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EBI DbfetchID BX640423; SV 1; linear; genomic DNA; STD; PRO; 348251 BP. XX AC BX640423; XX DT 09-AUG-2003 (Rel. 76, Created) DT 23-OCT-2008 (Rel. 97, Last updated, Version 7) XX DE Bordetella parapertussis strain 12822, complete genome; segment 1/14 XX KW complete genome. XX OS Bordetella parapertussis OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Bordetella. XX RN [2] RP 1-348251 RA Sebaihia M.; RT ; RL Submitted (06-AUG-2003) to the EMBL/GenBank/DDBJ databases. RL Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute, RL Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail: RL ms5@sanger.ac.uk XX RN [3] RA Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E., RA Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., RA Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A., RA Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I., RA Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., RA Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., RA Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., RA Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., RA Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., RA Barrell B.G., Maskell D.J.; RT "Comparative analysis of the genome sequences of Bordetella pertussis, RT Bordetella parapertussis and Bordetella bronchiseptica"; RL Nat. Genet. 35(1):0-0(2003). XX DR EMBL-CON; BX470249. DR CABRI; NCIMB 9871. DR RFAM; RF01057; SAH_riboswitch. XX FH Key Location/Qualifiers FH FT source 1..348251 FT /organism="Bordetella parapertussis" FT /strain="12822" FT /mol_type="genomic DNA" FT /db_xref="taxon:519" FT CDS 1..1920 FT /transl_table=11 FT /gene="gidA" FT /locus_tag="BPP0001" FT /product="glucose inhibited division protein A" FT /note="ortholog of Bordetella pertussis (BX470248) BP0001" FT /note="Similar to Escherichia coli glucose inhibited FT division protein A GidA or B3741 SWALL:GIDA_ECOLI FT (SWALL:P17112) (629 aa) fasta scores: E(): 6.8e-164, 68.52% FT id in 629 aa" FT /db_xref="GOA:Q7W2I1" FT /db_xref="InterPro:IPR002218" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2I1" FT /protein_id="CAE39742.1" FT /translation="MDFPREFDVIVVGGGHAGTEAALAAARAGAQTLLLTHNIETLGQM FT SCNPSIGGIGKGHLVKEVDALGGAMAIATDEAGIQFRILNSSKGPAVRATRVQADRVLY FT RNAMRARLENQPNLWLFQQAVDDLMVQGDQVVGAVTQIGLRFRARTVVLTAGTFLNGLI FT HVGLQNYSGGRAGDPPANSLGQRLKELQLPQGRLKTGTPPRIDGRSINYSVLEEQPGDL FT DPVPVFSFLGKASMHPRQLPCWITHTNARTHEIIRGGLDRSPMYSGVIEGVGPRYCPSI FT EDKIHRFADKASHQVFLEPEGLNTHEIYPNGVSTSLPFDVQYELIHSLPGLENAHILRP FT GYAIEYDYFDPRALKSTLETKAISGLFFAGQINGTTGYEEAAAQGLLAGANAALQAQGK FT EPWVPRRDEAYLGVLVDDLVTRGVTEPYRMFTSRAEYRLSLREDNADLRLTEIGRRLGL FT VDDVRWDAFSRKRDAVAQEVERLKSTWVNPRVLPAHAAEALLGKAIEREYSLSDLLKRP FT NVSYEALMQARTDEGELLAGPGVLEDDVLAEQVETQVKYAGYIARQQDEVQKHLSHEQQ FT PIPADIDYDAVTSLSFEVRQKLKTHRPETIGQAARVSGVTPAAISLLLIHLKRLHYGSR FT KQAA" FT misc_feature 19..1893 FT /note="HMMPfam hit to PF01134, Glucose inhibited division FT protein A, score 0" FT misc_feature 820..864 FT /note="PS01280 Glucose inhibited division protein A family FT signature 1." FT CDS 1917..2609 FT /transl_table=11 FT /gene="gidB" FT /locus_tag="BPP0002" FT /product="glucose inhibited division protein B" FT /note="ortholog of Bordetella pertussis (BX470248) BP0002" FT /note="Similar to Pseudomonas putida glucose inhibited FT division protein B GidB SWALL:GIDB_PSEPU (SWALL:P25757) FT (216 aa) fasta scores: E(): 1.5e-24, 42.59% id in 216 aa, FT and to Escherichia coli glucose inhibited division protein FT B GidB or B3740 or Z5240 or Ecs4682 SWALL:GIDB_ECOLI FT (SWALL:P17113) (207 aa) fasta scores: E(): 1.6e-12, 39% id FT in 200 aa" FT /db_xref="GOA:Q7W2I0" FT /db_xref="InterPro:IPR003682" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2I0" FT /protein_id="CAE39743.1" FT /translation="MSAVPDIPGGPAQRLAQACDALRLPADAGQQQKLLRYIEQMQRWN FT RTYNLTAIRDPGQMLVQHLFDSLSVVAPLERGLPAAGSGARVKLFDVGSGGGLPGVVLA FT IMRAHWDVTCVDAVEKKTAFVRQMAGALGLPNLQAAHTRIEQLEPAQCDVVISRAFASL FT QDFAKLAGRHVREGGTLVAMKGKVPDDEIQALQQHGHWTVERIEPLVVPALDAQRCLIW FT MRRSQGNI" FT misc_feature 1917..2135 FT /note="PS00430 TonB-dependent receptor proteins signature FT 1." FT misc_feature 2004..2579 FT /note="HMMPfam hit to PF02527, Glucose inhibited division FT protein, score 1.7e-50" FT CDS 2606..3403 FT /transl_table=11 FT /gene="parA" FT /gene_synonym="soj" FT /locus_tag="BPP0003" FT /product="ParA family protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0003" FT /note="Similar to Caulobacter crescentus chromosome FT partitioning protein ParA or Cc3753 SWALL:PARA_CAUCR FT (SWALL:O05189) (267 aa) fasta scores: E(): 9.6e-46, 49.41% FT id in 255 aa, and to Bacillus subtilis sporulation FT initiation inhibitor protein Soj SWALL:SOJ_BACSU FT (SWALL:P37522) (253 aa) fasta scores: E(): 1.3e-43, 48.98% FT id in 247 aa" FT /db_xref="GOA:Q7W2H9" FT /db_xref="HSSP:1IHU" FT /db_xref="InterPro:IPR002586" FT /db_xref="UniProtKB/TrEMBL:Q7W2H9" FT /protein_id="CAE39744.1" FT /translation="MKNIPPSKSARVFCIANQKGGVGKTTTAINLAAGLATHKQRVLLV FT DLDPQGNATMGSGIDKSTLESNLYQVLIGEAGIEQTRVRSESGGYDVLPANRELSGAEI FT DLVQMDERERQLKAAIDKIAGEYDFVLIDCPPTLSLLTLNGLAAAHGVIIPMQCEYFAL FT EGLSDLVNTIKRVHRNINNELRVIGLLRVMFDPRMTLQQQVSAQLESHFGDKVFTTVVP FT RNVRLAEAPSYGMPGVVYDRASRGAQAYIAFGAEMIERVKELD" FT misc_feature 2879..3214 FT /note="HMMPfam hit to PF00991, ParA family ATPase, score FT 1.5e-33" FT CDS 3410..4216 FT /transl_table=11 FT /locus_tag="BPP0004" FT /product="Putative acetyltransferase, GnaT family" FT /note="ortholog of Bordetella pertussis (BX470248) BP0004" FT /note="Similar to Caulobacter crescentus acetyltransferase, FT GnaT family Cc2209 SWALL:Q9A685 (EMBL:AE005892) (207 aa) FT fasta scores: E(): 1.5e-11, 34.63% id in 205 aa, and to FT Rhizobium meliloti putative acetyltransferase protein FT R02624 or Smc02449 SWALL:Q92MJ2 (EMBL:AL591791) (308 aa) FT fasta scores: E(): 5.5e-10, 31.42% id in 245 aa" FT /db_xref="GOA:Q7W2H8" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:Q7W2H8" FT /protein_id="CAE39745.1" FT /translation="MPAVLAVLAAHPAPAAGGELARLEEAALNATTVREQMLYEGWLVR FT WAPSRAKRARCVNVLGLSTRPLDERLAYCTRWYAGHGVPLIVRLTSIGPDFSLDAQLHE FT RGFVAFDRTCVMAAPVVPFTAQAPSGLVFERTTPGRFAQEAGRLRGHDDAATAEHAARL FT QAAPLENLPLLVRDASGECIAAGLAAFDAELVGLFDIVTAPQRRRQGCGAAVLKYLLEQ FT ASHAGARQAYLQVEPQNTAARALYARFGFVDRYTYWYRSMSEATPV" FT misc_feature 3929..4165 FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family, score 2.5e-14" FT CDS 4260..5177 FT /transl_table=11 FT /gene="parB" FT /locus_tag="BPP0005" FT /product="probable chromosome partitioning protein ParB" FT /note="ortholog of Bordetella pertussis (BX470248) BP0005" FT /note="Similar to Pseudomonas putida probable chromosome FT partitioning protein ParB SWALL:PARB_PSEPU (SWALL:P31857) FT (290 aa) fasta scores: E(): 1.3e-40, 48.81% id in 295 aa" FT /db_xref="GOA:Q7W2H7" FT /db_xref="InterPro:IPR004437" FT /db_xref="UniProtKB/TrEMBL:Q7W2H7" FT /protein_id="CAE39746.1" FT /translation="MATKKPKGLGRGLDALLGADVPAIDNIGKAPAAAPEGPPATLPVS FT KMRAGKYQPRTRMDEGALNELAESIRTQGIMQPILVRALGADAPGQYEIIAGERRFRAA FT QLAGLKEVPVLVREVADENAAVMALIENIQREDLNPLEEAHGVRRLLDEFGLTHEQAAQ FT AIGRSRSATSNLLRLLNLAAPVQTMLLAGDVDMGHARALLAVDAATQIQLANQVIAKRL FT SVREAEKLVARAQKDVDAAPRKKGNGASRDVTRLEEALSDHLGTRVALKVGAREKGQIV FT IDFHGWEHLNSLLERQGLSGVVDA" FT misc_feature 4377..4658 FT /note="HMMPfam hit to PF02195, ParB-like nuclease domain, FT score 5.9e-34" FT CDS 5170..6171 FT /transl_table=11 FT /gene="ansB" FT /locus_tag="BPP0006" FT /product="L-asparaginase II precursor" FT /EC_number="3.5.1.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP0006" FT /note="Similar to Escherichia coli L-asparaginase II FT precursor AnsB or B2957 SWALL:ASG2_ECOLI (SWALL:P00805) FT (348 aa) fasta scores: E(): 2.7e-44, 45.92% id in 331 aa" FT /db_xref="GOA:Q7W2H6" FT /db_xref="HSSP:1HG1" FT /db_xref="InterPro:IPR006034" FT /db_xref="UniProtKB/TrEMBL:Q7W2H6" FT /protein_id="CAE39747.1" FT /translation="MPEARLPRIAVLATGGTIAGAQTDAASGAYRAGSYGVGQLLAAVP FT QLAGLARIGAEQIANVGSQNMSHAVWRQLALRAAALCDDPATDGIVITHGTDTLEETAY FT FLSLVLPVDKPVVLLGAMRPATALSADGPVNLYNAVALACHPAARGRGPLVVMNEDIHL FT ARHVQKTAASGIAAFASPNAGRAGVMQGGRPVFHARAERQAADALLRPDELPQQAWPRV FT DIVHACVDLDGELIDFMAGRAQGIVLAGVGDGNATDAALQALQRACARGVAVVRASRTG FT SGRVGRNIEIDDDACGFIAAGDLSPQKARVLLTLGLCQTRDTARLQALVDSR" FT misc_feature 5170..5232 FT /note="Signal peptide predicted for BPP0006 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.722) with cleavage site FT probability 0.254 between residues 21 and 22" FT misc_feature 5200..5226 FT /note="PS00144 Asparaginase / glutaminase active site FT signature 1." FT misc_feature 5218..6153 FT /note="HMMPfam hit to PF00710, Asparaginase, score FT 1.2e-100" FT misc_feature 5434..5466 FT /note="PS00917 Asparaginase / glutaminase active site FT signature 2." FT tRNA 6281..6367 FT /note="tRNA Tyr anticodon GTA, Cove score 72.20" FT tRNA 6556..6629 FT /note="tRNA Gly anticodon TCC, Cove score 82.17" FT tRNA 6636..6710 FT /note="tRNA Thr anticodon GGT, Cove score 86.85" FT CDS 6767..7957 FT /transl_table=11 FT /gene="tufA" FT /gene_synonym="tuf" FT /locus_tag="BPP0007" FT /product="elongation factor Tu" FT /note="ortholog of Bordetella pertussis (BX470248) BP0007" FT /note="Similar to Burkholderia cepacia elongation factor Tu FT Tuf SWALL:EFTU_BURCE (SWALL:P33167) (396 aa) fasta scores: FT E(): 8.8e-139, 92.65% id in 395 aa, and to Escherichia coli FT elongation factor Tu TufA or Z4697 or Ecs4190 SWALL:Q8X4S9 FT (EMBL:J01690) (394 aa) fasta scores: E(): 9.7e-123, 81.51% FT id in 395 aa" FT /db_xref="GOA:Q79GC6" FT /db_xref="HSSP:1AIP" FT /db_xref="InterPro:IPR004160" FT /db_xref="UniProtKB/Swiss-Prot:Q79GC6" FT /protein_id="CAE39748.1" FT /translation="MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLSNKFGGEAR FT GYDQIDAAPEEKARGITINTSHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAIL FT VVSAADGPMPQTREHILLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSKYDF FT PGDDTPIVKGSAKLALEGDKGELGEQAILSLAQALDTYIPTPERAVDGAFLMPVEDVFS FT ISGRGTVVTGRIERGVVKVGEEIEIVGIKPTVKTTCTGVEMFRKLLDQGQAGDNVGILL FT RGTKREDVERGQVLAKPGSINPHTDFTAEVYILSKEEGGRHTPFFNGYRPQFYFRTTDV FT TGTIDLPADKEMVLPGDNVSMTVKLLAPIAMEEGLRFAIREGGRTVGAGVVAKIIK" FT misc_feature 6794..7384 FT /note="HMMPfam hit to PF00009, Elongation factor Tu GTP FT binding domain, score 8.5e-98" FT misc_feature 6821..6844 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 6917..6964 FT /note="PS00301 GTP-binding elongation factors signature." FT misc_feature 7418..7654 FT /note="HMMPfam hit to PF03144, Elongation factor Tu domain FT 2, score 5e-29" FT misc_feature 7664..7951 FT /note="HMMPfam hit to PF03143, Elongation factor Tu FT C-terminal domain, score 4.5e-60" FT tRNA 8068..8143 FT /note="tRNA Trp anticodon CCA, Cove score 85.26" FT CDS 8196..8576 FT /transl_table=11 FT /gene="secE" FT /gene_synonym="prlG" FT /locus_tag="BPP0008" FT /product="preprotein translocase SecE subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP0008" FT /note="Similar to Escherichia coli preprotein translocase FT sece subunit SecE or PrlG or B3981 or Z5554 or Ecs4904 FT SWALL:SECE_ECOLI (SWALL:P16920) (127 aa) fasta scores: E(): FT 6.9e-06, 32% id in 125 aa, and to Vibrio alginolyticus FT preprotein translocase SecE subunit secE SWALL:SECE_VIBAL FT (SWALL:Q9ZNE7) (126 aa) fasta scores: E(): 4.1e-08, 39.84% FT id in 128 aa" FT /db_xref="GOA:Q7W2H5" FT /db_xref="InterPro:IPR005807" FT /db_xref="UniProtKB/TrEMBL:Q7W2H5" FT /protein_id="CAE39749.1" FT /translation="MSNTSIETVTSTADRIKLGLAVLVVIAGIVGFSMLDAQPMVARIG FT VFVGGLVVAALLAWFSEPGRRTLSFAGESYNEVKRVSWPTRKETIQMTGIVFAFVAVMG FT LLMWVLDKGIEWVLYGLLLGWK" FT misc_feature join(8241..8300,8310..8378,8472..8525) FT /note="3 probable transmembrane helices predicted for FT BPP0008 by TMHMM2.0 at aa 16-35, 39-61 and 93-110" FT misc_feature 8391..8561 FT /note="HMMPfam hit to PF00584, SecE/Sec61-gamma subunits of FT protein translocation complex, score 5.5e-16" FT CDS 8586..9119 FT /transl_table=11 FT /gene="nusG" FT /locus_tag="BPP0009" FT /product="transcription antitermination protein NusG" FT /note="ortholog of Bordetella pertussis (BX470248) BP0009" FT /note="Similar to Escherichia coli transcription FT antitermination protein NusG or B3982 or Z5555 or Ecs4905 FT SWALL:NUSG_ECOLI (SWALL:P16921) (181 aa) fasta scores: E(): FT 1.7e-40, 59.77% id in 174 aa, and to Neisseria meningitidis FT transcription antitermination protein NusG or Nma0147 or FT Nmb0126 SWALL:NUSG_NEIMA (SWALL:Q9JRD9) (178 aa) fasta FT scores: E(): 1.8e-45, 66.47% id in 176 aa" FT /db_xref="GOA:Q7W2H4" FT /db_xref="InterPro:IPR005824" FT /db_xref="UniProtKB/TrEMBL:Q7W2H4" FT /protein_id="CAE39750.1" FT /translation="MSKRWYVVHVYSGMEKSVQKALNERIERAELQTSFGRILVPSEEV FT VEVKGGQKSITERRIFPGYVLVEMDLTDETWHLVKNTNRVTGFLGGLGNRPTPISEREV FT EKILNQMEEGVEKPRPKILFEVGEMVRVKEGPLADFNGNVEEVNYEKSKVRVSVTIFGR FT ATPVELDFSQVEKT" FT misc_feature 8589..8720 FT /note="HMMPfam hit to PF02357, Transcription termination FT factor nusG, score 1.3e-13" FT misc_feature 8955..9068 FT /note="HMMPfam hit to PF00467, KOW motif, score 1.2e-07" FT misc_feature 9063..9092 FT /note="PS01014 Transcription termination factor nusG FT signature." FT CDS 9183..9614 FT /transl_table=11 FT /gene="rplK" FT /gene_synonym="relC" FT /locus_tag="BPP0010" FT /product="50S ribosomal protein L11" FT /note="ortholog of Bordetella pertussis (BX470248) BP0010" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L11 RplK or RelC or B3983 SWALL:RL11_ECOLI (SWALL:P02409) FT (141 aa) fasta scores: E(): 3.2e-34, 66.42% id in 140 aa, FT and to Neisseria meningitidis 50S ribosomal protein L11 FT RplK or Nma0146 SWALL:Q9JX02 (EMBL:AL162752) (144 aa) fasta FT scores: E(): 3.7e-45, 86.01% id in 143 aa" FT /db_xref="GOA:Q7W2H3" FT /db_xref="InterPro:IPR006519" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2H3" FT /protein_id="CAE39751.1" FT /translation="MAKKIVGFIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAK FT TQGMEPGLPIPVVITAFADKSFTFIMKTPPATVLIKKASGVQKGSAKPHTDKVGTLTRA FT QAEEIAKTKQPDLTAADLDAAVRTIAGSARSMGITVEGV" FT misc_feature 9207..9605 FT /note="HMMPfam hit to PF00298, Ribosomal protein L11, score FT 5.2e-78" FT misc_feature 9561..9608 FT /note="PS00359 Ribosomal protein L11 signature." FT CDS 9617..10315 FT /transl_table=11 FT /gene="rplA" FT /locus_tag="BPP0011" FT /product="50S ribosomal protein L1" FT /note="ortholog of Bordetella pertussis (BX470248) BP0011" FT /note="Similar to Escherichia coli 50S ribosomal protein L1 FT RplA or B3984 SWALL:RL1_ECOLI (SWALL:P02384) (233 aa) fasta FT scores: E(): 3.1e-50, 65.8% id in 231 aa, and to Neisseria FT meningitidis 50S ribosomal protein L1 RplA or Nma0145 or FT Nmb0128 SWALL:Q9JRJ1 (EMBL:AL162752) (231 aa) fasta scores: FT E(): 3.7e-52, 68.26% id in 230 aa" FT /db_xref="GOA:Q7W2H2" FT /db_xref="HSSP:1AD2" FT /db_xref="InterPro:IPR005878" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2H2" FT /protein_id="CAE39752.1" FT /translation="MAKLSKRAAAIAQKIDRTKLYPVGEALNLVKETATAKFDESIDVA FT VQLGIDPKKSDQLVRGSVVLPAGTGKTVRVAVFAQGEKADAARAAGADIVGLDDLAEQI FT KAGQMDFDVVIASPDTMRVVGALGQVLGPRGLMPNPKVGTVTPDVATAVKNAKAGQIQY FT RTDKAGIIHATIGRASFGVEQLQNNLAALVDALQKARPAAAKGIYLRKLAVSSTMGGGA FT RVEIASLSAN" FT misc_feature 9659..10279 FT /note="HMMPfam hit to PF00687, Ribosomal protein L1p/L10e FT family, score 1.3e-117" FT misc_feature 9977..10033 FT /note="PS01199 Ribosomal protein L1 signature." FT CDS 10558..11082 FT /transl_table=11 FT /gene="rplJ" FT /locus_tag="BPP0012" FT /product="50S ribosomal protein L10" FT /note="ortholog of Bordetella pertussis (BX470248) BP0013" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 50s ribosomal protein L10 RplJ or B3985 or Z5558 or FT Ecs4908 SWALL:RL10_ECOLI (SWALL:P02408) (164 aa) fasta FT scores: E(): 7.8e-18, 43.42% id in 175 aa, and to Neisseria FT meningitidis 50s ribosomal protein L10 RplJ or Nma0144 or FT Nmb0130 SWALL:RL10_NEIMA (SWALL:Q9JQP7) (166 aa) fasta FT scores: E(): 5.8e-29, 55.81% id in 172 aa" FT /db_xref="GOA:Q7W2H1" FT /db_xref="InterPro:IPR002363" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2H1" FT /protein_id="CAE39753.1" FT /translation="MSLNRQEKAVVIEEVSAQVAKAQSIVIAEYRGLDVASVTVLRKTA FT RESGVYLRVLKNTLVRRAVAGTAFEPLSEQLTGPLIYGISADPVAAAKVLAGFAKSNDK FT LVIKAGSLPNSLLTQDGVKALATMPSREELLSKLLGTMQAPIAQFVRTLNEVPTKFARG FT LAAVRDQKAAA" FT misc_feature 10564..10857 FT /note="HMMPfam hit to PF00466, Ribosomal protein L10, score FT 1.5e-22" FT CDS 11164..11547 FT /transl_table=11 FT /gene="rplL" FT /locus_tag="BPP0013" FT /product="50S ribosomal protein L7/L12" FT /note="ortholog of Bordetella pertussis (BX470248) BP0014" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L7/L12 RplL or B3986 SWALL:RL7_ECOLI (SWALL:P02392) (120 FT aa) fasta scores: E(): 1.2e-18, 61.9% id in 126 aa, and to FT Neisseria perflava 50S ribosomal protein L7/L12 RplL FT SWALL:RL7_NEIPE (SWALL:Q9F5M1) (123 aa) fasta scores: E(): FT 1.2e-21, 66.14% id in 127 aa" FT /db_xref="GOA:Q7W2H0" FT /db_xref="HSSP:1CTF" FT /db_xref="InterPro:IPR013823" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2H0" FT /protein_id="CAE39754.1" FT /translation="MALSKAEILDAIAGMSVLELSELIKEMEEKFGVSAAAAAVAVAAP FT AAGGAGAAAAEEQTEFTVVLLEAGANKVSVIKAVRELTGLGLKEAKDLVDGAPKPVKEA FT LPKADAEAAKKKLEEAGAKVEVK" FT misc_feature 11341..11541 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00542, Ribosomal protein L7/L12 FT C-terminal domain, score 3.1e-37" FT CDS 11683..15819 FT /transl_table=11 FT /gene="rpoB" FT /gene_synonym="groN" FT /gene_synonym="nitB" FT /gene_synonym="rif" FT /gene_synonym="ron" FT /gene_synonym="stl" FT /gene_synonym="stv" FT /gene_synonym="tabD" FT /locus_tag="BPP0014" FT /product="DNA-directed RNA polymerase beta chain" FT /EC_number="2.7.7.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP0015" FT /note="Similar to Escherichia coli DNA-directed RNA FT polymerase beta chain RpoB or GroN or NitB or Rif or Ron or FT Stl or Stv or TabD or B3987 or Z5560 or ECS4910 FT SWALL:RPOB_ECOLI (SWALL:P00575) (1342 aa) fasta scores: FT E(): 0, 64.11% id in 1371 aa, and to Pseudomonas aeruginosa FT DNA-directed RNA polymerase beta chain RpoB or PA4270 FT SWALL:RPOB_PSEAE (SWALL:Q51561) (1357 aa) fasta scores: FT E(): 0, 66.93% id in 1370 aa" FT /db_xref="GOA:Q7W2G9" FT /db_xref="InterPro:IPR014724" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2G9" FT /protein_id="CAE39755.1" FT /translation="MQPRVGVLMPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLT FT FLQADTATSDRVNEGLQAAFSSIFPIVSHNGMARLEFVSYALGEPVFDVKECQQRGLTY FT ASPLRAKVRLVLLDREVSKPTIKEVKEQEVYMGEIPLMTGTGSFVINGTERVIVSQLHR FT SPGVFFEHDRGKTHSSGKLLFSARVIPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILL FT KAIGMTPESILAHFFDFDNFELKSEGGMMEFVAERWKGEMARFDIADRDGKVIVEKDKR FT INAKHLRDLAAGGIQRVSVPEDFLYGRVLAKNIVDPDTGEVVAHANDEITESVLNAMRA FT ANVRDIQTLYTNDLDRGPYISQTLRADETADQMAARVAIYRMMRPGEPPAEEAVEALFQ FT RLFYSEETYDLSRVGRMKVNSRLGRGDDSTGPMTLTNEDILETIKVLVELRNGRGQIDD FT IDHLGNRRVRCVGELAENQFRAGLVRVERAVKERLGQAETENLMPHDLINSKPISAAIK FT EFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIE FT TPEGPNIGLINSMALYARLNEYGFLETPYRKIIDGKVSDQIDYLSAIEESHYVIAQANA FT ALDDEGRFVDDLVACREAGETMLTAPGNVHYMDVAPSQIVSVAASLIPFLEHDDANRAL FT MGANMQRQAVPCLRPEKPLVGTGVERTVAVDSGTTVQALRGGVVDHVDADRVVIRVNDE FT ENVAGEVGVDIYNLIKYTRSNQNTNINQRPIVARGDKVAKGDVLADGASTDLGELALGQ FT NMLIAFMPWNGYNFEDSILISERVVADDRYTSIHIEELTVVARDTKLGPEEITRDISNL FT AETQLNRLDDSGIVYIGAEVSADDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDT FT SLRVSSGMTGTVIDVQVFTREGIVRDKRAQSIIDDELRRYRQDLNDQLRIVENDQFDRI FT EKMLVGKAVNGGPRKLAKGATLTKAYLADLDRWQWFDIRLADEQHAVVLEQAKESLEQK FT RHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVKRRLQPGDKMAGRHGNKGVVSRIT FT PVEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHLGWAAKGVGYRIADMLRDERTAQ FT AKSVRGYLEKVYNTTGSSAHIDSLTDEEVLELANNLKKGVPFATPVFDGATEEEIGKML FT ELAYPDDVAARMRLTASRSQAWLYDGRTGEQFERPVTIGYMHYLKLHHLVDDKMHARST FT GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDITGRTKVYEN FT IVKGDHVIDAGMPESFNVLVKEIRSLALDMDLERN" FT misc_feature 11950..15687 FT /note="HMMPfam hit to PF00562, RNA polymerase beta subunit, FT score 0" FT misc_feature 14950..14988 FT /note="PS01166 RNA polymerases beta chain signature." FT CDS 15819..20063 FT /transl_table=11 FT /gene="rpoC" FT /gene_synonym="tabB" FT /locus_tag="BPP0015" FT /product="DNA-directed RNA polymerase beta' chain" FT /EC_number="2.7.7.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP0016" FT /note="Similar to Escherichia coli DNA-directed RNA FT polymerase beta' chain RpoC or TabB or B3988 or Z5561 or FT ECS4911 SWALL:RPOC_ECOLI (SWALL:P00577) (1407 aa) fasta FT scores: E(): 0, 66.4% id in 1399 aa, and to Neisseria FT meningitidis DNA-directed RNA polymerase beta' chain RpoC FT or NMA0141 SWALL:Q9JX03 (EMBL:AL162752) (1391 aa) fasta FT scores: E(): 0, 77.09% id in 1384 aa" FT /db_xref="GOA:Q7W2G8" FT /db_xref="InterPro:IPR012754" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2G8" FT /protein_id="CAE39756.1" FT /translation="MKALLDLFKQVSQDEQFDAIKIGIASPEKIRSWSFGEVRKPETIN FT YRTFKPERDGLFCAKIFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVAKVRRERMGH FT IELASPVAHIWFLKSLPSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDD FT DFLAKTEEYGDDFRALMGAEAVRELLRTIDIDREVETLRGELKATSSEAKIKKISKRLK FT VLEGFQKSGIKAEWMVMEVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKR FT LLELKAPEIILRNEKRMLQEAVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQ FT NLLGKRVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFIFNRLEMMGLATTIKAAKK FT LVESQEPVVWDILEEVIREHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFN FT ADFDGDQMAVHVPLSLEAQLEARTLMLASNNVLFPANGEPSIVPSQDIVLGLYYTTRER FT INGKGEGIFFADVSEVQRAYDNGEVELQTRITVRLTEYERDEQGEWQPVKHRHETTVGR FT ALLSEILPKGLPFTVLNKALKKKEISRLINQSFRRCGLRDTVIFADKLMQSGFRLATRG FT GISIAMEDMLIPKAKEGILAEASREVKEIDKQYSSGLVTSQERYNNVVDIWGKAGDKVG FT KAMMEQLATEPVVNRHGEEVRQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGS FT IIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVITED FT DCGTSHGYAMKALVEGGEVIEPLRDRILGRVAAIDVVNPDTQETAIAAGTLLDEDLVDL FT IDRLGVDEVKVRTPLTCETRHGLCAHCYGRDLGRGSHVNVGEAVGVIAAQSIGEPGTQL FT TMRTFHIGGAASRSALASAVETKSNGTVGFASTMRYVTNAKGERVAISRSGELAIFDDN FT GRERERHKIPYGATVLVGDGEAVKAGTRLASWDPLTRPIVSEYSGAVRFENIEEGVTVA FT KQVDEVTGLSTLVVITPKTRGGKIVMRPQIKLVNENGEDVKIAGTDHSVNISFPVGALI FT TVRDGQQVAVGEVLARIPQESQKTRDITGGLPRVAELFEARSPKDAGMLAEVTGTVSFG FT KDTKGKQRLVITDLEGVSHEFLILKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQGI FT EKLATYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVNIVDPGDTEFIPGEQVERSEL FT LNENDRVVAEDKRPASYDNVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDL FT RGLKENVIVGRLIPAGTGLAYHIARKDKEALEAAEREAARQLANPFEDAPVTVGGEPEA FT PAADTPSDDSAE" FT misc_feature 16521..18311 FT /note="HMMPfam hit to PF00623, RNA polymerase alpha FT subunit, score 1.4e-274" FT misc_feature 16800..16823 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(20172..20576) FT /transl_table=11 FT /locus_tag="BPP0016" FT /product="putative lipoprotein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0017" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7W2G7" FT /protein_id="CAE39757.1" FT /translation="MPIILRPFLSSLSLAVLALSGCANLSQPAAEAPTTPAALQALAEV FT RTEYGAGHYGEVIRRVARSDELAAAPKAVRIEAFKLQAFSYCVSNYTQLCEDAFVRILH FT LDSSFTLAPNEAGHPAWGPVFRAAQSKAGT" FT misc_feature complement(20484..20576) FT /note="Signal peptide predicted for BPP0016 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.844) with cleavage site FT probability 0.529 between residues 50 and 51" FT CDS 20817..22043 FT /transl_table=11 FT /locus_tag="BPP0017" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0018" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7W2G6" FT /protein_id="CAE39758.1" FT /translation="MPLSAASQHPRSPFAGAAPLAHRPLSAIAATAAGGVPQARIKRLL FT GELVPQLASVHEQGHICGDITVDSVGLDESGRAHLLALNGAAQGEAALPAPGYAPFELY FT VEDPAWPRGPWTDIYALSAVAHSLITGRRPPAAPERSVNDGYQPLAQRDLPKYDNDFLR FT AIDAGLAVRPQARPHTLEAFVDSLKFPEPEPPAEAMAPLPSEPPPRDEVRDEEPVRQRP FT AVRSILFAILLALAALGVAVYWWQRLTGTPSGVITSSERVTTPGATATPSDSREAERPA FT AGAAPPQGGDAGSADTSAPPAQAQAGPDAAPAPDVAPEGAATDAQAESEAAATPAPAAA FT RVTVRINVQPWGEIWINGVRRGVSPPMKELRLAPGRYSVVVRNADLPPYRATLEVKAGQ FT PARITHVFQ" FT misc_feature 21483..21551 FT /note="1 probable transmembrane helix predicted for BPP0017 FT by TMHMM2.0 at aa 223-245" FT CDS complement(join(22059..23636,23635..24351)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0018" FT /product="probable two-component sensor protein FT (Pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0019" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 239. Similar to Pseudomonas FT aeruginosa probable two-component sensor Pa4036 FT SWALL:Q9HWZ1 (EMBL:AE004820) (766 aa) fasta scores: E(): FT 1.8e-41, 35.85% id in 792 aa, and to Caulobacter crescentus FT sensor histidine kinase Cc0238 SWALL:Q9ABI9 (EMBL:AE005697) FT (534 aa) fasta scores: E(): 7.9e-15, 31.29% id in 278 aa" FT /db_xref="PSEUDO:CAE39759.1" FT misc_feature complement(22074..22421) FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, and HSP90-like ATPase, score 6.6e-38" FT misc_feature complement(22551..22748) FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain, score 0.012" FT variation complement(23635..23637) FT /note="46 bp deletion following this codon in parapertussis FT relative to pertussis" FT misc_feature complement(24256..24351) FT /note="Signal peptide predicted for BPP0018 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.671) with cleavage site FT probability 0.192 between residues 32 and 33" FT CDS complement(24353..25459) FT /transl_table=11 FT /locus_tag="BPP0019" FT /product="putative peptidoglycan binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0020" FT /note="Similar to Caulobacter crescentus peptidoglycan FT binding domain protein Cc3326 SWALL:Q9A378 (EMBL:AE005994) FT (457 aa) fasta scores: E(): 2.4e-23, 33.8% id in 355 aa" FT /db_xref="GOA:Q7W2G5" FT /db_xref="InterPro:IPR018392" FT /db_xref="UniProtKB/TrEMBL:Q7W2G5" FT /protein_id="CAE39760.1" FT /translation="MIRPFALAFMLVCALVASAAVQAQPAGSLGENFLYRVRSGDTLIA FT LASTYTGNESNWSVLQTLNRVDDPQRLPIALELRIPLAMIPVQAAGAEVVHVSGSATAD FT GQALRVGMQIVEGSTIRTASGSFVTLKLSDGSQVTIPENGTVAANRLRQFQRVPLTDSI FT FQVQQGELESRVAPGGQGVGRFEIRTPVAVTGVRGTRFRVKSSPQGASSEVLEGSVRLQ FT PHAPDAAPATPVAVSSGYGANVGSDGAFSGVQALLPAPQLQAPARAASGGWTVPFAPVS FT GASAYIVRVSRDAEGMHVVTSGRFDTNDVRFRAPGAGTYYVAVRAVDASGLNGREAVQP FT FEGANVLSTPYGLSVATGTGDLVLLSEF" FT misc_feature complement(25217..25357) FT /note="HMMPfam hit to PF01476, LysM domain, score 0.00042" FT misc_feature complement(25391..25459) FT /note="Signal peptide predicted for BPP0019 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.964 between residues 23 and 24" FT CDS complement(25477..26211) FT /transl_table=11 FT /locus_tag="BPP0020" FT /product="probable two-component response regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0021" FT /note="Similar to Caulobacter crescentus DNA-binding FT response regulator Cc3325 SWALL:Q9A379 (EMBL:AE005994) (236 FT aa) fasta scores: E(): 1.1e-37, 47.82% id in 230 aa, and to FT Pseudomonas aeruginosa probable two-component response FT regulator Pa4032 SWALL:Q9HWZ5 (EMBL:AE004820) (238 aa) FT fasta scores: E(): 4.6e-28, 41.27% id in 235 aa" FT /db_xref="GOA:Q7W2G4" FT /db_xref="HSSP:1B00" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W2G4" FT /protein_id="CAE39761.1" FT /translation="MSQRMKIASLEDDLDQAQHIQQVLSAAGYTCTSYPRSLDLLAALR FT VQAFDLILLDWQLPDMNGDEVVRRLRTSYGFAVPIIFLTSRDQESDLVQGLQAGADDYI FT VKPMRPAELLARVAALLRRSQDALPDYLPFSVAGYRIDPNERSIALDGQVVPLPPKEFE FT LAQLFFRNIGRLLSRDVLAESVWNREIPATSRTLDTHLSNIRQKLQLRPQNGVRLSSSY FT ALGYRLELVSDPQPQADDAKDD" FT misc_feature complement(25537..25755) FT /note="HMMPfam hit to PF00486, Transcriptional regulatory FT protein, C terminal, score 3.8e-10" FT misc_feature complement(25837..26199) FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain, score 3.2e-34" FT CDS 26469..27281 FT /transl_table=11 FT /locus_tag="BPP0021" FT /product="Two-component response regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0022" FT /note="Similar to Zymomonas mobilis aerobic respiration FT control protein ArcA SWALL:Q9X3W0 (EMBL:AF088896) (241 aa) FT fasta scores: E(): 7.9e-10, 31.06% id in 235 aa, and to FT Rhodobacter sphaeroides DmsR SWALL:O32479 (EMBL:D89075) FT (232 aa) fasta scores: E(): 2.7e-10, 28.81% id in 236 aa" FT /db_xref="GOA:Q7W2G3" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W2G3" FT /protein_id="CAE39762.1" FT /translation="MRNTAPHCLKCVQARAFPFERLKAGREPADWQGFVMKQLSTLIMT FT PDDADRDRIIAAMLLAGISAKGCSTPLELFGLLSEDTYDAVVMDLSELGELGYALVARL FT RGSPELGIIVIGGNLTLDARLRCLQSGADACVPLPADERELACVLLALARRLPAWQEDE FT EAVAQRGTDEGWELRDQDWTLVAPGGEELSLSANERQIVRLLLGAAGRAIGRAELASEL FT AVDGPAVRSTGERSIDVIVSRLRRKAELAGLVLPIRTVYGSGYLFANS" FT misc_feature 26583..26939 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain, score 0.0016" FT misc_feature 27036..27260 FT /note="HMMPfam hit to PF00486, Transcriptional regulatory FT protein, C terminal, score 2.4e-05" FT CDS complement(27311..28246) FT /transl_table=11 FT /locus_tag="BPP0022" FT /product="putative metal transporter" FT /note="Similar to Rhizobium meliloti putative FT histidine-rich transporter transmembrane protein R01996 or FT Smc04167 SWALL:Q92P03 (EMBL:AL591789) (321 aa) fasta FT scores: E(): 6.7e-57, 55.41% id in 314 aa, and to FT Bradyrhizobium japonicum putative inner membrane protein FT SWALL:Q9RH59 (EMBL:AF065159) (344 aa) fasta scores: E(): FT 3.3e-44, 46.23% id in 305 aa" FT /db_xref="GOA:Q7W2G2" FT /db_xref="InterPro:IPR002524" FT /db_xref="UniProtKB/TrEMBL:Q7W2G2" FT /protein_id="CAE39763.1" FT /translation="MDSLPPSPPGRHGHSFLGPAHDENAKRTRWVVLLTLAMMVGEIVA FT GYLTGSMALLADGFHMATHAGALGIAAIAYAYAKRNADNRAFSFGTGKVGELAGFASAL FT MLAMVSLAIGVESAIRLVQPTDVAFGEATLIAVVGLGVNLVSALLLGGGHAGHVHAEHH FT HPGHARHPHGHDNNLRSAYVHVLADALTSVLAIVALLAGRYLGWIWLDPVIGMVGAVVI FT ARWAWTLMRDTGAILLDKADRHLEAEVRGAIETAGDATIADLHIWQIGPQAHAAIVSVV FT AARGVTASQIRERVSSIHEVRHLTVELVPA" FT misc_feature complement(27317..28165) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF01545, Cation efflux family, score FT 7.5e-35" FT misc_feature complement(join(27566..27631,27647..27703,27785..27850, FT 27890..27955,28016..28072,28094..28159)) FT /note="6 probable transmembrane helices predicted for FT BPP0022 by TMHMM2.0 at aa 29-51, 58-77, 97-119, 132-154, FT 181-200 and 205-227" FT CDS complement(28252..28527) FT /transl_table=11 FT /locus_tag="BPP0023" FT /product="conserved hypothetical protein" FT /note="Similar to Serratia marcescens hypothetical 10.1 kDa FT protein in bioA 5'region SWALL:YOHL_SERMA (SWALL:P55757) FT (91 aa) fasta scores: E(): 7.7e-13, 43.95% id in 91 aa, and FT to Pseudomonas aeruginosa hypothetical protein Pa1298 FT SWALL:Q9I446 (EMBL:AE004559) (91 aa) fasta scores: E(): FT 1.5e-11, 42.85% id in 91 aa" FT /db_xref="InterPro:IPR003735" FT /db_xref="UniProtKB/TrEMBL:Q7W2G1" FT /protein_id="CAE39764.1" FT /translation="MSHLSDHKDELLKRTQRIAGQVQAIQRSLETEADCESILHLVAAT FT RGALNGLLDEILEAHAREHVAHPDLTPDARSKGLEALVSAIRRYSK" FT misc_feature complement(28258..28446) FT /note="HMMPfam hit to PF02583, Uncharacterized BCR, FT COG1937, score 4e-07" FT CDS 29104..29481 FT /transl_table=11 FT /gene="rpsL" FT /locus_tag="BPP0024" FT /product="30S ribosomal protein S12" FT /note="ortholog of Bordetella pertussis (BX470248) BP3608" FT /note="Similar to Escherichia coli 30S ribosomal protein FT S12 RpsL SWALL:RS12_ECOLI (SWALL:P02367) (123 aa) fasta FT scores: E(): 3.7e-39, 81.81% id in 121 aa, and to FT Thiobacillus cuprinus 30S ribosomal protein S12 RpsL FT SWALL:RS12_THICU (SWALL:O50563) (124 aa) fasta scores: E(): FT 2.7e-41, 88.71% id in 124 aa" FT /db_xref="GOA:Q7W2G0" FT /db_xref="InterPro:IPR005679" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2G0" FT /protein_id="CAE39765.1" FT /translation="MPTISQLVRKPREVSIIKSKSPALENCPQRRGVCTRVYTTTPKKP FT NSALRKVAKVRLTNGYEVISYIGGEGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGSLDL FT QGVKDRKQARSKYGAKRPKKA" FT misc_feature 29104..29472 FT /note="HMMPfam hit to PF00164, Ribosomal protein S12, score FT 3.8e-79" FT misc_feature 29230..29253 FT /note="PS00055 Ribosomal protein S12 signature." FT CDS 29645..30115 FT /transl_table=11 FT /gene="rpsG" FT /locus_tag="BPP0025" FT /product="30S ribosomal protein S7" FT /note="ortholog of Bordetella pertussis (BX470248) BP3609" FT /note="Similar to Escherichia coli 30S ribosomal protein S7 FT RpsG or B3341 SWALL:RS7_ECOLI (SWALL:P02359) (178 aa) fasta FT scores: E(): 3.9e-39, 66.45% id in 155 aa, and to Neisseria FT meningitidis 30S ribosomal protein S7 RpsG or Nma0136 or FT Nmb0137 SWALL:RS7_NEIMA (SWALL:Q9JR15) (156 aa) fasta FT scores: E(): 7.1e-50, 84.61% id in 156 aa" FT /db_xref="GOA:Q7W2F9" FT /db_xref="HSSP:1HUS" FT /db_xref="InterPro:IPR005717" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2F9" FT /protein_id="CAE39766.1" FT /translation="MPRRREVPKREILPDPKFGSVELAKFMNVVMLDGKKAVAERIIYG FT