EBI Dbfetch

ID   BX640428; SV 1; linear; genomic DNA; STD; PRO; 348525 BP.
XX
AC   BX640428;
XX
DT   09-AUG-2003 (Rel. 76, Created)
DT   23-OCT-2008 (Rel. 97, Last updated, Version 6)
XX
DE   Bordetella parapertussis strain 12822, complete genome; segment 6/14
XX
KW   complete genome.
XX
OS   Bordetella parapertussis
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Alcaligenaceae; Bordetella.
XX
RN   [2]
RP   1-348525
RA   Sebaihia M.;
RT   ;
RL   Submitted (06-AUG-2003) to the EMBL/GenBank/DDBJ databases.
RL   Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute,
RL   Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail:
RL   ms5@sanger.ac.uk
XX
RN   [3]
RA   Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E.,
RA   Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L.,
RA   Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A.,
RA   Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I.,
RA   Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T.,
RA   Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S.,
RA   Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E.,
RA   Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M.,
RA   Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S.,
RA   Barrell B.G., Maskell D.J.;
RT   "Comparative analysis of the genome sequences of Bordetella pertussis,
RT   Bordetella parapertussis and Bordetella bronchiseptica";
RL   Nat. Genet. 35(1):0-0(2003).
XX
DR   EMBL-CON; BX470249.
DR   RFAM; RF01118; PK-G12rRNA.
DR   SILVA-LSU; BX640428.
DR   SILVA-SSU; BX640428.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..348525
FT                   /organism="Bordetella parapertussis"
FT                   /strain="12822"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:519"
FT   CDS             159..611
FT                   /transl_table=11
FT                   /locus_tag="BPP1633"
FT                   /product="putative lipoprotein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0907"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0907"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9W6"
FT                   /protein_id="CAE36934.1"
FT                   /translation="MRIARIAAVAGVVGLAGCSVGTAPGAGAVSGNYKLQTNYQDAYRY
FT                   ATVQAERCLVGQGGYRVVGELDDNARTGLVRVVAPFFDGEMARVEIGAIDAHSSNVYIG
FT                   MWGKSIWNTDALRAMREAVVYGVPSCVAYMPGDPAPTEEVWRLPNR"
FT   misc_feature    180..212
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(614..1123)
FT                   /transl_table=11
FT                   /locus_tag="BPP1634"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0908"
FT                   /db_xref="InterPro:IPR006683"
FT                   /db_xref="PDB:3DKZ"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9W5"
FT                   /protein_id="CAE36935.1"
FT                   /translation="MTEKRRRLPRPEKAILWPASYLHHRSVTQQLPIMSTPHTDFFGLT
FT                   IPFMQLLGVVPEHSGNGTARTRLPARADLVNSRGDIHGGTLMSVLDFTLGAAIRGDTPE
FT                   VGVATIDMNTSFMSPGRGDLVIETRCLRRGASIAFCEGEIRDSAGELVAKATATFKIIQ
FT                   RRPGGD"
FT   misc_feature    complement(638..1000)
FT                   /note="HMMPfam hit to PF02584, Uncharacterized protein
FT                   PaaI, COG2050, score 9.2e-05"
FT   CDS             1122..2207
FT                   /transl_table=11
FT                   /gene="dinP"
FT                   /locus_tag="BPP1635"
FT                   /product="DNA-damage-inducible protein p"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0909"
FT                   /db_xref="GOA:Q7W9W4"
FT                   /db_xref="HSSP:1IM4"
FT                   /db_xref="InterPro:IPR017963"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9W4"
FT                   /protein_id="CAE36936.1"
FT                   /translation="MSQLQRKIVHIDMDAFYASVEQRDNPALRGLPVVVAWTGPRSVVC
FT                   AASYEARRYGVHSAMAAARAQRLCPDAVYVPPDFNRYREVSRQVRAIFARHTDLIEPLS
FT                   LDEAYLDVTCNKLGLASATEVAQIIRRQIREETGLTASAGVAPNKFLAKIASDWNKPDG
FT                   LFVIKPSRVLDFLQPLPVRKVPGVGKVMQARLEQLGIQTVGDLSRHSVAELEQRFGRYG
FT                   VRLYELARGIDERAVQADQPAQQVSAETTFDTDLALEALGEALERLAAKVWEQGAKKGR
FT                   IGRTTVLKLKTDRFRILTRSLTLMQPPGSAAELAAIARQLCTRVDLPAHTRYRLVGVGM
FT                   SNFPDAQAEAPRQAELFGDAF"
FT   misc_feature    1152..2156
FT                   /note="HMMPfam hit to PF00817, impB/mucB/samB family, score
FT                   2.6e-112"
FT   CDS             complement(2231..2695)
FT                   /transl_table=11
FT                   /locus_tag="BPP1636"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2213"
FT                   /db_xref="GOA:Q7W9W3"
FT                   /db_xref="InterPro:IPR019004"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9W3"
FT                   /protein_id="CAE36937.1"
FT                   /translation="MSHDTLKARLSDSVKDAMRAKATDRLATLRFLLAAIKQREVDERR
FT                   ELSDAEITAVIEKQVKQRRESIAAFEQAGRTETAEHEKAELAVLQEFLPQAAAPEEVAA
FT                   AVDAALAEVSTQGVTGAPAMGKVMAILKQKLAGRADMAALSQQVKARLLP"
FT   misc_feature    complement(2240..2671)
FT                   /note="HMMPfam hit to PF02637, GatB/Yqey domain, score
FT                   3.1e-16"
FT   CDS             2842..4050
FT                   /transl_table=11
FT                   /gene="fhp"
FT                   /locus_tag="BPP1637"
FT                   /product="flavohemoprotein"
FT                   /product="putative flavohemoprotein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2212"
FT                   /db_xref="GOA:Q7TTP2"
FT                   /db_xref="InterPro:IPR001221"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7TTP2"
FT                   /protein_id="CAE36938.1"
FT                   /translation="MLSPEVRALVKATAPVLKEHGEALTRHFYTRMLGGNPELRQLFNQ
FT                   GHQQSGQQQQALAAAVAAYAEHIDDPSVLLPVVERIAHKHVSLGVRAEHYAIVGKHLLA
FT                   SIREVLGEAATDELIDAWAAAYGQLADLLIGRERALYAAAASRDGGWTGWRAFKVVRKT
FT                   PESAEITSFYLAPADGGATPDYLPGQYVSVRVYVPELGLMQPRQYSLSEAPGMPGQLRI
FT                   SVKREAGSPAGMVSGTLHNRINEGDVLDVSPPQGDFTLDAEDGRPVVLLSGGVGLTPMV
FT                   SMLNHLTARDDGRQIRFVHACREAGVHAMKEHINALAAKRPNVRKAVFYERVGADDRRG
FT                   VDYDYEGRVDLHAIRDEVILPDADYYLCGPLPFMQAQRRALADLGVAEHRIHAEVFGTG
FT                   GVA"
FT   misc_feature    2842..3255
FT                   /note="HMMPfam hit to PF00042, Globin, score 6.8e-19"
FT   misc_feature    3307..3621
FT                   /note="HMMPfam hit to PF00970, Oxidoreductase FAD-binding
FT                   domain, score 4.8e-05"
FT   misc_feature    3634..3984
FT                   /note="HMMPfam hit to PF00175, Oxidoreductase NAD-binding
FT                   domain, score 7.8e-20"
FT   CDS             4061..4531
FT                   /transl_table=11
FT                   /locus_tag="BPP1638"
FT                   /product="putative conserved DNA-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2211"
FT                   /db_xref="GOA:Q7W9W2"
FT                   /db_xref="InterPro:IPR000944"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9W2"
FT                   /protein_id="CAE36939.1"
FT                   /translation="MPRSAAHPAPAMQLNRFTDFGLRVMMYLTQCRDRTVPVTIPEIAA
FT                   RFEISRNHLVKVVHFLSQQGWIVATRGKGGGLRLARDAVEYRIGELVRVLEDQGALVNC
FT                   AQPPCVLNGACRLSGALAESLQAFYRTLDGYTLDDLVRAPTALAIVRLHRAA"
FT   misc_feature    4094..4456
FT                   /note="HMMPfam hit to PF02082, Uncharacterized protein
FT                   family UPF0074, score 1.7e-29"
FT   CDS             join(4650..4859,4862..5938)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP1639"
FT                   /product="putative amino acid dehydrogenase subunit
FT                   (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2210"
FT                   /db_xref="PSEUDO:CAE36940.1"
FT   misc_feature    join(4650..4859,4862..5866)
FT                   /note="HMMPfam hit to PF01266, FAD dependent
FT                   oxidoreductase, score 0.00018"
FT   variation       4860..4861
FT                   /note="AG in parapertussis; AG(C) in pertussis"
FT   CDS             complement(6004..9162)
FT                   /transl_table=11
FT                   /locus_tag="BPP1640"
FT                   /product="putative DNA polymerase III alpha chain"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2208"
FT                   /db_xref="GOA:Q7W9W1"
FT                   /db_xref="InterPro:IPR004805"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9W1"
FT                   /protein_id="CAE36941.1"
FT                   /translation="MSAILPGYAELHCQSNFSFLQGASHPEELVTRAGELGYAALALTD
FT                   ECSLAGVVRAHVEAREQKLPLIIGSSFTLQAGADAPPLDLTLLAQNREGYGNLAELITL
FT                   GRGRAAKGQYLLTPADIEAPAGDNAHLRGMPDCLAILAPPPGLAAERLAEQARWLAAQC
FT                   PGRAWIGLTLLHHCRDDLHRAAVEHAAHASGLPIVALGQAQMHRRSRKPLHDTLAAIRT
FT                   GRSVGQCGYDLAANAERHLRSRLRLASLYPAQALAQTLAIARRCTFSLDELQYEYPDEI
FT                   VPAGHTPASYLRQQTYLGARQRFPEGMTPAVAAQVEKELALINELRYEAYFLTVYDIVG
FT                   YARSQGILCQGRGSAANSAVCYCLGITAVDPARGNTLFERFISKERNEPPDIDVDFEHQ
FT                   RREEVIQYIYEKYGRQRAALTAVVISYRPRSVLRDTGRALGVDNGIIDAVARAHQWWDG
FT                   KKEMLRSLAACGLDPASRVARQWAELAETLMGFPRHLSQHPGGFVISRGKLSRLVPIEN
FT                   AAMPGRSVVQWDKDDLDALRLLKVDVLALGMLSVLRRALALAGQRRGRPLALHEIPPDD
FT                   DATYDMICAADTIGVFQIESRAQMSMLPRLRPRQYYDLVVQVAIVRPGPIQGGMVPPYL
FT                   RRRQGREDITYPGPAVRKALARTLGVPIFQEQVMQIAVDAAGFTPGEADALRRSMAAWR
FT                   RKGGVDKFRAQLVGGLLARNYTADFAQALFRQIEGFGEYGFPESHAASFALLAYASSWL
FT                   KCHEPEAFLAALLNSQPMGFYAPAQLVQDARRHGVRVLPADVLYSGWEASLQDAPGAAR
FT                   PAVRLGLNLVKGLREDSARAIEQARVRRPFADTADMARRAGLPRQALDALAAADALRTL
FT                   AGHRRLASWQAAASAQSRDLLREAVIVETETPALPAPSEGQTVAADYRSVGLTLGRHPL
FT                   ALLRPQLAARNFQTAAVLNTYPNRRLARACGIVTVRQRPQTAKGTIFVTLEDETGPINA
FT                   VVRPELIERQRRELLDATLLGIYGTWQSVDGVRHLVAQRLVDLSSLLGQLSQDGLAAAS
FT                   RNFH"
FT   misc_feature    complement(6067..6294)
FT                   /note="HMMPfam hit to PF01336, OB-fold nucleic acid binding
FT                   domain, score 0.0071"
FT   misc_feature    complement(7453..7500)
FT                   /note="PS01323 Phosphotriesterase family signature 2."
FT   misc_feature    complement(8941..9138)
FT                   /note="HMMPfam hit to PF02231, PHP domain N-terminal
FT                   region, score 3.1e-14"
FT   CDS             complement(9171..10556)
FT                   /transl_table=11
FT                   /locus_tag="BPP1641"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Ralstonia solanacearum hypothetical
FT                   protein Rsp0799 or Rs01908 SWALL:Q8XRN2 (EMBL:AL646080)
FT                   (523 aa) fasta scores: E(): 4.8e-37, 45.08% id in 488 aa,
FT                   and to Rhizobium meliloti hypothetical protein Ra0488 or
FT                   Sma0890 SWALL:Q92ZJ7 (EMBL:AE007239) (474 aa) fasta scores:
FT                   E(): 2.6e-22, 30.2% id in 480 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9W0"
FT                   /protein_id="CAE36942.1"
FT                   /translation="MLERECVGACSPAARLAGIRPGMRRAGALAIAPQAVLLERSPAAE
FT                   AQARQDAALALLQYTPQVALAKDGVLLDVGASLQVFGGPRALHRRIAATLRTLGLDASL
FT                   GMAPHAAGAWLLARDPARGAPRRVLRDATLARRLDRLPPALLPQAQARLDWLHDIGCQT
FT                   LGQLRALPRGGLQRRGGVELLRALDAAYGQAAQAHAWVQPPASFTRRIELTDYVEHAPA
FT                   LLHVAQRLCEQLGGWLAAHQRAVERIVLRLDHERGRHACAPTELTLALAQPAWQAHHLL
FT                   GLLRERLGRLVLPAPAIAVGLHAPDTVPQPAASTCLFPEPGGTPADHARLLDLLGARLG
FT                   RERVRRARPAADHRPEQANRWQAAHDPPPADPAADQPERLERPFWLLSPALPLSIQQHR
FT                   PTYNGQALRLVRGPERIESGWWDAALTVRDYFVAEDAAGARYWLYRERDARQARWFLHG
FT                   LFA"
FT   CDS             complement(10573..11280)
FT                   /transl_table=11
FT                   /locus_tag="BPP1642"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Ralstonia solanacearum hypothetical
FT                   protein Rsp0798 or Rs01909 SWALL:Q8XRN3 (EMBL:AL646080)
FT                   (272 aa) fasta scores: E(): 9.8e-35, 51.58% id in 221 aa,
FT                   and to Pseudomonas aeruginosa hypothetical protein Pa0671
FT                   SWALL:Q9I5Q0 (EMBL:AE004502) (183 aa) fasta scores: E():
FT                   9.7e-23, 49.43% id in 176 aa"
FT                   /db_xref="InterPro:IPR017166"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9V9"
FT                   /protein_id="CAE36943.1"
FT                   /translation="MLAPERIHPALWRATQLAHGPTRKLPTGYADLSAQLPGGGWPLGA
FT                   LVELLLPQPGSGEIRLLRPALAQLEARRAIALVQPPHAPHIASWASWRLDPRQLLWVAP
FT                   ERPADALWAAEQILKAGSCAALLCWLPQVRPESLRRLHLAAQGGDALFVALRPAAAERH
FT                   ASPAVLRLALAPAPGGLSIRIVKRRGPACEHPVHVGLEAGAGLSVFPAPHAPLDRRLPA
FT                   QPVAGRRTPALVS"
FT   CDS             11391..12095
FT                   /transl_table=11
FT                   /locus_tag="BPP1643"
FT                   /product="probable esterase"
FT                   /note="Similar to Spirulina platensis serine esterase
FT                   SWALL:Q53415 (EMBL:S70419) (207 aa) fasta scores: E():
FT                   8e-09, 31.34% id in 201 aa, and to Escherichia coli O157:H7
FT                   hypothetical protein YphF or Z3732 or Ecs3335 SWALL:Q8XBD7
FT                   (EMBL:AE005477) (240 aa) fasta scores: E(): 5e-31, 44.59%
FT                   id in 222 aa"
FT                   /db_xref="GOA:Q7W9V8"
FT                   /db_xref="InterPro:IPR003140"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9V8"
FT                   /protein_id="CAE36944.1"
FT                   /translation="MVSSASIEILPNPDIPVRQLFILLHGAGGAPDDMAALARALRAAF
FT                   PASAVMIPEGFEPCDGGPRGRQWFALQGITDENRPERVARAMPALFDYVRAAQQRLGLL
FT                   QSDTALAGFSQGAIMALEAVIAHDGLAGRVLAFSGRYAQLPRSAPQYTTIHLLHGAADA
FT                   VMSVAHAQAAQERLDALHGDSTIDVATQVGHQLHPALIQRTIVRLQTCVPLRSWEEALG
FT                   LKQAPPDGSTLH"
FT   misc_feature    11403..12026
FT                   /note="HMMPfam hit to PF02230,
FT                   Phospholipase/Carboxylesterase, score 7e-28"
FT   CDS             complement(12102..13523)
FT                   /transl_table=11
FT                   /locus_tag="BPP1644"
FT                   /product="probable outer membrane efflux protein"
FT                   /note="Similar to Pseudomonas aeruginosa OprN protein
FT                   SWALL:P95423 (EMBL:X99514) (472 aa) fasta scores: E():
FT                   5.8e-41, 38.02% id in 476 aa, and to Ralstonia solanacearum
FT                   probable outer membrane channel lipoprotein Rsc0166 or
FT                   Rs01036 SWALL:Q8Y315 (EMBL:AL646057) (480 aa) fasta scores:
FT                   E(): 2.7e-33, 34.29% id in 487 aa"
FT                   /db_xref="GOA:Q7W9V7"
FT                   /db_xref="InterPro:IPR010131"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9V7"
FT                   /protein_id="CAE36945.1"
FT                   /translation="MSIRSLLPLIPALALAGCAAVGPDYRLPEQAAAKRPAAAAPFVQA
FT                   REQAVYRQDELPPHWWRLYQDRQLDSLVEQALAANADLRVAAANLERAQAVTRQAQARQ
FT                   QPTVDVSAAPAFGHASGVQELQPGLRPQDSWSYSGGLGVSYQLDLFGQIRRAIEAAQDD
FT                   AQAAQAAYDAARVTVAAETARAYADLCAAGMQLDSARHSVQVQQQSVDAVQRLLAAGRG
FT                   TTLDVARARSQLEQLQAELPPFQAGQRTALYRLAALTGHAPAELPQSLLACVRPPRLAQ
FT                   AIPVGDGAALLRRRPDIRQAERSLAAATARIGVATADLYPKISLGLSGASAGPAALFGE
FT                   PGTFSWSVGPLISWTLPDTGAAQARIAQAEASTKGALARFDATVLNALRETESALVTYA
FT                   RQLDRDAALRAAREQGAQAAAQARQLFRLGKTDYLTVLDAERTLAGNESALAASQAQLA
FT                   GDQIAVFLALGGGWE"
FT   misc_feature    complement(12111..12674)
FT                   /note="HMMPfam hit to PF02321, Outer membrane efflux
FT                   protein, score 9.1e-29"
FT   misc_feature    complement(12711..13319)
FT                   /note="HMMPfam hit to PF02321, Outer membrane efflux
FT                   protein, score 2e-34"
FT   misc_feature    complement(13467..13523)
FT                   /note="Signal peptide predicted for BPP1644 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.996) with cleavage site
FT                   probability 0.426 between residues 19 and 20"
FT   misc_feature    complement(13470..13502)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(13551..14444)
FT                   /transl_table=11
FT                   /locus_tag="BPP1645"
FT                   /product="putative HlyD family secretion protein"
FT                   /note="Similar to Brucella melitensis fusaric acid
FT                   resistance protein FusE Bmeii0533 SWALL:Q8YCJ5
FT                   (EMBL:AE009689) (285 aa) fasta scores: E(): 2.3e-45, 51.43%
FT                   id in 278 aa, and to Agrobacterium tumefaciens HlyD family
FT                   secretion protein Atu5539 or Agr_pat_806 SWALL:AAL46225
FT                   (EMBL:AE008974) (291 aa) fasta scores: E(): 4.1e-40, 47.16%
FT                   id in 282 aa"
FT                   /db_xref="GOA:Q7W9V6"
FT                   /db_xref="InterPro:IPR006143"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9V6"
FT                   /protein_id="CAE36946.1"
FT                   /translation="MKFPQSLRAAALGKFAVTAAVVAAAVYAGWQLWAHYELEPWTRDG
FT                   RVKAYVVQVAPDVSGLVTAVPVRDNQDVQAGDVLFEIDRARFQLACDQAQAALRAQQVA
FT                   HEQALRDVKRNRALGQLVAAEALEQSQARLQQIEAARAQAEVQLDTARLNLARSRVVAG
FT                   VAGRITNLDLRAGSYASAGKPVMALVDAGSFYVEGYFEETKLARIHEGDGVTVTLMGDS
FT                   RAIHGHVESIALGIADRDRSTGANLLPNVNPTFNWVRLAQRIPVRVRIDQVPAGVRLVA
FT                   GQTATVAIDQAGPRPS"
FT   misc_feature    complement(13584..14297)
FT                   /note="HMMPfam hit to PF00529, HlyD family secretion
FT                   protein, score 2.6e-14"
FT   misc_feature    complement(14343..14408)
FT                   /note="1 probable transmembrane helix predicted for BPP1645
FT                   by TMHMM2.0 at aa 12-34"
FT   misc_feature    complement(14361..14444)
FT                   /note="Signal peptide predicted for BPP1645 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.995) with cleavage site
FT                   probability 0.411 between residues 28 and 29"
FT   CDS             complement(14449..14661)
FT                   /transl_table=11
FT                   /locus_tag="BPP1646"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Salmonella typhimurium and Salmonella
FT                   typhi putative inner membrane protein YhcR or Stm3366 or
FT                   Sty3546A SWALL:Q8XEK3 (EMBL:AE008855) (67 aa) fasta scores:
FT                   E(): 1.8e-05, 42.3% id in 52 aa, and to Agrobacterium
FT                   tumefaciens hypothetical protein Atu5540 SWALL:AAL46226
FT                   (EMBL:AE008974) (69 aa) fasta scores: E(): 4e-07, 41.27% id
FT                   in 63 aa"
FT                   /db_xref="InterPro:IPR012451"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9V5"
FT                   /protein_id="CAE36947.1"
FT                   /translation="MIGEFNLYGVYFPWLLVLGVLTLGVAWIARRALARIGFYRLVWHP
FT                   ALFDLALFIVLLYGASLISPHIFQR"
FT   misc_feature    complement(join(14473..14538,14575..14631))
FT                   /note="2 probable transmembrane helices predicted for
FT                   BPP1646 by TMHMM2.0 at aa 10-29 and 41-63"
FT   CDS             complement(join(14658..16559,16563..16703))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP1647"
FT                   /product="putative membrane protein (Pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2665"
FT                   /db_xref="PSEUDO:CAE36948.1"
FT   misc_feature    complement(join(15162..15227,15333..15389,15411..15476,
FT                   15561..15626,16236..16301,16332..16382,16404..16469,
FT                   16611..16676))
FT                   /note="8 probable transmembrane helices predicted for
FT                   BPP1647 by TMHMM2.0 at aa 9-31, 78-100, 107-124, 134-156,
FT                   359-381, 409-431, 438-457 and 492-514"
FT   variation       complement(16560..16562)
FT                   /note="In-frame TAG stop codon in parapertussis; TGG in
FT                   pertussis"
FT   CDS             complement(16700..17173)
FT                   /transl_table=11
FT                   /locus_tag="BPP1648"
FT                   /product="putative MarR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2664"
FT                   /db_xref="GOA:Q7W9V4"
FT                   /db_xref="InterPro:IPR000835"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9V4"
FT                   /protein_id="CAE36949.1"
FT                   /translation="MKTATDNRLMAMTANLMVLSRAYRSAADKALADFGLSQATAWPVI
FT                   LTGRLGDGVRQGALAEALGVEGPSLVRVLDQLVAAGLIERREDPQDRRARTLHLTPAGQ
FT                   SLREQVENVLVQLRRQLFQGIADADLETCLRVFDSLKSALGRESAAAREDYRP"
FT   misc_feature    complement(16754..17068)
FT                   /note="HMMPfam hit to PF01047, MarR family, score 2e-13"
FT   misc_feature    complement(16865..16969)
FT                   /note="PS01117 Bacterial regulatory proteins, marR family
FT                   signature."
FT   misc_feature    complement(17096..17173)
FT                   /note="Signal peptide predicted for BPP1648 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.926) with cleavage site
FT                   probability 0.898 between residues 26 and 27"
FT   CDS             complement(17337..17957)
FT                   /transl_table=11
FT                   /locus_tag="BPP1649"
FT                   /product="putative transcriptional regulatory protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2663"
FT                   /db_xref="GOA:Q7W9V3"
FT                   /db_xref="HSSP:1B0N"
FT                   /db_xref="InterPro:IPR014710"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9V3"
FT                   /protein_id="CAE36950.1"
FT                   /translation="MASCVLTHSPPPPMTAKSPPIPAPSPEQIGLRIRALRKRQKRTLA
FT                   WLSAQCGLDKGFLSRLERGEKSASVGTLHTVAGALGSSLSALLGEADPQTEIQIVRAAD
FT                   RHRMTTAPGPGEHIYEAITLGSSHSGLSVMVVEVGTHGAHTEAHHGGDELIFVLDGRIR
FT                   VHFGGHTVLLERDDSVRFPGYLPHSLSAEGRKLARALVVIASG"
FT   misc_feature    complement(17697..17861)
FT                   /note="HMMPfam hit to PF01381, Helix-turn-helix, score
FT                   6e-07"
FT   CDS             18102..18893
FT                   /transl_table=11
FT                   /locus_tag="BPP1650"
FT                   /product="putative aldolase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2662"
FT                   /db_xref="GOA:Q7W9V2"
FT                   /db_xref="InterPro:IPR001303"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9V2"
FT                   /protein_id="CAE36951.1"
FT                   /translation="MMSSSYTVQDKDVLRARVDREIESRVSEPQWTRAQKMALACRMLA
FT                   EQGHWHGGLAGQITARGDEPGTYWTLPFGVGADEARASELILIDEDLNPLDGKSLPNPA
FT                   NRFHIWIYRHRPNVQCIVHTHPPAVSALSMVGEPLVVAHMDATPFYNDCAYLPQWPGLP
FT                   IGDNEGEVISAALGEKRAILLANHGLLTAGSSIEESAVMALWMEQAAMLQLRARAIGPV
FT                   KAVPGELAQESHDFLVKPKIQSLTFAYFARRVLRAAPDCLD"
FT   misc_feature    18201..18824
FT                   /note="HMMPfam hit to PF00596, Class II Aldolase and
FT                   Adducin N-terminal domain, score 1.6e-13"
FT   CDS             18948..20039
FT                   /transl_table=11
FT                   /locus_tag="BPP1651"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2661"
FT                   /db_xref="GOA:Q7W9V1"
FT                   /db_xref="InterPro:IPR018389"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9V1"
FT                   /protein_id="CAE36952.1"
FT                   /translation="MQRRRFLTAAAAGAGSAVLAAPAVAQEAPTIRWRMPSSFPRSLDT
FT                   VWGAAEAITARVSELTDGKFAIRAFPAGEIVPPLQVLDAVQNGTTECGHTAGFYYMGKE
FT                   PALVFDTGVPFGLTPRQHSAWVLQGGGQALIDELYAGFNAIAIPCGNTGAQMGGWFRKQ
FT                   MRTPDDFKGLRIRTPGLLSMVYQKLGAIPQQIAGSDIYPALEKGSLDAVEFVGPYDDEK
FT                   LGFAKVAQYYYGPGVMELGANLCLNVNRESWQSLPPRYQVALRAACAMAGEELLAKYDA
FT                   YNIPALKRLVGQGAKLQSWSPEIMAAMQKATREVLEEYAGKNPRFAKVLESWRAFRADQ
FT                   LLWASVNDGVAERYLPATRENGL"
FT   misc_feature    18948..19022
FT                   /note="Signal peptide predicted for BPP1651 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.978 between residues 25 and 26"
FT   misc_feature    19050..19916
FT                   /note="HMMPfam hit to PF03480, Bacterial extracellular
FT                   solute-binding protein, family 7, score 2.2e-60"
FT   CDS             complement(20061..20504)
FT                   /transl_table=11
FT                   /locus_tag="BPP1652"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2660"
FT                   /db_xref="GOA:Q7W9V0"
FT                   /db_xref="InterPro:IPR007115"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9V0"
FT                   /protein_id="CAE36953.1"
FT                   /translation="MISVTRRLEFDAGHRIPDHNSQCRNLHGHRYVLEVTLSGDVVQAP
FT                   GASDNGMLMDFSEIKRIARTHIVDVWDHAFLVYEGDHAVRGFLDTLPDHKTVVLDRIPT
FT                   AENLASIIFATLAPHYHGHYGADLRLTRVRLYETPNCWADCGS"
FT   misc_feature    complement(20082..20504)
FT                   /note="HMMPfam hit to PF01242, 6-pyruvoyl tetrahydropterin
FT                   synthase, score 0.00011"
FT   CDS             complement(20533..21165)
FT                   /transl_table=11
FT                   /locus_tag="BPP1653"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2659"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9U9"
FT                   /protein_id="CAE36954.1"
FT                   /translation="MAYSVKELFKTLQGEGAQAGRAAVFCRFAGCNLWTGRESDRAGAA
FT                   CTFCDTDFVGTDGQGGGKFADAAGLADAIAACWGEHPADRYVVFTGGEPLLQLDEALLQ
FT                   AVHAQGFTVAIETNGTLPPPPGIDWICVSPKGRAPVVVERGHELKLVFPQADARPEAFA
FT                   HLAFEHFFLQPMDGPARAAHTAQAVQYCLDHPQWRLSLQTHKYIGIP"
FT   repeat_region   21220..21232
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS1001 element"
FT   repeat_region   complement(21220..22526)
FT   CDS             complement(21223..22443)
FT                   /transl_table=11
FT                   /locus_tag="BPP1654"
FT                   /product="transposase"
FT                   /note="transposase for IS1001 element"
FT                   /db_xref="GOA:Q7TTN6"
FT                   /db_xref="InterPro:IPR002560"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTN6"
FT                   /protein_id="CAE36955.1"
FT                   /translation="MLDRKLLESLGGWQGYGVERVEWPEDPGRTLSIYLKPTAKVMLCE
FT                   QCGARCRQVHETTVRRVRDLPLFEYRVVLHVPRRRLWCEQCGGPRLERLAWLGRYQRVT
FT                   DRLAQACSQLLQSSNVQAVARFFELGWHTVKTLDKARLRASVREPDWSKIEYLAMDEFA
FT                   LHKGHRYATVVVDPIGRQVLWIGPGRSRETARAFFEQLPPGAAQRIKAVAIDMTTAYEL
FT                   EIQAHSPQAEIVYDLFHVVAKYGREVIDRVRVDQANQLRQDRPARRIIKSSRWLLLRNR
FT                   DNLDRQQAVRLDELLQANQPLLTVYVLRDELKRLWFYQRPAWARQAWNHWYEQAEQSGI
FT                   AALNTFAQRLKGYLHGILARCRHPLNTSIVEGINNTIKVIKRRAYGYRDQEYFFLKIRA
FT                   AFPGNAR"
FT   misc_feature    complement(21364..22353)
FT                   /note="HMMPfam hit to PF01610, Transposase, score 7.9e-128"
FT   repeat_region   complement(22514..22526)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS1001 element"
FT   CDS             22828..23715
FT                   /transl_table=11
FT                   /gene="sbp"
FT                   /locus_tag="BPP1655"
FT                   /product="sulfate-binding protein precursor"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0966"
FT                   /db_xref="GOA:Q7W9U8"
FT                   /db_xref="InterPro:IPR006059"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9U8"
FT                   /protein_id="CAE36956.1"
FT                   /translation="MDEAFIKEYQARAGVDLTVRQSHGGSGRQARSVIDGLDADVVTLA
FT                   LAYDIDAIADRGLLPQDWQKRLPRNSSPYTSTIVFLVRKGNPRQIHDWDDLVKDGVQVI
FT                   TPNPKTSGGARWNYLAAWAYALARNEGSEAKAREFVGQLLSHVPVLDTGARGSTTTFVE
FT                   RGVGDVLLAWENEAFLAREELGPDKFDIVVPSLSILAEPPVAVVDKVVDRKGTRAAAQA
FT                   YLEYLYTPAAQEIIARNFYRPTDETVAARYASRFPKLKLVTIDDPIFGGWRKAQKDHFS
FT                   DGGTFDQVYQPQRK"
FT   misc_feature    22840..23703
FT                   /note="HMMPfam hit to PF01100, Prokaryotic sulphate- and
FT                   thiosulphate-binding protein, score 2.1e-155"
FT   misc_feature    23146..23172
FT                   /note="PS00757 Prokaryotic sulfate-binding proteins
FT                   signature 2."
FT   CDS             23731..24612
FT                   /transl_table=11
FT                   /gene="cysU"
FT                   /gene_synonym="cysT"
FT                   /locus_tag="BPP1656"
FT                   /product="sulfate transport system permease protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0967"
FT                   /db_xref="GOA:Q7W9U7"
FT                   /db_xref="InterPro:IPR005667"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9U7"
FT                   /protein_id="CAE36957.1"
FT                   /translation="MSLAIPSGSAPTAARRQRPGVLPGFGISMGYAVLYLSLLVLVLVP
FT                   LAALPIKSLELGWAGFWDTVTAPRVVASYRLTFGASLLAALVNLVFGTIVAWVLVRYRF
FT                   PGKKLVDALVDLPFALPTAVAGIALTALYSANGWLGAPLQRWFDLKVAFTPLGIVMALI
FT                   FIGVPFVVRTVQPVLEDVERELEEAAASLGAGRWQTIRRVLLPALLPALLTGFALAFAR
FT                   AIGEYGSVVFIAGNMPMISEITPLLIISKLEQYDYAGAAAIATVMLALSFALLLVINLL
FT                   QGWQARRGGRQP"
FT   misc_feature    join(23791..23859,23962..24030,24064..24132,24175..24243,
FT                   24337..24405,24505..24573)
FT                   /note="6 probable transmembrane helices predicted for
FT                   BPP1656 by TMHMM2.0 at aa 21-43, 78-100, 112-134, 149-171,
FT                   203-225 and 259-281"
FT   misc_feature    24259..24489
FT                   /note="HMMPfam hit to PF00528, Binding-protein-dependent
FT                   transport systems inner membrane component, score 1.1e-17"
FT   misc_feature    24262..24348
FT                   /note="PS00402 Binding-protein-dependent transport systems
FT                   inner membrane comp. sign."
FT   CDS             24609..25508
FT                   /transl_table=11
FT                   /gene="cysW"
FT                   /locus_tag="BPP1657"
FT                   /product="sulfate transport system permease protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0968"
FT                   /db_xref="GOA:Q7W9U6"
FT                   /db_xref="InterPro:IPR005667"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9U6"
FT                   /protein_id="CAE36958.1"
FT                   /translation="MSPADHRPAHLTEPRWVRALLLGAALAFLTLFLLVPLAAVFTEAL
FT                   RKGWQLYLAAIVEPDAWSAIRLTLLVAAIALPVNLVFGVAAAWAVTKFQFRGKQLLITL
FT                   IDLPFSVSPVVAGMVFVLLFGSQGWFGSWLQDHDWKIVYAVPGVILATLFVTFPFIARE
FT                   LIPLMQAQGSEEEQAALTLGASGWQIFWRVTLPNIKWGLLYGAILCNARAMGEFGAVSL
FT                   VSGQVRGLTNTMTLHVEILYNEYQFAAAFAVASLLALLALVTLAAKQVVEWRNQRLSPR
FT                   QAEAPVHAGALAVRPAAA"
FT   misc_feature    24609..24722
FT                   /note="Signal peptide predicted for BPP1657 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.785) with cleavage site
FT                   probability 0.569 between residues 38 and 39"
FT   misc_feature    join(24666..24734,24810..24878,24912..24980,25023..25091,
FT                   25206..25274,25341..25409)
FT                   /note="6 probable transmembrane helices predicted for
FT                   BPP1657 by TMHMM2.0 at aa 20-42, 68-90, 102-124, 139-161,
FT                   200-222 and 245-267"
FT   misc_feature    25107..25343
FT                   /note="HMMPfam hit to PF00528, Binding-protein-dependent
FT                   transport systems inner membrane component, score 3.7e-06"
FT   misc_feature    25110..25196
FT                   /note="PS00402 Binding-protein-dependent transport systems
FT                   inner membrane comp. sign."
FT   CDS             25533..26597
FT                   /transl_table=11
FT                   /gene="cysA"
FT                   /locus_tag="BPP1658"
FT                   /product="sulfate transport ATP-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0969"
FT                   /db_xref="GOA:Q7W9U5"
FT                   /db_xref="HSSP:1B0U"
FT                   /db_xref="InterPro:IPR005666"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9U5"
FT                   /protein_id="CAE36959.1"
FT                   /translation="MSIEVRGLSKRFGAFRALDEVSLHIETGELVALLGPSGCGKTTLL
FT                   RIIAGLESADAGSVLFAGEDATEVDVRQRQVGFVFQHYALFKHMTVFENVAFGLRVRHR
FT                   SQRPSEARIRAKVLDLLGLVQLDWLADRYPAQLSGGQRQRIALARALAVEPRVLLLDEP
FT                   FGALDAKVRKELRRWLRRLHDELHVASVFVTHDQEEALEVADRVVLMNAGRIEQVGSPR
FT                   EVWERPATPFVYGFLGDVNQLHGHATRGVWRLGEVALPAPDLPEADNQRAIAYVRPHDI
FT                   DLARAGTAAPGIPVRLNHVYLAGPSAYLELARQDDQAIIEAQVPEPLFRSLGLKEGEAL
FT                   LAQPRRARVFAVQP"
FT   misc_feature    25614..26171
FT                   /note="HMMPfam hit to PF00005, ABC transporter, score
FT                   3e-69"
FT   misc_feature    25635..25658
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    25941..25985
FT                   /note="PS00211 ABC transporters family signature."
FT   CDS             26594..27346
FT                   /transl_table=11
FT                   /gene="cysH"
FT                   /locus_tag="BPP1659"
FT                   /product="phosphoadenosine phosphosulfate reductase"
FT                   /EC_number="1.8.4.8"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0970"
FT                   /db_xref="GOA:Q7W9U4"
FT                   /db_xref="InterPro:IPR014729"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9U4"
FT                   /protein_id="CAE36960.1"
FT                   /translation="MMAARPLAAIAGLTAAAAARWHDLQSRLAIIARQYPDAALASSLA
FT                   AEDMVLTHAIYAGGLDLEVFTLDTGRLHTETLGVLDAVATRYGRAITVYRPDAAAVQAH
FT                   VDAHGMHAFYESVALRKACCEIRKVEPLRRALAGRGAWITGQRRAQSATRGELPDEERD
FT                   PVFGLYKFNPLAAWNEADVWSVIRALGIPYNPLHDQGYPSIGCEPCTRAVRPGEDVRAG
FT                   RWWWESSDSKECGLHAGNRVIQIAARPA"
FT   misc_feature    26594..26644
FT                   /note="Signal peptide predicted for BPP1659 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.951) with cleavage site
FT                   probability 0.426 between residues 17 and 18"
FT   misc_feature    26708..27304
FT                   /note="HMMPfam hit to PF01507, Phosphoadenosine
FT                   phosphosulfate reductase family, score 6.4e-67"
FT   CDS             27396..28304
FT                   /transl_table=11
FT                   /gene="cysD"
FT                   /locus_tag="BPP1660"
FT                   /product="sulfate adenylyltransferase subunit 2"
FT                   /EC_number="2.7.7.4"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0970A"
FT                   /db_xref="GOA:Q7W9U3"
FT                   /db_xref="InterPro:IPR014729"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9U3"
FT                   /protein_id="CAE36961.1"
FT                   /translation="MSAVMTRSHLDWLESEAIFILREVAAECARPALLFSGGKDSVVLL
FT                   RLAEKAFRPGRFPFPLLHIDTGHNYDEVIAFRDARAAELGETLLVRSVEDSIARGSVAL
FT                   RRETDSRNAAQAVTLLEAIEELGLDACIGGARRDEEKARAKERIFSFRDEFGQWDPKAQ
FT                   RPELWNLFNTRVHRGENMRVFPISNWTELDVWQYIQRERLALPSIYYSHAREVVRRKGL
FT                   LVPVTRLTPPAEGETVERLAVRFRTVGDISCTCPVASDAADPAAIIAETAVTDITERGA
FT                   TRMDDQTSEASMERRKREGYF"
FT   misc_feature    27489..28139
FT                   /note="HMMPfam hit to PF01507, Phosphoadenosine
FT                   phosphosulfate reductase family, score 2.4e-50"
FT   CDS             28357..29655
FT                   /transl_table=11
FT                   /gene="cysN"
FT                   /locus_tag="BPP1661"
FT                   /product="sulfate adenylyltransferase subunit 1"
FT                   /EC_number="2.7.7.4"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0971"
FT                   /db_xref="GOA:Q7W9U2"
FT                   /db_xref="InterPro:IPR004161"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9U2"
FT                   /protein_id="CAE36962.1"
FT                   /translation="MNALNDSFLAGADNGVLRLITAGSVDDGKSTLIGRLLYDSKGVFA
FT                   DQLDAISRAKHKRVAGDGIDFSLLTDGLEAEREQGITIDVAYRYFSTPLRKFIIADAPG
FT                   HEQYTRNMVTGASTADAAIILVDATRAADGRLLAQTKRHSAIARLLGIKHIVVAVNKMD
FT                   LVDWDRAVFERIGAAYGELARRLALPAFHILPLSALHGDNVVNLSPHSPWYEGQPLLTL
FT                   LEGLDLAGDGRDLPLRVPVQWVARHGGERADDFRGYAGRVASGVLRPGDEVVVQPSGVR
FT                   ARVQRVLAFDGELQEAVSGDSVTLILDRDVDVSRGDVLVHAQAPARVGREFDAQLCWLD
FT                   AQPLNPARRYLLKHGTRLTSAKISAVHTRRDIHELQEVPNADGALHMNDIGRVSLLTRE
FT                   ALATDPYAAIAATGAFILIDEATHQTAAAGMLE"
FT   misc_feature    28396..29055
FT                   /note="HMMPfam hit to PF00009, Elongation factor Tu GTP
FT                   binding domain, score 8.1e-58"
FT   misc_feature    28423..28446
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    28567..28614
FT                   /note="PS00301 GTP-binding elongation factors signature."
FT   misc_feature    29110..29316
FT                   /note="HMMPfam hit to PF03144, Elongation factor Tu domain
FT                   2, score 3.8e-09"
FT   CDS             29824..31119
FT                   /transl_table=11
FT                   /locus_tag="BPP1662"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0972"
FT                   /db_xref="GOA:Q7W9U1"
FT                   /db_xref="InterPro:IPR007197"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9U1"
FT                   /protein_id="CAE36963.1"
FT                   /translation="MFLCSRFMASTEHSFSAGFGSPAAAPAALRGRGAVTNVSHRFQQA
FT                   DRVRVDDGWANPDYTAGSDAAALPPVADALGQGGRRAIPIAVEGADASPNTCAQAPAPR
FT                   TIVQAEEARKMLSRNDSPDIPFDVAANPYRGCEHGCVYCYARPTHAYLGYSPGLDFETR
FT                   LVAKANAVAALRAELARPGYRASPINIGSATDAYQPIERTWRLTRGMLELLLQTRHPLT
FT                   VVTKNALVECDLDLLQDLARQKLVTVFVSITTLDAAMARTLEPRASAPYRRLQTVRTLA
FT                   QAGVPVGVLVAPVIPFINDESLEHVLQEASAAGACYASYTVLRLPWEVKEVFETWLQAH
FT                   FPDRAQRVLHRIEDLRNGRRNDTAFGSRMRGTGIWADLLRQRFALATRKLGLNRHRPEL
FT                   DTHRFVPPLESGLPPARGRREARAQPGQLALF"
FT   misc_feature    30289..30933
FT                   /note="HMMPfam hit to PF01932, Domain of unknown function
FT                   DUF85, score 4.9e-31"
FT   CDS             31273..31653
FT                   /transl_table=11
FT                   /locus_tag="BPP1663"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0973"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9U0"
FT                   /protein_id="CAE36964.1"
FT                   /translation="MTIATTLDAATSLPTAVPGRTLGALRRLARAWAGAAVPQRKWPFP
FT                   PTPPGQAQPCTPCADSQLRSAQAVQPAQAQALHAQAELSGAATQAAAQVLSTKAKIIDV
FT                   LLVAVWGAMIPALMWLGAAGGF"
FT   misc_feature    31573..31641
FT                   /note="1 probable transmembrane helix predicted for BPP1663
FT                   by TMHMM2.0 at aa 101-123"
FT   CDS             complement(join(31661..31888,31887..32522))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP1664"
FT                   /product="putative membrane protein (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0974"
FT                   /db_xref="PSEUDO:CAE36965.1"
FT   misc_feature    complement(join(31668..31724,31737..31802,31824..31889,
FT                   32001..32066,32088..32153,32184..32249,32286..32351,
FT                   32367..32432,32454..32510))
FT                   /note="9 probable transmembrane helices predicted for
FT                   BPP1664 by TMHMM2.0 at aa 4-23, 30-52, 57-79, 91-113,
FT                   123-145, 152-174, 211-233, 240-262 and 266-285"
FT   misc_feature    complement(join(31669..31888,31887..32039))
FT                   /note="This hit extended beyond the end of the feature by 0
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF00892, Integral membrane protein
FT                   DUF6, score 0.067"
FT   variation       complement(31887..31889)
FT                   /note="ATG in parapertussis; ATG(CGCGGCTATTG) in pertussis"
FT   misc_feature    complement(32109..32483)
FT                   /note="HMMPfam hit to PF00892, Integral membrane protein
FT                   DUF6, score 0.0041"
FT   misc_feature    complement(32472..32522)
FT                   /note="Signal peptide predicted for BPP1664 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.888 between residues 17 and 18"
FT   CDS             32830..33210
FT                   /transl_table=11
FT                   /gene="rplS"
FT                   /locus_tag="BPP1665"
FT                   /product="50S ribosomal protein L19"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0975"
FT                   /db_xref="GOA:Q7W9T9"
FT                   /db_xref="InterPro:IPR018257"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9T9"
FT                   /protein_id="CAE36966.1"
FT                   /translation="MNLIAILEQEEIARLTGGNAVTEFAPGDTVVVSVNVVEGTRKRVQ
FT                   AFEGVVIAKRNRGLNSSFIVRKISSGEAVERTFQLYSPQIAGIEVKRRGDVRRAKLYYL
FT                   RSRSGKSARIKEKLVLKKAKSA"
FT   misc_feature    32830..33183
FT                   /note="HMMPfam hit to PF01245, Ribosomal protein L19, score
FT                   2.4e-52"
FT   misc_feature    33097..33144
FT                   /note="PS01015 Ribosomal protein L19 signature."
