 |
|
EBI DbfetchID BX640422; SV 1; linear; genomic DNA; STD; PRO; 257701 BP. XX AC BX640422; XX DT 09-AUG-2003 (Rel. 76, Created) DT 23-OCT-2008 (Rel. 97, Last updated, Version 6) XX DE Bordetella pertussis strain Tohama I, complete genome; segment 12/12 XX KW complete genome. XX OS Bordetella pertussis OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Bordetella. XX RN [2] RP 1-257701 RA Sebaihia M.; RT ; RL Submitted (06-AUG-2003) to the EMBL/GenBank/DDBJ databases. RL Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute, RL Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail: RL ms5@sanger.ac.uk XX RN [3] RA Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E., RA Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., RA Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A., RA Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I., RA Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., RA Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., RA Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., RA Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., RA Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., RA Barrell B.G., Maskell D.J.; RT "Comparative analysis of the genome sequences of Bordetella pertussis, RT Bordetella parapertussis and Bordetella bronchiseptica"; RL Nat. Genet. 35(1):0-0(2003). XX DR EMBL-CON; BX470248. DR RFAM; RF00140; Alpha_RBS. XX FH Key Location/Qualifiers FH FT source 1..257701 FT /organism="Bordetella pertussis" FT /strain="Tohama I" FT /mol_type="genomic DNA" FT /db_xref="taxon:520" FT CDS 76..1266 FT /transl_table=11 FT /gene="tuf" FT /gene_synonym="tufA" FT /gene_synonym="tufB" FT /locus_tag="BP3611" FT /product="elongation factor Tu" FT /note="Similar to Escherichia coli elongation factor Tu FT (EF-Tu) TufA or TufB (duplicate of TufA) SW:EFTU_ECOLI FT (P02990) (393 aa) fasta scores: E(): 1.1e-122, 81.47% id in FT 394 aa, and to Burkholderia cepacia elongation factor Tu FT Tuf SW:EFTU_BURCE (P33167) (396 aa) fasta scores: E(): FT 3.4e-139, 92.65% id in 395 aa. Identical to BP0007, FT 100.000% identity (100.000% ungapped) in 396 aa overlap" FT /db_xref="GOA:Q7TT91" FT /db_xref="HSSP:1ETU" FT /db_xref="InterPro:IPR004160" FT /db_xref="UniProtKB/Swiss-Prot:Q7TT91" FT /protein_id="CAE43869.1" FT /translation="MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLSNKFGGEAR FT GYDQIDAAPEEKARGITINTSHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAIL FT VVSAADGPMPQTREHILLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSKYDF FT PGDDTPIVKGSAKLALEGDKGELGEQAILSLAQALDTYIPTPERAVDGAFLMPVEDVFS FT ISGRGTVVTGRIERGVVKVGEEIEIVGIKPTVKTTCTGVEMFRKLLDQGQAGDNVGILL FT RGTKREDVERGQVLAKPGSINPHTDFTAEVYILSKEEGGRHTPFFNGYRPQFYFRTTDV FT TGTIDLPADKEMVLPGDNVSMTVKLLAPIAMEEGLRFAIREGGRTVGAGVVAKIIK" FT misc_feature 103..1203 FT /note="HMMPfam hit to PF00009, Elongation factor Tu family" FT misc_feature 130..153 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 226..273 FT /note="ScanRegExp