EBI Dbfetch

ID   BX640431; SV 1; linear; genomic DNA; STD; PRO; 347894 BP.
XX
AC   BX640431;
XX
DT   09-AUG-2003 (Rel. 76, Created)
DT   23-OCT-2008 (Rel. 97, Last updated, Version 7)
XX
DE   Bordetella parapertussis strain 12822, complete genome; segment 9/14
XX
KW   complete genome.
XX
OS   Bordetella parapertussis
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Alcaligenaceae; Bordetella.
XX
RN   [2]
RP   1-347894
RA   Sebaihia M.;
RT   ;
RL   Submitted (06-AUG-2003) to the EMBL/GenBank/DDBJ databases.
RL   Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute,
RL   Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail:
RL   ms5@sanger.ac.uk
XX
RN   [3]
RA   Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E.,
RA   Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L.,
RA   Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A.,
RA   Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I.,
RA   Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T.,
RA   Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S.,
RA   Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E.,
RA   Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M.,
RA   Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S.,
RA   Barrell B.G., Maskell D.J.;
RT   "Comparative analysis of the genome sequences of Bordetella pertussis,
RT   Bordetella parapertussis and Bordetella bronchiseptica";
RL   Nat. Genet. 35(1):0-0(2003).
XX
DR   EMBL-CON; BX470249.
DR   RFAM; RF00504; Glycine.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..347894
FT                   /organism="Bordetella parapertussis"
FT                   /strain="12822"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:519"
FT   CDS             149..1078
FT                   /transl_table=11
FT                   /locus_tag="BPP2581"
FT                   /product="putative ABC transport protein, inner membrane
FT                   component"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2746"
FT                   /db_xref="GOA:Q7W7D9"
FT                   /db_xref="InterPro:IPR001851"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7D9"
FT                   /protein_id="CAE37875.1"
FT                   /translation="MDIFTQQIINGLTLGSVYALVALGYTMVYGIIGLINFAHGDVVMI
FT                   GAMAATMVAAALVGGDPSTSAFAVLGAGLLVSVPLCMAVGWTAERVAYRPLRRAPRLAA
FT                   LITAIGVSIILQNVAMMVWGRNYLNFPQVLTPAVFEIGGARMSMLQIAIVVIAALIMGA
FT                   LLLVVHKTRLGTAMRATAQNREVAGLMGVNINTVISAAFLIGSALAAIAGMMVTTYYGV
FT                   SQYTMGFMLGLKAFTAAVLGGIGNLVGAMAGGLLLGIIESLGSGYIGDLTGGFLGSHYQ
FT                   DVFAFVVLVMVLIFRPSGLLGERVGDRA"
FT   misc_feature    158..1063
FT                   /note="HMMPfam hit to PF02653, Branched-chain amino acid
FT                   transport system / permease component, score 3.1e-52"
FT   misc_feature    join(191..259,272..325,338..406,452..520,584..652,713..781,
FT                   794..847,860..928,986..1054)
FT                   /note="9 probable transmembrane helices predicted for
FT                   BPP2581 by TMHMM2.0 at aa 15-37, 42-59, 64-86, 102-124,
FT                   146-168, 189-211, 216-233, 238-260 and 280-302"
FT   misc_feature    578..625
FT                   /note="PS00038 Myc-type, 'helix-loop-helix' dimerization
FT                   domain signature."
FT   CDS             1075..2163
FT                   /transl_table=11
FT                   /locus_tag="BPP2582"
FT                   /product="putative ABC transport protein, ATP-binding
FT                   component"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2745"
FT                   /db_xref="GOA:Q7W7D8"
FT                   /db_xref="InterPro:IPR001851"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7D8"
FT                   /protein_id="CAE37876.1"
FT                   /translation="MTRQPNTSGLSARNLVGIALIGIVLAVLPFVLGMAGQSWVRILNF
FT                   ALLYVMLALGLNIVVGFAGLLDLGYIAFYAVGAYTWALLASPHFGLHLPFWAILPMALG
FT                   VACVFGVLLGAPTLKLRGDYLAIVTLGFGEIIRIFLNNLNAPVNITNGPQGINRIDAFK
FT                   VGDFAFGRTETILGIRFTGPEKYYYLLVLLTLLIIVVCVRLQNSRIGRAWEAIREDEIA
FT                   AKAMGINSRNIKLLAFAMGASFGGVAGALFAAMQGFVSPESFSLTESISVLCMVVLGGM
FT                   GHIPGVILGAVILAVLPEFLRAVVEPAQHLLFGAVVLDPEGIRMLLFGLAMVCVMLFRP
FT                   AGLWPSAVRKRELSSTRQGGAA"
FT   misc_feature    1075..1179
FT                   /note="Signal peptide predicted for BPP2582 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.840) with cleavage site
FT                   probability 0.326 between residues 35 and 36"
FT   misc_feature    join(1111..1179,1189..1257,1276..1329,1357..1425,
FT                   1444..1497,1630..1686,1777..1845,1888..1956,2050..2118)
FT                   /note="9 probable transmembrane helices predicted for
FT                   BPP2582 by TMHMM2.0 at aa 13-35, 39-61, 68-85, 95-117,
FT                   124-141, 186-204, 235-257, 272-294 and 326-348"
FT   misc_feature    1177..2118
FT                   /note="HMMPfam hit to PF02653, Branched-chain amino acid
FT                   transport system / permease component, score 5.9e-41"
FT   CDS             2160..2963
FT                   /transl_table=11
FT                   /locus_tag="BPP2583"
FT                   /product="putative ABC transport protein, ATP-binding
FT                   component"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2744"
FT                   /db_xref="GOA:Q7W7D7"
FT                   /db_xref="HSSP:1G6H"
FT                   /db_xref="InterPro:IPR018170"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7D7"
FT                   /protein_id="CAE37877.1"
FT                   /translation="MSRILHAQGLGKRFGGLRALSEISFDIEAGEIYGLIGPNGAGKTT
FT                   LFNVLTGLYVPEEGQCEFNGMSLIGKKPHEVAAAGLARTFQNIRLFANLSAIENVMIGR
FT                   HVRTHAGVLGAVLRTRAERAEEAAIERRAQELLEYVGIGHRANDVARSLPYGDQRRLEI
FT                   ARALATDPRLLALDEPAAGMNASETVVLRQLIEKIRTDGVTVLLIEHDMKLVMGLCDRV
FT                   LVLEYGKVLSMGRPAEVQRDPKVIEAYLGAGAAHDPELHTTEQAP"
FT   misc_feature    2247..2843
FT                   /note="HMMPfam hit to PF00005, ABC transporter, score
FT                   1e-55"
FT   misc_feature    2268..2291
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    2400..2447
FT                   /note="PS00063 Aldo/keto reductase family putative active
FT                   site signature."
FT   CDS             2960..3691
FT                   /transl_table=11
FT                   /locus_tag="BPP2584"
FT                   /product="putative ABC transport protein, ATP-binding
FT                   component"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2743"
FT                   /db_xref="GOA:Q7W7D6"
FT                   /db_xref="HSSP:1JI0"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7D6"
FT                   /protein_id="CAE37878.1"
FT                   /translation="MTASQALLELRGLQVAYGGIRAVRGIDLRVDPGELVCLIGANGAG
FT                   KSTTLRAICGLVPLAGGQVLYDGHSIGGQPSFALVRKGLVMVPEGRGIFGQLTIEENLA
FT                   MGAHVRRDAAQVRQDTQRVFTLFPRLAERRRQAAGTLSGGEQQMVAMGRAMIARPRLLL
FT                   LDEPSMGLAPLMVDKVFEVVRTIAAEGVTILLIEQNARLALEHADRGYVMESGEITLSG
FT                   PAREMLHDPKVRAAYLGEVEA"
FT   misc_feature    3056..3607
FT                   /note="HMMPfam hit to PF00005, ABC transporter, score
FT                   7.1e-48"
FT   misc_feature    3077..3100
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    3380..3424
FT                   /note="PS00211 ABC transporters family signature."
FT   CDS             complement(join(3749..4093,4457..5038))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP2586"
FT                   /product="Putative membrane protein (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2742"
FT                   /note="Similar to Rhizobium loti transmembrane transport
FT                   protein MLL4118 SWALL:Q98ER5 (EMBL:AP003003) (446 aa) fasta
FT                   scores: E(): 6.1e-42, 46.62% id in 414 aa, and to Ralstonia
FT                   solanacearum putative transport transmembrane protein
FT                   RSP0107 or RS03015 SWALL:Q8XTK1 (EMBL:AL646076) (432 aa)
FT                   fasta scores: E(): 6.7e-34, 38.96% id in 426 aa. Note: The
FT                   central and missing part of this CDS reads on the opposite
FT                   direction, BPP2585"
FT                   /db_xref="PSEUDO:CAE37879.1"
FT   misc_feature    complement(join(3785..3850,3881..3946,3983..4048,
FT                   4460..4516,4529..4594,4634..4699,4712..4777,4805..4870,
FT                   4931..4987))
FT                   /note="6 probable transmembrane helices predicted for
FT                   BPP2587 by TMHMM2.0 at aa 28-47, 67-89, 98-120, 124-146,
FT                   159-181 and 185-204"
FT                   /note="3 probable transmembrane helices predicted for
FT                   BPP2585 by TMHMM2.0 at aa 10-32, 44-66 and 76-98"
FT   CDS             4104..4460
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP2585"
FT                   /product="Putative membrane protein (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2742"
FT                   /note="Similar to Rhizobium loti transmembrane transport
FT                   protein MLL4118 SWALL:Q98ER5 (EMBL:AP003003) (446 aa) fasta
FT                   scores: E(): 4.9e-31, 68.54% id in 124 aa, and to Ralstonia
FT                   solanacearum putative transport transmembrane protein
FT                   RSP0107 or RS03015 SWALL:Q8XTK1 (EMBL:AL646076) (432 aa)
FT                   fasta scores: E(): 6e-26, 56.91% id in 123 aa. Note: This
FT                   CDS is an internal region of the pseudogene reading in the
FT                   opposite orientation BPP2586"
FT   misc_feature    join(4248..4316,4344..4412)
FT                   /note="2 probable transmembrane helices predicted for
FT                   BPP2586 by TMHMM2.0 at aa 49-71 and 81-103"
FT   CDS             5135..5737
FT                   /transl_table=11
FT                   /locus_tag="BPP2588"
FT                   /product="putative TetR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2741"
FT                   /db_xref="GOA:Q7W7D5"
FT                   /db_xref="InterPro:IPR012287"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7D5"
FT                   /protein_id="CAE37881.1"
FT                   /translation="MSRKSAPSSTAAPAPKLAADRIRATARELFYREGIRAVGVDAIVS
FT                   AAGVTKPSLYRSFSSKDELAASYLRDYEAEFWSRFDAGAQRYPDDPRAQLRLYLESLAR
FT                   RAVAAGPYRGCGLSNAAVEYPDPDHPARLVAETHKRELRKRLVEMARRMGAREPEILGD
FT                   GLMLLIEGAFISGQLFHGDGPARHVALLADRLIEASL"
FT   misc_feature    5135..5188
FT                   /note="Signal peptide predicted for BPP2588 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.877) with cleavage site
FT                   probability 0.766 between residues 18 and 19"
FT   misc_feature    5198..5338
FT                   /note="HMMPfam hit to PF00440, Bacterial regulatory
FT                   proteins, tetR family, score 7.4e-15"
FT   misc_feature    complement(5787..5794)
FT                   /note="Duplication due to IS1001 insertion"
FT   repeat_region   5795..5807
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS1001 element"
FT   repeat_region   complement(5795..7101)
FT   CDS             complement(5798..7018)
FT                   /transl_table=11
FT                   /locus_tag="BPP2589"
FT                   /product="transposase"
FT                   /note="transposase for IS1001 element"
FT                   /db_xref="GOA:Q7TTN6"
FT                   /db_xref="InterPro:IPR002560"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTN6"
FT                   /protein_id="CAE37882.1"
FT                   /translation="MLDRKLLESLGGWQGYGVERVEWPEDPGRTLSIYLKPTAKVMLCE
FT                   QCGARCRQVHETTVRRVRDLPLFEYRVVLHVPRRRLWCEQCGGPRLERLAWLGRYQRVT
FT                   DRLAQACSQLLQSSNVQAVARFFELGWHTVKTLDKARLRASVREPDWSKIEYLAMDEFA
FT                   LHKGHRYATVVVDPIGRQVLWIGPGRSRETARAFFEQLPPGAAQRIKAVAIDMTTAYEL
FT                   EIQAHSPQAEIVYDLFHVVAKYGREVIDRVRVDQANQLRQDRPARRIIKSSRWLLLRNR
FT                   DNLDRQQAVRLDELLQANQPLLTVYVLRDELKRLWFYQRPAWARQAWNHWYEQAEQSGI
FT                   AALNTFAQRLKGYLHGILARCRHPLNTSIVEGINNTIKVIKRRAYGYRDQEYFFLKIRA
FT                   AFPGNAR"
FT   misc_feature    complement(5939..6928)
FT                   /note="HMMPfam hit to PF01610, Transposase, score 7.9e-128"
FT   repeat_region   complement(7089..7101)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS1001 element"
FT   misc_feature    complement(7102..7109)
FT                   /note="Duplication due to IS1001 insertion"
FT   CDS             join(7285..7548,7550..10246)
FT                   /transl_table=11
FT                   /gene="bapC"
FT                   /locus_tag="BPP2591"
FT                   /product="putative autotransporter"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2738"
FT                   /note="bapc seems to undergo phase variation at a poly C"
FT                   /db_xref="GOA:Q7W7D4"
FT                   /db_xref="HSSP:1DAB"
FT                   /db_xref="InterPro:IPR003992"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7D4"
FT                   /protein_id="CAE37883.1"
FT                   /translation="MNDRKSNSVSPVARYLRFGVAAVAGVAAGALPSSDVDAQAAPAAA
FT                   AAAKIEALSDTDIYSDYEHGIVMAPDNKDYISYKPAEGGPEAPSPFKPAPYVSLGNDVV
FT                   AERIRVDVRGNETLGVYVDSEHRSLTVRDSRIDAYGKPPSIESPNYYGAAAVYAGTLNI
FT                   ENSTVRHNYAAQPFEDAVGVGVTALGEKAILNVTDSEVSGTRGAVVGWGGEATFTNSIV
FT                   RGSTFGLYAEMCDTCRDDDGTSPSIRIKGGVVQGGVGANNVAVAVAGAGKVAIENAELL
FT                   GASGVYATFGVGVDMKGGRILAHNTNVVASQDYADGPYGGVVLTDGSQVNLEGVKVRAT
FT                   GQEAAGLWLLGGKDTSPRASLRNTDVHGEVAAIALGFNGEADISGGSLSAEEGGAVLTT
FT                   LAPDEVEYYYDYSLSMERPAADAPLTPVHVTLSDGARASGETLIAHGGLLPMTLRLSSG
FT                   ADARGDIVTLPPSAPPDFAEQPDAEPKPDAAAQSDAKAKARVMAQVDGGEPVAVPIPAS
FT                   SHPDAPIDVFIDSGAQWRGITKTVNALRIEDGTWTVTGSSAVNSLHLQAGKVAYATPAE
FT                   TNGKFKHLRVKTLSGSGLFEMNASADLSDGDLLVVSDEASGQHKVLVRGAGTEPTGVES
FT                   LTLVELPKGSQAGFTLANRGGVVDAGAFRYRLTPDNGVWGLERTSQLSAVANAALNTGG
FT                   VGAASSIWYAKGNALSKRLGELRLDPGAGGFWGRTFAQKQQLDNKAGRRFDQKVYGFEL
FT                   GADHAIAGQQGRWHVGGLLGYTRARRSFVDDGAGHTDSAHIGAYAAYVADNGFYFDSTL
FT                   RASRFENDFTVTATDAVSIRGKYRANGVGATLEAGKRFTLHDGWFVEPQSEVSLFHASG
FT                   GTYRAANNLSVKDEGGTSAVLRLGLATGRRIDLGKDRVIQPYATLSWLQEFKGVTTVRT
FT                   NGYGLRTDLGGGRAELALGLAAALGRGHSLYTSYEYAKGSKLTLPWTLHLGYRYTW"
FT   variation       7544..7555
FT                   /note="phase variable poly C"
FT   misc_feature    8180..8203
FT                   /note="PS00881 Protein splicing signature."
FT   misc_feature    9008..10240
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF03212, Pertactin, score 5.2e-248"
FT   CDS             complement(10300..11538)
FT                   /transl_table=11
FT                   /gene="amtB"
FT                   /locus_tag="BPP2592"
FT                   /product="probable ammonium transporter"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2737"
FT                   /db_xref="GOA:Q7W7D3"
FT                   /db_xref="InterPro:IPR018047"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7D3"
FT                   /protein_id="CAE37884.1"
FT                   /translation="MDKADISWLLVSTLLVLMMAVPGLALFYGGLVRSKNVLSVLLQVL
FT                   CTFALGLLLWFAYGYSLAFTEGNAFFGGLSRTFFSGMFTPADGTYTLSGTLTELLFASF
FT                   QATFAGITCALIVGSFAERARFSAVLVFTAIWFTFAYIPIAHMVWFASETAPGLLNARG
FT                   ALDFAGGTVVHINAGVAGLVGAYVVGRRIGYGREAMQPHNLPMTFIGAALLWVGWFGFN
FT                   AGSSLAASDGATLAFFNTMTATAGAVLGWLFTEWAVKGKPSMLGAASGAVAGLVGITPA
FT                   AGLVGPVGALVIGVTAGVVCVWGVNGLKRLLRADDALDVFGVHGVGGIVGALLTGVFNA
FT                   KVLGGPGLDSASAIAGQVWVQFEGVLLTIVWSAVVAWIAYKIADKLCGLRVPEDQEREG
FT                   LDVTSHGESAYHS"
FT   misc_feature    complement(10309..11520)
FT                   /note="HMMPfam hit to PF00909, Ammonium Transporter Family,
FT                   score 3e-157"
FT   misc_feature    complement(join(10399..10464,10525..10578,10618..10674,
FT                   10687..10743,10765..10830,10876..10932,10972..11028,
FT                   11089..11154,11176..11241,11362..11427,11443..11508))
FT                   /note="11 probable transmembrane helices predicted for
FT                   BPP2592 by TMHMM2.0 at aa 10-32, 37-59, 99-121, 128-150,
FT                   170-189, 202-221, 236-258, 265-284, 288-307, 320-338 and
FT                   358-380"
FT   misc_feature    complement(10966..11043)
FT                   /note="PS01219 Ammonium transporters signature."
FT   misc_feature    complement(11464..11538)
FT                   /note="Signal peptide predicted for BPP2592 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.697) with cleavage site
FT                   probability 0.630 between residues 25 and 26"
FT   CDS             complement(11564..11902)
FT                   /transl_table=11
FT                   /locus_tag="BPP2593"
FT                   /product="nitrogen regulatory protein P-II"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2736"
FT                   /db_xref="GOA:Q7W7D2"
FT                   /db_xref="HSSP:1GNK"
FT                   /db_xref="InterPro:IPR015867"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7D2"
FT                   /protein_id="CAE37885.1"
FT                   /translation="MKLVIAIIKPFKLDEVRMALSDIGVQGLTVTEVKGFGRQKGHTEL
FT                   YRGAEYAVDFLPKLRVEAAVPDHLVDQVIEAIEQSARTGKIGDGKIFTAPLEEVIRIRT
FT                   GESGEAAL"
FT   misc_feature    complement(11570..11902)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF00543, Nitrogen regulatory protein
FT                   P-II, score 1.5e-58"
FT   misc_feature    complement(11750..11767)
FT                   /note="PS00496 P-II protein urydylation site."
FT   CDS             12572..12877
FT                   /transl_table=11
FT                   /locus_tag="BPP2594"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2735"
FT                   /db_xref="InterPro:IPR007475"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7D1"
FT                   /protein_id="CAE37886.1"
FT                   /translation="MRSSNNRHEGEEAMNRTQQWMEDLQKNISDLIARSPAADVERNVR
FT                   AMMTQTFARLDLITREEFEVQVDLLARARTRVDQLSAQVQQLEARLATLEAGKPQA"
FT   CDS             12984..14486
FT                   /transl_table=11
FT                   /locus_tag="BPP2595"
FT                   /product="putative chelatase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2734"
FT                   /db_xref="GOA:Q7W7D0"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7D0"
FT                   /protein_id="CAE37887.1"
FT                   /translation="MTLAVLASRAIAGWQAPAVRVETHLGSGLPAFAIVGLPDVEVRES
FT                   RERVRAAIQNSGFDFPPGRITVNLSPADLPKASARFDLPIALGILLASGQVAASAAQTA
FT                   ALPDCVWAAELSLSGALVPLAAPLALALAVAREQPGATLVLPAGSAAVAAWVPGIRVLA
FT                   AHTLGEAAAYLAGHAELAPAERRSWPEVEPGPCLSDVRGQPAARRALEVAAAGGHSLLM
FT                   CGPPGAGKSMLAQRLPGLLPPLEQRQALEVAAIAGAGGAPEVLRGQPPFRAPHHSASAA
FT                   ALVGGGARPRPGEISLAHHGVLFLDELPEFERRALESLREPLETGKVVISQALHSVEYP
FT                   AVFQLVAAMNPCPCGWRGHASKACRCTPDQVRRYAARVSGPLVDRIDLWIELPATEPQW
FT                   LAEPPGEPSLPVRERVARCRQRQLARQGCLNAKLSGPALDAHCALGAAARTLLQQAMRR
FT                   LGGSARAAHRALRVARTLADLAHEPEIGAAHIAEAVQYRRPT"
FT   misc_feature    13038..14027
FT                   /note="HMMPfam hit to PF01078, Magnesium chelatase, subunit
FT                   ChlI, score 2.5e-48"
FT   misc_feature    13653..13676
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             14809..15006
FT                   /transl_table=11
FT                   /gene="rpmI"
FT                   /locus_tag="BPP2596"
FT                   /product="50s ribosomal protein l35"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2576"
FT                   /db_xref="GOA:Q7W7C9"
FT                   /db_xref="InterPro:IPR018265"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W7C9"
FT                   /protein_id="CAE37888.1"
FT                   /translation="MPKMKTKKSAAKRFKVRGSGSIKRGQAFKRHILTKKTTKNKRQLR
FT                   GSAAVHETNVASVKAMMPFA"
FT   misc_feature    14818..14853
FT                   /note="PS00936 Ribosomal protein L35 signature."
FT   misc_feature    14818..14994
FT                   /note="HMMPfam hit to PF01632, Ribosomal protein L35, score
FT                   2e-27"
FT   CDS             15022..15381
FT                   /transl_table=11
FT                   /gene="rplT"
FT                   /locus_tag="BPP2597"
FT                   /product="50s ribosomal protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2575"
FT                   /db_xref="GOA:Q7W7C8"
FT                   /db_xref="InterPro:IPR005812"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W7C8"
FT                   /protein_id="CAE37889.1"
FT                   /translation="MPRVKRGVTARARHKKVIAAAKGYRGRRGNVFRIAKQAVMRAGQY
FT                   AYRDRRNKKRTFRALWITRINAAVREQGMSYSVFIAGLKKAAIELDRKVLADLAVRDKA
FT                   GFAAIVQQAKAALAA"
FT   misc_feature    15025..15348
FT                   /note="HMMPfam hit to PF00453, Ribosomal protein L20, score
FT                   4.4e-56"
FT   misc_feature    15181..15231
FT                   /note="PS00937 Ribosomal protein L20 signature."
FT   CDS             15432..16478
FT                   /transl_table=11
FT                   /gene="pheS"
FT                   /locus_tag="BPP2598"
FT                   /product="phenylalanyl-tRNA synthetase alpha chain"
FT                   /EC_number="6.1.1.20"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2574"
FT                   /db_xref="GOA:Q7W7C7"
FT                   /db_xref="InterPro:IPR004188"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W7C7"
FT                   /protein_id="CAE37890.1"
FT                   /translation="MRFEGSNSMTLLVDDLVSQAQERFAAASDAAALENAKARFLGKEG
FT                   ALTVLLKALGKLDPEQKREMGARINQAKQQIEALLNARRAALAQAELDARLASETIDVT
FT                   LPGRGKAAGGIHPVIRTWERVEEIFRSIGFDVADGPEVENDWTNFTALNNPLDHPARSM
FT                   QDTFYVDMHDADGLPLLLRTHTSPMQVRYARMHKPPIKVIAPGRTYRVDSGATHSPMFH
FT                   QVEGLWIAEDISFADLKGVYTDFLRCFFESDDLVVRFRPSFFPFTEPSAEIDMMFTSGP
FT                   NRGRWLEISGSGQVHPQVVRNFGLDPERYIGFAFGSGLERLTMLRYGVNDLRQFYEGDL
FT                   RFLRQFNE"
FT   misc_feature    15495..15722
FT                   /note="HMMPfam hit to PF02912, Aminoacyl tRNA synthetase
FT                   class II, N-terminal domain, score 1.4e-23"
FT   misc_feature    15780..16430
FT                   /note="HMMPfam hit to PF01409, tRNA synthetases class II
FT                   core domain (F), score 2.9e-104"
FT   misc_feature    16056..16106
FT                   /note="PS00179 Aminoacyl-transfer RNA synthetases class-II
FT                   signature 1."
FT   misc_feature    16377..16406
FT                   /note="PS00339 Aminoacyl-transfer RNA synthetases class-II
FT                   signature 2."
FT   CDS             16491..18908
FT                   /transl_table=11
FT                   /gene="pheT"
FT                   /locus_tag="BPP2599"
FT                   /product="phenylalanyl-tRNA synthetase beta chain"
FT                   /EC_number="6.1.1.20"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2573"
FT                   /db_xref="GOA:Q7W7C6"
FT                   /db_xref="InterPro:IPR002547"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W7C6"
FT                   /protein_id="CAE37891.1"
FT                   /translation="MQFPESWLRSLVNPSIGTDELAHRLTMAGLEVEETEPAAPPFTGV
FT                   VVARIVDIAPHPDADKLRVCQVDDGSGALLQIVCGAPNAAAGLTVPLARVGAELPGGMK
FT                   IGVAKMRGVQSSGMLCSARELGLSQDHAGLLELPAALRPGTDIRAALDLDDTLFTLKLT
FT                   PNRADCLSIFGVAREVAALTGTPLTAPAAEPVPVTIDHRLPVAIQAPDLCGRFAGRVIQ
FT                   GVNARAATPEWMKTRLERAGQRSVSALVDISNYVMLEVGRPSHVFDLDKIGGDLSVRWA
FT                   REGETLELLNGQAVALDPKVGVVVAGEQVESLAGIMGGEATSVTLDTRNIYLEAAFWWP
FT                   GAIAGRARRYKFSSEASHRFERGVDYASIPEHIELITRLILDICGGQAGPVDDQCVNLP
FT                   VREPVRMRLARCHRVLGVAVERAEVAQIFTRLGLPFQEQGDDFVVTPPSYRFDIEIEED
FT                   LIEEVARVYGFERIPDVPPVARAKMHAQPEARRGAHAVRRLVAARDYQEVVNYSFVEAA
FT                   WERDYAGNDNLVRLVNPIASHLSVMRSSLIAGLVAIVRHNANRKQSRVRLFELGRVFHR
FT                   DPQLADGPLEVAGVRQPLMLAGVAWGGAVEEQWGVPHRQVDFYDVKQDVEALFGARADA
FT                   LRFVADRYPALHPGRSARIELDGQPIGWLGELHPQWTQQADLHHAPVVFELDFEALAER
FT                   RLPAVRELSRQPAVVRDLALWVDAKLPAQAMLDTVAAAIARDPQLSVVQDAQVFDVWRE
FT                   KPVAGQTVTEKSLAFRFWLQDTEVTLDEARVADCIARIKDALVAAHNARQRA"
FT   misc_feature    16623..16928
FT                   /note="HMMPfam hit to PF01588, Putative tRNA binding
FT                   domain, score 1.3e-34"
FT   misc_feature    16935..17375
FT                   /note="HMMPfam hit to PF03483, B3/4 domain, score 5e-66"
FT   misc_feature    17691..17897
FT                   /note="HMMPfam hit to PF03484, tRNA synthetase B5 domain,
FT                   score 1.4e-23"
FT   misc_feature    18597..18902
FT                   /note="HMMPfam hit to PF03147, Ferredoxin-fold anticodon
FT                   binding domain, score 2.1e-05"
FT   CDS             18914..19255
FT                   /transl_table=11
FT                   /gene="ihfA"
FT                   /locus_tag="BPP2600"
FT                   /product="integration host factor alpha-subunit"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2572"
FT                   /db_xref="GOA:Q7W7C5"
FT                   /db_xref="HSSP:1IHF"
FT                   /db_xref="InterPro:IPR005684"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W7C5"
FT                   /protein_id="CAE37892.1"
FT                   /translation="MGTTMLAEPRTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRD
FT                   ALARGDSVKLSGFGNFQVRDKPPRPGRNPKTGETIPIAARRVVTFHASQKLKSVVEQPS
FT                   SPPDPASAE"
FT   misc_feature    18947..19216
FT                   /note="HMMPfam hit to PF00216, Bacterial DNA-binding
FT                   protein, score 6.1e-48"
FT   misc_feature    19082..19141
FT                   /note="PS00045 Bacterial histone-like DNA-binding proteins
FT                   signature."
FT   CDS             19314..19724
FT                   /transl_table=11
FT                   /locus_tag="BPP2601"
FT                   /product="putative MerR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2571"
FT                   /db_xref="GOA:Q7W7C4"
FT                   /db_xref="InterPro:IPR000551"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7C4"
FT                   /protein_id="CAE37893.1"
FT                   /translation="MTRTEPTVTTLPPIPAKRYFTIGEVSDLCGVKPHVLRYWEQEFTQ
FT                   LKPVKRRGNRRYYQHHEVLLIRRIRSLLYEQGFTISGARNRLGDARDAAHDAEAAVRLS
FT                   AGELQALRNELGDISSMLGEALGGQSENAANA"
FT   misc_feature    19380..19487
FT                   /note="HMMPfam hit to PF00376, Bacterial regulatory
FT                   proteins, merR family, score 0.00044"
FT   tRNA            19897..19973
FT                   /note="tRNA Pro anticodon GGG, Cove score 77.19"
FT   CDS             20188..20781
FT                   /transl_table=11
FT                   /locus_tag="BPP2602"
FT                   /product="putative lipoprotein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2569"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7C3"
FT                   /protein_id="CAE37894.1"
FT                   /translation="MMIENLPRMRRAGWAAAAIAVAGLAFTGCTTTTPNNQAAADQRNE
FT                   INAGADATLSKLYTASPQAKDLVQRARGVLVFPSVMGASFIVGGEHGKGVLRTGGKNAG
FT                   YYSTTSGSVGLQAGAQSRAYVLLFMTDEALAQFRQSSGWTAGADASVAVATIGANGRID
FT                   TNTAKQPIVGFVLNNAGLMAGVSIEGAKINKLDL"
FT   misc_feature    20188..20301
FT                   /note="Signal peptide predicted for BPP2602 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.997) with cleavage site
FT                   probability 0.425 between residues 38 and 39"
FT   misc_feature    20242..20274
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(21321..22034)
FT                   /transl_table=11
FT                   /locus_tag="BPP2603"
FT                   /product="hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2583"
FT                   /db_xref="GOA:Q7W7C2"
FT                   /db_xref="InterPro:IPR013216"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7C2"
FT                   /protein_id="CAE37895.1"
FT                   /translation="MAPSSHEWTDTLKDVYTARAANADLNARYIPLLPVNQRIQHERDR
FT                   ALAYMLRQHLSVPPAQARVLEVGCGSGSNLLDLIRLGFDPANLMGNDLMDSRVEQARHR
FT                   LPQAVPILAGNALDLDLEREGFDVLYQSTVFTSILDAQARRDLAQRMWHWTKPGGGVLW
FT                   YDFAYNNPRNPNVRGVPLREVRALFPHARIHTARITLAPPLARRLPATLYAPVNSLCPF
FT                   LRTHLLCWIGKPAAP"
FT   CDS             complement(22157..22630)
FT                   /transl_table=11
FT                   /locus_tag="BPP2604"
FT                   /product="putative acetyltransferase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2584"
FT                   /db_xref="GOA:Q7W7C1"
FT                   /db_xref="InterPro:IPR016181"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7C1"
FT                   /protein_id="CAE37896.1"
FT                   /translation="MAPRDLLIRPVRPGDEPRWRELWDGYTRFYEREPVEAVTRHTWRR
FT                   IMDPAQAVYAIVAESATHGVLGIANYLLHENTSTLAPVCYLQDLYVDPQARAQGAGRRM
FT                   LDWLVDEARTRGWSRLYWNTRENNYRARALYDQYTPHSGFVRYVVHTSPHKPA"
FT   misc_feature    complement(22208..22462)
FT                   /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT)
FT                   family, score 2.3e-11"
FT   CDS             complement(22633..23010)
FT                   /transl_table=11
FT                   /locus_tag="BPP2605"
FT                   /product="putative exported protein"
FT                   /note="Similar to Escherichia coli O157:H7 hypothetical
FT                   protein Yqjc or Z4451 or ECS3979 SWALL:Q8XAH3
FT                   (EMBL:AE005539) (127 aa) fasta scores: E(): 6.7e-10, 41.32%
FT                   id in 121 aa, and to Yersinia pestis putative exported
FT                   protein YPO0572 SWALL:Q8ZID3 (EMBL:AJ414143) (126 aa) fasta
FT                   scores: E(): 7.3e-09, 43.29% id in 97 aa"
FT                   /db_xref="InterPro:IPR009468"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7C0"
FT                   /protein_id="CAE37897.1"
FT                   /translation="MSRLVWAATILACDQALAQPPAPLTGCAAKQDRIETELAQARAHG
FT                   NTGRIKGLEEALAGARHCDDASLRADRERDVRDATDKVAERQRELDEERQEGDADDIAK
FT                   AERKLREAQQDLDNARAELTR"
FT   misc_feature    complement(22957..23010)
FT                   /note="Signal peptide predicted for BPP2605 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.954) with cleavage site
FT                   probability 0.903 between residues 18 and 19"
FT   CDS             23135..24052
FT                   /transl_table=11
FT                   /locus_tag="BPP2606"
FT                   /product="Putative beta-lactamase"
FT                   /note="Similar to Xanthomonas maltophilia L2 beta-lactamase
FT                   BlaL2 SWALL:Q9F279 (EMBL:AF299368) (303 aa) fasta scores:
FT                   E(): 2.2e-47, 49.49% id in 297 aa, and to Xanthomonas
FT                   maltophilia beta-lactamase L2 precursor SWALL:BLA2_XANMA
FT                   (SWALL:P96465) (303 aa) fasta scores: E(): 4.5e-45, 48% id
FT                   in 300 aa"
FT                   /db_xref="GOA:Q7W7B9"
FT                   /db_xref="HSSP:1ONG"
FT                   /db_xref="InterPro:IPR001466"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7B9"
FT                   /protein_id="CAE37898.1"
FT                   /translation="MNRRGFGAGMLAALGAACMPPWARAGMRRAARPADAAAQAQRQLA
FT                   LLEQRHGVRLGVQVHDRDSDRAFSHRADERFPMCSTFKLLAAGAVLARADRGDDSLRRL
FT                   IRYGAADIVAYSPVTGPRQAEGMTLEQLCEAAVTRSDNTAGNLLLSTLGGPPGLTAYAR
FT                   GLGDRMTRLDRIETALNEARPGDPRDTTTPAAMAGNLQRLLLGDALQSASRQRLADWLL
FT                   ASQTGDTRLRAGLPAGWRIGDKTGAGGHGTNNDIGVIWPRDGAPVLISAYLTQSSASRE
FT                   AQNAVLAEVGRIAAHAVAAWRLGS"
FT   misc_feature    23255..24031
FT                   /note="HMMPfam hit to PF00144, Beta-lactamase, score
FT                   3.4e-110"
FT   misc_feature    23360..23407
FT                   /note="PS00146 Beta-lactamase class-A active site."
FT   CDS             complement(24067..24420)
FT                   /transl_table=11
FT                   /locus_tag="BPP2607"
FT                   /product="hypothetical protein"
FT                   /note="No significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7B8"
FT                   /protein_id="CAE37899.1"
FT                   /translation="MGTATNPQSPARPDAPMPLRLLAPMLVLFLAACSSMSEVTPVAKN
FT                   QYTVSYNAGMKAATWVEIKNQARERARQYCEAQGRKFARPEITSNHATGLMPKKAVVTF
FT                   YCDEKPQPPAEKN"
FT   CDS             complement(24438..24797)
FT                   /transl_table=11
FT                   /locus_tag="BPP2608"
FT                   /product="Putative regulatory protein"
FT                   /note="Similar to the N-terminal region of Rhizobium
FT                   meliloti putative transcription regulator protein R03031 or
FT                   SMC02504 SWALL:Q92LL1 (EMBL:AL591792) (150 aa) fasta
FT                   scores: E(): 2.2e-07, 54.41% id in 68 aa, and to N- and
FT                   C-treminal regions (there is no similarity with the central
FT                   region) of Pseudomonas putida putative transcriptional
FT                   regulator SWALL:Q93FY6 (EMBL:AF302763) (153 aa) fasta
FT                   scores: E(): 3.5e-07, 39% id in 141 aa"
FT                   /db_xref="GOA:Q7W7B7"
FT                   /db_xref="InterPro:IPR019887"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7B7"
FT                   /protein_id="CAE37900.1"
FT                   /translation="MTPPPAALYRAPDRNRPAPAMDPRLDAIDRQLLSLLQANAREPAA
FT                   ILARKLHLARSTVVARIARLERDGVIAGYGVRCETHEQLDDLLDHIGLIDGVKQTQTSI
FT                   VLSRRLDRRSAIAPG"
FT   CDS             complement(24808..25410)
FT                   /transl_table=11
FT                   /locus_tag="BPP2609"
FT                   /product="Hypothetical protein"
FT                   /note="No significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7B6"
FT                   /protein_id="CAE37901.1"
FT                   /translation="MKTIRNYAPPSPAALRRLQETLHYSTAQMNQLAGLDDQTPWPRYV
FT                   DGAEPHALGRQRLLYMAARLALPEAQWRLVLERMRNIGARFDYDDGEPLPAPGAVAPEP
FT                   VTEVKFGITLSSLSGAFHEMEQLREFAHFAHEAGVDTLVARAWFGRDDDICRFEPRHAT
FT                   PAVDGQQDRLFEAAARAIGHFEFGGRIYQGGLPTEPD"
FT   CDS             25514..25795
FT                   /transl_table=11
FT                   /locus_tag="BPP2610"
FT                   /product="hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2581"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7B5"
FT                   /protein_id="CAE37902.1"
FT                   /translation="MRPRKFCDIEGDMDIQEQIAVIVHTVSHQGGRIDALHSTLASVLH
FT                   LVKGSPGLREAIEAHLEQSYANLLARSENPQYVAGFESVRDTVVAALK"
FT   CDS             complement(25910..27358)
FT                   /transl_table=11
FT                   /locus_tag="BPP2611"
FT                   /product="putative GntR-family regulatory protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2580"
FT                   /db_xref="GOA:Q7W7B4"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7B4"
FT                   /protein_id="CAE37903.1"
FT                   /translation="MHHRAMNTQPLYLRLADHYRRAIQTGVLAPAQRMPSVRNLVRAHH
FT                   VSLSTALQACRQLEDDGLIEARPRSGYFVLRPRRPALAPVPEPDIKGALDPAQYVGIHD
FT                   RVSDFIASCQQHPLSADFALAAAPPQAYPMRALQLALTRAARHTPELLTAPVPPYGHPE
FT                   FRAVLARRAMECGISAAPDEVLVTHGCIEALNLALRAVARPGDTIAVESPTYFGLLQIL
FT                   ESLGLRALEIPTSPQRGISIEALELALQTHANVRAVVVVPNFQNPLSCVMDDSDKARLV
FT                   TLCERTGIALIEDDTYGALGDHGTPLALKSWDDSGNVIYCASLHKTLAPGMRLGWMLGG
FT                   RWSRRIGMLKFAQSRPNPPLPQAAAADYMGTKAYDRHLARLRQTLRVQREAMAAAVARH
FT                   FPDGTRLSVPTGGMLLWVELPACMPAMRVFEQALRAGIRITPGPMFSNSNRYDHFLRIS
FT                   CGVPYTADIAAAMKRLADIVAAGL"
FT   misc_feature    complement(25925..26836)
FT                   /note="HMMPfam hit to PF00155, Aminotransferase class I and
FT                   II, score 3.4e-07"
FT   misc_feature    complement(27137..27316)
FT                   /note="HMMPfam hit to PF00392, Bacterial regulatory
FT                   proteins, gntR family, score 1.4e-07"
FT   tRNA            27882..27958
FT                   /note="tRNA Met anticodon CAT, Cove score 85.01"
FT   CDS             28048..28446
FT                   /transl_table=11
FT                   /locus_tag="BPP2612"
FT                   /product="hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2567"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7B3"
FT                   /protein_id="CAE37904.1"
FT                   /translation="MPALLMRYHGPPERPCRIQGGDMGTAKYDHPGYLADAGAAGTYHV
FT                   GVWCPHGYPAHVHIGRAGSQDDARLRLRIPDGVFQSMPDDMETLCRRAFGQALAEGLLA
FT                   ASEGDFQEVRLRLDAQPWNGPLAAAQPA"
FT   CDS             complement(28588..29328)
FT                   /transl_table=11
FT                   /locus_tag="BPP2613"
FT                   /product="putative exported endonulease"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2566"
FT                   /db_xref="GOA:Q7W7B2"
FT                   /db_xref="HSSP:1OUP"
FT                   /db_xref="InterPro:IPR007346"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7B2"
FT                   /protein_id="CAE37905.1"
FT                   /translation="MKYAVVLAALLSLPLAAQAELVTRPNAVGHRDFRHAKKVLPRVYQ
FT                   SLERDFYCGCPYQGKRIDLQACGYAPRKQPRRAQQLEWEHVVPAWTLGHQRQCWQQRVN
FT                   GKPGGRKHCGRTDPVFARAEGDLVNLVPSVGEVNGDRQNFRYAVWADRPAPMYGQCETI
FT                   VDFKTRRIQPRKYVRGRIARIQFYMVERYRLKLSREDRRVLCVWAHAYPVDDWERARDQ
FT                   RIRTLQGNGNHYVTDPAAIQRQCG"
FT   misc_feature    complement(29272..29328)
FT                   /note="Signal peptide predicted for BPP2613 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.986 between residues 19 and 20"
FT   CDS             29504..29635
FT                   /transl_table=11
FT                   /gene="ecnA2"
FT                   /locus_tag="BPP2614"
FT                   /product="entericidin A anti-toxin precursor"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2565"
FT                   /db_xref="GOA:Q7W7B1"
FT                   /db_xref="InterPro:IPR012556"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7B1"
FT                   /protein_id="CAE37906.1"
FT                   /translation="MKNKALIVVLLAMAALSAGCNTVAGAGKDIERGGEKIQGAAQK"
FT   misc_feature    29516..29584
FT                   /note="1 probable transmembrane helix predicted for BPP2614
FT                   by TMHMM2.0 at aa 42-64"
FT   misc_feature    29531..29563
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             29707..30195
FT                   /transl_table=11
FT                   /locus_tag="BPP2615"
FT                   /product="putative lipoprotein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2564"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7B0"
FT                   /protein_id="CAE37907.1"
FT                   /translation="MGALMHNPSVALLGAGVDMRRVGLIGALLAAGVLSGCASQGLLSG
FT                   DTPGLSESFIVTADFQAAYRRAGEYVRVCHEQRPHPYGVVYQSSRRLGDRGAPNEVHVF
FT                   KREEPTKILEIIQSQTETPSTARVTVRVLGDGKWDAAEIAAAKASIQSATPVCRQDVG"
FT   misc_feature    29785..29817
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             30197..30607
FT                   /transl_table=11
FT                   /locus_tag="BPP2616"
FT                   /product="putative integral membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2563"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7A9"
FT                   /protein_id="CAE37908.1"
FT                   /translation="MEHGADERTGDSGQGLLAGPLRLLAGLNGLAALMLVAFSLGIVGG
FT                   EVVPPALQAPLALFLAGLAAAMAAMLFGTAARYLRRRKAAGVRGRGHLPAVVLAIALYL
FT                   ASVAAFGAGCWLAVAPADTDYDQLPTVYATRV"
FT   misc_feature    join(30257..30325,30353..30421,30482..30550)
FT                   /note="3 probable transmembrane helices predicted for
FT                   BPP2616 by TMHMM2.0 at aa 21-43, 53-75 and 96-118"
FT   CDS             30689..32008
FT                   /transl_table=11
FT                   /gene="pyrB"
FT                   /locus_tag="BPP2617"
FT                   /product="aspartate transcarbamoylase"
FT                   /EC_number="2.1.3.2"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2562"
FT                   /db_xref="GOA:Q7W7A8"
FT                   /db_xref="HSSP:1GQ3"
FT                   /db_xref="InterPro:IPR006131"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7A8"
FT                   /protein_id="CAE37909.1"
FT                   /translation="MHSFLGPPMSISQQAFLRDAMRRLNLTRDVFAGRIGVKRRALDTW
FT                   LLPEGSQEFRAMPEVVERFVSEIVQNRDLLEKYTQSGQVGPLRDRIAVEGRHQLLSVDQ
FT                   FTRESVEDLFRVADMMQPIARRQKVSRVLEGAVLGNLFFEASTRTRVSFGAAFCRLGGS
FT                   VCDTTGFTFSSMAKGESIYDTSRVMSGYVDAMVIRHPEQGSVAEFAQATNIPVVNGGDG
FT                   PGEHPSQALLDLYTILTEFSRLGKLLDGAHIAMVGDLKYGRTVHSLIKLLALYKGVKFT
FT                   LISPQGLEMPDYIVEQASRNGNVIEQKSTLAEGLAGADVIYATRVQKERFANEEAGEGY
FT                   TADFQVSRAIIDAYCGPDTIVMHPLPRDSRPGSNDLSTDLNHDPRLAIFRQTDNGIPIR
FT                   MAIFAVLLGVEGLVQHSMRDVTWQHPSHIGPDDSVFHGLD"
FT   misc_feature    30974..31411
FT                   /note="HMMPfam hit to PF02729, Aspartate/ornithine
FT                   carbamoyltransferase, carbamoyl-P binding domain, score
FT                   3.2e-48"
FT   misc_feature    31112..31135
FT                   /note="PS00097 Aspartate and ornithine
FT                   carbamoyltransferases signature."