ALEQVQVKTGKDAIEVFNLAINNIKPIVEVKSRRVGGANYQVPVEVRPVRRLALAMRWL FT REAAKKRGEKSMDLRLAGELIDASEGRGAAMKKREDTHKMAEANKAFSHFRW" FT misc_feature 29645..30109 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00177, Ribosomal protein S7p/S5e, FT score 2.9e-89" FT misc_feature 29702..29782 FT /note="PS00052 Ribosomal protein S7 signature." FT CDS 30133..32235 FT /transl_table=11 FT /gene="fusA" FT /gene_synonym="fus" FT /gene_synonym="far1" FT /locus_tag="BPP0026" FT /product="elongation factor G" FT /note="ortholog of Bordetella pertussis (BX470248) BP3610" FT /note="Similar to Escherichia coli elongation factor G FT (EF-G) FusA or Fus or Far or B3340 or Z4698 or Ecs4191 FT SWALL:EFG_ECOLI (SWALL:P02996) (703 aa) fasta scores: E(): FT 2.3e-185, 74% id in 704 aa, and to Neisseria meningitidis FT elongation factor G FusA or Nma0135 SWALL:Q9JX07 FT (EMBL:AL162752) (701 aa) fasta scores: E(): 8.1e-192, 75% FT id in 700 aa" FT /db_xref="GOA:Q7W2F8" FT /db_xref="InterPro:IPR004161" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2F8" FT /protein_id="CAE39767.1" FT /translation="MARKTPIERYRNIGISAHIDAGKTTTTERILFYTGVNHKLGETHD FT GSATMDWMEQEQERGITITSAATTAFWRGMAGNYPEYRINIIDTPGHVDFTIEVERSMR FT VLDGACMVYCAVGGVQPQSETVWRQANKYGVPRLAFVNKMDRTGANFFKVYDQLKTRLR FT ANPVPIVIPIGAEDSFTGVVDLVKMKAIIWDEASQGTKFEYGDIPAELEGTANEWREKL FT VEAAAESSEELMNKYLETGSLDEDDINVALRQRTIAGEIQPMLCGTAFKNKGVQRMLDA FT VIDYLPSPADIPPVDGQDDDGNPIKRSADDAEKFSALAFKLMSDPFVGQLTFVRVYSGV FT LKSGDTVYNPIKGKKERIGRLLQMHANNREEIKEVLAGDIAAVVGLKDVTTGETLCDID FT SHILLERMEFPEPVISQAVEPKSKADQEKMGLALSRLAQEDPSFRVRSDEESGQTIISG FT MGELHLEILVDRMRREFGVEANVGKPQVAYRETIRKNCDEVEGKFVKQSGGRGQYGHVV FT LKLEPLPPGGGYEFVDAIKGGVVPREYIPAVDKGIQETLPAGILAGYPVVDVKATLFFG FT SYHDVDSNENAFKMAASMAFKEGMRRASPVLLEPMMAVEVETPEDYAGTVMGDLSSRRG FT MVQGMDDIVGGGKTIKAEVPLAEMFGYATNLRSLTQGRATYTMEFKHYAEAPKNVADEV FT IAARGK" FT misc_feature 30154..31002 FT /note="HMMPfam hit to PF00009, Elongation factor Tu GTP FT binding domain, score 1.6e-107" FT misc_feature 30181..30204 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 30283..30330 FT /note="PS00301 GTP-binding elongation factors signature." FT misc_feature 31081..31320 FT /note="HMMPfam hit to PF03144, Elongation factor Tu domain FT 2, score 1e-26" FT misc_feature 31684..32202 FT /note="HMMPfam hit to PF00679, Elongation factor G FT C-terminus, score 1.2e-110" FT CDS 32312..33502 FT /transl_table=11 FT /gene="tuf" FT /gene_synonym="tufA" FT /gene_synonym="tufB" FT /locus_tag="BPP0027" FT /product="elongation factor Tu" FT /note="ortholog of Bordetella pertussis (BX470248) BP3611" FT /note="Similar to Escherichia coli elongation factor Tu FT TufA or Z4697 or Ecs4190 SWALL:Q8X4S9 (EMBL:J01690) (394 FT aa) fasta scores: E(): 9.7e-123, 81.51% id in 395 aa, and FT to Burkholderia cepacia elongation factor Tu TufA FT SWALL:EFTU_BURCE (SWALL:P33167) (396 aa) fasta scores: E(): FT 8.8e-139, 92.65% id in 395 aa" FT /db_xref="GOA:Q79GC6" FT /db_xref="HSSP:1AIP" FT /db_xref="InterPro:IPR004160" FT /db_xref="UniProtKB/Swiss-Prot:Q79GC6" FT /protein_id="CAE39768.1" FT /translation="MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLSNKFGGEAR FT GYDQIDAAPEEKARGITINTSHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAIL FT VVSAADGPMPQTREHILLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSKYDF FT PGDDTPIVKGSAKLALEGDKGELGEQAILSLAQALDTYIPTPERAVDGAFLMPVEDVFS FT ISGRGTVVTGRIERGVVKVGEEIEIVGIKPTVKTTCTGVEMFRKLLDQGQAGDNVGILL FT RGTKREDVERGQVLAKPGSINPHTDFTAEVYILSKEEGGRHTPFFNGYRPQFYFRTTDV FT TGTIDLPADKEMVLPGDNVSMTVKLLAPIAMEEGLRFAIREGGRTVGAGVVAKIIK" FT misc_feature 32339..32929 FT /note="HMMPfam hit to PF00009, Elongation factor Tu GTP FT binding domain, score 8.5e-98" FT misc_feature 32366..32389 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 32462..32509 FT /note="PS00301 GTP-binding elongation factors signature." FT misc_feature 32963..33199 FT /note="HMMPfam hit to PF03144, Elongation factor Tu domain FT 2, score 5e-29" FT misc_feature 33209..33496 FT /note="HMMPfam hit to PF03143, Elongation factor Tu FT C-terminal domain, score 4.5e-60" FT CDS 33566..33877 FT /transl_table=11 FT /gene="rpsJ" FT /gene_synonym="nusE" FT /locus_tag="BPP0028" FT /product="30S ribosomal protein S10" FT /note="ortholog of Bordetella pertussis (BX470248) BP3612" FT /note="Similar to Escherichia coli 30S ribosomal protein FT S10 RpsJ or NusE or B3321 or Z4692 or Ecs4186 FT SWALL:RS10_ECOLI (SWALL:P02364) (103 aa) fasta scores: E(): FT 2e-27, 75.48% id in 102 aa, and to Ralstonia solanacearum FT 30S ribosomal protein S10 RpsJ or Rsc3020 or Rs04737 FT SWALL:RS10_RALSO (SWALL:Q8XV11) (104 aa) fasta scores: E(): FT 3.7e-34, 90.19% id in 102 aa" FT /db_xref="GOA:Q7W2F7" FT /db_xref="InterPro:IPR018268" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2F7" FT /protein_id="CAE39769.1" FT /translation="MKNQKIRIRLKAFDYKLIDQSAAEIVDTAKRTGAVVRGPVPLPTR FT IRRYDVLRSPHVNKTSRDQFEIHTHQRLMDIVDPTDKTVDALMRLDLPAGVDVEIALQ" FT misc_feature 33578..33865 FT /note="HMMPfam hit to PF00338, Ribosomal protein S10p/S20e, FT score 4e-55" FT misc_feature 33650..33697 FT /note="PS00361 Ribosomal protein S10 signature." FT CDS 34217..34918 FT /transl_table=11 FT /gene="rplC" FT /locus_tag="BPP0029" FT /product="50S ribosomal protein L3" FT /note="ortholog of Bordetella pertussis (BX470248) BP3613" FT /note="Similar to Escherichia coli 50S ribosomal protein L3 FT RplC or B3320 or Z4691 or Ecs4185 SWALL:RL3_ECOLI FT (SWALL:P02386) (209 aa) fasta scores: E(): 1.1e-47, 67.77% FT id in 211 aa, and to Neisseria meningitidis 50S ribosomal FT protein L3 RplC or Nma0129 or Nmb0142 SWALL:Q9JRH6 FT (EMBL:AL162752) (214 aa) fasta scores: E(): 3.2e-51, 69.48% FT id in 213 aa" FT /db_xref="GOA:Q7W2F6" FT /db_xref="InterPro:IPR019926" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2F6" FT /protein_id="CAE39770.1" FT /translation="MEKTMSNSTPTPAAHRLGLVGRKVGMTRIFTEDGESIPVTVLDVS FT NNRVTQVKSLESDGYAAIQVTYGTRRATRVVKPQAGHYAKAGAEAGSILKEFRLDPARA FT AEFAAGAVIAVESVFEAGQQVDVTGTSIGKGFAGTIKRHNFGSQRASHGNSRSHRVPGS FT IGQAQDPGRIFPGKRMSGHMGDVTRTVQNLDVVRVDAERGLLMVKGAVPGHAGGDVIVR FT PAVKAPAKKGA" FT misc_feature 34283..34882 FT /note="HMMPfam hit to PF00297, Ribosomal protein L3, score FT 2.1e-87" FT misc_feature 34571..34642 FT /note="PS00474 Ribosomal protein L3 signature." FT CDS 34923..35540 FT /transl_table=11 FT /gene="rplD" FT /locus_tag="BPP0030" FT /product="50S ribosomal protein L4" FT /note="ortholog of Bordetella pertussis (BX470248) BP3614" FT /note="Similar to Escherichia coli, Escherichia coli FT O157:H7, Salmonella typhimurium, and Salmonella typhi 50S FT ribosomal protein L4 RplD or EryA or B3319 or Z4690 or FT Ecs4184 or Stm3439 or Sty4359 SWALL:RL4_ECOLI FT (SWALL:P02388) (201 aa) fasta scores: E(): 9.7e-41, 58.33% FT id in 204 aa, and to Neisseria meningitidis 50s ribosomal FT protein L4 RplD or Nma0128 or Nmb0143 SWALL:Q9JRA2 FT (EMBL:AL162752) (206 aa) fasta scores: E(): 3.9e-51, 65.02% FT id in 203 aa" FT /db_xref="GOA:Q7W2F5" FT /db_xref="InterPro:IPR013005" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2F5" FT /protein_id="CAE39771.1" FT /translation="MDLKLLNDQGQAATFSAPDTIFGRDFNEALVHQIVVAFQANARSG FT NRAQKDRAEVKHSTKKPWRQKGTGRARAGMTSSPLWRGGGRAFPNSPEENFSQKVNKKM FT YRAGIRSILSQLAREDRVAVVDTFTLESPKTKLAAAKLKSLGLDSVLIITDNVDENVYL FT ATRNLPHVAVVEPRYADPLSLIHYKKVLITKPAIAQLEEMLG" FT misc_feature 34959..35531 FT /note="HMMPfam hit to PF00573, Ribosomal protein L4/L1 FT family, score 7.8e-47" FT CDS 35537..35833 FT /transl_table=11 FT /gene="rplW" FT /locus_tag="BPP0031" FT /product="50S ribosomal protein L23" FT /note="ortholog of Bordetella pertussis (BX470248) BP3615" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L23 RplW or B3318 or Z4689 or Ecs4183 SWALL:RL23_ECOLI FT (SWALL:P02424) (100 aa) fasta scores: E(): 2.1e-14, 54.94% FT id in 91 aa, and to Neisseria meningitidis 50S ribosomal FT protein L23 RplW or Nma0127 SWALL:Q9JX11 (EMBL:AL162752) FT (106 aa) fasta scores: E(): 1e-18, 63.83% id in 94 aa" FT /db_xref="GOA:Q7W2F4" FT /db_xref="InterPro:IPR013025" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2F4" FT /protein_id="CAE39772.1" FT /translation="MNAERLMQVILAPIVTEKATFVAEKNQQVAFRVVADATKPEIKAA FT VELLFKVQVESVQVLNRKGKVKRFGRFVGRRRNERKAYVALKDGQEIDFAEVK" FT misc_feature 35555..35827 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00276, Ribosomal protein L23, score FT 1.2e-25" FT CDS 35834..36661 FT /transl_table=11 FT /gene="rplB" FT /locus_tag="BPP0032" FT /product="50S ribosomal protein L2" FT /note="ortholog of Bordetella pertussis (BX470248) BP3616" FT /note="Similar to Escherichia coli 50S ribosomal protein L2 FT RplB or B3317 or Z4688 or Ecs4182 SWALL:RL2_ECOLI FT (SWALL:P02387) (272 aa) fasta scores: E(): 5e-75, 67.03% id FT in 273 aa, and to Neisseria meningitidis 50S ribosomal FT protein L2 Nmb0145 SWALL:Q9K1I5 (EMBL:AE002373) (277 aa) FT fasta scores: E(): 1.1e-92, 81.61% id in 272 aa" FT /db_xref="GOA:Q7W2F3" FT /db_xref="InterPro:IPR014722" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2F3" FT /protein_id="CAE39773.1" FT /translation="MALVKVKPTSAGRRGMVKVVSPKLHKGAPHAALLEKKTRGSGRNN FT NGHITVRHRGGGHKQHYRVVDFRRNKDGIPAKVERLEYDPNRTAHIALLCYADGERRYI FT IAPRGLEVGATLISGIEAPIRAGNTLPIRNIPVGTTIHCIEMIPGKGAQMARSAGASAV FT LMAREGTYAQVRLRSGEVRRVHIQCRATIGEVGNEEHSLRQIGKAGAMRWRGVRPTVRG FT VAMNPIDHPHGGGEGRTGEAREPVSPWGTPAKGFKTRRNKRTNNMIVQRRKRK" FT misc_feature 35957..36613 FT /note="HMMPfam hit to PF00181, Ribosomal Proteins L2, score FT 4.3e-144" FT misc_feature 36485..36520 FT /note="PS00467 Ribosomal protein L2 signature." FT CDS 36674..36949 FT /transl_table=11 FT /gene="rpsS" FT /locus_tag="BPP0033" FT /product="30S ribosomal protein S19" FT /note="ortholog of Bordetella pertussis (BX470248) BP3617" FT /note="Similar to Escherichia coli 30S ribosomal protein FT S19 RpsS or B3316 or Z4687 or Ecs4181 SWALL:RS19_ECOLI FT (SWALL:P02375) (91 aa) fasta scores: E(): 4.4e-27, 71.91% FT id in 89 aa, and to Ralstonia solanacearum 30S ribosomal FT protein S19 RpsS or Rsc3015 or Rs04742 SWALL:RS19_RALSO FT (SWALL:Q8XV16) (91 aa) fasta scores: E(): 2.7e-33, 86.81% FT id in 91 aa" FT /db_xref="GOA:Q7W2F2" FT /db_xref="InterPro:IPR005732" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2F2" FT /protein_id="CAE39774.1" FT /translation="MSRSIKKGPFVDAHLIKKVDAAVAGKDKKPIKTWSRRSTVLPEFI FT GLTIAVHNGRQHVPVYINENMVGHKLGEFALTRTFKGHAADKKSKR" FT misc_feature 36680..36922 FT /note="HMMPfam hit to PF00203, Ribosomal protein S19, score FT 1.1e-50" FT misc_feature 36830..36904 FT /note="PS00323 Ribosomal protein S19 signature." FT CDS 36953..37282 FT /transl_table=11 FT /gene="rplV" FT /locus_tag="BPP0034" FT /product="50S ribosomal protein L22" FT /note="ortholog of Bordetella pertussis (BX470248) BP3618" FT /note="Similar to Escherichia coli, Escherichia coli FT O157:H7, Salmonella typhimurium, and Salmonella typhi 50S FT ribosomal protein L22 RplV or EryB or b3315 or z4686 or FT ecs4180 or stm3435 or sty4363 SWALL:RL22_ECOLI FT (SWALL:P02423) (110 aa) fasta scores: E(): 1.4e-23, 70.09% FT id in 107 aa, and to Neisseria meningitidis 50s ribosomal FT protein L22 RplV or nma0124 or nmb0147 SWALL:Q9JRD8 FT (EMBL:AL162752) (109 aa) fasta scores: E(): 2.3e-28, 75.92% FT id in 108 aa" FT /db_xref="GOA:Q7W2F1" FT /db_xref="InterPro:IPR005727" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2F1" FT /protein_id="CAE39775.1" FT /translation="METTAIIRGVHISAQKTRLVADLIRGKSVAQALNILTFSPKKAAV FT ILKKAVESAIANAEHNDGADIDELKVTTIFVDKAQSMKRFSARAKGRGNRIEKQTCHIT FT VKVGA" FT misc_feature 36965..37276 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00237, Ribosomal protein L22p/L17e, FT score 1.6e-49" FT misc_feature 37013..37036 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 37199..37273 FT /note="PS00464 Ribosomal protein L22 signature." FT CDS 37292..38083 FT /transl_table=11 FT /gene="rpsC" FT /locus_tag="BPP0035" FT /product="30S ribosomal protein S3" FT /note="ortholog of Bordetella pertussis (BX470248) BP3619" FT /note="Similar to Escherichia coli, Escherichia coli FT O157:H7, Salmonella typhimurium, and Salmonella typhi 30S FT ribosomal protein S3 RpsC or b3314 or z4685 or ecs4179 or FT stm3434 or sty4364 SWALL:RS3_ECOLI (SWALL:P02352) (232 aa) FT fasta scores: E(): 3.3e-50, 61.2% id in 232 aa, and to FT Neisseria meningitidis 30s ribosomal protein S3 RpsC or FT nma0123 or nmb0148 SWALL:Q9JQX2 (EMBL:AL162752) (230 aa) FT fasta scores: E(): 6.7e-55, 71.12% id in 232 aa" FT /db_xref="GOA:Q7W2F0" FT /db_xref="InterPro:IPR008282" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2F0" FT /protein_id="CAE39776.1" FT /translation="MGQKIHPTGFRLAVTRNWTSRWFADDKAFGTMLAEDIRVREYLKK FT KLKSASVGRVIIERPAKNARITVYSARPGVVIGKRGEDIENLKADLQRLMGVPVHVNIE FT EIRKPETDAQLIADSISQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIA FT RTEWYREGRVPLHTLKANIDYGTSEAHTTYGVIGIKVWVYKGDMLANGELPPEAATPRE FT EERRPRRAPRGDRPDGARTGRPGGRGRGPRKADAAPAPEGE" FT misc_feature 37292..37477 FT /note="HMMPfam hit to PF00417, Ribosomal protein S3, FT N-terminal domain, score 1.8e-25" FT misc_feature 37484..37627 FT /note="HMMPfam hit to PF00013, KH domain, score 5.5e-07" FT misc_feature 37646..37897 FT /note="HMMPfam hit to PF00189, Ribosomal protein S3, FT C-terminal domain, score 2e-51" FT misc_feature 37778..37882 FT /note="PS00548 Ribosomal protein S3 signature." FT CDS 38086..38502 FT /transl_table=11 FT /gene="rplP" FT /locus_tag="BPP0036" FT /product="50S ribosomal protein L16" FT /note="ortholog of Bordetella pertussis (BX470248) BP3620" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 50S ribosomal protein L16 RplP or b3313 or z4684 or FT ecs4178 SWALL:RL16_ECOLI (SWALL:P02414) (136 aa) fasta FT scores: E(): 4.2e-38, 75.73% id in 136 aa, and to Ralstonia FT solanacearum probable 50S ribosomal subunit protein L16 FT RplP or rsc3012 or rs01077 SWALL:Q8XV19 (EMBL:AL646073) FT (138 aa) fasta scores: E(): 6.2e-46, 86.13% id in 137 aa" FT /db_xref="GOA:Q7W2E9" FT /db_xref="InterPro:IPR000114" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2E9" FT /protein_id="CAE39777.1" FT /translation="MLQPSRRKYRKEQKGRNTGLASRGTHVSFGEFGLKATGRGRLTAR FT QIEAARRAINRHIKRGGRIWIRIFPDKPISQKPAEVRMGNGKGNPEYWVAEIQPGKVLY FT EMEGVSEELAREAFRLAAAKLPISTTFVARHIGA" FT misc_feature 38086..38481 FT /note="HMMPfam hit to PF00252, Ribosomal protein L16, score FT 7.7e-88" FT misc_feature 38260..38295 FT /note="PS00586 Ribosomal protein L16 signature 1." FT misc_feature 38329..38364 FT /note="PS00701 Ribosomal protein L16 signature 2." FT CDS 38513..38704 FT /transl_table=11 FT /gene="rpmC" FT /locus_tag="BPP0037" FT /product="50S ribosomal protein L29" FT /note="ortholog of Bordetella pertussis (BX470248) BP3621" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 50S ribosomal protein L29 RpmC or b3312 or z4683 or FT ecs4177 SWALL:RL29_ECOLI (SWALL:P02429) (63 aa) fasta FT scores: E(): 1.1e-09, 59.67% id in 62 aa, and to Ralstonia FT solanacearum 50S ribosomal protein L29 RpmC or rsc3011 or FT rs01354 SWALL:RL29_RALSO (SWALL:Q8XV20) (64 aa) fasta FT scores: E(): 3.7e-14, 76.19% id in 63 aa" FT /db_xref="GOA:Q7W2E8" FT /db_xref="InterPro:IPR018254" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2E8" FT /protein_id="CAE39778.1" FT /translation="MKASELRSKDAAELGKELESLLKAQFGLRMQKATQQLANTSQLRN FT VRRDIARVRTLLTEKAGK" FT misc_feature 38519..38698 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00831, Ribosomal L29 protein, score FT 1.3e-14" FT misc_feature 38627..38671 FT /note="PS00579 Ribosomal protein L29 signature." FT CDS 38706..38987 FT /transl_table=11 FT /gene="rpsQ" FT /locus_tag="BPP0038" FT /product="30S ribosomal protein S17" FT /note="ortholog of Bordetella pertussis (BX470248) BP3622" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 30S ribosomal protein S17 RpsQ or neaa or b3311 or FT z4681 or ecs4176 SWALL:RS17_ECOLI (SWALL:P02373) (83 aa) FT fasta scores: E(): 5.3e-15, 57.14% id in 77 aa, and to FT Ralstonia solanacearum probable 30S ribosomal subunit FT protein S17 RpsQ or rsc3010 or rs01078 SWALL:Q8XV21 FT (EMBL:AL646073) (89 aa) fasta scores: E(): 3.5e-22, 75.3% FT id in 81 aa" FT /db_xref="GOA:Q7W2E7" FT /db_xref="InterPro:IPR019979" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2E7" FT /protein_id="CAE39779.1" FT /translation="MSETQNTQVAKRQRTLVGKVVSNKMDKTVVVLVERRVKHPIFGKI FT IMRSAKYKAHDESNQYNEGDTVEIAEGRPISRSKAWRVVRLVEAARVI" FT misc_feature 38757..38963 FT /note="HMMPfam hit to PF00366, Ribosomal protein S17, score FT 7.3e-32" FT misc_feature 38895..38933 FT /note="PS00056 Ribosomal protein S17 signature." FT CDS complement(join(39153..39911,39915..40016)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0039" FT /product="putative hydrolase (Pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP3623" FT /note="Pseudogene. This CDS has an in-frame stop codon. FT Similar to Acidovorax sp. SA1 D-(-)-3-hydroxybutyrate FT oligomer hydrolase SWALL:Q9F1T8 (EMBL:AB044565) (291 aa) FT fasta scores: E(): 1.2e-63, 58.09% id in 284 aa" FT /db_xref="PSEUDO:CAE39780.1" FT misc_feature complement(39177..39851) FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold, FT score 7.6e-07" FT variation complement(39912..39914) FT /note="In-frame TAG stop codon in parapertussis; TGG in FT pertussis and bronchiseptica" FT CDS complement(40103..41530) FT /transl_table=11 FT /locus_tag="BPP0040" FT /product="putative aldehyde dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3624" FT /note="Similar to Escherichia coli O157:H7 FT succinate-semialdehyde dehydrogenase, NADP-dependent FT activity GabD or z3959 or ecs3522 SWALL:Q8X950 FT (EMBL:AE005495) (482 aa) fasta scores: E(): 3.7e-75, 43.34% FT id in 473 aa, and to Acinetobacter sp., and Acinetobacter FT sp. NCIMB9871 6-oxohexanoate dehydrogenase ChnE FT SWALL:Q9R2F4 (EMBL:AB006902) (477 aa) fasta scores: E(): FT 6e-117, 60.75% id in 474 aa" FT /db_xref="GOA:Q7W2E6" FT /db_xref="HSSP:1A4S" FT /db_xref="InterPro:IPR016162" FT /db_xref="UniProtKB/TrEMBL:Q7W2E6" FT /protein_id="CAE39781.1" FT /translation="MYEQLALYIDGEFLTGDGRRTQDVVNPATLEVLGQLPHASEADLD FT RALAAAQRAFETWKRTSPMERAAILRKVGQLSRDRAQEIGRNMTLDQGKPLAEAVGEVA FT SCSEHADWHAEECRRIYGRVIPPRNPDVRQFVVREPIGVCAAFTPWNFPYNQAIRKIAA FT ALGAGCTVVLKGPEDSPSAVMAIARMFHEAGLPKGCLNIVWGEPAKISDYLIRSPIVRK FT VSFTGSVPVGKQLAALAGAHMKRVTMELGGHSPVLVFDDADVDRAAEMLERFKVRNAGQ FT VCVSPTRFYVQNGAYEQFLARFTEVLKNIKVGDGLEKGTDMGPLAHERRVPAMSTFVDD FT ALKHGGKVVLGGDAPDRKGYFFSPTVVTELPDNAMLMTEEPFGPLAPVVRFTDTDEVLR FT RANSLPFGLSSYVFTNSLKTATKVSNALEAGMVNINHFGSALAETPFGGIKDSGIGSEG FT GLETFDGYLVTKYITHI" FT misc_feature complement(40109..41497) FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family, score 1.6e-173" FT CDS 42425..42793 FT /transl_table=11 FT /gene="rplN" FT /locus_tag="BPP0041" FT /product="50S ribosomal protein L14" FT /note="ortholog of Bordetella pertussis (BX470248) BP3626" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 50S ribosomal protein L14 RplN or b3310 or z4680 or FT ecs4175 SWALL:RL14_ECOLI (SWALL:P02411) (123 aa) fasta FT scores: E(): 8.2e-35, 76.42% id in 123 aa, and to Ralstonia FT solanacearum probable 50S ribosomal subunit protein L14 FT RplN or rsc3009 or rs01079 SWALL:Q8XV22 (EMBL:AL646073) FT (122 aa) fasta scores: E(): 3.3e-40, 89.34% id in 122 aa" FT /db_xref="GOA:Q7W2E5" FT /db_xref="HSSP:1C04" FT /db_xref="InterPro:IPR019972" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2E5" FT /protein_id="CAE39782.1" FT /translation="MIQMQTTLDVADNTGARAVMCIKVLGGSKRRYAGIGDIIKVSVKD FT AAPRGRVKKGEIYNAVVVRTAKGVRRKDGSLIRFGGNAAVLLNAKLEPIGTRIFGPVTR FT ELRTERFMKIVSLAPEVL" FT misc_feature 42425..42787 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00238, Ribosomal protein L14p/L23e, FT score 4.9e-72" FT misc_feature 42602..42682 FT /note="PS00049 Ribosomal protein L14 signature." FT CDS 42804..43124 FT /transl_table=11 FT /gene="rplX" FT /locus_tag="BPP0042" FT /product="50S ribosomal protein L24" FT /note="ortholog of Bordetella pertussis (BX470248) BP3627" FT /note="Similar to Escherichia coli, Escherichia coli FT O157:H7, and Salmonella typhimurium 50S ribosomal protein FT L24 RplX or b3309 or z4679 or ecs4174 or stm3429 FT SWALL:RL24_ECOLI (SWALL:P02425) (103 aa) fasta scores: E(): FT 7.9e-18, 58.58% id in 99 aa, and to Ralstonia solanacearum FT probable 50S ribosomal subunit protein L24 RplX or rsc3008 FT or rs01081 SWALL:Q8XV23 (EMBL:AL646073) (102 aa) fasta FT scores: E(): 2.4e-19, 60.57% id in 104 aa" FT /db_xref="GOA:Q7W2E4" FT /db_xref="InterPro:IPR005825" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2E4" FT /protein_id="CAE39783.1" FT /translation="MNNIRKGDEVIVLTGRDKKRRGTVLARVDADHVLVEGVNVVKKHV FT KANPMANNPGGIVEKTMPIHVSNVALFNPATGKGDRVGVQEVDGRKVRVFRSNGAVVGA FT KA" FT misc_feature 42813..42911 FT /note="HMMPfam hit to PF00467, KOW motif, score 0.00028" FT CDS 43137..43676 FT /transl_table=11 FT /gene="rplE" FT /locus_tag="BPP0043" FT /product="50S ribosomal protein L5" FT /note="ortholog of Bordetella pertussis (BX470248) BP3628" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 50S ribosomal protein l5 RplE or b3308 or z4678 or FT ecs4173 SWALL:RL5_ECOLI (SWALL:P02389) (178 aa) fasta FT scores: E(): 2.8e-48, 63.84% id in 177 aa, and to Ralstonia FT solanacearum probable 50S ribosomal subunit protein l5 RplE FT or rsc3007 or rs01082 SWALL:Q8XV24 (EMBL:AL646073) (180 aa) FT fasta scores: E(): 3.7e-59, 85.39% id in 178 aa" FT /db_xref="GOA:Q7W2E3" FT /db_xref="InterPro:IPR002132" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2E3" FT /protein_id="CAE39784.1" FT /translation="MSRLQEFYKSKVVADLQAKFGYKCVMEVPRITKITLNMGVSEAVA FT DKKVIEHAVSDLTKISGQKPVVTKTRKAIAGFKIRENYPIGCMVTLRGQRMYEFLDRLV FT AVALPRVRDFRGISGRAFDGRGNYNIGVKEQIIFPEIEYDKIDALRGLNISITTTAKTD FT DEAKALLTAFSFPFRN" FT misc_feature 43209..43376 FT /note="HMMPfam hit to PF00281, Ribosomal protein L5, score FT 8.5e-25" FT misc_feature 43305..43355 FT /note="PS00358 Ribosomal protein L5 signature." FT misc_feature 43386..43670 FT /note="HMMPfam hit to PF00673, ribosomal L5P family FT C-terminus, score 4.2e-51" FT CDS 43689..43994 FT /transl_table=11 FT /gene="rpsN" FT /locus_tag="BPP0044" FT /product="30S ribosomal protein S14" FT /note="ortholog of Bordetella pertussis (BX470248) BP3629" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 30s ribosomal protein S14 RpsN or b3307 or z4677 or FT ecs4172 SWALL:RS14_ECOLI (SWALL:P02370) (100 aa) fasta FT scores: E(): 3e-22, 64% id in 100 aa, and to Ralstonia FT solanacearum 30s ribosomal protein S14 RpsN or rsc3006 or FT rs01083 SWALL:RS14_RALSO (SWALL:Q8XV25) (101 aa) fasta FT scores: E(): 8.3e-29, 78.21% id in 101 aa" FT /db_xref="GOA:Q7W2E2" FT /db_xref="InterPro:IPR018271" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2E2" FT /protein_id="CAE39785.1" FT /translation="MAKLSLINRDIKRAKLADKYAAKRAELKAIIDDQSKTDEERYQAR FT LKLQQLPRNANPTRQRNRCVVTGRPRGVFRKFGLTRHKLREMAMKGEVPGMTKASW" FT misc_feature 43689..43988 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00253, Ribosomal protein S14p/S29e, FT score 1.7e-49" FT CDS 44005..44400 FT /transl_table=11 FT /gene="rpsH" FT /locus_tag="BPP0045" FT /product="30S ribosomal protein S8" FT /note="ortholog of Bordetella pertussis (BX470248) BP3630" FT /note="Similar to Escherichia coli, Escherichia coli FT O157:H7, Salmonella typhimurium, and Salmonella typhi 30s FT ribosomal protein S8 RpsH or b3306 or z4676 or ecs4171 or FT stm3426 or sty4372 SWALL:RS8_ECOLI (SWALL:P02361) (129 aa) FT fasta scores: E(): 1.9e-31, 66.92% id in 130 aa, and to FT Ralstonia solanacearum probable 30s ribosomal subunit FT protein S8 RpsH or rsc3005 or rs01085 SWALL:Q8XV26 FT (EMBL:AL646073) (131 aa) fasta scores: E(): 6.3e-36, 76.33% FT id in 131 aa" FT /db_xref="GOA:Q7W2E1" FT /db_xref="HSSP:1AN7" FT /db_xref="InterPro:IPR000630" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2E1" FT /protein_id="CAE39786.1" FT /translation="MSMSDPIADMLTRIRNAQQVDKTTVTMPASKLKVAIATVLKDEGY FT IDGYSVKGTQAKPELEITLKYYAGRPVIERIERVSRPGLRIYKGRTSIPQVMNGLGVAI FT VSTSRGVMTDRKARANGVGGEVLCYVA" FT misc_feature 44032..44394 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00410, Ribosomal protein S8, score FT 5e-55" FT misc_feature 44305..44358 FT /note="PS00053 Ribosomal protein S8 signature." FT CDS 44411..44944 FT /transl_table=11 FT /gene="rplF" FT /locus_tag="BPP0046" FT /product="50S ribosomal protein L6" FT /note="ortholog of Bordetella pertussis (BX470248) BP3631" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 50s ribosomal protein L6 RplF or b3305 or z4675 or FT ecs4170 SWALL:RL6_ECOLI (SWALL:P02390) (176 aa) fasta FT scores: E(): 5.1e-34, 57.95% id in 176 aa, and to Ralstonia FT solanacearum probable 50s ribosomal subunit protein L6 RplF FT or rsc3004 or rs01086 SWALL:Q8XV27 (EMBL:AL646073) (177 aa) FT fasta scores: E(): 1.4e-42, 67.23% id in 177 aa" FT /db_xref="GOA:Q7W2E0" FT /db_xref="HSSP:1C04" FT /db_xref="InterPro:IPR019906" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2E0" FT /protein_id="CAE39787.1" FT /translation="MSRIAKYPVELPKGVEASIQPDQITVKGPLGTLVQSLTGDVNVAQ FT EDGKLTFVVANDSRHANAMSGTLRALVANMVTGVSKGFERKLNLVGVGYRAQIQGDAVK FT LQLGFSHDVVHQLPAGVKAECPTQTEIVIKGPNKQVVGQVAAEIRKYREPEPYKGKGVR FT YADERVVIKETKKK" FT misc_feature 44441..44938 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00347, Ribosomal protein L6, score FT 4e-71" FT misc_feature 44870..44896 FT /note="PS00525 Ribosomal protein L6 signature 1." FT CDS 44966..45328 FT /transl_table=11 FT /gene="rplR" FT /locus_tag="BPP0047" FT /product="50S ribosomal protein L18" FT /note="ortholog of Bordetella pertussis (BX470248) BP3632" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 50s ribosomal protein L18 RplR or b3304 or z4674 or FT ecs4169 SWALL:RL18_ECOLI (SWALL:P02419) (117 aa) fasta FT scores: E(): 5.9e-19, 57.5% id in 120 aa, and to Ralstonia FT solanacearum probable 50s ribosomal subunit protein L18 FT RplR or rsc3003 or rs01087 SWALL:Q8XV28 (EMBL:AL646073) FT (118 aa) fasta scores: E(): 4.7e-26, 72.5% id in 120 aa" FT /db_xref="GOA:Q7W2D9" FT /db_xref="HSSP:1ILY" FT /db_xref="InterPro:IPR004389" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2D9" FT /protein_id="CAE39788.1" FT /translation="MDKKVSRLRRAVPTRRKIAQLRVHRLSVFRSNLHIYANIISPEGD FT RVLVSASTLEAEVRAQLGGAGKGGNATAAALVGKRVAEKAKAAGIELVAFDRSGFRYHG FT RVKALAEAAREAGLKF" FT misc_feature 44966..45322 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00861, Ribosomal L18p/L5e family, FT score 2.7e-39" FT CDS 45344..45868 FT /transl_table=11 FT /gene="rpsE" FT /locus_tag="BPP0048" FT /product="30S ribosomal protein S5" FT /note="ortholog of Bordetella pertussis (BX470248) BP3633" FT /note="Similar to Escherichia coli, Escherichia coli FT O157:H7, Salmonella typhimurium, and Salmonella typhi 30s FT ribosomal protein S5 RpsE or Spc or b3303 or z4673 or FT ecs4168 or stm3423 or sty4375 SWALL:RS5_ECOLI FT (SWALL:P02356) (166 aa) fasta scores: E(): 6.2e-36, 65.64% FT id in 163 aa, and to Ralstonia solanacearum probable 30s FT ribosomal subunit protein S5 RpsE or rsc3002 or rs01088 FT SWALL:Q8XV29 (EMBL:AL646073) (172 aa) fasta scores: E(): FT 3.1e-46, 77.19% id in 171 aa" FT /db_xref="GOA:Q7W2D8" FT /db_xref="HSSP:1FKA" FT /db_xref="InterPro:IPR018192" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2D8" FT /protein_id="CAE39789.1" FT /translation="MATKVQGKHAAEKENDDGLREKMIAVNRVSKVVKGGRTMSFAALS FT VVGDGDGRIGMGKGKAREVPVSVQKAMEQARRGMFKVALKNGTLHHTVVGKHGASTVLI FT SPAAEGTGVIAGGPMRAIFEVMGVRNVVAKSLGSSNPYNLVRATLNGLRASLTPAEVAA FT KRGKSVEEILG" FT misc_feature 45395..45595 FT /note="HMMPfam hit to PF00333, Ribosomal protein S5, FT N-terminal domain, score 1.1e-25" FT misc_feature 45620..45841 FT /note="HMMPfam hit to PF03719, Ribosomal protein S5, FT C-terminal domain, score 2.9e-26" FT CDS 45872..46057 FT /transl_table=11 FT /gene="rpmD" FT /locus_tag="BPP0049" FT /product="50S ribosomal protein L30" FT /note="ortholog of Bordetella pertussis (BX470248) BP3634" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 50s ribosomal protein L30 RpmD or b3302 or z4672 or FT ecs4167 SWALL:RL30_ECOLI (SWALL:P02430) (58 aa) fasta FT scores: E(): 2.6e-07, 49.12% id in 57 aa, and to Ralstonia FT solanacearum probable 50s ribosomal subunit protein L30 FT RpmD or rsc3001 or rs01089 SWALL:Q8XV30 (EMBL:AL646073) (60 FT aa) fasta scores: E(): 2.6e-13, 67.24% id in 58 aa" FT /db_xref="GOA:Q7W2D7" FT /db_xref="HSSP:1BXY" FT /db_xref="InterPro:IPR000517" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2D7" FT /protein_id="CAE39790.1" FT /translation="MAQKQIKVTLVRSVIGTKQSHRDTIRGLGLRRINSSRVLVDTPEV FT RGMIHKVGYLVSVSEA" FT misc_feature 45881..46039 FT /note="HMMPfam hit to PF00327, Ribosomal protein L30p/L7e, FT score 3.1e-15" FT CDS 46067..46507 FT /transl_table=11 FT /gene="rplO" FT /locus_tag="BPP0050" FT /product="50S ribosomal protein L15" FT /note="ortholog of Bordetella pertussis (BX470248) BP3635" FT /note="Similar to Escherichia coli 50s ribosomal protein FT L15 RplO or b3301 SWALL:RL15_ECOLI (SWALL:P02413) (144 aa) FT fasta scores: E(): 2.4e-27, 60.56% id in 142 aa, and to FT Ralstonia solanacearum probable 50s ribosomal subunit FT protein L15 RplO or rsc3000 or rs01090 SWALL:Q8XV31 FT (EMBL:AL646073) (143 aa) fasta scores: E(): 1.5e-34, 73.42% FT id in 143 aa" FT /db_xref="GOA:Q7W2D6" FT /db_xref="InterPro:IPR005749" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2D6" FT /protein_id="CAE39791.1" FT /translation="MSDIQLNTLKPAEGSKHAKRRVGRGIGSGLGKTAGRGHKGQKSRS FT GGFHKVGFEGGQMPLQRRLPKRGFTPLGQHLYAEVRPSELQLMEAEEIDVQALKAAGVV FT GQSVRYAKVIKSGELSRKVVLRGITATAGARAAIEAAGGSLA" FT misc_feature 46076..46378 FT /note="HMMPfam hit to PF01305, Ribosomal protein L15 amino FT terminal region, score 5.3e-48" FT misc_feature 46400..46495 FT /note="HMMPfam hit to PF00256, Ribosomal protein L15, score FT 1e-05" FT CDS 46522..47847 FT /transl_table=11 FT /gene="secY" FT /gene_synonym="prlA" FT /locus_tag="BPP0051" FT /product="preprotein translocase SecY subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP3636" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 preprotein translocase SecY subunit secy or prla or FT b3300 or z4670 or ecs4165 SWALL:SECY_ECOLI (SWALL:P03844) FT (443 aa) fasta scores: E(): 7.7e-114, 66.74% id in 442 aa, FT and to Ralstonia solanacearum probable preprotein FT translocase SecY or rsc2999 or rs01096 SWALL:Q8XV32 FT (EMBL:AL646073) (448 aa) fasta scores: E(): 1.4e-134, FT 76.59% id in 440 aa" FT /db_xref="GOA:Q7W2D5" FT /db_xref="InterPro:IPR002208" FT /db_xref="UniProtKB/TrEMBL:Q7W2D5" FT /protein_id="CAE39792.1" FT /translation="MAKAQALGKTGARYGDLKRRLVFLVLALVVYRLGTHIPVPGINPD FT ALADLFRQHEGGILGLFNMFSGGALSRFSIFALGIMPYISASIIMQLMSVVVPSLEALK FT KEGEAGRRKITQYTRYGTVVLALVQAVGISVALESQPGLVIDPGMLFRFTTVVTLVTGT FT MFVMWLGEQITERGLGNGISILIFAGIVAGLPSALAGLLDLVRTNSMSVLSALFIVALV FT VLVTAFVVFVERGQRKITVNYAKCQVGNKVYGGQSSHLPLKLNMAGVIPPIFASSIILF FT PATITSWFSSGERMAWLHDLAAALEPRQPLYITLYSVAIIFFCFFYTALVFNSRETADN FT LKKSGAFVPGIRPGEQTARYIDKILMRLTLAGAIYITLVCLLPEFLVMRWNVPFYFGGT FT SLLIIVVVTMDFMAQVQAYMMSHQYDSLLKKANFKGSGLPMR" FT misc_feature join(46582..46650,46744..46812,46870..46938,46966..47034, FT 47053..47121,47149..47217,47326..47394,47452..47520, FT 47611..47679,47692..47760) FT /note="10 probable transmembrane helices predicted for FT BPP0051 by TMHMM2.0 at aa 21-43, 75-97, 117-139, 149-171, FT 178-200, 210-232, 269-291, 311-333, 364-386 and 391-413" FT misc_feature 46741..46800 FT /note="PS00755 Protein secY signature 1." FT misc_feature 46741..47763 FT /note="HMMPfam hit to PF00344, eubacterial secY protein, FT score 1.1e-177" FT misc_feature 47023..47079 FT /note="PS00756 Protein secY signature 2." FT misc_feature 47047..47103 FT /note="PS00095 C-5 cytosine-specific DNA methylases FT C-terminal signature." FT CDS 47857..48075 FT /transl_table=11 FT /gene="infA" FT /locus_tag="BPP0052" FT /product="translation initiation factor IF-1" FT /note="ortholog of Bordetella pertussis (BX470248) BP3637" FT /note="Similar to Escherichia coli, Escherichia coli FT O157:H7, Salmonella typhimurium, and Salmonella typhi FT translation initiation factor IF-1 InfA or b0884 or z1228 FT or ecs0969 or stm0953 or sty0951 SWALL:IF1_ECOLI FT (SWALL:P02998) (71 aa) fasta scores: E(): 5.4e-19, 74.64% FT id in 71 aa, and to Ralstonia solanacearum translation FT initiation factor IF-1 InfA1 or rsc2998 or rs01113 FT SWALL:IF11_RALSO (SWALL:Q8XV33) (72 aa) fasta scores: E(): FT 3e-26, 94.44% id in 72 aa" FT /db_xref="GOA:Q7W2D4" FT /db_xref="InterPro:IPR004368" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2D4" FT /protein_id="CAE39793.1" FT /translation="MSKDDVIQMQGEVLENLPNATFRVKLENGHVVLGHISGKMRMHYI FT RILPGDKVTVELTPYDLTRARIVFRSK" FT misc_feature 47860..48069 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00575, S1 RNA binding domain, score FT 3.4e-07" FT CDS 48110..48223 FT /transl_table=11 FT /gene="rpmJ" FT /locus_tag="BPP0053" FT /product="50S ribosomal protein l36" FT /note="ortholog of Bordetella pertussis (BX470248) BP3638" FT /note="Similar to Escherichia coli, Escherichia coli FT O157:H7, Salmonella typhimurium, and Salmonella typhi 50s FT ribosomal protein L36 RpmJ or b3299 or z4669 or ecs4164 or FT stm3419 or sty4379 SWALL:RL36_ECOLI (SWALL:P21194) (38 aa) FT fasta scores: E(): 9e-12, 71.05% id in 38 aa, and to FT Ralstonia solanacearum probable 50s ribosomal subunit FT protein L36 RpmJ or rsc2997 or rs01115 SWALL:Q8XV34 FT (EMBL:AL646073) (38 aa) fasta scores: E(): 5.6e-14, 86.84% FT id in 38 aa" FT /db_xref="GOA:Q7W2D3" FT /db_xref="HSSP:1DFE" FT /db_xref="InterPro:IPR000473" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2D3" FT /protein_id="CAE39794.1" FT /translation="MKVMASVKRICRNCKVIKRHGVVRVICTDPRHKQRQG" FT misc_feature 48110..48217 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00444, Ribosomal protein L36, score FT 8.7e-16" FT misc_feature 48140..48217 FT /note="PS00828 Ribosomal protein L36 signature." FT CDS 48265..48630 FT /transl_table=11 FT /gene="rpsM" FT /locus_tag="BPP0054" FT /product="30S ribosomal protein S13" FT /note="ortholog of Bordetella pertussis (BX470248) BP3639" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 30s ribosomal protein S13 RpsM or b3298 or z4668 or FT ecs4163 SWALL:RS13_ECOLI (SWALL:P02369) (117 aa) fasta FT scores: E(): 2e-25, 60.17% id in 113 aa, and to Ralstonia FT solanacearum probable 30s ribosomal subunit protein S13 FT RpsM or rsc2996 or rs01356 SWALL:Q8XV35 (EMBL:AL646073) FT (121 aa) fasta scores: E(): 3.8e-31, 69.42% id in 121 aa" FT /db_xref="GOA:Q7W2D2" FT /db_xref="InterPro:IPR018269" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2D2" FT /protein_id="CAE39795.1" FT /translation="MARIAGINIPPQQHAEIGLTAIFGIGRTRARKICEAAGVPVTKKV FT KDLTDAELERIREHIGVFAVEGDLRREVQLSIKRLIDLGTYRGMRHKRGLPVRGQRTRT FT NARTRKGPRRAAASLKK" FT misc_feature 48271..48588 FT /note="HMMPfam hit to PF00416, Ribosomal protein S13/S18, FT score 2.4e-50" FT misc_feature 48523..48564 FT /note="PS00646 Ribosomal protein S13 signature." FT CDS 48646..49047 FT /transl_table=11 FT /gene="rpsK" FT /locus_tag="BPP0055" FT /product="30S ribosomal protein S11" FT /note="ortholog of Bordetella pertussis (BX470248) BP3640" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 30s ribosomal protein S11 RpsK or b3297 or z4667 or FT ecs4162 SWALL:RS11_ECOLI (SWALL:P02366) (128 aa) fasta FT scores: E(): 1.5e-35, 73.17% id in 123 aa, and to Neisseria FT meningitidis 30s ribosomal protein S11 RpsK or nma0105 or FT nmb0166 SWALL:Q9JQR2 (EMBL:AL162752) (131 aa) fasta scores: FT E(): 8.1e-42, 86.46% id in 133 aa" FT /db_xref="GOA:Q7W2D1" FT /db_xref="InterPro:IPR018102" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2D1" FT /protein_id="CAE39796.1" FT /translation="MAKASTSGASRVRKKVKKNVSDGIAHVHASFNNTIITITDRQGNA FT LSWATSGGAGFKGSRKSTPFAAQVAAETAGRVAMEYGIKTLEVRIKGPGPGRESSVRAL FT NALGIKISSIADITPVPHNGCRPPKRRRI" FT misc_feature 48712..49041 FT /note="HMMPfam hit to PF00411, Ribosomal protein S11, score FT 9.4e-68" FT misc_feature 48946..49014 FT /note="PS00054 Ribosomal protein S11 signature." FT CDS 49059..49682 FT /transl_table=11 FT /gene="rpsD" FT /gene_synonym="ramA" FT /locus_tag="BPP0056" FT /product="30S ribosomal protein S4" FT /note="ortholog of Bordetella pertussis (BX470248) BP3641" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 30s ribosomal protein S4 RpsD or RamA or b3296 or FT z4666 or ecs4161 SWALL:RS4_ECOLI (SWALL:P02354) (205 aa) FT fasta scores: E(): 2e-48, 64.56% id in 206 aa, and to FT Ralstonia solanacearum probable 30s ribosomal subunit FT protein S4 RpsD or rsc2994 or rs01120 SWALL:Q8XV37 FT (EMBL:AL646073) (207 aa) fasta scores: E(): 1.2e-58, 76.81% FT id in 207 aa" FT /db_xref="GOA:P0A4C7" FT /db_xref="InterPro:IPR002942" FT /db_xref="UniProtKB/Swiss-Prot:P0A4C7" FT /protein_id="CAE39797.1" FT /translation="MARYIGPKCKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTS FT GARTSDYGLQLREKQKLKRMYGVLEKQFRKYFVEAERRRGNTGETLIQLLESRLDNVVY FT RMGFGSTRAEARQLVSHRAIELNGHTADIASMLVKAGDVISIREKAKKQGRIRESLDLA FT ASIGLPQWVEVDASKMTGTFKSAPDRADVARDVNESMVVELYSR" FT misc_feature 49059..49346 FT /note="HMMPfam hit to PF00163, Ribosomal protein S4/S9 FT N-terminal domain, score 5.2e-33" FT misc_feature 49341..49415 FT /note="PS00632 Ribosomal protein S4 signature." FT misc_feature 49347..49490 FT /note="HMMPfam hit to PF01479, S4 domain, score 4.2e-18" FT CDS 49897..50883 FT /transl_table=11 FT /gene="rpoA" FT /locus_tag="BPP0057" FT /product="DNA-directed RNA polymerase alpha chain" FT /EC_number="2.7.7.