hit to PS00301, GTP-binding elongation FT factors signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 1330..1641 FT /transl_table=11 FT /gene="rpsJ" FT /gene_synonym="nusE" FT /locus_tag="BP3612" FT /product="30S ribosomal protein S10" FT /note="Similar to Escherichia coli 30S ribosomal protein FT S10 RpsJ SW:RS10_ECOLI (P02364) (103 aa) fasta scores: E(): FT 8.4e-28, 76.47% id in 102 aa, and to Neisseria meningitidis FT 30S ribosomal protein S10 NMA0133 TR:Q9JR21 (EMBL:AL162752) FT (103 aa) fasta scores: E(): 1.2e-29, 79.61% id in 103 aa" FT /db_xref="GOA:Q7VTD4" FT /db_xref="InterPro:IPR018268" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTD4" FT /protein_id="CAE43870.1" FT /translation="MKNQKIRIRLKAFDYKLIDQSAAEIVDTAKRTGAVVRGPVPLPTR FT IRRYDVLRSPHVNKTSRDQFEIRTHQRLMDIVDPTDKTVDALMRLDLPAGVDVEIALQ" FT misc_feature 1342..1629 FT /note="HMMPfam hit to PF00338, Ribosomal protein S10p/S20e" FT misc_feature 1414..1461 FT /note="ScanRegExp hit to PS00361, Ribosomal protein S10 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 2044..2688 FT /transl_table=11 FT /gene="rplC" FT /locus_tag="BP3613" FT /product="50S ribosomal protein L3" FT /note="Similar to Escherichia coli 50S ribosomal protein L3 FT RplC SW:RL3_ECOLI (P02386) (209 aa) fasta scores: E(): FT 8.6e-48, 67.77% id in 211 aa, and to Neisseria meningitidis FT 50S ribosomal protein L3 NMA0129 TR:Q9JRH6 (EMBL:AL162752) FT (214 aa) fasta scores: E(): 2.4e-51, 69.48% id in 213 aa" FT /db_xref="GOA:Q7VTD3" FT /db_xref="InterPro:IPR019926" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTD3" FT /protein_id="CAE43871.1" FT /translation="MGRKVGMTRIFTEDGESIPVTVLDVSNNRVTQVKSLESDGYAAIQ FT VTYGTRRATRVVKPQAGHYAKAGAEAGSILKEFRLDPARAAEFAAGAVIAVESVFEAGQ FT QVDVTGTSIGKGFAGTIKRHNFGSQRASHGNSRSHRVPGSIGQAQDPGRIFPGKRMSGH FT MGDVTRTVQNLDVVRVDAERGLLMVKGAVPGHAGGDVIVRPAVKAPAKKGA" FT misc_feature 2053..2652 FT /note="HMMPfam hit to PF00297, Ribosomal protein L3" FT misc_feature 2341..2412 FT /note="ScanRegExp hit to PS00474, Ribosomal protein L3 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 2693..3310 FT /transl_table=11 FT /gene="rplD" FT /locus_tag="BP3614" FT /product="50S ribosomal protein L4" FT /note="Similar to Escherichia coli 50S ribosomal protein L4 FT RplD SW:RL4_ECOLI (P02388) (201 aa) fasta scores: E(): FT 5.9e-41, 58.33% id in 204 aa, and to Neisseria meningitidis FT 50S ribosomal protein L4 NMA0128 TR:Q9JRA2 (EMBL:AL162752) FT (206 aa) fasta scores: E(): 2.4e-51, 65.02% id in 203 aa" FT /db_xref="GOA:Q7VTD2" FT /db_xref="InterPro:IPR013005" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTD2" FT /protein_id="CAE43872.1" FT /translation="MDLKLLNDQGQAATFSAPDTIFGRDFNEALVHQIVVAFQANARSG FT NRAQKDRAEVKHSTKKPWRQKGTGRARAGMTSSPLWRGGGRAFPNSPEENFSQKVNKKM FT YRAGIRSILSQLAREDRVAVVDTFTLESPKTKLAAAKLKSLGLDSVLIITDNVDENVYL FT ATRNLPYVAVVEPRYADPLSLIHYKKVLITKPAIAQLEEMLG" FT misc_feature 2729..3301 FT /note="HMMPfam hit to PF00573, Ribosomal protein L4/L1 FT