FT   misc_feature    31430..31909
FT                   /note="HMMPfam hit to PF00185, Aspartate/ornithine
FT                   carbamoyltransferase, Asp/Orn binding domain, score
FT                   6.3e-42"
FT   CDS             complement(32048..32947)
FT                   /transl_table=11
FT                   /locus_tag="BPP2618"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2561"
FT                   /db_xref="GOA:Q7W7A7"
FT                   /db_xref="InterPro:IPR007476"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W7A7"
FT                   /protein_id="CAE37910.1"
FT                   /translation="MWFKNLKIYRLSAPWALNGDQLEECLARFAYQGGNNLEMQSLGWI
FT                   SPRENGLLAHTLNGQILLTLRAEKKLLPTTVVNQVAKARAQEIEEQQGYKPGRKQMKEI
FT                   KERVTDELLPKAFSIYRDTRVWIDTVNHWLVIDAAASAKADEVIGLLAKTIDPLPLDNL
FT                   YVEQSPAAAMTGWLAADEAPANFSIDQDTELRASGESRAAIRYVKHSIDVDDVRRHIQS
FT                   GKQCTRLAMTWADRVSFVLTESLDVKRVAPLDVLKENPDAATQNDDEKFDSDMTLMTGE
FT                   VAKLLAELVDSLGGEKRV"
FT   CDS             33101..33319
FT                   /transl_table=11
FT                   /locus_tag="BPP2619"
FT                   /product="Hypothetical protein"
FT                   /note="No significant database matches"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2560"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7A6"
FT                   /protein_id="CAE37911.1"
FT                   /translation="MKPATIVGAVLIVLGAAALVYKGFSYTSEETVLQVGSVKATAQTE
FT                   KDVAIPSWAGIAAIVVGVLIIGVGMRR"
FT   misc_feature    join(33116..33184,33242..33310)
FT                   /note="2 probable transmembrane helices predicted for
FT                   BPP2619 by TMHMM2.0 at aa 25-47 and 67-89"
FT   CDS             complement(33582..34889)
FT                   /transl_table=11
FT                   /locus_tag="BPP2620"
FT                   /product="hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2559"
FT                   /db_xref="GOA:Q7W7A5"
FT                   /db_xref="HSSP:1Q7E"
FT                   /db_xref="InterPro:IPR003673"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7A5"
FT                   /protein_id="CAE37912.1"
FT                   /translation="MHKQCIKCTDARQTKRLCWSEAGCNIVASQPSWRPVAHLSMLAQS
FT                   APAKPLAGLKVLDITHMLAGPYCTWLLWLLGAEVIKVERPGEGDFARAIAPFHGGESLY
FT                   FMSVNRNKRSIAVNLKTEEGKQILRDLIARSDILVENNRAGVMDRLGLGYDDAKALNPG
FT                   LVYASISGYGQTGPYRHKPAFDVIAQAISGMMSITGQEGGPPARVGVSIGDIASGLFAT
FT                   VAILAAIEGRHGSGEGAFIDVSMMDCQMALMENAISRYLNAGDVPERLGSRHPLIAPFQ
FT                   SFETKDFPIAVCVDTEPQWQRFCAALDLEPLLHDPRFQDGPMRALNHSQLEPLLNAVFA
FT                   SGRRDDFIARLEAADVPCSPINSIPEVARDPQVAHRRILVDNEGVKYVGAPFHYNRAPV
FT                   GGETSPPALGADSVSILRELGRSEAQIADLQRTGVL"
FT   misc_feature    complement(33978..34547)
FT                   /note="HMMPfam hit to PF02515, CAIB/BAIF family, score
FT                   8e-75"
FT   CDS             complement(34907..35794)
FT                   /transl_table=11
FT                   /locus_tag="BPP2621"
FT                   /product="LysR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2558"
FT                   /db_xref="GOA:Q7W7A4"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7A4"
FT                   /protein_id="CAE37913.1"
FT                   /translation="MIYRRLPPLIAVRAFDAFSRSGSIRAAADLLAISHTVVSRHIQNL
FT                   EDAVGTRLVKKDGRGLALTREGQRFAAKTRRALDLIADACGELVHGRGDAIHVCCMAGL
FT                   ASRRLLMRLPELESRLDGKELILQPTTARPDFNKDEADAEIIYLTQPFIGDGLRAEMFS
FT                   RPRILAVCSPAFRERFPDIGEPEHLVHLPLLHEQSTDQWEQWLGSVGVAQLPILRGPRL
FT                   WHGHLTMEAAQLGQGIALVSELLANDRIARGDLVEVLPNVSVQMGGYYFVAPEHKWNDP
FT                   AIATVRQWLTEALS"
FT   misc_feature    complement(34913..35530)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF03466, LysR substrate binding
FT                   domain, score 3.9e-15"
FT   misc_feature    complement(35591..35770)
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family, score 2.3e-16"
FT   misc_feature    complement(35636..35728)
FT                   /note="PS00044 Bacterial regulatory proteins, lysR family
FT                   signature."
FT   CDS             36010..37173
FT                   /transl_table=11
FT                   /locus_tag="BPP2622"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2557"
FT                   /db_xref="GOA:Q7W7A3"
FT                   /db_xref="InterPro:IPR016038"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7A3"
FT                   /protein_id="CAE37914.1"
FT                   /translation="MSISNRAAIVGLCESPRRHAPEVHPYQIQMECVQGALVDAGLSLA
FT                   DVDGLCVAAGDWAEGGGVNSVTEFAEYAGLRPTWFNSTDVGGCSYIVHAGHAAAAIAAG
FT                   LAEVVVISYAATPRWWPLSTPSFDPFVFPAGPGQYELPYGPTLISAYGLYAQRHMARYG
FT                   TTAEQLASVAVTFRTHAAANPHARLRTPITVDDVLASPMIASPLHKLDCCVVTDGGGAV
FT                   VMTSAERARDLRHKPVLLSGFGAATARTQLSQIAPDLSTLATLSGPRAFAMAGLSPADI
FT                   DVAQLYDAFTITPLLALEDLGFCKRGESGAFAADGQLTLGGALPCNTDGGGLSSNHPGK
FT                   RGIFALIEGARQLRGQGPGVQVPDAGRALVHGLGGTFCAAATAILTV"
FT   misc_feature    36700..37158
FT                   /note="HMMPfam hit to PF02803, Thiolase, C-terminal domain,
FT                   score 0.04"
FT   CDS             37181..37573
FT                   /transl_table=11
FT                   /locus_tag="BPP2623"
FT                   /product="hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2556"
FT                   /db_xref="InterPro:IPR002878"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7A2"
FT                   /protein_id="CAE37915.1"
FT                   /translation="MFDVTMPPVQDVCSQPFWEAACQQRLLVQQCPTTGRHQWYPRAHS
FT                   LADPGAAPRWVQASGRARLFSYTVIHKGGVQKAPYTCVLVELEEGPLMLTRCPSERPLQ
FT                   VDMPMRVAFEKIGDTLTLPVFVPMES"
FT   CDS             37574..38017
FT                   /transl_table=11
FT                   /locus_tag="BPP2624"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2555"
FT                   /db_xref="GOA:Q7W7A1"
FT                   /db_xref="InterPro:IPR002539"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7A1"
FT                   /protein_id="CAE37916.1"
FT                   /translation="MPVEFERIQLGERHVSSRIKITESHIVTFAGLTGDFNPLHMDEVA
FT                   ARENGYGQRIAHGMLGHAVSTGLRSGIDDWDIVAFLETRRRFVAPILAGDSVRYEAEVL
FT                   ELRPSRSKPFGVVKVSMQLRNQDGVTVQDGEDVFAVAMRGGVA"
FT   misc_feature    37592..37948
FT                   /note="HMMPfam hit to PF01575, MaoC like domain, score
FT                   3e-16"
FT   CDS             38018..38764
FT                   /transl_table=11
FT                   /gene="fabG"
FT                   /locus_tag="BPP2625"
FT                   /product="probable 3-oxoacyl-[acyl-carrier protein]
FT                   reductase"
FT                   /EC_number="1.1.1.100"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2554"
FT                   /db_xref="GOA:Q7W7A0"
FT                   /db_xref="HSSP:1FJH"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W7A0"
FT                   /protein_id="CAE37917.1"
FT                   /translation="MKNERLQGRVALVTGGAGGIGLAVCRRLQAEGARIVVGDIGEERV
FT                   LAAAASLGEGALGVFLDVADRQSWAAAKRAVDAQGWQVDIVVNVAGIVRDRSLAKMSDA
FT                   EWSAVIDVNLRGTWLGCQSAFAWIGERGWGRIINVASTAIFGAYGQANYSAAKAGIVGL
FT                   TRTAALEGAKRGILVNAVAPGIVETAILADVPDQVREGWLARMPLKRTARPEEIAAVIA
FT                   FLASDDASYMTGQTLVVDGGATTGDY"
FT   misc_feature    38036..38746
FT                   /note="HMMPfam hit to PF00106, short chain dehydrogenase,
FT                   score 6.2e-75"
FT   misc_feature    38435..38521
FT                   /note="PS00061 Short-chain dehydrogenases/reductases family
FT                   signature."
FT   CDS             join(38802..39263,39267..39839)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP2626"
FT                   /product="putative exported protein (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2553"
FT                   /db_xref="PSEUDO:CAE37918.1"
FT   misc_feature    38802..38891
FT                   /note="Signal peptide predicted for BPP2626 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.999) with cleavage site
FT                   probability 0.997 between residues 30 and 31"
FT   misc_feature    join(38946..39263,39267..39836)
FT                   /note="HMMPfam hit to PF01547, Bacterial extracellular
FT                   solute-binding protein, score 0.017"
FT   CDS             40051..41619
FT                   /transl_table=11
FT                   /locus_tag="BPP2627"
FT                   /product="ABC transport protein, solute-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2552"
FT                   /db_xref="GOA:Q7W799"
FT                   /db_xref="InterPro:IPR000515"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W799"
FT                   /protein_id="CAE37919.1"
FT                   /translation="MNYLRIFTTPNLIEPMLNSLVLAGSTAVIATALGVPMAWLVSRTD
FT                   MPGRGLVRVLVLAAFITPSFIGALGWILLAAPNSGWLNVWLRQWLGGDSPLNIYSMWGA
FT                   VFVCAVYTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVMPAIVAGFI
FT                   LSFIQGMTLFGVPAFLLTPARVPVVTTKLAEFYQMFPPELNLAAAYCMPLLLMTGGLFF
FT                   LRRRILGRRQYVMIGGKARGSRLVGLGRWRWPALLGALLVPAVTVFLPYASLTLVSLSK
FT                   AWGQGPSWDNLTLHWYRWAVLDNPQTQSAIVNSLLYATMAATVCLLLGVVVAYMVERKL
FT                   FRGAWALGATASVPIIIPGIVLSVGFFSAFTQPFYGLYGTGALLVLAFVATFLPIAYSH
FT                   GGAIIKTISPDLERASRILGAGQVGTFGRITLPLMKPGLVSGWMLVFIPVMRELSVAVF
FT                   LITPQTNVMTTLIYNYKDGGNYEAVCATSNVLLLGTILIVMLGRLLTGLARRRGAAPVT
FT                   AGVTS"
FT   misc_feature    40051..40152
FT                   /note="Signal peptide predicted for BPP2627 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.885) with cleavage site
FT                   probability 0.323 between residues 34 and 35"
FT   misc_feature    join(40108..40176,40210..40278,40342..40410,40501..40569,
FT                   40663..40719,40807..40875,40990..41058,41077..41145,
FT                   41173..41241,41362..41430,41494..41562)
FT                   /note="11 probable transmembrane helices predicted for
FT                   BPP2627 by TMHMM2.0 at aa 20-42, 54-76, 98-120, 151-173,
FT                   205-223, 253-275, 314-336, 343-365, 375-397, 438-460 and
FT                   482-504"
FT   misc_feature    40417..40647
FT                   /note="HMMPfam hit to PF00528, Binding-protein-dependent
FT                   transport systems inner membrane component, score 2.8e-07"
FT   misc_feature    41257..41478
FT                   /note="HMMPfam hit to PF00528, Binding-protein-dependent
FT                   transport systems inner membrane component, score 6.1e-12"
FT   misc_feature    41260..41346
FT                   /note="PS00402 Binding-protein-dependent transport systems
FT                   inner membrane comp. sign."
FT   CDS             41616..42680
FT                   /transl_table=11
FT                   /locus_tag="BPP2628"
FT                   /product="ABC transport protein, ATP-binding component"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2551"
FT                   /db_xref="GOA:Q7W798"
FT                   /db_xref="HSSP:1G29"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W798"
FT                   /protein_id="CAE37920.1"
FT                   /translation="MKAIRIQGLTKHYGAHQVLRGIDLELAQGELLALLGPSGCGKSTT
FT                   LQMLAGFDQPTDGQIWIGDRQVSGAGVMVPPERRNISLVFQNYAVWPHMTVFENVAYGL
FT                   QVRKVARTELAQRVKRALDTVRLTALAQRYPSELSGGQQQRVALARALVVEPDILLLDE
FT                   PLSNLDAHLREEMRYEIRQVHDLLGLTTVYVTHDQGEALVTADKIAVMQSGQVQQFDSP
FT                   VNVFSRPANTFVASFIGTNNELHGQLAEPGALRVGDRVLHGDDRRQAGAGGAACLCIRP
FT                   SAVKLGAAPGANTLSGTVTRVAYLGEYRDVQVELAAGQFVRAYVDPSSTLEPGQRVEVH
FT                   LPIEHCQILSVTTS"
FT   misc_feature    41700..42257
FT                   /note="HMMPfam hit to PF00005, ABC transporter, score
FT                   3.7e-60"
FT   misc_feature    41721..41744
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    42027..42071
FT                   /note="PS00211 ABC transporters family signature."
FT   misc_feature    42480..42659
FT                   /note="HMMPfam hit to PF03459, TOBE domain, score 1.3e-08"
FT   CDS             42690..43484
FT                   /transl_table=11
FT                   /locus_tag="BPP2629"
FT                   /product="putative enoyl-CoA hydratase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2550"
FT                   /db_xref="GOA:Q7W797"
FT                   /db_xref="InterPro:IPR001753"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W797"
FT                   /protein_id="CAE37921.1"
FT                   /translation="MSSHTSMVHSEIREGALWILFDRPAARNAMTAEMEHAILALCESV
FT                   AHRPEIKAVVFSGAPASKPAFMAGADFGALETATTAEEFVALERSSEALLEAIEGMRVP
FT                   TIAAMAGACVGGGALLALCCDIRIATPSLKFGFPIARTVGNCLSVKNYARLAENLGAQR
FT                   VRDMVFSASLLSADALLHAGTIREIVPEDALHGRAQAIAAQVMALAPLTLWATRTSLLR
FT                   LRDKAVDGIADDDILSACYMSADFQEGVRAFMEKRAPAWIGA"
FT   misc_feature    42738..43259
FT                   /note="HMMPfam hit to PF00378, Enoyl-CoA
FT                   hydratase/isomerase family, score 2.9e-17"
FT   misc_feature    43005..43067
FT                   /note="PS00166 Enoyl-CoA hydratase/isomerase signature."
FT   CDS             complement(43653..45329)
FT                   /transl_table=11
FT                   /locus_tag="BPP2630"
FT                   /product="putative sugar transport protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2549"
FT                   /db_xref="GOA:Q7W796"
FT                   /db_xref="InterPro:IPR005828"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W796"
FT                   /protein_id="CAE37922.1"
FT                   /translation="MSTATLSGQSPSAQRRPMTREERRVIFASSLGTVFEWYDFYLYGS
FT                   LAAIIAQHFFSGVNPTAAFIFALLAFAAGFAVRPFGALVFGRLGDLVGRKYTFLITIVI
FT                   MGLSTFLVGVLPSYASIGIAAPAILIILRLLQGLALGGEYGGAATYVAEHAPHGRRGFY
FT                   TSWIQTTATLGLFLSLLVILGVRTFMGEEAFKDWGWRIPFLISVVLLGISVWIRLQLNE
FT                   SPTFKRMKEEGKGSKAPIAESFGQWRNLKVVILALLGLTAGQAVVWYTGQFYALFFLTQ
FT                   SLKIDSNTANIMIAIALLVGTPFFVLFGALSDRIGRKPIIMAGCLIAALTYFPIFKGLT
FT                   HYANPALEKAQATAPVTVIADPATCSFQFNPVGTASFTSSCDVVKSFMARNSVNYENQS
FT                   AAAGSVAKVMIGNDEFASFDGKGLAPAEFKTKATELDKALTAAIRSHGYPAKADPAQTN
FT                   YFMVVVLLTLLVIYVTMVYGPIAAMLVEMFPTRIRYTSMSLPYHIGNGWFGGFLPPVAF
FT                   AVVAATGNIYDGLWYPIIIAVMTLVIGTLFVRETKDNDINA"
FT   misc_feature    complement(join(43686..43742,43758..43823,43887..43952,
FT                   44322..44372,44394..44459,44505..44570,44667..44732,
FT                   44778..44843,44907..44972,44985..45041,45078..45143,
FT                   45189..45254))
FT                   /note="12 probable transmembrane helices predicted for
FT                   BPP2630 by TMHMM2.0 at aa 25-47, 62-84, 96-115, 119-141,
FT                   162-184, 199-221, 253-275, 290-312, 319-336, 459-481,
FT                   502-524 and 529-548"
FT   misc_feature    complement(44004..45260)
FT                   /note="HMMPfam hit to PF00083, Sugar (and other)
FT                   transporter, score 3.8e-30"
FT   misc_feature    complement(44850..44927)
FT                   /note="PS00217 Sugar transport proteins signature 2."
FT   CDS             complement(45524..46882)
FT                   /transl_table=11
FT                   /locus_tag="BPP2631"
FT                   /product="two-component system histidine kinase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2548"
FT                   /db_xref="GOA:Q7W795"
FT                   /db_xref="HSSP:1ID0"
FT                   /db_xref="InterPro:IPR003594"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W795"
FT                   /protein_id="CAE37923.1"
FT                   /translation="MLAPLFLLWPMSVAITYVVAQNIANVPYDRALANNLNVLSHQVHA
FT                   VDGRAALRMTDAARDVLRVDETESVFWLALGSRGEYLGGDRALPLPPNVGQPRPGEILY
FT                   ADDTLRGFGVRLAYTWIDLGLPDTQPALVMVAETVEKRAQLANDIIKGVIIPQFVVLPI
FT                   AVLLVWFGLSRGVAPLNALQQRLRARRPDDLSPIDEQAAPSEIAPLVGAMNDLLDRLSA
FT                   NIETQRRFVADAAHQLKTPLAGLRTQAELALRDASPEEMQSSLRQLVTGSERATRLVNQ
FT                   LLLLARAENPDSPGQALTDLNAIAYEQTMQWVPQALALSTDLGFEGADRPVGISGNAIL
FT                   LAELLNNLIDNALRYTPRGGHITVRVSAQGDHAVLDVEDSGPGIAPEERERVFDRFYRV
FT                   LGTASDGSGLGLAIVREIAQKHQAEVVIDEHPTPYSDLPGTRIQVRFPLPGTL"
FT   misc_feature    complement(45536..45877)
FT                   /note="HMMPfam hit to PF02518, Histidine kinase-, DNA
FT                   gyrase B-, and HSP90-like ATPase, score 1.4e-37"
FT   misc_feature    complement(46010..46207)
FT                   /note="HMMPfam hit to PF00512, His Kinase A
FT                   (phosphoacceptor) domain, score 2.6e-18"
FT   misc_feature    complement(46217..46423)
FT                   /note="HMMPfam hit to PF00672, HAMP domain, score 6.6e-09"
FT   misc_feature    complement(join(46370..46435,46826..46882))
FT                   /note="2 probable transmembrane helices predicted for
FT                   BPP2631 by TMHMM2.0 at aa 43-65 and 195-217"
FT   CDS             complement(46998..47687)
FT                   /transl_table=11
FT                   /locus_tag="BPP2632"
FT                   /product="two-component response regulatory protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2547"
FT                   /db_xref="GOA:Q7W794"
FT                   /db_xref="HSSP:1KGS"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W794"
FT                   /protein_id="CAE37924.1"
FT                   /translation="MRILIAEDDSILTDGLSRSLRHNGYAVDAVRDGLAADSALAVQPF
FT                   DLLILDLGLPHLPGLEVLRRLRARNSVLPVLILTAADSIEQRVKGLDLGADDYMAKPFA
FT                   LSELEARVRALTRRGAGGGATIVRHGRLVFDQTGRIATVDDQTLDLSAREVSLLEILLA
FT                   RSGRMVSKTQLVDHLCEWGEAVSTNAIEVYVHRLRKKLEPSGVKIITVRGLGYCLERDQ
FT                   GASYLAS"
FT   misc_feature    complement(47043..47252)
FT                   /note="HMMPfam hit to PF00486, Transcriptional regulatory
FT                   protein, C terminal, score 4.9e-20"
FT   misc_feature    complement(47328..47687)
FT                   /note="HMMPfam hit to PF00072, Response regulator receiver
FT                   domain, score 6.8e-36"
FT   CDS             47927..48988
FT                   /transl_table=11
FT                   /gene="recA"
FT                   /locus_tag="BPP2633"
FT                   /product="RecA protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2546"
FT                   /db_xref="GOA:P0A450"
FT                   /db_xref="HSSP:2REB"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/Swiss-Prot:P0A450"
FT                   /protein_id="CAE37925.1"
FT                   /translation="MDDKTSKAAAAEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDI
FT                   QVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGKTTLTLQVIAEMQKLGGTCAFVDAE
FT                   HALDVQYASKLGVNLTDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPKAEI
FT                   EGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNA
FT                   LKFYSSVRLDIRRIGAIKKGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGSGISREGE
FT                   IIDLGVQANVVDKSGAWYSYSGNRIGQGKDNVREYLKEHKEMAIEIENKVRENQGIVSR
FT                   AATFPASEAEDGE"
FT   misc_feature    47969..48937
FT                   /note="HMMPfam hit to PF00154, recA bacterial DNA
FT                   recombination protein, score 3.3e-245"
FT   misc_feature    48146..48169
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    48590..48616
FT                   /note="PS00321 recA signature."
FT   CDS             49021..49587
FT                   /transl_table=11
FT                   /locus_tag="BPP2634"
FT                   /product="RecX-family regulatory protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2545"
FT                   /db_xref="GOA:Q7W793"
FT                   /db_xref="InterPro:IPR003783"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W793"
FT                   /protein_id="CAE37926.1"
FT                   /translation="MATFNRRPPSAARAGRRTANPDDEFETLAQSRDDAAAPSRPGRTL
FT                   KARAVGYLSRREYSRLELARKLQPYAEEGDDIEAVLDDLQREGWLSNARFAQSLAHRRA
FT                   PRQGASRIVQELKQQGVADDQVAELREQLRVTEYARALAVWQKRFGEKPADRAAYARQA
FT                   RFLAGRGFAHDVIRRILGGGDDELD"
FT   misc_feature    49219..49578
FT                   /note="HMMPfam hit to PF02631, RecX family, score 0.00028"
FT   CDS             complement(49662..50591)
FT                   /transl_table=11
FT                   /gene="metR"
FT                   /locus_tag="BPP2635"
FT                   /product="transcriptional regulatory protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2544"
FT                   /db_xref="GOA:Q7W792"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W792"
FT                   /protein_id="CAE37927.1"
FT                   /translation="MLEIRHLETLAAIRDGGSLQEAAERLHLTQSALSHQLRDLETRLG
FT                   TPLLNRRTRPARLTTAGLRVLALADDVLPRLRATERELQRLAAGRTGRLHLAIECHSCF
FT                   QWLMPALDAFRGQWPDVALDLSAAFSFAPLPALVRGDLDLVITSDPQALEAVTYLPLFK
FT                   YELVLAVAESNPLAANRHVMPEQLADQTLITYPVDRQRLDIFTGFLDPADIEPAAIRRA
FT                   ELTPIIAQLVASNRGVAALPNWALTEYLGQGWLRVCHLGPQGVWPTLYAAVRTEDSDSS
FT                   YIDEFLTIARDVCFKTLSGIKAAKGLPA"
FT   misc_feature    complement(49707..50333)
FT                   /note="HMMPfam hit to PF03466, LysR substrate binding
FT                   domain, score 2.4e-37"
FT   misc_feature    complement(50403..50582)
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family, score 1.4e-20"
FT   misc_feature    complement(50448..50540)
FT                   /note="PS00044 Bacterial regulatory proteins, lysR family
FT                   signature."
FT   CDS             50732..53047
FT                   /transl_table=11
FT                   /gene="metE"
FT                   /locus_tag="BPP2636"
FT                   /product="5-methyltetrahydropteroyltriglutamate--homocyst
FT                   eine methyltransferase"
FT                   /EC_number="2.1.1.14"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2543"
FT                   /db_xref="GOA:Q7W791"
FT                   /db_xref="InterPro:IPR006276"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W791"
FT                   /protein_id="CAE37928.1"
FT                   /translation="MRKAGIVMTIIHNLGFPRIGAQRELKRAVEAYWAGRQTAEALHET
FT                   GRALRAAHWQRQADAGVAFVPVGDFAWYDHILEWTTLLGAVPARFGHPEGKPVDLDTLF
FT                   RMGRGRAPSGKPAAACEMTKWFDTNYHYIVPELTPGQTFRVAREDLFEQVKEAQALGHR
FT                   VKPVIPGPLTWLWLGKGDAFAQGAGDIGKLQLLDALLPVYGEVLERLAGLGVEWVQIDE
FT                   PALVLDLPQAWRDAYQAVYAKLAASPVKLLLATYFDGLKDNLATALALPVAGLHVDLVR
FT                   APDQLSDVASGLRPGQVLSAGVINGRNIWRTDLDAALAMLAPVREQLQERLWLAPSCSL
FT                   LHVPVDLAGETELDAELLGWLSFAVQKLDELCLLGKALGGDADPAVQQGLAAQRAALQA
FT                   RRQSPRIHNPAVAQRMAGQAGVSRERAPFGQRIARQQSELRLPAFPTTTIGSFPQTAEI
FT                   RALRRDWKSGALTDSAYENAIRKEIEEVIRFQEKVGLDVLVHGEPERNDMVEYFGELLA
FT                   GFAFTKNGWVQSYGSRCVKPPIIFGDVARPAPMTVGWSAYAQSLTDKPVKGMLTGPVTI
FT                   LQWSFVRDDQPREATCRQLALALRDEVVDLEAAGIRVIQIDEPAIREGLPLRRADWRAY
FT                   LDWAVDCFRLSTAGVGEATQIHTHMCYSEFNDIIESIAAMDADVITIETSRSNMELLKA
FT                   FEDFHYPNDIGPGVYDIHSPNVPEVDWMVELMRKAAARLPKERLWVNPDCGLKTRAWPE
FT                   TEAALIGMVQAARTLRAA"
FT   misc_feature    52061..53032
FT                   /note="HMMPfam hit to PF01717, Methionine synthase,
FT                   vitamin-B12 independent, score 9.4e-218"
FT   CDS             53252..53866
FT                   /transl_table=11
FT                   /locus_tag="BPP2637"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2542"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W790"
FT                   /protein_id="CAE37929.1"
FT                   /translation="MPLPPPDTPRQPLHTRSIRVQSYGREDGLWDLEAELIDYKGYDFP
FT                   KRDGQLFKVGEFIHHMHLRITIDEAYTIIAAQAVYDAAPYDGVCTNIEQAYRDLVGMNL
FT                   LKGFRRQVKERFGHVAGCTHMTELSQVLPTAAVQSMAGRRRQNSNPDKRPFQLGGCHAL
FT                   RTDGPVVQEHYPKWYTGANAGSSADTSSDSPSLSYVLTGIT"
FT   CDS             53863..55023
FT                   /transl_table=11
FT                   /gene="sucC"
FT                   /locus_tag="BPP2638"
FT                   /product="Succinyl-CoA synthetase, beta chain"
FT                   /EC_number="6.2.1.5"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2541"
FT                   /db_xref="GOA:Q7W789"
FT                   /db_xref="HSSP:1JKJ"
FT                   /db_xref="InterPro:IPR005809"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W789"
FT                   /protein_id="CAE37930.1"
FT                   /translation="MKIHEYQGKELLKQFGVTVPRGIPAFSVDEAVAAAEKLGGPVWVV
FT                   KAQIHAGGRGKGGGVKLGRSIDEVRQLSSEILGMQLVTHQTGPQGQKVRRLLIEEGADI
FT                   KKEYYVGIVTDRGTQRVCVMASSEGGMDIEEVAAHSPEKILKVFVDPAAGLTDAEAAEL
FT                   ARGIGVPEASVGKAAAEFQKLYKAYWDTDASLAEINPLILTGSGDIIALDAKFNFDSNA
FT                   LFRHPEIVAYRDLDEEDPAEIEASKFDLAYIQLDGNIGCLVNGAGLAMATMDTIKLFGG
FT                   EPANFLDVGGGATAEKVTEAFKIMLKNKSVKAILVNIFGGIMRCDVIAEGVITACKAVN
FT                   LNVPLVVRMKGTNEELGKKMLAESGLPIISADTMAEAATKVVAAVK"
FT   misc_feature    53947..54456
FT                   /note="HMMPfam hit to PF02222, ATP-grasp domain, score
FT                   2.7e-42"
FT   misc_feature    54598..55017
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF00549, CoA-ligase, score 5.2e-71"
FT   misc_feature    54631..54705
FT                   /note="PS01217 ATP-citrate lyase / succinyl-CoA ligases
FT                   family signature 3."
FT   CDS             55043..55924
FT                   /transl_table=11
FT                   /gene="sucD"
FT                   /locus_tag="BPP2639"
FT                   /product="succinyl-CoA synthetase, alpha chain"
FT                   /EC_number="6.2.1.5"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2540"
FT                   /db_xref="GOA:Q7W788"
FT                   /db_xref="HSSP:1JKJ"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W788"
FT                   /protein_id="CAE37931.1"
FT                   /translation="MSILINKDTKVITQGITGKTGQFHTRMCREYANGKAAFVAGVNPK
FT                   KAGEDFEGVPIYANVKDAKADTGATVSVIYVPPAGAAAAIWEAVEAELDLVICITEGIP
FT                   VRDMLEVKNRMQAMNSKTLLLGPNCPGLITPDEIKIGIMPGHIHRKGRIGIVSRSGTLT
FT                   YEAVAQVTELGLGQSSAVGIGGDPINGLKHVDVLKLFNDDPDTDAVIMIGEIGGPDEVN
FT                   AAQWAKDNMKKPVVGFIAGVTAPAGKRMGHAGALISGGADTADAKLEVMEACGIRTTRN
FT                   PSEMGKLLKSVL"
FT   misc_feature    55052..55396
FT                   /note="HMMPfam hit to PF02629, CoA binding domain, score
FT                   2e-52"
FT   misc_feature    55454..55897
FT                   /note="HMMPfam hit to PF00549, CoA-ligase, score 1.8e-40"
FT   misc_feature    55511..55600
FT                   /note="PS01216 ATP-citrate lyase / succinyl-CoA ligases
FT                   family signature 1."
FT   misc_feature    55763..55804
FT                   /note="PS00399 ATP-citrate lyase / succinyl-CoA ligases
FT                   family active site."
FT   CDS             56200..56895
FT                   /transl_table=11
FT                   /locus_tag="BPP2640"
FT                   /product="integral membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2539"
FT                   /db_xref="GOA:Q7W787"
FT                   /db_xref="InterPro:IPR005496"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W787"
FT                   /protein_id="CAE37932.1"
FT                   /translation="MELSSAAFWIALLQIIWVNILLSGDNAVVIALAARSLPPDQQKKA
FT                   IVVGSAAAIVMRIVLTLVAAKLLLLPWLKLIGAALLVYIGVSLLLPEGEDDGAEKGHGS
FT                   LLVAIRTIMIADLVMSLDNVVAVAAAAMGDTTLLVLGLAISIPLVIFGSALLLKVIERF
FT                   PIIVWVGAALLGFIAGELLVGDPALEESVARIDTMLGVTQHDFALMVGAIGAILVLALG
FT                   KIFQARQRA"
FT   misc_feature    join(56227..56295,56332..56391,56401..56469,56506..56574,
FT                   56602..56670,56689..56748,56815..56874)
FT                   /note="7 probable transmembrane helices predicted for
FT                   BPP2640 by TMHMM2.0 at aa 10-32, 45-64, 68-90, 103-125,
FT                   135-157, 164-183 and 206-225"
FT   CDS             56967..57773
FT                   /transl_table=11
FT                   /locus_tag="BPP2641"
FT                   /product="integral membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2538"
FT                   /db_xref="GOA:Q7W786"
FT                   /db_xref="InterPro:IPR005496"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W786"
FT                   /protein_id="CAE37933.1"
FT                   /translation="MAAFCHGEADGGLPGISPVFTNNACWGFQVLEFFQTLSWAAVFQI
FT                   ILIDILLGGDNAVVIALACRNLAPKQRMQGILWGTAGAIILRVVLIAFALTLLNIPFLK
FT                   VVGGLLLVWIGVKLLVPEDEGHDSIKGGTSIVAAVKTIIIADFVMSLDNVIAIAGAAQN
FT                   AHADHQIGLVVFGLVVSVPIIIWGSTLVLKLIDRFPMVVTFGAALLGWIAGGMLITDVF
FT                   VVRQFGEQPSAVKIGVEIAGALLVVLLGRWLASRKTASKESVNESA"
FT   misc_feature    join(57084..57152,57189..57257,57369..57437,57474..57542,
FT                   57570..57638,57672..57731)
FT                   /note="6 probable transmembrane helices predicted for
FT                   BPP2641 by TMHMM2.0 at aa 40-62, 75-97, 135-157, 170-192,
FT                   202-224 and 236-255"
FT   CDS             57892..58836
FT                   /transl_table=11
FT                   /gene="HemC"
FT                   /locus_tag="BPP2642"
FT                   /product="porphobilinogen deaminase"
FT                   /EC_number="4.3.1.8"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2537"
FT                   /db_xref="GOA:Q7W785"
FT                   /db_xref="InterPro:IPR000860"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W785"
FT                   /protein_id="CAE37934.1"
FT                   /translation="MAAVERLTIATRASRLALWQAEHVRDLLRARYPACSVELLTLTTR
FT                   GDQILDRTLSKVGGKGLFVKELETALLDGRADLAVHSLKDVPVDLHAPFELSCVLERAD
FT                   PRDAFVSNDYGSLADLPPGAAVGTSSLRRESQIRARYPHLVVKPLRGNLDTRLGKLDNG
FT                   DYAAIVLAAAGLERLGLAARIRALLEPADSLPAAGQGALGIEILQGRADVRAMLAPLGD
FT                   AATLACVTAERAVSRMLGGSCQVPLAAYARIDGDELALRALVAAPDGRRIVRAERRGPR
FT                   DQAQAIGESAARDLLADGADAILAELLPTSPAP"
FT   misc_feature    57910..58782
FT                   /note="HMMPfam hit to PF01379, Porphobilinogen deaminase,
FT                   score 1.4e-143"
FT   misc_feature    58585..58635
FT                   /note="PS00533 Porphobilinogen deaminase cofactor-binding
FT                   site."
FT   CDS             58833..59657
FT                   /transl_table=11
FT                   /locus_tag="BPP2643"
FT                   /product="putative uroporphyrinogen-III synthase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2536"
FT                   /db_xref="GOA:Q7W784"
FT                   /db_xref="InterPro:IPR003754"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W784"
FT                   /protein_id="CAE37935.1"
FT                   /translation="MTGRSGPRGGLPMSQIAILTRPQGRNGALAQRLHEAGWQTLCLPA
FT                   LRIEPLPPENGAVPLPRDYDLVVFVSGNAARLYLEQLGERGQLPWPAGAVAATVGPASA
FT                   RALLDSGQFGADTTVLHPAETALTHDSEALWALLRARPALPRRALLVRGTQGRDWLADR
FT                   LAAAGVEVSRHAVYRRRPAPWAQEGRQRLRDWARAGERPTWLLTSGEGIDALVQGLREE
FT                   QLLDWWLQGRFVVTHPVLAERLRALAGGGADAPMVKNCMPADEAIFATFVAA"
FT   misc_feature    58902..59594
FT                   /note="HMMPfam hit to PF02602, Uroporphyrinogen-III
FT                   synthase HemD, score 1.1e-05"
FT   CDS             59644..60879
FT                   /transl_table=11
FT                   /locus_tag="BPP2644"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2535"
FT                   /db_xref="InterPro:IPR007470"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W783"
FT                   /protein_id="CAE37936.1"
FT                   /translation="MLRLESSLHAITEYNRVMTDNTSATSPGTVPGTPGTAAADEAVAS
FT                   QSRKGKGVNSTLVTALIIVILLAVGLGWAAWLQRKQFVSAGQEVAARLNTLGAELTQSR
FT                   NDMREALALAQAQSGKVAELEGKVREAQSQYSALQQALQNLNDGASDEMLANDIERLIT
FT                   IASQQLRLAGNVSNAIVALETAQARLARADRPRFASLQQSINGDLDRLRAVGVVDIAAQ
FT                   SARIDRLVALVGRAPLLVPDAAAPGVTAVPQANEAVPASVDPGADLPADAAWWQRWQAE
FT                   IASWPGRAGSALAHELGDLIRVQRVDQPTALLLSPEQAGQLRSTLRQRLLTAQLSMLMR
FT                   QPAVWKSELDAVAATLAQYFDGKAPDTVAALALARELGQVEIAVRVPDVADSLNGIAAL
FT                   RAAGFNADGQQD"
FT   misc_feature    59806..59874
FT                   /note="1 probable transmembrane helix predicted for BPP2644
FT                   by TMHMM2.0 at aa 55-77"
FT   CDS             60883..62478
FT                   /transl_table=11
FT                   /locus_tag="BPP2645"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2534"
FT                   /db_xref="InterPro:IPR010817"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W782"
FT                   /protein_id="CAE37937.1"
FT                   /translation="MRTWFWTLLLAVVAVALAVVLRAHAGNVLLLVWPWRIELSLTLTV
FT                   LLLVAAFVTLYIGLRLLAWLVAIPDRLRAWRGRRAQERDHELLERGWIGLLEGRFAQAE
FT                   KDLSKLFDQTKVRSRRVLAALSGARAAHNLGEYERRDRMLESAREQAGEDAGLQEATAT
FT                   VSADMLLDQGRAQQALDLLEPLQDGGARHLHTMRLLLRAETALQHHERVFMLARGLLRR
FT                   NAIGKAEAEQLIDSAGAARLRAGMAVDQWRPIWKDLKSDERLLPNIALAGAAAFEDAGE
FT                   ASEAARILEAAVAVKFNPALVAAYARCDAAQVPHRLAKAETWLQQRPADTDLLTALGLL
FT                   CLNGQLWGQAERYLQRSVSRRNDPQAHALLGSLYDRLDRPADAARHWRQATAARVALPV
FT                   LAADIALPAADTKADPAWLDAEREYVPNMSEYTAPVIADAPPEVEPGAVDYVLDPDARA
FT                   AGEHEPASAVAPEPVSVPPRTAIDIEDYFDSAPIPAAAIEAPVSSYRAGGDDEQPAKPG
FT                   GAVSSAGPASGDKA"
FT   misc_feature    60883..60957
FT                   /note="Signal peptide predicted for BPP2645 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.991 between residues 25 and 26"
FT   misc_feature    join(60892..60960,61018..61086)
FT                   /note="2 probable transmembrane helices predicted for
FT                   BPP2645 by TMHMM2.0 at aa 4-26 and 46-68"
FT   CDS             62507..63043
FT                   /transl_table=11
FT                   /gene="ppa"
FT                   /locus_tag="BPP2646"
FT                   /product="inorganic pyrophosphatase"
FT                   /EC_number="3.6.1.1"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2533"
FT                   /db_xref="GOA:Q7W781"
FT                   /db_xref="HSSP:1FAJ"
FT                   /db_xref="InterPro:IPR008162"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W781"
FT                   /protein_id="CAE37938.1"
FT                   /translation="MSLDRVAPGKKLPDDFNVIIEIPMNADPVKYEVDKESGAIFVDRF
FT                   MLTAMHYPCNYGYIPQTLSEDGDPADVLVLTPFPIQIGAVVRCRAIGVLEMDDESGGDA
FT                   KLLAVPIEKLYPPYRNIKSYEDLPAEDVSRIQHFFEHYKDLEKGKWVKVKGWKGVDAAH
FT                   EEIVRSAERYAKGQA"
FT   misc_feature    62555..63031
FT                   /note="HMMPfam hit to PF00719, Inorganic pyrophosphatase,
FT                   score 4.2e-60"
FT   CDS             63227..63922
FT                   /transl_table=11
FT                   /locus_tag="BPP2647"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2532"
FT                   /db_xref="GOA:Q7W780"
FT                   /db_xref="HSSP:1GTT"
FT                   /db_xref="InterPro:IPR002529"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W780"
FT                   /protein_id="CAE37939.1"
FT                   /translation="MDYVFPPSPPAAVPVAGGNARFPVRRVYCVGRNYAEHAKEMGFTG
FT                   REDPFFFCKPVDAILSVADGATGEMPYPPKTANLHYEMELVVVLGKGGRDLTVEQADEC
FT                   VWGYALGLDMTRRDLQGEAKKQGRPWEVGKAFDLSAPLGPIHPRSAVGTLDKGAIWLDV
FT                   NGERKQSSDISQMIWNIPESIAYLSGLFELQPGDIIFTGTPEGVGAVVKGDVIVGGVEG
FT                   LGELRVRIA"
FT   misc_feature    63347..63862
FT                   /note="HMMPfam hit to PF01557, Fumarylacetoacetate (FAA)
FT                   hydrolase family, score 1.1e-55"
FT   CDS             63949..64080
FT                   /transl_table=11
FT                   /gene="ecnB"
FT                   /locus_tag="BPP2648"
FT                   /product="entericidin B-like bacteriolytic toxin"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2531"
FT                   /db_xref="GOA:Q7W779"
FT                   /db_xref="InterPro:IPR012556"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W779"
FT                   /protein_id="CAE37940.1"
FT                   /translation="MRSKIVLTAFVVFGFVLQGCNTVAGMGKDMSDAGSAITHAAEK"
FT   misc_feature    63949..64005
FT                   /note="Signal peptide predicted for BPP2648 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.973) with cleavage site
FT                   probability 0.523 between residues 19 and 20"
FT   misc_feature    63961..64029
FT                   /note="1 probable transmembrane helix predicted for BPP2648
FT                   by TMHMM2.0 at aa 5-27"
FT   misc_feature    63976..64008
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   repeat_region   64133..64145
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS1001 element"
FT   repeat_region   64133..65439
FT   CDS             64216..65436
FT                   /transl_table=11
FT                   /locus_tag="BPP2649"
FT                   /product="transposase"
FT                   /note="transposase for IS1001 element"
FT                   /db_xref="GOA:Q7TTN6"
FT                   /db_xref="InterPro:IPR002560"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTN6"
FT                   /protein_id="CAE37941.1"
FT                   /translation="MLDRKLLESLGGWQGYGVERVEWPEDPGRTLSIYLKPTAKVMLCE
FT                   QCGARCRQVHETTVRRVRDLPLFEYRVVLHVPRRRLWCEQCGGPRLERLAWLGRYQRVT
FT                   DRLAQACSQLLQSSNVQAVARFFELGWHTVKTLDKARLRASVREPDWSKIEYLAMDEFA
FT                   LHKGHRYATVVVDPIGRQVLWIGPGRSRETARAFFEQLPPGAAQRIKAVAIDMTTAYEL
FT                   EIQAHSPQAEIVYDLFHVVAKYGREVIDRVRVDQANQLRQDRPARRIIKSSRWLLLRNR
FT                   DNLDRQQAVRLDELLQANQPLLTVYVLRDELKRLWFYQRPAWARQAWNHWYEQAEQSGI
FT                   AALNTFAQRLKGYLHGILARCRHPLNTSIVEGINNTIKVIKRRAYGYRDQEYFFLKIRA
FT                   AFPGNAR"
FT   misc_feature    64306..65295
FT                   /note="HMMPfam hit to PF01610, Transposase, score 7.9e-128"
FT   CDS             complement(65399..66364)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP2650"
FT                   /product="Putative transcriptional regulatory protein
FT                   (pseudogene)"
FT                   /note="Similar to the C-terminal region of Ralstonia
FT                   solanacearum probable sigma-54 interacting response
FT                   regulator transcription regulator protein RSP1667 or
FT                   RS02226 SWALL:Q8XPH3 (EMBL:AL646086) (491 aa) fasta scores:
FT                   E(): 8.4e-57, 55.85% id in 299 aa, and of Escherichia coli
FT                   transcriptional regulatory protein ZraR or HydG or B4004
FT                   SWALL:ZRAR_ECOLI (SWALL:P14375) (441 aa) fasta scores: E():
FT                   1.9e-38, 44.51% id in 301 aa. Also similar to the
FT                   C-terminal region of downstream CDS BPP2651 (469 aa) fasta
FT                   scores: E(): 3.1e-49, 51.803% identity in 305 aa overlap"
FT                   /db_xref="PSEUDO:CAE37942.1"
FT   repeat_region   complement(65427..65439)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS1001 element"
FT   misc_feature    complement(65474..65596)
FT                   /note="HMMPfam hit to PF02954, Bacterial regulatory
FT                   protein, Fis family, score 2.5e-08"
FT   misc_feature    complement(65723..66364)
FT                   /note="HMMPfam hit to PF00158, Sigma-54 interaction domain,
FT                   score 3.5e-101"
FT   misc_feature    complement(66080..66127)
FT                   /note="PS00676 Sigma-54 interaction domain ATP-binding
FT                   region B signature."
FT   misc_feature    complement(66272..66313)
FT                   /note="PS00675 Sigma-54 interaction domain ATP-binding
FT                   region A signature."
FT   CDS             66666..68072
FT                   /transl_table=11
FT                   /gene="zraR"
FT                   /gene_synonym="hydG"
FT                   /locus_tag="BPP2651"
FT                   /product="Putative transcriptional regulatory protein"
FT                   /note="Similar to Ralstonia solanacearum probable sigma-54
FT                   interacting response regulator transcription regulator
FT                   protein RSP1667 or RSrs02226 SWALL:Q8XPH3 (EMBL:AL646086)
FT                   (491 aa) fasta scores: E(): 2.7e-100, 58.83% id in 464 aa,
FT                   and to Escherichia coli transcriptional regulatory protein
FT                   ZraR or HydG or B4004 SWALL:ZRAR_ECOLI (SWALL:P14375) (441
FT                   aa) fasta scores: E(): 2.7e-58, 42.82% id in 439 aa. Also
FT                   similar in its C-terminal region to upstream CDS BPP2650
FT                   (322 aa) fasta scores: E(): 5.1e-49, 51.803% identity in
FT                   305 aa overlap"
FT                   /db_xref="GOA:Q7W778"
FT                   /db_xref="HSSP:1F51"
FT                   /db_xref="InterPro:IPR020441"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W778"
FT                   /protein_id="CAE37943.1"
FT                   /translation="MHCGGTMPHLLIVDDDDAVRDNLVEIGREHGYTVAQAGTVRDALI
FT                   QVERQLPDLVLTDVRLPGATGMDLFSRISHAGVEVVVITGYGSMENAIEALRAGATDYL
FT                   VKPICMERLEQILARVASAGQDGDWDPSQPFQQEDRFGRLVGASAPMQALYRQISRVAP
FT                   TEVTTLLIGESGTGKELAAHAVHELSARRAGPFVAVNCGAISPNLIESELFGHERGSFT
FT                   GAERQHKGYFERADNGTLFLDEVTEMPLDLQVKLLRVLETGAFMRVGTNREISCSVRVV
FT                   AATNRSPEQAVRDGRLREDLYYRLSVFPIELPPLRERGDDLAMLAGRFLDGLNREYGKD
FT                   KRFAPQALQTMAEYAWPGNVRELKNFVRRAFILAESDTLDASALTPQISPSDAAGGGQV
FT                   IVPVGSTLAEADRRLILATLQRCGGVKKQTAAMLGISAKTLYNRLEEYGEAGPPDAAPG
FT                   AEGAASRAQH"
FT   misc_feature    66687..67040
FT                   /note="HMMPfam hit to PF00072, Response regulator receiver
FT                   domain, score 2.3e-28"
FT   misc_feature    67095..67757
FT                   /note="HMMPfam hit to PF00158, Sigma-54 interaction domain,
FT                   score 3.7e-126"
FT   misc_feature    67353..67400
FT                   /note="PS00676 Sigma-54 interaction domain ATP-binding
FT                   region B signature."
FT   misc_feature    67731..67760
FT                   /note="PS00688 Sigma-54 interaction domain C-terminal part
FT                   signature."