FT   CDS             33436..34212
FT                   /transl_table=11
FT                   /locus_tag="BPP1666"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0976"
FT                   /db_xref="GOA:Q7W9T8"
FT                   /db_xref="HSSP:1NQZ"
FT                   /db_xref="InterPro:IPR000086"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9T8"
FT                   /protein_id="CAE36967.1"
FT                   /translation="MHGGVTLAAALFLFRCRMSDSAPSRPRRTPVRPLFDPMAQPWETA
FT                   NQGLARVDERLLTPPELRSSLRPADHWRLDPLCAAEPRAPGREGSLVAAAVLIPLVMRA
FT                   DGVRVMLTQRAAHLHDHAGQVSFPGGRIEVSDATPVAAALREAQEETGLPVQQVEVLGS
FT                   MPQYFTATGFAITPVVSLVQPDFELAPDAFEVAEVFEVPLSFLMDPANHRLYRAALPDG
FT                   YVRQYYAMPWQRYFIWGATAGMLRNLYQTVREALPG"
FT   misc_feature    33709..34110
FT                   /note="HMMPfam hit to PF00293, NUDIX domain, score 6.6e-16"
FT   CDS             34209..35363
FT                   /transl_table=11
FT                   /locus_tag="BPP1667"
FT                   /product="probable oxidoreductase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP0977"
FT                   /db_xref="GOA:Q7W9T7"
FT                   /db_xref="HSSP:1LQA"
FT                   /db_xref="InterPro:IPR020471"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9T7"
FT                   /protein_id="CAE36968.1"
FT                   /translation="MTPPAGVIFPISTARRGAPFFIPAQGASQSGQDLAVKYRKLGHTD
FT                   LDVSLIGLGTMTWGEQNTEAQAHEQLDYALAHGINLVDAAEMYPVPPKPETQGRTESCI
FT                   GSWLARTGRRHEVVLASKAAGPVRDAKRPSHIRDGKTFLDRKNLTQALDASLKRLQTDY
FT                   LDLYQLHWPDRTTNTFGKLAYPWVDDAHTVPIEETLEVLQDFVRAGKVRHVGLSNETPW
FT                   GVARFLQAAEKHGLPKVATIQNPYNLLNRIFEIGLAEFSHREGVGLLAYSPLAMGILSG
FT                   KYLDGARPEGSRLALFTRFTRYSNPQAEAAARDYVMLARDHGLAPAQMALAWVNQRPFV
FT                   SSNLMGATTLAQLKENIESVEVTLSDEVLQGIEAIHARQPNPAP"
FT   misc_feature    34332..35345
FT                   /note="HMMPfam hit to PF00248, Aldo/keto reductase family,
FT                   score 1.5e-46"
FT   CDS             complement(35622..36524)
FT                   /transl_table=11
FT                   /locus_tag="BPP1668"
FT                   /product="putative ATP/GTP-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2689"
FT                   /db_xref="GOA:P67680"
FT                   /db_xref="InterPro:IPR004881"
FT                   /db_xref="UniProtKB/Swiss-Prot:P67680"
FT                   /protein_id="CAE36969.1"
FT                   /translation="MSSNQAEGLIIAAHGRHYTVELADGSLRQCFPRGKKNGPAVGDRV
FT                   RITPQGRDEGAIEAVLPRRNLLFRSDEMRVKQFAANVDQLLIVVAVEPTFADDLTGRSL
FT                   AGAWSADIEPVIVLNKIDLPNGLDAARARLEPLRRLGVPVIELSAQDHAMVHERLAPRL
FT                   AGRTSLLLGQSGMGKSTLLNTLVPHAQAATREYSAALDMGRHTTTSTRLYHLPEPGGDL
FT                   IDSPGFQAFGLQHLNGEQILRGFPEFAPHIEHCRFYNCTHRHEPGCGVLAALQAGQIDA
FT                   GRYALYLRILDENAAARPY"
FT   misc_feature    complement(35649..36116)
FT                   /note="HMMPfam hit to PF03193, Protein of unknown function,
FT                   DUF258, score 1.7e-48"
FT   misc_feature    complement(35988..36011)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             complement(36521..37825)
FT                   /transl_table=11
FT                   /locus_tag="BPP1669"
FT                   /product="putative integral membrane zinc-metalloprotease"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2688"
FT                   /db_xref="GOA:Q7W9T5"
FT                   /db_xref="InterPro:IPR001915"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9T5"
FT                   /protein_id="CAE36970.1"
FT                   /translation="MPLKRTIFAYPCPVTAPVPLFTLFFVVLLLADIGVRLWLATRQIR
FT                   HVAANRQSVPPEFAPRIGLHSHQRAADYTVARVRLGMLERVYDAAILVALTLLGGLQFI
FT                   DLWLGQLTQHDFLRQLLLLACVPLLLGLLGLPFTLWRQFRLEGRFGFNRMTPALFFSDA
FT                   VKGVLVALVLGLPLAAAVLWLMAGAGAYWWLWAWGLWLGYNLLLLLIYPTFIAPLFNKF
FT                   TPLNDPELAGRIRQLAQRCGFALNGLFVMDGSRRSTHGNAYFTGFGKSRRIVFFDTLLA
FT                   RLNGDEIEAVLAHELGHFARRHIIKRLALSFAGALVFFAALGWLARQPWFYEGLGVLPN
FT                   LGGRNDAMALVLFFLVVPVFTFMLTPLASWYSRRDEFEADRYAAAQSSPDRLVSALVKL
FT                   YDDNAATLTPDPVHSAFYDSHPPAAVRIRHLMAGA"
FT   misc_feature    complement(36536..37129)
FT                   /note="HMMPfam hit to PF01435, Peptidase family M48, score
FT                   5.3e-47"
FT   misc_feature    complement(join(36710..36775,36836..36901,37172..37237,
FT                   37268..37333,37397..37462,37493..37558,37709..37765))
FT                   /note="7 probable transmembrane helices predicted for
FT                   BPP1669 by TMHMM2.0 at aa 20-39, 89-111, 121-143, 164-186,
FT                   196-218, 308-330 and 350-372"
FT   CDS             37831..38376
FT                   /transl_table=11
FT                   /locus_tag="BPP1670"
FT                   /product="oligoribonuclease"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2687"
FT                   /db_xref="GOA:Q7W9T4"
FT                   /db_xref="InterPro:IPR006055"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9T4"
FT                   /protein_id="CAE36971.1"
FT                   /translation="MAANENRLVWLDMEMTGLDPEKERIIEVAVVVTEADLTVVAEGPV
FT                   LVVHQPDSLLDAMDNWNKSTHGKSGLIEKVKASTLGEAQAEQILLEFLAEHVPAGKSPL
FT                   CGNTISQDRRFMYAYMPNLERFFHYRNLDVSTLKELARRWAPAVYKGFDKKSRHEALAD
FT                   IYESIDELKYYREHLLKV"
FT   misc_feature    37852..38367
FT                   /note="HMMPfam hit to PF00929, Exonuclease, score 1e-35"
FT   CDS             38410..39096
FT                   /transl_table=11
FT                   /locus_tag="BPP1671"
FT                   /product="hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2686"
FT                   /db_xref="InterPro:IPR004443"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9T3"
FT                   /protein_id="CAE36972.1"
FT                   /translation="MDIERVEQVRAVERLAHRRGLALMPRAGLAAADFVAARLPAGAQV
FT                   LALAGPGNNGGDVLVAATLLQARGYRVAVVMPAGPARLPDDARRAWQDWCAAGGQASAD
FT                   LPAHAPALVIDGLFGIGLARPLGGAWQGLIDQVNAWRVPVLALDVPSGLSAASGQPLGD
FT                   PPGRPVRATWTLSFIGVPAALRAPGAAAWCGEQYLSLLGLTPAFLAEAVGPCGQATATA
FT                   ARRSGP"
FT   CDS             complement(39068..39997)
FT                   /transl_table=11
FT                   /gene="paaX"
FT                   /locus_tag="BPP1672"
FT                   /product="phenylacetic acid degradation operon negative
FT                   regulatory protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2685"
FT                   /db_xref="InterPro:IPR012906"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9T2"
FT                   /protein_id="CAE36973.1"
FT                   /translation="MASTPSPLDRFLSRLLKNDPPRAKSLCVSLLGDALAPHGGAIWLG
FT                   DLIELLAPIGINERLLRTSVFRLVAQGWLQSERHGRRSLYLLSEHGLRHTAHASQRIYD
FT                   GPARAWNGEWTLVALPRAGNNGLAERGELRRELLWEGFGMVAPGLFAHPQTEARAAHDI
FT                   LEKLGIPDKALVLSARDLAGAGGLPIASLAGQCWNLDEVADQYRLFSRNFGPVEKLLDP
FT                   PPPPAQAFAVRVLLLHNWRRIVLHDPQLPPPMEPDGWPGNAARALCRRIYWQVFDASER
FT                   HLDAVAGRENARYRPAQADIMGRFGGRP"
FT   CDS             40169..41152
FT                   /transl_table=11
FT                   /gene="paaA"
FT                   /locus_tag="BPP1673"
FT                   /product="phenylacetic acid degradation protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2684"
FT                   /db_xref="GOA:Q7W9T1"
FT                   /db_xref="InterPro:IPR011881"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9T1"
FT                   /protein_id="CAE36974.1"
FT                   /translation="MYAQLVETGGGKVKHVDQLEGPEQARRIDDGVRIEPKDWMPEAYR
FT                   KTLVRQISQHAHSEIVGMLPEGNWITRAPSLKRKAILLAKVQDEAGHGLYLYSAAETLG
FT                   VSREDLIDDLHTGRAKYSSIFNYPTLTWADIGMIGWLVDGSAIINQIPLCRCSYGPYAR
FT                   AMVRVCKEESFHQRQGYDLLIQMCLHGTPEQKAMCQEAFNRWWWPALMMFGPSDADSPN
FT                   SAQSMQWKIKLFSNDELRQKMVDQTVPQAEYLGLTVPDPDLKWNAERGHYDFGAIDWDE
FT                   FYAVIKGHGPCNRERLAARVKAHEDGAWVREAMAAHADKQARRKAA"
FT   CDS             41217..41501
FT                   /transl_table=11
FT                   /gene="paaB"
FT                   /locus_tag="BPP1674"
FT                   /product="phenylacetic acid degradation protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2683"
FT                   /db_xref="InterPro:IPR009359"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9T0"
FT                   /protein_id="CAE36975.1"
FT                   /translation="MSKDWPLWEVFIRSQHGLAHKHVGSLHAPDAEMAINHARDVYTRR
FT                   NEGLSIWVVRASDIVASSPGDKEPLFEPANSKVYRHPTFFPMPDEIKHM"
FT   CDS             41517..42281
FT                   /transl_table=11
FT                   /gene="paaC"
FT                   /locus_tag="BPP1675"
FT                   /product="phenylacetic acid degradation protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2682"
FT                   /db_xref="GOA:Q7W9S9"
FT                   /db_xref="HSSP:1OTK"
FT                   /db_xref="InterPro:IPR011882"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9S9"
FT                   /protein_id="CAE36976.1"
FT                   /translation="MDKSLFEYLLRLGDTTLVLSQRLGQWCGHGPVLEEDLALTNTALD
FT                   LLGQARMWLTLAGEVEGAGRDEDRLAYLRDAPQFRNLLLVERPNGHYGDTMARQFLFDT
FT                   WHYFLLIRLARSADERVAAIAAKALKEVTYHARRSADLVVRLGDGTALSHARMQAAIDA
FT                   AWPYVGEMFVDDAIDQDLAARGIACELSSLRDEWLAQVREVLDEATLAMPQEDEAFHPA
FT                   HRGGRQGRHTEHLGYILAEMQHLQRAYPGASW"
FT   CDS             42278..42784
FT                   /transl_table=11
FT                   /gene="paaD"
FT                   /locus_tag="BPP1676"
FT                   /product="phenylacetic acid degradation protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2681"
FT                   /db_xref="InterPro:IPR011883"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9S8"
FT                   /protein_id="CAE36977.1"
FT                   /translation="MNALPRVPAGQVLAWLESVPDPEIPVLSVVDLGVVRDIGWDGDTC
FT                   VVTITPTYSGCPAMREITHDIETTLAGHGLASVRVETRLAPAWTTDWMTARGRAALRQY
FT                   GIAAPVERAVDISGISRRRAAPAIECPHCGSLDTRLISHFGSTSCKALYRCVACREPFD
FT                   YFKPH"
FT   misc_feature    42308..42523
FT                   /note="HMMPfam hit to PF01883, Domain of unknown function
FT                   DUF59, score 1.2e-17"
FT   CDS             42796..43884
FT                   /transl_table=11
FT                   /gene="paaE"
FT                   /locus_tag="BPP1677"
FT                   /product="probable phenylacetic acid degradation NADH
FT                   oxidoreductase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2680"
FT                   /db_xref="GOA:Q7W9S7"
FT                   /db_xref="HSSP:1AWD"
FT                   /db_xref="InterPro:IPR011884"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9S7"
FT                   /protein_id="CAE36978.1"
FT                   /translation="MSHNPFHMLKVASVARNTRDAVVVTFDLPPELAGDFRFRPGQYLT
FT                   LRTRLDGEEVRRSYSICSAPGDGVLRVAIKKVDEGVFSNWANHELQPGQSLEVMPPAGN
FT                   FTVDFDPDNARHYVAFAVGSGITPVFSLVKSALSAEPRSRFTLFFGNRASSSVLFREEI
FT                   EDLKNLYMERFSLVYIMSRESQDIELFNGRLDGDKVDQLLTAWMRPGDIDYAFVCGPQT
FT                   MIESVVEHLQARGMPKSHIKFELFGAPKGPRALRTGRDAPAAPGKGQCEVTVVQDGHSR
FT                   TFFIDKNKDSVLDSALAQGVELPYSCKGGVCSTCRCKVVEGEVDMDANFALEDYEVARG
FT                   FVLSCQSYPVSDRLVIDFDQET"
FT   misc_feature    42817..43116
FT                   /note="HMMPfam hit to PF00970, Oxidoreductase FAD-binding
FT                   domain, score 6.2e-17"
FT   misc_feature    43135..43485
FT                   /note="HMMPfam hit to PF00175, Oxidoreductase NAD-binding
FT                   domain, score 2.9e-13"
FT   misc_feature    43615..43848
FT                   /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster
FT                   binding domain, score 2e-12"
FT   misc_feature    43714..43740
FT                   /note="PS00197 2Fe-2S ferredoxins, iron-sulfur binding
FT                   region signature."
FT   CDS             43935..45599
FT                   /transl_table=11
FT                   /locus_tag="BPP1678"
FT                   /product="putative oxidoreductase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2678"
FT                   /db_xref="GOA:Q7W9S6"
FT                   /db_xref="InterPro:IPR016162"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9S6"
FT                   /protein_id="CAE36979.1"
FT                   /translation="MSQDFFERHQPMLQKALEAAAQRGYWSPFPESPSPRNYGETAAQD
FT                   GQAAFEALRGKPFALDLPQASGAVGGEVSPFGFELGITYPQVAPEALVAASSKALEQWR
FT                   RAGPRAWVGVSLEILQRLNRRSFEMAHAVQHTTGQAFMMAFQAGGPHAQDCGVEAVTYA
FT                   WQEMSRIPGVALWEKPQGKHDPIKMEKRFTVVPRGIALVIGCSTFPTWNGYPGLFASLA
FT                   TGNTVIVKPHPGAILPLALTVQVAREVLGEAGFDPDVVLLAAHPAGDDTAQRLALDPAV
FT                   RIVDFTGSSANGNWLEQNARQALVYTEKAGVNQVLIDSTDDLKGVARNLAFSLALYSGQ
FT                   MCTAPQNIYVPRDGIQTAEGRVGFDEVAAALGAALDKLAGDPAKAVELTGAVQNDATVA
FT                   RIGKARQLGLPVLADSKALAHPQFEQARVHTPLLLRADAGNDALGQEWFGPIAFVVATD
FT                   STAHSIELAGASVRQHGALSLSAYTTDEAVASRVQDMAEHSGVSLSLNLTGGVFVNQTA
FT                   AFSDFHGTGANPAANAALSDSAFVANRFRVVQTRRHV"
FT   misc_feature    44169..45584
FT                   /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase
FT                   family, score 4.4e-08"
FT   CDS             45610..46398
FT                   /transl_table=11
FT                   /gene="paaG"
FT                   /locus_tag="BPP1679"
FT                   /product="probable enoyl-CoA hydratase"
FT                   /EC_number="4.2.1.17"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2677"
FT                   /db_xref="GOA:Q7W9S5"
FT                   /db_xref="HSSP:1EY3"
FT                   /db_xref="InterPro:IPR011968"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9S5"
FT                   /protein_id="CAE36980.1"
FT                   /translation="MTYQDILFELAGGVARLTLNRPDKLNSFTARMHGEVADALGRIER
FT                   EGARVLVLTGAGRGFCAGQDLSERRPTADGAPPDLGETVEKFYGPLVRRLAALPLPVVV
FT                   GVNGVAAGAGANLALAGDIVIARESASFIQSFCRLGLIPDTGGTFALPRLVGRARAAGL
FT                   ALLGNKLSARQAQDWGLIWQCVADDEFDSALDGLAAHFAQAPTKGLAFTKRALQASLGN
FT                   DLSTQLDLERDMMRELGRSADYAEGVAAFLDKREPQFKGK"
FT   misc_feature    45652..46167
FT                   /note="HMMPfam hit to PF00378, Enoyl-CoA
FT                   hydratase/isomerase family, score 6.4e-46"
FT   CDS             46398..46868
FT                   /transl_table=11
FT                   /gene="paaI"
FT                   /locus_tag="BPP1680"
FT                   /product="phenylacetic acid degradation protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2676"
FT                   /db_xref="InterPro:IPR006683"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9S4"
FT                   /protein_id="CAE36981.1"
FT                   /translation="MNAHVPAVDVPSDPHELARAVGATMYAGDAASQGLGMTVVEIAPG
FT                   YAKLSMPVRADMLNGHKTCHGGFIFALADSAFAFSCNSRNVSTVASGCTIDYLAPGLEG
FT                   DVLTAVAQERSLAGRTGIYDVTVTNQQGRSVAVFRGRSYRIRGQVVGEPPQD"
FT   misc_feature    46470..46832
FT                   /note="HMMPfam hit to PF02584, Uncharacterized protein
FT                   PaaI, COG2050, score 3.1e-34"
FT   CDS             47060..48256
FT                   /transl_table=11
FT                   /gene="paaK"
FT                   /locus_tag="BPP1681"
FT                   /product="phenylacetate-coenzyme A ligase"
FT                   /EC_number="6.2.1.30"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2675"
FT                   /db_xref="GOA:Q7W9S3"
FT                   /db_xref="InterPro:IPR011880"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9S3"
FT                   /protein_id="CAE36982.1"
FT                   /translation="MPHYKKAFDAAGVHPEDLQQLSDIARFPFTTKQDLRDNYPFGMFA
FT                   VPRERVSRVHASSGTTGKPTVVGYTARDLDNWANLVARSIRAAGGKPGDIVHVAYGYGL
FT                   FTGGLGAHYGAERLGCTVVPMSGGQTEKQVQLINDFRPDIIMVTPSYYCNILEEQRRQG
FT                   MDPRQSSLRIGIFGAEPWTGQMRADIEAEGGIDAVDIYGLSEVMGPGVASECVETKDGP
FT                   VVWEDHFYAEIVNPDTGEPVADGEPGELVFTSLTKEAMPIIRYRTRDLTRLLPPTSRSM
FT                   RRIGKITGRSDDMLIVRGVNLFPIQVEELVLKIAQLAPHYQLVLSRSGNLDELEILTEV
FT                   RAEFSTLTEAERAGLGKQLQHAVKSYIGVSARVQVADTGFVERTLTGKARRVIDKRPR"
FT   CDS             complement(join(48310..48630,48632..48931))
FT                   /pseudo
FT                   /transl_table=11
FT                   /gene="fimX"
FT                   /locus_tag="BPP1682"
FT                   /product="fimbrial protein (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2674"
FT                   /db_xref="PSEUDO:CAE36983.1"
FT   misc_feature    complement(join(48315..48630,48632..48850))
FT                   /note="This hit extended beyond the end of the feature by 0
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF00419, Fimbrial protein, score
FT                   1.7e-18"
FT   variation       complement(48630..48631)
FT                   /note="(G)2 in parapertussis; (G)1 in pertussis"
FT   misc_feature    complement(48857..48931)
FT                   /note="Signal peptide predicted for BPP1682 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 1.000 between residues 25 and 26"
FT   CDS             complement(49077..49667)
FT                   /transl_table=11
FT                   /gene="fimN"
FT                   /locus_tag="BPP1683"
FT                   /product="fimbrial subunit protein"
FT                   /note="Similar to Bordetella bronchiseptica fimbrial
FT                   subunit protein FimN SWALL:Q9F8W4 (EMBL:AF231910) (209 aa)
FT                   fasta scores: E(): 1.2e-71, 97.5% id in 200 aa"
FT                   /db_xref="GOA:Q7W9S2"
FT                   /db_xref="InterPro:IPR014779"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9S2"
FT                   /protein_id="CAE36984.1"
FT                   /translation="MKHFRRHRGLALACLASALGLHTAVHANDGTIVITGNIVDNTCEV
FT                   VDPPQPNHIKVVHLPKISTSALKKTGDTAGATPFSIKLQNCPESLGNGVKLYFEPGPTT
FT                   DYSTRDLTAYKLAYTANSNIVAGQVAEGVQIRIANLDGTQIPMGENAAGQNARGFDPVA
FT                   QTGQQDKKEVTLRYLAAYVKKATGTISASAITT"
FT   misc_feature    complement(49089..49580)
FT                   /note="HMMPfam hit to PF00419, Fimbrial protein, score
FT                   6.5e-12"
FT   misc_feature    complement(49587..49667)
FT                   /note="Signal peptide predicted for BPP1683 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.999 between residues 27 and 28"
FT   variation       complement(49727..49736)
FT                   /note="phase variable poly C"
FT   CDS             complement(49780..50412)
FT                   /transl_table=11
FT                   /locus_tag="BPP1684"
FT                   /product="fimbrial protein"
FT                   /note="Similar to Bordetella pertussis serotype 2 fimbrial
FT                   subunit precursor Fim2 SWALL:FM2_BORPE (SWALL:P05788) (207
FT                   aa) fasta scores: E(): 1.1e-50, 70.64% id in 201 aa, and to
FT                   Bordetella bronchiseptica fimbrial subunit precursor Fim2
FT                   SWALL:Q44885 (EMBL:X74119) (208 aa) fasta scores: E():
FT                   2e-47, 67% id in 197 aa"
FT                   /db_xref="GOA:Q7W9S1"
FT                   /db_xref="InterPro:IPR014779"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9S1"
FT                   /protein_id="CAE36985.1"
FT                   /translation="MKQEFSSIQFKAALLAAGLVLQVPAHANDGTIVITGAITDTTCII
FT                   EDPSDPNHTKVVQLPKISKSALKVKGDQAGRTPFTISLRDCPADLGNGVKVYFEPGPTT
FT                   NYATGDLKAYKLAYATNPKATPLNSIVAATPATGVEIRISNLDDSKIPMGVDVTNQRAQ
FT                   GFNPVEQTGDTNKRTVTMRYLASYVKADGDIQASAITTYVGFSVVYP"
FT   misc_feature    complement(49786..50325)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF00419, Fimbrial protein, score
FT                   1.3e-09"
FT   misc_feature    complement(50332..50412)
FT                   /note="Signal peptide predicted for BPP1684 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 1.000 between residues 27 and 28"
FT   CDS             complement(50552..51829)
FT                   /transl_table=11
FT                   /locus_tag="BPP1685"
FT                   /product="putative inner membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2354"
FT                   /db_xref="GOA:Q7W9S0"
FT                   /db_xref="InterPro:IPR004681"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9S0"
FT                   /protein_id="CAE36986.1"
FT                   /translation="MSQLMILSMLIFFGLSVPVAVAIGIAALTGVSVGGLPWLVVAQQI
FT                   YAALDKYPLVAIPFFILAGNLMEAGGISERMVEFAKSLVGGIQGGLACTCVLTCMIFAA
FT                   VAGSSVATTFAVGAILIPAMVRHGYPAPFAASLQASAAELGVIIPPSIPMILFAVSTDT
FT                   STGELFIAGVMPGVLIGLALMLYVWLYARRNGLGKQDGAGRLPVWQAFKRAWLALLMPV
FT                   IILGGIYGGVFTPTEASVVAVMYAVLIGWLVYRRLSFGLISTTLHRSVISTAVIMFVIA
FT                   NAGVFSFLLNRAGIPDALGVWLSQLFDNHFTFLMGVNAALFVIGMFIETSASVVVLAPL
FT                   LLPVAMKFGVEPVHFGVIMVVNLALGMITPPFGVNLFAACAVAKLPLERLVRPLVPFVG
FT                   VVVACLLVITYWPGLSLGLRDLVYGR"
FT   misc_feature    complement(join(50594..50659,50699..50764,50825..50890,
FT                   50954..51019,51065..51115,51131..51187,51260..51325,
FT                   51347..51412,51458..51523,51632..51697,51743..51808))
FT                   /note="11 probable transmembrane helices predicted for
FT                   BPP1685 by TMHMM2.0 at aa 7-29, 44-66, 102-124, 139-161,
FT                   168-190, 214-233, 238-255, 270-292, 313-335, 355-377 and
FT                   390-412"
FT   misc_feature    complement(50969..51442)
FT                   /note="HMMPfam hit to PF00597, DedA family, score 3.7e-13"
FT   misc_feature    complement(51764..51829)
FT                   /note="Signal peptide predicted for BPP1685 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.995) with cleavage site
FT                   probability 0.642 between residues 22 and 23"
FT   CDS             complement(51870..52370)
FT                   /transl_table=11
FT                   /locus_tag="BPP1686"
FT                   /product="putative inner membrane transport protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2353"
FT                   /db_xref="InterPro:IPR007387"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9R9"
FT                   /protein_id="CAE36987.1"
FT                   /translation="MRLLCTAERALFRLVSAIAQILLIAAACAAFYQVIARFILHSPAD
FT                   WSEVATRALLIWTVLLGVALAFRHGAMISVELLRNTLQGAARRLLEHAIALTCIAFLAF
FT                   IAWIGGQMTWRVRFQNVPSLDISISWIYLAIPVGATLAVIAVLARWLAGEQDDVPVRND
FT                   AQG"
FT   misc_feature    complement(join(51927..51992,52038..52103,52167..52223,
FT                   52269..52334))
FT                   /note="4 probable transmembrane helices predicted for
FT                   BPP1686 by TMHMM2.0 at aa 12-34, 49-68, 89-111 and 126-148"
FT   CDS             complement(52456..53442)
FT                   /transl_table=11
FT                   /locus_tag="BPP1687"
FT                   /product="putative periplasmic substrate-binding transport
FT                   protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2352"
FT                   /db_xref="GOA:Q7W9R8"
FT                   /db_xref="InterPro:IPR018389"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9R8"
FT                   /protein_id="CAE36988.1"
FT                   /translation="MRKSWLAAATLAACTVATSLPAAAQTTLKMAYALSTSSHYGAGAE
FT                   AFAKSIEGASGGKYKVQQFANSALGGEREVIEGLQIGTIDLAIVSTGATLNFVPETGVF
FT                   DIPFLLRDLPHARAVLDSKIGQDMLAKFPDRGIIALAWGEQGFRHLTNNVRPVKTPADA
FT                   KGLKIRTTENPIHITAFRQIGILPTPMAWPEVATALQQGTIDGQENPLSVITSAKLSQL
FT                   QKYLSLTGHVYGPALVLMSANVYNGLSDAEKASFKAAGKDSAQAMRAYVDNIEQTGVEQ
FT                   LKKEGMEVSEVDRAAFAAAFAAAVEPAYAEYYKKFDKQLIQSIRDTK"
FT   misc_feature    complement(52495..53355)
FT                   /note="HMMPfam hit to PF03480, Bacterial extracellular
FT                   solute-binding protein, family 7, score 3.4e-94"
FT   misc_feature    complement(53371..53442)
FT                   /note="Signal peptide predicted for BPP1687 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.994 between residues 24 and 25"
FT   misc_feature    complement(53401..53433)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             53557..56088
FT                   /transl_table=11
FT                   /locus_tag="BPP1688"
FT                   /product="putative inner membrane transport permease"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2351"
FT                   /db_xref="GOA:Q7W9R7"
FT                   /db_xref="InterPro:IPR003838"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9R7"
FT                   /protein_id="CAE36989.1"
FT                   /translation="MMDFPDARSPARQGWLPTLRLGLRMMMRDARAGELRLLVLALVVA
FT                   VAAVTSVGFLADRVGRALERDAGQMLGADLVLEADEPVPAEFAQRARQAGLSVSSTLQF
FT                   PSMASANGNAQLASLKAVEPGYPLRGSLRVAEAPFAQDAPTRDVPALGAVWVDAQLLTL
FT                   LGVQVGDTLGLGDARLRIERVITYEPDRGMQFVNVASRVMLRTADLPATGLVAPGSRIG
FT                   YALLAAGQPDAVAAYGQWLGQHLQRGQKLATLESGRPEVRRTLDRAQRFLALVALLAVL
FT                   ISAVAVALAAGRFMQRHRDGIAVMRCLGAVQAQVTRMLVLEFALVGLAASAVGCLLGYA
FT                   VHQGLVLALGQLIDTSLPAPSAIPAAQGVLTGLLMLLGFALPSLAQLRHVPPARVLRRD
FT                   ADRLRARGAGGYALGAVGLGLLIWWFAGDARLGAVVAGGFLGAFAVFALVAWLAVQALA
FT                   RLRRAAAGLPALRFALAGVVRRRAATITQVCALAIGLMALLLLTMTRTDLIAGWQRTLP
FT                   PDAPNRFLINVQPDQRDAVMQRLADAGLGQVHLWPMVRGRLVSVNGRPVGPDDFDEPRA
FT                   KRLVDREFNLSYGDTLPESNRVEQGRWLRPDAAEVSLESGLARSLKLAVGDKLGFDIAG
FT                   QQVEVVVSGTRRVDWDSMRVNFFAILSPQALADAPQSWITSFHLPPAKAAVLRDLVQAF
FT                   PNLTVFDVGAILGQLQTVLDEVVKAVQLLFLFTLAAGVLVLAAALTATRDERVREAAVL
FT                   RALGATRRQLARAQRLELLAVGGLAGLLAAGGATAVAWVLSTQVFDFAISLQWWPWLAG
FT                   ALAGMLGAWAGGALALRGVLRTPPLVTLREA"
FT   misc_feature    join(53656..53724,54370..54438,54511..54579,54643..54711,
FT                   54769..54837,54850..54918,55000..55068,55711..55779,
FT                   55861..55929,55972..56040)
FT                   /note="10 probable transmembrane helices predicted for
FT                   BPP1688 by TMHMM2.0 at aa 34-56, 272-294, 319-341, 363-385,
FT                   405-427, 432-454, 482-504, 719-741, 769-791 and 806-828"
FT   misc_feature    54061..54744
FT                   /note="HMMPfam hit to PF02687, Predicted permease, score
FT                   2.5e-09"
FT   misc_feature    55459..56076
FT                   /note="HMMPfam hit to PF02687, Predicted permease, score
FT                   0.00048"
FT   CDS             56088..56513
FT                   /transl_table=11
FT                   /locus_tag="BPP1689"
FT                   /product="globin-like protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2350"
FT                   /db_xref="GOA:Q7W9R6"
FT                   /db_xref="InterPro:IPR019795"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9R6"
FT                   /protein_id="CAE36990.1"
FT                   /translation="MTTTRVQPISEPLDTSKTVFDMLGGEPGVRELVDRFYDLMDMESD
FT                   FKALRDAHGPSLEQARDKLFWFLCGYFGGPDHYIERFGHPRLRARHLPFSIGEIERDQW
FT                   VACMGRAMQDQQLPAALVDRLLQAFYGTADWMRNRAG"
FT   CDS             56503..57237
FT                   /transl_table=11
FT                   /locus_tag="BPP1690"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2349"
FT                   /db_xref="GOA:Q7W9R5"
FT                   /db_xref="InterPro:IPR010440"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9R5"
FT                   /protein_id="CAE36991.1"
FT                   /translation="MPADTRARTERLAWREAPAGAMLYDAARIEAPGPALFDPSSYGAA
FT                   AQPVAAGGRQAAWFVATPGWQGVLRGYRRGGLAARVSRDAYVWQGEARTRGLREYRLLA
FT                   HMREQGLAVPAPLAAGYWRHGLTYRAAILVERIPAARPLASLLDEPAWEAVARAIAAMH
FT                   RAGVWHADLNAFNILLDPGGLAWLIDFDRGTAGGVSERGRQGNLARLRRSLVKVGGERG
FT                   QAFWQRLEPAYRAAWARGTARA"
FT   CDS             57270..58472
FT                   /transl_table=11
FT                   /locus_tag="BPP1691"
FT                   /product="putative polyamine transport protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2348"
FT                   /db_xref="GOA:Q7W9R4"
FT                   /db_xref="HSSP:1A99"
FT                   /db_xref="InterPro:IPR001188"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9R4"
FT                   /protein_id="CAE36992.1"
FT                   /translation="MFRAGFATSPLLKGFMIPPFGNSRKSHHGRGFAMKFSARLRCVLG
FT                   GAVLAAAMSPAAAQDKVVNVYNWAEYTAPDTIPGFEKETGIKVRYDVYDNNDTLQAKLL
FT                   TGKSGYDVVVPSTHYASRQIEGGLYQKLDKSKIPNWKNLDPDVMALVATIDPGNQYVIP
FT                   WGYGTNGLGYNVTKVRQIMGEGVDLANWDMLFKPENAAKLKECGISMLDEAAQVFPAVL
FT                   KYLGKDPNSANTDDYKEALALLKQIRPYIRQFSSSGYIDELAVGDLCMVYGFSGDVMIA
FT                   RRRAQEARKPYEINYFIPKGGAPAWFDVMAIPKDAPHPEEAHAFINYIETPQVHAAITN
FT                   TMFYPNANKAAREFVVKDVADNPMIYPPADVSKTLYVIKAQPLNVQRLQTRMWAELKSG
FT                   R"
FT   misc_feature    57270..57443
FT                   /note="Signal peptide predicted for BPP1691 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.996) with cleavage site
FT                   probability 0.986 between residues 58 and 59"
FT   misc_feature    57462..58463
FT                   /note="HMMPfam hit to PF01547, Bacterial extracellular
FT                   solute-binding protein, score 6e-12"
FT   misc_feature    57570..57593
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             58479..59606
FT                   /transl_table=11
FT                   /locus_tag="BPP1692"
FT                   /product="putative polyamine transport ATP-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2347"
FT                   /db_xref="GOA:Q7W9R3"
FT                   /db_xref="HSSP:1G29"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9R3"
FT                   /protein_id="CAE36993.1"
FT                   /translation="MSDIRYSAQHSADPDEFVKVSDVVKIFGDVVAVQSVNLSVRRNEI
FT                   FALLGSSGSGKSTLLRMLAGFEDATSGQILLDGEDITNVPPYRRPVNMMFQSYALFPHM
FT                   TVEANVAFGLKQEGVDRAEIHDRVFEALDLVQMAGYARRKPHQLSGGQQQRVALARSLV
FT                   KRPKLLLLDEPMSALDKQIRQKTQIELVKILQQVGVTCIMVTHDQQEAMTMAHRLAVMT
FT                   EGQIVQCGTPQDVYEFPNSRFVAGFIGSTNLFSGTIVVDEPDHVAIESGELTRPLYVSH
FT                   GVSEPLGMEVHVSIRPERLVVLREQPEAEHNWAHGMVTHMAWMGSYGLYQIRLDSGKIV
FT                   EASVPSLQLARQDAPGIDEEVFVSWDADSATVFSS"
FT   misc_feature    58605..59150
FT                   /note="HMMPfam hit to PF00005, ABC transporter, score
FT                   7.3e-64"
FT   misc_feature    58626..58649
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    58920..58964
FT                   /note="PS00211 ABC transporters family signature."
FT   CDS             59603..60517
FT                   /transl_table=11
FT                   /locus_tag="BPP1693"
FT                   /product="putative inner membrane permease polyamine
FT                   transport protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2346"
FT                   /db_xref="GOA:Q7W9R2"
FT                   /db_xref="InterPro:IPR000515"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9R2"
FT                   /protein_id="CAE36994.1"
FT                   /translation="MRRFALPRPSRRTVAIVPPFAWLVLFLLVPFLLVFKISFAELQFG
FT                   IPPYTPLAEFKDEAVQLSLHLRGYVLLFTDSLYVATYLNSVKMAAITTLCCILIGYPIA
FT                   YYIARSAPALRNLLLLAVILPFWTSLLLRVYAWVGILRNDGLLNKLLMSLGLISSPLEI
FT                   YRTDLAVYIGLVYAYLPFFILPLYANLVKMDLRLLEAAYDLGARPWQAFWRITVPLSRP
FT                   GVIAGAMLVFIPSVGEYVIPEMLGGADTLMMGRVMWNEFFNNTDWPMASAVTCVMVLLL
FT                   LVPLALFQYNQIKQQDFAGGGRR"
FT   misc_feature    59603..59722
FT                   /note="Signal peptide predicted for BPP1693 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.639) with cleavage site
FT                   probability 0.499 between residues 40 and 41"
FT   misc_feature    join(59639..59707,59864..59932,59951..60019,60107..60175,
FT                   60272..60340,60398..60466)
FT                   /note="6 probable transmembrane helices predicted for
FT                   BPP1693 by TMHMM2.0 at aa 13-35, 88-110, 117-139, 169-191,
FT                   224-246 and 266-288"
FT   misc_feature    60167..60388
FT                   /note="HMMPfam hit to PF00528, Binding-protein-dependent
FT                   transport systems inner membrane component, score 2e-18"
FT   misc_feature    60170..60256
FT                   /note="PS00402 Binding-protein-dependent transport systems
FT                   inner membrane comp. sign."
FT   CDS             60514..61323
FT                   /transl_table=11
FT                   /locus_tag="BPP1694"
FT                   /product="putative inner membrane permease polyamine
FT                   transport protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2345"
FT                   /db_xref="GOA:Q7W9R1"
FT                   /db_xref="InterPro:IPR000515"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9R1"
FT                   /protein_id="CAE36995.1"
FT                   /translation="MKGPNKSLRMLVLGLGYFFLYVPIISLMVFSFNDSPVVTSWTGFS
FT                   LRWYGLLLEDSALLRAAWLSFKIAVLTATAATIIGTWAGYVLGRMGRFRGFTLYVGMLS
FT                   APLVIPEVVLGISLLLMFVEMRGHLGWPEQNGVFTIWVGHVTLCMAFVAVVVQSRIRDM
FT                   DRSLEEAALDLGATPIKVFFAITLPLIAPALVSAWLLAFTLSLDDVVIASFLSGPGSST
FT                   LPMEVFSRVRLGLKPEINALATLFILAVGTCVIIANRLQWRKEADNR"
FT   misc_feature    60514..60606
FT                   /note="Signal peptide predicted for BPP1694 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.670) with cleavage site
FT                   probability 0.288 between residues 31 and 32"
FT   misc_feature    join(60532..60600,60715..60774,60811..60879,60922..60981,
FT                   61054..61122,61228..61287)
FT                   /note="6 probable transmembrane helices predicted for
FT                   BPP1694 by TMHMM2.0 at aa 7-29, 68-87, 100-122, 137-156,
FT                   181-203 and 239-258"
FT   misc_feature    60691..60783
FT                   /note="PS00044 Bacterial regulatory proteins, lysR family
FT                   signature."
FT   misc_feature    60988..61209
FT                   /note="HMMPfam hit to PF00528, Binding-protein-dependent
FT                   transport systems inner membrane component, score 8.5e-10"
FT   misc_feature    60991..61077
FT                   /note="PS00402 Binding-protein-dependent transport systems
FT                   inner membrane comp. sign."
FT   CDS             61320..61676
FT                   /transl_table=11
FT                   /locus_tag="BPP1695"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2344"
FT                   /db_xref="InterPro:IPR012335"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9R0"
FT                   /protein_id="CAE36996.1"
FT                   /translation="MKQVTLYGLNKCSTCVKARDWLAARGVAHDFVDYRDHPVPAATLK
FT                   QWAGKVGGWEKLVNRTSMTWRALSDERKAARSDAEWTALIAEYPALVRRPVTVTPDGEV
FT                   TVGFSEKRYGERFA"
FT   CDS             61681..62397
FT                   /transl_table=11
FT                   /locus_tag="BPP1696"
FT                   /product="putative methypurine-DNA glycosylase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2343"
FT                   /db_xref="GOA:Q7W9Q9"
FT                   /db_xref="HSSP:1F6O"
FT                   /db_xref="InterPro:IPR003180"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9Q9"
FT                   /protein_id="CAE36997.1"
FT                   /translation="MPAPARTARPQPGPALPAAFFNRDAQQLARDLLGKVVRHRVDGLW
FT                   LSARIIETEAYYLAEKGSHASLGYTHKRRALFMDGGVVYMYYARGGDSLNFSAAGPGNA
FT                   VLIKSGHPWVDEVSGPRALACMQRLNPDAQGQPRPPARLCAGQTLLCRALGLKVPQWDA
FT                   KAFDPRRFFVEDVGVRLDRLVRTTRLGIPAGRDEHLPYRYVDPAYAAFCTRNPLRRGQQ
FT                   AGRDFDWVDPDGALYV"
FT   misc_feature    61729..62304
FT                   /note="HMMPfam hit to PF02245, Methylpurine-DNA glycosylase
FT                   (MPG), score 9.3e-13"
FT   CDS             complement(62405..63112)
FT                   /transl_table=11
FT                   /locus_tag="BPP1697"
FT                   /product="hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2342"
FT                   /db_xref="InterPro:IPR019647"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9Q8"
FT                   /protein_id="CAE36998.1"
FT                   /translation="MPWPDNTADHNTHHAPLPGSGYAAMFGPLDLSQARLLAQGGDRYV
FT                   FQHPHEPALLVKVMDMEARAVYLEARPFKRWYKQFQRESAYRVYLNEITEYVTTSTSAS
FT                   GVWQVPLARIVGLAQTSLGLGLLAEKITDAAGNMAPTVSDLVKRGEFDTALAQRLDRFF
FT                   EDLADAHIVIHDISASNIACGRNAEGREGLYLIDGFGVLPLIPTYAWSRRLNRKRIMRK
FT                   YAELRARMPAPAP"
FT   CDS             63190..64605
FT                   /transl_table=11
FT                   /locus_tag="BPP1698"
FT                   /product="conserved hypothetical lipoprotein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2341"
FT                   /db_xref="InterPro:IPR003798"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9Q7"
FT                   /protein_id="CAE36999.1"
FT                   /translation="MLKQCPGVSRPLFLQSWFVEIGLESYLPWITVAAAVFALLACLLA
FT                   LRGRGGDARLQALLDGLERVDRGLRADLAESQRGLRAELAESMRALRAEMAQSQEELRA
FT                   TLGRDARAARAEHGESLARFASQFGERLQGLVELNDRRMQDVRQVVDQRLQALQADNGA
FT                   RLEEMRRTVDEKLHATLEQRLGESFRMVSDRLEAVHKGLGEMQTLAAGVGDLKRVLTNV
FT                   KSRGTWGEVQLARLMEDAMTPEQYARNVKPVPGSDAVVEFAIRLPGKDEGGGPVWLPID
FT                   AKFPKEEYERLMDAQDAAEQEAARAAGAALAKAVETQARLIASKYVAPPHTTDFAIMFL
FT                   PTEGLYAEVLRRPGLLDKLHGLRVNVAGPANLAALLNSLQMGFRTLAIERRSFEVWQVL
FT                   RAVKTEFAKFGESLATVKKILDTASNRIGQTEVRTRAMLRNLRTVEALPEAEAARLLGD
FT                   EPDTLGADQGSPS"
FT   misc_feature    63265..63333
FT                   /note="1 probable transmembrane helix predicted for BPP1698
FT                   by TMHMM2.0 at aa 26-48"
FT   misc_feature    63283..63315
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             64685..66343
FT                   /transl_table=11
FT                   /locus_tag="BPP1699"
FT                   /product="putative acyl-CoA dehydrogenase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2340"
FT                   /db_xref="GOA:Q7W9Q6"
FT                   /db_xref="InterPro:IPR006091"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9Q6"
FT                   /protein_id="CAE37000.1"
FT                   /translation="MQPFLTHQVTNQVAPLEDYSLYETDPVLQQAVRREGAAAFESELR
FT                   EHGAWLGRAQTLEAAAEANRNSPRLLAYDPTGHRQDKVAFHPAWNALMTGIVARGLHSR
FT                   AWAQPVPGAHVARAAAYLMQGQVEAGTLCPTTMTHAAVPLLAREPAGVIDYGRDWLDVL
FT                   YSREFDASDAPIGRKRGALIGMGLTEKQGGSDLRSVATRAEPVGAPGRGQAYLLTGHKW
FT                   FLSVPHADAHLVLARTDEGLGCFFVPRWVPDGPRNAVRLRRLKDKLGNRSNASAEVEFE
FT                   QAWGAMLGEPGRGTAVLLEMAATTRLDCVLGSAALLRQAVAQALHHAAQRQAFGTALLA
FT                   QPLMRVLLADLALESEAATVLALRLARAVDERADPVARALVRVGTPAAKLWVCKRAIAA
FT                   LGECMEVLGGNGYVEEAPLARLYREAPVNSIWEGSGNVMALDVLRGLAREAEALPGLRD
FT                   ELDRARGVVPAYDQALDDWLALVAQPDSVPQALARRVAAGLATLWQAALLIRHAPAPVG
FT                   AAFAATRLHAPAGIVGAAPIDDPAPILARAWPGIC"
FT   misc_feature    65240..65278
FT                   /note="PS00072 Acyl-CoA dehydrogenases signature 1."
FT   misc_feature    65240..65548
FT                   /note="HMMPfam hit to PF02770, Acyl-CoA dehydrogenase,
FT                   middle domain, score 4.2e-27"
FT   misc_feature    65558..66025
FT                   /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase,
FT                   C-terminal domain, score 7e-41"
FT   misc_feature    65897..65956
FT                   /note="PS00073 Acyl-CoA dehydrogenases signature 2."