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP3642" FT /note="Identical to Bordetella pertussis DNA-directed RNA FT polymerase alpha chain RpoA SWALL:RPOA_BORPE (SWALL:P37368) FT (328 aa) fasta scores: E(): 8.4e-122, 100% id in 328 aa" FT /db_xref="GOA:P0A4E7" FT /db_xref="HSSP:1LB2" FT /db_xref="InterPro:IPR011773" FT /db_xref="UniProtKB/Swiss-Prot:P0A4E7" FT /protein_id="CAE39798.1" FT /translation="MSTQGFLKPRSIEVEPVGAHHAKIVMEPFERGYGHTLGNALRRIL FT LSSMTGYAPTEVQMTGVVHEYSTIAGVREDVVDILLNLKGVVFKLHNRDEVTLVLRKNG FT AGAVVASDIELPHDVEIINPDHLICNLTDAGKIEMQVKVEKGRGYVPGNVRALSEDRTH FT TIGRIVLDASFSPVRRVSYAVESARVEQRTDLDKLVLDIETNGVISPEEAVRQAARILM FT DQISVFAALEGAGDAYEPPVRGTPQIDPVLLRPVDDLELTVRSANCLKAENIYYIGDLI FT QRTENELLKTPNLGRKSLNEIKEVLAARGLTLGMKLENWPPLGLERP" FT misc_feature 49957..50571 FT /note="HMMPfam hit to PF01000, Bacterial RNA polymerase, FT alpha chain, N terminal domain, score 6.5e-104" FT misc_feature 50617..50820 FT /note="HMMPfam hit to PF03118, Bacterial RNA polymerase, FT alpha chain C terminal domain, score 1.9e-26" FT CDS 51042..51437 FT /transl_table=11 FT /locus_tag="BPP0058" FT /product="50S ribosomal protein L17" FT /note="ortholog of Bordetella pertussis (BX470248) BP3643" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 50s ribosomal protein L17 RplQ or b3294 or z4664 or FT ecs4159 SWALL:RL17_ECOLI (SWALL:P02416) (127 aa) fasta FT scores: E(): 9.6e-32, 68.5% id in 127 aa, and to Neisseria FT meningitidis 50s ribosomal protein L17 nmb0169 SWALL:Q9K1I1 FT (EMBL:AE002374) (122 aa) fasta scores: E(): 4.7e-35, 75.41% FT id in 122 aa" FT /db_xref="GOA:Q7W2D0" FT /db_xref="HSSP:1GD8" FT /db_xref="InterPro:IPR000456" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2D0" FT /protein_id="CAE39799.1" FT /translation="MRHGNGLRKLNRTSSHRLAMFRNMAVSLITHEAIKTTLPKAKELR FT RVIEPLITLGKEPTLANKRLAFARLRDRDAVVKLFAEIGPRYANRNGGYTRVLKMGFRQ FT GDNAPMAFMELVDRPEVDASEADSDAE" FT misc_feature 51099..51389 FT /note="HMMPfam hit to PF01196, Ribosomal protein L17, score FT 4.3e-57" FT misc_feature 51141..51209 FT /note="PS01167 Ribosomal protein L17 signature." FT CDS complement(51566..52003) FT /transl_table=11 FT /locus_tag="BPP0059" FT /product="histidine triad protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3644" FT /note="Similar to Halobacterium sp. histidine triad protein FT Hit1 or vng2186G SWALL:Q9HNA0 (EMBL:AE005106) (142 aa) FT fasta scores: E(): 6.5e-11, 38.73% id in 111 aa, and to FT Salmonella typhimurium putative diadenosine tetraphosphate FT Stm3167 SWALL:Q8ZM04 (EMBL:AE008845) (151 aa) fasta scores: FT E(): 1.2e-10, 34.74% id in 118 aa" FT /db_xref="GOA:Q7W2C9" FT /db_xref="HSSP:1AV5" FT /db_xref="InterPro:IPR011151" FT /db_xref="UniProtKB/TrEMBL:Q7W2C9" FT /protein_id="CAE39800.1" FT /translation="MSHDCLFCRISREEIPAHVIHQDSRLLAFLDIHPVRPGHVLIIPR FT QHYPYFEDMPADLAGHILNLGQRLARHMKRLYSVERVGFAFTGIHVAHAHAHLIPMHHP FT QDVTSTQYIEQKDLTFVMPPQSPPEQLASVAQDLRAALTKA" FT misc_feature complement(51680..52000) FT /note="HMMPfam hit to PF01230, HIT family, score 2.5e-13" FT CDS 52110..52451 FT /transl_table=11 FT /gene="cutA" FT /gene_synonym="cycY" FT /gene_synonym="cutA1" FT /locus_tag="BPP0060" FT /product="putative periplasmic divalent cation tolerance FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3645" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 periplasmic divalent cation tolerance protein CutA FT or CycY or CutA1 or b4137 or z5742 or ecs5118 FT SWALL:CUTA_ECOLI (SWALL:P36654) (112 aa) fasta scores: E(): FT 1.1e-10, 38.54% id in 96 aa, and to Methanopyrus kandleri FT uncharacterized protein implicated in tolerance to divalent FT cations CutA or mk1492 SWALL:AAM02705 (EMBL:AE010440) (102 FT aa) fasta scores: E(): 1.7e-15, 50% id in 100 aa" FT /db_xref="GOA:Q7W2C8" FT /db_xref="HSSP:1NAQ" FT /db_xref="InterPro:IPR004323" FT /db_xref="UniProtKB/TrEMBL:Q7W2C8" FT /protein_id="CAE39801.1" FT /translation="MLRDDDVVLVISNAPDMLLAKRMAHVLVEDGLAACVNLGAPVLSV FT YRWKGEVEGADEIPLWIKTTYARHQAVVQTLAQLHPYEVPEIIVLPVIGGIASYLDWVR FT EQSSGVDSQ" FT misc_feature 52128..52433 FT /note="HMMPfam hit to PF03091, CutA1 divalent ion tolerance FT protein, score 1e-26" FT CDS 52462..54399 FT /transl_table=11 FT /locus_tag="BPP0061" FT /product="thiol:disulfide interchange protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3646" FT /note="Similar to Pseudomonas aeruginosa thiol:disulfide FT interchange protein precursor DsbB1 or DipZ or pa4845 FT SWALL:DSD1_PSEAE (SWALL:Q9HUW5) (591 aa) fasta scores: E(): FT 4e-53, 41.54% id in 609 aa, and to Ralstonia solanacearum FT thiol:disulfide interchange protein dsbd precursor DsbD or FT rsc2990 or rs01128 SWALL:Q8XV41 (EMBL:AL646073) (608 aa) FT fasta scores: E(): 2.6e-76, 50.48% id in 618 aa" FT /db_xref="GOA:Q7W2C7" FT /db_xref="HSSP:1JPE" FT /db_xref="InterPro:IPR013766" FT /db_xref="UniProtKB/TrEMBL:Q7W2C7" FT /protein_id="CAE39802.1" FT /translation="MMQYGHASATGHGASATGRAAAAGRWLAWMLALALVLFARPAAAL FT TEDDFLPPEQAFVFSAAMADPATLVLNYRIAPEYYMYRERFGLSASPAQAVTLGEAAYP FT QGKVKYDPTFDKDMEVFYGTVAVRVPLSQGNGQPFTLTVTSQGCADAGLCYPPMDNTVQ FT LTPVAGGYALAAGTASAPQGGGTFDSLLEAGDTRLADFIGGGGWLKTAGVFLLLGMLLA FT FTPCVLPMVPILSSIVLGGAQAQRPSRWRGLGLAAAYVFGMSVVYTALGVAAGLSGAGL FT AAWLQTPWILSLFAILLAVLALAMFGAFTFQMPAGLQARLSERSNRIPGGRVTGALVMG FT ALSALIVGPCVAAPLAGALLYISQTGDVILGGAALFAMAWGMGIPLLLVGASAGTLLPR FT TGPWMESVKRVFGMLLLGTAWWMLIPVVPTWVQMLGWSFLAVVGAVMLRAFDALPAGSG FT APRMFAKGLGLLLALAGAAWLIGALSGGRDVLAPLSHLAARAPAGGAVAAAGPAAVDKT FT RFVRVRSNAELDALLARSTQPVMLDFYADWCVSCREMEHFTFSDPTVAARMSQMLLVQA FT DVTKNNADDRALLKRFRLFGPPGIMFFEPGGKLIEDIRVVGFQDARRFAGVLEQVADRS FT GAPGPAQAGS" FT misc_feature join(52522..52590,53110..53178,53215..53283,53326..53394, FT 53467..53535,53563..53631,53689..53748,53758..53811, FT 53848..53916) FT /note="9 probable transmembrane helices predicted for FT BPP0061 by TMHMM2.0 at aa 21-43, 217-239, 252-274, 289-311, FT 336-358, 368-390, 410-429, 433-450 and 463-485" FT misc_feature 53101..53733 FT /note="HMMPfam hit to PF02683, Cytochrome C biogenesis FT protein transmembrane region, score 2.9e-06" FT misc_feature 54079..54135 FT /note="PS00194 Thioredoxin family active site." FT CDS 54440..55477 FT /transl_table=11 FT /locus_tag="BPP0062" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3647" FT /note="Similar to Bacillus halodurans hypothetical protein FT Bh1741 SWALL:Q9KC33 (EMBL:AP001513) (306 aa) fasta scores: FT E(): 9.7e-23, 33.21% id in 283 aa, and to Listeria FT monocytogenes hypothetical protein Lmo0495 SWALL:Q8Y9N0 FT (EMBL:AL591975) (319 aa) fasta scores: E(): 2.8e-23, 30.58% FT id in 291 aa" FT /db_xref="GOA:Q7W2C6" FT /db_xref="InterPro:IPR000620" FT /db_xref="UniProtKB/TrEMBL:Q7W2C6" FT /protein_id="CAE39803.1" FT /translation="MGERLVRCCPYQPRRRDPVASHPSSHYVSTAIASPANVGRVYLQL FT LLVMAAWGVNLVAVKYLTFHMDVQVVAAVRIVVAFVAVSAILLWRLHGVPRLSLRQFGW FT LACAGLLVVYAHQILLVNALRLTPAANATLIMATSPLFSVVLAAFFYRERLTASRIGGA FT ALGLGGVALVVAGGDGVLASVGRGDVLALCAVIVFVIGGLIIQRVSRALDPLTILWYMY FT LVGAVTLSAHAAFSPATYLASSWTLEPWPWLVVLFSSVIASGVSNLLWNAGIARLGMSR FT AAMFVNWLPIFGLLAAAVFLGERITALHFAGLACVLSGTWLGLRTAPAPAAGQADARPA FT RARRA" FT misc_feature join(54560..54628,54641..54709,54743..54811,54824..54892, FT 54917..54985,54998..55066,55085..55144,55187..55255, FT 55289..55342,55352..55411) FT /note="10 probable transmembrane helices predicted for FT BPP0062 by TMHMM2.0 at aa 41-63, 68-90, 102-124, 129-151, FT 160-182, 187-209, 216-235, 250-272, 284-301 and 305-324" FT misc_feature 54587..54964 FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6, score 8.9e-21" FT misc_feature 55025..55414 FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6, score 6.4e-19" FT CDS complement(55474..56490) FT /transl_table=11 FT /gene="hemB" FT /locus_tag="BPP0063" FT /product="putative delta-aminolevulinic acid dehydratase" FT /EC_number="4.2.1.24" FT /note="ortholog of Bordetella pertussis (BX470248) BP3648" FT /note="Similar to Pseudomonas aeruginosa FT delta-aminolevulinic acid dehydratase HemB or Pa5243 FT SWALL:HEM2_PSEAE (SWALL:Q59643) (337 aa) fasta scores: E(): FT 6.4e-78, 65.15% id in 330 aa, and to Ralstonia solanacearum FT probable delta-aminolevulinic acid dehydratase protein HemB FT or rsc2989 or rs01152 SWALL:Q8XV42 (EMBL:AL646073) (331 aa) FT fasta scores: E(): 5.4e-96, 78.35% id in 328 aa" FT /db_xref="GOA:Q7W2C5" FT /db_xref="HSSP:1B4K" FT /db_xref="InterPro:IPR013785" FT /db_xref="UniProtKB/TrEMBL:Q7W2C5" FT /protein_id="CAE39804.1" FT /translation="MKPQIISAAFPVSRPRRLRRDDFTRRLVRENTLTANDLIYPVFVT FT EGKGIQQAVPSLPGVVRYSLDTLLPVAEQCVKLGIPVLSLFPAIEPALKTPDGIEAANP FT EGLIPRVVGELKKRFPELGVLTDVALDPYTSHGQDGVIDPAGYVLNEPTVEILIKQALV FT QAAAGVDIVAPSDMMDGRIGAIRQALEDQQHIHTRIMAYSAKYASAFYGPFRDAVGSAS FT NLGKSDKMAYQMDPGNIDEALREVAADLQEGADMVMVKPGMPYLDVVRRVKDAFRVPTF FT AYQVSGEYAMIKAAAANGWLDHDKVMMEALLGFKRAGADGVLTYFALEAATLLQQQR" FT misc_feature complement(55486..56478) FT /note="HMMPfam hit to PF00490, Delta-aminolevulinic acid FT dehydratase, score 7.5e-194" FT misc_feature complement(55696..55734) FT /note="PS00169 Delta-aminolevulinic acid dehydratase active FT site." FT CDS complement(56487..57110) FT /transl_table=11 FT /locus_tag="BPP0064" FT /product="putative GTP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3649" FT /note="Similar to Pseudomonas aeruginosa probable FT GTP-binding protein EngB or pa5492 SWALL:ENGB_PSEAE FT (SWALL:Q9HT81) (215 aa) fasta scores: E(): 3.7e-26, 44.39% FT id in 205 aa, and to Ralstonia solanacearum probable FT GTP-binding protein Rsc2988 or Rs01211 SWALL:Q8XV43 FT (EMBL:AL646073) (234 aa) fasta scores: E(): 4.7e-35, 49.76% FT id in 215 aa" FT /db_xref="GOA:Q7W2C4" FT /db_xref="InterPro:IPR002917" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2C4" FT /protein_id="CAE39805.1" FT /translation="MSLLHRASFYISAARLDQLPPAGAPEVCFVGRSNAGKSSAINVLC FT NQRRLAFSSKTPGRTRLINMFGLPDPLAPGEQLGFLVDLPGYGYASVAHREKEKWADIL FT GGYLRDRASLAGIVLLIDIRRGVTDLDRRLTNFIAPTGRPVLALLTKADKLPYGQRMRT FT VFAVRKDLADIGALHMVPFSSTERIGLEEAGAHIENWISPKVVP" FT misc_feature complement(56997..57020) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 57334..58035 FT /transl_table=11 FT /locus_tag="BPP0065" FT /product="putative cytochrome C precursor" FT /note="ortholog of Bordetella pertussis (BX470248) BP3650" FT /note="Similar to Azotobacter vinelandii cytochrome C4 FT precursor CycA SWALL:CYC4_AZOVI (SWALL:P43302) (210 aa) FT fasta scores: E(): 5.7e-18, 40.2% id in 194 aa, and to FT Ralstonia solanacearum probable oxidoreductase cytochrome FT C-type signal peptide protein rsc2987 or rs01225 FT SWALL:Q8XV44 (EMBL:AL646073) (219 aa) fasta scores: E(): FT 4.5e-20, 45.92% id in 233 aa" FT /db_xref="GOA:Q7W2C3" FT /db_xref="HSSP:1CNO" FT /db_xref="InterPro:IPR009056" FT /db_xref="UniProtKB/TrEMBL:Q7W2C3" FT /protein_id="CAE39806.1" FT /translation="MKRVLSRMLVASGLVLGASVHSMSFAADGAAGPAKPDAAKGAQLY FT DQGDASRGVIACASCHGAAGSSTIPANPNLAAQPHEYLVKQLTEFKVKEGEKLPLRMGP FT GGNPTPMTAMAQPLTAQDMQNVALYLSQPPLKEPATAGHENLVELGQKIWRGGLADRNV FT PACAACHGATGAGIPGQYPRLSGQFSSYIEEQLKLFRSGERGNSVPMHDIADRMSDADI FT KAVADYAAGLR" FT misc_feature 57334..57411 FT /note="Signal peptide predicted for BPP0065 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.914 between residues 26 and 27" FT misc_feature 57439..57735 FT /note="HMMPfam hit to PF00034, Cytochrome c, score 0.00018" FT misc_feature 57502..57519 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature 57799..58029 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00034, Cytochrome c, score 0.18" FT misc_feature 57829..57846 FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT CDS 58153..60249 FT /transl_table=11 FT /locus_tag="BPP0066" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3651" FT /note="Similar to Ralstonia solanacearum putative FT cytochrome c-type biogenesis transmembrane protein rsc2986 FT or rs01235 SWALL:Q8XV45 (EMBL:AL646073) (700 aa) fasta FT scores: E(): 9.2e-84, 46.53% id in 692 aa, and to Neisseria FT meningitidis cytochrome c-type biogenesis protein, putative FT nmb1804 SWALL:Q9JY04 (EMBL:AE002530) (671 aa) fasta scores: FT E(): 2.6e-47, 37.98% id in 695 aa" FT /db_xref="InterPro:IPR007816" FT /db_xref="UniProtKB/TrEMBL:Q7W2C2" FT /protein_id="CAE39807.1" FT /translation="MNATSTAPSSRHTLRSLAGDVFELLGSMRFAVSLLMFICIASIVG FT TVLAQNRPSNVYVDQFGPFWFEVFDKFSIWHVYNSWWFLLIMTFLVVSTSVCLIRNTPK FT MLREARSFREHVRASSLRAFPHRLQTEVAQPVSETAQGVTGLLGQFGYAVRERRDGDGI FT MLAAKKGSANRLGYIFAHSAMVIICIGGLLDSEAPVRLQVLFDGKQPIAINGEMARADI FT PDSALLSVNNPSYRANLWVPEGSNASLATIAVNDRSLVQPLPFSLRLKKFTVDYYSTGM FT PSRFLSLVEVTDPETGEMFDQTIEVNEPLRYKGVTVYQSSFDDGGSSVSLTGYPLVGAG FT DTPFKVDGVVGQTSEIGARIGDQPKSMKIEFTALRVINVEDFSGGQPGAQNLSLREHVA FT SVAGSAAGKKNENLRNVGPRIDYKLIDDAGQAHEFQNYMLPVVLDGVPVFLSAVRNNPA FT DDFQYLRIPADDQGSLAEFMRLRAALADPAARQEAARRFAERNAPSGTDRQPLETAAQR FT ALATFAEGGLQAIADFLQANTAPDDLERAAGIVVRLVGASVAELRDIARARAGLPALPQ FT SGPQADEAAQWSRVAVAALSDLAFYPAPVMFSLTDFQERQGSVFQVARTPGKNAVYLGC FT VLLILGIFAMFYIRDRRVWVWVKPAADGAGSSIEAAMTSQKRTLDFNQEFDRLREALLR FT QSKP" FT misc_feature join(58240..58299,58381..58449,58675..58731,60040..60096) FT /note="4 probable transmembrane helices predicted for FT BPP0066 by TMHMM2.0 at aa 30-49, 77-99, 175-193 and FT 630-648" FT CDS 60259..61593 FT /transl_table=11 FT /locus_tag="BPP0067" FT /product="putative cytochrome c asssembly protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3652" FT /note="Similar to Neisseria meningitidis cytochrome c-type FT biogenesis protein, putative nmb1803 SWALL:Q9JY05 FT (EMBL:AE002530) (395 aa) fasta scores: E(): 1.3e-42, 48.81% FT id in 422 aa" FT /db_xref="GOA:Q7W2C1" FT /db_xref="InterPro:IPR017562" FT /db_xref="UniProtKB/TrEMBL:Q7W2C1" FT /protein_id="CAE39808.1" FT /translation="MSSTTSNSAAAWTSGFSPTGDGRAQRGRPDWTDIAFFLLLAAGAG FT FALTRFSGAMDYYEKLILCGTVPALAWLGWLWRPLRHLMIACALAAGLALLLYQNDLAR FT AEQVFFLKYLLSSQSAILWMSALFVLAMLCYWIGILSPTAAWLGTALTWGAVFAGTTGL FT LVRWREGHLMGPDLGHIPVSNLYEVFVLFALITALFYLYYERKYATRALGGFVLLVITS FT ATIFLLWYSFTRDAGQIQPLVPALKSWWMKLHVPANFIGYGTFSLAAMVGFAYLVKQHG FT QTTSWLKLAPLFVLGVALCVEPIVFRTEGLSATWMIYCGAGVVIVGGILLARARIAQAL FT PSLEVLDDIMYRAIAIGFAFFTVATVLGALWAADAWGAYWQWDPKETWALIVWLNYAAW FT LHMRLIKGLRGTMAAYWSLVGLLITGFAFLGVNMFLSGLHSYGEL" FT misc_feature join(60358..60417,60427..60486,60505..60558,60616..60675, FT 60694..60753,60796..60864,60889..60957,61021..61089, FT 61108..61176,61189..61257,61318..61377,61420..61473, FT 61492..61560) FT /note="13 probable transmembrane helices predicted for FT BPP0067 by TMHMM2.0 at aa 34-53, 57-76, 83-100, 120-139, FT 146-165, 180-202, 211-233, 255-277, 284-306, 311-333, FT 354-373, 388-405 and 412-434" FT misc_feature 60838..61515 FT /note="HMMPfam hit to PF01578, Cytochrome C assembly FT protein, score 8.1e-13" FT CDS complement(61664..62953) FT /transl_table=11 FT /gene="lysA" FT /locus_tag="BPP0068" FT /product="diaminopimelate decarboxylase" FT /EC_number="4.1.1.20" FT /note="ortholog of Bordetella pertussis (BX470248) BP3653" FT /note="Similar to Pseudomonas aeruginosa diaminopimelate FT decarboxylase LysA or pa5277 SWALL:DCDA_PSEAE FT (SWALL:P19572) (415 aa) fasta scores: E(): 2.4e-93, 62.8% FT id in 414 aa, and to Vibrio cholerae diaminopimelate FT decarboxylase LysA or vc0125 SWALL:DCDA_VIBCH FT (SWALL:Q9KVL7) (417 aa) fasta scores: E(): 1.7e-92, 59.28% FT id in 420 aa" FT /db_xref="GOA:Q7W2C0" FT /db_xref="HSSP:1HKV" FT /db_xref="InterPro:IPR002986" FT /db_xref="UniProtKB/TrEMBL:Q7W2C0" FT /protein_id="CAE39809.1" FT /translation="MTAVSVQPDLAGSPHFRYQNGVLHAEDVPLDSLAAQLGTPLYVYS FT RAALRSAWETYRDAIGERPVLVCFGMKANSNLAVLKEFARLGAGFDIVSGGELARVLAV FT GGDPAKVVFSGVGKQAWEMRAALEADVKCFNVESEAELERLSDVAVSMGRRARVSLRVN FT PDVDAQTHPYISTGLKENKFGIAIESAPAAYRLAARLPGVEVVGVDCHIGSQLTDISPY FT FDALEKLLDLIEQLAENGIAIKHLDLGGGLGIRYTDEIPPSPKALLDRVFERINARGLG FT HLHIVLEPGRSLVGNAGVLLTTVQYLKHAEARNFAIVDAAMNDLLRPALYEAYHGVQPV FT TPRADKRIEYDVVGPVCESADWLARGRALAIQAGDVLAVESAGAYSMVMASNYNTRVRA FT AEVMVDGNRHYIVRQRETLESLYQGESTLP" FT misc_feature complement(61739..62059) FT /note="HMMPfam hit to PF00278, Pyridoxal-dependent FT decarboxylase, C-terminal sheet domain, score 8.9e-30" FT misc_feature complement(62066..62821) FT /note="HMMPfam hit to PF02784, Pyridoxal-dependent FT decarboxylase, pyridoxal binding domain, score 6e-93" FT misc_feature complement(62195..62236) FT /note="PS00879 Orn/DAP/Arg decarboxylases family 2 FT signature 2." FT CDS 63167..63496 FT /transl_table=11 FT /gene="cyaY" FT /locus_tag="BPP0069" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3654" FT /note="Similar to Escherichia coli CyaY protein or b3807 FT SWALL:CYAY_ECOLI (SWALL:P27838) (106 aa) fasta scores: E(): FT 1.1e-12, 37.03% id in 108 aa, and to Ralstonia solanacearum FT CyaY protein or rsc2977 or rs01320 SWALL:CYAY_RALSO FT (SWALL:Q8XV54) (113 aa) fasta scores: E(): 5.4e-17, 50.46% FT id in 107 aa" FT /db_xref="InterPro:IPR002908" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2B9" FT /protein_id="CAE39810.1" FT /translation="MTETEFLALVDQVLDSIESQADDWAAGLDVDIEATRSGNVLTLVF FT EDGTQVVVNAQAAMQELWVAARSGGFHYRYDGQHWNDTRGGPRLPDALSQICSEAAGVP FT VSVRL" FT misc_feature 63167..63490 FT /note="HMMPfam hit to PF01491, Frataxin-like domain, score FT 2.3e-25" FT CDS complement(63553..65997) FT /transl_table=11 FT /locus_tag="BPP0070" FT /product="penicillin-binding protein 1A" FT /EC_number="2.4.2.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3655" FT /note="Similar to Escherichia coli penicillin-binding FT protein 1A MrcA or PonA or b3396 SWALL:PBPA_ECOLI FT (SWALL:P02918) (850 aa) fasta scores: E(): 2.2e-84, 37.45% FT id in 841 aa, and to Ralstonia solanacearum probable FT penicillin-binding 1 MrcA or rsc2976 or rs01357 FT SWALL:Q8XV55 (EMBL:AL646073) (801 aa) fasta scores: E(): FT 1.5e-161, 53.19% id in 782 aa" FT /db_xref="GOA:Q7W2B8" FT /db_xref="InterPro:IPR001460" FT /db_xref="UniProtKB/TrEMBL:Q7W2B8" FT /protein_id="CAE39811.1" FT /translation="MSKRQNSTKQDKPAKSGSAILRFFLKAGIFFGGLALCGVLLAGMA FT LALAWPNLPDLHAMTDYRPRVPLRVYTADRVLIGEFGEERRNVLRFNEIPDVMKSAVLA FT AEDDRFYQHGGIDWMGVIRAGLTNLISMSKSQGASTITMQVARNFYLSSEKTYSRKFYE FT LLLTFKIESQLTKDQILELYMNQIYLGHRAYGFAAASRTYFGKPLSQVTPSEAAMLAGI FT PKAPSRFNPISNRPRAELRQRYVLGRMYSLGYLTEPEYKEAMAQPIVIKSAEGTPAGGY FT AIHGEYVAELARQLLYNVYQDNLYSRGINIYTTVQSKDQESAYRAVRDGVLEYTRRAPY FT PGPEEQLDMPAGVENDPQALDEFLDGVFDKFSDSGDLLTAVVLSASPTEIKLVRSSREV FT ISITDKKALGVVARALTDKAKPEMRLKRGSVVYIHKYNDNWEVINMPAVQAAFVALSPQ FT DGAIRAMVGGFDFYRGNFNRVTQAWRQPGSNIKPFIYAASLERGLTPATQISDQPFELS FT AAQTGSKAWHPKNYGNQYEPMLTMRQGLYKSKNMVSIRILQAIGPQYAQDYLTRFGFDK FT ARQPAVLPLALGAGSVTPLQLAGAYAVFANGGYRITPYLIDRVTDSSGKVLMQSRPVIA FT GDAAARAIDARTAFVMDDMLRGVATSGTAARARATLKRSDVAGKTGTTNESVDAWFSGY FT TPSLVATAWLGFDQPKSLGSRETGGGVAMPIWLDYMKDALKGVPEEKQRPRPDGLLVEN FT GELYFSEFPPGQAVARLGLPQAGDALGDFLNGLTGGNDNSIRVAPGVGTQGSQPWSQNI FT PF" FT misc_feature complement(63814..64785) FT /note="HMMPfam hit to PF00905, Penicillin binding protein FT transpeptidase domain, score 1.6e-28" FT misc_feature complement(65290..65796) FT /note="HMMPfam hit to PF00912, Transglycosylase, score FT 5e-89" FT misc_feature complement(65857..65997) FT /note="Signal peptide predicted for BPP0070 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.985) with cleavage site FT probability 0.675 between residues 56 and 57" FT CDS 66111..66746 FT /transl_table=11 FT /gene="aroK" FT /locus_tag="BPP0071" FT /product="shikimate kinase I" FT /EC_number="2.7.1.71" FT /note="ortholog of Bordetella pertussis (BX470248) BP3656" FT /note="Similar to Escherichia coli shikimate kinase I AroK FT or b3390 SWALL:AROK_ECOLI (SWALL:P24167) (172 aa) fasta FT scores: E(): 5.3e-23, 45.78% id in 166 aa, and to Ralstonia FT solanacearum probable shikimate kinase I AroK or rsc2970 or FT rs01327 SWALL:Q8XV61 (EMBL:AL646073) (190 aa) fasta scores: FT E(): 2e-32, 59.75% id in 164 aa" FT /db_xref="GOA:Q7W2B7" FT /db_xref="HSSP:1KAG" FT /db_xref="InterPro:IPR000623" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2B7" FT /protein_id="CAE39812.1" FT /translation="MNASANLCAASANDPQPGDQEAAHPVACAGDEPAAFLPHDLPIFL FT VGMMGAGKTTIGRGLARALRREFIDLDHELEARCGVRVPVIFEIEGEAGFRRREAAALQ FT ECTQRRQIILATGGGAVLAAENRQALRERGIVIYLRASVEELFRRTSRDRNRPLLATAD FT PRATLRELMVAREPLYNEVADLVIDTGSMPIATLVKSLLPKLQAYEKK" FT misc_feature 66231..66728 FT /note="HMMPfam hit to PF01202, Shikimate kinase, score FT 1.1e-59" FT misc_feature 66249..66272 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 66396..66473 FT /note="PS01128 Shikimate kinase signature." FT CDS 66746..67822 FT /transl_table=11 FT /gene="aroB" FT /locus_tag="BPP0072" FT /product="3-dehydroquinate synthase" FT /EC_number="4.2.3.4" FT /note="ortholog of Bordetella pertussis (BX470248) BP3657" FT /note="Similar to Escherichia coli 3-dehydroquinate FT synthase AroB or b3389 SWALL:AROB_ECOLI (SWALL:P07639) (362 FT aa) fasta scores: E(): 1.4e-64, 53.33% id in 345 aa, and to FT Neisseria gonorrhoeae 3-dehydroquinate synthase AroB FT SWALL:AROB_NEIGO (SWALL:O50468) (359 aa) fasta scores: E(): FT 1.6e-69, 54.34% id in 357 aa" FT /db_xref="GOA:Q7W2B6" FT /db_xref="InterPro:IPR016037" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2B6" FT /protein_id="CAE39813.1" FT /translation="MDVVEVATPGGSYPIHIGPGRLDALDASIPADATAIAVVTNPTVA FT GLYGARVEAALARTGKRVLRIELPDGEAHKDWQTLNLIFDALLENRLDRRAVLVALGGG FT VIGDMTGFAAAVYMRGIRFVQVPTTLLAQVDSSVGGKTAVNHPLGKNMIGAFYQPVAVE FT IDTEVLGTLPAREVSAGLAEVIKYGLILDAGFWQWCEDNVGALRALEPRALAYAIRRSC FT ELKAQVVGQDERESGLRAILNLGHTFGHAIESGLGYGEWLHGEAVGCGMVQAAELSTLA FT AGFPAADVQRVRDLVREIGCPTVAPDLGAERWLALMQVDKKTEGGEIRFVLMPRIGQAL FT SRAAPEADVRTALERTTR" FT misc_feature 66791..67807 FT /note="HMMPfam hit to PF01761, 3-dehydroquinate synthase, FT score 5e-168" FT misc_feature 67031..67099 FT /note="1 probable transmembrane helix predicted for BPP0072 FT by TMHMM2.0 at aa 96-118" FT misc_feature 67223..67243 FT /note="PS00307 Legume lectins beta-chain signature." FT CDS 67819..68973 FT /transl_table=11 FT /locus_tag="BPP0073" FT /product="putative phosphohydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3658" FT /note="Similar to Escherichia coli FT deoxyguanosinetriphosphate triphosphohydrolase Dgt or b0160 FT SWALL:DGTP_ECOLI (SWALL:P15723) (504 aa) fasta scores: E(): FT 0.00035, 25.37% id in 469 aa, and to Ralstonia solanacearum FT deoxyguanosinetriphosphate triphosphohydrolase-like protein FT rsc2968 or rs01329 SWALL:Q8XV63 (EMBL:AL646073) (387 aa) FT fasta scores: E(): 1.1e-97, 69.43% id in 373 aa" FT /db_xref="GOA:Q7W2B5" FT /db_xref="InterPro:IPR006674" FT /db_xref="UniProtKB/Swiss-Prot:Q7W2B5" FT /protein_id="CAE39814.1" FT /translation="MNKDGTVVLMNELASYASDPSKTRGRRHSEPPPENRTEFQRDRDR FT IIHSNAFRRLEYKTQVFVNHEGDLFRTRLTHSLEVAQIARTLARSLRVSEDLTEAIALA FT HDLGHTPFGHAGQDELNACMRELAPQAGGFEHNLQSLRVVDELEERYAEFNGLNLCFET FT REGILKHCSATHARQLGAVGERFLDRTQPSLEAQLANLADEVAYNNHDVDDGLRSGLIT FT LEQLQEVGIFARHYAEVARRYPQLAPRRATSETIRRMINTLIVDLTATSLARIRDHAPA FT SADDVRRAPPLAGFSAAVRREADELKKFLFDNLYRHYRVVRMTTKVQRIVRELFQAFLG FT DPRLLPPDYRREQPQDQARAISDYIAGMTDRYAIREHRRLFEMG" FT misc_feature 68035..68442 FT /note="HMMPfam hit to PF01966, HD domain, score 4e-14" FT CDS complement(join(69147..69530,69533..69808)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0074" FT /product="putative glutathione S-transferase (Pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP3659" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 92. Similar to Dianthus FT caryophyllus glutathione s-transferase 1 Gst1 or carsr8 FT SWALL:GTZ1_DIACA (SWALL:P28342) (221 aa) fasta scores: E(): FT 2.4e-07, 31.6% id in 174 aa, and to Rhizobium meliloti FT putative glutathione s-transferase protein Gst8 or r03265 FT or smc03882 SWALL:Q92L24 (EMBL:AL591793) (215 aa) fasta FT scores: E(): 2.4e-35, 50.23% id in 211 aa" FT /db_xref="PSEUDO:CAE39815.1" FT variation complement(69533..69544) FT /note="(GC)6 in parapertussis; (GC)5 in pertussis and FT bronchiseptica" FT misc_feature complement(69581..69808) FT /note="HMMPfam hit to PF02798, Glutathione S-transferase, FT N-terminal domain, score 2.2e-08" FT CDS complement(69864..72722) FT /transl_table=11 FT /gene="uvrA" FT /locus_tag="BPP0075" FT /product="excinuclease ABC subunit A" FT /note="ortholog of Bordetella pertussis (BX470248) BP3660" FT /note="Similar to Haemophilus influenzae excinuclease ABC FT subunit A UvrA or hi0249 SWALL:UVRA_HAEIN (SWALL:P44410) FT (943 aa) fasta scores: E(): 0, 64.91% id in 949 aa, and to FT Escherichia coli excinuclease ABC subunit A UvrA or DinE or FT b4058 SWALL:UVRA_ECOLI (SWALL:P07671) (940 aa) fasta FT scores: E(): 0, 65.12% id in 949 aa" FT /db_xref="GOA:Q7W2B4" FT /db_xref="InterPro:IPR004602" FT /db_xref="UniProtKB/TrEMBL:Q7W2B4" FT /protein_id="CAE39816.1" FT /translation="MDAIRIRGARTHNLKNVSLDLPRHQLVVVTGLSGSGKSSLAFDTL FT YAEGQRRYVESLSAYARQFLQLMDKPDVDLIEGLSPAISIEQKSAGHNPRSTVGTITEI FT HDYLRLLYARVGTPYCPDHGLPLQAQSVGQMVDAVLAWPAEARLAVLAPIARARKGSFE FT DELASLQAQGFVRLRVDGQLQEIEQLPALKKTEKHDLDVVIDRLRIRPESQQRLAESFE FT TALQLAEGRAIALDMDSGREQVFSSRYACPICSHSLAELEPRLFSFNNPMGACPGCDGI FT GQVGFFDPKRVVAFPELSLAAGAIRGWDRRNSFTHSLLTSLATHYEFDIDTPFEELPAE FT VREKVLHGSGEEEIAFFYVNEKGRSTVKRHPFEGVIPNLERRWRETDSATVREELGKYR FT NIKTCPDCGGSRLRPEARNVLIGSEPREGERHGQAIFEVESMPLSVCLDWFRQLQLTGA FT KQEIAQRIVREIEARLSFLNNVGLNYLSLDRSADTISGGEAQRIRLASQIGSGLTGVMY FT VLDEPSIGLHQRDNDRLIGTLQHLRDLGNSVIVVEHDEDMIRCADWVVDMGPGAGEHGG FT QVVAQGTPEAVQTDQQSLTGQYLSGARAIEIPARRPVADDQPWLHLSGATGNNLKSVDL FT RIPAARLVCVTGVSGSGKSTLVNDTLAVALARQLNHAQGEPAPYAGLAGLEHFDKTISV FT DQSPIGRTPRSNPATYTGLFTPIRELFAGVPEARARGYDPGRFSFNVKGGRCEACQGDG FT VVKVEMHFLPDMYVPCDVCHGKRYNRETLEIRYRGRNISEVLDLTVEQALEYFESVPAI FT ARKLHTLIDVGLSYIRLGQSATTLSGGEAQRVKLSLELSRRSTGRTLYILDEPTTGLHF FT HDIELLLKVLNQLVDSGNTVLIIEHNLDVIKTADWLVDMGPEGGDGGGRVVAQGTPEQV FT AASPDSHTGHYLGRVLRNGKRR" FT misc_feature complement(69990..70805) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1e-27" FT misc_feature complement(70173..70217) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(70401..70418) FT /note="PS00190 Cytochrome c family heme-binding site FT signature." FT misc_feature complement(70761..70784) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature complement(71013..71675) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 4.4e-06" FT misc_feature complement(71199..71243) FT /note="PS00211 ABC transporters family signature." FT misc_feature complement(72609..72632) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 72878..74062 FT /transl_table=11 FT /locus_tag="BPP0076" FT /product="putative transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3661" FT /note="Similar to Escherichia coli tetracycline resistance FT protein, class c TetA SWALL:TCR3_ECOLI (SWALL:P02981) (396 FT aa) fasta scores: E(): 8.8e-11, 27.04% id in 392 aa, and to FT Ralstonia solanacearum putative multidrug-efflux FT transporter transmembrane protein rsc0421 or rs03389 FT SWALL:Q8Y2B5 (EMBL:AL646059) (387 aa) fasta scores: E(): FT 6.1e-67, 52.48% id in 383 aa" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7W2B3" FT /protein_id="CAE39817.1" FT /translation="MPADQKLQLTRSERRASVALAGLFACRMLGLFLLLPVFAVAARDL FT PGGNDPARVGLALGMYGLTQAFMQIPFGLASDRWGRRPVVVAGLVLFIIGSVVCALADD FT VYWITLGRAIQGAGAISAAVTAWLADATRDEVRTRAMAMVGGLIGLSFAVSLVAAPVLV FT GWWGLSGLFWTIACLGLASLAVARWMVPVVPRTEARTMQGASARAVLLHADLLRLNFGV FT FVLHLIQVALFVVTPSLLARLGGLDARDLWRVYLPVILVSFVLMVPAVFVAEKRRAHRA FT ALRAAVAGLIVVCALLPLAAHGFYALALALTGFFVAFNILEALQPSLVSRVAPAQYKGL FT ALGFYNTAQAAGLFAGGALGGWLAASGGADAVYIAAAALAALWLAVTWALRPLR" FT misc_feature 72878..73000 FT /note="Signal peptide predicted for BPP0076 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.975) with cleavage site FT probability 0.391 between residues 41 and 42" FT misc_feature join(72926..72994,73037..73105,73124..73183,73193..73261, FT 73295..73363,73391..73459,73520..73588,73631..73699, FT 73718..73777,73787..73840,73901..73969,73979..74047) FT /note="12 probable transmembrane helices predicted for FT BPP0076 by TMHMM2.0 at aa 17-39, 54-76, 83-102, 106-128, FT 140-162, 172-194, 215-237, 252-274, 281-300, 304-321, FT 342-364 and 368-390" FT misc_feature 72929..74056 FT /note="HMMPfam hit to PF00083, Sugar (and other) FT transporter, score 0.0021" FT CDS 74295..74783 FT /transl_table=11 FT /gene="ssb" FT /locus_tag="BPP0077" FT /product="single-strand binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3662" FT /note="Similar to Proteus mirabilis single-strand binding FT protein Ssb SWALL:SSB_PROMI (SWALL:P28046) (173 aa) fasta FT scores: E(): 1.9e-26, 56.47% id in 170 aa, and to Serratia FT marcescens single-strand binding protein Ssb FT SWALL:SSB_SERMA (SWALL:P25762) (175 