family" FT CDS 3307..3603 FT /transl_table=11 FT /gene="rplW" FT /locus_tag="BP3615" FT /product="50S ribosomal protein L23" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L23 RplW SW:RL23_ECOLI (P02424) (100 aa) fasta scores: E(): FT 1.5e-14, 54.94% id in 91 aa, and to Neisseria meningitidis FT 50S ribosomal protein L23 NMA0127 TR:Q9JX11 (EMBL:AL162752) FT (106 aa) fasta scores: E(): 6.9e-19, 63.83% id in 94 aa" FT /db_xref="GOA:Q7VTD1" FT /db_xref="InterPro:IPR013025" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTD1" FT /protein_id="CAE43873.1" FT /translation="MNAERLMQVILAPIVTEKATFVAEKNQQVAFRVVADATKPEIKAA FT VELLFKVQVESVQVLNRKGKVKRFGRFVGRRRNERKAYVALKDGQEIDFAEVK" FT misc_feature 3325..3600 FT /note="HMMPfam hit to PF00276, Ribosomal protein L23" FT CDS 3604..4431 FT /transl_table=11 FT /gene="rplB" FT /locus_tag="BP3616" FT /product="50S ribosomal protein L2" FT /note="Similar to Escherichia coli 50S ribosomal protein L2 FT RplB SW:RL2_ECOLI (P02387) (272 aa) fasta scores: E(): FT 2.4e-75, 67.03% id in 273 aa, and to Neisseria meningitidis FT 50S ribosomal protein L2 NMA0126 TR:Q9JX12 (EMBL:AL162752) FT (277 aa) fasta scores: E(): 1.5e-93, 81.98% id in 272 aa" FT /db_xref="GOA:Q7VTD0" FT /db_xref="InterPro:IPR014722" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTD0" FT /protein_id="CAE43874.1" FT /translation="MALVKVKPTSAGRRGMVKVVSPKLHKGAPHAALLEKKTRGSGRNN FT NGHITVRHRGGGHKQHYRVVDFRRNKDGIPAKVERLEYDPNRTAHIALLCYADGERRYI FT IAPRGLEVGATLISGIEAPIRAGNTLPIRNIPVGTTIHCIEMIPGKGAQMARSAGASAV FT LMAREGTYAQVRLRSGEVRRVHIQCRATIGEVGNEEHSLRQIGKAGAMRWRGVRPTVRG FT VAMNPIDHPHGGGEGRTGEAREPVSPWGTPAKGFKTRRNKRTNNMIVQRRKRK" FT misc_feature 3727..4425 FT /note="HMMPfam hit to PF00181, Ribosomal Proteins L2" FT misc_feature 4255..4290 FT /note="ScanRegExp hit to PS00467, Ribosomal protein L2 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 4444..4719 FT /transl_table=11 FT /gene="rpsS" FT /locus_tag="BP3617" FT /product="30S ribosomal protein S19" FT /note="Similar to Escherichia coli 30S ribosomal protein FT S19 RpsS SW:RS19_ECOLI (P02375) (91 aa) fasta scores: E(): FT 3.8e-27, 70.78% id in 89 aa, and to Neisseria meningitidis FT 30S ribosomal protein S19 NMA0125 TR:Q9JR96 (EMBL:AL162752) FT (92 aa) fasta scores: E(): 4.9e-30, 78.02% id in 91 aa" FT /db_xref="GOA:Q7VTC9" FT /db_xref="InterPro:IPR005732" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTC9" FT /protein_id="CAE43875.1" FT /translation="MSRSIKKGPFVDAHLIKKVDAAVAGKDKKPIKTWSRRSTVLPEFI FT GLTIAVHNGRQHVPIYINENMVGHKLGEFALTRTFKGHAADKKSKR" FT misc_feature 4450..4692 FT /note="HMMPfam hit to PF00203, Ribosomal protein S19" FT misc_feature 4600..4674 FT /note="ScanRegExp hit to PS00323, Ribosomal protein S19 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 4723..5052 FT /transl_table=11 FT /gene="rplV" FT /locus_tag="BP3618" FT /product="50S ribosomal protein L22" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L22 RplV SW:RL22_ECOLI (P02423) (110 aa) fasta