FT   misc_feature    67884..68006
FT                   /note="HMMPfam hit to PF02954, Bacterial regulatory
FT                   protein, Fis family, score 2e-13"
FT   CDS             68148..69914
FT                   /transl_table=11
FT                   /locus_tag="BPP2652"
FT                   /product="Putative pyruvate dehyrdogenase"
FT                   /note="Similar to Streptomyces coelicolor putative pyruvate
FT                   dehydrogenase SCO7412 or SC6D11.08 SWALL:Q9L147
FT                   (EMBL:AL158061) (600 aa) fasta scores: E(): 2.9e-123,
FT                   55.51% id in 589 aa, and to Lactobacillus plantarum
FT                   pyruvate oxidase SWALL:POXB_LACPL (SWALL:P37063) (603 aa)
FT                   fasta scores: E(): 5.4e-39, 29.52% id in 552 aa"
FT                   /db_xref="GOA:Q7W777"
FT                   /db_xref="HSSP:1OZH"
FT                   /db_xref="InterPro:IPR012000"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W777"
FT                   /protein_id="CAE37944.1"
FT                   /translation="METVSDFVLERLAQWGIRRIFGYPGDGINGLMGAFGRTRQPLEFV
FT                   QARHEEMAAFMACAHAKFTGQVGVCMATSGPGAIHLLNGLYDAKLDHQPVLALVGQQAR
FT                   RALGGDFQQEVDLVSLFKDVAHDFVQQAASAEQARHLIDRALRIALERRCVTCVILPND
FT                   VQDLPAVRELPREHGSVPTGIGVTSHAAVPPDTALRNAADILNRGERIAILAGAGALEA
FT                   AEPLQAVAERLGAGVAKALLGKAALPDALPYVTGAIGLLGTQPSWEMMNECDTLLMVGT
FT                   AFPYSEFLPSEGQARAVQIDRDGRNLNLRYPVEVGLAGDSRQTLQALLPLLEPKPQVRW
FT                   RERIEASVARWWRTVEARAMVDASPVNPQRVFWELSQRLPDRSIVTADSGSAANWYARD
FT                   VKLREGMMASLSGGLATMGCAVPYALAAKLAYPERPVVALAGDGAMQMNGINELITIAD
FT                   RWRAWADPTLVVLVLNNGDLNLVTWEQRVMGGDPRFEDSQRLPPFAYADYTRMLGLHGL
FT                   RVERAQDLGAAWGEALTAGRPAVLEVLTDPEMPPLPPHIRARQVRAYVQALRADPAGGA
FT                   ALRATLKQWWAG"
FT   misc_feature    68148..68666
FT                   /note="HMMPfam hit to PF02776, Thiamine pyrophosphate
FT                   enzyme, N-terminal TPP binding domain, score 3.4e-45"
FT   misc_feature    68727..69179
FT                   /note="HMMPfam hit to PF00205, Thiamine pyrophosphate
FT                   enzyme, central domain, score 3.8e-16"
FT   misc_feature    69231..69776
FT                   /note="HMMPfam hit to PF02775, Thiamine pyrophosphate
FT                   enzyme, C-terminal TPP binding domain, score 5.1e-28"
FT   misc_feature    69420..69479
FT                   /note="PS00187 Thiamine pyrophosphate enzymes signature."
FT   CDS             69963..70196
FT                   /transl_table=11
FT                   /locus_tag="BPP2653"
FT                   /product="Hypothetical protein"
FT                   /note="No significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W776"
FT                   /protein_id="CAE37945.1"
FT                   /translation="MKASNDTPSSKPSAPRRDEAPAARKPRPGEEQADGSPGEAGAISN
FT                   PMPGLSPQRTPGIDRWSENDFEAVWRRATREL"
FT   CDS             70302..70646
FT                   /transl_table=11
FT                   /locus_tag="BPP2654"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Ralstonia solanacearum probable
FT                   transmembrane protein RSC0753 or RS05100 SWALL:Q8Y1D7
FT                   (EMBL:AL646060) (108 aa) fasta scores: E(): 2.5e-05, 31.11%
FT                   id in 90 aa"
FT                   /db_xref="InterPro:IPR010279"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W775"
FT                   /protein_id="CAE37946.1"
FT                   /translation="MHAHTEDRARMRESKQQVKSGLHELIAGAEALLRSTASYGGSELE
FT                   SVRDRLKHQLEAARDQAGGWERSAVERYQRASRVADGYVHENSWKLIGVAIVLGALLGA
FT                   CAMSDRGRRR"
FT   CDS             complement(70666..70965)
FT                   /transl_table=11
FT                   /locus_tag="BPP2655"
FT                   /product="Putative exported protein"
FT                   /note="Low similarity to Yersinia pestis putative
FT                   lipoprotein YPO2202 SWALL:Q8ZEH1 (EMBL:AJ414151) (104 aa)
FT                   fasta scores: E(): 0.0014, 27.77% id in 90 aa, and to
FT                   Escherichia coli osmotically inducible protein Y precursor
FT                   OsmY or B4376 SWALL:OSMY_ECOLI (SWALL:P27291) (201 aa)
FT                   fasta scores: E(): 0.014, 31.88% id in 69 aa"
FT                   /db_xref="InterPro:IPR007055"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W774"
FT                   /protein_id="CAE37947.1"
FT                   /translation="MTTASLPCALRSALLALLLAACSGPASGNDMALAAQIRQALVETP
FT                   GLRSETVQVQSRNGAVRLSGTADTDEAAAQALSAARSVPGVREVRNEIRVRDPL"
FT   misc_feature    complement(70882..70965)
FT                   /note="Signal peptide predicted for BPP2655 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.959 between residues 28 and 29"
FT   misc_feature    complement(70900..70932)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             71153..71896
FT                   /transl_table=11
FT                   /locus_tag="BPP2656"
FT                   /product="Conserved hypothetical protein"
FT                   /note="Similar in its C-terminal region to Rhizobium
FT                   meliloti SMC22-1 RB0216 or SMB20225 SWALL:Q9R9P4
FT                   (EMBL:AF178441) (228 aa) fasta scores: E(): 3.4e-09, 35.02%
FT                   id in 197 aa"
FT                   /db_xref="InterPro:IPR007055"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W773"
FT                   /protein_id="CAE37948.1"
FT                   /translation="MRNDNRRQPPYGDDDFGPHDEFERDFRLGGRDVRQGRPSWHGNDR
FT                   PEAQEYSRGSGRWGAEEPDYGRPYGERPNRATGGQPNRRGPQYEQGGPYPGTRRAQWNE
FT                   PITSRSADPGQSSYGGFRDEDPRWQRQQFHDGPLAGDYGGYHGDGGEWAGLAGAGHRAG
FT                   SRRILPKGYTRSDERLREDVCERLAHSGLDVSDVSVSVTDGQVELSGTVARRRDKYAIE
FT                   NCADDCLGVADIDNRIRVVAPTAAP"
FT   CDS             join(71911..72339,72341..72355)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP2657"
FT                   /product="conserved hypothetical protein (pseudogene)"
FT                   /note="Similar to Rhizobium meliloti hypothetical protein
FT                   Rb0503 or Smb20522 SWALL:Q92W42 (EMBL:AL603643) (122 aa)
FT                   fasta scores: E(): 2.1e-11, 40% id in 115 aa, and to
FT                   Agrobacterium tumefaciens Agr_c_723p SWALL:Q8U5M3
FT                   (EMBL:AE007978) (142 aa) fasta scores: E(): 6.3e-14, 42.24%
FT                   id in 116 aa"
FT                   /db_xref="PSEUDO:CAE37949.1"
FT   variation       72336..72343
FT                   /note="(CCAG)2 in parapertussis; (CCAG)1 in bronchiseptica"
FT   CDS             complement(72406..72894)
FT                   /transl_table=11
FT                   /locus_tag="BPP2658"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Anabaena sp. hypothetical protein ALR3394
FT                   SWALL:Q8YRQ0 (EMBL:AP003592) (171 aa) fasta scores: E():
FT                   7.7e-25, 46.15% id in 156 aa, and to Rhizobium meliloti
FT                   hypothetical membrane-anchored protein SMB21362 or RB0938
FT                   SWALL:Q92UZ6 (EMBL:AL603645) (146 aa) fasta scores: E():
FT                   7.4e-12, 30.13% id in 146 aa"
FT                   /db_xref="InterPro:IPR007353"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W772"
FT                   /protein_id="CAE37950.1"
FT                   /translation="MDVDWNGMFALTVPPLELFLRGTLIYWFLLALLRLAGRRDIGSLG
FT                   VADMLVLVLIADAAQNAMAGEYKSVTDGAILLLTIVGWTVAIDRASYFLPAVGRVLAPS
FT                   TVCLVRDGELQRRNMRREYITEAELMSELRLKGYDSLDDVHRAYMEPDGNISALRRHG"
FT   misc_feature    complement(72799..72864)
FT                   /note="1 probable transmembrane helix predicted for BPP2658
FT                   by TMHMM2.0 at aa 10-32"
FT   CDS             complement(72946..73365)
FT                   /transl_table=11
FT                   /locus_tag="BPP2659"
FT                   /product="Hypothetical protein"
FT                   /note="No significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W771"
FT                   /protein_id="CAE37951.1"
FT                   /translation="MSAAPERVRRPQTPCPWRPREPAGAAAPQARRLQGMRHPPLRRAI
FT                   VPKRSLWPVSPPDAEPRPGLGPSDSSDSASDLPDAAAETDSDTGGTGERPDVEYDRQPP
FT                   DGADIAPDTQTDAGHAGVSRHRPDPVRNGGPPDQS"
FT   CDS             73449..74189
FT                   /transl_table=11
FT                   /locus_tag="BPP2660"
FT                   /product="Hypothetical protein"
FT                   /note="No significant database matches"
FT                   /db_xref="InterPro:IPR003737"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W770"
FT                   /protein_id="CAE37952.1"
FT                   /translation="MDHGAGWRRLVGPDPGTAMAQRLLVVSPHFDDAVFSCGGLLAATP
FT                   GATVLTVFSGVPSVAAALPDWDRRCGFERADQAMQARQAEDRNALAELGASGLGLDLLD
FT                   SQYPGSEAMLARLPTVLAAAVQSIRPGALLIPLGLFDEDHVRVADAALAVRGLFDGCDW
FT                   LAYEEVLYRRRRGAVQARLTQLHGRKVYATPVALPGDARGASKTRAVAAYHSQLEPLGL
FT                   VPGHGDDAAPERYWRLTWPRPDAG"
FT   CDS             74246..74845
FT                   /transl_table=11
FT                   /locus_tag="BPP2661"
FT                   /product="Putative membrane protein"
FT                   /note="No significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W769"
FT                   /protein_id="CAE37953.1"
FT                   /translation="MSMIVAARFMTFDAAAAAAGRLQAAGVSQEDIHTFYVNSAGAHDR
FT                   YPLGGDRRADPDAGPAQYGAITGAAVGGLALGAIAGVVASALAATALALVAAVGVGAYV
FT                   GALFGALWVAGRGRRPLRPATASPTASPPGADEHAPVRHAGVMLALHVDGVQAERTLAL
FT                   LRDAGGQDLERAQGRWVDGKWEDFDPLQPPQLAAGG"
FT   misc_feature    74246..74317
FT                   /note="Signal peptide predicted for BPP2661 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.929) with cleavage site
FT                   probability 0.703 between residues 24 and 25"
FT   misc_feature    join(74432..74500,74519..74587)
FT                   /note="2 probable transmembrane helices predicted for
FT                   BPP2661 by TMHMM2.0 at aa 83-105 and 112-134"
FT   CDS             74977..75450
FT                   /transl_table=11
FT                   /locus_tag="BPP2662"
FT                   /product="Hypothetical protein"
FT                   /note="No significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W768"
FT                   /protein_id="CAE37954.1"
FT                   /translation="MARQHGASGDVQAYARQAAARLQDLGRGLADVAHAQAVTLPAGPD
FT                   VTQRTHLQELAQQREAAFDRMYLHWAGVALGEETLRHYQQAAEEAQAAPVREFAVHTLP
FT                   MLQNLLQDARRLARPPPQAEPRKLPPGGPGEPAPPSPASPSAPPSIDATRPGR"
FT   CDS             complement(75455..76462)
FT                   /transl_table=11
FT                   /locus_tag="BPP2663"
FT                   /product="Putative short-chain dehydrogenase"
FT                   /note="Similar to Bacillus subtilis general stress protein
FT                   39 YdaD SWALL:GS39_BACSU (SWALL:P80873) (285 aa) fasta
FT                   scores: E(): 3.5e-43, 51.07% id in 280 aa, and to Rhizobium
FT                   loti oxidoreductase, short-chain dehydrogenase/reductase
FT                   family Mll6858 SWALL:Q987Y1 (EMBL:AP003010) (287 aa) fasta
FT                   scores: E(): 5.3e-58, 60.21% id in 284 aa"
FT                   /db_xref="GOA:Q7W767"
FT                   /db_xref="HSSP:1AE1"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W767"
FT                   /protein_id="CAE37955.1"
FT                   /translation="MPKTPSDASPKTRQAADRTAERQREIQREQDQRDQRKPAAGRPGE
FT                   APRTGARDHPEPPMPRQHLAKPGNEADMALQPQFLAPAYRGSGKLEGLAALVTGGDSGI
FT                   GRAVAVLYAREGADVAIVYLQEHEDARETARHVEAEGRRSLLIAGDVRDPVFCEEAVAR
FT                   TLREFGKLDILVNNAAYQEHASSLQDITDERLDETFRTNIYGYFHMARAALPHLKEGAS
FT                   IVNTGSVTGLRGHPKLLDYSSTKGAIHAFTWSLAANVAERGIRVNAVAPGPVWTPLNPA
FT                   DQAPEQIKDFGAKTALKRAAQPEELSPAYVFLASPACASYITGIVLPVTGTPGE"
FT   misc_feature    complement(75464..76192)
FT                   /note="HMMPfam hit to PF00106, short chain dehydrogenase,
FT                   score 1.5e-65"
FT   misc_feature    complement(75695..75781)
FT                   /note="PS00061 Short-chain dehydrogenases/reductases family
FT                   signature."
FT   CDS             complement(join(76533..77414,77416..77517,77519..78973))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP2664"
FT                   /product="Putative ATP-dependent DNA-ligase (pseudogene)"
FT                   /note="Similar to Rhizobium loti ATP-dependent DNA ligase
FT                   MLL4606 SWALL:Q98DP8 (EMBL:AP003004) (829 aa) fasta scores:
FT                   E(): 1.1e-79, 42.85% id in 840 aa, and to Agrobacterium
FT                   tumefaciens ATP-dependent DNA ligase ATU4632 or AGR_L_502
FT                   SWALL:AAL45426 (EMBL:AE009391) (771 aa) fasta scores: E():
FT                   4.6e-72, 42.96% id in 789 aa"
FT                   /db_xref="PSEUDO:CAE37956.1"
FT   misc_feature    complement(77822..78388)
FT                   /note="HMMPfam hit to PF01068, ATP dependent DNA ligase
FT                   domain, score 6.8e-23"
FT   misc_feature    complement(78299..78325)
FT                   /note="PS00697 ATP-dependent DNA ligase AMP-binding site."
FT   CDS             complement(78992..79948)
FT                   /transl_table=11
FT                   /locus_tag="BPP2665"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein PA2150 SWALL:Q9I1W5 (EMBL:AE004642) (293 aa) fasta
FT                   scores: E(): 1.4e-45, 44.06% id in 295 aa, and to
FT                   Streptomyces coelicolor hypothetical protein SCO0601 or
FT                   SCF55.25c SWALL:Q9RJP3 (EMBL:AL132991) (347 aa) fasta
FT                   scores: E(): 1.8e-28, 38.71% id in 310 aa"
FT                   /db_xref="GOA:Q7W766"
FT                   /db_xref="InterPro:IPR009187"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W766"
FT                   /protein_id="CAE37957.1"
FT                   /translation="MLSLPSRQGGMMARIVWKGAIAFGLVHVPIVVHAASRPSRLDFDW
FT                   IDRRDNAPVGYQRINKRTGRAIDSEHIVKGYEYEKGEYVYMNDEDFARANVAATQTVEI
FT                   LDFVKAEEVPLYYFDTPYYLAPDRRGGPGYALLHRALRDSGRIGIAQVVLHTRQHLAAV
FT                   MPVGEVLMLVTMRYADEIVPAEEFGLDDAATHDRPGARELRMAMRLLDDMTRKWDPAQY
FT                   RDAYRDDLLAAIDRKVRAGKTHELAEPGEAAPRASAKVIDLAAMLQQSLERGKRRAGAP
FT                   AAPAKRAASARKATAKGAAAKRARKTPARRAPARKAA"
FT   misc_feature    complement(79313..79888)
FT                   /note="HMMPfam hit to PF02735, Ku70/Ku80 beta-barrel
FT                   domain, score 2.5e-46"
FT   misc_feature    complement(79844..79909)
FT                   /note="1 probable transmembrane helix predicted for BPP2665
FT                   by TMHMM2.0 at aa 13-35"
FT   CDS             complement(79968..80291)
FT                   /transl_table=11
FT                   /locus_tag="BPP2666"
FT                   /product="Conserved hypothetical protein"
FT                   /note="Similar to Escherichia coli, and Escherichia coli
FT                   O157:H7 ElaB protein or B2266 or Z3526 or ECS3154
FT                   SWALL:ELAB_ECOLI (SWALL:P52084) (101 aa) fasta scores: E():
FT                   1.6e-06, 40.74% id in 81 aa, and to Yersinia pestis
FT                   putative membrane protein YPOo0570 SWALL:Q8ZID5
FT                   (EMBL:AJ414143) (101 aa) fasta scores: E(): 2.1e-05, 36.58%
FT                   id in 82 aa"
FT                   /db_xref="InterPro:IPR010279"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W765"
FT                   /protein_id="CAE37958.1"
FT                   /translation="MPTSKRPANFPADPTAPMSAGARQRWLDEIHATLDDPQYADIEEL
FT                   KARLRQQLDAAREAWSQLADTTSSLASEAADCADEFVHARPWQAVGVAAGVGMLVGALL
FT                   CRR"
FT   CDS             complement(80352..80690)
FT                   /transl_table=11
FT                   /locus_tag="BPP2667"
FT                   /product="Conserved hypothetical protein"
FT                   /note="Similar to Pseudomonas putida hypothetical 12.0 kDa
FT                   protein SWALL:O68643 (EMBL:AF052749) (109 aa) fasta scores:
FT                   E(): 3.5e-22, 54.63% id in 108 aa, and to Salmonella
FT                   typhimurium putative cytoplasmic protein STM1261
FT                   SWALL:Q8ZPY1 (EMBL:AE008755) (108 aa) fasta scores: E():
FT                   1.2e-21, 59.4% id in 101 aa"
FT                   /db_xref="InterPro:IPR005560"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W764"
FT                   /protein_id="CAE37959.1"
FT                   /translation="MVMLNTHVVECLQACGRCAAACDYCASSCLREGHGADMARCIALD
FT                   LDCAAACRLCAAMMARESEFSTHMCTLCARICEVCGDECARHEPRHCQECATACHACAS
FT                   ACRAMARP"
FT   CDS             80775..81074
FT                   /transl_table=11
FT                   /locus_tag="BPP2667A"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Homo sapiens P8 protein p8 SWALL:Q9NRK3
FT                   (EMBL:AF216972) (77 aa) fasta scores: E(): 3.2, 35.52% id
FT                   in 76 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W763"
FT                   /protein_id="CAE37960.1"
FT                   /translation="MTARRAVHYHALYAISCARCKMSKPEPARGADAHDDPSLDQAKVL
FT                   PPRSPVLVPNLPPKPPARAQADKHGPAVDNQTESNWADGAAPQPRARNARSSIF"
FT   CDS             complement(81060..82085)
FT                   /transl_table=11
FT                   /locus_tag="BPP2668"
FT                   /product="Conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1332A"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein PA2244 SWALL:Q9I1M5 (EMBL:AE004650) (333 aa) fasta
FT                   scores: E(): 2.7e-66, 56.36% id in 330 aa, and to Rhizobium
FT                   meliloti putative DNA topoisomerase I protein RB1274 or
FT                   SMB21445 SWALL:Q92U65 (EMBL:AL603646) (351 aa) fasta
FT                   scores: E(): 8.8e-42, 40.82% id in 338 aa"
FT                   /db_xref="GOA:Q7W762"
FT                   /db_xref="InterPro:IPR014711"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W762"
FT                   /protein_id="CAE37961.1"
FT                   /translation="MSPAAPAALRYVDDSRPGLARRRLPGGKFAYYDADGRRVRDPATL
FT                   ARIAALAIPPAYREVWICARADGHLQATGRDARGRKQYRYHPDWRAWRDAAKYGQLREF
FT                   GRALPRIRRRVARDLSSRGLAPDKVAATVVRLLETTLARVGSRAYARENGSFGLTTVTR
FT                   RHAWLQGSRLRLRFTGKSGVAHDVTVRDRRIARVVKRCLDLPGQQLFHYLDEDGEPRPV
FT                   DSELINAYLREAGGGDFTAKHYRTWAASALALSLLLRCPAEGAAARRAAVVEVVKLVAA
FT                   RLANTPAVCRACYIHPGIVQAYLDGALPAGGAAPAGPRGLAADERRLLAFVAAWPHSEN
FT                   R"
FT   CDS             complement(82082..82804)
FT                   /transl_table=11
FT                   /locus_tag="BPP2669"
FT                   /product="hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1333"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein PA2141 SWALL:Q9I1X4 (EMBL:AE004641) (182 aa) fasta
FT                   scores: E(): 3e-18, 40.64% id in 187 aa, and to
FT                   Mycobacterium leprae cina-like protein CinA or ML2015 or
FT                   MLCB561.17 SWALL:CINA_MYCLE (SWALL:Q9X7D6) (428 aa) fasta
FT                   scores: E(): 8.7e-12, 41.95% id in 143 aa"
FT                   /db_xref="InterPro:IPR008136"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W761"
FT                   /protein_id="CAE37962.1"
FT                   /translation="MPPTVQGDAMNALQRTALYMQEQRLTLVTAESCTAGLIASLLAEE
FT                   PGAGALLDCAYVVYSPRAKTRCLGVAPDILRRHNLTSEAVARAMALGAARHSDANVAIA
FT                   NTGVADEPADGTPAGTQCYAWLFKAGPADAQPTIYTETARFDGARNTIRRDSARYALQR
FT                   LPHYHALWRVAGNPEPSTMKPTPTSHDRKQDDDTEREAQRSHGSQQSRTKKDGHVSQIG
FT                   SNQDQSSQRNRGQGARRS"
FT   misc_feature    complement(82301..82780)
FT                   /note="HMMPfam hit to PF02464, Competence-damaged protein,
FT                   score 8.2e-25"
FT   CDS             complement(82822..83577)
FT                   /transl_table=11
FT                   /locus_tag="BPP2670"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1334"
FT                   /db_xref="GOA:Q7W760"
FT                   /db_xref="InterPro:IPR002471"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W760"
FT                   /protein_id="CAE37963.1"
FT                   /translation="MTTHSETITIPVFDTQVAGTLLTPRAKLPGVLFVHGWGGSQRFDL
FT                   SRARDIAGLGCICLTFDLRGHAATEAQRRQVTREDSLRDIMAAYDALIAHPAVDTSAIA
FT                   VVGSSYGGYLAAILTTLRAVRWLALHVPALYRDDEWAQPKLQLDRAAISAYRHATVAPE
FT                   GNRALSACSSFRGDVLIVEAEHDDYIPHSTIMSYRGAFLHSHSLTHRIVDGADHALSDK
FT                   RCQQAYSSILLNWATEMVVGARVGAGRPA"
FT   misc_feature    complement(83236..83328)
FT                   /note="PS00708 Prolyl endopeptidase family serine active
FT                   site."
FT   CDS             complement(83564..84709)
FT                   /transl_table=11
FT                   /locus_tag="BPP2671"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1335"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W759"
FT                   /protein_id="CAE37964.1"
FT                   /translation="MNPAAAVPRRPVDLVVAHPGRRDAPRHERASLRALGRDIAELLGC
FT                   EYADALPAAARDPRLRVYYVPARTLLDGRALALGIQGPDDLFGGVAPHGFVATKAITHA
FT                   LPHDGCAAPAAWSRELGARLSDCVLPGCTVFALDEARQAGARMLRTGALRVKPVRATAG
FT                   RGQRKVADAAALDQALAEQDAGEVRRYGLVLEEHLEDISTYSVGVAQVGVHLASYIGTQ
FT                   SLTLDHAGLEVYGGSDLWFVPGPLPALLQLELDAPRRAALEHAMRYDEQAFACYPRLYA
FT                   SRRNYDVARGRDAQGRWRTGVLEQSWRAGGASLTEIAALRAFAQDGGLRRAHAATSEHY
FT                   GPDPAHPPGTRIVFHAHDAEVGFISKAGGMTQDNGTDDDDT"
FT   CDS             complement(84763..85710)
FT                   /transl_table=11
FT                   /locus_tag="BPP2672"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1338"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W758"
FT                   /protein_id="CAE37965.1"
FT                   /translation="MRHAHHHGHRRRRLGAWLAGIVGLAVVGVLLYQARRIDWHAVARA
FT                   AHDIPGPAVALAAALALAGYLAYAGFDILARRYAGHRLPAWQVAAIAMTSYALNLNLGV
FT                   LLGGVAVRLRLYGRHGLRTACGLRVVAFATATNWVGYAWLAGALLLAGQMPTPAGWHLG
FT                   AGLLRTVGAALLAGALAYLYLCRYARRRAYTLRGHRWVLPDLPTALRQMGLAGVSWAIM
FT                   GGIIYVLLQGRAPYPEVLAILLFSSIAALLAHIPGGLGVIEALLAAALATRMPASESLG
FT                   AVLMYRLLYAWIPLCVALPAYLGAEWRHRRAAAG"
FT   misc_feature    complement(join(84796..84861,84925..84990,85021..85086,
FT                   85150..85215,85261..85326,85390..85455,85486..85551,
FT                   85615..85665))
FT                   /note="8 probable transmembrane helices predicted for
FT                   BPP2672 by TMHMM2.0 at aa 15-32, 53-75, 85-107, 128-150,
FT                   165-187, 208-230, 240-262 and 283-305"
FT   CDS             complement(join(85707..86684,86683..86862))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP2673"
FT                   /product="probable phospholipase (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1339"
FT                   /db_xref="PSEUDO:CAE37966.1"
FT   misc_feature    complement(85980..86063)
FT                   /note="HMMPfam hit to PF00614, Phospholipase D. Active site
FT                   motif, score 2.4"
FT   misc_feature    complement(86463..86546)
FT                   /note="HMMPfam hit to PF00614, Phospholipase D. Active site
FT                   motif, score 3.9e-05"
FT   variation       complement(86682..86691)
FT                   /note="(CGGCG)2 in parapertussis; (CGGCG)3 in pertussis and
FT                   bronchiseptica"
FT   CDS             complement(86859..87617)
FT                   /transl_table=11
FT                   /locus_tag="BPP2674"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1340"
FT                   /db_xref="InterPro:IPR005135"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W757"
FT                   /protein_id="CAE37967.1"
FT                   /translation="MPPEPIRLRILTVNAHKGFTSFNRRFILHELREALREARPDLVLL
FT                   QEVLGEHQRHAARHARWPAVSQYEFLADTLWSAYAYGRNAVYPDGHHGNAVLSKYPIVS
FT                   HRNEDLSVGAAHEPRGMLHCVLDVRDAPAPLHALCVHLGLREAHRQEQLRRLCQYLRQH
FT                   VPAQAAALLAGDFNDWRQRADATLARCGLADVHRLALGHAARTFPAACPLLRLDRIYVR
FT                   NVAGSEPRRLSRRPWSRLSDHVPLAAEVTL"
FT   misc_feature    complement(86868..87596)
FT                   /note="HMMPfam hit to PF03372,
FT                   Endonuclease/Exonuclease/phosphatase family, score 1.6e-19"
FT   CDS             87711..87923
FT                   /transl_table=11
FT                   /locus_tag="BPP2675"
FT                   /product="Hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1341"
FT                   /note="No significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W756"
FT                   /protein_id="CAE37968.1"
FT                   /translation="MVRARPKETTMSATLCCHVPPKPDPIPPDSPPGDLPVDPDTDDPD
FT                   IDLPPPDAPGDPARRLAASVRFLLS"
FT   CDS             87996..88628
FT                   /transl_table=11
FT                   /locus_tag="BPP2676"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1342"
FT                   /db_xref="InterPro:IPR005149"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W755"
FT                   /protein_id="CAE37969.1"
FT                   /translation="MHPFHVFAMSAHGGRGGGHAGGRHGGGHGAGGDGPDWRRGRKFSA
FT                   DDLQLMILALLEEGPSHGYELIKALGARSRGFYTPSPGMVYPTLTWLEEAGHATVSQDG
FT                   ARKHYHLAEPGRAHLQANRERVTLLMAQLAHVGRKMEWMRRAWAGQPIETGSEGEDLAT
FT                   GWLPEYVQARMALKQALARHADATPARQRQLAAILARAAAELDDLSS"
FT   misc_feature    88149..88379
FT                   /note="HMMPfam hit to PF03551, Transcriptional regulator
FT                   PadR-like family, score 3.6e-15"
FT   CDS             88654..89454
FT                   /transl_table=11
FT                   /gene="mxcB"
FT                   /locus_tag="BPP2677"
FT                   /product="iron utilization protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1343"
FT                   /db_xref="GOA:Q7W754"
FT                   /db_xref="InterPro:IPR007037"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W754"
FT                   /protein_id="CAE37970.1"
FT                   /translation="MLPTELNVQRVRHPLKMRLLEVKRVTRPTPHLARITLAGDALRDF
FT                   VSASFDDHVKVFFPPPGAARPVLPELGPDGLVFAEGEPRPPMRDYTPRRHDARAGELDL
FT                   EFVLHGEGPAASWAARAQPGQQLGVAGPRGSFVVPLEYDWHLLVGDESALPAIARRLEE
FT                   LPPGKPVIALIEVADPAARLALSTRAQASVQWLLREPAGSRLPEAVRALRLPPGEGYAW
FT                   AAAESAVARAVRQALVDTHGLDKSRIRAASYWKRGEAAVHETHD"
FT   CDS             join(89616..91766,91770..92216)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP2678"
FT                   /product="autotransporter (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1344"
FT                   /db_xref="PSEUDO:CAE37971.1"
FT   misc_feature    89694..89726
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    join(90813..91766,91770..92213)
FT                   /note="HMMPfam hit to PF03212, Pertactin, score 4.6e-07"
FT   variation       91767..91769
FT                   /note="In-frame TAG stop codon in parapertussis; CAG in
FT                   pertussis and bronchiseptica"
FT   CDS             complement(92204..95623)
FT                   /transl_table=11
FT                   /locus_tag="BPP2679"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1345"
FT                   /db_xref="InterPro:IPR019993"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W753"
FT                   /protein_id="CAE37972.1"
FT                   /translation="MQQLGATRRYAASDLVGFLACEHLTQLDLRALNAGQAPAAAADEQ
FT                   MALVQAKGQAHEQAWLERLRARHPDLADVTRAGPDLAARLAATRAAMAAGAPVIYQAAL
FT                   CHGPYVGHADFLLRTECPSALGDYGYEALDTKLARSPRASFVLQLSFYAWLLEHAQGVA
FT                   PRSMHVVLGSGRELALRVADYAHYLRQVLRRFEAAIAAEPAPPTYPEPCEHCPQCRWRV
FT                   GCEARRVADDHLSLVAGMSRQQARRLNAQGVATLAQLGALPEHAQVAGIEAGTLQRLRA
FT                   QAALQWRARVDGARHYELLAAQDEGPRGLARLPRPDPGDMFFDMEGDPLEDGGLEYLFG
FT                   LYVVDDGAERFVPFWAHDRRQERQAFEAFMDFVAERLRRHPDAHIYHYAPYEATALKKL
FT                   MSLHGTREAEVDHLLRAGKLVDLYRVVREGLRISEPSYSIKYVERFYLPRRAGEVTNAG
FT                   ASIVYYERWKAAGEPRLLQDIADYNRDDVVSTWRLRDWLCGIRPAGLPWHNEADQQDLD
FT                   AARAVIGEMTEAERRLLPYRAALADDLPADEAAWSPRDAFRALAWHLLDFHRREQKPAW
FT                   WAWFARGEATDGELIEDAECLGGLVRDDAAPPVRQAQSLRYTYRYPAQETKLRTGARCT
FT                   DVRTGASLANLVVDPHARLASFTCSARKPAPPPRMALGPAAPVNSKELVNAVFRYGDAV
FT                   CRAPDGMSTPMRAVDALLRREPPRIRGLARGAPLVAPHAELLPQVLDVVARMDETTLFL
FT                   QGPPGAGKTYTGSRVLLQLLRAGRRVAVSSNSHHAINNLLRGLERLAEREGFALRGAKK
FT                   SASAGDDSCLGGRQIEDVFDNKDVDPARHQLVAGTAWLFARPEFEQAFDYLFVDEAGQV
FT                   SLANLVAMGQCARNIVLLGDQMQLGQPSQGTHPGRSGESALEYLLDGQATIAASQGVFL
FT                   DTSYRMHPEICGFISEAIYDGRLRAAPATAAHRLLLDEAAGRELPAHGIRYVPVPHDGN
FT                   TQSSREEAARVAELCALLLRQRYVGEAGAPAPLRLDDILFVAPYNVQVNTLRAALPDGA
FT                   RVGTVDKFQGQEAQVVIVSMATSSGDYLPRDLEFLFSRNRLNVAISRARTLAILVASPA
FT                   LTAVRCRSAEQMALVNTLCWVAETGSASPYQV"
FT   misc_feature    complement(93338..93361)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             complement(95631..96536)
FT                   /transl_table=11
FT                   /locus_tag="BPP2680"
FT                   /product="LysR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1346"
FT                   /db_xref="GOA:Q7W752"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W752"
FT                   /protein_id="CAE37973.1"
FT                   /translation="MQDLNDLYYFVQTVDHRGFAPAGRALGMPKSKLSRRIAVLEERLG
FT                   VRLIQRSTRHFSVTDIGQTYYEHCKAMLVEAEAAQEAIDAAQVEPRGVVRLSCPVALLH
FT                   THVGAMLGEFMLRYPRVTLHLDASNRRVDVLGEGVDVAIRVRPPPLENSDLVMRPFADR
FT                   GQCLVASPALLARHGAPALPADLAAWPSLALGQPNQPHSWLLTGPQDAQATVPLAPRMV
FT                   TTDMLALRSAAVAGVGVVQLPSMMVRGQLADGTLVRLLPEWAPCRELIHAVFPSRRGLL
FT                   SSVRTLVDFLAERFAALQED"
FT   misc_feature    complement(95649..96278)
FT                   /note="HMMPfam hit to PF03466, LysR substrate binding
FT                   domain, score 4.5e-43"
FT   misc_feature    complement(96348..96527)
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family, score 3.7e-13"
FT   CDS             96675..97253
FT                   /transl_table=11
FT                   /locus_tag="BPP2681"
FT                   /product="putative reductase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1347"
FT                   /db_xref="InterPro:IPR005025"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W751"
FT                   /protein_id="CAE37974.1"
FT                   /translation="MARLHIIICSTRPGRVGPAVADWFHAQALAHGGFEVALVDLAQVG
FT                   LPLYDEPRHPMLQQYEHAHTRAWSRSVASADAFVFVTPEYNYGPPPALVNALNYVYKEW
FT                   NYKPAAFVSYGGVSGGMRAVQAEKQTLTTLRMVPIFEYVAIPMVAERLDAAGRFQPQPI
FT                   HDSMAQGLLTELRRFSDALQVLREPASTP"
FT   misc_feature    96678..97205
FT                   /note="HMMPfam hit to PF03358, NADPH-dependent FMN
FT                   reductase, score 3e-35"
FT   CDS             join(97250..97723,97725..98147)
FT                   /pseudo
FT                   /transl_table=11
FT                   /gene="citE"
FT                   /locus_tag="BPP2682"
FT                   /product="putative citrate lyase beta chain (pseudogene)"
FT                   /EC_number="4.1.3.6"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1348"
FT                   /db_xref="PSEUDO:CAE37975.1"
FT   misc_feature    join(97352..97723,97725..97967)
FT                   /note="HMMPfam hit to PF02896, PEP-utilizing enzyme, TIM
FT                   barrel domain, score 0.03"
FT   CDS             complement(98247..99287)
FT                   /transl_table=11
FT                   /locus_tag="BPP2683"
FT                   /product="probable LacI-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1355"
FT                   /db_xref="GOA:Q7W750"
FT                   /db_xref="HSSP:1DBQ"
FT                   /db_xref="InterPro:IPR001761"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W750"
FT                   /protein_id="CAE37976.1"
FT                   /translation="MAGIAARTNVTIKDIATRLKLSHATVSRALADHPKISAATKASVR
FT                   EAAQAMGYVPNGTAQNMRTAHSPVIGLIVPDIQNDFYAAVAKIVADAAVARGFQLALSI
FT                   TEDNPEREFNDLRAFVVSRAAGVIITPTIKPKPETIALLKGVRAIQLIRQHAAVAAEAV
FT                   VIDERAATRAAAEHLIHYGHRRIAYVGTTTDLSLGEDRLSGFSSAMSKAGLDASLTAVG
FT                   PPRVEFAHRAVHGLMSGPKPPTALIIGSSRLTVGALKALRGLGLSCPADVSVVGYGDPD
FT                   WFELVGDGLTTVSPPVYPLGAYAINLLLARIQGEAVPAAADPAHATASRFPATLAIRGS
FT                   TRPLAR"
FT   misc_feature    complement(98271..99089)
FT                   /note="HMMPfam hit to PF00532, Periplasmic binding proteins
FT                   and sugar binding domain of the LacI family, score 4.6e-08"
FT   misc_feature    complement(99183..99266)
FT                   /note="HMMPfam hit to PF00356, Bacterial regulatory
FT                   proteins, lacI family, score 6.5e-06"
FT   CDS             complement(99275..99883)
FT                   /transl_table=11
FT                   /gene="leuD"
FT                   /locus_tag="BPP2684"
FT                   /product="3-isopropylmalate dehydratase small subunit"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1356"
FT                   /db_xref="GOA:Q7W749"
FT                   /db_xref="InterPro:IPR000573"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W749"
FT                   /protein_id="CAE37977.1"
FT                   /translation="MQAFIRAHGIILPMNQDHVDTDAIIPQRWLVTVERDGLADGFMGA
FT                   WRYDEHGQPRPECVLNQPAYQGAAIVLARENYGCGSSREHAVWAHQGYGIRAIVAASYG
FT                   PIFHENCLKNGLLPITLPAADVATLMAQALADPGCACEVDLVSQRVIGPDGRAYPFEID
FT                   AGRRQLLLEGVDDIDLALARAADIAAFQRRQQQDQPWLA"
FT   misc_feature    complement(99377..99757)
FT                   /note="HMMPfam hit to PF00694, Aconitase C-terminal domain,
FT                   score 4.8e-17"
FT   CDS             complement(join(99885..100463,100467..101312))
FT                   /pseudo
FT                   /transl_table=11
FT                   /gene="leuC"
FT                   /locus_tag="BPP2685"
FT                   /product="3-isopropylmalate dehydratase large subunit
FT                   (Pseudogene)"
FT                   /EC_number="4.2.1.33"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1357"
FT                   /db_xref="PSEUDO:CAE37978.1"
FT   misc_feature    complement(join(99915..100463,100467..101267))
FT                   /note="HMMPfam hit to PF00330, Aconitase family (aconitate
FT                   hydratase), score 6.7e-160"
FT   misc_feature    complement(100050..100091)
FT                   /note="PS01244 Aconitase family signature 2."
FT   misc_feature    complement(100221..100271)
FT                   /note="PS00450 Aconitase family signature 1."
FT   variation       complement(100464..100466)
FT                   /note="In-frame TAA stop codon in parapertussis; TAC in
FT                   pertussis and bronchiseptica"
FT   CDS             101482..102477
FT                   /transl_table=11
FT                   /locus_tag="BPP2686"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1358"
FT                   /db_xref="GOA:Q7W748"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W748"
FT                   /protein_id="CAE37979.1"
FT                   /translation="MNSIKRVRGKTAALFAALGLWAAAVPAAGAATPYPERPIRLIVPF
FT                   GAGGTTDILGRVLGQQLGEALKQTVIVENRPGANGNIGSDAVAKAAPDGYTLLFAADAT
FT                   LVINPTLYSQLPFKPESDFAPISRIAVVPLVLVANPAVKADTLPELVKLGGKPDARLDF
FT                   GSAGAGSMGHLVGERLNRATGMSMTHIPYKSGAQAISDVVSGQIPLLITGLAVAEPFLR
FT                   DGKLKAIAVTSGQRFPGAPKVPTIAEGGVKDFDSPSWYGLLAPAGTPAPVLEKIHAALA
FT                   SALQTEDMKKRMVELGAWPVVDTQAAFAELIKADTQRWSQIIQAAGITVQ"
FT   misc_feature    101482..101571
FT                   /note="Signal peptide predicted for BPP2686 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.593 between residues 30 and 31"
FT   misc_feature    101641..102465
FT                   /note="HMMPfam hit to PF03401, Uncharacterized protein
FT                   family, UPF0065, score 3.7e-96"
FT   CDS             102497..103675
FT                   /transl_table=11
FT                   /locus_tag="BPP2687"
FT                   /product="putative mandelate racemase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1359"
FT                   /db_xref="GOA:Q7W747"
FT                   /db_xref="InterPro:IPR001354"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W747"
FT                   /protein_id="CAE37980.1"
FT                   /translation="MRITAIREIAVPLQGNISNSLVSFAEHTVSLVALVSDVVRDGRPL
FT                   IGYAFDSIGRYAQPGLMRERFIPRLLQAAPHELLDDGGQAFDPARASAIMLRNEKPGGH
FT                   GDRAAAVGALELAFWDLNAKLRDEPAYCTIARHVGRPAQAGATQVYAAGGYYYDSGDPL
FT                   QRLRDEFRGYLDQGFVKFKMKIGGASLADDLARIEAALGVAGEGANLAVDANGRFDLDT
FT                   ALAYARALEPYGLRWYEEIGDPLDYHLNSLVAQAYAGTIATGENLFSLPDVRNLLHFAG
FT                   VRPGRDILQMDPGLSYGLTEYLRMMAAVEAAGFGRSCLHPHGGHLINLHIAAGLGLGGC
FT                   EAYPGVFQPFGGYPAACALGAGQVRPTDAPGFGLEQKQELAPYISVLAHGKA"
FT   misc_feature    102923..103648
FT                   /note="HMMPfam hit to PF01188, Mandelate racemase /
FT                   muconate lactonizing enzyme, C-terminal domain, score
FT                   0.00014"
FT   misc_feature    103686..103733
FT                   /note="Signal peptide predicted for BPP2688 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.961) with cleavage site
FT                   probability 0.399 between residues 16 and 17"
FT   misc_feature    103689..104051
FT                   /note="HMMPfam hit to PF02254, TrkA-N domain, score
FT                   0.00052"
FT   CDS             join(103701..104195,104198..104605)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP2688"
FT                   /product="putative ketopantoate reductase (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1360"
FT                   /db_xref="PSEUDO:CAE37981.1"
FT   CDS             complement(104762..105184)
FT                   /transl_table=11
FT                   /locus_tag="BPP2690"
FT                   /product="Conserved hypothetical protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein PA3123 SWALL:Q9HZA1 (EMBL:AE004736) (125 aa) fasta
FT                   scores: E(): 2.9e-26, 62.5% id in 120 aa, and to Rhizobium
FT                   loti translation initiation inhibitor MLL4450 SWALL:Q98E15
FT                   (EMBL:AP003004) (132 aa) fasta scores: E(): 1.1e-15, 42.4%
FT                   id in 125 aa"
FT                   /db_xref="HSSP:1NQ3"
FT                   /db_xref="InterPro:IPR006175"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W746"
FT                   /protein_id="CAE37982.1"
FT                   /translation="MSAITRIASPLPLPFSRATIAGGFLFLSGQIPMDANGQVVRGDIR
FT                   AQTDAAIARIRETLALAGAGLQDVVKVTVWLSDLALFADFNDAYKQHFQDGFPCRSTVE
FT                   AKLAMEVDVEIEVQAWIGDKTPRGGASYTPGPVSEA"
FT   misc_feature    complement(104822..105163)
FT                   /note="HMMPfam hit to PF01042, YjgF family, score 3.3e-30"
FT   CDS             complement(105298..105711)
FT                   /transl_table=11
FT                   /locus_tag="BPP2691"
FT                   /product="putative exported protein"
FT                   /note="No significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W745"
FT                   /protein_id="CAE37983.1"
FT                   /translation="MPSCRPRLALACLAVLLAVPAAPVLAAPSGAAPCPPAAQAVSAPL
FT                   SSGGAVVVSNGACEPASIGSYVVNRYDDLDAGAFRAGLAIARDGVLVEWALDERQGKRV
FT                   LRLVSETAGSGAYRNTQYIELTGDGGLRLLDRP"
FT   misc_feature    complement(105634..105711)
FT                   /note="Signal peptide predicted for BPP2691 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.971 between residues 26 and 27"
FT   CDS             complement(105790..107019)
FT                   /transl_table=11
FT                   /gene="cycH"
FT                   /locus_tag="BPP2692"
FT                   /product="cytochrome C-type biogenesis protein"
FT                   /note="Similar to Rhizobium meliloti cytochrome C-type
FT                   biogenesis protein CycH or R01017 or SMC02361
FT                   SWALL:CYCH_RHIME (SWALL:P45400) (381 aa) fasta scores: E():
FT                   1.7e-16, 30.64% id in 310 aa, and to Bradyrhizobium
FT                   japonicum cytochrome C-type biogenesis protein CycH
FT                   SWALL:CYCH_BRAJA (SWALL:P45399) (369 aa) fasta scores: E():
FT                   6.7e-15, 26.43% id in 367 aa"
FT                   /db_xref="GOA:Q7W744"
FT                   /db_xref="InterPro:IPR019734"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W744"
FT                   /protein_id="CAE37984.1"
FT                   /translation="MTALWLIVLLLLLATLAALILPMLRRERAAGPADAAATVRAFYQA
FT                   QRAQLQRELREGALTAQAHARAEEELQRELLQALDARRDTAPAPARRASLAAACALSVA
FT                   VPVAAMLLYQHLGDPRAAASMMLAAPQDAHAEDAAQDMTQAIGALAERLRRQPDDAEGW
FT                   YMLARSYETLGRYDDAVAAYMETVRLVPDQPALLADLADALLSANGGAPDAKSERVIAQ
FT                   ALALQPDQPKALALAGMAALRRGDAAQALAHWQRLKTLLPPDSPAAAQIDNNIAQARAM
FT                   ATGAPPAPAPQAAAPDSLAGHASIAAALRAQVADTDTVFILARPADGGRMPLAILRKQV
FT                   RELPLDFTLDRAQAMSPAATLAQASTVDVEIRVSRAGAAEARPGDLVGVLRGVAVGSRG
FT                   LRLVADTVVR"
FT   misc_feature    complement(106228..106329)
FT                   /note="HMMPfam hit to PF00515, TPR Domain, score 8.5"
FT   misc_feature    complement(106441..106542)
FT                   /note="HMMPfam hit to PF00515, TPR Domain, score 5e-05"
FT   misc_feature    complement(join(106669..106734,106957..107007))
FT                   /note="2 probable transmembrane helices predicted for
FT                   BPP2692 by TMHMM2.0 at aa 4-21 and 95-117"
FT   misc_feature    complement(106915..107019)
FT                   /note="Signal peptide predicted for BPP2692 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.997) with cleavage site
FT                   probability 0.602 between residues 35 and 36"
FT   CDS             complement(107016..107438)
FT                   /transl_table=11
FT                   /gene="ccmH"
FT                   /gene_synonym="nrfF"
FT                   /gene_synonym="cycL"
FT                   /locus_tag="BPP2693"
FT                   /product="cytochrome C-type biogenesis protein"
FT                   /note="Similar to Pseudomonas aeruginosa cytochrome C-type
FT                   biogenesis protein CcmH or PA1482 SWALL:Q9I3N0
FT                   (EMBL:AE004577) (155 aa) fasta scores: E(): 3.9e-16, 46.1%
FT                   id in 154 aa, and to Escherichia coli cytochrome C-type
FT                   biogenesis protein NrfF precursor or B4075 SWALL:NRFF_ECOLI
FT                   (SWALL:P32711) (127 aa) fasta scores: E(): 2.6e-13, 46.31%
FT                   id in 95 aa"
FT                   /db_xref="InterPro:IPR005616"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W743"
FT                   /protein_id="CAE37985.1"
FT                   /translation="MRRAALLLGLWLLLGAPAAADIAQRELRLAHSLRCLVCQNQTLAE
FT                   SNAPLAHDMRALIRQQLADGRSDEEVMQFFEDRYGDFVRYEPPFKPATWLLWLGPFALL
FT                   LAGFVVLWRALARRPGAAPLTDAQRARAERFLDEES"
FT   misc_feature    complement(join(107094..107159,107367..107417))
FT                   /note="2 probable transmembrane helices predicted for
FT                   BPP2693 by TMHMM2.0 at aa 7-24 and 93-115"
FT   misc_feature    complement(107379..107438)
FT                   /note="Signal peptide predicted for BPP2693 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.977 between residues 20 and 21"
FT   CDS             complement(107435..107956)
FT                   /transl_table=11
FT                   /gene="ccmG"
FT                   /gene_synonym="dsbE"
FT                   /gene_synonym="cycY"
FT                   /locus_tag="BPP2694"
FT                   /product="cytochrome C-type biogenesis protein"
FT                   /note="Similar to Pseudomonas aeruginosa thiol:disulfide
FT                   interchange protein DsbE or CcmG or PA1481 SWALL:DSBE_PSEAE
FT                   (SWALL:Q9I3N1) (180 aa) fasta scores: E(): 2.6e-27, 47.02%
FT                   id in 168 aa, and to Escherichia coli, and Escherichia coli
FT                   O157:H7 thiol:disulfide interchange protein DsbE or CcmG or
FT                   B2195 or Z3452 or ECS3084 SWALL:DSBE_ECOLI (SWALL:P33926)
FT                   (185 aa) fasta scores: E(): 2.7e-23, 43.6% id in 172 aa"
FT                   /db_xref="GOA:Q7W742"
FT                   /db_xref="HSSP:1DBY"
FT                   /db_xref="InterPro:IPR017937"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W742"
FT                   /protein_id="CAE37986.1"
FT                   /translation="MLRYLLPLAAFLAMAAFLALGLGRDPRALPSAMLDKPAPPIGLPL
FT                   LQGDGRRLEVAQLRGRVWVLNVWASWCAPCREELPLLQEVGPRDAVPIYGLNYKDKPED
FT                   ARAWLARHGNPYVASASDVDGRVGIEYGVYGVPETFVIDGAGRIRYRQLGVLTPQIWRE
FT                   RLLPVIEGLR"
FT   misc_feature    complement(107711..107767)
FT                   /note="PS00194 Thioredoxin family active site."
