGNGIRVGISHKLITVTRDYKEALVAEVGRDAYG FT SYTENKPIVTLADSLLRHEIYFAEIFSCFGDEIQEKFGPALVKLRESYLPADQADALKV FT FLETADPARLAGKATAA" FT misc_feature complement(262418..263122) FT /note="HMMPfam hit to PF01978, Helix-turn-helix family FT DUF118, score 4.3e-07" FT CDS complement(263191..264006) FT /transl_table=11 FT /locus_tag="BPP3156" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0923" FT /db_xref="GOA:Q7W5X8" FT /db_xref="HSSP:1QWG" FT /db_xref="InterPro:IPR003830" FT /db_xref="UniProtKB/TrEMBL:Q7W5X8" FT /protein_id="CAE38441.1" FT /translation="MDKPRTAPVASLSPLSFDHDHRSKKPRAVGLTSVIDFGPDGFGWT FT GPASLRDYLRCVADYIDYAKIYAMNALILPEEIVRETVRIYRDADIKPYAGGILFEYAY FT LKNELDGYIRHLKKLGMPRIEVSENYLDFGDDERMRHIETMQKHGFEVIYEFGRKNPTE FT PFSLAQLERVIRSNVAMGVHHTIIEQSEIDCVSASNPAILKDIAARDWFRNIFIEADPY FT AFPKGHATLLEKFGDGVNLANITADQVLRLQGFRYGVGRAVNYSILSRI" FT misc_feature complement(263224..263961) FT /note="HMMPfam hit to PF02679, Uncharacterized ACR, FT COG1809, score 2.5e-14" FT CDS 264120..265352 FT /transl_table=11 FT /locus_tag="BPP3157" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0922" FT /db_xref="InterPro:IPR007400" FT /db_xref="UniProtKB/TrEMBL:Q7W5X7" FT /protein_id="CAE38442.1" FT /translation="MDAPAQEPPRTQAPPSPLCVTADPEQLSLPCLYMRGGSSKGGFFL FT AADLPADPLERDATLLAAYGSPDARQIDGIGGADPLTSKAAIVARSGRPDADVEYTFCQ FT VDLTRAQVSTGGNCGNMLAAVGPYAVLRGLIPAREGQNRVRIYTTNTKQVVEASFAVRA FT GVPCVEGPTVVPGVPGSGATVAIDFGDCAGSVSGTLLPTGRAADAIEIDGRPVRVSLVD FT AATPFVYVVAEDIGGDATTTPQDIQNDSALMDRLEQARGWAAVTLGLVDDARKARETSP FT NVPRVMMISAPRDYVAGDTPIKAADINLCVRQLAMQKPHKALAVTGAVCTAIACRIPGS FT VVQEQLRGDTGSEIRLGHPSGALSVDSQVDQTPAGPRVRKAALNRTARLIMAGQLFIAR FT EKIRQLMQRMR" FT CDS 265395..266579 FT /transl_table=11 FT /gene="citB" FT /locus_tag="BPP3158" FT /product="citrate utilization protein B" FT /note="ortholog of Bordetella pertussis (BX470248) BP0921" FT /db_xref="GOA:Q7W5X6" FT /db_xref="InterPro:IPR017896" FT /db_xref="UniProtKB/TrEMBL:Q7W5X6" FT /protein_id="CAE38443.1" FT /translation="MSTPYTESQVMARATIPIAVEDTGIEHDEAQARRILTICNACRYC FT EGFCAVFPAMTRRLDFVKEDVHYLANLCHNCGACLHACQYAAPHEFDVNIPRTLAKVRL FT KTYSEYAWPRALGQLYDRNGLTLSLATAVGLSLFLALLVWLKGALWHAPLQGNFYAIFP FT HNLLVAMFGLVFLYAALALGIGATRFWRGTRKDAAPPSSASGAAAEASFDVLTLRYLGG FT GHGEGCNEESARFTLWRRRFHHMTFYGFMLCFAATGVATVYHYALGWQAPYPVLSLPVL FT LGTAGGIGLLIGPAGLYLLNRKRHADHGDPAQHAMDRGFMALLFFVSLTGLLLLALRDT FT SWMAVLLAVHLGFVMAFFLTMPYGKFAHGIYRSAALLKNAVEKRTPGTLNVGAD" FT misc_feature 265590..265661 FT /note="HMMPfam hit to PF00037, 4Fe-4S binding domain, score FT 0.0035" FT misc_feature join(265761..265829,265887..265955,266130..266198, FT 266226..266294,266352..266405,266418..266486) FT /note="6 probable transmembrane helices predicted for FT BPP3158 by TMHMM2.0 at aa 123-145, 165-187, 246-268, FT 278-300, 320-337 and 342-364" FT CDS 266600..268003 FT /transl_table=11 FT /locus_tag="BPP3159" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0920" FT /db_xref="GOA:Q7W5X5" FT /db_xref="HSSP:1D4D" FT /db_xref="InterPro:IPR012831" FT /db_xref="UniProtKB/TrEMBL:Q7W5X5" FT /protein_id="CAE38444.1" FT /translation="MIDVLVIGGGNAALCAALSAREAGASVLLLEAAPREWRGGNSQHT FT RNLRCMHDAPQDVLVESYPEEEYWQDLLKVTGGITNEHLARLVIRRSSNCRPWMRSHGV FT RFQNSLSGTLHLARTNAFFMGGGKALVNAYYRSAAALGIQVRYDTPVAAIERDGERFVA FT AVLEDGARIEAGSCVLAAGGFESNLEWLDQAWGTNENGERPALQFLIRGTRYNRGVLLR FT HMLDSGADAIGDPTQAHMVAIDARSPLYDGGICTRIDCVPLGIVVNRAGQRFYDEGEDF FT WPKRYAIWGRLVAQQPGQIAWSIIDRKSIGRFMPPVFPGTQADSIEALARKLGLPVEQT FT SRTIAEYNAACISGTFDHTVLDDCRTQGLTPAKTHWASPIVEPPFQGFPLKPGITFTYL FT GLKTDDTAAVRFNDRPSPNLFVAGEMMAGNILGKGYTGGIGMAIGTAFGRIAGAGAAQH FT ALAGRRQAA" FT misc_feature 266600..266665 FT /note="Signal peptide predicted for BPP3159 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.600) with cleavage site FT probability 0.232 between residues 22 and 23" FT CDS complement(268053..269507) FT /transl_table=11 FT /gene="gabD" FT /locus_tag="BPP3160" FT /product="putative succinate-semialdehyde dehydrogenase FT [NADP+]" FT /EC_number="1.2.1.16" FT /note="ortholog of Bordetella pertussis (BX470248) BP0919" FT /db_xref="GOA:Q7W5X4" FT /db_xref="HSSP:1BXS" FT /db_xref="InterPro:IPR016162" FT /db_xref="UniProtKB/TrEMBL:Q7W5X4" FT /protein_id="CAE38445.1" FT /translation="MNVTDGIAQRLMAEYTGILIDGVWQAGEGSFPVLDKYTLAPAAEV FT SRASRRQVAQAVSQCKAAADRGAPAARERAAILRRAAGLLDAYRQDFEAVMMVEGGFTV FT HDISAEFTRAKVTLELSADEALRLTGSMVPFQASPGAEHKLGFTVRVPVGVVAAITPFN FT APLNTVLHKVAPAFAAGNSVVLKPSAFTPLTSALLARVLLEAGMPPEFLAVVQGEGDDV FT GTWLLEEQDVAFYTFTGSTRVGRIIQRAAGLRRTQMELGSIASTIVCADADLEAAVPRI FT ANAAFRKAGQVCTSIQRLYVEDALKNELIERLSRYLDDMPAGDPRAVATRVGPMISEAA FT ATRAQAWIAEAVEAGARLVRGGERQGAVVQPAVLADVPESCSAWSTEVFSPMVSVRGFA FT RFDDVLASANDTPYGLAAGIFTNDHARIMSAVRSLRFGTVHINETSSARCDVMPFGGVK FT DSGFGKEGPGYAAREMTEERLIVFNQ" FT misc_feature complement(268059..269441) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family, score 9.1e-111" FT CDS complement(269612..271033) FT /transl_table=11 FT /locus_tag="BPP3161" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0918" FT /db_xref="GOA:Q7W5X3" FT /db_xref="InterPro:IPR005656" FT /db_xref="UniProtKB/TrEMBL:Q7W5X3" FT /protein_id="CAE38446.1" FT /translation="MREMSMNEETAAKLQGLTRRFAKLVHDLKFEDLPEEVLHKAKLII FT RDGLGNQVAASAISEPARRVVEIVREWGGKPEATVIGYGFKVPAPLAAMCNAMLGHGVE FT LDDAHGSGLIKGGSVMIPSIMALAEANGKSGRDVITAIVAGYEVAVRIAKAINPGHRQR FT GFHTTGTVSLFGAAAGGAKLLGCDEEGIAAAIGLAAMQSAGIQSYLDDPCMAKPFSPGK FT SAFNGTMAAVMASRGFAGPRKALECKEGFFNAYCEDIRVDDLLDGLGERFVIMEVGFKP FT HAACRYAHGPIDLAQQFFEEGVRQEDVEKIDVRMCELSIRQASKPKAPNLNAAMGSTEF FT GVALALAGGRNGLREYWDGFNDQRVHEAAADRTRLIMEPAYGVTGRQAAMAVTLKDGRV FT LQRDQAEPKGEPSNPLTDQELTDKFTGLVDMVETSSQVSGEFSQRLMRLEDEKAIADLI FT GPLKAAGQTPALHAA" FT CDS complement(271133..271912) FT /transl_table=11 FT /locus_tag="BPP3162" FT /product="putative ATP-binding protein of a transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP0916" FT /db_xref="GOA:Q7W5X2" FT /db_xref="HSSP:1G29" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W5X2" FT /protein_id="CAE38447.1" FT /translation="MARDKIVARNVSMRFGDVLAIKDATCSIGEREFVAIIGPSGCGKS FT TFLYVIAGFEGISGGAVELDGEPIRGPGPDRGIVFQEFVLYPWRTVMENVTLGLDIKKT FT PPQEARRRAQKWITLAGLDGFEDAYPSTLSGGMKQRVAIARALTYDPEVILLDEPFGAL