scores: E(): FT 1e-23, 70.09% id in 107 aa, and to Neisseria meningitidis FT 50S ribosomal protein L22 NMA0124 TR:Q9JRD8 (EMBL:AL162752) FT (109 aa) fasta scores: E(): 1.7e-28, 75.92% id in 108 aa" FT /db_xref="GOA:Q7VTC8" FT /db_xref="InterPro:IPR005727" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTC8" FT /protein_id="CAE43876.1" FT /translation="METTAIIRGVHISAQKTRLVADLIRGKSVAQALNILTFSPKKAAV FT ILKKAVESAIANAEHNDGADIDELKVTTIFVDKAQSMKRFSARAKGRGNRIEKQTCHIT FT VKVGA" FT misc_feature 4735..5049 FT /note="HMMPfam hit to PF00237, Ribosomal protein L22p/L17e" FT misc_feature 4783..4806 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 4969..5043 FT /note="ScanRegExp hit to PS00464, Ribosomal protein L22 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 5062..5853 FT /transl_table=11 FT /gene="rpsC" FT /locus_tag="BP3619" FT /product="30S ribosomal protein S3" FT /note="Similar to Escherichia coli 30S ribosomal protein S3 FT RpsC SW:RS3_ECOLI (P02352) (232 aa) fasta scores: E(): FT 2e-50, 61.2% id in 232 aa, and to Neisseria meningitidis FT 30S ribosomal protein S3 NMA0123 TR:Q9JQX2 (EMBL:AL162752) FT (230 aa) fasta scores: E(): 4e-55, 71.12% id in 232 aa. CDS FT contains extra residues at the C-terminus in comparison to FT orthologues" FT /db_xref="GOA:Q7VTC7" FT /db_xref="InterPro:IPR008282" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTC7" FT /protein_id="CAE43877.1" FT /translation="MGQKIHPTGFRLAVTRNWTSRWFADDKAFGTMLAEDIRVREYLKK FT KLKSASVGRVIIERPAKNARITVYSARPGVVIGKRGEDIENLKADLQRLMGVPVHVNIE FT EIRKPETDAQLIADSISQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIA FT RTEWYREGRVPLHTLKANIDYGTSEAHTTYGVIGIKVWVYKGDMLANGELPPEAATPRE FT EERRPRRAPRGDRPDGARTGRPGGRGRGPRKADAAPAPEGE" FT misc_feature 5062..5247 FT /note="HMMPfam hit to PF00417, Ribosomal protein S3, FT N-terminal domain." FT misc_feature 5254..5397 FT /note="HMMPfam hit to PF00013, KH domain" FT misc_feature 5416..5667 FT /note="HMMPfam hit to PF00189, Ribosomal protein S3, FT C-terminal domain." FT misc_feature 5548..5652 FT /note="ScanRegExp hit to PS00548, Ribosomal protein S3 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 5856..6272 FT /transl_table=11 FT /gene="rplP" FT /locus_tag="BP3620" FT /product="50S ribosomal protein L16" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L16 RplP SW:RL16_ECOLI (P02414) (136 aa) fasta scores: E(): FT 2.1e-38, 75.73% id in 136 aa, and to Neisseria meningitidis FT and 50S ribosomal protein L16 NMA0122 TR:Q9JR26 FT (EMBL:AL162752) (138 aa) fasta scores: E(): 3.9e-43, 80.29% FT id in 137 aa" FT /db_xref="GOA:Q7VTC6" FT /db_xref="InterPro:IPR000114" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTC6" FT /protein_id="CAE43878.1" FT /translation="MLQPSRRKYRKEQKGRNTGLASRGTHVSFGEFGLKATGRGRLTAR FT QIEAARRAINRHIKRGGRIWIRIFPDKPISQKPAEVRMGNGKGNPEYWVAEIQPGKVLY FT EMEGVSEELAREAFRLAAAKLPISTTFVARHIGA" FT misc_feature 5856..6251 FT /note="HMMPfam hit to PF00252, Ribosomal protein L16" FT misc_feature 