 |
|
EBI DbfetchID BX640427; SV 1; linear; genomic DNA; STD; PRO; 348997 BP. XX AC BX640427; XX DT 09-AUG-2003 (Rel. 76, Created) DT 23-OCT-2008 (Rel. 97, Last updated, Version 6) XX DE Bordetella parapertussis strain 12822, complete genome; segment 5/14 XX KW complete genome. XX OS Bordetella parapertussis OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Bordetella. XX RN [2] RP 1-348997 RA Sebaihia M.; RT ; RL Submitted (06-AUG-2003) to the EMBL/GenBank/DDBJ databases. RL Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute, RL Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail: RL ms5@sanger.ac.uk XX RN [3] RA Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E., RA Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., RA Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A., RA Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I., RA Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., RA Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., RA Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., RA Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., RA Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., RA Barrell B.G., Maskell D.J.; RT "Comparative analysis of the genome sequences of Bordetella pertussis, RT Bordetella parapertussis and Bordetella bronchiseptica"; RL Nat. Genet. 35(1):0-0(2003). XX DR EMBL-CON; BX470249. DR RFAM; RF00005; tRNA. XX FH Key Location/Qualifiers FH FT source 1..348997 FT /organism="Bordetella parapertussis" FT /strain="12822" FT /mol_type="genomic DNA" FT /db_xref="taxon:519" FT CDS 80..703 FT /transl_table=11 FT /locus_tag="BPP1292" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2598" FT /db_xref="InterPro:IPR007396" FT /db_xref="UniProtKB/TrEMBL:Q7WAS6" FT /protein_id="CAE36594.1" FT /translation="MYLPAHFAETRPEELARIIRAHPLGMLVTQDAQGLDADHLPFEFD FT PDAGPHGTLIAHVARANTLWQRCPDGAAVMVVFRGAEGYISPNWYPSKHEAHRQVPTWN FT YEVVHAHGTLAVRDDERFVRGVVARLTRRHEAGESRPWKMTDSTPEYIDSMLRNIVGIE FT VAITSLVGKRKLSQNKDERDRLGAVQALQARGQDALAQSMARAE" FT CDS 734..1345 FT /transl_table=11 FT /locus_tag="BPP1293" FT /product="putative membrane transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2597" FT /db_xref="GOA:Q7WAS5" FT /db_xref="InterPro:IPR001123" FT /db_xref="UniProtKB/TrEMBL:Q7WAS5" FT /protein_id="CAE36595.1" FT /translation="MSLLAFLLAAALLAITPGPGIAYVVARTVAGGRAEGLASCLGTAL FT GGLVHVLAAALGLSVLIAESALAFSLLKYAGAAYLVYLGLRMWLSPRPAAVRVVAPQGA FT RRALAEGVLVEALNVKTALFFLAFLPQFVDPGAPLAPQLALLGGICVTLNTLVDVMAVV FT AAHRLLRSEAARVARARVLTRVSGTTMVGLGVFLALARRD" FT misc_feature 734..799 FT /note="Signal peptide predicted for BPP1293 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.905 between residues 22 and 23" FT misc_feature join(743..811,848..916,944..1003,1064..1132,1160..1228, FT 1274..1333) FT /note="6 probable transmembrane helices predicted for FT BPP1293 by TMHMM2.0 at aa 4-26, 39-61, 71-90, 111-133, FT 143-165 and 181-200" FT misc_feature 929..1240 FT /note="HMMPfam hit to PF01810, LysE type translocator, FT score 2.5e-07" FT CDS 1381..1851 FT /transl_table=11 FT /locus_tag="BPP1294" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2596" FT /db_xref="InterPro:IPR014922" FT /db_xref="UniProtKB/TrEMBL:Q7WAS4" FT /protein_id="CAE36596.1" FT /translation="MADKRTEGSGKGGAKAAGKGGLGEVVLLSGGNPQIAKGYGDAPVQ FT AYIAAMPGWKRAVGERLDAIVERTVPGVYKAVKWNSPFYGFEGEGWFLSFHCMTKYIKV FT AFFRGASLQPLPPGASKQKDVRYLDIYEDAPFDEARFADWVAQASRLPGERM" FT CDS 2062..3330 FT /transl_table=11 FT /locus_tag="BPP1295" FT /product="putative peptidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2595" FT /db_xref="GOA:Q7WAS3" FT /db_xref="InterPro:IPR011650" FT /db_xref="UniProtKB/TrEMBL:Q7WAS3" FT /protein_id="CAE36597.1" FT /translation="MREAMSKQAMLDAIEAEREVLIGFLQEFVRAASPNPPGDTRAAAA FT VIQGFLSARGVPNELLGPQESMPNVVSECEGGRAGPRLVYNGHMDVFPVGDGHGWTRDP FT WSGDIEEGRLHGRGTCDMKTGTAASVIAYAYLYARRAQLAGSVALTAVSDEETGGRWGT FT RWLLENDTRWRGDCVLNGEPSSLDTIRFSEKGTLRLKFEVLAAGAHGAYVHRSESPTRI FT AAALIGRLAEVEAIEPSLPAALKAHLQREDVRRALDVAMGEGAADVVTRTTLNVGVLNG FT GLKINMIPDRCVFEVDIRLPVGTEPDVVLARLEGILAEFPQASMEVQQWHSTPPNVCAH FT DHPMVDFIADNAQAIVGRRPVAVPSIGSTDCRYWRRSGVPAYVYGPAPGRMAMSNESVD FT LDEFIAVAKVHAAAGWDYLNGAA" FT misc_feature 2134..3165 FT /note="HMMPfam hit to PF01546, Peptidase family FT M20/M25/M40, score 1.4e-48" FT CDS 3367..4881 FT /transl_table=11 FT /locus_tag="BPP1296" FT /product="ABC transport protein, solute binding component" FT /note="ortholog of Bordetella pertussis (BX470248) BP2594" FT /db_xref="GOA:Q7WAS2" FT /db_xref="HSSP:1B52" FT /db_xref="InterPro:IPR000914" FT /db_xref="UniProtKB/TrEMBL:Q7WAS2" FT /protein_id="CAE36598.1" FT /translation="MMSKTGKMAAALAALCLSVGLAGAARAESTLQVALFTSLNSLDPN FT VTTLGEEYVFNGLVFGGLTRIDANSKVVPDLAVSWTPSADLREWTFKLRPGVKFHHGKP FT LTASDVVFSFQRIVDPATGSPGRTQLEVMKSVDAPDDATVHFTLTQPYADFPGLLTGRQ FT LRVVAQDRIDTIKTQPSGTGPFRFVRYTPGDQLELERNPDYYDKDRIKIDRVVMRVMPE FT AAARVAALRSGSIDMIWNLPLETIPDLKKDAAVVVDSVPSASWDGIVLNNSKPPFNDVR FT VRRAVFLALDKKELVNFALFGEGSPTHSPIAPTDPAFNKDIGFAPDLAQAKQLLAEAGY FT AKGFAVDIFVPAGRPSRERLGVAAQQLLRPLGIKLNVQRVPYNRYSAGVAGIAPMYVDG FT FFASPVIDAATSPWFYSTGSWNARMWHFSSKRVDQALDAARASTDRAEQIRHYQDFQRA FT LTEEVPGVIGYVTNVATAYRADIKNYHTNPFLWLDLYDVEKTGGAR" FT misc_feature 3367..3447 FT /note="Signal peptide predicted for BPP1296 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.916 between residues 27 and 28" FT misc_feature 3388..4863 FT /note="HMMPfam hit to PF00496, Bacterial extracellular FT solute-binding proteins, family 5, score 1.3e-72" FT misc_feature 4795..4845 FT /note="PS00179 Aminoacyl-transfer RNA synthetases class-II FT signature 1." FT CDS 4885..5844 FT /transl_table=11 FT /locus_tag="BPP1297" FT /product="ABC transport protein inner membrane component" FT /note="ortholog of Bordetella pertussis (BX470248) BP2593" FT /db_xref="GOA:Q7WAS1" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7WAS1" FT /protein_id="CAE36599.1" FT /translation="MWAYLVRRLGHVVFVVAAMAVLIFLITQAMPGNVAYTIAGHFASP FT EQVAAIEARLGLNDPLWTQFWRWAGAALHGDMGQSLVMGRPVGPLISAALGRSALLAVA FT ALVLTAALGIFLGVVAAVRHGRWQDRLILAFSWLSISLPQFLIAIVLVLLVAGTLGWLP FT ATGYVELSAGFGAWLSHLVMPVCTLVLGLVAHVTSLQRSSMLETLSAPYVRAARAKGLR FT ERTVLYRHALRNALIPTVTVLALDFGILMGGIVVVETVFSYPGLGRLLIFAVEQKDLPV FT LQAGVLAVTVIYALANLAADIAYAILDPRIRYGNLDTH" FT misc_feature 4885..4971 FT /note="Signal peptide predicted for BPP1297 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.903) with cleavage site FT probability 0.836 between residues 29 and 30" FT misc_feature join(4909..4977,5182..5250,5287..5355,5398..5466, FT 5587..5655,5737..5805) FT /note="6 probable transmembrane helices predicted for FT BPP1297 by TMHMM2.0 at aa 9-31, 100-122, 135-157, 172-194, FT 235-257 and 285-307" FT misc_feature 5494..5727 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 2.9e-06" FT misc_feature 5497..5583 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS join(5873..6364,6363..6674) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1298" FT /product="ABC transport protein inner membrane component FT (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP2592" FT /db_xref="PSEUDO:CAE36600.1" FT misc_feature 5873..5929 FT /note="Signal peptide predicted for BPP1298 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.927) with cleavage site FT probability 0.886 between residues 19 and 20" FT misc_feature join(5876..5944,6077..6145,6164..6232,6260..6313, FT 6434..6502,6560..6628) FT /note="6 probable transmembrane helices predicted for FT BPP1298 by TMHMM2.0 at aa 2-24, 69-91, 98-120, 130-147, FT 188-210 and 230-252" FT misc_feature join(6317..6364,6363..6545) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 0.0062" FT variation 6356..6363 FT /note="(CG)4 in parapertusis; (CG)5 in pertussis" FT CDS 6676..8310 FT /transl_table=11 FT /locus_tag="BPP1299" FT /product="ABC transport protein, ATP-binding component" FT /note="ortholog of Bordetella pertussis (BX470248) BP2591" FT /db_xref="GOA:Q7WAS0" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WAS0" FT /protein_id="CAE36601.1" FT /translation="MHQDTILNIKGLEVRYGRNQVLHGVDLELPRGASLGIVGESGSGK FT STIAWTVLGLLPPGAAVTAGSVAFDGEDITGERAAGLRGDRIAMVFQDPFTALNPSLPV FT GRQITEALVERGRADARSARAEALRLMDEVRLPRASTLLDAYPHQLSGGMKQRIVIATA FT LACSPDLLLLDEPTTALDVTVEARILDLLDELRVQRGLSMVFISHNIGLVERMCSRVTV FT MHGGRVQEAGAAQQVLWHPAHAYTRKLLAALPLLEKRAPAVPAVGAPIARVRDVRLTFR FT PAHPLGGWARLLRLPRAEGVAALAGVSLELRPREVVGLVGESGSGKSTLGRCLVGLQAP FT DAGTVELSDHDVYRASPEVARRLRRQSQMVFQNPDSSLNPRQRVGEVLRRLLQLMGLDR FT RQQDRRMDELLDLVRLPAAYAERYPHQLSGGEKQRVGIARTLALEPSVLVCDEATSALD FT VSVQASILELLKDLRDRLGVAMLFISHDLAVVSQISDRVVVMRHGAIVEQGRTDQVLSA FT PAHEYTRLLLDSVPAFVARRAREAAVA" FT misc_feature 6769..7353 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.9e-57" FT misc_feature 6790..6813 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 7123..7167 FT /note="PS00211 ABC transporters family signature." FT misc_feature 7615..8184 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 4.2e-62" FT misc_feature 7636..7659 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 7954..7998 FT /note="PS00211 ABC transporters family signature." FT CDS 8394..9455 FT /transl_table=11 FT /locus_tag="BPP1300" FT /product="putative LacI-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2590" FT /db_xref="GOA:Q7WAR9" FT /db_xref="HSSP:1CJG" FT /db_xref="InterPro:IPR001761" FT /db_xref="UniProtKB/TrEMBL:Q7WAR9" FT /protein_id="CAE36602.1" FT /translation="MTTKATGNRKVVKIVDVAKAANVSPAVVSRILSNDSKLVVREETR FT ARVQQAIEALGYTPNLQARGLRLSRSNTLAMIVPELNSPVFPVIIQGAQRAAWERGYSL FT LVGGMGGEEEDPKVAGRLLRSNRIDGLLVTTGRHEAQMLQELATLNAPFVLVNRYLDDQ FT HPYVELDERGAAAAITRHFIELGHRRIAFLGGLQRRVGERRVAGYADALAEAGLPWVPQ FT LVVDAGYYKPGGEDGLRQLLALDEPPTAVVATNEIVAAGAMAAAHRQGVRIPRDLSIAS FT FSDGIVAELLSPALTAVRFPLERMGYLATAMLVDIVEGRGAPQAGLCLPHESVVVRDST FT ARPPGRKARAATR" FT misc_feature 8421..8504 FT /note="HMMPfam hit to PF00356, Bacterial regulatory FT proteins, lacI family, score 2.1e-05" FT misc_feature 8604..9404 FT /note="HMMPfam hit to PF00532, Periplasmic binding proteins FT and sugar binding domain of the LacI family, score 6.7e-23" FT CDS 9927..10451 FT /transl_table=11 FT /locus_tag="BPP1301" FT /product="putative DNA-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2589" FT /db_xref="GOA:Q7WAR8" FT /db_xref="UniProtKB/TrEMBL:Q7WAR8" FT /protein_id="CAE36603.1" FT /translation="MEYLFTLKYQLADADSDLDPLVERLGQAGCDDALVGMGLPGRLAL FT EFTREADSAEAAVRSALADVRRAMPTAALIEAAPDLVGLTDVAQIVGVSRQNMRKLMLA FT HPATFPAPIHEGSASLWHLADVLGWLQARGGYPLAQATLDVARMALKVNVAKEARRLPR FT SAGAGLDALVG" FT CDS complement(10460..10918) FT /transl_table=11 FT /locus_tag="BPP1302" FT /product="putative regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2588" FT /db_xref="GOA:Q7WAR7" FT /db_xref="HSSP:1Q06" FT /db_xref="InterPro:IPR015358" FT /db_xref="UniProtKB/TrEMBL:Q7WAR7" FT /protein_id="CAE36604.1" FT /translation="MDIAEVARRTGVPASTLRYYDKVGLIAPVSPPGARRRYAPAVLEQ FT LALVALGQAGGLSLDDIRAMLSPQGAPRVDRQVLLAKAEEIDATVKQLQAMSRGLRHAA FT ACPAPSHAQCPTFRRLLKAAAAGALSRRRPASTGVAPRSPRKRAPARP" FT misc_feature complement(10805..10909) FT /note="HMMPfam hit to PF00376, Bacterial regulatory FT proteins, merR family, score 1.5e-07" FT CDS 11002..11496 FT /transl_table=11 FT /locus_tag="BPP1303" FT /product="putative membrane protein" FT /note="Similar to Brucella melitensis hypothetical membrane FT spanning protein Bmeii0616 SWALL:Q8YCB6 (EMBL:AE009697) FT (162 aa) fasta scores: E(): 8.1e-18, 39.1% id in 156 aa, FT and to Rhizobium loti hypothetical protein Mll7507 FT SWALL:Q985V9 (EMBL:AP003012) (167 aa) fasta scores: E(): FT 1.7e-17, 39.49% id in 157 aa" FT /db_xref="UniProtKB/TrEMBL:Q7WAR6" FT /protein_id="CAE36605.1" FT /translation="MAPQEMLARVVLVGMGATAVMDVWTMALRRLGVPVLDYALAGRWA FT GHWRHGRFAHADIRQAPAVRGEAALGWGLHYATGVLFAGLLVGVAGQAWLRAPSPGPAL FT AVGVATVLLPWFVMQPALGAGLASSRTPTPLRNCLRSVLVHAVFGLGLYLAGLALAWIG FT R" FT misc_feature join(11020..11085,11206..11274,11311..11379,11422..11490) FT /note="4 probable transmembrane helices predicted for FT BPP1303 by TMHMM2.0 at aa 7-28, 69-91, 104-126 and 141-163" FT CDS complement(11537..12691) FT /transl_table=11 FT /locus_tag="BPP1304" FT /product="conserved hypothetical protein" FT /note="Similar to Thermoplasma volcanium L-carnitine FT dehydratase Tv1186 or Tvg1215416 SWALL:Q979H5 FT (EMBL:AP000995) (399 aa) fasta scores: E(): 1.6e-53, 39.08% FT id in 371 aa, and to Rhizobium meliloti putative conserved FT membrane-anchored protein Rb0848 or Smb21182 SWALL:Q92V66 FT (EMBL:AL603645) (394 aa) fasta scores: E(): 3.5e-50, 37.83% FT id in 378 aa" FT /db_xref="GOA:Q7WAR5" FT /db_xref="HSSP:1PQY" FT /db_xref="InterPro:IPR003673" FT /db_xref="UniProtKB/TrEMBL:Q7WAR5" FT /protein_id="CAE36606.1" FT /translation="MTGALQGLRVLDMGQWIAAPYCTAMLADFGAEVIKIEKPGGGDDQ FT RHSSPFVDGQSAFFNLFNRNKHSVTIDLSTPAGRAQCRDLIGSADVLVENYRPGVMARL FT GLDYATLHAEFPRLVYCSISGFGQSGPMRGEGGFDLVIQAMSGLAAQCGPTDGPAHRLP FT IPIVDVSTALFATIGVLTALAARQQTGTGQLVDVALLDSALAMAPLEVADYLATGHNPE FT RMGQASRNAAPYQIFRTQDGAIALGAASQGLWEKTCDLLDRPALKNDPRFADNTARLAH FT RAVLAELVEQALATQPSEHWLARLREAGIPAGPVLSYADILRHPQVAAREMVRRPETAG FT AATAATLASPIRLSDTPARFVSGAPALGAHNGLLASGTRTGPPA" FT misc_feature complement(11921..12487) FT /note="HMMPfam hit to PF02515, CAIB/BAIF family, score FT 1.5e-60" FT CDS complement(12688..13554) FT /transl_table=11 FT /locus_tag="BPP1305" FT /product="putative (R)-specific enoyl-CoA hydratase" FT /note="Similar to Pseudomonas aeruginosa (R)-specific FT enoyl-CoA hydratase Phaj2 or Pa1018 SWALL:Q9LBK1 FT (EMBL:AB040026) (288 aa) fasta scores: E(): 2.7e-41, 43.55% FT id in 287 aa, and to Mycobacterium tuberculosis FT hypothetical 30.2 kDa protein Ufaa2 or Rv3538 or Mt3642 or FT Mtcy03c7.18C SWALL:P71863 (EMBL:Z82098) (286 aa) fasta FT scores: E(): 8.9e-30, 38.94% id in 285 aa" FT /db_xref="GOA:Q7WAR4" FT /db_xref="InterPro:IPR002539" FT /db_xref="UniProtKB/TrEMBL:Q7WAR4" FT /protein_id="CAE36607.1" FT /translation="MNVQALLAHEFPVETQSYGARDCSLYALSAGYGQDPMDERQLQYV FT YGDAPKTAGGMALVLANPGFWQRQPWTGIDWARCVLGEQRIATHRPLPAAGRIASQLRV FT TRITDKGRQFGAMLHAERTLHDADNGTHYATLSMVTICRGDGGFGGPPDDSTRLPAVPA FT RAPDIQTEQPTLPQQALLFDLHGIVNPVHSWPAAARQAGYPRPFLHGVCLMGLVQHAIA FT RELAAYDTDGIATLSARFRGVFYPGETLLLSLWRDGDQVRYEAHAKERSTLAVEGSARL FT QPAGAVQ" FT misc_feature complement(12721..13086) FT /note="HMMPfam hit to PF01575, MaoC like domain, score FT 1.5e-11" FT CDS complement(13568..14536) FT /transl_table=11 FT /locus_tag="BPP1306" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) FT fasta scores: E(): 2.4e-48, 44.89% id in 323 aa, and to FT Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 9.3e-39, 38.31% FT id in 321 aa" FT /db_xref="GOA:Q7WAR3" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7WAR3" FT /protein_id="CAE36608.1" FT /translation="MFCRKLALALGMAVSALSAGAAAAPYPAEPVRLVVPYAPGGTTDL FT LARLIASKLSAKYERQVVVENKTGAGGNIAAGFLARSRPDGYTLMMASIGQFAINPLIF FT SAPGYDAAKDFQPVIQVTRVPNVLVVNAASKLDSLQDLIKLAQAQPSVTYASSGNGSSN FT HLAGALLAHMANIDMLHIPYKGSAPGLQALYGGDVQVMFDNLSSALPHVQGGKLRALGV FT SSETRFSKLPDVPTIAESGLPGYEASAWFGLVAPAGTPAAIVEQLNRDVAAVLADNDVR FT SKLLEMGMTPQGGSVAQFQAVIDADIQKWKPIVQSLNLAVN" FT misc_feature complement(13580..14401) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 3.6e-109" FT misc_feature complement(14468..14536) FT /note="Signal peptide predicted for BPP1306 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.848 between residues 23 and 24" FT CDS complement(14562..15305) FT /transl_table=11 FT /locus_tag="BPP1307" FT /product="probable GntR-family transcriptional regulator" FT /note="Similar to Deinococcus radiodurans transcriptional FT regulator, GntR family Dra0211 SWALL:Q9RYU6 (EMBL:AE001863) FT (279 aa) fasta scores: E(): 3e-12, 32.91% id in 237 aa, and FT to Ralstonia solanacearum putative DNA-binding FT transcriptional regulator Rsp0079 or Rs05542 SWALL:Q8XTM7 FT (EMBL:AL646076) (273 aa) fasta scores: E(): 5.5e-11, 30.9% FT id in 220 aa" FT /db_xref="GOA:Q7WAR2" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WAR2" FT /protein_id="CAE36609.1" FT /translation="MATVKDDLLASGSNKRYVNLAHLLRMRIRAGDYRPGDRLPAIDQL FT ARQFNTAVVTARQALALLERNGLVQRRQGVGTFVLDDAVAPVGLELPLDQDWSGIRALW FT GASQVRILAERDRVECPADYAQHGQPADAYFYMRRVHEAQGIPYTVADIYIDREVYRKA FT PKRFRHEIALHVLPQLLPQRKLEAFEMIQVDAADVELAKWLDIAVGAPVVIMKRVVRDE FT SGRIIYAGTPVYRGDIVRLDRTFKL" FT misc_feature complement(15069..15248) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 1.7e-18" FT CDS complement(15487..16476) FT /transl_table=11 FT /locus_tag="BPP1308" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) FT fasta scores: E(): 1.5e-43, 42.03% id in 314 aa, and to FT Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 9.3e-40, 39.51% FT id in 329 aa" FT /db_xref="GOA:Q7WAR1" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7WAR1" FT /protein_id="CAE36610.1" FT /translation="MQPRLTALHSALAALALCLPAGQAHAQADAAYPARPITLIVPFSA FT GGGSDVVARILATGLGSQLKQTVIVENRTGAAGNIGAEAVARARPDGYTLLFGSMGVMS FT VNSHLYRNMPLQPERDLAPVGRIYDTPHVIVVGQQSTLKSLPQLIEQAKARPDALTYAS FT AGNGTSTHLVGALFMHETGTRLMHVPYKGNAPALNDTMAGHVDMMFDQATNSTGQIQAA FT RLRALAATSHARIPDLPDVPTVAELGYPELEVTSWTVLAAPKATPAAAMATLSTALKKT FT LADPAIKEKIRQTGGVINYQDLPSTTEFVNRETARWGALIQSAGITAN" FT misc_feature complement(15499..16323) FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1e-114" FT misc_feature complement(16399..16476) FT /note="Signal peptide predicted for BPP1308 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.995 between residues 26 and 27" FT CDS complement(16512..17582) FT /transl_table=11 FT /locus_tag="BPP1309" FT /product="putative malate/L-lactate dehydrogenase" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT oxidoreductase Pa1252 SWALL:YC52_PSEAE (SWALL:Q9I492) (334 FT aa) fasta scores: E(): 3.1e-38, 39.03% id in 333 aa, and to FT Agrobacterium tumefaciens malate dehydrogenase Mdh or FT Atu0164 or Agr_c_268 SWALL:AAL41188 (EMBL:AE008990) (346 FT aa) fasta scores: E(): 3.4e-37, 36.73% id in 343 aa" FT /db_xref="GOA:Q7WAR0" FT /db_xref="InterPro:IPR003767" FT /db_xref="UniProtKB/TrEMBL:Q7WAR0" FT /protein_id="CAE36611.1" FT /translation="MTISPAASHDELAGHLARCADTGAPCRLSADQLAALLARLFERAG FT ASAATAAVLAQTCALAEQDEARSHGLHRVAGYVATLGTDWVDGHAEPAVIDASGATIIV FT DARNGFAQCALRAARPLIEERVRQHGLAVLLTRNSHHFGALWLDVEPYARQQWIALTAV FT NSISHMAPHGGTTPLYGTNPMAFACPRAGADPLVFDQASSVMAKGDVQLAAQHGHTLPP FT DAGVDRHGQPTRDPAAVLDGGALLPFGGHKGSAIAMMVEVLAAALTGGSFSWEVDRSAH FT PTAQTSRTGQFFLCIDPARSAGHGFAARIDQLAQALLRSGQQRLPGERRYAARRLAAQH FT GIAIDPAALLALLRLA" FT misc_feature complement(16518..17507) FT /note="HMMPfam hit to PF02615, Malate/L-lactate FT dehydrogenase, score 7.9e-51" FT CDS complement(17594..18784) FT /transl_table=11 FT /locus_tag="BPP1310" FT /product="putative FAD dependent oxidoreductase" FT /note="Similar to Ralstonia solanacearum hypothetical FT transmembrane protein Rsp1590 or Rs02147 SWALL:Q8XPP8 FT (EMBL:AL646085) (398 aa) fasta scores: E(): 6.5e-50, 37.72% FT id in 387 aa, and to Rhizobium loti hypothetical protein FT Mll4416 SWALL:Q98E45 (EMBL:AP003004) (388 aa) fasta scores: FT E(): 2e-42, 34.52% id in 391 aa" FT /db_xref="GOA:Q7WAQ9" FT /db_xref="InterPro:IPR006076" FT /db_xref="UniProtKB/TrEMBL:Q7WAQ9" FT /protein_id="CAE36612.1" FT /translation="MQAMNQPQVQQYDIVIIGGGIIGSSVAYHVLARDPAARVCVVEPD FT PSYEFASALRSSGGCRVQFTCPENIAMSLYSLDVIKNFENTMAANGRPAPVDWVQGGYL FT FLVPPERVAMLERNVARQQAMGCQVDLLTPAELKARFPSIHVDDLGAGAHTPQDGWCDP FT NGLLWGFRRKAVELGAVYLKDRVVAADVTPARARRVTLESGAQLDAEAFVNAAGAWSGQ FT VAELFGMHLPVVPMRRFEHYFTCGNPIEPLPYVKDLSRLAFRSEGRGFSGGLVNGDENR FT GFNFDVDHDYFENVVWPAVAHHFPPLEAAKCHRTWSGLYEQNELDGNPVIGAWNVRLKN FT LYTVAGFSGHGMMHAPAAGRGIAELLVHGAFQSLDLSKLGYERVQASQPYREEGIL" FT misc_feature complement(17672..18751) FT /note="HMMPfam hit to PF01266, FAD dependent FT oxidoreductase, score 0.0055" FT CDS 18896..19690 FT /transl_table=11 FT /gene="proC" FT /locus_tag="BPP1311" FT /product="pyrroline-5-carboxylate reductase" FT /EC_number="1.5.1.2" FT /note="Similar to Pseudomonas aeruginosa FT pyrroline-5-carboxylate reductase ProC or Pa0393 FT SWALL:PROC_PSEAE (SWALL:P22008) (272 aa) fasta scores: E(): FT 1.2e-27, 45.45% id in 264 aa, and to Caulobacter crescentus FT pyrroline-5-carboxylate reductase Cc0494 SWALL:Q9AAU9 FT (EMBL:AE005722) (260 aa) fasta scores: E(): 1.2e-23, 43.56% FT id in 264 aa" FT /db_xref="GOA:Q7WAQ8" FT /db_xref="InterPro:IPR000304" FT /db_xref="UniProtKB/TrEMBL:Q7WAQ8" FT /protein_id="CAE36613.1" FT /translation="MRQALFLGYGRMGAALGEAWLRAGLLAGIDAVDPGRDGAGLRARL FT VRGADELPEQAYDLVVLAVKPAMAQQALRPVPPARLARACLVSIMAGVPAGALRQALQP FT PRPVARAMPNTPVMAGQGCTGLYGGDDVAPAQRAAIGRLFEAVGAAFWVDTEDQLHAVT FT ALSGSGPAYYHLFSEALAQAGEQLGLPAALARSLAARTALGAASLQCEEGADFAALRRE FT VTSPHGTTHAAIEVFEQAGALRTLVRDAVRQAQARSRELARP" FT misc_feature 18896..19630 FT /note="HMMPfam hit to PF01089, Delta FT 1-pyrroline-5-carboxylate reductase, score 4.9e-54" FT CDS complement(19706..20359) FT /transl_table=11 FT /locus_tag="BPP1312" FT /product="probable GntR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa1269 SWALL:Q9I475 FT (EMBL:AE004556) (222 aa) fasta scores: E(): 6.3e-24, 41.17% FT id in 204 aa, and to Rhizobium loti transcriptional FT regulator Mlr7144 SWALL:Q986Z8 (EMBL:AP003011) (253 aa) FT fasta scores: E(): 1.9e-18, 37.43% id in 203 aa" FT /db_xref="GOA:Q7WAQ7" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WAQ7" FT /protein_id="CAE36614.1" FT /translation="MTNANAGPLTLTADGVTDELRALILDGSLGIGVQLKQEVLAKRFG FT VSRIPVREALKRLEAEGLVTHAPHQGSVVASRSVQELLETLDIRVGLESRALVLAIPHM FT TPAVFKEAETIIARYDASEFPREWSELNLEFHMCLYRPSGRPRLLKTIENLVRGIDIHL FT RAHQSYAVGRKSPQNEHRAILDACIAGKAKRARDLLEAHIEHTQDVLRKEHGLI" FT misc_feature complement(20138..20314) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 2.7e-12" FT CDS 20580..21056 FT /transl_table=11 FT /locus_tag="BPP1313" FT /product="putative phage-related protein" FT /note="Similar to Bacteriophage T4 hypothetical 17.1 kDa FT protein in gp30-riiI intergenic region Y12g or 30.3 FT SWALL:Y12G_BPT4 (SWALL:P32276) (152 aa) fasta scores: E(): FT 6.3e-07, 32.66% id in 150 aa, and to Bacteriophage RB69 FT Gp30.3 30.3 SWALL:CAD28421 (EMBL:AJ439452) (137 aa) fasta FT scores: E(): 5.1e-06, 33.62% id in 113 aa" FT /db_xref="InterPro:IPR012596" FT /db_xref="UniProtKB/TrEMBL:Q7WAQ6" FT /protein_id="CAE36615.1" FT /translation="MNSASRLNISSTSDDWRGLALSNFPLSPFVLDGELFASVEGFIQG FT IKFREDDPRRATAFLSSGWDAKHLGDTVDRSGAYWGGARIRYGSAEHHQLIERAIRARI FT KQCEGLRRTLRATEGMTLVHDTGKPEAPHTSLPATVFCRILETLRREILARARP" FT CDS complement(join(21066..21608,21607..22533)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1314" FT /product="probable outer membrane efflux protein FT (Pseudogene)" FT /note="Similar to Pseudomonas putida TrpC SWALL:AAL95702 FT (EMBL:AF360362) (484 aa) fasta scores: E(): 8.5e-47, 40.2% FT id in 490 aa, and to Pseudomonas aeruginosa probable outer FT membrane protein Pa2837 SWALL:Q9I006 (EMBL:AE004710) (479 FT aa) fasta scores: E(): 7e-54, 42.85% id in 490 aa" FT /db_xref="PSEUDO:CAE36616.1" FT misc_feature complement(join(21074..21608,21607..21618)) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein, score 4.1e-25" FT misc_feature complement(21673..22323) FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein, score 2.7e-22" FT misc_feature complement(22468..22533) FT /note="Signal peptide predicted for BPP1314 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.629 between residues 22 and 23" FT misc_feature complement(22486..22518) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(join(22548..22733,22736..23650)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1315" FT /product="putative membrane protein (Pseudogene)" FT /note="Similar to Salmonella typhi putative inner membrane FT protein Sty0850 SWALL:Q8Z881 (EMBL:AL627268) (368 aa) fasta FT scores: E(): 1.2e-51, 42.12% id in 368 aa, and to FT Escherichia coli hypothetical protein YbhR or B0792 or FT Z1012 or Ecs0870 SWALL:YBHR_ECOLI (SWALL:P75774) (368 aa) FT fasta scores: E(): 1e-51, 41.03% id in 368 aa" FT /db_xref="PSEUDO:CAE36617.1" FT misc_feature complement(join(22568..22633,22739..22804,22826..22891, FT 22937..23002,23066..23131)) FT /note="5 probable transmembrane helices predicted for FT BPP1315 by TMHMM2.0 at aa 180-202, 223-245, 260-282, FT 289-311 and 346-368" FT CDS complement(23678..24817) FT /transl_table=11 FT /locus_tag="BPP1316" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti putative ABC FT transporter permease protein Rb0871 or Smb21205 FT SWALL:Q92V46 (EMBL:AL603645) (384 aa) fasta scores: E(): FT 3.7e-57, 45.23% id in 367 aa, and to uncultured bacterium FT pCosFS1 ElsD SWALL:Q9APR7 (EMBL:AF250767) (384 aa) fasta FT scores: E(): 2.4e-50, 40.1% id in 374 aa" FT /db_xref="GOA:Q7WAQ5" FT /db_xref="InterPro:IPR013525" FT /db_xref="UniProtKB/TrEMBL:Q7WAQ5" FT /protein_id="CAE36618.1" FT /translation="MSPRAGAGGFWPRLASLVRKEFRQLLRDRSNLAIGLVLPILLILI FT FGYGLSLDLRNAPIAVVLEDRSPQARDALAGLAGSDYLAPVWLADMHSAETLMRRHEVE FT GIVRVPADFARRLAAGDAQVQLLLHGADANSAAALARYVDGALGHAARLRADRAGHAAP FT PPGVTMVERLWFNAANTSTWYLVPGLIALIMTLVGAFLTALVVAREWERGTLEALFVTP FT VRPTEILLAKMIPYFVVGMLELGLCLAAARLLFHVPLQGSLAVLLLSAMLYLVVALGIG FT LLISATTRNQFLASQVAVLSSFLPALMLSGFLFDLRNVPAAIRFVGSLLPATYFMELVK FT TAFLAGDNWPLIARNCAILAVYAVALLALARRLTRKSLD" FT misc_feature complement(join(23708..23764,23876..23941,23963..24028, FT 24068..24133,24197..24262,24662..24727)) FT /note="6 probable transmembrane helices predicted for FT BPP1316 by TMHMM2.0 at aa 30-52, 185-207, 228-250, 263-285, FT 292-314 and 351-370" FT CDS complement(join(24814..25401,25403..26563)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1317" FT /product="probable ABC transporter ATP-binding protein FT (Pseudogene)" FT /note="Similar to Salmonella typhi hypothetical ABC FT transporter ATP-binding protein YbhF or Sty0852 FT SWALL:Q8Z880 (EMBL:AL627268) (578 aa) fasta scores: E(): FT 1.3e-74, 47.33% id in 581 aa, and to Rhizobium meliloti FT putative ABC transporter ATP-binding protein, consisting of FT 2 fused ATP-binding domains Rb0872 or Smb21206 SWALL:Q92V45 FT (EMBL:AL603645) (582 aa) fasta scores: E(): 4.6e-69, 49.65% FT id in 584 aa" FT /db_xref="PSEUDO:CAE36619.1" FT misc_feature complement(join(24943..25401,25403..25474)) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.1e-48" FT misc_feature complement(25430..25453) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(25925..26470) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 2.5e-57" FT misc_feature complement(26108..26152) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(26426..26449) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(26560..27573) FT /transl_table=11 FT /locus_tag="BPP1318" FT /product="putative HlyD-family secretion protein" FT /note="Similar to Thiobacillus ferrooxidans hypothetical FT protein in asrC 5'region SWALL:Q9L9D4 (EMBL:AF173880) (338 FT aa) fasta scores: E(): 2.4e-41, 46.36% id in 330 aa, and to FT Rhizobium meliloti hypothetical membrane protein Rb0873 or FT Smb21207 SWALL:Q92V44 (EMBL:AL603645) (334 aa) fasta FT scores: E(): 2.3e-38, 44.24% id in 339 aa" FT /db_xref="GOA:Q7WAQ4" FT /db_xref="InterPro:IPR018254" FT /db_xref="UniProtKB/TrEMBL:Q7WAQ4" FT /protein_id="CAE36620.1" FT /translation="MKKPLIAAAAAIALAIAGAAWWLTRAQPPDDILTLYGNVDIRQVA FT LAFDNSERIADMQVEEGDRVRAGQVLARQETRTLQLEAERAQARASAQEQALLRLRNGS FT RPQEIAQARARADAATADAALAQQDLQRLQGTARATDGRAVSRQDIDRAAARLRVARAQ FT AETQAKALQLALLGPRDEDIAEAAAQWQASLAELALLRHRLAQAELKAPTDAVVRARLL FT EPGDMASPQRPVYTLALTEPKWVRAYLSEPDLGRVRPGMRARVYTDSQPDRAIDGQVGY FT ISSVAEFTPKTVQTETLRTSLVYEIRIRVDDPQDRLRLGMPATVRLDLADAAEPGA" FT misc_feature complement(26593..27450) FT /note="HMMPfam hit to PF00529, HlyD family secretion FT protein, score 0.00076" FT misc_feature complement(26953..26997) FT /note="PS00579 Ribosomal protein L29 signature." FT misc_feature complement(27502..27558) FT /note="1 probable transmembrane helix predicted for BPP1318 FT by TMHMM2.0 at aa 5-24" FT misc_feature complement(27517..27573) FT /note="Signal peptide predicted for BPP1318 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.669 between residues 19 and 20" FT CDS 27692..28339 FT /transl_table=11 FT /locus_tag="BPP1319" FT /product="putative TetR-family transcriptional regulator" FT /note="Similar to Pseudomonas fluorescens PhlH SWALL:Q9RF00 FT (EMBL:AF207529) (223 aa) fasta scores: E(): 5e-29, 43.75% FT id in 208 aa, and to Rhizobium meliloti putative FT transcriptional regulator, TetR family protein Rb0874 or FT Smb21208 SWALL:Q92V43 (EMBL:AL603645) (225 aa) fasta FT scores: E(): 6.7e-05, 25.11% id in 227 aa" FT /db_xref="GOA:Q7WAQ3" FT /db_xref="InterPro:IPR012287" FT /db_xref="UniProtKB/TrEMBL:Q7WAQ3" FT /protein_id="CAE36621.1" FT /translation="MTRPRRSLRADGASTRARILEAAGQLFGQYGYAGVASKAICAAAG FT ADLAAINYHFGSRDGLYRAVLVEGHKHFINLDTLTALTQSDLSPREKLCAFIDGMVAGL FT WEQDWHTRVCAREVLAPSAHFAALIDEEVLPKFRLVAGILGDITGFAPGDPALARCAVS FT IVAPCMMLMVVDRNAPSPPQQVLAQPAADLAEHLKRFALAGLDAVSAAAPRR" FT misc_feature 27746..27886 FT /note="HMMPfam hit to PF00440, Bacterial regulatory FT proteins, tetR family, score 4.8e-11" FT CDS 28399..30159 FT /transl_table=11 FT /locus_tag="BPP1320" FT /product="hypothetical protein" FT /note="No significant database matches" FT /db_xref="InterPro:IPR000408" FT /db_xref="UniProtKB/TrEMBL:Q7WAQ2" FT /protein_id="CAE36622.1" FT /translation="MAKEAYTVGPVLSFRGVGGARQWRVSALIGVPRTAKAPALRVEGR FT ACAAPVVLHQTARETFLRYDLSCDMQARERKVEFGPRGGPAWHFTVPAKGAAPRLAYVS FT CNGFSDPSGMRKLVRPENAVWADLLCNHDRDLRPADYLLDKEQLWHETRTHDEGLQRFH FT LLLMGGDQIYFDSIWEYIAALKQWVGLARAQQLEFKVSQALEDEIEAYYFGLYSRRWLP FT PSRAPWAGAQPSLDAADAMARVPTIMMWDDHDIFDGWGSYSPAMQRCELFQTLFRHARR FT AFWVFQMQHALADLPPLQAIARANVLPQDPQYEGIAWSRQLKRDRLALPLLDGQPGFTS FT AYRLGPLALVAADLRTERSRTQILGTQAWTALQGWLHGLKGNRPASATGGCRHLIFMSS FT VPVAHLKLSLAEGLLDTFGQDHVLDSNADDLKDHWSHDDHEGERKRLLETLMQVANEKL FT LRVSIASGDVHVAAWGNAYRRDIPPTSNWAQIQQFTSSAVVHPSLLGVAERLFLFMLNG FT TAAQAQPIDVNLSVEMMLFPGHNRYVMPARNWLAFELDAGKAGKLWASWRCETETGFSN FT HLQAVQPAQG" FT misc_feature 29557..29589 FT /note="PS00626 Regulator of chromosome condensation (RCC1) FT signature 2." FT CDS complement(30160..31005) FT /transl_table=11 FT /locus_tag="BPP1321" FT /product="putative aldo/keto reductase-family protein" FT /note="Similar to Rhizobium meliloti putative FT oxidoreductase protein R02112 or Smc01429 SWALL:Q92NR7 FT (EMBL:AL591789) (281 aa) fasta scores: E(): 1.2e-47, 54.21% FT id in 273 aa, and to Agrobacterium tumefaciens aldo/keto FT reductase Atu2032 or Agr_c_3682 SWALL:AAL43024 FT (EMBL:AE009154) (281 aa) fasta scores: E(): 1.5e-45, 51.47% FT id in 272 aa" FT /db_xref="GOA:Q7WAQ1" FT /db_xref="HSSP:1HW6" FT /db_xref="InterPro:IPR020471" FT /db_xref="UniProtKB/TrEMBL:Q7WAQ1" FT /protein_id="CAE36623.1" FT /translation="MKQHRFGATDRIVAAIGQGTWNLDNSARASAVDALRNGLDLGMAH FT IDTAEMYGAGAAERLVGEAIAGRRDQVFLVSKVLPENASRAGTRAACERSLRRLGTDHL FT DCYLLHWRGAHPLEETFAAFDALQREGKIRSYGVSNFDVDDLQEAQDIVGPGKLACNQV FT LYHLRERAIEHAVMPWCAAHGVAVVAYSPFGHDDFPAPASAGGRVLARIAQAHGATPRQ FT IALAFLTRQPGVFAIPKAADPAHVAANAAAGRLALSEQDCADLDAAFERGPRPASLPMI FT " FT misc_feature complement(30190..30984) FT /note="HMMPfam hit to PF00248, Aldo/keto reductase family, FT score 1.2e-64" FT CDS complement(31048..32916) FT /transl_table=11 FT /locus_tag="BPP1322" FT /product="putative sigma-54-dependent transcriptional FT regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2158" FT /db_xref="GOA:Q7WAQ0" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WAQ0" FT /protein_id="CAE36624.1" FT /translation="MPGYQLSASGQHLPSTQAAAPIVRSWERCASATADLHDDPVALRH FT GDLQERLEQHACVLRAAQPEIETLAGMVASASSLVLLADASGVILQASGNTGFLQRADH FT MALRPGVSWAENHRGTNAIGTALIEAAALRVHGAEHFLRRNQILSCHAAPIRSPRGDIL FT GVLDISGDAGRMHAYALSLASMCARQVANRVIEQAGERCLYLVFHKQASLLDSVERGLL FT LIEDERIVGANDAAVALLGATWPALLDQPLDGWLVDWRAVARTPGRVHTPQGAPFHAVL FT RQGGHARSLPAPPRPPRAVPAQAPEETLPALAPALQAGFERARRALDGGLSVLLQGETG FT AGKEVYAQHLYRRSIWRDGPFVAVNCGALPESLIEAELFGYEPGAYTGARRLGARGRLR FT EADGGVLFLDEIGDMPLALQTRLLRALQERMVQPLGADKAVPVNFGLVSATHRDLDAMI FT AAGEFRADLYYRLHDYAVPLPRLRERDDLRPFICAALRALDDTPAGLTLADDALDALAA FT YAWPGNYRQLRSVLRTLALFHPPGSLIHRHHLPAAIAAPAVHAADGAAPRPGVAAPPAA FT PASLRDASLHRIDQALARHGGNIAGAAHELGIHRSTLYRHLARQRG" FT misc_feature complement(31057..31179) FT /note="HMMPfam hit to PF02954, Bacterial regulatory FT protein, Fis family, score 3.5e-10" FT misc_feature complement(31333..31992) FT /note="HMMPfam hit to PF00158, Sigma-54 interaction domain, FT score 5.1e-86" FT misc_feature complement(31879..31920) FT /note="PS00675 Sigma-54 interaction domain ATP-binding FT region A signature." FT CDS 33111..34703 FT /transl_table=11 FT /gene="acoD" FT /locus_tag="BPP1323" FT /product="aldehyde dehydrogenase" FT /EC_number="1.2.1.3" FT /note="ortholog of Bordetella pertussis (BX470248) BP2157" FT /db_xref="GOA:Q7WAP9" FT /db_xref="HSSP:1CW3" FT /db_xref="InterPro:IPR016162" FT /db_xref="UniProtKB/TrEMBL:Q7WAP9" FT /protein_id="CAE36625.1" FT /translation="MRPPRDGKQSSRRHNDIRRQTMDLSDLKKLGLDVAYPFKEQYENY FT IGGQWVPPVGAEYFDNLSPITGQPFCRVPRSGAADIELALDAAHRARAAWARTSPAERA FT NILLRIADRIEGQLPMLAVAESIDNGKPLRETTAADLPLAIDHFRYFAGCIRAQEGAIS FT EIDANTVAYHFHEPIGVVGQIIPWNFPLLMAAWKLAPALAAGCVVVLKPAEQTPASILV FT LAELIGDLLPPGVLNVVNGYGKEAGQALATSKRIAKIAFTGSTPVGKHILHAAADNLIP FT ATVELGGKNPNIFFDDVMDHDDEFLDKALEGLAMFALNQGEVCTCPSRILIQESIYERF FT IEKAIARVQSIKTGHPLDAGTMVGAQVSQVQMDKILSYIDIGRQEGAQCLTGGARNDML FT PGGLDQGFYVQPTMLLGKNSMRIFQEEIFGPVAAVATFKDEEEAIAMANDTFYGLGAGV FT WSRDGARAYRVGRGIEAGRVWTNCYHLYPAHAAFGGYKQSGIGRETHKAALSNYQQTKC FT LLVSYSAKALGFF" FT misc_feature 33255..34676 FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family, score 1.8e-227" FT misc_feature 33960..33983 FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site." FT misc_feature 34059..34094 FT /note="PS00070 Aldehyde dehydrogenases cysteine active FT site." FT CDS complement(34907..35557) FT /transl_table=11 FT /locus_tag="BPP1324" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2156" FT /db_xref="GOA:Q7WAP8" FT /db_xref="InterPro:IPR003680" FT /db_xref="UniProtKB/TrEMBL:Q7WAP8" FT /protein_id="CAE36626.1" FT /translation="MDSSQVPNPVLVLVGSPRRDGNSALLAQAVAEGARQSGAVATLLF FT LDDYIAGFLTDEKEADARRPDDRYGELFFDHFLPARAVVLCTPVYWYGMSAQAKAFFDR FT SFTYYSASHPRHAEVLRRMTGKRLALAVSSEETYPGAALGIVHQLQEFTRYTHSQFVGM FT VHGAGNRRGEVAHDPRRPLQAAHRLGHGLLSLPYSDYRIDSPRDHQVWPGAPA" FT CDS join(35689..36219,36218..36595) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1325" FT /product="putative LysR-family transcriptional regulator FT (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP2154" FT /db_xref="PSEUDO:CAE36627.1" FT misc_feature 35707..35886 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1e-21" FT misc_feature 35749..35841 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature join(35950..36219,36218..36556) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 1.2e-25" FT CDS 36592..37887 FT /transl_table=11 FT /locus_tag="BPP1326" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2153" FT /db_xref="InterPro:IPR007383" FT /db_xref="UniProtKB/TrEMBL:Q7WAP7" FT /protein_id="CAE36628.1" FT /translation="MSAPADPRLAQLRRMQRWALALLAAMIAGFVASHLMGGQGAWAWV FT RAFCEAATVGALADWFAVVALFRRPLGLPIPHTAIIPANKARIGDNLAVFVRDHFLDPA FT TLLEKLRVFDPAARLGHWLADPRQTRSLGQGARQVALQALDLLDEQAVSRAIQGFAVAQ FT LRRWDAARTAGEVLALLTRDGRHQELLDAALRRLGDYLGEEDIRQRACALLVKFARKEW FT PRIIAAVDVIGSVEGIADNLADRMARALVDELRDVLSRPDHPVRRNYEAWVADYIARLR FT DDPELAGQVEALKQRLIDDPRVQEYALGLWRDIHAVLRRDLQAEDSALARHLEDALQAL FT GQRLSRDPELRRAVNEHVLDSARKLTDSLRSGVTEHISRTVKNWDERHLVRELELSVGR FT DLQYIRFNGTLVGGLIGLALHAGVLLVQRAGG" FT misc_feature 36592..36720 FT /note="Signal peptide predicted for BPP1326 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.964) with cleavage site FT probability 0.379 between residues 43 and 44" FT misc_feature 36649..36717 FT /note="1 probable transmembrane helix predicted for BPP1326 FT by TMHMM2.0 at aa 20-42" FT CDS complement(37909..38793) FT /transl_table=11 FT /locus_tag="BPP1327" FT /product="putative lysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2152" FT /db_xref="GOA:Q7WAP6" FT /db_xref="HSSP:1IXC" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WAP6" FT /protein_id="CAE36629.1" FT /translation="MSRNIDTALLRAFLAVHDTGSLTAAAALLHLTQGAVSQQLQRLEA FT LFGRTLLERRRSGAALTGDGARLLGRAREMVRINDELMQHMTGADCVGAVRLGVPHDLI FT GTHLPGLLRAYSLRYPDVDISLISATSPELLEQVRRRKLDLTLAEEPIGAAAGGERLAV FT DRVVWLAAPGGQAWRKNPLPVSLVSDACAFRPVLADALDGGRIPWRSVFENGNADATLT FT TVRLDLAVTASLLSVAPADLQVLDAASGLPALPDYAINLYIAPGERSQAVEEMAHHIRQ FT AYQERRPAYAAAA" FT misc_feature complement(37942..38532) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 9.7e-20" FT misc_feature complement(38596..38775) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 2.2e-16" FT misc_feature complement(38641..38733) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(38716..38793) FT /note="Signal peptide predicted for BPP1327 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.880) with cleavage site FT probability 0.495 between residues 26 and 27" FT CDS 38892..39767 FT /transl_table=11 FT /locus_tag="BPP1328" FT /product="putative oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2151" FT /db_xref="GOA:Q7WAP5" FT /db_xref="InterPro:IPR003719" FT /db_xref="UniProtKB/TrEMBL:Q7WAP5" FT /protein_id="CAE36630.1" FT /translation="MQTTTSLIASVRRIAAFSDGARGGNPAGVHVAEVLPDAMTMQQMA FT AEIGYSETVFAAPAYGGWRVRYFAPEAEVPFCGHATIALGAVLAEQEGDGVFALTTNHA FT NITVEGRRQGGLYSAALQSPRTRSAPLEAAVRDEALALFGYTPADLDSRLPPAYAEAGA FT AHLILPLNSRERLAAMRYDLAAGRAFMKRTGVVTIAWVHAESATLLHARNAFAAGGVYE FT DPATGAAAAALAGHLRDSGWLRAGAIEILQGFDMGVPARLRAEYGPEPGSSVRVAGTAR FT ALARQPALID" FT misc_feature 38913..39758 FT /note="HMMPfam hit to PF02567, Phenazine biosynthesis-like FT protein, score 2.7e-41" FT CDS complement(39757..40113) FT /transl_table=11 FT /locus_tag="BPP1329" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2150" FT /db_xref="InterPro:IPR009874" FT /db_xref="UniProtKB/TrEMBL:Q7WAP4" FT /protein_id="CAE36631.1" FT /translation="MDQYVDGFLLSVPNDKLDTYRQMATKAGAIWKEHGALAYCECTGD FT DLDIEGMVSFKTSAAAREGETVVFAWIVYPNRAERDRINAAVMADPRLKEQCVEGVFDF FT KRMAYGGFKTLVNL" FT CDS join(40187..40402,40406..41218) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1330" FT /product="putative AraC-family transcriptional regulator FT (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP2149" FT /db_xref="PSEUDO:CAE36632.1" FT misc_feature join(40259..40402,40406..40798) FT /note="HMMPfam hit to PF01965, ThiJ/PfpI family, score FT 0.0088" FT variation 40403..40405 FT /note="In-frame TAG stop codon in parapertussis; CAG in FT pertussis" FT misc_feature 40919..41056 FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family, score 1.8e-05" FT misc_feature 41075..41206 FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family, score 0.00026" FT CDS complement(41389..41568) FT /transl_table=11 FT /locus_tag="BPP1331" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2148" FT /db_xref="UniProtKB/TrEMBL:Q7WAP3" FT /protein_id="CAE36633.1" FT /translation="MPAKSKAQQMAAGAALAAKRGESRVSDLKGASRDMYDSMSERELE FT HMAGTARKGKPYHK" FT CDS 41666..42190 FT /transl_table=11 FT /locus_tag="BPP1332" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2147" FT /db_xref="InterPro:IPR005180" FT /db_xref="UniProtKB/TrEMBL:Q7WAP2" FT /protein_id="CAE36634.1" FT /translation="MQCPAFPGRFLRSSRMQISRHFPRLARRAALALCLAGAAQVHAQE FT AAVQRKSDYPFAATVARLQDALRAKGMTIFAVIDHQAAAKQAGLDMPPTQVVVYGNPKA FT GTPLMLAAPDFALELPLKVLVRETASGEVLVVYHPAGTREGMLGLPAGMAQQLAGAERI FT VDAAVRRAPAD" FT misc_feature 41666..41794 FT /note="Signal peptide predicted for BPP1332 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 43 and 44" FT misc_feature 41804..42169 FT /note="HMMPfam hit to PF03625, Domain of unknown function FT DUF302, score 7.1e-26" FT CDS complement(42201..43037) FT /transl_table=11 FT /locus_tag="BPP1333" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2146" FT /db_xref="InterPro:IPR000073" FT /db_xref="UniProtKB/TrEMBL:Q7WAP1" FT /protein_id="CAE36635.1" FT /translation="MTPPARSSAAVPAQYADVHYADRPMRIEYALLAPERRDAPLLVFL FT HEGLGSLAMWRDWPRRVCDAAGCRGLVYSRYGYGRSTVRPLDESRPIDYLHQQAAQALP FT ALFAALGIDARRDKPVLFGHSDGASIALLYAALCPDAVAGIAVAAPHIYVEDITVANIA FT VALRAYRETTLRDRLARYHDDVDSTFASWTDTWLDPAFRQWNIEAYLPAITCPMLAMQG FT VDDEYGTLEQIRGIRRLAPQTRLLEIQDCGHSPHKDQPELVTRALAGFVGALPRPA" FT misc_feature complement(42225..42836) FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold, FT score 4.1e-09" FT CDS 43150..43521 FT /transl_table=11 FT /locus_tag="BPP1334" FT /product="putative ArsR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2145" FT /db_xref="GOA:Q7WAP0" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WAP0" FT /protein_id="CAE36636.1" FT /translation="MVEYQAPALDRVFHALSDPTRRAMLRRLADGEHNIRALAAPFAMS FT FTAASKHLKVLESAGLVSRRVQGRSHLCRIDAAPLAAIDEWLKFYERFWHTRLDMLETL FT LRADAASSVPSHPDQDPTP" FT misc_feature 43186..43419 FT /note="HMMPfam hit to PF01022, Bacterial regulatory FT protein, arsR family, score 2.1e-13" FT CDS 43518..44069 FT /transl_table=11 FT /locus_tag="BPP1335" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2144" FT /db_xref="GOA:Q7WAN9" FT /db_xref="InterPro:IPR013538" FT /db_xref="PDB:2K5G" FT /db_xref="UniProtKB/TrEMBL:Q7WAN9" FT /protein_id="CAE36637.1" FT /translation="MTSPSSAFPDGHGARLDAQSIRFERLLPGPIERVWAWLADADKRA FT RWLAGGELPRQPGQTFELHFNHAALTAETAPARYAQYDRPIVARHTLLRCEPPRVLALT FT WGGGAGEAPSEVLFELSEAGEQVRLVLTHTRLADRAAMLDVAGGWHAHLAVLAGKLAGQ FT APPPFWTTLAQAEQDYEQRL" FT CDS complement(44085..45776) FT /transl_table=11 FT /locus_tag="BPP1336" FT /product="putative sulfate transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP2143" FT /db_xref="GOA:Q7WAN8" FT /db_xref="InterPro:IPR011547" FT /db_xref="UniProtKB/TrEMBL:Q7WAN8" FT /protein_id="CAE36638.1" FT /translation="MPHSVACLDLRVIALLEAKRAGLLRRAHWLPNIVSGLIVGVVALP FT LAMAFAIASGAKPEQGLYTAIVAGLLVSLCGGSRVQIAGPTGAFIVILAGITAQHGVAG FT LQLATLMAGCILLALGAARLGAIIKYIPAPVIVGFTAGIGVIIWVGQWKDFFGLPSPAG FT THFHEKLWQLVHSLPQLHLATTALAALSLALLLLNNRLPYLRRVPGPLVALVVATTLQA FT VLGLDGVATIGSAFGGIPQGLPSWQWPEITVSRVIELIGPAFAIAMLGAIESLLSAVVA FT DGMAGTRHDSNQELVGQGLANIVAPLFGGFAATGAIARTATSIRNGGTSPLAGVVHCIT FT LLLMVLLLAPLAENVPLAALAAILFVVAWNMSDAPHFVRMIKRAPRADVAILLVTFVLT FT VFADLVVAVNIGVVIAILHFLRRMASSVQVQAQSPAELGDELGHRGYGPLPDDVLVYAV FT EGPLFFGAAENFERALAATHTDPRTLIIRLRWVPFIDITGLQALEEVITDLQRRGVRVI FT LSGANPRVKAKLHRAGLVGLAGADNVFDRFEDAVLSCRAPAAPATA" FT misc_feature complement(44127..44459) FT /note="HMMPfam hit to PF01740, STAS domain, score 2.2e-20" FT misc_feature complement(44508..45422) FT /note="HMMPfam hit to PF00916, Sulfate transporter family, FT score 4.5e-88" FT misc_feature complement(join(44538..44603,44643..44708,44721..44786, FT 44823..44888,44934..44999,45186..45236,45330..45395, FT 45417..45482,45528..45593,45615..45680)) FT /note="10 probable transmembrane helices predicted for FT BPP1336 by TMHMM2.0 at aa 32-54, 61-83, 98-120, 127-149, FT 180-197, 259-281, 296-318, 330-352, 356-378 and 391-413" FT CDS complement(45825..46505) FT /transl_table=11 FT /locus_tag="BPP1337" FT /product="putative gntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2142" FT /db_xref="GOA:Q7WAN7" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WAN7" FT /protein_id="CAE36639.1" FT /translation="MRSSTDLSAEGISQAIATAIVSHRLPPGTRLREEALASVYKVSRT FT KIRAALLMLSKDKLIQIVPDKGAFVSKPDAHEAREVYAVRRILEAALAREFVACAAPQD FT YERLEQHLHQEREAIHEGDVQRRNQLLAGFHLQLAEIVGNSVLTAMLHELLARTAVITV FT MYQSAHDASCSSQEHYAFLAAARDGDAERACALMDEHLLHLQTALDFDGAPAPNRDLVA FT ALLS" FT misc_feature complement(46296..46472) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 4.7e-08" FT CDS complement(46754..47212) FT /transl_table=11 FT /locus_tag="BPP1338" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2141" FT /db_xref="UniProtKB/TrEMBL:Q7WAN6" FT /protein_id="CAE36640.1" FT /translation="MHTRARHATSPLPAMPTSLPARAYALPLILPLLLAACSDAVQTQY FT RDLDEARAAGAIQRGWLPAWLPARTGAIAEAHDLDTNRRAARFVLPDGARIEPPGCAPA FT SGRLPPPALALPGWPASLHQDGAAGRYRLYRCADGYAAFDASHGYLWN" FT misc_feature complement(47144..47212) FT /note="Signal peptide predicted for BPP1338 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.976) with cleavage site FT probability 0.707 between residues 23 and 24" FT CDS 47382..48311 FT /transl_table=11 FT /locus_tag="BPP1339" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2140" FT /db_xref="GOA:Q7WAN5" FT /db_xref="InterPro:IPR003689" FT /db_xref="UniProtKB/TrEMBL:Q7WAN5" FT /protein_id="CAE36641.1" FT /translation="MNQPSSLAADLRGAWHAQAQSHPLITLGLAASAAGVVLLLVAGIV FT NALTGENRVHVGYAVLGGTAGFAATALGALMALGLRAISARTQDAMLGFAAGMMLAASA FT FSLILPGLDAAGTIVGPGPAAAAVVALGLGLGVLLMLGLDYFTPHEHERTGHQGPEAAR FT VNRVWLFVLTIILHNLPEGMAIGVSFATGDLRIGLPLTSAIAIQDVPEGLAVALALRAV FT GLPIGRAVLVAVASGLMEPLGALVGVGISSGFALAYPISMGLAAGAMIFVVSHEVIPET FT HRNGHETTATVGLMAGFALMMFLDTALG" FT misc_feature join(47442..47510,47553..47621,47655..47723,47751..47819, FT 47880..47948,48057..48125,48144..48203,48246..48305) FT /note="8 probable transmembrane helices predicted for FT BPP1339 by TMHMM2.0 at aa 21-43, 58-80, 92-114, 124-146, FT 167-189, 226-248, 255-274 and 289-308" FT misc_feature 47865..48296 FT /note="HMMPfam hit to PF02535, ZIP Zinc transporter, score FT 2e-29" FT CDS complement(48324..48971) FT /transl_table=11 FT /locus_tag="BPP1340" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2139" FT /db_xref="UniProtKB/TrEMBL:Q7WAN4" FT /protein_id="CAE36642.1" FT /translation="MPFLRAPLRAHRAVREQDMKSRRLQLAGVALMMAAACGQAVAGGG FT HHGHHGYYGGYGHSHGSSSDGWWIAGALALVAAGTYLAVSSQPSYAPAAQYSAGGITYT FT TPGGYAASPYDSTVYDPPSYDPPTAYEDAGYAPAGHGQPAFDDGTVAGYPVAPQGAGIA FT RTATRQPAGEAACRREAMNQSGYDPATPSAWTTGVSVDSYQRALSACLAGRG" FT misc_feature complement(join(48717..48773,48834..48899)) FT /note="2 probable transmembrane helices predicted for FT BPP1340 by TMHMM2.0 at aa 24-46 and 66-85" FT CDS complement(49045..50856) FT /transl_table=11 FT /locus_tag="BPP1341" FT /product="putative ABC-transporter membrane-spanning FT ATP-binding component" FT /note="ortholog of Bordetella pertussis (BX470248) BP2138" FT /db_xref="GOA:Q7WAN3" FT /db_xref="HSSP:1MV5" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WAN3" FT /protein_id="CAE36643.1" FT /translation="MRMLWTYLRPHGGLALLALLLAAASQVLALIDPIIFGRIIDEYAI FT GRAGKTGDQLLAGVLGLLALAVAILSRLAKALQEYVTRLVVQKLGTQIFNDGLRQVMRL FT RFQEFEELRSGETLSLLQKVRSDSERFINAFINTAFAAGVGVAFLCWYSVTRHWLLVPV FT FFVGVLLLGGLTGLLSRQIRSQQRSIMRETNRNSGFITESLRNIELIKSLGLTYPEIRR FT LQAQTQQIFALEMQKVKRIRLLSFLQGMILSVLKLSVLFALLWLILRDVLSTGELIAMQ FT FISVAIFAPLQELGNLILAYREADASLNHYAALMARPVERNPESAQDSGPIQRVRFGEV FT RFRHQGATENALDGVSFEARLGDTVAFVGPSGSGKSTLVKLLVGLYAPDHGEVYYNDVS FT TRDLRFNPTRRQIGFVTQETHLFSGTLRENMQLVKPDVTDEEIVAAMRQASCANVQARS FT PAGLDTTIGEGGVKLSGGERQRLSIARALVRQPRLLIFDEATSALDSLTEEQITQTIRD FT VSRRAGQITILIAHRLSTIMHADTIFVLEKGRVVEQGSHAELLAGKGLYYAMWRQQIGE FT RPAVRAPEPQSEPDTAGGGPEAGVSLL" FT misc_feature complement(49213..49773) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 3.1e-52" FT misc_feature complement(49396..49440) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(49729..49752) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(join(49960..50025,50056..50121,50317..50382, FT 50398..50463,50635..50691,50752..50817)) FT /note="6 probable transmembrane helices predicted for FT BPP1341 by TMHMM2.0 at aa 13-35, 55-74, 131-153, 158-180, FT 245-267 and 277-299" FT misc_feature complement(49984..50814) FT /note="HMMPfam hit to PF00664, ABC transporter FT transmembrane region, score 8.1e-10" FT misc_feature complement(50704..50727) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(50770..50856) FT /note="Signal peptide predicted for BPP1341 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.989 between residues 29 and 30" FT CDS complement(50940..51491) FT /transl_table=11 FT /locus_tag="BPP1342" FT /product="putative acetyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2136" FT /db_xref="GOA:Q7WAN2" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:Q7WAN2" FT /protein_id="CAE36644.1" FT /translation="MPSAPATPSVAVRRAQAPDAALLPAIERSAGQRFLDAPGLAWIAA FT DEVMSEQDHRAWIAAGTSWVAECPGAGLAGFLVAERTADALHVWELAVRREMQGRGIGG FT RLVRAAIDAASAAGLPAITLTTFRDLPWNQPFYARLGFATLQADGLNVRLQAILAREAS FT LGLPAARRCAMRREIAAARR" FT misc_feature complement(51063..51299) FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family, score 6.4e-13" FT CDS 51546..51740 FT /transl_table=11 FT /locus_tag="BPP1343" FT /product="putative membrane protein" FT /note="Similar to Hordeum vulgare low-temperature induced FT protein Lt101.2 SWALL:LT02_HORVU (SWALL:Q9ARD5) (54 aa) FT fasta scores: E(): 0.042, 45.83% id in 48 aa, and to FT Xylella fastidiosa hypothetical protein Xf0135 SWALL:Q9PH11 FT (EMBL:AE003867) (64 aa) fasta scores: E(): 4.6e-15, 65.51% FT id in 58 aa" FT /db_xref="UniProtKB/TrEMBL:Q7WAN1" FT /protein_id="CAE36645.1" FT /translation="MRLLLAIFLPFTVFFTIGRPIAGIICLLLQITLIGWIPAALWAVY FT ALSQFHTDRKIRDAVGGRG" FT misc_feature 51606..51674 FT /note="1 probable transmembrane helix predicted for BPP1343 FT by TMHMM2.0 at aa 21-43" FT CDS complement(51759..52106) FT /transl_table=11 FT /locus_tag="BPP1344" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2134" FT /db_xref="GOA:Q7WAN0" FT /db_xref="InterPro:IPR006913" FT /db_xref="UniProtKB/TrEMBL:Q7WAN0" FT /protein_id="CAE36646.1" FT /translation="MHYHGSCHCGTIRFDVEGELTGAMSCNCSICRRKGALLWFVPRDH FT LRLATPDEQIATYTFNRHLIKHRFCPTCGIHTHGEGVDQQGRAMAAINIRCLDDVDLDA FT VAVHQYDGRAA" FT CDS complement(52135..53574) FT /transl_table=11 FT /locus_tag="BPP1345" FT /product="putative transmembrane efflux protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2133" FT /db_xref="GOA:Q7WAM9" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7WAM9" FT /protein_id="CAE36647.1" FT /translation="MPHTLDERKRWLALMVLCLGVLMIVLDTTIVNVALPSIKADLGFT FT EASLVWVVNAYMLTFGGFLLLGGRLGDLLGQRRMFLAGLTLFTLASLACGMAQGQAMLV FT AARAVQGLGGAVVSAVALSLIMTLFTEPAERARAMGVYGFVCAGGGSIGVLLGGLLTSS FT LSWHWIFLVNLPIGALVYALCLPLLPASQGPTGHPRLDLAGAAAITASLMLAVYAVVNG FT NEAGWTSPQSLGLLALAVALLALFLRIEARVPAPLMPLSLFALRNVATANIVGVLWAAA FT MFAWFFISALYMQLVLGYTAMQVGLGFLPANIIMAAFSLGLSARLVMRFGIRAPLVCGL FT LVAALGLALFARAPVAGSFAVDVLPGMLLLGLGAGIAFNPVLLAAMSDVDPSEAGLASG FT VVNTSFMMGGALGLAVLASLAAGRSASLRAGGADVLTALNGGYHAAFAVGAVFAALAAL FT LAGVLLRRPQPGASAPAADAH" FT misc_feature complement(join(52186..52251,52312..52377,52417..52482, FT 52522..52587,52609..52674,52705..52770,52834..52899, FT 52915..52968,53005..53070,53086..53151,53188..53253, FT 53269..53334,53371..53427,53473..53538)) FT /note="14 probable transmembrane helices predicted for FT BPP1345 by TMHMM2.0 at aa 12-34, 49-68, 80-102, 107-129, FT 141-163, 168-190, 202-220, 225-247, 268-290, 300-322, FT 329-351, 364-386, 399-421 and 441-463" FT misc_feature complement(53476..53574) FT /note="Signal peptide predicted for BPP1345 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.777) with cleavage site FT probability 0.512 between residues 33 and 34" FT CDS complement(53593..54012) FT /transl_table=11 FT /locus_tag="BPP1346" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2132" FT /db_xref="InterPro:IPR004360" FT /db_xref="UniProtKB/TrEMBL:Q7WAM8" FT /protein_id="CAE36648.1" FT /translation="MPQISAYLMFDGDCAEAMRLYERILGGKLDALITYGESPPEMPCE FT PQDRDLIMHARLRLDDQLLMASDSNSQCPYEGKKGFSLSLVYPTVSDAQRIFNALAEGG FT QVTMPLQKTFWAEIFGVLVDRHGTAWMISGGQMNS" FT CDS 54163..54771 FT /transl_table=11 FT /locus_tag="BPP1347" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2131" FT /db_xref="GOA:Q7WAM7" FT /db_xref="InterPro:IPR003111" FT /db_xref="PDB:1ZBO" FT /db_xref="UniProtKB/TrEMBL:Q7WAM7" FT /protein_id="CAE36649.1" FT /translation="MAEIPLFPLSNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVV FT VLEQGTEVRRPDGREVLARAGTMARIDHWEAPMPALLELACTGTGRFRLHACTQGKYGL FT WTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHIMPMAAPFRLDDCGWVA FT DRWAEMLSLPPADKARLLLLPPLDRLREIDAVLAADGHA" FT misc_feature 54169..54756 FT /note="HMMPfam hit to PF02190, ATP-dependent protease La FT (LON) domain, score 0.014" FT CDS 54784..55602 FT /transl_table=11 FT /locus_tag="BPP1348" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2130" FT /db_xref="UniProtKB/TrEMBL:Q7WAM6" FT /protein_id="CAE36650.1" FT /translation="MTGTMTIRIDEELRAYIDPLTPDEYAALEQSLLAEGCRDALVLWG FT DLLVDGHNRHAICSKHGIAFNTVQNTRLQSMDDVRLWMIDNHLGRRSVSDFQRGVLALR FT KKEILESRRQAGAGDAALAGGDGPAPLTRQTLARQARLSSTTLGQIEKIRQQAAPELVR FT AVQSGEISINAAAAVATLPAPQQAAAAAGGRGELRAAARQVREARLPVRRASEAEPAPA FT AEPRVVDDYPAEVARLDRLVAQLAEERDALKKKVVQLTVALAEARAKPGD" FT CDS complement(55554..56528) FT /transl_table=11 FT /locus_tag="BPP1349" FT /product="putative araC-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2129" FT /db_xref="GOA:Q7WAM5" FT /db_xref="InterPro:IPR018060" FT /db_xref="UniProtKB/TrEMBL:Q7WAM5" FT /protein_id="CAE36651.1" FT /translation="MSALPDSPSASPPPRHDELASLIERHTPADGSTATALPGLNFYRS FT SSPTELNVSFYRPSLALLAQGAKRVQLGDDVYEYDTSHYLLTSFDLPVASRVTLATPGT FT PYLCFALDLDPHRIAGLISELGAPPAGQPLRRGLTLARLTEPLLGAVLRLARLLDTPAD FT IPVLAPLIEREIHYRLLSGPMGGRLRHIARAEGTALQIARAIDWLRRHYAQPLRVEHLA FT TTVNMSVSSLHHHFKAVTALSPLQYQKQLRLHEARRLMVAETLDAGAAAHRVGYESASQ FT FSREYSRLYGAPPLRDAARLRGTAPADAQSPGLARASASATVS" FT misc_feature complement(55632..55763) FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family, score 0.71" FT misc_feature complement(55782..55919) FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family, score 2.6e-07" FT misc_feature complement(55797..55931) FT /note="PS00041 Bacterial regulatory proteins, araC family FT signature." FT CDS complement(56557..57618) FT /transl_table=11 FT /locus_tag="BPP1350" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2128" FT /db_xref="GOA:Q7WAM4" FT /db_xref="InterPro:IPR003777" FT /db_xref="UniProtKB/TrEMBL:Q7WAM4" FT /protein_id="CAE36652.1" FT /translation="MRSIAMQAADLYVLQTAQSWLDAGQAAVLLTVARTWGSSPRPPGA FT MMAIRADGAVAGSVSGGCIEDDLIDQIRQRGIAALCPGARPALATYGVDGEQARRFGLP FT CGGTLQLVLEPLGAHSRLADLLARLRAHQTVRRSVRLADGAVTLEPAAADAEPRLDGAG FT FASVLGPRHRLLVVGAGQLSRYLCEMAIALDFDVTVSDPRQEYRAGWQVEGVALTTAMP FT DDMVIAARPDARTAVIALTHDPKLDDLALIDALQTPAFYVGALGSRANHARRVARLREH FT FGLTPAQLARLRGPAGIYIGSRTPPEIALSIMAEIVAGKNGAPLPPAASVAAGKARQPG FT GAGVIQAGLCATL" FT misc_feature complement(56644..57567) FT /note="HMMPfam hit to PF02625, Uncharacterized BCR, FT COG1975, score 2e-22" FT CDS complement(57615..59828) FT /transl_table=11 FT /locus_tag="BPP1351" FT /product="putative exported oxidoreductase subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP2127" FT /db_xref="GOA:Q7WAM3" FT /db_xref="InterPro:IPR008274" FT /db_xref="UniProtKB/TrEMBL:Q7WAM3" FT /protein_id="CAE36653.1" FT /translation="MRIAIQNLSRRRFVQGAGGLLLGLSLPPLARRAMAAGPQAGDGFA FT ANAFVRIGADGRITVLAKHLEKGQGAYTGLATLLAEELDADWRQVRVEGAPADSARYGN FT QALGGLQGTGGSTAMFDSWEPMRRAGATARAMLVQAAAQRWQVPADTIEVAEGVLSHPA FT SGRRAGFGELAEAAARSPVPEDVPLKDPARFRLIGKHRLPRVDSAAKSDGSALYTQDMK FT LPGMLVAVVAHAPRLGAAVARVDDAAARAVPGVRAVVRFGGAALRHAGVAVLATNTWAA FT RAGRDALRIEWDEGLAYRQGSADILARYREAVGRPGSMAARKGDIDAAFAGAAKVIEAE FT YTYPYLAHAAMEPLNCLVRLDDERCEIWNGEQFQTADQRAIAQYLGMPAERITLTQLYA FT GGSFGRRASSHADYLLEAVAIARTARAQGLNAPVKLVWMREDDMRAGYYRPLNLHRARL FT ALGADGALQAVHVRMAGQSILLGTPLADWVRDGVDPVSVEGLSDLAYAVPNLQVELHTP FT TDVPVPVLWYRSVGHTHTAFSAETLIDEAAVAAGQDPVAYRLALLAAHPRHREVLQLAA FT ARAGWREPLAAGAPGTRRGRGVAVHESFRSVVAQVVEVTIAADGALKVDRVVCAVHCGL FT AVNPDVVRAQMEGGIGFALSTALHGAITLKDGAVEQSNFHDYPVLRLAEMPAVEVHIAP FT STQPPTGVGEPGVPPLAPALANAIAQATGQRLRTLPLGTTVKA" FT misc_feature complement(57771..58922) FT /note="HMMPfam hit to PF02738, Aldehyde oxidase and FT xanthine dehydrogenase, molybdopterin binding domain, score FT 6.3e-08" FT misc_feature complement(58938..59195) FT /note="HMMPfam hit to PF01315, Aldehyde oxidase and FT xanthine dehydrogenase, a/b hammerhead domain, score FT 0.0025" FT misc_feature complement(59724..59828) FT /note="Signal peptide predicted for BPP1351 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.980 between residues 35 and 36" FT CDS complement(join(59842..60111,60115..60300)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1352" FT /product="putative oxidoreductase subunit (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP2126" FT /db_xref="PSEUDO:CAE36654.1" FT misc_feature complement(59863..60087) FT /note="HMMPfam hit to PF01799, [2Fe-2S] binding domain, FT score 4.5e-34" FT misc_feature complement(join(60106..60111,60115..60291)) FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain, score 1.7e-08" FT misc_feature complement(60163..60189) FT /note="PS00197 2Fe-2S ferredoxins, iron-sulfur binding FT region signature." FT CDS complement(60458..60802) FT /transl_table=11 FT /locus_tag="BPP1353" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2125A" FT /db_xref="UniProtKB/TrEMBL:Q7WAM2" FT /protein_id="CAE36655.1" FT /translation="MIWKLIPIALLADLTACASGTRTDSSPPASSQTSSSAAPGSATTP FT SGPDCDAQPVQNLVGQKYSDSVGNDALRRSNSGSMRLLKPGQVMTMEYNAHRLNIILEG FT NGSISALRCG" FT misc_feature complement(60710..60802) FT /note="Signal peptide predicted for BPP1353 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.985) with cleavage site FT probability 0.677 between residues 31 and 32" FT CDS 60959..61864 FT /transl_table=11 FT /locus_tag="BPP1354" FT /product="putative lysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2125" FT /db_xref="GOA:Q7WAM1" FT /db_xref="HSSP:1IXC" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WAM1" FT /protein_id="CAE36656.1" FT /translation="MDKFQEVSLFLAVAEARSFAAAGRRLGLSASTVTRAVAALEARLG FT ILLLVRTTRHVRLTDAGEQFAHDCRAVLDSLAQAEEAAAGGRVQPRGELSVTAPALFGE FT LHVMPAIVDYLRQHRRVRLRALLVDRVVRLLDEGVDVAVRIGRLPDSSLTAIHVGDVRR FT IVCAAPDFLARAGVPSHPGMLPRYCTVSVVMEGQMDRWRFVCDGHARDLDVQAQLTVTS FT SQAAVRAAVQGWGLAQVVSYQAAGALREGALQVVLREFEPPPLPVHVVYPEGRKGAAKV FT RSFVEFCVERLRAELAELPA" FT misc_feature 60968..61147 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.6e-18" FT misc_feature 61010..61102 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 61217..61837 FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 8.2e-36" FT CDS 61915..62964 FT /transl_table=11 FT /locus_tag="BPP1355" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2124" FT /db_xref="GOA:Q7WAM0" FT /db_xref="InterPro:IPR011576" FT /db_xref="UniProtKB/TrEMBL:Q7WAM0" FT /protein_id="CAE36657.1" FT /translation="MRRRRAGRAAGIMAVVRYDIPGALMSDSLVFHTDLPGLADGPWHG FT GELAMQERAGARERMAQLGPRVIRDYMPQQHRDFFAQLPFMLLATVDAQGDPWASVLEG FT PPGFAHSPDERTLRLDAWPAGDDPARAGLAHGAGVGMLGIELSTRRRNRVNGHVAALDG FT QGFCVVVTQSFGNCPQYIQTRHARQAAPAPQPARWLAGLDAAARTLVGQADTLFVASYA FT RQAGPHAVDVSHRGGPPGFVHLRGDTLTMPDFSGNRFFNTLGNLLANPRAGLVFVDFAR FT GDLLQLCGRAEVLAEAGAPAAYPGAQRLWRVHVERAVRRPAALGLRAGFGEYAAQLAAV FT GQWAGEPPA" FT CDS complement(62972..64090) FT /transl_table=11 FT /gene="aroG" FT /locus_tag="BPP1356" FT /product="phospho-2-dehydro-3-deoxyheptonate aldolase, FT Phe-sensitive" FT /EC_number="2.5.1.54" FT /note="ortholog of Bordetella pertussis (BX470248) BP2123" FT /db_xref="GOA:Q7WAL9" FT /db_xref="HSSP:1OAB" FT /db_xref="InterPro:IPR006219" FT /db_xref="UniProtKB/TrEMBL:Q7WAL9" FT /protein_id="CAE36658.1" FT /translation="MTRIDDPLHDREAGQADATQDTTRIDDVRIGAVRPLISPALLQDE FT LPVSAPLQALVEDSRARIADVLHGRDDRLVVVVGPCSIHDHEQAMEYARQLKEATDTLA FT DDLLIVMRVYFEKPRTTVGWKGYINDPRLDGSFRINEGLRRARHLLLEIGALGLPIATE FT FLDLLSPQYIADLIAWGAIGARTTESPSHRQLASGLSCPLGFKNGTDGGIQVAADAIVA FT ASAPHAFMGMTKMGTAAIFETRGNDDTHVILRGGKQGPNYDAAAIDACCAALAKAGLRE FT QVMVDCSHANSNKSHARQVDVARDLARQLAGGDRRIIGIMIESNLEEGRQDLKPGVPLK FT RGVSITDACLSWAQTEPVLAELAQAVRQRREG" FT misc_feature complement(62990..63970) FT /note="HMMPfam hit to PF00793, DAHP synthetase I family, FT score 3.8e-149" FT CDS complement(64212..64856) FT /transl_table=11 FT /locus_tag="BPP1357" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2122" FT /db_xref="GOA:Q7WAL8" FT /db_xref="InterPro:IPR001123" FT /db_xref="UniProtKB/TrEMBL:Q7WAL8" FT /protein_id="CAE36659.1" FT /translation="MRAAMPEPTQLLAFALICLGMTLTPGPNMMYLVSRSLSQGYRAGL FT VSLAGVALGLVFYVLCAVLGITALLMAVPLAYEALCVAGAIYLMYMAWQALRPGGQSPF FT QVRALAPSPPRRLFAMGLFTALLNPKIAVLYLSLLPQFIDPQQGSVLTQSLALGFTQVG FT ISICVNALFTVMAGAIAVFLARRPMWMVAQRWLMGSVLAGLAVRMALDARR" FT misc_feature complement(64299..64637) FT /note="HMMPfam hit to PF01810, LysE type translocator, FT score 8.5e-08" FT misc_feature complement(join(64305..64370,64440..64505,64581..64646, FT 64659..64724,64761..64826)) FT /note="5 probable transmembrane helices predicted for FT BPP1357 by TMHMM2.0 at aa 10-32, 44-66, 70-92, 117-139 and FT 162-184" FT CDS complement(65058..66410) FT /transl_table=11 FT /gene="gor" FT /locus_tag="BPP1358" FT /product="glutathione reductase" FT /EC_number="1.8.1.7" FT /note="ortholog of Bordetella pertussis (BX470248) BP2120" FT /db_xref="GOA:Q7WAL7" FT /db_xref="HSSP:1GES" FT /db_xref="InterPro:IPR000815" FT /db_xref="UniProtKB/TrEMBL:Q7WAL7" FT /protein_id="CAE36660.1" FT /translation="MAFDFDLYVIGAGSGGVRAARFAAGYGARVAVAESRYLGGTCVNV FT GCVPKKLLVYGAHFHEDFEQAAGFGWNPGRPEFDWPTLIANKNREIERLNGIYRNLLVN FT SGVALHEGHARIVDPHTVEINGQRHSAQHILVATGGWPFVPDIPGKEHAITSNDAFFLP FT ELPRRVLVVGGGYIAVEFASIFNGLGAQTVQVYRRELFLRGFDGSVREHLRDELVKKGL FT DLRFNTDVERIDKRADGVLAVTLSDGSVLETDCVFYATGRRAMLDDLGLENTGVRLAES FT GYIEVDDEYRTSEPSILAIGDVIGRVPLTPVALAEGMAVARRLFRPQEYRKVDYDLIPT FT AVFSLPNIGTVGLTTEQALEHGFRVTRYESRFRPMKLTLTQSQKKTLMKLVVDADSQKV FT LGCHMVGPDAGEIVQGLAVALKAGATKQVFDDTIGIHPTAAEEFVTMRTAT" FT misc_feature complement(65070..65399) FT /note="HMMPfam hit to PF02852, Pyridine FT nucleotide-disulphide oxidoreductase, dimerisation domain, FT score 6.3e-45" FT misc_feature complement(65475..66395) FT /note="HMMPfam hit to PF00070, Pyridine FT nucleotide-disulphide oxidoreductase, score 1.4e-91" FT misc_feature complement(66264..66296) FT /note="PS00076 Pyridine nucleotide-disulphide FT oxidoreductases class-I active site." FT CDS 66585..66881 FT /transl_table=11 FT /locus_tag="BPP1359" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2119" FT /db_xref="UniProtKB/TrEMBL:Q7WAL6" FT /protein_id="CAE36661.1" FT /translation="MQNEDSFFGSLGAMLGAVIRAIVDGLRYVFGGLGRALGDFFGGLA FT SALGMSPSVFNFALLVLGLLLLWTAVRAFMGRAIVAGIFWLVLAMLLLGGLIG" FT misc_feature join(66603..66671,66729..66797,66816..66875) FT /note="3 probable transmembrane helices predicted for FT BPP1359 by TMHMM2.0 at aa 7-29, 49-71 and 78-97" FT CDS 66906..67283 FT /transl_table=11 FT /locus_tag="BPP1360" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3386 SWALL:Q9HYL6 (EMBL:AE004760) (121 