FT DVQTKNYMIHDLQSLWTEANKTIVMVTHSVSEAVLLADRVLIFSARPSSIIADIKIDLP FT HPRGAGDEGVKAYEDEVTRILSAEVDKSMSMERRVAA" FT misc_feature complement(271286..271822) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.9e-55" FT misc_feature complement(271472..271516) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(271778..271801) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(271936..272763) FT /transl_table=11 FT /locus_tag="BPP3163" FT /product="probable inner membrane component of FT binding-protein-dependent transport system" FT /note="ortholog of Bordetella pertussis (BX470248) BP0915" FT /db_xref="GOA:Q7W5X1" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7W5X1" FT /protein_id="CAE38448.1" FT /translation="MSSAMASSMPGGDGARIFDRLLVPLVSLGVPLLIWEFLARSGLVS FT DFLFPPPSSIFSTLWSDSGADVHGGQLYRHVYYSMMRLLAGLALAAAVGTLIGILIGLT FT RWGRFVFKPLLSLFMPVPTLAWTPILLLLIGVDNKTTILIVFIAASFEVILNVVAGIEN FT MNVKVFWVARSMGASRLQIFFKVIVPGILPYLITGVRLGSGYAWRALIAAEMLAASSYG FT LGFMIYEASEFMDMTTIYGGLIMIALLGYLIENVLMGAFEERTVGKWGVQVER" FT misc_feature complement(join(271981..272046,272083..272148, FT 272161..272217,272278..272343,272356..272421, FT 272458..272523,272647..272700)) FT /note="7 probable transmembrane helices predicted for FT BPP3163 by TMHMM2.0 at aa 21-39, 80-102, 114-136, 140-162, FT 182-201, 205-227 and 239-261" FT misc_feature complement(272068..272286) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 7e-10" FT CDS complement(272760..273632) FT /transl_table=11 FT /locus_tag="BPP3164" FT /product="probable inner membrane component of FT binding-protein-dependent transport system" FT /note="ortholog of Bordetella pertussis (BX470248) BP0914" FT /db_xref="GOA:Q7W5X0" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7W5X0" FT /protein_id="CAE38449.1" FT /translation="MKPLAATTAHTVMIRPAARRTPGAFAAYAEFGRFMLPIVTLLVFW FT ELAVRAGWIASNIFPSPSMIFARASEQLFSTGPEQGMLFKHIGASLYRAISAFALSVLI FT GIPLGFCLGLMPSVHKWTSPILSVMLPLPAVAWTPILLVAFGQGDRTIITVCFLGAFFP FT VLYSTIQGVKAVSKQSIWVVRSMGGKRRHVLLNVLLPSCLPALISGLKLGMAHSWRTLV FT AAEMLAAISTGLGYMIFAARSYMDVSTMFVGIALLALIGMAIEYGIFGVLEQRTIRKWH FT GASRMGGSK" FT misc_feature complement(join(272817..272882,272913..272969, FT 272991..273056,273117..273173,273195..273260, FT 273291..273356)) FT /note="6 probable transmembrane helices predicted for FT BPP3164 by TMHMM2.0 at aa 92-114, 124-146, 153-172, FT 192-214, 221-240 and 250-272" FT misc_feature complement(272904..273122) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 0.017" FT CDS complement(join(273652..274377,274376..274621)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP3165" FT /product="putative exported protein (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0913" FT /db_xref="PSEUDO:CAE38450.1" FT misc_feature complement(274550..274621) FT /note="Signal peptide predicted for BPP3165 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.995 between residues 24 and 25" FT misc_feature complement(274562..274594) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(join(274726..274854,274858..275298, FT 