aa) fasta scores: E(): FT 1.2e-24, 55.49% id in 173 aa" FT /db_xref="GOA:P59928" FT /db_xref="InterPro:IPR011344" FT /db_xref="UniProtKB/Swiss-Prot:P59928" FT /protein_id="CAE39818.1" FT /translation="MASVNKVILVGNLGRDPEVRYSPDGAAICNVSIATTSQWKDKASG FT ERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEGRLKTRKWQDKDTGADRYSTEIVAD FT QMQMLGGRDSGGGYGGGYDDAPRQQRAPAQRPAAAPQRPAPQAAPAANLADMDDDIPF" FT misc_feature 74304..74342 FT /note="PS00735 Single-strand binding protein family FT signature 1." FT misc_feature 74304..74624 FT /note="HMMPfam hit to PF00436, Single-strand binding FT protein family, score 2.3e-61" FT misc_feature 74445..74474 FT /note="PS00736 Single-strand binding protein family FT signature 2." FT misc_feature complement(74832..74838) FT /note="duplication due to IS1001 insertion" FT repeat_region 74839..74851 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS1001 element" FT repeat_region complement(74839..75000) FT CDS complement(74842..76062) FT /transl_table=11 FT /locus_tag="BPP0078" FT /product="transposase" FT /note="transposase for IS1001 element" FT /db_xref="GOA:Q7TTN6" FT /db_xref="InterPro:IPR002560" FT /db_xref="UniProtKB/TrEMBL:Q7TTN6" FT /protein_id="CAE39819.1" FT /translation="MLDRKLLESLGGWQGYGVERVEWPEDPGRTLSIYLKPTAKVMLCE FT QCGARCRQVHETTVRRVRDLPLFEYRVVLHVPRRRLWCEQCGGPRLERLAWLGRYQRVT FT DRLAQACSQLLQSSNVQAVARFFELGWHTVKTLDKARLRASVREPDWSKIEYLAMDEFA FT LHKGHRYATVVVDPIGRQVLWIGPGRSRETARAFFEQLPPGAAQRIKAVAIDMTTAYEL FT EIQAHSPQAEIVYDLFHVVAKYGREVIDRVRVDQANQLRQDRPARRIIKSSRWLLLRNR FT DNLDRQQAVRLDELLQANQPLLTVYVLRDELKRLWFYQRPAWARQAWNHWYEQAEQSGI FT AALNTFAQRLKGYLHGILARCRHPLNTSIVEGINNTIKVIKRRAYGYRDQEYFFLKIRA FT AFPGNAR" FT misc_feature complement(74983..75972) FT /note="HMMPfam hit to PF01610, Transposase, score 7.9e-128" FT repeat_region complement(75001..76145) FT repeat_region complement(76133..76145) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS1001 element" FT misc_feature complement(76146..76152) FT /note="duplication due to IS1001 insertion" FT CDS 76330..78444 FT /transl_table=11 FT /gene="bfrC" FT /locus_tag="BPP0079" FT /product="ferric siderophore receptor" FT /note="ortholog of Bordetella pertussis (BX470248) BP3663" FT /note="Similar to Bordetella bronchiseptica unidentified FT ferric siderophore receptor BfrC SWALL:P94274 (EMBL:U79564) FT (724 aa) fasta scores: E(): 0, 99.43% id in 704 aa" FT /db_xref="GOA:Q7W2B1" FT /db_xref="InterPro:IPR010105" FT /db_xref="UniProtKB/TrEMBL:Q7W2B1" FT /protein_id="CAE39820.1" FT /translation="MPALFMLALGAVAAGARAQSAAAGVPDTQGVAQMPAVTVNAAPVD FT DTLEHLEAPVDTGALGRRTQLETPFSTTVVTARDMEERQVNKLGDVFALDASVTDNSAS FT YGAWASYLTVRGLPLDWQNSYRIDGRPFLSYVTTLPFEHFEQIDLLKGASGFMYGFGSP FT GGLVNYVTKKPTDEAVRSVELGYVSKGLLREHVDLGGRVGESGAFGYRLNATHEEGNTY FT NGGSLYRDSVSLALDARLSDRLTWDFQSIYQDRKAIGQEPTIYAGTMAGSELPSPVRND FT NDRLVGQGPYADNAFRYYSTGLKYQLADEWTLSTNYSYSSTRTRRNESVLFLRDQAGDY FT DDYRSDYGEAYGYNQWQAMLEGKFATGPLKHHVVAGASWQKQKNDYSANGVYQLQGTGN FT LRARNTNTYYSEGQLHLYRAAEITQKALFASDTVDLTGGWSVLGGLRYTNYAQQGFDAT FT GARTSRYDKNGVLTPTFALMYKLTPRTMAYASYIESLEPGSSVGATYANFGALLDPLKS FT KQYELGIKTEQDGWAATAALFRIEKKAEYANAANELVQDGKTLYQGLELGASTRIARDW FT NVGGSLMLLDSEYKKGSDFTGNRVAGAPKFVAAAQLAYSVPQVPGLKLRADVKYTGNTM FT LGASNRVQVDDYAIVNIGATYDTQIHGYEATFTAGINNVANKRYWLYQSSDYVKAGDPR FT TYGLTASLKF" FT misc_feature 76330..76398 FT /note="Signal peptide predicted for BPP0079 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.656 between residues 23 and 24" FT misc_feature 78121..78438 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00593, TonB dependent receptor FT C-terminal region, score 7.2e-22" FT misc_feature 78388..78438 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="PS01156 TonB-dependent receptor proteins signature FT 2." FT CDS 78581..79084 FT /transl_table=11 FT /locus_tag="BPP0080" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3664" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4095 pa4095 SWALL:Q9HWT3 (EMBL:AE004825) (177 aa) FT fasta scores: E(): 1.4e-14, 32.23% id in 152 aa, and to FT Alcaligenes sp 2,4'-dihydroxyacetophenone dioxygenase Dad FT SWALL:Q9REI7 (EMBL:AJ133820) (176 aa) fasta scores: E(): FT 2.5e-12, 31.69% id in 142 aa" FT /db_xref="UniProtKB/TrEMBL:Q7W2B0" FT /protein_id="CAE39821.1" FT /translation="MGHGIAGGTGLAARNEAPELIRALDRDDERCWVPLAPGAWFYPMA FT FDVRNGAWHSVFRVAPGAQLPTHYHLGRVVGCTLRGRWHYRERDWEHRPGSYLLEVPGD FT SHTFEVIGEETVELFTVNEGGFLLLDERGDVTGITDVLLRLEQARAHYERVGLGRAAID FT SLIR" FT CDS 79103..79882 FT /transl_table=11 FT /locus_tag="BPP0081" FT /product="putative aldolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3665" FT /note="Similar to Erwinia chrysanthemi AcsB SWALL:Q93AU1 FT (EMBL:AF416739) (258 aa) fasta scores: E(): 1.9e-18, 32.01% FT id in 253 aa, and to Escherichia coli FT 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase HpcH or FT HpaI SWALL:HPAI_ECOLI (SWALL:Q47098) (262 aa) fasta scores: FT E(): 7.6e-17, 27.55% id in 254 aa" FT /db_xref="GOA:Q7W2A9" FT /db_xref="InterPro:IPR005000" FT /db_xref="UniProtKB/TrEMBL:Q7W2A9" FT /protein_id="CAE39822.1" FT /translation="MTTLKARLRQGQAITMIGNSLPDTYAAEMVASAGFDAVMIDLQHS FT AIGLHEVNDLARAVRAQGCAPVVRVAANDPAAITKVLDGGVDAVVAPMINSAEACRQFI FT SACYYAPLGDRSFGPYLGQVIQRQSIQDYYAQTRDRLLPIAMIENEEGVRQAEQIMRTE FT GLGAIYVGASDLSIAMGMDCVPDYRNARLLDCIKGLIDLGERCGIPVGAFVPTLEDSLM FT LQSLGARILWVGSDQGFIKAGCAARAQQYHAESSPRR" FT misc_feature 79106..79858 FT /note="HMMPfam hit to PF03328, HpcH/HpaI aldolase family, FT score 1.8e-20" FT CDS 79911..80927 FT /transl_table=11 FT /locus_tag="BPP0082" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3666" FT /note="Similar to Pseudomonas sp. hypothetical 35.9 kDa FT protein in tcbD-tcbE intergenic region precursor FT SWALL:YTCB_PSESQ (SWALL:P27103) (336 aa) fasta scores: E(): FT 1.1e-28, 35.31% id in 320 aa, and to Comamonas testosteroni FT OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta FT scores: E(): 1.2e-26, 39.09% id in 266 aa" FT /db_xref="GOA:Q7W2A8" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7W2A8" FT /protein_id="CAE39823.1" FT /translation="MKTLASMVRWPRIAGAVVRQACAAALGLALGAAPALADYPSRPVT FT LVVPSPPGGSTDAIARVLADALGKRLGQSIVIENKGGGGGIVGSSYVLDKPADGHTLLL FT AISSKTVARALQPALAYDPIRDFTAVALVSRVPTVMVTSVAAGLPDFARLKAYIAANPG FT KTAWAVPGIGTAPHLTEHVLMQALGGKVNEIQYRGSAPMHVDLLAGRVDVVVDSYTALR FT QHIDDRKVVPVAVIGRGRIEAMSAVPTLGELGYRTFEEVLFDGWNAIDVRASTPPEVVA FT RLSQALQDVLADRAFRERVVQLGLVPFAPMPASQAQDFVQDVSRVLSPVAASLAAAQ" FT misc_feature 79911..80021 FT /note="Signal peptide predicted for BPP0082 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.995 between residues 37 and 38" FT misc_feature 80085..80918 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 2.5e-59" FT CDS 80981..81775 FT /transl_table=11 FT /locus_tag="BPP0083" FT /product="GntR family regulatory proteins" FT /note="ortholog of Bordetella pertussis (BX470248) BP3667" FT /note="Similar to Deinococcus radiodurans transcriptional FT regulator, GntR-family dra0211 SWALL:Q9RYU6 (EMBL:AE001863) FT (279 aa) fasta scores: E(): 3.1e-07, 28.38% id in 229 aa, FT and to Streptomyces coelicolor putative GntR-family FT regulatory protein sco6974 or sc6f7.27C SWALL:Q9KZB5 FT (EMBL:AL353870) (261 aa) fasta scores: E(): 3.9e-05, 28% id FT in 250 aa" FT /db_xref="GOA:Q7W2A7" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W2A7" FT /protein_id="CAE39824.1" FT /translation="MSASVDVLSLPEVEAAASADTPNLLYWTIYQGLVRSIEADTAAVG FT KDLPIERLISAHYSASRFTVRQALDLLEKRGYIRKQRAKPARVISRSPVVPVERHLRRL FT SDILSPAVIHQTRVTGFGPARHDEAAATLGQAPGAQLYRLQLVHADQAQNIGFSDIYFP FT AHIGQRLSLQDFDAAARNGPLFVYPIVEQKIGFKVDHARINIGAESHARAQRTAVAEAL FT GTAPLVRVQYVFSHAGEPVQFTTNWLDSRFFSVSYELAEGEF" FT misc_feature 81065..81244 FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 5.9e-06" FT CDS complement(81772..82713) FT /transl_table=11 FT /locus_tag="BPP0084" FT /product="transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3668" FT /note="Similar to Ralstonia solanacearum probable FT transcription regulator protein rsc0144 or rs01014 FT SWALL:Q8Y337 (EMBL:AL646057) (321 aa) fasta scores: E(): FT 6.5e-32, 38.26% id in 311 aa, and to Burkholderia cepacia FT DntR SWALL:Q8VUD7 (EMBL:AF169302) (301 aa) fasta scores: FT E(): 3.8e-30, 34.11% id in 299 aa" FT /db_xref="GOA:Q7W2A6" FT /db_xref="InterPro:IPR005119" FT /db_xref="UniProtKB/TrEMBL:Q7W2A6" FT /protein_id="CAE39825.1" FT /translation="MIAKHLDLNLLMIFDAILAEGHVTRAAERLAMSQSAVSKGLAQLR FT QAFGDPLFLRASRGVVPTHRALEIADQVRQAIAALNSLAGPVTEFDARSAHAHFNIGAT FT DYVSFVLLPGLMRRLQETAPHVSLTLHDMESMMPEEMLLAGKVDLVISSVASVNFPIYR FT QELFRDHYVCLCRAGHPALADPVPIEQFVSSRHLAMPRQNGARERVLQDTLQRLGVTRD FT VAVQVPHMLAIPATLTATDLVATMACRVAREFAARHPLQVLAHPLPLPDFPVSQLWHDR FT TRRSPSHQWLRDTVYDLARVNACPAPQDGAPG" FT misc_feature complement(81814..82440) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 1.6e-26" FT misc_feature complement(82513..82692) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 9.9e-23" FT misc_feature complement(82558..82650) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS 82993..84483 FT /transl_table=11 FT /locus_tag="BPP0085" FT /product="putative chlorohydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3669" FT /note="Similar to Pseudomonas sp. hydroxydechloroatrazine FT ethylaminohydrolase AtzB SWALL:ATZB_PSESD (SWALL:P95442) FT (481 aa) fasta scores: E(): 8.8e-07, 24.49% id in 498 aa, FT and to Halobacterium sp. Vng1205C SWALL:Q9HQE0 FT (EMBL:AE005047) (431 aa) fasta scores: E(): 8.2e-20, 29.7% FT id in 478 aa" FT /db_xref="GOA:Q7W2A5" FT /db_xref="InterPro:IPR006680" FT /db_xref="UniProtKB/TrEMBL:Q7W2A5" FT /protein_id="CAE39826.1" FT /translation="MLTQIKGEWVLGFADGNHRMLRDASVVYEGERIVHVGTEFDGVAD FT RVIDARGCLVAPGFIDTHVHSGHRALHKLLADGGRPDLFGQPYMDVTIARDGTRIKGYP FT NYLSREEAAVDPGIALHAAFTVAELLRNGVTTFVELGGHVMVQEALWRECERLGVRGYL FT GAGYDSGRWAADDQGRLRRVPYPDGGDHLFEEAVAFIKRVQAAGNDLVNGILVPREVEN FT CSVDILRRTVQAAQELGVPMATHAGYNVIEFYETVREHRMTPIELLHSVGMLGPRLNIG FT HANLISDSPRLNYSGGRDLALMGEHRVSISHCPINIVRRARVLDSWKKYREAGVNLTIG FT SDTYPRDMVMNMRTASYHGKVMSHDLTAASAAEVFEAATLGGARSLGRTDIGRLEPGAR FT ADVIAINVGRQDVLRYGPIWDPIRSLVECGVGDDVELVVTNGQVRMEQGRIVGVDLGAL FT RAEAQQFADNVWRDLQDWDPLRRTAQAMCPPLFCPDCM" FT misc_feature 83377..84315 FT /note="HMMPfam hit to PF01685, Chlorohydrolase, score FT 2.9e-21" FT CDS 84522..85412 FT /transl_table=11 FT /locus_tag="BPP0086" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3670" FT /note="Similar to Comamonas testosteroni OrfJ protein FT SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 4.8e-28, 37.14% id in 280 aa, and to Agrobacterium FT tumefaciens hypothetical protein atu4727 or agr_l_312 FT SWALL:AAK88723 (EMBL:AE009401) (329 aa) fasta scores: E(): FT 8.6e-27, 39.09% id in 220 aa" FT /db_xref="GOA:Q7W2A4" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7W2A4" FT /protein_id="CAE39827.1" FT /translation="MKKLMQWGAALALAVTCGAAQAGDAVAAYPQRPVRLIVPYGAGGA FT ADVLAHIMAEKLSAIWKQPVIVENKPGGVGTIGIMATVQAEPDGYTLVSVPVSDLAVNP FT HLYRKRPFDVRKDLAPVSQVGAVPNVLLVSNALEVGDVQALVARAAAKPGYLTYSSPGV FT GSQAHIAAEMFAMRAGLSLQHIPYNSVPAALTDVAGGQIDMMFAQLPAVLPFVKSGRVK FT VLAVAADARTPLALREKIAAGIASAIQSPQVREKLAAQGLIGLGGTPQQLEQAWRQDYE FT RYGAAVKAMHIQLLD" FT misc_feature 84522..84587 FT /note="Signal peptide predicted for BPP0086 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.993 between residues 22 and 23" FT misc_feature 84666..85397 FT /note="HMMPfam hit to PF03401, Uncharacterized protein FT family, UPF0065, score 1.5e-51" FT CDS 85565..86710 FT /transl_table=11 FT /locus_tag="BPP0087" FT /product="putative glycosyl transferases" FT /note="ortholog of Bordetella pertussis (BX470248) BP3671" FT /note="Similar to Xylella fastidiosa hypothetical protein FT Xf1470 SWALL:Q9PDA9 (EMBL:AE003977) (376 aa) fasta scores: FT E(): 6.3e-28, 43.31% id in 374 aa, and to Rhizobium FT meliloti putative glycosyltransferase protein r01229 or FT smc01790 SWALL:Q92QS8 (EMBL:AL591786) (414 aa) fasta FT scores: E(): 3.4e-18, 30.12% id in 395 aa" FT /db_xref="GOA:Q7W2A3" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7W2A3" FT /protein_id="CAE39828.1" FT /translation="MSQPHPLRFAHAEAAIGFGGQEQRILKEALAMRERGHHVELICRP FT QARLIERARDAGIRVHTVPMGGLRNFVRGVPRVRRILREGGFDVLNTHSRIDTLLAGAG FT ARLAGTPLVVRTRHLSNRVNSMLSYTWIPHRVSTVSDHVRRYLIERGVSPAHIETIYSP FT INLPPPGLRSTLRDELGLPADAVVVACVAIMRATKGHRELIEALRPLMASRPQVHLVLV FT GNGSPLFEQLQALIAELGLGERIHMLGFRDDVPNVLAGSDIFALPTRKEASGTVFVEAA FT ACGLPVVGVDVGGVSEMLRNGETGLLVPPDDAAALQGALRSLIDDASLRARMGGAGERM FT VRDEGKFSLARLAERTELVYRKWLAERRDAPTAASRSARQS" FT misc_feature 86075..86584 FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1, score 8.2e-43" FT CDS 86717..87535 FT /transl_table=11 FT /locus_tag="BPP0088" FT /product="hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3672" FT /note="Weakly similar to Escherichia coli hypothetical FT protein YrbL or b3207 SWALL:YRBL_ECOLI (SWALL:P46021) (210 FT aa) fasta scores: E(): 0.031, 25.88% id in 197 aa, and to FT Salmonella typhimurium, and Salmonella typhi putative FT cytoplasmic protein YrbL or stm3325 or sty3504 SWALL:Q8XFU2 FT (EMBL:AE008853) (210 aa) fasta scores: E(): 0.049, 25.47% FT id in 212 aa" FT /db_xref="InterPro:IPR019647" FT /db_xref="UniProtKB/TrEMBL:Q7W2A2" FT /protein_id="CAE39829.1" FT /translation="MSIPTSRLAAVQALPQDIAPQTPRDRMPAVLPVMDVVPAATDWPP FT FAVVDLLGATLLATGSERDVYHHPGNAALLIKIVNRARINEPGRRRPWHKKFHREDAHR FT VFITELVEYISTTVQLRQADGNTLLARIAGLALTSAGLGLVVEKIVDAEGKAAPTLVQV FT VSTQGFGPQLREQLRAFFLALIEAHVIFNDVSARNIVVGRNATGQDGLFLVDGFGPKQL FT LPLYAWSKTLNRRRLLRKYEDMVRKLARLGDRLARQAGQPLPGDGARPPR" FT CDS 87695..88666 FT /transl_table=11 FT /locus_tag="BPP0089" FT /product="LysR family regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3673" FT /note="Similar to Brucella melitensis transcriptional FT regulatory protein, LysR-family bmei0116 SWALL:Q8YJG7 FT (EMBL:AE009454) (308 aa) fasta scores: E(): 7.6e-27, 29.73% FT id in 306 aa, and to Frateuria sp. ANA-18 regulator of cat2 FT gene cluster SWALL:Q9Z9Y2 (EMBL:AB009373) (295 aa) fasta FT scores: E(): 6.1e-11, 25.33% id in 296 aa" FT /db_xref="GOA:Q7W2A1" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W2A1" FT /protein_id="CAE39830.1" FT /translation="MGALKNDSSLDVRMLRIFAAVAAADSLSAAAQALNITQSAVSQTV FT TQIESILGMRVLDRTRRPYRLTPAGVALQRQSRQIVDDIDRLIAQVREADLMNRPAIRI FT GMIDSFAATTGPAIVKRLTQSASQVLVWSGLAYGHAQALLNRQVDIIVTTDALEDVDGL FT VRRPILNEPFVVVAPAVRADEFAPLDLRQMAQAAPFIRFSGRSHFGAMIERHLRRCGVT FT APPFLEIDTSDVVMAMIAANLGWALMTPLCLLQGRSWLDQVVVLPLPGPSLARTLHQVS FT RLEEYQEMADMFWQLSRQALETEIFPQVTTQLPWLGRQMRLC" FT misc_feature 87695..87787 FT /note="Signal peptide predicted for BPP0089 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.974) with cleavage site FT probability 0.638 between residues 31 and 32" FT misc_feature 87728..87907 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 3.3e-20" FT misc_feature 87770..87862 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT misc_feature 87977..88600 FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 2.3e-19" FT CDS 88692..89693 FT /transl_table=11 FT /locus_tag="BPP0090" FT /product="periplasmic solute-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3674" FT /note="Similar to Escherichia coli taurine-binding FT periplasmic protein precursor TauA or SsiA or b0365 FT SWALL:TAUA_ECOLI (SWALL:Q47537) (320 aa) fasta scores: E(): FT 4.5e-18, 31.71% id in 309 aa, and to Rhizobium meliloti FT putative taurine uptake ABC transporter periplasmic FT solute-binding protein TauA or rb0965 or smb21526 FT SWALL:Q926G5 (EMBL:AL603645) (339 aa) fasta scores: E(): FT 8e-17, 30.51% id in 331 aa" FT /db_xref="InterPro:IPR006311" FT /db_xref="UniProtKB/TrEMBL:Q7W2A0" FT /protein_id="CAE39831.1" FT /translation="MQETRRQFIKGMAISAAALALPVAGRSWAAKAEAVRYGGSAWLGH FT YPAWLAIQAGYFKAENLEVGWESFGTTSARVSALLSGNIDMAVTAAPAALAVMSRGSCH FT FAIIGVPENFGRVEGLIVRSQVARLEDLKGKKVGVTFASSAHLLVLNLLDQAGLKAGKD FT VTVLNVPAPELPAAFQSGQIDAAAAWTPQFNAIRAMPDAKVLVDDTSFSLYKEYGVTPG FT PDVLVARRAFLDKNPEAVKRFLKAYFRANEQLKTQPDATVAALTELTKLSAADQLEMVK FT GADWYTAAEQGALLAPGSKYIDGLQKLAEMMVRYDQIDKAPPVREWVDAAYL" FT misc_feature 88692..88778 FT /note="Signal peptide predicted for BPP0090 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.985 between residues 29 and 30" FT CDS 89757..90527 FT /transl_table=11 FT /locus_tag="BPP0091" FT /product="ABC transport system permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3675" FT /note="Similar to Escherichia coli taurine transport system FT permease protein TauC or SsiC or b0367 SWALL:TAUC_ECOLI FT (SWALL:Q47539) (275 aa) fasta scores: E(): 2.1e-34, 37.34% FT id in 241 aa, and to Methanopyrus kandleri homolog of FT ABC-type nitrate/sulfonate/taurine/bicarbonate transport FT systems, permease component mk0602 SWALL:AAM01817 FT (EMBL:AE010353) (251 aa) fasta scores: E(): 7.1e-38, 40.23% FT id in 251 aa" FT /db_xref="GOA:Q7W299" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7W299" FT /protein_id="CAE39832.1" FT /translation="MNAQNRQRRPDLLLISSVSVIVLLLFWEAVCRLQWVDALFLPPPS FT DVFARMGNMWEQGSLLDHIVASARRVMVGFAAATALAIPLGIFLGTSQRARAAFDPILS FT FLRPLPSMSWIPLSLLWFGITETQKYSIVFMGTFAPALLYVIEATRNIDPLLIRAARNL FT GASGPQVMRSVILPASLPQIFSGFKVILGLSWTCVISAELVAAKEGLGFLIMNGKEFFQ FT TDTVVLGMALISVTVLVTDVVFRIIENRVLAWSR" FT misc_feature join(89790..89849,89967..90026,90063..90131,90144..90212, FT 90303..90371,90429..90497) FT /note="6 probable transmembrane helices predicted for FT BPP0091 by TMHMM2.0 at aa 12-31, 71-90, 103-125, 130-152, FT 183-205 and 225-247" FT misc_feature 90198..90431 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component, score 5.2e-06" FT CDS 90515..91306 FT /transl_table=11 FT /locus_tag="BPP0092" FT /product="ABC transporter ATP-binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3676" FT /note="Similar to Rhizobium loti ATP-binding protein of ABC FT transporter mll1253 SWALL:Q98KZ4 (EMBL:AP002997) (267 aa) FT fasta scores: E(): 6.8e-43, 46.59% id in 264 aa, and to FT Agrobacterium tumefaciens ABC transporter, nucleotide FT binding/ATPase protein atu0159 or agr_c_259 SWALL:AAL41183 FT (EMBL:AE008990) (261 aa) fasta scores: E(): 1.9e-42, 49.6% FT id in 250 aa" FT /db_xref="GOA:Q7W298" FT /db_xref="HSSP:1F3O" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W298" FT /protein_id="CAE39833.1" FT /translation="MVAVNDPMISIEGISKSFGSFQALQGVDLKIPRGEFLVVLGASGC FT GKSTLLNLITGFERPTAGRIVVNGREVVDVDPHCGMVFQQYALFPWLTVAENVAFGLKM FT KGVAAATRRETAQQFIEMVGLKGFENAYPKALSGGMRQRVSIARVLANDPDVILLDEPF FT AALDAMTRQVLQEELTRIYEQSGKTIVFITHSIDEALLLSSRMVIMSARPGRVACDMPN FT DLPYPRNADVQLSPRYIELKSQIWDIVQNEVMRSLQARADQ" FT misc_feature 90614..91150 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.3e-65" FT misc_feature 90635..90658 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 90920..90964 FT /note="PS00211 ABC transporters family signature." FT CDS 91334..92650 FT /transl_table=11 FT /locus_tag="BPP0093" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3677" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4186 SWALL:Q9HWJ5 (EMBL:AE004835) (439 aa) fasta FT scores: E(): 2.6e-52, 37.03% id in 432 aa, and to Ralstonia FT solanacearum putative oxidoreductase protein rsc2113 or FT rs01491 SWALL:Q8XXK0 (EMBL:AL646068) (387 aa) fasta scores: FT E(): 1.5e-46, 37.53% id in 381 aa" FT /db_xref="GOA:Q7W297" FT /db_xref="InterPro:IPR006076" FT /db_xref="UniProtKB/TrEMBL:Q7W297" FT /protein_id="CAE39834.1" FT /translation="MSSPSGSSRTFPQYQSGSGWNAMLPKRTPRTAAPARRHFKSLVIG FT AGYTGLAAARRLAELQPQDQVLVVDATVAGEGSAGRNSGFLINLPHNTRMSGHHSPLEV FT ARKQIAMLQSGLDWLAQLSGQGGFDCGWDLAGKYHAAATADGEQSLRGALQQYGQWGVA FT FSELDRDALQAQLGTRYYRFGYHSMNNVFVQPAALIRGLADSLPENVWLMEDNPVLSID FT GSGPYKVRTRGGEFTADNVILANNAFARRLGFLRSRLVTIFTYAGVTPVLSPAQQALLG FT ERDQWGVIPANRLGTTLRRISGGRFMVRSAYSYEAEQPLERMEQLLRDSFVRRYPDLAA FT HDFEYVWSGSTGLTGNGASFVGAIQPGLYASVGCNGAGVIKGTIYGKLLGEQVAGHRSA FT MLDDLASFEKPNWLPPEPLRRIGALSTIAYQARKAGLEK" FT CDS complement(92787..92975) FT /transl_table=11 FT /locus_tag="BPP0094" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3678" FT /note="No significant database matches." FT /db_xref="UniProtKB/TrEMBL:Q7W296" FT /protein_id="CAE39835.1" FT /translation="MARRRAPVFFDQIRTIVRKEGIMKMIAIGAGVMLLAGLVRACQGW FT RRLLRQLPDRNEDMTLF" FT misc_feature complement(92853..92975) FT /note="Signal peptide predicted for BPP0094 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.795) with cleavage site FT probability 0.792 between residues 41 and 42" FT CDS complement(92984..93628) FT /transl_table=11 FT /locus_tag="BPP0095" FT /product="TetR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3679" FT /note="Similar to Ralstonia solanacearum putative FT transcription regulator protein rsc0472 or rs04423 FT SWALL:Q8Y264 (EMBL:AL646059) (213 aa) fasta scores: E(): FT 8e-34, 51% id in 200 aa, and to Agrobacterium tumefaciens FT transcriptional regulator, TetR-family atu5291 or FT agr_pat_419 SWALL:AAK90667 (EMBL:AE008951) (221 aa) fasta FT scores: E(): 6.7e-13, 33.33% id in 192 aa" FT /db_xref="GOA:Q7W295" FT /db_xref="InterPro:IPR012287" FT /db_xref="UniProtKB/TrEMBL:Q7W295" FT /protein_id="CAE39836.1" FT /translation="MPGRHFSHDRAKLAGMSIPKSELTFAAIVDAALDMAAAQGMESLT FT LGEVAKRLGISKSGVFSRVGSREALLHAVLQEYDRRFLGAVFAPAMAAPRGLPRLDAMV FT GHWIERAANVEALTGCIYVAGAFEYDDVDNPMRGRVQANVRGWRAALGRTVRQAIDEGH FT LRPDTDPEQLVFEIYSLMVGLMHDARFLRDPRAHERVRQAYARLIATYRNT" FT misc_feature complement(93407..93547) FT /note="HMMPfam hit to PF00440, Bacterial regulatory FT proteins, tetR family, score 1.8e-11" FT CDS complement(93664..95841) FT /transl_table=11 FT /gene="glcB" FT /gene_synonym="glc" FT /locus_tag="BPP0096" FT /product="malate synthase G" FT /EC_number="4.1.3.2" FT /note="ortholog of Bordetella pertussis (BX470248) BP3680" FT /note="Similar to Escherichia coli malate synthase G GlcB FT or Glc or b2976 SWALL:MASZ_ECOLI (SWALL:P37330) (722 aa) FT fasta scores: E(): 7.7e-181, 63.26% id in 716 aa, and to FT Pseudomonas aeruginosa malate synthase G GlcB or pa0482 FT SWALL:Q9I636 (EMBL:AE004485) (725 aa) fasta scores: E(): FT 5.9e-189, 67.35% id in 726 aa" FT /db_xref="GOA:Q7W294" FT /db_xref="HSSP:1P7T" FT /db_xref="InterPro:IPR006253" FT /db_xref="UniProtKB/Swiss-Prot:Q7W294" FT /protein_id="CAE39837.1" FT /translation="MTERIPHHGLQVAASLHRFIEDEALSGSGLAPDEFWAGFAALVRD FT LAPRNRELLAERDRLQGEIDAWHRAHPGPVRDSAGYQALLERIGYLQPQPAQVTASTRD FT VDSEIASQAGPQLVVPVSNARYALNAANARWGSLYDALYGTDAIPPVAGDDGKGYNPAR FT GEAVIARARAFLDEAAPLAQGSHADATAYAIEGGKLAVTLGAGQRTGLRNPAQLAGYQG FT DASQPAAVLLANNGLHFEIQIDRQHQIGATDAAGVKDVLLEAALTTIMDCEDSVAAVDA FT DDKVLIYRNWLGLMKGDLSESVTKGGKTFTRRLNADRQYHKPDGGTLTLHGRSLMFVRN FT VGHLMTNPAILDEQGNEVPEGILDAVITSLAALPDRANRLNSRTGSIYIVKPKMHGPAE FT AAFANELFDRVEDLLKLPRHTIKMGIMDEERRTSVNLKACIAAAAARVAFINTGFLDRT FT GDEMHTGMEAGPMLRKGDMKSSAWITAYERNNVLVGLDCGLRGRAQIGKGMWAMPDMMA FT AMLEQKIGHPKAGANTAWVPSPTAATLHAMHYHQVDVAAVQQALEQTRYDSVRDELLAG FT LLTVPVGDPAAWSADDIQRELDNNAQGILGYVVRWIDQGVGCSKVPDINNVGLMEDRAT FT LRISSQHIANWLRHGIVDRAQVNATFERMAKVVDQQNAGDPNYLPMAGHFDTSFAYRAA FT CALVFEGLTQPNGYTEPLLHEYRQAFKAAQR" FT misc_feature complement(93748..95793) FT /note="HMMPfam hit to PF01274, Malate synthase, score 0" FT CDS 96085..96849 FT /transl_table=11 FT /gene="glcC" FT /locus_tag="BPP0097" FT /product="GntR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3681" FT /note="Similar to Escherichia coli glc operon FT transcriptional activator GlcC or b2980 SWALL:GLCC_ECOLI FT (SWALL:P52072) (254 aa) fasta scores: E(): 2e-52, 63.82% id FT in 246 aa, and to Pseudomonas aeruginosa transcriptional FT regulator GlcC or pa5356 SWALL:Q9HTK2 (EMBL:AE004947) (251 FT aa) fasta scores: E(): 1.8e-58, 66.53% id in 248 aa" FT /db_xref="GOA:Q7W293" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W293" FT /protein_id="CAE39838.1" FT /translation="MEPGVDGARKQIAEVVAERIERLILDGVLKAGQALPSERRLTEKL FT GVSRTALREGLRVLWARQIIHTAQGKGSYVAQISQVDAGPLVHLFNSQPRTLYDLLEVR FT ALLESESARLAAIRGTDADFIMIRRRYDEMLAAHGRETDSATHAHLDHAFHLAICQASH FT NAVLVHTLQSLTDLLLGSVFACVNNLYHREPHKRHIDQQHERLFLAVLAREPEQAHQAA FT RAHVDSVRQSLAEIEQEEQRLVRATLRLEGWV" FT misc_feature 96130..96309 FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family, score 2.5e-16" FT misc_feature 96187..96261 FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature." FT CDS complement(96846..97973) FT /transl_table=11 FT /locus_tag="BPP0098" FT /product="putative dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3682" FT /note="Similar to Bacillus stearothermophilus L-lysine FT dehydrogenase LysDH SWALL:Q9AJC6 (EMBL:AB052732) (385 aa) FT fasta scores: E(): 1.2e-14, 28.92% id in 363 aa, and to FT Agrobacterium tumefaciens dehydrogenase atu0946 or FT agr_c_1727 SWALL:AAL41960 (EMBL:AE009059) (366 aa) fasta FT scores: E(): 2.5e-74, 54.31% id in 359 aa" FT /db_xref="GOA:Q7W292" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7W292" FT /protein_id="CAE39839.1" FT /translation="MVRPPYPIAILGAGKIGAAIALLLQRGGDYDILVADQDPARLQAV FT ARLGCRTAQVRDDDALQQAVSGRYAVLNALPFHRARAAAAACVRAGAHYFDLTEDVAST FT HAIRELAASAGTMLMPQCGLAPGFIGVVGSDLSRRFDRLLDLRMRVGALPRFPSNALRY FT NLTWSTEGLINEYCNACEAIVDGALVAVPPMEGYETFTLDGIEYEAFNTSGGLGTLPQT FT LLGKARNVDYKSIRYPGHCAIMKLLLNDLRLRERRDLLQEILESAIPSTDQDVIVILAS FT ASGYRQQRLVQESFSARIYGATVDGQTLSAIQLSTAADVCTMLDLAVHGHLPQRGFIGQ FT EQVPLAALLENRYGRIYAGQPLPAREAPQALLPGS" FT CDS complement(98199..98585) FT /transl_table=11 FT /locus_tag="BPP0099" FT /product="Putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3683" FT /note="No significant database matches." FT /db_xref="UniProtKB/TrEMBL:Q7W291" FT /protein_id="CAE39840.1" FT /translation="MKTLATAVMLSMTMATGAQAADLGAEPTRAQVQAELVQAKANGQY FT TFGEQDYPAAITQGSALSAAEVRDDLAQAKAAGEVTFGNLDYPPQASNVNSSMTRAQVQ FT ADLAQAKNDGVVTFGNLDYPPQHG" FT misc_feature complement(98526..98585) FT /note="Signal peptide predicted for BPP0099 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 20 and 21" FT CDS complement(98851..99777) FT /transl_table=11 FT /locus_tag="BPP0100" FT /product="UbiA prenyltransferase family protein" FT /EC_number="2.5.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3684" FT /note="Similar to Arabidopsis thaliana para-hydroxy bezoate FT polyprenyl diphosphate transferase atppt1 SWALL:Q9FRU7 FT (EMBL:AB052553) (355 aa) fasta scores: E(): 1.6e-40, 43.51% FT id in 239 aa, and to Saccharomyces cerevisiae FT para-hydroxybenzoate--polyprenyltransferase, mitochondrial FT precursor Coq2 or ynr041c or n3419 SWALL:COQ2_YEAST FT (SWALL:P32378) (372 aa) fasta scores: E(): 7.5e-38, 40.41% FT id in 287 aa" FT /db_xref="GOA:Q7W290" FT /db_xref="InterPro:IPR006370" FT /db_xref="UniProtKB/TrEMBL:Q7W290" FT /protein_id="CAE39841.1" FT /translation="MSASQQQSVDLNDIVFTDWVERWLPRPWRPYARLCRLDRPIGTWL FT TLLPCIAALVQAAGGLPDLRRLLIFSLGALLMRGIGCTVNDMWDRDIDKHVERTRFRPL FT TSGQLSMRQAVAFLIGQLLVCASLLFFINDMSRWLAVAVLPFVFIYPFCKRVTYWPQVV FT LGICFNWGMLMAWSDTQDHLPLAAIAMWLGAVLWQVGYDSIYAYVDVRDDRSLGLHSTA FT TRFGEQGKLWIGGFYAATLALWTWGGYAMGLGWGYFAGIGAVAIHLAWQLREFDLQRPE FT RNFKLFRANLWTGVLLIAAALAGTLPY" FT misc_feature complement(join(98860..98925,98962..99018,99034..99090, FT 99154..99219,99250..99300,99322..99372,99385..99450, FT 99514..99579,99592..99657)) FT /note="9 probable transmembrane helices predicted for FT BPP0100 by TMHMM2.0 at aa 40-62, 66-88, 109-131, 135-152, FT 159-176, 186-208, 229-248, 253-272 and 284-306" FT misc_feature complement(98863..99651) FT /note="HMMPfam hit to PF01040, UbiA prenyltransferase FT family, score 9e-63" FT misc_feature complement(99457..99525) FT /note="PS00943 UbiA prenyltransferase family signature." FT CDS complement(99864..101063) FT /transl_table=11 FT /locus_tag="BPP0101" FT /product="putative aminotransferase" FT /EC_number="2.6.1.44" FT /note="ortholog of Bordetella pertussis (BX470248) BP3685" FT /note="Similar to Thermococcus profundus multiple substrate FT aminotransferase SWALL:Q9V2W5 (EMBL:AB027131) (417 aa) FT fasta scores: E(): 3.1e-62, 44.05% id in 404 aa, and to FT Ralstonia solanacearum probable aminotransferase protein FT rsc0985 or rs04307 SWALL:Q8Y0Q8 (EMBL:AL646062) (406 aa) FT fasta scores: E(): 1e-88, 58.19% id in 409 aa" FT /db_xref="GOA:Q7W289" FT /db_xref="InterPro:IPR015421" FT /db_xref="UniProtKB/TrEMBL:Q7W289" FT /protein_id="CAE39842.1" FT /translation="MDKPFEPECSFSERAKQLTSSAIREILKVTERPEVISFAGGLPAP FT GGFPVEVVQAAFDKVLATNGRAALQYGPTEGYAPLRQWVADDLNAVGANVTADQILIVS FT GSQQALDLLGKVLIDKDSPILVEDPSYLGALQSFSLYQPKYVPIPTDDGGLVPEAITAE FT LAEGARFLYALPNFQNPTGRTLNLERRKALVRQAAQFGVPIIEDDPYGELRYAGEPQPG FT LLALAGECGATVIRLGTFSKVLAPGLRLGYIAAPRNIINKLVQAKQATDLHTPTLTQMA FT VYEVVKTGFLAEHLPRVREIYRVQGRCMLEAIEREFPASVSWTKPEGGMFIWVTLPEHI FT DSTKLLAQAVEQNVAFVPGGPFYAGTPRQNTLRLSFATVPEAKIREGIAILGKLLKAAI FT " FT misc_feature complement(99879..100793) FT /note="HMMPfam hit to PF00155, Aminotransferase class I and FT II, score 3e-06" FT CDS 101202..101696 FT /transl_table=11 FT /locus_tag="BPP0102" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3686" FT /note="Similar to Xylella fastidiosa hypothetical protein FT Xf1230 SWALL:Q9PDZ8 (EMBL:AE003957) (162 aa) fasta scores: FT E(): 3.6e-38, 61.03% id in 154 aa, and to Rhizobium loti FT hypothetical protein Mll2226 SWALL:Q98IV8 (EMBL:AP002999) FT (165 aa) fasta scores: E(): 1.6e-36, 59.23% id in 157 aa" FT /db_xref="HSSP:1VHM" FT /db_xref="InterPro:IPR003018" FT /db_xref="UniProtKB/TrEMBL:Q7W288" FT /protein_id="CAE39843.1" FT /translation="MFDATPISTVSKPVFYAELAAQARALLAGEHDRIANAANFSALVY FT QALPDINWAGFYFHDGQELVLGPFQGKPACVRIALSRGVCGAAASQRRTQVVPDVHAFP FT GHIACDAASRAEIVVPLLHKGSLLGVWDVDSPLPGRFDDEDRAGMEALCEVFLHSLGSA FT D" FT misc_feature 101295..101681 FT /note="HMMPfam hit to PF01590, GAF domain, score 1.2e-05" FT CDS 101984..102883 FT /transl_table=11 FT /locus_tag="BPP0103" FT /product="putative dihydrodipicolinate synthase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3687" FT /note="Similar to Yersinia enterocolitica FT dihydrodipicolinate synthetase DhdpS SWALL:Q93IH0 FT (EMBL:AJ345001) (293 aa) fasta scores: E(): 3.3e-22, 33.68% FT id in 282 aa, and to Ralstonia solanacearum probable FT dihydrodipicolinate synthase-related transmembrane protein FT rsc0665 or rs01570 SWALL:Q8Y1M5 (EMBL:AL646060) (304 aa) FT fasta scores: E(): 1.2e-51, 58.94% id in 285 aa" FT /db_xref="GOA:Q7W287" FT /db_xref="HSSP:1O5K" FT /db_xref="InterPro:IPR002220" FT /db_xref="UniProtKB/TrEMBL:Q7W287" FT /protein_id="CAE39844.1" FT /translation="MQYPAQSPFQDIWIPLVTPFADGAVDLPALRRLVRDYKAAGVDGL FT VACGSTGEAAALDEAEQLAVLDAVLEEAGALPVAMGLAGNHQGHVLRRLARLGERPLAG FT VLAPAPYYVRPSQAGAQAYFCALADASAAPLILYDIPYRTGAQLDTATLLALAEHPNIA FT AVKDCGGSVDKTLALIAHGGVAVLAGEDLQGLGTLCLGGTGMIAAAAHVRPDLFVAMHR FT AVRAQQLGQAQRLFLALAPVIRLLFAEPNPAPLKALLASQGRLRNEMRAPMLPAAEALT FT RRLQAELDVLDRAFAPGA" FT misc_feature 102005..102859 FT /note="HMMPfam hit to PF00701, Dihydrodipicolinate FT synthetase family, score 1.5e-38" FT misc_feature 102113..102166 FT /note="PS00665 Dihydrodipicolinate synthetase signature 1." FT misc_feature 102395..102487 FT /note="PS00666 Dihydrodipicolinate synthetase signature 2." FT CDS 103231..109044 FT /transl_table=11 FT /locus_tag="BPP0104" FT /product="putative adhesin" FT /note="ortholog of Bordetella pertussis (BX470248) BP3204" FT /note="Similar to Bordetella bronchiseptica putative outer FT membrane ligand binding protein BipA SWALL:Q9APE8 FT (EMBL:AF304006) (1578 aa) fasta scores: E(): 2.7e-186, FT 45.88% id in 1445 aa, and to Escherichia coli O157:H7 FT putative adhesin EaeH or z0375 or ecs0336 SWALL:Q8X6G3 FT (EMBL:AE005207) (1417 aa) fasta scores: E(): 2.7e-25, FT 23.87% id in 1420 aa" FT /db_xref="UniProtKB/TrEMBL:Q7W286" FT /protein_id="CAE39845.1" FT /translation="MDMNLIPKLTRAHLPARGRRHWYRRHRAGAAGMSAVLAMQAAAPV FT AYGQGAPTFSATQVADAASNAVAQPGAVETRVAQTIQALAQAREAGGARQDGRASLDGQ FT FLRSQAQAQANVLVQQGVQWANETGLPWLRRLEGNVSYDFSGRDVAVDVRTIDALHLDQ FT DRALLLQLGGHNQNHRPTVNAGVVARSAAGSSLILGGNAFLDYEVGKRHLRGSLGAEAV FT AAQFTLYGNVYAPLSGWKAAKRAERREERPAAGWDVGFTARPEAVQGLALNAQYFRWRG FT AQVDYFDDGRYRRNPSGFKYGIEYRPVPLIGVGVEQARLQSGERQTSVQLGVRLNLGEP FT LSRQLRRGAQDTAPPFDRGARLQDFVRRENRIVLDTRRKKIVLALRIAEVRTDPATGRI FT TVYGVTEPLADVQLWLPDGTATSVRANAAGGFEASSAGDMTSGLIRARATDRYGDTSQE FT VTYAYTDTVDKTAPVLSIAGVATDEATGRVTVTGRSEPDAQVTIRFPGGGRKTVRADAN FT GAYRVRSDGDLPAGVIVVQAADAAGNSTQAQQAYQDTVDRTAPEPVQIALDTDVATGRL FT TVSGQAEPGGSVTVTWPDGTTQTVRLDADGGFRVTSAGDAAQGDVVVVVADQAGNRAAP FT VRAHYADPVDRTAPMTPTVRHATDAQTGRVTVMGRTEAGALVTVQFPDGSSKTVRAQND FT GGYAATSDTDMVSGPIVVSAGDADGNRTPAQQVMYTDTLDKTAPASPSLTVREDAASGR FT ATVTGQAEPGAAVRVVFPNGEAQTVTAGSDGAYSVTSAADMVAGEITVVAADASGNQSA FT PARTVFADAVDRTAPAAPTLALSEAADSGRLTVSGRTEPGASVRVTFPDGETVTVTAKA FT DGTYTATSRADMIGGNVTVVATDAAGNAAAPVRAAYADTVDRTPPVLDTPVLSVASDSG FT RVTVTGVTEPGARVQVAIPGESLQTVTADSAGRYRAVSPGDVLRSGTVRVIATDAHGNA FT SAPRDVPYQDAVDRTAPPLTIEAAVEQARTGVVNVSGKTEPNLMVSATFPDGQTAQARA FT DGQGRYQLASPADVARSGRIAVSASDAAGNRAAASAEFTDQVDKTAPRAPTLQLATDTA FT TGRVTASGKAEPGAIVEITWPDQTRVTVVADTSGAYSATSAADMPDGAITAVAADRAGN FT TGAPTRQRYIDSVDRTAPTLGTPSVSTAADTGRVSVTGMTEPGARVQVEIPGEAPRIVT FT ADAAGRYSVVSAGDVLQSGTVRVTATDAHGNASAPAHLRYQDQVDKTAPASPSLTVRED FT AASGRATVTGQAEPGAAVRVVFPNGEAQTVTAGSDGAYSVTSAADMVAGEITVVAADAS FT GNQSAPARTVFADAVDRTAPAAPTLALSEAADSGRLTVSGRTEPGASVRVTFPDGETVT