FT   CDS             66397..67077
FT                   /transl_table=11
FT                   /gene="rpiA"
FT                   /locus_tag="BPP1700"
FT                   /product="ribose 5-phosphate isomerase a"
FT                   /EC_number="5.3.1.6"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2339"
FT                   /db_xref="GOA:Q7W9Q5"
FT                   /db_xref="InterPro:IPR004788"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9Q5"
FT                   /protein_id="CAE37001.1"
FT                   /translation="MLTQQELKQQAADAALELVEQVAGPDVIIGVGTGSTADLFIDGLA
FT                   RFKGRLRGTVASSERSAARLAGHGLAVLDLNDVQSMPIYVDGADEIDPNLHMIKGGGGA
FT                   LTREKIVASVARRYICIADESKLVERLGRFPLPVEVIPMARNAVARGLSRLGGQPALRE
FT                   GFVTDNGNIILDVAGLSIADAPGLEKTINDIPGVVTCGLFALAGADVALLATQDGIRRL
FT                   ERRG"
FT   CDS             67205..68011
FT                   /transl_table=11
FT                   /locus_tag="BPP1701"
FT                   /product="putative transport protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2338"
FT                   /db_xref="InterPro:IPR008170"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9Q4"
FT                   /protein_id="CAE37002.1"
FT                   /translation="MRPTTQGVRMTEHTNKQFDADLQHVRSQFLQMGGIVEAMIHEAVE
FT                   AIPAGDMSMVEKVREREKEVNRHEVEIDERISLILARHQPTAIDLRTLLAVSKMLTDME
FT                   RSGDEAEKIATAVRRMYENDQRHIPLIELRHMAVNVGNMLRQALDAFARLDPILAAQVV
FT                   RSDKEVDKEWKAALRNLITYMMEDPRTISRAIDMIFIARALERIGDHAKNMAERVIYMV
FT                   KGADVRHTGVKNTERLARGEEAIEKADKAEKAGNAETPASTPEVPQ"
FT   misc_feature    67289..67555
FT                   /note="HMMPfam hit to PF01895, PhoU family, score 6.9e-20"
FT   misc_feature    67601..67858
FT                   /note="HMMPfam hit to PF01895, PhoU family, score 2.5e-25"
FT   CDS             complement(68025..69908)
FT                   /transl_table=11
FT                   /locus_tag="BPP1702"
FT                   /product="putative phospholipase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2337"
FT                   /db_xref="GOA:Q7W9Q3"
FT                   /db_xref="InterPro:IPR008475"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9Q3"
FT                   /protein_id="CAE37003.1"
FT                   /translation="MPAATDPDIAALVARAAAVAPERRSGTLRDLDHIVILMQENRGFD
FT                   HYYGALPGARGRADPHRAPTPDGDVFVQAHAGQRLAPYPLAPALPPGQPLGHLTPHTWD
FT                   DAQRAWNDGRMDQWLAAKGRLGMGYYRPEELPLQTALARAFTLCEAYHCSMHAGTNPNR
FT                   LFLWTGTNDPHGQAGGPALVNTHDRPGPAHEGYAWTTYPERLQAAGVDWAIYQDMADNY
FT                   HDNPLAGFRQYRAELAGGAARAPLRERALSTRTLAALAEDAANGRLPQVAWIIAPAADS
FT                   EHPEVSSPAQGAAFSARVLDILTRDPALWRRCALLLTYDENDCFFDHMPPPAPPGAAGG
FT                   GSTADTAGEYHQARGGPSAGTPDDPRALHGRAYGLGPRVPMLVVSPFSRGGWLDARVYD
FT                   HTSVIRLLESRFGVAEPNISPWRRAVCGDLSHAFDFTGAQDQAGAPGPRSRPSPYACHV
FT                   EAWAADGRQRVRMANPGHATLVLHVYDCLRLAQGPRRYTIEPGRQWEDSWPDAGADLAC
FT                   DLWILGPDGFHRHIRRHGAAAPLAAAWRDQPPALLLENRGAQALQARIESAYGEAPALL
FT                   RLAPGEQAAWPYEPSASRGWYDLTASAAGQSLRLAGRTRAAGPGRPDPRLG"
FT   CDS             complement(69962..70234)
FT                   /transl_table=11
FT                   /locus_tag="BPP1703"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2336"
FT                   /db_xref="GOA:Q7W9Q2"
FT                   /db_xref="InterPro:IPR007457"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9Q2"
FT                   /protein_id="CAE37004.1"
FT                   /translation="MSRIVNCVKLKREAEGLDFPPYPGELGTRIWQQISKEAWEEWKQI
FT                   QTRLVNENRLNLADARARKYLQQQMERFLFEDGTVEAQGYVPPSA"
FT   CDS             complement(70308..71711)
FT                   /transl_table=11
FT                   /gene="argA"
FT                   /locus_tag="BPP1704"
FT                   /product="amino-acid acetyltransferase"
FT                   /EC_number="2.3.1.1"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2335"
FT                   /db_xref="GOA:Q7W9Q1"
FT                   /db_xref="InterPro:IPR016181"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9Q1"
FT                   /protein_id="CAE37005.1"
FT                   /translation="MQDRCPHQDHRSIPTIMPDLEPDTVSALEAPEFAPAQFVRWFREV
FT                   APYVHAFRGKTFVVAFGGELVQAGALNVLVQDLSLLSALGIHLVLVHGSRPQVNEQLRL
FT                   KGYTQQFGRGLAPTDPAALECAKEAAGEIRLDIEAAFSQGLPNTPMSHSHIRVLSGNFV
FT                   TARPTGVVDGIDYKHTGQVRKIDVDALKFAIEQGSVVLLSPLGFSPTGDAFNLAMEDLA
FT                   TSVAVALRAEKLIFLSGEPGVLDGNGAVDTELARVDADALLARGELDEDTTYFLQHASL
FT                   AVKRGVARAHLVPYALDGSVLLEIFTHDGVGTMVVEDTLDDLRAATLDDVGAILSLIEP
FT                   LETDGTLVPRPRSAIERDVERFTVLEHDGVIYGCAALYPFPEDQMAEMACLIVHPEWQG
FT                   SGEGEILLRHMESRARASGARRLFVLTTRTSHWFMKRGFVRGGVADLPRDKQNNYNRSR
FT                   NSLVFIKKL"
FT   misc_feature    complement(70395..70625)
FT                   /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT)
FT                   family, score 4e-11"
FT   misc_feature    complement(70830..71549)
FT                   /note="HMMPfam hit to PF00696, Amino acid kinase family,
FT                   score 2.7e-10"
FT   CDS             71815..75726
FT                   /transl_table=11
FT                   /locus_tag="BPP1705"
FT                   /product="putative ATP-dependent helicase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2334"
FT                   /db_xref="GOA:Q7W9Q0"
FT                   /db_xref="InterPro:IPR011709"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9Q0"
FT                   /protein_id="CAE37006.1"
FT                   /translation="MPGSTDISSMPEASRPPERAAAARSEPRPERPIPAISYPEDLPVS
FT                   ARRQEIARAIAAHQVVIVSGETGSGKTTQLPKICLELGRGRRKMIGHTQPRRLAATSVA
FT                   KRIAEELRTPMGEVVGYQVRFNDRTGPNASIKLMTDGILLAESQRDPLLRRYDTIIIDE
FT                   AHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDAERFARHFAAGPERPAPVIEVSGR
FT                   LYPVEVRYRPVQPPMSDEAAAAPAKGGRERSAGDEERDLIDAIVDAVDECARHGPGDVL
FT                   VFLPGEREIRESAEALRKRHPVGTEVLPLYARLSQAEQEQIFHPSGNARRVVLATNVAE
FT                   TSLTVPGIRFVVDSGLARVKRYSWRNKVEQLRIEPVSRASANQRAGRCGRIGPGLCIRL
FT                   YDETDFNARAPFTDPEVLRSSLASVILRMKSLKLDDIEQFPFVEAPPGRAVADGYHLLQ
FT                   ELGAIELAGDGEAAEAGGGGAAFRLTRTGQELAKLPVDPRIGRMILAAREQQCLAEMLI
FT                   IAAALSVQDPRDRPMAEREAAESAHAKFADDKSEFLSFLKLWRWYGEQVQHKASQRKLV
FT                   ALLRQNFLSPVRLREWHDVHTQLAALVGEQGWRLNQSEATYEQLHMALLSGLLGNIGFK
FT                   GEEGGQYHGAREIRFHIHPGSRLVKKAGRWIVAAELVETTRLYARCVARIEPVWLERAA
FT                   AHLLRRNWSDPRWEKKAGQVVANERATLYGLLVYNGRRVHYGRINPQHARELFIRQALV
FT                   PGEIDTRLPFVAHNRKLIAGIEKLEHQTRRPDILVDDELIYAFYDRQLPADISQTASLE
FT                   KWVNGLDKAAAARLLLTRDELMRHEAAGVTTDVFPKKVEWQGVAMPLDYHFEPGSPRDG
FT                   VTLSVPLFALNQLDAQRCEWLVPGMLKEKAHLLLKSLPQKLRRHCVPLPDYAAGFYERW
FT                   YERQADPQQGLVDALIADMWDQVQVRPAPGDFKLETLPAHLFMNFKVVDEHGRMLAAGR
FT                   NLAQLKAELGKQAQATFQQLAARDSDVAQALAHENLTSWSFGPLPEIMEIKRGGQSVIG
FT                   YPALVDRGAHCDLDVFDDPDEARRHHRAGLLRLFRLALREQVKFLEKNLADLTKMSMLY
FT                   MALGTQEELRDQIIDCALAQACLAEPWPVNEQQFEARRQEGKGRLGLLAQEVARMAHAI
FT                   LAEYGALQRKLPQARPHAAAYADLQQQLGVLMPKWFVRDTPYAQLAHYPRYLKAAVARI
FT                   DKLRADPARDARLMGEMAPILTQYQRARSALKGAPDPRLDEFRWLLEELRVALFAQELR
FT                   TPMPVSVKRLMKAWESLRR"
FT   misc_feature    72007..72030
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    72724..72990
FT                   /note="HMMPfam hit to PF00271, Helicase conserved
FT                   C-terminal domain, score 8.3e-16"
FT   CDS             complement(75859..76785)
FT                   /transl_table=11
FT                   /locus_tag="BPP1706"
FT                   /product="putative dioxygenase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2333"
FT                   /db_xref="GOA:Q7W9P9"
FT                   /db_xref="InterPro:IPR007803"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9P9"
FT                   /protein_id="CAE37007.1"
FT                   /translation="MPQRRPLRTMKWLIPGLWLASILFAHFRGRVRLSLSRQMLDHSVL
FT                   LAPVNAFMVLTSRVPTTPYLTTSEIPELKVLDDNWETIRDEALKMAELRRIKAAERHDD
FT                   IGFNSFFKYGWKRFYLKWYDARHPSAEELCPKTVAILKSLPKVKAAMFAELPPGGKLNP
FT                   HRDPFSGSLRYHLGLATPNDDRCYIAVDGESYSWRDGESVVFDETYVHEAHNKSEGNRI
FT                   ILFCDVERPLKWRWAEAFNRWFGRVVMSAASSPNDAGDQTGAINKLTHAHWVIDQKRKQ
FT                   FKAWNRTVYKATKWGLIALVAIGFLAL"
FT   misc_feature    complement(76699..76749)
FT                   /note="1 probable transmembrane helix predicted for BPP1706
FT                   by TMHMM2.0 at aa 12-29"
FT   CDS             76897..80388
FT                   /transl_table=11
FT                   /gene="dnaE"
FT                   /gene_synonym="polC"
FT                   /locus_tag="BPP1707"
FT                   /product="DNA polymerase III alpha subunit"
FT                   /EC_number="2.7.7.7"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2332"
FT                   /db_xref="GOA:Q7W9P8"
FT                   /db_xref="InterPro:IPR004805"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9P8"
FT                   /protein_id="CAE37008.1"
FT                   /translation="MSEAVTNPPPFVHLRVHSEFSVSDGIVRISDLIKRVAKLGQPAVA
FT                   LTDLSNIFGLIKFYKGARGAGVKPVAGSDVWLTNDDDREKPFRLLLLVRNHQGYLNLCE
FT                   LLTRSFLENQYKGRAEVRREWLQGQEGLIVLSGARGGDVGQALEAGNAVTALSLARQWG
FT                   QLFPGSYYIELQRAGFDGDETYTQAAMRLAAEAGLPVVATHPVQFLDRDEFQAHEARVC
FT                   IAEGEILANPRRVRRYTQDQYLLSSEEMARRFADVPSALANTVEIARRCNLTLVLGKPR
FT                   LPNFPTPDGVTLDDYLVQLSEEGLEKRLQFLFPDEAERNAKRDQYYERLRWECKTIIQM
FT                   GFPGYFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNP
FT                   ERVSMPDFDIDFCQDNRERVIDYVKMKYGREAVSQIATFGTLGAKAVVRDAGRVLDMPY
FT                   LFCDALSKLIPFNPADPWTLERTLKDEPAFKDRYEQEEEVRALVDLARPLEGLTRSIGM
FT                   HAGGVLIAPGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWA
FT                   VRFVRQFNADKRDFDVMALSLDDQAAYKVLCDANTTAVFQLESRGMKELLKKLRPSTFE
FT                   DIIAMLALYRPGPLESGMVDDFVNRKHGRAAVDYFHPDLEGTLRSTYGVIVYQEQVMLI
FT                   SQIIGGYSLGGADLLRRAMGKKKPEEMAKHRELFEQGAREKGHDPDLAVKLFDLMEKFA
FT                   GYGFNKSHSAAYALIAYQTAWLKAYHPTEFLAATLSSDMDDTDKVQIFVRDAQDNGVEV
FT                   LPPDVNASGYRFEPVADKHTEQGKPPRTMRYGLGAVKGTGQGAVEEILRARQEGGPFAN
FT                   LFDFCRRVSKHAVNRRTIEALIKAGAFDTIEPNRAAMLASVGTAMEAAEQAARSANQSS
FT                   LFGDDSGDVVAGELTKVAPWNLHTTLTEEKTALGYYFSGHLFDAWRDEVRRIVPMQLAR
FT                   LEPQRDLQWMCGVLAGVRTMMTRRGKMVFAVLDDGTAQIEISVFNELYEKHRGRLREDQ
FT                   LLVVQGKVSNDEYSGGMRIVAEQLYDLQLAREARAKSLRIRLNGQADAARLRQLLNPFR
FT                   AEPENGVPGVPVDVVYRRNNFLCTVRLGEDWRVRMADTLLENLNDWAKPDGVEVTY"
FT   misc_feature    76930..77127
FT                   /note="HMMPfam hit to PF02231, PHP domain N-terminal
FT                   region, score 2.2e-19"
FT   misc_feature    77149..77538
FT                   /note="HMMPfam hit to PF02811, PHP domain C-terminal
FT                   region, score 7.8e-11"
FT   misc_feature    79885..80121
FT                   /note="HMMPfam hit to PF01336, OB-fold nucleic acid binding
FT                   domain, score 2.2e-12"
FT   CDS             80388..81491
FT                   /transl_table=11
FT                   /locus_tag="BPP1708"
FT                   /product="putative transferase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2331"
FT                   /db_xref="GOA:Q7W9P7"
FT                   /db_xref="InterPro:IPR001296"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9P7"
FT                   /protein_id="CAE37009.1"
FT                   /translation="MRPLRIVHSEAATSFGGQEGRIFKEMTAMRERGHHMEAICQPQAQ
FT                   LARRLAEAGFTVHTLEMDGPRNYLRGVLSLRRLLRQGRYDVLNTHSRRDTVIAAAAGRL
FT                   AGTPLIVRTRHLSNKVGSLWSYTGLPHRVTTVSDHVRQHLIERGVPAGHIATVYSPIVL
FT                   PPPIEHSTLRGELGLAADDIVVGCVAVMRATKGHRELIDAMRPLMAERANLHLVFVGGG
FT                   SPVFEQTQAYVAELGLQARIHLMGTRNDVPNLLAGFDLFALATRQEASGTVYVEAEACG
FT                   LPVVGTDVGGVSEMMRDGETGILVPVDDPAALGAALRRLIDDRALRRRMGEAGRRMVRD
FT                   EKVFAPERLAERTEAIYRQWLAERGHA"
FT   misc_feature    80889..81398
FT                   /note="HMMPfam hit to PF00534, Glycosyl transferases group
FT                   1, score 4e-41"
FT   CDS             81484..82335
FT                   /transl_table=11
FT                   /locus_tag="BPP1709"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2330"
FT                   /db_xref="GOA:Q7W9P6"
FT                   /db_xref="InterPro:IPR002509"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9P6"
FT                   /protein_id="CAE37010.1"
FT                   /translation="MRNAPNVPVLMYHHVTPAGGMIAATPEVFERQIAALARAGYRSLG
FT                   TAEFAAYLDGAPVPEKSVLITFDDGYLNNWVYAHPILQRHGMKAVLFLITGLLGDGPAR
FT                   PCAGQDGPLPPAPDHDESKRLIAAGRADEVMLRWSEVQAMLAAGTFEVHSHTHTHTRWD
FT                   KQCGPDVAAKRAHIAQELADSRRALQARLGEVSDHLCWPQGYFDADYVQAARDAGFRHL
FT                   YTTDALGQNVPGGDPAHIYRFAVRNRAGGWLNRRIWLARHPWIGPRYHAWKAWKKKLRR
FT                   RA"
FT   CDS             82332..83084
FT                   /transl_table=11
FT                   /locus_tag="BPP1710"
FT                   /product="putative transferase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2329"
FT                   /db_xref="GOA:Q7W9P5"
FT                   /db_xref="InterPro:IPR001969"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9P5"
FT                   /protein_id="CAE37011.1"
FT                   /translation="MTLSVIIITKNEAANILACLESVAFADEFIVVDSGSTDNTVELAR
FT                   DFGARVEVTPDWPGFGPQKNRALDLATGDWVLSIDADERVTPELASEIQAAMAGATADC
FT                   YEIARLSDFCGRFIRHSGWWPDYVLRLFRRGSARFTDAAVHERVVPAQGQPARLRGHFL
FT                   HYPYNNFDALIAKVNRYSSDAAAMMHARGKRATVFSALGHGFWTFVRIYLIRRGFLDGC
FT                   HGLVLAVTAAAGSFFRYAKLMFLSEPRK"
FT   misc_feature    82341..82790
FT                   /note="HMMPfam hit to PF00535, Glycosyl transferase, score
FT                   5.5e-23"
FT   misc_feature    join(82914..82973,83001..83069)
FT                   /note="2 probable transmembrane helices predicted for
FT                   BPP1710 by TMHMM2.0 at aa 195-214 and 224-246"
FT   CDS             83081..84193
FT                   /transl_table=11
FT                   /locus_tag="BPP1711"
FT                   /product="putative transferase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2328"
FT                   /db_xref="GOA:Q7W9P4"
FT                   /db_xref="InterPro:IPR001296"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9P4"
FT                   /protein_id="CAE37012.1"
FT                   /translation="MKILYTNFHGRNGGGHVTYVINLARALAPGHALTVAVPGTSRLYR
FT                   YAREIPGVEVVDMQYTTRLSSWFHDRAALRRLIAEGGYDIIHCNGSADHKQVMLATLGL
FT                   RRRPRIVFTKHNDHPLGSLGNRLRATLATDHSIAVSAYVHGLLADSPYSRHPITTVRHG
FT                   IDTDYYAPPDAATAAQWRERYFGPDWRGRLLLGSAGGTDYDKGWLDLVAAAGSLPAPLR
FT                   ERVRILVAGDPPNQAKLDRVREHGMQDQMVFPGLLDDVREALGACDAGYVLSYREALSF
FT                   ACREMMALGRPVLASNAGGLPENITAGRDGWVVPVRDVPAIAAVLREMLEQPERLAEMG
FT                   CQARATAEREFGLRDFAQATLAVYQRTLSA"
FT   misc_feature    83126..83152
FT                   /note="PS00729 AP endonucleases family 2 signature 1."
FT   misc_feature    83612..84118
FT                   /note="HMMPfam hit to PF00534, Glycosyl transferases group
FT                   1, score 3.5e-21"
FT   CDS             complement(84172..85788)
FT                   /transl_table=11
FT                   /locus_tag="BPP1712"
FT                   /product="putative outer membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2327"
FT                   /db_xref="GOA:Q7W9P3"
FT                   /db_xref="InterPro:IPR000917"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9P3"
FT                   /protein_id="CAE37013.1"
FT                   /translation="MTRFLQAWVPLLVAGIAPIWIQARLHGDSFSPRVYLLGVTLMLAC
FT                   ALLWRRAWTRPAAVLLCTGLAANLGLAQFCYQAYGQRFNFGFAYSILTTNYDETVQLLT
FT                   QHWRSAALTLAVLALLLWVVRRAAHELPTRWLALGAAATALVFFGSWLRYELAMRGAAD
FT                   EYYPSIERTVSRSPMFNMRYFIQASYDQSLLDTAGRHRVTHALTRRDTGIDTYVVVVGE
FT                   SARRANWGLYGYARDTTPRAEAERDRMTLYTQAAAPAPLTIMAVPLTLSAATVDSYDPR
FT                   LFGDNVVALAGDAGFRTYWLSNQARLGRYDTPVTAMANMAHFKTWADAPYDEALLPLLD
FT                   AALAEPGRKVVFLHINGNHDNYCTRYPETATVYQGGAPYEDCYDNSIRYVDALLGAVMD
FT                   RLGERRASLLFYPDHGLERHESVLGTFYHGGVRPSREAFDIPMFIWNSPAAPAPARREY
FT                   DAPYSTEDNYGLILDWLGVATGVDDCKHRPAAPACAGRPVRVIDAKRDVYAYADLAPHP
FT                   DGRRPATPPRVGPRDQALNVR"
FT   misc_feature    complement(84322..85782)
FT                   /note="HMMPfam hit to PF02418, Integral membrane protein of
FT                   unknown function, score 9.6e-45"
FT   misc_feature    complement(join(85333..85383,85420..85470,85549..85614,
FT                   85630..85686,85717..85767))
FT                   /note="5 probable transmembrane helices predicted for
FT                   BPP1712 by TMHMM2.0 at aa 7-24, 34-53, 58-80, 106-123 and
FT                   135-152"
FT   CDS             86153..86878
FT                   /transl_table=11
FT                   /locus_tag="BPP1713"
FT                   /product="putative polysaccharide deacetylase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2326"
FT                   /db_xref="GOA:Q7W9P2"
FT                   /db_xref="InterPro:IPR002509"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9P2"
FT                   /protein_id="CAE37014.1"
FT                   /translation="MPIPILMYHQIGEPAPRGTPYRGLTVHPASFRRQMTWLRRFGYRG
FT                   LSMRDLMPYVRGERSGKVFGITFDDGYRNVHRNAMPVLGELGFTATNYFVAHQLDGGNV
FT                   WDLEKGIPFSALMNAQEMREWHQAGNEVGSHTLDHVHLPRMAADEARRQICQSKDELEQ
FT                   VLGAPVTAFCYPYGDYTDEHRAMAREAGYDNATLTVRGLASAADDPYGLPRVTVSRSTH
FT                   LLRFLQKTLTGYEDRRRRG"
FT   misc_feature    86330..86830
FT                   /note="HMMPfam hit to PF01522, Polysaccharide deacetylase,
FT                   score 5.2e-07"
FT   CDS             86853..88007
FT                   /transl_table=11
FT                   /locus_tag="BPP1714"
FT                   /product="putative transferase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2325"
FT                   /db_xref="GOA:Q7W9P1"
FT                   /db_xref="InterPro:IPR001296"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9P1"
FT                   /protein_id="CAE37015.1"
FT                   /translation="MKTGAAADKRRLRIALLVDRFGNRFGGAEAYGVELMRILARRHDV
FT                   TVVAREYDSDLALPFLPVRVSCRLPSWLRVLYFAWRAARLTRAGFDIVHSHMNGGAGDV
FT                   QVMHVTPVRYNWLCRPGLRRRLTAWTSPRVATYLALEKARVAQRPGKRVVTVSELIVEQ
FT                   MRDAYGVGLPMETIPPGVQLPAPSDPARRAATRVALGWGEDDLVCLLVARNPLRKGLPA
FT                   LLAALAHLPARYRLLVVGADGPARQCVGDSGLADGRVRLVDPTPGVAPYYEAADIYVHP
FT                   TLNDSYGMAPLEAMSHGLPVVVSSADYCGFAQYLADGRDALILRDPRDGAEVARAVAAI
FT                   GDGAPLRAALSAAGLALARAQSWEAVAARYETLYETLLRERAVG"
FT   misc_feature    87423..87923
FT                   /note="HMMPfam hit to PF00534, Glycosyl transferases group
FT                   1, score 1.9e-10"
FT   CDS             complement(88132..88404)
FT                   /transl_table=11
FT                   /locus_tag="BPP1715"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2324"
FT                   /db_xref="InterPro:IPR005358"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9P0"
FT                   /protein_id="CAE37016.1"
FT                   /translation="MSATLSCRPGCGACCIAPSISSPIPGMPQGKPAGSRCVQLDDDMR
FT                   CRIFGHPDRPDVCSSLQPSTELCADDREQAMTWLLKLEELTLPAR"
FT   misc_feature    complement(88147..88392)
FT                   /note="HMMPfam hit to PF03692, Uncharacterised protein
FT                   family (UPF0153), score 3.7e-49"
FT   CDS             complement(88409..89173)
FT                   /transl_table=11
FT                   /locus_tag="BPP1716"
FT                   /product="conserved hypothetical membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2323"
FT                   /db_xref="InterPro:IPR003848"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9N9"
FT                   /protein_id="CAE37017.1"
FT                   /translation="MAISSFLTNLIIPLNLCLTLVVLGLVLGLFRLRKTGAALIAGGLL
FT                   WALAWSLPATSLWLGGALESRYPHLPPDQSPTADAIVVLGGNTANGRANWFLPYDKETA
FT                   VVRVDTATELFQAGRAPKVVLSGGALEGDISEARGMAYRMRQHGVPESALILENASRTT
FT                   YENAALTEDTLRQHGIQKVLLVTSALHMPRAMAAFSKQGVQAIAAPAPPQIVAPADGSL
FT                   SPWLPDQRSFDASRSIIKEYAGLFVYWLRGWV"
FT   misc_feature    complement(88418..89158)
FT                   /note="HMMPfam hit to PF02698, Uncharacterized ACR,
FT                   COG1434, score 7e-40"
FT   misc_feature    complement(join(88991..89056,89078..89143))
FT                   /note="2 probable transmembrane helices predicted for
FT                   BPP1716 by TMHMM2.0 at aa 10-32 and 39-61"
FT   CDS             complement(89186..90151)
FT                   /transl_table=11
FT                   /gene="waaF"
FT                   /locus_tag="BPP1717"
FT                   /product="heptosyltransferase II"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2322"
FT                   /db_xref="GOA:Q7W9N8"
FT                   /db_xref="InterPro:IPR002201"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9N8"
FT                   /protein_id="CAE37018.1"
FT                   /translation="MTTISCIYVRLPNWIGDVCMSLPSLRTLQDSGAPLVVCARPWARD
FT                   LLAGVPKQDFLPMTGKVLRDRATVAAHRRALGGGAATRGLLLPDSLSSAAVFRLAGIPC
FT                   AGYRDDGRSPLLRWPVDKPGASLHAVQSWHYLTRAALQRWGLPAGPVEPGALLDLPLTQ
FT                   AHRDAAGQLLQAQQLAGRPFVLIAPTATGLHKGKVKVWPGFDALTRALQERGQTVVMCP
FT                   PPAEVAEARRNAPSATLLPPLGLGAFAALAQRAALVVCNDSGVSHVAAAVDARQLTLFG
FT                   VTRPGRTGPWSPRAVCLGSETRWPGPEQVMEKSLELLSGA"
FT   misc_feature    complement(89195..89947)
FT                   /note="HMMPfam hit to PF01075, Glycosyltransferase family 9
FT                   (heptosyltransferase), score 2e-91"
FT   CDS             90167..92038
FT                   /transl_table=11
FT                   /locus_tag="BPP1718"
FT                   /product="putative ABC transporter"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2321"
FT                   /db_xref="GOA:Q7W9N7"
FT                   /db_xref="HSSP:1MV5"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9N7"
FT                   /protein_id="CAE37019.1"
FT                   /translation="MLAWRPGRPDGCRAAGGRRYNPGHDCIKASVSLNSAARNAPAGSQ
FT                   PVKAELWKRVYSRVGSYWKGLVLAVLLMAGAAATQPTLAVIMKPLLDDGFSGAKPHYVW
FT                   FLPLAVVGLILLRGICNFFSDYLLAWVANNVLRGIRGEMFERLLGLPDADFKRGDTGRL
FT                   LNRFTIDAGNVTGYATDVITVLVRETLVVIALIGVLLYMSWALTLIILVMLPVSVGIAR
FT                   AFTRRLRRINRETVNMNAELTRVVSEGIDGQRVIKLFDGYDAERRRFDFVNSRLRRFAM
FT                   RSATADAALTPLTQVCISVAVGAVIAVALSQANSGALTVGSFASFMAALAQIFDPIKRL
FT                   TNLAGKMQKMLVAAESVFTLVDQTPEADAGTRALPEPVRGKVEFRAVSHRFPDADRDTV
FT                   SAVSFLVEPGQTVALVGRSGSGKTTLVNMLPRFVLPDGGDILFDDVPIQDLTLRSLRSH
FT                   LSLVSQDVVLFDDTIAANVGYGAGGTVDDARVRDALAAANLLEFVDGLPLGIHTPVGQN
FT                   AARLSGGQRQRLAIARALIKNAPVLILDEATSALDNESERQVQASLERLMRGRTTLVIA
FT                   HRLSTVQNADRIIVLDAGKIVEHGPHSELLAANGLYASLYNMQFRED"
FT   misc_feature    join(90359..90427,90470..90538,90734..90802,91028..91096,
FT                   91115..91168)
FT                   /note="5 probable transmembrane helices predicted for
FT                   BPP1718 by TMHMM2.0 at aa 65-87, 102-124, 190-212, 288-310
FT                   and 317-334"
FT   misc_feature    90362..91177
FT                   /note="HMMPfam hit to PF00664, ABC transporter
FT                   transmembrane region, score 2.9e-41"
FT   misc_feature    91391..91948
FT                   /note="HMMPfam hit to PF00005, ABC transporter, score
FT                   2.1e-57"
FT   misc_feature    91412..91435
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    91727..91771
FT                   /note="PS00211 ABC transporters family signature."
FT   CDS             complement(92011..93510)
FT                   /transl_table=11
FT                   /locus_tag="BPP1719"
FT                   /product="putative inner membrane efflux protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2320"
FT                   /db_xref="InterPro:IPR011701"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9N6"
FT                   /protein_id="CAE37020.1"
FT                   /translation="MRPQNRWLVLAIIASALFLITVDTTVLYAALPRLTHDLHASAAEK
FT                   LWIINAYPLVVTGLLPAMGALSDRWGPRATFTSGLAAFGAASLCVAYAPSATLLIVARG
FT                   LLAIGAALMMPATLAILRHVFTDARERALAIGVWAAIASGGAALGPVVGGVLLEYFWWG
FT                   SVFLINVPVVLALLWPTWRLVPAGRPAAHRPWDLGAAVLIMTALLGLVFGLKELGKPTP
FT                   DYGVAMLAVAVGAVAMTLFARRQRGQAEPMIDVGMFRDAGFSRGVAVALIAMLTLVGVE
FT                   LVLSQRLQLVQGMTPLQAALLLLPVPLAAAAAGPLAGLWLGRAGERRVMGTALALAGLG
FT                   AAGMVVGTEWPLAGQMAVLALLGAGLGGAMTAASTAVMLHAPADRASMAASIEEVAYEL
FT                   GSVLGVTLFGSIMTTVYTRTLVLPADAPAAAQLRDSLDQALAAAETMAPQWAQQVLPMA
FT                   YQAFDHAYAVVAATAAALLAGAALLTQARRRGPQSSRNCML"
FT   misc_feature    complement(join(92062..92118,92248..92313,92377..92442,
FT                   92473..92523,92545..92610,92656..92721,92785..92838,
FT                   92869..92928,92968..93033,93049..93114,93136..93192,
FT                   93208..93273,93313..93378,93424..93489))
FT                   /note="14 probable transmembrane helices predicted for
FT                   BPP1719 by TMHMM2.0 at aa 7-29, 44-66, 79-101, 106-125,
FT                   132-154, 159-181, 194-214, 224-242, 263-285, 300-322,
FT                   329-346, 356-378, 399-421 and 464-483"
FT   misc_feature    complement(93424..93510)
FT                   /note="Signal peptide predicted for BPP1719 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.998) with cleavage site
FT                   probability 0.968 between residues 29 and 30"
FT   CDS             93627..94139
FT                   /transl_table=11
FT                   /locus_tag="BPP1720"
FT                   /product="putative transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2319"
FT                   /db_xref="GOA:Q7W9N5"
FT                   /db_xref="InterPro:IPR012287"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9N5"
FT                   /protein_id="CAE37021.1"
FT                   /translation="MLDAAETIVVRDGAKGLTIDAVAREMGVTKGGIQYCYGSKDAMIE
FT                   ALFERWDKAYETLFQAVLGEDASPRGRVRAHAEATRRADATSNAKAASLLAALIQAPEL
FT                   LGSTRSWYRSRLDGLDVDTEAGRRARLAVLATEGAFLLRFFGLMEMDESEWQAIFRDIR
FT                   AVLVDAP"
FT   misc_feature    93627..93767
FT                   /note="HMMPfam hit to PF00440, Bacterial regulatory
FT                   proteins, tetR family, score 1e-07"
FT   misc_feature    93972..93998
FT                   /note="PS01095 Chitinases family 18 active site."
FT   CDS             94136..95038
FT                   /transl_table=11
FT                   /locus_tag="BPP1721"
FT                   /product="putative dehydratase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2318"
FT                   /db_xref="GOA:Q7W9N4"
FT                   /db_xref="InterPro:IPR001086"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9N4"
FT                   /protein_id="CAE37022.1"
FT                   /translation="MSRRPAGAARGSDAIGIARAVAGPAALTATQSPAMAARTAYLGPA
FT                   GSWTHQACLDLYGADGLVPLSREALFAAYADGKVERACVPVATSVVGLTPYMEDVLALP
FT                   RVVVVAEYPKMLGYSLLARPGTRREDIKEVHAHPVAFEEVRPWLEREMPGARRVPAASG
FT                   GAAAQAVAASATQDKASFGPRVGASVYQLVSLADGIEEGPHNVTRWWVLGRDMPAPTGK
FT                   DKTSLLACIPDARLAPLLADFAQAGVPILTIYERPARKTLDAHRYVVEVAGHVRDDALA
FT                   GLLARQGELRVLGSYPRRY"
FT   misc_feature    94136..94243
FT                   /note="Signal peptide predicted for BPP1721 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.654) with cleavage site
FT                   probability 0.464 between residues 36 and 37"
FT   misc_feature    94250..94786
FT                   /note="HMMPfam hit to PF00800, Prephenate dehydratase,
FT                   score 2.3e-21"
FT   CDS             complement(95072..96535)
FT                   /transl_table=11
FT                   /locus_tag="BPP1722"
FT                   /product="putative ribonuclease"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2317"
FT                   /db_xref="GOA:Q7W9N3"
FT                   /db_xref="InterPro:IPR019307"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9N3"
FT                   /protein_id="CAE37023.1"
FT                   /translation="MTEDILINVTPFETRVALVEQGAVQELHVERSVQRGHVGNIYLGR
FT                   VVRVLPGMQSAFIDIGLERAAFIHIADLRENRSERSQGQTPTPIEKLLFEGQTLMVQVI
FT                   KDPLGTKGARLSTQISIAGRMLVYLPHDPHIGISQKIDSESERTQLRERLQALMPPEEK
FT                   GGFIVRTQAEGATDEEIAADLEYLRKLWASVQAAARSQPAPTALHQDLTLGQRVLRDMV
FT                   GPHTGTILVDSRSTSSALQEWARVYTPSVAERIRHYSGERPLFDTANVDEEIARALSRR
FT                   VDLKSGGYLIVDQTEALTTVDVNTGGFVGGRNFDDTIFKTNLEAAQAIARQLRLRNLGG
FT                   IVILDFIDMEDPDHRETVLAELKKALSRDRTRMTVNGFTQLGLVEMTRKRTRDSLAHQL
FT                   CEPCPMCQSRGNVRTARTVCYEILREILREARQFNPREFRILAAQGVVDLFLEEESQHL
FT                   AMLGDFVGKQISLEVESQYSQEQYDIILI"
FT   misc_feature    complement(96182..96433)
FT                   /note="HMMPfam hit to PF00575, S1 RNA binding domain, score
FT                   2.6e-08"
FT   rRNA            97283..98814
FT                   /note="16S rRNA"
FT   tRNA            98912..98988
FT                   /note="tRNA Ile anticodon GAT, Cove score 93.29"
FT   tRNA            99009..99084
FT                   /note="tRNA Ala anticodon TGC, Cove score 88.49"
FT   rRNA            99407..102288
FT                   /note="23S rRNA"
FT   rRNA            102463..102577
FT                   /note="5S rRNA"
FT   CDS             complement(102706..103107)
FT                   /transl_table=11
FT                   /locus_tag="BPP1723"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2036"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9N2"
FT                   /protein_id="CAE37024.1"
FT                   /translation="MKKPPSSPAACPCGKPRAYPDCCGRWHAGALFLQAPDAESLMRSR
FT                   YSAFVLDQLDYLLQTWHPDTRPSELEPNAADVKWLGLQIKASQQQDDTHATVEFVARLR
FT                   QAGRATRLHELSRFVKEEQRWYYVDGDIR"
FT   CDS             complement(103221..103493)
FT                   /transl_table=11
FT                   /locus_tag="BPP1724"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2037"
FT                   /db_xref="InterPro:IPR016181"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9N1"
FT                   /protein_id="CAE37025.1"
FT                   /translation="MSDIAHRETQSRFETTVDGQRCELDYVLRDHIMTIVHTGVPAPVG
FT                   GRGIAAELTRAALDTARQRGWKVVPQCSYAAVYLKRHPEYQDLQA"
FT   CDS             complement(103490..104491)
FT                   /transl_table=11
FT                   /locus_tag="BPP1725"
FT                   /product="putative hydroxlacyl-CoA dehydrogenase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2038"
FT                   /db_xref="GOA:Q7W9N0"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9N0"
FT                   /protein_id="CAE37026.1"
FT                   /translation="MRDARLCPEPDMNPPEHVVSPPIARVAVVGAGTIGASWAALFAAR
FT                   GLRVTVTDPAPGAAESLRGRIADIWPALAAAGAIQDGADPGAVRFDADLQEALQDADFV
FT                   QESAPERPDFKADLFTRMDAALPPHAIIASSSSGLPMSALQAGCRHPERCVIGHPFNPP
FT                   HLIPLVEVVAGRQTAPAAIERAMAFYRSLGKYPIRIDKEIPGHVANRLQAALWREAIHL
FT                   VAEGVASVADIDAAVTQGPGLRWALYGPHMTFHLGGGEGGLAHFLDHLRGPVQTWWDDL
FT                   GKPELTPALQRKLIQGVAAEAGQRSIAELSATRDAQLTAILAILRQQGSPHP"
FT   misc_feature    complement(103568..103879)
FT                   /note="HMMPfam hit to PF00725, 3-hydroxyacyl-CoA
FT                   dehydrogenase, C-terminal domain, score 0.0063"
FT   misc_feature    complement(103883..104434)
FT                   /note="HMMPfam hit to PF02737, 3-hydroxyacyl-CoA
FT                   dehydrogenase, NAD binding domain, score 1.4e-37"
FT   CDS             104640..106034
FT                   /transl_table=11
FT                   /locus_tag="BPP1726"
FT                   /product="putative amidase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2039"
FT                   /db_xref="GOA:Q7W9M9"
FT                   /db_xref="InterPro:IPR000120"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9M9"
FT                   /protein_id="CAE37027.1"
FT                   /translation="MSQLWRMSASDLAQAIRAREVSARAAAEAALRRLDEVNPRLNAVV
FT                   DWRPDEVLAQADEIDAALARGDDPGPLAGVPVTVKINIDQAGFATSNGVALQKDVIAQA
FT                   NSPVVDNLRRAGAVILGRTNAPAFSLRWFTSNLLHGRTLNPRNAALTPGGSSGGAASAV
FT                   AAGIGQLAHGTDIAGSIRYPAYACGVHGLRPSLGRVAAYNAALPERSLGGQITAVSGPL
FT                   ARTVADLRLGLAAMAARDARDPWWMPVPLEGPPAPRRAALCVSPDGLETQPAVCAALYE
FT                   AAARLRDAGWQVEETCAIPPLQEAADLQIRMWLADGYEALLRAAQQEGDPGALVALRGQ
FT                   QEAARALDLPGYTATLTRRATLTRLWQLFFEDYPVLLLPVSAEPPFADDLDLQGADAYR
FT                   RVWRAQLTQVGLPFMGLPGLALAMPGVGAAPLGVQVVAARFREDLCLAAGADIEARGAP
FT                   VTLAGP"
FT   misc_feature    104712..105977
FT                   /note="HMMPfam hit to PF01425, Amidase, score 4.7e-65"
FT   misc_feature    105096..105191
FT                   /note="PS00571 Amidases signature."
FT   CDS             complement(106057..106452)
FT                   /transl_table=11
FT                   /locus_tag="BPP1727"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9M8"
FT                   /protein_id="CAE37028.1"
FT                   /translation="MMQAGMYSQTVTFLFSLFVLCFITCTISGLVLFLFKARRANEELR
FT                   HPLLQHRPFKQYPFAIQASIMLDYFLRLAFPRTKWWLIGHANKQLAHVDPKRVPLDVKW
FT                   PIIGFWGACWLGLLAMISLWAMLLLGM"
FT   misc_feature    complement(join(106069..106134,106348..106413))
FT                   /note="2 probable transmembrane helices predicted for
FT                   BPP1727 by TMHMM2.0 at aa 13-35 and 106-128"
FT   CDS             complement(106449..107708)
FT                   /transl_table=11
FT                   /gene="proA"
FT                   /locus_tag="BPP1728"
FT                   /product="putative gamma-glutamyl phosphate reductase"
FT                   /EC_number="1.2.1.41"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2041"
FT                   /db_xref="GOA:Q7W9M7"
FT                   /db_xref="InterPro:IPR012134"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9M7"
FT                   /protein_id="CAE37029.1"
FT                   /translation="MSSIETYMQSVGEQTRTASRAMMRATGAAKNQALLAMAEAILAQR
FT                   AELQAANAKDVAAARANGLEAALLDRLTLSDRSIALMAEGLRQIAALPDPVGSITATSV
FT                   RPNGMRVAQMRVPLGVIGIIYESRPNVTIDAAALCLKSGNATILRGGSEALHSNVALGR
FT                   IVQAGLQAAGLPTAAVQVIDTTDRAAVGKLVTMTEHVDVIVPRGGKGLISRLAQEARVP
FT                   LIKHLDGNCHVYVDAAADLAKAHDIAFNAKTYRYGVCGAMETLLVHADVAQRLLPVLGQ
FT                   ALHEHGVELRGCARALQWLPEGKPADDADWATEYLGPILAVRVVDTIDEAMDHIARWGS
FT                   GHTDAIVTENLSAAQRFQREVDSSSVYVNLPTCFADGFEYGLGAEIGISTNRLHARGPV
FT                   GLEGLTTLKWVLNGEGQVRG"
FT   misc_feature    complement(106467..107708)
FT                   /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase
FT                   family, score 1.3e-06"
FT   CDS             complement(107830..108885)
FT                   /transl_table=11
FT                   /gene="holA"
FT                   /locus_tag="BPP1729"
FT                   /product="putative DNA polymerase III, delta subunit"
FT                   /EC_number="2.7.7.7"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2042"
FT                   /db_xref="GOA:Q7W9M6"
FT                   /db_xref="HSSP:1JQJ"
FT                   /db_xref="InterPro:IPR005790"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9M6"
FT                   /protein_id="CAE37030.1"
FT                   /translation="MAAPLDSDALASHLARAGGRLAPLYTVSGDEPLLVTEAADAIRAA
FT                   ARAAGYTERTSMVMDARSDWSAVAAATQSVSLFGDRRLLELKIPTGKPGKSGGEMLARL
FT                   ADQARDQADADTLVVVALPRLDKATRESKWAQALARGGVMADIANVERGRLPAWIGMRL
FT                   GRQNQRADTATLQWMADKVEGNLLAAHQEIQKLGLLYPEGQLAAEDVERAVLNVARYDV
FT                   FGLRDAMLAGDTARTVRMLDGLRAEGEALPLVLWAVGEEIRLLARVAQARQQGQDAGAL
FT                   MRRLRIFGAHERLALQALGRVAPGAWPAAVQHAHEVDRLIKGLSVPGRLADPWEEMTRL
FT                   ALRVAAAGARP"
FT   CDS             complement(108888..109547)
FT                   /transl_table=11
FT                   /locus_tag="BPP1730"
FT                   /product="putative lipoprotein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2043"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9M5"
FT                   /protein_id="CAE37031.1"
FT                   /translation="MNFAGHFLHFPRLTWPRGIALAMLMLLAGCGFTMRGVTPLPFDTL
FT                   YVGIPDNTRFGADVRRALRAASPNTRQVPTSKDAQAILQQVNTDRTLREVSLNAQGRVE
FT                   EYELGIDYTFRLIDAKGNALVPDTTMSIYREMPYDDQVVQAKQGQIDALYQSMEKELVN
FT                   RLLRRLTAPDVHEAAARAAAGTLDPDAPVYDPNQATPASQPSPWNTPNAYPGMDTP"
FT   misc_feature    complement(109443..109508)
FT                   /note="1 probable transmembrane helix predicted for BPP1730
FT                   by TMHMM2.0 at aa 13-35"
FT   misc_feature    complement(109443..109547)
FT                   /note="Signal peptide predicted for BPP1730 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.804) with cleavage site
FT                   probability 0.756 between residues 35 and 36"
FT   misc_feature    complement(109458..109490)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(109563..112220)
FT                   /transl_table=11
FT                   /gene="leuS"
FT                   /locus_tag="BPP1731"
FT                   /product="leucyl-tRNA synthetase"
FT                   /EC_number="6.1.1.4"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2044"
FT                   /db_xref="GOA:Q7W9M4"
FT                   /db_xref="InterPro:IPR013155"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9M4"
FT                   /protein_id="CAE37032.1"
FT                   /translation="MQERYQPNSVEAAAQQTWQARDAYLVHEHAKNPDGSEKPKFYACS
FT                   MLPYPSGKLHMGHVRNYTINDMMARQLRMRGYNVLMPMGWDAFGMPAENAAIKSKVPPA
FT                   KWTYDNIAYMKKQMKAMGLAIDWSREMCACDPKYYKWNQWLFLKMLEKGIAYRKTQVVN
FT                   WDPVDQTVLANEQVIDGRGWRSGAPVEKREIPGYYLRITDYAEELLDQVSTNLPGWPER
FT                   VRLMQENWIGKSEGLRFAFPHRIAGADGKLIQDGKLYVFTTRADTIMGVTFCAVAPEHP
FT                   LATHAAQSNPALAAFVEQCKLGGTTEAEMATREKEGMPTGLTVTHPLTGAEIDVWVGNY
FT                   VLMTYGDGAVMGVPAHDERDFAFARKYGLPIRQVVALEGKTYSTDAWQEWYGDKQAGRT
FT                   VNSGKYDGLAYQAAVDTIAADLAAQGLGEKQTTWRLRDWGISRQRYWGTPIPIIHCADC
FT                   GPVPVPEQDLPVVLPDDLIPDGSGNPLAKNEAFLSCSCPRCGKPARRETDTMDTFVDSS
FT                   WYFMRYTSPDNDQAMVDARNDYWMPMDQYIGGIEHAVLHLLYARFWTKVMRDLSLLNFD
FT                   EPFTKLLCQGMVLNHIYSRKTPQGGIEYFWPEEVDNVYDAKGAIVGAKLQRDGSEVNYG
FT                   GVGTMSKSKNNGVDPQSLIDTLGADTARLFVMFASPPEQTLEWSDSGVEGANRFLRRLW
FT                   ALGYAQREAVGRGLATGADWAQAPAPVKELRREVYGLLKQADYDYQRIQYNTVVSACMK
FT                   MLNAIDDAPLPEGPAADAARAETLGLLLRVLYPVVPHITWHLWQDLGYAEHLGDLLDAP
FT                   WPHVDEAALVADEIELMLQVNGKLRGSIRVAAKAPKEDIERIAAAQEEVARFLEGRPPK
FT                   RVIVVPGKLVNVVG"
FT   misc_feature    complement(110184..112184)
FT                   /note="HMMPfam hit to PF00133, tRNA synthetases class I (I,
FT                   L, M and V), score 5.8e-139"
FT   misc_feature    complement(112044..112079)
FT                   /note="PS00178 Aminoacyl-transfer RNA synthetases class-I
FT                   signature."