6030..6065 FT /note="ScanRegExp hit to PS00586, Ribosomal protein L16 FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 6099..6134 FT /note="ScanRegExp hit to PS00701, Ribosomal protein L16 FT signature 2. Confirmed by InterPro eMOTIF pattern match." FT CDS 6283..6474 FT /transl_table=11 FT /gene="rpmC" FT /locus_tag="BP3621" FT /product="50S ribosomal protein L29" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L29 RpmC SW:RL29_ECOLI (P02429) (63 aa) fasta scores: E(): FT 7.4e-10, 59.67% id in 62 aa, and to Neisseria meningitidis FT 50S ribosomal protein L29 NMA0121 SW:RL29_NEIMA (Q9JQX4) FT (63 aa) fasta scores: E(): 1.2e-10, 60.31% id in 63 aa" FT /db_xref="GOA:Q7VTC5" FT /db_xref="InterPro:IPR018254" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTC5" FT /protein_id="CAE43879.1" FT /translation="MKASELRSKDAAELGKELESLLKAQFGLRMQKATQQLANTSQLRN FT VRRDIARVRTLLTEKAGK" FT misc_feature 6289..6471 FT /note="HMMPfam hit to PF00831, Ribosomal L29 protein" FT misc_feature 6397..6441 FT /note="ScanRegExp hit to PS00579, Ribosomal protein L29 FT signature." FT CDS 6476..6757 FT /transl_table=11 FT /gene="rpsQ" FT /locus_tag="BP3622" FT /product="30S ribosomal protein S17" FT /note="Similar to Escherichia coli 30S ribosomal protein FT S17 RpsQ SW:RS17_ECOLI (P02373) (83 aa) fasta scores: E(): FT 4.1e-15, 57.14% id in 77 aa, and to Neisseria meningitidis FT 30S ribosomal protein S17 NMA0120 TR:Q9JQL7 (EMBL:AL162752) FT (87 aa) fasta scores: E(): 1.9e-18, 62.36% id in 93 aa" FT /db_xref="GOA:Q7VTC4" FT /db_xref="InterPro:IPR019979" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTC4" FT /protein_id="CAE43880.1" FT /translation="MSETQNTQVAKRQRTLVGKVVSNKMDKTVVVLVERRVKHPIFGKI FT IMRSAKYKAHDESNQYNEGDTVEIAEGRPISRSKAWRVVRLVEAARVI" FT misc_feature 6527..6733 FT /note="HMMPfam hit to PF00366, Ribosomal protein S17" FT misc_feature 6665..6703 FT /note="ScanRegExp hit to PS00056, Ribosomal protein S17 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(6924..7787) FT /transl_table=11 FT /locus_tag="BP3623" FT /product="putative hydrolase" FT /note="Similar to Acidovorax sp. SA1 FT D-(-)-3-hydroxybutyrate oligomer hydrolase TR:Q9F1T8 FT (EMBL:AB044565) (291 aa) fasta scores: E(): 1.3e-65, 58.8% FT id in 284 aa, and to Rickettsia conorii hypothetical FT protein RC0617 TR:AAL03155 (EMBL:AE008622) (290 aa) fasta FT scores: E(): 3e-15, 27.44% id in 266 aa" FT /db_xref="GOA:Q7VTC3" FT /db_xref="InterPro:IPR000073" FT /db_xref="UniProtKB/TrEMBL:Q7VTC3" FT /protein_id="CAE43881.1" FT /translation="MSCQHLPASHYARCAGRELHYVEWGRRDAPPLVMWHGLARTGRDF FT DDLAQALADRYRIICPDTIGRGLSQWSPRPAQEYCLDFYATLACELLDRLGLSGVRWIG FT TSMGGAIGMHGAATALRGRITHLVLNDIGPTLPAPAIERILAYAGAPPAFDTVGELEAW FT LRSAYRPYGWLSDAQWRRMAETSIRRLPDGRVTTHYDPAIVGQFRHHPTDYEPWSEYDS FT LRIPVLLLRGADSDLLLPEVAHAMTRRGPRARRIDFPDCGHAPALNVTAQIQAIADFLA FT APAALA" FT misc_feature complement(6948..7622) FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold" FT CDS complement(7874..9301) FT /transl_table=11 FT /locus_tag="BP3624" FT /product="putative aldehyde dehydrogenase" FT /note="Similar to Escherichia coli succinate-semialdehyde FT dehydrogenase [NADP+] GabD SW:GABD_ECOLI (P25526) (482 aa) FT fasta scores: E(): 3.4e-75, 43.12% id in 473 aa, and to FT Acinetobacter sp. 6-oxohexanoate dehydrogenase ChnE FT TR:BAB61739 (EMBL:AB006902) (477 aa) fasta scores: E(): FT 1.2e-117, 60.75% id in 474 aa" FT /db_xref="GOA:Q7VTC2" FT /db_xref="HSSP:1A4S" FT /db_xref="InterPro:IPR016162" FT /db_xref="UniProtKB/TrEMBL:Q7VTC2" FT /protein_id="CAE43882.1" FT /translation="MYEQLALYIDGEFLTGDGRRTQDVVNPATLEVLGQLPHASEADLD FT RALAAAQRAFETWKRTSPMERAAILRKVGQLSRDRAQEIGRNMTLDQGKPLAEAVGEVA FT SCSEHADWHAEECRRIYGRVIPPRNPDVRQFVVREPIGVCAAFTPWNFPYNQAIRKIAA FT ALGAGCTVVLKGPEDSPSAVMAIARMFHEAGLPKGCLNIVWGEPAKISDYLIRSPIVRK FT VSFTGSVPVGKQLAALAGAHMKRVTMELGGHSPVLVFDDADVDRAAEMLARFKVRNAGQ FT VCVSPTRFYVQNGAYEQFLARFTEVLKNIKVGDGLEKGTDMGPLAHERRVPAMSTFVDD FT ALKHGGKVVLGGDAPDRKGYFFSPTVVTELPDNAMLMTEEPFGPLAPVVRFTDTDEVLR FT RANSLPFGLSSYVFTNSLKTATKVSNALEAGMVNINHFGSALAETPFGGIKDSGIGSEG FT GLETFDGYLVTKYITHI" FT misc_feature complement(7880..9268) FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family" FT CDS 10194..10562 FT /transl_table=11 FT /gene="rplN" FT /locus_tag="BP3626" FT /product="50S ribosomal protein L14" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L14 RplN SW:RL14_ECOLI (P02411) (123 aa) fasta scores: E(): FT 3.7e-35, 76.42% id in 123 aa, and to Neisseria meningitidis FT 50S ribosomal protein L14 NMA0119 TR:Q9JQY4 (EMBL:AL162752) FT (122 aa) fasta scores: E(): 2.2e-40, 87.7% id in 122 aa" FT /db_xref="GOA:Q7VTC1" FT /db_xref="HSSP:1C04" FT /db_xref="InterPro:IPR019972" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTC1" FT /protein_id="CAE43883.1" FT /translation="MIQMQTTLDVADNTGARAVMCIKVLGGSKRRYAGIGDIIKVSVKD FT AAPRGRVKKGEIYNAVVVRTAKGVRRKDGSLIRFGGNAAVLLNAKLEPIGTRIFGPVTR FT ELRTERFMKIVSLAPEVL" FT misc_feature 10194..10559 FT /note="HMMPfam hit to PF00238, Ribosomal protein L14p/L23e" FT misc_feature 10371..10451 FT /note="ScanRegExp hit to PS00049, Ribosomal protein L14 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 10573..10893 FT /transl_table=11 FT /gene="rplX" FT /locus_tag="BP3627" FT /product="50S ribosomal protein L24" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L24 RplX SW:RL24_ECOLI (P02425) (103 aa) fasta scores: E(): FT 6e-18, 58.58% id in 99 aa, and to Neisseria meningitidis FT 50S ribosomal protein L24 NMA0118 TR:Q9JQQ7 (EMBL:AL162752) FT (107 aa) fasta scores: E(): 4.6e-18, 52.77% id in 108 aa" FT /db_xref="GOA:Q7VTC0" FT /db_xref="InterPro:IPR005825" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTC0" FT /protein_id="CAE43884.1" FT /translation="MNNIRKGDEVIVLTGRDKKRRGTVLARVDADHVLVEGVNVVKKHV FT KANPMANNPGGIVEKTMPIHVSNVALFNPATGKGDRVGVQEVDGRKVRVFRSNGAVVGA FT KA" FT misc_feature 10582..10752 FT /note="HMMPfam hit to PF00467, KOW motif" FT CDS 10906..11445 FT /transl_table=11 FT /gene="rplE" FT /locus_tag="BP3628" FT /product="50S ribosomal protein L5" FT /note="Similar to Escherichia coli 50S ribosomal protein l5 FT RplE SW:RL5_ECOLI (P02389) (178 aa) fasta scores: E(): FT 1.5e-48, 63.84% id in 177 aa, and to Neisseria meningitidis FT 50S ribosomal protein L5 NMB0154 TR:Q9K1I4 (EMBL:AE002373) FT (179 aa) fasta scores: E(): 1.7e-55, 78.09% id in 178 aa" FT /db_xref="GOA:Q7VTB9" FT /db_xref="InterPro:IPR002132" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTB9" FT /protein_id="CAE43885.1" FT /translation="MSRLQEFYKSKVVADLQAKFGYKCVMEVPRITKITLNMGVSEAVA FT DKKVIEHAVSDLTKISGQKPVVTKTRKAIAGFKIRENYPIGCMVTLRGQRMYEFLDRLV FT AVALPRVRDFRGISGRAFDGRGNYNIGVKEQIIFPEIEYDKIDALRGLNISITTTAKTD FT DEAKALLTAFSFPFRN" FT misc_feature 10978..11145 FT /note="HMMPfam hit to PF00281, Ribosomal protein L5" FT misc_feature 11074..11124 FT /note="ScanRegExp hit to PS00358, Ribosomal protein L5 FT signature." FT misc_feature 11155..11439 FT /note="HMMPfam hit to PF00673, ribosomal L5P family FT C-terminus" FT CDS 11458..11763 FT /transl_table=11 FT /gene="rpsN" FT /locus_tag="BP3629" FT /product="30S ribosomal protein S14" FT /note="Similar to Escherichia coli 30S ribosomal protein FT S14 RpsN SW:RS14_ECOLI (P02370) (100 aa) fasta scores: E(): FT 1.8e-22, 64% id in 100 aa, and to Neisseria meningitidis FT 30S ribosomal protein S14 NMA0116 TR:Q9JQR3 (EMBL:AL162752) FT (101 aa) fasta scores: E(): 1.1e-24, 65.34% id in 101 aa" FT /db_xref="GOA:Q7VTB8" FT /db_xref="InterPro:IPR018271" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTB8" FT /protein_id="CAE43886.1" FT /translation="MAKLSLINRDIKRAKLADKYAAKRAELKAIIDDQSKTDEERYQAR FT LKLQQLPRNANPTRQRNRCVVTGRPRGVFRKFGLTRHKLREMAMKGEVPGMTKASW" FT misc_feature 11458..11760 FT /note="HMMPfam hit to PF00253, Ribosomal protein S14p/S29e" FT CDS 11774..12169 FT /transl_table=11 FT /gene="rpsH" FT /locus_tag="BP3630" FT /product="30S ribosomal protein S8" FT /note="Similar to Escherichia coli 30S ribosomal protein S8 FT RpsH SW:RS8_ECOLI (P02361) (129 aa) fasta scores: E(): FT 1.2e-31, 66.92% id in 130 aa, and to Neisseria meningitidis FT 30S ribosomal protein S8 NMA0115 TR:Q9JR58 (EMBL:AL162752) FT (130 aa) fasta scores: E(): 1.2e-32, 71.75% id in 131 aa" FT /db_xref="GOA:Q7VTB7" FT /db_xref="HSSP:1AN7" FT /db_xref="InterPro:IPR000630" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTB7" FT /protein_id="CAE43887.1" FT /translation="MSMSDPIADMLTRIRNAQQVDKTTVTMPASKLKVAIATVLKDEGY FT IDGYSVKGTQAKPELEITLKYYAGRPVIERIERVSRPGLRIYKGRTSIPQVMNGLGVAI FT VSTSRGVMTDRKARANGVGGEVLCYVA" FT misc_feature 11786..12166 FT /note="HMMPfam hit to PF00410, Ribosomal protein S8" FT misc_feature 12074..12127 FT /note="ScanRegExp hit to PS00053, Ribosomal protein S8 FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 12155..12166 FT /note="ScanRegExp hit to PS00294, Prenyl group binding site FT (CAAX box)." FT CDS 12180..12713 FT /transl_table=11 FT /gene="rplF" FT /locus_tag="BP3631" FT /product="50S ribosomal protein