aa) fasta FT scores: E(): 3.1e-22, 52.54% id in 118 aa, and to FT Photobacterium profundum hypothetical 14.4 kDa protein FT SWALL:Q93CF8 (EMBL:AF409100) (127 aa) fasta scores: E(): FT 7.1e-18, 45.16% id in 124 aa" FT /db_xref="UniProtKB/TrEMBL:Q7WAL5" FT /protein_id="CAE36662.1" FT /translation="MLYRFLADLVLALHALFVAFAVLGGLLALRWPRLAWLHVPAALWG FT AGIMLAGAVCPLTPLENHWRAQAGQQGYEDGFIAHYLLAAIYPEGLSRTAQTVLGALAL FT AGNALVYAALWRRRRRGGIGR" FT misc_feature 66906..66977 FT /note="Signal peptide predicted for BPP1360 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.658) with cleavage site FT probability 0.338 between residues 24 and 25" FT misc_feature join(66933..66992,67005..67073,67182..67250) FT /note="3 probable transmembrane helices predicted for FT BPP1360 by TMHMM2.0 at aa 10-29, 34-56 and 93-115" FT CDS 67324..68019 FT /transl_table=11 FT /locus_tag="BPP1361" FT /product="probable glutathione S-transferase" FT /note="Similar to Pseudomonas aeruginosa probable FT glutathione S-transferase Pa1033 SWALL:Q9I4U1 FT (EMBL:AE004536) (213 aa) fasta scores: E(): 1.6e-60, 71.42% FT id in 203 aa, and to Anabaena sp. hypothetical protein FT All1124 SWALL:Q8YXT7 (EMBL:AP003584) (232 aa) fasta scores: FT E(): 4.8e-62, 67.25% id in 226 aa" FT /db_xref="GOA:Q7WAL4" FT /db_xref="HSSP:1K0D" FT /db_xref="InterPro:IPR004046" FT /db_xref="UniProtKB/TrEMBL:Q7WAL4" FT /protein_id="CAE36663.1" FT /translation="MIDLYFWATPNGLKIKLFLEEAGLPYTEHPINIGKGEQFQREFLA FT IAPNNRIPAIVDQAPAGGGAPISLFESGAILLYLAEKIGRFIPADVRGRAEVLQWLFWQ FT MGGLGPMAGQNGHFNVYAPEKVPYAIERYTAETARLYDVMDRRLAEREFLAGEYSIADI FT ACYPWVVPHEAHGQKMAHFPHLSRWFEAIAARPATARAYKEAGDSYRPKAPMSDEERAV FT LFGQPGAPR" FT misc_feature 67324..67566 FT /note="HMMPfam hit to PF02798, Glutathione S-transferase, FT N-terminal domain, score 1.5e-10" FT misc_feature 67585..67911 FT /note="HMMPfam hit to PF00043, Glutathione S-transferase, FT C-terminal domain, score 9.1e-10" FT CDS complement(join(68030..69406,69410..69472)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1362" FT /product="putative GntR-family transcriptional regulator FT (Pseudogene)" FT /note="Similar to Ralstonia solanacearum probable FT transcription regulator protein Rsc3119 or Rs00574 FT SWALL:Q8XUR6 (EMBL:AL646073) (488 aa) fasta scores: E(): FT 6.9e-79, 50.92% id in 489 aa, and to Yersinia pestis FT putative GntR-family regulatory protein Ypo2845 FT SWALL:Q8ZCW3 (EMBL:AJ414154) (501 aa) fasta scores: E(): FT 4.9e-57, 39.34% id in 488 aa" FT /db_xref="PSEUDO:CAE36664.1" FT misc_feature complement(69230..69406) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 9.2e-08" FT CDS 69588..70298 FT /transl_table=11 FT /locus_tag="BPP1363" FT /product="putative GNAT-family acetyltransferase" FT /note="Similar to Brucella melitensis FT ribosomal-protein-serine acetyltransferase Bmeii0002 FT SWALL:Q8YE16 (EMBL:AE009639) (242 aa) fasta scores: E(): FT 1.2e-49, 58.9% id in 219 aa, and to Rhizobium loti FT hypothetical protein Mll2986 SWALL:Q98H84 (EMBL:AP003000) FT (228 aa) fasta scores: E(): 4.3e-49, 56.05% id in 223 aa" FT /db_xref="GOA:Q7WAL3" FT /db_xref="HSSP:1NSL" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:Q7WAL3" FT /protein_id="CAE36665.1" FT /translation="MSARVNEFGQPIGQAMPQWQARPRPPRDPAEGRYCRLEPLDAARH FT GDDLYAAFAVPDAASGWTYLSAGPFADRAGYDEYLRKAADSADPLHHAVIDLASGRAIG FT TLSLMRIDPANGVIEVGHVNFAPALRRSPASTEAQYLLMRRAFDELGYRRYEWKCDSLN FT APSRAAALRLGFLFEGIFRQALVYKGRTRDTAWFSIIDSEWPALRAAFERWLAPENFDA FT AGRQRKRLDACRQP" FT misc_feature 69867..70115 FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family, score 0.00034" FT CDS complement(70401..71327) FT /transl_table=11 FT /locus_tag="BPP1364" FT /product="integral membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1411 SWALL:Q9I3T3 (EMBL:AE004570) (303 aa) fasta FT scores: E(): 3.7e-60, 59.67% id in 305 aa, and to Ralstonia FT solanacearum hypothetical transmembrane protein Rsc0519 or FT Rs04969 SWALL:Q8Y218 (EMBL:AL646059) (301 aa) fasta scores: FT E(): 7.5e-54, 55.44% id in 303 aa" FT /db_xref="GOA:Q7WAL2" FT /db_xref="InterPro:IPR000620" FT /db_xref="UniProtKB/TrEMBL:Q7WAL2" FT /protein_id="CAE36666.1" FT /translation="MAAAAPLRRPLDGFATYVMLALCICWGFQQIAIKLVAADVSPTLQ FT IGLRSAFAAVVLIWVVLRHEGLGALRDGTLGPGLAVGALFALEFLLVGVGLEYTTASHM FT AVFLYTAPIFTALGLHLLLPDERLKPLQWLGVAVAFGGIATAFLGKGHAAVPGMLLGDL FT LGVLAGAAWGATTVAIRKSSLSEAAPAKTLFYQMLMAGLALPAFHFASGGAAPVWSGAA FT LASLGFQSVVVALSSYLAWFWLLRRYLATRLAVLSFMTPLFGVTFGVLILDEPLDSGFV FT IGAVLVLAGITLVSGAELLREKLRRRT" FT misc_feature complement(join(70428..70484,70515..70580,70602..70667, FT 70683..70748,70788..70853,70884..70937,70959..71024, FT 71040..71105,71142..71198,71229..71294)) FT /note="10 probable transmembrane helices predicted for FT BPP1364 by TMHMM2.0 at aa 13-35, 45-64, 76-98, 103-125, FT 132-150, 160-182, 195-217, 222-244, 251-273 and 283-302" FT misc_feature complement(70440..70820) FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6, score 2.5e-17" FT misc_feature complement(70884..71258) FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6, score 1.5e-13" FT CDS complement(71330..71665) FT /transl_table=11 FT /locus_tag="BPP1365" FT /product="putative thioredoxin" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1751 SWALL:Q9I2Y6 (EMBL:AE004601) (125 aa) fasta FT scores: E(): 3.1e-21, 53.7% id in 108 aa, and to FT Lactococcus lactis thioredoxin TrxA or Ll1644 SWALL:Q9CF37 FT (EMBL:AE006395) (104 aa) fasta scores: E(): 0.4, 26.82% id FT in 82 aa" FT /db_xref="InterPro:IPR012335" FT /db_xref="UniProtKB/TrEMBL:Q7WAL1" FT /protein_id="CAE36667.1" FT /translation="MDQIELTDGTADRYLLDAPGLSLLVFHSRTCATCGVARQRLPEFD FT LPVDRLCWIDAGENGGLVQRYEVFHLPALFVTRDGAYYGPVSAQLADWDLRQQISLALD FT SYPAELP" FT misc_feature complement(71543..71599) FT /note="PS00194 Thioredoxin family active site." FT CDS complement(71723..72985) FT /transl_table=11 FT /gene="amaB" FT /locus_tag="BPP1366" FT /product="N-carbamoyl-L-amino acid amidohydrolase" FT /EC_number="3.5.1.-" FT /note="Similar to Bacillus stearothermophilus FT N-carbamoyl-L-amino acid amidohydrolase AmaB FT SWALL:AMB2_BACST (SWALL:Q53389) (409 aa) fasta scores: E(): FT 2.8e-50, 40.34% id in 409 aa, and to Arthrobacter aurescens FT L-N-carbamoylase HyuC SWALL:Q9F464 (EMBL:AF146701) (412 aa) FT fasta scores: E(): 4.8e-46, 37.44% id in 414 aa" FT /db_xref="GOA:Q7WAL0" FT /db_xref="InterPro:IPR011650" FT /db_xref="UniProtKB/TrEMBL:Q7WAL0" FT /protein_id="CAE36668.1" FT /translation="MTTTFPPLNAERLWSRVETLSRMTLPDVPWTRRAFSPLFEQSRQW FT LRAEFEAAGLAVRLDAGGNLAGTRPGRDAARRPIATGSHCDTVMAGGRFDGIIGVLAGI FT EVAHTLHEQGVTLEHPFEVIDFLSEEPSDYGISCVGSRALSGQLTPDMLAARNADGETL FT AEGLRRIGGDPDALGAPLRGPGQTAAFVELHIEQGPVLESRGLPIGVVTNIVGIRRVLI FT TVHGQPDHAGTTPMDIRRDALVGAARVIDAAHRRASTQSGKPHYVVATIGRIAMTPNAP FT NAVPGMVELMLEVRSDSDAVLDAFPEAIMAEVADALAALRLSAAMAPVSRAHPTDCAPL FT VMDAVEDAATRLGYASMRLPSGAGHDAVYMAPTGPIGMIFVPCLNGRSHCPEEWLEPSQ FT LLDGTRVLYETVLELDRRLSR" FT CDS complement(73015..74397) FT /transl_table=11 FT /gene="norM" FT /locus_tag="BPP1367" FT /product="multidrug resistance protein" FT /note="Similar to Escherichia coli multidrug resistance FT protein NorM or B1663 SWALL:NORM_ECOLI (SWALL:P37340) (457 FT aa) fasta scores: E(): 7.9e-41, 33.92% id in 451 aa, and to FT Rhizobium loti multidrug efflux protein, NorM Mll4906 FT SWALL:Q98D15 (EMBL:AP003005) (467 aa) fasta scores: E(): FT 3e-101, 59.1% id in 445 aa" FT /db_xref="GOA:Q7WAK9" FT /db_xref="InterPro:IPR002528" FT /db_xref="UniProtKB/Swiss-Prot:Q7WAK9" FT /protein_id="CAE36669.1" FT /translation="MPRSTARAAWKRELAATLALGLPLVLTNLAQMAMTVTDVIFIGRL FT GSQALAASALGANLFTAIEFFGLGLVAATAPMVAHALGRRGNTVRDVRRTVRQGLWTAV FT IYSVPGCLLLWHGEAILLAIDQPPELAAQAGAYLRALMWAMPPFLGFLVLRSFVTALQR FT PRSAFLIALAAIVLNVFGNWVLVFGNLGAPALGLVGAGLASALATLGLFLGMVGVVCLD FT RRFRRYHLFGDVWQPDWQRLAEFWKLGLPIGAATAFEVTIFNAAAFLMGWLGEPELAAH FT AIAIQIASVTFMIPYGIAQAATVRVGHAYGARQPDQVARAGWCAFSLGIGSMAIAAALM FT LLAPGLLVSAFLDIGDPANAQVLRLATAYLAVAALFQIVDGAQVLGAGMLRGLHDTRVP FT MLYAALGYWGVGLPSGAALAFWAGWRGVGVWSGLAIGLALVAVLMMQRWLRRDRVGLLR FT RA" FT misc_feature complement(join(73051..73116,73132..73197,73261..73311, FT 73357..73422,73486..73551,73582..73647,73741..73806, FT 73837..73902,73924..73989,74035..74100,74161..74226, FT 74287..74352)) FT /note="12 probable transmembrane helices predicted for FT BPP1367 by TMHMM2.0 at aa 19-41, 61-83, 103-125, 140-162, FT 169-191, 201-223, 254-276, 286-308, 329-351, 366-383, FT 404-426 and 431-453" FT misc_feature complement(73147..73650) FT /note="HMMPfam hit to PF01554, Uncharacterized membrane FT protein family UPF0013, score 2e-35" FT misc_feature complement(73846..74334) FT /note="HMMPfam hit to PF01554, Uncharacterized membrane FT protein family UPF0013, score 1.2e-26" FT misc_feature complement(74245..74397) FT /note="Signal peptide predicted for BPP1367 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.996) with cleavage site FT probability 0.387 between residues 51 and 52" FT CDS 74585..76441 FT /transl_table=11 FT /gene="pckG" FT /gene_synonym="pck" FT /locus_tag="BPP1368" FT /product="phosphoenolpyruvate carboxykinase [GTP]" FT /EC_number="4.1.1.32" FT /note="Similar to Mycobacterium smegmatis FT phosphoenolpyruvate carboxykinase [GTP] PckG or Pck FT SWALL:PPCK_MYCSM (SWALL:Q9AGJ6) (605 aa) fasta scores: E(): FT 3.7e-152, 59.59% id in 599 aa, and to Ralstonia FT solanacearum probable phosphoenolpyruvate carboxykinase FT protein pckA or Rsc0017 or Rs01839 SWALL:Q8Y3G3 FT (EMBL:AL646057) (622 aa) fasta scores: E(): 1.4e-210, FT 79.67% id in 620 aa" FT /db_xref="GOA:Q7WAK8" FT /db_xref="InterPro:IPR008210" FT /db_xref="UniProtKB/Swiss-Prot:Q7WAK8" FT /protein_id="CAE36670.1" FT /translation="MNKPSEVKPVALNVPDYVKHSGLIAWVERIAALTKPDRVVWCDGS FT QEEYDRLCEQMVQGGTMRRLNPAKRANSYLACSDPSDVARVEDRTFICSEREEDAGPTN FT NWAAPQAMRETLGGLFDGAMRGRTMYVVPFSMGPLGSPIAHIGVELSDSPYVVVNMRIM FT TRMGRKVFDVLGSDGAFVPCVHSVGMPLAEGQQDVAWPCNPTKYIVHYPETREIWSFGS FT GYGGNALLGKKCFALRIASTMGRDEGWLAEHMLILGVTSPKGRKYHVAAAFPSACGKTN FT FAMLIPPHGMDGWKVTTIGDDIAWIKPGPDGRLHAINPEAGYFGVAPGTSEKTNFNAMA FT MLKANVIFTNVALTDDGDVWWEGMTDTPPAHLIDWQGQDWTPAIAAETGRKAAHPNARF FT TAPAAQCPSIDPEWENPKGVAIDAFIFGGRRSTTVPLVTEARNWVEGVYMAATMGSETT FT AAAAGQQGVVRRDPFAMLPFCGYNMSDYFDHWLKLGRRLEETGATLPRIYCVNWFRKGP FT DGKFVWPGFGENMRVLRWMLGRLDGQAGGVDQVFGISPAYGDIDWTGLEFSPDKFEQVI FT SVDLPAWRAELALHDELFTQLAARLPEDLPLTRTAIERRMAA" FT misc_feature 74657..76435 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00821, Phosphoenolpyruvate FT carboxykinase, score 0" FT misc_feature 75401..75427 FT /note="PS00505 Phosphoenolpyruvate carboxykinase (GTP) FT signature." FT CDS 76502..77125 FT /transl_table=11 FT /locus_tag="BPP1369" FT /product="conserved hypothetical protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc1925 SWALL:Q9A701 (EMBL:AE005866) (209 aa) fasta FT scores: E(): 2.3e-10, 34.5% id in 200 aa, and to Vibrio FT cholerae tellurite resistance protein-related protein FT Vc0813 SWALL:Q9KTS5 (EMBL:AE004166) (192 aa) fasta scores: FT E(): 2e-09, 29.38% id in 194 aa" FT /db_xref="GOA:Q7WAK7" FT /db_xref="InterPro:IPR013216" FT /db_xref="UniProtKB/TrEMBL:Q7WAK7" FT /protein_id="CAE36671.1" FT /translation="MTLTSDDLRQIAALTLAHYDDNAVSFEVGTRDHDVSQNIAALLRH FT IQGDPPYAILDFGCGPGRDLKTFAALGHAAVGLDGAAHFVAMAHQATGCEVWQQDFLRL FT ALPAGRFDGIFANASLFHVPTQELPRVLGELRDTLKPGGVLFCSNPRGGNEEGWSRGRY FT GVWHDWESWRALLEAAGFQALEHYYRPAGLPREQQQWLASVWRR" FT CDS 77113..77646 FT /transl_table=11 FT /locus_tag="BPP1370" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein Rsc0991 or Rs04301 SWALL:Q8Y0Q2 (EMBL:AL646062) FT (166 aa) fasta scores: E(): 2.3e-21, 48.14% id in 162 aa, FT and to Caulobacter crescentus hypothetical protein Cc2489 FT SWALL:Q9A5G1 (EMBL:AE005918) (191 aa) fasta scores: E(): FT 5.4e-18, 43.45% id in 168 aa" FT /db_xref="InterPro:IPR005122" FT /db_xref="UniProtKB/TrEMBL:Q7WAK6" FT /protein_id="CAE36672.1" FT /translation="MAQVAGFAALARADARVLVLGSMPGVASLRAQQYYGHPRNAFWPI FT AAELFGLDAAQPYAHRVQALQRAGVALWDVLQACERPGSLDAAIVADSVRPNDFQAFFA FT SHPGIACVGLNGAAAATLYRRHVLPRLHGLAHLRYVALPSTSPAHAAMDFAAKLRAWRA FT IAPASSDPSACLSP" FT CDS complement(77796..78659) FT /transl_table=11 FT /locus_tag="BPP1371" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Rb0265 or Smb20275 SWALL:Q92WR4 (EMBL:AL603642) (286 aa) FT fasta scores: E(): 3.6e-47, 51.31% id in 267 aa, and to FT Ralstonia solanacearum hypothetical protein Rsc0083 or FT Rs02257 SWALL:Q8Y397 (EMBL:AL646057) (281 aa) fasta scores: FT E(): 9e-35, 54.48% id in 279 aa" FT /db_xref="InterPro:IPR008567" FT /db_xref="UniProtKB/TrEMBL:Q7WAK5" FT /protein_id="CAE36673.1" FT /translation="MSPSLFAAGAQAALADSPLIVTVAPNGAYKTAADHPAVPLTAAAL FT AAEARACLDAGAAMMHMHVRTPEGRHSLDVAAYREALAAVRQAVGEELLVQVTSEAAGV FT YRAAEQMAMVRELRPEAVSMGLREIAVPEMPERELADFLAWVAAERIMAQIILYDAADV FT ARWQALRARGLAPEGAWSVLFVLGRYSAGQVSSPRDLLPFLEVYDGSLPWAVCAFGREE FT NACVATAAAFGGHMRVGFENNLKLSDGATAPGNAALVAQAAQAGRVLGRPIATAAQARE FT IYGRLA" FT misc_feature complement(78615..78659) FT /note="Signal peptide predicted for BPP1371 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.943) with cleavage site FT probability 0.897 between residues 15 and 16" FT CDS complement(78656..79618) FT /transl_table=11 FT /locus_tag="BPP1372" FT /product="probable 3-hydroxybutyryl-CoA dehydrogenase" FT /EC_number="1.1.1.157" FT /note="Similar to Escherichia coli probable FT 3-hydroxybutyryl-CoA dehydrogenase PaaH or B1395 FT SWALL:PAAH_ECOLI (SWALL:P76083) (475 aa) fasta scores: E(): FT 6.4e-20, 35.21% id in 284 aa, and to Mycobacterium FT tuberculosis putative 3-hydroxybutyryl-CoA dehydrogenase FT FadB3 or Rv1715 or Mtv048.02 or Mt1754 SWALL:O53928 FT (EMBL:AL022003) (304 aa) fasta scores: E(): 2.3e-29, 38% id FT in 300 aa" FT /db_xref="GOA:Q7WAK4" FT /db_xref="HSSP:1F17" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7WAK4" FT /protein_id="CAE36674.1" FT /translation="MSSPDSALGRPGASHAVVIGGGTMGADVAVVLARALCRTTVVEPD FT AARAAALPRRAADNLAQAGRAEGAAHIAVVPGLDAVEWDSVGLVIECVPERLDIKQALF FT AELARRAPAHAILASNSSSFPISAIGAGLPTRERMLGLHFFMPAHLVPLVEVVLCEASD FT PACADVLIAFMRRCGMVPVRVAQDLPGFLANRLQHALSREAFDLIDRGIASPEDVDAAV FT RFGFGFRFLAAGPVMQRDHAGIDVHAAAGATMYPTFCNADTPARCLTERAADGRHGMKA FT GTGFYAWTPETIAAERARYDRLLRAGLDLLGAELPEIQP" FT misc_feature complement(78755..79051) FT /note="HMMPfam hit to PF00725, 3-hydroxyacyl-CoA FT dehydrogenase, C-terminal domain, score 1.9e-12" FT misc_feature complement(79055..79591) FT /note="HMMPfam hit to PF02737, 3-hydroxyacyl-CoA FT dehydrogenase, NAD binding domain, score 5.9e-32" FT CDS 79733..80734 FT /transl_table=11 FT /locus_tag="BPP1373" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa1998 SWALL:Q9I2B1 FT (EMBL:AE004626) (306 aa) fasta scores: E(): 3.7e-25, 32.63% FT id in 285 aa, and to Rhizobium loti transcriptional FT regulator Mlr6981 SWALL:Q987N6 (EMBL:AP003010) (299 aa) FT fasta scores: E(): 5.4e-23, 31.97% id in 294 aa" FT /db_xref="GOA:Q7WAK3" FT /db_xref="HSSP:1I69" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WAK3" FT /protein_id="CAE36675.1" FT /translation="MKINLSMRDIETVLVLGRTLNFRQAAAQLHLSQSALSTQVLRIEE FT ALGVRLFDRTTRTVRLTAAGEVFMQQAASLQVAFREAIDAVSGIASAEHGQVAVAALPS FT LAARLLPRVLMAYRQAHPGVALKVHDTLSGPAFDLVRAGEVDFALTAADPQQADLHYVP FT MMSDSFILLIPQDHALARGKGPLRWADTLAAPHVSMVHPSSVRQYAEWAFLQNRIRFQP FT AFEAEHLATIVAMVECGFGVAALPEIAAAAVAHSGIVEHPLTGPVAERSIGLVTSRNRT FT LSPAAAALVAQLREHLAASAYKPAPAAPSARTTAARARSRETAPGSPGAPRR" FT misc_feature 79751..79930 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.5e-18" FT misc_feature 79793..79885 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 80000..80626 FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 2.1e-46" FT CDS complement(80658..81950) FT /transl_table=11 FT /locus_tag="BPP1374" FT /product="putative membrane protein" FT /note="Similar to Agrobacterium tumefaciens putative FT transmembrane protein DctM SWALL:Q9F7C8 (EMBL:AF282677) FT (416 aa) fasta scores: E(): 4.9e-61, 43.9% id in 410 aa, FT and to Pasteurella multocida hypothetical protein Pm1527 FT SWALL:Q9CKS9 (EMBL:AE006189) (442 aa) fasta scores: E(): FT 1.2e-58, 39.11% id in 427 aa" FT /db_xref="GOA:Q7WAK2" FT /db_xref="InterPro:IPR004681" FT /db_xref="UniProtKB/TrEMBL:Q7WAK2" FT /protein_id="CAE36676.1" FT /translation="MIESLSALGAMLALVFMRVPVAFAMALVGFVGLGLLRGWPPAYAM FT AGSVIYESGFQYLLSVLPLFILMGNFVTESRMSRELYAAAHALLGHRRGGLAMSTIAAC FT GGFGAICGSSLATAATMAKVAYPEMRRMGYSEKLAAGSIAAGGTLGVLIPPSIIMVVYC FT LLTEQSIGKMFAAGVLPGVLAILCYMAAVAWVVRRDPAAGPRGPRSTWPHTLHALRQVW FT MVLALIGMLLGGIYGGLFTPAEAAGVGAFLSFLFACSRRAMTWRRFLDVVVESAKTTGM FT IFVVMIGALMLANFINFTSLPQDLLDVVARHQLSPLTVILAICVIYIVLGCVLESMSMI FT LLTVPVFYPLVQSLGFDLIWFGVIVVVVTEISFITPPFGMNVFVLRGLLPGVSTPTIFR FT GVMPFVVSDVVRLAILVLFPSISLLLPSYVR" FT misc_feature complement(join(80664..80720,80811..80876,80898..80999, FT 81045..81110,81174..81275,81363..81428,81456..81521, FT 81603..81668,81732..81788,81849..81914)) FT /note="10 probable transmembrane helices predicted for FT BPP1374 by TMHMM2.0 at aa 12-34, 54-73, 94-116, 143-165, FT 174-196, 225-259, 280-302, 317-351, 358-380 and 410-429" FT misc_feature complement(81072..81548) FT /note="HMMPfam hit to PF00597, DedA family, score 0.0052" FT misc_feature complement(81879..81950) FT /note="Signal peptide predicted for BPP1374 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.849 between residues 24 and 25" FT CDS complement(81943..82434) FT /transl_table=11 FT /locus_tag="BPP1375" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Rb0359 or Smb20373 SWALL:Q92WI0 (EMBL:AL603643) (155 aa) FT fasta scores: E(): 0.0014, 24.34% id in 152 aa, and to FT Escherichia coli hypothetical protein YiaM or B3577 FT SWALL:YIAM_ECOLI (SWALL:P37674) (157 aa) fasta scores: E(): FT 0.0014, 25.8% id in 155 aa" FT /db_xref="InterPro:IPR007387" FT /db_xref="UniProtKB/TrEMBL:Q7WAK1" FT /protein_id="CAE36677.1" FT /translation="MRILDRAVTALLRAIVVISLCGMSLLTVADATGRYLLNRPIMGTV FT EMVELLMVAVIFASIPLVTRARGHITVDSFSHLFSPATLRAQDCVAGLLALTVSACLAW FT VALRKAQSTADYGDMTPMLNIPLAPFVYAMAVLLALDAAYRLAALVGPAATQPEPTQDD FT " FT misc_feature complement(join(82003..82068,82114..82164,82246..82311, FT 82342..82407)) FT /note="4 probable transmembrane helices predicted for FT BPP1375 by TMHMM2.0 at aa 9-31, 41-63, 90-107 and 122-144" FT misc_feature complement(82348..82434) FT /note="Signal peptide predicted for BPP1375 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.982) with cleavage site FT probability 0.885 between residues 29 and 30" FT CDS complement(82444..83475) FT /transl_table=11 FT /locus_tag="BPP1376" FT /product="putative extracellular solute-binding protein" FT /note="Similar to Agrobacterium tumefaciens putative FT periplasmatic membrane protein DctP SWALL:Q9F7C9 FT (EMBL:AF282677) (330 aa) fasta scores: E(): 4.2e-20, 27.19% FT id in 342 aa, and to Pasteurella multocida DctP or Pm1525 FT SWALL:Q9CKT1 (EMBL:AE006189) (340 aa) fasta scores: E(): FT 4.5e-21, 28.78% id in 337 aa" FT /db_xref="GOA:Q7WAK0" FT /db_xref="InterPro:IPR018389" FT /db_xref="UniProtKB/TrEMBL:Q7WAK0" FT /protein_id="CAE36678.1" FT /translation="MMHKTLAAALFALGLAGTAPAIAQKPVELTLSSWLPPTHAVVADF FT LMPWGEEIRKATDGRVTLRLLPKAVTNPAGHFDAVRDGLVDVTFVSHAYYPGRFQLTKF FT AVLPFSGDTATSRSIAAWDTYEKYLLKADEHKGVRLLGIYAHGPGIAFTTSKPVKQIGD FT FQGLKIRVGGGMAADVAKAVGASPIAKPAPESYELLSTGVADGVFFPAESLVSFKLDSI FT IRHATEFPGGLYSDTHAVIINRDAFARLSKQDQDTLVRLSGRHLAELAGRAWDTHDAAA FT RKVLEGGEIELVKADDALIEAVRERTKGFEQAWLDAAKAKGIDGPAALASFRAEIKQLD FT QQR" FT misc_feature complement(82513..83385) FT /note="HMMPfam hit to PF03480, Bacterial extracellular FT solute-binding protein, family 7, score 2.4e-19" FT misc_feature complement(83407..83475) FT /note="Signal peptide predicted for BPP1376 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.983 between residues 23 and 24" FT CDS complement(83531..84490) FT /transl_table=11 FT /locus_tag="BPP1377" FT /product="conserved hypothetical protein" FT /note="Similar to Alcaligenes eutrophus hypothetical 34.2 FT kDa protein in gbd 5'region SWALL:Q44016 (EMBL:L36817) (324 FT aa) fasta scores: E(): 6.5e-35, 41% id in 317 aa, and to FT Yersinia pestis hypothetical protein Ypo2238 SWALL:Q8ZED6 FT (EMBL:AJ414151) (333 aa) fasta scores: E(): 1.9e-31, 35.64% FT id in 317 aa" FT /db_xref="GOA:Q7WAJ9" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7WAJ9" FT /protein_id="CAE36679.1" FT /translation="MRVLITGANGYIGRALAERLCALPGVPGYGALEQLTLCDLAFDAA FT PADPRVRQVAGDFADPATLAAITDPPPDLVFHLACVASGRAELEFELGLRVNLEGSLRL FT LEQLRRQGRSPGLVFTSSIAVYGAPLPALVTDDTPLAPALSYGAQKQAVEILLADYTRR FT GFVRGRAVRLPGVAPRPPAPNGAWSAFSSTLLRALAAGQPCEMPVGPQATLWLMSLPCC FT VDNLLRAAELTAQAPPPGGRTGWTLPALRVSVRDIVQAFDARSQGAATPLVSYTPRPDI FT EAQFGNQPPLQCDAAQAAGFRHDSSLPALLERAVGPPP" FT CDS complement(84478..85284) FT /transl_table=11 FT /locus_tag="BPP1378" FT /product="putative exported protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0550 SWALL:Q9I5Y6 (EMBL:AE004491) (265 aa) fasta FT scores: E(): 8.6e-34, 46.12% id in 258 aa, and to Ralstonia FT solanacearum hypothetical protein Rsc0020 or Rs01842 FT SWALL:Q8Y3G0 (EMBL:AL646057) (262 aa) fasta scores: E(): FT 1.6e-32, 43.96% id in 257 aa" FT /db_xref="HSSP:1K77" FT /db_xref="InterPro:IPR013022" FT /db_xref="UniProtKB/TrEMBL:Q7WAJ8" FT /protein_id="CAE36680.1" FT /translation="MKLAANLTLLYPGLPLAARMAAAREDGFAGVEILFPYDQPPAQLA FT AQLREHGLALALVNTPLGAAGEKGLACVPGREADFGAALDQALALCRATGCRIVHAMAG FT MPPAPAGMDECRATLIGNLQRAAPRAAQAGVTLTLEPLNRADMPGYFYYLPEQAADIIR FT AVDHPNVGLQFDIYHNLREGLDPHAELRRVLPLVRHVQFAGPDGRHEPDPASPPVAATL FT RLLAQSGYGGWMGCEYTPRGLASAGLKAWRGAYDAACGSGGAACAS" FT misc_feature complement(85216..85284) FT /note="Signal peptide predicted for BPP1378 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.867) with cleavage site FT probability 0.708 between residues 23 and 24" FT CDS complement(85281..86177) FT /transl_table=11 FT /locus_tag="BPP1379" FT /product="probable dehydrogenase" FT /note="Similar to Escherichia coli FT 2-hydroxy-3-oxopropionate reductase GarR or B3125 FT SWALL:GARR_ECOLI (SWALL:P23523) (294 aa) fasta scores: E(): FT 6.9e-20, 33.21% id in 277 aa, and to Pseudomonas aeruginosa FT probable 3-hydroxyisobutyrate dehydrogenase Pa3312 FT SWALL:Q9HYT2 (EMBL:AE004753) (296 aa) fasta scores: E(): FT 8.3e-38, 47.97% id in 296 aa" FT /db_xref="GOA:Q7WAJ7" FT /db_xref="InterPro:IPR006115" FT /db_xref="UniProtKB/TrEMBL:Q7WAJ7" FT /protein_id="CAE36681.1" FT /translation="MSATLAFCGAGLMGAPMIRRLLAAGHRVRVWNRSAAKAQALAADG FT AVVCATPAEAAAGAQAVLLCLTDLAAVQATVFGPHGVADVAGGLLVDHSSIEPDATRAL FT AARLLAASGRVWIDAPVSGGVAGAQAGTLSILAGGPAAAIEAAQPWLRAYAGRVTRLGD FT TGAGQIGKLCNQTIVATTVNAIAEAVALARRNGIDVAALDTALAGGWADSVLLRIFVPR FT MTAPVDQPLGALQTMLKNLENVAALAAASGTQLRGLQGVLDSYRTAAARGLGPGDLSDI FT VRVAWPERPAAPTREPA" FT misc_feature complement(85665..86174) FT /note="HMMPfam hit to PF03446, NAD binding domain of FT 6-phosphogluconate dehydrogenase, score 0.00021" FT misc_feature complement(86109..86177) FT /note="Signal peptide predicted for BPP1379 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.715) with cleavage site FT probability 0.695 between residues 23 and 24" FT CDS complement(86174..87886) FT /transl_table=11 FT /gene="ilvD" FT /locus_tag="BPP1380" FT /product="dihydroxy-acid dehydratase" FT /EC_number="4.2.1.9" FT /note="Similar to Mycobacterium tuberculosis dihydroxy-acid FT dehydratase IlvD or Rv0189c or Mt0199 or Mtci28.28C FT SWALL:ILVD_MYCTU (SWALL:O07433) (575 aa) fasta scores: E(): FT 7.6e-93, 49.01% id in 557 aa, and to Rhizobium loti FT dihydroxyacid dehydratase Mll1102 SWALL:Q98LB3 FT (EMBL:AP002996) (586 aa) fasta scores: E(): 8.1e-109, FT 56.17% id in 559 aa" FT /db_xref="GOA:Q7WAJ6" FT /db_xref="InterPro:IPR000581" FT /db_xref="UniProtKB/TrEMBL:Q7WAJ6" FT /protein_id="CAE36682.1" FT /translation="MSLHKHRSRMVTQGLTRTPHRAFLRATGFDDAALEKSMVGIVSTQ FT GENTPCSMALGPQADRARLGVAAGGGVPVSFSTISISDGTSMNHAGMRMSLLSRETIAD FT SVELVVRGHAYDALVAFAGCDKTLPAMMMAIVRLNVPAVFLYSGATLPGHAASGQVTIL FT DTIEAVGRVQHGTMPAAELKAMERTCTPSAGSCPGQFTANTMAMVGEALGLSPLGSAMM FT PAVYSERLAIAQRAGEHVMRALAAGGPLPRQLVTRASLENACAAVAATGGSTNAALHIP FT AIAHEAGIAFTLDDVARVFKRTPLIADLQPGGRYLARDLHEAGGVPVVLKALLDGGHID FT GSVLTLDGRTLAEALADTPAPDGKVVRACGQALHPTGGVAVLKGNLSPDGALLKIAGLK FT SLKFSGPARVFENEEACMRAVSTHAYQPGEVLVIRNEGPRGGPGMREMLSVTAALYGQG FT MGEKVALLTDGRFSGATRGLCIGYAGPEAAAGGPIALLRDGDMIHIDAEADTLDVALSD FT EELARRRAAYQAPPQARLAGALEKYAALVRPACLGAVTHSGQVDWPYETPEAE" FT misc_feature complement(86219..87781) FT /note="HMMPfam hit to PF00920, Dehydratase family, score FT 1.3e-240" FT misc_feature complement(86462..86497) FT /note="PS00887 Dihydroxy-acid and 6-phosphogluconate FT dehydratases signature 2." FT misc_feature complement(87485..87517) FT /note="PS00886 Dihydroxy-acid and 6-phosphogluconate FT dehydratases signature 1." FT CDS complement(87927..88607) FT /transl_table=11 FT /locus_tag="BPP1381" FT /product="putative GntR-family transcriptional regulator" FT /note="Similar to Rhizobium loti probable transcriptional FT regulator Mlr1038 SWALL:Q98LF9 (EMBL:AP002996) (226 aa) FT fasta scores: E(): 3.8e-22, 39.62% id in 212 aa, and to FT Pseudomonas aeruginosa probable transcriptional regulator FT Pa5525 SWALL:Q9HT48 (EMBL:AE004965) (246 aa) fasta scores: FT E(): 3.7e-17, 35.18% id in 216 aa" FT /db_xref="GOA:Q7WAJ5" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WAJ5" FT /protein_id="CAE36683.1" FT /translation="MPALTHPDPLVHTSVNEAIYRRLRDHLMRGDYAAGAVLGIQELAD FT AFGTSAMPVREALRRLVTQRALEPMKSRSVRVPVISRASLEDIRRARVLIEGHVTAWAV FT EHITAPELAELRALADQIGRSLSDTASVQAGLENNQRFHFTIYRAARSDSMLATIESLW FT LQSGPYLRATRELMHSDERPSAELHAAIVDAIARRDAESARAVMAQDISWAFDRLQALQ FT PAMP" FT misc_feature complement(87945..87974) FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2." FT misc_feature complement(88377..88553) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 0.00024" FT CDS complement(88704..89390) FT /transl_table=11 FT /locus_tag="BPP1382" FT /product="probable GntR-family transcriptional regulator" FT /note="Similar to Rhizobium loti probable transcriptional FT regulator Mlr2114 SWALL:Q98J42 (EMBL:AP002999) (223 aa) FT fasta scores: E(): 2.2e-26, 45.45% id in 198 aa, and to FT Agrobacterium rhizogenes Riorf32 protein SWALL:Q9F5G0 FT (EMBL:AP002086) (217 aa) fasta scores: E(): 2.6e-12, 32.99% FT id in 197 aa" FT /db_xref="GOA:Q7WAJ4" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WAJ4" FT /protein_id="CAE36684.1" FT /translation="MTLTALPADPPPADALDLDLAVEQLEEDIVFGRLFPRQRLTEDEL FT MARFGLKRHAVRQVLAQLEQRGAVERKRNVGAEVRAFTAREVMDLYDLRELLETRAAER FT IALPVDEARLAALVAVQREHDAAVAAGNARRVFRSNQRFHRELFGLLDNPVLQQAIEEY FT ARRTHPIRFGSLAAAGYRERARQEHWAMIQALRQGDRAALVALCRNHLLPSRDAYLAAA FT GLRASA" FT misc_feature complement(89154..89330) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 4e-08" FT misc_feature complement(89202..89276) FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT CDS complement(89397..91139) FT /transl_table=11 FT /gene="ilvD" FT /locus_tag="BPP1383" FT /product="putative dihydroxy-acid dehydratase" FT /note="Similar to Agrobacterium tumefaciens dihydroxy-acid FT dehydratase IlvD or Atu3971 or Agr_l_1769 SWALL:AAL44773 FT (EMBL:AE009327) (574 aa) fasta scores: E(): 1.3e-95, 47.92% FT id in 553 aa, and to Rhizobium meliloti putative FT dihydroxy-acid dehydratase protein IlvD1 or R00822 or FT Smc00884 SWALL:Q92RP0 (EMBL:AL591785) (574 aa) fasta FT scores: E(): 4.5e-92, 49.09% id in 550 aa" FT /db_xref="GOA:Q7WAJ3" FT /db_xref="InterPro:IPR000581" FT /db_xref="UniProtKB/TrEMBL:Q7WAJ3" FT /protein_id="CAE36685.1" FT /translation="MTQRDQGGKPPGGLSKGLTNYGDTGFSLFLRKAFIKGAGYTDDAL FT ARPVIGIVNTGSSYNPCHGNAPQLVEAVKRGVMLAGGLPVDFPTISVHESFSQPTSMYL FT RNLMSMDTEEMIRAQPMDAVVLIGGCDKTVPAQLMGAASAGVPAIQLVTGSMLTGSHRG FT ERVGACTDCRRYWGRYRADEIDTAEITDVNNQLVASVGTCSVMGTASTMACLTEALGMM FT ISGGASAPAVTADRIRVAERTGATAVAMAAARLTPERILTGKAIENALRVLLAIGGSTN FT GIVHLTAIAGRLGIDIDLTGLDRMSRETPVLVDLKPSGQHYMEDFHKAGGMPALLRELR FT PLLHLDALTVSGRTLGEELDAAPAPFAQEVIRAFDAPIYPVGGLAVLRGNLAPGGAIIK FT QSAADARLMEHEGRAVVFEDAEDMARRIDDDALDVTADDILVLKRIGPTGAPGMPEAGY FT MPIPRKLARAGVKDMVRVSDGRMSGTAAGTIVLHVTPEAAIGGPLAHVRNGDRIRLSVR FT QREISLLVSEAELAQRAAAQPIERPQAERGYRKLFLDTVTQADQGVDFDFLRAPASKQT FT VPPR" FT misc_feature complement(89442..91001) FT /note="HMMPfam hit to PF00920, Dehydratase family, score FT 1.2e-189" FT misc_feature complement(90720..90752) FT /note="PS00886 Dihydroxy-acid and 6-phosphogluconate FT dehydratases signature 1." FT CDS 91372..92376 FT /transl_table=11 FT /locus_tag="BPP1384" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 1.7e-46, 45.12% id in 328 aa, and to Rhizobium meliloti FT hypothetical protein Ra1058 ra1058 or sma1927 SWALL:Q92Y30 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 2.1e-52, 45.87% FT id in 327 aa" FT /db_xref="GOA:Q7WAJ2" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7WAJ2" FT /protein_id="CAE36686.1" FT /translation="MSDRQSARLPRRAALCSMLALCAGFALQPVAAQSAYPDRPIRMIV FT PYPPGGATDVIGRVLAKEMSGALGQSVVVENRAGAAGNIGADVVAKATPDGYTILMGAM FT TSHAINAVLYQGRVSYDIEKSFAPVAIVGTVPLVFVVNPAVPADSLQSLIALAKSKPGY FT LTMASAGNGSPQHLAGEMFKRVAGVDLLHVPYKGSGPAMTDLMGGQVLSMIETVPAAQG FT NVKGGKLRALAVASAQRVESLPDVPTTAEAGLPNFQVSSMFGIAAPAGTPVPVVERLNA FT VLKEALAKPEVQTALLNQGAISTWTTPADAAARISAERQQWATVIAEAGVKAE" FT misc_feature 91372..91464 FT /note="Signal peptide predicted for BPP1384 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.485 between residues 31 and 32" FT misc_feature 91408..91476 FT /note="1 probable transmembrane helix predicted for BPP1384 FT by TMHMM2.0 at aa 13-35" FT misc_feature 91537..92364 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 3e-115" FT CDS complement(join(92390..92542,92547..93035,93037..94029)) FT /pseudo FT /transl_table=11 FT /gene="alkJ" FT /gene_synonym="alcO" FT /locus_tag="BPP1385" FT /product="alcohol dehydrogenase [acceptor] (Pseudogene)" FT /EC_number="1.1.99.