FT   CDS             complement(112298..113455)
FT                   /transl_table=11
FT                   /locus_tag="BPP1732"
FT                   /product="putative transmembrane transport protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2045"
FT                   /db_xref="GOA:Q7W9M3"
FT                   /db_xref="InterPro:IPR011701"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9M3"
FT                   /protein_id="CAE37033.1"
FT                   /translation="MSVATGLAVASNYYAQPLLHTIGAEFALTTATAGAIVTVAQLSYA
FT                   VGLILLVPLGDLYERRTLIALMTALSAVGLLLSAFSPGIGWLMLGTAVTGLLSVVAQVL
FT                   VPFAATLAEPHERGKVVGAVMSGLLLGILLARTIAGALADLGSWRTVYWVAAILMLLMS
FT                   MALWRVLPRSVNPTRLSYPRLLASIVQLYAQEPLLRARSVLGALLFAAFSMLWTPLTFL
FT                   LSGPNYGYSNTTIGLFGLAGAIGAYGANRFGRLNDRGQGNRSTRQGLLLLASWPLLAWG
FT                   AHHVAPLLAGVLALDLAIQAVHVTNQSAIYRLRPEARSRLTAGYMTSYFLGGAAGSLLS
FT                   AWIYAHAGWLGVTAAGALTSLAALLYGCLARSARIPETTPAPAIA"
FT   misc_feature    complement(112319..113449)
FT                   /note="HMMPfam hit to PF00083, Sugar (and other)
FT                   transporter, score 0.0088"
FT   misc_feature    complement(join(112349..112414,112427..112492,
FT                   112697..112753,112784..112849,112943..113008,
FT                   113039..113095,113132..113197,113213..113269,
FT                   113291..113356))
FT                   /note="9 probable transmembrane helices predicted for
FT                   BPP1732 by TMHMM2.0 at aa 33-55, 62-81, 86-108, 120-139,
FT                   149-171, 202-224, 234-253, 321-343 and 347-369"
FT   CDS             complement(113495..114007)
FT                   /transl_table=11
FT                   /locus_tag="BPP1733"
FT                   /product="putative MarR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2046"
FT                   /db_xref="GOA:Q7W9M2"
FT                   /db_xref="HSSP:1JGS"
FT                   /db_xref="InterPro:IPR000835"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9M2"
FT                   /protein_id="CAE37034.1"
FT                   /translation="MKDHVDLVLSQWAHERPDLDVSSMAVLARIFRFNTAALRRIEPLF
FT                   RAAGLHQGQFDLLATLYRAGAPHALSPQQLTAALLLSSGAMTHRLDQLEQGGLIARSPN
FT                   PDDRRGVIVSLTPAGLRTIRQILADYLEAIDALLTPLSATERRQLAGLLKRLLAEHDRT
FT                   TPGGIPQ"
FT   misc_feature    complement(113540..113860)
FT                   /note="HMMPfam hit to PF01047, MarR family, score 4.6e-28"
FT   CDS             complement(114130..114447)
FT                   /transl_table=11
FT                   /gene="bph2"
FT                   /locus_tag="BPP1734"
FT                   /product="DNA-binding protein Bph2"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2047"
FT                   /db_xref="GOA:Q7W9M1"
FT                   /db_xref="HSSP:1EXE"
FT                   /db_xref="InterPro:IPR000119"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9M1"
FT                   /protein_id="CAE37035.1"
FT                   /translation="MRPIKEALNKSQLIAYLVENTGVEAKSVKAVLAGLESSVLASVDK
FT                   KGAGEFTLPGLFKVAVQKVPAKAKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDAA
FT                   Q"
FT   misc_feature    complement(114142..114426)
FT                   /note="HMMPfam hit to PF00216, Bacterial DNA-binding
FT                   protein, score 2.4e-13"
FT   CDS             join(114933..115142,115144..116829)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP1735"
FT                   /product="putative sulfate transporter (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2049"
FT                   /db_xref="PSEUDO:CAE37036.1"
FT   misc_feature    join(115113..115181,115329..115397,115410..115478,
FT                   115569..115622,115656..115724,115782..115850,
FT                   116028..116096,116106..116174,116235..116294)
FT                   /note="9 probable transmembrane helices predicted for
FT                   BPP1735 by TMHMM2.0 at aa 61-83, 133-155, 160-182, 213-230,
FT                   242-264, 284-306, 366-388, 392-414 and 435-454"
FT   variation       115141..115142
FT                   /note="(T)2 in parapertussis; (T)1 in pertussis"
FT   misc_feature    115387..116301
FT                   /note="HMMPfam hit to PF00916, Sulfate transporter family,
FT                   score 2.4e-59"
FT   misc_feature    116377..116709
FT                   /note="HMMPfam hit to PF01740, STAS domain, score 1.7e-07"
FT   misc_feature    116488..116520
FT                   /note="PS00626 Regulator of chromosome condensation (RCC1)
FT                   signature 2."
FT   CDS             complement(116943..117110)
FT                   /transl_table=11
FT                   /gene="rpmG"
FT                   /locus_tag="BPP1736"
FT                   /product="50S ribosomal protein L33"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2050"
FT                   /db_xref="GOA:Q7W9M0"
FT                   /db_xref="InterPro:IPR018264"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9M0"
FT                   /protein_id="CAE37037.1"
FT                   /translation="MAKGIREKIKLESTAGTGHFYTTTKNKRNMPEKMLIKKFDPVARK
FT                   HVDYKETKLK"
FT   misc_feature    complement(116952..117095)
FT                   /note="HMMPfam hit to PF00471, Ribosomal protein L33, score
FT                   2e-18"
FT   CDS             complement(117174..117410)
FT                   /transl_table=11
FT                   /gene="rpmB"
FT                   /locus_tag="BPP1737"
FT                   /product="50S ribosomal protein L28"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2051"
FT                   /db_xref="GOA:Q7W9L9"
FT                   /db_xref="InterPro:IPR001383"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9L9"
FT                   /protein_id="CAE37038.1"
FT                   /translation="MARVCQVTGKGPMVGNNVSHANNKTKRRFLPNLQSRRFWVESENR
FT                   WVRLRVTAKAIRTIDKNGIDAVLADLRARGEAV"
FT   misc_feature    complement(117222..117404)
FT                   /note="HMMPfam hit to PF00830, Ribosomal L28 family, score
FT                   3e-34"
FT   CDS             complement(117780..118973)
FT                   /transl_table=11
FT                   /locus_tag="BPP1738"
FT                   /product="putative transmembrane transport protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2052"
FT                   /db_xref="GOA:Q7W9L8"
FT                   /db_xref="InterPro:IPR011701"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9L8"
FT                   /protein_id="CAE37039.1"
FT                   /translation="MPRQTISRSMPGWLILMGALTAIGPFSIDMYLPAFPSIAAGLGVE
FT                   RGEVERTLAAYLIGMAGAQIIYGPLADRYGRKLPMMGGLILYVLASLGCALAGDIQTLT
FT                   AWRVAQTLGGAAGVVIPRAVIRDHYETQEAARAMSLLMLIMGLAPILAPLAGAQLLAFV
FT                   GWRSLFWLMAAGGLALLLAVALTMKETLAPERVLPLRAGTILSNYRALLAHRGFMGHSL
FT                   AGGMGQAGMFAYIVGSPRIFIELYGIAPQYYGLLFGANAAALIVGSQISARLLRKSAPA
FT                   TLQRRAQVALAVASLSALALALLGLMSLPLLMACLMGYMFSQGFVNPNSAALALAEQGR
FT                   RLGAASALLGTLQLSCGALAGLIISIWPAESVLPLAAVLAGSACLSWQFGRMARRPA"
FT   misc_feature    complement(join(117819..117884,118035..118100,
FT                   118164..118229,118260..118325,118419..118484,
FT                   118497..118562,118599..118649,118665..118721,
FT                   118761..118826,118872..118937))
FT                   /note="10 probable transmembrane helices predicted for
FT                   BPP1738 by TMHMM2.0 at aa 12-34, 49-71, 84-103, 108-125,
FT                   137-159, 163-185, 216-238, 248-270, 291-313 and 363-385"
FT   misc_feature    complement(117834..118934)
FT                   /note="HMMPfam hit to PF00083, Sugar (and other)
FT                   transporter, score 0.0094"
FT   misc_feature    complement(118857..118973)
FT                   /note="Signal peptide predicted for BPP1738 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.992) with cleavage site
FT                   probability 0.976 between residues 39 and 40"
FT   CDS             119133..120398
FT                   /transl_table=11
FT                   /locus_tag="BPP1739"
FT                   /product="putative cyclopropane-fatty-acyl-phospholipid
FT                   synthase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2053"
FT                   /db_xref="GOA:Q7W9L7"
FT                   /db_xref="InterPro:IPR003333"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9L7"
FT                   /protein_id="CAE37040.1"
FT                   /translation="MNPLLSVVERKLQELPVPVQLTLPDGTVLGSPEARVRFVARDKTA
FT                   LAHLAEGAVGVLGQDYVEGRIDIQGSMRDVMAAAAALLLGSPVDAARGGWLTELVRKVT
FT                   SVWRHSIERDARQIEFHYDLSDDFYALWLDPRRVYSCAYYRTPDMTLAQAQEAKLDHIC
FT                   RKLRLQPGERFLDVGAGWGGLLLWAAENYDVDATGITLSRNQHAYVNRLIEEKGLSGRV
FT                   RMELLDYRKLDEGAPYDKIASVGMFEHVGRAQLPGYFAKLRRLVKPGGLVMNHGITAGG
FT                   VYNAELGNGMGEFIEKYIFPGGELTHISSVLEAVTAGGLEAVDDENLRPHYARTLWAWS
FT                   DALEACLPEAARILQGEQGERSLRAYRLYLAGCAMGFEHGWISLHQVLVTTPATGRTDE
FT                   LDMARDLAYPWRRDYIYAGNAR"
FT   misc_feature    119796..120305
FT                   /note="HMMPfam hit to PF02353,
FT                   Cyclopropane-fatty-acyl-phospholipid synthase, score
FT                   2.3e-58"
FT   CDS             120850..121860
FT                   /transl_table=11
FT                   /locus_tag="BPP1740"
FT                   /product="putative periplasmic substrate-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2055"
FT                   /db_xref="GOA:Q7W9L6"
FT                   /db_xref="InterPro:IPR007210"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9L6"
FT                   /protein_id="CAE37041.1"
FT                   /translation="MRFTPVKTLAALAALAALCAFSGAAQAADQPQCEVSRPVNFGGMN
FT                   WESNLVLVDIERFIMEKGYGCKTEVLPTETLPALAALERGDLDINTEIWLNSVADPWDR
FT                   AQKTGKVKRVGELYMGGEAWFVPRYTAERLPELKSAADLPKFKDRFKDPEEPGKGRFYG
FT                   CPAGWGCEVTSTNLFHALKLDDSYTLYSPGTGAAQKAALMSAYKRKQDVVFYYWYPTPL
FT                   VGSMDLVKLELPPYDAEKHKCLTAPKCSDPQPSAYPENPVFTAVNTRFSEEAPKLTEFL
FT                   SKVAVPLPVMDQTLAHMEESGDESGAVAQWFLKNQADVWKKWVPADVAERVQTAL"
FT   misc_feature    120850..120930
FT                   /note="Signal peptide predicted for BPP1740 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 1.000 between residues 27 and 28"
FT   CDS             122033..122890
FT                   /transl_table=11
FT                   /locus_tag="BPP1741"
FT                   /product="putative binding-protein-dependent transport
FT                   protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2056"
FT                   /db_xref="GOA:Q7W9L5"
FT                   /db_xref="InterPro:IPR000515"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9L5"
FT                   /protein_id="CAE37042.1"
FT                   /translation="MFPEVIPARAVRGAIDGFVDHLVTNYADTLEAMSQPFLSVLVWLE
FT                   QVLRQSSWWAVVAVTIAIAWLVSRRIGLSLAMGALLCVIGVLGLWDAGMQTLALMIMAA
FT                   GLSVVIGIPLGVLMARVDWLRAGMLPVLDVMQTMPSFVYLIPVVMLFGLGKIPAIIATV
FT                   IYAVPPLIRLTDLGIRLVDREVLEAARAFGANPRQQLFGVQLPLALPNIMAGINQTTMM
FT                   ALSMVVIASMIGARGLGYEVLLGINRLEVGRGLLAGLGIVVLAVLFDRITQSYGQRVRT
FT                   GGQR"
FT   misc_feature    join(122180..122233,122243..122302,122321..122389,
FT                   122456..122524,122702..122770,122783..122836)
FT                   /note="6 probable transmembrane helices predicted for
FT                   BPP1741 by TMHMM2.0 at aa 50-67, 71-90, 97-119, 142-164,
FT                   224-246 and 251-268"
FT   misc_feature    122561..122773
FT                   /note="HMMPfam hit to PF00528, Binding-protein-dependent
FT                   transport systems inner membrane component, score 2.2e-11"
FT   misc_feature    122564..122650
FT                   /note="PS00402 Binding-protein-dependent transport systems
FT                   inner membrane comp. sign."
FT   CDS             122887..124149
FT                   /transl_table=11
FT                   /locus_tag="BPP1742"
FT                   /product="putative ABC-transporter ATP-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2057"
FT                   /db_xref="GOA:Q7W9L4"
FT                   /db_xref="HSSP:1B0U"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9L4"
FT                   /protein_id="CAE37043.1"
FT                   /translation="MSKIEVKNIYKIFGPHPGKWLQAARDGISKEDLLAKSGHTLGLRD
FT                   ISLSIEKGSIYVIMGLSGSGKSTLIRHFNRLIEPSAGHILVDGVDVVSLNKRDLETFRQ
FT                   KKMSMVFQRFGLFPHRTVLDNAGYGLAVQGVARAEREQRARHWLDQVGLSGFENQYPHQ
FT                   LSGGMQQRVGLARALATDAEILLMDEAFSALDPLIRREMQDHLLQLQAKLNKTIVFITH
FT                   DLDEALRLGNRIAILKDGELVQEGTPEDILLNPATEYVQSFLQDVNRTKVLNAAHAVNP
FT                   PRLTLTMRSRPAHALDRMQALSYEYAPVLDGKRLAGVLMAAAAQQAVDEGARDVSRFVE
FT                   DLASVPATAGLDQVLAQLVHSDQPVAVTGEGDEFIGMLSRKKVVELVTPVLAESDSADG
FT                   QGDAADAASDGAGQAHERDAA"
FT   misc_feature    123043..123606
FT                   /note="HMMPfam hit to PF00005, ABC transporter, score
FT                   2.2e-69"
FT   misc_feature    123064..123087
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    123376..123420
FT                   /note="PS00211 ABC transporters family signature."
FT   misc_feature    123715..123873
FT                   /note="HMMPfam hit to PF00571, CBS domain, score 2.7"
FT   misc_feature    123892..124050
FT                   /note="HMMPfam hit to PF00571, CBS domain, score 1.7"
FT   CDS             124250..124624
FT                   /transl_table=11
FT                   /locus_tag="BPP1743"
FT                   /product="putative tautomerase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2058"
FT                   /db_xref="GOA:Q7W9L3"
FT                   /db_xref="InterPro:IPR014347"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9L3"
FT                   /protein_id="CAE37044.1"
FT                   /translation="MPLLNVQIMQGHQPAQKSALLAAACQAVVDSIGAPLASVRVVLEE
FT                   VPAAHVIVAGELGRQMALVTVDMIAGRTDEQKEALIGALNRAVCDSIGIDGADVRVMIH
FT                   DVSKANMGVANGISARAAGR"
FT   misc_feature    124295..124408
FT                   /note="HMMPfam hit to PF01361, Tautomerase enzyme, score
FT                   0.0012"
FT   CDS             124673..125878
FT                   /transl_table=11
FT                   /locus_tag="BPP1744"
FT                   /product="putative thiolase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2059"
FT                   /db_xref="GOA:Q7W9L2"
FT                   /db_xref="HSSP:1DLU"
FT                   /db_xref="InterPro:IPR002155"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9L2"
FT                   /protein_id="CAE37045.1"
FT                   /translation="MKTGGIDIMNEVVVVAAARTAIGDFGGGLKDVAPCDLGATVIREA
FT                   LARAGVAGPEVGHVAVGHVINTEPRDMYLSRVAAINAGIGKETPAFNVNRLCGSGLQAI
FT                   VSAAQTIMLGDTEIAVGAGAESMSRAPYIAPAQRWGARMGDSAMVDMMTGALSDPFGRM
FT                   HMGVTAENVAARYSISRADQDALAVESHRRAAAAIDAGRFRDQIVPVTLKTRKGETVFD
FT                   TDEHVRRDITIEGMAALRPVFQKENGTVTAGNASGLNDGAGAVVLMSAAAAAQRGIAPM
FT                   ARLVAYAHAGVDPEIMGIGPVPATQAALKRAGLTVDQLDVIEANEAFAAQACAVTRQLE
FT                   LDPAKVNPNGSGISLGHPIGATGAIITVKALYELQRVGGRYALVTMCIGGGQGIAAIFE
FT                   RV"
FT   misc_feature    124697..125485
FT                   /note="HMMPfam hit to PF00108, Thiolase, N-terminal domain,
FT                   score 2.9e-122"
FT   misc_feature    124949..125005
FT                   /note="PS00098 Thiolases acyl-enzyme intermediate
FT                   signature."
FT   misc_feature    125498..125872
FT                   /note="HMMPfam hit to PF02803, Thiolase, C-terminal domain,
FT                   score 2.5e-66"
FT   misc_feature    125816..125857
FT                   /note="PS00099 Thiolases active site."
FT   CDS             join(125962..126327,126329..126730)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP1745"
FT                   /product="conserved hypothetical protein (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2060"
FT                   /db_xref="PSEUDO:CAE37046.1"
FT   variation       126325..126327
FT                   /note="GCG in parapertussis; GCC(TG)"
FT   CDS             126844..127608
FT                   /transl_table=11
FT                   /locus_tag="BPP1746"
FT                   /product="putative gntR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2061"
FT                   /db_xref="GOA:Q7W9L1"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9L1"
FT                   /protein_id="CAE37047.1"
FT                   /translation="MTTPIVRQALYLEVADRLRTMIRTHALGAGAWVDEAGLTEQLGIS
FT                   RTPLREALKVLATEGLVRLEPGRGCFVNELTVRDLEQIFPLMAMLEGRCAFEAAQRAGD
FT                   DDLRALEPLHRALQAHAQAGRIDAYYETNYRIHVAVQTLADNRWLSDMVDNLRKVLSLF
FT                   RHKSLALPGRIRESCAEHMAIFAALKARDPEGAEALTCKHLLCQLAALQALAGQEPAGG
FT                   AAAIDSPAVQAVQELNHVRTRSPGIRTRRTHA"
FT   misc_feature    126883..127059
FT                   /note="HMMPfam hit to PF00392, Bacterial regulatory
FT                   proteins, gntR family, score 9.9e-13"
FT   CDS             127559..128860
FT                   /transl_table=11
FT                   /locus_tag="BPP1747"
FT                   /product="putative malonyl-CoA decarboxylase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2062"
FT                   /db_xref="GOA:Q7W9L0"
FT                   /db_xref="InterPro:IPR007956"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9L0"
FT                   /protein_id="CAE37048.1"
FT                   /translation="MSALDPQASARVARTPDAEPEAVDASAAGESAGLIARLGRLFERD
FT                   RLPPPADLAQLFEARLTDVRANKLAQAWRLAYEQADGKRRRAMLGGLAQVGAGMQGDGA
FT                   QGTRLFKRFNALPDGLRFLVALRADMLRWRKQVAGLQALDKELEALLSAWFDVGLLELR
FT                   PLTWDSPASLLEKLILYEAVHEIRSWDDLRHRVAGDRRCYAYFHPQMPDVPLIFVEVAF
FT                   SAQMADNVQALLDTSAPPQDLDKARWAIFYSISNTQPGLRGISFGNFLLKRVIDRLLQE
FT                   LPKLKFFATLSPIPGFADWLSRLDAQEVEQAVRDKARTRSGAPDGARWVARLARAATGK
FT                   PSEVVQRAGLRLAARYLQAMRAGQPLDPVARFHLGNGARIERLNWAADTSAKGLAQSCG
FT                   MMVNYLYELGDLDGNLARLNEGKPQVSRGIARLG"
FT   CDS             128857..129663
FT                   /transl_table=11
FT                   /locus_tag="BPP1748"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2063"
FT                   /db_xref="GOA:Q7W9K9"
FT                   /db_xref="HSSP:1DCI"
FT                   /db_xref="InterPro:IPR001753"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9K9"
FT                   /protein_id="CAE37049.1"
FT                   /translation="MSRAMKPNSQPGQILCRIDAGVAHVTLSHPGRMNAMTVAMWRQLR
FT                   EVFEALGADAALRCVVVAGAEGHFAAGADIREFPAERADLAGVQRYHREILAPALAAVA
FT                   ACPHPVLARIEGVCVGGGLEIAAQCDLRIAAESARFGVPIGKLGFPMAPDEMRGLLDLV
FT                   GRAATLAILLEGRVFDAAEALRLGLVTRTVPVAELDQAVQRSVAAILGGAPLAARINKR
FT                   QARRLCAGAPLGEDEYLDFFSYAESRDHREGVRAFLAGTAPTFTGD"
FT   misc_feature    128923..129438
FT                   /note="HMMPfam hit to PF00378, Enoyl-CoA
FT                   hydratase/isomerase family, score 4.1e-29"
FT   CDS             129669..131210
FT                   /transl_table=11
FT                   /locus_tag="BPP1749"
FT                   /product="putative malonyl-CoA synthetase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2064"
FT                   /db_xref="GOA:Q7W9K8"
FT                   /db_xref="HSSP:1BA3"
FT                   /db_xref="InterPro:IPR000873"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9K8"
FT                   /protein_id="CAE37050.1"
FT                   /translation="MSNANLYAVLEGGFPADRDRVALETPTLRYTWNDIDRASACLANL
FT                   LASLKLPAGARVAVQVEKSPEALLLYLATLRAGLVYLPLNTAYREAEIEYFLGNAEPAV
FT                   VVCTSANAGWVRRAAAKAGSAHVYTLDEDRTGTLLQAAAAMPQRFRTVARKADDLAAIL
FT                   YTSGTTGRSKGAMLSHGNLASNARVLHQYWGWREDDVLLHMLPIFHVHGLFVASHGALL
FT                   AGARMIWLPRLDVDQALRYLPQSTVMMGVPTYYVRLLADARFDRAACANMRLFISGSAP
FT                   LLTETFTDFQACTGQTILERYGMSETVMLTSNPCRPADGERLGGTVGKALPGVQVRVVD
FT                   DAGQALAAGEIGNVQVRGPNVFSGYWRMPEKTREEFTADGWFKTGDVGHWGGESGGRAV
FT                   PADYLSIVGRSKDLIISGGYNVYPKEIETVIDEMQGVLESAVIGVPHPDFGEAVVAVVV
FT                   PRAGAAIDVAAMQADLKSRIANFKVPKRIHVVDQLPRNTMGKVQKNVLRDTYAAS"
FT   misc_feature    129759..130991
FT                   /note="HMMPfam hit to PF00501, AMP-binding enzyme, score
FT                   3.1e-115"
FT   misc_feature    130152..130187
FT                   /note="PS00455 Putative AMP-binding domain signature."
FT   CDS             131406..132377
FT                   /transl_table=11
FT                   /locus_tag="BPP1750"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2066"
FT                   /db_xref="GOA:Q7W9K7"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9K7"
FT                   /protein_id="CAE37051.1"
FT                   /translation="MKYPILGAALIAATALGAAAPAQAAWPERPVTIIVPFPAGGGTDT
FT                   FARPLAQQLGMQLGQSVVIDNKGGAGGTVGAAVASKAKPDGYTFFMGGAHHALAPSLYK
FT                   NLSYDIQKDFVPVALLAQPPQVVVINTAKLPVKSLQEFIEYARKRPGDINFGTAGKGST
FT                   HHLAGELFAMQTGIKLVDVPYQGAGPMLSALIGGQVDLAFDGLGSSAGHIRAGTIKPLA
FT                   VAASQRSPSFPDVPTAAQAGVPNYEVSTWYALWAPAGTPQEAVDKMTAAVTKALNDPKI
FT                   RETWAGNGSAIPNLTGPQFGAFVDSEVTRWAKVVKDSGVTLD"
FT   misc_feature    131406..131477
FT                   /note="Signal peptide predicted for BPP1750 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.982 between residues 24 and 25"
FT   misc_feature    131541..132365
FT                   /note="HMMPfam hit to PF03401, Uncharacterized protein
FT                   family, UPF0065, score 1.5e-104"
FT   CDS             132462..133046
FT                   /transl_table=11
FT                   /locus_tag="BPP1751"
FT                   /product="putative superoxide dismutase"
FT                   /EC_number="1.15.1.1"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2067"
FT                   /db_xref="GOA:Q7W9K6"
FT                   /db_xref="HSSP:1EQW"
FT                   /db_xref="InterPro:IPR018152"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9K6"
FT                   /protein_id="CAE37052.1"
FT                   /translation="MAAGSHGAGLPVREPRRALFKERVMKSLIALALAAMSGVAAAQSV
FT                   EMSLLSPKGDDQKIGQIKYEQTDYGVLFTPDLHGLAPGVHGFHLHAKPSCAMTKVDGKD
FT                   MVGGGAGGHWDPDNTGAHKGPYDKTGHKGDLPAVYVTADGKATYPVLAPRLKVADLAGH
FT                   ALMIHVGGDNYSDHPAALGGGGGRMACGVVK"
FT   misc_feature    132462..132587
FT                   /note="Signal peptide predicted for BPP1751 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.978) with cleavage site
FT                   probability 0.910 between residues 42 and 43"
FT   misc_feature    132594..133040
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF00080, Copper/zinc superoxide
FT                   dismutase (SODC), score 1.6e-35"
FT   misc_feature    132717..132749
FT                   /note="PS00087 Copper/Zinc superoxide dismutase signature
FT                   1."
FT   misc_feature    133005..133040
FT                   /note="PS00332 Copper/Zinc superoxide dismutase signature
FT                   2."
FT   CDS             133205..134179
FT                   /transl_table=11
FT                   /locus_tag="BPP1752"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2068"
FT                   /db_xref="InterPro:IPR007487"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9K5"
FT                   /protein_id="CAE37053.1"
FT                   /translation="MLIGKKHFLTVGALAMAMAIHAAPVMVQQKSVAITAIVEHPALDS
FT                   VRDGVQDALKQAGYESGKNLKWQYQSAQGNTGTAAQIARKFVGDRPDVIVAIATPSAQA
FT                   VVAATKDVPVVYSAVTDPVAAQLVPSMEASNTNVTGVSDLLALDKQIELIKKVVPNAKR
FT                   VGMVYNPGEANSVVVVKQMQDLLPKAGMTLVEAAAPRTVDVASAARSLIGKVDVIYTNT
FT                   DNNVVSAYESLVKVGNDAKIPLVASDTDSVKRGAIAALGINYRDLGVQTGKMVVRILKG
FT                   EKPGAMPSETSSKLELYVNPGAAAKQGVTLSDALVKSAAQVIK"
FT   misc_feature    133205..133270
FT                   /note="Signal peptide predicted for BPP1752 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.577 between residues 22 and 23"
FT   CDS             134289..135179
FT                   /transl_table=11
FT                   /locus_tag="BPP1753"
FT                   /product="putative transmembrane component of ABC
FT                   transporter"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2069"
FT                   /db_xref="GOA:Q7W9K4"
FT                   /db_xref="InterPro:IPR001851"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9K4"
FT                   /protein_id="CAE37054.1"
FT                   /translation="MSLFSLLGALEIGLIFSLVALGVLISFRLLRFPDLTVDGSFPLGG
FT                   AVAAILIAAGYDPFTSTIVATLAGAAAGLVTGWLNVRLRIMDLLASILMMIALYSVNLR
FT                   IMGKPNVPLITEPTVFTLLQPQWLSDYVARPLILLVVVIIVKLALDWFLATQAGLAMRS
FT                   TGSNGRMARAQGVNTGAMILAGMALSNALVALAGALFAQTQGGADISMGIGTIVIGLAA
FT                   VIVGESILPSRRLVMATLAVILGAIVYRFFIALALNSDFIGLKAQDLNLVTAVLVTIAL
FT                   VIPMLKRRLVGRKGA"
FT   misc_feature    134292..135164
FT                   /note="HMMPfam hit to PF02653, Branched-chain amino acid
FT                   transport system / permease component, score 0.0017"
FT   misc_feature    join(134307..134375,134463..134531,134550..134609,
FT                   134679..134747,134823..134891,134919..134978,
FT                   134991..135050,135093..135146)
FT                   /note="8 probable transmembrane helices predicted for
FT                   BPP1753 by TMHMM2.0 at aa 7-29, 59-81, 88-107, 131-153,
FT                   179-201, 211-230, 235-254 and 269-286"
FT   CDS             135181..135975
FT                   /transl_table=11
FT                   /locus_tag="BPP1754"
FT                   /product="putative ABC-transporter ATP-binding component"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2070"
FT                   /db_xref="GOA:Q7W9K3"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9K3"
FT                   /protein_id="CAE37055.1"
FT                   /translation="MLSAKDLHITFNAGTPIETRALRGLSLDIPNGQFVTVIGSNGAGK
FT                   STFLNAISGDLPVDTGTIRINDADVTRQPVWERAGRVARVFQDPMAGTCEDLTIEENMA
FT                   LAQMRGARRGFSRAVKASMREGFRERLATLGLGLENRLADRIGLLSGGQRQAVSLLMAA
FT                   LQPSRILLLDEHTAALDPRTADFVLQLTARIVAESQLTTMMVTHSMRQALDVGERTVML
FT                   HQGQVVLDVSGDERKGMDVPDLLAMFERVRGEKLSDDALLLG"
FT   misc_feature    135274..135855
FT                   /note="HMMPfam hit to PF00005, ABC transporter, score
FT                   5e-40"
FT   misc_feature    135295..135318
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    135625..135669
FT                   /note="PS00211 ABC transporters family signature."
FT   CDS             complement(136001..136810)
FT                   /transl_table=11
FT                   /locus_tag="BPP1755"
FT                   /product="putative molybdenum-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2071"
FT                   /db_xref="GOA:Q7W9K2"
FT                   /db_xref="HSSP:1H9M"
FT                   /db_xref="InterPro:IPR016462"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9K2"
FT                   /protein_id="CAE37056.1"
FT                   /translation="MSAPSLQLDGTLWLRSGDQPWGGQHRIDLLAQIEATGSISAASRA
FT                   AGMSYKGAWDAIDAMNNLAGEPLVLRSAGGRGGGGGTRLTDRARRLIATFRALQAEHQR
FT                   FVQHLAASGLDAAGDIDIMRRFMLKTSARNRLLGTVEAVHAGAVNDEIVLRIAGGQRIA
FT                   AVITRASTEELGLAPGTQAIALIKAQAVLLGLPGPGLRLSARNQLPGKVAEVRPGAVNS
FT                   EIIVDLDGGGTLAAIITEESARDLALAAGTPVCALFDAASVMLGVLD"
FT   misc_feature    complement(136016..136207)
FT                   /note="HMMPfam hit to PF03459, TOBE domain, score 4.6e-17"
FT   misc_feature    complement(136232..136423)
FT                   /note="HMMPfam hit to PF03459, TOBE domain, score 1.3e-14"
FT   misc_feature    complement(136475..136780)
FT                   /note="HMMPfam hit to PF02573, N-terminal HTH domain of
FT                   molybdenum-binding protein, score 7.5e-40"
FT   CDS             136921..137511
FT                   /transl_table=11
FT                   /locus_tag="BPP1756"
FT                   /product="putative lipoprotein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2072"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9K1"
FT                   /protein_id="CAE37057.1"
FT                   /translation="MQIVKLRTVSVAAGLLAGCASGPTLRSDYDHSANFAQYRTFAFMS
FT                   PLGTDRAGYSSLLTERLKQATRGQLEMRGYTYDESKPDLLVNFNGKLQEKTQVTPAPPP
FT                   MGPYYGYRAGFYGGWPGYGWGDDVYQYTEGTLNIDLIDARRRQLVWEGVATGEVNDLDK
FT                   AQSAASVEQGVAQIFSKYPFRAGNGQPQTPPKP"
FT   misc_feature    136921..136998
FT                   /note="Signal peptide predicted for BPP1756 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.986) with cleavage site
FT                   probability 0.793 between residues 26 and 27"
FT   misc_feature    136945..136977
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             137522..138700
FT                   /transl_table=11
FT                   /locus_tag="BPP1757"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2073"
FT                   /db_xref="GOA:Q7W9K0"
FT                   /db_xref="InterPro:IPR002641"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9K0"
FT                   /protein_id="CAE37058.1"
FT                   /translation="MSKRKARRGAGMPDYETVALVLQGGGALGAYQAGVYEGLHAAGIR
FT                   PNWLAGISIGGINAAIIAGAPVDERVGRLRGFWEAICRPTGFVGLPWGDAWAALFANAP
FT                   FGFGSNQSNGQLAAFNALTRGQPGFFEPRFPPPYLVQGGGAAATSFYDTTPLLQTLRDY
FT                   VDFDLLNRGDVRVSLGAVNVRTGNFAYFDSRETVIRPEHVMASGALPPGFPAIEIDGEF
FT                   YWDGGLVSNTPLTKVLAVHPMRDTLAFQVDLWPARGPLPTSLEEVAERQKDIQYSSRTR
FT                   IVTDTFRRQLKLRRSLQRVLDRLPPQVRSSRELAQIRREACTPLVNVVNLIYEANQFER
FT                   HSKDYEFNTESMREHWRFGLADIERTLAQPGVLDKPSPDESFVTHDIHRADA"
FT   misc_feature    137579..138235
FT                   /note="HMMPfam hit to PF01734, Patatin-like phospholipase,
FT                   score 2.7e-14"
FT   CDS             join(138803..139156,139156..139161)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP1758"
FT                   /product="putative DNA-binding protein (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2074"
FT                   /db_xref="PSEUDO:CAE37059.1"
FT   misc_feature    138908..139111
FT                   /note="HMMPfam hit to PF00486, Transcriptional regulatory
FT                   protein, C terminal, score 0.00058"
FT   variation       139154..139156
FT                   /note="CAG in parapertussis; CAG(GCGACGCCGCCGCGG) in
FT                   pertussis"
FT   CDS             139342..140658
FT                   /transl_table=11
FT                   /locus_tag="BPP1759"
FT                   /product="putative efflux system inner membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2075"
FT                   /db_xref="GOA:Q7W9J9"
FT                   /db_xref="InterPro:IPR006143"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9J9"
FT                   /protein_id="CAE37060.1"
FT                   /translation="MPHARVRPSQWRLGAARFYLREESMRFSPQRVSAFGLVATLSVLL
FT                   AACGEKPQFNPGMPQVSVITVQPQRAAVVSELPGRVDAVRDAQIRARVTGIVQKIAFEQ
FT                   GGDVQADQLLFKIDPAPYQAAYDQAAAQLKQAQADLFSAKLLAERYAPLVKANAVSKQE
FT                   YDNAVARYRQADASVAAAKANLTNAKINLGYTDVTSPIKGRIGKPLVTEGALVEATSAT
FT                   QMATVQQLDPIYVDFTQSTADLAALRRAFAAGKLQQVGKDAVKVQVVLEDGSIYPEAGK
FT                   LLFTGVTVDPTTGQVNLRAEVPNPDNILLPGMYVRVRVDQGVDDKALLVPQQALQRTAD
FT                   GMQSLMLVKDNKVEQVPVTTGSVIHNQWVINSGLAAGDVVVVEGFQKIRPGALVQASPW
FT                   NKGGAAPAGQQPAPGQQAPAQQPAKQEPAKQAPAAGQQS"
FT   misc_feature    139453..139485
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    139594..140487
FT                   /note="HMMPfam hit to PF00529, HlyD family secretion
FT                   protein, score 1e-67"
FT   CDS             join(140725..142410,142410..143936)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP1760"
FT                   /product="putative efflux system transmembrane protein
FT                   (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2076"
FT                   /db_xref="PSEUDO:CAE37061.1"
FT   misc_feature    join(140725..142410,142410..143783)
FT                   /note="HMMPfam hit to PF00873, AcrB/AcrD/AcrF family, score
FT                   0"
FT   misc_feature    join(140749..140808,141742..141801,141820..141888,
FT                   141898..141966,142036..142104,142147..142215,
FT                   142333..142392,143314..143373,143392..143460,
FT                   143473..143541,143602..143670,143713..143781)
FT                   /note="12 probable transmembrane helices predicted for
FT                   BPP1760 by TMHMM2.0 at aa 9-28, 340-359, 366-388, 392-414,
FT                   438-460, 475-497, 537-556, 864-883, 890-912, 917-939,
FT                   960-982 and 997-1019"
FT   variation       142408..142410
FT                   /note="18 bp deletion in parapertussis, relative to
FT                   pertussis, following this codon"
FT   CDS             143933..145432
FT                   /transl_table=11
FT                   /locus_tag="BPP1761"
FT                   /product="putative efflux system outer membrane component"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2077"
FT                   /db_xref="GOA:Q7W9J8"
FT                   /db_xref="InterPro:IPR010131"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9J8"
FT                   /protein_id="CAE37062.1"
FT                   /translation="MMAVMYKRSALSVLVAAALAGCSLAPDYKRPEAPVQANWPDQPKV
FT                   QYGAYASPTSLGEQPAAAVAPQGATPADEIGWREFFRDARLQKLIELALVNNRDLRVAV
FT                   QRVEEARAQYGVQRGAQWPSIGAGIQGQRQHLPPDMRPLGPDSTSISSQYQAGLGLTTF
FT                   EIDLFGRLRNLSEAAYQQYLSTEQAQRSVHITLVGAVAQSYFNLRAAEVQLELTQKTLA
FT                   SRQESYNLVKTRFDGGVASELDLNQSKSLLDSASADLAALARARAQAANALVVLVGLPG
FT                   LPEDLPAPAVFGRDQLLASVPAGLPSDLLTRRPDILAAENQLKAANANIGAARAAFFPT
FT                   ISLTGLLGVASPSLDNLFKGGQGYWSFSPSITTPLFAGGSIREGLNLAKARDNIAVAQY
FT                   EQSIQQAFREVSDALAGEATYSAQLDAQRALQVAAGRTLELSNLRYNNGIDSYLQVQTA
FT                   QVDFFNAQLGLVQTGLAALINRVELYKALGGGWQESTTKQP"
FT   misc_feature    143933..144007
FT                   /note="Signal peptide predicted for BPP1761 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.987) with cleavage site
FT                   probability 0.776 between residues 25 and 26"
FT   misc_feature    143966..143998
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    144188..144799
FT                   /note="HMMPfam hit to PF02321, Outer membrane efflux
FT                   protein, score 1.5e-42"
FT   misc_feature    144836..145426
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF02321, Outer membrane efflux
FT                   protein, score 6.2e-46"
FT   CDS             145429..146175
FT                   /transl_table=11
FT                   /gene="pdxJ"
FT                   /locus_tag="BPP1762"
FT                   /product="pyridoxal phosphate biosynthetic protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2078"
FT                   /db_xref="GOA:Q7W9J7"
FT                   /db_xref="HSSP:1HO1"
FT                   /db_xref="InterPro:IPR004569"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9J7"
FT                   /protein_id="CAE37063.1"
FT                   /translation="MIELGVNIDHVATLRQQRHTAYPDPVQAALRAEDAGADLITLHLR
FT                   EDRRHIQDADVYAIRPLLRTRMNLECAVTPEMLEIACAVKPSDVCLVPEKRTELTTEGG
FT                   LDVAGAQAAVTDAVQLLAEAGIRVSLFIDPDARQIEAAARAGAPVIELHTGAYAEARDD
FT                   AAVQAELARVRAAVAEGLRHGLRVNAGHGLHYGNVQAVAALDGIAELNIGHAIVAQSIF
FT                   DGWDKAVRDMKALMVQARLAAVRGHA"
FT   CDS             146260..146721
FT                   /transl_table=11
FT                   /gene="acpS"
FT                   /locus_tag="BPP1763"
FT                   /product="putative holo-[acyl-carrier protein] synthase"
FT                   /EC_number="2.7.8.7"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2079"
FT                   /db_xref="GOA:Q7W9J6"
FT                   /db_xref="HSSP:1FTH"
FT                   /db_xref="InterPro:IPR004568"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9J6"
FT                   /protein_id="CAE37064.1"
FT                   /translation="MSSVSAAGATPPASPGCIAGIGMDLLRIERIERALARHGDRFAQK
FT                   ILGPEELAKFHARRRRDPARGVRFLATRFAAKEAFSKAIGLGMRMPMSWRRVQTLNALG
FT                   GRPVLVIGAELADWFDARFGAAHVSITDESDMAAAYVIVERKPAPDGRP"
FT   misc_feature    146317..146679
FT                   /note="HMMPfam hit to PF01648, 4'-phosphopantetheinyl
FT                   transferase superfamily, score 1.2e-18"
FT   CDS             146718..147821
FT                   /transl_table=11
FT                   /gene="nagZ"
FT                   /locus_tag="BPP1764"
FT                   /product="putative beta-hexosaminidase"
FT                   /EC_number="3.2.1.52"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2080"
FT                   /db_xref="GOA:Q7W9J5"
FT                   /db_xref="InterPro:IPR001764"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9J5"
FT                   /protein_id="CAE37065.1"
FT                   /translation="MRPARPPSKPRLEPMSSKKKTKPVLPPGPVMVDVAGTTLTKDEKR
FT                   RLRNPLVGGVILFARNFTDRRQLCALTRAIHKARKEPLLIAVDHEGGRVQRFRDDGFTA
FT                   LPPMQELGKLWDRDPLAAMRLATEAGYVLAAELRACGVDLSFTPVLDLDYGVSKVIGNR
FT                   AFHHDARVVTMLSRALAQGLALAGMAACGKHFPGHGFVGADSHHEIPVDPRPLARILKD
FT                   DAAPYAWLGDLVMPAVMPAHVIYPKVDAQPAGFSRRWVSEILRERLGYDGVVFSDDLTM
FT                   EGASVAGDILARAEAALGAGCDMVLVCNRPDLADELLDRLQVQHPAASVERIRRLMPRF
FT                   AAPDWDTLQNDSRYQHARRLQSQIVSG"
FT   misc_feature    146820..147677
FT                   /note="HMMPfam hit to PF00933, Glycosyl hydrolase family 3
FT                   N terminal domain, score 4.7e-47"
FT   CDS             147841..149613
FT                   /transl_table=11
FT                   /gene="uvrC"
FT                   /locus_tag="BPP1765"
FT                   /product="putative excinuclease ABC subunit C"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2081"
FT                   /db_xref="GOA:Q7W9J4"
FT                   /db_xref="InterPro:IPR000305"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9J4"
FT                   /protein_id="CAE37066.1"
FT                   /translation="MYRHLDAAGEVMYVGKARDLKKRVSSYFQKNLASPRIAQMVAKVA
FT                   SVDVTVTRSEAEALLLENNLIKSLRPRYNILFRDDKSYPYLLITGHAWPRIAYYRGATS
FT                   KRGQYFGPYPNSWAVRETIQILQKVFRLRTCEDTVFANRSRPCLLHQIGRCSAPCVGVI
FT                   EAGDYAHDVQRAVRFLNGEAREVMDEIEARMLQASTELRFEEAAVLRDQMGSLSKVLHQ
FT                   QTMENVGGDDTDVIAVASAGGKICVNLAMVRGGRHLGDKPFFPTHAEGEQPAQVLEAFV
FT                   AQHYADGAMPPVLVCSHALPDSGLVGLLAEQGGTRAARVLTRPQGVRRSWLEQAQKNAE
FT                   MALARALTESGARAGRTLALAEALDLDTDEESLDALRIECFDISHTAGEATQASCVVFL
FT                   HHDMQPSLYRRYNIVGITPGDDYAAMRQVLTRRFGKVADGEAPMPGLVLIDGGKGQVEV
FT                   ARQVFVELGLDIQSLVGVAKGEGRKVGLETLVFADGRPPVALGKESAALMLIAQVRDEA
FT                   HRFAITGMRARRAKTRNVSRLEEIEGIGARRRQRLLARFGGLSGVSSASIEDLASVEGI
FT                   SQELAVRIYDALHG"
FT   misc_feature    147841..148101
FT                   /note="HMMPfam hit to PF01541, Endo/excinuclease amino
FT                   terminal domain, score 1e-21"
FT   misc_feature    148390..148497
FT                   /note="HMMPfam hit to PF02151, UvrB/uvrC motif, score
FT                   3.5e-09"
FT   misc_feature    149512..149601
FT                   /note="HMMPfam hit to PF00633, Helix-hairpin-helix motif,
FT                   score 0.0003"
FT   CDS             149653..150225
FT                   /transl_table=11
FT                   /gene="pgsA"
FT                   /locus_tag="BPP1766"
FT                   /product="putative CDP-diacylglycerol--glycerol-3-phosphate
FT                   3-phosphatidyltransferase"
FT                   /EC_number="2.7.8.5"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2082"
FT                   /db_xref="GOA:Q7W9J3"
FT                   /db_xref="InterPro:IPR004570"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9J3"
FT                   /protein_id="CAE37067.1"
FT                   /translation="MPINVPIFLTWLRIAMIPLVVGLFYLPESWMSVPMRDTFAAWAFI
FT                   IAALTDWFDGWLARRWNQTSAFGAFLDPVADKLMVCAALIVLLDLSRVDAFISLIIIGR
FT                   EITISALREWMAKIGASASVAVHRLGKFKTAAQMVAIPCLLYDQPLFGLSSRLIGDVLI
FT                   VVAAVLTVWSMLYYLQRAWPAIREKSQ"
FT   misc_feature    join(149671..149730,149767..149826,149845..149913,
FT                   150118..150186)
FT                   /note="4 probable transmembrane helices predicted for
FT                   BPP1766 by TMHMM2.0 at aa 7-26, 39-58, 65-87 and 156-178"
FT   misc_feature    149773..150204
FT                   /note="HMMPfam hit to PF01066, CDP-alcohol
FT                   phosphatidyltransferase, score 2.8e-36"
FT   misc_feature    149812..149880
FT                   /note="PS00379 CDP-alcohol phosphatidyltransferases
FT                   signature."