275300..275725)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP3166" FT /product="LysR-family transcriptional regulator FT (Pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0912" FT /db_xref="PSEUDO:CAE38451.1" FT misc_feature complement(join(274834..274854,274858..275298, FT 275300..275458)) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 7.7e-14" FT misc_feature complement(275528..275707) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.3e-25" FT misc_feature complement(275573..275665) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 275899..276450 FT /transl_table=11 FT /locus_tag="BPP3167" FT /product="putative decarboxylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0911" FT /db_xref="UniProtKB/TrEMBL:Q7W5W9" FT /protein_id="CAE38452.1" FT /translation="MGAIAAHETGDTAATAAWDETVWRILKKEDIRLVTYVPDKVLKPL FT IDRVEADDHFQVVCPAREEEALGIVCGAQMAGMRSILLTQTSGFATLANVLASLPVPYE FT IPVVMVISERGALGDRQLVQVRVWQTMRPILDSLGIPHHTLTHADEVEFVVEEAIRQAF FT ATRSPAALILSPKLTKKSSD" FT CDS 276463..277071 FT /transl_table=11 FT /locus_tag="BPP3168" FT /product="putative decarboxylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0910A" FT /note="Similar to Amycolatopsis orientalis putative FT phosphonopyruvate decarboxylase Cza382.02 SWALL:Q9XBE9 FT (EMBL:AL078635) (371 aa) fasta scores: E(): 3e-20, 43.82% FT id in 162 aa, and to Streptomyces viridochromogenes FT phosphonopyruvate decarboxylase Ppd SWALL:O86938 FT (EMBL:Y14337) (397 aa) fasta scores: E(): 8.2e-18, 39.36% FT id in 188 aa" FT /db_xref="GOA:Q7W5W8" FT /db_xref="InterPro:IPR011766" FT /db_xref="UniProtKB/TrEMBL:Q7W5W8" FT /protein_id="CAE38453.1" FT /translation="MHPASNSAVTRDSAAVMSRYDLTTRLVGRLDDAAVIGGIGSTNHD FT LWASGQRPQNFYMLGSMGLAVPIALGVALAQPSRKVIALEGDGSLLMQLGTLGTVAACR FT PANLTIIVFDNGVYNITGGQRTLTSHTIDVVAMARGAGLRNSHWAADPAHFDALVEQAL FT RGDGPSFIATRTDRQLARMFSEFNPTKIRQGFSAGLGVA" FT misc_feature 276496..276981 FT /note="HMMPfam hit to PF02775, Thiamine pyrophosphate FT enzyme, C-terminal TPP binding domain, score 5.5e-07" FT misc_feature 276670..276729 FT /note="PS00187 Thiamine pyrophosphate enzymes signature." FT CDS 277098..278297 FT /transl_table=11 FT /locus_tag="BPP3169" FT /product="putative aspartate aminotransferase" FT /EC_number="2.6.1.1" FT /note="Similar to Rhizobium meliloti aspartate FT aminotransferase A AatA or r02325 or smc01578 FT SWALL:AATA_RHIME (SWALL:Q02635) (400 aa) fasta scores: E(): FT 6.9e-88, 55.94% id in 395 aa" FT /db_xref="GOA:Q7W5W7" FT /db_xref="HSSP:5BJ4" FT /db_xref="InterPro:IPR015421" FT /db_xref="UniProtKB/TrEMBL:Q7W5W7" FT /protein_id="CAE38454.1" FT /translation="MRFADRMARIAPSPSSMAGQRMRELRAAGRNVIGLTAGEPDFATP FT DNIQQAALRAMRNGQTKYTDVGGVPELKAAVAEKFRRENSLAYRQDQIIVSSGAKQVIF FT NALLCLVQRGDEVVIPAPYWVSYPDMVRFAGGTPVAVACAQQHRFKLQPDELERAITPR FT TRCLILNSPNNPSGAAYDETELKALAQVLLRHPDICVITDDIYEHLLYDGRRFATIAAV FT EPALADRVLTVNGVSKSYAMTGWRIGYAGGPAALIANMVKLQSQSTSCPSAVSQAAAIE FT ALTGPQDIIASSRKLFQARRDLLVRRINAIPGLHCDTPDGAFYVFASCAGLAGKRTPQG FT RTIDNDTDLALHLLDAEGVVVIQGDAYGMPGFFRLSIAASETLIEEAQRRIAAACAALH