-" FT /note="Similar to Pseudomonas oleovorans alcohol FT dehydrogenase [acceptor] AlkJ or AlcO SWALL:ALKJ_PSEOL FT (SWALL:Q00593) (558 aa) fasta scores: E(): 9e-80, 41.54% id FT in 532 aa, and to Ralstonia solanacearum putative choline FT dehydrogenase lipoprotein oxidoreductase beta or Rsc3345 or FT Rs02583 SWALL:Q8XU48 (EMBL:AL646074) (544 aa) fasta scores: FT E(): 1.6e-87, 46.4% id in 543 aa" FT /db_xref="PSEUDO:CAE36687.1" FT misc_feature complement(join(92432..92542,92547..93035,93037..94005)) FT /note="HMMPfam hit to PF00732, GMC oxidoreductase, score FT 6.3e-179" FT misc_feature complement(93205..93249) FT /note="PS00624 GMC oxidoreductases signature 2." FT misc_feature complement(93703..93774) FT /note="PS00623 GMC oxidoreductases signature 1." FT CDS complement(94046..95053) FT /transl_table=11 FT /locus_tag="BPP1386" FT /product="putative exported protein" FT /note="Similar to Brucella melitensis aliphatic FT sulfonates-binding lipoprotein Bmeii0109 SWALL:Q8YDR6 FT (EMBL:AE009649) (319 aa) fasta scores: E(): 1.5e-23, 30.09% FT id in 329 aa, and to Streptomyces coelicolor putative FT lipoprotein Sc8g12.22 SWALL:Q9KYY3 (EMBL:AL355753) (340 aa) FT fasta scores: E(): 3.9e-20, 28.04% id in 328 aa" FT /db_xref="GOA:Q7WAJ1" FT /db_xref="InterPro:IPR019546" FT /db_xref="UniProtKB/TrEMBL:Q7WAJ1" FT /protein_id="CAE36688.1" FT /translation="MMNPQRRTLLKTGALAAAMAGIGIPSLARARDKVRVGYLHTPAVD FT GQIWTGQQTGAFAKHGLDLELIQFTTGLELFQAMIGGSLDMLSTGAVVSNFPARGQGKV FT FLVNNIEYATAQLWVRDDAGIKTLADLKGKKISTTTGTTAHVFLDRALRSVGLQAGKDV FT QIVNQRMAEAVTSFISGAVPAVALWVPFDVTIRQKLPGARKLLDASTFYPEAAIVGGWA FT ARNDYYDKNPKIINALIQAWAETNDYLLSHTDEALVALQKNHYQQVPLPDLKEQFKASK FT YFTAAEWRQRYADGTVTRWLQQVTDFFVQSANIAQPVPAERYFDPKPYLEAVRA" FT misc_feature complement(94964..95053) FT /note="Signal peptide predicted for BPP1386 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.887 between residues 30 and 31" FT CDS complement(95076..95897) FT /transl_table=11 FT /locus_tag="BPP1387" FT /product="ATP-binding component of ABC transporter" FT /note="Similar to Streptomyces coelicolor putative FT ABC-transport protein, ATP-binding component Sc8g12.21 FT SWALL:Q9KYY4 (EMBL:AL355753) (270 aa) fasta scores: E(): FT 2.8e-40, 46.79% id in 265 aa, and to Agrobacterium FT tumefaciens ABC transporter, nucleotide binding/ATPase FT protein Atu0159 or Agr_c_259 SWALL:AAK85980 (EMBL:AE008990) FT (266 aa) fasta scores: E(): 7.9e-40, 46.56% id in 262 aa" FT /db_xref="GOA:Q7WAJ0" FT /db_xref="HSSP:1F3O" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WAJ0" FT /protein_id="CAE36689.1" FT /translation="MSATPASDVRIRFEDVCVDYPTADGPMRVLDGINYEIRQGEFVSV FT IGPSGCGKTTMMGLVGGFVQPTAGRVLLDGQPVGGPGPDRGVIFQEYGVFPWLTVRENI FT AFGLNLRSNRVAAGERAQICQRYMTLMGLSDFAHHYPKHLSGGMRQRLALARAYAVKPQ FT FLLMDEPFGALDAQTRSAMQDLLLQVQMTEGKTVMLITHSVEEAIYLSSRIVVVTARPA FT RIRTIIDVPFGYPRAENLHEDPRFGELRSHIRALVMEEYAKQARQTVRLSD" FT misc_feature complement(95238..95780) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.7e-55" FT misc_feature complement(95424..95468) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(95736..95759) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(95917..96684) FT /transl_table=11 FT /locus_tag="BPP1388" FT /product="permease component of ABC transporter" FT /note="Similar to Escherichia coli taurine transport system FT permease protein TauC or SsiC or B0367 SWALL:TAUC_ECOLI FT (SWALL:Q47539) (275 aa) fasta scores: E(): 6.8e-30, 34.48% FT id in 261 aa, and to Brucella melitensis taurine transport FT system permease protein tauc bmeii0107 SWALL:Q8YDR8 FT (EMBL:AE009649) (246 aa) fasta scores: E(): 4e-36, 46.05% FT id in 228 aa" FT /db_xref="GOA:Q7WAI9" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7WAI9" FT /protein_id="CAE36690.1" FT /translation="MKRRSALMRALLVLAPWLLIVLLWYGIRASGLVSPALVPSPGEVW FT TRFVALMQARLPHDILMSTQRVFVGVCLGTLLAVPVGFVLGWYRGVRSFIDPVINFFRA FT LPPIALIPLVIVYFGIGETAKIAILFYASFFAGVIVMYEGISQINPIFVRVAKTLGATD FT GEIFRKVIVPLTIPHMLTALRVALGVAWATLVASELIAAQQGLGALIQDASSFFQLDII FT YVGIICIGFIALAMDLALRAAARRLVAWQDRIA" FT misc_feature complement(join(95953..96018,96064..96129,96241..96306, FT 96322..96387,96424..96489,96604..96669)) FT /note="6 probable transmembrane helices predicted for FT BPP1388 by TMHMM2.0 at aa 5-27, 65-87, 99-121, 126-148, FT 185-207 and 222-244" FT misc_feature complement(96040..96255) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 4.8e-12" FT misc_feature complement(96166..96252) FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT misc_feature complement(96268..96315) FT /note="PS00038 Myc-type, 'helix-loop-helix' dimerization FT domain signature." FT misc_feature complement(96592..96684) FT /note="Signal peptide predicted for BPP1388 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.899) with cleavage site FT probability 0.228 between residues 31 and 32" FT CDS 96784..97509 FT /transl_table=11 FT /locus_tag="BPP1389" FT /product="putative GntR-family transcriptional regulator" FT /note="Similar to Deinococcus radiodurans transcriptional FT regulator, GntR family Dra0211 SWALL:Q9RYU6 (EMBL:AE001863) FT (279 aa) fasta scores: E(): 1.4e-13, 30.04% id in 233 aa, FT and to Ralstonia solanacearum putative DNA-binding FT transcriptional regulatory transcription regulator protein FT Rsp0079 or rs05542 SWALL:Q8XTM7 (EMBL:AL646076) (273 aa) FT fasta scores: E(): 1.3e-14, 31.53% id in 241 aa" FT /db_xref="GOA:Q7WAI8" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WAI8" FT /protein_id="CAE36691.1" FT /translation="MAINFHDSPIPRYLQLADLMRQRIARGQWGQGHRLPSLEELVAEF FT GVARVTVRQAIDVLTREGLVSPQQGRGTFVTGLPPNDRWLQVQTTLAELAKVYRDTKPK FT IVNIDETITNPPLTAQDGVAAERYVYMRRVHEREGRPYCVINIYLDEQIFRRDPVRYRN FT ETVIPLLVSDPALRIARAHQVLTIGTADMEVAGHLQVPVNTPIAEVRRLFLDEAGKVVY FT LSEVSYRGDFIHLEMNLIP" FT misc_feature 96829..97008 FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 8.6e-18" FT CDS 97517..98665 FT /transl_table=11 FT /locus_tag="BPP1390" FT /product="putative mandelate racemase/muconate lactonizing FT enzyme" FT /note="Similar to Streptomyces coelicolor putative racemase FT Sce65.16C SWALL:Q9RKF7 (EMBL:AL133236) (361 aa) fasta FT scores: E(): 4e-21, 32.43% id in 370 aa, and to FT Agrobacterium tumefaciens hypothetical protein Atu3139 or FT Agr_l_3340 SWALL:AAL43955 (EMBL:AE009244) (378 aa) fasta FT scores: E(): 6.4e-26, 32.36% id in 377 aa" FT /db_xref="GOA:Q7WAI7" FT /db_xref="InterPro:IPR018110" FT /db_xref="UniProtKB/TrEMBL:Q7WAI7" FT /protein_id="CAE36692.1" FT /translation="MTRDAAPITPARVRAHVFRYPVSTPVKTSFGTMHDRPAVLVEVED FT SDGAVGWGEVWCNFPACGAEHRARLVETVLAPLLTARAFADPAQAFAHLEARTAVLAIQ FT TGEPGPLAQAIAGLDIALCDLAARRAGEPLWAWLGGSGDRIGVYASGINPENPEDVVAR FT KAAEGYRAFKLKVGFDDARDVRNALHVRELLGAATPLMADANQGWDLPRARQMAQRLGP FT AQLDWLEEPLRADRPAAEWAELAQAAPMPLAGGENIAGVAAFETALAARSLRVMQPDLA FT KWGGFSGCLPVARAVVAAGLRYCPHYLGAGIGLQASAHLLAAVPGLASPGLLEVDANDN FT PLRSLLSPALATLHEGRITLGGAPGLGVTPDLAALRAACAAR" FT misc_feature 97538..97933 FT /note="HMMPfam hit to PF02746, Mandelate racemase / FT muconate lactonizing enzyme, N-terminal domain, score FT 4.9e-12" FT misc_feature 97892..98653 FT /note="HMMPfam hit to PF01188, Mandelate racemase / FT muconate lactonizing enzyme, C-terminal domain, score FT 2.1e-10" FT misc_feature 98114..98209 FT /note="PS00909 Mandelate racemase / muconate lactonizing FT enzyme family signature 2." FT CDS complement(98681..99601) FT /transl_table=11 FT /locus_tag="BPP1391" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa2534 SWALL:Q9I0V0 FT (EMBL:AE004681) (303 aa) fasta scores: E(): 9.5e-55, 50.34% FT id in 294 aa, and to Rhizobium loti probable FT transcriptional regulator Mlr1983 SWALL:Q98JE3 FT (EMBL:AP002998) (297 aa) fasta scores: E(): 5.4e-54, 47.47% FT id in 297 aa" FT /db_xref="GOA:Q7WAI6" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WAI6" FT /protein_id="CAE36693.1" FT /translation="MDRFDSLQLFTRIVELGSFSRAAAALDIPRATATHAIKQLEARLG FT ARLLDRTTRHVRATPDGQAFYERCVHVLSELDDAQSSLQRVASNPRGLLRVDMHSTHAT FT KIVLPRIDDFRARYPGIDLAVSGGDRLVDLVREGIDCVIRAGNPRDSSLVARRLAVMPQ FT VICASPEYLAAFGAPRHPDELAAHRVVKFFAASAAVDYPLELRIGGEIRAFALNGWISV FT SDAENYVVCALRGCGLIQLPRFHVEDDLRAGRLVEVLSDWPSPDLPVSALYPSHRHLSP FT RVRVFVDWLGKLYEEAFPAAAPARR" FT misc_feature complement(98717..99343) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 6.3e-46" FT misc_feature complement(99413..99592) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 6.4e-17" FT misc_feature complement(99458..99550) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 99716..100456 FT /transl_table=11 FT /locus_tag="BPP1392" FT /product="probable short-chain dehydrogenase" FT /note="Similar to Bacillus subtilis 3-oxoacyl-[acyl-carrier FT protein] reductase FabG SWALL:FABG_BACSU (SWALL:P51831) FT (246 aa) fasta scores: E(): 1.1e-27, 42.91% id in 240 aa, FT and to Pseudomonas aeruginosa probable short-chain FT dehydrogenase Pa1470 SWALL:Q9I3P2 (EMBL:AE004576) (245 aa) FT fasta scores: E(): 5.5e-57, 71.6% id in 243 aa" FT /db_xref="GOA:Q7WAI5" FT /db_xref="HSSP:1Q7B" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7WAI5" FT /protein_id="CAE36694.1" FT /translation="MNMDISKAAIVTGGSRGIGRAIAARLAADGFAVVVNYAGNGAKAH FT ATVAAIESAGGKAIAIQGDVGKPQDVANLFAQARAAFGRIDVVVNSAGVMPMASIDAAN FT LDAFDQVIATNLRGAFLVLAQAAANLGDDGRIIALSTSVIAKSLPGYGPYIASKAGVEG FT LVHVLANELRGRNITVNAIAPGPVGTDLFFNGKSEEAVASIARQAPMERIGMPDEIAAA FT VSFLAGPDGRWVNAQVLRVNGGFA" FT misc_feature 99728..100450 FT /note="HMMPfam hit to PF00106, short chain dehydrogenase, FT score 9.6e-66" FT CDS complement(100588..101361) FT /transl_table=11 FT /locus_tag="BPP1393" FT /product="putative lipoprotein" FT /note="Similar to Salmonella typhi putative lipoprotein FT Sty0979 SWALL:Q8Z804 (EMBL:AL627268) (253 aa) fasta scores: FT E(): 3.5e-46, 53.3% id in 257 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa0277 SWALL:Q9I6L3 FT (EMBL:AE004465) (252 aa) fasta scores: E(): 2.3e-50, 55.85% FT id in 256 aa" FT /db_xref="GOA:Q7WAI4" FT /db_xref="InterPro:IPR001915" FT /db_xref="UniProtKB/TrEMBL:Q7WAI4" FT /protein_id="CAE36695.1" FT /translation="MMKSKTKLLGGALAASLLLAGCASMKSMDTNSLLSAGSDMAKAAN FT LSDADIIQLSDAACKQSDQESKIAPAGNKYSVRLTKLMRGFGNMTLNGQKVNYKVYMTE FT DVNAWAMGNGCVRVYTGLMDLMNDDELRGVIGHEMGHVALGHTKKAMQTAYAVSAARQA FT AGAAGNSVVASLSASQLGEMTEKFINAQFSQSQETAADDFSFDLLTEKKMNRKGLVTAF FT QKLAELDGGESSMFSSHPSSPDRAARMEKRLQAGK" FT misc_feature complement(100594..101094) FT /note="HMMPfam hit to PF01435, Peptidase family M48, score FT 5.2e-05" FT misc_feature complement(101239..101361) FT /note="Signal peptide predicted for BPP1393 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.611 between residues 41 and 42" FT misc_feature complement(101296..101328) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 101641..102063 FT /transl_table=11 FT /locus_tag="BPP1394" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti hypothetical protein FT Mlr7891 SWALL:Q984Q5 (EMBL:AP003012) (140 aa) fasta scores: FT E(): 4.5e-33, 64.49% id in 138 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa4518 SWALL:Q9HVQ4 FT (EMBL:AE004865) (141 aa) fasta scores: E(): 1.2e-11, 39.7% FT id in 136 aa" FT /db_xref="InterPro:IPR004360" FT /db_xref="UniProtKB/TrEMBL:Q7WAI3" FT /protein_id="CAE36696.1" FT /translation="MQANLTVITLGVDDLERALRFYRDGLGLPTAGIVGREFEHGAVVF FT IDLQAGLKLALWPRRSLAHDTGLPLAPPSATELSLGHNVTSRAEVDAVMAQAAQAGAAI FT VKPAGDTFWGGYAGYFQDPDGHLWEVVHNPQLAPAG" FT misc_feature 101671..102054 FT /note="HMMPfam hit to PF00903, Glyoxalase/Bleomycin FT resistance protein/Dioxygenase superfamily, score 4.7e-12" FT CDS 102185..103378 FT /transl_table=11 FT /locus_tag="BPP1395" FT /product="putative membrane protein" FT /note="Similar to Ralstonia solanacearum probable multidrug FT transport transmembrane protein Rsp0429 or Rs00888 FT SWALL:Q8XSN8 (EMBL:AL646078) (399 aa) fasta scores: E(): FT 3.8e-84, 60.93% id in 384 aa, and to Rhizobium loti FT hypothetical protein Mlr8412 SWALL:Q983A8 (EMBL:AP003014) FT (405 aa) fasta scores: E(): 1e-54, 43.52% id in 386 aa" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7WAI2" FT /protein_id="CAE36697.1" FT /translation="MPSRSAQSSSNVLRLAAAQALAGANTTVVYATAAIIGEALAPSKS FT LATLPISVFVVGMAASTLPAGAVAQRHGRRAAFMLGTLCGVLLGLLAALGIYLESFALF FT CAAMAFGGAYAAVVLTFRFAAAECVEPHRKARALSTVLAGGVLAGVLGPQLVSYTMDAW FT SGHVFAGTYLAASAVAVLAAVVLGGVDLPRPARAAAAGGRPLRVIARQPRFIAAVVCGV FT VTYMLMNFLMTSAPLAMRMHGLSQHASNLGVQWHVIAMYAPSFVAGGLITRHGAVPVVA FT AGLLLTAAAAVVGLAGMDAWHFWVSLTLLGVGWNFGFAGASAMVLECHLPQERTRVQAA FT NDFIIFGTMVVGSFVSGDLLMRYGWEVVCWLALPPLAVAAFALRWFKPLPAGAAGRA" FT misc_feature 102185..102277 FT /note="Signal peptide predicted for BPP1395 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.971) with cleavage site FT probability 0.415 between residues 31 and 32" FT misc_feature join(102242..102310,102323..102391,102410..102478, FT 102491..102559,102596..102655,102683..102751, FT 102827..102895,102938..102997,103010..103078, FT 103106..103174,103211..103264,103274..103342) FT /note="12 probable transmembrane helices predicted for FT BPP1395 by TMHMM2.0 at aa 20-42, 47-69, 76-98, 103-125, FT 138-157, 167-189, 215-237, 252-271, 276-298, 308-330, FT 343-360 and 364-386" FT CDS complement(103385..104296) FT /transl_table=11 FT /locus_tag="BPP1396" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa2469 SWALL:Q9I113 FT (EMBL:AE004674) (304 aa) fasta scores: E(): 2.3e-38, 38.25% FT id in 298 aa, and to Salmonella typhimurium, and Salmonella FT typhi putative transcriptional regulator, LysR family FT Stm2180 or Sty2410 SWALL:Q8XG81 (EMBL:AE008797) (302 aa) FT fasta scores: E(): 1.2e-33, 37.74% id in 302 aa" FT /db_xref="GOA:Q7WAI1" FT /db_xref="HSSP:1I69" FT /db_xref="InterPro:IPR005119" FT /db_xref="UniProtKB/TrEMBL:Q7WAI1" FT /protein_id="CAE36698.1" FT /translation="MLTNWIDRLRPRHLRLLIRLCETGNLTEVAIEYGISQPALSKWLK FT DLEADIGQRLFVREPRGVTPTACARELQAHARAIIGRLERARTAVDHIASGFAGHLSVG FT FSPVVGPVVLPESIRRFRAAYPDVLVSVIEASIDLLLPGLRNGDFDIVVGRLEEVAMPE FT DVRCETLYDEPVCLVAGRAHPLAGRRRISWEDAQAYPWISPQQGTPLRMRLEMELAVAG FT QPLPRHAVESTSVQTNVALLDRSDMIAPMSRRLAEHFQRQGVLRILPLTLGSGGPIGML FT WRADGVHGTHTAHFIACLRQAV" FT misc_feature complement(103391..104017) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 5.3e-41" FT misc_feature complement(104087..104266) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 3.1e-18" FT misc_feature complement(104132..104224) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 104423..106009 FT /transl_table=11 FT /locus_tag="BPP1397" FT /product="probable sulfatase" FT /note="Similar to Burkholderia caryophylli phosphonate FT monoester hydrolase PehA SWALL:Q45087 (EMBL:U44852) (514 FT aa) fasta scores: E(): 2.1e-13, 28.98% id in 552 aa, and to FT Pseudomonas aeruginosa probable sulfatase Pa2333 FT SWALL:Q9I1E5 (EMBL:AE004659) (538 aa) fasta scores: E(): FT 1.7e-09, 31.65% id in 537 aa" FT /db_xref="GOA:Q7WAI0" FT /db_xref="HSSP:1E33" FT /db_xref="InterPro:IPR017849" FT /db_xref="UniProtKB/TrEMBL:Q7WAI0" FT /protein_id="CAE36699.1" FT /translation="MSQPNFLLFITDQHRADHLGAYGNSQIRTPALDALARRGWLAERF FT YVASPICMPNRATLMTGRMPSAHGARHNGIPLSQRATTFVERLRQAGYGTALVGKSHLQ FT NMTGNGPVWPRPQDPPAEGEAWAPEPGDYDQEWGPLWREDPAHDLATPFYGFSQVDLAV FT DHGDRVWGHYWRWLQREHPEVAAQAGPDHALPAPGFELVRAGQAWRTRVPESCSTTAYL FT GRRTMQALDGYAQRGQPFFIQCSFPDPHHPFTPPGKYWDMYRPEDVELPASFHASAAAG FT RQPPPHVQWMYAQRDSGRAVKHTPAMFACTEREAREAIALNYGSISHIDHTVGEVLAHL FT QRLGLADNTVVIFTSDHGDYLGDHQLLWKGPVHYQSVIRTPFIWADPAGAQGARSDALC FT STTDIAPTILARAGLLPYNGIQGADLGALMRGEQAAPREAVLIEEEGQRVMFGFDKRVR FT MRTLQTGRYRMSVYHGVSWGELYDLREDPLELRNLWDEPGSAALRQDLLFQLAQNLIGH FT GETSPHPTALA" FT misc_feature 104432..105883 FT /note="HMMPfam hit to PF00884, Sulfatase, score 7.9e-27" FT misc_feature 104702..104725 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 106051..107028 FT /transl_table=11 FT /locus_tag="BPP1398" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 9.3e-35, 39.75% id in 322 aa, and to Rhizobium meliloti FT hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 4.5e-37, 38.67% FT id in 331 aa" FT /db_xref="GOA:Q7WAH9" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7WAH9" FT /protein_id="CAE36700.1" FT /translation="MRIFQALRHAALAAALSLGAAAAATAAYPDKPVRLVVNFTPAGPL FT DLLARLVAERASRELGQTVIVENRAGAGGNIGADVVAKSAPDGYTLLITTDTLATVNPF FT VYASMPADPFKDLQPVALTGTFNQVLVVQPSLGVRNLADYMAYLRQHGGTYASAGNATP FT GHLTFESLRQALDLDVTHVPYRGTAPAVNDLLGGQVEAGFLVVPGVLQHIQAGKLVPLA FT VSGAQRDAALPDVPTIAESGLAQVRDFDTSFGYLLMAPAGVPDEAVQAWQRVLARIYAS FT PEFLERLAALDIAPTFGDAQQAAQWMRTRAARWEKVVAAAGIKP" FT misc_feature 106051..106128 FT /note="Signal peptide predicted for BPP1398 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.605 between residues 26 and 27" FT misc_feature 106069..106137 FT /note="1 probable transmembrane helix predicted for BPP1398 FT by TMHMM2.0 at aa 7-29" FT misc_feature 106192..107019 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.7e-80" FT CDS complement(107049..107561) FT /transl_table=11 FT /locus_tag="BPP1399" FT /product="putative membrane protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7WAH8" FT /protein_id="CAE36701.1" FT /translation="MMRHERLRFWLAGLAAAATGWLCYAGLARLAGALGVATWIPYPAL FT RRQWLLIGESWQSAEFSGAIADASVFLTALAAVAAYYCARIVYHLSFAPVRQRRARWLI FT AGWIVGTVAMVALSQSLGWLYGAFPGFARIGWLSAALGFAVLAGAASGFARAWGRLMRA FT RKVPATE" FT misc_feature complement(join(107091..107156,107187..107252, FT 107292..107357,107475..107540)) FT /note="4 probable transmembrane helices predicted for FT BPP1399 by TMHMM2.0 at aa 7-29, 68-90, 103-125 and 135-157" FT misc_feature complement(107469..107561) FT /note="Signal peptide predicted for BPP1399 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.990) with cleavage site FT probability 0.348 between residues 31 and 32" FT CDS 108060..109565 FT /transl_table=11 FT /locus_tag="BPP1400" FT /product="probable membrane protein" FT /note="Similar to Ralstonia solanacearum probable FT transmembrane protein Rsc0793 or Rs05044 SWALL:Q8Y197 FT (EMBL:AL646061) (500 aa) fasta scores: E(): 4.1e-134, 72.2% FT id in 500 aa, and to Agrobacterium tumefaciens hypothetical FT protein Atu0118 or Agr_c_184 SWALL:Q8UJ20 (EMBL:AE008986) FT (501 aa) fasta scores: E(): 3.6e-122, 65.46% id in 501 aa" FT /db_xref="InterPro:IPR002823" FT /db_xref="UniProtKB/TrEMBL:Q7WAH7" FT /protein_id="CAE36702.1" FT /translation="MELLQNLALGFSVAFTPENLLYALLGCVLGTLVGVLPGLGPVPTI FT AMLLPITYVLPPVAGLIMLAGIYYGTQYGGATTAILVNLPGETSAVVTVLDGHQMARNG FT RAGAALALAAIGSFFAGTVATMLIAAFAPPLAEVAFKFGPAEYFSLMVLGLIGAVVLAS FT GSILKAVAMIILGLLLGMVGTDVNSGVARYDFGIPELQDGIDFAIVAMGVFGFAEILTN FT LEQKENRVDITDKVGSLYPNKQEMREAAPAIVRGTALGSCLGILPGGGSVLSAFASYSL FT EKKLSRNPERFGKGHPAGLAGPESANNAGAQTSFIPLLTLGIPGNAVMALMVGAMTIHN FT IQPGPQVMTSHPELFWGLIASMWIGNLMLVVLNLPLVGLWVKLLKVPYRILYPAILVFC FT TIGVYSLNYNVFDVFVTAIFGVVGYVWSKLKCEGAPLLLGLVLGPMMEENFRRALLLSR FT GDFLTFVERPLSASLLGAAALLVIIVALPSIRKKRDETFVEEE" FT misc_feature 108114..109373 FT /note="HMMPfam hit to PF01970, Integral membrane protein FT DUF112, score 7e-115" FT misc_feature join(108117..108185,108198..108266,108381..108449, FT 108492..108560,108564..108632,108675..108728, FT 109008..109076,109134..109202,109221..109289, FT 109449..109517) FT /note="10 probable transmembrane helices predicted for FT BPP1400 by TMHMM2.0 at aa 44-66, 71-93, 132-154, 169-191, FT 193-215, 230-247, 341-363, 383-405, 412-434 and 488-510" FT CDS complement(109663..110127) FT /transl_table=11 FT /locus_tag="BPP1401" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti probable transcriptional FT regulator Mlr1478 SWALL:Q98KH0 (EMBL:AP002997) (148 aa) FT fasta scores: E(): 1.8e-17, 47.79% id in 136 aa, and to FT Brucella melitensis transcriptional regulator, MarR family FT Bmeii0520 SWALL:Q8YCK8 (EMBL:AE009688) (145 aa) fasta FT scores: E(): 8.8e-16, 49.58% id in 121 aa" FT /db_xref="GOA:Q7WAH6" FT /db_xref="InterPro:IPR000835" FT /db_xref="UniProtKB/TrEMBL:Q7WAH6" FT /protein_id="CAE36703.1" FT /translation="MSDVQTSSPSPAPPRGRKLDKADFAALADLRYALRRFMAFSEAAA FT TESGLTAQQHQALLAIKASDDTLSVGELADRLLIRHHSAGELVDRLARMDMVRRIPSNA FT DRRRVLVALTPLAEHTLDTLSAAHVEELRSVGPLLRTLLSYFDSPAYRRK" FT CDS complement(110237..110662) FT /transl_table=11 FT /gene="stbB" FT /locus_tag="BPP1402" FT /product="putative plasmid stability protein" FT /note="Similar to Pseudomonas syringae plasmid stability FT protein StbB SWALL:STBB_PSESM (SWALL:Q52562) (139 aa) fasta FT scores: E(): 1.3e-20, 46.76% id in 139 aa, and to Rhizobium FT sp. putative plasmid stability protein Y4jK FT SWALL:Y4JK_RHISN (SWALL:P55511) (140 aa) fasta scores: E(): FT 2.9e-21, 48.57% id in 140 aa" FT /db_xref="InterPro:IPR002716" FT /db_xref="UniProtKB/TrEMBL:Q7WAH5" FT /protein_id="CAE36704.1" FT /translation="MILLDTDVLLEPLRPAPDPAVAAWLDAQHVETLYLAAPGAAEIQL FT GLARLPRGKRAEALRHEFERRVLPLFMGHVLPFDTAAADAYAAVMMRAAAAGHALCAID FT GCIAAIATAHGLAIATRHPARFEAAGLAAVDPWHAAA" FT misc_feature complement(110252..110659) FT /note="HMMPfam hit to PF01850, PIN domain, score 7.3e-13" FT CDS complement(110659..110898) FT /transl_table=11 FT /gene="stbC" FT /locus_tag="BPP1403" FT /product="putative plasmid stability protein" FT /note="Similar to Pseudomonas syringae plasmid stability FT protein StbC SWALL:STBC_PSESM (SWALL:Q52561) (103 aa) fasta FT scores: E(): 8.2e-12, 51.76% id in 85 aa, and to Rhizobium FT sp. putative plasmid stability protein Y4jJ FT SWALL:Y4JJ_RHISN (SWALL:P55510) (85 aa) fasta scores: E(): FT 1.5e-13, 60% id in 85 aa" FT /db_xref="GOA:Q7WAH4" FT /db_xref="InterPro:IPR005569" FT /db_xref="UniProtKB/TrEMBL:Q7WAH4" FT /protein_id="CAE36705.1" FT /translation="MSSITVRNVPEEVHRALRVRAATHGRSTEAEIRAILENAVLPDGR FT VKLGTLLSHIGRGARGMDLTIERNPAPARPASFE" FT CDS complement(110972..111814) FT /transl_table=11 FT /locus_tag="BPP1404" FT /product="putative AraC-family transcriptional regulator" FT /note="Similar to Xylella fastidiosa transcriptional FT regulator Xf1254 SWALL:Q9PDX5 (EMBL:AE003959) (280 aa) FT fasta scores: E(): 5.5e-44, 45.98% id in 274 aa, and to FT Agrobacterium tumefaciens transcriptional regulator, AraC FT family Atu4575 or Agr_l_593 SWALL:Q8U779 (EMBL:AE009385) FT (321 aa) fasta scores: E(): 4.1e-15, 31.37% id in 290 aa" FT /db_xref="GOA:Q7WAH3" FT /db_xref="InterPro:IPR000005" FT /db_xref="UniProtKB/TrEMBL:Q7WAH3" FT /protein_id="CAE36706.1" FT /translation="MDRLSALLERFRVRTALLHAGTLCGHHRFEAQPGRAFLHVLRRGD FT MEVRHRPGETALPRLRLAEPTLLFYPRPLHHEFINPPAEGPDLTCATLDFEGGDRHPLV FT RSLPPVVCVPLDAVAGLRPALDLLFAEADQVRCGSRVLADRLFEVVLIQLLRWMLDHPA FT QVGVSNGLIMGLSDPRLAKALAALHGAPGQAWPLTRMADIAGMSRSAFAAAFKTATGVT FT PAAYLADWRLSLAASMLRAGHPMKRIAPELGFAGVPALSKAFRQRMGASARQWLDAQR" FT misc_feature complement(110984..111112) FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family, score 0.85" FT misc_feature complement(110999..111124) FT /note="PS00041 Bacterial regulatory proteins, araC family FT signature." FT misc_feature complement(111131..111268) FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family, score 8e-07" FT misc_feature complement(111146..111280) FT /note="PS00041 Bacterial regulatory proteins, araC family FT signature." FT CDS 111952..112497 FT /transl_table=11 FT /gene="mip" FT /locus_tag="BPP1405" FT /product="conserved hypothetical protein" FT /note="Similar to Legionella pneumophila Mip SWALL:Q53427 FT (EMBL:S71704) (184 aa) fasta scores: E(): 1.7e-22, 44.57% FT id in 175 aa, and to Anabaena sp. hypothetical protein FT Alr7524 SWALL:Q8ZSI6 (EMBL:AP003602) (193 aa) fasta scores: FT E(): 6.8e-10, 30.06% id in 163 aa" FT /db_xref="InterPro:IPR010195" FT /db_xref="UniProtKB/TrEMBL:Q7WAH2" FT /protein_id="CAE36707.1" FT /translation="MSRVLLIDPSQAGAERQAILAQIQGAFGATPNMFKAVANSAAALK FT SMWEAFGALGGGVIAARLGEQIAVAVANRNRCEYCLAAHTALGRKAGASAGDMAAAQDG FT RSADPRTAAALRFALQLVEARGQVGEAEVQAVRAAGFSDEEIVEILAHVALNLFTNYVN FT VAFAVPVDFPKVALRQAA" FT CDS 112556..113068 FT /transl_table=11 FT /locus_tag="BPP1406" FT /product="conserved hypothetical protein" FT /note="Similar to Corynebacterium glutamicum FT thiol-disulfide isomerase and thioredoxins cgl0914 FT SWALL:BAB98307 (EMBL:AP005276) (160 aa) fasta scores: E(): FT 1.4e-28, 50.64% id in 154 aa" FT /db_xref="GOA:Q7WAH1" FT /db_xref="InterPro:IPR012335" FT /db_xref="UniProtKB/TrEMBL:Q7WAH1" FT /protein_id="CAE36708.1" FT /translation="MSRHEALATVTAPPLQVDAWLNTPHPLELARLRGQVVVLHAFQML FT CPGCLAHGLPQAERLHRLFRDDGVVVIGLHTVFEHHAVMGPEALRVFNHEYRWSFPIGI FT DRPDPEGDMPMTMRAYSLGGTPSLVLLDRRGRIRLHHLGRLDDLALGAAIGRLLAEDAE FT PAGAPPA" FT CDS 113095..113382 FT /transl_table=11 FT /locus_tag="BPP1407" FT /product="conserved hypothetical protein" FT /note="Similar to Streptomyces coelicolor hypothetical 7.8 FT kDa protein Sc10f4.38C SWALL:Q9F3M3 (EMBL:AL450350) (69 aa) FT fasta scores: E(): 5.2e-13, 57.81% id in 64 aa, and to FT Streptomyces coelicolor hypothetical 9.9 kDa protein FT Scf43a.35C SWALL:Q9XA80 (EMBL:AL096837) (88 aa) fasta FT scores: E(): 0.00075, 29.07% id in 86 aa" FT /db_xref="UniProtKB/TrEMBL:Q7WAH0" FT /protein_id="CAE36709.1" FT /translation="MREARPRAGRAFATGGDGMTGKTAFRIGDHVAWNSEAGQVSGTII FT AIHTRDFDYKGHTHRASPDHPQYEIKSDKTDHIAAHRGEVLRRVRAKGGA" FT misc_feature 113140..113163 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 113173..113259 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS 113379..113939 FT /transl_table=11 FT /locus_tag="BPP1408" FT /product="conserved hypothetical protein" FT /note="Similar to Streptomyces coelicolor conserved FT hypothetical protein Sc10f4.37C SWALL:Q9F3M4 FT (EMBL:AL450350) (178 aa) fasta scores: E(): 7e-24, 44.25% FT id in 174 aa, and to Aeropyrum pernix hypothetical protein FT Ape2246 SWALL:Q9Y9P2 (EMBL:AP000064) (188 aa) fasta scores: FT E(): 8.2e-19, 45.16% id in 155 aa" FT /db_xref="InterPro:IPR014519" FT /db_xref="UniProtKB/TrEMBL:Q7WAG9" FT /protein_id="CAE36710.1" FT /translation="MRPPFHTIGHSNRSLEAFVALLEAAGIELVVDIRTVPRSRANPQF FT NQDALPGSLDGRGIAYEHLAALGGLRPRSRTVPREVNGYWDNDSFHNYADYALSQAFYA FT GLEHLVARGRAQRSAVMCSEAVWWRCHRRIVADHLLARGETVFHIMEAGRIDPASLTPG FT ALVRPDGMVVYPGADAAVRPPMP" FT CDS 114017..115063 FT /transl_table=11 FT /locus_tag="BPP1409" FT /product="conserved hypothetical protein" FT /note="Similar to Zymomonas mobilis hypothetical 36.5 kDa FT protein SWALL:Q9RH20 (EMBL:AF088897) (322 aa) fasta scores: FT E(): 2.1e-70, 57.84% id in 306 aa, and to Mycobacterium FT tuberculosis hypothetical protein Rv0799c or Mtcy07h7a.10 FT or Mtci429b.01 or Mt0820 SWALL:O07180 (EMBL:Z96797) (335 FT aa) fasta scores: E(): 6.9e-70, 56.56% id in 343 aa" FT /db_xref="InterPro:IPR006314" FT /db_xref="UniProtKB/TrEMBL:Q7WAG8" FT /protein_id="CAE36711.1" FT /translation="MPQNNPEPQAVVSPITRSAIFLVATVGADNEAADKVRALCGKLAD FT LARAVGKRVPAGNLSCVCGFSAAGWDRLFGQPRPAELHPFREFSAGERRAPATPGDLLL FT HIRAEQMDLCFELATHVMAQLGDAVTVVDEVHGFRYFDLRSMVGFVDGTENPTGREALD FT FTLVDDADPDFAGGSYVLVQKYLHDMDGWNALSVETQERIIGRTKLSDIELDEAVKPSN FT SHSALTTLEENGQEIKILRDNMPFGRPGSGEFGTYFIGYARSPAPIEQMLENMVVGRPP FT GNYDRLLDFSRAVTGGLFFAPSADLLEALAERDPQDTDGSRLDPAPAARAPHDGSLNIG FT SLKGNPQQ" FT CDS 115060..115863 FT /transl_table=11 FT /gene="linM18" FT /locus_tag="BPP1410" FT /product="bacteriocin" FT /note="Similar to Brevibacterium linens bacteriocin linocin FT M18 LinM18 SWALL:Q45296 (EMBL:X93588) (266 aa) fasta FT scores: E(): 9.5e-54, 56.6% id in 265 aa, and to FT Mycobacterium tuberculosis 29 kDa antigen cfp29 FT SWALL:O07812 (EMBL:Y12820) (265 aa) fasta scores: E(): FT 2e-59, 62.5% id in 264 aa" FT /db_xref="GOA:Q7WAG7" FT /db_xref="InterPro:IPR007544" FT /db_xref="UniProtKB/TrEMBL:Q7WAG7" FT /protein_id="CAE36712.1" FT /translation="MNNLYRDLAPISAAAWAQIEEEVARTFKRSVAGRRVVDVKDPGGF FT GLAAVGTGHLRGIAAPQKGVDAKLREVKALVELTVPFELQRDEIDAVERGANDADWQPA FT KDAATELAYAEDRAIFDGYKAAGIVGIREGSSNSRLELPTDAADYPAAVGRALEQLRLA FT GVDGPYSVLLGADAYTALSEGSDDGYPTIDHIKRIVSGDIIWAPALNGGCVLSTRGGDF FT ELHLGQDLSIGYQSHTDKVVRLYLRETLTFLMLTSEASVPVAPKG" FT CDS complement(115918..117216) FT /transl_table=11 FT /locus_tag="BPP1411" FT /product="putative membrane protein" FT /note="Similar to Agrobacterium tumefaciens putative FT transmembrane protein DctM SWALL:Q9F7C8 (EMBL:AF282677) FT (416 aa) fasta scores: E(): 6e-53, 40.67% id in 418 aa, and FT to Rhizobium meliloti hypothetical protein Ra0081 or FT Sma0151 SWALL:Q930W3 (EMBL:AE007202) (866 aa) fasta scores: FT E(): 7.9e-52, 41.62% id in 382 aa" FT /db_xref="GOA:Q7WAG6" FT /db_xref="InterPro:IPR004681" FT /db_xref="UniProtKB/TrEMBL:Q7WAG6" FT /protein_id="CAE36713.1" FT /translation="MDAVLILTVILGLFGLLLVLGIPIFAALGVPSILGIYLVGGASAL FT NVVPSVLHRGIASYSLICIPLFILMGETLARTSIGARLYTLFYTWLSRVRCSLAIASVG FT ASAIFGAMSGVSVAGAATIGRVAIPEMLKRRYDPGLAGGSVAAAGSLALLIPPSVGFVL FT YGEIASQSIGKLFSAAIVPGLLLSVLMMLYLYGLSRIKPSVAPDEAQKVSWRERWQALR FT DVWAAIVLIVAVLGTIYLGIATPTEASGLGAAGALLVALGYRELDRAKLREIVRSTIVT FT SSMILLIVAAALLFGHVLMRLQAPQMLIAWVAALAQPDWVILLLILVFLLIVGMFLDIV FT SIILITTPIVLPVITSLGLDPIWFGVVMIIMCEMAVITPPIGLNLYVIKGVAPEISLRD FT ITMGALPFVLVEALAVLILVLFPQLALWLPSHM" FT misc_feature complement(join(115936..116001,116065..116130, FT 116191..116256,116320..116385,116479..116544, FT 116626..116691,116731..116796,116860..116925, FT 116986..117051,117073..117123,117136..117201)) FT /note="11 probable transmembrane helices predicted for FT BPP1411 by TMHMM2.0 at aa 5-27, 31-48, 55-77, 97-119, FT 140-162, 175-197, 224-246, 277-299, 320-342, 362-384 and FT 405-427" FT misc_feature complement(117130..117216) FT /note="Signal peptide predicted for BPP1411 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.952) with cleavage site FT probability 0.644 between residues 29 and 30" FT CDS complement(117220..117741) FT /transl_table=11 FT /locus_tag="BPP1412" FT /product="putative membrane protein" FT /note="Similar to Klebsiella pneumoniae putative small FT integral C4-dicarboxylate membrane transport protein DctQ FT dctQ SWALL:Q9RN75 (EMBL:AF186091) (136 aa) fasta scores: FT E(): 1.3e-05, 26.89% id in 119 aa" FT /db_xref="InterPro:IPR007387" FT /db_xref="UniProtKB/TrEMBL:Q7WAG5" FT /protein_id="CAE36714.1" FT /translation="MKSLLDRLTRIGHGTNRAAVFIAQAALLLMMLLTVYSVIARYVLQ FT QPSVHAVEISIYLLLLVTWLSVGWTHLLERHVSMEMLSIRVRGRGKRLLNVFRELVVLV FT FCGFLLHAGVQIAATALARNYRSTSLLAFPMWIAYGLIAVGALLLAIAAACKLNHPDGN FT AAIAPPSPEA" FT misc_feature complement(join(117283..117348,117394..117459, FT 117523..117579,117625..117681)) FT /note="4 probable transmembrane helices predicted for FT BPP1412 by TMHMM2.0 at aa 20-39, 54-73, 94-116 and 131-153" FT misc_feature complement(117607..117741) FT /note="Signal peptide predicted for BPP1412 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.714) with cleavage site FT probability 0.340 between residues 45 and 46" FT CDS complement(117783..118790) FT /transl_table=11 FT /locus_tag="BPP1413" FT /product="putative extracellular solute-binding protein" FT /note="Similar to Rhizobium meliloti putative periplasmic FT binding protein R01699 or smc00271 SWALL:Q92PN7 FT (EMBL:AL591788) (325 aa) fasta scores: E(): 1.4e-16, 29.2% FT id in 315 aa, and to Pasteurella multocida hypothetical FT protein Pm1252 SWALL:Q9CLH9 (EMBL:AE006164) (328 aa) fasta FT scores: E(): 4.7e-18, 28.66% id in 314 aa" FT /db_xref="GOA:Q7WAG4" FT /db_xref="InterPro:IPR018389" FT /db_xref="UniProtKB/TrEMBL:Q7WAG4" FT /protein_id="CAE36715.1" FT /translation="MNKTWIAKLLPAVLLALSANAGAADKPIELTLSTYAPPSYEYMWK FT PLETFIAYVEKESQGRVKIKAFHSAQLFDGYEELPALSRGDIDITTVVSTYASGAMPVL FT NLFTMPFVFQDTAHLERAAKAGLLDVSIRGEMRDKYGIEVLGLAPIDPYQIYSRRAPVR FT TAADFKGKVWATTGAADARAIQLLGGSPTSMPSSELYLALDRGVVDGTPRPLITGLGRS FT LHEVVKHLSLATLAIDTSLLSMNKAKFDSLPPDIQDIIRRGAQVRDEEQFRQVYAYIEQ FT GVAKFEKNGVSVYTIEPAALQDMRAATQPAVQEWVAQEPAASRHLELLEKTRAN" FT misc_feature complement(117834..118697) FT /note="HMMPfam hit to PF03480, Bacterial extracellular FT solute-binding protein, family 7, score 6.8e-49" FT misc_feature complement(118722..118790) FT /note="Signal peptide predicted for BPP1413 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.987 between residues 23 and 24" FT CDS complement(118815..119441) FT /transl_table=11 FT /locus_tag="BPP1414" FT /product="putative isochorismatase" FT /note="Similar to Escherichia coli isochorismatase EntB or FT EntG or B0595 or Z0737 or Ecs0634 SWALL:ENTB_ECOLI FT (SWALL:P15048) (285 aa) fasta scores: E(): 2.2e-06, 30.15% FT id in 189 aa, and to Arthrobacter sp N-carbamoylsarcosine FT amidase SWALL:CSH_ARTSP (SWALL:P32400) (264 aa) fasta FT scores: E(): 1.8e-12, 31.86% id in 204 aa" FT /db_xref="GOA:Q7WAG3" FT /db_xref="HSSP:1ILW" FT /db_xref="InterPro:IPR000868" FT /db_xref="UniProtKB/TrEMBL:Q7WAG3" FT /protein_id="CAE36716.1" FT /translation="MLDLDNARGGFIGSHPFGRRPALVVIDFQRAFTDPDVSPLASDCA FT