FT   CDS             150296..151642
FT                   /transl_table=11
FT                   /locus_tag="BPP1767"
FT                   /product="putative transmembrane transport protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2083"
FT                   /db_xref="GOA:Q7W9J2"
FT                   /db_xref="InterPro:IPR016160"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9J2"
FT                   /protein_id="CAE37068.1"
FT                   /translation="MAGWFAAAAFWRPRSAAAIGALRSCPRRGAVMAMNSETAVLDSPA
FT                   LRRRDWQIILLIGVAHSSSHFFQLVLPSLYVSLGTEFGLDFARLGLLVSVFYVVSGLGQ
FT                   ASSGFVVDRIGARPVLWFGLACFVLSAVLIGAVSGYAMLMLAAAIGGIGNSVFHPADYS
FT                   IINHRVSPPRLGHAFSLHGLTGNLGWALTPVFITTITLLASWRVAAFSAAALVAVVLLM
FT                   TVIGRDLLGGAAPAEAGGKSAARPAAQESVWQTLAALLARPALWGAFLFFACTSIALSS
FT                   VQNYTIPLLGQLYDLSKVAASSALSGYMVASALGMAAGGFLVSANPRTELTVTAALIMA
FT                   GLTLVVLAMGWVPAGWAALVVGLAGFCSGVAAPSRDMLIRRVTPKGATGSVYGLVYSGM
FT                   DVGSALGPLGFGLLLDAGMAHGPWVGAGVAFAAAALLAQWIAMQARRTA"
FT   misc_feature    150407..151633
FT                   /note="HMMPfam hit to PF00083, Sugar (and other)
FT                   transporter, score 0.012"
FT   misc_feature    join(150455..150523,150560..150628,150647..150700,
FT                   150713..150766,150824..150892,150902..150970,
FT                   151088..151156,151199..151267,151286..151354,
FT                   151364..151432,151469..151537,151550..151618)
FT                   /note="12 probable transmembrane helices predicted for
FT                   BPP1767 by TMHMM2.0 at aa 54-76, 89-111, 118-135, 140-157,
FT                   177-199, 203-225, 265-287, 302-324, 331-353, 357-379,
FT                   392-414 and 419-441"
FT   misc_feature    151001..151024
FT                   /note="PS00687 Aldehyde dehydrogenases glutamic acid active
FT                   site."
FT   CDS             complement(151649..152470)
FT                   /transl_table=11
FT                   /locus_tag="BPP1768"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2084"
FT                   /db_xref="GOA:Q7W9J1"
FT                   /db_xref="InterPro:IPR001474"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9J1"
FT                   /protein_id="CAE37069.1"
FT                   /translation="MSLSNAPLGQHVAYPSQYDPGLLFPIPRATNRASLQLGATLPFTG
FT                   VDLWNAYELSWLDARGKPRVAMATFSFPADSPNIVESKSFKLYLNSFNQTRLPNAQALR
FT                   DRLERDLAAAAGAPVGLKFISPQRFGELNMAELDGIYIDKLDIEIDTYEPAPQLLQCAP
FT                   GDEVEETLATRLLKSNCPVTGQPDWASLQVRYRGRPIDRAALLKYVVSFRQHAEFHEHC
FT                   VERIFGDIMRACQPRQLTVYARYTRRGGLDINPWRSNFESAPPADVRTARQ"
FT   CDS             152789..154111
FT                   /transl_table=11
FT                   /gene="aceA"
FT                   /locus_tag="BPP1769"
FT                   /product="putative isocitrate lyase"
FT                   /EC_number="4.1.3.1"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2085"
FT                   /db_xref="GOA:Q7W9J0"
FT                   /db_xref="HSSP:1IGW"
FT                   /db_xref="InterPro:IPR018523"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9J0"
FT                   /protein_id="CAE37070.1"
FT                   /translation="MSNRETEIRNLQKDWAENTRWQGIKRAYSAEDVIRLRGSVAVEHS
FT                   LARRGATRLWDSLHSEPFVNSLGALTGNQAMQQVKAGLKAIYLSGWQVAGDANLAGEMY
FT                   PDQSLYPANSVPQVVRRINNALARCDQIQWMEGKNPGDQDYIDYYAPIVADAEAGFGGV
FT                   LNAFELMKAMIEAGAAGVHFEDQLASVKKCGHMGGKVLVPTREAVSKLVSARLAADVMG
FT                   TPTILLARTDADAADLVTSDVDENDRPFITGERTVEGFFRTRAGLDQAISRGLAYAPYA
FT                   DLIWCETSTPNLEYARKFAEAVHRQFPGKLLAYNCSPSFNWKKNLDDGTIAKFQRELGA
FT                   MGYKFQFITLAGFHALNYGMFELAHGYARRQMSAFVELQQKEFAAAELGFTAVKHQREV
FT                   GTGYFDAVTQTIEGGQSSTTALTGSTEEAQFEHGGQAVKAA"
FT   misc_feature    152807..154078
FT                   /note="HMMPfam hit to PF00463, Isocitrate lyase family,
FT                   score 2.9e-245"
FT   misc_feature    153359..153376
FT                   /note="PS00161 Isocitrate lyase signature."
FT   CDS             154475..155197
FT                   /transl_table=11
FT                   /locus_tag="BPP1770"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2086"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9I9"
FT                   /protein_id="CAE37071.1"
FT                   /translation="MACFMALVLARFGFGFCMLLAALVLLAAATLLATRLVGWAVRAFA
FT                   LERSQALASGVAIFILVALALWGCHAVGEVLYGAIGATALVGGAPHWLAGNSHVSAAAL
FT                   MGATTAAAMLAGGPAFWRWLRARRAAAAEQPAPRKAAPPKGAKPAARAAKAAAKTQIAP
FT                   RGQRIPWLGWTAFFLLFIGAAVLAFAYIVAPIEAGASGLRLEHATRARPVYLAGLTLLG
FT                   GGAFFLLAWLSRRRLPGD"
FT   misc_feature    154475..154555
FT                   /note="Signal peptide predicted for BPP1770 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.997) with cleavage site
FT                   probability 0.688 between residues 27 and 28"
FT   misc_feature    join(154508..154576,154619..154678,154697..154756,
FT                   154769..154837,154985..155053,155111..155170)
FT                   /note="6 probable transmembrane helices predicted for
FT                   BPP1770 by TMHMM2.0 at aa 12-34, 49-68, 75-94, 99-121,
FT                   171-193 and 213-232"
FT   CDS             complement(155208..155951)
FT                   /transl_table=11
FT                   /locus_tag="BPP1771"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2160"
FT                   /db_xref="GOA:Q7W9I8"
FT                   /db_xref="InterPro:IPR007300"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9I8"
FT                   /protein_id="CAE37072.1"
FT                   /translation="MPDFVNLWIYLSSTPLFGLTATLTVYLSAHAMYLRLGQVPLANPV
FT                   LWSMVVLAAGLLAFGVPYPTYFAGAQFIHFLLGPAVVALAWPLWMRRAELRRRWARLLW
FT                   AALFGGAVACASAVLLGWAVGLPRDIILSLAPKSVTAPVAMGLSETLGGIPALSAVFAA
FT                   LTGLVGALTGKYLFDLLGAVRGRQDWADRGFALGTVSHGIGAARAIQVNADAGAYAGLA
FT                   LGLQVILASLLIPVAFRLAAGLGGS"
FT   misc_feature    complement(join(155238..155303,155421..155486,
FT                   155580..155645,155685..155750,155769..155834,
FT                   155871..155936))
FT                   /note="6 probable transmembrane helices predicted for
FT                   BPP1771 by TMHMM2.0 at aa 5-27, 39-61, 67-89, 102-124,
FT                   155-177 and 216-238"
FT   misc_feature    complement(155610..155642)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(155944..156303)
FT                   /transl_table=11
FT                   /locus_tag="BPP1772"
FT                   /product="putative integral membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2161"
FT                   /db_xref="GOA:Q7W9I7"
FT                   /db_xref="InterPro:IPR005538"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9I7"
FT                   /protein_id="CAE37073.1"
FT                   /translation="MQALTGFTWLLALQALGEACSRLLHFPIPGPVTGMLLLLVALRWP
FT                   LVREPVALAAQFLLSHLSLLFVPVGVGVMTHIALLAEYGLRMAAVIALSTLAGMAATYW
FT                   ALRVGRSAAPETDDA"
FT   misc_feature    complement(join(155986..156051,156067..156132,
FT                   156169..156234))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BPP1772 by TMHMM2.0 at aa 23-45, 57-79 and 84-106"
FT   CDS             complement(156291..157727)
FT                   /transl_table=11
FT                   /locus_tag="BPP1773"
FT                   /product="putative biotin synthesis protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2162"
FT                   /db_xref="GOA:Q7W9I6"
FT                   /db_xref="HSSP:1DAI"
FT                   /db_xref="InterPro:IPR013217"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9I6"
FT                   /protein_id="CAE37074.1"
FT                   /translation="MSTRSTPTIGQRFDRAAARYETHAEVQRHAAEQLAERIAALPLPA
FT                   EPRILEIGCGTGLLTRALARRLGRADWTITDIAPAMLAAQQAGPPPAGRVRHQLVDGEH
FT                   PAGLPGGYDLICSSLAVQWFGDLDAGLARLAGLLAPGGLLAIATLAEHTFSEWRAAHQA
FT                   HGLHAATPAYPPAERIGRTLAGLRGGITREAYRQRHPDALHFVRSLKAIGASAPAAGHA
FT                   PLSPAAFRRVLAQFDRQGNHVTYDLAYGLWRKQAPGVFVTGTDTGVGKTLVSAILARAW
FT                   RAHYWKPLQTGVAEEPGDTETVAALAGLEPARLHPPAHVLQAPLSPWAAAPLEGVTLDA
FT                   AAIAPPQVDGPLVVEGAGGLYVPIDERHMMIDLIARLGMPVVLAARSGLGTINHTLLSL
FT                   HALRERRLPVLGVIMLGEPSAGNRHAIEHFGGVPVLAQIPRLARVDAEAVEAWAARIPP
FT                   LADCLARRWPDTQETPACRP"
FT   misc_feature    complement(156387..156956)
FT                   /note="HMMPfam hit to PF01656, Cobyrinic acid a,c-diamide
FT                   synthase, score 0.0062"
FT   CDS             complement(157724..158377)
FT                   /transl_table=11
FT                   /locus_tag="BPP1774"
FT                   /product="hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2163"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9I5"
FT                   /protein_id="CAE37075.1"
FT                   /translation="MSAPRPLLRFEHGWAHDAGVWAPLRAALADWPQQAADAGYFGPAV
FT                   EPPPDGAPVVAIGHSLGFLKILQSPAPGCIAYIAINGFARFAGGADYPPGVAPRLLERM
FT                   LARLELDPAAVVDDFRRRAGSAPHAGTPRPEPLRHDLRRLREADERQALAASRLPLLAL
FT                   AGTADPIVAPALTRAQFGACAGLRWRDGGGHLLPTSDPDWCAGRIRAFLAGLPA"
FT   CDS             complement(158374..159567)
FT                   /transl_table=11
FT                   /locus_tag="BPP1775"
FT                   /product="putative 8-amino-7-oxononanoate synthase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2164"
FT                   /db_xref="GOA:Q7W9I4"
FT                   /db_xref="HSSP:1BS0"
FT                   /db_xref="InterPro:IPR015421"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9I4"
FT                   /protein_id="CAE37076.1"
FT                   /translation="MSKLDSLFTAALEQAAQRQVRRRLRRATAAPPGRLALDGRTLVNF
FT                   SSNDYLGLARHPLLAERASLWATRHGAGAQASRLVCGNLDLHEQVEAKLARLKGTEAAL
FT                   LLASGWQANAAVLPALFKAAAAQGEPQVYTDRLNHASLHHGCQAAGVRQIRFRHNDLAH
FT                   LEHLLAERAGAPGARFIVTESVFSMDGDRADVPALAALAARHHTFLYLDEAHATGVLGP
FT                   RGMGLAGLAPGGVDLAMGTFSKGLGSFGAYVAGSRALCDYLVNACSGFIYTTALPPAVL
FT                   GAIDAALDLVPRLDQARAALLGHGERLRASLAAQGIDCGASSTQIVPAIVGDAGHALAL
FT                   AAELERRGLLAVAIRPPTVPAGTSRLRIALSAAHGETELDQLIEALAAGWRAVRQAA"
FT   misc_feature    complement(158407..159354)
FT                   /note="HMMPfam hit to PF00155, Aminotransferase class I and
FT                   II, score 1.6e-31"
FT   misc_feature    complement(158818..158847)
FT                   /note="PS00599 Aminotransferases class-II
FT                   pyridoxal-phosphate attachment site."
FT   CDS             159671..160945
FT                   /transl_table=11
FT                   /gene="bioA"
FT                   /locus_tag="BPP1776"
FT                   /product="adenosylmethionine-8-amino-7-oxononanoate
FT                   aminotransferase"
FT                   /EC_number="2.6.1.62"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2165"
FT                   /db_xref="GOA:Q7W9I3"
FT                   /db_xref="HSSP:1DTY"
FT                   /db_xref="InterPro:IPR015421"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9I3"
FT                   /protein_id="CAE37077.1"
FT                   /translation="MSDTTPAWMAQGYPHIWLPYAQMKTAAPPLPVVRSHGSLLELADG
FT                   RTLIDGVASWWTACHGYNHPHIAQAVREQLDRMPHVMFGGLAHEPALNLASRLSALLGP
FT                   GLERVFYTDSGSVAVEVAMKMAVQFWLNQGERGRTRFVAFRGGYHGDTFGTMAVCDPDE
FT                   GMHAMFRGLLPEHDVLALPRDEAALAALQAHLERHAGRIAGMLVEPLVQGAGGMLLHDP
FT                   QVLARLRELADRYGILLIFDEIFTGFGRTGTMFAFEQAGVRPDIITLSKALTGGTLPLA
FT                   ATVASARVFEGFWSDDPGHALMHGPTFMGCALACAAANASLDLFEREPRLRQVAALEQA
FT                   LRAGLEPCRDLPWVRDVRVLGAIGVIELDGIGARDDLRRRLVDAGVWVRPFGNIVYLTP
FT                   AFTIAEDELQALLAAVRQVVAERRP"
FT   misc_feature    159731..160939
FT                   /note="HMMPfam hit to PF00202, Aminotransferase class-III,
FT                   score 5.3e-145"
FT   misc_feature    160385..160498
FT                   /note="PS00600 Aminotransferases class-III
FT                   pyridoxal-phosphate attachment site."
FT   CDS             join(161010..161750,161754..161984)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP1777"
FT                   /product="putative membrane protein (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2167"
FT                   /db_xref="PSEUDO:CAE37078.1"
FT   misc_feature    join(161082..161150,161193..161261,161322..161375,
FT                   161547..161606,161625..161693,161838..161906)
FT                   /note="6 probable transmembrane helices predicted for
FT                   BPP1777 by TMHMM2.0 at aa 25-47, 62-84, 105-122, 180-199,
FT                   206-228 and 277-299"
FT   variation       161751..161753
FT                   /note="In-frame TAA stop codon in parapertussis; CAA in
FT                   pertussis"
FT   CDS             161981..162124
FT                   /transl_table=11
FT                   /locus_tag="BPP1778"
FT                   /product="putative outer membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2168"
FT                   /db_xref="InterPro:IPR004714"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9I2"
FT                   /protein_id="CAE37079.1"
FT                   /translation="MSILYLLLPLSLAFVLAIGVALWWAVFSGQYDDTEDQGAAILRDN
FT                   DN"
FT   misc_feature    161981..162064
FT                   /note="Signal peptide predicted for BPP1778 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.973) with cleavage site
FT                   probability 0.394 between residues 28 and 29"
FT   misc_feature    161981..162118
FT                   /note="HMMPfam hit to PF03597, Cytochrome oxidase
FT                   maturation protein cbb3-type, score 3.1e-10"
FT   misc_feature    161993..162061
FT                   /note="1 probable transmembrane helix predicted for BPP1778
FT                   by TMHMM2.0 at aa 5-27"
FT   CDS             162165..163736
FT                   /transl_table=11
FT                   /locus_tag="BPP1779"
FT                   /product="probable cytochrome C oxidase subunit"
FT                   /EC_number="1.9.3.1"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2169"
FT                   /db_xref="GOA:Q7W9I1"
FT                   /db_xref="InterPro:IPR004677"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9I1"
FT                   /protein_id="CAE37080.1"
FT                   /translation="MTQIKASRRTGPHHPSWRNTVFSFGGWLMNDCSAIASKAETFNYK
FT                   VVRQFAIMTVVWGIVGMAVGVLIAAQLIWPQLNFDTAWLSYGRLRPLHTNAVIFAFGGS
FT                   ALFATSYYVVQRTCQARLFCDKLAAFTFWGWQAVIVAAAITLPMGFTSSKEYAELEWPI
FT                   DILITLVWVAYAVVFFGTIVKRRSRHIYVANWFFGSYILTIAILHIFNNIEMPVTLWKS
FT                   YSAYAGVQDAMVQWWYGHNAVGFFLTTSFLGMMYYFVPKQAGRPIYSYRLSIVHFWALA
FT                   FTYMWAGPHHLLYTSLPDWTQSLGMTFSLILLAPSWGGMINGIMTLQGAWHKLRTDPIL
FT                   KFLVTALSFYGMSTFEGSMMSIRTVNSLSHYTDWTIGHVHSGALGWVAMITFGSLYYLI
FT                   PRLYGRQQMHSVRAMELHFWVATIGVVLYIAAMWIAGVQQGLMWRDTAADGTLVYSFVE
FT                   ELKTRVPYYVIRLAGGILYLGGVFVMAWNVWMTVRGARAVNPAIPLENDNRATAPAGVP
FT                   AAVPAV"
FT   misc_feature    162210..163559
FT                   /note="HMMPfam hit to PF00115, Cytochrome C and Quinol
FT                   oxidase polypeptide I, score 1.7e-73"
FT   misc_feature    join(162327..162395,162438..162506,162543..162602,
FT                   162645..162713,162732..162800,162873..162941,
FT                   162978..163046,163074..163142,163179..163247,
FT                   163290..163358,163416..163475,163563..163631)
FT                   /note="12 probable transmembrane helices predicted for
FT                   BPP1779 by TMHMM2.0 at aa 55-77, 92-114, 127-146, 161-183,
FT                   190-212, 237-259, 272-294, 304-326, 339-361, 376-398,
FT                   418-437 and 467-489"
FT   misc_feature    162870..163037
FT                   /note="PS00077 Heme-copper oxidase catalytic subunit,
FT                   copper B binding region signature."
FT   CDS             163747..164409
FT                   /transl_table=11
FT                   /locus_tag="BPP1780"
FT                   /product="probable cytochrome C oxidase subunit"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2170"
FT                   /db_xref="GOA:Q7W9I0"
FT                   /db_xref="InterPro:IPR009056"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9I0"
FT                   /protein_id="CAE37081.1"
FT                   /translation="MAQKQHGFFSHQTLEKNIGLMIIASILVVSVAGLVQIIPLFFQHS
FT                   TTQAMPGVEPYEPLQLMGRDVYIREGCVGCHSQQVRTLQAEVQRYGPYSVAGESVFDHP
FT                   FLWGSKRTGPDLARVGERYSDEWHRIHLRDPRAVVPESNMPAYPWLQHADLTGQNVAQR
FT                   MQALRRLGVPYTDEAIAAAPAAIAGKTEEDALVAYLQALGVGARRGAASEPQRAAGG"
FT   misc_feature    163777..164391
FT                   /note="HMMPfam hit to PF02433, Cytochrome C oxidase,
FT                   mono-heme subunit/FixO, score 6e-94"
FT   misc_feature    163804..163872
FT                   /note="1 probable transmembrane helix predicted for BPP1780
FT                   by TMHMM2.0 at aa 20-42"
FT   misc_feature    163960..163977
FT                   /note="PS00190 Cytochrome c family heme-binding site
FT                   signature."
FT   CDS             164412..164588
FT                   /transl_table=11
FT                   /locus_tag="BPP1780A"
FT                   /product="cytochrome C oxidase subunit"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2171"
FT                   /note="Similar to Pseudomonas stutzeri cytochrome c oxidase
FT                   subunit CcoQ SWALL:AAM76066 (EMBL:AF521004) (62 aa) fasta
FT                   scores: E(): 0.0026, 38.88% id in 54 aa, and to Ralstonia
FT                   solanacearum hypothetical signal peptide protein Rsc1278 or
FT                   Rs02816 SWALL:Q8XZW7 (EMBL:AL646063) (60 aa) fasta scores:
FT                   E(): 4.4e-07, 55.55% id in 45 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9H9"
FT                   /protein_id="CAE37082.1"
FT                   /translation="MMGYLSALITVLSMGTFLGIVWWAWSSHRQSANRESALLPFALPD
FT                   EDGHAQQDGAMQP"
FT   CDS             164585..165523
FT                   /transl_table=11
FT                   /locus_tag="BPP1781"
FT                   /product="putative cytochrome C oxidase subunit"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2172"
FT                   /db_xref="GOA:Q7W9H8"
FT                   /db_xref="InterPro:IPR009056"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9H8"
FT                   /protein_id="CAE37083.1"
FT                   /translation="MSDFVNGFWSYFIGIIAIGGIVWCVWLLYSQRRWLSTRPAGGVVE
FT                   DTGHVWDGDLTELNNPVPRWWTWMYLLTCVFALGYLVLFPGVGSYQGTLGYTSVGEVKQ
FT                   KQAELAERVKPVYERFGGMTPEQLVADAPAREIGQRLFLNTCAQCHGSDAKGSTSFPNL
FT                   TDGDWLYGGTPEIIAETIAKGRHGVMPPWKGVIDPRMAGDIAHYVRSLSGLAVDPVRVF
FT                   RGKREFANYCVACHGVDAKGNQALGAPNLTDDVWLYGSSEASIVRTILDGRDNRMPAHE
FT                   EVLTPEQIKLLSAWVWGLSNQAPAKAAEAAR"
FT   misc_feature    join(164603..164671,164777..164845)
FT                   /note="2 probable transmembrane helices predicted for
FT                   BPP1781 by TMHMM2.0 at aa 7-29 and 65-87"
FT   misc_feature    164972..165220
FT                   /note="HMMPfam hit to PF00034, Cytochrome c, score 0.0013"
FT   misc_feature    165020..165037
FT                   /note="PS00190 Cytochrome c family heme-binding site
FT                   signature."
FT   misc_feature    165230..165484
FT                   /note="HMMPfam hit to PF00034, Cytochrome c, score 0.0066"
FT   misc_feature    165278..165295
FT                   /note="PS00190 Cytochrome c family heme-binding site
FT                   signature."
FT   CDS             join(165534..165854,165858..166922,166925..167107)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP1782"
FT                   /product="putative ferredoxin (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2173"
FT                   /db_xref="PSEUDO:CAE37084.1"
FT   misc_feature    165534..165635
FT                   /note="Signal peptide predicted for BPP1782 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.971) with cleavage site
FT                   probability 0.521 between residues 34 and 35"
FT   misc_feature    join(165774..165842,165921..165989,166146..166205,
FT                   166248..166307,166686..166745)
FT                   /note="5 probable transmembrane helices predicted for
FT                   BPP1782 by TMHMM2.0 at aa 81-103, 130-152, 205-224, 239-258
FT                   and 385-404"
FT   variation       165855..165857
FT                   /note="In-frame TAG stop codon in parapertussis; CAG in
FT                   pertussis"
FT   misc_feature    166446..166517
FT                   /note="HMMPfam hit to PF00037, 4Fe-4S binding domain, score
FT                   0.045"
FT   misc_feature    166467..166502
FT                   /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding
FT                   region signature."
FT   misc_feature    166539..166574
FT                   /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding
FT                   region signature."
FT   CDS             167136..167345
FT                   /transl_table=11
FT                   /locus_tag="BPP1783"
FT                   /product="putative lipoprotein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2174"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9H7"
FT                   /protein_id="CAE37085.1"
FT                   /translation="MTDTPAARPWYREPWPWILMAGPLVAIIGCVITIYLAMTRYGDQP
FT                   IAEGAVKRGLVVERVAAPAADARR"
FT   misc_feature    167178..167246
FT                   /note="1 probable transmembrane helix predicted for BPP1783
FT                   by TMHMM2.0 at aa 15-37"
FT   misc_feature    167193..167225
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             167359..167598
FT                   /transl_table=11
FT                   /locus_tag="BPP1784"
FT                   /product="putative inner membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2175"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9H6"
FT                   /protein_id="CAE37086.1"
FT                   /translation="MRWRSLMWILWPSFLAAGVGSALIFALIDPLDVAIFGQVPTSRTG
FT                   FYTVSFFVLWLVTALSSTVTAYLMPPGDQDEAPF"
FT   misc_feature    167359..167436
FT                   /note="Signal peptide predicted for BPP1784 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.982) with cleavage site
FT                   probability 0.623 between residues 26 and 27"
FT   misc_feature    join(167377..167445,167488..167556)
FT                   /note="2 probable transmembrane helices predicted for
FT                   BPP1784 by TMHMM2.0 at aa 7-29 and 44-66"
FT   CDS             167694..168437
FT                   /transl_table=11
FT                   /locus_tag="BPP1785"
FT                   /product="putative inner membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2176"
FT                   /db_xref="GOA:Q7W9H5"
FT                   /db_xref="InterPro:IPR018130"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9H5"
FT                   /protein_id="CAE37087.1"
FT                   /translation="MDALHVVVVAGAVLAGFVQGLSGFGYGLTAMSVWAWSIDPRLAAA
FT                   LVVFGSLTGQLIAAFSVRRGFDWRRLLPFLLGGLVGIPIGVRILPMLDVHMFKALLGGF
FT                   LVLWCPLMLAVKYLPRITAGGRLADAVVGGLGGVMGGIGGFTGTLPTLWCTLRGFARDE
FT                   QRSIIQNFNLGTLLVTMATYVGTGIVTADMLPLFGLVALAMLIPTVLGTRLYLGISDQA
FT                   FRRIVLGLLTLSGVAMLASSLPRLL"
FT   misc_feature    167694..167798
FT                   /note="Signal peptide predicted for BPP1785 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.615) with cleavage site
FT                   probability 0.450 between residues 35 and 36"
FT   misc_feature    join(167706..167774,167817..167885,167904..167960,
FT                   167988..168047,168081..168149,168192..168260,
FT                   168273..168341,168369..168422)
FT                   /note="8 probable transmembrane helices predicted for
FT                   BPP1785 by TMHMM2.0 at aa 5-27, 42-64, 71-89, 99-118,
FT                   130-152, 167-189, 194-216 and 226-243"
FT   misc_feature    168309..168344
FT                   /note="PS00962 Ribosomal protein S2 signature 1."
FT   CDS             168446..168970
FT                   /transl_table=11
FT                   /locus_tag="BPP1786"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2177"
FT                   /db_xref="GOA:Q7W9H4"
FT                   /db_xref="InterPro:IPR016181"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9H4"
FT                   /protein_id="CAE37088.1"
FT                   /translation="MAGAAGGPMLIRSETPADQRAIFDVTQAAFRGHPHSEQTEAYIVQ
FT                   ALRAAGALTLSLVAELDARVVGHAAFSPVQISDGSPSWFGLGPVSVDPAHQGRGIGTAL
FT                   IEHGLARLQARGAAGCVLVGEPAYYGRFGFRPEPGLVLPDMPPTHFLALTFGAPARGTV
FT                   TYHPGFAARDA"
FT   misc_feature    168614..168850
FT                   /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT)
FT                   family, score 1.6e-14"
FT   CDS             168997..169992
FT                   /transl_table=11
FT                   /locus_tag="BPP1787"
FT                   /product="putative ABC transporter, ATP-binding subunit"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2178"
FT                   /db_xref="GOA:Q7W9H3"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9H3"
FT                   /protein_id="CAE37089.1"
FT                   /translation="MLACSGARPAGRIGHPVLFLQGDAVQAVISVQGLSKTYASGHPAL
FT                   KNINLDIHRGEIFALLGPNGAGKTTLISIICGIVNPGSGRVLADGHDIVREFRAARDAI
FT                   GLVPQELTTDAFETVWNTVSFSRGLFGKPADPALIERILRDLSLWDKKDSRIMALSGGM
FT                   KRRVMIAKALSHEPRILFLDEPTAGVDVELRHGMWQMVLRLRENGVTIILTTHYIEEAQ
FT                   EMADRIGVIRKGEIILVEDKHALMSKLGKKQLVIMLDAPLAALPALAGDSQLELAAEGT
FT                   QLVYTYDNQVSGGIAALLRELDARGIGFHDLQSSESSLEDIFVSLVSAQT"
FT   misc_feature    169159..169698
FT                   /note="HMMPfam hit to PF00005, ABC transporter, score
FT                   1.5e-55"
FT   misc_feature    169180..169203
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    169471..169515
FT                   /note="PS00211 ABC transporters family signature."
FT   CDS             169989..170750
FT                   /transl_table=11
FT                   /locus_tag="BPP1788"
FT                   /product="putative ABC transporter inner membrane subunit"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2179"
FT                   /db_xref="GOA:Q7W9H2"
FT                   /db_xref="InterPro:IPR013526"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9H2"
FT                   /protein_id="CAE37090.1"
FT                   /translation="MNWYAIKAIYKFEMARAWRTLMQSVASPVISTSLYFVVFGAAIGS
FT                   HMVEIDGVSYGAFIVPGMIMLSLLTQSVANASFGIYMPRFSGTIYEIHSAPISYVEIVL
FT                   GYVGAAASKSILLGLIMLATARLFVPFHIDHPVWMLAFLVLTAVTFSLFGFIIGIWADG
FT                   FEKLQIIPLMIITPLTFLGGTFYSIKMLPPFWQTVTLFNPVVYLVSGFRWAFYGSADVS
FT                   LGVSLGMTLAFLLVCLLTVRWIFRTGYRLKT"
FT   misc_feature    170019..170738
FT                   /note="HMMPfam hit to PF01061, ABC-2 type transporter,
FT                   score 0.0051"
FT   misc_feature    join(170049..170117,170160..170228,170289..170357,
FT                   170400..170468,170487..170555,170568..170636,
FT                   170655..170723)
FT                   /note="7 probable transmembrane helices predicted for
FT                   BPP1788 by TMHMM2.0 at aa 21-43, 58-80, 101-123, 138-160,
FT                   167-189, 194-216 and 223-245"
FT   CDS             complement(170766..171851)
FT                   /transl_table=11
FT                   /locus_tag="BPP1789"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2180"
FT                   /db_xref="InterPro:IPR002549"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9H1"
FT                   /protein_id="CAE37091.1"
FT                   /translation="MMQTESNPLAERFIARNLLDLAIRITLIGGLTVWCYRVAEPFIGM
FT                   LLWSIILAVTLAPLHMRLTRLLGARPRLAAVVLTLATMLVLLVPGAMLTASLGDSLVNI
FT                   FHHSTGRIVRIPAPPDFVIELPLIGVRLHEIWLQAMTNLQDVLKPLQPHLATAGRWLLA
FT                   GMASAGLGIAVFLASIAIAGVILVYADPAKRAAHAIGVRIAGPEQGVALAQLTAATIRA
FT                   VAQGVIGVALIQAVLAGLGFLLAGVPAAGLWAIVALLICIVQLPLFLLMVPMVVYVFLN
FT                   NTPTVAAVFAVWCLLVSLCDNVLKPLMLARGVDIPIPVILIGALGGVLAAGIVGLFLGS
FT                   VGFGLGYVLFMQWVRQQSPAG"
FT   misc_feature    complement(170790..171797)
FT                   /note="HMMPfam hit to PF01594, Domain of unknown function
FT                   DUF20, score 8.3e-08"
FT   misc_feature    complement(join(170805..170906,170952..171017,
FT                   171039..171104,171117..171182,171288..171353,
FT                   171567..171632,171669..171725,171738..171788))
FT                   /note="8 probable transmembrane helices predicted for
FT                   BPP1789 by TMHMM2.0 at aa 21-38, 42-61, 73-95, 166-188,
FT                   223-245, 249-271, 278-300 and 315-349"
FT   CDS             complement(171949..174024)
FT                   /transl_table=11
FT                   /locus_tag="BPP1790"
FT                   /product="probable signalling protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein Pa1727 SWALL:Q9I310 (EMBL:AE004599) (685 aa) fasta
FT                   scores: E(): 6.3e-169, 65% id in 683 aa, and to Ralstonia
FT                   solanacearum probable transmembrane protein Rsc0510 or
FT                   Rs04997 SWALL:Q8Y226 (EMBL:AL646059) (701 aa) fasta scores:
FT                   E(): 8.7e-166, 65.15% id in 683 aa"
FT                   /db_xref="InterPro:IPR005330"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9H0"
FT                   /protein_id="CAE37092.1"
FT                   /translation="MLVGNYDATLVLTSLFVAILASYTALGMAGRVAASRGVAARVWLG
FT                   GGAFAMGLGIWSMHFIGMLAFSLPIPLGYDVALTVASMALAVACSAFALWVVTRATLPW
FT                   RRLAGAAALMGTGIAAMHYTGMAAMRMHPAIEYSPALFMLSVAVAIVASGAALWITHAL
FT                   RHNRPGAPAYRICAAIVMGLAIVGMHYTGMAAANFPQGSVCMAANSGISAGWLAVSTAA
FT                   VTLAVLAVALVVAVLDTRLETRTSALNASLAQANEELVQMALHDTLTKLPNRALLDERL
FT                   KQAIIRATAAGRGFSLLFIDLDGFKAINDAYGHGAGDLLLVEMAQRIKRAMRPQDCVAR
FT                   LGGDEFVVLADLPDPNDAAGLAERLIDTLTVPAEVQGHEVSVAASIGIALFPGDGADAS
FT                   TLLAHADAAMYHAKRLSQTHRVSFFEPSMNEDALEQLQLLQDLRLALPRNQLELHYQPK
FT                   FVAPAGPVVGAEALLRWNHPTRGVIGPTVFIPIAERTGLIFSIGAWVLDEACRQMRQWR
FT                   DMGHADWTVAVNLSSLQFSQPDLIDSIRATLARHDLPPRCLAIEITESTAMRDAEASLT
FT                   VLRELAELGVSISIDDFGTGYSSLLYLKRLPATELKIDRGFVNQLEHDNEDAAIVSAII
FT                   ALGQKLNLKIVAEGVETLAQQSFLTEMGCDSLQGFLLGRPLPAAEFLAHTLQPQLA"
FT   misc_feature    complement(171985..172725)
FT                   /note="HMMPfam hit to PF00563, EAL domain, score 6.9e-124"
FT   misc_feature    complement(172768..173250)
FT                   /note="HMMPfam hit to PF00990, GGDEF domain, score 7.4e-59"
FT   misc_feature    complement(173281..173484)
FT                   /note="HMMPfam hit to PF03707, Bacterial signalling protein
FT                   N terminal repeat, score 1.2e-07"
FT   misc_feature    complement(join(173314..173379,173440..173505,
FT                   173542..173607,173638..173703,173731..173796,
FT                   173842..173907,173929..173994))
FT                   /note="7 probable transmembrane helices predicted for
FT                   BPP1790 by TMHMM2.0 at aa 10-32, 39-61, 76-98, 107-129,
FT                   139-161, 173-195 and 215-237"
FT   misc_feature    complement(173491..173685)
FT                   /note="HMMPfam hit to PF03707, Bacterial signalling protein
FT                   N terminal repeat, score 1.6e-15"
FT   misc_feature    complement(173686..173874)
FT                   /note="HMMPfam hit to PF03707, Bacterial signalling protein
FT                   N terminal repeat, score 3e-22"
FT   misc_feature    complement(173926..174024)
FT                   /note="Signal peptide predicted for BPP1790 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.660) with cleavage site
FT                   probability 0.228 between residues 33 and 34"
FT   CDS             complement(174147..175037)
FT                   /transl_table=11
FT                   /locus_tag="BPP1791"
FT                   /product="probable LysR-family transcriptional regulator"
FT                   /note="Similar to Yersinia pestis probable LysR-family
FT                   transcriptional regulator Ypo1929 SWALL:Q8ZF22
FT                   (EMBL:AJ414150) (292 aa) fasta scores: E(): 3.7e-46, 47.73%
FT                   id in 287 aa, and to Salmonella typhimurium putative
FT                   transcriptional regulator Stmr or Stm3121 SWALL:Q9RQ20
FT                   (EMBL:AF134978) (292 aa) fasta scores: E(): 2.2e-45, 45.2%
FT                   id in 292 aa"
FT                   /db_xref="GOA:Q7W9G9"
FT                   /db_xref="HSSP:1IXC"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9G9"
FT                   /protein_id="CAE37093.1"
FT                   /translation="MELRHLRYFVAVAEDLHFTRAAARLGIGQPPLSLQIQQLEREIGT
FT                   PLLLRQPRGVALTEAGARFLQDARAVLHAAELAVETARRLGHGEQGDIAVGFTASAVFH
FT                   PYLPSAIRAYRDRYPGVRIALSESNARALLAGLRSGEVDVAFVRPPYALDDEFASERVL
FT                   DEPMLVALPPDHPLCRKRTVPVAALAEQDFVLYPRPIGAGLYDAIMQACQRAGFTPRVI
FT                   QEAPQMASIISLVAAGVGIAVVPAAMRHMGAAGIVYRPIRGDAPRALLDMAYRRQPRSA
FT                   AVRHAVELLRGRAHP"
FT   misc_feature    complement(174153..174782)
FT                   /note="HMMPfam hit to PF03466, LysR substrate binding
FT                   domain, score 1.4e-50"
FT   misc_feature    complement(174852..175031)
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family, score 2.3e-27"
FT   CDS             175147..176442
FT                   /transl_table=11
FT                   /locus_tag="BPP1792"
FT                   /product="putative transport protein"
FT                   /note="Similar to Ralstonia solanacearum putative
FT                   transporter transmembrane protein Rsc3069 or Rs00513
FT                   SWALL:Q8XUW4 (EMBL:AL646073) (428 aa) fasta scores: E():
FT                   5.4e-77, 55.34% id in 430 aa, and to Bacillus subtilis
FT                   hypothetical transport protein YybF SWALL:YYBF_BACSU
FT                   (SWALL:P37498) (404 aa) fasta scores: E(): 1.1e-58, 45.17%
FT                   id in 394 aa"
FT                   /db_xref="InterPro:IPR011701"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9G8"
FT                   /protein_id="CAE37094.1"
FT                   /translation="MPPPSAVAATPPTTHAGADPGQPYLRRGTAELHRAQWALFAAGFA
FT                   TFSLLYCVQPLMPLFSQAFAVSPVQSSLSLSLSTVFLALAIFLVGLWAQALPRKAVMAV
FT                   SLFAAATLGTVAAFAPDWHTLLVLRALQGAAMGGVPAVAMAYLAEEVEPDTLGFVMGLY
FT                   ISGSAFGGLTGRVITGFVSDYLGWRAALGALGALGALGLLAAVLFVWLLPASRRFVPRR
FT                   GNGWRDARAGLAAHLCHGRLVALFALAGLQAGAFVTVYNYVGYRLLLPPFSLSQTFIGA
FT                   IFVVYLVGIVASTLFGRLADRHGRGAMLCTATSIAMAGLLLTLSDALSVLVAGIVVFTF
FT                   GFFAAHAVASGWVGQMARGYKAQAASPYLLAYYLSASVLGSVGGGSWSHGGWAGVVALA
FT                   GALLAGAVGLSAWLYRGNPARGAAAAVRPPAA"
FT   misc_feature    175249..176388
FT                   /note="HMMPfam hit to PF00083, Sugar (and other)
FT                   transporter, score 0.0076"
FT   misc_feature    join(175255..175323,175366..175425,175444..175512,
FT                   175522..175590,175609..175677,175714..175782,
FT                   175870..175938,175966..176034,176053..176121,
FT                   176134..176202,176239..176307,176320..176388)
FT                   /note="12 probable transmembrane helices predicted for
FT                   BPP1792 by TMHMM2.0 at aa 48-70, 85-104, 111-133, 137-159,
FT                   166-188, 201-223, 253-275, 285-307, 314-336, 341-363,
FT                   376-398 and 403-425"
FT   CDS             complement(176541..176753)
FT                   /transl_table=11
FT                   /locus_tag="BPP1793"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Pasteurella multocida hypothetical
FT                   protein Pm1568 SWALL:Q9CKP1 (EMBL:AE006194) (70 aa) fasta
FT                   scores: E(): 2.5e-12, 62.68% id in 67 aa, and to
FT                   Campylobacter jejuni hypothetical protein Cj0449C
FT                   SWALL:Q9PI59 (EMBL:AL139075) (71 aa) fasta scores: E():
FT                   3.3e-09, 50% id in 68 aa"
FT                   /db_xref="InterPro:IPR007420"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9G7"
FT                   /protein_id="CAE37095.1"
FT                   /translation="MFPEYRDLISRLKNDDPHFSRLYDKHNNLDQHIQDIEAVRATGTS
FT                   LDIEKLKKEKLHLKDQIYAILKNGA"
FT   CDS             176928..177338
FT                   /transl_table=11
FT                   /locus_tag="BPP1794"
FT                   /product="putative dioxygenase"
FT                   /note="Similar to Pseudomonas aeruginosa probable
FT                   ring-cleaving dioxygenase Pa2546 SWALL:Q9I0T8
FT                   (EMBL:AE004682) (143 aa) fasta scores: E(): 8.6e-24, 56.06%
FT                   id in 132 aa, and to Agrobacterium tumefaciens
FT                   glyoxalase/bleomycin resistance protein/dioxygenase
FT                   superfamily protein Atu1533 or Agr_c_2827 SWALL:AAL42538
FT                   (EMBL:AE009112) (146 aa) fasta scores: E(): 8.2e-14, 42.74%
FT                   id in 131 aa"
FT                   /db_xref="GOA:Q7W9G6"
FT                   /db_xref="InterPro:IPR004360"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9G6"
FT                   /protein_id="CAE37096.1"
FT                   /translation="MFRIKGLDHIVLRVRDVARMRAFYVDVLGCTGEREQAELGLTQLR
FT                   AGSALIDLVALDGKLGRAGGAGPGAQGRNVDHFCLAVEPFDTDAIVAYLRGHGVDVGET
FT                   GMRYGAGGEGPSVYLSDPEGNTVELKGPPTAA"
FT   misc_feature    176964..177332
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF00903, Glyoxalase/Bleomycin
FT                   resistance protein/Dioxygenase superfamily, score 8.2e-06"
FT   CDS             complement(177581..178444)
FT                   /transl_table=11
FT                   /locus_tag="BPP1795"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1178"
FT                   /db_xref="GOA:Q7W9G5"
FT                   /db_xref="InterPro:IPR000620"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9G5"
FT                   /protein_id="CAE37097.1"
FT                   /translation="MPFNQTVWAARGSTALFVLLWSSGAIFAKWGLDYASPFAFLVLRF
FT                   ALALAVLTALGLRTGRCLPAPGTRLRTAATGALLLGGYSICYLLALQHGVTPGVLATVL
FT                   GVQPLLTLLWLERDLPARRLAGLTLALAGLVLVVWRNIDVARLEHAGMAYALAALACMT
FT                   AGALLQKGSRQAPGAVLPLQYATSLALCLALAPGQPWQVQWSPGFVATWLWLALVISVA
FT                   ATLLLYRLIQGDNLVNVTSLFYLVPPGTALLDYLLLGNRPAPASLAGMAAIVAGLGLVF
FT                   GRRRAH"
FT   misc_feature    complement(177599..177967)
FT                   /note="HMMPfam hit to PF00892, Integral membrane protein
FT                   DUF6, score 2.1e-05"
FT   misc_feature    complement(join(177599..177655,177671..177736,
FT                   177758..177823,177854..177919,177941..177994,
FT                   178025..178075,178097..178147,178160..178225,
FT                   178265..178330,178361..178423))
FT                   /note="10 probable transmembrane helices predicted for
FT                   BPP1795 by TMHMM2.0 at aa 7-28, 38-60, 73-95, 99-116,
FT                   123-140, 150-168, 175-197, 207-229, 236-258 and 263-282"
FT   misc_feature    complement(178028..178390)
FT                   /note="HMMPfam hit to PF00892, Integral membrane protein
FT                   DUF6, score 9.2e-06"
FT   misc_feature    complement(178361..178444)
FT                   /note="Signal peptide predicted for BPP1795 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.926) with cleavage site
FT                   probability 0.882 between residues 28 and 29"
FT   CDS             complement(178790..179803)
FT                   /transl_table=11
FT                   /locus_tag="BPP1796"
FT                   /product="LysR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1180"
FT                   /db_xref="GOA:Q7W9G4"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9G4"
FT                   /protein_id="CAE37098.1"
FT                   /translation="MNRRMAAAPRGDGMVGLSDRQPAYSAMYTLKQLEAFYWSAVLGSF
FT                   SASSRKLHTTQSAVAKRVGELEGFAGTPLFERRAKSLVLTQPGRKLFEGAREMLELNSR
FT                   MVLDMADPSRFEGSVRLGVTELVALTSLAGVIERLNQRYPKIQLVPEIEAGITMYQQLE
FT                   RDELDLAIMPGPFWSYEYDCVQLGSVTNVWMASPALALDAARALTPHDLAPFPVISQPQ
FT                   NSALSHLYDAWFAQQGLSVKRVLTCNSLAMMAQLTMLGLGISHLPSAYFDPLVARGALC
FT                   RLRVQPDLPTIHYYAVYKKSLINPVVSTVIDIARETCNFEVEGAFLPLPPGGLRSG"
FT   misc_feature    complement(178847..179470)
FT                   /note="HMMPfam hit to PF03466, LysR substrate binding
FT                   domain, score 5.6e-40"
FT   misc_feature    complement(179537..179716)
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family, score 6.4e-14"
FT   misc_feature    complement(179582..179674)
FT                   /note="PS00044 Bacterial regulatory proteins, lysR family
FT                   signature."
FT   CDS             complement(179838..180575)
FT                   /transl_table=11
FT                   /gene="glnQ"
FT                   /locus_tag="BPP1797"
FT                   /product="amino acids ABC transporter, ATP-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1181"
FT                   /db_xref="GOA:Q7W9G3"
FT                   /db_xref="HSSP:1B0U"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9G3"
FT                   /protein_id="CAE37099.1"
FT                   /translation="MIKLEGVNKWYGEHHVLKDVSLEVGRGEVLVVCGPSGSGKSTLIR
FT                   TINRLEPIGKGVIRIDGQDIHAKGVNINTLRRGIGFVFQQFNLFPHMSVLDNVTYAPLH
FT                   ILKTPRREAEALAHQLLERVGMAHKAQAYPGALSGGQQQRVAIARALALKPPIMLFDEP
FT                   TSALDPEMVGEVLQVMKSLARDGMTMVCVTHEMGFAREVSDRVIFMDAGEILEIATPQR
FT                   FFSAPEHPRAQRFLADIIGHHPA"
FT   misc_feature    complement(179940..180497)
FT                   /note="HMMPfam hit to PF00005, ABC transporter, score
FT                   2.6e-70"
FT   misc_feature    complement(180123..180167)
FT                   /note="PS00211 ABC transporters family signature."
FT   misc_feature    complement(180453..180476)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             complement(180595..181284)
FT                   /transl_table=11
FT                   /locus_tag="BPP1798"
FT                   /product="amino acids ABC transporter, permease protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1182"
FT                   /db_xref="GOA:Q7W9G2"
FT                   /db_xref="InterPro:IPR010065"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9G2"
FT                   /protein_id="CAE37100.1"
FT                   /translation="MLDILHDYWPMLLVGQYPNGPLGGLALTLILALLGLLLSMPLALL
FT                   IAIARVSPFRGLRVASRLLVNTVRGMPLLMLIFWAYFAVPKLTGGSISGFWTLVTALVI
FT                   YESAYLSEVIRSGIEAIPKGQIEASRSLGVGYWTTMRKVVLPQALFNVLPSMTSQFVST
FT                   IKETSLGYVISVNELTFAANQVNNLVLTQPLQVFGILAIIYFLVCFSLSRSVAWLDSWV
FT                   RRSRSMA"
FT   misc_feature    complement(join(180631..180696,181033..181098,
FT                   181138..181203))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BPP1798 by TMHMM2.0 at aa 27-49, 62-84 and 196-218"
FT   misc_feature    complement(180724..180936)
FT                   /note="HMMPfam hit to PF00528, Binding-protein-dependent
FT                   transport systems inner membrane component, score 1e-15"
FT   misc_feature    complement(180847..180933)
FT                   /note="PS00402 Binding-protein-dependent transport systems
FT                   inner membrane comp. sign."