FT VTAKADGTYTATSRADMIGGNVTVVATDAAGNAAAPVRAAYADTVDRTPPVLDTPVLSV FT ASDSGRVTVTGVTEPGARVQVAIPGESLQTVTADSAGRYRAVSPGDVLRSGTVRVIATD FT AHGNASAPRDVPYQDAVDRTAPPLTIEAAVEQARTGVVNVSGKTEPNLMVSATFPDGQT FT AQARADGQGRYQLASPADVARSGRIAVSASDAAGNRAAASAEFTDQVDKTAPAVTIRAV FT TEQAGTGVATVSGATEPGATVSVTFPDGQVARATADRSGAYTVHSARDVTARGNISVIA FT TDAAGNASPSVSRQFSNTVADTVPPSLTIAMVTTDPGNGRITVSGVTEAGARVHVVFPG FT GASDTVTADSKGGYRATSAGDVGSGAVTAQATDASANRSPLKTYAYTDAWQPRQLSAKD FT FSQSRYFVPLTTRGGTDNEPLLRITNQQIPTAELRVALKPYKTEDRAGRLVREAITLKW FT GNAPGVGGDARALHFYVPDSAKAKLRKELTEVERSNDYKFWIEFTDTRFGGVARLYIKV FT ISTL" FT misc_feature 103231..103374 FT /note="Signal peptide predicted for BPP0104 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.992) with cleavage site FT probability 0.678 between residues 48 and 49" FT CDS 109211..109987 FT /transl_table=11 FT /locus_tag="BPP0105" FT /product="putative desaturase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3205" FT /note="Similar to Caulobacter crescentus sterol desaturase FT family protein Cc1671 SWALL:Q9A7P9 (EMBL:AE005841) (274 aa) FT fasta scores: E(): 7.2e-16, 31.67% id in 221 aa, and to FT Homo sapiens lathosterol oxidase Sc5dL SWALL:SC5D_HUMAN FT (SWALL:O75845) (299 aa) fasta scores: E(): 2.5e-08, 31.17% FT id in 170 aa" FT /db_xref="GOA:Q7W285" FT /db_xref="InterPro:IPR006694" FT /db_xref="UniProtKB/TrEMBL:Q7W285" FT /protein_id="CAE39846.1" FT /translation="MGQAFAALSVWQVMGYGLVFFGGIYLLFGAATWLLTRRVLPALGV FT GRPLDPRPLGPGQWRREFLQSGLSVLIFGLGMVFPWGLVQLGWARLDDDAGPWRIVAEI FT LVLVIWNDVHFWINHRLLHTRLLRRFHLPHHRSVVTTPFSTYSFHPIEALMLGNVILLP FT MVVHDFSFWSLLSVPLFSLFFNCVGHANYDFFPGVSYAHWFAASRRHHLHHACYQGNFG FT FQFTFMDRLFGTRLGADAAQGQLAAYRKRGAVGSAR" FT misc_feature 109235..109870 FT /note="HMMPfam hit to PF01598, Sterol desaturase, score FT 1.7e-05" FT misc_feature join(109247..109315,109409..109477,109505..109564) FT /note="3 probable transmembrane helices predicted for FT BPP0105 by TMHMM2.0 at aa 13-35, 67-89 and 99-118" FT CDS 109971..110849 FT /transl_table=11 FT /locus_tag="BPP0106" FT /product="putative fatty acid desaturase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3207" FT /note="Similar to Synechococcus vulcanus delta 9 acyl-lipid FT fatty acid desaturase DesC SWALL:Q9ZAP7 (EMBL:U90417) (279 FT aa) fasta scores: E(): 0.001, 24.7% id in 255 aa, and to FT Rhodococcus sp. Q15 alkane-1-monooxygenase AlkB3 FT SWALL:Q93DN5 (EMBL:AF388179) (383 aa) fasta scores: E(): FT 3.1e-05, 27.9% id in 258 aa" FT /db_xref="GOA:Q7W284" FT /db_xref="InterPro:IPR005804" FT /db_xref="UniProtKB/TrEMBL:Q7W284" FT /protein_id="CAE39847.1" FT /translation="MVRPAEWLRHRRDWQSILYLAALPALAAWQWVHGWHWALYAPMLF FT LTLGVGVIHHNHAHRRMWRPRWLNRLTDFWLTLLQGHPTFVFHAAHNANHHRYKHGPRD FT VARTYRFGGDTNHLAGYLLHPLQAVVVLYPLFLASLRRLRSRRPGVWRYCLRQYAAWLG FT LWGGLLALDPGKAFWLVIVPQLHGLHWLLATNYLQHAHADGGPGRHAALSYARNFEGWV FT NPLLFNIGLHTAHHENPRAHWSELRALHWQHYRDRVPSHLNERGLARYMARVFVLGLFS FT RRCRTHTLMRP" FT misc_feature 109971..110051 FT /note="Signal peptide predicted for BPP0106 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.628) with cleavage site FT probability 0.624 between residues 27 and 28" FT misc_feature join(110016..110069,110079..110132,110169..110237, FT 110322..110390,110448..110516) FT /note="5 probable transmembrane helices predicted for FT BPP0106 by TMHMM2.0 at aa 16-33, 37-54, 67-89, 118-140 and FT 160-182" FT misc_feature 110088..110741 FT /note="HMMPfam hit to PF00487, Fatty acid desaturase, score FT 6e-05" FT CDS 110885..112798 FT /transl_table=11 FT /locus_tag="BPP0107" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3208" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc0865 SWALL:Q9A9U6 (EMBL:AE005763) (399 aa) fasta FT scores: E(): 8.3e-42, 38.24% id in 387 aa, and to Vibrio FT cholerae hypothetical protein Vca1109 SWALL:Q9KKJ6 FT (EMBL:AE004435) (236 aa) fasta scores: E(): 4.4e-05, 23.94% FT id in 213 aa" FT /db_xref="GOA:Q7W283" FT /db_xref="InterPro:IPR013747" FT /db_xref="UniProtKB/TrEMBL:Q7W283" FT /protein_id="CAE39848.1" FT /translation="MPVAFDRVYLHSAGYFLPGEPVDNDAMDQYIAPLNRISGRIKNRI FT LAENGIRQRYYAIDPEGRTRWSNAQLAAQAIQACLARGDADLSQVSLLASGSSGGDTLM FT PGFANMIQGELSAAPLETLSVHGICAAGVGAIQAAAQGIELGAHRRALAVASELPSRLF FT KRSRFAAPGYDADFDAHFLRWMLSDGAGAMLLGDASQPLAGAANGVRLRLKWIHQRSFS FT GDYPVCMQLGQSAGGQAHLDYGSWSEAEAAGALLLRQDIRLLPHLFDIGIHEYAKLVHD FT GWVDPRQVSHFLCHYSSEKFIPVVEGLMDKAGLAIARERWFSNLAWRGNTGAASILIML FT AEFLQTRTVQPGEQIFCYIPESGRFMAAYMLLQAEGPDETAQPARARAVPAAAPAGEAD FT FIAPPHDPAHAPQGLEPLLGELAAIWHDYRSRVWRTPVIRHLRQGRFAASDYLNWMENW FT VPQVREGSKWMREAAASLSETYQPLAALIGTHAGEEQDDFKILFQDYRNAGGAVEDIDA FT LRRNSGGEALNAYLHALAATRDPIGLLGAIYVIEGTGQRIVPALLPLLKAALALPPDAF FT RFLEYHGHNDENHLARWLLAVELALDCDDSGRARQQIVDTARRTAALYLMQFQHVMEER FT TA" FT CDS 112795..113676 FT /transl_table=11 FT /locus_tag="BPP0108" FT /product="conserved hypothetical protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc0863 SWALL:Q9A9U8 (EMBL:AE005763) (304 aa) fasta FT scores: E(): 4.6e-54, 49.14% id in 291 aa" FT /db_xref="UniProtKB/TrEMBL:Q7W282" FT /protein_id="CAE39849.1" FT /translation="MSRPEPDCLSQPHDPADPDPWRALYLDRSTLLPDPVKQAWLADSS FT SASRQYLLPFLRPLARAFIILIQVVKTFLPRRWSHSRLLHRILAWGLEHFVSPQANWLI FT LRHFHLGAQILAFIARNAPVQVETTPLEPARIADLRDELFVKHDLNLFNFVIRLNQALR FT DAGQTMHAPEQVDYSMIRDPGLRLEDMPQRRRNFLDLQSAIELFTPLYQLMLTDNDFWR FT AANSLQLDETIGIYAAQLLGAPQHLILVNNKHPLVPMSTLRAGYRLVLHGLSTEMLHSL FT LMQMKQQQAEQA" FT CDS complement(113683..115020) FT /transl_table=11 FT /locus_tag="BPP0109" FT /product="probable amino acid permease" FT /note="Similar to Anabaena sp amino acid transporter FT Alr1519 SWALL:Q8YWT1 (EMBL:AP003586) (455 aa) fasta scores: FT E(): 7.9e-66, 46.68% id in 422 aa" FT /db_xref="GOA:Q7W281" FT /db_xref="InterPro:IPR004841" FT /db_xref="UniProtKB/TrEMBL:Q7W281" FT /protein_id="CAE39850.1" FT /translation="MTRAAESGMAQARGLSVLDAVAVLVGVVIGIGIFGFPPLVAQHAQ FT SESVYLALWLGGAAVMLMGALCYAELGSAYPGAGGEYLYLRHAWGPRVALLFAWARCTV FT IQTGAIAVVAFIYGEYAQELAPLGTHGVALHAAIAVIALTLLNIMGTQPSKRIQLVFTV FT LTLAALAAVVATGLSAPPAPPAPVEPLAGSTLGLLGMGLVFVLLTYGGWNEAAYLSGEL FT REARRNMAKVLLIGTAVVAGAYLLTNLALLQIFGLQGLRETRAVAATLMALAAGPYAAI FT VLSLLVCVTALSTINGTILTGARVYSALGQDVPRLRPLAGWSMRGQTPTSALLAQGAIT FT LVLLGYGAYAHDGVQTLVAYTAPVFWLFMLLVAASVWRLRRLDPHRPRPFRVPLYPLPP FT LLLGLTCAGLVWSSARYAGVGALLGLAVLAAGLPALRLLRAAPRSA" FT misc_feature complement(join(113707..113772,113785..113850, FT 113890..113955,113971..114027,114160..114225, FT 114256..114321,114385..114450,114481..114546, FT 114568..114624,114670..114735,114799..114864, FT 114895..114960)) FT /note="12 probable transmembrane helices predicted for FT BPP0109 by TMHMM2.0 at aa 20-42, 52-74, 95-117, 132-151, FT 158-180, 190-212, 233-255, 265-287, 331-350, 355-377, FT 390-412 and 416-438" FT misc_feature complement(113713..114903) FT /note="HMMPfam hit to PF00324, Amino acid permease, score FT 0.026" FT CDS complement(115017..115862) FT /transl_table=11 FT /locus_tag="BPP0110" FT /product="Putative methyltransferase" FT /note="Similar to Anabaena sp HYPOTHETICAL PROTEIN ALR1520 FT (219 aa) E(): 1.5e-30, 57.831% identity (58.182% ungapped) FT in 166 aa overlap, and to Sulfolobus solfataricus and to FT Sulfolobus solfataricus RIBOSOMAL PROTEIN L11 FT METHYLTRANSFERASE, (161 aa) E(): 9.5e-21, 48.052% identity FT (49.333% ungapped) in 154 aa overlap. Orf not present in B. FT pertussis" FT /db_xref="GOA:Q7W280" FT /db_xref="InterPro:IPR013216" FT /db_xref="UniProtKB/TrEMBL:Q7W280" FT /protein_id="CAE39851.1" FT /translation="MRTLVAPTHAPKRRMLLALLATPALALAQPAWTQQPPPVKLDVPY FT VPTPDDAVARMLEMADVTAQDTVIDLGSGDGRIAIAAVRDRGARSAMGVDIDPERIAEA FT RANARKAGLADRVTFVQQDLFDTDISKATVLTMYLLPDVNLKLRPRILNSLAPGTRVVS FT HAFTMGEWDSDRYELVDGRSLYLWVVPAHAAGDWQVEDPAGPFTLSVRQDFQKVTASAQ FT RQGERLGVAEAALRGTDLRFTVDAGSGPRTYVGRIQGDRMTAVQAPGNESGWRATRRAP FT " FT misc_feature complement(115764..115862) FT /note="Signal peptide predicted for BPP0110 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.865 between residues 33 and 34" FT CDS 116191..117819 FT /transl_table=11 FT /locus_tag="BPP0111" FT /product="putative dehydrogenase" FT /note="ortholog of Bordetella pertussis (BX470248) FT BP3209+BP0705" FT /note="Similar to Ralstonia solanacearum putative choline FT dehydrogenase lipoprotein oxidoreductase beta or rsc3345 or FT rs02583 SWALL:Q8XU48 (EMBL:AL646074) (544 aa) fasta scores: FT E(): 4.3e-146, 69.96% id in 536 aa, and to Pseudomonas FT aeruginosa probable gmc-type oxidoreductase pa3710 FT SWALL:Q9HXT1 (EMBL:AE004790) (557 aa) fasta scores: E(): FT 2.1e-145, 69.36% id in 532 aa" FT /db_xref="GOA:Q7W279" FT /db_xref="HSSP:1CF3" FT /db_xref="InterPro:IPR012132" FT /db_xref="UniProtKB/TrEMBL:Q7W279" FT /protein_id="CAE39852.1" FT /translation="MCATAVDTGMEFDYIIVGAGSAGCVLAKRLSADPSVRVLLLEAGG FT ADSWHWIHIPVGYLYCIGNPRTDWCYRTQADPGLNGHSLGYPRGRVLGGSSSINGMIYM FT RGQRADYDGWAAQGNPGWGWDDVLPLFKASEDHHGGASAFHGAGGEWRVERQRLSWKLL FT DAFRAAAAQAGIASIDDFNQGDNEGCDYFEVNQRSGVRWNTAKGFLRPAMDRGNLKVLT FT GARVARVVFQNRRAVGVRFLAEGGGEQYAQARGEVVLAAGAIGSAQLLQVSGVGPAALL FT QARGVPVLHDLPGVGANLQDHLQLRLIYRVQGARTLNGVAGTLWGKAWMGLQYAVQRRG FT PLSMAPSQLGAFARSGPEQSRANLEYHVQPLSLEKFGDPLHDFPAFTASVCNLRPTSRG FT HVRIVSPDPGEHPEILCNYLSTEADRKVAADSIRLTRRIVAQPALARYQPQEYKPGAQW FT QSEEDLQRLAGEIGTTIFHPVGTCRMGDDAQAVVDAALRVHGLQGLRVIDASIMPTITS FT GNTNSPTIMIAEKGAQLLREARRQT" FT misc_feature 116224..117783 FT /note="HMMPfam hit to PF00732, GMC oxidoreductase, score FT 9.9e-182" FT misc_feature 116455..116526 FT /note="PS00623 GMC oxidoreductases signature 1." FT CDS 117946..119232 FT /transl_table=11 FT /locus_tag="BPP0112" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0706" FT /note="Similar to Roseateles depolymerans orf428 protein FT SWALL:Q9F206 (EMBL:AB028938) (428 aa) fasta scores: E(): FT 1.2e-91, 58.31% id in 427 aa, and to Xylella fastidiosa FT hypothetical protein Xf0042 SWALL:Q9PHA2 (EMBL:AE003858) FT (420 aa) fasta scores: E(): 3.7e-45, 53.68% id in 421 aa" FT /db_xref="InterPro:IPR009978" FT /db_xref="UniProtKB/TrEMBL:Q7W278" FT /protein_id="CAE39853.1" FT /translation="MPHAIEIVATLLFSVAVLHTFSVPFFARLAHRNGPHAGVWHLLSE FT VEAVFGVWAFVLIACMALMAGTDRAVQYMDTRNFTEPLFVFAIMVVASSRPILELVGSL FT VRLLAAMVPVRRELATFFIVMSIVPLGGSFITEPAAMTLAAILLRDGYFRCSGRAGFKY FT MTLGVLFVNVSIGGVLTSYAAPPVLMVAATFGWDTAYMATHFGWRAAVAVCLNAAVLTM FT LCRQALLEGAVGTGAGVNASDDAAEKRPPVPAPVTLMHLAFLVGIVLTAHHPAVFLGML FT MMFIGFAHAYQRHQSRLMIREGLMVGFFLAGLVVLGGLQKWWLQDLLGGLEPTVLFWGA FT TALTAITDNAALTYLGSLVEGTSEAWRYMLVAGAVTGGGLTVIANAPNPAGFAILGKYF FT PDGSISSGRLFIAALVPTLVAAAMFMLPV" FT misc_feature join(117964..118032,118090..118158,118192..118260, FT 118318..118386,118447..118515,118732..118800, FT 118837..118905,118948..119016,119053..119121, FT 119164..119223) FT /note="10 probable transmembrane helices predicted for FT BPP0112 by TMHMM2.0 at aa 7-29, 49-71, 83-105, 125-147, FT 168-190, 263-285, 298-320, 335-357, 370-392 and 407-426" FT CDS 119426..119710 FT /transl_table=11 FT /locus_tag="BPP0113" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0707" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein rsc0464 or rs04433 SWALL:Q8Y272 (EMBL:AL646059) FT (112 aa) fasta scores: E(): 2.7e-13, 54.9% id in 102 aa" FT /db_xref="InterPro:IPR013429" FT /db_xref="UniProtKB/TrEMBL:Q7W277" FT /protein_id="CAE39854.1" FT /translation="MKCSACGHAEDVLQKISDAPLADCPACGQSTYSKQVTAAGFQLKG FT SGWYVTDFRNNNGAGKPAAGQSAAPAASGGDAGSAPATPAPAAPAATST" FT CDS 119711..120376 FT /transl_table=11 FT /locus_tag="BPP0114" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0708" FT /note="Similar to Ralstonia solanacearum probable FT transmembrane protein rsc0465 or rs04432 SWALL:Q8Y271 FT (EMBL:AL646059) (243 aa) fasta scores: E(): 4.6e-41, 55.3% FT id in 217 aa, and to Neisseria meningitidis putative FT integral membrane protein nma2020 SWALL:Q9JT22 FT (EMBL:AL162757) (245 aa) fasta scores: E(): 6.3e-34, 47.14% FT id in 210 aa" FT /db_xref="InterPro:IPR007462" FT /db_xref="UniProtKB/TrEMBL:Q7W276" FT /protein_id="CAE39855.1" FT /translation="MRHSVMRVFKKYFITGLLIWVPLAITVWVLGLLVATLEGFVPGFL FT SSQSLFGVDIPGFRFVLVITVVLLTGVFAANLLGRSLLEHWERILGRIPLVRSIYNSVK FT QVSDTVLAPNGRAFRQAVLIQYPRAGSWTIAFLTGTPSGEVASYLPGEHLSVYVPTTPN FT PTSGFFLMMPRDQVIDLQMSVDAALKYIVSMGVVAPADRRPVSPPTTPGAPLAPGAEP" FT misc_feature 119711..119866 FT /note="Signal peptide predicted for BPP0114 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.823) with cleavage site FT probability 0.419 between residues 52 and 53" FT misc_feature join(119747..119815,119873..119941) FT /note="2 probable transmembrane helices predicted for FT BPP0114 by TMHMM2.0 at aa 13-35 and 55-77" FT CDS 120417..122207 FT /transl_table=11 FT /gene="aspS" FT /gene_synonym="tls" FT /locus_tag="BPP0115" FT /product="aspartyl-tRNA synthetase" FT /EC_number="6.1.1.12" FT /note="ortholog of Bordetella pertussis (BX470248) BP0709" FT /note="Similar to Escherichia coli aspartyl-tRNA synthetase FT AspS or Tls or b1866 SWALL:SYD_ECOLI (SWALL:P21889) (590 FT aa) fasta scores: E(): 4.9e-138, 58.17% id in 593 aa, and FT to Ralstonia solanacearum probable aspartyl-tRNA synthetase FT protein AspS or rsc0466 or rs04431 SWALL:Q8Y270 FT (EMBL:AL646059) (605 aa) fasta scores: E(): 9.3e-195, FT 78.18% id in 596 aa" FT /db_xref="GOA:Q7W275" FT /db_xref="InterPro:IPR004365" FT /db_xref="UniProtKB/Swiss-Prot:Q7W275" FT /protein_id="CAE39856.1" FT /translation="MRTCYTGQVCRDHLGQTVTLYGWVNRRRDHGGVIFIDLRDRTGLA FT QIVFDPDNAEAFGTAERLRNEFCISITGLVRLRPEGTANAELASGEVEVLCQQVEILNA FT SVTPPFQLDDDNLSETTRLTHRVLDLRRPQMQHNLMLRYRVSIEVRKYLDQLGFIDIET FT PMLTKSTPEGARDYLVPSRVNAGYFFALPQSPQLFKQMLMVSGFDRYYQITKCFRDEDL FT RADRQPEFTQIDCETSFLNEVEIREIFEGMIRHVFKVVQDVDLPTPFPIMSWTEAMQRY FT GSDKPDLRVNLEFTDMTDVMRDVDFKVFASAATTAGSRVVALRVQGGGEMSRSEIDAYT FT QFVGIYGAKGLAYIKVNDVAKGREGLQSPIVKNLHDAALAELVKRTGAQNGDIIFFGAD FT RAKVVNDAIGALRVKIGHSEFGKKAGLFSGGWKPLWVVDFPMFEYDEEENRYTAAHHPF FT TSPKDGHEDFLESDPGKAVAKAYDMVLNGWEIGGGSVRIHREEVQSKVFRALKIDAEEA FT REKFGFLLDALQYGAPPHGGIAFGLDRIITMMAGAESIRDVIAFPKTQRAQCLLTGAPS FT EVDEKQLRELHIRLRNVEVK" FT misc_feature 120468..120722 FT /note="HMMPfam hit to PF01336, OB-fold nucleic acid binding FT domain, score 2.1e-13" FT misc_feature 120768..122114 FT /note="HMMPfam hit to PF00152, tRNA synthetases class II FT (D, K and N), score 1.2e-13" FT misc_feature 121065..121118 FT /note="PS00179 Aminoacyl-transfer RNA synthetases class-II FT signature 1." FT misc_feature 121317..121640 FT /note="HMMPfam hit to PF02938, GAD domain, score 1.1e-39" FT misc_feature 122031..122060 FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2." FT CDS 122320..123180 FT /transl_table=11 FT /locus_tag="BPP0116" FT /product="putative endonuclease/exonuclease/phosphatase FT family protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0710" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein rsc0469 or rs04427 SWALL:Q8Y267 (EMBL:AL646059) FT (248 aa) fasta scores: E(): 8.1e-31, 44.98% id in 289 aa, FT and to Escherichia coli, and Escherichia coli O157:H7 FT hypothetical protein YbhP or b0790 or z1009 or ecs0868 FT SWALL:YBHP_ECOLI (SWALL:P75772) (253 aa) fasta scores: E(): FT 1.3e-20, 36.77% id in 291 aa" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein rsc0469 or rs04427 SWALL:Q8Y267 (EMBL:AL646059) FT (248 aa) fasta scores: E(): 8.1e-31, 44.98% id in 289 aa" FT /db_xref="GOA:Q7W274" FT /db_xref="InterPro:IPR005135" FT /db_xref="UniProtKB/TrEMBL:Q7W274" FT /protein_id="CAE39857.1" FT /translation="MSLIRVVSYNIHKGRSALGRRESLNDLRLGLYGLRPDLVFLQEVQ FT GRNEVSSVLHAQHESLAAALRLQAAYGRNAIRTGTDHGNALLSRFDILDHENQDISDHR FT LEQRGLLHARIDVGGTEVHCFVVHLGLFAGSRGRQIQALTDRIRQSVPDGAPLLIAGDF FT NDWGDRLAPMFVQQLGLYEVFSHAPRSHGGDLPRLRDSVRRLGNVLRGVPNSVAVLERN FT NQLGMGGAYCPLPPPRTFPAVFPWFRLDRIYQRGFAVRSARVLRGREWARLSDHSPLLA FT ELELP" FT misc_feature 122329..123168 FT /note="HMMPfam hit to PF03372, FT Endonuclease/Exonuclease/phosphatase family, score 2.8e-23" FT CDS 123126..124388 FT /transl_table=11 FT /locus_tag="BPP0117" FT /product="putative phospholipase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0711" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein rsc0470 or rs04425 SWALL:Q8Y266 (EMBL:AL646059) FT (422 aa) fasta scores: E(): 7.1e-33, 46.47% id in 426 aa, FT and to Salmonella typhi putative phospholipase YbhO or FT sty0847 SWALL:Q8Z883 (EMBL:AL627268) (413 aa) fasta scores: FT E(): 1.1e-22, 38.26% id in 392 aa" FT /db_xref="GOA:Q7W273" FT /db_xref="InterPro:IPR001736" FT /db_xref="UniProtKB/TrEMBL:Q7W273" FT /protein_id="CAE39858.1" FT /translation="MGAPVGSFAAAGRARIAVKGQIVRLHWTDGNAIRLLQNGGDFFPA FT LCEAIDAARLSVHLETYIFLLDRTGRQVLECLESAARRGVKVRVVLDGFGSAGTAEAIR FT LRITQAGGQCRIFRPEPRWLGHLAFSRSRLRRLHRKVAVVDAELAFVGGINIVDDYDDL FT DPGDDIPAPRFDFAVAVQGPLVPHILYAQDLLWVRLNWARLHRHPGDWHRMRLFKPVHA FT DASPAGKLRAALLLRDNLRFRQTFEQAYLYGIQHARRDILIANAYFFPGHQFRKSLMQA FT AARGVRVRLLLQGKPEYRMQYFATRALYDRLLRGGIEIYEYMPGYLHAKVAVIDNMATV FT GSSNLDPFSLLLAREANVVVDDQPFAWDLQERLERAIALGGQFIRPLDYQRRGWLRRCI FT DVAAYTMLRIGVALTGRAGRY" FT misc_feature 123522..123605 FT /note="HMMPfam hit to PF00614, Phospholipase D. Active site FT motif, score 2.1e-05" FT misc_feature 124092..124172 FT /note="HMMPfam hit to PF00614, Phospholipase D. Active site FT motif, score 0.028" FT CDS complement(124389..125273) FT /transl_table=11 FT /locus_tag="BPP0118" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0712" FT /note="Similar to Ralstonia solanacearum probable FT transmembrane protein rsc2507 or rs01075 SWALL:Q8XWG7 FT (EMBL:AL646070) (310 aa) fasta scores: E(): 1.3e-53, 53.89% FT id in 295 aa, and to Vibrio cholerae hypothetical protein FT Vca0090 SWALL:Q9KN75 (EMBL:AE004352) (297 aa) fasta scores: FT E(): 4.2e-45, 47.88% id in 284 aa" FT /db_xref="GOA:Q7W272" FT /db_xref="InterPro:IPR000620" FT /db_xref="UniProtKB/TrEMBL:Q7W272" FT /protein_id="CAE39859.1" FT /translation="MPRRDLVDLLALAAVWGGSFLFMRVAVPEFGPAALMELRVGLAAL FT FLLPLVLWRGKPALIARHWKAILVVGTLNSALPFLLYAYAAQSLGAGFLSVANAVTPVW FT GAVIGWLWLGDRLPRMRALGLLISMSGIVVLVWDKLDFHDGGTGPAVLAAISAPVFYGM FT AANWTKRYLGHVDALTNATGSMVAASLVLAPLAIIHWPEQAVSFEAWRATVLLAIVCTG FT AAYIVFFRLIARVGPTAAVSVTFLVPVFGVLWGVWFLDEAVTPRILAGAGVILAGTALA FT LGLVGARRAAAAN" FT misc_feature complement(join(124419..124484,124500..124556, FT 124578..124643,124674..124739,124779..124832, FT 124863..124913,124935..125000,125016..125081, FT 125118..125183,125196..125252)) FT /note="10 probable transmembrane helices predicted for FT BPP0118 by TMHMM2.0 at aa 7-26, 30-52, 64-86, 91-113, FT 120-137, 147-165, 178-200, 210-232, 239-258 and 263-285" FT misc_feature complement(124425..124799) FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6, score 8.7e-22" FT misc_feature complement(124863..125234) FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6, score 1.5e-21" FT CDS complement(join(125289..126116,126116..126661)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0119" FT /product="putative membrane protein (Pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0713" FT /note="Similar to Ralstonia solanacearum probable transport FT transmembrane protein rsp0663 or rs01786 SWALL:Q8XS18 FT (EMBL:AL646080) (537 aa) fasta scores: E(): 1.1e-28, 43.18% FT id in 440 aa, and to Burkholderia cepacia major facilitator FT superfamily transporter homolog SWALL:Q9RPH2 FT (EMBL:AF158699) (531 aa) fasta scores: E(): 1.8e-26, 40.74% FT id in 427 aa" FT /db_xref="PSEUDO:CAE39860.1" FT misc_feature complement(join(125322..126116,126116..126568)) FT /note="HMMPfam hit to PF00083, Sugar (and other) FT transporter, score 0.0019" FT misc_feature complement(join(125333..125389,125420..125485, FT 125522..125587,125600..125665,125693..125758, FT 125804..125860,125924..125986,125999..126064, FT 126140..126205,126251..126307,126329..126385, FT 126416..126481,126521..126586)) FT /note="13 probable transmembrane helices predicted for FT BPP0119 by TMHMM2.0 at aa 25-47, 60-82, 92-111, 118-137, FT 152-174, 199-221, 225-246, 267-286, 301-323, 332-354, FT 358-380, 392-414 and 424-443" FT variation complement(126116..126118) FT /note="44 bp deletion near this codon in parapertussis; 44 FT bp insertion in pertussis and bronchiseptica" FT CDS complement(126712..127281) FT /transl_table=11 FT /locus_tag="BPP0120" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0715" FT /note="Similar to Ralstonia solanacearum probable FT transmembrane protein rsc1464 or rs03843 SWALL:Q8XZD7 FT (EMBL:AL646064) (213 aa) fasta scores: E(): 5e-15, 39.62% FT id in 159 aa, and to Rhizobium loti hypothetical protein FT Mll5403 SWALL:Q98BW2 (EMBL:AP003006) (149 aa) fasta scores: FT E(): 3.9e-13, 36.55% id in 145 aa" FT /db_xref="InterPro:IPR010419" FT /db_xref="UniProtKB/TrEMBL:Q7W271" FT /protein_id="CAE39861.1" FT /translation="MRIADAQWIPSTPHQTWDALQDPDVLQKCLPGCIKVERRTPTEYE FT LVVRAKVAGLETDYQGEILLCDLDPPHSCTVAFEGKGLASGLAIGTAQVNLSPKDDGTR FT LSYTVAAMAGGKLAELGESTIMKAGNKIVEKFFAAFIDHMAGQPRLAPPPPPPEPEPRG FT LTNSRWSWAVALCVVLVILGYHTFFK" FT misc_feature complement(126718..126774) FT /note="2 probable transmembrane helices predicted for FT BPP0120 by TMHMM2.0 at aa 4-26 and 218-237" FT CDS 127555..128532 FT /transl_table=11 FT /locus_tag="BPP0121" FT /product="NAD dependent epimerase/dehydratase family FT protein" FT /note="Similar to Salmonella typhi Vi polysaccharide FT biosynthesis protein Vipb or TviC or STY4660 FT SWALL:VIPB_SALTI (SWALL:Q04973) (348 aa) fasta scores: E(): FT 1.1e-22, 31.59% id in 326 aa, and to Methanopyrus kandleri FT AV19 nucleoside-diphosphate-sugar epimerase MK0724 FT SWALL:AAM01938 (EMBL:AE010366) (309 aa) fasta scores: E(): FT 3.3e-31, 37.17% id in 312 aa" FT /db_xref="GOA:Q7W270" FT /db_xref="HSSP:1GY8" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7W270" FT /protein_id="CAE39862.1" FT /translation="MKLEGAKILVIGGAGFIGSFVVAELLKHPVAEVVIYDNFARGKQS FT NIDEYLSDPRCRIYPNGGDIRDIDLLNDAMQGMDGVVHLAAMWLLHCKDFPRTAFHVNI FT EGTFNVLEACVRNNVKRLVYSSSASVYGDAVEVPMTEEHPFNNRNFYGASKIAGEAMCH FT AFHDRYGLSYVGLRYMNVYGPHQDQTAAYTGVIPIMLNKIDANEAPVINGDGTQAYDFV FT YVEDVARCNVLALTSEATDQFYNVGTGVQTSIKELCDTILDMKDSGLQVQYRPYSEDDA FT RRMVQNRIGCPVKASRDLGFTYQYALTEGLQKLIDWRAKNGAQS" FT misc_feature 127555..127623 FT /note="Signal peptide predicted for BPP0121 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.606) with cleavage site FT probability 0.564 between residues 23 and 24" FT misc_feature 127555..128521 FT /note="O-antigen biosynthesis cluster" FT misc_feature 127555..158521 FT /note="O-antigen biosynthetic locus" FT misc_feature 127576..128520 FT /note="HMMPfam hit to PF01370, NAD dependent FT epimerase/dehydratase family, score 3.5e-59" FT misc_feature 127966..128052 FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT CDS 128529..129689 FT /transl_table=11 FT /locus_tag="BPP0122" FT /product="DegT/DnrJ/EryC1/StrS aminotransferase family FT protein" FT /note="Similar to Bacillus subtilis spore coat FT polysaccharide biosynthesis protein SpsC SWALL:SPSC_BACSU FT (SWALL:P39623) (389 aa) fasta scores: E(): 7.6e-50, 41.12% FT id in 372 aa, and to Salmonella typhi putative FT lipopolysaccharide biosynthesis protein STY2527 FT SWALL:Q8Z542 (EMBL:AL627274) (385 aa) fasta scores: E(): FT 2.8e-46, 38.38% id in 383 aa" FT /db_xref="GOA:Q7W269" FT /db_xref="HSSP:1B9H" FT /db_xref="InterPro:IPR006025" FT /db_xref="UniProtKB/TrEMBL:Q7W269" FT /protein_id="CAE39863.1" FT /translation="MSGAAAKRSIAISLPMTGEEEWQAVREPLMSGWLTQGPKVAAFEK FT AFAQRHEVAHALAVTSCTTGLHLALAGLGIGPGDEVIVPSFTWVATANAILYCGGTPVL FT VDVDRETFNIDIAQVAGKVTPRTRAVIAVHLFGLCADIDALRAALPASVAIVEDAACAA FT GASWNGRPAGSLGEVGVFSFHPRKSVTTGEGGMVTTNDPELAERMNQMRNHGASISEEQ FT RHHGPRPWILADFDLLGYNYRMTDLQGAVGQVQLAKLDGFIDERARWAQFYREQLGDLK FT WLRLPAEPAGARHGWQSFVTWVDPAHAPMPRNDMMQRLQEQGIATRPGTHAVHMLGYYR FT EQYGYRPEDFPAARDCNDCTMAIPLHNRMTEDDYRYVVAAIRAFGG" FT misc_feature 128571..129674 FT /note="HMMPfam hit to PF01041, DegT/DnrJ/EryC1/StrS FT aminotransferase family, score 1.1e-145" FT misc_feature 128670..128699 FT /note="PS00142 Neutral zinc metallopeptidases, zinc-binding FT region signature." FT CDS 129810..131684 FT /transl_table=11 FT /locus_tag="BPP0123" FT /product="putative asparagine synthetase" FT /note="Similar to Bacillus subtilis asparagine synthetase FT [glutamine-hydrolyzing] 3 AsnO SWALL:ASNO_BACSU FT (SWALL:O05272) (614 aa) fasta scores: E(): 4.1e-43, 30.24% FT id in 625 aa, and to Desulfovibrio gigas putative FT asparagine synthetase Asn SWALL:Q9KJI6 (EMBL:AF168003) (643 FT aa) fasta scores: E(): 9.7e-57, 33.28% id in 664 aa" FT /db_xref="GOA:Q7W268" FT /db_xref="HSSP:1CT9" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/TrEMBL:Q7W268" FT /protein_id="CAE39864.1" FT /translation="MCGVAGLIHLDGAAVDPAVLQGMTDAIAHRGPDGEGHWIDGNVGL FT GHRRLAIIDLSPAGHQPMISADSRYVLSYNGEIYNFRELRAELETAGYRFKSRTDSEVL FT LYAVIAWGLKALKRFNGMFAFALWDCHERRLILARDRYGIKPLYYAEQGGTLAFGSEQK FT AILALPGFRRKLDKAALLEYFTFQNIFTSKVLLEDIQILPAGHYAIVEPDRCASISLTQ FT YWDFCFREPDVAATDQEYREELDRLFVQAVKRQLVTDVELGSYLSGGMDSGSIAAVAAA FT EHPYIKTFTCGFDLNSASGIELGFDERSKAEYMSYCFKTEHYEMVLKAGDMERILPHVA FT CHLEEPRVGQSYPNFFAAKLASRFVKVVLSGAGGDELFAGYPWRYYRAVVNDDFEHYVD FT KYYNFWQRLLPNSELKRVFAPIAGEVEHVWTRDIFRNVFRHHADQLYRPEDYINHSLYF FT EAKTFLHGLLVVEDKLSMAHGLETRVPFLDNDLVEFAMRCPIRLKLNNLAEVVKINENE FT TGNKVRKFFEKNRDGKTILREVMNHRLPADISKAEKQGFSAPDASWFKGESLEFVRRKL FT LDGHSPLYEIMDAATVRELVNEHLGGIRNRRLLIWSLLSVDAWMRQTF" FT misc_feature 129813..130259 FT /note="HMMPfam hit to PF00310, Glutamine amidotransferases FT class-II, score 5e-25" FT misc_feature 130479..131432 FT /note="HMMPfam hit to PF00733, Asparagine synthase, score FT 1.1e-14" FT CDS 131817..132755 FT /transl_table=11 FT /gene="wbmU" FT /locus_tag="BPP0124" FT /product="putative formyl transferase" FT /note="Similar to Escherichia coli methionyl-tRNA FT formyltransferase Fmt SWALL:FMT_ECOLI (SWALL:P23882) (314 FT aa) fasta scores: E(): 5.5e-15, 26.68% id in 311 aa. FT Identical to Bordetella bronchiseptica putative formyl FT transferase Bblps1.01 SWALL:O87974 (EMBL:AJ007747) (274 aa) FT fasta scores: E(): 6.5e-107, 100% id in 274 aa. CDS is FT extended at the N-terminus in comparison to the B. FT bronchiseptica protein" FT /db_xref="GOA:Q7W267" FT /db_xref="InterPro:IPR015518" FT /db_xref="UniProtKB/TrEMBL:Q7W267" FT /protein_id="CAE39865.1" FT /translation="MGRIALFGSTDITVAVAEAILRAGHAIASITHVPRPFEISYSDKP FT VAISRQADVAQWCVAHAIPAIEYAGVDKSVEHFRNNPADLCVVAGWYHMLPSRLRDLFR FT LGAVGLHASRLPELRGGAPLNWAILAGFERTAVTLFALGDGVDDGPVYGQEAIDVGPND FT YIGELVARCNAASVVLVERCISGILDGSLVPAVQDGVASYGAQRSPEDGVIDWAAPAAG FT IARLVRAVSRPYPGASTWLDGRLVRIWRAGEYRAAAVYGAPGQILCLPGGQVVVATGKG FT AIEIEEAEDDGGQSVMVALRRSSHRRFRSQS" FT misc_feature 131820..132368 FT /note="HMMPfam hit to PF00551, Formyl transferase, score FT 7.5e-11" FT misc_feature 132438..132734 FT /note="HMMPfam hit to PF02911, Formyl transferase, FT C-terminal domain, score 6e-31" FT CDS 132752..133540 FT /transl_table=11 FT /gene="wbmT" FT /locus_tag="BPP0125" FT /product="hypothetical protein" FT /note="Almost identical to Bordetella bronchiseptica FT hypothetical protein Bblps1.02 SWALL:O87975 (EMBL:AJ007747) FT (262 aa) fasta scores: E(): 1.3e-109, 99.61% id in 262 aa" FT /db_xref="UniProtKB/TrEMBL:Q7W266" FT /protein_id="CAE39866.1" FT /translation="MTGTREGAAVETDSALKYHYSDFTREAYRSLLRTARASYVFRSYD FT TFDPQERFVLWRHDLDFSVHAASALAEIEAQEQVSSTYFLLLHSDFYNLLERDVSRKVE FT RILALGHRIGLHFDCGYYGISSVAQLEDMLAMEARLLERVFGQRIDVFSFHNPDAWMLQ FT QREVRYAGLLNTYSEFFRDQVGYCSDSNGYWRHRRLADVLEQAADHSLQVLTHPGWWVD FT EPMSPRDRIARCAEGRAAATMRKYDEDLACFGRDNIGKST" FT misc_feature 133511..133534 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 133537..134256 FT /transl_table=11 FT /gene="wbmS" FT /locus_tag="BPP0126" FT /product="hypothetical protein" FT /note="Identical to Bordetella bronchiseptica hypothetical FT protein Bblps1.03 SWALL:O87976 (EMBL:AJ007747) (239 aa) FT fasta scores: E(): 1.1e-105, 100% id in 239 aa" FT /db_xref="UniProtKB/TrEMBL:Q7W265" FT /protein_id="CAE39867.1" FT /translation="MKFARISDIDPGSPETWRGKVFLSFDIDWAEDFVLLDTLELIERA FT GVPATWFATHQTALLERIERHPGFELGIHPNFNNLLSAGSAQSAEQVLDAALALAPGCR FT SVRSHSLTQSTRLLALFADRGLGHECNALIPWDAGIPLRPWRHWDGTTVRVPHCWEDDI FT ACLAGWPLEGDAFYWYDPDGLNVLDFHPIHVYLNTETLERYEASRPVHRDSAALPAMRH FT GGQGVRTFLEKILVGAR" FT CDS 134253..135182 FT /transl_table=11 FT /gene="wbmR" FT /locus_tag="BPP0127" FT /product="putative formyl transferase" FT /note="Identical to Bordetella bronchiseptica putative FT formyl transferase Bblps1.04 SWALL:O87977 (EMBL:AJ007747) FT (309 aa) fasta scores: E(): 8.5e-127, 100% id in 309 aa. FT Weakly similar to Escherichia coli methionyl-tRNA FT formyltransferase Fmt SWALL:FMT_ECOLI (SWALL:P23882) (314 FT aa) fasta scores: E(): 4e-11, 27.74% id in 292 aa" FT /db_xref="GOA:Q7W264" FT /db_xref="HSSP:1GAR" FT /db_xref="InterPro:IPR015518" FT /db_xref="UniProtKB/TrEMBL:Q7W264" FT /protein_id="CAE39868.1" FT /translation="MKFVAIGRHEILLRTIEMLVDAGHELAGVLTAAPAPEYRADVDDF FT RSLAARKGVPCHVSNRYGPEMVAALAGLGAEIAVSYNFPTVIGHAAIDSFPRGILNAHG FT GDLPRYRGNACQAWALIQGEPAIGLCVHYMVADELDSGDVIAKAMLDVDHHTTIGTVAQ FT WMEQATPPLFVAALERLRHDPSYVLYRQCDDGRPALRCYPRQPSDGRIDWTKPAIDVVR FT HINASGHPYAGAFFYFESNAYRVDEAQWIDGGAYLAVPGQVAGRNPDGSVDVACGGGGL FT CRLARIADSAGHWDQPVNHIKSMRARLA" FT misc_feature 134253..134783 FT /note="HMMPfam hit to PF00551, Formyl transferase, score FT 1.1e-14" FT misc_feature 134865..135167 FT /note="HMMPfam hit to PF02911, Formyl transferase, FT C-terminal domain, score 7e-28" FT CDS 135205..136029 FT /transl_table=11 FT /gene="wbmQ" FT /locus_tag="BPP0128" FT /product="putative formyl transferase" FT /note="Identical to Bordetella bronchiseptica putative FT formyl transferase Bblps1.05 SWALL:O87978 (EMBL:AJ007747) FT (274 aa) fasta scores: E(): 1.5e-108, 100% id in 274 aa. FT Poor database matches to the full length CDS. C-terminal FT region is similar to internal region of Escherichia coli FT UDP-D-glucuronate dehydrogenase ArnA SWALL:AAL23678 FT (EMBL:AY057445) (660 aa) fasta scores: E(): 9.8e-15, 33.33% FT id in 204 aa" FT /db_xref="GOA:Q7W263" FT /db_xref="InterPro:IPR015518" FT /db_xref="UniProtKB/TrEMBL:Q7W263" FT /protein_id="CAE39869.1" FT /translation="MTTQVSKPRLALFVDNVGAAELWPAIGTLAPVCALVAAGIRPQYI FT ESLSALADEMGCSLLIQPRHDAPTYAGFVQQLAQTAPTRILVHSYSMILRPDVLSLVDY FT DALNIHAALLPRNRGPNPVQWALIHDEAETGVTLHYLDDGLDTGDIVAQERIGISDADT FT WVTLSKRLRQATGRLIERNMAALLDGRLPRTPQAQREATKNSRLTAESPRLDPYGMSDR FT ELFNWVRAQVDPLGGGYVEHAGGERLHVREYVALRDIPALRRRLCAWLEEVR" FT misc_feature 135226..135753 FT /note="HMMPfam hit to PF00551, Formyl transferase, score FT 9.7e-10" FT CDS 136026..136745 FT /transl_table=11 FT /gene="wbmP" FT /locus_tag="BPP0129" FT /product="conserved hypothetical protein" FT /note="Almost identical to Bordetella bronchiseptica FT hypothetical protein Bblps1.06 SWALL:O87979 (EMBL:AJ007747) FT (239 aa) fasta scores: E(): 1.4e-102, 99.58% id in 239 aa. FT Similar to Mycobacterium tuberculosis hypothetical protein FT Rv1507c SWALL:YF07_MYCTU (SWALL:P71786) (231 aa) fasta FT scores: E(): 4.7e-17, 30.76% id in 221 aa" FT /db_xref="InterPro:IPR014985" FT /db_xref="UniProtKB/TrEMBL:Q7W262" FT /protein_id="CAE39870.1" FT /translation="MSRSDARICAIHQPNFFPWLGYFDKIVRADIFVLLDDVQYQKTGG FT NWTNRVQMMIGQGPKWVTAPVDRSYSGVRQIREIRFSPVEREWREKLCSTITASYGRAA FT YFREVYPFIEPIIMNDSDFLSDYNSHAIAALCDYLEIESSKLVRSSQFNLQNNATDLLI FT DITKAVGAVRYLCGGGAQGYQEDEKFPRHGIQLIYQNFCHPIYTQANDAPFQPGLSIVD FT ALMHCGRRGVIELLNRK" FT CDS 136753..138051 FT /transl_table=11 FT /gene="wbmO" FT /locus_tag="BPP0130" FT /product="hypothetical protein" FT /note="Almost identical to Bordetella bronchiseptica FT hypothetical protein Bblps1.07 SWALL:O87980 (EMBL:AJ007747) FT (432 aa) fasta scores: E(): 1.9e-191, 99.76% id in 432 aa" FT /db_xref="UniProtKB/TrEMBL:Q7W261" FT /protein_id="CAE39871.1" FT /translation="MLEFVKNFIEKDFFKKNYVFLVKYVFGPLFRFRRKFLPRKAVLYV FT GQSYYHAWNCSHALRRLGWRADVLNWDMHEGSQIYYHGEDFRFTKHGEEGYQEQLDFYL FT KALWKYDIFHFSNIGGMVFGFPFQLSISEKFHRNFEIEALRYLGKKIVYSNSGCLDGVS FT QTTFSQWPPASVCSICVWRTRPDVCSDEKNLSWGKYRNQMADYQCLIGGNHADYNDDPR FT VHEEPEFYCIDPDLLHPDLEVPVRFKKEYPQGTICLYHAVGNLKDRTDDSGVNIKSTHV FT YLPLIDRLRSEGYPIELLSVTDVPNRDVRFYQVQADIFLDMLSFGFFGANGREALMLGK FT PLVCFLRPEWLESMRAEIPEYVDELPVVNATPETVYDVVKDLIENPEKRAEIGRRSRAF FT ALKWHSTDAAGRRMDRVYRRLLRDQGYDASRAP" FT CDS 138048..139217 FT /transl_table=11 FT /gene="wbmN" FT /locus_tag="BPP0131" FT /product="ABC transporter ATP-binding protein" FT /note="Similar to Aeromonas salmonicida ABC transporter FT protein AbcA SWALL:ABCA_AERSA (SWALL:Q07698) (308 aa) fasta FT scores: E(): 2.1e-22, 39.68% id in 252 aa. Identical to FT Bordetella bronchiseptica ABC transporter ATP-binding FT protein Bblps1.08 SWALL:O87981 (EMBL:AJ007747) (389 aa) FT fasta scores: E(): 2.3e-132, 100% id in 389 aa" FT /db_xref="GOA:Q7W260" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W260" FT /protein_id="CAE39872.1" FT /translation="MSIAIRRDEEIALSCHGVSKSFVISGEQNIWRMFCALPVRGEVFA FT ALRDVSLEVPRGKIVGILGRNGAGKSTLLRVLGGVYQPTSGTVDVRGQVCGLFEMGGFG FT NRELSGREYATRYLTVMGAPRKDRGDLLADIAEFSELGADFDRKILTYSAGMAARLYFS FT TATAMRHEIYLIDELLSVGDEHFQAKCWIRMRNLLLNGASGILVTHDWVSTLKLCQQSH FT ILERGSIVASGRTDAAVVKYLDLPVPDGALARFCDSDRATWHAVAGEDAVFEFDIESEE FT DIPLVFTYSVELMRIGIGWDIMLLGQRPIGSGNGRRRVQLKVPALPLAPGEYSLTVGLI