FT   misc_feature    complement(107888..107944)
FT                   /note="1 probable transmembrane helix predicted for BPP2694
FT                   by TMHMM2.0 at aa 4-23"
FT   misc_feature    complement(107894..107956)
FT                   /note="Signal peptide predicted for BPP2694 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.999) with cleavage site
FT                   probability 0.464 between residues 21 and 22"
FT   CDS             complement(107956..109950)
FT                   /transl_table=11
FT                   /gene="ccmF"
FT                   /gene_synonym="cycK"
FT                   /locus_tag="BPP2695"
FT                   /product="cytochrome C-type biogenesis protein"
FT                   /note="Similar to Pseudomonas fluorescens cytochrome C-type
FT                   biogenesis protein CycK SWALL:CCMF_PSEFL (SWALL:P52225)
FT                   (660 aa) fasta scores: E(): 4.8e-131, 54.42% id in 656 aa,
FT                   and to Escherichia coli cytochrome C-type biogenesis
FT                   protein CcmF or B2196 SWALL:CCMF_ECOLI (SWALL:P33927) (647
FT                   aa) fasta scores: E(): 2.2e-95, 51.89% id in 661 aa"
FT                   /db_xref="GOA:Q7W741"
FT                   /db_xref="InterPro:IPR003568"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W741"
FT                   /protein_id="CAE37987.1"
FT                   /translation="MIPEIGLFSLILALLVAIVQGVLPLVGASTGWQAGLRVARPAAVT
FT                   QFCLVTVAMGCLAWSFLDNDFSVLYVAGNSHADLPAAYRFAALWGGHEGSLLLWLYLLT
FT                   AWTLAVALHSRALPPAFAARVLAVMAWISIGFLLFLLFLSNPFERLMPPAQAGRDLNPL
FT                   LQDPGMIVHPPMLYMGYVGFSVAFAFAIAALLSGELDAIWARWVRPWTLLAWMFLTIGI
FT                   LLGSAWAYYVLGWGGWWFWDPVENASFMPWLAGTALIHSLIVTERRGAFRSWTVLLAIA
FT                   AFSLSILGTFLVRSGVLTSVHAFAVDPGRGLYILGFMTLIVGGSLALYAWRAPTVGLGG
FT                   GFALLSRESLLLSNNVVLAAATGAVLLGTLYPVALDVLDWGKISIGPPYFEAVFVPLMT
FT                   PAIFLMGVGPMARWKHSAVPDLAQRLRIAFGVSLATALTVPLAWPGARAWPGSPLIVLG
FT                   LWLAAWSVASAAAHAWQRLADGEGSWARRLRRQPRAWYGMLLAHAGVGVFIAGVTLANG
FT                   YEDKQELRMDIGATQAAGGYQFTFAGIAPAAGPNYQAERARFVVTRDGRPVVTLHPEKR
FT                   HYTVQGMPLSHAAIDTRFTRDLFVALGEPVGQRAWTVRLQVKPFMAWIWSGCVLMALGG
FT                   LMAATDRRYRQWRAAEARQAVTAVAREAG"
FT   misc_feature    complement(join(108034..108090,108403..108468,
FT                   108532..108597,108613..108678,108718..108783,
FT                   108829..108894,108958..109011,109057..109122,
FT                   109159..109209,109255..109320,109360..109425,
FT                   109522..109587,109609..109665,109765..109830,
FT                   109870..109935))
FT                   /note="15 probable transmembrane helices predicted for
FT                   BPP2695 by TMHMM2.0 at aa 5-27, 40-62, 95-114, 121-143,
FT                   175-197, 210-232, 247-264, 276-298, 313-331, 352-374,
FT                   389-411, 424-446, 451-473, 494-516 and 620-639"
FT   misc_feature    complement(108592..109248)
FT                   /note="HMMPfam hit to PF01578, Cytochrome C assembly
FT                   protein, score 9.5e-38"
FT   misc_feature    complement(109870..109950)
FT                   /note="Signal peptide predicted for BPP2695 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.895) with cleavage site
FT                   probability 0.357 between residues 27 and 28"
FT   CDS             complement(109947..110408)
FT                   /transl_table=11
FT                   /gene="ccmE"
FT                   /gene_synonym="cycJ"
FT                   /locus_tag="BPP2696"
FT                   /product="cytochrome C-type biogenesis protein"
FT                   /note="Similar to Bradyrhizobium japonicum cytochrome
FT                   C-type biogenesis protein CycJ SWALL:CCME_BRAJA
FT                   (SWALL:P45401) (169 aa) fasta scores: E(): 1.3e-23, 53.23%
FT                   id in 139 aa, and to Escherichia coli, and Escherichia coli
FT                   O157:H7 cytochrome C-type biogenesis protein Ccme or B2197
FT                   or Z3454 or ECS3086 SWALL:CCME_ECOLI (SWALL:P33928) (159
FT                   aa) fasta scores: E(): 9.6e-16, 39.24% id in 158 aa"
FT                   /db_xref="GOA:Q7W740"
FT                   /db_xref="HSSP:1J6Q"
FT                   /db_xref="InterPro:IPR012340"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W740"
FT                   /protein_id="CAE37988.1"
FT                   /translation="MTTRRGRRALLIAGGVGLLALAAALVLNALRSNLVFFFSPTQVHA
FT                   HEAPSSGSFRVGGLVRAGSVERAADGLTLRFVVTDTVREVPVAYTGLLPALFREGKGVV
FT                   VAGTMGADGVFRATEVLAKHNENYMPPQAADALRQAGALPSATLQTEAR"
FT   misc_feature    complement(110013..110408)
FT                   /note="HMMPfam hit to PF03100, CcmE, score 3.4e-56"
FT   misc_feature    complement(110274..110408)
FT                   /note="Signal peptide predicted for BPP2696 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.957 between residues 45 and 46"
FT   misc_feature    complement(110316..110381)
FT                   /note="1 probable transmembrane helix predicted for BPP2696
FT                   by TMHMM2.0 at aa 9-31"
FT   CDS             complement(110395..110547)
FT                   /transl_table=11
FT                   /locus_tag="BPP2696A"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein Pa1478 SWALL:Q9I3N4 (EMBL:AE004577) (58 aa) fasta
FT                   scores: E(): 6.5, 33.33% id in 39 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W739"
FT                   /protein_id="CAE37989.1"
FT                   /translation="MSWDALFSLQGHSPYILAAYGGAALLIAVELAVLWRAARRPPTGG
FT                   DDDDA"
FT   CDS             complement(110544..111302)
FT                   /transl_table=11
FT                   /gene="ccmC"
FT                   /locus_tag="BPP2697"
FT                   /product="Putative heme export protein"
FT                   /note="Similar to Pseudomonas aeruginosa heme exporter
FT                   protein Ccmc or PA1477 SWALL:Q9I3N5 (EMBL:AE004577) (252
FT                   aa) fasta scores: E(): 2.6e-39, 46.35% id in 233 aa, and to
FT                   Escherichia coli, and Escherichia coli O157:H7 heme
FT                   exporter protein C CcmC or B2199 or Z3456 or ECS3088
FT                   SWALL:CCMC_ECOLI (SWALL:P33929) (245 aa) fasta scores: E():
FT                   1.2e-33, 44.79% id in 221 aa"
FT                   /db_xref="GOA:Q7W738"
FT                   /db_xref="InterPro:IPR003557"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W738"
FT                   /protein_id="CAE37990.1"
FT                   /translation="MRDRPAGGRGWLRYASPAVFYPMAGRWAPRLGALAALLAAAGLYL
FT                   GLAVAPVDSQQGEVYRILFVHVAAAWMSMFLYLVMAGYAALGLVYNTRLSFMMMRALAP
FT                   TGALFTAATLWTGALWGKPTWGAWWVWDARLTSELILLFLYLGFMALQAAAGDTRRADR
FT                   GGAILLLVGVINIPIIYFSVTWWNTLHQGASISLTAAPSMARIMVAATLLMVAAFWAYS
FT                   AAVALARVRVVIAGREPAAAAGGPLSREGS"
FT   misc_feature    complement(110592..111215)
FT                   /note="HMMPfam hit to PF01578, Cytochrome C assembly
FT                   protein, score 2.1e-32"
FT   misc_feature    complement(join(110619..110684,110745..110810,
FT                   110850..110915,110946..110996,111036..111101,
FT                   111147..111212))
FT                   /note="6 probable transmembrane helices predicted for
FT                   BPP2697 by TMHMM2.0 at aa 39-61, 76-98, 111-128, 138-160,
FT                   173-195 and 215-237"
FT   CDS             complement(111337..112002)
FT                   /transl_table=11
FT                   /gene="ccmB"
FT                   /locus_tag="BPP2698"
FT                   /product="Heme exporter protein B"
FT                   /note="Similar to Vibrio cholerae heme exporter protein B
FT                   VC2056 SWALL:Q9KQE4 (EMBL:AE004279) (222 aa) fasta scores:
FT                   E(): 1.8e-34, 50.22% id in 221 aa, and to Escherichia coli,
FT                   and Escherichia coli O157:H7 heme exporter protein B CcmB
FT                   or B2200 or Z3457 or ECS3089 SWALL:CCMB_ECOLI
FT                   (SWALL:P33930) (220 aa) fasta scores: E(): 3.6e-31, 46.54%
FT                   id in 217 aa"
FT                   /db_xref="GOA:Q7W737"
FT                   /db_xref="InterPro:IPR003544"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W737"
FT                   /protein_id="CAE37991.1"
FT                   /translation="MLKSLAQIAWRELRLAWRRPADTLGATLFFVVAGTLFPLALGPDP
FT                   QLLAAIGPGVLWVSALLAILLSLQQPFVHDHGSGALEQLLVSPHPLPVLVGLKLAAHWL
FT                   ATCAPLILASPFLALQFGLSAQAVGVLALSLLLGTPTLALIGGLGAALTLGLRGGALLP
FT                   LVVLPLYVPVLIFGSGAVAATASGLGAWPQLSLLGACLCLAILLCPWSASAALRVALE"
FT   misc_feature    complement(111349..111900)
FT                   /note="HMMPfam hit to PF03379, CcmB protein, score 6.7e-48"
FT   misc_feature    complement(join(111355..111420,111457..111522,
FT                   111553..111618,111640..111705,111796..111861))
FT                   /note="5 probable transmembrane helices predicted for
FT                   BPP2698 by TMHMM2.0 at aa 17-39, 69-91, 98-120, 130-152 and
FT                   164-186"
FT   CDS             complement(111968..112642)
FT                   /transl_table=11
FT                   /gene="ccmA"
FT                   /locus_tag="BPP2699"
FT                   /product="Putative heme export protein"
FT                   /note="Similar to Haemophilus influenzae heme exporter
FT                   protein A CcmA or HI1089 SWALL:CCMA_HAEIN (SWALL:P45032)
FT                   (212 aa) fasta scores: E(): 1.5e-17, 40.42% id in 188 aa,
FT                   and to Escherichia coli heme exporter protein A CcmA or
FT                   B2201 SWALL:CCMA_ECOLI (SWALL:P33931) (207 aa) fasta
FT                   scores: E(): 6.7e-16, 40.21% id in 189 aa"
FT                   /db_xref="GOA:Q7W736"
FT                   /db_xref="InterPro:IPR003439"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W736"
FT                   /protein_id="CAE37992.1"
FT                   /translation="MQNAEAAPALLAAHGLVGRRGGRRPLDLNLRPGQLVHVRGANGSG
FT                   KTSLLRTLAGLLRPRRGEVRWNGADIHADLPGYYLHMAHLGHDNGCSDALTARENLRYA
FT                   LHVAGAPRAEPELERALRDWGLAAGADAPAARLSQGQGRRLALARVMLSRKRLWLLDEP
FT                   DAGLDAASLQRLHGMLDAHLAGGGAAVLASHRGGGAWAGCTQTLELDEYAHAEVVGADC
FT                   LA"
FT   misc_feature    complement(112007..112546)
FT                   /note="HMMPfam hit to PF00005, ABC transporter, score
FT                   5.5e-33"
FT   misc_feature    complement(112502..112525)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             complement(112629..113279)
FT                   /transl_table=11
FT                   /gene="napC"
FT                   /locus_tag="BPP2700"
FT                   /product="cytochrome C-type protein"
FT                   /note="Similar to Escherichia coli, and Escherichia coli
FT                   O157:H7 cytochrome C-type protein NapC or B2202 or Z3459 or
FT                   ECS3091 SWALL:NAPC_ECOLI (SWALL:P33932) (200 aa) fasta
FT                   scores: E(): 1e-42, 59.14% id in 186 aa, and to Pseudomonas
FT                   aeruginosa cytochrome C-type protein NapC or PA1172
FT                   SWALL:Q9I4G5 (EMBL:AE004547) (198 aa) fasta scores: E():
FT                   1e-60, 76.04% id in 192 aa"
FT                   /db_xref="GOA:Q7W735"
FT                   /db_xref="InterPro:IPR011031"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W735"
FT                   /protein_id="CAE37993.1"
FT                   /translation="MPAMRELIKRYWDIIRRPSVHFSLGFLTVGGFVGGILFWGAFNTA
FT                   MELTNTEQFCTGCHEMRDNVYAELKGTIHYTNRSGVRAICSDCHVPHNWTDKIARKTQA
FT                   SKEVWGKIFGTINTREKFVEKRLELAQHEWARLKANDSLECRNCHNYESMDFTRQSMRA
FT                   QNMHSTYLADKSKTCIDCHKGIAHTLPRMPPDQTSLAPPAAGPARADTGHAER"
FT   misc_feature    complement(112704..113231)
FT                   /note="HMMPfam hit to PF03264, NapC/NirT cytochrome c
FT                   family, N-terminal region, score 1.7e-110"
FT   misc_feature    complement(112731..112748)
FT                   /note="PS00190 Cytochrome c family heme-binding site
FT                   signature."
FT   misc_feature    complement(112830..112847)
FT                   /note="PS00190 Cytochrome c family heme-binding site
FT                   signature."
FT   misc_feature    complement(113010..113027)
FT                   /note="PS00190 Cytochrome c family heme-binding site
FT                   signature."
FT   misc_feature    complement(113100..113117)
FT                   /note="PS00190 Cytochrome c family heme-binding site
FT                   signature."
FT   misc_feature    complement(113154..113219)
FT                   /note="1 probable transmembrane helix predicted for BPP2700
FT                   by TMHMM2.0 at aa 20-42"
FT   CDS             complement(113287..113763)
FT                   /transl_table=11
FT                   /gene="napB"
FT                   /locus_tag="BPP2701"
FT                   /product="diheme cytochrome C precursor"
FT                   /note="Similar to Alcaligenes eutrophus diheme cytochrome C
FT                   precursor NapB SWALL:NAPB_ALCEU (SWALL:P39186) (169 aa)
FT                   fasta scores: E(): 1.5e-34, 61.93% id in 155 aa, and to
FT                   Escherichia coli diheme cytochrome C precursor NapB or
FT                   B2203 SWALL:NAPB_ECOLI (SWALL:P33933) (149 aa) fasta
FT                   scores: E(): 3.1e-16, 45.45% id in 132 aa"
FT                   /db_xref="HSSP:1JNI"
FT                   /db_xref="InterPro:IPR011031"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W734"
FT                   /protein_id="CAE37994.1"
FT                   /translation="MSLRTAAIVLSVALGAAAWAAPPLPLQDPMRGPTPVADETNPPLM
FT                   SPVENKDIRRVRTYSMQPPTIPHKIDGYQIDKNFNRCLACHARVNTEETQAPPLSVTHY
FT                   MDRDSNVLAEVSPRRYFCVQCHVPQAEARPLVSNTFQDIDVILKRLTAPKPDQK"
FT   misc_feature    complement(113383..113400)
FT                   /note="PS00190 Cytochrome c family heme-binding site
FT                   signature."
FT   misc_feature    complement(113503..113520)
FT                   /note="PS00190 Cytochrome c family heme-binding site
FT                   signature."
FT   misc_feature    complement(113704..113763)
FT                   /note="Signal peptide predicted for BPP2701 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.999 between residues 20 and 21"
FT   CDS             complement(113783..116278)
FT                   /transl_table=11
FT                   /gene="napA"
FT                   /locus_tag="BPP2702"
FT                   /product="periplasmic nitrate reductase precursor"
FT                   /EC_number="1.7.99.4"
FT                   /note="Similar to Alcaligenes eutrophus periplasmic nitrate
FT                   reductase precursor NapA SWALL:NAPA_ALCEU (SWALL:P39185)
FT                   (831 aa) fasta scores: E(): 0, 80.26% id in 831 aa, and to
FT                   Escherichia coli periplasmic nitrate reductase precursor
FT                   NapA or B2206 SWALL:NAPA_ECOLI (SWALL:P33937) (828 aa)
FT                   fasta scores: E(): 0, 69.67% id in 831 aa"
FT                   /db_xref="GOA:Q7W733"
FT                   /db_xref="HSSP:1OGY"
FT                   /db_xref="InterPro:IPR017909"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W733"
FT                   /protein_id="CAE37995.1"
FT                   /translation="MSMARRDFIKQTAAAAAATVAGVPLTGYTQNIVTESEAAKLKWSK
FT                   APCRFCGTGCGVNVAVKDNQVVATHGDFNAEVNKGLNCVKGYFLSKIMYGSDRLTQPLL
FT                   RIKDGKYAKDGEFAPVSWDQAFDVMAEQFKRVLKDKGPEAVGMFGSGQWTVWEGYAALK
FT                   LMKAGFRTNNLDPNARHCMASAAVGFMRTFGADEPMGCYDDIENADAFVLWGSNMAEMH
FT                   PILWTRVTDRRLSAPATKVAVLSTFEHRSYELADLTLTFEPQSDLAILNYIANHIIRTK
FT                   RVNRDFVDKHTVFREGNADIGYGLRPEHPLQQAARNAGDAGGSKPITFDDFARFVSKYD
FT                   LEYTAKLSGVPKNRLEELAELYADPKVRVTSFWTMGFNQHTRGVWCNNMVYNIHLLTGK
FT                   ISTPGNSPFSLTGQPSACGTAREVGTFSHRLPADLVVTNPEHRRHAEEIWKLPDGTIPS
FT                   KVGAHAVLQNRMLKDGKINAYWVMVNNNMQAAANLMNEGLPGYRNPENFIVVSDAYPTV
FT                   TTLSADLILPAAMWVEKEGAYGNAERRTQFWHQLVDAPGQARSDLWQLVEFSKRFKVEE
FT                   VWPADLLAKKPEYRGKTLYDVLFANGKVNQFPNTELDPEYANQEAQAFGFYLQKGLFEE
FT                   YAEFGRGHGHDLAPFDVYHKARGLRWPVVDGKETLWRYREGSDPYVKPGTGFQFYGNPD
FT                   GKAVIFALPYEPPPEAPDKEYPFWLSTGRVLEHWHSGSMTRRVPELYKAFPEAVCFMHP
FT                   DDAQALGVRRGVEVEVVSRRGKMRTRVETRGRDKPPRGLVFVPWFDAGQLINKVTLDAT
FT                   DPISFQTDFKKCAVKIVKV"
FT   misc_feature    complement(113804..114130)
FT                   /note="HMMPfam hit to PF01568, Molydopterin dinucleotide
FT                   binding domain, score 8.1e-41"
FT   misc_feature    complement(114302..116158)
FT                   /note="HMMPfam hit to PF00384, Molybdopterin
FT                   oxidoreductase, score 5e-212"
FT   misc_feature    complement(115352..115387)
FT                   /note="PS00192 Cytochrome b/b6 heme-ligand signature."
FT   CDS             complement(116262..>116474)
FT                   /transl_table=11
FT                   /gene="napD"
FT                   /locus_tag="BPP2702A"
FT                   /product="component of nitrate reductase system (partial)"
FT                   /note="Similar to Pseudomonas sp. G-179 NapD napD
FT                   SWALL:Q9Z3W5 (EMBL:AF083948) (93 aa) fasta scores: E():
FT                   0.12, 30.15% id in 63 aa, and to Pseudomonas aeruginosa
FT                   napd protein of periplasmic nitrate reductase napd or
FT                   pa1175 SWALL:Q9I4G2 (EMBL:AE004547) (109 aa) fasta scores:
FT                   E(): 0.087, 36.06% id in 61 aa"
FT                   /db_xref="InterPro:IPR005623"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W732"
FT                   /protein_id="CAE37996.1"
FT                   /translation="ALAAGHGAEIHAVSDTGKLVVTLEAHSTGEMLERIAAVQGQDGVL
FT                   ASAMVYQHIDTLDSMNEEIDDVNGS"
FT   misc_feature    116415..116918
FT                   /note="HMMPfam hit to PF00005, ABC transporter, score
FT                   6.4e-37"
FT   CDS             116442..117005
FT                   /transl_table=11
FT                   /locus_tag="BPP2703"
FT                   /product="Putative ABC-transporter ATP-binding protein
FT                   (partial)"
FT                   /note="Similar to Clostridium acetobutylicum glutamine ABC
FT                   transporter, ATP-binding protein CAC0378 SWALL:Q97M22
FT                   (EMBL:AE007552) (243 aa) fasta scores: E(): 2.2e-34, 51.93%
FT                   id in 233 aa, and to Escherichia coli hypothetical
FT                   amino-acid ABC transporter ATP-binding protein YecC or
FT                   B1917 SWALL:YECC_ECOLI (SWALL:P37774) (250 aa) fasta
FT                   scores: E(): 8.6e-34, 47.6% id in 250 aa"
FT                   /db_xref="GOA:Q7W731"
FT                   /db_xref="HSSP:1B0U"
FT                   /db_xref="InterPro:IPR017871"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W731"
FT                   /protein_id="CAE37997.1"
FT                   /translation="MDFRAVPGGKSQYAADADVRRLCRKMGMVFQSFNLFPHMTVLQNV
FT                   IEAPVTVKGLRRDAVIPKAEELLRKVGLLAKRDNYPGRLSGGQKQRVAIARALAMEPDI
FT                   MLFDEPTSALDPELTGEVLRTMRQLADEHMTMLVVTHEMGFARKAAHRVVFMDEGRILE
FT                   EAASDRFFDAPQHPRTREFLAHML"
FT   misc_feature    116691..116735
FT                   /note="PS00211 ABC transporters family signature."
FT   CDS             complement(117035..117796)
FT                   /transl_table=11
FT                   /locus_tag="BPP2704"
FT                   /product="Putative membrane protein"
FT                   /note="Similar to Rhizobium meliloti putative stomatin-like
FT                   protein RB1114 or SMB20989 SWALL:Q92UL3 (EMBL:AL603646)
FT                   (256 aa) fasta scores: E(): 1.1e-64, 76.54% id in 243 aa,
FT                   and to Archaeoglobus fulgidus hypothetical protein AF1420
FT                   SWALL:YE20_ARCFU (SWALL:O28852) (249 aa) fasta scores: E():
FT                   5.5e-47, 55.93% id in 236 aa, and to Homo sapiens
FT                   erythrocyte band 7 integral membrane protein Epb72 or Bnd7
FT                   SWALL:BAN7_HUMAN (SWALL:P27105) (287 aa) fasta scores: E():
FT                   7.2e-36, 44% id in 250 aa"
FT                   /db_xref="GOA:Q7W730"
FT                   /db_xref="InterPro:IPR001972"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W730"
FT                   /protein_id="CAE37998.1"
FT                   /translation="MFMNLAFYLPILVLLLALIALAVRILREYERGVIFTLGRFTGVKG
FT                   PGLILIIPVVQQMVRVDQRTSVFDVPSQDVISRDNVSVKVNAVIYFRVIDPERSVIQVE
FT                   NFRQATSELAQTTLRSVLGKHDLDEMLSERDKLNIDIQEILDAQTDAWGIKVANVEIKH
FT                   IDLNESMVRVIARQAEAERERRAKVINAEGEEQAAQKLLDAARTLAQQPEAMQLRYLST
FT                   LAVIGAQNNSTVVFPFPTDLAGALGRWAQKQ"
FT   misc_feature    complement(117212..117733)
FT                   /note="HMMPfam hit to PF01145, SPFH domain / Band 7 family,
FT                   score 7.4e-74"
FT   misc_feature    complement(join(117632..117697,117719..117784))
FT                   /note="2 probable transmembrane helices predicted for
FT                   BPP2704 by TMHMM2.0 at aa 4-26 and 33-55"
FT   misc_feature    complement(117731..117796)
FT                   /note="Signal peptide predicted for BPP2704 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.995) with cleavage site
FT                   probability 0.989 between residues 22 and 23"
FT   CDS             complement(join(117840..118664,118668..119018,
FT                   119021..119284))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP2705"
FT                   /product="Putative membrane protein (pseudogene)"
FT                   /note="Similar to Rhizobium etli NfeD SWALL:Q52729
FT                   (EMBL:U41754) (467 aa) fasta scores: E(): 5.1e-76, 55.9% id
FT                   in 449 aa, and to Pseudomonas aeruginosa hypothetical
FT                   protein PA0451 SWALL:Q9I667 (EMBL:AE004482) (443 aa) fasta
FT                   scores: E(): 5.3e-44, 53.4% id in 455 aa"
FT                   /db_xref="PSEUDO:CAE37999.1"
FT   misc_feature    complement(join(117876..118664,118668..119018,
FT                   119021..119242))
FT                   /note="HMMPfam hit to PF01957, Protein of unknown function
FT                   DUF107, score 5.1e-145"
FT   misc_feature    complement(join(118094..118159,118220..118285,
FT                   118301..118366,118397..118462))
FT                   /note="4 probable transmembrane helices predicted for
FT                   BPP2705 by TMHMM2.0 at aa 274-296, 306-328, 333-355 and
FT                   375-397"
FT   misc_feature    complement(119174..119284)
FT                   /note="Signal peptide predicted for BPP2705 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.678) with cleavage site
FT                   probability 0.223 between residues 37 and 38"
FT   CDS             complement(119443..>119928)
FT                   /transl_table=11
FT                   /locus_tag="BPP2707"
FT                   /product="Putative iron-containing alcohol dehydrogenase
FT                   (partial)"
FT                   /note="Similar to the C-terminal region of Alcaligenes
FT                   eutrophus maleylacetate reductase I TfdFI or TfdF
FT                   SWALL:TFF1_ALCEU (SWALL:P27137) (354 aa) fasta scores: E():
FT                   1.9e-09, 29.6% id in 152 aa, and of Pseudomonas sp.
FT                   maleylacetate reductase TcbF SWALL:TCBF_PSESQ
FT                   (SWALL:P27101) (352 aa) fasta scores: E(): 9.4e-08, 30.38%
FT                   id in 158 aa"
FT                   /db_xref="GOA:Q7W729"
FT                   /db_xref="InterPro:IPR018211"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W729"
FT                   /protein_id="CAE38000.1"
FT                   /translation="TCLHGLKMLFDGLRQTRRAPDDLDARLQSQLGVWLASTGLGRIEW
FT                   GASHGIGHQLGAVAAVPHGHTSCVMLHNVMRHNLSHTAERQALISATLGQPGVPAADLI
FT                   EALARELGMPTRLREVGVERAHFEAIAAGGMQNMMVRSNPRPIASPADIVAILEQAY"
FT   misc_feature    complement(119731..119793)
FT                   /note="PS00060 Iron-containing alcohol dehydrogenases
FT                   signature 2."
FT   CDS             join(120089..120682,120684..121055)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP2708"
FT                   /product="Conserved hypothetical protein (pseudogene)"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein PA0290 SWALL:Q9I6K0 (EMBL:AE004467) (323 aa) fasta
FT                   scores: E(): 1.2e-25, 33.33% id in 294 aa, and to
FT                   Synechocystis sp. PleD or SLR1657 SWALL:P74658
FT                   (EMBL:D90917) (275 aa) fasta scores: E(): 4.6e-24, 36.11%
FT                   id in 216 aa"
FT                   /db_xref="PSEUDO:CAE38001.1"
FT   misc_feature    120365..120493
FT                   /note="HMMPfam hit to PF00785, PAC motif, score 1.4e-09"
FT   misc_feature    join(120530..120682,120684..121028)
FT                   /note="HMMPfam hit to PF00990, GGDEF domain, score 2.1e-65"
FT   CDS             complement(121217..121513)
FT                   /transl_table=11
FT                   /locus_tag="BPP2709"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1688"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W728"
FT                   /protein_id="CAE38002.1"
FT                   /translation="MSLYYRISFVLSVLALAAWAIAVTLYKAPRHGDGYGPDPLGVLLF
FT                   LALWPVGLLLAHSGLLACLVRGQRPASILQGRHGVAIHLALGAGFLAYALYRV"
FT   misc_feature    complement(join(121226..121291,121328..121393,
FT                   121439..121504))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BPP2709 by TMHMM2.0 at aa 48-70, 85-107 and 119-141"
FT   CDS             121620..122537
FT                   /transl_table=11
FT                   /locus_tag="BPP2710"
FT                   /product="LysR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1687"
FT                   /db_xref="GOA:Q7W727"
FT                   /db_xref="HSSP:1IXC"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W727"
FT                   /protein_id="CAE38003.1"
FT                   /translation="MGPTDMRVSTRQLQAFLLVAEVRSFTRAAETLHVTQAGLSSMINE
FT                   LETQVGIRLFERSNRATALTQAGTQFLPYARQAVESLNKGMLELSALNRRQQGGIRVGV
FT                   SPLIASTVLPAVMREFQQCTGRSCEVVDAELEVLHDMVETGRLDATYGTYMRRASRLKS
FT                   EYIFGMALRLAGPGRLIPPGLEIAGVEDWARQHDIVLWALPDSNAVQQVVDRYLLEVGA
FT                   HALRRQEVCHVATVASLISAGMGMGFVPTFLADFYDRDTIGQIALPQGAPAVDFYCTSD
FT                   ASNPASSSIHVFSRLLAAHCSAAA"
FT   misc_feature    121647..121826
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family, score 2.2e-20"
FT   misc_feature    121689..121781
FT                   /note="PS00044 Bacterial regulatory proteins, lysR family
FT                   signature."
FT   misc_feature    121896..122525
FT                   /note="HMMPfam hit to PF03466, LysR substrate binding
FT                   domain, score 8.4e-11"
FT   CDS             complement(122542..123255)
FT                   /transl_table=11
FT                   /locus_tag="BPP2711"
FT                   /product="probable short-chain dehydrogenase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1686"
FT                   /db_xref="GOA:Q7W726"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W726"
FT                   /protein_id="CAE38004.1"
FT                   /translation="MKTQATAGDGAAVVAIAGGMGALGRALAQRFKQRGDQVVVLDQAT
FT                   GAAGLPQAGADLALLDVDLNDVASTRHAFDTIARRFGRLDALVSVAGGFHHETLAEGKV
FT                   EAWDRMYALNLRTAVVACQAALPLMLARGAGHVVCIGSDAIGRAHAGLGAYAASKAGVA
FT                   ELVRTLAAETRDQGIAANAVLPGTLDTPGNRRAMPDADFSRWVSLDAAAALILFLASPL
FT                   AAQINGACIPIVNRC"
FT   misc_feature    complement(122548..123228)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF00106, short chain dehydrogenase,
FT                   score 7.8e-31"
FT   misc_feature    complement(122746..122832)
FT                   /note="PS00061 Short-chain dehydrogenases/reductases family
FT                   signature."
FT   misc_feature    complement(123172..123255)
FT                   /note="Signal peptide predicted for BPP2711 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.625) with cleavage site
FT                   probability 0.538 between residues 28 and 29"
FT   CDS             complement(123269..124240)
FT                   /transl_table=11
FT                   /locus_tag="BPP2712"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1685"
FT                   /db_xref="GOA:Q7W725"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W725"
FT                   /protein_id="CAE38005.1"
FT                   /translation="MMKGICAAFAFAALAASWQGPAQAAFPDQPIKLVVPFAPGATIGP
FT                   LAQLVSEQLSSDLGTPVYTEFKTGAGGNIGADIVAKSPGDGYTLLLGTISILTINPSLY
FT                   PDLPFDPVKDFKPVSMLVTTQNILVVNPESKIQSVADLADYARQHPGQATFGSSGTGST
FT                   MHLAGELFSTTAQVKMTHVPYRGGGPARSDLLGGRLTLMFSDLSAVPMVQAGKLRALAV
FT                   TGSQRDGRIPDIPTMQESGMKGFDVEPWYGLVAPAGTPDAVIARLNASVRKVFDKQQVR
FT                   DALQNIGLRPASDLSVAYMAGKIDSDLGKWAPIVKSVDMKTN"
FT   misc_feature    complement(123281..124105)
FT                   /note="HMMPfam hit to PF03401, Uncharacterized protein
FT                   family, UPF0065, score 2.4e-95"
FT   misc_feature    complement(124169..124240)
FT                   /note="Signal peptide predicted for BPP2712 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.975 between residues 24 and 25"
FT   CDS             complement(124301..126031)
FT                   /transl_table=11
FT                   /locus_tag="BPP2713"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1684"
FT                   /db_xref="GOA:Q7W724"
FT                   /db_xref="HSSP:1GLV"
FT                   /db_xref="InterPro:IPR012855"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W724"
FT                   /protein_id="CAE38006.1"
FT                   /translation="MHDEQALDLVIRGGLLMDGHGGAPRVADIGVRGALIAEIGDIAPG
FT                   AAAEIDARGKIVTPGFVDIHTHYDGQIIWNSRLAPSSWHGVTTVVMGNCGVGFAPVRAA
FT                   DRGNLIELMEGVEDIPGIALHEGLDWAWETFPDFLRATERIEHDIDFCAQLPHAALRVY
FT                   VMGERALRLEMATPEDIARMRSLAAEAMRHGAIGFSTSRSINHRSVTGDPMPLLRAAEE
FT                   ELTGIAMGLADAGGGVLEIIIDFDDPDMLEAEFGMMRRLVEKSGRPLSFSLMQKHGNKD
FT                   GWRRLLALTAQAAADGLPIRAQVAPRGVGVLLGLQGSRNVFSDCASYKAIAQLALDERV
FT                   RRMRDPALRAQLLRESQDTPLGKRLNEFDNIFPLGNPPCYDPGPERSIAALARRADADP
FT                   AELAYDCLLEEDGKALLFSPFANYADQNLDACAQMLADPNTVIGLGDGGAHVALISDAS
FT                   FPTFLLKHWGGGAGRPAFDLPWLVKRQTADTARAVGLHDRGVLEVGKKADINVIDPATI
FT                   DPGVPVMNMDLPAGKGRYLQKPSGYVATIVSGVVVYRDAAATGALPGRLVRMAAESAAA
FT                   "
FT   CDS             126250..126630
FT                   /transl_table=11
FT                   /locus_tag="BPP2714"
FT                   /product="putative transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1683"
FT                   /db_xref="GOA:Q7W723"
FT                   /db_xref="InterPro:IPR001845"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W723"
FT                   /protein_id="CAE38007.1"
FT                   /translation="MIQESLYYFGMNAEQAVSSLGALAHAQRLSVFRALVVAGPAGLTP
FT                   SVMADGLGIARNALSFHLKELAHAGLVSVEQHGRNLIYRADFFRMNALLGYLTEHCCQG
FT                   ATCEVSDSRKNTAGCDAGARRA"
FT   CDS             126634..127821
FT                   /transl_table=11
FT                   /locus_tag="BPP2715"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1682"
FT                   /db_xref="InterPro:IPR011701"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W722"
FT                   /protein_id="CAE38008.1"
FT                   /translation="MPGAPVRVVGILGTAQTLAWASSYYLPAMLADPMARDVGVSTPTV
FT                   YAAFSAALVASALIGPWTGLAIDRHGGRMVLAGTSLLFALGLGMLDAAQGLWTMVAASL
FT                   VMGVAMGAGLYEAAFSSLVRLYGHHARGAITGITLIAGFASTVGWPLSAWMETLFGWRG
FT                   ACLGWAALHLMIGLPLNAWLPKAVAAETPSPDAPAAQEGTLPAARPGPQGLATALLAFV
FT                   FAATWFISTAMATHLPRMLQATGATLAAAVAVGALIGPAQVAGRLLEFGLLRHVHPLLS
FT                   ARLAALAHPAGVAVLLAAGPALAPLLAILHGAGNGILTIAKGTLPLALFGPQGYGACQG
FT                   WLMMPARVAQALAPFLFGLALDAWRANALWLSGGIGLAACAALLVLRARPDPIKP"
FT   misc_feature    join(126652..126720,126763..126831,126844..126912,
FT                   126922..126990,127027..127095,127270..127323,
FT                   127360..127428,127486..127554,127573..127641,
FT                   127723..127791)
FT                   /note="10 probable transmembrane helices predicted for
FT                   BPP2715 by TMHMM2.0 at aa 7-29, 44-66, 71-93, 97-119,
FT                   132-154, 213-230, 243-265, 285-307, 314-336 and 364-386"
FT   CDS             127824..128267
FT                   /transl_table=11
FT                   /gene="arsC"
FT                   /locus_tag="BPP2716"
FT                   /product="arsenate reductase"
FT                   /EC_number="1.20.4.1"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1681"
FT                   /db_xref="GOA:Q7W721"
FT                   /db_xref="HSSP:1J9B"
FT                   /db_xref="InterPro:IPR012335"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W721"
FT                   /protein_id="CAE38009.1"
FT                   /translation="MHQQRCVMTSITIYHNPACATSRNVLGLIRNSGEEPAIIEYLKTP
FT                   PDAATLRSLIVAMGMPVRDLLRQKGTPYDELGLSDPKWTDEQLIDLMLQYPILINRPIV
FT                   TTPLGTRLCRPSETVLDLLSRPQRGAFDKEDGQPVIDADGNRV"
FT   CDS             128260..128982
FT                   /transl_table=11
FT                   /gene="arsH"
FT                   /locus_tag="BPP2717"
FT                   /product="putative NADPH-dependent FMN reductase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1680"
FT                   /db_xref="InterPro:IPR005025"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W720"
FT                   /protein_id="CAE38010.1"
FT                   /translation="MSEVLADLPNIDPSRFKQPNAAELFPPGRATHAPRFLLLYGSLRE
FT                   RSYSRLVAEEAARLLRALGGETRLFNPSGLPLVDDASEDHPKVRELHELVRWAEGMIWS
FT                   SPERHGAMSGLMKTQIDWIPLSMGAVRPTQGKTLAVMQVSGGSQSFNAVNQMRVLGRWM
FT                   RMLTIPNQSSVAKAYQEFDEAGRMQPSPYYDRVVDVAEELMKFTLLTRDASPYLVDRYS
FT                   ERKEAAEALSRRTAQARI"
FT   misc_feature    128359..128886
FT                   /note="HMMPfam hit to PF03358, NADPH-dependent FMN
FT                   reductase, score 7.9e-57"
FT   CDS             complement(128979..129587)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP2718"
FT                   /product="Putative LysR-family transcriptional regulator
FT                   (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1679"
FT                   /note="There is an internal deletion relative to B.
FT                   bronchiseptica orthologue. Similar in its N-terminal region
FT                   to Rhodobacter capsulatus CbbrI SWALL:O34014 (EMBL:U87283)
FT                   (298 aa) fasta scores: E(): 2.3e-05, 32.57% id in 175 aa,
FT                   and to Chromatium vinosum rubisco operon transcriptional
FT                   regulator RbcR SWALL:RBCR_CHRVI (SWALL:P25544) (302 aa)
FT                   fasta scores: E(): 2.3e-05, 57.69% id in 52 aa, and to
FT                   Escherichia coli hca operon transcriptional activator HcaR
FT                   or PhdR or B2537 SWALL:HCAR_ECOLI (SWALL:Q47141) (296 aa)
FT                   fasta scores: E(): 0.00088, 30.7% id in 127 aa"
FT                   /db_xref="PSEUDO:CAE38011.1"
FT   misc_feature    complement(129411..129575)
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family, score 5.9e-17"
FT   misc_feature    complement(129441..129533)
FT                   /note="PS00044 Bacterial regulatory proteins, lysR family
FT                   signature."
FT   CDS             129745..130740
FT                   /transl_table=11
FT                   /locus_tag="BPP2719"
FT                   /product="putative exported protein"
FT                   /note="Similar to Rhizobium meliloti hypothetical protein
FT                   RA1058 or SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa)
FT                   fasta scores: E(): 2.6e-42, 43.42% id in 327 aa, and to
FT                   Agrobacterium tumefaciens hypothetical protein ATU4727 or
FT                   AGR_L_312 SWALL:AAL45521 (EMBL:AE009401) (329 aa) fasta
FT                   scores: E(): 7.8e-39, 40.81% id in 321 aa"
FT                   /db_xref="GOA:Q7W719"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W719"
FT                   /protein_id="CAE38012.1"
FT                   /translation="MTSSPALTMTLRAVLALAATASLALGPAAPAAAETFPAKPVTLVV
FT                   PFPPGGPTDTSARLFGAVMADKLGQPVIVENRAGAGGSVGTTVVTRSKPDGYTLLWGGT
FT                   SSIVVAPALYTNLQYDPIKSFTPIGMAVRGPLILVSRPDLGPKDIGQLRDYAKNHDLSV
FT                   ASAGTGSIGHLTAEMFKSEAGARMLHVPYRGGAPALTDVMGGQVDLFFDTVTLLTPQIR
FT                   AGKLRAYAVTGSQRYSGLPEVPTVAETIGKPFEAYSWFGLLAPAGTPAPAVQALTDALA
FT                   AAAKDPEVIKQLSALGLEPVGDTPQEFAQAIRADLDKWTGVVRSAGVKPQ"
FT   misc_feature    129745..129843
FT                   /note="Signal peptide predicted for BPP2719 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.866 between residues 33 and 34"
FT   misc_feature    129910..130728
FT                   /note="HMMPfam hit to PF03401, Uncharacterized protein
FT                   family, UPF0065, score 3e-111"
FT   CDS             130780..131985
FT                   /transl_table=11
FT                   /locus_tag="BPP2720"
FT                   /product="putative monooxygenase"
FT                   /note="Similar to Bordetella pertussis hypothetical 45.1
FT                   kDa protein SWALL:O30447 (EMBL:AF006000) (406 aa) fasta
FT                   scores: E(): 1.3e-46, 41.37% id in 394 aa, and to
FT                   Salmonella typhimurium putative monooxygenase STM2175
FT                   SWALL:Q8ZNM3 (EMBL:AE008797) (397 aa) fasta scores: E():
FT                   8.1e-37, 34.42% id in 398 aa"
FT                   /db_xref="GOA:Q7W718"
FT                   /db_xref="InterPro:IPR003042"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W718"
FT                   /protein_id="CAE38013.1"
FT                   /translation="MPDTSSPRILIAGAGLGGLTAALALQARGFQVRVLEQAAQLRELG
FT                   AGIQLSANANRVLYQLGLGAALEQVASPAPGKRIRLWNTGQTWPLFDLGAQSVERYGYP
FT                   YLTIYRADLHRVLAEAVLARDPQAIELGARVESVAQDDAAASVTLADGSTRQADILVGA
FT                   DGVHSRVRAALHGQDQARFSGALAWRGVIPAHKLPPHLREPYAVNWVGPGAHVIHYPLR
FT                   RGELVNFVGILERDDWQVESWTQQGTIAECARDFAGWHEDVQTLIHALDTPFKWAMMLR
FT                   EPLARWTSGRITLLGDACHPTLPMLASGAAMAIEDGYVLAHCLDGMRADARQALVRYQD
FT                   LRVERTARVVRGSAENAKRFHNPELAHAAGAAAYVEQQWSEARVRERYEWLFTYDVDAE
FT                   PV"
FT   misc_feature    130780..130860
FT                   /note="Signal peptide predicted for BPP2720 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.975) with cleavage site
FT                   probability 0.617 between residues 27 and 28"
FT   misc_feature    131245..131841
FT                   /note="HMMPfam hit to PF01360, Monooxygenase, score
FT                   5.8e-38"
FT   CDS             132329..133540
FT                   /transl_table=11
FT                   /gene="dadA3"
FT                   /locus_tag="BPP2721"
FT                   /product="D-amino acid dehydrogenase small subunit"
FT                   /EC_number="1.4.99.1"
FT                   /note="Similar to Rhizobium loti D-amino acid dehydrogenase
FT                   3 small subunit DadA3 or MLR9201 SWALL:DAD3_RHILO
FT                   (SWALL:Q981X2) (412 aa) fasta scores: E(): 1.7e-101, 64.25%
FT                   id in 400 aa, and to Escherichia coli D-amino acid
FT                   dehydrogenase small subunit DadA or DadR or B1189 or Z1952
FT                   or ECS1684 SWALL:DADA_ECOLI (SWALL:P29011) (432 aa) fasta
FT                   scores: E(): 4e-39, 33.25% id in 403 aa"
FT                   /db_xref="GOA:Q7W717"
FT                   /db_xref="InterPro:IPR006076"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W717"
FT                   /protein_id="CAE38014.1"
FT                   /translation="MSRIAVIGAGITGVTTAYALALRDHQVTVFDRHRYSAMETSFANG
FT                   GQLSASNAEVWNSRSTLFKGLRWMLRRDAPLLLNPRPSWHKYSWLGEFLRQIPRYEANT
FT                   IETVRLAIAARQHLFDIAARERIDFDHERRGILHFYASRREYDSALRVNALLRAGGLER
FT                   RPVSPEEMRAIEPALQGDFYGGFFTESDSTGDIHKFTTGLARAAARHGALFRYETPVSG
FT                   IDHRGGAIAITTAEAVERYDKVVICAGVGSRRFASMVGDRVNIYPVKGYSITVSLDDEA
FT                   SQAGAPWTSLLDDRAKIVTSRLGAGRFRVAGTAEFNGFNRDIRADRVEPLVAWVRRYFP
FT                   QVSTSRVVPWAGLRPMLPSMLPRVGPGKRPGVFYNTGHGHLGWTLSAATAQLVAEAVTA
FT                   GAGT"
FT   misc_feature    132329..132385
FT                   /note="Signal peptide predicted for BPP2721 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.969) with cleavage site
FT                   probability 0.771 between residues 19 and 20"
FT   misc_feature    132332..133522
FT                   /note="HMMPfam hit to PF01266, FAD dependent
FT                   oxidoreductase, score 1.5e-05"
FT   CDS             complement(133571..134038)
FT                   /transl_table=11
FT                   /locus_tag="BPP2722"
FT                   /product="putative 4-hydroxybenzoyl-CoA thioesterase"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein PA5185 SWALL:Q9HU04 (EMBL:AE004931) (147 aa) fasta
FT                   scores: E(): 2.6e-29, 55.4% id in 148 aa, and to
FT                   Mycobacterium tuberculosis hypothetical protein Rv0163 or
FT                   MT0172 or MTCI28.03 SWALL:O07408 (EMBL:Z97050) (151 aa)
FT                   fasta scores: E(): 2.4e-24, 44.21% id in 147 aa"
FT                   /db_xref="InterPro:IPR006683"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W716"
FT                   /protein_id="CAE38015.1"
FT                   /translation="MNDSAGQAPRPQRWQRAGFSHFEAMPVRWMDCDMYGHVNNVVYYA
FT                   YFDTAVNRYLASAGQLDPQAGAVIGLVVETHCNFHAPAEFPETLQIGLRVAHVGRSSVR
FT                   YELGVFRPGDELCAAQGHFVHVYVERASRRPVALPAGLRACLGRLAAAGRA"
FT   misc_feature    complement(133595..133936)
FT                   /note="HMMPfam hit to PF03061, 4-hydroxybenzoyl-CoA
FT                   thioesterase, score 1.4e-25"
FT   CDS             complement(134035..135189)
FT                   /transl_table=11
FT                   /locus_tag="BPP2723"
FT                   /product="Putative alcohol dehydrogenase"
FT                   /EC_number="1.1.1.1"
FT                   /note="Similar to Agrobacterium tumefaciens alcohol
FT                   dehydrogenase AttL or ATU5138 or AGR_PAT_199 SWALL:AAL45828
FT                   (EMBL:AE008938) (386 aa) fasta scores: E(): 1.1e-69, 54.94%
FT                   id in 384 aa, and to Pseudomonas putida alcohol
FT                   dehydrogenase AdhA SWALL:O68647 (EMBL:AF052750) (382 aa)
FT                   fasta scores: E(): 1.6e-36, 37.27% id in 381 aa"
FT                   /db_xref="GOA:Q7W715"
FT                   /db_xref="InterPro:IPR018211"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W715"
FT                   /protein_id="CAE38016.1"
FT                   /translation="MNGFEFRTHARTLAGEGTSQRLGEAVAAQWGPCRILVVTDEQLVR
FT                   LGLVAALAQSLRDAGHTVQVYDGVLADPPEAVVSQAIARGRETDVQCVIGFGGGSSMDI
FT                   AKLVAAFAGSAADFRDSYGIDRVATARLPLVQVPTTAGTGSEATPIAIVTREDASKAGI
FT                   VSPVLYCDIAVLDAALTRGLPPAVTAATGIDAIVHAVEAYTSRLRKNPISDGLARQALR
FT                   LLCRSIGPACRDGADMAARHDMLLGAMLAGQAFANAPVAAVHALAYPLGGVFHVPHGLS
FT                   NALMFGAVLRFNLPQAGAAYAQLAQIACPQVDGPQQARAEGFVQEMASLGPRLGLPRRL
FT                   AEVGVAERDLPMLAQQAMQQQRLLVNNPRELGYDDALRLYREAL"
FT   misc_feature    complement(134062..135162)
FT                   /note="HMMPfam hit to PF00465, Iron-containing alcohol
FT                   dehydrogenase, score 1.7e-84"
FT   misc_feature    complement(134587..134673)
FT                   /note="PS00913 Iron-containing alcohol dehydrogenases
FT                   signature 1."