FT   CDS             complement(181277..181966)
FT                   /transl_table=11
FT                   /locus_tag="BPP1799"
FT                   /product="amino acids ABC transporter, permease protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1183"
FT                   /db_xref="GOA:Q7W9G1"
FT                   /db_xref="InterPro:IPR010065"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9G1"
FT                   /protein_id="CAE37101.1"
FT                   /translation="MFFLDAHYLSQLADGMMTTVQLFLVAWVLAFTLAVLLVVIRTTNL
FT                   APCRWFVDAYVEYHRNVPLLVQVLFWYFGMPELLPEGVRGWLYQHNAELSLAAIALGLG
FT                   SAAYIAEDIRSGLRAIPGTQFEAARALGSSYLQCMRHVIVPQALRISIPPLVGRALLLF
FT                   KNTSVAMAIGVVELTYQAREIENETYRTFATFGAATLMYLLGSFLLMFIGSRVYARYNI
FT                   GSGGRRA"
FT   misc_feature    complement(join(181328..181393,181424..181489,
FT                   181847..181912))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BPP1799 by TMHMM2.0 at aa 18-40, 159-181 and 191-213"
FT   misc_feature    complement(181409..181621)
FT                   /note="HMMPfam hit to PF00528, Binding-protein-dependent
FT                   transport systems inner membrane component, score 2.9e-09"
FT   misc_feature    complement(181532..181618)
FT                   /note="PS00402 Binding-protein-dependent transport systems
FT                   inner membrane comp. sign."
FT   CDS             complement(182070..182786)
FT                   /transl_table=11
FT                   /locus_tag="BPP1800"
FT                   /product="probable solute-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1184"
FT                   /db_xref="GOA:Q7W9G0"
FT                   /db_xref="InterPro:IPR018313"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9G0"
FT                   /protein_id="CAE37102.1"
FT                   /translation="MLCGTLGTSQPFSYQDAATRTVVGYDVDMCKLVADKLGVKVNYKL
FT                   LSVAARVPELNESRVDILAANLGYSPERAEQIAFSHTYYVSPQKLLVRKDSNLQTIESV
FT                   NGRRVAATKGSSSEREIKRILDKSQVLGFTDSSASYLALQQKKVDAQFASELVLVRLML
FT                   QSPPTAPVSIIDKAVFDEPWGLGMRKSETRFIAKVNEILDQAEASGEAQRLFEKWFGAQ
FT                   TPYKLQRSFKIGPIAG"
FT   misc_feature    complement(182124..182786)
FT                   /note="HMMPfam hit to PF00497, Bacterial extracellular
FT                   solute-binding proteins, family 3, score 2.6e-57"
FT   misc_feature    complement(182676..182717)
FT                   /note="PS01039 Bacterial extracellular solute-binding
FT                   proteins, family 3 signature."
FT   CDS             complement(182949..184151)
FT                   /transl_table=11
FT                   /gene="aspC"
FT                   /gene_synonym="aatA"
FT                   /locus_tag="BPP1801"
FT                   /product="aspartate aminotransferase"
FT                   /EC_number="2.6.1.1"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1185"
FT                   /db_xref="GOA:Q7W9F9"
FT                   /db_xref="HSSP:1BKG"
FT                   /db_xref="InterPro:IPR015421"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9F9"
FT                   /protein_id="CAE37103.1"
FT                   /translation="MSIVADKIKRIKLSPSVATRAIVAQLREEGRRVIDLTVGEPDFST
FT                   PAHICEAAIAAMQRGETKYPPAQGTMALRKAVRARLREETGVDYPEGHIIVGTGAKQVL
FT                   YNGLAATLNEGDEVIIPAPYWVSYPDMVLVNGGVPVAVTATPATQYKLTPQALEAAITP
FT                   RTKWLMMNAPSNPTGAIYTADEWRGLAEVLRRHPHVWLMTDDIYARLNFTATPTVHPLQ
FT                   VAPELAERTLVVNGVSKAYAMTGWRIGYGAGPEALIKAMAILQSQSTSGACSISQAAAR
FT                   EALAGPQDCVAEFARTFKARRDAAVAALQGAPGLSVVMPEGAFYVFPDCAGVLGKTTPD
FT                   GRVLETDTDFVHYLLREAGVAVIDGTPYGVPGTFRLSFAAALEDIQQGCAAIRAACERL
FT                   A"
FT   misc_feature    complement(182964..183917)
FT                   /note="HMMPfam hit to PF00155, Aminotransferase class I and
FT                   II, score 2.9e-66"
FT   misc_feature    complement(183405..183446)
FT                   /note="PS00105 Aminotransferases class-I
FT                   pyridoxal-phosphate attachment site."
FT   CDS             complement(184148..184828)
FT                   /transl_table=11
FT                   /locus_tag="BPP1802"
FT                   /product="putative aldolase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1186"
FT                   /db_xref="HSSP:1Q5X"
FT                   /db_xref="InterPro:IPR005493"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9F8"
FT                   /protein_id="CAE37104.1"
FT                   /translation="MSSIGFRILPLPEPPAADEVLAGFAQIGTAQISDCMGRLYGVQGL
FT                   RPLHAGAARIVGRAITVKTRPGDNLMIHKAISLAGPGDVIVVDGAGETANALVGELMMM
FT                   DAQSRGVAAFVIDGAVRDLDVFQQGAFGCFARAVSHKGPYKDGPGEINVPVSIGGQVVA
FT                   AGDVIVGDADGVVAVPLAQAGAVLAAARRKEDAELAAKEKLRAGTYAKPWVDRIIAEKT
FT                   GDAQ"
FT   CDS             185465..186349
FT                   /transl_table=11
FT                   /locus_tag="BPP1803"
FT                   /product="hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1188"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9F7"
FT                   /protein_id="CAE37105.1"
FT                   /translation="MQLTKNFVKAKNPCTAGYRWFLRDHNGHGEYQSVLDALVEAGRID
FT                   DAMWLIDQFGPTDQVLNLDTLDAPALVFAGTVTVRRGITVDGVLRAGRNIVCGAGIRAG
FT                   TLVQAGEGIDARGSIACDGDVQAGGDIQTTWGVQVGKRLTVGGQLRAGWDIRTGGDLSV
FT                   VGPIRAGDAVVSGGILKCEQGIRAGQDVQAEYDINVVSGIQAGGSILAGGHVETGWGMI
FT                   AGHDIVADGAIRSGEGLEAGGRIEAGEGHGVYAGLRVRVDAWPDSARVAAARCLGPLLS
FT                   GHWIGAAALDAQA"
FT   CDS             186361..186579
FT                   /transl_table=11
FT                   /locus_tag="BPP1804"
FT                   /product="hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1188A"
FT                   /db_xref="InterPro:IPR019180"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9F6"
FT                   /protein_id="CAE37106.1"
FT                   /translation="MAYPRTMQRLPDQAVAGDPRPQPPEPPEPSDCCQSGCIPCVYDLY
FT                   DEARERYQEALRAWRARHPEAAGGGDA"
FT   CDS             complement(186587..187015)
FT                   /transl_table=11
FT                   /locus_tag="BPP1805"
FT                   /product="lipoprotein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1189"
FT                   /db_xref="InterPro:IPR007298"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9F5"
FT                   /protein_id="CAE37107.1"
FT                   /translation="MKTLLPVLALAALLSACNANAPSDTPEGAPPPDTHTSRNSLDWQG
FT                   TYQGVLPCADCPGIRTVLTLRADNTYQLQTQYLERQPRPDTVQGRFGWLTGDNAIELDS
FT                   AGDHYRYQVGENRLTMMSQDGTLPSGPLAEHYVLKRSQ"
FT   misc_feature    complement(186965..186997)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             187203..187688
FT                   /transl_table=11
FT                   /locus_tag="BPP1806"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1190"
FT                   /db_xref="InterPro:IPR003779"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9F4"
FT                   /protein_id="CAE37108.1"
FT                   /translation="MVRHGGGPPRRNRMKPCMNPYTVAPRTMQALMALQSYVNDCGLEH
FT                   SLLELVKMRASQINGCAFCLNLHYTEARRQGESELRLQLLNAWRESPLYTARERAALAW
FT                   TEALTLLAQTRAPDADYAELATHFDELERVNLTMAINTINAWNRIAVGFRSLHPVNE"
FT   CDS             187681..188586
FT                   /transl_table=11
FT                   /locus_tag="BPP1807"
FT                   /product="putative RNA polymerase sigma factor"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1191"
FT                   /db_xref="GOA:Q7W9F3"
FT                   /db_xref="InterPro:IPR007627"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9F3"
FT                   /protein_id="CAE37109.1"
FT                   /translation="MSKTAAITIDTPGADDFEPHRRHLYGLAYRMLGSWSEAEDIVQET
FT                   WLRWREIDPATLDNARAFLSRIATRLCLDVLKSARVRRQVYVGPWLPEPLPDAQAYAGA
FT                   APGEIAHDVSVALMLALERLSASERAAFLLHDVFDVPFAEIAGTLGRTEAGCRQLAARA
FT                   RNRVRESRPRFAVEESEGIRLARAFIDAAQHGDVDVLRQLLADDAVLHSDGGGKKLAFM
FT                   RPILGRANIVRAFAGLARKGQSDLSSVRIVQLNGMPAIYGIERDGLPRTISLGVCGGRI
FT                   VRVYIMRNPDKLAHLARFTG"
FT   misc_feature    187756..187917
FT                   /note="HMMPfam hit to PF00776, Sigma-70 factor (ECF
FT                   subfamily), score 3.4e-07"
FT   CDS             188731..189057
FT                   /transl_table=11
FT                   /locus_tag="BPP1808"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1192"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9F2"
FT                   /protein_id="CAE37110.1"
FT                   /translation="MKTTHRILAAGLLAALCAAASAAQAQAVQQQYQYPSAPSKDGSQS
FT                   PPSTLRITETPGAAAVPIRDTPESVREYQRCREVSDRAAVSNEQMRAGVAQCLKELEAR
FT                   RQAG"
FT   misc_feature    188731..188805
FT                   /note="Signal peptide predicted for BPP1808 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.751 between residues 25 and 26"
FT   CDS             189082..189300
FT                   /transl_table=11
FT                   /locus_tag="BPP1809"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1193"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9F1"
FT                   /protein_id="CAE37111.1"
FT                   /translation="MNPQLLALLVEREMPYGKYKGRLMADLPGHYLAWFARNGFPAGEI
FT                   GRLLALMHELDHNGLRDLLKPLRGGRA"
FT   CDS             189350..189967
FT                   /transl_table=11
FT                   /locus_tag="BPP1810"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1194"
FT                   /db_xref="GOA:Q7W9F0"
FT                   /db_xref="HSSP:1VIU"
FT                   /db_xref="InterPro:IPR020084"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9F0"
FT                   /protein_id="CAE37112.1"
FT                   /translation="MSAARMPANAMSADPSDSSHLVETLVSSETLCDGGFLKARRDTVR
FT                   LPSGRTATREYIVHPGAVVVVPLLDDGRVLLERQFRYPIGQVMTEFPAGKLDPGEDPLA
FT                   CARRELLEETGYTAGQWASAGALHLAIAYSTEIIHIFFARQLRAGTRQLDEDEFLDVHS
FT                   ATVPELLQACREGRVTDAKTLTCVLWLQNVLAGDWPLDWQPA"
FT   misc_feature    189524..189919
FT                   /note="HMMPfam hit to PF00293, NUDIX domain, score 3.5e-23"
FT   misc_feature    189629..189688
FT                   /note="PS00893 mutT domain signature."
FT   CDS             189964..190305
FT                   /transl_table=11
FT                   /locus_tag="BPP1811"
FT                   /product="ferredoxin"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1195"
FT                   /db_xref="GOA:Q7W9E9"
FT                   /db_xref="HSSP:1CZP"
FT                   /db_xref="InterPro:IPR001041"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9E9"
FT                   /protein_id="CAE37113.1"
FT                   /translation="MNPAGHEVEVRPQGWRFDARPGESLLRAAARAGIRLPSSCRNGTC
FT                   RTCLCRLVAGEVAYLVEWPGVSADEKAQGWILPCVAQALGPVAIEAPQATPLPPKPPPS
FT                   TLLTGARRA"
FT   misc_feature    189985..190218
FT                   /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster
FT                   binding domain, score 3.1e-12"
FT   CDS             complement(190342..191496)
FT                   /transl_table=11
FT                   /locus_tag="BPP1812"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1196"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9E8"
FT                   /protein_id="CAE37114.1"
FT                   /translation="MTGTPRAPMVSGLFRIGALLAAGLLCGGAWAQDAEADPYGDPIVA
FT                   PRAAPPQWKPLKIGPPGHRYAFPLYSSKNLERDDLRGIRRLVIVLHGVKRNAASIHGTV
FT                   TALFAANPERAEDTLVIAPKFASAIDAGFAAMPAWRRASWEDGELSMQARGRPAPVSSL
FT                   QVLDDLLRELSDSSRLPALRTIVLAGHSGGAQLVQRYAVLNSLDETLRREGLTLQYVVA
FT                   NPSSYLYLSPERPRADGKGHAPYERGICPTYNQYKYGLDHLPAYARGLDPASLPARYAQ
FT                   RHVTYLLGSADNNPEHQLLDKSCGAEAQGATRLARGLGYWRYEAGVLAPRLPRSVAWHH
FT                   DAQEVVDAGHDAAQMFSSSCGARALLGDRSAPLPDGPACLPARR"
FT   misc_feature    complement(191404..191496)
FT                   /note="Signal peptide predicted for BPP1812 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.998 between residues 31 and 32"
FT   CDS             complement(191493..192221)
FT                   /transl_table=11
FT                   /gene="btr"
FT                   /locus_tag="BPP1813"
FT                   /product="transcriptional regulatory protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1197"
FT                   /db_xref="GOA:Q7W9E7"
FT                   /db_xref="InterPro:IPR014710"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9E7"
FT                   /protein_id="CAE37115.1"
FT                   /translation="MQRRVPLSPDAAHCSSCMLGHVCVPVGMPANEVEKLDELVKERVR
FT                   VERGKSLYELDDPLDAVYGVRFGSLKTQLEDSSGQLQITGFHLPGEIVGLDGMIESKHV
FT                   SSAVALEDSEVCVIRLPEIDRVSTQLPSLQQQFRRLMSREITRSHQMLATVGAMRSEQR
FT                   LAAFLLNLSQRYAALGYSSTEFVLRMSREEIGNYLGLTLETVSRLFSRFGREGLIRINQ
FT                   REVRLIDLPGLKQLIGQESC"
FT   misc_feature    complement(191568..191663)
FT                   /note="HMMPfam hit to PF00325, Bacterial regulatory
FT                   proteins, crp family, score 7.4e-15"
FT   misc_feature    complement(191586..191657)
FT                   /note="PS00042 Bacterial regulatory proteins, crp family
FT                   signature."
FT   misc_feature    complement(191826..192104)
FT                   /note="HMMPfam hit to PF00027, Cyclic nucleotide-binding
FT                   domain, score 1.8e-09"
FT   CDS             192544..195141
FT                   /transl_table=11
FT                   /gene="clpB"
FT                   /gene_synonym="htpM"
FT                   /locus_tag="BPP1814"
FT                   /product="ATP-dependent protease, ATPase subunit"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1198"
FT                   /db_xref="GOA:Q7W9E6"
FT                   /db_xref="InterPro:IPR004176"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9E6"
FT                   /protein_id="CAE37116.1"
FT                   /translation="MRFDKLTTKFQQALADAQSLAARNDHPYIEPVHVLAALLGDPDSG
FT                   AASLLARAGVAVNRVQPAIDSALKGLPQVQGEDNVQVGRELQSVLVRTDKEAARRGDTY
FT                   IASELFLLALADDKGDAGRILREAGLQKKALEAAIDAVRGGENVSGAEGESNREALSKY
FT                   TLDLTERARQGKLDPVIGRDDEIRRTIQILQRRTKNNPVLIGEPGVGKTAIVEGLAQRI
FT                   VNDEVPETLRGKRVLSLDLAALLAGAKFRGEFEERLKAVLKELAQDDGQNIVFIDELHT
FT                   MVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQKVLVGEP
FT                   DVESTIAILRGLQERYELHHGVEITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAGAR
FT                   IRMEIDSKPEVMDRLDRRIIQLKIEREAVKKETDDASMRRLAVIEEELEKLQREYNDYE
FT                   EIWKAEKAAVQGTQAIKEEIDRVRAEMAELQRKGQFDKLAELQYGKLPELEARLKAADS
FT                   AEREAGESDSGKPRLLRTQVGAEEIAEVVSRATGIPVAKMMQGERDKLLRMEDFLHKRV
FT                   VGQDEAVRLVSDAIRRSRAGLADPSRPYGSFLFLGPTGVGKTELTRALADFLFDSEEHM
FT                   IRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFN
FT                   VLLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSQHIQSMAGKPYEVIKEVVWDELKHT
FT                   FRPEFLNRIDEVVVFHGLEAQHIESIARIQLKRLGERLEKQEMRLDVSDAALAEIARSG
FT                   FDPVFGARPLKRAVQQQIENPVAKLILEGVFGPRDVVPVDWQDGKFVFTRTLQ"
FT   misc_feature    192592..192750
FT                   /note="HMMPfam hit to PF02861, Clp amino terminal domain,
FT                   score 9.9e-11"
FT   misc_feature    192820..192975
FT                   /note="HMMPfam hit to PF02861, Clp amino terminal domain,
FT                   score 5.4e-13"
FT   misc_feature    193141..193725
FT                   /note="HMMPfam hit to PF00004, ATPase family associated
FT                   with various cellular activities (AAA), score 1.6e-09"
FT   misc_feature    193156..193179
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    193420..193458
FT                   /note="PS00870 Chaperonins clpA/B signature 1."
FT   misc_feature    194374..194397
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    194452..194508
FT                   /note="PS00871 Chaperonins clpA/B signature 2."
FT   CDS             195458..197275
FT                   /transl_table=11
FT                   /gene="bapB"
FT                   /locus_tag="BPP1815"
FT                   /product="autotransporter"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1200"
FT                   /db_xref="GOA:Q7W9E5"
FT                   /db_xref="InterPro:IPR003991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9E5"
FT                   /protein_id="CAE37117.1"
FT                   /translation="MFIHRKSHRVRVGRRVHRAPASWRHCWRWRLAALAGSGAICAAPA
FT                   WATGAGLDDLRQWLAPPSRKTPEVSPPGKQAAAAGMAGFGSLSAGGLDQWLAPSSRPAP
FT                   VRPGSPSGSPAAPVSGASPGAPAMPSPDALPHTPPASGGDRVISGILQQDLGSWLAPDA
FT                   AKRSPSEPGKAPEKIGVMPNEDLGKWLVPGAQKNNPPEPRKTLDEIRAGLEKWVAPGSK
FT                   PPVEPDPDKATQEYRKDLDKWLAPPAKSGPPSAPPEAPPQAQPEAPPVVPPPAEPPAAR
FT                   PPAVPPARPAGDAVYLPGTRTLTPTANAAVGTASAAQGLWQAEMNALGKRMGELRLTPA
FT                   AGGVWGRAFTQRQKLDNGVAREFRQTVGGFELGADTALAAAEGRWHVGAVAGYSQGSLK
FT                   FRHGGTGDDDSVHVGAYATYIGNSGFYLDGIVRVSRFSHEFKVHDTQGRRVRGQYRGNG
FT                   VGASLELGKRFTWPGAWYVEPQLEVAAFRAQGADYTASNGLRIKDDGTNSMLGRLGLHV
FT                   GRQFDLGDGRVVQPYMKLSWVQEFDGKGTVRTNDIRHKVRLDGGRAELAVGVASQLGKH
FT                   GSLYGSYEYAKGSRQTMPWTFHIGYRYAW"
FT   misc_feature    195980..197269
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF03212, Pertactin, score 1.1e-175"
FT   CDS             complement(197340..198023)
FT                   /transl_table=11
FT                   /locus_tag="BPP1816"
FT                   /product="TetR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1202"
FT                   /db_xref="GOA:Q7W9E4"
FT                   /db_xref="InterPro:IPR012287"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9E4"
FT                   /protein_id="CAE37118.1"
FT                   /translation="MIAPASPQAALSGEPPHGPRARMRRTLLDTAQRLMAQGITPSVAE
FT                   LAEAAAVSRATAYRYFPSQSALIAAVVDQSLGPILQWRAQSDDTAERIDELLRFAYPHL
FT                   QQHEASLRAAIMVSLQQYAEASAGQNPDTPRLVRGHRVDTLKHVTAPLASQLEPAAHQR
FT                   VMRALSLLYGTEVFLILKDIWHLELDDIVDVVTWAAQAIVRQAQQEAGLTPDPGKPRGK
FT                   RKQMP"
FT   misc_feature    complement(197811..197945)
FT                   /note="HMMPfam hit to PF00440, Bacterial regulatory
FT                   proteins, tetR family, score 1.1e-07"
FT   CDS             198187..199395
FT                   /transl_table=11
FT                   /locus_tag="BPP1817"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1203"
FT                   /db_xref="InterPro:IPR008322"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9E3"
FT                   /protein_id="CAE37119.1"
FT                   /translation="MQEIEQRIYLAATYDTKGEEAEYLRQLLRRDGVMVVTVDVATSGQ
FT                   GSPAMVSAQEVAACYPQGAQAVFTGERGSAIVAMALAFERYLAGQRDVGAVLGIGGSGG
FT                   TALVTPAMRALPVGVPKLMVSTMASGNVAPYVGPSDIAMMYSVTDVAGLNRISRRVLAN
FT                   AAGAIAGAFRQARQPIADDGRPAVGITMFGVTTPCVQHVTAALHDRYDCLVFHATGTGG
FT                   QSMEKLADSGLLAGVLDLTTTEVCDFLFGGVLACTDDRFGAIARSGVPYVGSCGALDMV
FT                   NFGALDTVPAACRERLLYPHNPQVTLMRTTAQENARQGAWIAERLNRCEGQVRFLIPEG
FT                   GVSALDAPGQAFYDEAADAALFQALYDHVRQTDRRRLVRVPCHINDPLFARAAVEQFHE
FT                   ISQ"
FT   misc_feature    198814..198834
FT                   /note="PS00290 Immunoglobulins and major histocompatibility
FT                   complex proteins signature."
FT   CDS             199405..200235
FT                   /transl_table=11
FT                   /locus_tag="BPP1818"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1204"
FT                   /db_xref="InterPro:IPR009215"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9E2"
FT                   /protein_id="CAE37120.1"
FT                   /translation="MPRFERSALLDKFQDMVRRRQPIVGGGAGTGLSAKCEEAGGVDLI
FT                   VIYNSGRYRMAGRGSLAGLLAYGNANDIVLDMAREVLPVVRHTPVLAGVNGTDPFCNFD
FT                   AFLDELARVGFSGVQNFPTVGLIDGTFRANLEETGMGYGLEVEMIRLAHAKGLLTTPYV
FT                   FDPDQARAMTAAGADIVVAHMGLTTGGNIGAETALSLDDCVARIDAIAVAALAERGDVI
FT                   VLCHGGPIATPQDAAHVLQRCRHCHGFYGASSMERLPAEQALTATTRAFKQLSF"
FT   misc_feature    200131..200148
FT                   /note="PS00190 Cytochrome c family heme-binding site
FT                   signature."
FT   CDS             200303..200755
FT                   /transl_table=11
FT                   /locus_tag="BPP1819"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1205"
FT                   /db_xref="InterPro:IPR019587"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9E1"
FT                   /protein_id="CAE37121.1"
FT                   /translation="MSHLVYVSRVVAAPIERVWPHLRDFNGLSAWHPGVADSRLEEGGR
FT                   DDAPGTVRFLSLNPSGYVRERLLMLDDAGRSLRYAIIETDLPMRDYVAGVDLCPVTEGG
FT                   GTFAQWWADFDVVAGANRDEVARLVGEGVFAAGLQALDQYLRGRQA"
FT   CDS             complement(200763..201725)
FT                   /transl_table=11
FT                   /locus_tag="BPP1820"
FT                   /product="LysR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1206"
FT                   /db_xref="GOA:Q7W9E0"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9E0"
FT                   /protein_id="CAE37122.1"
FT                   /translation="MNRLPKHVTLKHLTAFVAVAQESSFTHAARRLFQTQSSVTTLVRQ
FT                   LETALGTQLFARTSRKVLLSAAGQDFLPRVMRLLADFDGVIEDVVRYGALERGRVSVAA
FT                   APSAITQLIAPAAADFARRHPAIRLYLRDDNSGRIQRQVAAQEVDFGLTSRWADAPGLA
FT                   FDPLLEDRFGVLYRADDTSIQPGRDGHVRWERLSHRKLVGVVDETGIMALLRARADLPI
FT                   EAAAPFYEASSTTSQAALVKAGLGVALLPALAAERVREPGLAFALLARPTVMRTLCIIG
FT                   HQERALSPAAAALIDTLRAYVRQATLPAGCRPAGRNSRA"
FT   misc_feature    complement(200817..201449)
FT                   /note="HMMPfam hit to PF03466, LysR substrate binding
FT                   domain, score 7e-31"
FT   misc_feature    complement(201519..201698)
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family, score 4.1e-21"
FT   misc_feature    complement(201564..201656)
FT                   /note="PS00044 Bacterial regulatory proteins, lysR family
FT                   signature."
FT   misc_feature    complement(201642..201725)
FT                   /note="Signal peptide predicted for BPP1820 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.801) with cleavage site
FT                   probability 0.764 between residues 28 and 29"
FT   CDS             201830..203272
FT                   /transl_table=11
FT                   /locus_tag="BPP1821"
FT                   /product="N-acyl-D-glutamate deacylase"
FT                   /EC_number="3.5.1.82"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1207"
FT                   /db_xref="GOA:Q7W9D9"
FT                   /db_xref="InterPro:IPR012855"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9D9"
FT                   /protein_id="CAE37123.1"
FT                   /translation="MQNAEKLDFKITGGWIIDGTGAPRRRADLGVRDGRIAAIGELGAH
FT                   PARHAWDASGKIVAPGFIDVHGHDDLMFVEKPDLRWKTSQGITTVVVGNCGVSAAPAPL
FT                   PGNTAAALALLGETPLFADVPAYFAALDAQRPMINVAALVGYANLRLAAMRDPQAAPTA
FT                   AEQQAMQDMLQAALEAGAVGFSTGLAYQPGAVAQAAELEGLARVAAERRRLHTSHIRNE
FT                   ADGVEAAVEEVLAIGRGTGCATVVSHHKCMMPQNWGRSRATLANIDRAREQGVEVALDI
FT                   YPYPGSSTILIPERAETIDDIRITWSTPHPECSGEYLADIAARWGCDKTTAARRLAPAG
FT                   AIYFAMDEDEVKRIFQHPCCMVGSDGLPNDARPHPRLWGSFTRVLGRYVREARLMTLEQ
FT                   AVARMTALPARVFGFAERGVLQPGAWADVVVFDPDTVADRATWDEPTLASVGIAGVLVN
FT                   GAEVFPQPPADGRPGQVLRAGA"
FT   CDS             203302..204276
FT                   /transl_table=11
FT                   /locus_tag="BPP1822"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1208"
FT                   /db_xref="GOA:Q7W9D8"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9D8"
FT                   /protein_id="CAE37124.1"
FT                   /translation="MTRRHPMRKTLAVLALMAALPAAHADFPERPITLIVPFPAGGPTD
FT                   IVGRVAAAKAGEILGQQIVVENRTGAAGTIGITATARAKPDGYTLGLATVSTHGTAPHL
FT                   FPNLAYDPVKDFTPVSNLVTSPNILSVNPSYPAADLGAFVAHVRANPGRDGYANAGAGG
FT                   VNDLGMIWFLQLIGGKMTSIAYRGSAPALTDAVSGVVPVIFDNFPSSLPYIKSGHLRPL
FT                   AITGAARNPRLPEVPTFAEQGYRDYDVTAWYGVVAPAGLPDAVRDKLAQAFAQAVRDPA
FT                   TAAKMEETGAFPLGNTPAEFAAQIQAEQARWKTVIEKADIKLQ"
FT   misc_feature    203302..203376
FT                   /note="Signal peptide predicted for BPP1822 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 1.000 between residues 25 and 26"
FT   misc_feature    203440..204264
FT                   /note="HMMPfam hit to PF03401, Uncharacterized protein
FT                   family, UPF0065, score 2.4e-90"
FT   CDS             complement(204292..205671)
FT                   /transl_table=11
FT                   /locus_tag="BPP1823"
FT                   /product="probable oxidoreductase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1209"
FT                   /db_xref="GOA:Q7W9D7"
FT                   /db_xref="HSSP:1J9Z"
FT                   /db_xref="InterPro:IPR001094"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9D7"
FT                   /protein_id="CAE37125.1"
FT                   /translation="MPLPPHPRPVAAAGLVLAWLLLCLWAWRQARMRAASQARALRALE
FT                   ARPGPQTVLVAYASQTGFAAELAEHTAAALASGGLQARVAELGQIDAATLGHYARALFI
FT                   VSTYGEGDPPDAAAPFADTAMQSGAGLGALRYAVLALGDSSYAHFCGFGHRLDDWLRAN
FT                   GAAPLFDLVEVDAGDAAALRHWQRHLGVVTGCTDLPDWQAPAYQSWRLARRTLLNPGSQ
FT                   GAPCYFIELTPPHGTAPQWQAGDIAEIGPRDAPDSPLHAHREYSIASLPADGAVHLLVR
FT                   QMRSADGALGLGSGWLTHIAQTGQAIDLRVRANRNFHPPADARPLILVGNGTGLAGLRA
FT                   LLKARRSAGHGRNWLVFGERSAAHDWFCRDELAQWRGEGWLEYVDAVFSRDAPQRRYVQ
FT                   DLLRERAERVRDWIREGAAVYVCGSLHGMAEGVHQALADILGPAQLQALQHAGRYRRDV
FT                   Y"
FT   misc_feature    complement(204367..204705)
FT                   /note="HMMPfam hit to PF00175, Oxidoreductase NAD-binding
FT                   domain, score 6e-17"
FT   misc_feature    complement(205093..205518)
FT                   /note="HMMPfam hit to PF00258, Flavodoxin, score 3e-32"
FT   misc_feature    complement(205591..205641)
FT                   /note="1 probable transmembrane helix predicted for BPP1823
FT                   by TMHMM2.0 at aa 10-27"
FT   CDS             complement(join(205671..205898,205900..206688))
FT                   /pseudo
FT                   /transl_table=11
FT                   /gene="apbE"
FT                   /locus_tag="BPP1824"
FT                   /product="thiamine biosynthesis protein (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1210"
FT                   /db_xref="PSEUDO:CAE37126.1"
FT   misc_feature    complement(join(205725..205898,205900..206661))
FT                   /note="HMMPfam hit to PF02424, ApbE family, score 7e-82"
FT   variation       complement(205901)
FT                   /note="A in parapertussis; (-) in pertussis"
FT   CDS             complement(206693..207493)
FT                   /transl_table=11
FT                   /locus_tag="BPP1825"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1211"
FT                   /db_xref="InterPro:IPR019613"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9D6"
FT                   /protein_id="CAE37127.1"
FT                   /translation="MKAVAKLAAALTLALPLAAQAHDVWVLPSSTVLSGVDSWITVDAA
FT                   VGNDKFYFNHAPLRLDGLDIIAPDGSAAQAENVSRGKIRSTFDLQLKQNGTYRVAVVND
FT                   GVFARWKEDGKPKRYFGKPEGMAAAVPANAQELEVSQSLGRVETFVTAGKPGAIKPVGK
FT                   GLELVAVSHPNDLYSDEPATFQMLLDGKPAAGLEMEIVPNGSRYRDKIEEIELKTDADG
FT                   KFQVKWPQPGMYWVHTEAEDDKVSVPKATKRRMSYALTLEVLRP"
FT   misc_feature    complement(207431..207493)
FT                   /note="Signal peptide predicted for BPP1825 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.999 between residues 21 and 22"
FT   CDS             complement(207523..208038)
FT                   /transl_table=11
FT                   /locus_tag="BPP1826"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1212"
FT                   /db_xref="InterPro:IPR014469"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9D5"
FT                   /protein_id="CAE37128.1"
FT                   /translation="MRKLLLSALLAGLVARTAYAADLGLSVEIPRLDVAEYHRPYVAIW
FT                   IEQADQSVAGDLAVWYDVAKKNNEGAEWLKDMRQWWRRSGRNQQFPVDGVSGATRPAGK
FT                   HALSFAGTAKPLADLKPGKYAVVVEAAREVGGRELVRVPFDWPPQQAQQLTARGEHELG
FT                   AIAVDLKP"
FT   misc_feature    complement(207979..208038)
FT                   /note="Signal peptide predicted for BPP1826 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 1.000 between residues 20 and 21"
FT   CDS             complement(208061..208690)
FT                   /transl_table=11
FT                   /locus_tag="BPP1827"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1213"
FT                   /db_xref="InterPro:IPR005625"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9D4"
FT                   /protein_id="CAE37129.1"
FT                   /translation="MDGKTSSKRRAYWLKTLHQWHWISSALCLLGMLLFAVTGLTLNNA
FT                   SHIESRARVDTRHLELPAPLRAELAAAAPARPALPPALLEWLDRELDVDARGAAAKPEW
FT                   SPDELYVSLPRPGGDAWLSIDLQSGELEYERTDRGWIAYLNDLHKGRHTGLAWNWFLDI
FT                   FAVACLVFSLTGLVLLKMHAGNRAATWPMVGLGVVIPVVLALLFIH"
FT   misc_feature    complement(join(208067..208123,208154..208219,
FT                   208565..208630))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BPP1827 by TMHMM2.0 at aa 20-42, 157-179 and 189-208"
FT   misc_feature    complement(208583..208690)
FT                   /note="Signal peptide predicted for BPP1827 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.988) with cleavage site
FT                   probability 0.364 between residues 36 and 37"
FT   CDS             208769..209785
FT                   /transl_table=11
FT                   /gene="nodI"
FT                   /locus_tag="BPP1828"
FT                   /product="ABC, transporter, ATP-binding protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1214"
FT                   /db_xref="GOA:Q7W9D3"
FT                   /db_xref="HSSP:1G9X"
FT                   /db_xref="InterPro:IPR005978"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9D3"
FT                   /protein_id="CAE37130.1"
FT                   /translation="MPYFNRFRARHTGAARRGYRIVAMSSNPVSASCAPVLQVHGLTKR
FT                   YGERVIVDGLSFALRRGECYGLLGPNGAGKTTTLRALLGLTPFDGGAVEVLGHAVPAQA
FT                   RQARARLGVVPQIDNLDPDFTVAENLLVFGRYFGLSDAQVRARLPQLLAFAALAAKADA
FT                   RIGELSGGMKRRLTLARALINDPDLIIMDEPTTGLDPQARHLIWERLKALLARGKTILL
FT                   TTHFMDEAERLCHRLGVIDHGRLITEGAPRALIERCLEPQVVEVYGDDLHAWLDAHRAA
FT                   LPARVEVSGETAFCHTDDATPVVQALQGWPDLRYLHRPANLEDLFLRLTGRGMREDA"
FT   misc_feature    208835..208867
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    208952..209497
FT                   /note="HMMPfam hit to PF00005, ABC transporter, score
FT                   1.2e-60"
FT   misc_feature    208973..208996
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    209270..209314
FT                   /note="PS00211 ABC transporters family signature."
FT   misc_feature    209402..209425
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             join(209782..210210,210209..210565)
FT                   /pseudo
FT                   /transl_table=11
FT                   /gene="nodJ"
FT                   /locus_tag="BPP1829"
FT                   /product="ABC transporter, permease protein (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1215"
FT                   /db_xref="PSEUDO:CAE37131.1"
FT   misc_feature    join(209839..210210,210209..210556)
FT                   /note="HMMPfam hit to PF01061, ABC-2 type transporter,
FT                   score 0.00092"
FT   misc_feature    join(209881..209949,209962..210030,210220..210288,
FT                   210307..210375,210475..210543)
FT                   /note="5 probable transmembrane helices predicted for
FT                   BPP1829 by TMHMM2.0 at aa 34-56, 61-83, 147-169, 176-198
FT                   and 232-254"
FT   variation       210201..210208
FT                   /note="(CG)4 in parapertussis; CGCGCGTGCG"
FT   CDS             210666..211226
FT                   /transl_table=11
FT                   /locus_tag="BPP1830"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1216"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9D2"
FT                   /protein_id="CAE37132.1"
FT                   /translation="MVTDAVLNHAGREWGWVALRGVVAVLFGLMAVLMPGITLSALVLV
FT                   WGAFALADGIFALIAGWRIRDQDKPLWPLILVGLTGIAAGIATFAWPGLTALVLLYIIA
FT                   FWAVIGGVFQIAAAIRFRKDIENEWLHGLSGALSIVFGALLLFQPGAGALALVWVIGVY
FT                   AVLFGVLLLALALRLKNHAATPA"
FT   misc_feature    join(210711..210779,210789..210857,210876..210935,
FT                   210945..211013,211050..211118,211131..211199)
FT                   /note="6 probable transmembrane helices predicted for
FT                   BPP1830 by TMHMM2.0 at aa 16-38, 42-64, 71-90, 94-116,
FT                   129-151 and 156-178"
FT   CDS             211236..211616
FT                   /transl_table=11
FT                   /locus_tag="BPP1831"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1217"
FT                   /db_xref="GOA:Q7W9D1"
FT                   /db_xref="InterPro:IPR003691"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9D1"
FT                   /protein_id="CAE37133.1"
FT                   /translation="MLTFAPLNFLAIGVGATLGAWLRWVPGLRLNGAGWPWGTLTANLV
FT                   GGYLIGVMVALIASHPEWPAWIRLAAVTGFLGGLTTFSTFSAETVDMLERGVYATAAAY
FT                   AGASLAGSLAMTGLATVRLLLR"
FT   misc_feature    join(211254..211313,211341..211409,211428..211496,
FT                   211539..211607)
FT                   /note="4 probable transmembrane helices predicted for
FT                   BPP1831 by TMHMM2.0 at aa 7-26, 36-58, 65-87 and 102-124"
FT   misc_feature    211260..211604
FT                   /note="HMMPfam hit to PF02537, CrcB-like protein, score
FT                   1.8e-29"
FT   CDS             complement(211639..212970)
FT                   /transl_table=11
FT                   /locus_tag="BPP1832"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1218"
FT                   /db_xref="GOA:Q7W9D0"
FT                   /db_xref="InterPro:IPR002937"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9D0"
FT                   /protein_id="CAE37134.1"
FT                   /translation="MKVAVIGAGWAGLAASVALREADAKVTVFEAGRTPGGRARRVVHP
FT                   EFGDDLDNGQHILLGAYGETLALMRRLGRNPDALLMRRPLRLASLDGGFRLSAPPLPAP
FT                   LHAAAALLLARGLPWRSRVAAVRLMHYLRQMQWQAPRDWTVTQLLDHTRQPAGIRQSVW
FT                   VPLCLAALNTPPAQASALLYAHILRDSLTGHRRNSDLLLPCADLSALWPDVAALQATMR
FT                   YGNTVRRLTPQAHSVEVNGERFDAAVLAVSPQVAARLLENALAERGSSGLLRALQAFDY
FT                   EPIATLNLRLAGPWPLPEPMMMLREEPARGFHGQWLFDRSRLTGRGERGELAVVVSAAR
FT                   AVAAADREQAIAALTRQVAEQARRHPARLAPMPAVEIAELFVEKRATFAAVPGLARPLN
FT                   STPWRSLALAGDWTDTGYPGVLEGAVRSGLQAARVVLGGAATQD"
FT   misc_feature    complement(211663..212943)
FT                   /note="HMMPfam hit to PF01593, Flavin containing amine
FT                   oxidoreductase, score 4.9e-16"
FT   misc_feature    complement(212911..212970)
FT                   /note="Signal peptide predicted for BPP1832 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.851) with cleavage site
FT                   probability 0.458 between residues 20 and 21"
FT   CDS             complement(212967..213830)
FT                   /transl_table=11
FT                   /locus_tag="BPP1833"
FT                   /product="putative phytoene synthase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1219"
FT                   /db_xref="GOA:Q7W9C9"
FT                   /db_xref="InterPro:IPR019845"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9C9"
FT                   /protein_id="CAE37135.1"
FT                   /translation="MTPDEYCQEKAARSGSNFYYSFLFLPPARRRAITALYAFCREVDD
FT                   VVDECSDPSLARVKLAWWRTQVDQMVDGKPDHPVTRALQPHLADCNITRERLLAVIDGM
FT                   EMDLDQTRYLDWPGLRKYCWHVAGVVGELSAGVFGYQDARTLDYAGKLGLAFQLTNIIR
FT                   DVGDDARRGRIYLPVNELQQFEVKAADILNGVHSERFSALMRFQAERARGLYREAMQAL
FT                   PETDRRAQRPGLMMAAIYHALLDEIERDDWQVLHQRISLTPVRKLWLAWKTWVSGGAPL
FT                   VRRLAR"
FT   misc_feature    complement(212994..213800)
FT                   /note="HMMPfam hit to PF00494, Squalene/phytoene synthase,
FT                   score 1.6e-54"
FT   misc_feature    complement(213300..213377)
FT                   /note="PS01045 Squalene and phytoene synthases signature
FT                   2."
FT   misc_feature    complement(213420..213467)
FT                   /note="PS01044 Squalene and phytoene synthases signature
FT                   1."
FT   CDS             complement(213832..214662)
FT                   /transl_table=11
FT                   /locus_tag="BPP1834"
FT                   /product="putative phytoene synthase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1220"
FT                   /db_xref="GOA:Q7W9C8"
FT                   /db_xref="InterPro:IPR002060"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9C8"
FT                   /protein_id="CAE37136.1"
FT                   /translation="MAIDHYENFPVASLLLPRRLRGAVTDIYRFARAADDIADEGAAED
FT                   AERLRQLAAFRAELHRIGAEPGTLAVPASADLAPIFTPLAATIARHQLPITPFFDLLSA
FT                   FEQDISVKRYESHDDLLDYCRRSANPVGRLMLHLYGAVDEANLRDADAICTGLQLVNFW
FT                   QDVRIDWRKQRVYLPEEDLRRHGISRDDLAACRLTPQWRELMAFEVQRTRALLHSGAAL
FT                   PRRLPGRIGLELRLVVQGGLRILQRIEDAGYDVFMNRPELGAKDWAVMLWRAFT"
FT   misc_feature    complement(213838..214638)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF00494, Squalene/phytoene synthase,
FT                   score 3e-17"
FT   CDS             214791..215918
FT                   /transl_table=11
FT                   /gene="dadX"
FT                   /gene_synonym="dadB"
FT                   /gene_synonym="alnB"
FT                   /locus_tag="BPP1835"
FT                   /product="alanine racemase, catabolic"
FT                   /EC_number="5.1.1.1"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1221"
FT                   /db_xref="GOA:Q7W9C7"
FT                   /db_xref="HSSP:1NIU"
FT                   /db_xref="InterPro:IPR000821"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9C7"
FT                   /protein_id="CAE37137.1"
FT                   /translation="MPRPIFASISQSALRHNLATVRRHLDDVAAKADGTPPSIWAVLKA
FT                   NAYGHGIEQAVAGFSAAQGLAMLDLQEAVRCREAGWGGPILLLEGFFQPSDLEIVDRYH
FT                   LATTVHTREQFDMLAHARLSRRVDIMVKLNSGMNRLGFAPDAYGSAYARAQQLHEYGVV
FT                   GGIGKMTHFACADGPQGVTQQMNVFNGATAHLAGATSVCNSAATLRYADLAVGHDGQTH
FT                   WVRPGICLYGASPFADAQAGAFGLIPAMTLRSELIAIQDIPAGAAVGYGAIFRADRPMR
FT                   IGVVACGYADGYPRHAGTGTPLTVGGVRTRLVGRVSMDMLMVDLDPVPAAGIGTPVVLW
FT                   GEDGPSVDEVAEAAGTIGYELLCALAPRVPVRHEG"
FT   misc_feature    214902..215912
FT                   /note="HMMPfam hit to PF00842, Alanine racemase, score
FT                   1.6e-117"
FT   misc_feature    214911..214943
FT                   /note="PS00395 Alanine racemase pyridoxal-phosphate
FT                   attachment site."