FT KEKTRAEDEAVICDARGWTTGNGYVLEVSGTLEQGTTILPMEISGWIDD" FT misc_feature 138216..138728 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 3.5e-21" FT misc_feature 138237..138260 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 139210..140418 FT /transl_table=11 FT /gene="wbmM" FT /locus_tag="BPP0132" FT /product="ABC transporter ATP-binding protein" FT /note="Similar to Myxococcus xanthus O-antigen export FT system ATP-binding protein RfbB SWALL:RFBB_MYXXA FT (SWALL:Q50863) (437 aa) fasta scores: E(): 1.2e-27, 36.5% FT id in 378 aa. Identical to Bordetella bronchiseptica ABC FT transporter ATP-binding protein Bblps1.09 SWALL:O87982 FT (EMBL:AJ007747) (402 aa) fasta scores: E(): 6.6e-128, 100% FT id in 402 aa" FT /db_xref="GOA:Q7W259" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W259" FT /protein_id="CAE39873.1" FT /translation="MTDSDLWIQVSDVRKHYAIGKSGLSDALVSAQSSANTGPGEKIAV FT DGISLTIRNGERLGIVGRNGAGKSTLLHMVAGLSAPTAGKIDVHGRVTAIMTLGLGLRE FT HASGRENIYIDGEVQGKSRVEIDAVIDEIIEFAELGEFIDMPVRTYSTGMKSRLAFAMI FT SCLEPEILIIDEALSAGDAKFSAKATRKIQEICAKGRIVILVSHSMASIQSMCNRCLWI FT DQGKIVMDGLPDQVCKAYIDAVRSEDEAKLLERFRDEASTRFSLDGWDVDALYVLQGDT FT ATQRVLLEAGEDALIRTKIQVPTGCEEAQLVMSVTRLDGLVVTQRRIALDKYTEAGVAR FT VQFAMRPLVLGQGVYRLEIAAELGQALVASRSMIFEVFVRQPPTGGVPMLLYPSEATAS FT LLS" FT misc_feature 139372..139884 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.7e-41" FT misc_feature 139393..139416 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS 140425..141216 FT /transl_table=11 FT /gene="wbmL" FT /locus_tag="BPP0133" FT /product="ABC transporter integral membrane protein" FT /note="Identical to Bordetella bronchiseptica ABC FT transporter integral membrane protein Bblps1.10 FT SWALL:O87983 (EMBL:AJ007747) (263 aa) fasta scores: E(): FT 5.6e-98, 100% id in 263 aa. Similar to Myxococcus xanthus FT O-antigen export system permease protein RfbA FT SWALL:RFBA_MYXXA (SWALL:Q50862) (260 aa) fasta scores: E(): FT 3.2e-18, 26.8% id in 250 aa" FT /db_xref="GOA:Q7W258" FT /db_xref="InterPro:IPR013525" FT /db_xref="UniProtKB/TrEMBL:Q7W258" FT /protein_id="CAE39874.1" FT /translation="MRIFGLERRDIGLIYNFFVLNVRDKYLGSRLGSVWAIANPLCMLG FT IFTFVFGFVYKAKLPGADTTLAYVTWLISGYGPWIALSEALMAGTMSVVSASGLVKNLA FT FKTEILPLAAVATGVVPLTVSLVFLTILLVADGSMPSWHVAWIPLVILLQFFFIAAIAL FT WLSAITVFVRDISFVLPSVLTVLMFATPVFYALDMMPQVVRRVSEFNPLYIIVEGYRQP FT LIHHASPSAWGLAYVFGISLVIFYSGMKAFRRVKGNFEGAL" FT misc_feature 140434..141204 FT /note="HMMPfam hit to PF01061, ABC-2 type transporter, FT score 5e-99" FT misc_feature join(140521..140589,140647..140715,140749..140817, FT 140860..140928,140947..141015,141115..141168) FT /note="6 probable transmembrane helices predicted for FT BPP0133 by TMHMM2.0 at aa 33-55, 75-97, 109-131, 146-168, FT 175-197 and 231-248" FT CDS 141213..143813 FT /transl_table=11 FT /gene="wbmK" FT /locus_tag="BPP0134" FT /product="hypothetical protein" FT /note="Almost identical to Bordetella bronchiseptica FT hypothetical protein Bblps1.11 SWALL:O87984 (EMBL:AJ007747) FT (866 aa) fasta scores: E(): 0, 99.65% id in 866 aa" FT /db_xref="UniProtKB/TrEMBL:Q7W257" FT /protein_id="CAE39875.1" FT /translation="MTVARYTEASASGLARHFDAVIILTDQPWREDPLDPRYVRARHFA FT GQLPVVVVEPGSVTPTGPLRMSGGIEVVAMTAQPTHEAVDRLTEALHEHSIRRPLFWLE FT DCRAYLELLDCWPNAMTVYRASGGGVAVGAGATVALREAATLFRQAMPRYVHLLVATDE FT HVAATYRRYGEYAGRIEVLADAYGSNFGQYLSVPQEAVPSRSVLYHGPIDEALDYELLH FT QLVHLLPDWKFVFCGAADDQLPAWRGLAAHGNVSHTPTPSAADLGAQCADAMAGILPFN FT MDARWTSRRRAAQALYEAAGLPVLDRAEGECQLQAQAWVAALHSSLAEGRAEAGADHKP FT GSSLLDAASHGAALGAMVEDAYLALLRRPLDHRLNVLVLYDDRWTHIGTVEEHLGAFQK FT YSRHNIFYLPVTRQSPEQDRRLAAEIDLSVFDVVIMHYAVRLSLKDYLPEPMALRIRRF FT TGLKVLFIQDEYDTTNTAKAWIKRLAFDIVYTCVPPAGREYVYPASDFHWTEFLSTLTG FT YVPEDPSLGQYLLPLREREILVAYRGRMLPYFYGSLGWQKYRIGVDVKALAQERGLPVD FT IEVDDTKRIYGTDWYRFLGSARATLGTESGSNVFDFDGNVRSEIERRLAQNPELPFAEL FT YNELLEPLERNIRMNQISPKIFEAIRLRTALVLFEGEYSGALTPGVHYIALSQDYANID FT EVFARLQDLDFLERMTERAYEDIVASGRYSYRSFVEGVDADIEQRWLCGPRARIYAAPV FT LATDRHGAAHVIMPSGTSGWCLSTSILSGTLQREQLAGHMSTAMGNWAQIMLAERKAAR FT RAYLRAQPRRYAGAAYRRSIALARRVWHRIPMPAAFRRQVVRGVRAAKTRLMGR" FT CDS 143869..146505 FT /transl_table=11 FT /gene="wbmJ" FT /locus_tag="BPP0135" FT /product="hypothetical protein" FT /note="Almost identical to Bordetella bronchiseptica FT hypothetical protein Bblps1.12 SWALL:O87985 (EMBL:AJ007747) FT (878 aa) fasta scores: E(): 0, 99.54% id in 878 aa" FT /db_xref="GOA:Q7W256" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7W256" FT /protein_id="CAE39876.1" FT /translation="MRRVERLLLVCYYDPNGIETVLDNIGYVKAYSAFHVDILNLFGAA FT SALTRGEGYRLAAYDGVIIHNTISYNPANLESIDRQFVPALSQYEGVKIIFKQDEQYRT FT LAVAEFIGSRAFDLVFTCVDAQERAKVYPPDVVGDRVVFRQMYTGYVTPKLRARTTTGV FT ERDIDISYRGSLQPLYFGRLAYDKRRIGDEVLHAAQGTGLKTDISSRWEDRLMGEDWFR FT FLARSKSTLGVESGASIFDFDGAVEKLCGELEQRRSDFTDEHKYSEWVLQQLEPYEGNV FT YYNQISPRHFEAGAARTLQVMYEGRYSDIFQPWKHFVPLRKDLGNFQQVCEYVLDPRLR FT GEIVDRVYDEIIANPIYSMKHFIGELDQAVAEALERKPNRAAPTRRVPADGRDNVLLLC FT AHLPAADPRIGWVADFAPAGIRVHVMGMADDIAAPLVRQRAQGGLEITQPRGTGADWER FT LALMQDEQGAGLDVLCRLRMLEQMSQAQLNVLVDGGVTAERAYEFNWMCSYLRRTSQAL FT VAAAMNASGYSAIVAADFDSLIAAVVLKRLYGIPVLYDAHEFWPTSLGPATAPWEVALW FT QRLERRLLSEVDKSISVSPQLAAHMSNFYGHSFEAVPNCEPLQAATEPAPQHAPRDECV FT FLFQGNFMPGRGLALLIEAWGRTHPSAILQLRGPDRPYKRELERLAERTGLLGTRIFFP FT EAVAENALVAAAAQADVGLVPYEPTTLNSKYCSPNKLSQYMAAGLPILANRLEFVAQEI FT SLAGCGSVVDFAHGDELVRVVDHYAVDAQLRQREGECGRRYFRQHFHWEAVSAPLYTAL FT ASLSALPGKHESFSINVAGIGDGVGAGVDPRPVWKRTLSRLWGMLPTPAKSALKPMLLK FT LIARFRG" FT CDS 146606..148516 FT /transl_table=11 FT /gene="wbmI" FT /locus_tag="BPP0136" FT /product="putative asparagine synthetase" FT /note="Identical to Bordetella bronchiseptica putative FT glutamine amidotransferase Bblps1.13 SWALL:O87986 FT (EMBL:AJ007747) (636 aa) fasta scores: E(): 0, 100% id in FT 636 aa. Similar to Bacillus subtilis asparagine synthetase FT [glutamine-hydrolyzing] 1 AsnB or Asn SWALL:ASNB_BACSU FT (SWALL:P54420) (632 aa) fasta scores: E(): 2.9e-44, 32.76% FT id in 641 aa" FT /db_xref="GOA:Q7W255" FT /db_xref="HSSP:1CT9" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/TrEMBL:Q7W255" FT /protein_id="CAE39877.1" FT /translation="MCGIFGALWHQGKSVSAIEQQLQVGIARQQHRGPDGHGTWIDPQG FT RLGLAHVRLSIIDLVSGAQPMRGNSGNVITYNGEIYNYIELRRELGEDSFETTSDTEVI FT LRAYEKWGERCVDRLEGMFAFAIWDAKRGEMFVARDRFGIKPFYYACVQGGFYFGSEVK FT ALTPFLNRVETDANALHDYFAFQFCLGEKTLFAGVRQLKPAHCGYVGRDLELKQRQYWE FT VQYDLDWDHTEKYFVEQVREKLQHSVDMHMRSDVEVGAYISGGVDSSLVAAMARHGRRS FT SRFQGFTGKFALGDAFDESRYAQALADEHDILLHQVDITEDDFVNDIAKVIYHLDQPVA FT GPGSFPQYAVSRLAKDHVKVVLGGQGSDEMFGGYARYLIAYWEQCIKGALDGTMHDGNY FT IVTYESIIPNLRTLRNYKPLIQEFMAEGIFDSRDKRYYRLINRSNTFGNVVNWGMFEGI FT ASSFDDFKQIFWGKNVGKESYFDSITHFDFKTLLPALLQVEDRMSMAHGIESRVPFLDH FT KLIELVATVPANVKFQNGELKRLLRVAFQDMLPQAIRERKDKMGFPVPLQVWMRKGGKA FT REFILDTFRSQNARSRAYLAPGFDIEKMMEQEGLFSRNIWAFLSLELWQQQFHDVHRQT FT I" FT misc_feature 146606..146623 FT /note="PS00443 Glutamine amidotransferases class-II active FT site." FT misc_feature 146609..147055 FT /note="HMMPfam hit to PF00310, Glutamine amidotransferases FT class-II, score 2.2e-29" FT misc_feature 146624..146647 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 147257..148159 FT /note="HMMPfam hit to PF00733, Asparagine synthase, score FT 3.2e-132" FT CDS 148545..149486 FT /transl_table=11 FT /gene="wbmH" FT /locus_tag="BPP0137" FT /product="nucleotide sugar epimerase/dehydratase" FT /note="Identical to Bordetella bronchiseptica putative FT nucleotide sugar epimerase/ dehydratase Bblps1.14 FT SWALL:O87987 (EMBL:AJ007747) (313 aa) fasta scores: E(): FT 1.3e-126, 100% id in 313 aa. Weakly similar to FT Lactobacillus casei UDP-glucose 4-epimerase GalE FT SWALL:GALE_LACCA (SWALL:O84903) (331 aa) fasta scores: E(): FT 1.2e-10, 29.45% id in 309 aa" FT /db_xref="GOA:Q7W254" FT /db_xref="HSSP:1DB3" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7W254" FT /protein_id="CAE39878.1" FT /translation="MKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDH FT PNLTFVEGSIADHALVNQLIGDLQPDAVVHTAASYKDPDDWYNDTLTNCVGGSNVVQAA FT KKNNVGRFVYFQTALCYGVKPIQQPVRLDHPRNPANSSYAISKSANEDYLEYSGLDFVT FT FRLANVVGPRNVSGPLPIFFQRLSEGKKCFVTKARRDFVFVKDLARATVRAVDGVGHGA FT YHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGPDDAPSILLDPSRTIQDFGKIEF FT TPLKETVAAAVAYFREYGVSGGYTHLKINENK" FT misc_feature 148554..149441 FT /note="HMMPfam hit to PF01370, NAD dependent FT epimerase/dehydratase family, score 1.4e-15" FT CDS 149491..150423 FT /transl_table=11 FT /gene="wbmG" FT /locus_tag="BPP0138" FT /product="nucleotide sugar epimerase/dehydratase" FT /note="Identical to Bordetella bronchiseptica putative FT nucleotide sugar epimerase/ dehydratase Bblps1.15 FT SWALL:O87988 (EMBL:AJ007747) (310 aa) fasta scores: E(): FT 1.6e-120, 100% id in 310 aa. Weakly similar to FT Lactobacillus casei UDP-glucose 4-epimerase GalE FT SWALL:GALE_LACCA (SWALL:O84903) (331 aa) fasta scores: E(): FT 4.2e-12, 28.61% id in 325 aa" FT /db_xref="GOA:Q7W253" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7W253" FT /protein_id="CAE39879.1" FT /translation="MRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVA FT GLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAAYKDPDDWAEDAATNVQGSINVAKAAS FT KAGVKRLLNFQTALCYGRPATVPIPIDSPTAPFTSYGISKTAGEAFLMMSDVPVVSLRL FT ANVTGPRLAIGPIPTFYKRLKAGQKCFCSDTVRDFLDMSDFLAIADLSLQEGRPTGVFN FT VSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGADDVPSVVLDPSKTETEFGWKAKVD FT FKDTITGQLAWYDKYGVTDIFSHLSAPKT" FT misc_feature 149497..150381 FT /note="HMMPfam hit to PF01370, NAD dependent FT epimerase/dehydratase family, score 5.4e-16" FT CDS 150428..151501 FT /transl_table=11 FT /gene="wbmF" FT /locus_tag="BPP0139" FT /product="nucleotide sugar epimerase/dehydratase" FT /note="Identical to Bordetella bronchiseptica putative FT nucleotide sugar epimerase/ dehydratase Bblps1.16 FT SWALL:O87989 (EMBL:AJ007747) (357 aa) fasta scores: E(): FT 3.9e-140, 100% id in 357 aa. Similar to Lactobacillus casei FT UDP-glucose 4-epimerase GalE SWALL:GALE_LACCA FT (SWALL:O84903) (331 aa) fasta scores: E(): 5.6e-13, 28.57% FT id in 329 aa" FT /db_xref="GOA:Q7W252" FT /db_xref="HSSP:1BXK" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7W252" FT /protein_id="CAE39880.1" FT /translation="MPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDN FT LLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHE FT NNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSM FT SKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKA FT LKGMPLPLENGGVATRDFIFVEDVANGLIACAADGTPGGVYNIASGKETSIADLATKIN FT EITGNNTELDRLPKRPWDNSGKRFGSPEKARRELGFSADVSIDDGLRKTIEWTKANLAV FT IEQIMRKHDSALATYGK" FT misc_feature 150470..151441 FT /note="HMMPfam hit to PF01370, NAD dependent FT epimerase/dehydratase family, score 3.5e-34" FT CDS complement(151864..153045) FT /transl_table=11 FT /gene="wbmE" FT /locus_tag="BPP0140" FT /product="putative exported protein" FT /note="Almost identical to Bordetella bronchiseptica FT putative secreted protein Bblps1.17C SWALL:O87990 FT (EMBL:AJ007747) (393 aa) fasta scores: E(): 6.3e-146, FT 99.74% id in 393 aa" FT /db_xref="InterPro:IPR002931" FT /db_xref="UniProtKB/TrEMBL:Q7W251" FT /protein_id="CAE39881.1" FT /translation="MIRKSYIIGLLLTLLLGSGLGGYALQRATSATPAATNATAKPAAE FT PATREVEKSNESPPPAGLATPSGYDGGQLPCMQKESMERYACLVRTAGEGAANVTPGGK FT GEAAGASPLTQMFMVTEAMNLIRTLASSARYSWNQSTLGAGFIKPNMAQQEICLDGGFG FT ICGNHQYLFLELMHRLGLEARSVGFWYIDPNANSRASHAAAEVLVDKKWRYVDITWGSL FT WLAQRNDLLSAMSLDEVLAGKGHRFTGTTDVWYIAQRMAKYDPFIYLKGRDLQVTRDGG FT GLLQIKLADQAEKFAHMPNYVGTVPERATMEMQISSNHKHTELQVNISGMAGCKQSRLQ FT IGDEEFDIRPGTILTNTFQQQDRISVQGSDPHCYVVLSSIEPIRSAKRASAPN" FT misc_feature complement(152926..153045) FT /note="Signal peptide predicted for BPP0140 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.394 between residues 40 and 41" FT CDS complement(153168..154190) FT /transl_table=11 FT /gene="wbmD" FT /locus_tag="BPP0141" FT /product="putative membrane protein" FT /note="Almost identical to Bordetella bronchiseptica FT putative membrane protein Bblps1.18c SWALL:O87991 FT (EMBL:AJ007747) (340 aa) fasta scores: E(): 5.8e-131, 99.7% FT id in 340 aa" FT /db_xref="UniProtKB/TrEMBL:Q7W250" FT /protein_id="CAE39882.1" FT /translation="MAALRPAHTDKAEDFAVESMHEFAERSEIGRGMKLPELTQSSRSA FT IVVATIVASGLLLLGLLTAPALEAQDNRSNQDSARASSRAIKTLAVDTAKLSCLTPALI FT QQIKSDLPNIADAYNECRAEITERTKDMQLDDLGHRVVFATIATNASAPFGSFSAYKLP FT DLLAAPSLTSDNYLLLLGNYLDALHVTPKRSQMRMLGFDGGATGNYAQGMITISGTSLL FT LDPTIGMVVKIGFDDLLSSRRAAARNFVIAYMHDDPGITAVMKRISNSVYNGLYKPSDL FT LYYFFSPEYFMAFNGIIPAGQLKNVHPPLLRFPTPGATSLARTQAQNQQAAPKPAATEN FT " FT misc_feature complement(153993..154058) FT /note="1 probable transmembrane helix predicted for BPP0141 FT by TMHMM2.0 at aa 25-47" FT CDS complement(154266..156152) FT /transl_table=11 FT /gene="wbmC" FT /locus_tag="BPP0142" FT /product="putative glutamine amidotransferase" FT /note="Almost identical to Bordetella bronchiseptica FT putative glutamine amidotransferase Bblps1.19c SWALL:O87992 FT (EMBL:AJ007747) (628 aa) fasta scores: E(): 0, 99.04% id in FT 628 aa. Similar to Bacillus subtilis asparagine synthetase FT [glutamine-hydrolyzing] 1 AsnB or Asn SWALL:ASNB_BACSU FT (SWALL:P54420) (632 aa) fasta scores: E(): 2.5e-34, 29.7% FT id in 643 aa" FT /db_xref="GOA:Q7W249" FT /db_xref="HSSP:1CT9" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/TrEMBL:Q7W249" FT /protein_id="CAE39883.1" FT /translation="MCGVLGAWWRHHDEHEDARFAAGLRKLAHRGPDDRGSEHFAAPHG FT RLSLGHTRLAVIDLSAAGHQPMHADADRLAVVFNGEIYNYRELRSELRQIDAIFRGDSD FT TEVLLAAWQHWGVAALRRFKGMFAFALYDRRQQTLTLARDAFGIKPMYYHAAPERLLFG FT SELPAVQALLPHPPRLNWQRAYDYLAYGQYDQPPDTFIAGIRQLPAGHLLTLDLRTGRA FT GEPMAWDDPASQECRPIGFQEAAEELRARFLDNVRLHLRSDVPIGAALSGGIDSSAIVC FT AMRWLEPDLPIQTFSFISDDAHRSEERWVDLVNQHCGATGHKIHIAPHELLDDLDDLIR FT VQGEPVGSTSIYAQYRVFKLAREHGVVVTLDGQGADELLGGYGGYPTERLASLLETSRL FT GAAARLLRQQGRGAPARLLQAAALAAGGRHLANLRHATGRQHAPAWLDAQVLRDQGVTM FT REPAHAWAAATPLRGRRLVNELAHALYHRGLGALLRHGDRNSMRFSVESRVPFLTQDLA FT EFALSLPERYLVSDSGQTKHIFRKAMRGIVPDLILDRDDKIGFATPEQQWMQATAPQMR FT QWLVDAADIPFLRNAEVTAQFDAMIAGATPFSWQAWRWVNFQRWMQHATVLP" FT misc_feature complement(154482..155480) FT /note="HMMPfam hit to PF00733, Asparagine synthase, score FT 4.2e-12" FT misc_feature complement(155691..156149) FT /note="HMMPfam hit to PF00310, Glutamine amidotransferases FT class-II, score 3e-18" FT misc_feature complement(156135..156152) FT /note="PS00443 Glutamine amidotransferases class-II active FT site." FT CDS 156214..157314 FT /transl_table=11 FT /gene="wbmB" FT /locus_tag="BPP0143" FT /product="hypothetical protein" FT /note="Almost identical to Bordetella bronchiseptica FT hypothetical protein Bblps1.20 SWALL:O87993 (EMBL:AJ007747) FT (361 aa) fasta scores: E(): 7.6e-148, 99.44% id in 361 aa. FT C-terminus is weakly similar to the the C-terminal regions FT of Xylella fastidiosa hypothetical protein XF0885 FT SWALL:Q9PEZ3 (EMBL:AE003928) (443 aa) fasta scores: E(): FT 0.21, 24.77% id in 327 aa" FT /db_xref="UniProtKB/TrEMBL:Q7W248" FT /protein_id="CAE39884.1" FT /translation="MSNAIMAGLFWLGDMRIAYLTFELPDTRTGVGKKILAQGNFWRAA FT GNQVRNFVLRAPAFPALNEVEFLCQRRPGGPMVAAMLSGARIGAALEAWRPDVIYARQM FT LWWPGALRALRAAPLIIEYNSIARNEYRSSSKLKYLLEITSSRYFPRQARGIVAVTPEL FT LATVPATQAEGIVIGNGYDFAKAVPRAAPDNARARLLLVGSLGQPWLGADKVARMAALM FT PEYDFDVVVPGLKLAGPPNLYCHGALFDADLAARYAATDVALGTLALHRKGMAQAAPLK FT TREYLAYGIPVVGGYDDPDLDGAAYWLNIGNAEDNIDRNIENIRNFVTQWRGRLPDRGD FT IESRLGFSGKECARLDFFERVRQHAG" FT CDS 157304..158521 FT /transl_table=11 FT /gene="wbmA" FT /locus_tag="BPP0144" FT /product="putative glycosyl transferase" FT /note="Almost identical to Bordetella bronchiseptica FT hypothetical protein Bblps1.21 SWALL:O87994 (EMBL:AJ007747) FT (405 aa) fasta scores: E(): 1.7e-167, 99.75% id in 405 aa. FT Poor database matches. C-terminus is weakly similar to the FT C-terminal region of Escherichia coli putative colanic acid FT biosynthesis glycosyl transferase WcaL SWALL:WCAL_ECOLI FT (SWALL:P71243) (406 aa) fasta scores: E(): 0.00051, 22.75% FT id in 334 aa" FT /db_xref="GOA:Q7W247" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7W247" FT /protein_id="CAE39885.1" FT /translation="MPVRRIALITNGYPDIYARERSFILPELKALLAYGHQVTLVPVRE FT VTEVDPDLPDGVAVERQLAHLYRPWQLPATVLWMMFRGYFWREAWQCLGRGRLRYLGHF FT FKESVRATNTLRMQSALRDYDVLYTYWFKGESTGISLMPGTHARRLTRAHGYDLYEDRP FT NNEGYIPYREMTLPRLDRVVVLSEEARAYLEQRYPASVGRTVVSPLGVAHESDENPGPE FT ADRIVLVSCSYPTPNKRLPLIGQLAAAVACARPSVKVVWMHFGCRREEAGLPVDFAGPP FT NLSVQFAGEAPNEHIRRWYATRPVSFFVNLSQSEGQPVSIMEAMAFGIPVMATGVGGIP FT EMLRHGGGMTLPEQPDVNAVAREMLSLLDDPSRYQAMREAARETQLAYFNTSANHRTLA FT DLIGEF" FT misc_feature 157934..158455 FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1, score 3.4e-10" FT CDS complement(158539..160413) FT /transl_table=11 FT /gene="bplL" FT /gene_synonym="wlbL" FT /locus_tag="BPP0145" FT /product="lipopolysaccharide biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0082" FT /db_xref="GOA:Q7W246" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7W246" FT /protein_id="CAE39886.1" FT /translation="MTLPYAIRRLFVDLPRPFKQMLAIVLDAVILLGAFHLALWLRFEL FT FFLTDQYLFLSLLACAGGIAALAAFGVYLYILRYMSERVLAAILGGIVVSVMVVTAGNT FT FLQLATISRGVLVLYAALALVGLIGVRLIARKLLFPADHHMADPRTPVLIYGAGGAGSQ FT LAMALRAGPHYRPVAMLDDDKRKHRLVVNGLRVYPPEQLPKLIDRHNIRQLLIAMPSAP FT PKQIRSIVEAAEPYRLRIRLVPSMRELIDPTNGVRLRDVQVEDLLGRDPVAPIDTLLGR FT CVTDRVVMVTGAGGSIGSELCRQILALRPRKLVLFEIAEPALYAIEQDLRQRIGERNIE FT IAGVLGSVRDAAHCLAQLQEHGVQTIYHAAAYKHVPIVEHNVSEGIRTNAFGTLNMAET FT AIQAGVLDFVLISTDKAVRPTNVMGASKRLAELILQAHAQIQDKTRFSMVRFGNVLGSS FT GSVVPLFRRQILEGGPITLTHPEITRYFMTIPEAAQLVLQAGAMGESGSVFVLDMGEPV FT LIRELAERMVRLYGLTVKNSDQPDGDIEIRITGLRPGEKLYEELLIGEDSRETLHPRIM FT RATEYSLPYETLMEQLRMLDRSLQMCSPRQAAELLGQIVREYASVTYA" FT misc_feature 158539..173214 FT /note="Lipopolysaccharide biosynthesis locus" FT misc_feature complement(158563..160149) FT /note="HMMPfam hit to PF02719, Polysaccharide biosynthesis FT protein, score 0" FT misc_feature complement(158884..158919) FT /note="PS00135 Serine proteases, trypsin family, serine FT active site." FT misc_feature complement(join(159901..159957,160018..160083, FT 160096..160161,160183..160248,160294..160350)) FT /note="5 probable transmembrane helices predicted for FT BPP0145 by TMHMM2.0 at aa 21-40, 55-77, 84-106, 110-132 and FT 152-171" FT CDS complement(160462..161709) FT /transl_table=11 FT /gene="bplJ" FT /gene_synonym="bplK" FT /gene_synonym="wlbjK" FT /locus_tag="BPP0146" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0083" FT /db_xref="UniProtKB/TrEMBL:Q7W245" FT /protein_id="CAE39887.1" FT /translation="MCAVALGFSGSSIYVLDPLRPFHFGAALILALIALDRQWRRAVLD FT SALTRWLAATAAVLLIQLLWVEHTDRYLRFLAFLLTGVCYTVLADALVRRRVDFAEGLY FT PIVLYWLITAAMPIYDAWTGSGRFRMSYPLTGGVWYNINDMATALVFANLIWLLIKRKL FT SFPLYLTCWFYALAMNRRTILLAASVLGLLYLLGYARRLKHGNRALLAGALLATSAAAL FT VLHHGNFQFGTLPSLAPRAQVGAGAVLTPASTAAADETIQSAQAGEDMPPVDEIGVIAN FT NGDHSTAYRVQLLLDMYAQIRDMPWWQWAFGLGLGQLNLMWPATDAQWASPHFFWLEMF FT FHLGLLWVAFLGWLLVRSDSTGRICLITAAIAGMAPSSMIYLQPFWFLVGVCVAVLPQK FT NGAPSRPAAFPQHASQ" FT misc_feature complement(join(160552..160617,160639..160704, FT 160735..160791,161017..161082,161113..161163, FT 161233..161298,161344..161409,161431..161496, FT 161512..161568,161605..161670)) FT /note="10 probable transmembrane helices predicted for FT BPP0146 by TMHMM2.0 at aa 13-35, 47-66, 71-93, 100-122, FT 137-159, 182-199, 209-231, 306-325, 335-357 and 364-386" FT CDS complement(161759..162463) FT /transl_table=11 FT /gene="bplI" FT /gene_synonym="wlbI" FT /locus_tag="BPP0147" FT /product="lipopolysaccharide biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0085" FT /db_xref="UniProtKB/TrEMBL:Q7W244" FT /protein_id="CAE39888.1" FT /translation="MMTLLPLLVIASYSIIHLLEYLSYYARVAGRMAGKPVTGYAIQNA FT TTTVTRFFYLALMPLLGFLVDKQVPTSLYLQMGLAAMFGAALLSLLGYWLRYSWIALLT FT NAVRKRAGQPPLRVEEIRTALEAPASLPKKRIALLAAIVFLCYCLGVLLSYFFALVFHE FT YRSTISQLSGLINGVATVLLTFVLEPRIAGIVDARPTHDVYHAIQAMLNGRLIAIGLLA FT PALFFEVCIGFV" FT misc_feature complement(join(161765..161830,161894..161959, FT 161990..162055,162164..162229,162269..162322, FT 162386..162451)) FT /note="6 probable transmembrane helices predicted for FT BPP0147 by TMHMM2.0 at aa 4-26, 47-65, 78-100, 136-158, FT 168-190 and 211-233" FT CDS complement(162460..163566) FT /transl_table=11 FT /gene="bplH" FT /gene_synonym="wlbH" FT /locus_tag="BPP0148" FT /product="putative glycosyl transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0086" FT /db_xref="GOA:Q7W243" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7W243" FT /protein_id="CAE39889.1" FT /translation="MLGPARSIHTIRWANGLALRGLQVHLLSLETPDLSLYDERIVQYR FT LPWRAPLGYFLAAPRLRALLKRIDPDLLNVHYATGYGLLARRARFSPVLLSAWGSDIYE FT FPNSSTWHKALLQRNLDHATALAATSHAMQREMRGLTRRPIFVTPFGIDEALSQPAQSV FT QAPAADGPIVIGTVKALETHYGIDTLIQAFALLRQALAASQPGMAERLVLRIYGAGSQL FT QRLRAQAQAAHIANQVEFKGRIPHAEVPEALRALDVYVALSRMDSFGVAILEACSCALP FT VVVSNADGPAEVVVDGKTGYIVAREDAHAAADRLQELVLNPELRQRLGAAGRARVLSEY FT TWSKSLDMMLDAYTETARLYRATQPASV" FT misc_feature complement(162562..163098) FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1, score 4.2e-49" FT CDS complement(163828..164421) FT /transl_table=11 FT /gene="bplG" FT /gene_synonym="wlbG" FT /locus_tag="BPP0149" FT /product="probable sugar transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0087" FT /db_xref="GOA:Q7W242" FT /db_xref="InterPro:IPR003362" FT /db_xref="UniProtKB/TrEMBL:Q7W242" FT /protein_id="CAE39890.1" FT /translation="MIKRLFDVVCSGLGLLALLPLLALIAIAIKLDSPGPVFFRQERVG FT KGGVPFRIHKLRSMSVRQDPQAGQITVGADPRITRVGKWIRKWKLDELVQLIDVFTGSM FT SLVGPRPEVPRYVVLYPDALRNLILSVRPGITDPASIRFRNENEILGQSSDPERTYREI FT ILPEKLRIQAEYVQTRTFLGDLKIIAHTLLAVAR" FT misc_feature complement(163834..164415) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02397, Bacterial sugar transferase, FT score 5.3e-15" FT misc_feature complement(164335..164400) FT /note="1 probable transmembrane helix predicted for BPP0149 FT by TMHMM2.0 at aa 7-29" FT misc_feature complement(164338..164421) FT /note="Signal peptide predicted for BPP0149 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.991) with cleavage site FT probability 0.704 between residues 28 and 29" FT CDS complement(164418..165650) FT /transl_table=11 FT /gene="bplF" FT /gene_synonym="wlbF" FT /locus_tag="BPP0150" FT /product="lipopolysaccharide biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0088" FT /db_xref="GOA:Q7W241" FT /db_xref="HSSP:1B9H" FT /db_xref="InterPro:IPR015422" FT /db_xref="UniProtKB/TrEMBL:Q7W241" FT /protein_id="CAE39891.1" FT /translation="MPPAARLSLLQRSSTMSDFLPFALPDIGEAEIQAVTESMRSGWLT FT TGPNAREFEREFAAYMGADVEAVAVNSATAGLHLALEAIGVGPGDEVITTTHTFTASAE FT VARYLGAEPVLVDIDPATLCISPAAIERAITPRTRAIVPVHYGGLSCDMDSILEIARKH FT GLKVIEDAAHALPASWQGRRIGSLESDLTVYSFYATKTLATGEGGMVVTRDPALAKRCR FT VMRLHGIDRDAFDRFTSKKPAWYYEIVAPGFKYNMTDTAAAMGRVQLQRVQQMRDRRAQ FT IAAAYDQAFADLPLTLPPSPGRTPGVERAAHRDDDEHSWHLYAIRIHPQAPLKRDDFIV FT RMTENGIGCSVHYVPLHLQPYWRDRYGLTPDMYPHSQAAFEGMASLPIYSRMTDADVQR FT VIASVRQLLHP" FT misc_feature complement(164436..165578) FT /note="HMMPfam hit to PF01041, DegT/DnrJ/EryC1/StrS FT aminotransferase family, score 2.8e-201" FT CDS complement(165668..166927) FT /transl_table=11 FT /gene="bplE" FT /gene_synonym="wlbE" FT /locus_tag="BPP0151" FT /product="probable glycosyl transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0089" FT /db_xref="GOA:Q7W240" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7W240" FT /protein_id="CAE39892.1" FT /translation="MNILLINHYAGSPRYGMEFRPYYFGREWIGHGHQVKVAASTISHI FT RARAPQAGGRLTRENVDGIEYLWYATLPYQGNGARRLLNMLQFSARLYGLRRDLGGWRP FT DIVIASSTHPYDVLPAARLARQTGARLVFEVHDLWPLTPRLLGGFKAWHPMIASMQYAE FT DYAYRHADLTVSMLPCALPYMRERGLDPRRYAHVPNGVPVTEYSSPDFDNPDYLRVRAQ FT IRQLREQCDFVLAYAGTHGHANALDMLLQAMARLRDQPIGLLLLGDGPDKPELKRLAGQ FT LGLRHIAFADPVPRPAVQAVMADIDAAYIGLRRSPLFQFGVSPNKLFDYMLSACPVVQS FT IESGNDIVADARCGVSVPAEDPAALAAALHGLRALPAAERQAMGRRGRDYVLARHDYPV FT LAQQFLDAVQSVTPRRAASR" FT misc_feature complement(165758..166276) FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1, score 2.6e-05" FT CDS complement(166951..167937) FT /transl_table=11 FT /gene="bplD" FT /gene_synonym="wlbD" FT /locus_tag="BPP0152" FT /product="UDP-N-acetylglucosamine 2-epimerase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0090" FT /db_xref="GOA:Q7W239" FT /db_xref="HSSP:1O6C" FT /db_xref="InterPro:IPR003331" FT /db_xref="UniProtKB/TrEMBL:Q7W239" FT /protein_id="CAE39893.1" FT /translation="MVHTGQHFDANMSDVFFDELGMQTPTHQLDIHGGGHGDMTGRMLV FT ALEQVMQAEKPDVVLVYGDTNSTLAGALAAVKLHIPVAHVEAGLRSFNLRMPEEVNRIL FT TDRISRWLFTPTDSATRHLAAEGQSGEKVVQVGDVMYDVALHHGARVTAEGRALAAHGL FT KPGGYVLATIHRAENTDDAQRLTTIVRALQALAAERQVVWPLHPRTRGILARLGLLDEL FT ASTVTLLEPVGYLDMVQLEKYAALIATDSGGVQKEAFFHRIPCVTLRDETEWTELVDAG FT WNRLAPPVSSAVVAQAVQDALREQPRDVQPYGDGQAARRIVDALAAH" FT misc_feature complement(166960..167904) FT /note="HMMPfam hit to PF02350, UDP-N-acetylglucosamine FT 2-epimerase, score 1.1e-184" FT CDS complement(168047..169147) FT /transl_table=11 FT /gene="bplC" FT /gene_synonym="wlbC" FT /locus_tag="BPP0153" FT /product="lipopolysaccharide biosynthesis protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0091" FT /db_xref="GOA:Q7W238" FT /db_xref="HSSP:1B9H" FT /db_xref="InterPro:IPR015422" FT /db_xref="UniProtKB/TrEMBL:Q7W238" FT /protein_id="CAE39894.1" FT /translation="MQFIDLKTQYQALRDTINPRIQAVLDHGQFIMGPEVKELEAALCA FT YTGAKHCITVASGTEALLISLMALGVKAGDEVITTSFTFVATAEVIALLGAKPVFVDVE FT PDTCNIKVSEIEAKITPRTKAIIPVSLYGQCGDMDEVNAVAARHGLPVIEDAAQSFGAT FT YKGRKSCNLSTIGCTSFFPSKPLGCYGDGGALFTNDDELAQAMREIRVHGQSGRYYHTR FT IGVGGRMDTLQCAVVLGKLERFDWEIAQRIKIGARYQQLLADLPGGACTVTVRPDRDSV FT WAQFTVMVPNREAVIAQLKEAGIPTAVHYPRPIHAQPAYEQYAEGAGATPVSDDLAARV FT MSLPMHPDLDEATQDKIVAALRQALN" FT misc_feature complement(168062..169117) FT /note="HMMPfam hit to PF01041, DegT/DnrJ/EryC1/StrS FT aminotransferase family, score 4.1e-180" FT CDS complement(169151..169726) FT /transl_table=11 FT /gene="bplB" FT /gene_synonym="wlbB" FT /locus_tag="BPP0154" FT /product="probable acetyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0092" FT /db_xref="GOA:Q7W237" FT /db_xref="InterPro:IPR018120" FT /db_xref="UniProtKB/TrEMBL:Q7W237" FT /protein_id="CAE39895.1" FT /translation="MTTIHPTAIVDEGARIGANSRIWHWVHICGGAEIGAGCSLGQNVF FT VGNRVRIGDRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERKNEYRDTLVR FT QGATLGANCTIVCGATVGRYAFVGAGAVVNKDVPDFALVVGVPARQIGWMSRHGEQLDL FT PLAGNGQARCPHTGDLYILENGVCRLGE" FT misc_feature complement(169166..169192) FT /note="PS00572 Glycosyl hydrolases family 1 active site." FT misc_feature complement(169358..169411) FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 0.47" FT misc_feature complement(169529..169582) FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 0.55" FT misc_feature complement(169583..169636) FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 0.14" FT misc_feature complement(169637..169690) FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats), score 0.25" FT CDS complement(169730..170941) FT /transl_table=11 FT /gene="bplA" FT /gene_synonym="wlbA" FT /locus_tag="BPP0155" FT /product="probable oxidoreductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0093" FT /db_xref="GOA:Q7W236" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7W236" FT /protein_id="CAE39896.1" FT /translation="MRTMRIRFGINNQRDLSGKSLRDSRYYCRLFSPAAVRGGIRRISA FT IYLNPSAFMSSLPITDRKIRFGLVGCGRISKNHIGAIAQHGDRAELVEICDTNPEALQA FT AEAATGARPFSSLSDMLAQGNADALVLATPSGLHPWQAIEVAQAGRHVVSEKPMATRWE FT DGKRMVKACDEAGVRLFVVKQNRRNATLQLVKKAIEQGRFGRIYMVTVNVFWTRPQEYY FT DAARWRGKWEWDGGAFMNQASHYVDLLDWLVGPVESVYAYTATLARRIEAEDTGVAALR FT WRHGAMGSINVTMLTYPQNLEGSITILGEKGTVRVGGVAVNRIDEWKFAEPHPDDDKIR FT EANYETTSVYGFGHPLYYDNVINCLRGDCEPETDGREGLQSLALLTAIYRSARDGVRIP FT LPLD" FT misc_feature complement(170012..170359) FT /note="HMMPfam hit to PF02894, Oxidoreductase family, FT C-terminal alpha/beta domain, score 1.2e-28" FT misc_feature complement(170393..170752) FT /note="HMMPfam hit to PF01408, Oxidoreductase family, FT NAD-binding Rossmann fold, score 7.9e-46" FT CDS 170958..171920 FT /transl_table=11 FT /gene="rfaC" FT /gene_synonym="waaC" FT /locus_tag="BPP0156" FT /product="probable heptosyltransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0094" FT /db_xref="GOA:Q7W235" FT /db_xref="InterPro:IPR011908" FT /db_xref="UniProtKB/TrEMBL:Q7W235" FT /protein_id="CAE39897.1" FT /translation="MVHMLPAISDIARYVPDTQIDWVAEEAFADIPRWHPAVNEVIKVA FT HRRWRKAWWSEPVRQERRALAERLRSVSYDVVLDMQGLLKSAWLVRQTRGVRHGLDWRS FT AREPLASLFYNVRHRVEFWQPAVVRQRKLAALTFGYNYAGSPDFGLQAFGRAAQADDAP FT ADPGRRMLHLAADRGYAVIMPSASRDDKLWPEDDWRAVFRRLQDAGCALRLLAGNEQEA FT ERARVLVAGMEGVEVLPRMDLTSVAQVLAGARLMVGLDSGLTHLSAALGRPTIGIYRAS FT TPVRTPLVGPSYTASLGDRGASPSREAVLASVEQALAAA" FT misc_feature 171141..171899 FT /note="HMMPfam hit to PF01075, Glycosyltransferase family 9 FT (heptosyltransferase), score 5.9e-110" FT CDS 171922..173214 FT /transl_table=11 FT /gene="kdtA" FT /gene_synonym="waaA" FT /locus_tag="BPP0157" FT /product="3-deoxy-D-manno-octulosonic-acid transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0095" FT /db_xref="GOA:Q7W234" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7W234" FT /protein_id="CAE39898.1" FT /translation="MGRGVYTLALRGLAPLIWLWMWRRARRAGGQWELFAPARFGRAGA FT RAPAPLAAPVWVHAVSLGETRAAQPLVQALLERGLPVLLTHTTATGRAEGERLFGAAIG FT RGQLQQAWLPYDFPGATRRFLARHAPRCGLLIEREVWPNLLAAARAQGVPMALVSARFS FT ASSLRQAGWLGQALREALAGLGRVLAQTDEDGARLCQAGANAYTVTGSLKFDVALPEAQ FT LRVGHAWAGATGRPVIALASTREGEDAMFIEAIGAVQAHRAATPRPLILLIPRHPQRFD FT EAAAQLQAAGLAYARRSAGSGEPGPHIDVLLGDTLGEMPFYYAAADVAIVGGSFARLGG FT QNLIEACAAGTPVIVGPHTFNFKDAARDAIAAGAALRAPDARTALDWALQLLAEPARRQ FT AMSEAARAWTAAHAGATRRTLDALEDWLAPR" FT CDS complement(173240..174076) FT /transl_table=11 FT /locus_tag="BPP0158" FT /product="putative exported protein" FT /note="Similar to Bordetella bronchiseptica putative FT membrane protein Bblps1.18C SWALL:O87991 (EMBL:AJ007747) FT (340 aa) fasta scores: E(): 1.9e-06, 23.59% id in 195 aa" FT /db_xref="UniProtKB/TrEMBL:Q7W233" FT /protein_id="CAE39899.1" FT /translation="MKIKQLVTQTLLVCTVSAVTSTAVIYLSKKIDARRQTAAQIVDAR FT ERALLHEFASKVTNFEEFRFGYGPGRLSSPCLDKAVEQIRDAGGDVRGAFAECKSSFAA FT KLPVARKGMSEGDLLAAFIAVVVNRLAPYGSSTASTPAEILAAKTLNCSQHSIMTAALI FT ARYVPDAEVIEKVGLDGGHIGNHALVYYQSKTARMVLDGTSAMITFASIDDILAGKLVS FT TYDIYDFFQSTDESLEIFRRNVRGAYRLGAVRPEHVIYRESVPLMAKPAPLQANPS" FT misc_feature complement(174008..174076) FT /note="Signal peptide predicted for BPP0158 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.958) with cleavage site FT probability 0.510 between residues 23 and 24" FT CDS complement(174247..175230) FT /pseudo FT /transl_table=11 FT /gene="baf" FT /locus_tag="BPP0159" FT /product="Bvg accessory factor (pseudogene)" FT /note="ortholog of Bordetella pertussis (BX470248) BP0097" FT /note="Pseudogene. The stop codon of this CDS, as predicted FT in pertussis and bronchiseptica, has been replaced with TGC FT (cysteine). Hence the amino acid sequence of this CDS has FT been extended and fused to the downstream CDS. Similar to FT Bordetella pertussis bvg accessory factor Baf FT SWALL:BAF_BORPE (SWALL:Q45338) (267 aa) fasta scores: E(): FT 9e-98, 97.75% id in 267 aa" FT /db_xref="PSEUDO:CAE39900.1" FT misc_feature complement(174328..174393) FT /note="1 probable transmembrane helix predicted for BPP0159 FT by TMHMM2.0 at aa 279-301" FT variation complement(174427..174429) FT /note="TGC in parapertussis; TGA stop codon in pertussis FT and bronchiseptica" FT misc_feature complement(174622..175227) FT /note="HMMPfam hit to PF03309, Bordetella pertussis Bvg FT accessory factor family, score 3.6e-82" FT CDS complement(175227..176093) FT /transl_table=11 FT /gene="birA" FT /locus_tag="BPP0160" FT /product="putative biotin protein ligase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0098" FT /db_xref="GOA:Q7W232" FT /db_xref="HSSP:1BIA" FT /db_xref="InterPro:IPR004408" FT /db_xref="UniProtKB/TrEMBL:Q7W232" FT /protein_id="CAE39901.1" FT /translation="MGAITIAPMSAEVRSLSLPEPAALARAIAARLPAFRDISWVGSTG FT STNADLLARARAGGGARPCLLGAHLQESGRGRAGRPWQNRVGAALMFSCAFDVDLPPSQ FT LPALSPLAGMAACEALRQLVGQPAGLLVKWPNDVQWHDAKLAGVLVESVRNPAGTGHAV FT VIGMGLNLHGGDALSQALQRSVADWNDVAGPGEKGPDAAADLVATVARAWQGAAHTLQQ FT EGFGAFGARFARVDALAGRPVNVIDRGEILYTGAASGVDDHGRLLVQAADGMRPVSVGE FT ISIRPQA" FT misc_feature complement(175239..175382) FT /note="HMMPfam hit to PF02237, Biotin protein ligase C FT terminal domain, score 2.8e-15" FT misc_feature complement(175545..175988) FT /note="HMMPfam hit to PF03099, Biotin/lipoate A/B protein FT ligase family, score 2e-29" FT CDS 176162..177298 FT /transl_table=11 FT /locus_tag="BPP0161" FT /product="putative integral membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0099" FT /db_xref="InterPro:IPR003453" FT /db_xref="UniProtKB/TrEMBL:Q7W231" FT /protein_id="CAE39902.1" FT /translation="MPMPSLPSTAGAATLPLTLDHGVCHVSGDWSMQALAAPGEVERRR FT AALARVDPDQRWDLRGVERLDTIGAHLLWGAWGQQLPERVRWSDGQREVFQTLQRNRGE FT ALPAPAPADRWGWLRAIGDAVFDAGRNGRALIIMFGQLVLDLGAFLRRPSRGPWREISA FT QVYRTGAQALGITALVGFLIGVVLSYLSAQQLQMFGADRFIVRLLGVSIVRELGPVLAA FT ILVAGRSGSAITAQIGVMRVTQELDAMLVMGISHGQRLILPRVIALAITMPLLVVWTDA