PAIAQANRLIQAMRGRGPVVFTVVGYDGNHGDGGCFHRKCPPLKDLVRGSAGCALDERL FT DYDAATDVLLHKTQASAFFGTPLAAMLAHAGCDAVLIAGCTTSGCVRASAVDAMQHGFP FT PFVAQDAVTDRSAAQHLSNLIDLKSKYAEVLPTDALLPLLLNPTA" FT misc_feature complement(118839..119387) FT /note="HMMPfam hit to PF00857, Isochorismatase family, FT score 4.1e-09" FT CDS complement(120016..120837) FT /transl_table=11 FT /locus_tag="BPP1415" FT /product="putative transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2117" FT /db_xref="GOA:Q7WAG2" FT /db_xref="InterPro:IPR014710" FT /db_xref="UniProtKB/TrEMBL:Q7WAG2" FT /protein_id="CAE36717.1" FT /translation="MILGGAPGHEYDLHYIPAPLRRRHHSQAMSQAANPTALPAWDPPA FT ILAQLRANTCFGHMAEPTLAAFAAIAQWRRLDHGELLAGRGTPAPGVVIILKGAIHTSS FT FSDDGHEFALSMLEFDGLWGVAAVLDGGGMLRDSRAYQQTDILLLPRAAFLDILDGDPG FT LYRYFVKLLCSRIRTAHAIIDELALRSLPQRLPRLLGALTAGRPGDDERGIAVAQTQDA FT LATLLGVSRHAVNRELRQLANQGLVGLGYGEIWVRDLERLKQLWHERGAQP" FT misc_feature complement(120349..120630) FT /note="HMMPfam hit to PF00027, Cyclic nucleotide-binding FT domain, score 0.042" FT CDS 120876..121847 FT /transl_table=11 FT /locus_tag="BPP1416" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2116" FT /db_xref="GOA:Q7WAG1" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7WAG1" FT /protein_id="CAE36718.1" FT /translation="MKIKSMLLAVLAVSMAGVSAAALSQGFPERALRVVVPYPPGGTTD FT VLVRLLQKPVADAAGQSVVVDNRPGGASVIGTSHVAQAAPDGYTVLGGDLSMLVNPSLM FT KDLPYDTLRDFRGVTMLARAPLVLLVHPSVPANTLDELIALAKARPGTLNFASGGYGTS FT THMAGEMFRRAAGIDVVHVPYQGVAPAMSALLGGQVQMYFGGTTTGLPHIQSGKLRALA FT VTGEAPSPLLPEVPTFVSRGIQGVNADTYWGVYAPARTPDAVIEKLNAYYTGALRDPAV FT QQRTRDLGLTLIGNSAAEHTAQMKTMIGDWGAFVKEADIRLE" FT misc_feature 120876..120947 FT /note="Signal peptide predicted for BPP1416 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.485 between residues 24 and 25" FT misc_feature 120894..120947 FT /note="1 probable transmembrane helix predicted for BPP1416 FT by TMHMM2.0 at aa 7-24" FT misc_feature 121014..121835 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 7.1e-93" FT CDS 121851..122705 FT /transl_table=11 FT /locus_tag="BPP1417" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2115" FT /db_xref="GOA:Q7WAG0" FT /db_xref="InterPro:IPR002509" FT /db_xref="UniProtKB/TrEMBL:Q7WAG0" FT /protein_id="CAE36719.1" FT /translation="MAAKQSLVCLTFDFDAISVWLARGMDSPTPVSRGEFCAVAADRVL FT DLLERLGLPSTWFIPGHTLASYPEHCRRVHEAGHEIGHHGWTHVAPNLMTREEELDGLV FT RANEAIRALTGRAARGYRSPSWDLSPHTLALLLEHGFDYDSSMMGHDYLPYPVRQGDSF FT PLDEPAVFGAPTRLIEVPVSWSLDDYPHFEFVRAGQSVIPGLMNANSVMDNWIEDFLYL FT KENFDWGVITYTFHPFVIGRGHRMRMLERLLRRLIDEGATFVRMEEAVDAYRQRQALAA FT GAA" FT misc_feature 121929..122384 FT /note="HMMPfam hit to PF01522, Polysaccharide deacetylase, FT score 2.1e-11" FT CDS 122724..123542 FT /transl_table=11 FT /locus_tag="BPP1418" FT /product="putative hydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2114" FT /db_xref="GOA:Q7WAF9" FT /db_xref="InterPro:IPR000073" FT /db_xref="UniProtKB/TrEMBL:Q7WAF9" FT /protein_id="CAE36720.1" FT /translation="MMQHYYERDGVRLSYYLDDYTDPWTQAPTLLLLHGAMANAQRFYS FT WVPGLSRDYRVVRADLRGHGLSDVPPADKPLDLQVLTEDILALLDHLGCERVHLAGNSA FT GGYVGQHLAMQHLQRIETLALFGSAPGLRNSQASTWLERVAEKGLRQFLADTIDDRFPP FT ELVGTPRCEQFLDALSDHDMAYIGRFVGYMAQQEWGDQLHRITCPTLVVIPGAGRIGAM FT DAYQPMRDHLKRAEILVYEGERHSICEYLPQRCVADLRSFLARHGGPAWP" FT misc_feature 122883..123512 FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold, FT score 1.5e-16" FT CDS 123562..125022 FT /transl_table=11 FT /locus_tag="BPP1419" FT /product="putative amidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2113" FT /db_xref="GOA:Q7WAF8" FT /db_xref="InterPro:IPR000120" FT /db_xref="UniProtKB/TrEMBL:Q7WAF8" FT /protein_id="CAE36721.1" FT /translation="MASVMNIEQYVQQDGLALSAQLRAGATDPQALMQCAITLARQRAE FT PLNALCYPDYDAALARAAAWRPTGVFGGLPFLLKDSGLACDRLPSSIGLALCKDMRFAA FT NATLVERFDAAGLLPFARTTVPALCMVPTTEALVNGGPARNPWAPQRSAGGSSGGAAIA FT VATGVVPLAHGSDGGGSIRIPASCCGVFGLKPSRGLVPLGPARGEAWGGMAGDGVLSRS FT VRDTAAALDAIAGMERGAPYAAPAPPAGGYLAALARPFERPLRIGVWQHAWDGIEVDPA FT CSATLAQAEALCRQLGHATEAIAAPPIDYQAFVRAHIGILCTHIALAVDARLAVLRRGL FT RDDDLEPAILDGYRRARGISATDYAGMIQALHAVGRAMAACMQGYDLLLSPTLTRPPVP FT LGEISMADDFVSFRQKAARYTTFLAVINASGQPAASVPLHIDGQGLPIGVQLIGALGRD FT DLVLRLAAQLERAAPWAGRFPPAAGAGA" FT misc_feature 123667..124947 FT /note="HMMPfam hit to PF01425, Amidase, score 1.1e-67" FT CDS 125025..125813 FT /transl_table=11 FT /locus_tag="BPP1420" FT /product="putative oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2112" FT /db_xref="GOA:Q7WAF7" FT /db_xref="HSSP:1GZ6" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7WAF7" FT /protein_id="CAE36722.1" FT /translation="MAGRTDCAPAAGRLAGRVALITGAAGGIGSAAALRFAAEGAALAL FT LDRRPDAIEQLAGRICGQGGQAIGVAADVTDDDSVRQAVRRAVEHFGRIDTLFNCAGGS FT VAGDTAVDKVDLALWNRTLRLDLDSTMLCCRHAVPAIVRAGGGAVVNMSSGAGLRGSFG FT GHAYTAAKGAVIALTRALAAEYAPHGVRVNAICAGRIRTERILRNLDAGAPAQAGAAQR FT YPCREGDPIDIAHIALFLASHESRMITGEAIAANGGYSAF" FT misc_feature 125067..125801 FT /note="HMMPfam hit to PF00106, short chain dehydrogenase, FT score 3.8e-72" FT misc_feature 125484..125570 FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT tRNA complement(125936..126011) FT /note="tRNA Ala anticodon CGC, Cove score 84.28" FT CDS complement(126099..127604) FT /transl_table=11 FT /locus_tag="BPP1421" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2111" FT /db_xref="InterPro:IPR010799" FT /db_xref="UniProtKB/TrEMBL:Q7WAF6" FT /protein_id="CAE36723.1" FT /translation="MHILVAGFQHETNTFAPSKAGYDNFLRGEGFPALVRGDDLLALRA FT VNIPAGGFLNAALADGHSVHPVLWAGASPSAHVTRDAFERIAGEIEAAARAGRYDAVYL FT DLHGAMVTEHHDDGEGELLRRLRDAVGPATPIVASLDLHANVTRAMLAHASALVAYHTY FT PHVDMADTGARAAALLQARAQAGKHWHGAARRLPFLIPINGMCTQLEPARGVYALLAEL FT ERSEPGIASLSCALGFPAADFPECGPVVWAHGPDRDAVERAVQTLADRIAGLEAQWAPD FT FLAPDEAIRQARQLAQGARRPVVIADTQDNPGAGGDANTTGMLRALIDADADNAAIGLM FT CDPQAVAQALAAGVGKCVRLRLGGQSGVAGDAPCEAEFIVEHQSDGKTRYDGPMMHGMA FT ADLGPTVCLRHRGVRVIVSSNKSQTLDRNLIRLGGIDPEDLAILVVKSSVHFRADFEPI FT AHAVLIAKAPGPMQADPADLPWTRLAPGMRTRPRGRPFVPARP" FT CDS complement(127646..128428) FT /transl_table=11 FT /locus_tag="BPP1422" FT /product="putative exodeoxyribonuclease III" FT /EC_number="3.1.11.2" FT /note="ortholog of Bordetella pertussis (BX470248) BP2110" FT /db_xref="GOA:Q7WAF5" FT /db_xref="HSSP:1AKO" FT /db_xref="InterPro:IPR005135" FT /db_xref="UniProtKB/TrEMBL:Q7WAF5" FT /protein_id="CAE36724.1" FT /translation="MKLATWNVNSLNVRLPQVLDWLAANPVDALCIQELKLTDDKFPLD FT AFTEAGYHAAWAGQKTYNGVAIISREPGFALVRNNPRYEDPQQRILAVTLPSPAGDVRV FT ICAYCPNGQSVDSDKYVYKLAWFDGLRDWLEEEMRTYPRLAILGDYNVAPADADVHNPE FT KWEGQVLVSEPERAAFRALLDLGLTDSFRLFEQPEKSFSWWDYRQFAFRRNAGLRIDHV FT LLSDALKPHCVACVIDKAPRANEQPSDHAPVIATLAFG" FT misc_feature complement(127658..128428) FT /note="HMMPfam hit to PF03372, FT Endonuclease/Exonuclease/phosphatase family, score 1.8e-41" FT misc_feature complement(127754..127789) FT /note="PS00728 AP endonucleases family 1 signature 3." FT CDS complement(128498..128944) FT /transl_table=11 FT /locus_tag="BPP1423" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2109" FT /db_xref="InterPro:IPR007418" FT /db_xref="UniProtKB/TrEMBL:Q7WAF4" FT /protein_id="CAE36725.1" FT /translation="MTYPILLALHLLAAFVFIGTVFFEVLILESVRRQVPREAMNAVER FT GIGNRARAIMPWVLLALFGAGIGMAWQHRGALEQPLASSFGLLLSLKIVLALSVLGHFA FT AAMRWRRRGQLRGRRSRRLHLSVFCHLVAIVLLAKGMYYIDALR" FT misc_feature complement(join(128510..128575,128636..128701, FT 128732..128797,128861..128926)) FT /note="4 probable transmembrane helices predicted for FT BPP1423 by TMHMM2.0 at aa 6-28, 49-71, 81-103 and 123-145" FT CDS complement(128941..130167) FT /transl_table=11 FT /locus_tag="BPP1424" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2108" FT /db_xref="InterPro:IPR010266" FT /db_xref="UniProtKB/TrEMBL:Q7WAF3" FT /protein_id="CAE36726.1" FT /translation="MAELLQIDEPAAGRAAPQWRAFLELGFRPLYLVGAAWGALSVALW FT IGAPQWLGGAMAGVIWHAHEMLWGFIGAIAVGFLLTAAATWTGVNPLRGAPLAALAALW FT LAARAAFLLPGMAAFWTGVACELLFFAWAAAALGRAIYRRGASRRNDGVPLLVLGLGAA FT DALYLLAARAGDYPLLLQRFNAGLLCMAVIALLIARRIIPFFAMRAIAGLQIPMHTRSG FT QWQLAAGLVAVAATLAQAGALTAVALAAAGLIALAQWLSWRPWATRGVPLLWILYTGYL FT GLAAGLLVAAASAAGGIARAAWPAHVIGMAGFGLLIIGMITRTALGHLGRPLRTDRLML FT ACYLLVIGAAALRLAALWPGPHTLAALHGATAAWVLAFVLYLWRFAPLLVRPRLRAPTA FT AAMPVRSRP" FT misc_feature complement(join(129010..129075,129097..129153, FT 129199..129264,129286..129351,129397..129489, FT 129550..129615,129646..129711,129775..129840, FT 129901..129966,130006..130071)) FT /note="10 probable transmembrane helices predicted for FT BPP1424 by TMHMM2.0 at aa 32-54, 67-89, 109-131, 152-174, FT 184-206, 226-257, 272-294, 301-323, 338-357 and 364-386" FT CDS complement(130160..130564) FT /transl_table=11 FT /locus_tag="BPP1425" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2107" FT /db_xref="UniProtKB/TrEMBL:Q7WAF2" FT /protein_id="CAE36727.1" FT /translation="MGAPDLCTEEDITQLVHQFYAEVRRDAELGPIFNTHVDDWDVHLA FT KLVDFWSSILRGTGRFRGTPMPRHVALPGLHAGLFERWLRLFRATAAAQPNQAMAEQAC FT LMAGRIAQSLWYGYQLHRSPDQAPTDLAHG" FT CDS 130724..131026 FT /transl_table=11 FT /locus_tag="BPP1426" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2106" FT /db_xref="GOA:Q7WAF1" FT /db_xref="InterPro:IPR007843" FT /db_xref="PDB:2OJL" FT /db_xref="UniProtKB/TrEMBL:Q7WAF1" FT /protein_id="CAE36728.1" FT /translation="MITPPDHPPRIAIQYCTQCQWLLRAAWMAQELLSTFGADLGEVAL FT VPGTGGVFRIHYNGAPLWDREVDGGFPEAKVLKQRVRDHLDPGRPLGHIDGRPKP" FT CDS complement(131023..131793) FT /transl_table=11 FT /locus_tag="BPP1427" FT /product="putative amino-acid ABC transporter, ATP-binding FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1362" FT /db_xref="GOA:Q7WAF0" FT /db_xref="HSSP:1B0U" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7WAF0" FT /protein_id="CAE36729.1" FT /translation="MIGLQGIDKSFGGNRVLHGVDVVIPEGSVTALIGPSGSGKSTLLR FT CVNLLEIPEAGVLRLGPETLAFDGRRPARDAVQRIRRQTGMVFQNFQLFPHQSVIDNVM FT EGLVTVQRWDKPRARARAMELLEKVGMTAKADAWPVTLSGGQQQRVAIARALASSPRVL FT LCDEPTSALDPSLAIEVVDVLRRLAGEGMTMLMATHDLRLAASIAQQVVFLEGGAVVEA FT GTPREVFAQSRDARTAAFVSTLTQGLPEEWSAPA" FT misc_feature complement(131143..131715) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 6.6e-64" FT misc_feature complement(131326..131370) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(131671..131694) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(131790..132470) FT /transl_table=11 FT /locus_tag="BPP1428" FT /product="putative amino-acid ABC transporter, permease FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1363" FT /db_xref="GOA:Q7WAE9" FT /db_xref="InterPro:IPR010065" FT /db_xref="UniProtKB/TrEMBL:Q7WAE9" FT /protein_id="CAE36730.1" FT /translation="MPAWLQLMLDSFWPLLHAGLMFTVPLTLLSFAAGLALAFVVALLR FT LFGPWPIVALMRFYVWLIRGTPLLVQLFVIFYGLPSVGIVLDPLPAALIGFTLNVGAYN FT SEVIRGAIESIPRGQWEAAYSLSMTRGQAMRRTVLPQAARVAVPPLANSFIALVKDTSL FT AAVLTVPEIFQAAQRIAAVTYEPLILYTEAALIYLVFSSALSSLQVHLEKRFGQHAVFA FT EQHR" FT misc_feature complement(131928..132140) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 2.3e-17" FT misc_feature complement(join(132234..132299,132339..132404)) FT /note="2 probable transmembrane helices predicted for FT BPP1428 by TMHMM2.0 at aa 22-44 and 57-79" FT misc_feature complement(132357..132470) FT /note="Signal peptide predicted for BPP1428 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.635) with cleavage site FT probability 0.379 between residues 38 and 39" FT CDS complement(132537..133325) FT /transl_table=11 FT /locus_tag="BPP1429" FT /product="putative amino-acid ABC transporter, periplasmic FT amino acid-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1364" FT /db_xref="GOA:Q7WAE8" FT /db_xref="HSSP:1HSL" FT /db_xref="InterPro:IPR018313" FT /db_xref="UniProtKB/TrEMBL:Q7WAE8" FT /protein_id="CAE36731.1" FT /translation="MNFSLRKLLLAGLVPLAMVGTAAQADDLAAIKAAGVIKIGTEGTY FT APFSYHDASNKLTGFDVEIGRAIAQKLGVKAEFVEGKWDGLIAGLDVKRYDAVINQVGI FT TDARKAKYDFSDPYISSQAALIVREDNQAIKSFADLKGRKSANTLTSNFGKLAQSYGAE FT VVPVQGFNEAIDLLMSGRVEATVNDNLSFLDFKKQKPNAKVKVAAYDKSKEFSESGVLI FT RKNNPELQAAINKALAELKADGTYRKISEQYFGADLSAAQ" FT misc_feature complement(132558..133217) FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3, score 1.9e-82" FT misc_feature complement(133110..133151) FT /note="PS01039 Bacterial extracellular solute-binding FT proteins, family 3 signature." FT misc_feature complement(133251..133325) FT /note="Signal peptide predicted for BPP1429 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.981 between residues 25 and 26" FT CDS complement(133568..135892) FT /transl_table=11 FT /locus_tag="BPP1430" FT /product="putative membrane transport ATPase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2722" FT /db_xref="GOA:Q7WAE7" FT /db_xref="InterPro:IPR008250" FT /db_xref="UniProtKB/TrEMBL:Q7WAE7" FT /protein_id="CAE36732.1" FT /translation="MPSTTRDLALDTPSGQRTDAHGHDHAGHDHAGHDHAHDHGIPACC FT GHGHGQPAAPAAAPAWQPGPGQQVTRVRIGQMDCPTEETLIRKKLASLPEVHELDFNLM FT QRVLTVLHADGALDRIDAAIRSLGMTPEPLAGDAPATPAGAAAPSRGWRLLAAGGVLAA FT LSELAHFTGQPVYVAAALALAAILACGLSTYRKGWIAVRNGNLNINALMSIAVTGAMLI FT GQWPEAAMVMFLFNVAELIEARALDRARHAVRGLLDLAPQTATARQPDGSWAEVPAARL FT RPGDLVRVRPGERIAADGTISEGHSAIDQSPITGESLPVEKGPDDDVYAGTVNASGSFD FT YRVTAAAGNTTLDRIIHAVEQAQGARAPTQRFIDRFSRIYTPAVVGLAVLVALAPPPLL FT LGHAWLDSVYRALALLIIACPCALVISTPVSVVSGLTAAARRGILIKGGVYLEEGRKLR FT WLALDKTGTLTQGKPVQTDLELLHDASAGGRPALRAAVSLAARSDHPVSRALAQADHAL FT DAPLDEVNGFAALPGRGVQGEIGGERFQLGNRRLMRELGVSTPDIEARIDAYEAAGKTA FT IALADGQRVLLLAAVADTLKASSAAAVADLHRLGVRTLMLTGDNTRAAQAVAAQAGIDE FT ARGDLLPQDKLDAVEAKLDPALRVGMVGDGINDAPALARADIGFAMGAAGTGTAIETAD FT VALMDDDLRKIGTFVRLSRATHRILTQNIVLALGIKAVFLVLAMAGQATLWMAVFADVG FT ASLLVVANGLRLLRAGRHQAS" FT misc_feature complement(join(133595..133660,133673..133738, FT 134594..134659,134690..134755,135317..135382)) FT /note="5 probable transmembrane helices predicted for FT BPP1430 by TMHMM2.0 at aa 170-192, 379-401, 411-433, FT 718-740 and 744-766" FT misc_feature complement(133838..134524) FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase, score 8.7e-27" FT misc_feature complement(133841..133909) FT /note="PS01229 Hypothetical cof family signature 2." FT misc_feature complement(134168..134191) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(134486..134506) FT /note="PS00154 E1-E2 ATPases phosphorylation site." FT misc_feature complement(134534..135205) FT /note="HMMPfam hit to PF00122, E1-E2 ATPase, score 3.1e-96" FT CDS 135975..136409 FT /transl_table=11 FT /locus_tag="BPP1431" FT /product="putative MerR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2723" FT /db_xref="GOA:Q7WAE6" FT /db_xref="HSSP:1Q06" FT /db_xref="InterPro:IPR015358" FT /db_xref="UniProtKB/TrEMBL:Q7WAE6" FT /protein_id="CAE36733.1" FT /translation="MKIGELARTAGTTVETVRYYEKEGLLPAPERGLNNYRSYGEAHVE FT RLRLIRNCRALDMTQDEIRTVLALADNHEAGCAPINQVFDEHIAHVDARIAELTQLKAQ FT LGELRQRCASARPDAEDCGILHGLSEMQVEERPERHTHLG" FT misc_feature 135984..136091 FT /note="HMMPfam hit to PF00376, Bacterial regulatory FT proteins, merR family, score 1.8e-11" FT CDS 136512..137096 FT /transl_table=11 FT /locus_tag="BPP1432" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2703" FT /db_xref="GOA:Q7WAE5" FT /db_xref="InterPro:IPR000415" FT /db_xref="UniProtKB/TrEMBL:Q7WAE5" FT /protein_id="CAE36734.1" FT /translation="MTVSPLHALTSRRSMKFLRAPAPKQDELEQILQAAMSAPDHGALR FT PWRFVLIRGEAIGRLADLAIEAVKRSGDKRMTPEKEKSVREWAAGVPLFIAVAQKISHD FT NTRIPEQEQLLATGAAVMNILNAAHMLGYGAFWSTGLGTYVEDVQDALGLDAMDYRFLG FT FVALGTPGCAVPPAQRPDFREFVSEWQGVTV" FT misc_feature 136521..136970 FT /note="HMMPfam hit to PF00881, Nitroreductase family, score FT 3.7e-14" FT CDS complement(137166..138674) FT /transl_table=11 FT /gene="argH" FT /locus_tag="BPP1433" FT /product="argininosuccinate lyase" FT /EC_number="4.3.2.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP2702" FT /db_xref="GOA:Q7WAE4" FT /db_xref="InterPro:IPR000362" FT /db_xref="UniProtKB/Swiss-Prot:Q7WAE4" FT /protein_id="CAE36735.1" FT /translation="MVQIIRQVGRRAVPWRRRGARRPYIIARIMANTSHSSQDQFANKA FT QAWSARFSEPVSDLVKRYTASVDFDKRMARHDIRGSLAHADMLAAQGIISAQDLADIQR FT GMQQILSEIDAGSFQWLLDLEDVHLNIEKRLVELVGDAGKRLHTGRSRNDQVATDIRLW FT LRDEIDTLVDLLRQLRHALATVALENAATIMPGFTHLQVAQPVTFGHHLLAYAEMFGRD FT AERLADCRRRVNRLPLGAAALAGTSYPIDRERVARTLGFDGVCRNSLDAVSDRDFGIEF FT CAAGALIMTHISRLSEELVLWMSPRVGFIDLADRFCTGSSIMPQKKNPDVPELARGKTG FT RVNGHLVALLTLMKGQPLAYNKDNQEDKEGLFDTADTLRDTLTIFADMAGGIKVKADNM FT RAAALQGFATATDLADYLVKRGLPFRDAHEIVAHAVRDCEQRGCDLADLSLADLQAYHP FT SIGEDIHQVLTLEGSVAARKHIGGTAPERVREEAQRVLAETAGA" FT misc_feature complement(137250..138527) FT /note="HMMPfam hit to PF00206, Lyase, score 5.1e-112" FT misc_feature complement(137691..137720) FT /note="PS00163 Fumarate lyases signature." FT CDS 138695..140041 FT /transl_table=11 FT /locus_tag="BPP1434" FT /product="putative membrane transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2701" FT /db_xref="GOA:Q7WAE3" FT /db_xref="InterPro:IPR006685" FT /db_xref="UniProtKB/TrEMBL:Q7WAE3" FT /protein_id="CAE36736.1" FT /translation="MLPKELENVVATLDNYVPDTAWGQTLVGIGVLVLTALFVQWVVAR FT VVLYFAHRLLVLSGREDWDRALSRRRAYQNFWYAVPFAVVSMGIELVPHAERAVTVVGR FT LSHAGAWICVFVAFSGVLSAWQDTYSATTRAQTRSIKGYIQIGKLILCAVGAVLVLSIL FT LDRSPLWMISGLGALSAVLLLVFKDTLLSLVASTQLTSNDMLRIGDWIEMPQANADGFV FT KDIALHTVKVQNWDNTVTTVPTYKLFSESYRNYRHMFESGGRRIKRTLRLDAASVRFMN FT EEEGGRLKRFVLLRDYLQAKEDALLEANRQLGELAEVPANRRRLTNIGTFRGYALAYLR FT QHPEVRQDMAMMVRMMEPQPNGIPIEIYCFTAITAWVEYERIQGDIFDHLLAILPELGL FT RLFQEPSGSDLGNLAGGMREAALHEFRREQVAAGEAPLALRGDGAAPVR" FT misc_feature join(138752..138820,138920..138973,139016..139069, FT 139118..139186,139199..139252) FT /note="5 probable transmembrane helices predicted for FT BPP1434 by TMHMM2.0 at aa 20-42, 76-93, 108-125, 142-164 FT and 169-186" FT misc_feature 139127..139900 FT /note="HMMPfam hit to PF00924, Mechanosensitive ion FT channel, score 4.6e-25" FT CDS 140080..141714 FT /transl_table=11 FT /locus_tag="BPP1435" FT /product="putative NAD synthetase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2700" FT /db_xref="GOA:Q7WAE2" FT /db_xref="InterPro:IPR014445" FT /db_xref="UniProtKB/TrEMBL:Q7WAE2" FT /protein_id="CAE36737.1" FT /translation="MSLARVGIAQINACVGDLAGNAARVLQAARQAAGQGADVLVTPEL FT VLTGYPPEDLLLRPRFIQEQQAVFERLCQDLAGLAGLHVVIGHVLARQDRLYNAATVVC FT EGRVLGSYCKRELPNYSVFDEQRYFSAHGEAFGFTVKGVRFGLNICEDIWLERAPRAAA FT ADGAQVLLVSNASPYNTGKQEERLSVARRSVQDTGCALIYANLVGGQDELVFDGASFAL FT DAQGRMSARLPDFTEGVNVLEVDARGTVRPVTEQAAVQPYGLEEQVWNALVLGVRDYLG FT KNGFPGAIIGLSGGIDSAVVLAVAVDAVGADNVRAVMMPSRYTADISLTDAADMARRLG FT VQYDVIAIGEVVDRFEAALAPQFAGLPVDATEENIQARARGTLLMALSNKTGRLVLTTG FT NKSEMTTGYCTLYGDMAGGFAVIKDVPKTLVYRLANWRNQRQPIIPERIITRPPSAELR FT PDQTDQDSLPPYDILDGIIERYMEHNASAADIVAAGFPREAVGQVVRLIRINEYKRRQA FT PPGPRITPRAFGRDWRYPVTNGFRETV" FT misc_feature 140086..140865 FT /note="HMMPfam hit to PF00795, Carbon-nitrogen hydrolase, FT score 5.2e-11" FT misc_feature 141034..141645 FT /note="HMMPfam hit to PF02540, NAD synthase, score 2e-76" FT CDS 141758..142096 FT /transl_table=11 FT /gene="glnB" FT /locus_tag="BPP1436" FT /product="nitrogen regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2699" FT /db_xref="GOA:Q7WAE1" FT /db_xref="HSSP:1HWU" FT /db_xref="InterPro:IPR017918" FT /db_xref="UniProtKB/TrEMBL:Q7WAE1" FT /protein_id="CAE36738.1" FT /translation="MKQVTAIIKPFKLDEVREALAEVGVSGLTVTEVKGFGRQKGHTEL FT YRGAEYVVDFLPKIRVEVVLADDMVDPAIEAIVKAARTGKIGDGKIFVTPVEQAIRIRT FT GESDEEAL" FT misc_feature 141761..142090 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00543, Nitrogen regulatory protein FT P-II, score 6.8e-58" FT misc_feature 141893..141910 FT /note="PS00496 P-II protein urydylation site." FT misc_feature 142004..142045 FT /note="PS00638 P-II protein C-terminal region signature." FT CDS complement(142121..142495) FT /transl_table=11 FT /locus_tag="BPP1437" FT /product="endonuclease" FT /note="ortholog of Bordetella pertussis (BX470248) BP2698" FT /db_xref="GOA:Q7WAE0" FT /db_xref="HSSP:1ENJ" FT /db_xref="InterPro:IPR004260" FT /db_xref="UniProtKB/TrEMBL:Q7WAE0" FT /protein_id="CAE36739.1" FT /translation="MTRINCVPVEELSGPHLVAEYRELPRVFALAHKAAARGALVQPAA FT YTLGKGHLLFFYTRLGYLARRHRALVEEMRRRGYRPAFAGVTREDFADIPAPFWNDWTP FT TEEALALNRARIAARGGGKA" FT misc_feature complement(142127..142495) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03013, Pyrimidine dimer DNA FT glycosylase, score 2.1e-22" FT CDS 142581..142961 FT /transl_table=11 FT /locus_tag="BPP1438" FT /product="putative heat shock protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2697" FT /db_xref="GOA:Q7WAD9" FT /db_xref="HSSP:1DM9" FT /db_xref="InterPro:IPR002942" FT /db_xref="UniProtKB/TrEMBL:Q7WAD9" FT /protein_id="CAE36740.1" FT /translation="MDKIRLDKWLWAARFYKTRSLAVQEIGKGRVQVNGQPAKPAREVA FT PGDVVCIRKEDPPIHVRVCAVSGVRGPAPVARQLYEETPESAAARERAAEMRRLAPEPA FT MDIVAGRPTKRDRRLIDKWRDA" FT misc_feature 142590..142730 FT /note="HMMPfam hit to PF01479, S4 domain, score 8e-13" FT CDS 143079..145016 FT /transl_table=11 FT /locus_tag="BPP1439" FT /product="putative phosphatase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2696" FT /db_xref="InterPro:IPR008557" FT /db_xref="UniProtKB/TrEMBL:Q7WAD8" FT /protein_id="CAE36741.1" FT /translation="MHEPTMSKRRLVLKMLGGAPMLPLGAVGAATLLAGCRAGADGAQA FT AARGAGPRGDFVTAAFTSMAAPSLDAPEKMAITTVESTLEVSFSDGGRQTFQLGYEPFF FT MTGDSVPDGQGATRVAGGYLDIHGRPIMDSSVPGKARQFFSDCPDGMSLLALPSARVPG FT VKGNTVFAVVQFEYASHNQKGESMYGLLPSPIAVLTLAQDPATGRLALVKYSPVDTAPA FT HGLWITCGASLSPWNTHLASEEYEPDATTARASAQFQGFSRNLYGDAAKANPYHYGHLP FT EVVVHPDGTGTIRKHYCLGRISHELIQVMPDQRTCLMGDDATNGGLFMFVADRKADLSA FT GTLYVAKWRQTSGEGPGAGTLGWINLGHARSADIEALADTLTAADIMDVRTADPGDPAF FT KAIRVNGKANWVRLAPGREQAAAFLETHCYAALAGGTMAFSKMEGTTVNARDRIAYSAM FT SRIETSMVDGTSPDLRVQGPEPGAVYALNLRGGQRDSAGTAIDSEWVPVDMAAVPALVG FT EKLAAPDALGNRHHADRISNPDNIKFSEKLRTLFIGEDSNGHVNNFLWAYNVDSGALSR FT ILSCPAGGESTGLQAVDEINGWTYITSNFQHAADWGGVHAVVRATLDPLVKANYRDGFG FT ASVGYITITP" FT misc_feature 143079..143165 FT /note="Signal peptide predicted for BPP1439 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.972) with cleavage site FT probability 0.408 between residues 29 and 30" FT misc_feature 143112..143180 FT /note="1 probable transmembrane helix predicted for BPP1439 FT by TMHMM2.0 at aa 12-34" FT CDS complement(145110..145655) FT /transl_table=11 FT /locus_tag="BPP1440" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP2695" FT /db_xref="UniProtKB/TrEMBL:Q7WAD7" FT /protein_id="CAE36742.1" FT /translation="MLPIVIVSGPPGSGKTTACGLLAQADPQGLHLPSDLFYGFPAHPI FT PPYRPQADAQNAAVIRAVCRSAASFAADGYRVYLDGIFGPWFLPLIAAQLQAARCPAAY FT ALLDIGLDEALARVEQRSGPGQASMVRTMHDAFRAAGSLAGHRVVTAGRPAAEIADEIA FT GRLQAGALALDLARWAPG" FT misc_feature complement(145608..145631) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(145730..146611) FT /transl_table=11 FT /locus_tag="BPP1441" FT /product="LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP2694" FT /db_xref="GOA:Q7WAD6" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WAD6" FT /protein_id="CAE36743.1" FT /translation="MSSIRFLRTFLAVAQHGTFSEAAEQVALTQAAVSFQMRALEAELG FT RELFDRGGRLAILNAAGRELVPEIKRLLDLYDHLKAPRNVPGELAGSVSVGAIVSCMGT FT LSKVVSQLKRDHPALDVRVFSGKASELAGKVEAGELDAALVVEAGRKMASTRWTPLYEE FT PLVVLAHPHAPGADAREVLAANPFLRFDRTQRTGRQIDRIVRRLGGGLNEFLELNAIET FT LVELVRQEVGVTLLPLLNGANWQASPQLRVLPLPAELGPAVRAIGMIERRDHARLAVTA FT EICAQCGALFGR" FT misc_feature complement(145736..146356) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 8.5e-29" FT misc_feature complement(146423..146602) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 5.8e-20" FT misc_feature complement(146468..146560) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(146546..146611) FT /note="Signal peptide predicted for BPP1441 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.716) with cleavage site FT probability 0.571 between residues 22 and 23" FT CDS 146719..148347 FT /transl_table=11 FT /locus_tag="BPP1442" FT /product="putative gamma-glutamyltranspeptidase" FT /note="ortholog of Bordetella pertussis (BX470248) BP2693" FT /db_xref="GOA:Q7WAD5" FT /db_xref="InterPro:IPR000101" FT /db_xref="UniProtKB/TrEMBL:Q7WAD5" FT /protein_id="CAE36744.1" FT /translation="MKAFNWVNPYPSTRIPVFARNVVSTSHPLAAQAGLRMLLKGGNAV FT DAAIAAAATIVLVEPVSCGLGGDCFAIVWDGRQLHGLNSSGVAPAAWNVEYFKRKYGTG FT PDGLAVQPKRGWDAVTVPGVVAGWAALHEKLGKLPFEQLFEPAIEIAERGYTVPPVVAH FT KWAAAAAELSEQPGYAQAFMPEGRAPRVGEHFRFPDAAYALRRIAASGGRDFYEGELAE FT RIAAFSKECGGAMTLDDLRNYRPEWVKPISRSYRGYELHEIPPNGQGIAALIALGICER FT FDLADMPVDSVQSQHLQIEAMKLAFSDLYRYVADPRSMEVTPQQMLDDAYLDSRARLID FT PDRATHFEAGRPHAGGTIYLTAADENGMMISFIQSNYMGFGSGVVVPGTGISLQNRGVG FT FSMNPASANVVEGGKRPFHTIIPGFLTRGGKPVMSFGVMGGDMQPQGHLQTVIRMLDYH FT QQPQAACCAPRWKVNRDFTLDIESTMNRATVEGLRNLGHRLKAVDDPYMDFGAGQFIWR FT MAESDNDLGYVAASDSRRDGQAVGF" FT misc_feature 146821..148332 FT /note="HMMPfam hit to PF01019, FT Gamma-glutamyltranspeptidase, score 1.2e-170" FT misc_feature 146902..146946 FT /note="PS00678 Trp-Asp (WD) repeats signature." FT CDS 148389..149906 FT /transl_table=11 FT /locus_tag="BPP1443" FT /product="ABC-transport protein, solute-binding component" FT /note="ortholog of Bordetella pertussis (BX470248) BP2692" FT /db_xref="GOA:Q7WAD4" FT /db_xref="InterPro:IPR000914" FT /db_xref="UniProtKB/TrEMBL:Q7WAD4" FT /protein_id="CAE36745.1" FT /translation="MTKTKSLSMMMGAAVLAGAGGAALAQDLRIGLQEDPDVLDPHRAR FT TYVGRSLNVSVLLSSLKLHDCASCGTNCSFSSMSTSLSHNEVKTMRTDVQFHDGSKFDA FT AAARANLERAMTLQDSMRKGELASVEKIEAPDPATLVLTLKRPDATLLAQLSDRAGMML FT SPKAFEGDAAAVGRKPVCSGPYKFVERVQNDRIVLQKFDQYYGAKDYHFDKLVFLPIPD FT TTVRLSNLRAGGLDILERMNPSDAPQVKNDASVQFMPVSGLGYQEVFFNTGNGKRAETN FT PFKDKRVRQALALSIDRAIINEVVGGGIFDPASQPFPPASPYHSDKFPVPKRDVERARA FT LLKQAGLQKVKAEFAFGNNTTTSAIAEMIQAMAAEAGFELSLRPTEYAAMLNEAQAGNF FT EMIMRGWSGRVDPDGNIYQFVTCKGALNDGRYCNAEVDKLLAEARTVPDQAKRKAIYDQ FT AQALLQADTHDIYLYYQPWPFVLGKNVRGFKPYPDGMVRLKGVTLAK" FT misc_feature 148389..148463 FT /note="Signal peptide predicted for BPP1443 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.995 between residues 25 and 26" FT misc_feature 148389..149897 FT /note="HMMPfam hit to PF00496, Bacterial extracellular FT solute-binding proteins, family 5, score 1.5e-31" FT CDS 149982..150926 FT /transl_table=11 FT /locus_tag="BPP1444" FT /product="ABC-transport protein, inner membrane component" FT /note="ortholog of Bordetella pertussis (BX470248) BP2691" FT /db_xref="GOA:Q7WAD3" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7WAD3" FT /protein_id="CAE36746.1" FT /translation="MFKLILRRVVVAIPTLILVSMIVFMLQKILPGDPVLTLAGEERDP FT AVLDYLREKYRLNDPLPVQYGAWVAQVLQGDLGKSMRTDVPVLTLIAQKLPVTLQLAVM FT AMAFALLVGIPLGIVAAVRKGTAVEMGANMAALSGMSIPNFWLGIILIMVVSVQWKLLP FT ASGYVSPAEDFWLSIKTMLMPALALSTAIAAYLMRHTRSAMLEALSADYVRTARAKGVA FT PRKVVLRHALRNALMPIVTLVTLLFGELLAGAVLTEQVFTIPGFGKLIVDAVFNRDYAV FT VQGVVLCVAVGFIVMNLLADILYILVNPRLRHA" FT misc_feature 149982..150056 FT /note="Signal peptide predicted for BPP1444 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.821) with cleavage site FT probability 0.559 between residues 25 and 26" FT misc_feature join(149994..150062,150279..150347,150405..150458, FT 150501..150569,150681..150749,150834..150902) FT /note="6 probable transmembrane helices predicted for FT BPP1444 by TMHMM2.0 at aa 5-27, 100-122, 142-159, 174-196, FT 234-256 and 285-307" FT misc_feature 150591..150806 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 3.8e-07" FT misc_feature 150594..150680 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS 150923..151798 FT /transl_table=11 FT /locus_tag="BPP1445" FT /product="probable ABC-transport protein, inner membrane FT component" FT /note="ortholog of Bordetella pertussis (BX470248) BP2690" FT /db_xref="GOA:Q7WAD2" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7WAD2" FT /protein_id="CAE36747.1" FT /translation="MSAPIASAGMAAPRRANRSWGKFRRNRIAMLGALIVLAFVVLALL FT APWVASHDPFQTSFMTIRKAPSAAFWMGTDELGRDIFSRMVYGARASLMAGMVSVLIAL FT AVGVPFGLAAGYFGGWTDSVISRATEALLAIPFLILAIALAAFLGPSLTNAMIAIGVSA FT APKFIRLTRGQVLAVKNEDYVQSARALGASDLRIIGRHVFPNVMPPLIVQATITIATAI FT IAEASLSFLGLGLQPPNPSWGSMLNTAKNFMTQAPWMSIFPGSAIFLVVLGFNLLGDGL FT RDALDPRQEK" FT misc_feature 150923..151051 FT /note="Signal peptide predicted for BPP1445 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.988) with cleavage site FT probability 0.824 between residues 43 and 44" FT misc_feature join(151004..151072,151208..151276,151313..151381, FT 151559..151627,151688..151756) FT /note="5 probable transmembrane helices predicted for FT BPP1445 by TMHMM2.0 at aa 28-50, 96-118, 131-153, 213-235 FT and 256-278" FT misc_feature 151163..151249 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT misc_feature 151445..151675 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 1.3e-10" FT misc_feature 151448..151534 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp. sign." FT CDS join(151801..153228,153227..153658) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1446" FT /product="probable ATP-binding ABC transporter protein FT (Pseudogene)" FT /note="Similar to Ralstonia solanacearum probable FT ATP-binding ABC transporter protein Rsc1379 or Rs04662 FT SWALL:Q8XZL6 (EMBL:AL646064) (627 aa) fasta scores: E(): FT 3.8e-154, 73.13% id in 618 aa, and to Salmonella FT typhimurium putative ATPase components of ABC-type FT transport system, contain duplicated atpase domain ylia or FT stm0848 SWALL:Q8ZQM4 (EMBL:AE008735) (623 aa) fasta scores: FT E(): 9.2e-135, 65.03% id in 612 aa" FT /db_xref="PSEUDO:CAE36748.1" FT misc_feature 151906..152517 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 6.3e-56" FT misc_feature 151927..151950 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 152287..152331 FT /note="PS00211 ABC transporters family signature." FT misc_feature join(152845..153228,153227..153415) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 2.4e-58" FT misc_feature 152866..152889 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature join(153187..153228,153227..153229) FT /note="PS00211 ABC transporters family signature." FT CDS complement(153661..154305) FT /transl_table=11 FT /locus_tag="BPP1447" FT /product="LysE-family efflux protein" FT /note="Similar to Caulobacter crescentus efflux protein, FT LysE family Cc0456 SWALL:Q9AAY6 (EMBL:AE005719) (208 aa) FT fasta scores: E(): 6.7e-38, 56.54% id in 214 aa, and to FT Zymomonas mobilis hypothetical 17.5 kDa protein Zm10orf7 FT SWALL:Q9XBR8 (EMBL:AF157493) (158 aa) fasta scores: E(): FT 1.1e-22, 49.06% id in 161 aa" FT /db_xref="GOA:Q7WAD1" FT /db_xref="InterPro:IPR001123" FT /db_xref="UniProtKB/TrEMBL:Q7WAD1" FT /protein_id="CAE36749.1" FT /translation="MTPLAALLAFTVAATLLTITPGLDTALVLRTAAIDGPRRALLAGL FT GVCAGCLAWGVAAALGLGALLAASSLAYDALRIAGAIYLCWLGARLLARSLRRRAGDAA FT PGMLPAAPAGGGALQWFWRGCLTNMLNPKVGVFYVTFLPQFIPAGVDVLAFSLLLAALH FT AALGLLWFAALVAATRPLSRWLARPSVARGLDRLSAGVFIAFGLKLALERR" FT misc_feature complement(153751..154098) FT /note="HMMPfam hit to PF01810, LysE type translocator, FT score 4.7e-05" FT misc_feature complement(join(153784..153849,153880..153945, FT 154030..154080,154120..154185,154225..154290)) FT /note="5 probable transmembrane helices predicted for FT BPP1447 by TMHMM2.0 at aa 15-37, 50-72, 85-102, 130-152 and FT 162-184" FT CDS 154397..154933 FT /transl_table=11 FT /locus_tag="BPP1448" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein Rsc0785 or