FT   CDS             complement(join(135186..136037,136036..136368))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP2724"
FT                   /product="Putative ketoacyl CoA thiolase (pseudogene)"
FT                   /EC_number="2.3.1.16"
FT                   /note="Similar to Ralstonia solanacearum probable
FT                   acetyl-CoA acetyltransferase protein RSC1761 or RS02948
FT                   SWALL:Q8XYJ7 (EMBL:AL646066) (392 aa) fasta scores: E():
FT                   2e-93, 64.45% id in 391 aa, and to Caulobacter crescentus
FT                   thiolase family protein CC3462 SWALL:Q9A2U4 (EMBL:AE006005)
FT                   (395 aa) fasta scores: E(): 1.1e-80, 57.61% id in 394 aa,
FT                   and to Rattus norvegicus 3-ketoacyl-CoA thiolase A,
FT                   peroxisomal precursor SWALL:THIJ_RAT (SWALL:P21775) (434
FT                   aa) fasta scores: E(): 1e-51, 44.78% id in 393 aa"
FT                   /db_xref="PSEUDO:CAE38017.1"
FT   misc_feature    complement(135194..135566)
FT                   /note="This hit extended beyond the end of the feature by 0
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF02803, Thiolase, C-terminal domain,
FT                   score 3.5e-54"
FT   misc_feature    complement(135303..135353)
FT                   /note="PS00737 Thiolases signature 2."
FT   misc_feature    complement(join(135579..136037,136036..136365))
FT                   /note="HMMPfam hit to PF00108, Thiolase, N-terminal domain,
FT                   score 1.7e-80"
FT   misc_feature    complement(136054..136110)
FT                   /note="PS00098 Thiolases acyl-enzyme intermediate
FT                   signature."
FT   CDS             complement(136365..138449)
FT                   /transl_table=11
FT                   /locus_tag="BPP2725"
FT                   /product="Putative enoyl-CoA isomerase"
FT                   /EC_number="4.2.1.17"
FT                   /note="Similar to Ralstonia solanacearum probable
FT                   trifunctonal: enoyl-CoA hydratase and
FT                   delta3-cis-delta2-trans-enoyl-CoA isomerase and
FT                   3-hydroxyacyl-CoA dehydrogenase oxidoreductase protein
FT                   RSC1759 or RS02946 SWALL:Q8XYJ9 (EMBL:AL646066) (706 aa)
FT                   fasta scores: E(): 4.5e-100, 45.23% id in 692 aa, and to
FT                   Rhizobium loti enoyl-CoA hydratase/3-hydroxyacyl-CoA
FT                   dehydrogenase MLL4199 SWALL:Q98EK7 (EMBL:AP003003) (689 aa)
FT                   fasta scores: E(): 5.2e-86, 43.34% id in 699 aa"
FT                   /db_xref="GOA:Q7W714"
FT                   /db_xref="HSSP:1EY3"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W714"
FT                   /protein_id="CAE38018.1"
FT                   /translation="MSVAIAMRGDIGVVTLDSPPVNALGRTLRHGLAQCLEQAYARPDV
FT                   RALLLVSARPGIFSAGADIKEFDQAGSDQDAGLAELIDRIENAPVPVVALLDGAALGGA
FT                   LELALGCHYRLASPRASLGLPEIKLGLLPGAGGTQRLPRLVGARHAVEMVLGGEPVGGE
FT                   TALRCKLADALLSADDTLEQALAWMRNAPGGLARRRVASLPALAPASIAEAARAAAIRP
FT                   VGSAAAREAALACLAAAQGPFDAGRALERESFARLRDGAEARALRYAFFAERPRPPAGD
FT                   VSARRIEQVAVVGAGTMGTGIVICLADAGLPVIWHDVDADRLAQGRAQVCQHFERLAAR
FT                   KRLTSRQAEQRVAAVATTGEMAGIARADLAIEAVFEDMAVKCAVFRELDRVLKPGAILG
FT                   TNTSTLDVDRIAHSTRRPQDVVGLHFFSPAPAMPLLEIVRGAATHADVVAAAQGLARRL
FT                   RKTAVVAGVCDGFIGNRMWHQYLRQAALMVHEGAMPMEVDAALRDWGFAMGPFQVADLA
FT                   GLDVGDSIRLRQRSEMPHRPWPDWLDRVSAAGRLGLKGGSGIHAYPDGGRQPRRDAEVE
FT                   AMIAAASREAGVSRRAIAADEIVERCLHALVVEAARLLEEGIAASATDVDAVFLAGYGF
FT                   PRWRGGPCHSADAMGLPAVVAGLRRRAATAEPEFWQPPGLLARLAAHGGRLQDHGQEGA
FT                   "
FT   misc_feature    complement(136764..137042)
FT                   /note="HMMPfam hit to PF00725, 3-hydroxyacyl-CoA
FT                   dehydrogenase, C-terminal domain, score 3.7e-16"
FT   misc_feature    complement(137046..137600)
FT                   /note="HMMPfam hit to PF02737, 3-hydroxyacyl-CoA
FT                   dehydrogenase, NAD binding domain, score 6.9e-59"
FT   misc_feature    complement(137922..138416)
FT                   /note="HMMPfam hit to PF00378, Enoyl-CoA
FT                   hydratase/isomerase family, score 7.3e-52"
FT   misc_feature    complement(138111..138173)
FT                   /note="PS00166 Enoyl-CoA hydratase/isomerase signature."
FT   CDS             complement(138460..139434)
FT                   /transl_table=11
FT                   /locus_tag="BPP2726"
FT                   /product="putative exported protein"
FT                   /note="Similar to Agrobacterium tumefaciens hypothetical
FT                   protein atu4727 atu4727 or agr_l_312 SWALL:AAL45521
FT                   (EMBL:AE009401) (329 aa) fasta scores: E(): 1.5e-33, 36.95%
FT                   id in 322 aa, and to Rhizobium meliloti hypothetical
FT                   protein ra1058 ra1058 or sma1927 SWALL:Q92Y30
FT                   (EMBL:AE007292) (330 aa) fasta scores: E(): 6e-32, 37.02%
FT                   id in 316 aa"
FT                   /db_xref="GOA:Q7W713"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W713"
FT                   /protein_id="CAE38019.1"
FT                   /translation="MRKKHFVLSFLLGAASLAASGAALAQQAFPTHPIRLIVPFAPGSG
FT                   TDNTARHLAREMEAEFGSPVVVENHPGANSFIAAKMVAAAAPDGYTLLISGSSAMTVNA
FT                   AIFKALPYDPLKDFAPVARLAKGAMGLAVNAQSPYRSVDDLVQAMRQQPGTLNYGSGSA
FT                   AYQITTELFLSMAQAKASHIPYKGAAQALTDLAGRQVDFAFADYAALVPFLRSGKLRLL
FT                   AVSSAERLESEPATPTVAQAGYPGFDMVNWTSAFAPAGTPAPIVDTLSKAIVAIYEREQ
FT                   TRAFLAGTNWESFPVGPAELRRYQVDEIAKWSRAAEIAGIEKQ"
FT   misc_feature    complement(138472..139290)
FT                   /note="HMMPfam hit to PF03401, Uncharacterized protein
FT                   family, UPF0065, score 2.1e-71"
FT   misc_feature    complement(139360..139434)
FT                   /note="Signal peptide predicted for BPP2726 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.991 between residues 25 and 26"
FT   CDS             complement(139465..140265)
FT                   /transl_table=11
FT                   /gene="paaG"
FT                   /locus_tag="BPP2727"
FT                   /product="Putative enoyl-CoA hydratase"
FT                   /EC_number="4.2.1.17"
FT                   /note="Similar to Escherichia coli probable enoyl-CoA
FT                   hydratase PaaG or B1394 SWALL:PAAG_ECOLI (SWALL:P77467)
FT                   (262 aa) fasta scores: E(): 1.6e-27, 36.7% id in 267 aa,
FT                   and to Clostridium acetobutylicum 3-hydroxybutyryl-CoA
FT                   dehydratase Crt or CAC2712 SWALL:CRT_CLOAB (SWALL:P52046)
FT                   (261 aa) fasta scores: E(): 6.8e-25, 35.43% id in 254 aa"
FT                   /db_xref="GOA:Q7W712"
FT                   /db_xref="HSSP:1HZD"
FT                   /db_xref="InterPro:IPR001753"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W712"
FT                   /protein_id="CAE38020.1"
FT                   /translation="MTRFLEVERRGRVCIVRMNRPEARNALTDAEQFQEFEDLVRELNA
FT                   DLDVRAAILTGNGPSFCAGGNVKKMLADYGPDSGPAARIPAKYSTGIQRIPMALAQLDV
FT                   PLIAAVNGAAIGAGCDLACMCDIRIAADDARFAESFVKLGIIPGDGGSWFLPRIIGLAR
FT                   TYEMAFTGDTLDAATALQWNLVSSVVPAAQLMDAACQLAERIAVNPPQQVRFAKRLIRE
FT                   GLHQRLEAMLEFSRLYQTLSHRTADHQEGIAALLEKRPPVFHGR"
FT   misc_feature    complement(139696..140226)
FT                   /note="HMMPfam hit to PF00378, Enoyl-CoA
FT                   hydratase/isomerase family, score 1e-47"
FT   CDS             complement(140294..141052)
FT                   /transl_table=11
FT                   /gene="caiD"
FT                   /locus_tag="BPP2728"
FT                   /product="Putative carnitinyl-CoA dehydratase"
FT                   /EC_number="4.2.1.-"
FT                   /note="Similar to Rhizobium loti carnitine racemase MLL6015
FT                   SWALL:Q98AG1 (EMBL:AP003008) (257 aa) fasta scores: E():
FT                   1.6e-28, 40.76% id in 260 aa, and to Escherichia coli
FT                   carnitine racemase CaiD or B0036 SWALL:CAID_ECOLI
FT                   (SWALL:P31551) (297 aa) fasta scores: E(): 1.1e-26, 40.84%
FT                   id in 262 aa"
FT                   /db_xref="GOA:Q7W711"
FT                   /db_xref="HSSP:1EF8"
FT                   /db_xref="InterPro:IPR002345"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W711"
FT                   /protein_id="CAE38021.1"
FT                   /translation="MNTSPTVRFETREQIAIITLNRPDKRNAINLEMRQALIAAWERFE
FT                   NDAALRVAILTGAGERSFSAGRDLSENTDLSQKTFLPILGDNVQASKPVIAAVNGAALG
FT                   GGWFFTQMCDLVVAADHAVFGMPESKVGRAPAWAVWLQGVIPQKLVLELLLTGNPISAQ
FT                   RAAEIGFVNHVVPAAQLMDKAMELARAIVATAPLSAAACKEMVYAAAEMERGAALRTAF
FT                   HILEPLYRSEDAREGALAFREKRAPRWSGR"
FT   misc_feature    complement(140525..141007)
FT                   /note="HMMPfam hit to PF00378, Enoyl-CoA
FT                   hydratase/isomerase family, score 2.6e-44"
FT   misc_feature    complement(140723..140758)
FT                   /note="PS00213 Lipocalin signature."
FT   CDS             complement(141049..142248)
FT                   /transl_table=11
FT                   /locus_tag="BPP2729"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein PA0446 SWALL:Q9I672 (EMBL:AE004482) (407 aa) fasta
FT                   scores: E(): 1.2e-74, 47.94% id in 390 aa, and to Brucella
FT                   melitensis alpha-methylacyl-coa racemase BMEII1019
FT                   SWALL:Q8YB81 (EMBL:AE009734) (415 aa) fasta scores: E():
FT                   7.1e-72, 47.02% id in 387 aa. Note: Also similar to BPP4114
FT                   (410 aa) fasta scores: E(): 1.2e-70, 50.882% identity in
FT                   397 aa overlap"
FT                   /db_xref="GOA:Q7W710"
FT                   /db_xref="HSSP:1PQY"
FT                   /db_xref="InterPro:IPR003673"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W710"
FT                   /protein_id="CAE38022.1"
FT                   /translation="MPMDGIRVLDLSRVLAGPWCTQMLADFGADVIKIERPGQGDDSRA
FT                   WGPPFYESADGHERVSAYFCAANRGKRSVCLDLESEADRQALRELALRSDVLVENFKAG
FT                   SLARHGLDYATLSALNPRLVYCSITGYGQTGPYAARPGYDSIIQAVGGMMSVTGLPDDA
FT                   AGGGPQKTGIPIIDLMTGVYACCGVLMALREREARGQGQHLDLSLMDVQVSALSTLAAN
FT                   FLACGQAPQRNGNEHPTVVPGDAVQCLDGPLMLMVGNDRQFQRLCRHLDRESLARDPRY
FT                   ATNELRVQGKNALMAQLREAFRGQTRQYWLERLLAEGIPCGPIQTVAEVLADPHVRHRA
FT                   LVAAAPDPVFGEIRAMGSALRMSRTPARHGRAPTVLGEHTEAVLSSLASSRLQSNPQTK
FT                   "
FT   misc_feature    complement(141448..142029)
FT                   /note="HMMPfam hit to PF02515, CAIB/BAIF family, score
FT                   5.7e-65"
FT   CDS             complement(142293..143264)
FT                   /transl_table=11
FT                   /locus_tag="BPP2730"
FT                   /product="putative exported protein"
FT                   /note="Similar to Rhizobium meliloti hypothetical protein
FT                   RA1058 or SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa)
FT                   fasta scores: E(): 1e-50, 48.13% id in 322 aa, and to
FT                   Agrobacterium tumefaciens hypothetical protein ATU4727 or
FT                   AGR_L_312 SWALL:AAL45521 (EMBL:AE009401) (329 aa) fasta
FT                   scores: E(): 7.2e-49, 48.12% id in 320 aa"
FT                   /db_xref="GOA:Q7W709"
FT                   /db_xref="InterPro:IPR006311"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W709"
FT                   /protein_id="CAE38023.1"
FT                   /translation="MNRRDALGALAALASTTWLGRAAAAKPYPQRPVTLIVPYSPGGAT
FT                   DNVARVIAEHLQARLGQPVIIDNRAGANGRIGTLAVARAAPDGYVLLLGGIGPITIAPH
FT                   LEKVPYDPFKDFAPVSLLVKNDVVLLVNPAVPARKPEELIALLKAEPGKFNYASSGTGG
FT                   PFHLSGELFKSMAGVEMTHVPYKGDGPALVDLMAGNVQVMFTTISASAAHIQAGKAIAL
FT                   ASAGEVRSSQMPDLPTLAESALPGFASETWQVLFAPGGTPAPTIDALQAGLAGAMRDAR
FT                   LRQALQAQGNSVVASDVPACAQFVRDEYEKWGNVVRKSGLAA"
FT   misc_feature    complement(142302..143123)
FT                   /note="HMMPfam hit to PF03401, Uncharacterized protein
FT                   family, UPF0065, score 7.5e-99"
FT   misc_feature    complement(143190..143264)
FT                   /note="Signal peptide predicted for BPP2730 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.502 between residues 25 and 26"
FT   CDS             143411..144307
FT                   /transl_table=11
FT                   /locus_tag="BPP2731"
FT                   /product="Putative LysR-family transcriptional regulator"
FT                   /note="Similar to Pseudomonas aeruginosa probable
FT                   transcriptional regulator PA5029 SWALL:Q9HUE0
FT                   (EMBL:AE004916) (301 aa) fasta scores: E(): 6.2e-36, 39.79%
FT                   id in 289 aa, and to Bacillus subtilis als operon
FT                   regulatory protein AlsR SWALL:ALSR_BACSU (SWALL:Q04778)
FT                   (302 aa) fasta scores: E(): 3.5e-31, 32.63% id in 285 aa"
FT                   /db_xref="GOA:Q7W708"
FT                   /db_xref="HSSP:1IXC"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W708"
FT                   /protein_id="CAE38024.1"
FT                   /translation="MDLKQMRYFVAVAEERSFSRAAERLHISQPPLSQQIKALEEELNA
FT                   PLFHRLPRGISLTAAGAALLKSSRAILANVRLAAQETTQIAAGMLGTVRMGTVSSALAH
FT                   LVPYILTQVKRSMPGSKVELTEMSSREQTLAVLRDELDIGLVHTPIDTADLRTRQILRE
FT                   PFYAAVPSQHPLASREAVPVAELASEEFVFFPRTLASGLFDKMVSLCMNAGFSPKIHHT
FT                   ARHQSTMLQMVAMGLGVTIVPRSLQRIYKGSAVFLPLTGTPHYLELSLIWRESTANGLV
FT                   ERLIGGLEPLRDFDSLP"
FT   misc_feature    143417..143596
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family, score 1.1e-32"
FT   misc_feature    143459..143551
FT                   /note="PS00044 Bacterial regulatory proteins, lysR family
FT                   signature."
FT   misc_feature    143666..144289
FT                   /note="HMMPfam hit to PF03466, LysR substrate binding
FT                   domain, score 3.7e-42"
FT   CDS             144398..145336
FT                   /transl_table=11
FT                   /locus_tag="BPP2732"
FT                   /product="Putative short chain dehydrogenase"
FT                   /note="Similar to Rhizobium meliloti putative
FT                   oxidoreductase protein R01692 or SMC00264 SWALL:Q92PP4
FT                   (EMBL:AL591788) (267 aa) fasta scores: E(): 6.4e-36, 49.23%
FT                   id in 260 aa, and to Agrobacterium tumefaciens
FT                   dehydrogenase ATU4825 or AGR_L_117 SWALL:AAL45619
FT                   (EMBL:AE009411) (271 aa) fasta scores: E(): 3.5e-34, 47.36%
FT                   id in 266 aa"
FT                   /db_xref="GOA:Q7W707"
FT                   /db_xref="HSSP:1GZ6"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W707"
FT                   /protein_id="CAE38025.1"
FT                   /translation="MLPRPIEYTNFRCDELISVKRKYGEPLYLQRGPAGSIGKRKTMPS
FT                   NVLENKIAIVVGAGQTPGSTMGNGRATAIAFARAGASVVAVDRDMASAGETAGLILAEG
FT                   GQAMAVQADITSEAAIVAMVRQVMETHGRIDILHNNVGIAGAGGDAPVEDISAEAFDLL
FT                   ANLNLKGMMLTCKHVLPAMRAQRSGCVLNVASTAAYALYPNVAYKATKMGVLGLTQHIA
FT                   MTYAEHGVRANAILPGLIDTPMVIEARVRLTGKPREQIVAERNAMVPLRGRMGTSWDVA
FT                   HAAVFLASDQAGFITGVQLPVDGGALARLGP"
FT   misc_feature    144542..145315
FT                   /note="HMMPfam hit to PF00106, short chain dehydrogenase,
FT                   score 4.3e-58"
FT   CDS             145481..146497
FT                   /transl_table=11
FT                   /locus_tag="BPP2733"
FT                   /product="Putative exported protein"
FT                   /note="Similar to Rhizobium meliloti hypothetical protein
FT                   RA1058 or SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa)
FT                   fasta scores: E(): 1.9e-38, 40.74% id in 324 aa, and to
FT                   Agrobacterium tumefaciens hypothetical protein ATU4727 or
FT                   AGR_L_312 SWALL:AAL45521 (EMBL:AE009401) (329 aa) fasta
FT                   scores: E(): 4.7e-37, 39.63% id in 328 aa"
FT                   /db_xref="GOA:Q7W706"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W706"
FT                   /protein_id="CAE38026.1"
FT                   /translation="MPDHHPEDVAAPRRRALKTLAAACSLTLAPLAALSPAHAADAFPA
FT                   KPITLVAPFAAGGSTDMLARVVAKALAAELGQSVIVENKGGAGGTIGAAYVARAAADGY
FT                   TLLLSNVTLTSAPALYKNMSYDFSKDMSAISLLGQVPCVLEINKDLPVKDGKAFLDYLR
FT                   ANDGKLYYGSSGVGAALHMATASFLSAAGLSAIHVPYKGTGPMMVDLIAGNVQFAIDTS
FT                   GSASAQVRGGNVRGVAVTSRERDPAWPGVPTLRELGVPFEMTIWYGISAPAGVPEPVRR
FT                   KLHAAIEKATRTDEVRTAYQSMGMQVDTRGGKEFEQVIAEDTARWITLVKDAGINPS"
FT   misc_feature    145481..145597
FT                   /note="Signal peptide predicted for BPP2733 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.995) with cleavage site
FT                   probability 0.992 between residues 39 and 40"
FT   misc_feature    145667..146485
FT                   /note="HMMPfam hit to PF03401, Uncharacterized protein
FT                   family, UPF0065, score 3.2e-94"
FT   CDS             146577..146996
FT                   /transl_table=11
FT                   /locus_tag="BPP2734"
FT                   /product="Conserved hypothetical protein"
FT                   /note="Low similarity to Thauera aromatica BbsA
FT                   SWALL:Q9KJF4 (EMBL:AF173961) (144 aa) fasta scores: E():
FT                   4.7e-05, 26.56% id in 128 aa"
FT                   /db_xref="InterPro:IPR002878"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W705"
FT                   /protein_id="CAE38027.1"
FT                   /translation="MQETSPATGGQQYADDALPIEDLKEAPLPPFEVKDTVVYLRGSRS
FT                   RSSGSMAFPEREVCLQTGARDMEPFLFGPDATLYSYTTVHVSSARPVPYTLGYVDFPNG
FT                   VRVLAHVLADPAQPLHCGQSVRLRADGERWFVTPA"
FT   CDS             147016..148158
FT                   /transl_table=11
FT                   /locus_tag="BPP2735"
FT                   /product="Putative thiolase"
FT                   /note="Similar to Thauera aromatica putative
FT                   benzoylsuccinyl-CoA thiolase BbsB SWALL:Q9KJF3
FT                   (EMBL:AF173961) (385 aa) fasta scores: E(): 1.7e-57, 45.38%
FT                   id in 379 aa, and to Pyrobaculum aerophilum acetyl-CoA
FT                   C-acyltransferase PAE2471 SWALL:Q8ZV38 (EMBL:AE009878) (379
FT                   aa) fasta scores: E(): 6.1e-37, 36.01% id in 386 aa"
FT                   /db_xref="GOA:Q7W704"
FT                   /db_xref="InterPro:IPR002155"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W704"
FT                   /protein_id="CAE38028.1"
FT                   /translation="MSKVYIAGAAMIPMGKHRQSSYSGLAVPAVLNALRSAGIAPRDVE
FT                   AVVCGHAFGGMLTGQRIVKEMGIGAVPVFNVDNACSGGASALHLAYKDIQAGIRDIVLV
FT                   IGVDKLTQFGGGTLPLVAEDPEVRLGIVMPAVYAMRAQRYLYERDATVADLAQVSVKAR
FT                   RHGARNPYAQFRSEVTVDEVLDSRPICDPLTLLQCCPTGDGAAAVIMVSEAGRRKLAAP
FT                   AVRVAASVVHSGQVTAGYRDMLNPEISTDSARDAYEAAGFGPQDLDVVELHDAFSIAEL
FT                   VYYEALGLCPRGESAAFLRCGQSTYGGQVVVNPSGGLLSKGHPVGASGVAQAVEVYWHL
FT                   TGQAGERQVPGARRALSHVTGGGIAGLDHGACTVHLYEAV"
FT   misc_feature    147016..147657
FT                   /note="HMMPfam hit to PF00108, Thiolase, N-terminal domain,
FT                   score 3.6e-08"
FT   misc_feature    147679..148125
FT                   /note="HMMPfam hit to PF02803, Thiolase, C-terminal domain,
FT                   score 1.1e-18"
FT   misc_feature    147952..148002
FT                   /note="PS00737 Thiolases signature 2."
FT   CDS             148196..149422
FT                   /transl_table=11
FT                   /locus_tag="BPP2736"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Brucella melitensis alpha-methylacyl-CoA
FT                   racemase BMEII1019 SWALL:Q8YB81 (EMBL:AE009734) (415 aa)
FT                   fasta scores: E(): 1.6e-49, 38.27% id in 405 aa, and to
FT                   Thermoplasma volcanium L-carnitine dehydratase TV1186 or
FT                   TVG1215416 SWALL:Q979H5 (EMBL:AP000995) (399 aa) fasta
FT                   scores: E(): 7.4e-49, 36.7% id in 395 aa"
FT                   /db_xref="GOA:Q7W703"
FT                   /db_xref="HSSP:1PQY"
FT                   /db_xref="InterPro:IPR003673"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W703"
FT                   /protein_id="CAE38029.1"
FT                   /translation="MHEVQQQSPAPAAKPLAGYRVLDLTTFLSGPFCTQILADLGAEVI
FT                   KVEAPDGDSSRHIPPHFVDGDSAYYLGINRDKKSLAVDMKQPEGLALVKSLIVRSHVVV
FT                   ENYRPGVAARIGLDIAALMAQHPSLVWASISGFGQVGPLRDRPAYDMIVQAMSGVMSLT
FT                   GEAGRPAVRLGIPAGDLAAGMYAAIAVNAALADAARGGRGRHIDISMLDCQLAMLSYQS
FT                   TYALVAGVTPQRQAARHDSIPTYRSFLAGDGRELVVTANTERMWKGLCEALGLRELAQD
FT                   ARFCDAEMRLQNREPLWDLLEAAFLARPAAEWIEPLAANGVPVALIKTVPEALSEARAS
FT                   GRGMVMPLRRPGGPEIEVVGNPIKFLGEAEPPARYPPRLGEDAPAILAQWLGWSEQEIQ
FT                   AMQARKVVM"
FT   misc_feature    148433..149002
FT                   /note="HMMPfam hit to PF02515, CAIB/BAIF family, score
FT                   3.2e-53"
FT   CDS             149574..150401
FT                   /transl_table=11
FT                   /locus_tag="BPP2737"
FT                   /product="Putative transcriptional regulatory protein"
FT                   /note="Similar to Bacillus halodurans transcriptional
FT                   regulator BH2137 SWALL:Q9KAZ9 (EMBL:AP001514) (251 aa)
FT                   fasta scores: E(): 4.1e-13, 26.5% id in 249 aa, and to
FT                   Thermotoga maritima transcriptional regulator, IclR family
FT                   TMm0065 SWALL:Q9WXS0 (EMBL:AE001693) (246 aa) fasta scores:
FT                   E(): 3.9e-11, 23.69% id in 249 aa"
FT                   /db_xref="GOA:Q7W702"
FT                   /db_xref="InterPro:IPR005471"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W702"
FT                   /protein_id="CAE38030.1"
FT                   /translation="MGTMAKTDNTLGTVARVVALLRILAERSNRVTLSDLAAELALAPS
FT                   TIHRLLALLKDEGLVARDPVTKMYYCDVEFVRIASLVVDSSQIKDLAAPLLQSLVERFN
FT                   ETTLLCLYLAQQRRYTIVSVHHGTELLRYDVKENTPLQMAWGATARSILAFLPQDDIDR
FT                   ILAEAGPSVTGADVADKTVHKDLAQIRKRGYAVTKGQRIAGSIGLGAPFFGVDGNVLGS
FT                   LCLTIPQGRFNARREAEYTQALIEHAARLSHSLGYVAPSEAKPRKPAAAARRA"
FT   misc_feature    149778..150335
FT                   /note="HMMPfam hit to PF01614, Bacterial transcriptional
FT                   regulator, score 4.3e-08"
FT   CDS             complement(150341..150982)
FT                   /transl_table=11
FT                   /locus_tag="BPP2738"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1677"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W701"
FT                   /protein_id="CAE38031.1"
FT                   /translation="MSDAQAEWAAHICPDAGAALAALPPACRIVYLADGQAPALGRAVR
FT                   ALAADLVVGLSLDYPPGLDPRERGAAAPDTELEDALLARLAGFAAIARRWDRPLRTVGC
FT                   HGALALDVADDERTTQVVARMLQRYDPALSMAVPAGRRGIAVAHHCGIAVVREAWARAP
FT                   SSGAADMSSVRVDRYRLCLDAGAPGLSPLPAQARRAAAAGFRGFASDGAT"
FT   CDS             complement(150979..152373)
FT                   /transl_table=11
FT                   /locus_tag="BPP2739"
FT                   /product="probable sulfatase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1676"
FT                   /db_xref="GOA:Q7W700"
FT                   /db_xref="HSSP:1E33"
FT                   /db_xref="InterPro:IPR017849"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W700"
FT                   /protein_id="CAE38032.1"
FT                   /translation="MSQVTQHPNVVLILADNLGWGELGCYGGGAIRGAPTPRIDALAAQ
FT                   GTQFLNFNVESDCVPTRSALMTGRHPVRTGAMQSVPAGLPQGLVPWERTLAQAFSEQGY
FT                   ATAMYGKWHLGDKEGRYPKDRGFDEWYGIPRTTNESMFMEAVGFDPDVVEVPYVMEGRK
FT                   GSPAERRERYDLEMRRRIDEVLTQRSCEFIGRHAGKAPFFLYVPLTQLHFPTIPHREFE
FT                   GRTGKGDFADSLVEMDARIGQILDAVDQHGIADDTVFIFASDNGPEYRRPWRGSAGMWT
FT                   GTYHTAMEGALRVPLIVRWPGKVPAGRQTNEIVHVVDLFPTLAGIAGLQVPQDRPIDGV
FT                   DQSAFLLGREEKSAREGFVYYIKNELRAAKWRDWKMHFVWEVEPNAGPNHLETPYVFNL
FT                   MQDPKEETDVNTMQGWVRGPIRRMVNAFQASLKSYPPIPPGAPDDYAPSYDMTPPAAKD
FT                   GGQEAP"
FT   misc_feature    complement(151165..152352)
FT                   /note="HMMPfam hit to PF00884, Sulfatase, score 5.8e-88"
FT   CDS             complement(152388..153407)
FT                   /transl_table=11
FT                   /locus_tag="BPP2740"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1675"
FT                   /db_xref="GOA:Q7W6Z9"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6Z9"
FT                   /protein_id="CAE38033.1"
FT                   /translation="MQPNPYTQVFRYADEKGKRMKTVLRILLLGAGLLGAAAASAEWPA
FT                   DQPIKIIVPQAAGGTNDTVARLMGVELGKALGQTVVVENRPGASGAIGMQLASRSPADG
FT                   YTLAIASDTASILSATRKMDWRLDHDMAGVAMVGDQPIGVAVSMRAPYASLDELLAAAR
FT                   KEPGTIAFGTSGLGTSQHIVGEWLTHLAGVQMIHVPYKGGGQAVTDLVSGTTPAAVLGF
FT                   APLLGQARSGGIRIVAVTTAERNPAMPEVPTLTELGYSQITRSQWVGVVAPRDTPPAIV
FT                   KRLSDAMAAIGAQPAIQDKLREIGLTPKSMDAAQFDAFIHKDVADWGRLVTELNIKLD"
FT   misc_feature    complement(152400..153218)
FT                   /note="HMMPfam hit to PF03401, Uncharacterized protein
FT                   family, UPF0065, score 2e-77"
FT   misc_feature    complement(153285..153407)
FT                   /note="Signal peptide predicted for BPP2740 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.994) with cleavage site
FT                   probability 0.836 between residues 41 and 42"
FT   CDS             153434..154420
FT                   /transl_table=11
FT                   /locus_tag="BPP2741"
FT                   /product="probable LysR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1674"
FT                   /db_xref="GOA:Q7W6Z8"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6Z8"
FT                   /protein_id="CAE38034.1"
FT                   /translation="MITNTFHSPSAMVQRSRAALSHLKFRHIALIQYLLQEGTLRKAAR
FT                   RLSISQPAATAMLSDIENLLGVQLFTRSRQGVAPTAQTLALAPRLCILMNDFDELGAML
FT                   DRLDTGEHEVLRVGVVPQAFTVLLPRAIEGFRQAGGCHLHTVEGSAQDLLAQLLAGEQD
FT                   CVLGRLPPDVAKLGRDIASLTFVNLYEDDVCVVCGPDHPAARLKKPGYARLAQCDWVLQ
FT                   RISSSVRQALTEAFLRQGLLLPHPVVETPTYTQALDIVAATRLLTAAPRHTAMAHARSG
FT                   RVKVLDIALGVAPMQVCLILRKSAETHPQIVRFRSVFEAMPMRFPDA"
FT   misc_feature    153506..153685
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family, score 2.7e-11"
FT   misc_feature    153548..153640
FT                   /note="PS00044 Bacterial regulatory proteins, lysR family
FT                   signature."
FT   misc_feature    153755..154399
FT                   /note="HMMPfam hit to PF03466, LysR substrate binding
FT                   domain, score 1.8e-30"
FT   CDS             154539..155162
FT                   /transl_table=11
FT                   /gene="gst"
FT                   /locus_tag="BPP2742"
FT                   /product="glutathione S-transferase"
FT                   /EC_number="2.5.1.18"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1664"
FT                   /db_xref="GOA:Q7W6Z7"
FT                   /db_xref="HSSP:1N2A"
FT                   /db_xref="InterPro:IPR012335"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6Z7"
FT                   /protein_id="CAE38035.1"
FT                   /translation="MSRWTFYTAPGTCALATHIALHEAGADFDLVKLDFGATQQQSPDY
FT                   LRVNPKGRVPALATEHGVLTENPALLAFIAQSFPQAQLAPLGDPFAFARMQELANYLAS
FT                   TAHVAHAHKRRGARWADDPAAHEAMRAKIPENMTAIAGYLESQIVGPWALGERFSVVDG
FT                   YLYTVGSWMEGDSVDMTRFPKLADYLARVGARPAVQRALAEMNG"
FT   misc_feature    154539..154766
FT                   /note="HMMPfam hit to PF02798, Glutathione S-transferase,
FT                   N-terminal domain, score 6.8e-12"
FT   CDS             155276..155587
FT                   /transl_table=11
FT                   /locus_tag="BPP2743"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1663"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6Z6"
FT                   /protein_id="CAE38036.1"
FT                   /translation="MEFIETPIFTQLITALLSDEEYSRLQQLLIDNPERGDLLRGGGGI
FT                   RKMRYGRQGTGKRGGIRVIYYWISQDCQIYMLAAYAKSKKINLTPDEIAALRELVKEL"
FT   CDS             155590..155889
FT                   /transl_table=11
FT                   /locus_tag="BPP2744"
FT                   /product="putative DNA-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1662"
FT                   /db_xref="GOA:Q7W6Z5"
FT                   /db_xref="InterPro:IPR001387"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6Z5"
FT                   /protein_id="CAE38037.1"
FT                   /translation="MKKDNTVFNDLQASLKQAVAIRQGKMPPSRVFKVETVDVKATREK
FT                   THMSQTEFAKAIHVSVRTLQNWEQGHRNPTGPAVALLKIVASAPDIAVRALRTA"
FT   misc_feature    155704..155877
FT                   /note="HMMPfam hit to PF01381, Helix-turn-helix, score
FT                   3.5e-08"
FT   CDS             complement(join(155903..158119,158121..158456))
FT                   /pseudo
FT                   /transl_table=11
FT                   /gene="sphB2"
FT                   /locus_tag="BPP2745"
FT                   /product="autotransporter (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1660"
FT                   /note="Similar to Agrobacterium tumefaciens hypothetical
FT                   protein ATU3276 or AGR_L_3085 SWALL:AAL44092
FT                   (EMBL:AE009257) (1052 aa) fasta scores: E(): 5.6e-52,
FT                   35.56% id in 748 aa, and to Rhizobium loti hypothetical
FT                   protein MLL1534 SWALL:Q98KC9 (EMBL:AP002997) (1008 aa)
FT                   fasta scores: E(): 7.2e-51, 35.12% id in 746 aa"
FT                   /db_xref="PSEUDO:CAE38038.1"
FT   misc_feature    complement(158385..158456)
FT                   /note="Signal peptide predicted for BPP2745 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.994 between residues 24 and 25"
FT   CDS             158625..159299
FT                   /transl_table=11
FT                   /locus_tag="BPP2746"
FT                   /product="response regulatory protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1659"
FT                   /db_xref="GOA:Q7W6Z4"
FT                   /db_xref="InterPro:IPR000792"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6Z4"
FT                   /protein_id="CAE38039.1"
FT                   /translation="MQTCTPTRPAGSLRIAIVEDDPAFRHAVVAVIAHEPGMSVLAQAQ
FT                   TCAQARAMLQGPPADVLLVDLGLPDGSGIDVIRQARRLWDDCDIMVNTMFGDEAHVMRS
FT                   IEAGACGYLLKDSEPAGIVRDIRALRDGGSPINPLIARQLLDRLRQGLPAAAPPAAMAL
FT                   SPREHQVLERITLGYTYDEIARDLEVSRHTVQTFVRRIYRKLQVHSKVDAINAARGLCP
FT                   DG"
FT   misc_feature    158661..159026
FT                   /note="HMMPfam hit to PF00072, Response regulator receiver
FT                   domain, score 6e-23"
FT   misc_feature    159102..159293
FT                   /note="HMMPfam hit to PF00196, Bacterial regulatory
FT                   proteins, luxR family, score 1.1e-13"
FT   misc_feature    159153..159236
FT                   /note="PS00622 Bacterial regulatory proteins, luxR family
FT                   signature."
FT   CDS             159292..161151
FT                   /transl_table=11
FT                   /locus_tag="BPP2747"
FT                   /product="probable two-component sensor histidine kinase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1658"
FT                   /db_xref="GOA:Q7W6Z3"
FT                   /db_xref="InterPro:IPR003594"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6Z3"
FT                   /protein_id="CAE38040.1"
FT                   /translation="MAERRRLARRAWALLAWLWLALPAAVLAEPRHFTAAQFLLQDEAA
FT                   AAAPDRVPALGPPGDWQSVALPHAGLQRRVVPDPQAGDAALAWYRLDLDASGVDDPVLY
FT                   LPRWQTVGRLAVYGDGKLLYRSGGSAQWSGFNRPVWLPLAAGGPPPATLLLRISSLDGA
FT                   GAGLSTAWVGAAGELRWRYELRRWLQQDLPYLASAVFLAIGLFALGVWAVRRKESIYGL
FT                   FFAASVVFYLRCLHYHAGPFQLLLDDEWFSWLTITSVGWLAIASYFFAFRLHGRTYPRS
FT                   ERAMLAGMGALTAAMLPVWQIHPHLVLLAPLAYLGITAVSLFACLLAVWGAWRAGSRDG
FT                   LALACWNLAAIPVAVHDMLLQNYRLSMEHVYLLPYTGIGMFVIFLYVAYRRYLNALAGA
FT                   AGAQATLQRRLAERERELEHSHRRLRDVERIRILAGERERLMQDMHDGLGSSLVSALRM
FT                   VQHGNSSEGAVAQVLQECLDDLRLTIDSLEPAQTDLALLLATLRFRLGPRLQAAGLAID
FT                   WRVGPLPPVSWLTPPAALHVLRILQEVFTNILKHARARRLTVSTRLEPAHAVITIIDDG
FT                   AGFCGPRQAPAASRPGRGLTGMQARARHRGAPSLARGGARQPF"
FT   misc_feature    159292..159375
FT                   /note="Signal peptide predicted for BPP2747 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.983 between residues 28 and 29"
FT   misc_feature    join(159325..159378,159871..159930,159943..160011,
FT                   160039..160104,160141..160197,160225..160293,
FT                   160312..160371,160399..160458)
FT                   /note="8 probable transmembrane helices predicted for
FT                   BPP2747 by TMHMM2.0 at aa 12-29, 194-213, 218-240, 250-271,
FT                   284-302, 312-334, 341-360 and 370-389"
FT   misc_feature    160885..161130
FT                   /note="HMMPfam hit to PF02518, Histidine kinase-, DNA
FT                   gyrase B-, and HSP90-like ATPase, score 0.0084"
FT   CDS             complement(161176..162138)
FT                   /transl_table=11
FT                   /locus_tag="BPP2748"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1657"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6Z2"
FT                   /protein_id="CAE38041.1"
FT                   /translation="MRPAARRLGSWLMALAACAAASAAWGQQGLRLSKDDLQKRANGVL
FT                   ALMSFSIVPDITTSALNIAGGGGSTSGSTEFYMTQLGGGDTISKSVPLYLEGVLAASRY
FT                   DPTFIATQGVESRRIPAKWNSVSATGGIGWDFPLTDELKLRPIFNVALGNVTSDLRAAS
FT                   WYVGRQTGQDIDFLDRGSLNAYGLGGSLMLDYEHYRPGYEVDVELRYSEIRLRSFDSSA
FT                   AVRGQATAQSANLWARYRAPTGATLLQRPLRYVLELTHSEFLGDQRGILGFDRLTSVGA
FT                   GLELDSSAYDVFITRTRLVGRYVFGNNVSGFSVGLAVSF"
FT   misc_feature    complement(162061..162138)
FT                   /note="Signal peptide predicted for BPP2748 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.609 between residues 26 and 27"
FT   CDS             complement(join(162141..162272,162274..164688))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP2749"
FT                   /product="putative membrane protein (Pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1634"
FT                   /db_xref="PSEUDO:CAE38042.1"
FT   misc_feature    complement(join(163282..163347,163369..163434,
FT                   163447..163512,163552..163617,163711..163776,
FT                   163798..163863,163894..163959,164050..164115,
FT                   164128..164193,164233..164298,164344..164409,
FT                   164449..164514,164560..164625))
FT                   /note="13 probable transmembrane helices predicted for
FT                   BPP2749 by TMHMM2.0 at aa 21-43, 58-80, 93-115, 130-152,
FT                   165-187, 191-213, 243-265, 275-297, 304-326, 357-379,
FT                   392-414, 418-440 and 447-469"
FT   CDS             complement(164767..166395)
FT                   /transl_table=11
FT                   /locus_tag="BPP2750"
FT                   /product="putative arylsulfatase protein"
FT                   /EC_number="3.1.6.1"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1635"
FT                   /db_xref="GOA:Q7W6Z1"
FT                   /db_xref="HSSP:1E33"
FT                   /db_xref="InterPro:IPR017849"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6Z1"
FT                   /protein_id="CAE38043.1"
FT                   /translation="MNARRWLTAALVAAGGLAVAAGAHAQAQGDAAKPQASGKPPNILV
FT                   IFGDDIGQANISAYTRGVVGYTTPNIDRIAKEGIIFTDYYAENSCTAGRSSFITGQSPR
FT                   RTGLSKVGVPGVDVGLQDRDVTIAQALKAHGYVTAQFGKNHLGDRDEYLPTKHGFDEFF
FT                   GNLYHLNAEEEPERPYWPKDPKDPVVKAYKPRGVIKASADGKIEDTGALTSKRMETIDD
FT                   ETVGAALDYIDKHGKGDKPFFVWMNTTRMHIYTHIRPEHQGKSGMPGNDYADGMWEHDQ
FT                   DVGKLLKKLDDLGIADNTIVVYTTDNGPNQFSWPDAATTPFRNEKDSNWEGAFRVPAMV
FT                   RWPGHIPAGVTRNGMVSGLDWFPTLLAAAGEGDIKEKLLKGWAAGNGGKNYKVHLDGYN
FT                   QLEYLTGKSDKSARNEFYYFNDDGLLVAMRMENWKIVFCEQRAPGGFDVWKDPFVCLRV
FT                   PKVFNLRMDPYERADIVSDQYYDWLSKNAYLAFIGSAKASEFLETFVEWPPSQRPASFS
FT                   VDQVQEEVDRKIMQYFEEQKKKQGK"
FT   misc_feature    complement(164992..166275)
FT                   /note="HMMPfam hit to PF00884, Sulfatase, score 1.1e-60"
FT   misc_feature    complement(166321..166395)
FT                   /note="Signal peptide predicted for BPP2750 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.956 between residues 25 and 26"
FT   CDS             complement(166445..167479)
FT                   /transl_table=11
FT                   /locus_tag="BPP2751"
FT                   /product="putative nonspecific acid phosphatase precursor"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1636"
FT                   /db_xref="InterPro:IPR017909"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6Z0"
FT                   /protein_id="CAE38044.1"
FT                   /translation="MNRHTTESWRRWAARLGAAAMALLLAACAAPRQQAASVDELPSWN
FT                   DGPSRTAIVEFVRAVTRSGGPDFVAADERIAVFDNDGTLWSEQPMYFQMLFALDRVKSM
FT                   APRHPDWARRQPFKAALQDDHAALAKGGDAALMKIVGATHTDMSTDTFTRSVRYWASTA
FT                   RHPRFDRLYTELTFAPMRELLDYLRAHGFKTYIVSGGETEFMRPWTQQAYGIPPEQVIG
FT                   SSFVTTYGVRDGEPTLWRHGKLEFNDDGPGKPVAIQRYIGRRPILAFGNSDGDLQMLQW
FT                   TAAGDGKRFAGLVHHTDAQREWAYDRDSRIGRLDRALDEARRQDWTVVDMKTEWKRVYA
FT                   FEQP"
FT   misc_feature    complement(166601..167263)
FT                   /note="HMMPfam hit to PF00702, haloacid dehalogenase-like
FT                   hydrolase, score 0.013"
FT   misc_feature    complement(167168..167197)
FT                   /note="PS00339 Aminoacyl-transfer RNA synthetases class-II
FT                   signature 2."