FT   CDS             216052..216744
FT                   /transl_table=11
FT                   /locus_tag="BPP1836"
FT                   /product="probable short-chain dehydrogenase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1222"
FT                   /db_xref="GOA:Q7W9C6"
FT                   /db_xref="HSSP:1Q7B"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9C6"
FT                   /protein_id="CAE37138.1"
FT                   /translation="MTRFQSMKDKCVLVTGATKGIGWALTQRLTDLGCHVVGIARNTAD
FT                   VDFPGYLYACDLADAGRTEEVLREIRDKFPVDAVVNNVGIVAPQALGEIDLATLYSVLD
FT                   LNVRVAVQVTQTFVESMKVRRSGRIVNICSRAILGAYDRTSYSAAKSALVGCTRTWALE
FT                   LAEYGVTVNAVAPGPVETELFRRGHPAGSDAEKRAQASIPMKRFGTPAEVAAAVAFLLS
FT                   DDAGFITG"
FT   misc_feature    216073..216738
FT                   /note="HMMPfam hit to PF00106, short chain dehydrogenase,
FT                   score 7.5e-52"
FT   CDS             complement(216800..217522)
FT                   /transl_table=11
FT                   /locus_tag="BPP1837"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1223"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9C5"
FT                   /protein_id="CAE37139.1"
FT                   /translation="MNPHLPPDDDDRDLRALYRELPRHEPDIMLDASIREQAQRAAEAD
FT                   RRARRPRATWHPAWAVAACVVAVSALFVFTDLEQYALQPAAEVELQAEQEAAQATRDAM
FT                   PEPPAPDPALAAPPPLGAPAPAPALPPALAPEAARGAAAESSAQDAAPARRGYMPQRAA
FT                   PAVRAEKQQQENLAASARQRDDPAYAQRVERIRALVREGKPQEAAAQVLAWRRAAPGLA
FT                   LPPDLEQLAPADGGTPGQ"
FT   misc_feature    complement(217301..217357)
FT                   /note="1 probable transmembrane helix predicted for BPP1837
FT                   by TMHMM2.0 at aa 55-74"
FT   CDS             complement(217526..218176)
FT                   /transl_table=11
FT                   /locus_tag="BPP1838"
FT                   /product="putative Ecf-type RNA polymerase sigma factor"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1225"
FT                   /db_xref="GOA:Q7W9C4"
FT                   /db_xref="InterPro:IPR007630"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9C4"
FT                   /protein_id="CAE37140.1"
FT                   /translation="MTALAVAPASAACAIAAEAIHCAAMDTASAADEALMLAYGAEGDM
FT                   DAFDALYARHRAGLYRYILRSARNAAQADDIFQETWSRVIDARARYRPQARFTTWLLQI
FT                   AHNLLVDAHRRQPAPVAPEQAEAALASVPAAEHEQPEARLSEFQQRRRLQLAIERLPDE
FT                   QRLAMLLRLEHDLDVEEIAQVTGVSRETVKSRLRYATRRIREELSSESAPRSP"
FT   misc_feature    complement(217829..217996)
FT                   /note="HMMPfam hit to PF00776, Sigma-70 factor (ECF
FT                   subfamily), score 2.6e-13"
FT   CDS             complement(218182..219897)
FT                   /transl_table=11
FT                   /locus_tag="BPP1839"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1226"
FT                   /db_xref="InterPro:IPR002035"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9C3"
FT                   /protein_id="CAE37141.1"
FT                   /translation="MTPILRPSPLLYTVLSLAMLSACSPTEPPSAGVAGQPAAVPGQPA
FT                   PQAVPAAPRGEPAGAPQRELAAQTYMPPASHAAARAHADQARMRIMPAPMPVIQEDREN
FT                   YAGYQDNPVQLAQEQPVSTFGLDVDTGSYSNVRRLLNDGRLPPADAVRAEAFINYFDYG
FT                   YPAPATPAVPFSLTTEIAPAPWNPQRQLLLVGIQGYRVAPQDIPAVNLVLLIDTSGSMA
FT                   DRAKLPLLKSALRQLVTQMRAQDRVAIVAYAGSAGLVLPSTPGDRHAQILAAIDGLQAS
FT                   GSTNGGAGLELAYAEAAKGLVKDGVNRIVLASDGDFNVGRTDLAQLKDYVGSQRKRGIA
FT                   LTTLGLGSGNYNDAMAMQLANAGDGSYHYIDSLLQARKVFASELSATLLTIAKDVKVQV
FT                   EFNPARVAEYRLIGYEKRALAREDFNNDAVDAGELGAGANVTALYEITPAGAAQRIDAL
FT                   RYGQPARAADSPRDELAYVRIRYQSPEGGASRLIEQPVAADAAAPAASARLNRAAAAAA
FT                   FTQWLRGGKYLDGYAPQAIAALARQSRGADPLGLQAEFANLVELAASLGTPAAR"
FT   misc_feature    complement(218746..219270)
FT                   /note="HMMPfam hit to PF00092, von Willebrand factor type A
FT                   domain, score 0.00013"
FT   CDS             220024..221385
FT                   /transl_table=11
FT                   /gene="radA"
FT                   /gene_synonym="sms"
FT                   /locus_tag="BPP1840"
FT                   /product="DNA repair protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1227"
FT                   /db_xref="GOA:Q7W9C2"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9C2"
FT                   /protein_id="CAE37142.1"
FT                   /translation="MAKSRTIYVCAECGGTSLKWQGKCPHCSAWNTLEETVESAASSAG
FT                   GHRYAPLAAASPVRSLSEIEARETPRQPTGLDEFDRVLGGGLVAGAVVLIGGDPGIGKS
FT                   TLLLQALASLSATTKVLYVTGEESAEQVALRARRLGLQTGNVDLLAEIRLEAIQAAVSE
FT                   QKPTVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGAL
FT                   AGPRVLEHIVDTVLYFEGDTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSAL
FT                   FLSQHQQQVAGSCVLATQEGTRPLLVEVQALVDTSHAPNPRRLTVGLEGNRLAMLLAVM
FT                   HRHAGVSTYDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDKPLPAGLVAFGEIGLAG
FT                   EIRPAPRGQERLREAAKLGFSVALIPKANAPRQPIEGLEIWAVDRLDAALDKLR"
FT   misc_feature    220312..220335
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             221408..222181
FT                   /transl_table=11
FT                   /locus_tag="BPP1841"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1228"
FT                   /db_xref="GOA:Q7W9C1"
FT                   /db_xref="InterPro:IPR002781"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9C1"
FT                   /protein_id="CAE37143.1"
FT                   /translation="MSLLVIAACLASGALIGFMGGALGIGGGLIAIPALGLLLGMPQQL
FT                   AQGTALIMVLPTIMMAVRKYHQHARIDMRVAGAGAAGAVVFTWVGAQLALGIVSRTLRL
FT                   SFAVFLFFIALFYVYQTVRKRAAAAPAAPARPAPVLSPPRASVLGVLCGTLGGFFGVGG
FT                   AVLAVPIITSVFRLPQTMAQALALTMVIPGSMIALVTYTWAGQADWWIGVPLAAGSLVF
FT                   VPVGVRLAYRLPERKLRACFAAMLFATVALLIFEA"
FT   misc_feature    221408..221479
FT                   /note="Signal peptide predicted for BPP1841 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.997) with cleavage site
FT                   probability 0.676 between residues 24 and 25"
FT   misc_feature    join(221444..221512,221540..221593,221630..221698,
FT                   221711..221764,221951..222019,222032..222100,
FT                   222119..222172)
FT                   /note="7 probable transmembrane helices predicted for
FT                   BPP1841 by TMHMM2.0 at aa 13-35, 45-62, 75-97, 102-119,
FT                   182-204, 209-231 and 238-255"
FT   misc_feature    221672..222169
FT                   /note="HMMPfam hit to PF01925, Domain of unknown function
FT                   DUF81, score 8.9e-10"
FT   CDS             222340..222567
FT                   /transl_table=11
FT                   /locus_tag="BPP1842"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1229"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9C0"
FT                   /protein_id="CAE37144.1"
FT                   /translation="MTTQSRIAAFLSTSALCLGLAAAPSAYAAQGDTQSGAKSSVKAPS
FT                   GGKHAKGEKHAKSGAHHGAHHAKTGSTSTK"
FT   misc_feature    222340..222423
FT                   /note="Signal peptide predicted for BPP1842 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.992 between residues 28 and 29"
FT   misc_feature    222358..222426
FT                   /note="1 probable transmembrane helix predicted for BPP1842
FT                   by TMHMM2.0 at aa 7-29"
FT   CDS             complement(join(222635..223432,224470..225078))
FT                   /pseudo
FT                   /transl_table=11
FT                   /gene="norM"
FT                   /locus_tag="BPP1845"
FT                   /product="multidrug resistance protein (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1230"
FT                   /db_xref="PSEUDO:CAE37145.1"
FT   misc_feature    complement(join(222671..222736,222797..222862,
FT                   222926..222976,223007..223072,223112..223177,
FT                   223238..223303,223367..223423))
FT                   /note="7 probable transmembrane helices predicted for
FT                   BPP1843 by TMHMM2.0 at aa 5-24, 45-67, 87-109, 122-144,
FT                   154-171, 192-214 and 234-256"
FT   misc_feature    complement(222812..223300)
FT                   /note="HMMPfam hit to PF01554, Uncharacterized membrane
FT                   protein family UPF0013, score 2.7e-20"
FT   repeat_region   223435..223463
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS1002 element"
FT   repeat_region   223435..224475
FT                   /note="IS1002 insertion sequence"
FT   CDS             223525..224475
FT                   /transl_table=11
FT                   /locus_tag="BPP1844"
FT                   /product="transposase for IS1002"
FT                   /note="transposase for IS1002 element"
FT                   /db_xref="GOA:Q79GB8"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q79GB8"
FT                   /protein_id="CAE37146.1"
FT                   /translation="MNNHKHARLTRLGRALLVNRVMQQNWTMRQASQAAGVSLRTGYKW
FT                   LARFRSEGLDGLLDRSSRPHRSPKACAPEQVEHFAQQRRQRLPLWRIAREAGRSLATVA
FT                   RYMERIGLSRLASLEPPAPVRRYERASPGELLHIDTKRLGRIRGVGHRITGDRAQNRNR
FT                   GIGWDAVHLAIDDFSRVSFARILDDEGGDQCAEFLRQATAYYASLGVRIDRVMTDNGSG
FT                   YVSRTFRAVCVELGIRHIRTRPYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQ
FT                   PFIDRYNWCRPHSALGHQPPITRIPDVNNLLRIDS"
FT   misc_feature    223906..224442
FT                   /note="HMMPfam hit to PF00665, Integrase core domain, score
FT                   6.8e-30"
FT   repeat_region   complement(224447..224475)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS1002 element"
FT   misc_feature    complement(join(224476..224541,224605..224670,
FT                   224716..224781,224839..224904,224950..225015))
FT                   /note="5 probable transmembrane helices predicted for
FT                   BPP1845 by TMHMM2.0 at aa 21-43, 58-80, 99-121, 136-158 and
FT                   179-201"
FT   misc_feature    complement(224527..225012)
FT                   /note="HMMPfam hit to PF01554, Uncharacterized membrane
FT                   protein family UPF0013, score 4.1e-17"
FT   CDS             complement(225075..226811)
FT                   /transl_table=11
FT                   /locus_tag="BPP1846"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1231"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9B9"
FT                   /protein_id="CAE37147.1"
FT                   /translation="MSPISRSTPARLTVQATAKLPRLVLLGLSLIYIVAGLFMRDPWKT
FT                   DDVVGLATMITALREGGMTWLLPQVGHLAHAEEGPMITWVGGASMWLFGPWLGDITAGR
FT                   LPNLLWFGIATVSVWYGTYLLGRRAEAQPLKLPFGGEPAARDYGRMLADAALLLLLATV
FT                   GILQRLHETSVVPAIMAWQALAFYAMARTLDRPFLGATTLGVAVAGAFLTRGWIGAAPV
FT                   MVAAVLAFYPRSLLWQRVRWLPWAALIAAALMLAWWLPATLAEGSDYWIRNWKTWTLAS
FT                   YDWPDLRITGRTLRDLPWYLWPTWPLALLAIWRWRAWLYAPHIWVPLVLAATAALMLLF
FT                   LDGPNDAEYAMLAVPCAILGAFSLPTLRRGVVNTLDWFAVMCFSLTAATAWLGWVALHF
FT                   GWPAQISRNIARQTTGYEASISWLASALALVISAAWVVLVVWRLRSRPLALWRGTVLSA
FT                   GGLTATWILLVLLWQPAVDYARSYRTVSGQLAAALQANLQPGECVRGLSLGSGQRASFL
FT                   VFDNMSFTYDSKCTLVLQQTTHSSLRDGTAAYSDGATELWRGGRRADRHEVFRLLRVTP
FT                   TR"
FT   misc_feature    complement(join(225393..225458,225489..225554,
FT                   225615..225680,225711..225767,225789..225854,
FT                   226020..226085,226125..226190,226236..226292,
FT                   226314..226370,226431..226496,226518..226568,
FT                   226695..226751))
FT                   /note="12 probable transmembrane helices predicted for
FT                   BPP1846 by TMHMM2.0 at aa 20-39, 81-98, 105-127, 147-166,
FT                   173-192, 207-229, 242-264, 319-341, 348-367, 377-399,
FT                   419-441 and 451-473"
FT   CDS             complement(226927..227193)
FT                   /transl_table=11
FT                   /locus_tag="BPP1847"
FT                   /product="50S ribosomal protein L31"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1232"
FT                   /db_xref="GOA:Q7W9B8"
FT                   /db_xref="InterPro:IPR002150"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9B8"
FT                   /protein_id="CAE37148.1"
FT                   /translation="MKEGIHPEYREVVFMDVQTGNKFITRSTIHTRETVEMDGKTYPLF
FT                   KCDVTSESHPFYTGAQTRIVETGRVEKFRARFARTAGTVKSAS"
FT   misc_feature    complement(226954..227193)
FT                   /note="HMMPfam hit to PF01197, Ribosomal protein L31, score
FT                   4.5e-09"
FT   misc_feature    complement(226978..227034)
FT                   /note="PS01143 Ribosomal protein L31 signature."
FT   CDS             complement(227362..228216)
FT                   /transl_table=11
FT                   /locus_tag="BPP1848"
FT                   /product="putative tryptophan oxygenase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1233"
FT                   /db_xref="GOA:Q7W9B7"
FT                   /db_xref="InterPro:IPR004981"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9B7"
FT                   /protein_id="CAE37149.1"
FT                   /translation="MQPTPTQRPEAIVHDEKAQLDFARDMSYGDYLHLDELLGAQRPLS
FT                   PEHNEMLFIVQHQTSELWMKLMLHELRAAIAAIQQDRLQPAFKMLARVSKILEQLVSAW
FT                   DVLATMTPPEYSALRPYLAHSSGFQSYQYRQIEYLLGNKNAAMLQPHAHRADLLAQVRA
FT                   AFEAPSLYDEALRFLARSGLAVPAGALQRDWTQPYRADDQVEQAWLTVYRQSERYWNQY
FT                   QLGEKLTDLEDAFRLWRFRHVTTVERIIGFKRGTGGTSGVTYLRKMLEVVLFPEIWKLR
FT                   TDL"
FT   misc_feature    complement(227368..228171)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF03301, Tryptophan 2,3-dioxygenase,
FT                   score 3.2e-97"
FT   misc_feature    complement(227461..227490)
FT                   /note="PS00339 Aminoacyl-transfer RNA synthetases class-II
FT                   signature 2."
FT   CDS             complement(join(228244..228795,228799..228873))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP1849"
FT                   /product="conserved hypothetical protein (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1234"
FT                   /db_xref="PSEUDO:CAE37150.1"
FT   variation       complement(228796..228798)
FT                   /note="In-frame TAG stop codon in parapertussis; CAG in
FT                   pertussis"
FT   CDS             complement(228960..229637)
FT                   /transl_table=11
FT                   /gene="radC"
FT                   /locus_tag="BPP1850"
FT                   /product="DNA repair protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1235"
FT                   /db_xref="GOA:Q7W9B6"
FT                   /db_xref="InterPro:IPR001405"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9B6"
FT                   /protein_id="CAE37151.1"
FT                   /translation="MSLPEPLLRAGWPRERLLRHGAATLSDPELLALALRTGVAGCNAV
FT                   QLGHDLLRRFGGLRGLLGTSPAELQVVPGLGTAKACVLAAVLELARRTLEEDLVRQDAL
FT                   ANPDLVRRYCQAALGHRKVEHCIALYLDARLKLIICAEVARGTLTQAQIYPREIVREAL
FT                   RHHAAALILAHNHPGGTAAASAADIAMTRQIRQALALVDVRLIDHVIVAGAATVSMAAQ
FT                   GHL"
FT   CDS             229690..230166
FT                   /transl_table=11
FT                   /gene="fkpB"
FT                   /gene_synonym="slpA"
FT                   /locus_tag="BPP1851"
FT                   /product="FkbP-type peptidyl-prolyl cis-trans isomerase"
FT                   /EC_number="5.2.1.8"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1236"
FT                   /db_xref="GOA:Q7W9B5"
FT                   /db_xref="HSSP:1IX5"
FT                   /db_xref="InterPro:IPR001179"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9B5"
FT                   /protein_id="CAE37152.1"
FT                   /translation="MSAASENVNVLVRPDSYLTLHYRIVLASGPAEGSVFTDTFDGRPA
FT                   TLQMGSGQWAPGLEAALLDHAEGERFSVALSPAQAYGERNPDLIQKVTRAMLAEHAGAD
FT                   AAFEPGDLVEFAAPNGGRYSGVLKEINADWAMFDFNHPLAGTALRVDVAILGVL"
FT   misc_feature    229702..230154
FT                   /note="HMMPfam hit to PF00254, FKBP-type peptidyl-prolyl
FT                   cis-trans isomerase, score 0.00059"
FT   CDS             230163..231143
FT                   /transl_table=11
FT                   /gene="lytB"
FT                   /locus_tag="BPP1852"
FT                   /product="putative drug tolerance protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1237"
FT                   /db_xref="GOA:Q7W9B4"
FT                   /db_xref="InterPro:IPR003451"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9B4"
FT                   /protein_id="CAE37153.1"
FT                   /translation="MMTAEVTAADAEVLLAQPRGFCAGVDRAIDIVERALELHGAPIYV
FT                   RHEIVHNRYVVEDLRGKGAVFIDELDQAPAGAIVVFSAHGVSQAVRGEAEARGLRVFDA
FT                   TCPLVTKVHIEVARMRAAGREIVMIGHKGHPEVEGTLGQAQGGMYLVETVEDVAALQVS
FT                   DPGNLAYVTQTTLSVDDAAAVAGALKARFPGIVEPKKSDICYATQNRQDAVKLLAPECD
FT                   LVLVVGSTNSSNSNRLREVAERKGVAAYLIDGAHAIDPAWLQGRRSIGITAGASAPEVL
FT                   VQQVVERVRELGAVSVRTMPGLEESVAFPLPKGLSRKIAQTESLE"
FT   misc_feature    230199..231038
FT                   /note="HMMPfam hit to PF02401, LytB protein, score 2e-163"
FT   CDS             231140..231826
FT                   /transl_table=11
FT                   /locus_tag="BPP1853"
FT                   /product="putative glutathione-S-transferase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1238"
FT                   /db_xref="GOA:Q7W9B3"
FT                   /db_xref="HSSP:1E6B"
FT                   /db_xref="InterPro:IPR012335"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9B3"
FT                   /protein_id="CAE37154.1"
FT                   /translation="MTTTRGAARAAGGKMELYSYFRSSAAYRVRIALNLKGLPYDYRAV
FT                   HLLKDGGQQLAPQYRALNPNALVPALVDGDAVLTQSLAIVEYLEETHPQPPLLPSDALG
FT                   RARVRAIAQTIACDIHPLNNLRVLKYLKHELKVSEEAKNAWYKHWVELGLAGVEAMLAG
FT                   APQTGRFCHGDAPTLADLCLVPQLANARRFGCDLSAMPTLARIEAACAELPAFQQAAPA
FT                   VQPDAE"
FT   misc_feature    231173..231409
FT                   /note="HMMPfam hit to PF02798, Glutathione S-transferase,
FT                   N-terminal domain, score 3.1e-16"
FT   tRNA            complement(231876..231951)
FT                   /note="tRNA Thr anticodon CGT, Cove score 90.68"
FT   tRNA            232123..232198
FT                   /note="tRNA Asn anticodon GTT, Cove score 87.19"
FT   CDS             complement(232318..232653)
FT                   /transl_table=11
FT                   /locus_tag="BPP1854"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1239"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9B2"
FT                   /protein_id="CAE37155.1"
FT                   /translation="MAMHHARSGELIELRPLGESLRETVSQALVRADHLEVMRLVLPRD
FT                   QQLPSHAIDASAITIQCLEGAVMLTAQDTTQRMPAGTLVYLAPGVAHAVKALEDSTLLV
FT                   TLMLARP"
FT   CDS             join(232770..233516,233516..233866)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP1855"
FT                   /product="conserved hypothetical protein (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1240"
FT                   /db_xref="PSEUDO:CAE37156.1"
FT   misc_feature    232911..232934
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    join(232983..233516,233516..233806)
FT                   /note="HMMPfam hit to PF02492, Cobalamin synthesis
FT                   protein/P47K, score 1e-23"
FT   variation       233514..233516
FT                   /note="(C)3 in parapertussis; (C)4 in pertussis"
FT   CDS             complement(233919..234497)
FT                   /transl_table=11
FT                   /locus_tag="BPP1856"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1241"
FT                   /db_xref="GOA:Q7W9B1"
FT                   /db_xref="InterPro:IPR000415"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9B1"
FT                   /protein_id="CAE37157.1"
FT                   /translation="MSLAAQEQIFQAARTFNRYTEQSISDATLHELYELMKWGPTAMNS
FT                   QPGRFIFLRSAAARQRLAPALSPGNLEKTLAAPVTVIVAQDTQFYEHLPTQFSAYDARP
FT                   VFENNADAARATAMRNSSLQGAYLIVAARMLGLDAGPMSGFDAAKVDAEFFPDGRCKAN
FT                   FLVNLGYGDPAGNYPRGPRLAFDTAAQIL"
FT   misc_feature    complement(234027..234485)
FT                   /note="HMMPfam hit to PF00881, Nitroreductase family, score
FT                   7.8e-09"
FT   CDS             234614..235525
FT                   /transl_table=11
FT                   /locus_tag="BPP1857"
FT                   /product="probable LysR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1242"
FT                   /db_xref="GOA:Q7W9B0"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9B0"
FT                   /protein_id="CAE37158.1"
FT                   /translation="MDRLKAMQVFVEVADRGSLSAAAMHLGMSRAMVSRYLAELEAWVG
FT                   VRLLHRTTRRLSLTPAGSETLPRCRRMLEMVGDMREAVAAPDAEPRGLLRVTAAMSFGG
FT                   AQLAEAVAEFVRRHPAASIDLLLVDRAVNLVEERVDLAVRITNDLDPNLIGRRLADCRS
FT                   VVCAAPQYLQQHGAPARAEDLSLHNCLTHSYFGRSLWRFERAGEPVEVPVGGNITANET
FT                   DVLMRAALAGAGIVMLPTYLAAGQIAAGTLRPLLPDCAPPVLGIHGVYVSRKQMPLILR
FT                   TMLDFLAERFNPAPWDAALEGR"
FT   misc_feature    234623..234802
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family, score 3.9e-21"
FT   misc_feature    234665..234757
FT                   /note="PS00044 Bacterial regulatory proteins, lysR family
FT                   signature."
FT   misc_feature    234872..235489
FT                   /note="HMMPfam hit to PF03466, LysR substrate binding
FT                   domain, score 5.9e-44"
FT   tRNA            complement(236349..236424)
FT                   /note="tRNA Met anticodon CAT, Cove score 85.01"
FT   CDS             236488..237582
FT                   /transl_table=11
FT                   /locus_tag="BPP1858"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1243"
FT                   /db_xref="GOA:Q7W9A9"
FT                   /db_xref="InterPro:IPR005234"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9A9"
FT                   /protein_id="CAE37159.1"
FT                   /translation="MPMNDSEAILVLETALLCASQPMQFAEMRKLFGDDQDIDNTALRA
FT                   WLEALQAQWNERGLELVQLASGWRFQSRPQMQRYLERLNPEKPPKYSRAVLETLAIVAW
FT                   RQPVTRGDIEDIRGVTVSSQIVKVLEDRGWIEVIGHRDAPGRPALFATTRQFLDDLGLR
FT                   ALDELPPLESAQAAAALAGLDLGGAEVLVEAVDAVEGGAARDEADGDEAAGQVAASLGD
FT                   AQPEVAQAGVDGVESAVSPEPVLPVSADDDTNEPAETAAASLPGAGVAEPAHESAGAAP
FT                   DDGNGPVEVPPLQPDQISLPDEPAEARPHVPAPEVGPGEPQPEIVPAAPEPVTPPAPGR
FT                   DEADGVVSNPEDDEPAASGRLPKV"
FT   CDS             237579..239357
FT                   /transl_table=11
FT                   /locus_tag="BPP1859"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1244"
FT                   /db_xref="GOA:Q7W9A8"
FT                   /db_xref="HSSP:1VIO"
FT                   /db_xref="InterPro:IPR018496"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9A8"
FT                   /protein_id="CAE37160.1"
FT                   /translation="MKFGAVPVTTNTTMQDDNSFPDNESPVAQPPVGEPAASGEAGDGE
FT                   GAARARGRKLRTPFRRRRGDAAAAGEAGADEAGSQPAAQSEGDARASERDADQALAYLD
FT                   NAARIEQRLGKYLNSEAVMPKLHKVLADAGIGSRREMEELIVAGRVSVNGEPAHIGQRV
FT                   APNDQVRVNGKPIARPNAKKPPRVILYHKPAGEIVSHDDPGGRASVFARLPKLRTGKWL
FT                   SVGRLDLNTEGLLIFTTSGDMANRIMHPRYGTEREYAVRVLGEMDDAQRKSLTEGIELE
FT                   DGKAAFGSFEYLGGDGSNRWYRVTLQEGRNREVRRMFEAVGVTVSRLIRTRFGDIVLPR
FT                   NLRRGRWEELDGSLVTALMVQLGLLRDGDESEGRRKSRQPQSHDSALPPGFGTLERNGM
FT                   NGARIGRRGKLQGGRPGSAAACPSDPFGTGLMITGGYANGHPLGNDSAAGRGGKGKPAK
FT                   GKAGGDKPQRGQGRKAAGAQAGGQGGQGAAAKPAGARGGKKAGGRAAAPGAKGAGGRAG
FT                   GNKAASAGGKAAGVAKPASPTGNRGPAAPKPQRARRGGGGAGGGGGGRGDDWQPKGAGA
FT                   HESRLGFMGGRGGRGR"
FT   misc_feature    237948..238085
FT                   /note="HMMPfam hit to PF01479, S4 domain, score 2e-08"
FT   misc_feature    238134..238538
FT                   /note="HMMPfam hit to PF00849, RNA pseudouridylate
FT                   synthase, score 5.6e-14"
FT   misc_feature    238251..238295
FT                   /note="PS01149 Rsu family of pseudouridine synthase
FT                   signature."
FT   CDS             239822..240328
FT                   /transl_table=11
FT                   /locus_tag="BPP1860"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1245"
FT                   /db_xref="InterPro:IPR003728"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9A7"
FT                   /protein_id="CAE37161.1"
FT                   /translation="MADLFALTEEALAGMDIELVDVERAAMGLLRVTIDRVDGVRIEDC
FT                   EQVSRQLSHVYEVENIDYKRLEVGSPGVDRPLRNEAEFRRFAGERIEIKLREALDGRKV
FT                   FSGTLRAPEADGASGQDDTAGAGKAVFGLEFEAKKNDIQVLSFTLDDIERAKLDPVLDF
FT                   KGKKR"
FT   misc_feature    239840..240292
FT                   /note="HMMPfam hit to PF02576, Uncharacterized BCR, YhbC
FT                   family COG0779, score 4.3e-21"
FT   CDS             240325..241803
FT                   /transl_table=11
FT                   /gene="nusA"
FT                   /locus_tag="BPP1861"
FT                   /product="N utilization substance protein A"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1246"
FT                   /db_xref="GOA:Q7W9A6"
FT                   /db_xref="HSSP:1K0R"
FT                   /db_xref="InterPro:IPR012340"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9A6"
FT                   /protein_id="CAE37162.1"
FT                   /translation="MSREILLLVDALAREKNVTREVVFGALESALASAMKKRFKDDADI
FT                   RVSIDRETGGHEGFRRWLVVPDEAGLQEPDKQELLSEAREMAPDIEVGEYIEEALEPVE
FT                   FGRIGAQAAKQAILQKIRDAEREQVLNDFLDRGETIISGSIKRMDKGDVIIETGKIEAR
FT                   LPRSEMIPKENLRVGDRVRAFVLRVDHAARGQQLILSRTSPEFIRQLFENEVPEIEQGL
FT                   LEIKATARDPGVRAKIAVVAYDKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSED
FT                   PAQFVIGALAPANVESIVVDEDKHAMDVVVDEENLPKAIGAKGQNVRLASELTGWQINI
FT                   MTPEESLNRQETERAALRATFMSKLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEA
FT                   FDEDTINELRARARNALLTEAIAQEERLETAQDLLELEGITPELAAKLAERQVHTRDDL
FT                   AELSTDELAEIAGLQEEEASDLIMRARAHWFDEE"
FT   misc_feature    240340..240414
FT                   /note="PS00043 Bacterial regulatory proteins, gntR family
FT                   signature."
FT   misc_feature    240724..240930
FT                   /note="HMMPfam hit to PF00575, S1 RNA binding domain, score
FT                   1.1e-06"
FT   misc_feature    241246..241389
FT                   /note="HMMPfam hit to PF00013, KH domain, score 6.3e-05"
FT   CDS             241880..244789
FT                   /transl_table=11
FT                   /gene="infB"
FT                   /gene_synonym="ssyG"
FT                   /locus_tag="BPP1862"
FT                   /product="translation initiation factor IF-2"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1247"
FT                   /db_xref="GOA:Q7W9A5"
FT                   /db_xref="InterPro:IPR004161"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9A5"
FT                   /protein_id="CAE37163.1"
FT                   /translation="MSSNTVAQFATELKMPANVLLEQLRAAGVDLKSVDDAVTDSDKAK
FT                   LLESLRRAHGATEGKKITLTRRQTSEIRQADATGRSRTIQVEVRKKRVFVKRDPAEPVR
FT                   AEPAVETAAKPVEPPVAEAPAEPVAAPAAEPQPEQPAQAEAQPEPTPAAQAEPEPQPEP
FT                   QPEAAPAQAVAEPVEPAKNVSVTETEAEQARPEPVVHAQTELTSQTPAPVAQPSAPAES
FT                   PKSAKAEPAAAPKTTAKPGEIRRAAAPAAPDRAREEARRAAEAEAAALREMLSRPRKVL
FT                   RAPEPEPQAGALSGTLHKPAGKPATTAAPKKDAKPGAPGAKKTIKTAEVSSTWSDDSAR
FT                   KKPADNKPAVTTRDGWRAGGKGGRGGRNSRNQHQDRRHEQVQQEFIAREIHVPETISVA
FT                   DLAHKMSVKAAEVIKQLMKLGQMVTINQVLDQETAMIVVQEFGHTAIAAKLDDPEAFLD
FT                   ETAAVTEAEAEPRAPVVTVMGHVDHGKTSLLDYIRRAKVASGEAGGITQHIGAYHVETG
FT                   RGVVTFLDTPGHEAFTAMRARGAKATDIVILVVAADDGVMPQTREAIHHAKAGGVPLVV
FT                   AVNKIDKPEANPERVKQELVAEEVVPEEYGGDVPFVPVSAKTGAGIDDLLENVLLQAEI
FT                   LELKAPIEVPAKGLVIEARLDKGRGPVATILVQSGTLKRGDVVLAGASFGRVRAMLDEN
FT                   GKQIQTAGPSIPVEIQGLTEVPAAGDELMVLSDERKAREIALFRQGKFRDVKLARQQAA
FT                   KLESMFDNLGEGTQTLALIVKTDVQGSQEALVSSLTKLSTDEVRVQVVHAAVGGISESD
FT                   VNLAIASNAVVIGFNVRAEQSAKKLAETNGIDLRYYNIIYDAVDEVKAAMSGMLAPEKR
FT                   EEVIGLVEVREVYTISRIGTVAGCMVLDGVVRRDSQVRLLRNNVVQWTGHLDSLRRFKD
FT                   DVKEVKSGFDCGLTLRGNNDLQLGDQLEVFEIKEIARTL"
FT   misc_feature    243287..243790
FT                   /note="HMMPfam hit to PF00009, Elongation factor Tu GTP
FT                   binding domain, score 2.3e-53"
FT   misc_feature    243314..243337
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    243821..244048
FT                   /note="HMMPfam hit to PF03144, Elongation factor Tu domain
FT                   2, score 6.8e-17"
FT   misc_feature    244520..244753
FT                   /note="HMMPfam hit to PF03144, Elongation factor Tu domain
FT                   2, score 3.9e-07"
FT   misc_feature    244637..244705
FT                   /note="PS01176 Initiation factor 2 signature."
FT   CDS             244817..245218
FT                   /transl_table=11
FT                   /gene="rbfA"
FT                   /gene_synonym="p15b"
FT                   /locus_tag="BPP1863"
FT                   /product="ribosome-binding factor A"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1248"
FT                   /db_xref="GOA:Q7W9A4"
FT                   /db_xref="InterPro:IPR020053"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W9A4"
FT                   /protein_id="CAE37164.1"
FT                   /translation="MRRHKSKSIPGRNLRLADQIQKDLAGIIQREIDMTRAGLITLSGV
FT                   ELSADYAHAKVYFTVLGAEPDTAAALLNEKAGWLHSQLYKLLHIHTVPTLRFVHDLQIT
FT                   RGIEMSVLIDRANRPGPHSGVPDEPEDQS"
FT   misc_feature    244850..245155
FT                   /note="HMMPfam hit to PF02033, Ribosome-binding factor A,
FT                   score 5.1e-17"
FT   CDS             245263..245997
FT                   /transl_table=11
FT                   /gene="truB"
FT                   /gene_synonym="p35"
FT                   /locus_tag="BPP1864"
FT                   /product="tRNA pseudouridine synthase B"
FT                   /EC_number="4.2.1.70"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1249"
FT                   /db_xref="GOA:P59874"
FT                   /db_xref="InterPro:IPR014780"
FT                   /db_xref="UniProtKB/Swiss-Prot:P59874"
FT                   /protein_id="CAE37165.1"
FT                   /translation="MAKRRGLALDGVLLLDKPVGLSSNHALQRAKRTVDAAKAGHTGTL
FT                   DPFATGLLVCCMGRATKISGRMLEADKTYQAMLQFGEETDSGDLTGHIVARAPDGFAGV
FT                   EEAALRDVLSRFVGTIEQIPPMYSALKRDGKPLYEYARAGIELDRPPRQVTIRHIELLS
FT                   FSGMQAQIDVACSKGTYIRTLAQDIGRALGCHAHLAALRRTHVGPFSLDRAVTLEALQA
FT                   MPDAKQALLAMNELPAGLLPAT"
FT   misc_feature    245344..245805
FT                   /note="HMMPfam hit to PF01509, TruB family pseudouridylate
FT                   synthase (N terminal domain), score 2.9e-66"
FT   CDS             246014..247834
FT                   /transl_table=11
FT                   /gene="typA"
FT                   /gene_synonym="bipA"
FT                   /locus_tag="BPP1865"
FT                   /product="GTP-binding elongation factor"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1250"
FT                   /db_xref="GOA:Q7W9A3"
FT                   /db_xref="InterPro:IPR006298"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9A3"
FT                   /protein_id="CAE37166.1"
FT                   /translation="MTRALRNVAIIAHVDHGKTTLVDQLLRQSGTFRENQSVAERVMDS
FT                   NDIEKERGITILAKNCAVEYEGTHINIVDTPGHADFGGEVERVLSMVDGVLLLVDAVEG
FT                   PMPQTIFVTRKALALGLKPIVVVNKIDRPGARPDFVINATFELFDKLGATEEQLDFPVV
FT                   YASGLSGYAGLTDDVRSGDMRPLFEAIMKYVPQRDDDANGPLQMQIISLDYNSYVGKIG
FT                   VGRINRGRMRGNMDVAFRFGPDGEVQRGRINQVMKFSGLERVVVDEAEAGDIVLVNGIE
FT                   DLHIGSTITDPSTPEGLPVLRIDEPTLTMNFMVNTSPLAGREGKFVTSRQIRDRLEREL
FT                   KSNVALRVRDTGDDTVFEVSGRGELHLTILLENMRREGYELAVSRPRVVFKEIDGVKCE
FT                   PFEALTVDVEDAHQGGVMEELGRRKGDLQDMQPDGRGRTRLEYIIPARGLIGFQNEFLT
FT                   LTRGTGLMSHIFHEYAPLREGSIGERRNGVLISQDNGDAVAYALWKLQDRGRMFVSPGE
FT                   PLYEGMIIGIHSRDNDLVVNPIKGKQLTNVRASGTDEAVRLVPPIQMSLEYAVEFIDDD
FT                   ELVEITPKSIRLRKRYLQEHERRRASRENA"
FT   misc_feature    246020..246607
FT                   /note="HMMPfam hit to PF00009, Elongation factor Tu GTP
FT                   binding domain, score 9.8e-68"
FT   misc_feature    246047..246070
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   misc_feature    246143..246190
FT                   /note="PS00301 GTP-binding elongation factors signature."
FT   misc_feature    246632..246883
FT                   /note="HMMPfam hit to PF03144, Elongation factor Tu domain
FT                   2, score 5.8e-10"
FT   CDS             complement(247905..248630)
FT                   /transl_table=11
FT                   /locus_tag="BPP1866"
FT                   /product="putative toxin"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1251"
FT                   /db_xref="GOA:Q7W9A2"
FT                   /db_xref="HSSP:1BCP"
FT                   /db_xref="InterPro:IPR020063"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9A2"
FT                   /protein_id="CAE37167.1"
FT                   /translation="MKRISPRAGWLAASLLCLLLPGARAWAASELILVRGYGNCPSGYA
FT                   PLTYDQAHRPSLRARMRELSGNEPWPIHGLADGQYLGGKYGGELKRARLADIRGLRDHF
FT                   CLASGSDGAIGRGVHAWGHVPGWGAWQWRRTLPPATGLGHYSNVRVARLDDLPFGDLCA
FT                   VFTRDGNPVVQACISPQAGRLHRESYATLRRALETLRRQGLPLRVYVDHDRRPDFAAVP
FT                   DVPAYSITGLATCNRGGCM"
FT   misc_feature    complement(247911..248240)
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF02918, Pertussis toxin, subunit 2
FT                   and 3, C-terminal domain, score 2e-11"
FT   misc_feature    complement(248310..248588)
FT                   /note="HMMPfam hit to PF03440, Aerolysin/Pertussis toxin
FT                   (APT) domain, score 1.8e-06"
FT   misc_feature    complement(248550..248630)
FT                   /note="Signal peptide predicted for BPP1866 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.986 between residues 27 and 28"
FT   CDS             complement(248627..249043)
FT                   /transl_table=11
FT                   /locus_tag="BPP1867"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1252"
FT                   /db_xref="GOA:Q7W9A1"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9A1"
FT                   /protein_id="CAE37168.1"
FT                   /translation="MPPFKFTVPALAALLAALLAAWPLAHAGAVHDYPSAVIEAYHIGQ
FT                   LHTGSTPFVCARFHPEGQASPQALRIACAVQRYGKARRHFDEHVARIITCHAANRPTSL
FT                   RVESDVWTDPQIYRLFSRAEILSIAPCGVGGLLP"
FT   misc_feature    complement(248963..249043)
FT                   /note="Signal peptide predicted for BPP1867 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.956 between residues 27 and 28"
FT   CDS             complement(249192..249764)
FT                   /transl_table=11
FT                   /locus_tag="BPP1868"
FT                   /product="putative exported protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1253"
FT                   /db_xref="InterPro:IPR005269"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W9A0"
FT                   /protein_id="CAE37169.1"
FT                   /translation="MFGSARISRESPYYETCAAISAALAGAGFAIIAGGGPGIMEAANK
FT                   GAFEAGGTSVGLNISLPHEAHNNEYQTISLSFEYFYSRKATFFMHSMAYVAMPGGFGTL
FT                   DELFEALTLIQTGKVPPAPIVLVGSEFWHGLVDWLGEQLLANGMIAAHDLNLFIIEDDP
FT                   AKVVRKVVEFHDKQGRTDSQHAPSLPA"
FT   misc_feature    complement(249246..249647)
FT                   /note="HMMPfam hit to PF03641, Lysine decarboxylase family,
FT                   score 1.9e-53"
FT   misc_feature    complement(249675..249764)
FT                   /note="Signal peptide predicted for BPP1868 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.619) with cleavage site
FT                   probability 0.272 between residues 30 and 31"
FT   CDS             249874..252588
FT                   /transl_table=11
FT                   /gene="polA"
FT                   /gene_synonym="resA"
FT                   /locus_tag="BPP1869"
FT                   /product="DNA polymerase I"
FT                   /EC_number="2.7.7.7"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1254"
FT                   /db_xref="GOA:Q7W999"
FT                   /db_xref="HSSP:1KFS"
FT                   /db_xref="InterPro:IPR008918"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W999"
FT                   /protein_id="CAE37170.1"
FT                   /translation="MKKTLLLVDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKL
FT                   VQDHKAEYAVCVFDARGKTFRDDLFPDYKSHRPPMPEDLAAQIEPIHEAVRALGWPLLA
FT                   IEGVEADDIIGTLARQASAQGIDTIVSTGDKDLAQLVDPHVTLVNTMSGEVLDVAGVNS
FT                   KFGVPPERIVDYLMLVGDTVDNVPGVNKVGPKTAVKWLAEHGSIDALVAAADSVKGVAG
FT                   NNLREAIPNFPLTRTLLTVKCDCDLTGHVSDWEDLAWRERDAATLTALFDRYGFRTWLR
FT                   ELTGDQERLPTGDARAVPQAVAPAELDYRIITDWAAFDAWMALVEDAPLVALDTETTSL
FT                   DEMQARLVGLSMAVKPGVACYIPVAHRGPEAGDQLPRDEVIARLRGWLEDAGRAKLLHH
FT                   AKYDTHVFANEGVSLAGVAEDTMLQAYVLESHRGVGLNDLAQRFLGRSGVNYEDLCGKG
FT                   AKQIGFDEVAVPLAGHYSCEDSDFTLQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVV
FT                   ERNGVKVDAQELGRQSHKLGQEMLALEQRAYELAGQPFNLNSPKQLGEILFGRMGLPVV
FT                   RKTAGGAPSTDEEVLSKLAQDYPLPQVLLEYRGLSKLKSTYTDKLPRMINPATGRVHTH
FT                   YSQAAVITGRLASSDPNLQNIPVRTEAGRRVREAFIAEQGKLLSADYSQIELRIMAHVS
FT                   DDANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAINFGLIYGMGVFGLASNL
FT                   GITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVFGRRLQLPDIRAASGPRR
FT                   QGAERAAINAPMQGTAADLIKMAMVAVQDWLDAERLRTRMIMQVHDELVLEVPDEELAA
FT                   VAEALPRLMCDVATLRVPLVAEVGMGTNWEQAH"
FT   misc_feature    249880..250368
FT                   /note="HMMPfam hit to PF02739, 5'-3' exonuclease,
FT                   N-terminal resolvase-like domain, score 8e-85"
FT   misc_feature    250372..250680
FT                   /note="HMMPfam hit to PF01367, 5'-3' exonuclease,
FT                   C-terminal SAM fold, score 3.1e-28"
FT   misc_feature    250780..251358
FT                   /note="HMMPfam hit to PF01612, 3'-5' exonuclease, score
FT                   4.2e-39"
FT   misc_feature    251443..252582
FT                   /note="HMMPfam hit to PF00476, DNA polymerase family A,
FT                   score 1.4e-192"
FT   misc_feature    252061..252120
FT                   /note="PS00447 DNA polymerase family A signature."