Rs05053 SWALL:Q8Y1A5 (EMBL:AL646061) FT (182 aa) fasta scores: E(): 1.5e-37, 55.23% id in 172 aa, FT and to Yersinia pestis hypothetical protein Ypo1065 FT SWALL:Q8ZH46 (EMBL:AJ414146) (182 aa) fasta scores: E(): FT 1.1e-30, 46.06% id in 178 aa" FT /db_xref="InterPro:IPR009822" FT /db_xref="UniProtKB/TrEMBL:Q7WAD0" FT /protein_id="CAE36750.1" FT /translation="MALRATIYKADLHVADTDRHYYASHGLTIARHPSETDERMMVRVL FT AYALHADEQLAFTKGLSDTDEPDLWRKDLTGDIELWVEVGQPDERRILKACGRAAEVVV FT YCYGGHASQVWWDGVRGKLERARNLRVVCLPAAQTEALAQLARRTMQVHVNISDGAAFV FT STDEGQVQVEPQSWR" FT CDS complement(join(155067..155279,155281..156258)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1449" FT /product="putative membrane protein (Pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0980" FT /db_xref="PSEUDO:CAE36751.1" FT misc_feature complement(join(155092..155157,155170..155235, FT 155272..155337,155350..155415,155443..155508, FT 155539..155604,155689..155754,155770..155835, FT 155893..155943,155956..156006,156043..156108, FT 156139..156195)) FT /note="12 probable transmembrane helices predicted for FT BPP1449 by TMHMM2.0 at aa 21-40, 50-72, 84-101, 105-122, FT 141-163, 168-190, 218-240, 250-272, 281-303, 307-329, FT 341-363 and 367-389" FT variation complement(155280) FT /note="frameshift, (A) in parapertussis and pertussis; no FT frameshift, (-) in bronchiseptica" FT CDS complement(156325..156897) FT /transl_table=11 FT /locus_tag="BPP1450" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0981" FT /db_xref="GOA:Q7WAC9" FT /db_xref="InterPro:IPR007440" FT /db_xref="UniProtKB/Swiss-Prot:Q7WAC9" FT /protein_id="CAE36752.1" FT /translation="MTTPIPLARGWLPAAPSTLDPLRKYWLFRPGALTAGLRQLGHVRL FT RVLAEYPTGAPRDEADGMRIAAQSPVWVREVLMSIDGVDSVVARSLTPLRASHGVWQGM FT RRLLTRPLADMLYHDPGIHRSVFVCRRLAAGVPFHATAIARAPAGGPEPALWARRSAFW FT RAGQPLLVAECFLPAFWSLARAPVAPR" FT CDS 156957..157688 FT /transl_table=11 FT /locus_tag="BPP1451" FT /product="putative RNA pseudouridylate synthase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0982" FT /db_xref="GOA:Q7WAC8" FT /db_xref="HSSP:1VIO" FT /db_xref="InterPro:IPR006145" FT /db_xref="UniProtKB/TrEMBL:Q7WAC8" FT /protein_id="CAE36753.1" FT /translation="MEKVRISKLMSERGLCSRREADSYIERGWVRVDGVVVSELGARAF FT PDQAITLERAAAARQTARVTILLHKPVGYVSGQAEKGYTPAVALIDARSRHAGDRAPLR FT FERGQLQGLAVAGRLDIDSQGLLVLTQDGRIAKKLIGEDSEVDKEYLVRVQGRLSEAGL FT ALLNHGLSLDGKPLRPAQVRWQNADQLRFVLREGKKRQIRRMCELVGLRVVGLKRVRIG FT RVSLGDLPVGQWRYLRADERF" FT misc_feature 156966..157106 FT /note="HMMPfam hit to PF01479, S4 domain, score 0.00021" FT misc_feature 157146..157580 FT /note="HMMPfam hit to PF00849, RNA pseudouridylate FT synthase, score 9.2e-08" FT CDS complement(157740..158657) FT /transl_table=11 FT /locus_tag="BPP1452" FT /product="LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0983" FT /db_xref="GOA:Q7WAC7" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7WAC7" FT /protein_id="CAE36754.1" FT /translation="MELFVEVARTLSFSRAAENLAIPKSTLSRQVAELERSVGLRLLSR FT TTRRVELTEAGQLYFERCQRIVAEARIAHEELQNLVETPSGPLRVNMPADFGTDFLSEA FT FTEFSRRYPEVTFYLDLASPEHAERVFQTCDVSIEIGDLPDSTHIARLLGVLPAHLYAS FT PDYLARHGEPQHPDDLPRHECIQFRAGTGRVTRWPLNSGERHVEITPGNRFSVNSVSMV FT RNLATLGAGIAILAPMGNVREDIESGRLKRILPDWLAGPFPVYAVTDTRMLPAKTRIFV FT EFLMERLSNKTLAGQNNPAFLNLR" FT misc_feature complement(157791..158417) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 4.7e-39" FT misc_feature complement(158487..158657) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 1.3e-18" FT misc_feature complement(158532..158624) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature complement(158592..158639) FT /note="PS00063 Aldo/keto reductase family putative active FT site signature." FT CDS 158908..160098 FT /transl_table=11 FT /gene="acrA" FT /gene_synonym="mtcA" FT /gene_synonym="lir" FT /locus_tag="BPP1453" FT /product="acriflavine resistance protein a precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP0984" FT /db_xref="GOA:Q7WAC6" FT /db_xref="InterPro:IPR006143" FT /db_xref="UniProtKB/TrEMBL:Q7WAC6" FT /protein_id="CAE36755.1" FT /translation="MKNNYLVGRGIAALSLAALTLTLAACGKEQQAAQQGGQPQVGVVT FT LKTQSVALFSELPGRTAAYRIAEVCPQVSGIVQKRLFTEGGEVAAGQQLYQIDPALYQA FT EVDSRRAALARVQAQLKTATLLVQRYKPLVDTRAVSRQAYDDAVAARDQASADVLAAKA FT ALDTARINLVYTKVLAPIGGIIGRSNVTEGALVTANQSAAVAAVQQIDPIYVDVTQSSV FT QLLRLKSALDSGLLQREAGEQSARVTLTLEDGTQYDQDGKLQFSEVTVDPGTGSVLLRA FT VFPNPQRKLLPGMFVRARLAEGVASEGLLVPQRGVTRNQRGLPTALVVNVENKVELRTL FT KTDRAIGDQWLVSSGLAAGDRVIVEGLQSVRPGAEVKAAEWSPPASKAAAQPAAAK" FT misc_feature 158908..158988 FT /note="Signal peptide predicted for BPP1453 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.987) with cleavage site FT probability 0.681 between residues 32 and 33" FT misc_feature 158953..158985 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 159100..159999 FT /note="HMMPfam hit to PF00529, HlyD family secretion FT protein, score 1.3e-68" FT CDS 160111..163290 FT /transl_table=11 FT /gene="acrB" FT /gene_synonym="acrE" FT /locus_tag="BPP1454" FT /product="acriflavine resistance protein B" FT /note="ortholog of Bordetella pertussis (BX470248) BP0985" FT /db_xref="GOA:Q7WAC5" FT /db_xref="HSSP:1IWG" FT /db_xref="InterPro:IPR004764" FT /db_xref="UniProtKB/TrEMBL:Q7WAC5" FT /protein_id="CAE36756.1" FT /translation="MTKFFIDRPVFAWVIAIVLMMAGALSILSLPVAQYPNIAPPAISI FT NVTYPGASAQTVQDTVVQVIEQQMNGIDNLQYISSESNSDGSMSITLTFSQGTNPDTAQ FT VQVQNKLAVAQPLLPLEVQQQGIRVTKATKNFLIVAGFVSTDGTMDKSDLADYVASYIQ FT DPISRTPGVGDFQLFGAPYAMRIWISPEKLVNFGLTASDVTTAIREQNVQVSSGQLGGQ FT PAVRGQQLNATVIGPSRLQTPEAFGRILLKVNSDGSQVRLKDVASIELGAQTYAIDSYY FT NGKPASGLAIKLASGANALDTAQAVRETINGLKPYFPPGMDVVYPYDTTPFVSLSIEGV FT VKTLFEAVLLVFLVMYLFLQNVRATLIPTLAVPVVLLGTFGVLAAFGYSINTLTMFGMV FT LAIGLLVDDAIVVVENVERVMAEEGLSPRQATRKSMSQITGALIGIAMVLAVVFVPMAF FT FGGSTGVIYRQFSITIVSSMVLSVVVAIVFTPALCATMLKPIPKGHHGSKKGFFGRFNR FT TFERSSQAYANNVARSMGRTKRLLLIYVVILLGMAWMFMRIPTAFLPDEDQGILFAQVQ FT APAGATSERTQATIDAAVKYLLEDEKESVASVFAVNGFSFGGRGQNAAILFIKLRDWNE FT RKGAEHRAAAVAARANAKFRAELRDAQAAVFVPPAVMELGNATGFDFQLQDRAGVGHEK FT LLAARNQLLQEAGASPMLVAVRPNGIEDAPQYQLDIDREKARALGVSITEINNTLATAW FT GSSYVNDFIDRGRVKKVFVQGEASSRMLPQDLDKWYVRNNAGDMVPFSAFSSAQWTFGP FT QKLNRYNGVPSYNIQGQAAPGYSSGDAMAEMERLADKLPLGIGYDWTGLSFEERLSGAQ FT APALYAISLIVVFLCLAALYESWSIPTAVMLVVPLGVVGALLATLTRGLSNDVYFQVGL FT LTTIGLAAKNAILIVEFAKEHYEEGASLTEAAVHAARQRLRPILMTSLAFILGVVPLAI FT STGAGSGSQNAIGTGVIGGMLTGTFLAIFFVPLFFVLTLRLFKVKRASENREDDDPHGG FT AQPATHGGQPQ" FT misc_feature 160111..160212 FT /note="Signal peptide predicted for BPP1454 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.983) with cleavage site FT probability 0.738 between residues 34 and 35" FT misc_feature 160111..163194 FT /note="HMMPfam hit to PF00873, AcrB/AcrD/AcrF family, score FT 0" FT misc_feature join(160147..160215,161119..161187,161206..161274, FT 161284..161352,161422..161490,161518..161586, FT 161728..161796,162715..162783,162802..162870, FT 162883..162951,163024..163092,163120..163188) FT /note="12 probable transmembrane helices predicted for FT BPP1454 by TMHMM2.0 at aa 13-35, 337-359, 366-388, 392-414, FT 438-460, 470-492, 540-562, 869-891, 898-920, 925-947, FT 972-994 and 1004-1026" FT misc_feature 161629..161652 FT /note="PS00242 Integrins alpha chain signature." FT CDS 163287..164753 FT /transl_table=11 FT /gene="cusC" FT /gene_synonym="ibeB" FT /locus_tag="BPP1455" FT /product="probable outer membrane lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0986" FT /db_xref="GOA:Q7WAC4" FT /db_xref="InterPro:IPR010131" FT /db_xref="UniProtKB/TrEMBL:Q7WAC4" FT /protein_id="CAE36757.1" FT /translation="MKPAVMRTLLSLAVATALAGCSLAPTYERPQAPVDAAYPSGPAYG FT APGQAAAGAPAAADVGWRDFFGDPLLQELLALSLANNRDLRVAALNVEAARAQYRIQRA FT DLAPSVGVGGTGSVQRTPADLNPSGQAGISRSYQVGASLSTWELDLFGRIRSLSEQALQ FT LYLAQDETRLATQLTLVAETANAYLTLRADQELLALTRQTLVAQQESYKLTRQSYDLGV FT ATELDLSQAEISLRTAERNLSQYTRMAAQDRNALVLLVGQPLPAGIGAQLDQAVALPDG FT VVLADLPAGLPSDLLARRPDIRAAEHQLQAANASIGAARVAFFPRISLTGSAGTASASL FT GGLFDAGSGAWSFAPQISVPIFAGGALRASLDLAKIQKDIGIARYEQAIQSGFREVSDA FT LAGRGTLQEQIRSQELLVQANQRAYDLSQQRYQQGIDNYLSVLDSQRSLYTAQQTLVET FT RLARLSNLIQLYKALGGGWSERTVAAAQAG" FT misc_feature 163287..163358 FT /note="Signal peptide predicted for BPP1455 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.995) with cleavage site FT probability 0.604 between residues 24 and 25" FT misc_feature 163317..163349 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 163497..164102 FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein, score 2.1e-44" FT misc_feature 164148..164741 FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein, score 3.9e-54" FT CDS complement(164823..165074) FT /transl_table=11 FT /locus_tag="BPP1456" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0987" FT /db_xref="GOA:Q7WAC3" FT /db_xref="InterPro:IPR007341" FT /db_xref="UniProtKB/TrEMBL:Q7WAC3" FT /protein_id="CAE36758.1" FT /translation="MSIIIMIIVGFVVGLIARAIMPGDQNMGYIMTTILGIIGSVVAGF FT LGQQLGWYAPGEPAGWIGSVVGAIIVLFVVGLVAKKRA" FT misc_feature complement(join(164838..164894,164925..164990, FT 165012..165062)) FT /note="3 probable transmembrane helices predicted for FT BPP1456 by TMHMM2.0 at aa 4-21, 28-50 and 60-79" FT CDS complement(165220..165870) FT /transl_table=11 FT /locus_tag="BPP1457" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0988" FT /db_xref="GOA:Q7WAC2" FT /db_xref="HSSP:1ON4" FT /db_xref="InterPro:IPR012335" FT /db_xref="UniProtKB/TrEMBL:Q7WAC2" FT /protein_id="CAE36759.1" FT /translation="MRAPHRRLAVSTMYSPLSGRAWRGLLLAMLMLLAACSERSADWSL FT YNVKGHLPDLKFSLPGAHGKTVSSDDLKGKTVLLFFGYASCPDVCPTTMAQLTAVLQQL FT GEQARDVRILFVSVDPHRDTPDILQAYVNAFNNNAIGVTGNEKQIADLARRYRLAYQIE FT KPKPGDDADIYDVTHSRGVYIFDNQGKARLLASDTDTIDTMVKDLRQLIAQTQ" FT misc_feature complement(165274..165798) FT /note="HMMPfam hit to PF02630, SCO1/SenC, score 6.2e-26" FT misc_feature complement(165748..165870) FT /note="Signal peptide predicted for BPP1457 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.981) with cleavage site FT probability 0.737 between residues 41 and 42" FT misc_feature complement(165763..165795) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(166005..168119) FT /transl_table=11 FT /gene="prlC" FT /gene_synonym="opdA" FT /locus_tag="BPP1458" FT /product="oligopeptidase A" FT /EC_number="3.4.24.70" FT /note="ortholog of Bordetella pertussis (BX470248) BP0989" FT /db_xref="GOA:Q7WAC1" FT /db_xref="InterPro:IPR001567" FT /db_xref="UniProtKB/TrEMBL:Q7WAC1" FT /protein_id="CAE36760.1" FT /translation="MACAPFGPRPLVHGIPKPMTQNPLLAPVADLVDYAAVKPEHIVPA FT VQALLDIARAAVEHAADPALPATWDAVVAPLDSASERLWRAWSVAGHLNAVVNTPVLRE FT AYNAALPLVTEFSTWVGLHEGLYRQYQRLQAAEDFAAWPPVRRRVVELALRDFRLSGVE FT LQGAARERYAEISDREAQASQKFSENVLDAIDAWSLLVDDQARLDGIPADVLAAARKAA FT EDDGATGWKLTLKMPCYLPVMQYARDRALRETLYRAYGTVASEHGDAAYDNSPLIEELL FT QLRADEAGLLQYPTFAALRLQTRMARDATEVVDFLRDLARRAKPYAERDLAELQAFAAG FT ELGLAELQPWDVPFAAERLRESRYAYSEDEIKQYFTEPRVLAGLFEVIETLFDVRLREV FT PVSSWHADVRGVRVESPAGATLGHLYLDLYARAGKQSGAWVDSERSRRSVQGDLQTPVA FT YLTCNFSRPNGDKAALLTHDDVITLFHETGHALHALLSEVDEPGAAAFASVEWDAIELP FT SQFMENFCWEWSVVQKLSAHVETGQPLPRDLYDRLVAARNFQSGMQTVRQIEFALFDMM FT LHDRPQGAPIADVLALLQQVRQEVAVLFPPAWHRLPHSFSHLFAGGYGAGYYSYKWAEV FT LSADAYEAFEEAARQGEPAATTLDGATGARFRKEILAVGGARPAADSFRAFRGREPRID FT ALLRHSGMQA" FT misc_feature complement(166014..167396) FT /note="HMMPfam hit to PF01432, Peptidase family M3, score FT 3.4e-154" FT CDS complement(168195..169046) FT /transl_table=11 FT /gene="folD" FT /gene_synonym="ads" FT /locus_tag="BPP1459" FT /product="FolD bifunctional protein [includes: FT methylenetetrahydrofolate dehydrogenase and FT methylenetetrahydrofolate cyclohydrolase]" FT /EC_number="1.5.1.5" FT /note="ortholog of Bordetella pertussis (BX470248) BP0990" FT /db_xref="GOA:Q7WAC0" FT /db_xref="HSSP:1A4I" FT /db_xref="InterPro:IPR000672" FT /db_xref="UniProtKB/Swiss-Prot:Q7WAC0" FT /protein_id="CAE36761.1" FT /translation="MTARIIDGAALSQRIREEVAQRVQALTAKGVRPGLAVVLVGDDPA FT SQVYVRNKVAACEKAGLHSVKEQYPADLTEAQLLERIDALNRDPSIHGILVQLPLPRHM FT DAHKVIEAIAAEKDVDGFHISNAGLLMTGQPLFRPCTPYGVMKMLESEGVALRGAEAVI FT VGASNIVGKPMAMLLLQAGATITICNSKTRDLGAQTRRADVLVVATGKPGMIDGSMIKP FT GAVVIDVGINRGADGKLCGDVDMASAREVAGAISPVPGGVGPMTIAMLLVNTVEAAERA FT AA" FT misc_feature complement(168201..168683) FT /note="HMMPfam hit to PF02882, Tetrahydrofolate FT dehydrogenase/cyclohydrolase, NAD(P)-binding domain, score FT 3.5e-92" FT misc_feature complement(168246..168272) FT /note="PS00767 Tetrahydrofolate FT dehydrogenase/cyclohydrolase signature 2." FT misc_feature complement(168687..169046) FT /note="HMMPfam hit to PF00763, Tetrahydrofolate FT dehydrogenase/cyclohydrolase, catalytic domain, score FT 5.5e-67" FT misc_feature complement(168747..168824) FT /note="PS00766 Tetrahydrofolate FT dehydrogenase/cyclohydrolase signature 1." FT CDS complement(169043..169669) FT /transl_table=11 FT /locus_tag="BPP1460" FT /product="two-component response regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0991" FT /db_xref="GOA:Q7WAB9" FT /db_xref="HSSP:1DBW" FT /db_xref="InterPro:IPR000792" FT /db_xref="UniProtKB/TrEMBL:Q7WAB9" FT /protein_id="CAE36762.1" FT /translation="MNTPHLSSTVFIVDDDEAVRDSLRWLLEANGYRVRAYASGENFLD FT EYDASQIGVLIADVRMPGMSGLELQEQLIARNAPLPIVFITGHGDVPMAVSTMKKGAVD FT FLEKPFNESDLREIVARMLEQAVQRISKFQAQKDHEAMLARLTAREQQVLERIVAGRLN FT KQIADDLGISIKTVEAHRANIMEKLEVTTVADLMKVALAKPEAHA" FT misc_feature complement(169049..169243) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00196, Bacterial regulatory FT proteins, luxR family, score 8.9e-20" FT misc_feature complement(169109..169192) FT /note="PS00622 Bacterial regulatory proteins, luxR family FT signature." FT misc_feature complement(169289..169648) FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain, score 6.6e-40" FT CDS complement(169666..171420) FT /transl_table=11 FT /locus_tag="BPP1461" FT /product="tw-component sensor kinase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0992" FT /db_xref="GOA:Q7WAB8" FT /db_xref="InterPro:IPR013767" FT /db_xref="UniProtKB/TrEMBL:Q7WAB8" FT /protein_id="CAE36763.1" FT /translation="MSSPPKSNIPMSFRDHARARRRGVYWLTPALVLVLYICVMGVFFW FT LQRIHDDSVMFVTIDQELRQQRLIWVVLALSCVIVISLLMLWRYTRFRSEAEAALIAET FT GFRRAMENSMSTGMRVLDMEGRIAYVNPAFCRMIGWNEADLIGRSPPFPYWVPGRHEQH FT QHTLEVLTSGKTPSSGLEVEAQRRDGSRFTARMYVSPLLDPNGDQIGWMTSMTDITEPK FT RIREALTAAHERFMTVLEGLDDAISVTADTHDGLELLFANRTYRRVFGAQTGGHNELLA FT GRRGRFTDESVEVLAPSVQRWFEVHHRMLAWTDGRRVRMQVARDITERRVHEEASRVQQ FT EKIQLTSRLTTMGEMASSLAHELNQPLTAIANYSMGAVALVKAGHTSPNMLLPALEKAA FT SQAERAGKIISRIREFVKRSEPRRQRVAISRIVDNAIGFAEIDARKRRIRIERFVPSNA FT PDVLADPILIEQVLLNLLKNGLEAMEKSESDELKVAVIPHEQHIEVAVVDRGHGLPEPE FT RLFEPFFSTKSQGLGMGLNICRTIIESHHGRLWADPNPAGGTIFRFTLPCATPQSQAQN FT DQSEELHA" FT misc_feature complement(169717..170034) FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 1.6e-32" FT misc_feature complement(170158..170370) FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain, score 1.3e-08" FT misc_feature complement(170758..170886) FT /note="HMMPfam hit to PF00785, PAC motif, score 4.2e-07" FT misc_feature complement(170911..171108) FT /note="HMMPfam hit to PF00989, PAS domain, score 6.7e-10" FT misc_feature complement(join(171154..171219,171283..171348)) FT /note="2 probable transmembrane helices predicted for FT BPP1461 by TMHMM2.0 at aa 24-46 and 67-89" FT CDS 171713..174418 FT /transl_table=11 FT /gene="aceE" FT /locus_tag="BPP1462" FT /product="pyruvate dehydrogenase E1 component" FT /EC_number="1.2.4.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP0993" FT /db_xref="GOA:Q7WAB7" FT /db_xref="InterPro:IPR004660" FT /db_xref="UniProtKB/TrEMBL:Q7WAB7" FT /protein_id="CAE36764.1" FT /translation="MSSFAQAGALAAANDEDTLETQEWLEALAAVLDREGPQRAHYLLE FT RLIDEARRSGAHIPFSPNTAYVNTIPPGLEPAHPGNLELEARIRSYVRWNAMAMVVRAN FT KHNPPDGGDLGGHIASFASLATMIGCGQNHFWHGETEEHGGDLVYFQGHTSPGMYGRAY FT LEGRLTEDQLNHFRREVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPLMAIYQARFLKYL FT HARGIADTSNRKVWVFCGDGEMDEPESLGAIALAAREKLDNLIFVINCNLQRLDGPVRG FT NGKIIQELEGDFRGSGWNVIKLIWGGYWDPLLAHDKEGILRRIMEEAVDGEYQAYKAND FT GKYVREHFFGKHPKLLEMVARMSDEDIWRLNRGGHDPHKVYAAFDAASKHAGQPTVILA FT KTIKGYGMGHVGQAKNPTHQQKKLELDSIREFRDRFGIPIPDDKLEELPYYKPAEDSPE FT MQYLHERRKALGGYLPKRRAKADEQLKAPALDAFKAVLEPTAEGREISTTQAFVRVLNQ FT ILRDKDLGPRVVPILADESRTFGMEGLFRQIGIYAPEGQKYTPVDKDQVMYYKESADGQ FT LLQEGINEAGAMSSWMAAATSYSTNNRIMVPFYIYYSMFGFQRVGDLAWAAGDMQARGF FT LLGGTAGRTTLNGEGLQHEDGHSHLLASTIPNCVSYDPTFAHELAVIIQHGLKRMVEDQ FT ENVYYYLTVMNENYPQPGLTAGDEEGIIRGMYKLKSHGKGKQRVQLMGSGTILREVMAA FT QELLEADWGVASDIWSVTSLTELRRDGLDAERHNLLHPEGKQQVPYVTTQLAKSEGPII FT ASTDYMKLFADQIRPFVPKDRTYKVLGTDGFGRSDFRYKLREHFEVDRHFVVLASLRAL FT ADEGKIPAAKVAEAIKKYGINPNKANPHHA" FT misc_feature 171962..173134 FT /note="HMMPfam hit to PF00456, Transketolase, thiamine FT diphosphate binding domain, score 6.8e-06" FT CDS 174431..176053 FT /transl_table=11 FT /gene="aceF" FT /locus_tag="BPP1463" FT /product="dihydrolipoamide acetyltransferase component of FT pyruvate dehydrogenase complex" FT /EC_number="2.3.1.12" FT /note="ortholog of Bordetella pertussis (BX470248) BP0994" FT /db_xref="GOA:Q7WAB6" FT /db_xref="HSSP:1DPC" FT /db_xref="InterPro:IPR006256" FT /db_xref="UniProtKB/TrEMBL:Q7WAB6" FT /protein_id="CAE36765.1" FT /translation="MSNIVEIKVPDIGDFKEVEVIEVLVSAGDTIKAEQSLITVESDKA FT SMEIPASAAGVVKSVKVKVGDKIAEGTVILEVEAAGEAAAAPKAEQAPEAAEAPKADAA FT KAEAPAAAGPIEVKVPDIGDFKEVEVIEVLVAEGDTIKAEQSLITVESDKASMEIPASA FT GGVVQSLKVKVGDKVAMGTVIAVVQGQGAAAPAAKAEAPAAAEPAASASASAPAPAQRP FT APAAALQDEDLKPGQLPHASPSVRKFARELGVNLSRVTGSAAKGRITADDVRAYVKQAL FT SAGAPAGASGGGDGAALGLLPWPKIDFTKFGPIEAKPLSRIKKISGANLHRNWVMIPHV FT TNNDEADITDLEALRVALNKENEKSGVKVTMLAFLIKAVVAALKKFPEFNASLDGDNLV FT LKQYYHIGFAADTPNGLVVPVVRDADKKGILELARETSELARKAREGKVSPAEMQGGCF FT SISSLGGIGGTHFTPIINAPEVAILGVSRSAHKPVWDGKQFVPRLTLPLSLSYDHRVID FT GASAARFNAYLGQLLADFRRIAL" FT misc_feature 174443..174661 FT /note="HMMPfam hit to PF00364, Biotin-requiring enzyme, FT score 1.4e-23" FT misc_feature 174512..174601 FT /note="PS00189 2-oxo acid dehydrogenases acyltransferase FT component lipoyl binding site." FT misc_feature 174773..174991 FT /note="HMMPfam hit to PF00364, Biotin-requiring enzyme, FT score 1.7e-22" FT misc_feature 174842..174931 FT /note="PS00189 2-oxo acid dehydrogenases acyltransferase FT component lipoyl binding site." FT misc_feature 175145..175261 FT /note="HMMPfam hit to PF02817, e3 binding domain, score FT 2.3e-13" FT misc_feature 175361..176047 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00198, 2-oxo acid dehydrogenases FT acyltransferase (catalytic domain), score 4.5e-105" FT CDS 176066..177841 FT /transl_table=11 FT /gene="lpdA" FT /gene_synonym="lpd" FT /locus_tag="BPP1464" FT /product="dihydrolipoamide dehydrogenase" FT /EC_number="1.8.1.4" FT /note="ortholog of Bordetella pertussis (BX470248) BP0995" FT /db_xref="GOA:Q7WAB5" FT /db_xref="HSSP:1BHY" FT /db_xref="InterPro:IPR000815" FT /db_xref="UniProtKB/TrEMBL:Q7WAB5" FT /protein_id="CAE36766.1" FT /translation="MSNIVEIKVPDIGDFKEVEVIEVLVAAGDTIKAEQSLITVESDKA FT SMEIPASSAGVVKSVKVKVGDKVAEGTVILDVEAAGEAAAAPKAEAPKAEAPKADAPKA FT PAAKASAPAAAAYSGSADLECDMLVLGAGPGGYSAAFRAADLGMDTVMVERYATLGGVC FT LNVGCIPSKALLHNAAVIDEARALAAHGISFGEPKVDLDKLRGYKDGVVAKLTGGLAGM FT ARACKVRVATGTGEFADPHHLTVTDGEGKKQTIRFKQAIIAAGSQSVKLPFLPDDERIV FT DSTGALQLRAIPKKMLIIGGGIIGLEMGTVYSTLGARLDVVEMLDGLMQGADRDLVKVW FT QKMNAPRFDNIMLKTKTVGAEARKDGIYVSFEGEGAPKEPQRYDLVLQAVGRSPNGKKI FT GAERAGVAVTERGFIEVDRQMRTNVPHIYAIGDVVGQPMLAHKAVHEGHVAAEAAHGEK FT SFFDARVIPSVAYTDPEVAWVGLTEDEAKKQGVKVEKGLFPWAASGRAIANGRDEGFTK FT LLFDAETHRIVGGGIVGTHAGDLISEIALAIEMGADMVDIGKTIHPHPTLGESVGMAAE FT VAEGVCTDLPPMRKK" FT misc_feature 176078..176296 FT /note="HMMPfam hit to PF00364, Biotin-requiring enzyme, FT score 8.7e-24" FT misc_feature 176147..176236 FT /note="PS00189 2-oxo acid dehydrogenases acyltransferase FT component lipoyl binding site." FT misc_feature 176441..177391 FT /note="HMMPfam hit to PF00070, Pyridine FT nucleotide-disulphide oxidoreductase, score 6.1e-83" FT misc_feature 176543..176575 FT /note="PS00076 Pyridine nucleotide-disulphide FT oxidoreductases class-I active site." FT misc_feature 177461..177790 FT /note="HMMPfam hit to PF02852, Pyridine FT nucleotide-disulphide oxidoreductase, dimerisation domain, FT score 1.2e-49" FT CDS complement(178064..179242) FT /transl_table=11 FT /gene="flaA" FT /locus_tag="BPP1465" FT /product="flagellin" FT /note="ortholog of Bordetella pertussis (BX470248) BP0996" FT /db_xref="GOA:Q7WAB4" FT /db_xref="HSSP:1ORY" FT /db_xref="InterPro:IPR001492" FT /db_xref="UniProtKB/TrEMBL:Q7WAB4" FT /protein_id="CAE36767.1" FT /translation="MAAVINTNYLSLVAQNNLNKSQSALGSAIERLSSGLRINSAKDDA FT AGQAIANRFTANVKGLTQAARNANDGISIAQTTEGALNEINNNLQRIRELTVQASNGTN FT SASDIDSIQQEVNQRLEEINRIAEQTDFNGIKVLKSNATDMTLSIQVGAKDNETIDIKI FT DRNSNWNLYDAVGTVPGGTVNGEARTVNALGFDVLSAVTTTIASSDTVTFDAAVAAAEQ FT AAGAAVGDGSVVSYGDTANPQYAVVVDNAGTMTSYALTFDKDGKAALGDQLGAVASQAA FT EAAVGTNDVAAGANVTVSGGAADALSKLDDAMKAVDEQRSSLGAIQNRFESTVANLNNT FT ITNLSAARSRIEDSDYATEVSNMTKNQILQQAGTSVLAQANQVPQNVLSLLR" FT misc_feature complement(178133..178348) FT /note="HMMPfam hit to PF00700, Bacterial flagellin FT C-terminus, score 7.9e-41" FT misc_feature complement(178727..179158) FT /note="HMMPfam hit to PF00669, Bacterial flagellin FT N-terminus, score 2.6e-78" FT CDS complement(join(179629..179709,179712..180368)) FT /pseudo FT /transl_table=11 FT /gene="fliA" FT /gene_synonym="flaD" FT /locus_tag="BPP1466" FT /product="RNA polymerase sigma factor for flagellar operon FT (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1021" FT /db_xref="PSEUDO:CAE36768.1" FT misc_feature complement(join(179692..179709,179712..180365)) FT /note="HMMPfam hit to PF00140, Sigma-70 factor, score FT 2.8e-59" FT variation complement(179710..179713) FT /note="(C)4 in parapertussis; (C)2 in pertussis" FT misc_feature complement(180228..180269) FT /note="PS00715 Sigma-70 factors family signature 1." FT CDS 180804..181127 FT /transl_table=11 FT /gene="flhD" FT /gene_synonym="flbB" FT /gene_synonym="frlA" FT /locus_tag="BPP1467" FT /product="flagellar transcriptional activator FlbB" FT /note="ortholog of Bordetella pertussis (BX470248) BP1022" FT /db_xref="GOA:Q7WAB3" FT /db_xref="InterPro:IPR007911" FT /db_xref="UniProtKB/Swiss-Prot:Q7WAB3" FT /protein_id="CAE36769.1" FT /translation="MKTADSSLLADIREVNLSYLLLAQRMLRDDYAASMFRLGFSNEVA FT DILMRLSPAQLVKLASSSSLLCRFRFDDYSLLSALTQDVLGGALQQAHATILLARQPVE FT ELA" FT CDS 181162..181722 FT /transl_table=11 FT /gene="flhC" FT /gene_synonym="flaI" FT /gene_synonym="frlB" FT /locus_tag="BPP1468" FT /product="flagellar transcriptional activator FlhC" FT /note="ortholog of Bordetella pertussis (BX470248) BP1023" FT /db_xref="GOA:Q7WAB2" FT /db_xref="InterPro:IPR007944" FT /db_xref="UniProtKB/TrEMBL:Q7WAB2" FT /protein_id="CAE36770.1" FT /translation="MATKSVSQEADEILLASSMITLGARLQVLQAETGLSHDRLARLYR FT EIRGCSPPKGMLPFSVDWFMTWLPNIHSSLFYNVYTFLNQRTSSQGIRAVIDAYRLYLE FT HAPADAAEPVLSFTRAWMLVRFFDGGMLQLSGCRQCGGHFIAHAHDPQTDFVCAICRPP FT PRAGKTRAAARARAGQLAAPARP" FT CDS 181843..182718 FT /transl_table=11 FT /gene="motA" FT /locus_tag="BPP1469" FT /product="chemotaxis protein MotA" FT /note="ortholog of Bordetella pertussis (BX470248) BP1024" FT /db_xref="GOA:Q7WAB1" FT /db_xref="InterPro:IPR000540" FT /db_xref="UniProtKB/TrEMBL:Q7WAB1" FT /protein_id="CAE36771.1" FT /translation="MLIVIGYAVVILAVVGSFIGLGGHLGALYQPFELTLIAGAAVGAF FT MAGNSRKSLGLVAKAIPEAFRSSPYSKDVYMELMALLYVLLNKARREGLMAIESHIEDP FT LSSPIFNEYPRIMKDAKLMEFITDYLRIMISGNMSSFEIETLMDEEIETYRHEREVPTH FT ALQQVADALPAFGIVAAVLGVIKALAAVDQPPAILGDLISKAMVGTFLGVLLAYGFVAP FT MAARIERRTSESVKVLECIKVTLLASMNGYPPQLAVEFGRKVLFSAVRPSFGELEEHVR FT QAKSAATGRA" FT misc_feature join(181846..181914,181924..181992,182344..182412, FT 182455..182523) FT /note="4 probable transmembrane helices predicted for FT BPP1469 by TMHMM2.0 at aa 2-24, 28-50, 168-190 and 205-227" FT misc_feature 182455..182508 FT /note="PS01307 Flagellar motor protein motA family FT signature." FT CDS 182731..183678 FT /transl_table=11 FT /gene="motB" FT /locus_tag="BPP1470" FT /product="chemotaxis protein MotB" FT /note="ortholog of Bordetella pertussis (BX470248) BP1025" FT /db_xref="GOA:Q7WAB0" FT /db_xref="InterPro:IPR006665" FT /db_xref="UniProtKB/TrEMBL:Q7WAB0" FT /protein_id="CAE36772.1" FT /translation="MSTVNNHRVVIRRRKVRRGGHHGGSWKIAYADFITAMMAFFLVMW FT LISIVPREELKGIAEYFRMPLRVALTGGPSSSAETSAIPGGGQDPLRSQGDVRRAEGNR FT VEAQPMGDAERRDRHRLERLKVRLENLIEESPVLKNFRPQLLIDMTTEGLRIQIVDNQN FT RPMFATGSADVQPYMRDILRELGPVLNDLPNKISIAGHTDASQYARGERAYSNWELSAD FT RANASRQELVAGGMHEGKVLRIQGLASSMSLVKDDPFAAVNRRISLVVLNASTQRRIEN FT ENAAAADVNARDAQGVGAALAGQLAASGSDGGAR" FT misc_feature 182812..182880 FT /note="1 probable transmembrane helix predicted for BPP1470 FT by TMHMM2.0 at aa 28-50" FT misc_feature 183226..183522 FT /note="HMMPfam hit to PF00691, OmpA family, score 7.9e-21" FT CDS 183693..184073 FT /transl_table=11 FT /gene="cheY" FT /locus_tag="BPP1471" FT /product="chemotaxis protein CheY" FT /note="ortholog of Bordetella pertussis (BX470248) BP1026" FT /db_xref="GOA:Q7WAA9" FT /db_xref="HSSP:1JBE" FT /db_xref="InterPro:IPR001789" FT /db_xref="UniProtKB/TrEMBL:Q7WAA9" FT /protein_id="CAE36773.1" FT /translation="MTARILVADDSATMRMIVQAALTGAGWQVVTASDGKQALELAQAQ FT AVDLVVSDWNMPVMGGLDLIRGLRGQARYQDLPVLVLTTEDDGDSKAAARDLGVCGWLN FT KPLDPDVLVDLAAELLGVAPGA" FT misc_feature 183699..184064 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain, score 7.6e-29" FT CDS 184100..186157 FT /transl_table=11 FT /gene="cheA" FT /locus_tag="BPP1472" FT /product="chemotaxis protein CheA" FT /note="ortholog of Bordetella pertussis (BX470248) BP1028" FT /db_xref="GOA:Q7WAA8" FT /db_xref="HSSP:1I5N" FT /db_xref="InterPro:IPR008207" FT /db_xref="UniProtKB/TrEMBL:Q7WAA8" FT /protein_id="CAE36774.1" FT /translation="MSSGLDLSQFYETFFDEADELLAQMEQLLLELDVGAPDIEQLNAI FT FRAAHSIKGGAATFGCFQKLAGTTHLLENLLDAIRRGEMGLRADMVDIFLETKDVLKSQ FT LDAYRASEEPEDAVFERICAVLRQLALEGGQAPAAAAPAPVAASEPGPEPEPAPQPAAA FT STAAGLPLRVRFSKVSDKDAQSLLEEMGNLGDVRASERAGQTLTVWVDTTCSPDDIEAV FT CCFIIDADQLEIAREAEPAHASAQAAVAAAPDAAATPAPVAAPAAAQAAEPARAARPSI FT APAHADKESTSIRVGVEKVDQVINLVGELVITQAMLAQTASTLDPVLHDRLLNGMEQLE FT RNARDLQEAVMSIRMMPMDYVFSRFPRLVRDIAGKMGKQIELQTYGRATELDKSLIERI FT IDPLTHLVRNSLDHGIETPDKRVAAGKEPVGQLVLSAQHNGGNIVIEVSDDGGGLSRER FT ILRKAVAQGLTVNENSPDDEIWQLIFAPGFSTGDQVTDISGRGVGMDVVRRNIQDMGGH FT VQLSSVPGQGTTTRIVLPLTLAILDGMSVRVGEETFILPLNHVTESLQPQADQIYSVAG FT NERVMQVRGEYLPLVEMHRVFSVGQAQADPTQAIAVIMQAEERRFALLVDHLVGQHQVV FT VKNLESNYRKVPGISAATILGDGSVALIVDVFALARANREKWSQPEAILN" FT misc_feature 184118..184435 FT /note="HMMPfam hit to PF01627, Hpt domain, score 3.9e-36" FT misc_feature 184139..184165 FT /note="PS00039 DEAD-box subfamily ATP-dependent helicases FT signature." FT misc_feature 184967..185158 FT /note="HMMPfam hit to PF02895, Signal transducing histidine FT kinase, homodimeric domain, score 1.6e-22" FT misc_feature 185291..185710 FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 1.2e-25" FT misc_feature 185717..186121 FT /note="HMMPfam hit to PF01584, CheW-like domain, score FT 6.1e-32" FT CDS 186154..186672 FT /transl_table=11 FT /gene="cheW" FT /locus_tag="BPP1473" FT /product="chemotaxis protein CheW" FT /note="ortholog of Bordetella pertussis (BX470248) BP1029" FT /db_xref="GOA:Q7WAA7" FT /db_xref="InterPro:IPR002545" FT /db_xref="UniProtKB/TrEMBL:Q7WAA7" FT /protein_id="CAE36775.1" FT /translation="MTERHIMAAKPHTQATRAEDVGNEFLVFTLGEEEYGIDILKVQEI FT RGYDAATVTRIANVPSFIKGVTNLRGIIVPIVDLRIKFNLGSVEYNEQTVVIILNLDRR FT VVGIVVDGVSDVLMLNAAQVRPAPEFGATLSTEYLTGLGTVDERMLILVDIEKLMTSDE FT MALVEKVAS" FT misc_feature 186217..186642 FT /note="HMMPfam hit to PF01584, CheW-like domain, score FT 5.6e-49" FT CDS 186746..188452 FT /transl_table=11 FT /gene="tsr" FT /gene_synonym="cheD" FT /locus_tag="BPP1474" FT /product="methyl-accepting chemotaxis protein I" FT /note="ortholog of Bordetella pertussis (BX470248) BP1030" FT /db_xref="GOA:Q7WAA6" FT /db_xref="InterPro:IPR003660" FT /db_xref="UniProtKB/TrEMBL:Q7WAA6" FT /protein_id="CAE36776.1" FT /translation="MRKFLANLSIRGSLLGVLAFFSFMLVVGAALGVLSLRVSNDTLQG FT VKQTQDVADAMDRVVNSYKDAFNGLGRAAASHYGAIVSAIGQPVQVEQGLGSEAAGLLQ FT RAKASLNRAETEYEYYKGLARPASAADSLKEVENAFEALVGQGLHPLAAALEKGDMAGY FT QSHAQNVLDALEGRFSGAIAAFDFWRASELLDAHEVAETRYRFVLAAVAAGGVLAALLV FT FSTYLFLRRRVLQPLREVGQHFDKIAAGDLTARVDVRNSNEIGQLFAGLKRMEESLTRT FT VAAVRRGVDEINVGSREISAGNTDLSSRTEEQAASLEETAASMEQLASTVKQNADNARQ FT ANQLAGVASDVAERGGSAVSEVVATMQDISASSRKISEIVSVIDGIAFQTNILALNAAV FT EAARAGEQGKGFAVVAGEVRSLAQRSAQAAKEIKVLIEDSVGKVGTGSQQVERAGATMQ FT EIVASVKRVTDIMGEISAASEEQSSGIEQVNRAVSQMDEVTQQNAALVEEAAAAAGSLQ FT EQAQRLAEAVAVFRINAGEVIEVPAHQLGSRQAPGARETALAHDDALALGH" FT misc_feature 186746..186832 FT /note="Signal peptide predicted for BPP1474 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.658 between residues 29 and 30" FT misc_feature join(186788..186856,187361..187429) FT /note="2 probable transmembrane helices predicted for FT BPP1474 by TMHMM2.0 at aa 15-37 and 206-228" FT misc_feature 187376..187585 FT /note="HMMPfam hit to PF00672, HAMP domain, score 9.7e-14" FT misc_feature 187646..188344 FT /note="HMMPfam hit to PF00015, Methyl-accepting chemotaxis FT protein (MCP) signaling domain, score 5.6e-111" FT CDS 188461..189321 FT /transl_table=11 FT /gene="cheR" FT /gene_synonym="cheX" FT /locus_tag="BPP1475" FT /product="chemotaxis protein methyltransferase" FT /EC_number="2.1.1.80" FT /note="ortholog of Bordetella pertussis (BX470248) BP1031" FT /db_xref="GOA:Q7WAA5" FT /db_xref="HSSP:1BC5" FT /db_xref="InterPro:IPR000780" FT /db_xref="UniProtKB/TrEMBL:Q7WAA5" FT /protein_id="CAE36777.1" FT /translation="MATAMTTPAFSAERQFEFRDADFARVRQMIYARAGISLGAHKREM FT VYSRLARRLRALGQQEFRVYLDGLENEPAAPEWEDFVNALTTNLTAFFRESHHFPILAD FT FARQRGGPVSVWCCAASTGEEPYSIAMTLVESLGARAQASQLLATDIDTNCLQRARAGV FT YPYERVAKLDPARLKRFFMRGRGANEGQVKVRAELADMVRFETLNLLAPHWPINEKFDA FT IFCRNVMIYFDKPTQARILRRFVPLLKPGGLLFAGHSENFTYISRDFRLRGQTVYEQAS FT GELPV" FT misc_feature 188515..188685 FT /note="HMMPfam hit to PF03705, CheR methyltransferase, FT all-alpha domain, score 5.8e-16" FT misc_feature 188722..189297 FT /note="HMMPfam hit to PF01739, CheR methyltransferase, SAM FT binding domain, score 9.7e-77" FT CDS 189318..190370 FT /transl_table=11 FT /gene="cheB" FT /locus_tag="BPP1476" FT /product="protein-glutamate methylesterase" FT /EC_number="3.1.1.61" FT /note="ortholog of Bordetella pertussis (BX470248) BP1032" FT /db_xref="GOA:Q7WAA4" FT /db_xref="InterPro:IPR001789" FT /db_xref="UniProtKB/Swiss-Prot:Q7WAA4" FT /protein_id="CAE36778.1" FT /translation="MKKIKVLCVDDSALVRGLMTEIINSHPDMEVVATAPDPLVARELI FT KKHNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTERGGEITLRALELGAIDF FT VTKPKLGIRDGLIEYSEVIADKIRAASRARLRAPAPAGHAAPLRLRSPFASSEKLVIVG FT ASTGGTEAIREVLQPLPADSPAILITQHMPAGFTRSFAQRLDALCAVTVREASDGERVL FT PGHVYLAPGGETHMRLGRSGANYVIGLQASEPVNRHRPSVDVLFHSAAEAAGGNAIGVI FT LTGMGKDGAAGLLAMKRAGARTMAQDEASCVVFGMPREAIALGAADEVMPLADISERIL FT TRLGDRGHRV" FT misc_feature 189327..189698 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain, score 1e-31" FT misc_feature 189792..190343 FT /note="HMMPfam hit to PF01339, CheB methylesterase, score FT 5.5e-110" FT