FT MALLGGMLAAQMQLGVSAQWFLTSLPDAISLTNYWIGMFKGVSFGILIALVACHFGLCI FT QPNTESLGRGTTTSVVTSITGVILVDALYAVIFSSIGI" FT misc_feature 176162..176269 FT /note="Signal peptide predicted for BPP0161 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.737) with cleavage site FT probability 0.723 between residues 36 and 37" FT misc_feature 176543..177283 FT /note="HMMPfam hit to PF02405, Domain of unknown function FT DUF140, score 3.7e-58" FT misc_feature join(176669..176737,176981..177049,177107..177175, FT 177212..177280) FT /note="4 probable transmembrane helices predicted for FT BPP0161 by TMHMM2.0 at aa 170-192, 274-296, 316-338 and FT 351-373" FT CDS 177298..178137 FT /transl_table=11 FT /locus_tag="BPP0162" FT /product="probable ATP-binding component of ABC FT transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP0100" FT /db_xref="GOA:Q7W230" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W230" FT /protein_id="CAE39903.1" FT /translation="MGSVAQQNLFSATDLAVAPVIAVRGLRTAFGDHVVHDNLDLSVYP FT GEILALVGGSGTGKTVLLRQIIGLERPAAGTIEVLGRRVQELEPAERRRLSHRWGMLFQ FT AGSLFSSLSVFDNVALPLRELRTVPEDLVCDVVMCRLAMVGLTSKDADKRPADLSGGMV FT KRVALARALSLDPELLFLDEPTAGLDPLRSDEFVDLVRSLHRQLGFTVVMVTHDLDTLL FT ALATRVAVLADKRVIVCDTVREVLKVDHPFIRSFFLGERGRRALGDLAPKETGNGKP" FT misc_feature 177433..177999 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 2.6e-57" FT misc_feature 177454..177477 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 177514..177567 FT /note="PS00216 Sugar transport proteins signature 1." FT CDS 178124..179071 FT /transl_table=11 FT /locus_tag="BPP0163" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0101" FT /db_xref="InterPro:IPR003399" FT /db_xref="UniProtKB/TrEMBL:Q7W229" FT /protein_id="CAE39904.1" FT /translation="MENRSHALLAGLFTLALLVAAALVAIWVGRDRAALKPYVIVSATS FT VSGLSAQSTVRYQGVPVGKVQSLGFNPDKPAQVRISIGVAPDTPITESTWAELGVQGVT FT GLGNIELRDDGTSTRRLASSAAMPATIPLRPGFFQRFEQRGGEILHNVEQVSARLERLL FT SNENVQATTATLQNIAAITTDLRQAATELRPALAQVPPLVDSLQAMSRNTGQAAQEIAG FT LAQAARQALARLDAPDGPLAMATRSMRDIAWAAARLDAQTLPAVSGMASSIDSAARSAT FT TTLRRVGDTPQSLLFGPPPTVPGPGEPGFAGFGR" FT misc_feature 178124..178198 FT /note="Signal peptide predicted for BPP0163 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.352 between residues 25 and 26" FT misc_feature 178151..178555 FT /note="HMMPfam hit to PF02470, mce related protein, score FT 0.00031" FT CDS 179072..179677 FT /transl_table=11 FT /locus_tag="BPP0164" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0101A" FT /db_xref="InterPro:IPR005586" FT /db_xref="UniProtKB/TrEMBL:Q7W228" FT /protein_id="CAE39905.1" FT /translation="MDMKKAIIVLSALLLAGCGAGRMAAPPALFDLGADVAATPALPAR FT QPIVLAFEAVPYLSDTGVIWRVGDSASPHAYARSRWASAPAELVRQRLVERLSHQGPVL FT GAGMGAGLAQVQVTLTRFEQVFAADGQASVGHVAMQAVLLQDRQVVGQVRIAREAPAAT FT QDAAGGVQALRQATDAAADELAGWLAGRVAAAGVRAGS" FT misc_feature 179072..179143 FT /note="Signal peptide predicted for BPP0164 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.988 between residues 24 and 25" FT misc_feature 179093..179125 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 179707..180360 FT /transl_table=11 FT /locus_tag="BPP0165" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0101B" FT /db_xref="UniProtKB/TrEMBL:Q7W227" FT /protein_id="CAE39906.1" FT /translation="MSARTETQVFTGAAGNIDCAIDWPAHAPRGWALVLHPHSLQGGAR FT DNKVVTTVARACVQHGLAAVRPNFRGVGESAGEFDKSIGETEDMLALVAQVRERYPEFA FT ASPWVLGGFSFGTAVAAQTYAALAAAGDPSLPRALMLMGPAVNRFERSATEVPADTLLV FT HGEADDVVPLAEALEWARPRSLPVVVVPGASHFFHGKLLVLRQLVQDRLRIALD" FT CDS 180493..181749 FT /transl_table=11 FT /locus_tag="BPP0166" FT /product="putative penicillin-binding protein precursor" FT /EC_number="3.4.16.4" FT /note="ortholog of Bordetella pertussis (BX470248) BP0102" FT /db_xref="GOA:Q7W226" FT /db_xref="HSSP:1HD8" FT /db_xref="InterPro:IPR018044" FT /db_xref="UniProtKB/TrEMBL:Q7W226" FT /protein_id="CAE39907.1" FT /translation="MKTLPDTAIAPVVLSRRVLASAVLAAMLAAAAPAGAQQQAAPATP FT VAAAAPAAGGAVGAVGDLAAVPVPTIAAKAWITVDVNSGQVLAASNADMKVEPASLTKI FT MTAYVVFNALQEKRLTLEQQVPVSEHAWRTGGSRMFIEPRKPVTVDELNQGMIVQSGND FT ASVALAEAVGGSESAFAALMNQEAQRLGMRNTHFMNSTGLPDPQHVTTARDLATLAVHL FT LSDYPDYYHYYKQKSYTYNKITQPNRNRLLWADPSVDGMKTGHTDSAGYCLVSTAMRGD FT RRILTVLVGADSEATRAEESLKLLNWSFQNFDTVKLYDQSQPGLDARVWEGKVENVKLG FT PPNPVWLAVPRGKAAEIKPVAQRTDPLVAPLTKGQQVGTLQLTLDGKTLRVEPLVVQED FT VERAGFFGRMADTVKRWFQ" FT misc_feature 180493..180600 FT /note="Signal peptide predicted for BPP0166 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.908 between residues 36 and 37" FT misc_feature 180667..181434 FT /note="HMMPfam hit to PF00768, D-alanyl-D-alanine FT carboxypeptidase, score 8.2e-110" FT CDS 181752..182696 FT /transl_table=11 FT /locus_tag="BPP0167" FT /product="probable class IV aminotransferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0103" FT /db_xref="GOA:Q7W225" FT /db_xref="HSSP:1DAA" FT /db_xref="InterPro:IPR000111" FT /db_xref="UniProtKB/TrEMBL:Q7W225" FT /protein_id="CAE39908.1" FT /translation="MKAAPQAARRHRRAAMPAPILSKELPMIPGMPGDSQVYLNGEFTR FT LDEAKISVLDRGFIFGDGIYEVVPVYDGKVFRMTEHLNRLDRSLAALRIAAPMDRAGWE FT SVIAGLIARSAQPTCIIYLQVTRGVCKRDHAFPTEPITPTVFGMAAAFSPPGAAQRTQG FT LSAIAIDDERWLHCEIKSVSLLGNVLAKQQAVDAGVDEVVQFRDGWLTEGSSTNIWMVS FT GGKLLAPPKNNLILEGIRYGLMGELAEAAGLPFEARRISREEVLAADELMLTSATKEVL FT PIVRLDGKAVGAGKPGPVYEQLRAGYDARIAAL" FT misc_feature 181869..182675 FT /note="HMMPfam hit to PF01063, Aminotransferase class IV, FT score 6e-53" FT CDS 182772..183047 FT /transl_table=11 FT /locus_tag="BPP0168" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP0104" FT /db_xref="InterPro:IPR007454" FT /db_xref="UniProtKB/Swiss-Prot:Q7W224" FT /protein_id="CAE39909.1" FT /translation="MHNIPPEESLIEYPSDFPIKVMGKQHPEFAQTLTEVVLQFDPAFD FT PASVEMRPSKGGNYMGLTFTVRATSREQLDSLYRALHGHPMVSIVL" FT CDS 183055..183717 FT /transl_table=11 FT /gene="lipB" FT /locus_tag="BPP0169" FT /product="lipoate-protein ligase B" FT /EC_number="6.-.-.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP0105" FT /db_xref="GOA:Q7W223" FT /db_xref="InterPro:IPR000544" FT /db_xref="UniProtKB/Swiss-Prot:Q7W223" FT /protein_id="CAE39910.1" FT /translation="MIKWLARPADYGSVWDAMKAFTAARGPGTADEIWLCEHAPVYTLG FT QAGRPEHLLNPGLIPVVHCDRGGQVTYHGPGQVLAYTLFDLRRAGLYVREYVDMLEQAT FT LATLRELGLEQACRKPGAPGIYVPQPGGELAKIAALGVKVRNGYAYHGLALNIDMDLSP FT FLGINPCGYEGLRTVDLAACGVRTSVERAGELLAAQLARAHGHAVQQRAAALAGVPG" FT misc_feature 183172..183543 FT /note="HMMPfam hit to PF03099, Biotin/lipoate A/B protein FT ligase family, score 1.5e-31" FT misc_feature 183250..183297 FT /note="PS01313 Lipoate-protein ligase B signature." FT CDS 183779..184780 FT /transl_table=11 FT /gene="lipA" FT /gene_synonym="lip" FT /locus_tag="BPP0170" FT /product="lipoic acid synthetase" FT /note="ortholog of Bordetella pertussis (BX470248) BP0106" FT /db_xref="GOA:Q7W222" FT /db_xref="InterPro:IPR007197" FT /db_xref="UniProtKB/Swiss-Prot:Q7W222" FT /protein_id="CAE39911.1" FT /translation="MSTLVESPVPSNDSQAAAPAAYDPTQKQKSQAKTARIPIKVVAAE FT KLKKPEWIRVRAAAPGSRFYDIKRILREHNLHTVCEEASCPNIGECFGKGTATFMIMGD FT KCTRRCPFCDVGHGRPDPLDTQEPENLARTIAALKLSYVVITSVDRDDLRDGGAAHFVE FT CIAKVREYSPDTRIEVLVPDFRGRLDRALHILNSGPPDVMNHNLETVPRLYKQARPGSD FT YAHSLKLLVEFKKLHPEVPTKSGLMLGLGETDEEILQVMRDMREHNVDMLTIGQYLQPS FT EHHLPVLRYVHPDTFAMFEREAYAMGFTHAAVGAMVRSSYHADQQAHAAGVN" FT misc_feature 183989..184756 FT /note="HMMPfam hit to PF02546, Lipoate synthase, score FT 3e-175" FT CDS complement(184795..185343) FT /transl_table=11 FT /gene="rfbC" FT /gene_synonym="rmlC" FT /locus_tag="BPP0171" FT /product="dTDP-4-dehydrorhamnose 3,5-epimerase" FT /EC_number="5.1.3.13" FT /note="ortholog of Bordetella pertussis (BX470248) BP0107" FT /db_xref="GOA:Q7W221" FT /db_xref="HSSP:1DZR" FT /db_xref="InterPro:IPR014710" FT /db_xref="UniProtKB/TrEMBL:Q7W221" FT /protein_id="CAE39912.1" FT /translation="MKLTPLAIADVVLIEPQVFGDERGCFFESFNQDRLDAQLGRRIRF FT VQDNHSCSRAGVLRGLHYQILHPQAKLVRVVAGEAYDVAVDLRRGSPTFGRWTGAYLSA FT RNRHQLWIPEGFAHGFLALSDDTECLYKATDYYAPEHERCVRWDDPQLKVDWPLQGQAP FT ILSVKDRQGVALARADTYA" FT misc_feature complement(184810..185337) FT /note="HMMPfam hit to PF00908, dTDP-4-dehydrorhamnose FT 3,5-epimerase, score 2.6e-106" FT CDS complement(185401..186357) FT /transl_table=11 FT /gene="rfbD" FT /gene_synonym="rmlD" FT /locus_tag="BPP0172" FT /product="dTDP-4-dehydrorhamnose reductase" FT /EC_number="1.1.1.133" FT /note="ortholog of Bordetella pertussis (BX470248) BP0108" FT /db_xref="GOA:Q7W220" FT /db_xref="HSSP:1KBZ" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7W220" FT /protein_id="CAE39913.1" FT /translation="MGGGHRQRRIPPLARYALRHMNILLLGRTGQIGDALLAHPLAWAR FT LAALERRQADLRDLGRLAAVLDAYAPRILINAAAYTEVDRAEAEPELALRINAQAVAVM FT ADYARRNNALLVHYSTDYVFDGKRARAYRETDAAHPLNAYGRSKLAGEQAIAASGCPHL FT ILRTSWVYASHGANFVKTILRLARTRAELSVVADQHGAPTWAGRIAAVTWQAIDAHRRR FT RLPDGLWHLSAGGHVSWHGLACHIVARARRAGLALSLDPAHIRPVTTAQYPLPAPRPAN FT SRLDCGALRDALEPELPDWQVDLDAVVDALAARAHTL" FT CDS complement(186294..187355) FT /transl_table=11 FT /gene="rfbB" FT /gene_synonym="rmlB" FT /locus_tag="BPP0173" FT /product="dTDP-glucose 4,6-dehydratase" FT /EC_number="4.2.1.46" FT /note="ortholog of Bordetella pertussis (BX470248) BP0109" FT /db_xref="GOA:Q7W219" FT /db_xref="HSSP:1KEW" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7W219" FT /protein_id="CAE39914.1" FT /translation="MSILVTGGAGFIGSNFVLGWLASGDEPVINLDLLTYAGNAANLAA FT LRDDPRHLLVHGDIADAPLVRRLLREHRPRAIVNFAAESHVDRAIRAPDAFVQTNVVGT FT FALLEAARAYCAEQDDAAAAAFRFLHVSTDEVYGSLAPQAAPFTETHPYQPNNPYSASK FT AASDHMVRSYRHTYGLPAITTHCCNNYGPRQFPEKLIPLVIHHALAGRALPLYGDGMHV FT RDWLYVADHCAALECVLRDGQPGRTYNIGAHCERTNLEVVHAVCALLDQWRARPDGQPH FT ASGIAFIPERPGHDRRYAIDAGKIQRELGWRAATSFEAGLRETVRWYLNHPQWVADIAS FT GAYRHWLDTHYDT" FT misc_feature complement(186360..187349) FT /note="HMMPfam hit to PF01370, NAD dependent FT epimerase/dehydratase family, score 5.3e-160" FT misc_feature complement(186834..186920) FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature." FT CDS complement(187391..187951) FT /transl_table=11 FT /locus_tag="BPP0174" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3090" FT /db_xref="GOA:Q7W218" FT /db_xref="InterPro:IPR002779" FT /db_xref="UniProtKB/TrEMBL:Q7W218" FT /protein_id="CAE39915.1" FT /translation="MANRLSVIATRTGDDGSTGLGDGSRVGKDTARIAALGDVDELNSV FT LGLLRAETLPAEMDADLSTIQHDLFDMGAELCIPGHIALADEQVAHLDARLSHYNAGLA FT PLREFILPGGSRAAALCHLGRTVARRAERSVVALARAEVVNAPVRQYLNRLSDLLFVLA FT RHVNQAQGARDVYWASRHARPAD" FT misc_feature complement(187448..187930) FT /note="HMMPfam hit to PF01923, Protein of unknown function FT DUF80, score 5.5e-63" FT CDS 188374..188679 FT /transl_table=11 FT /locus_tag="BPP0175" FT /product="putative exported protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3088" FT /db_xref="UniProtKB/TrEMBL:Q7W217" FT /protein_id="CAE39916.1" FT /translation="MAFSRKYSSRMAVATAMAVVSLATPLAFAQQADATGEVRRVDAAA FT DKVSIKHDAISALDLPAMTLVCQIDPALLAGIKPGDKVRFTATRKDGRYVVTAISK" FT misc_feature 188374..188460 FT /note="Signal peptide predicted for BPP0175 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.982 between residues 29 and 30" FT CDS complement(188722..190056) FT /transl_table=11 FT /gene="hslU" FT /gene_synonym="htpI" FT /locus_tag="BPP0176" FT /product="ATP-dependent Hsl protease ATP-binding subunit" FT /note="ortholog of Bordetella pertussis (BX470248) BP3087" FT /db_xref="GOA:Q7W216" FT /db_xref="HSSP:1G41" FT /db_xref="InterPro:IPR004491" FT /db_xref="UniProtKB/Swiss-Prot:Q7W216" FT /protein_id="CAE39917.1" FT /translation="MSANHMTPDEIVAELDKFIIGQNRAKRAVAVALRNRWRRQQVAEP FT LRHEIHPKNILMIGPTGVGKTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRD FT LTEYSIKQTRELEMRRVRSHAEDAAEDRILDALVPPPRGASGEPERGEDNSARQTFRKR FT LREGKIDDLEIEIEIAQPMPQMDVMTPPGMEEMAEQLRGMFAGLARDKKKSKKIKVREA FT FKLIVEEEAAKRVNEDDLRAAAITNVEQNGIVFLDEIDKIAARQETGGADVSRQGVQRD FT LLPLVEGTTVNTRYGMVRTDHILFIASGAFHLARPSDLIPELQGRFPIRVELDSLSAED FT FVSILSETDASLIKQYTALLGTEDVKLEFTDDGIRRLAELAFSVNERTENIGARRLYTV FT MEKLLEELSFDASANSGEVITIDAAYVDLQLAETAGSQDLARYVL" FT misc_feature complement(188896..189897) FT /note="HMMPfam hit to PF00004, ATPase family associated FT with various cellular activities (AAA), score 6.1e-06" FT misc_feature complement(189859..189882) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(190078..190617) FT /transl_table=11 FT /gene="hslV" FT /gene_synonym="htpO" FT /locus_tag="BPP0177" FT /product="ATP-dependent protease heat shock protein" FT /EC_number="3.4.25.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3086" FT /db_xref="GOA:Q7W215" FT /db_xref="InterPro:IPR001353" FT /db_xref="UniProtKB/Swiss-Prot:Q7W215" FT /protein_id="CAE39918.1" FT /translation="MEQFHATTIVCVRRGNHVALGGDGQVTLGNIVIKGTARKIRRLYH FT DKVLAGFAGATADAFTLQERFEAKLEKHQGHLMRAAVELTRDWRTDRVLRRLEAMLIVA FT DTEHTLVLTGNGDVLEPEHGLAAIGSGGAYAQSAALALLRNTELPPEAIVKQSLEIAGD FT LCIYTNQNHVIETLGA" FT CDS complement(190765..191229) FT /transl_table=11 FT /gene="dksA" FT /locus_tag="BPP0178" FT /product="putative dnaK suppressor protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3085" FT /db_xref="GOA:Q7W214" FT /db_xref="InterPro:IPR020458" FT /db_xref="UniProtKB/TrEMBL:Q7W214" FT /protein_id="CAE39919.1" FT /translation="MATKAATKKSSKSTSDTAIDLPSEQELLAMPEADYMNDRQLAFFK FT ERLKQLEQDILANAGETTEHLRETQFVPDPADRATIEEEHALELRTRDRERKLLKKVQQ FT AIARIDSGEYGWCEETGEPIGVPRLLARPTATLSLEAQERREMRQKLYGD" FT misc_feature complement(190783..190995) FT /note="HMMPfam hit to PF01258, Prokaryotic dksA/traR FT C4-type zinc finger, score 5.4e-09" FT CDS complement(191373..192482) FT /transl_table=11 FT /locus_tag="BPP0179" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3084" FT /db_xref="InterPro:IPR011629" FT /db_xref="UniProtKB/TrEMBL:Q7W213" FT /protein_id="CAE39920.1" FT /translation="MNTARSLDKMVPVTILTGFLGAGKTTLLKRILTEYHGRRVAVIEN FT EFGPESIDNDLLVQDRDEEIIELSNGCVCCTVRGDLMRTLSDLRARREAGELSFERVII FT ETTGMANPGPVCQTFFMDDDIAEYYRLDAVVTVVDAKHGMATLDAQDEAQKQVGFADRI FT LVSKKDLVNDVDYAALHQRLVRINPRAPITPVHFGEADLKSIIDISGFNLNSILDIDPA FT FLADEHPDAAHDHHDHDHGHSHEHDHDHEGECGAHCNHHHHHHHAHHDDEIGAFVFRSN FT KPFDPARLEEFLGGVVQVYGPDLLRYKGILYMKGINRRMLFQGVHMMMGAEPGKAWTAA FT EKPSTKMVFIGRKLPQEIFTRGLEQCLVG" FT misc_feature complement(191430..192359) FT /note="HMMPfam hit to PF02492, Cobalamin synthesis FT protein/P47K, score 2.2e-70" FT misc_feature complement(192408..192431) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(192759..193262) FT /transl_table=11 FT /locus_tag="BPP0180" FT /product="putative regulatory protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3083" FT /db_xref="GOA:Q7W212" FT /db_xref="InterPro:IPR002481" FT /db_xref="UniProtKB/TrEMBL:Q7W212" FT /protein_id="CAE39921.1" FT /translation="MSASRPTRADTVGAQLDLAESLCTQRGRRLTPIRRKVLELLLVHG FT RSLKAYELLEAMRAEHPGAAPPTVYRALDFLMDEGLIHRLDAVNAWSACHDAAGEPHDL FT LVVCTGCGAVAEISDPDMSRQLAERVARTGFALATHETEIRALCPQCQQNRPAQAHGHT FT HSHH" FT misc_feature complement(192828..193190) FT /note="HMMPfam hit to PF01475, Ferric uptake regulator FT family, score 1.6e-11" FT CDS 193592..194314 FT /transl_table=11 FT /locus_tag="BPP0181" FT /product="putative transport protein ATP-binding" FT /note="ortholog of Bordetella pertussis (BX470248) BP3082" FT /db_xref="GOA:Q7W211" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:Q7W211" FT /protein_id="CAE39922.1" FT /translation="MAMTAPCIALRGAAFGWHGRPAVHGLTGEFSRGSMTAIVGPNGAG FT KSTLLKGLAGVLRPLAGALECEADLRRRLAWLPQASELERGFPITVADMVALGAWGRVG FT AWRRFDAAETARVHAALRRVGLQDLAGQSLGALSGGQMQRALFARLLLQDAPLLLLDEP FT FSAIDAATTDVLLDLLREQHAEGRTVIAVLHDLDMVRRHFPRTLLLAGRQVAWGETGQA FT LGDANLARARGLAMREAA" FT misc_feature 193688..194227 FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 5.7e-46" FT misc_feature 193709..193732 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT misc_feature 194000..194044 FT /note="PS00211 ABC transporters family signature." FT CDS 194311..195207 FT /transl_table=11 FT /locus_tag="BPP0182" FT /product="putative ABC transporter permease protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3081" FT /db_xref="GOA:Q7W210" FT /db_xref="InterPro:IPR001626" FT /db_xref="UniProtKB/TrEMBL:Q7W210" FT /protein_id="CAE39923.1" FT /translation="MTLAEWLAGPFADYGFMRRALAGAVALSAGAAPLGVFLVLRRMSL FT MGDAMAHAILPGVAAGYLLSGLSLGAMMIGGLVTGLAVALLAGLVARLTPLREDASFAS FT FYLISLGLGVLLVSLRGSNMDLLHVLFGTVLGLDDAALLLVTAVASATLCILALAYRLL FT VAECLDPGFLRAAGGRGAWVHMLFMGLVVLNLVAGFQVLGTLMVVGLMMLPAAAARFWA FT GSAPGQIALAAVSACAASAVGLLVSFHANVPASPAIILAAGAFYLFSVACGPHGGLLVA FT ARRARRARPWQPEGDLP" FT misc_feature 194347..195129 FT /note="HMMPfam hit to PF00950, ABC 3 transport family, FT score 5.3e-43" FT misc_feature join(194371..194430,194512..194580,194614..194673, FT 194731..194799,194833..194901,194911..194979, FT 194998..195066,195079..195147) FT /note="8 probable transmembrane helices predicted for FT BPP0182 by TMHMM2.0 at aa 21-40, 68-90, 102-121, 141-163, FT 175-197, 201-223, 230-252 and 257-279" FT CDS 195204..196133 FT /transl_table=11 FT /locus_tag="BPP0183" FT /product="putative periplasmic solute binding protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3080" FT /db_xref="GOA:Q7W209" FT /db_xref="HSSP:1K0F" FT /db_xref="InterPro:IPR006127" FT /db_xref="UniProtKB/TrEMBL:Q7W209" FT /protein_id="CAE39924.1" FT /translation="MKSRILALAAAVLLAPLVAAAQPLQVVASFSILADIAAQVGGPDV FT AVQSLVGPDGDAHEYEPTPADARKLAAAQVLVVNGLDFEAWLPRLQKAAGFAGRTVVAS FT EGIEPRRLDDAHEEHGDHDHDHDHGHHHHGDLDPHAWQDLANGATYARNIARAFAEADP FT AHAQAYRQRADAYVARIEALDQRVRQLFEAIEPARRKVVSSHDAFGYFGQAYGVRFVAL FT AGVSTDAEPSAADMARIIEQVRRERVPAVFVENIANPRLAQQLVRETQARLGGTLYSDA FT LAQPGKPAGTYLGMFEWNAQQLAAALRP" FT misc_feature 195204..195266 FT /note="Signal peptide predicted for BPP0183 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.799 between residues 21 and 22" FT misc_feature 195216..196127 FT /note="HMMPfam hit to PF01297, Periplasmic solute binding FT protein family, score 2.1e-92" FT CDS 196181..196762 FT /transl_table=11 FT /locus_tag="BPP0184" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3079" FT /db_xref="InterPro:IPR010412" FT /db_xref="UniProtKB/TrEMBL:Q7W208" FT /protein_id="CAE39925.1" FT /translation="MWIDARAVVEFDAAGRIAAVRQVWRFDDMFGAYATQGLSSKPGGG FT LPPDVLRTMAEDWMKALGEPVSHYFTRVTQGARTLPFGPPRDAAVSFEDGRLTLAFTLP FT LAAPAPARGATAVDIYDPTYFVAYAFDEAGATALHGAPAGCSQAYRPPRPLDWATMQQL FT AAIPADPEALPEELFAITKGLTHRIEVTCP" FT CDS 196753..197721 FT /transl_table=11 FT /locus_tag="BPP0185" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3078" FT /db_xref="GOA:Q7W207" FT /db_xref="InterPro:IPR011541" FT /db_xref="UniProtKB/TrEMBL:Q7W207" FT /protein_id="CAE39926.1" FT /translation="MSVVRAGALVVLVLGCLAALPAAAQGGHPFGVPEATGAPGWLAGW FT FGQVAMWQAHFYRQLTGAVRAWQAEGGAAWMLIGLSFAYGVFHALGPGHGKAVIASYVL FT ANRQTARNGAWLALLSALAQALVAVALVTVLAVALGATAAAMNRATQWLETAAYAVVSL FT LGAWLVWQKALRPWWGSKGGHGHDHHAHHHAPGCACGHAHAPSARQAAGPLSARKAWAA FT ILAVGLRPCSGALIVLVFALAQGFFLAGVVATLAMGLGTGLTVAMLVALAAGARDAATR FT LGARLSTRRAAMLRQAIEALAAVAVLLLGLSLLGGQLVALR" FT misc_feature 196753..196824 FT /note="Signal peptide predicted for BPP0185 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.993 between residues 24 and 25" FT misc_feature join(196771..196824,196966..197034,197095..197163, FT 197206..197262,197428..197496,197509..197577, FT 197644..197712) FT /note="7 probable transmembrane helices predicted for FT BPP0185 by TMHMM2.0 at aa 7-24, 72-94, 115-137, 152-170, FT 226-248, 253-275 and 298-320" FT CDS 197770..199905 FT /transl_table=11 FT /locus_tag="BPP0186" FT /product="putative outer membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3077" FT /db_xref="GOA:Q7W206" FT /db_xref="InterPro:IPR012910" FT /db_xref="UniProtKB/TrEMBL:Q7W206" FT /protein_id="CAE39927.1" FT /translation="MVCYIVSFNENGTSFCREGNMRFERHPLSAALALALAWQGAHAQA FT SADGTPEAATLAPITVSASPLAGDLDSMTAPAAVLEGDQLLLRRQGTLGDTLDGLPGVH FT ADTFGGGASRPVIRGQTAPRVKVLSDGSELMDASAISPDHAVTTEPLLADKIEVLRGPA FT TLLYGGGAIGGVVNVLDRKIPTAVPQQGIEAEAELRGATGTKERAGAIGITAGSGNFAV FT RVEGLKRRSSDYRVPDWPDGKLAGSYSESGQGTVGMSWITPRGYVGVAFTHLESKYGLP FT GHNHEYEGCHPHGSHLHCGGHDDHGHDEHEEGEAEHDHGHEHGAGDVPYVKLRSNRTDL FT RAEYTDPFAGFEKIRFRGGLTDYRHDEIEGGQLGTRFQNRGYDARLELTHRPLYGWHGV FT VGVQTSYSDFRATGEEAFLPRSKTRAHGLFLLEEYRWADWRVELGARQDWQRVSPQGGA FT PASRTAGTSLSAAAIWDFAPQYSLALSVSRSQRLPSAQELYADGVHLATNTYEIGDPGL FT DRETSRNVDLTLRKHSGDTTFSVSAFHNRVKNYIYANTLDRYEDFRLIEYTQRDAEFTG FT VEGEIRHRFGKVFSAAVFGDYVRGRLTGGGGNLPRIPAARLGVRADAQWQNWAGGVEYF FT HVYRQDDIAAYESSTPGYDMVNATIRYRGKLDRTAYEIYLRGNNLLNKLAFNHASFIST FT VAPLPGRSVLLGVRLTY" FT misc_feature 197770..197898 FT /note="Signal peptide predicted for BPP0186 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.668) with cleavage site FT probability 0.618 between residues 43 and 44" FT CDS complement(199918..200898) FT /transl_table=11 FT /locus_tag="BPP0187" FT /product="putative integrase/recombinase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3076" FT /db_xref="GOA:Q7W205" FT /db_xref="HSSP:1A0P" FT /db_xref="InterPro:IPR011931" FT /db_xref="UniProtKB/TrEMBL:Q7W205" FT /protein_id="CAE39928.1" FT /translation="MSAAPAASPLPQPMADWLRHLQAHRRYSAHTLDGYTRDLRQLAQL FT AAAAGLPLERVANGHIRHFVARLHAQGLGPRSLARALAAWRGFYQWWAPAAGLPGNPAT FT GVRAPKAPRGLPKALSVEQTQVLLDHAPARLATEPAALRDHAMFELLYSSGLRLAELVS FT LDLRYERTPEYESRSWLNRDDAEVIVVGKGGKRRSVPVGQSALAALDKWLQARPQLAAA FT GAGAQDAAALFVGTRGRRIAPRVVQLQLARLAQAAGLPAHVHPHVLRHNFASHVLQSAQ FT DLRAVQEMLGHANISTTQVYTRLDFQHLARAYDQAHPRADRKTSR" FT misc_feature complement(199966..200544) FT /note="HMMPfam hit to PF00589, Phage integrase family, FT score 2.4e-31" FT misc_feature complement(200605..200865) FT /note="HMMPfam hit to PF02899, Phage integrase, N-terminal FT SAM-like domain, score 4.2e-18" FT CDS complement(200913..201605) FT /transl_table=11 FT /locus_tag="BPP0188" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3075" FT /db_xref="InterPro:IPR007435" FT /db_xref="UniProtKB/TrEMBL:Q7W204" FT /protein_id="CAE39929.1" FT /translation="MTAHTPTEPLNAHAVAEFLQHNPDFFIEHADVFATLQIPNPHGSR FT AISLGERQIQTLRERTRELEWRLSELIRNANSNETIGDHLSQWCCRMLAEADAQHVPGE FT IALGLAEQFDLNHVALRLWRLEGLPESGYGEPVSDDVRTFADSLKTPYCGTDTEFEAVS FT WLDAKPKSLALVALRPDAEAPTFGLLVLGSDDAARFAPDMGTAFLEAIGKLASAALRRL FT GTPPLAAA" FT CDS complement(201632..202543) FT /transl_table=11 FT /gene="dapF" FT /locus_tag="BPP0189" FT /product="diaminopimelate epimerase" FT /EC_number="5.1.1.7" FT /note="ortholog of Bordetella pertussis (BX470248) BP3074" FT /db_xref="GOA:Q7W203" FT /db_xref="HSSP:1GQZ" FT /db_xref="InterPro:IPR018510" FT /db_xref="UniProtKB/TrEMBL:Q7W203" FT /protein_id="CAE39930.1" FT /translation="MGDNPCMMWNFTKMHGAGNDFVVLDGVRQDIAMTPERARALADRH FT FGIGADQILLVEPATQADADFRYRIFNADGSEVEHCGNGARCFVRFVHEQGLSARNPLR FT AEIVTGVIVLDEGEDEQVTVDMGSTRFDPPSLPFDSTGLSAQTQGQDTVWNLEIDAPAG FT LPRSVAISTVAISNPHAVQVVDDVDAAPVGVIGPLVESHPRFARRVNVGFMQVVDRHQI FT RLRVYERGAGETLACGTGACAAVAAGVRRGLLDSPVRVHTRGGMLTVDWNGERLRMTGP FT AISVFSGQVDIDRLVFTSGLHR" FT misc_feature complement(201689..202033) FT /note="HMMPfam hit to PF01678, Diaminopimelate epimerase, FT score 1.9e-37" FT misc_feature complement(202148..202513) FT /note="HMMPfam hit to PF01678, Diaminopimelate epimerase, FT score 7.8e-39" FT misc_feature complement(202286..202330) FT /note="PS01326 Diaminopimelate epimerase signature." FT CDS complement(202586..203476) FT /transl_table=11 FT /locus_tag="BPP0190" FT /product="putative acyltransferase" FT /EC_number="2.3.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3073" FT /db_xref="GOA:Q7W202" FT /db_xref="InterPro:IPR004960" FT /db_xref="UniProtKB/TrEMBL:Q7W202" FT /protein_id="CAE39931.1" FT /translation="MSQFKTRALTAMLRGFARMRPATRQRAGALVGWLSYRLARSRVRI FT VRRNLELCFPGQPEAVRERWTREHFRALGQSIVDRGVLWYGSPEAVREMVTQTGAERIN FT ALIAAGRPVILLAPHFVALDAAATRLTMEVPSGATMYTPQSDPAVDAIVRAGRARFNEV FT FLVSRKDGVRDLVRHLREPRPVYYLPDMDFGRAGSVFVPFFGVPAATLLATAQLARKWN FT AAVLPILDFWDPRTGRYHVEVLPELPDFPGDGSLEDATARLNRELESWVLRCPSQYYWV FT HRRFKTRPLGEPKLY" FT misc_feature complement(202616..203476) FT /note="HMMPfam hit to PF03279, Bacterial lipid A FT biosynthesis acyltransferase, score 2e-59" FT CDS complement(203473..204339) FT /transl_table=11 FT /locus_tag="BPP0191" FT /product="putative acyltransferase" FT /EC_number="2.3.1.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3072" FT /db_xref="GOA:Q7W201" FT /db_xref="InterPro:IPR004960" FT /db_xref="UniProtKB/TrEMBL:Q7W201" FT /protein_id="CAE39932.1" FT /translation="MLVTLLRMAAALPLPFLHAAGRLLGRLAYAFPGKYRDRLRANAAQ FT AGYPQPAFARRAAGEIGAMILEMPKVWFRNEQSLGKVVSDDYAIVEAARAEGRGILFLT FT PHLGCFEITARYLARQMPMTVMFRPPRKAALAPVLETARNTSAVNAVPATMQGVREFVR FT TLRRGESVGMLPDQAPGVGDGVWAPFFGRMAYTMTLPGKLASQTGVAVILTAGERLPGG FT RDWRIHYARVPEPLPDGPQEQAALINSAMESLIRRFPEQYLWGYNRYKVPRGAPPAPDS FT ARQEPEQ" FT misc_feature complement(203527..204339) FT /note="HMMPfam hit to PF03279, Bacterial lipid A FT biosynthesis acyltransferase, score 4.7e-17" FT misc_feature complement(204283..204339) FT /note="Signal peptide predicted for BPP0191 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.922) with cleavage site FT probability 0.902 between residues 19 and 20" FT CDS 204487..205785 FT /transl_table=11 FT /gene="metK" FT /locus_tag="BPP0192" FT /product="S-adenosylmethionine synthetase" FT /EC_number="2.5.1.6" FT /note="ortholog of Bordetella pertussis (BX470248) BP3071" FT /db_xref="GOA:Q7W200" FT /db_xref="InterPro:IPR002133" FT /db_xref="UniProtKB/Swiss-Prot:Q7W200" FT /protein_id="CAE39933.1" FT /translation="MALVRQVRAKSAKASRPDLPYIAIPGCSAPRNLCAGFRPVREEVS FT VANNDFLFTSESVSEGHPDKVADQISDAILDAIFTQDPNARVAAETLCNTGLVVLAGEI FT TTTANVDYIQVARDTIRHIGYDNTEYGIDYKGCAVLVAYDKQSPDIAQGVDRSSEDYLN FT QGAGDQGLMFGYACDETPDLMPAPIWYAHRLVQRQSELRKDGRLPWLRPDAKSQVTFRY FT VDGRPAEVDTVVLSTQHSPEISQASIREAVIEDIIKPSFPEGLITPKTKFLVNPTGRFV FT IGGPQGDCGLTGRKIIVDTYGGACPHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGL FT ARQCQVQVSYAIGVAEPINITVYTEGTGVIPDEQIAKLVREHFDLRPKGIVNMLDLLRP FT IYTKTAAYGHFGRSEPEFSWEATDKAAALKQGA" FT misc_feature 204631..204933 FT /note="HMMPfam hit to PF00438, S-adenosylmethionine FT synthetase, N-terminal domain, score 6.5e-53" FT misc_feature 204970..205326 FT /note="HMMPfam hit to PF02772, S-adenosylmethionine FT synthetase, central domain, score 3.1e-71" FT misc_feature 204979..205011 FT /note="PS00376 S-adenosylmethionine synthetase signature FT 1." FT misc_feature 205330..205779 FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF02773, S-adenosylmethionine FT synthetase, C-terminal domain, score 1e-81" FT misc_feature 205408..205434 FT /note="PS00377 S-adenosylmethionine synthetase signature FT 2." FT CDS 205896..206144 FT /transl_table=11 FT /locus_tag="BPP0193" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3070" FT /db_xref="InterPro:IPR010710" FT /db_xref="UniProtKB/TrEMBL:Q7W1Z9" FT /protein_id="CAE39934.1" FT /translation="MTDASFPVAPRVESDETPDRPARVFTATDSPCVAVCSTLFDDICR FT GCGRTAMEVANWVFMSEEEKREVWVRIQAQGYPRRNN" FT CDS 206224..207264 FT /transl_table=11 FT /locus_tag="BPP0194" FT /product="putative glycosyl transferase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3069" FT /db_xref="GOA:Q7W1Z8" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7W1Z8" FT /protein_id="CAE39935.1" FT /translation="MRIVLVTDAWHPQVNGVVRTWTTMQGLLQDWGHELIVVSPQGSRT FT VPAPSEPDLRLCLQPGRQLRRVLGDVVPDALHIATEGPLGLAARRMALRRGWRFTTSFH FT TMFPDYLQARMGIPAGLPWRYLRWFHRPSQRVLVPTPTVRDIVARRGLGNLQVWSRGVD FT ARRFAPGPRDFLPELPRPLFLCVGRVAREKNLDAFLSLALPGSKVIVGGGPDEARLRRK FT FPAAHFAGPQADDRLVAYYNAADVFVFPSLTDTFGLVMLEAMACGTPVAAFRSEAPLAV FT VQQGATGFLDDDLAQACRAALALDRDEVRAHALTRTWDAVARDLLAAFTPLVEAPLALP FT PAAQRI" FT misc_feature 206722..207171 FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1, score 1.1e-13" FT CDS 207544..208962 FT /transl_table=11 FT /gene="acyH" FT /locus_tag="BPP0195" FT /product="adenosylhomocysteinase" FT /EC_number="3.3.1.1" FT /note="ortholog of Bordetella pertussis (BX470248) BP3068" FT /db_xref="GOA:Q7W1Z7" FT /db_xref="InterPro:IPR020082" FT /db_xref="UniProtKB/Swiss-Prot:Q7W1Z7" FT /protein_id="CAE39936.1" FT /translation="MNAVTDKSVADYIVADMALAGWGRRELAIAETEMPGLMAIRDEYA FT ASQPLKGARIAGSLHMTIQTGVLIETLVALGAEVRWASCNIFSTQDHAAAAIAATGTPV FT FAIKGETLEEYWQYTHKIFEWPEGRHANMILDDGGDATLLLHLGARAEQDISVLAKPGS FT EEERVLFAAIKETLARDPKWYSTRLAQIKGVTEETTTGVHRLYQMSQKGELAFAAINVN FT DSVTKSKFDNLYGCRESLVDGIKRATDVMVAGKIAVVAGYGDVGKGCAQALAALRAQVW FT VTEIDPICALQAAMEGFKVVTMEEAAAHADIFVTATGNYHVITRQHMEAMKDQAIVCNI FT GHFDNEIDVAGLENCQWEEIKPQVDHVIFPDGKRIILLAKGRLVNLGCATGHPSFVMSS FT SFANQTIAQIELFTRNEAYTTGQVYVLPKHLDEKVARLHLKKLGAKLSTLSKQQADYIG FT VPVEGPFKPGHYRY" FT misc_feature 207571..208956 FT /note="HMMPfam hit to PF00670, S-adenosyl-L-homocysteine FT hydrolase, score 0" FT misc_feature 207790..207834 FT /note="PS00738 S-adenosyl-L-homocysteine hydrolase FT signature 1." FT misc_feature 208303..208353 FT /note="PS00739 S-adenosyl-L-homocysteine hydrolase FT signature 2." FT CDS 209033..209368 FT /transl_table=11 FT /locus_tag="BPP0196" FT /product="putative membrane protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3067" FT /db_xref="InterPro:IPR007165" FT /db_xref="UniProtKB/TrEMBL:Q7W1Z6" FT /protein_id="CAE39937.1" FT /translation="MALILVWILNAVALLAVAYLLPGITVASFGSALVAALVLGLLNML FT VKPVLVLLTLPITIVTLGLFLIILNALLFWFAGSVLRGFQVNGFWWAVAGAILYSIIAG FT LLTKLIP" FT misc_feature 209033..209137 FT /note="Signal peptide predicted for BPP0196 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.984) with cleavage site FT probability 0.467 between residues 35 and 36" FT misc_feature join(209042..209110,209129..209197,209207..209275, FT 209294..209362) FT /note="4 probable transmembrane helices predicted for FT BPP0196 by TMHMM2.0 at aa 4-26, 33-55, 59-81 and 88-110" FT CDS 209368..210210 FT /transl_table=11 FT /locus_tag="BPP0197" FT /product="putative methylenetetrahydrofolate reductase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3066" FT /db_xref="GOA:Q7W1Z5" FT /db_xref="HSSP:1B5T" FT /db_xref="InterPro:IPR004620" FT /db_xref="UniProtKB/TrEMBL:Q7W1Z5" FT /protein_id="CAE39938.1" FT /translation="MTQSTAPAFSLEFFPPRDIAAQERLVRAAKQMLAIQPRYVSVTFG FT AGGSTRAGTADTVRTLRNLGCDAAPHLSCIGATRDQLRDILAAYREQGVRRLVALRGDL FT PSGMGGDAGELRYASDLVAFIRQETGDWFHIEVAAYPEMHPQAESPSADLAHFVNKVQA FT GADAAITQYFFNPDAYFDFVERAQAKGVAIPIVPGIMPITNHTQLVRFSEMCGAEIPRW FT IRLRLAEYGDDKASIRAFGLDVVSELCQTLLENGAPGVHFYTLNHAEATLGIWKALNA" FT misc_feature 209368..210204 FT /note="HMMPfam hit to PF02219, Methylenetetrahydrofolate FT reductase, score 1.4e-95" FT CDS complement(210274..211245) FT /transl_table=11 FT /locus_tag="BPP0198" FT /product="putative transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP3064" FT /db_xref="GOA:Q7W1Z4" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W1Z4" FT /protein_id="CAE39939.1" FT /translation="MSASPAPKKSAAALAPERLDWNLLRTFMFVVQERGVGRAATALHL FT SQPAVSQALKRLEQAVGGVLLYRRSGEFRLTNLGEEIYRLAREMYGMVARVEEAATQDE FT DDIAGTLRLLVMSKIQSTAYDDFLAHFHRRYPKVEFYVDVMQSAAILDALAKRVPALGL FT CLCRKAIDTLERRLFLRHRYVVVCGRHHPFFSRRNVRVEDLMDQNFVCFASDQLGDTLS FT PLTIFRDQQGFTGRIVGTSPYLEEIRRMVVAGVGLSFLPEHLIRQDVLAGELRRLPPEH FT NVAEIEVFLAWHRQRKLSAAEQAFLAAFERFLHRTPLEMRAC" FT misc_feature complement(210304..210936) FT /note="HMMPfam hit to PF03466, LysR substrate binding FT domain, score 2e-30" FT misc_feature complement(211006..211185) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family, score 3e-19" FT misc_feature complement(211051..211143) FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature." FT CDS complement(211309..212328) FT /transl_table=11 FT /locus_tag="BPP0199" FT /product="putative aminohydrolase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3063" FT /db_xref="GOA:Q7W1Z3" FT /db_xref="InterPro:IPR000286" FT /db_xref="UniProtKB/TrEMBL:Q7W1Z3" FT /protein_id="CAE39940.1" FT /translation="MKAFYHPDQKLHHPQTYFSRGKMRTPQEVPARLDALAEAARKLKF FT DVREPADAGAGAIGAVHSLDYLRFLREAHARWKQLPDDWGDEVVSNVFVREPNALRGVL FT AQAARYLADGSCPVGPHTWQSAYWAAQCAISGAQTLLDGERHAYALCRPPGHHARRDAA FT GGFCYLNNAAIAAQMLTQRYKRVAILDTDMHHGQGIQEIFYERSDVLYVSIHGDPENFY FT PVVAGFENERGAGEGYGYNVNLPMPHGSPEPVFFDRLQQAQRAIELFQPDALVLSLGFD FT MFEKDPQAMVAVSANGFERLGQAIGAFKLPTLIVQEGGYYIEGLEDNAERFFAGLAKA" FT misc_feature complement(211315..212253) FT /note="HMMPfam hit to PF00850, Histone deacetylase family, FT score 2.3e-54" FT CDS complement(212330..213703) FT /transl_table=11 FT /locus_tag="BPP0200" FT /product="putative integral membrane transport protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3062" FT /db_xref="GOA:Q7W1Z2" FT /db_xref="InterPro:IPR005828" FT /db_xref="UniProtKB/TrEMBL:Q7W1Z2" FT /protein_id="CAE39941.1" FT /translation="MPAIRQSYERNMQGNHQTATHQPVRASIAAFVGTMIEWYDFYIYA FT TAAALVFGKLFFPSVDGFYGTLAAFGTFAVGFLARPLGGAVFGHIGDRIGRKKSLVITL FT LLMGTVTVLIGLLPTYASIGIWAPILLVALRFIQGIAVGGEWGGAVLMAGEHSPDRSKR FT TFFASFAQLGSPAGLILSMLMFKLVTSLDDAAFMDWGWRVPFLFSAALLVVGFAIRLSV FT NESPDFLAEQAEKARLKDAAAKQAADKAPIVEVLRGASGLLALAVGANVLGIAGFYFTN FT TFMLAYTTQYVGLSRGVILDCLLVVSVMQFIITPLSAYIATRIGSRRFLLITSFLSIFT FT PYVMFNMVDQGTLTSLTLGVGLAVVCLGAYYAVIAGYVSDSFPTRIRYTGISMAYQLSG FT AIFGGLTPILGTILAEKFQGHWWPLALLFSGISLLSMISVIFLANHRTDAVTAPLRSA" FT misc_feature complement(212351..213631) FT /note="HMMPfam hit to PF00083, Sugar (and other) FT transporter, score 3.7e-29" FT misc_feature