FT   misc_feature    complement(167375..167479)
FT                   /note="Signal peptide predicted for BPP2751 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.702 between residues 35 and 36"
FT   misc_feature    complement(167387..167443)
FT                   /note="1 probable transmembrane helix predicted for BPP2751
FT                   by TMHMM2.0 at aa 12-31"
FT   misc_feature    complement(167396..167428)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(join(167482..167493,167493..168806))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP2752"
FT                   /product="putative exported protein (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1637"
FT                   /db_xref="PSEUDO:CAE38045.1"
FT   variation       complement(167492)
FT                   /note="(C)1 in parapertussis; (C)2 in pertussis and
FT                   bronchiseptica"
FT   misc_feature    complement(167850..167915)
FT                   /note="1 probable transmembrane helix predicted for BPP2752
FT                   by TMHMM2.0 at aa 297-319"
FT   misc_feature    complement(168426..168449)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    complement(168738..168806)
FT                   /note="Signal peptide predicted for BPP2752 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.784 between residues 23 and 24"
FT   CDS             complement(168803..170308)
FT                   /transl_table=11
FT                   /locus_tag="BPP2753"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1638"
FT                   /db_xref="GOA:Q7W6Y9"
FT                   /db_xref="InterPro:IPR019734"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6Y9"
FT                   /protein_id="CAE38046.1"
FT                   /translation="MDIDLSAFHFLRPWWLLAVPLTALLWWARRGERGAPGRDLRIAPA
FT                   LLPYLVLRTPGSRGPRPIDALALFLALGGVAAAGPAWQRDEPAYLDNVAPLIVALDLSA
FT                   SMDGADVPPTRLEAARRVLRDLAARRAAARTGLIAYAGSSHLVLPPTDDAGLLDLFAQA
FT                   LATGLIERPGRDADGAIALAAQALAAERAGGTLLILTDGADRARMDAVRRQAQAARDMQ
FT                   VLVMAVGVNGIDTQALQELARAAGAALGSLTGGPDDQDWIALHAQAHFRAVQDAQSGPV
FT                   HWKDAGYWLCWPLALLAVRRGWSVAWSAGVLVVAMAGMPQPARADALADAFLTADQQGR
FT                   RAFEHGRYDEAARHFHDPYWKGRAAYEAGDYKAALAAFSTLPSAEGYFYVGNTQTRLHR
FT                   YDAALAAYDRALALKPGWQPAVVNRGIVARLLAAMAQTQQDQPAEPPDQTIADRTAQAG
FT                   KMSQAPVAQAGSEEAWLRNLTLSPARFLRSKFAAEDAAAGARP"
FT   misc_feature    complement(169058..169159)
FT                   /note="HMMPfam hit to PF00515, TPR Domain, score 0.00089"
FT   CDS             complement(join(170299..170364,170367..171305))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP2754"
FT                   /product="putative exported protein (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1639"
FT                   /db_xref="PSEUDO:CAE38047.1"
FT   misc_feature    complement(170481..171035)
FT                   /note="HMMPfam hit to PF00092, von Willebrand factor type A
FT                   domain, score 0.00016"
FT   misc_feature    complement(171225..171305)
FT                   /note="Signal peptide predicted for BPP2754 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.779) with cleavage site
FT                   probability 0.315 between residues 27 and 28"
FT   CDS             complement(171292..171783)
FT                   /transl_table=11
FT                   /locus_tag="BPP2755"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1639A"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6Y8"
FT                   /protein_id="CAE38048.1"
FT                   /translation="MSDALPGLDQLQELPLPAAVPYWPQTWGWAVLAALVLAGAAWAGY
FT                   AGWRRRRRNRYRRQALAELQRLARAAAADPLAARALPGLLKRTALAAGQPAVAPLGGQA
FT                   WLARLAQDAAGAAFPDDSARMLALLAYAPDGAVRALDAPALARLFAASRRWVESHHVAA
FT                   "
FT   misc_feature    complement(171640..171705)
FT                   /note="1 probable transmembrane helix predicted for BPP2755
FT                   by TMHMM2.0 at aa 26-48"
FT   CDS             complement(171780..172721)
FT                   /transl_table=11
FT                   /locus_tag="BPP2756"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1640"
FT                   /db_xref="InterPro:IPR002881"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6Y7"
FT                   /protein_id="CAE38049.1"
FT                   /translation="MPRAAHPVHPPLPELMALEAAVGGLSFVAGQPLGSVLAGLHGSRL
FT                   RGRGLDFAELRRYVPGDDLRQLDPRASLRYGKPYVRAYTEERDRPAMIVADQRMSMYFG
FT                   SVRAFKCAVAARLAALAAWTAYRGGDRVGGLVFDDDGVRAFKPLRSRDRVQALLAEVAR
FT                   ANAGLSAARPERPAGAGLNAALRGALAHAPHDCLVCIVSDFAGADAETLRTLRLLARHN
FT                   DVVAMLVFDPMAQDLPRRGRLVVTQGELQLEIAVGRQRERQPLADFFSGRLREVADLLR
FT                   RSRVPLLSIDTAEDEVVQLRRALGRLQTGARR"
FT   misc_feature    complement(172215..172721)
FT                   /note="HMMPfam hit to PF01882, Protein of unknown function
FT                   DUF58, score 1.3e-07"
FT   CDS             complement(join(172730..173383,173386..173667))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP2757"
FT                   /product="putative regulatory protein (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1641"
FT                   /db_xref="PSEUDO:CAE38050.1"
FT   CDS             complement(173750..174892)
FT                   /transl_table=11
FT                   /locus_tag="BPP2758"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1642"
FT                   /db_xref="GOA:Q7W6Y6"
FT                   /db_xref="InterPro:IPR005532"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6Y6"
FT                   /protein_id="CAE38051.1"
FT                   /translation="MKQQLKIALAMATIVGAAGALGAYVASTSDAPQAPAVRLGDGKAG
FT                   PAGMAWIPGHQFLMGNDHKLSQPNERPAHQVRVSGFWMDVHDVTNAQFRRFVQATGYLT
FT                   TAERKPRWEDLRPQLPPGTPRPDDSQLAPGAMVFVGTRSEVSLRDYSRWWRFVPGASWR
FT                   HPQGPGSGIDGKDDHPVVQVSYEDAQAYARWAGKRLPTEAEWEFAARGGLEQATYTWGD
FT                   ELLPQGQAMANIWDTRQQQPFPVVKDEKVQVGTTPVGSFAPNGYGLYDMAGNVWQWTAD
FT                   WYRADAFRIQAQYREPPLDPAGPADSFDPDDGNVPAAAPKRVTRGGSFLCSDTYCISYR
FT                   ASARRGTDPLNPMSHLGFRTVMTPEQWKLAQARQGRLASR"
FT   misc_feature    complement(174818..174892)
FT                   /note="Signal peptide predicted for BPP2758 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.730 between residues 25 and 26"
FT   CDS             175236..176198
FT                   /transl_table=11
FT                   /locus_tag="BPP2759"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1643"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6Y5"
FT                   /protein_id="CAE38052.1"
FT                   /translation="MRSRFAWRFCNAGLALAALPGAARATEGALGRLVTGTTVQPNAGV
FT                   VSPQPITVLSLGQLYLDGRIGGSREVPVAGKTSLGLDAEMALTLATLMKTWDTGPGRWN
FT                   FASSLTVPYLWLKITATLAGERGRAARESDIASNLFDLNFTPLIAGYHFSETQHLALSL
FT                   SIWAPTGKYDADALANPSLNNWTFIPQVAYTGMFPEHGLQLDAVANVQFYTRNTATDYR
FT                   NAPIFGLELMGRKLFGNGVGAGLIVGTQQQLGPDKGPTADRLNGFEGRDWALGPILTYD
FT                   RKLADQRSLSFSLRWTPTISSTRRLDSDSTVLGTVALIF"
FT   misc_feature    175236..175310
FT                   /note="Signal peptide predicted for BPP2759 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.981 between residues 25 and 26"
FT   CDS             176317..177369
FT                   /transl_table=11
FT                   /locus_tag="BPP2760"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1644"
FT                   /db_xref="GOA:Q7W6Y4"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6Y4"
FT                   /protein_id="CAE38053.1"
FT                   /translation="MRLARARSSPAFSHDNKMETRMRLIRRFAHALAVVGSAGFLAAPA
FT                   AASTGTYPDKPIHLLVAFSTGGVLDTLARTMASELSTRYGQSIVVENRTGASGNIGTDL
FT                   LARAKPDGYTIGMGTIATHGINPALYGERLPYDPVKGFTPLALLAEQTNIVLVNNDLPV
FT                   TSIPTLIEYLRANPGKVAYGSAGNGSSQHLSGQLFKLAAGVELLHVPYRGSVPALTDLV
FT                   SGQVQLMFVDVPAALPFIKSGKVRPIAVTAAHRSSAFPDLPTVAEQGLEGFNVRAWFGV
FT                   LAPAGTPAPIAEKLSADMIAAVQQPAIRERLEALGMDIKTLDGPAFGQFIQDEIARWDE
FT                   IVKRSGTRLE"
FT   misc_feature    176317..176457
FT                   /note="Signal peptide predicted for BPP2760 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.926 between residues 47 and 48"
FT   misc_feature    176530..177357
FT                   /note="HMMPfam hit to PF03401, Uncharacterized protein
FT                   family, UPF0065, score 1.1e-107"
FT   CDS             177416..178174
FT                   /transl_table=11
FT                   /locus_tag="BPP2761"
FT                   /product="probable short-chain dehydrogenase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1645"
FT                   /db_xref="GOA:Q7W6Y3"
FT                   /db_xref="HSSP:1E7W"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6Y3"
FT                   /protein_id="CAE38054.1"
FT                   /translation="MGRLSGRNALITGAAVGIGAAMARRFCAEGASVLLGDIDAERGQA
FT                   LAAELAATGARARFARLDVTDEDSVRQALELAEAEHGPLHILVNNAGGSSLNDRSVVEF
FT                   ALEEFWRAINIDLLGTVLCCRHAIPRIAAAGGGAVVNMGSIAALRGLKGRDAYTAAKGG
FT                   VHALTRSMAVEFAEQRVRCNAIAPGAVLSERMARFIDEDPRVAAAVSRHLLGLPEPDEI
FT                   AAMAVFLASEESRHVTGSIFQIDGGRAAAA"
FT   misc_feature    177416..177484
FT                   /note="Signal peptide predicted for BPP2761 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.819) with cleavage site
FT                   probability 0.574 between residues 23 and 24"
FT   misc_feature    177428..178159
FT                   /note="HMMPfam hit to PF00106, short chain dehydrogenase,
FT                   score 5.3e-75"
FT   misc_feature    177845..177931
FT                   /note="PS00061 Short-chain dehydrogenases/reductases family
FT                   signature."
FT   CDS             178364..179101
FT                   /transl_table=11
FT                   /locus_tag="BPP2762"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1646"
FT                   /db_xref="GOA:Q7W6Y2"
FT                   /db_xref="InterPro:IPR005496"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6Y2"
FT                   /protein_id="CAE38055.1"
FT                   /translation="MVEAIETFHWGAIFQIVLIDILLGGDNAVVIALACRNLPRRQRIK
FT                   GILWGTAGAVLLRVLLIAFALVLLDIPFLKALGCLLLVWIGVKLLAPHEDAHGNITGGT
FT                   SVLAAIRTIILADFAMSLDNVIAIAGAAQNAQADHQLYYVIFGLCVSVPIIVWGSTLVL
FT                   KLIDRFPLVVTLGAGLLGWIAGGMLITDIYVVERWGEPAPMLKLAVEAAGALVVVAAGK
FT                   WLAARRRHARPTHDESASTTPGG"
FT   misc_feature    join(178394..178462,178499..178567,178784..178852,
FT                   178871..178939,178982..179041)
FT                   /note="5 probable transmembrane helices predicted for
FT                   BPP2762 by TMHMM2.0 at aa 11-33, 46-68, 141-163, 170-192
FT                   and 207-226"
FT   CDS             complement(179098..179553)
FT                   /transl_table=11
FT                   /locus_tag="BPP2763"
FT                   /product="Conserved hypothetical protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein PA0474 SWALL:Q9I644 (EMBL:AE004485) (134 aa) fasta
FT                   scores: E(): 2.7e-13, 39.39% id in 132 aa, and to
FT                   Caulobacter crescentus hypothetical protein CC3309
FT                   SWALL:Q9A395 (EMBL:AE005993) (157 aa) fasta scores: E():
FT                   1.2e-06, 32.37% id in 139 aa"
FT                   /db_xref="InterPro:IPR006683"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6Y1"
FT                   /protein_id="CAE38056.1"
FT                   /translation="MAFLQPSLFMNDSIPDGFAPWRPGSPFMAHLADLGTFYVREADDA
FT                   LAVRVGPPHTNMHGIAHGGLLATLADSALGYCISRRAQASVVTVQMSVEYLSAVKPGDW
FT                   LQAQVRIDKQGRRLIYATCLLQVEDRLMLKANAVFAVRAAPAPVSDG"
FT   CDS             179824..180195
FT                   /transl_table=11
FT                   /locus_tag="BPP2764"
FT                   /product="Putative transcriptional regulator"
FT                   /note="Very low similarity to Rhizobium loti hypothetical
FT                   protein MSl6954 SWALL:Q987R0 (EMBL:AP003010) (93 aa) fasta
FT                   scores: E(): 0.0023, 32.58% id in 89 aa, and to Ralstonia
FT                   solanacearum putative transcription regulator protein HipB
FT                   or RSP1252 or RS03197 SWALL:Q8XQH3 (EMBL:AL646083) (88 aa)
FT                   fasta scores: E(): 0.029, 36.98% id in 73 aa"
FT                   /db_xref="GOA:Q7W6Y0"
FT                   /db_xref="InterPro:IPR001387"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6Y0"
FT                   /protein_id="CAE38057.1"
FT                   /translation="MLIRSLLFDLCVSQHFFLGRVYFMPLAAYISMKTLPDVGARFRTL
FT                   RKQARKTQRELAAATGMRQEAISRFEAGSASDFSLNKLLTLLQALDLEFDFKPAVRRPD
FT                   LDDLLAERRGRLDDAKDPS"
FT   misc_feature    179947..180114
FT                   /note="HMMPfam hit to PF01381, Helix-turn-helix, score
FT                   2e-09"
FT   CDS             180192..181538
FT                   /transl_table=11
FT                   /locus_tag="BPP2765"
FT                   /product="Conserved hypothetical protein"
FT                   /note="Similar to Rhizobium loti hypothetical protein
FT                   MLL6953 SWALL:Q987R1 (EMBL:AP003010) (420 aa) fasta scores:
FT                   E(): 5.9e-31, 34.54% id in 411 aa, and to Neisseria
FT                   meningitidis hypothetical protein NMB1761 SWALL:Q9JY37
FT                   (EMBL:AE002525) (417 aa) fasta scores: E(): 2.2e-14, 28.57%
FT                   id in 385 aa"
FT                   /db_xref="InterPro:IPR017508"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6X9"
FT                   /protein_id="CAE38058.1"
FT                   /translation="MKLNVFVHGTRVALLDSPDGFQHRLAYLPETDPARFASLTMPVRA
FT                   EPWRWPTLHPFFQVSLPEGFLLMLLKEQLGPQLGARQLDLLAVVGPNMIGRVQVSAGAT
FT                   LEPAMALESLDPLLHGPASQQVFLELMAQYAASGVSGVVPKFLTPATQALFRKGTIATE
FT                   RHIVKGSSEHQPFVALNEHLCMTAAQGTGIPVARTRVSDDGQVLVVERFDIDPATGRRL
FT                   GFEDFCSLLGLSADEKYDSTWERVARVASDYVRPEGRLQARTQLAITLLLSFALGNADC
FT                   HAKNLALVYDTIDDVRIAPVYDMLTILAYDRYAANPPGMALDGRKSWTMSKALWRYLQQ
FT                   HLGFAPAAQRELVDRVCSAIADTVPQLKAHIRHTPGFEPVGLRMLWEWNEGMKRLSERR
FT                   QIAVPDWVATARDEGLPRPAPAAHFAAQRIGESPLLAPRRRRQPARPPS"
FT   CDS             complement(181585..182325)
FT                   /transl_table=11
FT                   /locus_tag="BPP2766"
FT                   /product="Putative regulatory protein"
FT                   /note="Similar to Streptomyces coelicolor putative gntr
FT                   family regulatory protein sco4019 or 2sc10a7.23
FT                   SWALL:Q9ADN8 (EMBL:AL583945) (230 aa) fasta scores: E():
FT                   1.7e-19, 36.66% id in 210 aa, and to Rhizobium loti
FT                   transcription regulator mlr4761 SWALL:Q98DC7
FT                   (EMBL:AP003004) (247 aa) fasta scores: E(): 1e-18, 34.68%
FT                   id in 222 aa"
FT                   /db_xref="GOA:Q7W6X8"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6X8"
FT                   /protein_id="CAE38059.1"
FT                   /translation="MGAACATIAALLVSHIMKNAKNGRTLNAEVYAQLRAQILTGQFMP
FT                   RQRLKVSQLSEQHGVSLNVVREALNRLAGEQLVELQPQFGFAVRGLSAEDLVDLFEQRG
FT                   VVESLALRQSIARGDLNWQSDVVAAHHRLGGTAVVSPDDPQKLNPEWLARHEEFNLVMM
FT                   RACGSPRLLQIVRQLAEASAIYQRALLPLAAVAAELETEHDDLLQRILDGDADGAVRVL
FT                   LKHMEQTRDAMLPFLVQQEVAEQA"
FT   misc_feature    complement(182062..182238)
FT                   /note="HMMPfam hit to PF00392, Bacterial regulatory
FT                   proteins, gntR family, score 2.6e-09"
FT   CDS             182437..183276
FT                   /transl_table=11
FT                   /locus_tag="BPP2767"
FT                   /product="Putative hydrolase"
FT                   /EC_number="3.1.1.-"
FT                   /note="Similar to Pseudomonas putida
FT                   2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase IpbD
FT                   SWALL:O51858 (EMBL:AF006691) (282 aa) fasta scores: E():
FT                   3.5e-23, 32.17% id in 258 aa, and to Pseudomonas putida
FT                   2-hydroxy-6-oxo-2,4-heptadienoate hydrolase TodF
FT                   SWALL:TODF_PSEPU (SWALL:P23133) (276 aa) fasta scores: E():
FT                   1.1e-22, 31.87% id in 251 aa"
FT                   /db_xref="GOA:Q7W6X7"
FT                   /db_xref="HSSP:1C4X"
FT                   /db_xref="InterPro:IPR000073"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6X7"
FT                   /protein_id="CAE38060.1"
FT                   /translation="MSLPDGYTLSHLPFEGTQCAYLRGGSGPTLLLVHGSGPGASSLGN
FT                   WRAVLPALVRRFDVVAMDLVGFGQSGRKPAAPYFDFDMWVRQVRAMMSHLGEGPIGLVG
FT                   HSLAGALALTVASGNPAVRGVVATGTMGIPFAPNDATRRTWKCPRSRPELVRALQGLIH
FT                   DHSVIDEAYLAVREPVIFAPGYADYFDAMFDAAPATYIAAATLSERTLRGIRCPVTLLH
FT                   GRDDAAFPPAASQRIAEQLADADLVLLAGCSHSVAFERPDVFLAMVHQRFGALPYFL"
FT   misc_feature    182605..183252
FT                   /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold,
FT                   score 5.8e-25"
FT   CDS             183285..184637
FT                   /transl_table=11
FT                   /locus_tag="BPP2768"
FT                   /product="Putative dipeptidase"
FT                   /note="Similar to Caulobacter crescentus xaa-pro
FT                   dipeptidase, putative CC3125 SWALL:Q9A3S7 (EMBL:AE005976)
FT                   (431 aa) fasta scores: E(): 1.3e-27, 29.78% id in 423 aa,
FT                   and to Sulfolobus solfataricus prolidase PepQ-like2 or
FT                   SSO2040 SWALL:Q97WS6 (EMBL:AE006811) (408 aa) fasta scores:
FT                   E(): 2.6e-18, 26.21% id in 370 aa"
FT                   /db_xref="GOA:Q7W6X6"
FT                   /db_xref="InterPro:IPR006680"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6X6"
FT                   /protein_id="CAE38061.1"
FT                   /translation="MKTGYVLKGRVIDGTLGPALEQGAVVTEGERIAWVGPQSGLPAQY
FT                   AGDRHTVVDLPGRTIMPGLIDAHTHISFGESRSEEENALYTPVEFRTAKALWYARKVLQ
FT                   AGVTSAFDAATSYNIAQAVRDAIDTGMFEGPRFTVSGKQLTNHHGLEDSFPNEMAFPPG
FT                   QSAVLVKTREDLVEAIHYQVKDEVDAIKVSGSNDNLITPDALGSSAFTYEEFKIIADET
FT                   HRLGRLCSVHARSRDAALYAAQAGFDNLFHASYIDDEGIEACLKNGCVITPTLTLLVNL
FT                   VEAKQSHAGASSAQAFRQEIEAASVNLRRAYDAGVPLLAGSESGWSPVPYGHWHAREME
FT                   IFVKLLGLTPLQAIHANTLACTRLLARHGHEVGKLEASRLADVLVLPGNPLEDITLLQR
FT                   PSRFDYIFKGGTPVDRTAPAPRVRKWYERTKIFLAGVYEYDQENACGRLVQ"
FT   CDS             184694..185113
FT                   /transl_table=11
FT                   /locus_tag="BPP2769"
FT                   /product="Conserved hypothetical protein"
FT                   /note="Similar to Streptomyces coelicolor hypothetical
FT                   protein SCO6478 or SC9C7.14c SWALL:Q9ZBJ6 (EMBL:AL035161)
FT                   (132 aa) fasta scores: E(): 2.8e-09, 40.65% id in 123 aa,
FT                   and to Rhizobium meliloti hypothetical protein RA1232 or
FT                   SMA2289 SWALL:Q92XL2 (EMBL:AE007308) (130 aa) fasta scores:
FT                   E(): 2e-06, 31.45% id in 124 aa"
FT                   /db_xref="InterPro:IPR006175"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6X5"
FT                   /protein_id="CAE38062.1"
FT                   /translation="MSQAAVQYLNPEGAAPAQGLYSHATRVRAGDLYFVAGQLAVGRDG
FT                   AVAGVGDFEAQFDQVFGNLRDVLAGLGVDFNDVAKFTTYLVHSQDIPRFMRKRAELFPT
FT                   LFAGKAYAPSTLLIVDRLVKEEFLIEVEAVVRARD"
FT   misc_feature    184727..185104
FT                   /note="HMMPfam hit to PF01042, YjgF family, score 6.8e-16"
FT   CDS             185138..186022
FT                   /transl_table=11
FT                   /locus_tag="BPP2770"
FT                   /product="Conserved hypothetical protein"
FT                   /note="Similar to Bacillus subtilis YisK protein
FT                   SWALL:O06724 (EMBL:Y09476) (301 aa) fasta scores: E():
FT                   1.1e-39, 39.8% id in 309 aa, and to Ralstonia solanacearum
FT                   hypothetical protein RSC1824 or RS04254 SWALL:Q8XYD4
FT                   (EMBL:AL646066) (319 aa) fasta scores: E(): 5.1e-34, 40% id
FT                   in 270 aa"
FT                   /db_xref="GOA:Q7W6X4"
FT                   /db_xref="HSSP:1GTT"
FT                   /db_xref="InterPro:IPR002529"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6X4"
FT                   /protein_id="CAE38063.1"
FT                   /translation="MKYISFELPDGRRHAGVMTGPDTLVDLTDAMDLPDLLTLLQRHGQ
FT                   LAGDVARLAAQARHTVALDAVRVLAPLPNPPRNVFCVGKNYHEHAREFARSGFDSSAAA
FT                   GAVPAAPIIFSKPPSSVSGPGDAIDTALDPCDSVDYEAELAVVIGKAGRVAPDDDPWSF
FT                   VFGYTLVNDVTSRGLQKRHSQWLLGKGIDGYCPMGPALVSADEIGDIGALEITCEVNGE
FT                   LRQSARLSDLIFDIPTLVRAIGASITLQPGDVIATGTPVGVGIGFTPPKYLRRGDVVRV
FT                   RAEPIGVLENPVI"
FT   misc_feature    185420..185467
FT                   /note="PS00012 Phosphopantetheine attachment site."
FT   misc_feature    185447..185941
FT                   /note="HMMPfam hit to PF01557, Fumarylacetoacetate (FAA)
FT                   hydrolase family, score 4.1e-59"
FT   CDS             186062..187615
FT                   /transl_table=11
FT                   /locus_tag="BPP2771"
FT                   /product="Putative sugar ABC transport syste, ATP-binding
FT                   protein"
FT                   /note="Similar to Escherichia coli, and Escherichia coli
FT                   O157:H7 L-arabinose transport ATP-binding protein AraG or
FT                   B1900 or Z2953 or ECS2608 (504 aa) fasta scores:
FT                   E()=1.3e-48, 36.34% id in 476 aa, and to Ralstonia
FT                   solanacearum probable L-arabinose ATP-binding ABC
FT                   transporter protein AraG or RSC2757 or RS00097 SWALL:Q8XVS2
FT                   (EMBL:AL646071) (511 aa) fasta scores: E(): 1.3e-47, 38.15%
FT                   id in 477 aa"
FT                   /db_xref="GOA:Q7W6X3"
FT                   /db_xref="InterPro:IPR017871"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6X3"
FT                   /protein_id="CAE38064.1"
FT                   /translation="MMHSEGAASAAPSPQPPPLLRLRQISKRFGATQALDDVSVSFEAG
FT                   KVHCLLGENGAGKSTIGKIVAGLFAPDSGALLLDGHEVRLADASEARRRGIAVVYQELS
FT                   LAPDLSVRANLCLGAEAGRRPWSPLRRGAETAQVGAVLARLGLDLDMEAPVRQLPAGVQ
FT                   QLVEIAKSLMSSPRIVIFDEPTAMLGAAEKQRFFEVVRGLRADGIACILVTHHMDDVEA
FT                   VGDCVTIMRNGRRVDSFDLHAGITSDAVLEKLTGRREVLAAAAEAPRRLGATRLRIALP
FT                   AGGGLAGIEARAGEVVGFYGVLGCGAGELMYGLVGLDGPPRADYYLDDAPYRPRNPAAA
FT                   LRQGVGLLPAGRQSHGVLTGRSIRENLMLTQLDRVSRWQCIDPAREAAWAREQLERAGV
FT                   KHGDPADPIESLSGGNQQKALLARALGAARRLLLLHEPTAGVDILAKQHIHELVRAAAA
FT                   QGLTVVVLSSDLPEVIALCDTVYTFFHGAAVARYAQPGPDCQPHILADVLGQRESQHAH
FT                   "
FT   misc_feature    186194..186760
FT                   /note="HMMPfam hit to PF00005, ABC transporter, score
FT                   6.2e-48"
FT   misc_feature    186215..186238
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    186941..187519
FT                   /note="HMMPfam hit to PF00005, ABC transporter, score
FT                   1.2e-11"
FT   misc_feature    187292..187336
FT                   /note="PS00211 ABC transporters family signature."
FT   CDS             187605..188570
FT                   /transl_table=11
FT                   /locus_tag="BPP2772"
FT                   /product="Putative sugar ABC transport system, permease
FT                   protein"
FT                   /note="Similar to Escherichia coli, and Escherichia coli
FT                   O157:H7 ribose transport system permease protein Rbsc or
FT                   B3750 or Z5251 or ECS4692 SWALL:RBSC_ECOLI (SWALL:P04984)
FT                   (321 aa) fasta scores: E(): 6.3e-32, 39.52% id in 296 aa,
FT                   and to Clostridium perfringens probable ribose ABC
FT                   transporter RbsC or CPE1629 SWALL:Q8XJX4 (EMBL:AP003191)
FT                   (311 aa) fasta scores: E(): 6.9e-32, 35.49% id in 293 aa"
FT                   /db_xref="GOA:Q7W6X2"
FT                   /db_xref="InterPro:IPR001851"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6X2"
FT                   /protein_id="CAE38065.1"
FT                   /translation="MLTKTLAVSRAARPAPAARLADAILPLIIALIALVASLIEPRFAS
FT                   LDNLTNLACQLVPLLILSVGQAFAILRGGLDLSMSSVLSLAGVAGVLAMPAWGVAAGLA
FT                   VMLAVGLAAGVVSGFIIARFRTTPLVVTLGMLSVTQAIALILSGGVPIYDVPAPYVNAV
FT                   GFGRTLGLPNMVWIAAAVTLAAAFALKRTVFGRYVYALGSSESAASKAGVNVQRYTVMV
FT                   YAASGLCAAVGAVVLTAWTSSAQPVAVPGLTLQSIAAVVLGGVALTGGSGSIVQVFLGV
FT                   LVLSVLSNAMNITGVSAYFQTLVVGVVIIIAVILDRFRRS"
FT   misc_feature    join(187662..187721,187749..187817,187836..187895,
FT                   187905..187973,187992..188060,188103..188171,
FT                   188262..188330,188373..188462,188481..188549)
FT                   /note="9 probable transmembrane helices predicted for
FT                   BPP2772 by TMHMM2.0 at aa 20-39, 49-71, 78-97, 101-123,
FT                   130-152, 167-189, 220-242, 257-286 and 293-315"
FT   CDS             188611..189696
FT                   /transl_table=11
FT                   /locus_tag="BPP2773"
FT                   /product="Putative sugar ABC transport system,
FT                   substrate-binding protein"
FT                   /note="Similar to Agrobacterium tumefaciens ABC
FT                   transporter, substrate binding protein RbsB or ATU1899 or
FT                   AGR_C_3486 SWALL:AAL42895 (EMBL:AE009144) (309 aa) fasta
FT                   scores: E(): 6.4e-10, 28.41% id in 271 aa, and to Bacillus
FT                   subtilis D-ribose-binding protein precursor RbsB
FT                   SWALL:RBSB_BACSU (SWALL:P36949) (305 aa) fasta scores: E():
FT                   1.5e-07, 22.53% id in 284 aa"
FT                   /db_xref="InterPro:IPR017909"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6X1"
FT                   /protein_id="CAE38066.1"
FT                   /translation="MTLFGKTSRRPGLPRQAAGLALAACALASLPAQAKESDGDRLQGI
FT                   VEPIVARQPLKLGVTVVHLLDNFYKGIAYGIVDEARRSNVEVVQVAVAGAYGNVQQQFA
FT                   QLQSFKTLGVDYAVLSPAAYSGYDPVVADLARSGIKTISAGIPVNSDKIAFGVLQDDTL
FT                   IGKVLGKALCDDGAQGKQVIVVPGAAGLEWPRLRYEGFKEVASACGAKLTPAAFRGEMS
FT                   LADGMAQTQDLLMRTPDAEYVFTPVTFLGIGAVRAARQANRPVKVLTSAMVKENEAMIR
FT                   EGRLLAVASEPGVIMGRLIVQYAIREHEGLPMPPLDKPTRSVPYPHFNVPITVVDKSNV
FT                   DTHPYAFYDYPPQGWSIETAR"
FT   misc_feature    188611..188712
FT                   /note="Signal peptide predicted for BPP2773 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 1.000 between residues 34 and 35"
FT   misc_feature    188770..189603
FT                   /note="HMMPfam hit to PF00532, Periplasmic binding proteins
FT                   and sugar binding domain of the LacI family, score 1.9"
FT   CDS             189798..190535
FT                   /transl_table=11
FT                   /locus_tag="BPP2774"
FT                   /product="putative exported protein"
FT                   /note="No significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6X0"
FT                   /protein_id="CAE38067.1"
FT                   /translation="MWTLLRNRLPALLLGFWLAAPAQAFDAFECDCAQQVGTCSATVRI
FT                   LKTGGSAPSYSAELLVQSSAPACSRVSYLIDQTPYTTVLTRRNQDTESTSGTSPIKAAN
FT                   VKVQGCAICARKSAFAANESAPAPDDSGASRAFSAGLAPGGFDPASKQAGFDAAVSGGR
FT                   ARDASFNSIISGLGAAAAITSAAAQARQAGAQQPPATPSRSGYSPQYDLRSAGPQGGGR
FT                   CPDPSAPGCPYHLGTYDPLGAPK"
FT   misc_feature    189798..189869
FT                   /note="Signal peptide predicted for BPP2774 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.992) with cleavage site
FT                   probability 0.794 between residues 24 and 25"
FT   CDS             190532..191317
FT                   /transl_table=11
FT                   /locus_tag="BPP2775"
FT                   /product="Putative exported protein"
FT                   /note="No significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6W9"
FT                   /protein_id="CAE38068.1"
FT                   /translation="MTADRMRRLPGALMRLCALSCALLLAACAGAPPIPPQKDAAAGIF
FT                   PGERPKSPLAKVPAGPDVKAVAVLSENTLANAAWKRKIHDNARAMAQGKRFGDATIASA
FT                   GAELFDPDYPLAWVAASLKRYFGSVEQVSLAQLPQASGDVLAIVDVYAYPADDSVARIK
FT                   VAFFDRELRHIADASGEDAQHFNMWARTGGATAIAEGYRRENEVLMRALRKFDASLAQQ
FT                   VSGPPAQAAGGYDACLQRALVAQDPQLRVAAMAACDAAR"
FT   misc_feature    190532..190618
FT                   /note="Signal peptide predicted for BPP2775 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.997) with cleavage site
FT                   probability 0.447 between residues 29 and 30"
FT   misc_feature    190583..190615
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(191325..192227)
FT                   /transl_table=11
FT                   /locus_tag="BPP2776"
FT                   /product="Putative LysR-family transcriptional regulator"
FT                   /note="Similar to Ralstonia solanacearum probable
FT                   transcription regulator protein RSC2497 or RS01099
FT                   SWALL:Q8XWH7 (EMBL:AL646070) (321 aa) fasta scores: E():
FT                   5.6e-27, 34.42% id in 305 aa, and to Escherichia coli
FT                   transcriptional activator protein LysR or B2839
FT                   SWALL:LYSR_ECOLI (SWALL:P03030) (311 aa) fasta scores: E():
FT                   2.9e-14, 29.63% id in 270 aa"
FT                   /db_xref="GOA:Q7W6W8"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6W8"
FT                   /protein_id="CAE38069.1"
FT                   /translation="MRLRHIEVFHAVMVGGSLSAAARLLNMTQPAVSQTMNSLELQLGF
FT                   ALFQRVKGRLAPTPEAHALHAEVEKLNSQLDAVKLMAVNLRQDGPARLRILAAPALAME
FT                   VVPDALAAFMADSPNARMTVKTGYSGDILAALLLRDADIGLVYRCAPQALIRQETVGRG
FT                   MLVCVAPADRYAGRDHVTLADLRDSAVFVPERRHPMGRRLAELCAGQALDADNHVEIEQ
FT                   FHVALKLATAGLGVALVDSLTALGADLRRVRILALRPEVGFEVCVAYPEFDAHPHLSHR
FT                   FARCVREVVAARQARMAPG"
FT   misc_feature    complement(191355..191972)
FT                   /note="HMMPfam hit to PF03466, LysR substrate binding
FT                   domain, score 2.8e-24"
FT   misc_feature    complement(192042..192221)
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family, score 1.1e-19"
FT   misc_feature    complement(192087..192179)
FT                   /note="PS00044 Bacterial regulatory proteins, lysR family
FT                   signature."
FT   CDS             192376..193398
FT                   /transl_table=11
FT                   /locus_tag="BPP2777"
FT                   /product="putative exported protein"
FT                   /note="Similar to Comamonas testosteroni OrfJ protein
FT                   SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E():
FT                   3.2e-39, 39.31% id in 323 aa, and to Pseudomonas putida,
FT                   and Pseudomonas sp. hypothetical 34.5 kDa protein in
FT                   clcB-clcD intergenic region precursor SWALL:YCLC_PSEPU
FT                   (SWALL:Q47100) (329 aa) fasta scores: E(): 7.7e-37, 38.78%
FT                   id in 312 aa"
FT                   /db_xref="GOA:Q7W6W7"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6W7"
FT                   /protein_id="CAE38070.1"
FT                   /translation="MIRTKGKTVMLRTMPAARRLFVQSTLAITGLLAAAAACAQPATDW
FT                   PTRPIELVVPYPAGGSSDVLGRLLAKPLGEILGQPVVVLNKSGAATAIGTTFVARAAPD
FT                   GYTLLLADSPLVVNAAVNPAVTYDPVKDFAPVGIIGTSPSFLYAPAGRVKDLDDFIAQA
FT                   KAHPGRLKAASAGAGTSTHLLLELMQHEAGISLNHIPYRGSAPALTDTVAGIVDGSFST
FT                   YASAQPFVASGKLQVLAMTAPQRLPAFPGVPTFAEAGMPGLTFLTWWGILGPDGLPQPI
FT                   VDKLQQALAQVMKDPAIGEQFVRLSVVAQAGEPQAFAQTLQRDLQRWRDIARAAGVSMQ
FT                   "
FT   misc_feature    192376..192492
FT                   /note="Signal peptide predicted for BPP2777 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.999) with cleavage site
FT                   probability 0.790 between residues 39 and 40"
FT   misc_feature    192568..193386
FT                   /note="HMMPfam hit to PF03401, Uncharacterized protein
FT                   family, UPF0065, score 3.5e-89"
FT   CDS             193464..194447
FT                   /transl_table=11
FT                   /locus_tag="BPP2778"
FT                   /product="Putative agmatinase"
FT                   /EC_number="3.5.3.11"
FT                   /note="Similar to Streptomyces coelicolor agmatinase SpeB
FT                   or SCC105.01c SWALL:Q9L083 (EMBL:AL163641) (302 aa) fasta
FT                   scores: E(): 6.9e-38, 40.14% id in 284 aa, and to
FT                   Streptomyces clavuligerus possible agmatinase Pah
FT                   SWALL:SPEB_STRCL (SWALL:P37819) (313 aa) fasta scores: E():
FT                   1.1e-31, 35.73% id in 291 aa"
FT                   /db_xref="GOA:Q7W6W6"
FT                   /db_xref="HSSP:1GQ6"
FT                   /db_xref="InterPro:IPR006035"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6W6"
FT                   /protein_id="CAE38071.1"
FT                   /translation="MPSPSALHDLCDTPPTFMGVPHRHAIDGARAAILGIPFDCGTHAF
FT                   RIGARQGPQSIREQSRLMRTFNPELADYNPLQRLGVIDCGNVRVVPSDILDAFERIEQA
FT                   VGAIVDGGAVPVTMGGDGSVSLPQLRAVGKRHPGLAVIHLDSHTDTNTFVKGKEYNAGT
FT                   QFTHAALEGRVDTSLAFHIGTRGTTFTQHVFRHARHFGYQIIPLNELLARGMAEVLQDL
FT                   RARLGERPVYLCLDMDVLDPSCAPGVCAPSWGGLSAREAIAFLRGLAGLNIVAIDVNTV
FT                   SPPHDVNGTTASLAAALMVEGLVLLCKRLGLDHPDPAPDFAAMYAR"
FT   misc_feature    193542..194393
FT                   /note="HMMPfam hit to PF00491, Arginase family, score
FT                   2.1e-32"
FT   misc_feature    193884..193910
FT                   /note="PS00148 Arginase family signature 2."
FT   CDS             194559..195593
FT                   /transl_table=11
FT                   /locus_tag="BPP2779"
FT                   /product="Putative secreted protein"
FT                   /note="Similar to Ralstonia solanacearum putative signal
FT                   peptide protein RSC2510 or RS01072 SWALL:Q8XWG4
FT                   (EMBL:AL646070) (338 aa) fasta scores: E(): 5.4e-23, 29.96%
FT                   id in 327 aa, and to Mycobacterium smegmatis putative C4
FT                   decarboxylate binding protein SWALL:Q938B9 (EMBL:AY054120)
FT                   (353 aa) fasta scores: E(): 9.9e-16, 27.54% id in 334 aa"
FT                   /db_xref="GOA:Q7W6W5"
FT                   /db_xref="InterPro:IPR018389"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6W5"
FT                   /protein_id="CAE38072.1"
FT                   /translation="MSAAVRFLLRAALGACALTAAATAHAQQRWDMSLAWPAGNFHSRN
FT                   AEAFAAKVREATGGQVLITVHAGGELNVKGPDTLMAVESGIVQVADMLVSQQAGVEPLL
FT                   GMDALPGLIAGQDDMKTFLRHARPVYDRIAAAHNQRILYAVPWPSPGLFSRKALSTPED
FT                   MKGQKLRAHDKAAYEFMAQLGAAPTQMPWGEVVPALAAGTIDGVGTSASSGVDGKFWEF
FT                   TPHFLPLNWATSLSLVTVNLDAWDKLSAAQQQAVQAAAAELEPRFWQISAAQDEKDLAI
FT                   LREHKVAIATPSEALGARVAAVGRPMWDAFARQAGPAGAPAARRLSARPQAALSEPPWT
FT                   ACYA"
FT   misc_feature    194559..194636
FT                   /note="Signal peptide predicted for BPP2779 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.967 between residues 26 and 27"
FT   misc_feature    194652..195503
FT                   /note="HMMPfam hit to PF03480, Bacterial extracellular
FT                   solute-binding protein, family 7, score 5.1e-31"
FT   CDS             195572..196078
FT                   /transl_table=11
FT                   /locus_tag="BPP2780"
FT                   /product="Putative membrane protein"
FT                   /note="No significant database matches"
FT                   /db_xref="InterPro:IPR007387"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6W4"
FT                   /protein_id="CAE38073.1"
FT                   /translation="MDRLLRLIDALCAGAEHLAIALLYGIAALMLAEVGARAMGRSIPF
FT                   SWEYCAYGMAAAFFLGMGATLRHGAHIRVLFLRDALPARPARLLDIAASCAGLALSAVI
FT                   VVALARLTGKSIARGLVSNTVMQTPLAIPQAVVLAGAALLALAFVARQLTGRPAETDGG
FT                   RAAGH"
FT   misc_feature    join(195608..195676,195704..195772,195833..195901,
FT                   195959..196018)
FT                   /note="4 probable transmembrane helices predicted for
FT                   BPP2780 by TMHMM2.0 at aa 13-35, 45-67, 88-110 and 130-149"
FT   misc_feature    195719..195763
FT                   /note="PS00211 ABC transporters family signature."
FT   CDS             196098..197384
FT                   /transl_table=11
FT                   /locus_tag="BPP2781"
FT                   /product="Putative membrane protein"
FT                   /note="Similar to Agrobacterium tumefaciens putative
FT                   transmembrane protein DctM SWALL:Q9F7C8 (EMBL:AF282677)
FT                   (416 aa) fasta scores: E(): 2e-49, 36.67% id in 409 aa, and
FT                   to Wolinella succinogenes large integral C4-dicarboxylate
FT                   membrane transport protein, putative DctM SWALL:Q9ZEJ2
FT                   (EMBL:AJ132740) (415 aa) fasta scores: E(): 3.7e-40, 33.49%
FT                   id in 415 aa"
FT                   /db_xref="GOA:Q7W6W3"
FT                   /db_xref="InterPro:IPR004681"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6W3"
FT                   /protein_id="CAE38074.1"
FT                   /translation="MIAITVVTAALLLLFLGASIWVSLSLFGAAYFLLLLFKPNLPLDV
FT                   LAGQIVWTASTSQELLSLPLFVLMGEVLAKTSVGRSLFAGLAPWVGRLPGGLTHVNVLG
FT                   CTLFAAICGSSVATTQIVGRVTLPELQQRGYDARLSIGSLAGAGTLGFLIPPSLIMIVY
FT                   GVLAEQSIVELFIAGVLPGLGLAAVYMAYIALRAQRPDDAGPGYTLRERIAALAQILPV
FT                   IGLIAAIMGALYLGIAGPSEVAAVGVLGALAIGLLQRSLTRASLVAVGRSAVRTCSMIG
FT                   LILAGAALISVAMSYLGLPKYVAARIGELGLSPLLLIALLLLFYVVLGMFLDGTSIIVL
FT                   TLPIALPLVVAAGYDAIWFGIFLVVVVEMAQITPPVGFNLFVIQSITGRSLSFVARATL
FT                   PFFLLLLAWAMALAVWPEIVLWLPGTLRN"
FT   misc_feature    196098..196181
FT                   /note="Signal peptide predicted for BPP2781 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.998) with cleavage site
FT                   probability 0.915 between residues 28 and 29"
FT   misc_feature    join(196131..196199,196383..196451,196512..196580,
FT                   196608..196676,196734..196802,196815..196868,
FT                   196929..196997,197025..197093,197106..197159,
FT                   197169..197237,197274..197342)
FT                   /note="11 probable transmembrane helices predicted for
FT                   BPP2781 by TMHMM2.0 at aa 12-34, 96-118, 139-161, 171-193,
FT                   213-235, 240-257, 278-300, 310-332, 337-354, 358-380 and
FT                   393-415"
FT   CDS             197390..198133
FT                   /transl_table=11
FT                   /locus_tag="BPP2782"
FT                   /product="Putative transcriptional regulator"
FT                   /note="Similar to Streptomyces coelicolor putative
FT                   transcriptional regulator SCO6256 or SCAH10.21 SWALL:Q9RKT6
FT                   (EMBL:AL132824) (245 aa) fasta scores: E(): 8.4e-08, 28.51%
FT                   id in 242 aa, and to Streptomyces griseus GntR-family
FT                   transcriptional regulator DasR SWALL:Q8VV01 (EMBL:AB061860)
FT                   (253 aa) fasta scores: E(): 1.5e-06, 27.03% id in 233 aa"
FT                   /db_xref="GOA:Q7W6W2"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6W2"
FT                   /protein_id="CAE38075.1"
FT                   /translation="MPAMTDSDKKTPLYRRVAQDLMGDIATMPVGSILPTEVELAARLG
FT                   VSRATIRDAMEILVEHRMVERVKRLGTRILRNTPGHRYVQHMDGLAHALEFAGQSLMRI
FT                   DDTAIVEGSGGEPGLAALPNATGQWLRVTGTRRLVDDDAPSTWTRVFVPGRYQGIAPLL
FT                   HGELDSVYAVIERVYSLKVARLRHRVTAVALPGYASGALGLPAGAPVLQVSAWLHEADG
FT                   ALVEYVRSLHHPEKVSIDFSAAQSS"
FT   misc_feature    197438..197611
FT                   /note="HMMPfam hit to PF00392, Bacterial regulatory
FT                   proteins, gntR family, score 1.4e-10"
FT   misc_feature    197489..197563
FT                   /note="PS00043 Bacterial regulatory proteins, gntR family
FT                   signature."