CDS 190423..190812 FT /transl_table=11 FT /gene="cheY" FT /locus_tag="BPP1477" FT /product="chemotaxis protein CheY" FT /note="ortholog of Bordetella pertussis (BX470248) BP1033" FT /db_xref="GOA:Q7WAA3" FT /db_xref="HSSP:1JBE" FT /db_xref="InterPro:IPR001789" FT /db_xref="UniProtKB/TrEMBL:Q7WAA3" FT /protein_id="CAE36779.1" FT /translation="MVDKGMKILVVDDFPTMRRIIRNLLKELGFENVDEAEDGAIGLEK FT LRNGAFQFVVSDWNMPNLDGLEMLKQIRADAALKSLPVLMVTAEAKKENIVAAAQAGAN FT GYVVKAFTAATLEEKLNKIFEKLAG" FT misc_feature 190438..190806 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain, score 3.3e-39" FT CDS 190821..191453 FT /transl_table=11 FT /gene="cheZ" FT /locus_tag="BPP1478" FT /product="chemotaxis protein CheZ" FT /note="ortholog of Bordetella pertussis (BX470248) BP1034" FT /db_xref="GOA:Q7WAA2" FT /db_xref="InterPro:IPR007439" FT /db_xref="UniProtKB/TrEMBL:Q7WAA2" FT /protein_id="CAE36780.1" FT /translation="MNATDTGMQADPTDLIQRIASLTRMLRDSMRELGLDQAIKDAAEA FT IPDARDRLRYLAQMTEQAANRVLNAIEAAGPIQDGMARGAQALDERWQQWYDQPLELPQ FT ARALVQDTRAFLAAVPQHTQQTQAKLMEIVMAQDFQDLTGQVIMRMMDVVGAIERELLQ FT VLLDNVPQERRDEANSLLNGPQVNPGGKADVVTSQDQVDDLLASLGF" FT CDS 191680..192834 FT /transl_table=11 FT /gene="flhB" FT /locus_tag="BPP1479" FT /product="flagellar biosynthetic protein FlhB" FT /note="ortholog of Bordetella pertussis (BX470248) BP1366" FT /db_xref="GOA:Q7WAA1" FT /db_xref="InterPro:IPR006135" FT /db_xref="UniProtKB/TrEMBL:Q7WAA1" FT /protein_id="CAE36781.1" FT /translation="MAEESDLEKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVVG FT VWLSGSMLYQGLTGVLRRGLGFEPRVAQDPGVMVEQAVHGAGRALLTVLPMFGMLAVVA FT VLSAVLLGGFVFSTKPLEPNFSKLSLWSGIKRMFSAQTVVELVKALAKAALVGGVAVWV FT IWHYHDDMLGLMHVAPSAALTSAMSLVALCSALIVGSLLFVVLLDVPWQIWNHLKKLRM FT TKEDVRQEHKESEGDPHVKGRIRQQQRAMARRRMMSEVPGADVVVTNPTHYAVALKYAD FT GAAGAPRVVAKGTGLIAARIRELAAEHRIPTLEAPPLARALHQHVELGQEIPTALYTAV FT AEVLAWVFQLRSWRPGLGREPQAPTALAVPAELDPHSPPATQGA" FT misc_feature 191695..192723 FT /note="HMMPfam hit to PF01312, FlhB HrpN YscU SpaS Family, FT score 6e-141" FT misc_feature join(191785..191853,191959..192027,192106..192174, FT 192232..192300) FT /note="4 probable transmembrane helices predicted for FT BPP1479 by TMHMM2.0 at aa 36-58, 94-116, 143-165 and FT 185-207" FT CDS join(192838..194451,194455..194955) FT /pseudo FT /transl_table=11 FT /gene="flhA" FT /locus_tag="BPP1480" FT /product="flagellar biosynthesis protein FlhA (Pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1367" FT /db_xref="PSEUDO:CAE36782.1" FT misc_feature join(192871..192939,192952..193020,193054..193122, FT 193180..193248,193453..193521,193579..193647, FT 193684..193743,193753..193812) FT /note="8 probable transmembrane helices predicted for FT BPP1480 by TMHMM2.0 at aa 12-34, 39-61, 73-95, 115-137, FT 206-228, 248-270, 283-302 and 306-325" FT misc_feature join(192916..194451,194455..194919) FT /note="HMMPfam hit to PF00771, FHIPEP family, score 0" FT misc_feature 193267..193338 FT /note="PS00994 Bacterial export FHIPEP family signature." FT CDS join(194952..196325,196324..197310) FT /pseudo FT /transl_table=11 FT /gene="flhF" FT /locus_tag="BPP1481" FT /product="flagellar biosynthesis protein FlhF (Pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1368" FT /db_xref="PSEUDO:CAE36783.1" FT misc_feature 195522..196118 FT /note="HMMPfam hit to PF00448, SRP54-type protein, GTPase FT domain, score 2.5e-23" FT misc_feature 195549..195572 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT variation 196323..196325 FT /note="14 bp deletion in parapertussis, relative to FT pertussis, following this codon" FT CDS complement(197328..197810) FT /transl_table=11 FT /locus_tag="BPP1482" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1370" FT /db_xref="GOA:Q7WAA0" FT /db_xref="InterPro:IPR007809" FT /db_xref="UniProtKB/TrEMBL:Q7WAA0" FT /protein_id="CAE36784.1" FT /translation="MNSAALKSCLERENALVVEFLHALEAETEALMDRRAHESLQAAVQ FT RKETLADDLAQLGAERDALLSDAGLASGPAGTDAAAAAHPELGPLWQALQANAAQAREH FT NQRNGTLIAVNLRHTQESLDALRQAAGTGAAATYDAQGRGKRGYSSAASGRAIVAT" FT CDS complement(197827..198117) FT /transl_table=11 FT /gene="flgM" FT /locus_tag="BPP1483" FT /product="negative regulator of flagellin synthesis" FT /note="ortholog of Bordetella pertussis (BX470248) BP1371" FT /db_xref="GOA:Q7WA99" FT /db_xref="InterPro:IPR007412" FT /db_xref="UniProtKB/TrEMBL:Q7WA99" FT /protein_id="CAE36785.1" FT /translation="MKIQSSTSHPVGPNAVGARAEHAVAQAYGGGAQAGSGSAQVALSP FT ASRQLLAQEGGSDIDVERVAAIRAAIASGQLRIDPTRIADSLIASARDLLK" FT CDS complement(198244..199119) FT /transl_table=11 FT /gene="flgA" FT /locus_tag="BPP1484" FT /product="flagella basal body P-ring formation protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1372" FT /db_xref="GOA:Q7WA98" FT /db_xref="InterPro:IPR013974" FT /db_xref="UniProtKB/TrEMBL:Q7WA98" FT /protein_id="CAE36786.1" FT /translation="MRTDWPKKTGRTAWLAFWHDGILGCGRPPQKAKQPAISEPIRLLR FT GTAPFYNLPIMKSPRSRSIARLAALAILAGAMPRAAAEPPAQDPAELAAAAESYLRQQL FT AALPGEPSITLDPLRTDRLDACEALTPFMPSGMRVRARMTVGLRCVAPRTWTVYAQATV FT SVPGQYYVAARQIAPGKTIEAADLTTRDGDLVALPPGVITDAAAILGMRPAHRIAAGQP FT IKGAGLRSAESVSRGQSVRITARGNGFVVSSEGQALDNAPPSATVQVRTASGQVVSGIV FT QAAGLVEIQL" FT misc_feature complement(198250..198753) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF03240, FlgA family, score 5.8e-28" FT CDS 199138..199545 FT /transl_table=11 FT /gene="flgB" FT /gene_synonym="flbA" FT /gene_synonym="fla FII" FT /locus_tag="BPP1485" FT /product="flagellar basal-body rod protein FlgB" FT /note="ortholog of Bordetella pertussis (BX470248) BP1373" FT /db_xref="GOA:Q7WA97" FT /db_xref="InterPro:IPR001444" FT /db_xref="UniProtKB/TrEMBL:Q7WA97" FT /protein_id="CAE36787.1" FT /translation="MLDRLNEDFRFFQQSIALRAQRQEVLSSNIANADTPNYKARDFDF FT KAAMQGALEQRMRLPDTNLALTSARHIPGQATTPSPAELMYRLPYQPSLDGNTVDMDSE FT RVRFADNTLHYQSSLQVLSGRIRSLMSAIQE" FT misc_feature 199162..199254 FT /note="HMMPfam hit to PF00460, Flagella basal body rod FT protein, score 1.9e-06" FT CDS 199558..199977 FT /transl_table=11 FT /gene="flgC" FT /gene_synonym="flaW" FT /gene_synonym="fla FIII" FT /locus_tag="BPP1486" FT /product="flagellar basal-body rod protein FlgC" FT /note="ortholog of Bordetella pertussis (BX470248) BP1374" FT /db_xref="GOA:Q7WA96" FT /db_xref="InterPro:IPR019776" FT /db_xref="UniProtKB/TrEMBL:Q7WA96" FT /protein_id="CAE36788.1" FT /translation="MSLLSIFEIAGSALSAQSQRMNVSASNMANADSVAGPDGQPYRAR FT QVVFQVNPPPGQAFGQEIGGVRVAGVVEDQSPFKKIYDPKHPMADAQGYVNMPNVDPVA FT ETVNMIAASRSYQANVEVLNTAKQLMLKTLTIGQS" FT misc_feature 199576..199671 FT /note="HMMPfam hit to PF00460, Flagella basal body rod FT protein, score 1.1e-08" FT misc_feature 199594..199656 FT /note="PS00588 Flagella basal body rod proteins signature." FT CDS 200025..200729 FT /transl_table=11 FT /gene="flgD" FT /gene_synonym="flaV" FT /gene_synonym="fla FIV" FT /locus_tag="BPP1487" FT /product="basal-body rod modification protein FlgD" FT /note="ortholog of Bordetella pertussis (BX470248) BP1375" FT /db_xref="InterPro:IPR005648" FT /db_xref="UniProtKB/TrEMBL:Q7WA95" FT /protein_id="CAE36789.1" FT /translation="MTTVNETTSQAGLALAQAGSNSAAQGIQDQFLTLLVTQLRNQDPL FT NPMENAELTSQLAQISTVEGINNLKNTMLAISGQIDVSQSMDAVSMIGKGVLMPGDKVS FT LGTDPNDPAQRGATPFGIDLQGDATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGN FT NDGGQPLADGKYSITVSASDADANPVKTEALTYGQVKSVAYSTNGLRLDLGLAGQISML FT DVRKVIGASGSA" FT misc_feature 200025..200093 FT /note="Signal peptide predicted for BPP1487 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.780) with cleavage site FT probability 0.389 between residues 23 and 24" FT CDS 200795..202216 FT /transl_table=11 FT /gene="flgE" FT /gene_synonym="flaK" FT /gene_synonym="fla FV" FT /locus_tag="BPP1488" FT /product="flagellar hook protein FlgE" FT /note="ortholog of Bordetella pertussis (BX470248) BP1376" FT /db_xref="GOA:Q7WA94" FT /db_xref="InterPro:IPR020013" FT /db_xref="UniProtKB/TrEMBL:Q7WA94" FT /protein_id="CAE36790.1" FT /translation="MGFGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYAS FT SRVGLGVKVSAINQRFTVGNISTTGGEYDMAIDGGKGFFRLTDQSGGVFYSRNGEFMVD FT KNFYIVNAQGFRLTGYPAGGVGAQPVDLQLPQGNIAPQATSTAGLQTNLNANAKVIDPN FT DTPADDGAVELDGTTYRFTNASGTFAWVAPAPLDGTYNGGDIVIAGGAVTGDLASQPGY FT QPYKPLVAGIPFDPTNPLSYTDQVPTTVYDSLGNSHQMIQYFAKRPAVGTESVYEVYYV FT LDGQPMQVNGGASQTLNFDTAGNLLNQPPTAQVTFANPGGNAAPADPLAITVSYNGVTQ FT YGSDFAPKVVQNGYSSGEFMGLSVGKDGSLVAKYTNGETQTIGTLVLANFNNVQGLQPV FT GNNAWVETSESGQATLGQPGTNGLATIAGQALEASNVDMSRELVNMIVAQRTYQANAQT FT IKTQDEVMQVLMNMR" FT misc_feature 200801..200893 FT /note="HMMPfam hit to PF00460, Flagella basal body rod FT protein, score 3.4e-10" FT CDS 202255..203019 FT /transl_table=11 FT /gene="flgF" FT /gene_synonym="flaX" FT /gene_synonym="fla FVI" FT /locus_tag="BPP1489" FT /product="flagellar basal-body rod protein FlgF" FT /note="ortholog of Bordetella pertussis (BX470248) BP1377" FT /db_xref="GOA:Q7WA93" FT /db_xref="InterPro:IPR020013" FT /db_xref="UniProtKB/TrEMBL:Q7WA93" FT /protein_id="CAE36791.1" FT /translation="MDRIIYTAMNGAARIAEHQTVLGNNMANVNTPGFREQIALYRSVP FT MADGTSLPTRVSTVASTPGNNFEMGNMMTTGRELDVALAGPGWFALQTPQGEAYTRAGA FT LQVGVNGLLQTATGQPVLSDQNAVIEVPDQASLTIASDGTVTAIGAGDPPNNILNLGRL FT KMVNPPPQQLVHGDDGVFRMPQQPGGQPAAPLPADPSQRLLSGVLEGSNASPMGAMVGM FT IQNARRFEMQMQVIREADKNAERANGILAAAS" FT misc_feature 202267..202359 FT /note="HMMPfam hit to PF00460, Flagella basal body rod FT protein, score 1.7e-06" FT misc_feature 202285..202347 FT /note="PS00588 Flagella basal body rod proteins signature." FT CDS join(203063..203542,203546..203848) FT /pseudo FT /transl_table=11 FT /gene="flgG" FT /gene_synonym="flaL" FT /gene_synonym="fla FVII" FT /locus_tag="BPP1490" FT /product="flagellar basal-body rod protein FlgG FT (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1378" FT /db_xref="PSEUDO:CAE36792.1" FT misc_feature 203075..203167 FT /note="HMMPfam hit to PF00460, Flagella basal body rod FT protein, score 1.1e-10" FT variation 203543..203545 FT /note="In-frame TAG stop codon in parapertussis; CAG in FT pertussis" FT CDS 203845..204537 FT /transl_table=11 FT /gene="flgH" FT /gene_synonym="flaY" FT /gene_synonym="fla FVIII" FT /locus_tag="BPP1491" FT /product="flagellar L-ring protein precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP1379" FT /db_xref="GOA:Q7WA92" FT /db_xref="InterPro:IPR000527" FT /db_xref="UniProtKB/Swiss-Prot:Q7WA92" FT /protein_id="CAE36793.1" FT /translation="MMLKTVLRLPVCAALLALAAGCAMIPPEPVVTGPLTAPPPPPPQP FT SARPNGSIYQPSAYGNYPLFEDRRPRNVGDIVTIVLEEKTNAAKGVATNTSRDGSATLG FT VAAAPRFMDGVINDKLDTDISGGNTANGTGKSSANNTFTGTITTTVIGVLPNGNLQIAG FT EKQIAINRGSEYVRFSGVVDPRSITGSNTVSSTRVADARIEYRSKGVMDEVQTMGWLQR FT FFLIASPF" FT misc_feature 203845..203940 FT /note="Signal peptide predicted for BPP1491 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.424 between residues 32 and 33" FT misc_feature 203878..203910 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 203908..204531 FT /note="HMMPfam hit to PF02107, Flagellar L-ring protein, FT score 2.9e-68" FT CDS 204540..205673 FT /transl_table=11 FT /gene="flgI" FT /gene_synonym="flaM" FT /gene_synonym="fla FIX" FT /locus_tag="BPP1492" FT /product="flagellar P-ring protein precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP1380" FT /db_xref="GOA:Q7WA91" FT /db_xref="InterPro:IPR001782" FT /db_xref="UniProtKB/Swiss-Prot:Q7WA91" FT /protein_id="CAE36794.1" FT /translation="MTFPTSLSVLLIPLARAVLALALLGAGAAHAERLKDLASIQGVRG FT NQLIGYGLVVGLDGSGDQVRQTPFTQQSLTNMLSQLGITVPQGSNMQLKNVAAVMVTAT FT LPSFARPGQTVDVVVSSMGNAKSLRGGTLLMTPLKGADNQVYAIAQGNLLVGGAGASAG FT GSSVQINQLNGGRISNGAIVERAVPTMYAQDGTVYLEMNNTDFGTTQNAAAAINRQFGA FT GTAMALDGRVIQVRGPLDPSMMPAFMSQVENLQVARAPATAKVIINARTGSVVMNRTVM FT IEEAAVAHGNLSVIINRQNQVFQPDTPFTEGQTVVVPNTQIEVRQDGGALQRVTTSANL FT ADVVKALNALGATPQDLLAILQAMKTAGALRADLEII" FT misc_feature 204540..204632 FT /note="Signal peptide predicted for BPP1492 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.990 between residues 31 and 32" FT misc_feature 204558..204626 FT /note="1 probable transmembrane helix predicted for BPP1492 FT by TMHMM2.0 at aa 7-29" FT misc_feature 204636..205667 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02119, Flagellar P-ring protein, FT score 4.1e-196" FT CDS 205691..206710 FT /transl_table=11 FT /gene="flgJ" FT /gene_synonym="flaZ" FT /gene_synonym="fla FX" FT /locus_tag="BPP1493" FT /product="peptidoglycan hydrolase" FT /EC_number="3.2.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP1381" FT /db_xref="GOA:Q7WA90" FT /db_xref="InterPro:IPR019301" FT /db_xref="UniProtKB/TrEMBL:Q7WA90" FT /protein_id="CAE36795.1" FT /translation="MSFVSYTPRPGVQESVFDLGRLADLKRDAVKAPDGQRQQTEVARQ FT FEALFLQMMLKRMREATPKEGLFDSQQTEMLQGMADEQLALQLASPGIGLAQALLGQMQ FT QGQPPVPAAAAAGGDAAAARALAGTAAPAPLVRDLRGNYVQPDPAPRREVNALLDVLRS FT NRARDRAMAAAEGAPSHVVDFVSRMSRAANVAAQQSGVPARLILGQAALESGWGRRELR FT HEDGSTSYNLFGIKAGASWKGKVVNVMTTEYVDGVAQKLVQPFRAYSSYEESFSDYARL FT IGNSPRYEAVTQAGNEIEAARRIQEAGYATDPRYAEKLISIMGQLRTSVARADFSGGL" FT misc_feature 206228..206680 FT /note="HMMPfam hit to PF01832, Mannosyl-glycoprotein FT endo-beta-N-acetylglucosamidase, score 1.1e-39" FT CDS 206780..208426 FT /transl_table=11 FT /gene="flgK" FT /gene_synonym="flaS" FT /gene_synonym="flaW" FT /locus_tag="BPP1494" FT /product="flagellar hook-associated protein 1" FT /note="ortholog of Bordetella pertussis (BX470248) BP1382" FT /db_xref="GOA:Q7WA89" FT /db_xref="InterPro:IPR002371" FT /db_xref="UniProtKB/TrEMBL:Q7WA89" FT /protein_id="CAE36796.1" FT /translation="MNLYNLALTGLNASQAGLETTSHNINNATTVGYSRQRVITSTAGA FT GETGQGFFGRGVQVDTVTRQYDSFLYRQLVGAQGSSAQLSTHLAQVSQVNNLFGDRTVG FT ITPALAGLFTSTNAAATKPADPAVRADMIGKANSLVTQINTAYQELENQRNGLNTQIST FT TVEQVNSYLERINDLNKQIVIARGKDGHAPNDLLDQRDQAVSELNQLTGIRFYEQGDTF FT NITLQSGQTLLSGTTVYPLQAVPSASDPKRLAVAYTLPSGPGTTIQVEMNDSEVTGGQL FT GGLLSFRSQSLDAVQDQLGQLAIGLAMAFNAQHREGYDLDGQPGGDMFGLQAPAAIRNS FT GNTSTGEWQSAYTDADAIRASAYRIQYDGANYTVTRLSDGSSFDVTPSGTPPTLSFDGL FT TLTGSGTPAAGDAWTLQPARDAARDLKQLISDPSKLALADSALGTTNGNNGLKLAELQT FT AKVLGNGSMSLNEMFSQLVNNVGVQTQQVSTANTAQANLVKQQATAHLSVSGVNLNEEY FT VNLTIFQEQYQASAKILDVASTVFDTLLGLR" FT CDS 208460..209992 FT /transl_table=11 FT /gene="flgL" FT /gene_synonym="flaT" FT /gene_synonym="flaU" FT /locus_tag="BPP1495" FT /product="flagellar hook-associated protein 3" FT /note="ortholog of Bordetella pertussis (BX470248) BP1383" FT /db_xref="GOA:Q7WA88" FT /db_xref="InterPro:IPR013384" FT /db_xref="UniProtKB/TrEMBL:Q7WA88" FT /protein_id="CAE36797.1" FT /translation="MRLSTALIYQNGLNGVLNQEAAMARLQEQLSSGRRVLTPADDPLA FT AALAVNVSQTSSMNSNYDANRKQAEQALGAQTNTLQSVVKNMQEMLKRVVEAGNGTMSD FT ADRQALVIALKGAREELVGLANATDGNGQYLFSGYKGFTQPYSFDAATGKVTYNGDLGQ FT RGIQVDQSRLMSGGDVGSDIFNSVTSGTLAYIADAGAGNAGTGQYSAVSFDGPRAGNYV FT GRDFRIEFTRDAVTDELQYSVLSDPPVVPPEQPLPANMPYSEGSVIDMNGVSIKLSGQP FT EAGDVFTVETPKSWKMGVQGDAANTGSATLTPVSLPDGLTGKNLSVAFLDDGAGGLLYS FT VTSTPPDPSLPANVPVKPGDVIDIGGLKVKVDGQPAAGDTYAVTTPKSANVDVFDTLND FT LIGALDTPISGDPQAAAALANTLATANKKLNLSLDNVLTVQASVGARLNELEALGNTGA FT QKGLSYVKQLSDLEDVNIYQATSDLLLRQVALQAASLALQRIQGNSLFSMGR" FT misc_feature 208538..208960 FT /note="HMMPfam hit to PF00669, Bacterial flagellin FT N-terminus, score 3.7e-09" FT CDS 210020..211687 FT /transl_table=11 FT /gene="tsr" FT /gene_synonym="cheD" FT /locus_tag="BPP1496" FT /product="methyl-accepting chemotaxis protein I" FT /note="ortholog of Bordetella pertussis (BX470248) BP1384" FT /db_xref="GOA:Q7WA87" FT /db_xref="InterPro:IPR003660" FT /db_xref="UniProtKB/TrEMBL:Q7WA87" FT /protein_id="CAE36798.1" FT /translation="MARAPLEERVFDGKRINMWSNLKVRTCITLVLGLFLVAMLVSNAM FT AWLGMSSSNDKLERVNNAYSNQAVPAYEAYVMLLRARLNMVSSMMDLQEGRLKESADTL FT AHAQRQAGEARERFEAFLAVAKASSGADRVGAVETAFHAYLEVAARQMEAMQNQKLGEF FT VQLNPSAQRLNTAFDTAASAYLDRIDTDTDALVDDARAEHLRANTVTLVLIVLALALCA FT GCGVFIGRAVLRPLKEAGQHFDRIAAGDLTARVDVRSTNEIGQLFAALKRMQESLTRTV FT AAVRRGVDEINVGSREISAGNTDLSSRTEEQAASLEETAASMEQLASTVKQNADNARQA FT NQLAASASDVAERGGSAVSEVVTTMQDISASSRKISEIVSVIDGIAFQTNILALNAAVE FT AARAGEQGKGFAVVAGEVRSLAQRSAQAAKEIKVLIEDSVDKVGTGSQQVERAGATMQE FT IVASVKRVTDIMGEISAASEEQSSGIEQVNRAVSQMDEVTQQNAALVEEAAAAAGSLQE FT QAQRLAEAVAVFKINTGEVIEVPAHQLSGYAAPLVAQS" FT misc_feature 210020..210157 FT /note="Signal peptide predicted for BPP1496 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.782) with cleavage site FT probability 0.390 between residues 46 and 47" FT misc_feature join(210101..210169,210650..210718) FT /note="2 probable transmembrane helices predicted for FT BPP1496 by TMHMM2.0 at aa 28-50 and 211-233" FT misc_feature 210647..210856 FT /note="HMMPfam hit to PF00672, HAMP domain, score 1.7e-14" FT misc_feature 210917..211615 FT /note="HMMPfam hit to PF00015, Methyl-accepting chemotaxis FT protein (MCP) signaling domain, score 1.1e-110" FT CDS join(211866..213281,213285..213464) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP1497" FT /product="methyl-accepting chemotaxis protein (Pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1386" FT /db_xref="PSEUDO:CAE36799.1" FT misc_feature 212103..212228 FT /note="HMMPfam hit to PF00785, PAC motif, score 6.4e-06" FT misc_feature 212481..212690 FT /note="HMMPfam hit to PF00672, HAMP domain, score 9.7e-06" FT misc_feature join(212751..213281,213285..213449) FT /note="HMMPfam hit to PF00015, Methyl-accepting chemotaxis FT protein (MCP) signaling domain, score 1.1e-81" FT variation 213282..213284 FT /note="In-frame TAG stop codon in parapertussis; TCG in FT pertussis" FT CDS complement(join(213613..213771,213777..214406)) FT /pseudo FT /transl_table=11 FT /gene="fliR" FT /gene_synonym="flaP" FT /locus_tag="BPP1498" FT /product="flagellar biosynthetic protein FliR (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1389" FT /db_xref="PSEUDO:CAE36800.1" FT misc_feature complement(join(213643..213771,213777..214388)) FT /note="HMMPfam hit to PF01311, Bacterial export proteins, FT family 1, score 2e-77" FT misc_feature complement(join(213705..213770,213807..213872, FT 213954..214019,214119..214184,214215..214280, FT 214308..214373)) FT /note="6 probable transmembrane helices predicted for FT BPP1498 by TMHMM2.0 at aa 11-33, 42-64, 74-96, 129-151, FT 178-200 and 212-234" FT variation complement(213773..213787) FT /note="(GCGCC)3 in parapertussis; (GCGCC)2 in pertussis" FT CDS complement(214429..214698) FT /transl_table=11 FT /gene="fliQ" FT /gene_synonym="flaQ" FT /locus_tag="BPP1499" FT /product="flagellar biosynthetic protein FliQ" FT /note="ortholog of Bordetella pertussis (BX470248) BP1390" FT /db_xref="GOA:Q7WA86" FT /db_xref="InterPro:IPR006305" FT /db_xref="UniProtKB/TrEMBL:Q7WA86" FT /protein_id="CAE36801.1" FT /translation="MTAETVMSMTYQALKVALALAGPLLLVTLIVGLVISIFQAATQIN FT EMTLSFIPKLLAMCGTLVLLGPWLLGLLTDYIRQLIGQIPMLVS" FT misc_feature complement(214462..214689) FT /note="HMMPfam hit to PF01313, Bacterial export proteins, FT family 3, score 1.9e-36" FT misc_feature complement(join(214483..214548,214594..214659)) FT /note="2 probable transmembrane helices predicted for FT BPP1499 by TMHMM2.0 at aa 13-35 and 50-72" FT misc_feature complement(214579..214698) FT /note="Signal peptide predicted for BPP1499 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.889) with cleavage site FT probability 0.864 between residues 40 and 41" FT CDS complement(214715..215515) FT /transl_table=11 FT /gene="fliP" FT /gene_synonym="flaR" FT /locus_tag="BPP1500" FT /product="flagellar biosynthetic protein FliP" FT /note="ortholog of Bordetella pertussis (BX470248) BP1391" FT /db_xref="GOA:Q7WA85" FT /db_xref="InterPro:IPR005838" FT /db_xref="UniProtKB/TrEMBL:Q7WA85" FT /protein_id="CAE36802.1" FT /translation="MPVMSISFRFSDTRPRAPWWPAMAAVAVAAAALWPSGALAQATLP FT ALTATPGPNGSETYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVLGLLRSAMGTAMS FT PPNHVLIGLALFLTFYTMSPVFDKIYTDAYQPLAAGSIPFETAVERAGSPLHNFMLHQT FT RENDLTLFANLANLPAMEDPSQVPMRILIPAFITSELKTAFQIGFTIFIPFLIIDLVVA FT SVLMALGMMMVPPVTVALPFKLMLFVLADGWHLLLGSLAQSFYQ" FT misc_feature complement(214733..215314) FT /note="HMMPfam hit to PF00813, FliP family, score 7.9e-108" FT misc_feature complement(join(214745..214810,214832..214897, FT 215138..215194,215231..215296,215390..215455)) FT /note="5 probable transmembrane helices predicted for FT BPP1500 by TMHMM2.0 at aa 20-42, 73-95, 107-126, 206-228 FT and 235-257" FT misc_feature complement(214757..214795) FT /note="PS01061 Flagella transport protein fliP family FT signature 2." FT misc_feature complement(214892..214939) FT /note="PS01060 Flagella transport protein fliP family FT signature 1." FT misc_feature complement(215396..215515) FT /note="Signal peptide predicted for BPP1500 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.988 between residues 40 and 41" FT CDS complement(215518..215859) FT /transl_table=11 FT /gene="fliO" FT /gene_synonym="flbD" FT /gene_synonym="flaP" FT /locus_tag="BPP1501" FT /product="flagellar protein FliO" FT /note="ortholog of Bordetella pertussis (BX470248) BP1392" FT /db_xref="GOA:Q7WA84" FT /db_xref="InterPro:IPR007442" FT /db_xref="UniProtKB/TrEMBL:Q7WA84" FT /protein_id="CAE36803.1" FT /translation="MTESAVLRVVIGLALVIAAILVSAWLARRSGLIQRHGGALLRQVG FT GMSLGPRQRVVVLEIEGTWLVLGVTPNQLTTLHTLPAGQLPDPSPAAAGTFAAKLGQAL FT QRGHRVDRP" FT misc_feature complement(215779..215844) FT /note="1 probable transmembrane helix predicted for BPP1501 FT by TMHMM2.0 at aa 5-27" FT misc_feature complement(215791..215859) FT /note="Signal peptide predicted for BPP1501 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.646) with cleavage site FT probability 0.347 between residues 23 and 24" FT CDS complement(join(215870..216202,216206..216388)) FT /pseudo FT /transl_table=11 FT /gene="fliN" FT /gene_synonym="motD" FT /locus_tag="BPP1502" FT /product="flagellar motor switch protein FliN (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1393" FT /db_xref="PSEUDO:CAE36804.1" FT misc_feature complement(215903..216133) FT /note="HMMPfam hit to PF01052, Surface presentation of FT antigens (SPOA) protein, score 5.5e-34" FT CDS complement(216381..217391) FT /transl_table=11 FT /gene="fliM" FT /gene_synonym="fla AII" FT /gene_synonym="fla QII" FT /gene_synonym="CheC2" FT /locus_tag="BPP1503" FT /product="flagellar motor switch protein FliM" FT /note="ortholog of Bordetella pertussis (BX470248) BP1394" FT /db_xref="GOA:Q7WA83" FT /db_xref="InterPro:IPR001543" FT /db_xref="UniProtKB/TrEMBL:Q7WA83" FT /protein_id="CAE36805.1" FT /translation="MAYEAFLSQDEVDALLAGVTGESDEKQPAGDEAGAPRAYDLSSPE FT RVVRRRMQTLELINERFARHMRNVLLNFMRRNADITVGAIKILKYADFERNLPVPSNLN FT MIQMKPLRGTALFTYDPNLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRRLLNLTL FT ESYGKSWDPVYPIEFEYVRSEMHTKFASITGNNEVVVVSPFHIEFGATGGDLNICLPYS FT MIEPVRDLLTRPLQDTALEEVDQRWAQQLQSQVRSADIDLVAEFGHIPSSIGELMRMKT FT GDVLPIAVPETVTAHVDGVPLMEYGYGVFNGRYALRVQNLINYDDTDSNEAPDHD" FT misc_feature complement(216417..216641) FT /note="HMMPfam hit to PF01052, Surface presentation of FT antigens (SPOA) protein, score 0.0037" FT misc_feature complement(216699..217277) FT /note="HMMPfam hit to PF02154, Flagellar motor switch FT protein FliM, score 5.8e-95" FT CDS complement(217394..217966) FT /transl_table=11 FT /gene="fliL" FT /gene_synonym="fla AI" FT /gene_synonym="fla QI" FT /gene_synonym="cheC1" FT /locus_tag="BPP1504" FT /product="flagellar protein FliL" FT /note="ortholog of Bordetella pertussis (BX470248) BP1395" FT /db_xref="GOA:Q7WA82" FT /db_xref="InterPro:IPR005503" FT /db_xref="UniProtKB/TrEMBL:Q7WA82" FT /protein_id="CAE36806.1" FT /translation="MATTKTSTMPPRTTLPLRPGGAGRLLRPLLMLLVLALVVAASVAG FT TWYFMKRMQPPVAVPVQLGVGQPQATPMQFVAPPATPPVVPAPIFIPLEAFTVTLQNAD FT SERILHVGITLRVSDEQTRQRIEKYMPEVRSRILMVLSSQSPQAVQTLQGKTEMAHAIT FT EAVKRPFSPLPDGQYVTDALFTAFVVQ" FT misc_feature complement(217817..217882) FT /note="1 probable transmembrane helix predicted for BPP1504 FT by TMHMM2.0 at aa 28-50" FT misc_feature complement(217835..217966) FT /note="Signal peptide predicted for BPP1504 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.980) with cleavage site FT probability 0.665 between residues 44 and 45" FT CDS complement(218108..219424) FT /transl_table=11 FT /gene="fliK" FT /gene_synonym="flaE" FT /gene_synonym="flaR" FT /locus_tag="BPP1505" FT /product="flagellar hook-length control protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1398" FT /db_xref="GOA:Q7WA81" FT /db_xref="InterPro:IPR001635" FT /db_xref="UniProtKB/TrEMBL:Q7WA81" FT /protein_id="CAE36807.1" FT /translation="MSRNRTAAMTTATLPIPALTPAPGPAAQGGPAAAGKGPSFSQVLA FT RQQGGKPGEAGTPAAPGAQAGAPAQGPATQNPAGAGKPGKPGDTAALPVDGQQEPAAET FT AADAATLAALAAQTAPAPALPLQALEIAAEAAAVNAQVAAATQAAGAAARQPAHAALLA FT GQPAAPAAAGAPPADTAPAMPPALPQAAQPAVAAQAAVAASAPNAPAAETAATPPAAPS FT LPHPLPSTGGTPQDGGEAAEPPATAPAQPQPLAAAEHGAALHAAAQAHIAARQAVGNPA FT PASLPAAAQPLGLEVAAPVGSSQWGQDLGRQLVTISHDARQGHHTAELRLDPPDLGPLR FT VSINLHEGVASAAFVSVHAAVRQAVEAALPQLQQALAQAGISLGQTSVGDQSAQQGFAE FT QQGRGAGASGGSAAGADSETVVVAATPARNADALVDTFA" FT misc_feature complement(219338..219424) FT /note="Signal peptide predicted for BPP1505 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.992) with cleavage site FT probability 0.341 between residues 29 and 30" FT CDS complement(219430..219864) FT /transl_table=11 FT /gene="fliJ" FT /gene_synonym="flaO" FT /gene_synonym="flaS" FT /locus_tag="BPP1506" FT /product="flagellar protein FliJ" FT /note="ortholog of Bordetella pertussis (BX470248) BP1399" FT /db_xref="GOA:Q7WA80" FT /db_xref="InterPro:IPR018006" FT /db_xref="UniProtKB/TrEMBL:Q7WA80" FT /protein_id="CAE36808.1" FT /translation="MPSQLPLDMLIGLAKDSTDEAARELGRLSAERNNAEQQFNMLQDY FT RQDYLQRMQSGMSAADCHNYQRFIATLDDAIGQQRHVLHRAEAHLNDGRLNWQQQKRKL FT NSFDTLAQRESRTQALLEARREQRVNDEYSARLVRRQAGF" FT misc_feature complement(219436..219864) FT /note="HMMPfam hit to PF02050, Flagellar FliJ protein, FT score 4.5e-10" FT CDS complement(219857..221332) FT /transl_table=11 FT /gene="fliI" FT /gene_synonym="fla AIII" FT /gene_synonym="flaC" FT /locus_tag="BPP1507" FT /product="flagellum-specific ATP synthase FliI" FT /EC_number="3.6.3.14" FT /note="ortholog of Bordetella pertussis (BX470248) BP1400" FT /db_xref="GOA:Q7WA79" FT /db_xref="InterPro:IPR020005" FT /db_xref="UniProtKB/TrEMBL:Q7WA79" FT /protein_id="CAE36809.1" FT /translation="MNPPALPLPADTAAVPVADRWQTQLQIGSIRAASTEPWLVSGRIT FT RAAGLVLHATGLRLPVGAACRIELARGHDHWADAEVVGFDGHTLYLMPQSDISGLPPGA FT RVVPAEPAVQRPVPLPRKAELNGNAKPQVGRHLPVGNAMLGRVVDGAGRPLDGLGPLAG FT AEQAPLTALPINPLSRAPIDSVLDVGVRAINGLLTVGRGQRMGLFAGSGVGKSVLLGMM FT ARYTRADIIVVGLIGERGREVKEFIEHNLGPEGLARSVVVAAPADVSPLLRLQGASYAT FT RLAEHFRDQGLDVLLIMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPALVERTG FT MGAPSPNGKAGSITAFYTVLAEGDDQQDPIADSARAILDGHVVLSRHLAEAGHYPAIDI FT EASISRAMTSLITTEQFQQVRRFKQILSRYQRNRDLISVGAYVAGADPQLDDAIARYPR FT LEAYLQQNIGDSVDYGTAIDQLQRSLETREAYA" FT misc_feature complement(220103..220930) FT /note="HMMPfam hit to PF00006, ATP synthase alpha/beta FT family, nucleotide-binding domain, score 1.3e-131" FT misc_feature complement(220121..220150) FT /note="PS00152 ATP synthase alpha and beta subunits FT signature." FT misc_feature complement(220685..220708) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(221329..222084) FT /transl_table=11 FT /gene="fliH" FT /gene_synonym="fla BIII" FT /gene_synonym="fla AII.3" FT /locus_tag="BPP1508" FT /product="flagellar assembly protein FliH" FT /note="ortholog of Bordetella pertussis (BX470248) BP1401" FT /db_xref="GOA:Q7WA78" FT /db_xref="InterPro:IPR018035" FT /db_xref="UniProtKB/TrEMBL:Q7WA78" FT /protein_id="CAE36810.1" FT /translation="MSEALAREPAALPRSAAWRRWQMLSFDEPAEAETPEPAALEPEPE FT PAPDPEELLREWRATAERAGHAAGHQAGQEQGQREGYAAGHAQGLAAGRAEGHAEGLAQ FT GREEARQQAERLHALAQACAASVARLEDNMGQSLLTLALDIAGQVLRTALAEHPETMVA FT AVREVLHINPATGAAMRLWVHPDDLELVRTHLADELNEANWRLQADESITRGGCRTETA FT YGDVDATLQARWRRVAASLGRSAAWEETA" FT misc_feature complement(221371..222084) FT /note="HMMPfam hit to PF02108, Flagellar assembly protein FT FliH, score 9.2e-11" FT CDS complement(222077..223087) FT /transl_table=11 FT /gene="fliG" FT /gene_synonym="fla BII" FT /gene_synonym="fla AII.2" FT /locus_tag="BPP1509" FT /product="flagellar motor switch protein FliG" FT /note="ortholog of Bordetella pertussis (BX470248) BP1402" FT /db_xref="GOA:Q7WA77" FT /db_xref="HSSP:1QC7" FT /db_xref="InterPro:IPR000090" FT /db_xref="UniProtKB/TrEMBL:Q7WA77" FT /protein_id="CAE36811.1" FT /translation="MKNDGKPLDGMTRSAVLMMSLGEDAAAEVFKYLSAREVQQVGAAM FT ASLKQVTRGDVAVVLEEFRQEADQFMAVTLGSDDYIRTVLTKALGSDRAAGLIEDILEA FT GEGGSGIDALNWLDPHTVAELIGDEHPQIIATILVHLERDRAASVLAMLSERMRNDVML FT RIATFGGVQPAALSELTDVLNSVLAGQGAKRSKMGGVRTAAEILNMMNSSQEEAVVESL FT RERDSDLAQKIIDEMFVFDNLLDVEDRAVQLILKEIDNDTLMVALKGAGDELRNKFLRN FT MSSRAAEMLREDLEAQGPIRMSKVEGEQKKILQIARRLAESGQIVLGTQGDDAYV" FT misc_feature complement(222104..222433) FT /note="HMMPfam hit to PF01706, FliG C-terminal domain, FT score 3.4e-52" FT CDS complement(join(223077..223892,223896..224753)) FT /pseudo FT /transl_table=11 FT /gene="fliF" FT /gene_synonym="fla BI" FT /gene_synonym="fla AII.1" FT /locus_tag="BPP1510" FT /product="flagellar M-ring protein FliF (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP1403" FT /db_xref="PSEUDO:CAE36812.1" FT misc_feature complement(join(223302..223367,224613..224669)) FT /note="2 probable transmembrane helices predicted for FT BPP1510 by TMHMM2.0 at aa 28-47 and 462-484" FT variation complement(223893..223895) FT /note="In-frame TAG stop codon in parapertussis; CAG in FT pertussis" FT misc_feature complement(224067..224693) FT /note="HMMPfam hit to PF01514, Secretory protein of FT YscJ/FliF family, score 3.3e-77" FT misc_feature complement(224622..224753) FT /note="Signal peptide predicted for BPP1510 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.814) with cleavage site FT probability 0.509 between residues 44 and 45" FT CDS 225066..225398 FT /transl_table=11 FT /gene="fliE" FT /gene_synonym="flaN" FT /gene_synonym="fla AI" FT /locus_tag="BPP1511" FT /product="flagellar hook-basal body complex protein FliE" FT /note="ortholog of Bordetella pertussis (BX470248) BP1404" FT /db_xref="GOA:Q7WA76" FT /db_xref="InterPro:IPR001624" FT /db_xref="UniProtKB/TrEMBL:Q7WA76" FT /protein_id="CAE36813.1" FT /translation="MAVSGLSGIESMLSQMRAVVRAAQSGGATEAELAPGPSGFAAELQ FT RSIRRVSQAQNAASDQAKAFELGAPGISLNDVMIDLQKASLGFQTSVQVRNRLVAAYKE FT ISSMAV" FT misc_feature 225084..225392 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02049, Flagellar hook-basal body FT complex protein FliE, score 6.7e-20" FT CDS complement(225412..225807) FT /transl_table=11 FT /locus_tag="BPP1512" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1405" FT /db_xref="UniProtKB/TrEMBL:Q7WA75" FT /protein_id="CAE36814.1" FT /translation="MTAQDQIVVLTQSDQIRSTLQELRHPDCQIVISGIDQRPWPVRIL FT GPDAKDGYFFWRPLDLACPDSVMLARMADEDEPPLAFHAQTADGARIHFCVDSPVTLRF FT GDGSIAVLSLFPSAVRHTCARPPQAPA" FT CDS complement(225817..226131) FT /transl_table=11 FT /locus_tag="BPP1513" FT /product="conserved hypothetical protein" FT /product="putative flagellar protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1406" FT /db_xref="GOA:Q7WA74" FT /db_xref="InterPro:IPR006135" FT /db_xref="UniProtKB/TrEMBL:Q7WA74" FT /protein_id="CAE36815.1" FT /translation="MNTPAPPAADDASRPVAVALSYDGGEAAPRVVAKGYGQLADTIVR FT TAREHGLHVHESRELVGLLMQVDLDAHIPPQLYTAVAELLAWLYRLEARELPEVLAPQA FT " FT CDS complement(226128..227399) FT /transl_table=11 FT /locus_tag="BPP1514" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1407" FT /db_xref="UniProtKB/TrEMBL:Q7WA73" FT /protein_id="CAE36816.1" FT /translation="MSVGPPALGSILVQRLDAVLGTTMSAQSNLVSGARPDAVAQPGEA FT ARPGASQTATRDPRQAVQTGGERGARQGAAGVDAKTAAALALAARGLQTSTGTTASAPT FT TLGQTARTILALLAQYPGQAPAVSARAPLWTPPAQDGASPPAGGQPAAAAPNAPAQASA FT AAGGAASTPSRPEAAQAGAASARTPAQTPPATLAALAGRAVLPAAPALAQALRQTLQAS FT GLFYESHLSDLAFGKRSVQQLQAEPQARLPAAGAEPAATPRAPENATPARALPAAEAAP FT PGQPATHTPGAPVPGIHQDATLLVRQQLDVLANQMLAWQGQAWPGTPMEWEVAREHGDD FT AAGQPGTHWATRLKLNLPRLGTVEARLNLAANQLVLHVVAPDSAAEIGAAADALRQQLS FT AAGLTLTNLSVDAIGAPGFDLPEA" FT CDS complement(227396..227776) FT /transl_table=11 FT /gene="fliT" FT /locus_tag="BPP1515" FT /product="flagellar protein FliT" FT /note="ortholog of Bordetella pertussis (BX470248) BP1408" FT /db_xref="GOA:Q7WA72" FT /db_xref="InterPro:IPR008622" FT /db_xref="UniProtKB/TrEMBL:Q7WA72" FT /protein_id="CAE36817.1" FT /translation="MSSRPQREKSMTALTQHAPVLEIYQDIANLTSRMLAAANASNWDL FT VLNHGQEYVCLVERLRELEPGEPLDEAARGMKFDLLVRILENDAAVRDLALPQLARLSD FT LLGRMKRQQSLLATYSGKANGT" FT CDS complement(227794..228222) FT /transl_table=11 FT /gene="fliS" FT /locus_tag="BPP1516" FT /product="flagellar protein FliS" FT /note="ortholog of Bordetella pertussis (BX470248) BP1409" FT /db_xref="GOA:Q7WA71" FT /db_xref="InterPro:IPR003713" FT /db_xref="UniProtKB/TrEMBL:Q7WA71" FT /protein_id="CAE36818.1" FT /translation="MTYAARRPTGSYSVKSYSYIGLETQVMSATPERLITLLYAGARAA FT IAQARLHLEAGRIVERGQAIGKAIRIVDEGLKLGLNQDAGGEVAANLARLYDYITRTLL FT TANLKADKEQLDIADRLLADLSEAWQASVDHPAPAVPA" FT misc_feature complement(227815..228189) FT /note="HMMPfam hit to PF02561, Flagellar protein FliS, FT score 9.3e-23" FT CDS complement(228230..229603) FT /transl_table=11 FT /gene="fliD" FT /gene_synonym="flbC" FT /gene_synonym="flaV" FT /locus_tag="BPP1517" FT /product="flagellar hook-associated protein 2" FT /note="ortholog of Bordetella pertussis (BX470248) BP1410" FT /db_xref="GOA:Q7WA70" FT /db_xref="InterPro:IPR003481" FT /db_xref="UniProtKB/TrEMBL:Q7WA70" FT /protein_id="CAE36819.1" FT /translation="MATISSLGSSGLELEGILEKLQAAEEKKLTLITARQASYETRISA FT YSKIQAAVEAVQKAAATLGSIDTLSAVKAVVSGDGLSVKTAAGAVPGQYTVNIDKLATA FT QNLQSGELDSRTDKHGTGGSIEIVQKDGTTTTVTLGEDTSLNGIVKAINGTDGLDVRAT FT VISDGNGKHYLMLNNKTEGTEAAVTRITVSGNQEVADILDFDAANAGASNLTVQLAAQK FT AELTINGIPVVSDTNTVETAIDGLTLTLTKQTAAPLTVTVSSDPSVAATAVNDFVKAYN FT GLQTTIADLTAFDVKAEKQSALTGDGTTRNIQSAIAAALRVATGEGTLRTLSQLGITTD FT PKTGSLKTDTEKLEAALRDNPADVARIFSGPFGLGEKVKLATEQILGDEGSIKIRQEGL FT EETLESLQNQYDRQKLSIAATIEAYRKQFVQLDVFVTQMNNTSNYLSQQFAALSGTKK" FT misc_feature complement(228284..229579) FT /note="HMMPfam hit to PF02465, Flagellar hook-associated FT protein 2, score 1.2e-58" FT CDS complement(229744..230106) FT /transl_table=11 FT /locus_tag="BPP1518" FT /product="putative flagellar protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1411" FT /db_xref="GOA:Q7WA69" FT /db_xref="InterPro:IPR005186" FT /db_xref="UniProtKB/TrEMBL:Q7WA69" FT /protein_id="CAE36820.1" FT /translation="MAVSPINAAAPALVSAAPAPVPAQPAAAAAANGGGAQSATQDQYG FT APKLPMDRALEEINAQLKAWSTQLQFEIDPDVHQVVVSIVDAETGDVLRTIPSEAVIRI FT AKMIVKMQGNAVETTA" FT misc_feature complement(229750..230085) FT /note="HMMPfam hit to PF03646, FlaG protein, score 0.00021" FT misc_feature complement(230023..230106) FT /note="Signal peptide predicted for BPP1518 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.534 between residues 28 and 29" FT CDS 230596..231903 FT /transl_table=11 FT /gene="folC" FT /gene_synonym="dedC" FT /locus_tag="BPP1519" FT /product="FolC bifunctional protein [includes: FT folylpolyglutamate synthase and dihydrofolate synthase]" FT /EC_number="6.3.2.17" FT /note="ortholog of Bordetella pertussis (BX470248) BP1412" FT /db_xref="GOA:Q7WA68" FT /db_xref="HSSP:1FGS" FT /db_xref="InterPro:IPR018109" FT /db_xref="UniProtKB/TrEMBL:Q7WA68" FT /protein_id="CAE36821.1" FT /translation="MSTSRPDASADLPAWLQYLESIHAKAIDLGLDRVRQVAGRLDLSL FT DGVKFMVGGTNGKGSTCAMLESILLAAGYRVGLYTSPHLIDFNERARINGEIASDAALV FT QQFEAVEAARGDISLTYFEFTTLAILRLFAQSRLDAVVLEVGLGGRLDAVNIVDADCSI FT ITSIDLDHTDWLGDTREKIGFEKAHIYRAGRPAICADPVPPQSLLDHVQAIGADLWLLG FT RDYNYSGDRQQWAYGGRAQRRNALAYPALRGANQLLNAAAALAALEAVRDRLPVPQQAV FT RVGLLQASLPGRFQILPGQPTVILDVAHNPHAAAVLAQNLDNMGFHPYTHAVFGMLADK FT NVDGVIARLGSRVDHWYCAGLPGPRGLDGQALADHVRQVLPEAEGAAETPTVQACADPA FT AAYAAAREKAGEGDRIIVFGSFLTVASVLQALGRKI" FT misc_feature 230635..231444 FT /note="HMMPfam hit to PF01225, Mur ligase family, catalytic FT domain, score 1.9e-14" FT misc_feature 230743..230814 FT /note="PS01011 Folylpolyglutamate synthase signature 1." FT misc_feature 231463..231717 FT /note="HMMPfam hit to PF02875, Mur ligase family, glutamate FT ligase domain, score 0.0015" FT CDS 231964..232794 FT /transl_table=11 FT /locus_tag="BPP1520" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1413" FT /db_xref="InterPro:IPR007730" FT /db_xref="UniProtKB/TrEMBL:Q7WA67" FT /protein_id="CAE36822.1" FT /translation="MGLFTSKDSASETQSSRPRPSVSSEAQAAELRARARRRLAGAVAL FT VLAAVIVLPMILDSEPVPVDSDIPIRVPDRNSAFQPTVNDPQAAAPQPEQPAPQAPAGT FT PEAGAPQPPALASAPPQTPPPGQTPAQPQTPPAAQPPATPPQQAATPPAAPKPEAKPEP FT KPAKPAAPARSDDGARAIALLEGRSPPPAQPKPAANGNFVLQVASYTTQADAQARRGKL FT HQAGVTNAFVEQASINGKQQYRLRVGPFPSREAAQAAQARLRTLGYDNGFIAAQ" FT misc_feature 232078..232134 FT /note="1 probable transmembrane helix predicted for BPP1520 FT by TMHMM2.0 at aa 39-57" FT CDS 232791..233279 FT /transl_table=11 FT /gene="cvpA" FT /gene_synonym="dedE" FT /locus_tag="BPP1521" FT /product="colicin V production protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1414" FT /db_xref="GOA:Q7WA66" FT /db_xref="InterPro:IPR003825" FT /db_xref="UniProtKB/TrEMBL:Q7WA66" FT /protein_id="CAE36823.1" FT /translation="MTGFDFVVLTILAVSAVLGLVRGLLKEILSLLAYLLAFVAAIWWG FT PTVYVWLEPYIETALLRMGIAYAVVFIIVLLAVGLVNMTLAALIRTTGLTPADHGLGAM FT FGLARGLVLVLVLVALAGFTPLPQEDWWRDAMFSHSATEAVRQVKSWLPPSLATWLPY" FT misc_feature 232797..233252 FT /note="HMMPfam hit to PF02674, Colicin V production FT protein, score 4.4e-30" FT misc_feature join(232806..232865,232878..232946,232989..233057, FT 233091..233159) FT /note="4 probable transmembrane helices predicted for FT BPP1521 by TMHMM2.0 at aa 6-25, 30-52, 67-89 and 101-123" FT CDS 233321..234841 FT /transl_table=11 FT /gene="purF" FT /locus_tag="BPP1522" FT /product="amidophosphoribosyltransferase" FT /EC_number="2.4.2.14" FT /note="ortholog of Bordetella pertussis (BX470248) BP1415" FT /db_xref="GOA:Q7WA65" FT /db_xref="HSSP:1ECB" FT /db_xref="InterPro:IPR002375" FT /db_xref="UniProtKB/TrEMBL:Q7WA65" FT /protein_id="CAE36824.1" FT /translation="MCGIVGVIGRGPVNQLLYDSLLLLQHRGQDAAGIATLQGNHFNMY FT KAHGLVRDVFRTRNMRALPGTSGVGQVRYPTAGSSASEEEAQPFYVNAPFGIMFAHNGN FT LTNWRELRESLYRADRRHINTNSDSEVLLNVLAHELQSAASGVSLDDDTIFRAVSAVHQ FT RVKGAYAVVAQISGYGMLAFRDPHGIRPLCIGRQETEEGVEWMAASESVALEGSGFAFV FT RDVEPGEAIFVDLDGRMTSRQCADNAQLVPCIFEYVYFARPDSLIDGVSVYDARLRMGE FT YLADKVARSMRLGDIDVVMPIPDSSRPAAMQLAHRLGLDYREGLIKNRYVGRTFIMPGQ FT AVRRKSVRQKLNAIGMEFKGKNVLLVDDSIVRGTTSREIVDMARAAGANKVYFASAAPP FT VRFPNVYGIDMPTQKELIATGRTDDEIARTIGADALIYQDLQDMQQAVRDINPRLSRFE FT ASCFDGEYVTGDITAEYLARLGQSRDSSAGDEEAGGLQFNMGYAANDA" FT misc_feature 233321..233338 FT /note="PS00443 Glutamine amidotransferases class-II active FT site." FT misc_feature 233324..233905 FT /note="HMMPfam hit to PF00310, Glutamine amidotransferases FT class-II, score 4.9e-65" FT misc_feature 234089..234580 FT /note="HMMPfam hit to PF00156, Phosphoribosyl transferase FT domain, score 3.9e-12" FT misc_feature 234407..234445 FT /note="PS00103 Purine/pyrimidine phosphoribosyl FT transferases signature." FT CDS complement(234885..235361) FT /transl_table=11 FT /gene="dsbB" FT /gene_synonym="roxB" FT /locus_tag="BPP1523" FT /product="disulfide bond formation protein B" FT /note="ortholog of Bordetella pertussis (BX470248) BP1416" FT /db_xref="UniProtKB/TrEMBL:Q7WA64" FT /protein_id="CAE36825.1" FT /translation="MTRYRERLLFLIAILCFGAVGLALLSQHVFDMPPCAWCVLQRLIY FT LCIGVVALAGALAGAIAARLAAMLAALLAICGIVAAWYQYSVAAKMLSCDQTFADRFMS FT ATGLDGALPWLFGIYATCMDATVAVLGIEYAIWSLALFVIVLALALPAALRRNA" FT misc_feature complement(join(234903..234959,234966..235031, FT 235098..235163,235179..235244,235275..235340)) FT /note="5 probable transmembrane helices predicted for FT BPP1523 by TMHMM2.0 at aa 7-29, 39-61, 66-88, 110-132 and FT 134-153" FT misc_feature complement(235293..235361) FT /note="Signal peptide predicted for BPP1523 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.992) with cleavage site FT probability 0.573 between residues 23 and 24" FT CDS complement(235412..236125) FT /transl_table=11 FT /gene="marC" FT /locus_tag="BPP1524" FT /product="putative multiple antibiotic resistance protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1416A" FT /db_xref="InterPro:IPR002771" FT /db_xref="UniProtKB/TrEMBL:Q7WA63" FT /protein_id="CAE36826.1" FT /translation="MPYNEYLLVFGRSFFFALATLLPFLNPPAITPIFWTLTEGASKQT FT LAQLSKRVAINVALMMIGAMIAGNVVLSFFGISLAIVRVGGGMLVIYSAWRLVNSPDAD FT TSRHAQMAESFTPEMAQARAFYPLTFPISCGPGTIAACITVGASLRDENHMLSLARLAG FT SLPGVALVAFTLFICLRFAAQMLHRLGDNGTAVFMRLSAFIMLCLGVQIFWSDASELLL FT DVMRQIMQPIAAPPA" FT misc_feature complement(235463..236095) FT /note="HMMPfam hit to PF01914, MarC family integral FT membrane protein, score 1e-19" FT misc_feature complement(join(235481..235537,235577..235642, FT 235688..235753,235832..235888,235901..235966, FT 236015..236080)) FT /note="6 probable transmembrane helices predicted for FT BPP1524 by TMHMM2.0 at aa 15-37, 53-75, 79-98, 124-146, FT 161-183 and 196-215" FT CDS complement(236164..238761) FT /transl_table=11 FT /gene="glnD" FT /locus_tag="BPP1525" FT /product="[protein-PII] uridylyltransferase" FT /EC_number="2.7.7.59" FT /note="ortholog of Bordetella pertussis (BX470248) BP1417" FT /db_xref="GOA:Q7WA62" FT /db_xref="InterPro:IPR013546" FT /db_xref="UniProtKB/Swiss-Prot:Q7WA62" FT /protein_id="CAE36827.1" FT /translation="MPHVDLNPLKQRMQAARAAAVAQFRQHPRPDMLLTELRRIVDQAL FT RELVKLCPLPAGATLAAVGGYGRGELYPHSDVDLLILLPQPPSAADARAVEALVAALWD FT LGLEPGHSVRTLEDCEREARGDITVETALLESRWLAGSRTLMKRLDSAMQARLDAAVFF FT QAKRVEMQQRHARYQDTPYALEPNCKESPGGLRDLQVILWMARAAGFGHSWREVAQAGL FT LTSSEARDLRRAEQAFKRLRIELHLLTGRREDRVLFDLQPGLAAVYGIASTATRRASEL FT LMQRYYWAARLVTQLNVILVQNIEERLFPRPDSDARLIDDDFRNLRERLDIVREDGFER FT NPTLLLRAFLVMQQHPELIGMSARTLRAIWHSRHRIDAQFRRNPVNRKLFLQILQQPRG FT IVHELRRMTMLNILPRYLPVFRRIVGQMQHDLFHVYTVDQHTLAVVRNLRRFTMPEHAQ FT EYPLASQLIAGLDRHWLLYVAALFHDIAKGRGGDHSELGAREVRRFAQDHGLDPADAEL FT VEFLVRHHLLMSAVAQKRDLSDPQVVRDFAAQVGDERRLAALYLLTVADIRGTSPRVWN FT AWKGKLLEDLFRLALAALGGAHADAHTVLTERKDEAARLTRLAGLRDDAREAFWNQLDI FT AYFLRHDASEIAWHTRHLYYQVAPDEPVVRVRPTEHGEGLQVMVYTRDAPDLFVTTCGY FT FDAKSLSVQDARVHTTRHGWALDSFIVLAPEGFADLRAQATLVEHELAERLRDPHAARH FT AHAPRRLPHSHARRSRVFPVMPQAELSPDERSQSWRLSVTATDRPGLLYALARVFAEHG FT VDLIMAKIMTLGERVEDVFIVSGSALERPRSQMQFERAILDALAGDEPRQQAA" FT misc_feature complement(236191..236400) FT /note="HMMPfam hit to PF01842, ACT domain, score 0.00012" FT misc_feature complement(236527..236739) FT /note="HMMPfam hit to PF01842, ACT domain, score 18" FT misc_feature complement(237049..237453) FT /note="HMMPfam hit to PF01966, HD domain, score 3.7e-10" FT misc_feature complement(238360..238653) FT /note="HMMPfam hit to PF01909, Nucleotidyltransferase FT domain, score 3.6e-08" FT CDS complement(238791..239612) FT /transl_table=11 FT /gene="map" FT /locus_tag="BPP1526" FT /product="methionine aminopeptidase" FT /EC_number="3.4.11.18" FT /note="ortholog of Bordetella pertussis (BX470248) BP1418" FT /db_xref="GOA:Q7WA61" FT /db_xref="HSSP:1C24" FT /db_xref="InterPro:IPR001714" FT /db_xref="UniProtKB/TrEMBL:Q7WA61" FT /protein_id="CAE36828.1" FT /translation="MGIVTDPADLAKMRAACQDAAKILDFITPYVKPGVTTGELDKLCL FT AYLTDELKVKSATIGYAPPGYPPFTGAICTSVNHQVCHGIPGDKVLKNGDSLNIDVTII FT KDGWFGDTSRMYHVGEPSILSRRLTDITYDCMWKGIEQVRNGATLGDIGHAIQKYAEAQ FT GFSVVREFCGHGIGQRFHEDPQVLHYGKPGTGVKLVTGMLFTVEPMINAGRREIRQLAD FT GWTVVTRDHSLSAQWEHTVLVTDTGYEVLTVSPGMPAPPAFVTRPVEIPAL" FT misc_feature complement(238866..239606) FT /note="HMMPfam hit to PF00557, metallopeptidase family M24, FT score 2.5e-73" FT misc_feature complement(239046..239102) FT /note="PS00680 Methionine aminopeptidase subfamily 1 FT signature." FT CDS 240334..241083 FT /transl_table=11 FT /gene="rpsB" FT /locus_tag="BPP1527" FT /product="30S ribosomal protein S2" FT /note="ortholog of Bordetella pertussis (BX470248) BP1419" FT /db_xref="GOA:Q7WA60" FT /db_xref="HSSP:1VI6" FT /db_xref="InterPro:IPR018130" FT /db_xref="UniProtKB/Swiss-Prot:Q7WA60" FT /protein_id="CAE36829.1" FT /translation="MSLMREMLEAGVHFGHQTRYWNPKMAPYIFGHRNKIHIINLEQTV FT AKYQEASKFVKQLVARGGNILFVGTKRAARELVATEAARCGMPYVDARWLGGMLTNFKT FT VKSSIKRLKDMEAMVADGGFERMTKKEGLLFQRELDKLNKSIGGIKDMNGLPDALFVID FT VGYHKIAVAEAKVLGIPVVAVVDTNHSPDGIDHVIPGNDDSARAIALYAKGMADAVLEG FT REQNINGLVEEIGEGQEEFVEVQDNQA" FT misc_feature 240343..240378 FT /note="PS00962 Ribosomal protein S2 signature 1." FT misc_feature 240352..241002 FT /note="HMMPfam hit to PF00318, Ribosomal protein S2, score FT 3.5e-100" FT CDS 241216..242145 FT /transl_table=11 FT /gene="tsf" FT /locus_tag="BPP1528" FT /product="elongation factor Ts" FT /note="ortholog of Bordetella pertussis (BX470248) BP1420" FT /db_xref="GOA:Q7WA59" FT /db_xref="InterPro:IPR000449" FT /db_xref="UniProtKB/Swiss-Prot:Q7WA59" FT /protein_id="CAE36830.1" FT /translation="MSRFMLAGPCLSEFGANMAEITAALVKELREKTDAPMMECKKALT FT EAEGDLARAEEILRVKLGNKASKAAARVTAEGLIGLYIAADGKQGAVIEVNCETDFVAK FT NTDFIDFINKLAELVATQNPGDVAALSALPFGEGTVETTRTALVGKIGENISVRRFERI FT QTPNSLASYVHGGKIGVLVEFSGAEEVGKDLAMHIAATKPKALNADGVNAEDIAAERSV FT AEQKAAESGKPAEIVAKMVEGSVQKFLKEVTLLSQPFVKNDKQTIEQMLKEKGASITKF FT VLFVVGEGIEKKTADFASEVAAAAAGRA" FT misc_feature 241216..241272 FT /note="Signal peptide predicted for BPP1528 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.750) with cleavage site FT probability 0.575 between residues 19 and 20" FT misc_feature 241276..241398 FT /note="HMMPfam hit to PF00627, UBA/TS-N domain, score FT 0.002" FT misc_feature 241435..242079 FT /note="HMMPfam hit to PF00889, Elongation factor TS, score FT 1.1e-87" FT misc_feature 241495..241527 FT /note="PS01127 Elongation factor Ts signature 2." FT CDS 242297..242959 FT /transl_table=11 FT /gene="pyrH" FT /gene_synonym="smbA" FT /locus_tag="BPP1529" FT /product="uridylate kinase" FT /EC_number="2.7.4.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP1421" FT /db_xref="GOA:Q7WA58" FT /db_xref="InterPro:IPR015963" FT /db_xref="UniProtKB/Swiss-Prot:Q7WA58" FT /protein_id="CAE36831.1" FT /translation="MGEDAFGINRSTIVRMTDEIAEVAALGVELAIVIGGGNIFRGVAP FT GAQGMDRATADYMGMMATIMNALALQDALKHKGVDTRVQSALNIDQVVEPYIRPKALRY FT LEEGKVVIFAAGTGNPFFTTDTAAALRGAEIGAEIVLKATKVDGIYSADPNKDPTATRY FT ARISFDEAIVRRLEVMDATAFALCRDQKLPIKVFSINKFGALKRAVSGEDEGTLVHV" FT misc_feature 242297..242890 FT /note="HMMPfam hit to PF00696, Amino acid kinase family, FT score 4.8e-46" FT CDS 242974..243534 FT /transl_table=11 FT /gene="frr" FT /gene_synonym="rrf" FT /locus_tag="BPP1530" FT /product="ribosome recycling factor" FT /note="ortholog of Bordetella pertussis (BX470248) BP1422" FT /db_xref="GOA:Q7WA57" FT /db_xref="InterPro:IPR015998" FT /db_xref="UniProtKB/Swiss-Prot:Q7WA57" FT /protein_id="CAE36832.1" FT /translation="MSVADIRKSAETRMAKSLETLKASLAKIRTGRAHTGILDHVQVEY FT YGSPVPISQVANVNLVDARTISVQPYEKSMAGPIEKAIRESDLGLNPVSMGETIRVPMP FT ALTEERRRDLTKVVKSEGEDAKVAVRNLRREANEALKKLVKDKEISEDDERRAQDDVQK FT LTDRAVGDIDKMIVQKEAEIMTV" FT misc_feature 243031..243525 FT /note="HMMPfam hit to PF01765, Ribosome recycling factor, FT score 6.6e-85" FT CDS 243572..244465 FT /transl_table=11 FT /gene="uppS" FT /gene_synonym="rth" FT /locus_tag="BPP1531" FT /product="undecaprenyl pyrophosphate synthetase" FT /EC_number="2.5.1.31" FT /note="ortholog of Bordetella pertussis (BX470248) BP1423" FT /db_xref="GOA:Q7WA56" FT /db_xref="InterPro:IPR018520" FT /db_xref="UniProtKB/Swiss-Prot:Q7WA56" FT /protein_id="CAE36833.1" FT /translation="MSISESVPYAPSRPRWSCRIWRRRDGAGFCNTFLLAALRQAPAMA FT LSSTQAIPETGDIPRHVAIIMDGNGRWATRRHLPRTAGHAKGVHAVRRVVEACGRRGVR FT YLTLFAFSSENWRRPADEVSLLMRLFVQALEREVDKLQDQGVRLHVVGDLSAFEPKLQE FT LIAQAQERTEHNDRLHLTVAANYGGRWDILQATRAMLRADPGLAQDPDRIDEARLAEHL FT SMAWAPEPDLFIRTGGEQRISNFLVWQLAYAEFYFTEQFWPDFGADELDAAFEWYRTRE FT RRFGRTSAQLRGGAKR" FT misc_feature 243764..244429 FT /note="HMMPfam hit to PF01255, Putative undecaprenyl FT diphosphate synthase, score 4.1e-98" FT CDS 244485..245342 FT /transl_table=11 FT /gene="cdsA" FT /gene_synonym="cds" FT /locus_tag="BPP1532" FT /product="phosphatidate cytidylyltransferase" FT /EC_number="2.7.7.41" FT /note="ortholog of Bordetella pertussis (BX470248) BP1424" FT /db_xref="GOA:Q7WA55" FT /db_xref="InterPro:IPR000374" FT /db_xref="UniProtKB/TrEMBL:Q7WA55" FT /protein_id="CAE36834.1" FT /translation="MLGQRIITAAVLLAVLALTLALANPWWFVALLALGAACAAWEWLR FT LTVRQPPSGALCVGLAAALLAAMLAMAQAWIQGGVSGLRLEVWVGYWLTPAIVAVWLLG FT AGTAVARGRADAPAASLGWTLFAIPAVLAAWSVLALMYLSRGGAYVVSLLALVWVADIA FT AYFAGRAFGKRKLAPRVSPGKTVAGAVAGVLGAVAWIALSSQWDGTYGQALVERWSWWL FT ALPAAALLGVVSIVGDLFESLLKRRAGRKDSSALLPGHGGVYDRIDAILPVAPLALLMS FT GVLF" FT misc_feature 244485..244553 FT /note="Signal peptide predicted for BPP1532 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.637 between residues 23 and 24" FT misc_feature join(244497..244550,244560..244628,244647..244715, FT 244743..244811,244845..244913,244926..244985, FT 245022..245090,245148..245216) FT /note="8 probable transmembrane helices predicted for FT BPP1532 by TMHMM2.0 at aa 5-22, 26-48, 55-77, 87-109, FT 121-143, 148-167, 180-202 and 222-244" FT misc_feature 244923..245336 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01148, Phosphatidate FT cytidylyltransferase, score 3.4e-51" FT misc_feature 245208..245288 FT /note="PS01315 Phosphatidate cytidylyltransferase FT signature." FT CDS 245339..246538 FT /transl_table=11 FT /gene="dxr" FT /locus_tag="BPP1533" FT /product="1-deoxy-D-xylulose 5-phosphate reductoisomerase" FT /EC_number="1.1.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP1425" FT /db_xref="GOA:Q7WA54" FT /db_xref="InterPro:IPR013512" FT /db_xref="UniProtKB/Swiss-Prot:Q7WA54" FT /protein_id="CAE36835.1" FT /translation="MTRFQRVAVLGSTGSIGDSTLDVIARHPDRLGVYALSAYSRMDKL FT AAQAAACGAAVVVVPDDAAAARFRAAWRGKAAMPEVRVGPRTLAETAAAPECTTVMAAI FT VGAAGLPAALAAAQAGKRVLLANKEALVAAGSLFMAAVRENGAELLPIDSEHNAIFQCM FT PQGARAAAPTAPAPGVRRLLLTASGGPFRRQDPADLHEVTPAQACAHPNWSMGRKISVD FT SATMLNKGLEVIEAHWLFAMPSERIDVLIHPQSVVHSMVEYDDGSVLAQLGQPDMRTPI FT AYGLGFPERLASGVGLLDLTRWGRLDFEQPDLQRFPCLALSFAALRAGQPACVALNAAN FT EVAVAAFLEGRLRYTWVARVIEAVLEWQAKQASVTLTSLDDVLDLDARARSFAGNLGLA FT " FT misc_feature 245357..246517 FT /note="HMMPfam hit to PF02670, 1-deoxy-D-xylulose FT 5-phosphate reductoisomerase, score 2.2e-173" FT CDS 246578..247912 FT /transl_table=11 FT /locus_tag="BPP1534" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1426" FT /db_xref="GOA:Q7WA53" FT /db_xref="InterPro:IPR006025" FT /db_xref="UniProtKB/TrEMBL:Q7WA53" FT /protein_id="CAE36836.1" FT /translation="MLFTLLAFVVALGTLITFHELGHYWIARLCGVRVLRFSVGFGRVL FT ARRTDRHGTEWAISAIPLGGYVKMQDDPPAGASAAEAARSFNAQPVGRRIAIVAAGPLF FT NLFLAVVLYAGLNLAGTEVPAPVVGQPAAGTPAAQAGLMAGDRIEAVQGRAVDSWNDAR FT WRLLDVLSSQGEAQLEVRGPGGAARGLVLQVPGGNRLDPADGDPLAETGLRLAQPKPVV FT REVIAGGAGEQAGLRGGDLIVAAGQAADLDAGALVALIQRHAGQPLALTVQRGADRLTL FT TVVPRAESVQGQEVGRIGVQLGGDIPMVTVRYGVIDSVWRGAQRTWDTAWLSLRMMGRM FT VLGEVSWRNISGPVTIADYAGQTARIGLEAYIAYLALISISLGVLNLLPIPMLDGGHLL FT YYLVEIVKGSPVSDRWIDIGQRAGIGLLAGLMGLALFNDFARLFT" FT misc_feature join(246590..246658,246860..246928,247688..247756, FT 247829..247897) FT /note="4 probable transmembrane helices predicted for FT BPP1534 by TMHMM2.0 at aa 5-27, 95-117, 371-393 and FT 418-440" FT misc_feature 246623..246652 FT /note="PS00142 Neutral zinc metallopeptidases, zinc-binding FT region signature." FT misc_feature 247106..247402 FT /note="HMMPfam hit to PF00595, PDZ domain (Also known as FT DHR or GLGF), score 0.01" FT CDS 247965..250301 FT /transl_table=11 FT /locus_tag="BPP1535" FT /product="probable surface antigen" FT /note="ortholog of Bordetella pertussis (BX470248) BP1427" FT /db_xref="GOA:Q7WA52" FT /db_xref="InterPro:IPR016474" FT /db_xref="UniProtKB/TrEMBL:Q7WA52" FT /protein_id="CAE36837.1" FT /translation="MSLRRMFHHKKGVIPGLLAAALLAPALAHAFEPFVVRDIRVEGIQ FT RTDAGTVFGYLPVKVGEKFTDEEATEAVRRLYGTGFFSDVQIQTDNNVVVVVVQERPTI FT ASISFNGMREFDSKAITKSLAQVGFGEGRIFDQSMLERAEYELKEQYLAKGKYGVEVTA FT TVTPLPRNRVGVSFDVFEGEVAKIREIRVVGSKAFSEGELLDQFDLTTPGWLTWYTNTD FT KYSREKLEGDIERLRSFYLDQGYLEFTVEPPQVTISPDRKDIYITITVHEGEPYKVREV FT KLAGNLMGLDSEINNLVEIKSGEVFSAAKANNSAKAITDYLGDLGYAFANVNPNPQLDR FT AKHEADVTFYVDPSRRVYVRRIQIGGNTRTRDEVVRREMRQQEAAWYDAGDIKVSRDRV FT DRLGYFNEVNVKTDPVPGSPDQVDVNVDVKEKPTGIINLGVGYGSSEKAILSAGISEDN FT VFGSGTNLTLQLNTSKTNRAVVLSHTDPYFTKDGISRTTSAYYRVTEPWDNNDGDYRVK FT AMGLGMNFGVPISEYDRIFLGGTFERNQIDLYNNSPQAYRDFVDQYGDSTNALIFNTGW FT SKDTRDSALAPTKGAYTRLKGDFSTMDLKYYLLTAQQQYYLPLGRSYTLALNGMIDYGR FT SYGGLDYPVIKNVYAGGIGTVRGYEGASLGPRDRLTGDYIGGSRRMVANAQLYLPFPGA FT SKDRTLRWFVFTDAGQVAAGSGMSCTAGKPGSEVEDPCGWRFSAGIGLSWQSPLGPLQL FT SYARPLNSKSGDDTQAFQFQIGTGF" FT misc_feature 247965..248054 FT /note="Signal peptide predicted for BPP1535 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.755 between residues 30 and 31" FT misc_feature 247992..250295 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01103, Bacterial surface antigen, FT score 1e-206" FT misc_feature 247998..248057 FT /note="1 probable transmembrane helix predicted for BPP1535 FT by TMHMM2.0 at aa 12-31" FT misc_feature 249177..249200 FT /note="PS00867 Carbamoyl-phosphate synthase subdomain FT signature 2." FT CDS 250379..250990 FT /transl_table=11 FT /locus_tag="BPP1536" FT /product="putative outer membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1428" FT /db_xref="GOA:Q7WA51" FT /db_xref="InterPro:IPR005632" FT /db_xref="UniProtKB/TrEMBL:Q7WA51" FT /protein_id="CAE36838.1" FT /translation="MAQYRLCFTSLEGEIFMMSDFALNTSGSKRAKRGAGKLGVSLALA FT GALLFGSSAAVTAQAQGTKIGFVNTERILRESGPAKAAQSKIESEFKRRDDELQRLSSS FT LRSQAEKFDKDAPVLSESDRVKRQRELSNLDMDLQRKRREFQEDFNRRRNEEFSSIVTK FT ANDAIKRIAEQENYDLIIQDAVTVNPRIDITDKVIQSLGR" FT misc_feature 250379..250558 FT /note="Signal peptide predicted for BPP1536 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.788) with cleavage site FT probability 0.380 between residues 60 and 61" FT misc_feature 250490..250558 FT /note="1 probable transmembrane helix predicted for BPP1536 FT by TMHMM2.0 at aa 38-60" FT CDS 250999..252090 FT /transl_table=11 FT /gene="lpxD" FT /gene_synonym="firA" FT /locus_tag="BPP1537" FT /product="UDP-3-O-[3-hydroxymyristoyl] glucosamine FT N-acyltransferase" FT /EC_number="2.3.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP1429" FT /db_xref="GOA:Q7WA50" FT /db_xref="InterPro:IPR007691" FT /db_xref="UniProtKB/Swiss-Prot:Q7WA50" FT /protein_id="CAE36839.1" FT /translation="MPVLLDPENALALDVLLAGTDAQGLDWHLSAPDAADLPRIRGIGT FT LSSAGNEEISFLSNPRYQNQLATTRAAAVIVTPDVAQARQEQGASGHVLVVCKHPYLLY FT ARLAQWFERASRPAGPAGVHPSAVVDPSAEIDADARVGAQCVIEAGARIGRGARLGPGC FT VIGAGSTVGADSLLHPRVTLYAGVHVGERAIIHSGAVLGADGFGFAPDPTLGRGAWGKI FT PQLGGVRVGNDVEIGANTTIDRGALDDTIVGDGVKLDNQIMVAHNVRIGAHTAIAACVG FT IAGSTTIGERCTIGGASMLSGHLAIADDVNISGGTAVTSNIAKAGRYTGVYPYAEHSEW FT QRNAAVIQQLALLRRRLRALERE" FT misc_feature 251392..251445 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 39" FT misc_feature 251446..251499 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 0.016" FT misc_feature 251455..251541 FT /note="PS00101 Hexapeptide-repeat containing-transferases FT signature." FT misc_feature 251500..251553 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 33" FT misc_feature 251554..251607 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 0.47" FT misc_feature 251677..251730 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 0.3" FT misc_feature 251743..251796 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 41" FT misc_feature 251752..251838 FT /note="PS00101 Hexapeptide-repeat containing-transferases FT signature." FT misc_feature 251797..251850 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 14" FT misc_feature 251851..251904 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 65" FT CDS 252114..252617 FT /transl_table=11 FT /gene="fabZ" FT /gene_synonym="sefA" FT /locus_tag="BPP1538" FT /product="(3R)-hydroxymyristol-[acyl carrier protein] FT dehydratase" FT /EC_number="4.2.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP1430" FT /db_xref="GOA:Q7WA49" FT /db_xref="InterPro:IPR010084" FT /db_xref="UniProtKB/Swiss-Prot:Q7WA49" FT /protein_id="CAE36840.1" FT /translation="MAAHCNIIYFCFAGKQMELDIKGIMDRLPHRYPMLLIDRVLEMVP FT GKSIVAIKNVSINEPFFTGHFPHHPVMPGVLIVEAMAQASALFSFTDENGGLKCDGAKT FT AYYLVGIDGARFRKPVVPGDQLRLEVEAERLSCTICKYQGRALVDGQLVAEAKLMCAIR FT SLEE" FT misc_feature 252168..252578 FT /note="HMMPfam hit to PF01377, Thioester dehydrase, score FT 1.5e-65" FT CDS 252618..253412 FT /transl_table=11 FT /gene="lpxA" FT /locus_tag="BPP1539" FT /product="acyl-[acyl-carrier-protein]--UDP-N-acetylglucos FT amine O-acyltransferase" FT /EC_number="2.3.1.129" FT /note="ortholog of Bordetella pertussis (BX470248) BP1431" FT /db_xref="GOA:Q7WA48" FT /db_xref="HSSP:1J2Z" FT /db_xref="InterPro:IPR010137" FT /db_xref="UniProtKB/TrEMBL:Q7WA48" FT /protein_id="CAE36841.1" FT /translation="MSGNIHPTAVVDPAAQIDSSVVIGPYSVVGPGVSIAAGTEVGAHC FT VLDGVTSIGRDNRFYRFCSIGGMPQDKKYSGEPTRLVIGDRNTVREFTTFNTGTVQDGG FT VTSIGDDNWIMAYVHIAHDCHIGNNTILANSVQLGGHVQVGDWAIVGGLTGVHQFAKIG FT AHSMTGSNSSLMQDAPPFVLAAGNPCRPVGVNVEGLKRRGFSAAAISALRDAYKSIYRR FT GLSLDEARAELRARQQAEPDVAEHLQTMLDFLDASTRGIIRP" FT misc_feature 252657..252710 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 62" FT misc_feature 252711..252764 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 17" FT misc_feature 252765..252818 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 2.5e+02" FT misc_feature 252930..252983 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 36" FT misc_feature 252984..253037 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 2.1" FT misc_feature 253038..253091 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 2.5e+02" FT misc_feature 253092..253145 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 2.5e+02" FT CDS 253409..254590 FT /transl_table=11 FT /gene="lpxB" FT /gene_synonym="pgsB" FT /locus_tag="BPP1540" FT /product="lipid-A-disaccharide synthase" FT /EC_number="2.4.1.182" FT /note="ortholog of Bordetella pertussis (BX470248) BP1432" FT /db_xref="GOA:Q7WA47" FT /db_xref="InterPro:IPR003835" FT /db_xref="UniProtKB/Swiss-Prot:Q7WA47" FT /protein_id="CAE36842.1" FT /translation="MSLRIGMVAGEPSGDLLAGRIIAGLQARAPGVHCAGIGGPQMAAR FT GFEAWHPMHALTVFGYIDAFKRIPSLLSTYGDVKRRLLAEPPSVFVGIDAPDFNLRLEH FT QLRQAGTPTVHFVGPSIWAWRYERINKIRAAVSHMLVLFPFEEALYRKEGIPVTYVGHP FT LAGVIPMQPDRAAARARLGIDADARVLAILPGSRSSEIRLLAPRFLQAAAELVRRDPRL FT QCVVPMVNPQRRAEFEAIAAQHPVPGLRCVTAAEGQGETPVAWSVMEASNAVLVASGTA FT TLETALYKRPMVISYVLSPWMRRIMAWKSGQQRPYLPWVGLPNVLLRDFAVPELLQDEA FT TPAALAEATWQALTDEAGAARIEARFTALHQDLLRDTPALAAQAILEVADGAA" FT misc_feature 253421..254563 FT /note="HMMPfam hit to PF02684, Lipid-A-disaccharide FT synthetase, score 4.5e-97" FT CDS 254577..255182 FT /transl_table=11 FT /gene="rnhB" FT /locus_tag="BPP1541" FT /product="ribonuclease HII" FT /EC_number="3.1.26.4" FT /note="ortholog of Bordetella pertussis (BX470248) BP1433" FT /db_xref="GOA:Q7WA46" FT /db_xref="InterPro:IPR001352" FT /db_xref="UniProtKB/Swiss-Prot:Q7WA46" FT /protein_id="CAE36843.1" FT /translation="MEQPDLFGTLAPLPAIIAGVDEAGRGPLAGAVYAAAVILDPDRPV FT DGLADSKVLKAEQREALAVQIRAQALAWFVASASVQEIDSLNILRATMLAMQRAVAGLA FT MAPELAMVDGNQAPKLRCAVQTVIKGDALVPAISAASILAKTARDADLLRLHALYPQYG FT FDQHKGYGTPQHLSLLREHGPCPEHRRSFAPIKAYGAP" FT misc_feature 254628..255161 FT /note="HMMPfam hit to PF01351, Ribonuclease HII, score FT 1.3e-65" FT CDS 255128..255952 FT /transl_table=11 FT /locus_tag="BPP1542" FT /product="putative RNA methyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP1434" FT /db_xref="GOA:Q7WA45" FT /db_xref="HSSP:1GZ0" FT /db_xref="InterPro:IPR001537" FT /db_xref="UniProtKB/TrEMBL:Q7WA45" FT /protein_id="CAE36844.1" FT /translation="MPRTPAQLRADQGVRRAMKHLSSRDNPAVKALHKLAAGGGRRDGR FT ILLDGVHLCQAWLAHQGTPLQALFDVARLDHPEIRALAGQVPPQHCLALDSRLLQGLAS FT VESGQGVVFVARAPEPALPERIDENCVLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGT FT AAAWSPKVLRSGQGAHFALHIHEHLDLEAVLPRLDVPLVATTLARSGSLYDTDLPARCA FT WVFGHEGQGVAEALLRAAALRVHIPHESAAVESLNVGAAAAICLFEQRRQRR" FT misc_feature 255509..255928 FT /note="HMMPfam hit to PF00588, SpoU rRNA Methylase family, FT score 2.6e-19" FT CDS complement(255964..256791) FT /transl_table=11 FT /locus_tag="BPP1543" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP1435" FT /db_xref="GOA:Q7WA44" FT /db_xref="InterPro:IPR005177" FT /db_xref="UniProtKB/Swiss-Prot:Q7WA44" FT /protein_id="CAE36845.1" FT /translation="MTSTPIERAVYIVSDSTGITAETFSHSVLSQFDEVNFKPVRLPFI FT DTLDKAREVVARINRNALEAGVPPIVFSTLVNPEILALVRQSNGVFLDLFGTFVSHIEQ FT ALGLKSSHSIGRSHMAANSEKYRNRIDAINFSLAHDDGQFVNQLDQADVILVGVSRCGK FT TPTSLYLAMQYAVKAANFPLTPDDFERGALPKTIAPYRGKLFGLSIQPERLAEVRNERR FT PNSHYARLEQCRYEVAEAERMMRREGISWLSTTTKSIEEIATTVLQEVGLERV" FT misc_feature complement(255976..256779) FT /note="HMMPfam hit to PF03618, Domain of unknown function FT (DUF299), score 6.7e-120" FT misc_feature complement(256300..256323) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 256953..259316 FT /transl_table=11 FT /gene="ppsA" FT /gene_synonym="pps" FT /locus_tag="BPP1544" FT /product="phosphoenolpyruvate synthase" FT /EC_number="2.7.9.2" FT /note="ortholog of Bordetella pertussis (BX470248) BP1436" FT /db_xref="GOA:Q7WA43" FT /db_xref="InterPro:IPR018274" FT /db_xref="UniProtKB/TrEMBL:Q7WA43" FT /protein_id="CAE36846.1" FT /translation="MSYVVSFEQLRMTDVDSVGGKNASLGEMISQLAGAGVRVPGGFAT FT TAQAFRDFLQASGLDKRIADRLATLNPEDVRELASAGAQIRQWVIDAPFSPEFEQAIRT FT AFAELDADGKGSFAVRSSATAEDLPDASFAGQQETFLNVVGVDDVLDKIRHVFASLYND FT RAISYRVHKGYAHAEVALSAGIQRMVRSDKGSAGVMFTIDTESGFQDVVFITSSYGLGE FT TVVQGAVNPDEFYVFKPSLERGNYPIVSRRIGSKLIKMEFDPERPEGRAVRTVDVPVSE FT RNRYSLTDDEVIELARYAVIIEKHYQRPMDIEWGRDGVDGKIYILQARPETVKSQQGVN FT DVQQRYRLKATGQVLVTGRAIGQKIGAGKVRVVADISEMDKVQAGDVLVTDMTDPNWEP FT VMKRASAIITNRGGRTCHAAIIARELGIPAVVGCGDATDLLKDGQAVTASCAEGDEGRI FT YDGLIETEVEEVRRGEMPPIDVKIMMNVGNPQLAFDFAQIPNAGVGLARLEFIINNNIG FT IHPKAVLDYPNVDGELKKAVESAARGHASPRAFFVEKLAEGVATIGAAFWPKPVIVRMS FT DFKSNEYRKLVGGSRYEPEEENPMLGFRGASRYIAADFEECFRMECEALKKVRDEMGLT FT NVEIMVPFVRTLGQARKVVELLAAHGLARGENGLKLIMMCEVPSNAILAEQFLEYFDGF FT SIGSNDMTQLTLGLDRDSGMELLAADFDERDDAVKFMLRRAIKACLAANKYVGICGQGP FT SDHPDFAQWLKDEGILSMSLNPDTVVETWQQLAK" FT misc_feature 256956..258038 FT /note="HMMPfam hit to PF01326, Pyruvate phosphate dikinase, FT PEP/pyruvate binding domain, score 2.1e-129" FT misc_feature 258039..258320 FT /note="HMMPfam hit to PF00391, PEP-utilizing enzyme, mobile FT domain, score 3.4e-40" FT misc_feature 258186..258221 FT /note="PS00370 P |