FT " FT misc_feature 277329..278282 FT /note="HMMPfam hit to PF00155, Aminotransferase class I and FT II, score 1.3e-68" FT misc_feature 277800..277841 FT /note="PS00105 Aminotransferases class-I FT pyridoxal-phosphate attachment site." FT CDS 278294..280429 FT /transl_table=11 FT /locus_tag="BPP3170" FT /product="putative hydantoinase A" FT /EC_number="3.5.2.14" FT /note="Similar to Sulfolobus solfataricus FT N-methylhydantoinase a HuyA-1 or sso1663 SWALL:Q97XP8 FT (EMBL:AE006780) (683 aa) fasta scores: E(): 1.7e-68, 33.28% FT id in 688 aa, and to Pseudomonas sp hydantoin utilization FT protein A HyuA SWALL:HYUA_PSESN (SWALL:Q01262) (690 aa) FT fasta scores: E(): 1.9e-65, 33% id in 703 aa" FT /db_xref="GOA:Q7W5W6" FT /db_xref="InterPro:IPR008040" FT /db_xref="UniProtKB/TrEMBL:Q7W5W6" FT /protein_id="CAE38455.1" FT /translation="MKARHFQHERRTVLAEWSIGIDIGGTFTDLVALDYAGGKLHSLKM FT LTTYDDPSLAVMEGVRQLMATCGIAASEVGRVVHATTLFTNALISRAGARTGLLCNQGF FT MDAIEIGNERKYDLYDLAIDRPPPLVPRDLRREIPGRLDAHGNELEPLDRQAVVAMARS FT LADAGATSIAVCLLHAYASPRHEQQVHAWIRQALPDVSLTLSSEVAPVIREFERGSTTV FT ANAYIKPLADRYLAALEDKLATLGLRSGVLMMLSNGGLGHLRQARRNPIELLESGPAGG FT AIAAAHYGVCDQQPDLLAFDMGGTTAKLTLVEGGAPSIAHSFEAARRKRFAEGSGLPIG FT ITTVHLIEIGAGGGSIAHQDELQLLKVGPLSAGSEPGPACYALGGEAPTVTDANLLLGY FT LNPDYFAGGSLRIDRDRAHMAVRTLARQLDRETVDVAWGVHDIVAENMAGAARVHLAEC FT GRDAGDFVLLCTGGGGPLHAYYVAQKIGVRSIICPPAAGVASAYGLLIAPARADRSRTA FT NFRPETGSLADLEREFAALEAQAREPLELVQDRFGPIEIVRHADGRFIGQAFNLSVRLP FT AGPYDQEGGEATATRTVLVAAFKQAYEQKFGRTPPNVPVELVNLRVAAEAPPRVAFVPE FT PLAGGAPPEPKAWRQVFFKEADDFVRTPVYDRAALTPGFHAAGPALVEDAGSTLVVGPK FT GALLQLASGNIRITIEE" FT misc_feature 278345..280015 FT /note="HMMPfam hit to PF01968, Hydantoinase/oxoprolinase, FT score 3.8e-150" FT CDS 280426..282087 FT /transl_table=11 FT /locus_tag="BPP3171" FT /product="putative hydantoinase B" FT /note="Similar to Pyrobaculum aerophilum FT N-methylhydantoinase B pae2028 SWALL:Q8ZW11 (EMBL:AE009853) FT (516 aa) fasta scores: E(): 2.9e-46, 33.72% id in 516 aa, FT and to Pseudomonas sp hydantoin utilization protein b hyuB FT SWALL:HYUB_PSESN (SWALL:Q01263) (592 aa) fasta scores: E(): FT 6.2e-26, 30.49% id in 564 aa" FT /db_xref="GOA:Q7W5W5" FT /db_xref="InterPro:IPR003692" FT /db_xref="UniProtKB/TrEMBL:Q7W5W5" FT /protein_id="CAE38456.1" FT /translation="MSIMKTADRPHAMNRRQDAIFLEVFWARVRSIADEAAKLIVRTSF FT STLSTEANDFTVVVTDSAGRCLTENSGSIPAFIGTLPATVQAVIAKYPHHTLRPGDVFI FT TNDPWIGTGHLNDVCLVKPVFHLGKVVAFAATAGHVPDIGGRFRSVNAHELFEEGLQIP FT VIRLLDQGAPNEAILDMIRTNVRTPDQTAGDIWSQASAVELVARRLGEVLVEYALPGVD FT DIAEALFERGDRALRKAISALPDGQYRYAMQTDGFEQRLDLAVTVRIEGDAITCDFTGT FT SPQQPRAINCPLGYTTAMAVYAIKCLLVPDIPNSDGMLRAIRVEAPEHSLLNPARPAAV FT GGRASTGHYLPVLIFGAMHAVLPERVMAGAGSPLWSANISGTGADGLPMATVLFFNGGM FT GATCGKDGAAVMSWPSNISPTPVEVAERDIPLFFRYKRLRVDSGGPGQWRGGLGEEVCM FT VSRHDRPLSVVFLAERTREPAPGLGGGQAGVPGAVWINGVAVDVRERHLLNPGDELVMR FT TPGGGGFGPPGQRDPALADHDYRLGYSAAPGTARQS" FT misc_feature 280474..282039 FT /note="HMMPfam hit to PF02538, Hydantoinase B/oxoprolinase, FT score 1.5e-44" FT CDS 282158..283138 FT /transl_table=11 FT /locus_tag="BPP3172" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) FT fasta scores: E(): 1.8e-42, 42.41% id in 323 aa, and to FT Variovorax paradoxus, and 2,4-diphenoxyacetic acid gene FT cluster SWALL:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta scores: FT E(): 1.2e-35, 36.11% id in 324 aa" FT /db_xref="GOA:Q7W5W4" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7W5W4" FT /protein_id="CAE38457.1" FT /translation="MRRQILLPALAIAGAMIGAAASAQPRVETNKPISIVVPFSPGGST FT DAMARILREGLAKALNEQVIVVNQPGASGSVAAAAIKRAEPDGKHLFLGTIAALSIYPV FT LYASRIEYDPLKDFTPVMLVATMPLVVVVPGNSPFKTLQELTAYLKKNGEQANYASAGN FT GSSPHLGAELYKTMAHVNAVHVPYKGGNPALLGLASGETTFMVAVAPEVKPFIEAGKLR FT ALAVTTQQRIAELPDIPTVSESGLPGYEITSWYAFVVRAGTPPATVARLHDALATALKD FT NNAVNTLKGMGFLIEGGAPDQLHALMKSELAKWRQVVDTARISAK" FT misc_feature 282158..282226 FT /note="Signal peptide predicted for BPP3172 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.774 between residues 23 and 24" FT misc_feature 282299..283126 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 9.7e-93" FT CDS 283135..283992 FT /transl_table=11 FT /locus_tag="BPP3173" FT /product="putative nitroreductase" FT /note="Similar to Pseudomonas putida flavoprotein Ecd FT SWALL:Q93AS3 (EMBL:AF417209) (274 aa) fasta scores: E(): FT 1.6e-48, 55.63% id in 266 aa, and to Escherichia coli FT oxygen-insensitive NADPH nitroreductase NfsA or MdaA or FT Mda18 or b0851 SWALL:NFSA_ECOLI (SWALL:P17117) (240 aa) FT fasta scores: E(): 7.6e-22, 37.5% id in 224 aa" FT /db_xref="GOA:Q7W5W3" FT /db_xref="HSSP:1BKJ" FT /db_xref="InterPro:IPR000415" FT /db_xref="UniProtKB/TrEMBL:Q7W5W3" FT /protein_id="CAE38458.1" FT /translation="MKRPVPHPSTGRLHEHLDRRYGGAAAPPLTLAHAAGSDMLSLLLP FT HRSVRAYADTPLDDAVLTALTAAAQSAATSSNLQAWSLVAVTDPARKARLAELAGSQPH FT VVQCPLFLVWLADLSRLARVAAGRNAPAAALPFLELYTLALVDAALAAQNAVVAAEALG FT LGTVFIGGLRNRPERVSAELGLPAQCFAAFGLCVGNPDPSRPASIKPRLPPPAVLHRDQ FT YATSSEADLLERYDERLAAFQAAQGLPAPGWTPQVARRVAGARSLAGRDRLRQALGNLG FT FQLE" FT misc_feature 283246..283692 FT /note="HMMPfam hit to PF00881, Nitroreductase family, score FT 7.7e-24" FT CDS 284066..285436 FT /transl_table=11 FT /locus_tag="BPP3174" FT /product="putative efflux protein" FT /note="Similar to Brucella melitensis multidrug resistance FT protein B bmeii0280 SWALL:Q8YD97 (EMBL:AE009666) (463 aa) FT fasta scores: E(): 1e-77, 50.76% id in 455 aa, and to FT Escherichia coli hypothetical transport protein YebQ or FT b1828 SWALL:YEBQ_ECOLI (SWALL:P76269) (457 aa) fasta FT scores: E(): 7e-74, 49.44% id in 447 aa, and to FT Streptomyces glaucescens tetracenomycin C resistance and FT export protein TcmA SWALL:TCMA_STRGA (SWALL:P39886) (538 FT aa) fasta scores: E(): 7.9e-27, 30.58% id in 425 aa" FT /db_xref="GOA:Q7W5W2" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7W5W2" FT /protein_id="CAE38459.1" FT /translation="MKNLAQQSVEENGLSGPRQQRALVTVTLGVTIAVMDGVIANTALP FT LIAQDLAAPAATSIWIVNAYQIALFMALLPLAVLGESLGYRRVYLVGLYVFTGASLMSA FT LAGSLTALVLARVMQGLGTAGILSVNLALIRYIVPRERLGRAIGMNATVAAIASTAGPV FT LASVVLSIGSWPWLFAIGVPAGIAAILTGSRSLPESHRREGSYDWRSAILSATAFGLAL