complement(join(212369..212434,212465..212530, FT 212570..212635,212666..212716,212744..212809, FT 212855..212920,213038..213103,213149..213205, FT 213245..213310,213341..213406,213443..213508, FT 213554..213619)) FT /note="12 probable transmembrane helices predicted for FT BPP0200 by TMHMM2.0 at aa 28-50, 65-87, 99-121, 131-153, FT 166-185, 200-222, 261-283, 298-320, 329-346, 356-378, FT 391-413 and 423-445" FT CDS complement(213980..214660) FT /transl_table=11 FT /locus_tag="BPP0201" FT /product="5-formyltetrahydrofolate cyclo-ligase family FT protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3061" FT /db_xref="GOA:Q7W1Z1" FT /db_xref="InterPro:IPR002698" FT /db_xref="UniProtKB/TrEMBL:Q7W1Z1" FT /protein_id="CAE39942.1" FT /translation="MHTQNTAKNTAAALRARLRQSRAELTSSQRSRGALLMRGRLFTWL FT NLACEQAAAQGRPLSRVAAFWPMEDEPDLLPLLEQWVESGIAVCLPAVQERDAPLVFRD FT WTPDSAMRTGAYGIQEPAAGPAVVPDVVLVPTLGYTLDAARLGYGGGYYDRTLAAWQAA FT DASPTTIGIAWSEGLLPDDYQAAAHDIALDAILTPDGWVPGAPLVASGAAAGHRSAGSR FT FLLR" FT misc_feature complement(214067..214636) FT /note="HMMPfam hit to PF01812, 5-formyltetrahydrofolate FT cyclo-ligase family, score 1.6e-26" FT CDS 214673..216799 FT /transl_table=11 FT /locus_tag="BPP0202" FT /product="putative transglycosylase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3060" FT /db_xref="GOA:Q7W1Z0" FT /db_xref="InterPro:IPR008939" FT /db_xref="UniProtKB/TrEMBL:Q7W1Z0" FT /protein_id="CAE39943.1" FT /translation="MKRVLEARRYQKLALRDAADGMRGWLPVLALFTAACAPVDAQQRA FT AASTAPAAVSMQAAPDAEQARRPIAVPPAVLAGLPPAPQTPAQQAVVAAREASQRKQWS FT VLGALAPQARTDPLGMYPEYWLLRYQLWSPPGGRRPDAELQRFLAAHAGSYLEDRLRGD FT WIQAAARAGDFETVRRLGPVKQGNAQIACAGLDARHMTGQRASAAEAVAAFAPGTACWA FT LYDQLVADGVLGWDEIQPQLRDAIEAGKLSDARKLAQYIFEPKDQKSYDQMMKNPMKWL FT VRQDKSPVGRNEKELVTLALARLNKPDVSVADSYLRREWSRHLPRQNLAWVRSQYALVA FT VLNQDPRAYEWYREAGAVRMTEYSHAWKVRSALRQPRIDWKWVIEAIEGMPPSQQAEPV FT WVYWKARGQAALGRDQQASQAYASIADQFNFYGQLAAEELGRRITVPPAPAPVTDAEIA FT EARAHPGLRRAIYLFRLGWRAEAVPEWNFSLRGMSDRQLFAAAELARAEGIYDRVVNTS FT ERTAEQFDFSQRFIAPFEGRVSAKARAIDLDPAWVYGLIRQESRFIMDARSHAGASGLM FT QLMPATAKWVAGKIGMSDFRPGSVNDFDVNTELGTQYLNIVLQGLDGSQVLASAGYNAG FT PGRPRNWRASFGHPVEGAIFAETIPFNETRLYVKNVMSNAVYYAAMFSGQPQSLKERLG FT SIVPPQAALATNQR" FT misc_feature 216278..216637 FT /note="HMMPfam hit to PF01464, Transglycosylase SLT domain, FT score 1.3e-19" FT CDS 216796..217890 FT /transl_table=11 FT /gene="cca" FT /locus_tag="BPP0203" FT /product="tRNA nucleotidyltransferase" FT /EC_number="2.7.7.25" FT /note="ortholog of Bordetella pertussis (BX470248) BP3059" FT /db_xref="GOA:Q7U367" FT /db_xref="InterPro:IPR002646" FT /db_xref="UniProtKB/Swiss-Prot:Q7U367" FT /protein_id="CAE39944.1" FT /translation="MSRTDDPGVAGLQVYIVGGAVRDGLLGLPAGDRDWVVVGATPEDM FT ARRGFIPVGGDFPVFLHPRTKEEYALARTERKSGRGYKGFTFYTGADVTLEQDLQRRDL FT TVNAIARTPQGELVDPLDGVADVRARVLRHVGEAFAEDPVRILRLGRFAARFGDFSIAP FT ETMQLCRRMVEAGEADALVPERVWKEVSRGLMAQAPSRMLDVLARAGALARVMPELHDD FT AAVRAEIDRAAAAGLPLAGRYALLCRHTPERDALGRRLRAPVECMDQARLLPLAVDALA FT ASASTAAQLDLIERCDALRKPERFDALLQAAAIVAPVDLSAWRARVQAVRAIDAGAIAR FT QCAGDPARIKPALRQARLQALGGA" FT misc_feature 217000..217470 FT /note="HMMPfam hit to PF01743, Poly A polymerase family, FT score 7.9e-34" FT CDS complement(217905..219164) FT /transl_table=11 FT /locus_tag="BPP0204" FT /product="conserved hypothetical protein" FT /note="ortholog of Bordetella pertussis (BX470248) BP3058" FT /db_xref="InterPro:IPR003788" FT /db_xref="UniProtKB/TrEMBL:Q7W1Y9" FT /protein_id="CAE39945.1" FT /translation="MRRGPARAAALHRAFSLHGKIAAMQRPASSSLPPLDPAASAHSAS FT VARHLRAAIAAAGGWLPFSQWMSAALYAPGLGYYTAGATKLASPADAQGPALPAGDFVT FT APELTPLFAATVARQIAQVLRATDTASVLEFGAGTGALAEGVLRALAGLDCPARYLIVE FT VSADLRQRQQSRLAPFGDRVQWLDQLPDAFAGCVLGNEVLDAMPATLFRWSETGVVQER FT GVTVDANGEFAWQDRDADAPLAQAVAQRMPPLPGYVSEINLQAEAWVRSMGLWLQRGAA FT LLLDYGFPRSEYYHPQRAGGTLMCHLRHHAHADPFAAPGLQDITSHVDFTAMADAALAG FT GLQVLGYLSQARFLVNAGLLDALSQLDPADARAYAQAVAPVQKLLSEAEMGELFKVLAV FT GRDMPEPLLGFARGDRRGTL" FT misc_feature complement(217962..218990) FT /note="HMMPfam hit to PF02636, Uncharacterized ACR, FT COG1565, score 7.7e-33" FT CDS complement(219184..220932) FT /transl_table=11 FT /locus_tag="BPP0205" FT /product="putative ATP-dependent RNA helicase" FT /note="ortholog of Bordetella pertussis (BX470248) BP3057" FT /db_xref="GOA:Q7W1Y8" FT /db_xref="HSSP:1HV8" FT /db_xref="InterPro:IPR014001" FT /db_xref="UniProtKB/TrEMBL:Q7W1Y8" FT /protein_id="CAE39946.1" FT /translation="MIRSARCSINRCPDRHLFPCSAWRMHMRRYMRQGKAMSFEDLGLA FT PTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPALNRIAHQPG FT NKGVGVQVLVLTPTRELALQVADATASYGRNLPGLRTATVVGGMPYGAQLKALSRRVDV FT LVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPKERQTLLFS FT ATLDGSVARLAERMMREPQRIEIAGHRQKHANITQSLLYADDAAHKMRLLDHVLRDARL FT DQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGQLQRGQLRVLVATDV FT AARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGQAFTLATHAERHKVRRIEHY FT IGQSINAEVIAGLEPQRTPRPNTGGPRRGGKPMGGKRPGGYGAPREFGDRPQRPYGDRP FT QRDFGDRPQRDASDRPQRSFGDRPQRPYGDRPQRDFGDRPQRPYGDRPQRDFGDRPQRS FT FGDRPQRDIGDRPQRDFGDRPQRSFGDRPQREGGWHGAPREGRSFDKRPGGPAKRFAKP FT AAPRRG" FT misc_feature complement(219805..220020) FT /note="HMMPfam hit to PF00271, Helicase conserved FT C-terminal domain, score 1.8e-30" FT misc_feature complement(220159..220785) FT /note="HMMPfam hit to PF00270, DEAD/DEAH box helicase, FT score 1.2e-76" FT misc_feature complement(220342..220368) FT /note="PS00039 DEAD-box subfamily ATP-dependent helicases FT signature." FT CDS complement(221099..221851) FT /transl_table=11 FT /gene="ung" FT /locus_tag="BPP0206" FT /product="uracil-DNA glycosylase" FT /EC_number="3.2.2.-" FT /note="ortholog of Bordetella pertussis (BX470248) BP3056" FT /db_xref="GOA:Q7W1Y7" FT /db_xref="InterPro:IPR005122" FT /db_xref="UniProtKB/Swiss-Prot:Q7W1Y7" FT /protein_id="CAE39947.1" FT /translation="MPNDNRLAPAALAAQAAALPAAWRHVLEQPAVARAFASVLGHVEQ FT RLAEGAVVYPATPFRALDQLAPADVRVVILGQDPYHGPGQAQGLAFSVPDDCKCPPSLR FT NIFNEIAVDYPRPTRHDLSAWTRQGVLLLNTSLTVEDGQPGSHAKRGWETVTDALIAEV FT ARDPSPKVFLLWGAHAQAKQALVPADAGHLVLAANHPSPLSARRPPVPFVGCGHFRQTN FT AWLQQRGQKPVDWSGEQNNASRQGEFAL" FT misc_feature complement(221174..221665) FT /note="HMMPfam hit to PF03167, Uracil DNA glycosylase FT superfamily, score 8.6e-60" FT misc_feature complement(221612..221641) FT /note="PS00130 Uracil-DNA glycosylase signature." FT misc_feature complement(221798..221851) FT /note="Signal peptide predicted for BPP0206 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.948) with cleavage site FT probability 0.451 between residues 18 and 19" FT CDS complement(221888..222616) FT /transl_table=11 FT /locus_tag="BPP0207" FT /product="haloacid dehalogenase-like hydrolase" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein RSC0271 SWALL:Q8Y2R4 (EMBL:AL646058) (229 aa) fasta FT scores: E(): 2.3e-35, 52.7% id in 222 aa, and to FT Streptomyces coelicolor putative hydrolase SCE68.31c FT SWALL:Q9WX01 (EMBL:AL079345) (215 aa) fasta scores: E(): FT 4.6e-21, 40% id in 220 aa" FT /db_xref="GOA:Q7W1Y6" FT /db_xref="InterPro:IPR006402" FT /db_xref="UniProtKB/TrEMBL:Q7W1Y6" FT /protein_id="CAE39948.1" FT /translation="MDALPTLPPTAAMTDFPFDAVLFDCDGVLVDSEPITNRVLCQMLG FT ELGWELSPEETMRIFTGKAVRDELPLIEARTGTRLTDEWFREFRQRRNDALDRELVEIP FT GAPQAVRALHAALDGRVAVASGADRLKVEMQLAKVGLADCFTGRVFSGQELPRSKPFPD FT VYLTAAQALDVAPSRCAIVEDSVIGATAGVAAGATVFGYSPPGQAGHSDAQALLATGVA FT HVLTDMAELPSVLAAWRAAG" FT misc_feature complement(222002..222565) FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase, score 8.9e-24" FT CDS complement(222669..223406) FT /transl_table=11 FT /locus_tag="BPP0208" FT /product="phosphorylase family protein" FT /note="Similar to Escherichia coli MTA/SAH nucleosidase FT [includes: 5'-methylthioadenosine nucleosidase; FT S-adenosylhomocysteine nucleosidase] Mtn or Pfs FT SWALL:MTN_ECOLI (SWALL:P24247) (232 aa) fasta scores: E(): FT 2.8e-07, 33.48% id in 221 aa, and to Bacillus halodurans FT 5'-methylthioadenosine/S-adenosylhomocysteine nuclosidase FT BH3238 SWALL:Q9K7X0 (EMBL:AP001518) (233 aa) fasta scores: FT E(): 1.3e-21, 38.23% id in 238 aa" FT /db_xref="GOA:Q7W1Y5" FT /db_xref="HSSP:1JYS" FT /db_xref="InterPro:IPR018017" FT /db_xref="UniProtKB/TrEMBL:Q7W1Y5" FT /protein_id="CAE39949.1" FT /translation="MLGILAALTDEIRALLDEMGPGAVTRRIGMRDYHVGELRGQPCVL FT VLTRVGKVTAAATTATLLREFPVDAVVFTGLAGGLHDSVRVGDIVIGTALIQHDLDARP FT LFPQYEVPLLERSHFATDAGLTERLHRCATGFLAGHAAGRAVPPSVHRGLIATGDCFVN FT RADTLRGLKAALPDALCVEMEGAAVAQVCHEFGVPCAVMRTVSDRADGSAMVDFQGFLR FT EVASVYSAGVLRGFLDMPRGARD" FT misc_feature complement(222696..223406) FT /note="HMMPfam hit to PF01048, Phosphorylase family, score FT 1.1e-32" FT CDS 223565..224380 FT /transl_table=11 FT /locus_tag="BPP0209" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PA1350 SWALL:Q9I3Z4 (EMBL:AE004564) (249 aa) fasta FT scores: E(): 1e-55, 59.59% id in 245 aa, and to Ralstonia FT solanacearum hypothetical protein RSC1113 SWALL:Q8Y0D1 FT (EMBL:AL646062) (244 aa) fasta scores: E(): 1.5e-55, 57.37% FT id in 244 aa" FT /db_xref="InterPro:IPR007087" FT /db_xref="UniProtKB/TrEMBL:Q7W1Y4" FT /protein_id="CAE39950.1" FT /translation="MQTSMEGHEVVSRQAWLERRRALLEREKAQTRLRDELAAQRRALP FT WVRVDKPYAFETARGRRTLADLFDGRSQLIVKHFMLGPGWGEGCVGCSFEVDHVEGALL FT HLRHHDVGYVAVSRAPLAEIEAFKRRMGWGFEWVSSYGDDFNFDYHVSFTPQDMARGRG FT QYNYAETELPIDELSGLSVFYRDAVGEVFHTYSAYGRGAEEVLGAYMLLDLTPKGRNET FT GPRHDLTDWVRHHDRYGAAGQVAATGRYEASGGQAPPDAAPGCCGAPHT" FT CDS complement(224386..225165) FT /transl_table=11 FT /locus_tag="BPP0210" FT /product="AraC family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator PA2488 SWALL:Q9I0Z4 FT (EMBL:AE004676) (254 aa) fasta scores: E(): 1e-25, 38.09% FT id in 252 aa, and to Rhizobium meliloti putative FT transcription regulator protein SMC00994 SWALL:Q92RK7 FT (EMBL:AL591785) (260 aa) fasta scores: E(): 1.2e-22, 35.06% FT id in 231 aa" FT /db_xref="GOA:Q7W1Y3" FT /db_xref="InterPro:IPR018062" FT /db_xref="UniProtKB/TrEMBL:Q7W1Y3" FT /protein_id="CAE39951.1" FT /translation="MLEQGPPTVNPAHLLTAFSIERARQARGISVPAHSHAEGMLVLVQ FT TGLALVQGNTEMLTMAPGNIGWVPPGIMHEAHWFGHARGTFLYVRADACARLPGHTSAW FT PLRPLVDALIDRLAGPAGAALSPAYGERLFDILLTELGLCEQSAHTLPMPRERRLRELA FT VRLLASPDDGSSIEAWAERLNMSARTLMRRFRGETGITLGQWRQKVRLLRALELLAGGK FT PVTDVALAVGYDSPSAFIGSFRATYGVTPSQYFARNA" FT misc_feature complement(224398..224526) FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family, score 3.2e-09" FT misc_feature complement(224413..224538) FT /note="PS00041 Bacterial regulatory proteins, araC family FT signature." FT misc_feature complement(224545..224679) FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family, score 3.9e-05" FT CDS 225277..225717 FT /transl_table=11 FT /gene="fur" FT /locus_tag="BPP0211" FT /product="ferric uptake regulation protein" FT /note="Similar to Bordetella pertussis ferric uptake FT regulation protein Fur SWALL:FUR_BORPE (SWALL:Q45765) (139 FT aa) fasta scores: E(): 2.8e-23, 50.76% id in 130 aa, and to FT Burkholderia cepacia ferric uptake regulator Fur FT SWALL:Q9AP02 (EMBL:AF317836) (142 aa) fasta scores: E(): FT 4.2e-21, 51.53% id in 130 aa" FT /db_xref="GOA:Q7W1Y2" FT /db_xref="HSSP:1MZB" FT /db_xref="InterPro:IPR002481" FT /db_xref="UniProtKB/TrEMBL:Q7W1Y2" FT /protein_id="CAE39952.1" FT /translation="MVGKDLRSAGIKATLPRLQVLEVFNRHPDRHLSAAEVYRTLAAER FT TPLGLATVYRVLGQLAQAGVLSRLQLDPHGSLFELAGKGRHDHLVCTRCGRVVESADPA FT IARQAARVARRHGFVLETYNLGLYGRCRTCSALVSGPKGVFE" FT misc_feature 225298..225660 FT /note="HMMPfam hit to PF01475, Ferric uptake regulator FT family, score 1.6e-42" FT CDS 225714..226112 FT /transl_table=11 FT /locus_tag="BPP0212" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein RSC1812 SWALL:Q8XYE6 (EMBL:AL646066) (138 aa) fasta FT scores: E(): 1.8, 25.37% id in 134 aa, and to the FT C-terminal region of Pseudomonas aeruginosa hypothetical FT protein PA3720 SWALL:Q9HXS1 (EMBL:AE004791) (195 aa) fasta FT scores: E(): 1.6e-07, 33.08% id in 136 aa" FT /db_xref="UniProtKB/TrEMBL:Q7W1Y1" FT /protein_id="CAE39953.1" FT /translation="MNQADFRYHDVTGFPLVVARHRAGEPGFAARWIAEMERLAGNAAQ FT FVMIVPDLDVEIAHDDRKAMVQWQTGNMARLRECCKGFIAVKPDPSGLARTQAQAEKMT FT RAFGLPFCAVATLAQAREKARQLLEPAG" FT CDS complement(226120..227316) FT /transl_table=11 FT /locus_tag="BPP0213" FT /product="putative Na+/H+ antiporter protein" FT /note="Similar to Escherichia coli Na+/H+ antiporter 1 NhaA FT or Ant SWALL:NHAA_ECOLI (SWALL:P13738) (388 aa) fasta FT scores: E(): 2.1e-68, 52.82% id in 390 aa, and to Rhizobium FT loti Na+/H+ antiporter MLR5309 SWALL:Q98C38 (EMBL:AP003006) FT (398 aa) fasta scores: E(): 3.7e-86, 61.05% id in 398 aa" FT /db_xref="GOA:Q7W1Y0" FT /db_xref="InterPro:IPR004670" FT /db_xref="UniProtKB/Swiss-Prot:Q7W1Y0" FT /protein_id="CAE39954.1" FT /translation="MPTTPTRAPSLLQAFLRSEALGGYVLMIAAVLALIVANSPLAPAY FT FQLLGTKLGYASEAFTLKESVLHWINDGLMAVFFLLVGLEIKREMLDGQLRGVSRIVLP FT GVAAAGGMLMPALVYLLVNQGDPAGLRGWAIPAATDIAFALGILALLGSRVPTSLKIFL FT TALAILDDLGAIAIIAVFYTAELNTSALAAAGGLLAALCVLNRLRVLRLAPYLLVGALL FT WYFVLKSGVHATLAGVALALAIPLRRQDPRQPGAEHSPLHALEHALHRPVALLIVPVFG FT FANAGVSFDGMGIDSLTAPIPLGIALGLFLGKQLGVFGFAWLAIRTGLASMPRHASFAQ FT LYGVALLCGIGFTMSLFIGALAFDDAATIDATKIGVLTGSLVSAVLGYALLRVLPPAD" FT misc_feature complement(join(226129..226194,226234..226299, FT 226345..226410,226450..226515,226585..226650, FT 226687..226752,226765..226830,226852..226917, FT 226948..227013,227065..227121,227191..227256)) FT /note="11 probable transmembrane helices predicted for FT BPP0213 by TMHMM2.0 at aa 20-42, 65-84, 101-123, 133-155, FT 162-184, 188-210, 222-244, 267-289, 302-324, 339-361 and FT 374-396" FT CDS 227508..227858 FT /transl_table=11 FT /locus_tag="BPP0214" FT /product="hypothetical protein" FT /note="No significant database matches. Doubtful CDS" FT /db_xref="UniProtKB/TrEMBL:Q7W1X9" FT /protein_id="CAE39955.1" FT /translation="MAGTLAPIRALFFWPDGAAAPRLVDTGPHLRAPGRGGYQLRLLRP FT SLALRRLARGQARVSVWHGVLRIWQGDALRAAEPAHAGPRARALTAAELRYLAAWLHQQ FT GLHWNTLHDAAL" FT CDS 227842..228975 FT /transl_table=11 FT /locus_tag="BPP0215" FT /product="putative glycosyl transferase" FT /note="Similar to Xylella fastidiosa hypothetical protein FT XF1470 SWALL:Q9PDA9 (EMBL:AE003977) (376 aa) fasta scores: FT E(): 4.8e-20, 42.48% id in 379 aa, and to Streptomyces FT coelicolor putative glycosyl transferase SCH4.05c FT SWALL:Q9KYT4 (EMBL:AL355913) (391 aa) fasta scores: E(): FT 3.8e-14, 33.06% id in 372 aa" FT /db_xref="GOA:Q7W1X8" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7W1X8" FT /protein_id="CAE39956.1" FT /translation="MTQRSEPAVPALRILHTEAATGAGGQETSIYREMLAMRARGHHLE FT AACQPGAPLARRLRAAGFPVHELAMDGVAAGVRAVWRLRELVRGRFDVVNTHSRRDTVL FT AAWAGRMAGAPLIVRTRHLAKPVGSLYTYTWLPHRVIAVSDHVRGQILRAGARAAHVEA FT IASPATLAPAPPASSLRAELGIAAAAQVIGCVAVMRADKGLDDLLDAFVALAGRHAAAH FT LVLVGEPGGIGALLRERAQRLGLGARVHLTGHRDDIPNVLAAFDVFALPTRSEALGLAM FT VEAAAAGLPVIAGNVGGVPEVVRHGATGLLVPPSDPAALAQALERLLVDPALRRAMGRA FT GSRMVRDERDFSPERQAARVEAAYCRWLAQRGRPAWR" FT misc_feature 228364..228873 FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1, score 8.5e-48" FT CDS complement(228985..229449) FT /transl_table=11 FT /locus_tag="BPP0216" FT /product="conserved hypothetical protein" FT /note="Poor database matches. Weakly similar to FT Halobacterium sp histidine triad protein VNG2186G FT SWALL:Q9HNA0 (EMBL:AE005106) (142 aa) fasta scores: E(): FT 0.33, 30.14% id in 136 aa" FT /db_xref="GOA:Q7W1X7" FT /db_xref="InterPro:IPR011151" FT /db_xref="UniProtKB/TrEMBL:Q7W1X7" FT /protein_id="CAE39957.1" FT /translation="MSTRHPDCPLCQQDGGALLWRGSHLRVIEVDDPDYPGFTRVVWNA FT HIAEMTSLSTHGRELLMRAVWAVEQAQRDVLHPDKVNLAALGNVVPHLHWHVIPRWRDD FT RHFPDAIWAAPRVAPGAEPQAWRAARADTAALLPRYRNRVVEAMNALLWH" FT CDS complement(229446..229895) FT /transl_table=11 FT /locus_tag="BPP0217" FT /product="acetyltransferase (GNAT) family protein" FT /note="Similar to Pseudomonas aeruginosa probable FT acetyltransferase PA5432 SWALL:Q9HTD4 (EMBL:AE004956) (149 FT aa) fasta scores: E(): 2.4e-44, 67.34% id in 147 aa, and FT weakly similar to Enterobacter aerogenes aminoglycoside FT N(6')-acyltransferase AacA7 SWALL:AAC6_ENTAE (SWALL:P50858) FT (152 aa) fasta scores: E(): 0.023, 24.66% id in 150 aa" FT /db_xref="GOA:Q7W1X6" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:Q7W1X6" FT /protein_id="CAE39958.1" FT /translation="MTPTEIRPLSAADHEAWLPLWKGYQEFYKVQLADAATAQTWQRFL FT DPAEPMHAALAWRDGKAIGMVHWIFHRSCWTTGDYCYLQDLFVAPDVRSSGAGRALIEH FT VYADARAQGAARVYWLTHETNTDAMHLYDHIADRSGFLQYRKVLA" FT misc_feature complement(229482..229736) FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family, score 5.9e-15" FT CDS complement(229928..231451) FT /transl_table=11 FT /locus_tag="BPP0218" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PA3455 SWALL:Q9HYF1 (EMBL:AE004766) (496 aa) fasta FT scores: E(): 6.7e-90, 49.38% id in 490 aa, and to FT Synechocystis sp hypothetical protein SLR1363 SWALL:P73537 FT (EMBL:D90907) (500 aa) fasta scores: E(): 2.1e-57, 34.83% FT id in 488 aa. Possible alternative translational start FT site" FT /db_xref="InterPro:IPR005660" FT /db_xref="UniProtKB/TrEMBL:Q7W1X5" FT /protein_id="CAE39959.1" FT /translation="MRNGGISRTIGRSPSTHCAMFIEAEADPSLSKAQYKAREARLRTA FT LLKAQYERLQRAEQSLLIVVTGIDGAGKGDTINMLNEWMDPRHIHTMAFGLPDAEELAR FT PPMWRYWNELPAKGRTGIVFGSWYVPLLLEAVRKKPDTARLEAHAAQIRRFEAMLAAEG FT VQIVKLWYHLSAQAQAERTERLLANPETAWQVTPADRKVRKKYGRLRNAGQVAMAYTDA FT AHAPWRVIPSADDEMRAVRTAEAVLAAMRRRATPRSVRAFGAPSPAVHLVDRLGALDYD FT AKEDKDDYEAELGLLQGRLARAVRRDDFRERSLVLVFEGQDAAGKGGAIRRVTRALDAR FT QYDITPVAAPARHELARPYLWRFWRRIPRQGRIAIFDRSWYGRVLVERVENITAPTDWR FT RAYGEILDFERQLVGHGAIVLKFWLAITPAVQLERFREREKSPYKNFKITPDDWRNRKQ FT WQAYADAANEMLCRTDMREAPWHLVSSNDKRYARLQVLRHIVETLEDQL" FT CDS complement(231465..232334) FT /transl_table=11 FT /locus_tag="BPP0219" FT /product="metallo-beta-lactamase superfamily protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein RSC1544 SWALL:Q8XZ60 (EMBL:AL646065) (286 aa) fasta FT scores: E(): 5.6e-77, 67.24% id in 290 aa, and to FT Pseudomonas aeruginosa hypothetical protein PA2915 FT SWALL:Q9HZT2 (EMBL:AE004717) (288 aa) fasta scores: E(): FT 5.2e-70, 61.24% id in 289 aa" FT /db_xref="GOA:Q7W1X4" FT /db_xref="InterPro:IPR001279" FT /db_xref="UniProtKB/TrEMBL:Q7W1X4" FT /protein_id="CAE39960.1" FT /translation="MSAHIQPFFDPATATFSYVLYEAPGGACAVIDPVLDFDPKSGRTT FT TASADRIADFVRQYALRTQWLLETHAHADHLSAAAYLQRQLGGVIGIGGHIRDVQVVFS FT KLYNLDGFACDGSQFGHLFEPDETFAIGALRVRALHVPGHTPADLAYLIDDGDSLSAFV FT GDTLFMPDVGTARCDFPGGDARTLYHSIRTLLALPPDTRLYMCHDYPPAGRAAAWQTTV FT AAQRAGNIHVRDGISESEFVAMRTARDATLDMPTLILPALQVNIRAGELPAPEANGTRY FT LRIPLDAL" FT misc_feature complement(231714..232307) FT /note="HMMPfam hit to PF00753, Metallo-beta-lactamase FT superfamily, score 1.2e-17" FT CDS 232438..232773 FT /transl_table=11 FT /locus_tag="BPP0220" FT /product="ArsR family regulatory protein" FT /note="Similar to Vibrio cholerae transcriptional activator FT HlyU SWALL:HLYU_VIBCH (SWALL:P52695) (108 aa) fasta scores: FT E(): 1.2e-10, 43.61% id in 94 aa, and to Ralstonia FT solanacearum probable transcription regulator protein FT RSC1543 SWALL:Q8XZ61 (EMBL:AL646065) (121 aa) fasta scores: FT E(): 1.2e-26, 72.54% id in 102 aa" FT /db_xref="GOA:Q7W1X3" FT /db_xref="InterPro:IPR001845" FT /db_xref="UniProtKB/TrEMBL:Q7W1X3" FT /protein_id="CAE39961.1" FT /translation="MDDTLTDCEISALRASAAQACALLKALANEDRLLLLCQLVAAERN FT VGELETLTGIRQPTLSQQLGVLRDEGLVDTRRAGKYVYYQLASFEVGQVMKTLSSLYCG FT KASREQS" FT misc_feature 232507..232740 FT /note="HMMPfam hit to PF01022, Bacterial regulatory FT protein, arsR family, score 1e-17" FT CDS 232770..233201 FT /transl_table=11 FT /locus_tag="BPP0221" FT /product="putative membrane protein" FT /note="Similar to Ralstonia solanacearum probable FT transmembrane protein RSC0438 SWALL:Q8Y298 (EMBL:AL646059) FT (144 aa) fasta scores: E(): 4.9e-25, 60.41% id in 144 aa, FT and to Rhizobium meliloti hypothetical protein SMA1053 FT SWALL:Q92ZC0 (EMBL:AE007247) (136 aa) fasta scores: E(): FT 1.8e-18, 54.41% id in 136 aa" FT /db_xref="InterPro:IPR007272" FT /db_xref="UniProtKB/TrEMBL:Q7W1X2" FT /protein_id="CAE39962.1" FT /translation="MTIDWAAFTPWSSLGGGMLIGAAAAWLMLGAGRIAGISGILAGLL FT PPRAGAAWRMWFLAGLLAAPWLYRVFEPMPAVRIEAGALQLVLAGLLVGVGTRYGSGCT FT SGHGVCGLARGSRRSLVAVLAFMATGFATVFVLRHLMGA" FT misc_feature join(232812..232880,232917..232970,232998..233066, FT 233127..233195) FT /note="4 probable transmembrane helices predicted for FT BPP0221 by TMHMM2.0 at aa 15-37, 50-67, 77-99 and 120-142" FT CDS join(233203..233394,233396..233617) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0222" FT /product="putative membrane protein (Pseudogene)" FT /note="Similar to Ralstonia solanacearum probable FT transmembrane protein RSC0437 SWALL:Q8Y299 (EMBL:AL646059) FT (137 aa) fasta scores: E(): 1.9e-26, 61.76% id in 136 aa, FT and to Vibrio cholerae hypothetical protein VCA0640 FT SWALL:Q9KLV1 (EMBL:AE004394) (154 aa) fasta scores: E(): FT 5.6e-20, 52% id in 125 aa. Contains a frameshift after FT codon 64" FT /db_xref="PSEUDO:CAE39963.1" FT misc_feature 233203..233271 FT /note="Signal peptide predicted for BPP0222 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.956) with cleavage site FT probability 0.882 between residues 23 and 24" FT misc_feature join(233311..233379,233449..233517,233530..233598) FT /note="4 probable transmembrane helices predicted for FT BPP0222 by TMHMM2.0 at aa 5-22, 37-59, 83-105 and 110-132" FT CDS complement(233633..234898) FT /transl_table=11 FT /locus_tag="BPP0223" FT /product="putative phenylacetate-CoA ligase" FT /note="Similar to Azoarcus evansii aerobic FT phenylacetate-CoA ligase PaaK or PacD SWALL:Q9L9C1 FT (EMBL:AF176259) (440 aa) fasta scores: E(): 8.5e-22, 29.73% FT id in 417 aa, and to Archaeoglobus fulgidus coenzyme F390 FT synthetase Af2013 SWALL:O28266 (EMBL:AE000964) (440 aa) FT fasta scores: E(): 9.3e-24, 30.04% id in 446 aa" FT /db_xref="GOA:Q7W1X1" FT /db_xref="InterPro:IPR000873" FT /db_xref="UniProtKB/TrEMBL:Q7W1X1" FT /protein_id="CAE39964.1" FT /translation="MSEFFDVLETRQPAQRERDLMQALPAAIERAMARAPAIAGQLRGI FT DPRSVDNRAALAALPVLRKHELLERQQHSRDGAGPAGPAKAFGGFSTVGWGQALRVFAS FT PGPIYEPEGNRADYWRFARALYAAGFRAGELAYNCFSYHFTPAGSMMETAAHAVGCTVF FT PGGTGQTEQQVRAIHDLAPSGYTGTPSFLKLILEKADELGIRLDSLRRALVSGEAFPPS FT LRDWLAARGIEGYQAYGSADLGMIAFETPAREGLVVGEDIILEIVRPGTGEPVPDGEVG FT EVVVTTLNPDYPLVRFGTGDLSAIMPGQSPCGHTNIRIRGWLGRADQTTKVRGMFVHPS FT QVADVLRRHPEIVRARLVVSGATGADHMVLHVQARERSPELAGRIADSVREVTKLRADV FT QWADEGALPNDGKVIDDVRSYE" FT CDS complement(234967..235797) FT /transl_table=11 FT /locus_tag="BPP0224" FT /product="ABC transporter ATP-binding protein" FT /note="Similar to Salmonella typhimurium and Salmonella FT typhi high-affinity branched-chain amino acid transport FT ATP-binding protein LivF or LivG SWALL:LIVF_SALTY FT (SWALL:P30294) (237 aa) fasta scores: E(): 2.8e-26, 41.8% FT id in 244 aa, and to Rhizobium loti ABC transporter, FT ATP-binding protein MLR5224 SWALL:Q98CB2 (EMBL:AP003006) FT (268 aa) fasta scores: E(): 5.1e-45, 56.07% id in 255 aa" FT /db_xref="GOA:Q7W1X0" FT /db_xref="HSSP:1JI0" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W1X0" FT /protein_id="CAE39965.1" FT /translation="MTAANNAPADKVLLDVNGIEVIYNHVILVLKGVSLRVPEGRIVAL FT LGANGAGKTTTLRAVSNLLKGERGDVTKGYIQYRDERIERLSPAELVKRGVVQVMEGRH FT CFAHLTIEENLLTGAYTRKLGRGDIDAALERVYQYFPRLKQRRTSQAGYTSGGEQQMTA FT IGRALMASPTMILLDEPSMGLAPQIVEEIFEIVRDLNQRERVSFLLAEQNTNIALRYAD FT YGYILENGRVMMDGAAAELAQNEDVKEFYLGISSGERKSFREQKFYRRRKRWLA" FT misc_feature complement(235108..235680) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 1.6e-33" FT misc_feature complement(235636..235659) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(join(235859..236944,236944..237192)) FT /pseudo FT /transl_table=11 FT /locus_tag="BPP0225" FT /product="putative exported protein (Pseudogene)" FT /note="Similar to Rhizobium loti hypothetical protein FT MLR5223 SWALL:Q98CB3 (EMBL:AP003006) (445 aa) fasta scores: FT E(): 1.3e-67, 43.77% id in 434 aa, and to Agrobacterium FT tumefaciens plasmid AT hypothetical protein AGR_PAT_777P FT SWALL:AAK90898 (EMBL:AE007920) (457 aa) fasta scores: E(): FT 2.3e-66, 43.37% id in 438 aa. Contains a frameshift after FT codon 83" FT /db_xref="PSEUDO:CAE39966.1" FT misc_feature complement(237103..237192) FT /note="Signal peptide predicted for BPP0225 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 30 and 31" FT CDS complement(237305..238369) FT /transl_table=11 FT /locus_tag="BPP0226" FT /product="putative branched-chain amino acid transport FT system permease" FT /note="Similar to Rhizobium loti ABC transporter, permease FT protein MLR5222 SWALL:Q98CB4 (EMBL:AP003006) (346 aa) fasta FT scores: E(): 2.1e-56, 50.62% id in 318 aa, and to FT Agrobacterium tumefaciens str. C58 ABC transporter, FT membrane spanning protein ATU5523 SWALL:AAL46209 FT (EMBL:AE008972) (364 aa) fasta scores: E(): 3.4e-55, 47.98% FT id in 323 aa" FT /db_xref="GOA:Q7W1W9" FT /db_xref="InterPro:IPR001851" FT /db_xref="UniProtKB/TrEMBL:Q7W1W9" FT /protein_id="CAE39967.1" FT /translation="MFYRENGQFKTSYRADQQIFPIRQDRIFIALLMAVIFVVVPLTAS FT DYLLRAILIPFLLLALAAVGLNILVGYCGQISLGTGAFMAVGAYAAWNFGVRFPGMPLV FT AQILLGGCFATLVGVIFGIPSLRIRGLYLAVATLAAQFFVDWAFLRIPFFTNYSSSGSV FT SVPPMTFFGLPVQSALEKYLLVLGFVVVFTLLAKNLVRGAIGRQWMAIRDMDVAAAVIG FT IRPMYAKLSAFAVSSFIVGVAGALWGYVHLGSWEPLAFDLARSFQLLFMVIIGGLGSIL FT GSFFGAAFIVLVPVALTNVPHLLGLSLSVDTAAHIEHMVFGALIVFFLIAEPHGLARLW FT SIAKEKLRIWPFPH" FT misc_feature complement(join(237344..237409,237494..237559, FT 237605..237670,237758..237823,237923..237979, FT 238001..238066,238082..238138,238160..238225, FT 238238..238288)) FT /note="9 probable transmembrane helices predicted for FT BPP0226 by TMHMM2.0 at aa 27-44, 48-70, 77-96, 101-123, FT 130-149, 182-204, 233-255, 270-292 and 320-342" FT misc_feature complement(237347..238240) FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component, score 1.4e-07" FT CDS complement(238380..239309) FT /transl_table=11 FT /locus_tag="BPP0227" FT /product="putative branched-chain amino acid transport FT system permease" FT /note="Similar to Salmonella typhimurium and Salmonella FT typhi high-affinity branched-chain amino acid transport FT system permease protein LivH or LivA SWALL:LIVH_SALTY FT (SWALL:P30295) (308 aa) fasta scores: E(): 3.5e-19, 27.18% FT id in 320 aa, and to Rhizobium loti ABC transporter, FT permease protein MLR5220 SWALL:Q98CB5 (EMBL:AP003006) (299 FT aa) fasta scores: E(): 3.5e-40, 50.81% id in 307 aa" FT /db_xref="GOA:Q7W1W8" FT /db_xref="InterPro:IPR001851" FT /db_xref="UniProtKB/TrEMBL:Q7W1W8" FT /protein_id="CAE39968.1" FT /translation="MGFFLETLFGGLMSGMLYALIGLGFVLIFKASGVFNFAQGAMVLV FT AALSMARFSEWIPQWLGFENMLLANVLAFIVSALVMFVLAVAVERFVLRHLVNQEATTL FT LMATLGISYFLDGLGQIAFGSSVYSINVGMPKDPAIILETMFEGGLLINLEGLTAAVVA FT ALLVAALALFFQYTSTGRALRAVADDHQAAQSIGIPLNRIWVIVWSVAGLVALVAGIIW FT GSKFGVQFTLSTAALRALPVVILGGLTSVPGAILGGLIIGVGEKMSEVYLGSLVGGGIE FT IWFAYVLALVFLLFRPQGLFGEKIIDRV" FT misc_feature complement(238395..239300) FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component, score 1.2e-10" FT misc_feature complement(join(238431..238496,238518..238583, FT 238644..238709,238788..238853,238941..239006, FT 239046..239111,239157..239207,239223..239279)) FT /note="8 probable transmembrane helices predicted for FT BPP0227 by TMHMM2.0 at aa 10-29, 34-51, 66-88, 101-123, FT 152-174, 200-222, 242-264 and 271-293" FT CDS complement(239320..240117) FT /transl_table=11 FT /locus_tag="BPP0228" FT /product="putative high-affinity branched-chain amino acid FT transport ATP-binding protein" FT /note="Similar to Salmonella typhimurium and Salmonella FT typhi high-affinity branched-chain amino acid transport FT ATP-binding protein LivG or LivF SWALL:LIVG_SALTY FT (SWALL:P30293) (255 aa) fasta scores: E(): 2.7e-29, 38.58% FT id in 254 aa, and to Rhizobium loti ABC transporter, FT ATP-binding protein MLR5219 SWALL:Q98CB6 (EMBL:AP003006) FT (272 aa) fasta scores: E(): 3.8e-43, 55.37% id in 251 aa" FT /db_xref="GOA:Q7W1W7" FT /db_xref="HSSP:1G6H" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W1W7" FT /protein_id="CAE39969.1" FT /translation="MSNQTRAQRIGDVMLDMQNISLSFGGVKALTDISFNVREHEIRAI FT IGPNGAGKSSMLNVINGVYTPQNGAIMLRGEHFSRMSPRRAAEMGIARTFQNLALFKGM FT SVLDNIMTGRNLRMKSGLLAQALRLGPAEREEIAHREYVENIIDFLEIQAYRKVPVGRL FT PYGLQKRVDLGRALAMEPRLLLLDEPMAGMNIEEKQDMSRFILDVNDEFGTTIVLIEHD FT MGVVMDISDRVVVLDYGKKIGDGSPDEVRSNEDVIRAYLGVAH" FT misc_feature complement(239401..240000) FT /note="HMMPfam hit to PF00005, ABC transporter, score FT 3.2e-45" FT misc_feature complement(239956..239979) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)." FT CDS complement(240121..242097) FT /transl_table=11 FT /locus_tag="BPP0229" FT /product="putative AMP-binding enzyme" FT /note="Similar to Aeropyrum pernix hypothetical FT long-chain-fatty-acid--CoA ligase APE1307 SWALL:Q9YCF0 FT (EMBL:AP000061) (651 aa) fasta scores: E(): 1.4e-81, 37.95% FT id in 635 aa, and weakly similar to Homo sapiens very FT long-chain acyl-CoA synthetase BG1 SWALL:Q9HC26 FT (EMBL:AF179481) (724 aa) fasta scores: E(): 1.9e-28, 25.03% FT id in 639 aa" FT /db_xref="GOA:Q7W1W6" FT /db_xref="InterPro:IPR000169" FT /db_xref="UniProtKB/TrEMBL:Q7W1W6" FT /protein_id="CAE39970.1" FT /translation="MAQSLPASATVPAAAQTFPALLLEHASVRGSRPAIREKDLGIWQT FT LTWSEVAASVRLTAHGLAALGIGPGMHVAVIGENRPRLYIAMMATQALGAIPVPLYQDA FT VAQEMVYVLQDAEVSVVVVEDQEQADKMLEVREQCPALAHVVYDDPRGMRHYSDPLLRS FT FEQLEDTGRAHAASHPGFFEQAVAAVRPHDAGAMFYTSGTTGKPKGVVLTHHALIDRAR FT AVAEMENLTDQEDVLAYLPPAWIGQNMFSYTQLLVSGFTVNHPESPETVSIDMRDIGPT FT YYFAPPRVLEGLLTHVMIRMEDAGYIKRKLFHACMNLARRVGTRILDGQPVGLWDRLRY FT RLGDALIYGPLRNALGMSRVRVAYTAGEAIGPDLFVFYRSIGINLKQLYGSTETSVFVC FT VQPDGHVRDDTVGPPVEGVDIRVADNGEILVKSPGLFKEYYRNPEATAEARDDDGWFHT FT GDAGYLDSDGQLKIIDRAKDVGKLADGSLFAPKYIENKLKFFPYIKEAVAFGNGRDDVC FT AFINIDLEAVGNWAERRGLPYAGYTDLAGKDEVYALLQDCVEKVNADLAGDARLAASQV FT GRFLILRKELDPDDDELTRTRKVRRAFIGQKYGVLVDALYGGKDTQFIETEVKFEDGRV FT GRISADLKIRAARTFPAITAKAA" FT misc_feature complement(240574..241959) FT /note="HMMPfam hit to PF00501, AMP-binding enzyme, score FT 6.3e-81" FT misc_feature complement(241474..241509) FT /note="PS00455 Putative AMP-binding domain signature." FT misc_feature complement(242053..242097) FT /note="Signal peptide predicted for BPP0229 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.809) with cleavage site FT probability 0.746 between residues 15 and 16" FT CDS 242264..242974 FT /transl_table=11 FT /locus_tag="BPP0230" FT /product="cyclic nucleotide-binding protein" FT /note="Weakly similar to Escherichia coli catabolite gene FT activator Crp or Cap or Csm SWALL:CRP_ECOLI (SWALL:P03020) FT (210 aa) fasta scores: E(): 0.00055, 24.59% id in 187 aa, FT and to Pseudomonas aeruginosa probable transcriptional FT regulator PA0275 SWALL:Q9I6L5 (EMBL:AE004465) (228 aa) FT fasta scores: E(): 5.9e-09, 29.57% id in 213 aa" FT /db_xref="GOA:Q7W1W5" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W1W5" FT /protein_id="CAE39971.1" FT /translation="MQLADSLYLAAAWFRVLDAAQKLRVERDIAVQQVQAGTIIERKGE FT LAQVWIGVLSGLVKVSVGNAEGKVASLTGVPAGGWIGEGSLLKREVRKYDVVALRDSVV FT ARLPAGTFDWLLDTSIPFNRYLLHQLNERVAQFIGKAEYDRLLDPDARVARCLAELFNL FT LLYPGMGMRLTITQEEVGYLARVSRQRANQALRKLEEAGLLQVEYGAVRVLDLDGLKGY FT GADTDTAGALDDAG" FT misc_feature 242345..242626 FT /note="HMMPfam hit to PF00027, Cyclic nucleotide-binding FT domain, score 5.6e-10" FT CDS complement(242981..243616) FT /transl_table=11 FT /locus_tag="BPP0231" FT /product="probable transporter" FT /note="ortholog of Bordetella pertussis (BX470248) BP0564" FT /db_xref="GOA:Q7W1W4" FT /db_xref="InterPro:IPR001123" FT /db_xref="UniProtKB/TrEMBL:Q7W1W4" FT /protein_id="CAE39972.1" FT /translation="MFTLSVPAYVTAWASGAATGLGLFAVVGAQSAFILRQGLMRAHLL FT SILAVCALIDAVFIFGSVWGLQTLTGWFPWLTQAILWFGVAFLAWYALQSARRALRSDG FT GLEVARQAIPSRGAALLGAIGFSLLNPHFWLDMMVVGSLAHGFADARLAFAAGALTASV FT VWLAVLGVGSRLFAPLFSSPRAWRVLDGLIAAVMALLAARLALGGLAG" FT misc_feature complement(join(242996..243061,243101..243166, FT 243212..243277,243338..243403,243419..243484, FT 243521..243586)) FT /note="6 probable transmembrane helices predicted for FT BPP0231 by TMHMM2.0 at aa 10-32, 44-66, 71-93, 113-135, FT 150-172 and 185-207" FT misc_feature complement(243077..243397) FT /note="HMMPfam hit to PF01810, LysE type translocator, FT score 8.1e-18" FT misc_feature complement(243530..243616) FT /note="Signal peptide predicted for BPP0231 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.835) with cleavage site FT probability 0.262 between residues 29 and 30" FT CDS 243746..244645 FT /transl_table=11 FT /locus_tag="BPP0232" FT /product="probable LysR-family transcriptional regulator" FT /note="ortholog of Bordetella pertussis (BX470248) BP0563" FT /db_xref="GOA:Q7W1W3" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W1W3" FT /protein_id="CAE39973.1" FT /translation="MKLDHGNLRALAAVVREGSFERAAAALSVTPSAVSQRVKALEDRM FT GRLLVQRTVPARATDDGQVLVQLAEQAALLEHDALNRLGVAEDEVPHASIPVAVNHDSL FT ETWFVDAAVRFAARSRATLDLQSEDQDHTAALLRKGAVLGAVTTLADPVQGCRIHALGS FT MRYVACCTPTFHQRYFAQGVSARTLASAPVLVFNRKDALQARYAHRIIGRAAWEPPVWW FT LPSS |