FT   CDS             252699..253535
FT                   /transl_table=11
FT                   /locus_tag="BPP1870"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1255"
FT                   /db_xref="GOA:Q7W998"
FT                   /db_xref="InterPro:IPR003689"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W998"
FT                   /protein_id="CAE37171.1"
FT                   /translation="MLLLWILLATIAGGLIAVSIASWLAYRVFAKYLHHMVSLSVGVLL
FT                   SVALLHLLPEAFETAHADARALFALMLAGLIGFFVLEKIALLRHSHHHEGDGHHHHKGH
FT                   DRHEAGRGGVLILVGSSLHNLADGVLVAAAFLTDPMLGVLTAASIIVHEVPHKLGDFVV
FT                   LLNAGLARGRAFSLILFTSLCTAAGGVVGYFVLQEAQAAVPYVLVVAASSFLYISVADL
FT                   MPQMHERVSLADAVPQLLLVGAGVLLIYGVTSFMHHEHDPAHEHGQHAIEAADHRH"
FT   misc_feature    252699..252761
FT                   /note="Signal peptide predicted for BPP1870 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.957) with cleavage site
FT                   probability 0.730 between residues 21 and 22"
FT   misc_feature    join(252708..252776,252795..252860,252888..252941,
FT                   253083..253151,253218..253286,253305..253358,
FT                   253401..253454)
FT                   /note="7 probable transmembrane helices predicted for
FT                   BPP1870 by TMHMM2.0 at aa 4-26, 33-54, 64-81, 129-151,
FT                   174-196, 203-220 and 235-252"
FT   misc_feature    253020..253457
FT                   /note="HMMPfam hit to PF02535, ZIP Zinc transporter, score
FT                   8.4e-11"
FT   CDS             253590..254378
FT                   /transl_table=11
FT                   /locus_tag="BPP1871"
FT                   /product="putative carboxymethylenebutenolidase"
FT                   /EC_number="3.1.1.45"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1256"
FT                   /db_xref="GOA:Q7W997"
FT                   /db_xref="InterPro:IPR002925"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W997"
FT                   /protein_id="CAE37172.1"
FT                   /translation="MSFAAAAGSTAPTTIHTDTQGLLHGDFELAVPGGPVAAYYAAPAG
FT                   REQLPIVLVVQEIFGLHEHIKDVCRRLAHDGYLAVSVNLYQRQGDASRYDNIPGLVAEL
FT                   VSKVPDEQVHADLDASLAWAAAHGGDGARVGVTGFCWGGRTTWMYAARNPAVKAGVAWY
FT                   GRLSSGHGPLIKQVPLDVAGSLHAPVLGLYGGKDESIPLDDVRAMEARLQQGGAPAQAS
FT                   RIVVYPQAGHAFLADYRPSYRAADAQDGWRRMLDWFALYL"
FT   misc_feature    253695..254372
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF01738, Dienelactone hydrolase
FT                   family, score 7.2e-73"
FT   CDS             complement(254412..256070)
FT                   /transl_table=11
FT                   /locus_tag="BPP1872"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1257"
FT                   /db_xref="GOA:Q7W996"
FT                   /db_xref="InterPro:IPR003841"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W996"
FT                   /protein_id="CAE37173.1"
FT                   /translation="MSGLLPLLDFAGYVALLLWGVHMVQTGVQRAFGAALSIALGRALG
FT                   TRLRAFASGLGITAALQSSTATGLMITGFAAGGVVALVPALAAMLGANVGTTLIVQLLS
FT                   FDLTSLAPILILAGVWMFRRAAPGRTRDLGRVFIGLGLLLSLHQLVQLFQPFETAPLLG
FT                   VLLDALASQPVAAVLLAAALTWAAHSSVAVVVLVMSLASHGMVNPALAFALVLGANLGT
FT                   AINPMIEGVTGDDPAARRLPLGNLLTRVAGVLAGIILLPWLQPWLSGLAGDPAHAVANF
FT                   HTLFNVVIALVFLPILTPYAALLTRWLPKRADPNDPARPQYLDEWAHDVPAVALGNAAR
FT                   EALRMADMLQTLLLYARAGFKRDNRHRMVQARQLDSALDKLETAITTYLATLDQENMTR
FT                   EDHQRLDAILAFCSNIGHAGDIAYHGLLNHIGRLRKQGLLLSADQRASLDATLGELIAN
FT                   QRQAAALFVTDDLRQARALAGEKARFRALEAEAAETQLQQIKSGKVDAAEVGALYLDIL
FT                   RDLKGINSHVVGASAYPLLARHGELLPSRLRDAGN"
FT   misc_feature    complement(254790..256001)
FT                   /note="HMMPfam hit to PF02690, Na+/Pi-cotransporter, score
FT                   8e-36"
FT   misc_feature    complement(join(255162..255227,255267..255332,
FT                   255378..255443,255480..255545,255606..255671,
FT                   255711..255776,255807..255872,256008..256058))
FT                   /note="8 probable transmembrane helices predicted for
FT                   BPP1872 by TMHMM2.0 at aa 4-21, 66-88, 98-120, 133-155,
FT                   175-197, 209-231, 246-268 and 281-303"
FT   CDS             256232..257629
FT                   /transl_table=11
FT                   /gene="sdaA"
FT                   /locus_tag="BPP1873"
FT                   /product="L-serine dehydratase 1"
FT                   /EC_number="4.3.1.17"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1258"
FT                   /db_xref="GOA:Q7W995"
FT                   /db_xref="InterPro:IPR005131"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W995"
FT                   /protein_id="CAE37174.1"
FT                   /translation="MRVAVSVFDLFKIGIGPSSSHTVGPMRAALLFVQGLERDGLLARV
FT                   ASVRAELYGSLGATGKGHGTDKGVLLGFMGQAPDTVDPAAIAGMLQAVRANRRVSLLGR
FT                   HDVPFVEKEHMLFYRREALAEHPNGMKFHAFDADGQPLRESRYLSVGGGFVVTAGAANA
FT                   QVIGAHDQLPYPFRTGRELLDMCRASGHSVAGLMMRNELTWRGAAEIEQGLDRIWEVMQ
FT                   ECVARGCGIGHPEADGDLPGPLKVRRRAPELYRALTQRAERTLSDPLSVMDWVNLYAMA
FT                   VNEENAAGGRVVTAPTNGAAGIIPAVLHYYDRFVPAANRAGVHDFLLTAAAIGLLYKYN
FT                   ASLSGAEVGCQGEVGVACSMAAGALAAVQGGSVEQVENAAEIGMEHNLGLTCDPVGGLV
FT                   QIPCIERNAMASVKAVNAARMALRGDGHHYVSLDSVIKTMRETGADMKTKYKETARGGL
FT                   AVNIVEC"
FT   misc_feature    256235..256741
FT                   /note="HMMPfam hit to PF03315, Serine dehydratase beta
FT                   chain, score 3e-55"
FT   misc_feature    256757..257614
FT                   /note="HMMPfam hit to PF03313, Serine dehydratase alpha
FT                   chain, score 3.3e-170"
FT   CDS             complement(257820..258479)
FT                   /transl_table=11
FT                   /locus_tag="BPP1874"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1259"
FT                   /db_xref="InterPro:IPR003828"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W994"
FT                   /protein_id="CAE37175.1"
FT                   /translation="MSQLVRPTLELPAGRRKVLLHSCCAPCSGEVMEAMTASGIDYAIY
FT                   FYNPNIHPVKEYEIRKNENIRFAEEHGIEFIDADYDMDNWFERVKGMENEPERGIRCTA
FT                   CFDMRFERTALYAHEHGFDTITSSLGISRWKDMNQINGCGERAAARYDDLVYWTYNWRK
FT                   SGGSQRMIEISKRENFYQQEYCGCVYSLRDTNRHRRAQGRERIHLGVKFYGVEEKL"
FT   misc_feature    complement(257841..258428)
FT                   /note="HMMPfam hit to PF02677, Uncharacterized BCR,
FT                   COG1636, score 1.9e-130"
FT   CDS             complement(258515..261340)
FT                   /transl_table=11
FT                   /gene="glnE"
FT                   /locus_tag="BPP1875"
FT                   /product="glutamate-ammonia-ligase adenylyltransferase"
FT                   /EC_number="2.7.7.42"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1260"
FT                   /db_xref="GOA:Q7W993"
FT                   /db_xref="InterPro:IPR013546"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W993"
FT                   /protein_id="CAE37176.1"
FT                   /translation="MSSAPPFAAALAWSGHLRRRLDAHPDLAAWLANACAHPVSANVLA
FT                   AWQAELSGPDAPEVLPVEQCRGMLRKLRERVFLTLIVRDLGGQADLEEVVGAMTVLADI
FT                   AVGTAYRSVAAELAAVHGLPREQSTGDPQEMLIVGMGKLGGRELNVSSDIDLVMLYGDE
FT                   GETDGPRRISNHEFYGRLTRRMMPALSEVDADGQVFRTDLRLRPDGDAGPLAWSLDALE
FT                   HYLIGQGREWERYAWLKARLMPAQAFADSNPDAQARQLESLRVPFVYRKYFDFDALAAL
FT                   RALRERIRQDWQRRALARNGVDSANNIKLGDGGIREIEFIVQLSQLIRGGRMPALQRRG
FT                   LLEALHAERAAGLVPEGDAQKLEAAYRFLRRTEHALQYREDEQTHLLPADPAQRAALAA
FT                   ALGYEPAAFERTLAEHRAFVSQTFRNAFRLAGMGEEDDSPAPARTHANGHAMRPHAGAL
FT                   HDIEERLAGQIQRDFPEHAEDLLRRTETLLGSHRVRSLPDSSRHRLEALLPAALTAAAQ
FT                   TSAPMDAALRLFDLIETIAQRSAYLALLAEYPDTLARVARMVAASPWAAQYLTQHPLLL
FT                   DSLIDWRTLFEPLDFAQVAHQLAADLDACRLPDGEPDIERQMNLMRDVQRQASFQLLAQ
FT                   NLEGELTVEKLADQLSALADLLLAETIRRVWPLVNRRPGAEPHLAVIAYGKLGGKELGY
FT                   ASDLDLVFLFDDDREDAAELYAKLGRRMTSWLSTMTSSGRLYEVDLRLRPDGDAGLLAV
FT                   SLEAFEQYQRSHAWPWEHQALTRARYAAGDTEAGARFERIRADILVMPRDVQALRGEVL
FT                   GMRDKISAGHPNRSELFDVKHDRGGMVDVEFVTQYLVLCHAATHRVLVNNLGNIALLRL
FT                   AGEAGLIPAPLALAAGDAYRTLRRAQHQLRLKGVDKARVPPGQLAAERATVCELWQTVL
FT                   QDGTIAQAEVK"
FT   misc_feature    complement(258890..259504)
FT                   /note="HMMPfam hit to PF03710, Glutamate-ammonia ligase
FT                   adenylyltransferase, score 2.7e-76"
FT   misc_feature    complement(260480..261160)
FT                   /note="HMMPfam hit to PF03710, Glutamate-ammonia ligase
FT                   adenylyltransferase, score 4e-65"
FT   CDS             261374..265033
FT                   /transl_table=11
FT                   /locus_tag="BPP1876"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1261"
FT                   /db_xref="InterPro:IPR011836"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W992"
FT                   /protein_id="CAE37177.1"
FT                   /translation="MYKGTILQDASSCPPPVSVSTKILRLLFWSVFAIYGVLAVAFLGL
FT                   RYWVLPRADQWRPQIEQYASQALGSRVAIDSLSADWSGLNPRLNLSGVRIYDHQADPVL
FT                   SLPSVAAVLGWRSVLKLSPTLQSLRIDGADLLVRRDSADRLWVAGQSIDLAAPSDHGFT
FT                   ESPALRWLARQRELALHGVTLRWQDEARQAPELRLDGLDLLMRNGVLSHRFSLRVRPPA
FT                   QLAAKVSLRGELNRSLFARDGSNPASWSGQLYAEVQDAEPAAWAPWVAIPAAQGRYAAR
FT                   AWLQLDHGKFTDLTMDAALRGLNWRAGQSASVSVDSAQWRLQGAPGDLLQFSDLPLARS
FT                   ADGAGVSVTGQADGLWLNLPEIFEHPLALDRAQLDATLTEPAGQPLTLNLRRLQLANPD
FT                   LDATLHGAWRQQGKSAAGTADLRGSLARASMPAIHRYLPLEVNEDARLWLATGLPAGTV
FT                   HDAAITLAGDLDDFPFSEPGAQGQFRIAGRYQDAVVDYAPAEGKRKAWPRLEQLSGNFA
FT                   VDKVSLSLDSAGGGLVRTAADQVVSLGAVKAAIPDMEDHAQLHVEGQSSGAVPAYLALA
FT                   ANSPLGELLDGALAEAEGTGQWEVPLALDVPLLNAEDTKVEGRIVFAGNAFRFMPEMPM
FT                   LTQLRGELAFSELGMSAKEIHARFLGGPARIWGVLEQSSAPLRFEGTLTAAGLGEVSKA
FT                   PALKRLSGQSAYRGQLNYLKGGAVDISMESNLDGLAIDMPAPVGKPARGAMPFKLQWGP
FT                   ANDRGPRGRRWLSGSLAENINVLLEYDPADASRAYFARGALGVNRAASLPQRGLTVAAT
FT                   LPELDLDAWDAMKADFDEPSSGRRQPSRVPLLPQPDQINLAADRLRVAGYTLDDLKLAA
FT                   QRPTASQWRVTVDSRQALGTLEWTEASGAIAGRVTGRFKRLALAGEEDTRQEEDALSAG
FT                   NDLEDIPAIDLQAEEFSLYGKQLGSLQLIGTNMERGRLWRLDKLQIANDAARLDATGNW
FT                   RLDGTQRGLTVQANAEFSDLGKFLDRVGLPQTVGGGKGSLEGTVTWRNLPWSHNLAELE
FT                   GKARVSLDNGRFLHVNSRAARLLELLSLQSLQRLARLDANPGGLLREGFPFDTIRGDMS
FT                   LSQGVLTTEGYKLSGPVAGIVLAGNTNIVDERWDMRAVVVPNLDASGAAAVTAALVNPL
FT                   IGLGAFVTQWLLKQPLARAMSSEYAVTGTWDDPKVTPVESRAPTRQQEPQPEH"
FT   misc_feature    261452..261520
FT                   /note="1 probable transmembrane helix predicted for BPP1876
FT                   by TMHMM2.0 at aa 27-49"
FT   misc_feature    262592..262615
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             complement(265101..266357)
FT                   /transl_table=11
FT                   /gene="rho"
FT                   /gene_synonym="nitA"
FT                   /gene_synonym="psuA"
FT                   /gene_synonym="rnsC"
FT                   /gene_synonym="tsu"
FT                   /gene_synonym="sbaA"
FT                   /locus_tag="BPP1877"
FT                   /product="transcription termination factor Rho"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1262"
FT                   /db_xref="GOA:Q7W991"
FT                   /db_xref="HSSP:1A8V"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W991"
FT                   /protein_id="CAE37178.1"
FT                   /translation="MHLNELKALHVSQLLEMAAGLEIENANRLRKQELMFAIMKRRAKQ
FT                   GEQIFGDGVLEVLPDGFGFLRSPDTSYLASTDDIYISPSQIRRFNLHTGDSIEGEVRTP
FT                   KDGERYFALVKVDKVNGSPPEAIKHRIMFENLTPLHPNQVMRLERDIKSEENLTGRILD
FT                   IFAPIGKGQRGLIVAPPKSGKTVMMQHVAHAITTNYPDAVLIVLLVDERPEEVTEMQRT
FT                   VRGEVVASTFDEPATRHVQVAEMVIEKAKRLVEMKKDVVILLDSITRLARAYNTVVPAS
FT                   GKVLTGGVDANALQRPKRFFGAARNLEEGGSLTILGTALIETGSRMDEVIYEEFKGTGN
FT                   SEVHLERRLAEKRVYPSINLNKSGTRREELLIKPELLQKVWVLRKFIHDMDEIQSMEFI
FT                   LDKMRATKTNAEFFDMMKK"
FT   misc_feature    complement(265245..266093)
FT                   /note="HMMPfam hit to PF00006, ATP synthase alpha/beta
FT                   family, nucleotide-binding domain, score 7.3e-82"
FT   misc_feature    complement(265803..265826)
FT                   /note="PS00017 ATP/GTP-binding site motif A (P-loop)."
FT   CDS             complement(266470..266895)
FT                   /transl_table=11
FT                   /gene="trxA"
FT                   /gene_synonym="tsnC"
FT                   /gene_synonym="fipA"
FT                   /locus_tag="BPP1878"
FT                   /product="thioredoxin 1"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1263"
FT                   /db_xref="GOA:Q7W990"
FT                   /db_xref="HSSP:1F6M"
FT                   /db_xref="InterPro:IPR013766"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W990"
FT                   /protein_id="CAE37179.1"
FT                   /translation="MTVVCFNPSYTSNKNSGRMLHARVAQRNPRITIMSEQIKNVSDAS
FT                   FEADVLKSGQPVLVDYWAAWCGPCKMIAPILEEVAAEYAGRLTVAKLNVDENQDTAAKY
FT                   GVRGIPTLMLFKDGQAAATKVGALSKSQLTAFLDGAL"
FT   misc_feature    complement(266476..266793)
FT                   /note="HMMPfam hit to PF00085, Thioredoxin, score 1.5e-45"
FT   misc_feature    complement(266668..266724)
FT                   /note="PS00194 Thioredoxin family active site."
FT   CDS             267038..269050
FT                   /transl_table=11
FT                   /gene="parE"
FT                   /gene_synonym="nfxD"
FT                   /locus_tag="BPP1879"
FT                   /product="topoisomerase IV subunit B"
FT                   /EC_number="5.99.1.-"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1264"
FT                   /db_xref="GOA:Q7W989"
FT                   /db_xref="HSSP:1AJ6"
FT                   /db_xref="InterPro:IPR018522"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W989"
FT                   /protein_id="CAE37180.1"
FT                   /translation="MDLSVKCRFFSTDVGDNLATPRYTEASIRVLKGLEPVRQRPGMYT
FT                   RTENPLHIVQEVIDNAADEALAGYGKQIQVTLHGDGSISVEDDGRGIPVGLHPEENAPV
FT                   VELVFTRLHAGGKFDKQGGGAYAFSGGLHGVGVSVTNALATRLEVVVWRDGAVHRLVFA
FT                   GGDVIEALAPYPEGGRKKSGTRVRVWPDAKYFDSPAIPMAELTHLLRSKAVLLPGVKVS
FT                   LVNEKTGDTRTWQYQEGLRGYLAEALAGAELMIPFFEGQQYAGADHDSFAEGEGAQWVV
FT                   AWAEDGNVVRESYVNLIPTPAGGTHESGLREGLFGAVKGFAELHSLLPKGVKLLPEDVF
FT                   ARASFVLSAKVLDPQFQGQIKERLNSRDAVRLVGGFAKSALDLWLHSNVEYGKKLAELA
FT                   IRQAQARQRSAQKVEKRKSSGVAVLPGKLTDCESSDASRTEVFLVEGDSAGGSAKMGRD
FT                   KEFQAILPLRGKVLNSWEVDRDRLFANNEIHDISVAIGVDPHGPGDEPDLSGLRYGRIC
FT                   ILSDADVDGSHIQVLLLTLFYRHFPKLIEAGNVFVARPPLFRVDVPAQGKRPARKIYCL
FT                   DAGELEAAQDKLRKEGVRESAWSVSRFKGLGEMNPEQLWETTMNPDTRRLLPVGYGDLT
FT                   PGDTTRMFDMLMGKGESSQRRAWIEEKGNLAELDI"
FT   misc_feature    267170..267616
FT                   /note="HMMPfam hit to PF02518, Histidine kinase-, DNA
FT                   gyrase B-, and HSP90-like ATPase, score 8.8e-22"
FT   misc_feature    267752..268279
FT                   /note="HMMPfam hit to PF00204, DNA gyrase B, score 2.2e-20"
FT   misc_feature    268364..268390
FT                   /note="PS00177 DNA topoisomerase II signature."
FT   misc_feature    268808..269017
FT                   /note="HMMPfam hit to PF00986, DNA gyrase B subunit,
FT                   carboxyl terminus, score 1.3e-24"
FT   CDS             269050..269661
FT                   /transl_table=11
FT                   /locus_tag="BPP1880"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1265"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W988"
FT                   /protein_id="CAE37181.1"
FT                   /translation="MAQAPDSSVPVRMVVDLTVDDYAAFTAYAYQRPALRRRRHASHLR
FT                   FAVLLAAGLLAVILLRVWDGRQLDWGAALPAYAQALVVGLAVFALLAVGYEYALPRLAR
FT                   GNVRRALGRQPDNPFLGRHTLDFGPRGVDDAAAGASGTMPWEAVGQVEETASHLYLFIS
FT                   PLQGVIIPKRGQSADVLQAVRAQLRAHVPGAALADAADKQ"
FT   misc_feature    join(269170..269238,269281..269349)
FT                   /note="2 probable transmembrane helices predicted for
FT                   BPP1880 by TMHMM2.0 at aa 41-63 and 78-100"
FT   CDS             269679..271994
FT                   /transl_table=11
FT                   /gene="parC"
FT                   /locus_tag="BPP1881"
FT                   /product="topoisomerase IV subunit A"
FT                   /EC_number="5.99.1.-"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1266"
FT                   /db_xref="GOA:Q7W987"
FT                   /db_xref="HSSP:1AB4"
FT                   /db_xref="InterPro:IPR013757"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W987"
FT                   /protein_id="CAE37182.1"
FT                   /translation="MSDSNQPGLFDGGATDPHEAITLGRYAEQAYLDYAVSVVRGRALP
FT                   DVGDGQKPVQRRILYAMQAMGLAAGAKPVKSARVVGDVLGKYHPHGDQAAYDAMVRMAQ
FT                   DFSLRYPLIDGHGNFGSRDGDNAAAMRYTEARLTPFSKLLLDELEEGTVDFVPNYDGSQ
FT                   QEPAMLPARLPVMLLNGASGIAVGMATEIPSHNLREVAQACVALIRNPKLPQEELLALV
FT                   PGPDFAGGGQIITPAADIAQIYATGRGSLKARARWQFEEMARGQWQLVVTELPPGTSGQ
FT                   KVLEEIEEITNPKVRAGKKSLSAEQQQAKAVMLSLLDAVRDESGKDAAVRLVFEPKTSR
FT                   VDRDEFVNTLLAQTSMESNVPVNVVCIGTDGRPRQKSLRDVLEEWVAFRTDTVVRRTRH
FT                   RLDKVLDRIHVLEGRMVVYLNVDEVIQTIREAEEPRAALMARFGLTERQAEDILEMRLR
FT                   QLARLEGIKIEQELAGKREEQLRLQDLLDNPGSLKRLLIKEIEGDAKQYGDDRRTLIET
FT                   AERAVLETKVVDEPVTVIVSQKGWLRARQGHGHDAGQFSFKQGDDLYGAFECRTTDTLI
FT                   AVGDNGRVYSVAVSGLPSARGDGQPVTTMIDLEAGTRIVHTIAAASDSRWLLATRRGFG
FT                   FAARLSDMSSRQRAGKQFITLEKGDELLRPVPLFEGATQLALLSAKGKFLVFGLDEVKS
FT                   LSGGGRGTILMGLDTADKLDQTVPIGAAGLRAAGIYRNKQTEDILAGAALAPYVGKRAR
FT                   KGRQLDVRPRQPVLSPVF"
FT   misc_feature    269802..271202
FT                   /note="HMMPfam hit to PF00521, DNA gyrase/topoisomerase IV,
FT                   subunit A, score 7.8e-228"
FT   CDS             271997..273208
FT                   /transl_table=11
FT                   /locus_tag="BPP1882"
FT                   /product="putative membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1267"
FT                   /db_xref="InterPro:IPR007349"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W986"
FT                   /protein_id="CAE37183.1"
FT                   /translation="MNDGTAAQRLAHLDALRGFALFGILVVNIGVFASVYYGTGLPDPA
FT                   FSRPLDQWVNVLVAVLFESKFYLLFSFLFGYSFTLQIDAAQRAGAAFAPRFLRRLAGLA
FT                   VLGLAHAVLLYHGDILLTYAVLGALLLALRRTAPERALRWACWLALLAGLGWLALGVLS
FT                   LMTPQDPATLALTQEDALAALQAYRGTIGTTIARHIHDLTHGVWMVVLLVQGPFVLAMF
FT                   LAGLALGRRHALADPLAHPRLLRAVLAVGLPLGAAGAAVYAWSGLPGQPLGIDLIGLGA
FT                   GMLTAPLLSASYAAALLLAMRRPAGARLARWLAPAGRMALTNYLLQSLVCAVLFTAWGL
FT                   RWVGTLAPLSVLGLAVLVFALQLPWSAWWLRRHAYGPVEWLLRALTLARWPAWRIEPPP
FT                   AARR"
FT   misc_feature    join(272042..272110,272153..272221,272282..272341,
FT                   272351..272407,272426..272494,272615..272683,
FT                   272720..272788,272825..272893,272954..273022,
FT                   273035..273103)
FT                   /note="10 probable transmembrane helices predicted for
FT                   BPP1882 by TMHMM2.0 at aa 16-38, 53-75, 96-115, 119-137,
FT                   144-166, 207-229, 242-264, 277-299, 320-342 and 347-369"
FT   CDS             complement(273205..275805)
FT                   /transl_table=11
FT                   /locus_tag="BPP1883"
FT                   /product="conserved inner membrane protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2220"
FT                   /db_xref="InterPro:IPR011853"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W985"
FT                   /protein_id="CAE37184.1"
FT                   /translation="MKNESSTTTADLEQLVAEADRGGRHAGGVAGATLAAGALVWSLFQ
FT                   LWYASPLPFSLHWGIFNDTEARALHLGTAMFLGYLAYPATKRSARDRMPWYDWVLALAA
FT                   GFCGAYLYLFYNELATRPGQPTSMDVATAVAGLLLLLEVTRRALGLPMTVLGAVFVLYA
FT                   LAGPWLPDVLAHRGASIERLMSHMWLTTEGVYGVALGVSVSYIFIFVLLGSLLDKCGAG
FT                   NYMMQVSFALLGHLRGGPAKVAVVSSAVNGLVSASSVANVVTGGIFTIPLMKKAGYGGV
FT                   RAGAIETASSVNGQIMPPVMGAAAFLMIDYVGIPYTDIIRHAILPASISYIALFYIVHL
FT                   EALKLGIEPMMAAGKPRTPLQKLAGWGMGISGTLIAMGLVYWIGVGVQAVAGAAAIWIL
FT                   LAMLVALNIWLLRVAARHPDLPTEIDVNHPVRPEPWPTVRAGLHFLIPIGILVWCLSVE
FT                   ELSAGLSAFWAAAAMLLQMVTQRPLTAWFRGQAIAPAALLGWRDAIGGLQDGARNMIGI
FT                   AIACGTAGLIVGAITLTGLGLRMTAFVELVSMGNVLLMLIFTAIVCLILGLGMPTTANY
FT                   ILMATLMAPVVVELGAQNGLIIPLIAVHMFVFYYGIMADITPPVGLATFAAAAISGADP
FT                   IKTGVQGVTYALRTAVLPFMFVFNPLLLLIDVNSWTELILVAGSATLASLTFAAATLGW
FT                   FRVRCTVLEIVVLLAVTFMLFRPDWLLDQVSERYQARPAAEVVQTAAALPHNGRLVAVL
FT                   RGINLEGDELTKTVAVALPALDEGETLQGEAAGRKRLTDAGLTIVALGDQVQIGGVRFG
FT                   STARRAGWEQGWDVLELRVPNPARPAEFWAYLPGLVLLALVWFAQGRRQRAAAR"
FT   misc_feature    complement(join(273238..273288,273658..273708,
FT                   273730..273795,273811..273876,273916..273981,
FT                   274012..274077,274099..274164,274195..274260,
FT                   274573..274638,274651..274716,274777..274833,
FT                   274864..274929,275158..275223,275299..275364,
FT                   275380..275430,275461..275511,275551..275601,
FT                   275662..275727))
FT                   /note="18 probable transmembrane helices predicted for
FT                   BPP1883 by TMHMM2.0 at aa 26-48, 68-85, 98-115, 125-142,
FT                   147-169, 194-216, 292-314, 324-343, 363-385, 389-411,
FT                   515-537, 547-569, 576-598, 608-630, 643-665, 670-692,
FT                   699-716 and 839-856"
FT   CDS             complement(275912..276916)
FT                   /transl_table=11
FT                   /locus_tag="BPP1884"
FT                   /product="putative cell surface protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2219"
FT                   /db_xref="InterPro:IPR011852"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W984"
FT                   /protein_id="CAE37185.1"
FT                   /translation="MGKSVKHTLGHRKAFSLAAACAAVALAWAAPTPAAAQQKFVSIGT
FT                   GGVTGVYYAAGGAICRLVNKDRASHGVRCSVESTGGSVFNVNTIKAGELDLGVVQSDVG
FT                   FNAYNGEGQFKQGGAYKKLRSVFSIHPEPFTVLARKEAGIKSFEDFKGKRFNVGNPGSS
FT                   TRASMEELLASMGWTLKDFSLASELRPDEHGPALCDGKIDGFFYGVGHPSANIQDPTTT
FT                   CGAQLVSLTGPAVDKLVDKYPYYALATIPGGLYPNNPQDTKTYGVTATFVTSEDVPEQT
FT                   VYLVVKAVFDNFEDFKKLHPAFANLKAADMVKNGLSAPLHPGAQKYFKEKGLL"
FT   misc_feature    complement(join(276728..276793,276824..276877))
FT                   /note="2 probable transmembrane helices predicted for
FT                   BPP1884 by TMHMM2.0 at aa 13-31 and 41-63"
FT   misc_feature    complement(276830..276916)
FT                   /note="Signal peptide predicted for BPP1884 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.625 between residues 29 and 30"
FT   CDS             complement(277025..278365)
FT                   /transl_table=11
FT                   /locus_tag="BPP1885"
FT                   /product="putative aminotransferase"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2218"
FT                   /db_xref="GOA:Q7W983"
FT                   /db_xref="HSSP:1DKA"
FT                   /db_xref="InterPro:IPR015421"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W983"
FT                   /protein_id="CAE37186.1"
FT                   /translation="MSTTHVLHRSLRHTPPVAVRGEGVWLYDQAGRAYLDGSGGAAVSC
FT                   LGHNHPDVRAAMHAQIDALAYAHTGFFSTEIAERLADRLVADAPAGTSHAYFVSGGSEA
FT                   IEAALKMARQYFVEIGQPQRRHLVARRQSYHGNTLGALAVGGNEWRRAQFAPLLIDVAH
FT                   VAPCYAYRDQREDESAEQYGERLARELEDTFQRLGPDTVIAFVAEPVVGATAGALTAVP
FT                   GYFRRIREICDRYGILMIADEVMCGMGRTGTLYAVEQEEIVPDLITIAKGLGGGYQPIG
FT                   AVMAQGRIVDAMSKGSGFFQHGHTYLGHATACAASLAVQEVIRRDGLLARVRQQGDGLR
FT                   QRLMQALGAHPHVGDIRGRGLFLGVELVRDRAAKATFDPELALHARIKREAMARGLMVY
FT                   PMGGTIDGRHGDHVLVAPPFIIADDELDQLVERLAGAIDAAIAQTRA"
FT   misc_feature    complement(277043..278353)
FT                   /note="HMMPfam hit to PF00202, Aminotransferase class-III,
FT                   score 2.1e-119"
FT   misc_feature    complement(277538..277651)
FT                   /note="PS00600 Aminotransferases class-III
FT                   pyridoxal-phosphate attachment site."
FT   CDS             complement(278406..279434)
FT                   /transl_table=11
FT                   /locus_tag="BPP1886"
FT                   /product="putative regulator (SIS family)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2217"
FT                   /db_xref="GOA:Q7W982"
FT                   /db_xref="InterPro:IPR001347"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W982"
FT                   /protein_id="CAE37187.1"
FT                   /translation="MFFIFSEIYHVFFILFRAMPPTPAPSMLETLQSLLDNLPAELQRA
FT                   ARWVAAHPAEVGLWSMRRQAQAVGVAPATMLRLARAAGCGSYEDFRAPFQQALTAAGGS
FT                   GWRDRAAELQAAQDAGAAPGHDVLTGLQAQAIGSIRALNPPAAFDAAARTLLAAGQVGF
FT                   LGTRSAFGIAHQMRYAYQLVRRNGLLIDGLGGAPAEQIDNLQAGDALVAISQAPYPAAT
FT                   VHLARQASQRGVTVVALTDDPLSPLALEAGHVLLFARPERERVYAEPAQRGPGSFFHTT
FT                   AGLLGLAEHLIARLAACGGETALARLAEIEARLQAEQVYWSPAHARRDKARPGRGMPRE
FT                   AA"
FT   misc_feature    complement(278553..278981)
FT                   /note="HMMPfam hit to PF01380, SIS domain, score 0.017"
FT   CDS             279564..280175
FT                   /transl_table=11
FT                   /locus_tag="BPP1887"
FT                   /product="putative MarR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2216"
FT                   /db_xref="GOA:Q7W981"
FT                   /db_xref="InterPro:IPR000835"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W981"
FT                   /protein_id="CAE37188.1"
FT                   /translation="MNELQAYHLSRNQFCPNLFFLAMNNVAQTDTPQQYDLRILRALRR
FT                   ITRSIALHSRQLAAVSHITAPQLMCLRAVIAGGPMTATAISREIHVSPSTVVGILDRLE
FT                   DKGLIRRERGREDRRIVFVTATEGGRTLAAEAPSPLQKHLADGLNALPELEQATITLAL
FT                   ERIVALMEQEGHAVEAAGEGSPPILEMPTGGAPPESGLVV"
FT   misc_feature    279750..280061
FT                   /note="HMMPfam hit to PF01047, MarR family, score 1.5e-18"
FT   misc_feature    280041..280070
FT                   /note="PS00339 Aminoacyl-transfer RNA synthetases class-II
FT                   signature 2."
FT   CDS             280172..280732
FT                   /transl_table=11
FT                   /gene="ectA"
FT                   /locus_tag="BPP1888"
FT                   /product="L-2,4-diaminobutyric acid acetyltransferase"
FT                   /EC_number="2.3.1.-"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP2215"
FT                   /db_xref="GOA:Q7W980"
FT                   /db_xref="InterPro:IPR000182"
FT                   /db_xref="PDB:3D3S"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W980"
FT                   /protein_id="CAE37189.1"
FT                   /translation="MRKDETSNTSPDISVAQPASALRYHLRPPRRNDGAAIHQLVSECP
FT                   PLDLNSLYAYLLLCEHHAHTCVVAESPGGRIDGFVSAYLLPTRPDVLFVWQVAVHSRAR
FT                   GHRLGRAMLGHILERQECRHVRHLETTVGPDNQASRRTFAGLAGERGAHVSEQPFFDRQ
FT                   AFGGADHDDEMLLRIGPFTHPPH"
FT   misc_feature    280373..280618
FT                   /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT)
FT                   family, score 1e-07"
FT   CDS             280843..282150
FT                   /transl_table=11
FT                   /gene="ectB"
FT                   /locus_tag="BPP1889"
FT                   /product="diaminobutyrate--pyruvate aminotransferase"
FT                   /EC_number="2.6.1.46"
FT                   /note="Similar to Halomonas elongata
FT                   diaminobutyrate--pyruvate aminotransferase EctB
FT                   SWALL:ECB2_HALEL (SWALL:O52250) (421 aa) fasta scores: E():
FT                   1.1e-94, 58.29% id in 422 aa, and to Marinococcus
FT                   halophilus diaminobutyrate--pyruvate aminotransferase EctB
FT                   SWALL:ECTB_MARHA (SWALL:O06060) (427 aa) fasta scores: E():
FT                   1.3e-86, 50.35% id in 425 aa"
FT                   /db_xref="GOA:Q7W979"
FT                   /db_xref="HSSP:1DKA"
FT                   /db_xref="InterPro:IPR015421"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W979"
FT                   /protein_id="CAE37190.1"
FT                   /translation="MDLKIFDRMESEVRGYIRSFPVIFSQARGSLLIDEEGNEYIDFFS
FT                   GAGTLNYGHNNPVFKERLLEYLHSDGVVHGLDMATSAKKRFLETVDRVLLKPRNWQYTL
FT                   QFTGPTGTNAVEAALKLARQVKGRSNIISFTHGFHGVSGGSLAATANAKFRDAAGVSLG
FT                   NTTFMPYDGYFGPDVDTIAYIERMLDDPSSGLDKPAAVIVETVQGEGGVNVATLRWLKD
FT                   LQKLCRRHDMLMIVDDIQVGCGRTGSFFSFEAAGIQPDIITLSKSLSGFGLPMSLVLMK
FT                   PELDVWKPGAHSGTFRGNNLAFVTATQALETYWSSDAFSNEVQRKERLVRDWLENLAHS
FT                   YPNAGLAVRGRGLIQGLVATAEPELANRIARKAFERGVVIETSGAQDEVLKLLPALTIE
FT                   DELLTRGLDLIEASVADALSEEQPAAQVLKFGGKRR"
FT   misc_feature    280873..282096
FT                   /note="HMMPfam hit to PF00202, Aminotransferase class-III,
FT                   score 4.8e-89"
FT   misc_feature    281629..281658
FT                   /note="PS00599 Aminotransferases class-II
FT                   pyridoxal-phosphate attachment site."
FT   CDS             282147..282542
FT                   /transl_table=11
FT                   /gene="ectC"
FT                   /locus_tag="BPP1890"
FT                   /product="L-ectoine synthase"
FT                   /note="Similar to Marinococcus halophilus L-ectoine
FT                   synthase EctC SWALL:ECTC_MARHA (SWALL:O06061) (129 aa)
FT                   fasta scores: E(): 1.2e-29, 58.87% id in 124 aa, and to
FT                   Halomonas elongata L-ectoine synthase EctC SWALL:ECC1_HALEL
FT                   (SWALL:Q9ZEU6) (130 aa) fasta scores: E(): 2e-23, 50.76% id
FT                   in 130 aa"
FT                   /db_xref="GOA:Q7W978"
FT                   /db_xref="InterPro:IPR014710"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W978"
FT                   /protein_id="CAE37191.1"
FT                   /translation="MIVRNVKDVMGTEDEVRTDTWVSRRVLLKKDGMGFSFHETTIFPG
FT                   TRTHIHYKNHLEAVWCIEGDGSIETIADGKTYELGPGVVYALNENDEHWLCGGKQPLRV
FT                   ICVFNPPLTGQEVHDAEGVYALVEEAA"
FT   CDS             282561..283487
FT                   /transl_table=11
FT                   /locus_tag="BPP1891"
FT                   /product="putative L-proline 4-hydroxylase"
FT                   /note="Similar to Dactylosporangium sp L-proline
FT                   4-hydroxylase SWALL:O06499 (EMBL:D78338) (272 aa) fasta
FT                   scores: E(): 4.8e-23, 35.18% id in 270 aa, and to
FT                   Streptomyces coelicolor putative hydroxylase sci39.14
FT                   SWALL:Q93RV9 (EMBL:AL591322) (280 aa) fasta scores: E():
FT                   9.9e-56, 51.62% id in 277 aa"
FT                   /db_xref="GOA:Q7W977"
FT                   /db_xref="InterPro:IPR008775"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W977"
FT                   /protein_id="CAE37192.1"
FT                   /translation="MISPAQDPYASRTDRSSAIIARQDPVVYGEGKFADALSADQVQSY
FT                   ERDGFLLLENLFSDEEVAALLAEVERMTRDPAIVRREEAITEPGSNAVRSIFMVHVLSP
FT                   ILGRLVRDPRLANAARQILGAEVYVHQSRANMKPGFKGKEFYWHSDFETWHVEDGMPSM
FT                   RALSCSVLLTDNNEANGPLMLVPGSHRQFISCVGETPRDHYKQSLKKQEYGVPDPVSLQ
FT                   LLAEQGGISTMTGKAGSVVFFDCNTMHGSNSNISPWPRANVFMVYNSMENTLNPPKYGL
FT                   NPRPEHIATRQAFKAVRPLDSLKLVER"
FT   CDS             283739..284761
FT                   /transl_table=11
FT                   /gene="kdgT"
FT                   /locus_tag="BPP1892"
FT                   /product="2-keto-3-deoxygluconate permease"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1811"
FT                   /db_xref="GOA:Q7W976"
FT                   /db_xref="InterPro:IPR004684"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W976"
FT                   /protein_id="CAE37193.1"
FT                   /translation="MTTEVSRVPFYTTMMKVPGGLMLLPLILGSLLGTFAPDALAIGGF
FT                   TTALFKNSALPLIALLIFATGTQVNMRTGGPILATAGTILLMKTLVPATLIILLGHFVG
FT                   LDGVLGISILAMLAAFDNSNGGLWLAYTGQYGDSRDRGAYVASAVNDGPFFSLLFLGAS
FT                   GLADIPTIALVAALVPFLLGVVVGNLDIEWRNVLKPVPNIVIPFFAFALGTGINLGAVI
FT                   SGGMSGLVLGLLISPITGALVYFGYRYILRRGGKSGLGFAAGTTAGNAIATPAVVAAAD
FT                   PSFQPYVATATAQVAACVLISSILAPVLASYFLKRAGELKPVEQEPQDERTGQPAEVSL
FT                   "
FT   misc_feature    join(283796..283849,283862..283930,283967..284035,
FT                   284063..284131,284168..284236,284246..284305,
FT                   284342..284410,284423..284491,284510..284578,
FT                   284606..284674)
FT                   /note="10 probable transmembrane helices predicted for
FT                   BPP1892 by TMHMM2.0 at aa 20-37, 42-64, 77-99, 109-131,
FT                   144-166, 170-189, 202-224, 229-251, 258-280 and 290-312"
FT   CDS             284762..285979
FT                   /transl_table=11
FT                   /locus_tag="BPP1893"
FT                   /product="conserved hypothetical protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1812"
FT                   /db_xref="InterPro:IPR010737"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W975"
FT                   /protein_id="CAE37194.1"
FT                   /translation="MGGPYIGIVADDLTGSGDTAVQFVRAGWATQLSVGGAEQALADPA
FT                   VRPAEVLAVTTHSRPLAAADAAAVVRGEVERLRAAGVQRLYKKVDSTLRGAFKAEIDAA
FT                   RLAWGEDAIAVVCPAFPVTGRTVRQGVLYVGDRPVTETSAATDPVTPVTESHIPTLLGC
FT                   AQLAAQAGETPAELARRIAAAAPVVVVDALDDADVQRLARAIGVLGQRAVPIGSGGLAA
FT                   PLARVWAGGQAAGPVLVVVTSQHSAARQQAAALQQAGARTWAPTLAQLADDRNWAAWTA
FT                   EVEAAEHGMPAVDALMLLAPEGRLAGLDADSVARRLGELAARLVLAHGAAGVVATGGDG
FT                   ASAVLAALQASGIALVDEVTGGVPLGTLTGGQAAGLPVVTKAGGFGEQDVLIRAAQAIR
FT                   ERRFTK"
FT   CDS             285976..287031
FT                   /transl_table=11
FT                   /gene="pdxA"
FT                   /locus_tag="BPP1894"
FT                   /product="putative pyridoxal phosphate biosynthetic
FT                   protein"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1813"
FT                   /db_xref="GOA:Q7W974"
FT                   /db_xref="HSSP:1PS6"
FT                   /db_xref="InterPro:IPR005255"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W974"
FT                   /protein_id="CAE37195.1"
FT                   /translation="MTQDATPSRIPTLAVTLGDVAGIGPEITAKMLLGHDELRQRARLL
FT                   VVGDAAVLAQAVQAVGGDPARVRVIATPAEATNQPGSIEVIQAGPSLAHVPPGQLSAEA
FT                   GDGSVRYVTTACALARDGLIDGIVTAPLNKAAMHMAGHKWPGHTELLAHEFGVKTFSLV
FT                   LSAGDLYIFHATTHVSLRQAIEDVNPQRMRAVLRLAGSFARALGRADHPVAVAGLNPHA
FT                   GENGIFGTEDAEILAPAVAQANAEGILAAGPIPADALFPQAVRGKWKFVIACYHDQGHA
FT                   PFKSVYGDDGVNITVGLPVVRVSVDHGTAFDIAGKGIAREDSLVLAAERAAQLAPGWHQ
FT                   VWETARSTTGG"
FT   CDS             287036..287938
FT                   /transl_table=11
FT                   /locus_tag="BPP1895"
FT                   /product="probable GntR-family transcriptional regulator"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1814"
FT                   /db_xref="GOA:Q7W973"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W973"
FT                   /protein_id="CAE37196.1"
FT                   /translation="MALSAIEPFALDRSGATPLHAQVADAIRNHIRDHRLTAGTVLPSE
FT                   AALCYSFGVARSVVRQALGALVAEGLIRRDPGRAPVVAPPREHRRMVQRSAGLYEQFAG
FT                   LGVALRTRVLACRPAEPPPEVAAFFGTTETLLLERLRSVDAQPLAYVRTWLPRAAIAGL
FT                   AADHLQDASLHRVLAQRFGLRPGRGRNRIRAVAAEAALAQALDVAPGSPLLMLEGQGLD
FT                   QDGHPLEWFTTWHRPENLVFDVDVGQERESVQPALTCGTAAVAPPAVAAPPSGALDAVE
FT                   QSLLQALQAVRRARGDQQE"
FT   misc_feature    287102..287281
FT                   /note="HMMPfam hit to PF00392, Bacterial regulatory
FT                   proteins, gntR family, score 3.5e-17"
FT   CDS             join(288015..288635,289676..289912)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BPP1896"
FT                   /product="conserved hypothetical protein (pseudogene)"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1815"
FT                   /db_xref="PSEUDO:CAE37197.1"
FT   misc_feature    288018..288374
FT                   /note="HMMPfam hit to PF03476, MOSC N-terminal beta barrel
FT                   domain, score 4.8e-39"
FT   CDS             complement(288635..289585)
FT                   /transl_table=11
FT                   /locus_tag="BPP1897"
FT                   /product="transposase for IS1002"
FT                   /note="transposase for IS1002 element"
FT                   /db_xref="GOA:Q79GB8"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q79GB8"
FT                   /protein_id="CAE37198.1"
FT                   /translation="MNNHKHARLTRLGRALLVNRVMQQNWTMRQASQAAGVSLRTGYKW
FT                   LARFRSEGLDGLLDRSSRPHRSPKACAPEQVEHFAQQRRQRLPLWRIAREAGRSLATVA
FT                   RYMERIGLSRLASLEPPAPVRRYERASPGELLHIDTKRLGRIRGVGHRITGDRAQNRNR
FT                   GIGWDAVHLAIDDFSRVSFARILDDEGGDQCAEFLRQATAYYASLGVRIDRVMTDNGSG
FT                   YVSRTFRAVCVELGIRHIRTRPYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQ
FT                   PFIDRYNWCRPHSALGHQPPITRIPDVNNLLRIDS"
FT   repeat_region   288635..288663
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS1002 element"
FT   repeat_region   complement(288635..289675)
FT                   /note="IS1002 insertion sequence"
FT   misc_feature    complement(288668..289204)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain, score
FT                   6.8e-30"
FT   repeat_region   complement(289647..289675)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS1002 element"
FT   CDS             290043..290411
FT                   /transl_table=11
FT                   /gene="panD"
FT                   /locus_tag="BPP1899"
FT                   /product="aspartate 1-decarboxylase precursor"
FT                   /EC_number="4.1.1.11"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1816"
FT                   /db_xref="GOA:Q7W972"
FT                   /db_xref="HSSP:1PYU"
FT                   /db_xref="InterPro:IPR003190"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7W972"
FT                   /protein_id="CAE37199.1"
FT                   /translation="MQRIMLRAKLHRVTVTEADLHYEGSCGIDEDLLDAAGMREFERIE
FT                   LYNVTNGERFDTYIIKAARGSGAISLNGAAARRAQVGDLLIICTYGPMSEEQSATHKPQ
FT                   VVLVDDANRVKEIRKFPA"
FT   misc_feature    290043..290390
FT                   /note="HMMPfam hit to PF02261, Aspartate decarboxylase,
FT                   score 2.4e-77"
FT   CDS             290418..291515
FT                   /transl_table=11
FT                   /gene="ascD"
FT                   /gene_synonym="rfbI"
FT                   /locus_tag="BPP1900"
FT                   /product="CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehy
FT                   drase reductase"
FT                   /EC_number="1.17.1.-"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1817"
FT                   /db_xref="GOA:Q7W971"
FT                   /db_xref="HSSP:1CZP"
FT                   /db_xref="InterPro:IPR001221"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W971"
FT                   /protein_id="CAE37200.1"
FT                   /translation="MRARPARAPRSLPIRIAMSFQVTIEPSKHQFQAEAGQTVLDAALA
FT                   AGIVLPYSCRTGACSTCKGKVVAGEVDAGPYPAQILSPEDLAQGYTLFCQAKPQSDLVV
FT                   ESTEVRLASDIQIRKLPSRVQTIERVAPDVAVLKLQLPASEQFRYYAGQYIEVILKDGK
FT                   RRSYSMAGAPHTGSPLELHIRHMPGGLFTDHVFGAGDTQMKEREILRLEGPFGSFFLRE
FT                   DSDKPIVLLASGTGFAPVKAIVEHMIHNQIQRPAVLYWGGRRPRDLYHDALAQSWAGSL
FT                   PGFRYVPVVSDALDEDGWSGRTGYVHEAVMQDLSDLSGYEVYACGTPLMVDAARREFSA
FT                   QCGLPAEAFYADAFTSEADLAKATP"
FT   misc_feature    290481..290717
FT                   /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster
FT                   binding domain, score 1.4e-14"
FT   misc_feature    290577..290603
FT                   /note="PS00197 2Fe-2S ferredoxins, iron-sulfur binding
FT                   region signature."
FT   misc_feature    290778..291077
FT                   /note="HMMPfam hit to PF00970, Oxidoreductase FAD-binding
FT                   domain, score 8.3e-19"
FT   misc_feature    291090..291428
FT                   /note="HMMPfam hit to PF00175, Oxidoreductase NAD-binding
FT                   domain, score 5e-34"
FT   CDS             291711..292967
FT                   /transl_table=11
FT                   /gene="dadA"
FT                   /gene_synonym="dadR"
FT                   /locus_tag="BPP1901"
FT                   /product="D-amino acid dehydrogenase small subunit"
FT                   /EC_number="1.4.99.1"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1818"
FT                   /db_xref="GOA:Q7W970"
FT                   /db_xref="InterPro:IPR006076"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W970"
FT                   /protein_id="CAE37201.1"
FT                   /translation="MKVAVLGSGIIGVSSAWWLSQAGHDVVVVDRCTGAAQETSLANGA
FT                   QISVSYAEPWANPQAPFKLLKWMFQDDAPLLFRPQLDWRQWQWGLAFLRECLPSRLAPN
FT                   IRAMVRMAEYSRATLQGMRAELGIQYDHLERGILNFYRDQREFETSQRAAGLMRDFGVE
FT                   RRVINADEVVAIEPALAPHRQTIVGGDYTPEDESGDVHLFAAALARRCEAAGVEFRFST
FT                   RVTRLLGEGGRVQGVELIEPDGRYGRLDADAFVVAMGSFSAQLVRPLGVPCMVYPAKGY
FT                   SATFPVRPGALAPVVSLTDSSHKVVFSRLGERLRMAGTAELSGYSRGLNTGRCEAMTRL
FT                   ARELFPDALDFERVSYWSGLRPSTPSNVPLIGRTSVSNLYLNTGHGTLGWTMGVGSGRA
FT                   LADLLSGRRPEPEFPFLGL"
FT   misc_feature    291711..292937
FT                   /note="HMMPfam hit to PF01266, FAD dependent
FT                   oxidoreductase, score 0.0046"
FT   CDS             292972..294309
FT                   /transl_table=11
FT                   /gene="ugpB"
FT                   /locus_tag="BPP1902"
FT                   /product="glycerol-3-phosphate-binding periplasmic protein
FT                   precursor"
FT                   /note="ortholog of Bordetella pertussis (BX470248) BP1819"
FT                   /db_xref="GOA:Q7W969"
FT                   /db_xref="InterPro:IPR006059"
FT                   /db_xref="UniProtKB/TrEMBL:Q7W969"
FT                   /protein_id="CAE37202.1"
FT                   /translation="MKKLQMTGFARAMRASRRACVLGLAMAAMGVAQAADSVEIQVWHT
FT                   LSGPNKAEFEKLAKQFNKEQGDVVVKLRDFGNQDDLKKEAVSAVKSKKGPNLVQLADNH
FT                   SPEVVAEHKSILPLHQLLAKYPVKDLNWFLPSTTSFTRDGKGRLLAFPWMAEVPVMFYN
FT                   TAYYKKAGLDPNKPARTWADLQAELLKLRDVANIDCPYATSDQVTVHLENLAPVNNQLY
FT                   ATLNNGLDVAKKGS