FT LAVVTFSHRLPALLVLGLLGMAIATGWFLVRRQRAVEAPLLPLDLLRKAAFSLSLCTSI FT CSFAAQTLAYVGLPFYYQLVLGFNAVDTGILLAPWPLALAAIASSSGRLADRWGAAVLG FT SIGMALLAAGLLLLAALPREPAITDVLLRMAICGAGFGLFQPANNRAIMGAAPPSRSGA FT ASGMLGTARLLGQAAGAALVAYLLGRAGPQGAVQCLYAGAACAGVAGVISLARLRRR" FT misc_feature join(284129..284197,284240..284308,284327..284386, FT 284399..284467,284504..284572,284585..284653, FT 284687..284755,284765..284821,284879..284947, FT 284990..285049,285068..285136,285350..285418) FT /note="12 probable transmembrane helices predicted for FT BPP3174 by TMHMM2.0 at aa 22-44, 59-81, 88-107, 112-134, FT 147-169, 174-196, 208-230, 234-252, 272-294, 309-328, FT 335-357 and 429-451" FT CDS complement(285548..287170) FT /transl_table=11 FT /locus_tag="BPP3175" FT /product="putative conserved membrane protein" FT /note="Similar to Ralstonia solanacearum probable FT transmembrane protein rsc1893 or rs03455 SWALL:Q8XY70 FT (EMBL:AL646067) (533 aa) fasta scores: E(): 4.9e-69, 39.96% FT id in 538 aa" FT /db_xref="GOA:Q7W5W1" FT /db_xref="InterPro:IPR000160" FT /db_xref="UniProtKB/TrEMBL:Q7W5W1" FT /protein_id="CAE38460.1" FT /translation="MMRQLDLRRLILGLSMLSLLLALAGTLYASAVVQRDILLSSTLED FT NRVYARKLALAADDLLANAMRDLAYGAQKIGERPDSRVIAQEVERLQAQTNRFNAVTYV FT DANGVFRAVAPHAGNIVGRPVVSAEMRQALEHRGALISDPFIAPTGRWLIAMSQPVFGS FT DGAFAGVLSGLFYLHEGNALKSLLGERDHRNGSYQYAVDRQGVLLYHPQATRIGESQTS FT NPLLAEVRAGRGGAQRFVNTLGTEMLAGYAVVPATGWGVVAQRPVSSVVAATQLLVRRT FT VYALAIWVALGVLCVWWLADRISRPLSQLARAAAELDNPRAADGALSVRAWYREALQIK FT NALMAVRRKIGTKFEQLRQDSLTDPLTGLLNRRGLEEYLRNTPWQDGAMTVLALDIDRF FT KIINDTHGHAAGDEVIQSLAGILRSSARTKDVLARLGGEEFAVLLPDVDVPQAPQLAER FT IRRSIEAAPTEAGVSYTVSIGVACYPAHGASLEAVMRCADEALYAAKAGGRNRTHLYRV FT GMPLPASLTDAAAGSEPSQDLRS" FT misc_feature complement(285638..286102) FT /note="HMMPfam hit to PF00990, GGDEF domain, score 1.6e-62" FT misc_feature complement(286115..286330) FT /note="HMMPfam hit to PF00672, HAMP domain, score 0.21" FT misc_feature complement(join(286271..286327,287075..287140)) FT /note="2 probable transmembrane helices predicted for FT BPP3175 by TMHMM2.0 at aa 10-32 and 281-300" FT misc_feature complement(287078..287170) FT /note="Signal peptide predicted for BPP3175 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.610 between residues 31 and 32" FT CDS 287306..288160 FT /transl_table=11 FT /locus_tag="BPP3176" FT /product="conserved hypothetical protein" FT /note="Similar to many eg. Pseudomonas spR9. hypothetical FT 30.7 kDa protein SWALL:Q9RBV8 (EMBL:AF157797) (283 aa) FT fasta scores: E(): 9.8e-38, 43.31% id in 284 aa" FT /db_xref="GOA:Q7W5W0" FT /db_xref="InterPro:IPR006015" FT /db_xref="UniProtKB/TrEMBL:Q7W5W0" FT /protein_id="CAE38461.1" FT /translation="MKNVIACISSPRRVQSICDYAIWAVRRLGSELELLHVVEREQDAV FT PIADLSGGIWMGTQETLLKELAELDERRQQLAQEQGRQLLQAATERAREAGIQGLAGLA FT RQGYLVDVLLELEDDARLFVMGQHDRPTKPSRLLPDQHLEAAVRALHRPVLVAGPSFVT FT PTRFLVAFDGSATSRKTVEMVSRSPLLQGMQAHVLTAGSDAGEARQALQWAREQLAQGG FT FDAITHHAAERPADALAAYAGQHGIDMLVMGAYGHSRIRQLVLGSTTTEILSRVSLAVL FT ILR" FT CDS complement(288169..288609) FT /transl_table=11 