FT   CDS             198187..198876
FT                   /transl_table=11
FT                   /locus_tag="BPP2783"
FT                   /product="carboxymethylenebutenolidase"
FT                   /EC_number="3.1.1.45"
FT                   /note="Similar to Caulobacter crescentus
FT                   carboxymethylenebutenolidase CC3758 SWALL:Q9A213
FT                   (EMBL:AE006033) (231 aa) fasta scores: E(): 2.6e-35, 46.93%
FT                   id in 228 aa, and to Pseudomonas putida, and Pseudomonas
FT                   sp. carboxymethylenebutenolidase ClcD SWALL:CLCD_PSEPU
FT                   (SWALL:P11453) (236 aa) fasta scores: E(): 5.3e-27, 41.25%
FT                   id in 223 aa"
FT                   /db_xref="GOA:Q7W6W1"
FT                   /db_xref="HSSP:1GGV"
FT                   /db_xref="InterPro:IPR002925"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6W1"
FT                   /protein_id="CAE38076.1"
FT                   /translation="MTMITLKTRDGQTFEAYHAPAPTAGAPGLVLIQEIFGINPAMRAA
FT                   ADQWARLGFDVLCPDLFWRQEPGVQLDPTSEADFGQAVRLMQAMDENQAIADLDTARAW
FT                   LAERSGGKVAGLGYCLGGRLAVRLTMDTPVQCAVSYYGVMLDQLLPTVDAQAAPTLLHV
FT                   AEQDRFVPPEARAVILEAAGKLPQCEAHVYEGCDHAFARPGGEHWDAAAAALAEERSVA
FT                   FMQRHLA"
FT   misc_feature    198226..198870
FT                   /note="HMMPfam hit to PF01738, Dienelactone hydrolase
FT                   family, score 2.8e-56"
FT   CDS             198888..199667
FT                   /transl_table=11
FT                   /locus_tag="BPP2784"
FT                   /product="Putative dehydrogenase"
FT                   /note="Similar to Rhizobium loti probable dehydrogenase
FT                   MLR7106 SWALL:Q987C7 (EMBL:AP003011) (257 aa) fasta scores:
FT                   E(): 9.6e-26, 42.35% id in 255 aa, and to Agrobacterium
FT                   tumefaciens 2-deoxy-D-gluconate 3-dehydrogenase KduD or
FT                   ATU6062 or AGR_PTI_126 SWALL:AAL46298 (EMBL:AE009425) (256
FT                   aa) fasta scores: E(): 2.5e-24, 41.44% id in 263 aa"
FT                   /db_xref="GOA:Q7W6W0"
FT                   /db_xref="HSSP:1GZ6"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6W0"
FT                   /protein_id="CAE38077.1"
FT                   /translation="MTAVPSIAPVLDLSGRSAVVTGAGAGIGRAAALRLAQAGAAVAVI
FT                   DINGEAAHDTCARIAALGGAAAAYAISVTDQDALLAAARDAQERLGPCGVLVNNAGVLL
FT                   RSAFDDPRARDFWAATLDVNLNGPYLAAQAFYPQLRATRGCIVNIASIHSFVAVKNSAA
FT                   YTASKGGIKQMTQALALELGADGIRVNAVAPGLTVTDMTRATVADPEGLTRFLARVPLA
FT                   RPGSVDDVVNAICFLASDWAAYITGVTLPVDGGYVAN"
FT   misc_feature    198927..199655
FT                   /note="HMMPfam hit to PF00106, short chain dehydrogenase,
FT                   score 5e-73"
FT   misc_feature    199338..199424
FT                   /note="PS00061 Short-chain dehydrogenases/reductases family
FT                   signature."
FT   CDS             complement(199678..200478)
FT                   /transl_table=11
FT                   /locus_tag="BPP2785"
FT                   /product="Putative transcriptional regulator"
FT                   /note="Similar to Ralstonia solanacearum probable
FT                   transcription regulator protein RSC3411 or RS01720
FT                   SWALL:Q8XTY4 (EMBL:AL646075) (262 aa) fasta scores: E():
FT                   1.4e-52, 54.75% id in 263 aa, and to Escherichia coli
FT                   transcriptional regulator KdgR or B1827 SWALL:KDGR_ECOLI
FT                   (SWALL:P76268) (263 aa) fasta scores: E(): 5.2e-16, 31.27%
FT                   id in 243 aa"
FT                   /db_xref="GOA:Q7W6V9"
FT                   /db_xref="InterPro:IPR005471"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6V9"
FT                   /protein_id="CAE38078.1"
FT                   /translation="MRMLDYDEELASNAMFNQSFAKGLKALFAFQGHQSAMSLSELAAR
FT                   LDASISSVQRTVFTLERLGLISKSPKTRKYSLTLRVLELGCNYITADALVEAANPFLAE
FT                   LSNITGETVNLTEPLEREMVYVSRVVAAKFIPIHMPIGSRIPMYCTASGRAYLSALDDA
FT                   RVQAILDGSTLKRHTPWTETDPARLRALIEQARVSGVAHNKEELFLGDMTLAAPIVGGR
FT                   GAPVACVHIVAPTSRWTQEEAFARLAPPLRDCARGIANAVRAFT"
FT   misc_feature    complement(199696..200256)
FT                   /note="HMMPfam hit to PF01614, Bacterial transcriptional
FT                   regulator, score 3.5e-45"
FT   misc_feature    complement(200281..200310)
FT                   /note="PS00339 Aminoacyl-transfer RNA synthetases class-II
FT                   signature 2."
FT   CDS             join(200621..200833,200833..201675)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP2786"
FT                   /product="Putative ABC transporter, ATP-binding protein
FT                   (pseudogene)"
FT                   /note="Similar to Rhizobium meliloti probable ATP-binding
FT                   ABC transporter protein R02243 or SMC01631 SWALL:Q92NG2
FT                   (EMBL:AL591790) (359 aa) fasta scores: E(): 1.4e-36, 46.24%
FT                   id in 346 aa, and to Deinococcus radiodurans
FT                   spermidine/putrescine ABC transporter, ATP-binding protein
FT                   DR1302 SWALL:Q9RUT0 (EMBL:AE001977) (362 aa) fasta scores:
FT                   E(): 1.5e-33, 49.68% id in 320 aa"
FT                   /db_xref="PSEUDO:CAE38079.1"
FT   misc_feature    join(200732..200833,200833..201243)
FT                   /note="HMMPfam hit to PF00005, ABC transporter, score
FT                   1.2e-58"
FT   misc_feature    200753..200776
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             201701..202753
FT                   /transl_table=11
FT                   /locus_tag="BPP2787"
FT                   /product="putative ABC transporter, periplasmic
FT                   solute-binding protein"
FT                   /note="Similar to Rhizobium meliloti putative ABC
FT                   transporter, periplasmic solute-binding protein Ra0969 or
FT                   Sma1755 SWALL:Q92YB5 (EMBL:AE007283) (350 aa) fasta scores:
FT                   E(): 9.2e-12, 29.06% id in 320 aa, and to Rhizobium
FT                   meliloti putative spermidine/putrescine-binding periplasmic
FT                   ABC transporter protein R02500 or Smc01966 SWALL:Q92MV9
FT                   (EMBL:AL591790) (359 aa) fasta scores: E(): 1.3e-12, 26.94%
FT                   id in 334 aa"
FT                   /db_xref="GOA:Q7W6V8"
FT                   /db_xref="InterPro:IPR006059"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6V8"
FT                   /protein_id="CAE38080.1"
FT                   /translation="MNITQRFAKWALAASMLGASAAVPAQDITMATWGGGVGKAWREAY
FT                   AEPFMKASKLEVKIVEVPTPEAQVRAQKGAPKFNAVLSSLFEAAQMYEDGLLEDFDMAD
FT                   FPALKNMPDKYLLKAPNGRLIGVSTYFAYYGIAVNTDLAKPADFASWKNLADPKWAGKL
FT                   SVTRPVYSSAYDLTIMSVAEGGSERDTAKGLELLTALGKNALTMYSSMAQMNQLLQRGE
FT                   VAAAPYYSTRIWQMQRDGQRNVELVVPKEGALMLPYLVVVPKGAQGREHYMKWLEYVGQ
FT                   PEGQQRIAEIAGYMPLNSQARLSPAAEKELGQPLDKLRDQLYQPDWNLIAKTRKTRIEA
FT                   VERAMAGAAR"
FT   misc_feature    201701..201775
FT                   /note="Signal peptide predicted for BPP2787 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.774 between residues 25 and 26"
FT   misc_feature    201800..202747
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF01547, Bacterial extracellular
FT                   solute-binding protein, score 6.1e-07"
FT   CDS             202764..203603
FT                   /transl_table=11
FT                   /locus_tag="BPP2788"
FT                   /product="ABC transporter permease protein"
FT                   /note="Similar to Escherichia coli putrescine transport
FT                   system permease protein PotH or B0856 SWALL:POTH_ECOLI
FT                   (SWALL:P31135) (317 aa) fasta scores: E(): 6.8e-29, 36.55%
FT                   id in 238 aa, and to Rhizobium loti ABC transporter,
FT                   permease Mlr6080 SWALL:Q98AB1 (EMBL:AP003008) (592 aa)
FT                   fasta scores: E(): 5.8e-31, 38.91% id in 257 aa"
FT                   /db_xref="GOA:Q7W6V7"
FT                   /db_xref="InterPro:IPR000515"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6V7"
FT                   /protein_id="CAE38081.1"
FT                   /translation="MMRAIRPPLLLLAPPALLVALFVVGVGYLVVESLHTGAGWGLDNF
FT                   VRFFERPDYVAVLVRTIVIAVAVTACAALVGYPIAYAIARYRGNRNFLMMLVIMPWLVS
FT                   VVVRTYGWMVILGPRGTLNSMLLSAGVIDTPLRLIFNMTGVVIGLVHVFCPFFIVSVLA
FT                   VLLYLDRSLDEASQTLSAGPFKTFWHVTLPLSMPGVITGAMLVYLLSTGAIVTPLLLGG
FT                   VRDGMLATQIYQDVLQVFDYPKAASMAVVLLLTAFTLVIPLQWLERRVAARVSGRGA"
FT   misc_feature    202764..202838
FT                   /note="Signal peptide predicted for BPP2788 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.967) with cleavage site
FT                   probability 0.803 between residues 25 and 26"
FT   misc_feature    join(202788..202856,202932..203000,203037..203105,
FT                   203196..203264,203322..203390,203496..203564)
FT                   /note="6 probable transmembrane helices predicted for
FT                   BPP2788 by TMHMM2.0 at aa 9-31, 57-79, 92-114, 145-167,
FT                   187-209 and 245-267"
FT   misc_feature    203253..203462
FT                   /note="HMMPfam hit to PF00528, Binding-protein-dependent
FT                   transport systems inner membrane component, score 7e-11"
FT   CDS             203605..204399
FT                   /transl_table=11
FT                   /locus_tag="BPP2789"
FT                   /product="ABC transporter permease protein"
FT                   /note="Similar to Pseudomonas aeruginosa probable permease
FT                   of ABC transporter Pa0606 SWALL:Q9I5T2 (EMBL:AE004497) (276
FT                   aa) fasta scores: E(): 1.1e-26, 37.34% id in 249 aa, and to
FT                   Agrobacterium tumefaciens ABC transporter, membrane
FT                   spanning protein Atu4245 or Agr_l_1232 SWALL:AAL45039
FT                   (EMBL:AE009353) (266 aa) fasta scores: E(): 4.1e-27, 37.44%
FT                   id in 243 aa"
FT                   /db_xref="GOA:Q7W6V6"
FT                   /db_xref="InterPro:IPR000515"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6V6"
FT                   /protein_id="CAE38082.1"
FT                   /translation="MKTARLLLLCLLFGFLPLSIVIVAISSFTQSGYFSVPLDALSLRW
FT                   YVEFFTDWQWISLLLLVSAAVALGVALISTTAALLAALVLARRRFAGSGLLETLIMLPL
FT                   VFPNAALGVAFLGVLGLLGIGGTYLGIVLAHCIITLPFAYRPILNALRKLDPALEEASM
FT                   SLSATPLQVLRTVTLPMLRPGLITAFLFCFIVSFDEATVTIFLIAPDVNTLPVRILTQI
FT                   QESASPVIAVIATFLILFTLSLVLLLERTVGLELFAAPQRER"
FT   misc_feature    203605..203691
FT                   /note="Signal peptide predicted for BPP2789 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.999) with cleavage site
FT                   probability 0.419 between residues 29 and 30"
FT   misc_feature    join(203623..203691,203767..203862,203899..203967,
FT                   203980..204048,204154..204222,204280..204348)
FT                   /note="6 probable transmembrane helices predicted for
FT                   BPP2789 by TMHMM2.0 at aa 7-29, 55-86, 99-121, 126-148,
FT                   184-206 and 226-248"
FT   misc_feature    204052..204273
FT                   /note="HMMPfam hit to PF00528, Binding-protein-dependent
FT                   transport systems inner membrane component, score 1.3e-11"
FT   CDS             204426..204737
FT                   /transl_table=11
FT                   /gene="dmfA1"
FT                   /locus_tag="BPP2790"
FT                   /product="small subunit of N,N-dimethylformamidase"
FT                   /note="Similar to Alcaligenes sp. KUFA-1 small subunit of
FT                   N,N-dimethylformamidase DmfA1 SWALL:Q9LCC1 (EMBL:AB028874)
FT                   (132 aa) fasta scores: E(): 1.4, 37.28% id in 59 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6V5"
FT                   /protein_id="CAE38083.1"
FT                   /translation="MYEIQPEDAELLRHFRTTTTKTRPLKLNRLLNRLRMEPMAGKQVI
FT                   VCTRPYSEYAIGTLGERRGDPVALHAERYATLAEAQWAILKIRWAIHSPYPWPVVGLD"
FT   CDS             join(204794..205363,205367..205546,205546..207018)
FT                   /pseudo
FT                   /transl_table=11
FT                   /gene="dmfA2"
FT                   /locus_tag="BPP2791"
FT                   /product="large subunit of N,N-dimethylformamidase
FT                   (pseudogene)"
FT                   /note="Similar to Alcaligenes sp. KUFA-1 large subunit of
FT                   N,N-dimethylformamidase dmfa2 SWALL:Q9LCC0 (EMBL:AB028874)
FT                   (762 aa) fasta scores: E(): 3.2e-69, 36.53% id in 761 aa"
FT                   /db_xref="PSEUDO:CAE38084.1"
FT   CDS             207026..207838
FT                   /transl_table=11
FT                   /locus_tag="BPP2793"
FT                   /product="hypothetical protein"
FT                   /note="The N-terminal region of this CDS is similar to
FT                   putative oxidoreductases. The C-terminal region is similar
FT                   to biotin carboxylase subunit of acetyl-CoA carboxylase.
FT                   This hybride CDS resulted from a large deletion event."
FT                   /db_xref="GOA:Q7W6V4"
FT                   /db_xref="HSSP:1DV1"
FT                   /db_xref="InterPro:IPR011764"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6V4"
FT                   /protein_id="CAE38085.1"
FT                   /translation="MPPPLPYDAMRSVWTDTAAPAMATAPLAGHADCDVAIVGAGITGL
FT                   SAALHLAERGLRACVLEARDPGWGASGRNGGQVIPGIKHDPDEILARHGRERGEPLLHM
FT                   VGTAADTVFDLIDRYGLDLVQAQIRLAAGERLDRVVPADLQPSGHAIELRVYAEDPVRF
FT                   IPSPGTLAVFELPQGPGVRTETGYHAGNAVSPHYDPMIAKIIVHGADRAQAIARAEQAL
FT                   ADTEIAGVKTNLPFLARALAFEPWRQGRLHTGIVARTLAEPAPAALTA"
FT   variation       207389..207391
FT                   /note="large deletion around this codon relative to
FT                   bronchiseptica"
FT   misc_feature    207479..207796
FT                   /note="HMMPfam hit to PF02785, Biotin carboxylase
FT                   C-terminal domain, score 1.8e-46"
FT   CDS             207859..208083
FT                   /transl_table=11
FT                   /gene="madF"
FT                   /locus_tag="BPP2794"
FT                   /product="biotin protein"
FT                   /note="Similar to Malonomonas rubra biotin protein MadF
FT                   SWALL:O06930 (EMBL:U87980) (69 aa) fasta scores: E():
FT                   0.0032, 31.42% id in 70 aa, and to Bacillus halodurans
FT                   hypothetical protein Bh1133 SWALL:Q9KDS8 (EMBL:AP001511)
FT                   (70 aa) fasta scores: E(): 2.4e-06, 42.64% id in 68 aa"
FT                   /db_xref="HSSP:1IYU"
FT                   /db_xref="InterPro:IPR000089"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6V3"
FT                   /protein_id="CAE38086.1"
FT                   /translation="MKKIPVKSEVTGNVWEVLKAGDNRVEEGETLIVVESMKMEIPVDA
FT                   PAAGRLVEITVQKGDAIGEGDVVAMLEVQ"
FT   CDS             208130..209341
FT                   /transl_table=11
FT                   /locus_tag="BPP2795"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Ralstonia solanacearum hypothetical
FT                   protein Rsc1197 or Rs05729 SWALL:Q8Y047 (EMBL:AL646063)
FT                   (405 aa) fasta scores: E(): 5.4e-65, 48.73% id in 394 aa,
FT                   and to Caulobacter crescentus hypothetical protein Cc3562
FT                   SWALL:Q9A2J9 (EMBL:AE006014) (433 aa) fasta scores: E():
FT                   2.4e-70, 46.4% id in 403 aa"
FT                   /db_xref="GOA:Q7W6V2"
FT                   /db_xref="HSSP:1PQY"
FT                   /db_xref="InterPro:IPR003673"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6V2"
FT                   /protein_id="CAE38087.1"
FT                   /translation="MTQPAAGAGPLAGYTVLELGSTIAGPFCGRLLADFGARVIKVEAT
FT                   EGDALRSMGRHKGGHSLYALSLLRNKELVSIDLRQPDGQELVRELAARADILIENFRPG
FT                   ALEKWNLGYDVLSRANPGLVMVRISGYGQDGPYSGRPGYGVIGEAHSGLRSVTGDPDRP
FT                   PSRVATSLSDYITGLYGAFGALLALESRRRTGRGQVVDTALAECAFSFMEPHVMAYDQL
FT                   REVANRAGSRLPGSAPNNLYRCADGAYVHVTTLTNALFRRLAAALDAPELADDPRFAEP
FT                   GQRARHDAELDAAIQDWFSRHDCPTVLARLTQAEIPHAKIYGVDDVFADPHFQARGALA
FT                   RLPHPQLGEVTVPNVVPRLSETPGAVRSLGKDAGADTLAVLRDELGLDATRLDALRQRG
FT                   AIRA"
FT   misc_feature    208349..208918
FT                   /note="HMMPfam hit to PF02515, CAIB/BAIF family, score
FT                   1.3e-71"
FT   repeat_region   209370..209398
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS1002 element"
FT   repeat_region   209370..210410
FT                   /note="IS1002 insertion sequence"
FT   CDS             209460..210410
FT                   /transl_table=11
FT                   /locus_tag="BPP2796"
FT                   /product="transposase for IS1002"
FT                   /note="transposase for IS1002 element"
FT                   /db_xref="GOA:Q7W6V1"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6V1"
FT                   /protein_id="CAE38088.1"
FT                   /translation="MNNHKHARLTRLGRALLVNRVMQQNWTMRQASQAAGVSLRTGYKW
FT                   LARFRSEGLDGLLDRSSRPHRSPKACAPEQVEHFAQQRRQRLPLWRIAREAGRSLATVA
FT                   RYMERIGLSRLASLEPPAPVRRYERASPGELLHIDTKRLGRIRGVGHRITGDRAQNRNR
FT                   GIGWDAVHLAIDDFSRVSFARILDDEGGDQCAEFLHQATAYYASLGVRIDRVMTDNGSG
FT                   YVSRTFRAVCVELGIRHIRTRPYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQ
FT                   PFIDRYNWCRPHSALGHQPPITRIPDVNNLLRIDI"
FT   misc_feature    209841..210377
FT                   /note="HMMPfam hit to PF00665, Integrase core domain, score
FT                   6.3e-30"
FT   repeat_region   complement(210382..210410)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS1002 element"
FT   CDS             210612..210890
FT                   /transl_table=11
FT                   /locus_tag="BPP2797"
FT                   /product="hypothetical protein"
FT                   /note="no significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6V0"
FT                   /protein_id="CAE38089.1"
FT                   /translation="MCCAARSTSKAVAHMERIIGSIEQACAIARRWAIRTGNKEATCAA
FT                   LAAAWYEAQAARPPTSAALLAHLAARIQESRQRVAVPRPAPIPPAED"
FT   CDS             211125..211568
FT                   /transl_table=11
FT                   /locus_tag="BPP2798"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Vibrio cholerae hypothetical protein
FT                   Vca1019 SWALL:Q9KKT1 (EMBL:AE004428) (148 aa) fasta scores:
FT                   E(): 2.1e-06, 33.07% id in 130 aa, and to Mycobacterium
FT                   leprae putative integral membrane protein Ml0956
FT                   SWALL:Q9CCC8 (EMBL:AL583920) (169 aa) fasta scores: E():
FT                   0.00026, 26.81% id in 138 aa"
FT                   /db_xref="InterPro:IPR011637"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6U9"
FT                   /protein_id="CAE38090.1"
FT                   /translation="MPAREIQLTLIRVYIGLDFTHHFAEKFGLLGAQAYADVLHYFSTV
FT                   TANPQSMLLLAGLCEFAAFIGFTFGLFTRVAAAGTAAYLVIALFIGNHQHLGFTWANPG
FT                   GGWEFPAMWAFICLSFVLSGGGRWSLDRLLLPRLPAALRWLSR"
FT   misc_feature    join(211272..211340,211359..211427,211455..211514)
FT                   /note="3 probable transmembrane helices predicted for
FT                   BPP2798 by TMHMM2.0 at aa 110-132, 139-161 and 171-190"
FT   CDS             211724..213298
FT                   /transl_table=11
FT                   /gene="lysP"
FT                   /gene_synonym="cadR"
FT                   /locus_tag="BPP2799"
FT                   /product="lysine-specific permease"
FT                   /note="Similar to Escherichia coli lysine-specific permease
FT                   LysP or CadR or B2156 SWALL:LYSP_ECOLI (SWALL:P25737) (488
FT                   aa) fasta scores: E(): 5.9e-141, 72.91% id in 480 aa, and
FT                   to Yersinia pestis putative lysine-specific permease LysP
FT                   or Ypo1309 SWALL:Q8ZGI8 (EMBL:AJ414147) (503 aa) fasta
FT                   scores: E(): 3.7e-140, 71.07% id in 491 aa"
FT                   /db_xref="GOA:Q7W6U8"
FT                   /db_xref="InterPro:IPR004841"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6U8"
FT                   /protein_id="CAE38091.1"
FT                   /translation="MAPPGHVVPSPANGHRHDARPATRLPEPTSLRRTLSARHLTMIAV
FT                   GGSIGTGLFVASGATIAQAGPGGALLAYLLVGIMVYFLMTSLDELAASMPVAGSFSTYG
FT                   AKYVDEGFGFALGWNYWYNWAVTVAVDLVAAQLVMAYWFPEMPGVLWSAAFLALIVGLN
FT                   ALSARGFGEAEFWFALIKVIAVLAFIAMGVLMLLGIIRGGEHGGLAYWTLDDAPFAGGF
FT                   AALIGVAMVVGFSFQGTELIGIAAGESKDPARNLPRAVRQVFWRILLFYVLAIAVIGLL
FT                   IPYTDPQLLRNEVSDVSVSPFALIFERAGLLAAASIMNAVVLTSVLSAGNSGMYAATRM
FT                   LYSLARDGKAPARFGRLSRSGVPLWALLATTAVAALCFLSFLFSPKAVYIWLLNTSGMT
FT                   GFIAWLGIAISHYRFRRGYVAQGNNLADLPYVSPFFPFGPLFAFVLCLVITLGQNYHAF
FT                   LQDRIDWTGAAATYVGIPLFLAIWAGYRLVRGSRFVRYRDMQFPDLRMRNRELNAMLSG
FT                   DCAEPRR"
FT   misc_feature    211814..213193
FT                   /note="HMMPfam hit to PF00324, Amino acid permease, score
FT                   3.4e-225"
FT   misc_feature    join(211841..211909,211922..211975,212084..212152,
FT                   212165..212233,212252..212320,212378..212431,
FT                   212510..212578,212648..212716,212804..212872,
FT                   212882..212950,213011..213079,213122..213190)
FT                   /note="12 probable transmembrane helices predicted for
FT                   BPP2799 by TMHMM2.0 at aa 40-62, 67-84, 121-143, 148-170,
FT                   177-199, 219-236, 263-285, 309-331, 361-383, 387-409,
FT                   430-452 and 467-489"
FT   CDS             complement(213338..214069)
FT                   /transl_table=11
FT                   /locus_tag="BPP2800"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Synechocystis sp. hypothetical protein
FT                   Slr0841 SWALL:Q55426 (EMBL:D64003) (291 aa) fasta scores:
FT                   E(): 0.14, 26.28% id in 175 aa"
FT                   /db_xref="InterPro:IPR005184"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6U7"
FT                   /protein_id="CAE38092.1"
FT                   /translation="MPARSSTAAAQPATLTTHTWRLAAAVDRQGQPIAPLQIGLERPLR
FT                   LAFSERAINISGGCNAQFGGYTYGKGRLEIANLAATMKACEAGLMALDAAVGERLKGSL
FT                   RATLGEQAGQPRLVLVADNGDTLSFDGEPTPETLYGSKGETVFLEVAAQRVQCSHPMIP
FT                   QHRCLQVRERRYDAAGLQLPAQDDWRPLYQSVQGYEHRDGVRTVLRTKRYEWKNPPADA
FT                   PSTVYVLDMVVEQEMAPGGKR"
FT   misc_feature    complement(213707..214072)
FT                   /note="HMMPfam hit to PF03724, Domain of unknown function
FT                   (306), score 2.5e-10"
FT   CDS             214322..214546
FT                   /transl_table=11
FT                   /locus_tag="BPP2801"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Streptomyces coelicolor hypothetical
FT                   protein Sco5609 or Sc2e1.26C SWALL:O69897 (EMBL:AL023797)
FT                   (65 aa) fasta scores: E(): 1.1, 42.55% id in 47 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6U6"
FT                   /protein_id="CAE38093.1"
FT                   /translation="MSRFRSTFWRCAFVLAFLASALVAGWLRQAAPSWGHALLYGAMVG
FT                   GIVLCLALLFDDLAWWGTRLVQALKRMRP"
FT   misc_feature    join(214337..214405,214418..214486)
FT                   /note="2 probable transmembrane helices predicted for
FT                   BPP2801 by TMHMM2.0 at aa 33-55 and 60-82"
FT   CDS             complement(join(214568..214798,214800..215549))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP2802"
FT                   /product="putative exported protein (pseudogene)"
FT                   /note="Similar to Rhizobium meliloti hypothetical protein
FT                   Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa)
FT                   fasta scores: E(): 7.7e-41, 38.03% id in 326 aa, and to
FT                   Comamonas testosteroni OrfJ protein SWALL:Q9RHM9
FT                   (EMBL:AB029044) (326 aa) fasta scores: E(): 3e-37, 38.55%
FT                   id in 319 aa"
FT                   /db_xref="PSEUDO:CAE38094.1"
FT   misc_feature    complement(join(214580..214792,214797..215384))
FT                   /note="HMMPfam hit to PF03401, Uncharacterized protein
FT                   family, UPF0065, score 9.9e-105"
FT   misc_feature    complement(215454..215549)
FT                   /note="Signal peptide predicted for BPP2802 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.998) with cleavage site
FT                   probability 0.659 between residues 32 and 33"
FT   CDS             complement(215562..216488)
FT                   /transl_table=11
FT                   /gene="hmgL"
FT                   /locus_tag="BPP2803"
FT                   /product="hydroxymethylglutaryl-CoA lyase"
FT                   /EC_number="4.1.3.4"
FT                   /note="Similar to Rhodospirillum rubrum
FT                   hydroxymethylglutaryl-CoA lyase HmgL SWALL:P95639
FT                   (EMBL:U41280) (303 aa) fasta scores: E(): 3.2e-39, 43.91%
FT                   id in 296 aa, and to Bacillus halodurans
FT                   hydroxymethylglutaryl-CoA lyase Bh1134 SWALL:Q9KDS7
FT                   (EMBL:AP001511) (303 aa) fasta scores: E(): 2.1e-41, 41.13%
FT                   id in 299 aa"
FT                   /db_xref="GOA:Q7W6U5"
FT                   /db_xref="InterPro:IPR000891"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6U5"
FT                   /protein_id="CAE38095.1"
FT                   /translation="MQERIHITDVSPRDGLQNQPAQVPTQEKLRLIRLLAEAGVRSVEA
FT                   TSFVSPRAVPQMADAAELVAQVHAALPDLRTSVLVPNLKGLERALAAGAREIAVVLSAT
FT                   ETMNRKNINMGLAQAVSVSEQTLAAARGAGLRTRAYVAVAFDCPFEGATPLADVLRLAA
FT                   AMYAAGADEIVIADTIGSAAPGEVKTRLRALRDVAPLERLAVHFHDTRGMGVANAWAAL
FT                   EAGVRRFDASVGGIGGCPFAPGAAGNLATEDLVLMAERSGFASGISLDGLLRAVDAAQA
FT                   QLQRPLGGRSMAWLRRQAGSAVRVQQP"
FT   misc_feature    complement(215622..216458)
FT                   /note="HMMPfam hit to PF00682, HMGL-like, score 2.4e-66"
FT   CDS             complement(216493..217689)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP2804"
FT                   /product="conserved hypothetical protein (pseudogene)"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein Pa0446 SWALL:Q9I672 (EMBL:AE004482) (407 aa) fasta
FT                   scores: E(): 3.7e-54, 40.29% id in 407 aa, and to Ralstonia
FT                   solanacearum putative transmembrane protein Rsc0796 or
FT                   Rs05041 SWALL:Q8Y194 (EMBL:AL646061) (420 aa) fasta scores:
FT                   E(): 4.4e-58, 43.73% id in 407 aa"
FT   variation       complement(216493..216495)
FT                   /note="This is the stop codon (TGA) in bronchiseptica; TGG
FT                   in parapertussis"
FT   misc_feature    complement(216910..217476)
FT                   /note="HMMPfam hit to PF02515, CAIB/BAIF family, score
FT                   8.3e-80"
FT   CDS             217861..219789
FT                   /transl_table=11
FT                   /gene="prpR"
FT                   /locus_tag="BPP2805"
FT                   /product="propionate catabolism operon regulatory protein"
FT                   /note="Similar to Salmonella typhimurium propionate
FT                   catabolism operon regulatory protein PrpR or Stm0367
FT                   SWALL:PRPR_SALTY (SWALL:P74839) (541 aa) fasta scores: E():
FT                   5.1e-47, 35.59% id in 635 aa, and to Pseudomonas aeruginosa
FT                   propionate catabolism operon regulator PrpR SWALL:Q9APX8
FT                   (EMBL:AF241171) (650 aa) fasta scores: E(): 5.5e-85, 44.66%
FT                   id in 609 aa"
FT                   /db_xref="GOA:Q7W6U4"
FT                   /db_xref="InterPro:IPR020441"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6U4"
FT                   /protein_id="CAE38097.1"
FT                   /translation="MPALSAAQPLPRLCFVSYRQIREFAAPVIAEYRNRAAIDVVDGTF
FT                   ADALAVARDRIERNAVDAFISAGANASILRANLQAPVATIQLGGFDLLQALIRARRIAS
FT                   RVGVVMYGQTLPELDAVKELLNIEITQYAYQTPYHARQGFEQLRRDGFQVIVGSSLVVE
FT                   LAEEAGLRGILAYSLASIRQGFEDAIELARVARLEAGRYEQLNGVLHNLQEAVLAVDRD
FT                   HRIIAVNPPMRELLDMPNRTLLGQRLDAVEPELSLQPTLDSGRAERAAVQRYARRDWIA
FT                   NRTPILEYGKLVGAALTLYDAHRIQEADSSLRMQQRRRQSAARHRFDTLLGQSPAFMRA
FT                   VDTARRYAGTDLRVLIQGESGVGKELFAQSIHNASARAHRPFVAINCASLPETLLESEL
FT                   FGYEDGAFTGSRRDGKRGLIEAAHTGTLFLDEIGDMPLSLQTRLLRVLQEGEITRLGAT
FT                   TPVPVDVRVLAATHQPLQELVAQRRFRQDLYYRINALRLPLPPLRERGADIALLATRLV
FT                   ARCLDRLGSPLDAEAALAALLPRLAAYPWPGNVRELENLCERIAVFLLQFDDAEAIRHD
FT                   ALRHECPELFEHPAAMDAPRPERIAQALRQADGNRAQAAAQLGVSRSTLWRWLRQIDAA
FT                   DDGARAT"
FT   misc_feature    218848..219522
FT                   /note="HMMPfam hit to PF00158, Sigma-54 interaction domain,
FT                   score 8.5e-124"
FT   misc_feature    218920..218961
FT                   /note="PS00675 Sigma-54 interaction domain ATP-binding
FT                   region A signature."
FT   misc_feature    219496..219525
FT                   /note="PS00688 Sigma-54 interaction domain C-terminal part
FT                   signature."
FT   misc_feature    219646..219756
FT                   /note="HMMPfam hit to PF02954, Bacterial regulatory
FT                   protein, Fis family, score 3.4e-08"
FT   CDS             219913..220614
FT                   /transl_table=11
FT                   /gene="marC"
FT                   /locus_tag="BPP2806"
FT                   /product="putative multiple antibiotic resistance protein"
FT                   /note="Similar to Escherichia coli multiple antibiotic
FT                   resistance protein MarC or B1529 SWALL:MARC_ECOLI
FT                   (SWALL:P31123) (221 aa) fasta scores: E(): 3.3e-17, 49.35%
FT                   id in 231 aa, and to Pseudomonas aeruginosa hypothetical
FT                   protein Pa5205 SWALL:Q9HTY5 (EMBL:AE004933) (233 aa) fasta
FT                   scores: E(): 5.4e-47, 61.77% id in 225 aa"
FT                   /db_xref="InterPro:IPR002771"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6U3"
FT                   /protein_id="CAE38098.1"
FT                   /translation="MIIEYLQLVGLGLVTMLPVANPLTSTTLLLALGSGFTRDERNRQI
FT                   GRATVYVAAIILASFYAGNAIISSFGISIPGLRIAGGLIVAYIGFTMLFPATSQNEAQA
FT                   QVEMAPDDPHIQVPGAAHTGPRPRDISFVPLALPGTAGPGTIALIISSASTLHSHGGIT
FT                   LIHHFAVITVTLLLALLFWACLRSAERVMRMLGQSGIDAISRVMGFLLICMGVQFIIDG
FT                   VFELIRHPPGA"
FT   misc_feature    219928..220593
FT                   /note="HMMPfam hit to PF01914, MarC family integral
FT                   membrane protein, score 3.4e-46"
FT   misc_feature    join(219955..220023,220060..220128,220138..220206,
FT                   220303..220371,220399..220467,220528..220596)
FT                   /note="6 probable transmembrane helices predicted for
FT                   BPP2806 by TMHMM2.0 at aa 15-37, 50-72, 76-98, 131-153,
FT                   163-185 and 206-228"
FT   CDS             complement(220803..222374)
FT                   /transl_table=11
FT                   /locus_tag="BPP2807"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein Pa2200 SWALL:Q9I1R7 (EMBL:AE004646) (531 aa) fasta
FT                   scores: E(): 2.2e-35, 33.33% id in 519 aa, and to Brucella
FT                   melitensis Rtn protein Bmeii0904 SWALL:Q8YBJ6
FT                   (EMBL:AE009724) (530 aa) fasta scores: E(): 3.4e-27, 26.04%
FT                   id in 503 aa"
FT                   /db_xref="InterPro:IPR001633"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6U2"
FT                   /protein_id="CAE38099.1"
FT                   /translation="MGMTQGHVMSGREANNMTIRYLPVRHRLLFFVVPVLACGLVAAAI
FT                   GYAWKGMHATSMVEHDNAHFLARSLDIAREQLDIVLEARVAPAACSEGDLAALRQRVFR
FT                   SKYVADIARIDNGALRCSAVWGVWRHPHVLPRGGRTVRDGVFLWQNMENPIQPELSGDV
FT                   LASERLAVFTIPGIFDDIVRRAGGQKTTLYSRKQGHVYKVFGASAAEDWQGWGAGFQLV
FT                   RTAAACAPVGGPDICVETTARVDARGAVAVAGLGGMALGAGVGLIVFLWWRRSFGLRAS
FT                   LVDALRKGKIQVAYQPLRVLDSGRMAGVEALARWTYDEVGPISPVTFLGWVEAMGLRQP
FT                   FTRYIVQAALDGMKTRMAGDAPFYLSINVFPEDLEDESFLDFLTQSVRERELSPGSVVL
FT                   EVTESAVFSTASPSVLFRRFRAAGFRIFLDDFGVGYSNLGNIIRWEVDGIKLDRIFMQS
FT                   LGDFDSAAPVLDQVIEMARQLDLHLVIEGIEVRSQADYIFKRAPHAVGQGWLFGRPGPA
FT                   CALPAA"
FT   misc_feature    complement(220818..221555)
FT                   /note="HMMPfam hit to PF00563, EAL domain, score 1.5e-51"
FT   misc_feature    complement(join(221559..221624,222228..222293))
FT                   /note="2 probable transmembrane helices predicted for
FT                   BPP2807 by TMHMM2.0 at aa 43-65 and 266-288"
FT   CDS             222767..222901
FT                   /transl_table=11
FT                   /locus_tag="BPP2808"
FT                   /product="putative phage-related protein"
FT                   /note="Weakly similar to Maize streak virus mouvement
FT                   protein V1 SWALL:Q9WKC9 (EMBL:AJ012639) (71 aa) fasta
FT                   scores: E(): 6.1, 39.28% id in 28 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6U1"
FT                   /protein_id="CAE38100.1"
FT                   /translation="MKRRRKEDADERVSWSSYLHVAGIALVIMVCTVELVEWLLARGS"
FT   CDS             223017..223268
FT                   /transl_table=11
FT                   /locus_tag="BPP2809"
FT                   /product="putative exported protein"
FT                   /note="no significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6U0"
FT                   /protein_id="CAE38101.1"
FT                   /translation="MYVQIWSRWAASLSLVALVSGCSWVGLGDSDRKSTASRVSDECRW
FT                   NRSGCIYEGSYEADERDYAEARRLNQAEMARLRRSAGN"
FT   misc_feature    223017..223091
FT                   /note="Signal peptide predicted for BPP2809 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.953) with cleavage site
FT                   probability 0.566 between residues 25 and 26"
FT   misc_feature    223050..223082
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(223315..224478)
FT                   /transl_table=11
FT                   /locus_tag="BPP2810"
FT                   /product="probable acyl-CoA dehydrogenase"
FT                   /note="Similar to Caulobacter crescentus acyl-CoA
FT                   dehydrogenase family protein Cc2328 SWALL:Q9A5W9
FT                   (EMBL:AE005903) (387 aa) fasta scores: E(): 5.1e-94, 60.62%
FT                   id in 386 aa, and to Brucella melitensis acyl-CoA
FT                   dehydrogenase Bmeii0492 SWALL:Q8YCN6 (EMBL:AE009685) (395
FT                   aa) fasta scores: E(): 4.2e-63, 43.76% id in 393 aa"
FT                   /db_xref="GOA:Q7W6T9"
FT                   /db_xref="HSSP:1JQI"
FT                   /db_xref="InterPro:IPR006092"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6T9"
FT                   /protein_id="CAE38102.1"
FT                   /translation="MDFRLSDEQEQIKSAIERLCEPFDDEYWFNRDREGGFPHEFHQAL
FT                   AQAGWLGIAMPQAYGGAGLGISDAALMMHTIAATGAGLSGASAVHMNIFGLHPVVVFGT
FT                   AQQKQRWLPPLIAGQDKACFGVTEPNTGLNTLKLKTRAVRQGDHYVVTGQKVWISTAQV
FT                   ANKILLLARTTPIEACTGSEGLSLFYTDLDRAAIEVHEIEKMGRKCVDSNQLFIDNLRI
FT                   PVEDRIGEEGKGFSYIQHGLNPERILIAAEAVGLGRAALRKAAGYAREREVFDRPIGKN
FT                   QGVQHPLARSWMELEAAHLMVQKAAWLYDQQQPCGAEANSAKFLGAEACYAACENAIFT
FT                   HGGMGYAKEYHVERYLREAWIPRLAPVSPQMILSFIAEKVLGLPKSY"
FT   misc_feature    complement(223336..223785)
FT                   /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase,
FT                   C-terminal domain, score 5.8e-58"
FT   misc_feature    complement(223795..224106)
FT                   /note="HMMPfam hit to PF02770, Acyl-CoA dehydrogenase,
FT                   middle domain, score 1.4e-11"
FT   misc_feature    complement(224110..224466)
FT                   /note="HMMPfam hit to PF02771, Acyl-CoA dehydrogenase,
FT                   N-terminal domain, score 7e-12"
FT   CDS             complement(224515..225654)
FT                   /transl_table=11
FT                   /locus_tag="BPP2811"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein Pa3592 SWALL:Q9HY34 (EMBL:AE004779) (395 aa) fasta
FT                   scores: E(): 3.7e-91, 62.6% id in 361 aa, and to Rhizobium
FT                   meliloti putative conserved membrane-anchored protein
FT                   Rb0848 or Smb21182 SWALL:Q92V66 (EMBL:AL603645) (394 aa)
FT                   fasta scores: E(): 6.8e-57, 44.06% id in 379 aa"
FT                   /db_xref="GOA:Q7W6T8"
FT                   /db_xref="HSSP:1PQY"
FT                   /db_xref="InterPro:IPR003673"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6T8"
FT                   /protein_id="CAE38103.1"
FT                   /translation="MAAGSALDGIRVVDLSRVLSGPYCTQILADHGADVVKIEPPGGDE
FT                   TRAWGPPFAGEVAAYYQGINRNKRGAWLDLSSEAGRAALLAQLDGADVLVENFKCGTME
FT                   RWGLGFEVLSGRFPRLIHCRVSGFGADGPMGGMPGYDAAIQAMSGIMSVNGDPGGEPTR
FT                   VGVPIVDMVTGMNAAIGVLLALQERQRSGRGQFVDIALFDCALSILHPHTASHFAAGVT
FT                   PGRTGNAHPNITPYDIFPTATDPLFLAVGNDRQFRILCEALGAAALADDPRYASNGQRC
FT                   ANRQALTRSLAALLSRHAAQGLAERLIRAGVPCSSVLDIPQALRHPQAVHREMVVQRDG
FT                   YAGVASPVKLGRTPARYRMPPPRFGQHQLELDFPAASGR"
FT   misc_feature    complement(224875..225444)
FT                   /note="HMMPfam hit to PF02515, CAIB/BAIF family, score
FT                   3.1e-61"
FT   CDS             complement(225681..227114)
FT                   /transl_table=11
FT                   /gene="gabD"
FT                   /locus_tag="BPP2812"
FT                   /product="succinate-semialdehyde dehydrogenase [NADP+]"
FT                   /EC_number="1.2.1.16"
FT                   /note="Similar to Escherichia coli succinate-semialdehyde
FT                   dehydrogenase [NADP+] GabD or B2661 SWALL:GABD_ECOLI
FT                   (SWALL:P25526) (482 aa) fasta scores: E(): 6.9e-54, 37.65%
FT                   id in 470 aa, and to Rhizobium loti aldehyde dehydrogenase
FT                   Mlr5236 SWALL:Q98CA3 (EMBL:AP003006) (479 aa) fasta scores:
FT                   E(): 2.3e-98, 55.1% id in 470 aa"
FT                   /db_xref="GOA:Q7W6T7"
FT                   /db_xref="HSSP:1A4S"
FT                   /db_xref="InterPro:IPR016162"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6T7"
FT                   /protein_id="CAE38104.1"
FT                   /translation="MRTITSLIDGQWAGGAGDSENINPSDLSAPVCLVAQASAQQAAQA
FT                   VEAARRAQPGWAATGLAARAQILKDIGRGIVANSQQLAHILASEQGKTLPEARGEVQRA
FT                   ADIFDYYAGEVFRLGGEMFPSIRAGVEVEISREPLGVVALITPWNFPIAIPAWKTAPAL
FT                   ACGNAVVLKPSEFTPATAVMLAEIIRAAGVPDGVFNLVLGTGADVGQVLTGHPAVAGVS
FT                   FTGSSATGRKIAASAVAGHKKLQMEMGGKNPLVVLDDADLEIALACALDGAFHATGQRC
FT                   TASSRLIVTPGIHDRFVQELAQRVMALNVGHALDERSQIGPVSNGAQFDKDLSYIALAR
FT                   DEAQRVIGGAALQRAQRGYYLQPCLALDVSLDARIAREEVFGPLACVLRAQDYEHALAI
FT                   ANDTEYGLSAGICTQSLKHATHFRRHVQSGLAMVNMPTSGVDFHVPFGGRGASSYGSSE
FT                   QGHYAREFFTSLKTSYIRP"
FT   misc_feature    complement(225687..227084)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase
FT                   family, score 2.4e-167"
FT   misc_feature    complement(226260..226295)
FT                   /note="PS00070 Aldehyde dehydrogenases cysteine active
FT                   site."
FT   misc_feature    complement(226356..226379)
FT                   /note="PS00687 Aldehyde dehydrogenases glutamic acid active
FT                   site."
FT   CDS             complement(join(227125..228768,228770..228805))
FT                   /pseudo
FT                   /transl_table=11
FT                   /gene="ilvB"
FT                   /locus_tag="BPP2813"
FT                   /product="acetolactate synthase large subunit (pseudogene)"
FT                   /EC_number="2.2.1.6"
FT                   /note="Similar to Escherichia coli acetolactate synthase
FT                   isozyme I large subunit IlvB or B3671 SWALL:ILVB_ECOLI
FT                   (SWALL:P08142) (562 aa) fasta scores: E(): 2.1e-34, 28.87%
FT                   id in 568 aa, and to Pseudomonas aeruginosa probable
FT                   decarboxylase Pa3506 SWALL:Q9HYA3 (EMBL:AE004771) (560 aa)
FT                   fasta scores: E(): 3.5e-80, 44.84% id in 562 aa"
FT                   /db_xref="PSEUDO:CAE38105.1"
FT   misc_feature    complement(227212..227733)
FT                   /note="HMMPfam hit to PF02775, Thiamine pyrophosphate
FT                   enzyme, C-terminal TPP binding domain, score 3.5e-19"
FT   misc_feature    complement(227764..228231)
FT                   /note="HMMPfam hit to PF00205, Thiamine pyrophosphate
FT                   enzyme, central domain, score 3e-16"
FT   misc_feature    complement(228277..228753)
FT                   /note="HMMPfam hit to PF02776, Thiamine pyrophosphate
FT                   enzyme, N-terminal TPP binding domain, score 7.2e-20"
FT   variation       complement(228769)
FT                   /note="(T)1 in parapertussis; (T)3 in bronchiseptica"
FT   CDS             complement(228818..229792)
FT                   /transl_table=11
FT                   /locus_tag="BPP2814"
FT                   /product="putative exported protein"
FT                   /note="Similar to Rhizobium meliloti hypothetical protein
FT                   Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa)
FT                   fasta scores: E(): 3.1e-40, 38.31% id in 321 aa, and to
FT                   Comamonas testosteroni OrfJ protein SWALL:Q9RHM9
FT                   (EMBL:AB029044) (326 aa) fasta scores: E(): 4.2e-38, 37.92%
FT                   id in 327 aa"
FT                   /db_xref="GOA:Q7W6T6"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6T6"
FT                   /protein_id="CAE38106.1"
FT                   /translation="MKIRFKTLVAAGWLGALAFGTAVAQGGYPNQPIRLMVGYSPGGSV
FT                   DIVAREYAQHLGRLLDQSVVVENRGGASGTIAAQAVARAPADGYTLFFTASPTVTITPA
FT                   LQKTPFDPVKDFQPVASVVSYTNVLLVNAQAPYQDIQALVAAAKADPGKLTYGSAGVGA
FT                   SNHLSGKLFEDNANIKLSHVPYKGNAPAQSDLIADRITMLFDLNTTAKSLVESGRVKAL
FT                   AVTSGQRNPMFKDVPTMAEAGYPNFIFDGWLGILAPAGTPEAVVKTLADATRKILADKA
FT                   FSERMQASGYTITASSPQELGAIVAREGKQFQDLAERANLRQF"
FT   misc_feature    complement(228830..229651)
FT                   /note="HMMPfam hit to PF03401, Uncharacterized protein
FT                   family, UPF0065, score 3.8e-98"
FT   misc_feature    complement(229721..229792)
FT                   /note="Signal peptide predicted for BPP2814 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.972 between residues 24 and 25"
FT   CDS             complement(230153..231118)
FT                   /transl_table=11
FT                   /locus_tag="BPP2815"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2103"
FT                   /db_xref="GOA:Q7W6T5"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6T5"
FT                   /protein_id="CAE38107.1"
FT                   /translation="MKNVLWMALLASVLSEGALAAEFPTHPVTLVVPLAAGSTADILAR
FT                   AIQPGLSKALGQTVVVENRPGAGGQLAMSYVAKQAADGYTIVMGSNGTWAINLGLYEKL
FT                   PYRPVEDFAPVAYLAGGSNILIVKPSSPYTSVAALIAAMKAAPGKLTYSSGGNGTTHHL
FT                   SSELLKSLTNTQAMHIPYGGAPQGVSAVMAGETDFGFYNTPSVSSLVKERKLRALAATG
FT                   TIRTPMLPEVPTMMEAGVAGYVMSVDFGLLAPAGTPDDVVLKLNRAANAAMAQPKLQET
FT                   LKNYGFEVFEQGTPGDMAKRVNADIDKWVPIVRQAKAKVD"
FT   misc_feature    complement(230165..230992)
FT                   /note="HMMPfam hit to PF03401, Uncharacterized protein
FT                   family, UPF0065, score 1e-104"
FT   misc_feature    complement(231059..231118)
FT                   /note="Signal peptide predicted for BPP2815 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.999 between residues 20 and 21"
FT   CDS             complement(231256..232161)
FT                   /transl_table=11
FT                   /locus_tag="BPP2816"
FT                   /product="putative lysR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2102"
FT                   /db_xref="GOA:Q7W6T4"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6T4"
FT                   /protein_id="CAE38108.1"
FT                   /translation="MMDAIESVSLRQLRALVSIGDTASFTGAAEQLGMSQPSVSHLIRR
FT                   LEAEVGQTLVVRGREVTLTRQGQALADIARRAILSIDGAVRESRDQSALKSGSVSVAVG
FT                   HVSAATLLPRILVAFNQRHPNIELIVVDCVVEQIRNKLLSHEADVGLGAVVGSDDSRLS
FT                   TELLWDGGVSLFMRDDHYLADREAIDAAILAELPCIQLNPNAPPWLVISRLLVANGIHP
FT                   RVDQRVVLVSTAVGMIQAGMGVAMLPHAAAAQAPRGVRAVPIRNPFLSWPISLVRLSNH
FT                   PLSPAAQAFAAIARDVLRRF"
FT   misc_feature    complement(231265..231888)
FT                   /note="HMMPfam hit to PF03466, LysR substrate binding
FT                   domain, score 3.4e-42"
FT   misc_feature    complement(231958..232134)
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family, score 2.8e-21"
FT   misc_feature    complement(232000..232092)
FT                   /note="PS00044 Bacterial regulatory proteins, lysR family
FT                   signature."
FT   CDS             232203..234506
FT                   /transl_table=11
FT                   /locus_tag="BPP2817"
FT                   /product="hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2101"
FT                   /db_xref="InterPro:IPR005829"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6T3"
FT                   /protein_id="CAE38109.1"
FT                   /translation="MGVASIAWQKPLLHTETAMPHSDYARHLMDSATIDPTGAFEAGSF
FT                   ASFTLTYTAGYFGIDDTGSIKIVHRFASDMGKPQFTDPQGWNYTTVEAGNGAVLHVEYD
FT                   GKRNIRPWDKTLFIRVVRGYLEEGEQIIVRFGDTRQGSPGMRVQTFHEPTFEFKVLVDA
FT                   FATYNYVEIEASPTISVVAGPPVRYKAVLPSLSLAGQPLRLGFKGEDKWGNPSDQAQGR
FT                   YTLRSNLRMARMPESFEMAAGAYAHAIEGIVAAETGDLRLEVLHGDRVVARSNPCRVAA
FT                   QAARNHYWADLHGQSEETIGTNSAEELILFARDRAFLDAMSHQGNDFQITQEFWEHLNT
FT                   LTARYDEPSRFVIFPGYEWSGNTGLGGDRNVLYLHEGRPLHRSSHALVDDLSDLDSDAN
FT                   SADALFQAIKDEDAVVFAHIGGRYADITLSHDPRIERSIEIHSDWGTFEWLLEDAFKQG
FT                   YRVGILANSDGHKGRHGASHPGASLFGAYGGLSCLIADTLSRQSLAECLRQRRHYATTG
FT                   CRAYLDVAAHFDAPARRYAEDPRLAPDAASTQVRSADMGAILACDTDMVEFEFDLATEA
FT                   PIESVEVRNRMDVVQTLRPFKPADLGRRIRIVWEGSEYRGRGRQTVWDGSATLQDNAFV
FT                   DPKPINFWNLDKTLQQPQPNHLCWQSLTTGGFSGVDVMLEDAGRGTLCIDTDLIQARIP
FT                   VADIGLEPLVFENGGIRRRLQVFRLPDENPACHLKARVQVPLHTEQDNALYLRATTEDG
FT                   FFIYSSPIYIERKA"
FT   misc_feature    233649..233726
FT                   /note="PS00217 Sugar transport proteins signature 2."
FT   CDS             234752..236236
FT                   /transl_table=11
FT                   /locus_tag="BPP2818"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2100"
FT                   /db_xref="GOA:Q7W6T2"
FT                   /db_xref="InterPro:IPR002878"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6T2"
FT                   /protein_id="CAE38110.1"
FT                   /translation="MCCQAALAPGCADAGDNRVSNILAIGVHLPRLRLSRRAMANALGW
FT                   LSGGAGAGKGSRTLAYWDEDSVTMAVAAARHALARQAAPAIDALQFASTTPPFAEPQNA
FT                   AFVRAALRLPATTLTQDVHGTPRAGLLALHMALESGTRTLVAAADLPTALPGSTAEARA
FT                   GDGGAAVLTGDEPGLLRYLGGASLSAPFTDRYRAAGHDYPQEWEERWLREAGYLELVHD
FT                   AIGRALQAASLRPEQVDHFVLPCPVPGVAAAVAAKAGLGQARLASALAENCGDTGAAHA
FT                   FVMLGRALEDAAPGQKVLVAQFGQGATALLFEADEAVAGLAAPVSPALQGGLAEDNYMK
FT                   LLAFRGRIAWDRGLRGRFLVNEALSTAWRNADALLGFVAGRCRETGQVQFPPTRLAATG
FT                   GFHLDTQEPWPLADRGGRIATFTADLLAFSPCPPNCYGLVDIDGGGRVLMEFTDPQASQ
FT                   LEAGAAVAFALRIKDLDPQTGYRRYFWKALAAPTAD"
FT   CDS             236247..237443
FT                   /transl_table=11
FT                   /locus_tag="BPP2819"
FT                   /product="putative thiolase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2099"
FT                   /db_xref="GOA:Q7W6T1"
FT                   /db_xref="InterPro:IPR002155"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6T1"
FT                   /protein_id="CAE38111.1"
FT                   /translation="MATGIKDRVAILAMGCSRFGERWDVGQEELMVEAYAEALASVGIE
FT                   PRAIEAAWYSSHYDDIGAGKAGTPMAMALRLPDIGVTRVENFCAGGTEAFRGAVYAVAS
FT                   GAADIALALGVEKLKDTGFAGLPLASRGTLAPMYLPTHSNPGNFAQLARAYQARHGVSR
FT                   EDLKAAMAHTSVKSHANALHNPKAHLRKAISREQAAGAPLVADPIGLFDCCPVSDGAAC
FT                   AIVTTPEIARSLNRGPLVLVKAIQLATSNGWELQQSDWDGSYVHTTRVAARKAYAEAGI
FT                   DDPRAQLSLTELHDCFSITELVTLEDIGLAEPGTAWRGMLDGRFDADGALPCQIDGGLK
FT                   CFGHPVGASGLRMLYEAWLQLSGRAGARQLPAPSLALTHNLGGAPAQNVCSITILGAA"
FT   misc_feature    236946..237419
FT                   /note="HMMPfam hit to PF02803, Thiolase, C-terminal domain,
FT                   score 0.001"
FT   CDS             237516..238835
FT                   /transl_table=11
FT                   /locus_tag="BPP2820"
FT                   /product="putative acyl-CoA ligase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2098"
FT                   /db_xref="GOA:Q7W6T0"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6T0"
FT                   /protein_id="CAE38112.1"
FT                   /translation="MLHPEIELLDRDGILKIQRERLARLGQRLQHSPQWREHFASVGMT
FT                   PGDLASPDAFEHLPFLQKADLRQQYPYPFLTVPLEDVERFVATSGTTGLPVMFGLTRRD
FT                   LHELLPSQTARLLAAAGVRRGARAYQGYGYGLWIGGLALDQGFKEMDCVNFPLGPGRGD
FT                   LAARWMRDHAYEVASMSPLWLMSLAQAARAQGINPKTDWALRTAILGGQSVSAEFRAQL
FT                   EAEMPEGFVSHNIYGTTEAGGPILAISTPYTHADDELHLINEDTVLTEILDPVTLKPVS
FT                   EGEVGEIVITTLTKEASPVIRWRTHDLVRLSSHPYDCPSGRRGMRKIGRIIGRSDDMIK
FT                   FKGVIVFPSQIEDVITGVAGVVKEAWQIYIDKECMTIGTMTVAIEASAQAGRPAEQLSH
FT                   EVGREIHARLGMKVCVECHPEGTLPRYEAKAVRVLHRPEA"
FT   misc_feature    238755..238772
FT                   /note="PS00190 Cytochrome c family heme-binding site
FT                   signature."
FT   CDS             join(238832..239230,239232..239645)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP2821"
FT                   /product="putative esterase (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2097"
FT                   /db_xref="PSEUDO:CAE38113.1"
FT   CDS             complement(239676..240848)
FT                   /transl_table=11
FT                   /locus_tag="BPP2822"
FT                   /product="putative fatty-acyl-CoA racemase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2096"
FT                   /db_xref="GOA:Q7W6S9"
FT                   /db_xref="HSSP:1PQY"
FT                   /db_xref="InterPro:IPR003673"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6S9"
FT                   /protein_id="CAE38114.1"
FT                   /translation="MMAQGEGMAPALQGLRIIEMVGLGPAPFAAMMLADHGADVVRVHA
FT                   AHRKGDFPLLDSRFDVLARGRRSLALDLRAPGASDLLLELVGAADGLIEGFRPGVMERM
FT                   GLAPEACLRRQPRLVYGRMTGWGQQGPLARQAGHDLNYLGLTGALHAIGPSDRPPPVPL
FT                   NYVADFGGGGMLLAFGMLAALLAVRGGAPGQVVDAAMVDGAGLLASMFWGFRAGGGWSD
FT                   RREGNLLDGGAYFYATYACADGRFLAVACVERRFHDLLVERLGLDPAVYTHDRDPAQWP
FT                   ALRARLAALFATRPRDHWAALFEDSDACVTPVLDWREAAHHPHAAARAGYIDVEGVTQP
FT                   APAPRLSATPARQPAAAPAVGAHSVEVLHEWGLAPERVASALDSGLIVQA"
FT   misc_feature    complement(240069..240644)
FT                   /note="HMMPfam hit to PF02515, CAIB/BAIF family, score
FT                   1e-60"
FT   misc_feature    complement(240126..240158)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(240845..241159)
FT                   /transl_table=11
FT                   /locus_tag="BPP2823"
FT                   /product="putative ferredoxin"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2095"
FT                   /db_xref="GOA:Q7W6S8"
FT                   /db_xref="HSSP:1E9M"
FT                   /db_xref="InterPro:IPR018298"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6S8"
FT                   /protein_id="CAE38115.1"
FT                   /translation="MTTIIFIASNEARHVVQADDGLSLMECARRANVPGIAAECGGACT
FT                   CATCHVHVGQEWMQAVGEPGDMERDMLDFANDVRAESRLSCQITVAPALEGLTVRVAPQ
FT                   "
FT   misc_feature    complement(240884..241141)
FT                   /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster
FT                   binding domain, score 3.9e-07"
FT   misc_feature    complement(241007..241024)
FT                   /note="PS00190 Cytochrome c family heme-binding site
FT                   signature."
FT   misc_feature    complement(241010..241042)
FT                   /note="PS00814 Adrenodoxin family, iron-sulfur binding
FT                   region signature."
FT   CDS             complement(241181..241903)
FT                   /transl_table=11
FT                   /locus_tag="BPP2824"
FT                   /product="putative 3-oxoacyl-CoA or-ACP reductase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2094"
FT                   /db_xref="GOA:Q7W6S7"
FT                   /db_xref="HSSP:1Q7B"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6S7"
FT                   /protein_id="CAE38116.1"
FT                   /translation="MPRHALVTGGANGIGAATVAQLCRDGLRVTFCDRDAQAGASVAQA
FT                   TGARFVALDATDAEAVAGFCAGAAPFDILVNNVGADQHAFFSRTTPQDWRALLAVNLES
FT                   AFAFTLGVLPGMQAARFGRIVNVSSEAGRLGSRGGAVYAAAKAGLLGFTRSIARENARY
FT                   GVTANAVLPGPVDTPMLARAVDVAGAQMRVDLEALTLLRRLGRPEEVAAAIAFLCSEAA
FT                   GFITGEALGVSGGMGCGA"
FT   misc_feature    complement(241196..241903)
FT                   /note="HMMPfam hit to PF00106, short chain dehydrogenase,
FT                   score 1.3e-66"
FT   misc_feature    complement(241433..241519)
FT                   /note="PS00061 Short-chain dehydrogenases/reductases family
FT                   signature."
FT   CDS             complement(241903..242718)
FT                   /transl_table=11
FT                   /locus_tag="BPP2825"
FT                   /product="enoyl-CoA hydratase/isomerase-like protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2093"
FT                   /db_xref="GOA:Q7W6S6"
FT                   /db_xref="HSSP:1DCI"
FT                   /db_xref="InterPro:IPR001753"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6S6"
FT                   /protein_id="CAE38117.1"
FT                   /translation="MTMTTANPETWIGEGPVLLDYADHVARITLNRPDAANGMNIEFMK
FT                   ALHEAVMRCHREPDVRVVLLRGAGKHFCAGGDVREFASKGEGLGDFLREVTAWLQMAIG
FT                   ALIRLDAVVVAQVQGYAAGGGLGLVCAADIVVAAQGARFLAGATRVGMAPDAGSSVILP
FT                   HLIGFRRAMEMMLSNRTVGADEALEMGLVNQVVADAELDESAARLAATYAAGAPLAQAA
FT                   TKRLLWNTLQVERALPEEARTVSTLSATADSREGLAAVIGKRQPVFRRH"
FT   misc_feature    complement(242128..242643)
FT                   /note="HMMPfam hit to PF00378, Enoyl-CoA
FT                   hydratase/isomerase family, score 1.4e-45"
FT   CDS             complement(242723..243250)
FT                   /transl_table=11
FT                   /locus_tag="BPP2826"
FT                   /product="putative dioxygenase component"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2092"
FT                   /db_xref="GOA:Q7W6S5"
FT                   /db_xref="InterPro:IPR000391"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6S5"
FT                   /protein_id="CAE38118.1"
FT                   /translation="MTARPETRPAADDLQALDELTLHHRVSQFLYHEARLQDTHDYQGW
FT                   ESLWEDDAIYWIPANGDDIDPEQKMSVIYDNRSRIRVRIEQLLTGRRHTQTPRSALARL
FT                   ISNIEIVDVAGQEVTALANVLIYEDNLRGETHWAARNEYRLRLVDGAFRLVRKKIALVN
FT                   GAKPIFTLSFLV"
FT   misc_feature    complement(242738..243157)
FT                   /note="HMMPfam hit to PF00866, Ring hydroxylating beta
FT                   subunit, score 3.3e-10"
FT   CDS             complement(243256..244521)
FT                   /transl_table=11
FT                   /locus_tag="BPP2827"
FT                   /product="putative dioxygenase hydroxylase component"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2091"
FT                   /db_xref="GOA:Q7W6S4"
FT                   /db_xref="HSSP:1EG9"
FT                   /db_xref="InterPro:IPR017941"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6S4"
FT                   /protein_id="CAE38119.1"
FT                   /translation="MRAMSSIRNEIDYRALIEPTRINSRLYVDPEIFQEELDKIWHRTW
FT                   VYVGHVSEVPNKNDYVTKSIGTTPVLLLRDRDGEIRLLLNKCPHRGNQLCAYKEGNRST
FT                   FTCPYHSWTFSNTGDLMGYALADGYEGASKAGVGLGKVARIGIYRGFVFGSFAETGPSL
FT                   DEHLGGAKAAIDQLCDNSPNGELDLRAGFLQHRAKANWKFMLENETDGYHPGFVHGSIF
FT                   QVTNSPIANLYGKDSTALTRDYGNGHTEFDLRPEWRRIDKPLYWFGSSVERMADYAVAM
FT                   DQAYGAERARQIMIDGSPHTMIFPNLFIAEIQIFVLQPVSVEETIQHVTAVQFKDAPDI
FT                   NRRLRQQTMGSVGPAGLLLADDTEMYERNHRGAKIRDPEWLMLTRGLHRERKDENGYTV
FT                   GHSTDEVPQRGIWRHYFKLMQE"
FT   misc_feature    complement(243262..244035)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF00848, Ring hydroxylating alpha
FT                   subunit (catalytic domain), score 6e-11"
FT   misc_feature    complement(244075..244161)
FT                   /note="PS00402 Binding-protein-dependent transport systems
FT                   inner membrane comp. sign."
FT   misc_feature    complement(244093..244392)
FT                   /note="HMMPfam hit to PF00355, Rieske [2Fe-2S] domain,
FT                   score 9.8e-24"
FT   misc_feature    complement(244192..244263)
FT                   /note="PS00570 Bacterial ring hydroxylating dioxygenases
FT                   alpha-subunit signature."
FT   CDS             244873..246012
FT                   /transl_table=11
FT                   /locus_tag="BPP2828"
FT                   /product="putative ABC-transporter substrate-binding
FT                   protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2090"
FT                   /db_xref="InterPro:IPR001828"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6S3"
FT                   /protein_id="CAE38120.1"
FT                   /translation="MNTSKAIVAGLLALGCALPAAAEIRLGASVSATGPAGILGDPEAR
FT                   TLELLVQELNARGGIKGEQIKLVLYDDGGDANKARTFATRLVEDDEVQAIIGGTTTGTS
FT                   MSILSVAEDAKVPFISLAGAIDIIDPVKPYTFKTPHTDRMACQKVFADMRKNGWTKVAL
FT                   IGSTDGFGASMQAQCKAVAGQYGIELVDSETYEPKDADMTAQLTKIRGIPGVQAVLNPG
FT                   FGQSAAVLARNYRQLGMSLPFYASHGVASQGYIDLAGADVVEGFRLPGTALLVADLLPA
FT                   SDPQAAPSIAYKKAFEAKTGAPVGTFGGYAHDAFLILVDALNRADSTKPTAIRDAIEKT
FT                   SKLAGTTGVYTFSPTDHLGLDLSAFRVLEIRGGKWKVVD"
FT   misc_feature    244873..244938
FT                   /note="Signal peptide predicted for BPP2828 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.953 between residues 22 and 23"
FT   misc_feature    244888..244920
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             246090..246962
FT                   /transl_table=11
FT                   /locus_tag="BPP2829"
FT                   /product="putative ABC-transporter permease component"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2089"
FT                   /db_xref="GOA:Q7W6S2"
FT                   /db_xref="InterPro:IPR001851"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6S2"
FT                   /protein_id="CAE38121.1"
FT                   /translation="MSEFMQFIFSGVTVGAVYALVALGFAIIFNATGVVNFAQGEFVML
FT                   GGMITVFAHGAGLALPLAALLAIAVTAATGVALNRLAIEPARGAPVVSLIIITIGASIF
FT                   IRGAVQSLFGKQIHSLPAFSGDDPIHVLGATILSQSLWMIGGAVAVFIVLWLFFTRTLI
FT                   GRAVLATSNNRLAARLVGINTRFIMTLSFALSAAIGALAGVLITPITLTSYDVGLTLAL
FT                   KGFAAAMLGGMGSPKGALAGGILLGLLESLTAGYLSSQYKDAAAFLTILAVLFFMPQGL
FT                   FGHKSTDRV"
FT   misc_feature    246099..246947
FT                   /note="HMMPfam hit to PF02653, Branched-chain amino acid
FT                   transport system / permease component, score 5.8e-36"
FT   misc_feature    join(246108..246176,246255..246323,246360..246428,
FT                   246495..246563,246657..246725,246801..246860,
FT                   246879..246938)
FT                   /note="7 probable transmembrane helices predicted for
FT                   BPP2829 by TMHMM2.0 at aa 7-29, 56-78, 91-113, 136-158,
FT                   190-212, 238-257 and 264-283"
FT   CDS             246966..247922
FT                   /transl_table=11
FT                   /locus_tag="BPP2830"
FT                   /product="putative ABC-transporter permease component"
FT                   /note="ortholog of Bordetella pertussis (BX470248)
FT                   BP2088+BP1648"
FT                   /db_xref="GOA:Q7W6S1"
FT                   /db_xref="InterPro:IPR001851"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6S1"
FT                   /protein_id="CAE38122.1"
FT                   /translation="MRISSKHWTLIVLAALIAIAPLFFPSGYYFRVGSTIFVNALAVTG
FT                   IVILTGYAGQISLGHAGFAGIGGYACALAPVHLGLPSALSVVLGAAVSGALAWLVGRPI
FT                   LRLKGYYLGVASLGFGILVAMVLNNERQLTKGPDGIAVPDPGLRSLLKGWSLDLSNGQF
FT                   WYAMTGIALVIGAWLALNLYHSPTGRALRALHGSEIAAGTVGIDVAGAKLKAFVVSAVY
FT                   ASVSGSLLALQNRFITPDIAGFMHSIEMVTMAVLGGVGSVAGAIFGASLLTLLPQVLTV
FT                   FADYEPLILGLTMMLVMIFLPEGLVPSIMRTIRGRKK"
FT   misc_feature    246966..247091
FT                   /note="Signal peptide predicted for BPP2830 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.999) with cleavage site
FT                   probability 0.795 between residues 42 and 43"
FT   misc_feature    join(246993..247052,247071..247139,247197..247265,
FT                   247284..247352,247446..247514,247716..247784,
FT                   247827..247895)
FT                   /note="7 probable transmembrane helices predicted for
FT                   BPP2830 by TMHMM2.0 at aa 10-29, 36-58, 78-100, 107-129,
FT                   161-183, 251-273 and 288-310"
FT   misc_feature    247038..247895
FT                   /note="HMMPfam hit to PF02653, Branched-chain amino acid
FT                   transport system / permease component, score 2.3e-16"
FT   CDS             247919..248701
FT                   /transl_table=11
FT                   /gene="livG"
FT                   /locus_tag="BPP2831"
FT                   /product="high-affinity branched-chain amino acid
FT                   transport, ATP-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1649"
FT                   /db_xref="GOA:Q7W6S0"
FT                   /db_xref="HSSP:1G9X"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6S0"
FT                   /protein_id="CAE38123.1"
FT                   /translation="MSLLEIHGLGITFGGLRAVHDVAFSVEPGEIVSVIGPNGAGKTTL
FT                   FNMISGIYRPGAGRVVLDRDDVTGMAPFRLARRGMSRTFQNLQIFQNMTVLENAIAGFH
FT                   LQEQGALLSDLFNLRASQARARRAEEGARALLQRVGLERAAEREAASLSYGSLKRLEIA
FT                   RALALQPKVLLLDEPAAGCNAVETEEIDHLIAEVAATGVAILLVEHDMKMVMRISSHIV
FT                   VLDHGEKIAEGPPDAISRDPAVIAAYLGTDSQPGDRPC"
FT   misc_feature    248003..248599
FT                   /note="HMMPfam hit to PF00005, ABC transporter, score
FT                   8.3e-50"
FT   misc_feature    248024..248047
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             248695..249396
FT                   /transl_table=11
FT                   /gene="livF"
FT                   /locus_tag="BPP2832"
FT                   /product="high-affinity branched-chain amino acid
FT                   transport, ATP-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1650"
FT                   /db_xref="GOA:Q7W6R9"
FT                   /db_xref="HSSP:1JI0"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6R9"
FT                   /protein_id="CAE38124.1"
FT                   /translation="MLTVQGLRSCYGRIEVLHGIDLQVDSGEIVTVVGANGAGKTTLLR
FT                   CLSGVQPVSAGAITFRGEALAAVPAHRRLARGLAHSPEGRQIFTNLSVEENLRLGAYLY
FT                   ADDRVERDMDDAFQMFPILREKRHLAAGGLSSGQQQMLAMARALMGRPSCLLLDEPSMG
FT                   LAPIIVQQIFDVIRGLKALGVTVLLIEQNAYGALQIADRGYVMETGNITMQGAASALIA
FT                   DPRIRAAYLGI"
FT   misc_feature    248773..249321
FT                   /note="HMMPfam hit to PF00005, ABC transporter, score
FT                   1.8e-49"
FT   misc_feature    248794..248817
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    249094..249138
FT                   /note="PS00211 ABC transporters family signature."
FT   CDS             249635..250237
FT                   /transl_table=11
FT                   /locus_tag="BPP2833"
FT                   /product="putative TetR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1651"
FT                   /db_xref="GOA:Q7W6R8"
FT                   /db_xref="InterPro:IPR012287"
FT                   /db_xref="PDB:3CCY"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6R8"
FT                   /protein_id="CAE38125.1"
FT                   /translation="MARTRSADYENIRDTIIERAAAMFARQGYSETSIGDIARACECSK
FT                   SRLYHYFDSKEAVLRDMLTTHVDSLLERCRQVLYGSNEPKTRFLQIVKLFLEIYATSRD
FT                   RHVVMLTCLDALPEDQRKALIAKQRELIAYVRDALLQLRPDMAANRTLAHVDTMLFFGM
FT                   INWTYTWYKADGSVSPDALAERTVQLFLDGYLNLLSA"
FT   misc_feature    249680..249820
FT                   /note="HMMPfam hit to PF00440, Bacterial regulatory
FT                   proteins, tetR family, score 1.5e-13"
FT   CDS             complement(250213..251442)
FT                   /transl_table=11
FT                   /locus_tag="BPP2834"
FT                   /product="putative oxidoreductase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1652"
FT                   /db_xref="GOA:Q7W6R7"
FT                   /db_xref="HSSP:1D7Y"
FT                   /db_xref="InterPro:IPR013027"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6R7"
FT                   /protein_id="CAE38126.1"
FT                   /translation="MAMDSIAIIGAGQAGAALAARLRQAGFQGGIDVFGAESAPPYQRP
FT                   PLSKKYLAGDWEQERLWLRPAQFWREQGIALHLGGTVEALDLASRTLRCGGRRHGWRKL
FT                   ALTTGAAPRPLPAAFAGRSNVFELRNLADVQRLQPAFLAGRRLLVLGGGYIGLETAAVA
FT                   AQAGLSVQVVERASRVLERVACPATAAAIRALHQRHGVLIHEGRTVAGTEGDEALTGVE
FT                   LDNGLRIACDLVVAGVGVAPQTALAEAAGIDCDDGILVDAYGRTSAPDVWAAGDCARFV
FT                   LGGEPARLESVQNAIDQAEAVADDMLGQGRPYQPVPWFWSDQYDMKLQIVGLNRGYDAV
FT                   VSHASAKGESHWYFRADRLISVDALNDGRAYMVGKKLLEAGRAVGRGEVERPGFEPMQL
FT                   LRDQAESRLR"
FT   misc_feature    complement(250588..251430)
FT                   /note="HMMPfam hit to PF00070, Pyridine
FT                   nucleotide-disulphide oxidoreductase, score 6.4e-72"
FT   misc_feature    complement(251386..251442)
FT                   /note="Signal peptide predicted for BPP2834 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.857) with cleavage site
FT                   probability 0.812 between residues 19 and 20"
FT   CDS             251592..251954
FT                   /transl_table=11
FT                   /locus_tag="BPP2835"
FT                   /product="putative translational inhibitor"
FT                   /note="Similar to Yersinia pestis putative translational
FT                   inhibitor protein Ypo0628 SWALL:Q8ZI83 (EMBL:AJ414143) (134
FT                   aa) fasta scores: E(): 4e-06, 30.32% id in 122 aa, and to
FT                   Rhizobium loti hypothetical protein Mll4506 SWALL:Q98DX4
FT                   (EMBL:AP003004) (132 aa) fasta scores: E(): 5.6e-05, 38.65%
FT                   id in 119 aa"
FT                   /db_xref="HSSP:1NQ3"
FT                   /db_xref="InterPro:IPR006175"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6R6"
FT                   /protein_id="CAE38127.1"
FT                   /translation="MPRTALNPDTVFDSLQYGFSQGLIVTGQRRIMLSGQVGVDAQERT
FT                   VGPGLNEQTDAALDNIERVLAAAGAAMRHIIMLRIYICEDARGDQEVVADALRRRFPDN
FT                   PPPSSWIIVSGLSLPE"
FT   misc_feature    251628..251948
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF01042, YjgF family, score 0.00018"
FT   CDS             complement(251992..252309)
FT                   /transl_table=11
FT                   /locus_tag="BPP2836"
FT                   /product="putative membrane protein"
FT                   /note="no significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6R5"
FT                   /protein_id="CAE38128.1"
FT                   /translation="MKTFRYAVGLAGLLVASHAMAQYGVWTKKSANGSWVAPRTGFTSL
FT                   VLSQAEINAFRECVLPGRSGGDNSATKIVETATGKEVKLLDCEAMRAERKAEQDRLNAK
FT                   K"
FT   misc_feature    complement(252235..252291)
FT                   /note="2 probable transmembrane helices predicted for
FT                   BPP2836 by TMHMM2.0 at aa 50-72 and 85-104"
FT   CDS             complement(252543..252950)
FT                   /transl_table=11
FT                   /locus_tag="BPP2837"
FT                   /product="putative phage-related protein"
FT                   /note="Similar to Bacteriophage P27 hypothetical 14.1 kDa
FT                   protein SWALL:Q9MBZ3 (EMBL:AJ249351) (125 aa) fasta scores:
FT                   E(): 9.7e-15, 41.6% id in 125 aa, and to Yersinia pestis
FT                   putative phage-related protein Ypo3676 SWALL:Q8ZAV6
FT                   (EMBL:AJ414158) (133 aa) fasta scores: E(): 1e-17, 42.52%
FT                   id in 127 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6R4"
FT                   /protein_id="CAE38129.1"
FT                   /translation="MGFQLSARDRQRLAGVYPDLAAVVEAAAGAYNGRFTVLEGARSAQ
FT                   RQSRLLAQGVSQTLRSLYIPQPDGWAHAVDLAPLVEGTISWEDWASFKRLAEVMKESAA
FT                   RLEIPLGWGGDWTTLKDGPHFQLPRGWRGKA"
FT   CDS             complement(253287..253664)
FT                   /transl_table=11
FT                   /locus_tag="BPP2838"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2182"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6R3"
FT                   /protein_id="CAE38130.1"
FT                   /translation="MNMEIRPVRTEADYKSALKEISRLMESDPELGTPDGDRLDVLATL
FT                   VQAYEARHYPIDLPDPVEAIKFRMEQGGLTPKDLEPMIGKRNRVYEVLNRKRGLTLPMI
FT                   WRLHTELGIPAESLIRPPAHA"
FT   CDS             complement(253661..253963)
FT                   /transl_table=11
FT                   /locus_tag="BPP2839"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Anabaena sp. hypothetical protein Asl4856
FT                   SWALL:Q8YMS3 (EMBL:AP003597) (85 aa) fasta scores: E():
FT                   4e-20, 62.96% id in 81 aa, and to Rhizobium meliloti
FT                   hypothetical protein R00767 or Smc00822 SWALL:Q92RS9
FT                   (EMBL:AL591784) (98 aa) fasta scores: E(): 3.6e-16, 46.93%
FT                   id in 98 aa"
FT                   /db_xref="InterPro:IPR018669"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6R2"
FT                   /protein_id="CAE38131.1"
FT                   /translation="MRVIALSTLRQFWEKHPAAEQPLKAWVDEASRARWAPPADLKAQY
FT                   RSASVLKNRRVVFKIKGNDYRLIVAVAFKLGIVYVKFVGTHVEYDRVDAETVEME"
FT   misc_feature    complement(253703..253768)
FT                   /note="1 probable transmembrane helix predicted for BPP2839
FT                   by TMHMM2.0 at aa 65-87"
FT   tRNA            complement(254106..254184)
FT                   /note="tRNA Met anticodon CAT, Cove score 66.21"
FT   CDS             complement(254194..256476)
FT                   /transl_table=11
FT                   /gene="rpoD"
FT                   /locus_tag="BPP2840"
FT                   /product="RNA polymerase sigma factor 70"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2184"
FT                   /db_xref="GOA:Q7W6R1"
FT                   /db_xref="HSSP:1IW7"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6R1"
FT                   /protein_id="CAE38132.1"
FT                   /translation="MTKSTGKSPSAIDAATAQSTTAKRAASMAAEKAPAKTAVKVAKPA
FT                   AKTAAKKTATKTVAAKTAAADKPAKTTKARAKKAEDKLADLVGAARPAPSGRRPGRPAK
FT                   NANNDSDAFDDSMDGEGEVLPDLKPPKRGGKRGKADPKDLIVRGPVSPEEYEARRNRLK
FT                   QLIKLGKDRGYLTYGEINDHLPDDLVDAEAIDGIISTFSDMGIAVYDQAPDAETLLMSE
FT                   NAPVASNDDDVEDEAEAALTTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIE
FT                   DGLKHMVMAISACPTTINEILAHITRVREGQAQIDEVVDGLVDPEDGEEYAGAGVTADE
FT                   DEADDGPAGGMSSKQLEDLRVKALAKFDEVSKQFEKMRQSYEKEGYKSDAYLKAQDIIQ
FT                   TELMGIRFTAKMVEKLADTLRAQVEEVRQLERAVLHTCVDRAGMPRSHFLKAFPGNETN
FT                   LQWVLDEVAAAHAYSETLERQIPAVQELQQKLIDLQTRVVLPLKDLKDVNKRMATGEAK
FT                   ARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY
FT                   ATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAQKMDM
FT                   PEDKIRKILKIAKEPISMETPIGDDDDSHLGDFIEDTATLAPSDAALHGSMRDVVKEVL
FT                   DSLTPREAKVLRMRFGIEMSTDQTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADKL
FT                   KSFLEGQ"
FT   misc_feature    complement(254239..254922)
FT                   /note="HMMPfam hit to PF00140, Sigma-70 factor, score
FT                   1.6e-125"
FT   misc_feature    complement(254245..254325)
FT                   /note="PS00716 Sigma-70 factors family signature 2."
FT   misc_feature    complement(254791..254832)
FT                   /note="PS00715 Sigma-70 factors family signature 1."
FT   CDS             complement(257155..259206)
FT                   /transl_table=11
FT                   /gene="dnaG"
FT                   /gene_synonym="dnaP"
FT                   /gene_synonym="parB"
FT                   /locus_tag="BPP2841"
FT                   /product="DNA primase"
FT                   /EC_number="2.7.7.-"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2185"
FT                   /db_xref="GOA:Q7W6R0"
FT                   /db_xref="HSSP:1DD9"
FT                   /db_xref="InterPro:IPR006154"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6R0"
FT                   /protein_id="CAE38133.1"
FT                   /translation="MIPESFIQDLLARVDVVDVVGRYVQLRKGGANLLGLCPFHNEKSP
FT                   SFTVSPTKQFYHCFGCGAHGSAITFLMEHTGASFPEAVRTLAAAVGLTVPEENRSPRQQ
FT                   AESARRKAEVSRHTQVLDAAQAHYLRQLRGSPQAIAYLKQRGLTGEIAAHFGLGWSGTD
FT                   RHGLSHVFDNYEDPVLVEAGLVIESEDGRRYDRFRERVMFPIRNARGSLIGFGGRIIGK
FT                   GEPKYLNSPETPLFSKGHELYGLWEARLAIRQEGQVVVVEGYMDVVGLAQQGIANAVAT
FT                   LGTSTTPDHVKKLLRASDKVIFSFDGDAAGRRAAWRALQACLPVLRDDIAIRFLFLPAE
FT                   HDPDSYVRELGAEAFRTRLGEAVALSRFLLDELASRHTMGEAEGRASCLHEAKPLLAAI
FT                   PECALRVQIERELARLVQLTPEEMAQVLAQQPARPLASAAAPAQASAPAAGREGGPGHA
FT                   DEAPPDWAFEPVHDFEPDAYSVGAVDGEPGMPAAGGWQERKGRQGGDWKGKKGDWKGKK
FT                   GDWKGKKGDWKGRRDNDTGGYEGRRTMPSLARRLLCLLLAHPELVDTMGDQQLEVIDHG
FT                   PHLGLVRDLILLAQTSGARHVGALMEAADPDSDLYVVLKGLRADVLAQEDLPHPQTEWD
FT                   DALRRMEFDAARAEMAKLAESGLATDEARRRYLELSSRIMVLKNAGAH"
FT   misc_feature    complement(258193..258441)
FT                   /note="HMMPfam hit to PF01751, Toprim domain, score
FT                   9.5e-24"
FT   misc_feature    complement(258910..259203)
FT                   /note="HMMPfam hit to PF01807, CHC2 zinc finger, score
FT                   1.1e-58"
FT   CDS             complement(259226..259465)
FT                   /transl_table=11
FT                   /gene="rpsU"
FT                   /locus_tag="BPP2842"
FT                   /product="30S ribosomal protein S21"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2186"
FT                   /db_xref="GOA:Q7W6Q9"
FT                   /db_xref="InterPro:IPR018278"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W6Q9"
FT                   /protein_id="CAE38134.1"
FT                   /translation="MLSIKANHFMPIVRLKENEPFEAALRRFKRTIEKTGLLTELRSRE
FT                   FYEKPTAERKRKHAAAVKRHYKRIRSQQLPPRLY"
FT   misc_feature    complement(259274..259435)
FT                   /note="HMMPfam hit to PF01165, Ribosomal protein S21, score
FT                   1.3e-28"
FT   misc_feature    complement(259364..259402)
FT                   /note="PS01181 Ribosomal protein S21 signature."
FT   CDS             complement(259718..260347)
FT                   /transl_table=11
FT                   /locus_tag="BPP2843"
FT                   /product="putative transferase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2187"
FT                   /db_xref="GOA:Q7W6Q8"
FT                   /db_xref="InterPro:IPR002375"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6Q8"
FT                   /protein_id="CAE38135.1"
FT                   /translation="MARPRLLFARPPRVVPQAALSFSFAGRYPPMSSPSSDDSHLWVTW
FT                   DDYHRLIERLALQVYQSGWQFDQILCLARGGVRVGDVMSRIFDVPLGILATSSYREAAG
FT                   TKQGDLDIAQFITITRGTLSGRVLLVDDMVDTGHTFNKVHTHLSEQFPAISELRSAVLW
FT                   WKGHSQATPDYFVDKLPTNPWIYQPFEDYDSLRPHQLEAWIRKGYK"
FT   misc_feature    complement(259799..260248)
FT                   /note="HMMPfam hit to PF00156, Phosphoribosyl transferase
FT                   domain, score 0.00049"
FT   misc_feature    complement(259931..259969)
FT                   /note="PS00103 Purine/pyrimidine phosphoribosyl
FT                   transferases signature."
FT   CDS             complement(260371..261678)
FT                   /transl_table=11
FT                   /gene="purA"
FT                   /gene_synonym="adeK"
FT                   /locus_tag="BPP2844"
FT                   /product="adenylosuccinate synthetase"
FT                   /EC_number="6.3.4.4"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2188"
FT                   /db_xref="GOA:Q7W6Q7"
FT                   /db_xref="InterPro:IPR001114"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W6Q7"
FT                   /protein_id="CAE38136.1"
FT                   /translation="MIRKMSKNVVVIGTQWGDEGKGKIVDWLAESVQGVVRFQGGHNAG
FT                   HTLWINGKKTILRLIPSGIMHDGVTCFIGNGVVLSPEALLREIEELEAAGLDVRSRLQV
FT                   SEICTLILPYHVAVDKAREARKGEGKIGTTGRGIGPAYEDKVARRALRVQDLFNPALFD
FT                   EKLAEVLDYHNFVLTQYLGAEPVSANEVRDQAMALAPALAPMVRDVSSNLFVLQQEGKN
FT                   LLFEGAQGALLDVDHGTYPFVTSSNCVAGAASAGAGVGPQALQYVLGITKAYTTRVGSG
FT                   PFPTELVDEIGTRLATIGKEFGSVTGRPRRCGWFDGAALKRSVRLNGISGLCITKLDVL
FT                   DGLETIQLGVGYRVNGEFRDVLPYGAHAVAQAQAVLEELPGWTESTVGITEYSKLPVNA
FT                   RRYLERVAEVCGVPIDLVSTGPDRNETIVLRHPFKG"
FT   misc_feature    complement(260395..261660)
FT                   /note="HMMPfam hit to PF00709, Adenylosuccinate synthetase,
FT                   score 9.5e-256"
FT   misc_feature    complement(261235..261270)
FT                   /note="PS00513 Adenylosuccinate synthetase active site."
FT   misc_feature    complement(261613..261636)
FT                   /note="PS01266 Adenylosuccinate synthetase GTP-binding
FT                   site."
FT   CDS             complement(261743..262900)
FT                   /transl_table=11
FT                   /locus_tag="BPP2845"
FT                   /product="putative tRNA synthetase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2189"
FT                   /db_xref="GOA:Q7W6Q6"
FT                   /db_xref="InterPro:IPR004516"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W6Q6"
FT                   /protein_id="CAE38137.1"
FT                   /translation="MGNWLLPEGLADVLPAEARRIEELRRELLDLYRTYGFELVAPPLV
FT                   EYIDSLLSSTGSDLNLRTCKLVDQLSGRTLGVRADMTSQVTRIDAHLLNRAGVTRLCYC
FT                   GSVLHARPADLLSSRELLQIGAEIYGHAGFEADLEIIQLVMDTLATAGVRNARLDLCHS
FT                   GVMRAIFDADPQASRHAGDLCTLLREKDVPGLAELASRVDGLGEDTVRALQALATLYGG
FT                   PEIIARARRELPAVPGMAQALDALQALVDAMPGVTLSVDLADVGGYGYHSGVTFAVYGE
FT                   DWHDALVRGGRYDDVSRAFGRARPATGFSLDLRKLAAGLTPAEPARAVRAPWGQDPALT
FT                   DAVRRLRRSGEIVVQVLPGHEQGLDEFVCDRELALQDGAWTVRTL"
FT   CDS             complement(263084..263983)
FT                   /transl_table=11
FT                   /gene="hflC"
FT                   /locus_tag="BPP2846"
FT                   /product="putative inner membrane-anchored protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2190"
FT                   /db_xref="GOA:Q7W6Q5"
FT                   /db_xref="InterPro:IPR010200"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6Q5"
FT                   /protein_id="CAE38138.1"
FT                   /translation="MQRLMPILVGLLVVLAVLSSCVFVVRERDYALVFSLGEVRQVISE
FT                   PGLYFKAPPPFQNVVTLDKRILTIESSDAERIQTSEKKNLLIDSYVKWRIADPRLYYVT
FT                   FGGNERAAQERLQAQIRDALNAAVNVRTVKDVVSAERDKVMAEILTNVAKRAEPLGVQV
FT                   VDVRLRRIEFAPEISESVYRRMEAERTRVANELRSIGAAESEKIRAEADRQREVIVAQA
FT                   YARAQGIMGEGDAQAGSIYAQAFGRNTEFYTYYKSLEAYRAAFGKTGDVLVVDPTSEFF
FT                   QFFKNPGKGAAGAPAPAN"
FT   misc_feature    complement(263378..263923)
FT                   /note="HMMPfam hit to PF01145, SPFH domain / Band 7 family,
FT                   score 2.4e-33"
FT   misc_feature    complement(263906..263962)
FT                   /note="1 probable transmembrane helix predicted for BPP2846
FT                   by TMHMM2.0 at aa 7-26"
FT   misc_feature    complement(263912..263983)
FT                   /note="Signal peptide predicted for BPP2846 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.934) with cleavage site
FT                   probability 0.520 between residues 24 and 25"
FT   misc_feature    complement(263921..263953)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(264002..265306)
FT                   /transl_table=11
FT                   /gene="hflK"
FT                   /locus_tag="BPP2847"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2191"
FT                   /db_xref="GOA:Q7W6Q4"
FT                   /db_xref="InterPro:IPR010201"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6Q4"
FT                   /protein_id="CAE38139.1"
FT                   /translation="MSRITKLFNLNDPGWGRGNNNGNGSEPPRRPQGGGDGPPDLDEVW
FT                   RDFNNRIGALFGRKGGGGNNRPNNRGGMTPPSPRGARIGLGIIALVLVLLWLASGFFIV
FT                   QEGQVAVVTQFGKYKSTAPAGFQWRMPYPIQNHEMVNVSQLRTFEVGFRGGSRNKVLPE
FT                   ALMLTTDENIVDMQFVVQYRLRADGAPDYLFKMRDPDESVRQAAETAMREIVGKKPMDF
FT                   VLYEGRTEVAAEVQNLMQQILDRYSAGIQISTVAIQNVQPPEQVQAAFDDAVKAGQDRE
FT                   RQINEGQAYANQVVPLASGQASRMIEQAEGYKAKVIGDAQGNASRFSSILNEYEKAPQV
FT                   MRERLYLETMQEVFTRASKVMVDTKGGNNMLYLPLDKIMQQAAQDAGKPTSSSLGLPGA
FT                   NQPAIPQAPARGSASGQSSSGSSTSNTLPRDRMSR"
FT   misc_feature    complement(264434..265009)
FT                   /note="HMMPfam hit to PF01145, SPFH domain / Band 7 family,
FT                   score 7.8e-33"
FT   misc_feature    complement(264992..265057)
FT                   /note="1 probable transmembrane helix predicted for BPP2847
FT                   by TMHMM2.0 at aa 83-105"
FT   CDS             complement(265272..266309)
FT                   /transl_table=11
FT                   /gene="hflX"
FT                   /locus_tag="BPP2848"
FT                   /product="putative GTP-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2192"
FT                   /db_xref="GOA:Q7W6Q3"
FT                   /db_xref="InterPro:IPR016496"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W6Q3"
FT                   /protein_id="CAE38140.1"
FT                   /translation="MLAKGAGAEIVGTLTARRDRPDAKFFIGSGKVEEGVAMAGALLAD
FT                   IILFDQPLSPAQQRNLEREFNLRVVDRVALILDIFALRAKSHEGKLQVELAQLQHLATR
FT                   LTRMWSHLERQRGGIGMRGPGEAQLEMDRRMIGAKVKVLRERLDRVERQRVTQRRARAR
FT                   GGALSVSLVGYTNAGKSTLFNAMTRAGAYAADQLFATLDTTTRRIWIDGAGSVVLSDTV
FT                   GFIRDLPHNLIAAFRATLEETVHADLLLHVVDAASAQRDEQIAEVDKVLAEIGAAQIPT
FT                   ILVYNKIDRAGLEPRVDRDAHGTIARVFVSATERAGLDALRGAIAEIGQIVGNNVSNHQ
FT                   TLQSE"
FT   misc_feature    complement(265770..265793)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             complement(266466..266702)
FT                   /transl_table=11
FT                   /gene="hfq"
FT                   /locus_tag="BPP2849"
FT                   /product="putative RNA-binding regulatory protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2193"
FT                   /db_xref="GOA:Q7W6Q2"
FT                   /db_xref="HSSP:1HK9"
FT                   /db_xref="InterPro:IPR001163"
FT                   /db_xref="