FT /locus_tag="BPP3177" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1747" FT /db_xref="InterPro:IPR009282" FT /db_xref="UniProtKB/TrEMBL:Q7W5V9" FT /protein_id="CAE38462.1" FT /translation="MGLLDSLTSIAGGALGGGDERSANGGMAALLPILVAQLNNYPGGL FT TALIQRFQQGGLGEVIASWVSAGPNQPVTPAQLDSVLEPGMVDQMAQQSGQDRGDVLAN FT LSRLLPGLVDTATPGGQAESGQSFDAGSLLASLSGLLDGKRG" FT CDS complement(288738..289967) FT /transl_table=11 FT /locus_tag="BPP3178" FT /product="putative peptidoglycan-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1746" FT /db_xref="GOA:Q7W5V8" FT /db_xref="HSSP:1D0K" FT /db_xref="InterPro:IPR011970" FT /db_xref="UniProtKB/TrEMBL:Q7W5V8" FT /protein_id="CAE38463.1" FT /translation="MVHMKKAYLRLLCATAFAAAATPALAAPAAATPADLDAYRACLKQ FT LRGDAIKSGVQAATYDAQTASLAPDMDVLGFLDAQPEFKTPIWDYMAGLVDEERIEDGR FT QALARHADVLARAQAEYGVDPATVVAVWGVESNFGKNLGGRPLLTSLSTLSCFGRRQSY FT FRGEFFATLKIIQDEHMQPERLAGSWAGAFGQTQFMPSTYLRLAVDFDGDGRRDLVDSV FT PDALGSTANFLRRAGWQTGQPWGFEVKLPAGMDLAGTGRRNKQPMSAWQARGIKRVDGG FT ALPAGDAPAALLAPAGAQGPVFLVLRNFDALYSYNAAESYALAIAHLSDRLRGDLPFAR FT AWPTDDPGLSRAERRELQELLLARGFDIGKPDGVIGARTRQALQTVQGQLGLPADGRAG FT QKTLKALRTP" FT misc_feature complement(288744..288920) FT /note="HMMPfam hit to PF01471, Putative peptidoglycan FT binding domain, score 0.00042" FT misc_feature complement(289881..289946) FT /note="1 probable transmembrane helix predicted for BPP3178 FT by TMHMM2.0 at aa 7-29" FT misc_feature complement(289890..289967) FT /note="Signal peptide predicted for BPP3178 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.962 between residues 26 and 27" FT CDS complement(290006..290821) FT /transl_table=11 FT /locus_tag="BPP3179" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1745" FT /db_xref="InterPro:IPR011197" FT /db_xref="UniProtKB/TrEMBL:Q7W5V7" FT /protein_id="CAE38464.1" FT /translation="MEAASIAVPGAGASLRAQALDALMTPAWADKLAAVAAIDAGAPVG FT AQQDLAEPAGLLGRPPAPQLVPPSQVRQRSVQSPEGRAALLHALAHIEFNAINLALDAV FT WRYGGLPDAYYLDWLKVAREEAYHFDLLNRHLSGLGHAYGDFPAHNGLWEMAEKTRADL FT LARLALVPRTLEARGLDASPLIRDKLAAAGDADGAAILEIILRDEIGHVAIGNHWYKAL FT CAQRGLDPVAQYAQLASRYGAPRLRGPFNLEARRAAGFDEDELRALLQA" FT misc_feature complement(290765..290821) FT /note="Signal peptide predicted for BPP3179 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.887) with cleavage site FT probability 0.849 between residues 19 and 20" FT CDS 290875..292026 FT /transl_table=11 FT /locus_tag="BPP3180" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1744" FT /db_xref="InterPro:IPR007434" FT /db_xref="UniProtKB/TrEMBL:Q7W5V6" FT /protein_id="CAE38465.1" FT /translation="MATLSLAMPSSVELSVQAGLDHFDAAQWDALAGPQPFVRHAFLRA FT LHDTGCASPGTGWTPCFLALRRAGLLAGAVPLYAKSHSRGEYVFDYAWADAYARNGLPY FT YPKLLSAVPFTPVGGTRLLAHTHADRLLLARGLIQLARQFEVSSLHVLFPSDDDLLALR FT EAGYLIRAGVQFHWRNAGYAGFDDFLAAFSHDKRKKIRQDRKKVAADRVSFRWLRGADI FT DAAALDFFYQCYRHTYLAHGNPPYLNLEFFRRLHAEMPNALVLILAEQDGQPVAAALNL FT QADGVLYGRYWGARRYIPGLHFETCYLQSIEYCIAHGLASFEGGTQGEHKMARGLLPTP FT TWSAHWIADTRFAAAIDDFLGHETHAIDEYRDELATHSPFRKT" FT CDS complement(292153..292641) FT /transl_table= |