L6" FT /note="Similar to Escherichia coli 50S ribosomal protein L6 FT RplF SW:RL6_ECOLI (P02390) (176 aa) fasta scores: E(): FT 3.2e-34, 57.95% id in 176 aa, and to Neisseria meningitidis FT 50S ribosomal protein L6 NMB0157 TR:Q9K1I3 (EMBL:AE002373) FT (177 aa) fasta scores: E(): 4.3e-37, 60.45% id in 177 aa" FT /db_xref="GOA:Q7VTB6" FT /db_xref="HSSP:1C04" FT /db_xref="InterPro:IPR019906" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTB6" FT /protein_id="CAE43888.1" FT /translation="MSRIAKYPVELPKGVEASIQPDQITVKGPLGILVQSLTGDVNVAQ FT EDGKLTFVVANDSRHANAMSGTLRALVANMVTGVSKGFERKLNLVGVGYRAQIQGDAVK FT LQLGFSHDVVHQLPAGVKAECPTQTEIVIKGPNKQVVGQVAAEIRKYREPEPYKGKGVR FT YADERVVIKETKKK" FT misc_feature 12210..12710 FT /note="HMMPfam hit to PF00347, Ribosomal protein L6" FT misc_feature 12639..12665 FT /note="ScanRegExp hit to PS00525, Ribosomal protein L6 FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT CDS 12735..13097 FT /transl_table=11 FT /gene="rplR" FT /locus_tag="BP3632" FT /product="50S ribosomal protein L18" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L18 RplR SW:RL18_ECOLI (P02419) (117 aa) fasta scores: E(): FT 3.9e-19, 57.5% id in 120 aa, and to Neisseria meningitidis FT 50S ribosomal protein L18 NMA0113 TR:Q9JQQ6 (EMBL:AL162752) FT (117 aa) fasta scores: E(): 1.9e-25, 70% id in 120 aa" FT /db_xref="GOA:Q7VTB5" FT /db_xref="HSSP:1ILY" FT /db_xref="InterPro:IPR004389" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTB5" FT /protein_id="CAE43889.1" FT /translation="MDKKVSRLRRAVPTRRKIAQLRVHRLSVFRSNLHIYANIISPEGD FT RVLVSASTLEAEVRAQLGGAGKGGNATAAALVGKRVAEKAKAAGIELVAFDRSGFRYHG FT RVKALAEAAREAGLKF" FT misc_feature 12735..13094 FT /note="HMMPfam hit to PF00861, Ribosomal L18p/L5e family" FT CDS 13113..13637 FT /transl_table=11 FT /gene="rpsE" FT /locus_tag="BP3633" FT /product="30S ribosomal protein S5" FT /note="Similar to Escherichia coli 30S ribosomal protein S5 FT RpsE SW:RS5_ECOLI (P02356) (166 aa) fasta scores: E(): FT 5.7e-36, 65.64% id in 163 aa, and to Neisseria meningitidis FT 30S ribosomal protein S5 NMA0112 TR:Q9JQP3 (EMBL:AL162752) FT (172 aa) fasta scores: E(): 3.6e-41, 68.26% id in 167 aa" FT /db_xref="GOA:Q7VTB4" FT /db_xref="HSSP:1FKA" FT /db_xref="InterPro:IPR000851" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTB4" FT /protein_id="CAE43890.1" FT /translation="MATKVQGKHAAEKENDDGLREKMIAVNRVSKVVKGGRTMSFAALS FT VVGDGDGRIGMGKGKAREVPVSVQKAMEQARRGMFKVALKNGTLHHTVVGKHGASTVLI FT SPAAEGTGVIAGGPMRAIFEVMGVRNVVAKSLGSSNPYNLVRATLNGLRASLTPAEVAA FT KRGKSVEEILG" FT misc_feature 13179..13565 FT /note="HMMPfam hit to PF00333, Ribosomal protein S5" FT CDS 13641..13826 FT /transl_table=11 FT /gene="rpmD" FT /locus_tag="BP3634" FT /product="50S ribosomal protein L30" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L30 RpmD SW:RL30_ECOLI (P02430) (58 aa) fasta scores: E(): FT 2e-07, 49.12% id in 57 aa, and to Streptomyces coelicolor FT 50S ribosomal protein L30 SCD31.45 SW:RL30_STRCO (P46789) FT (60 aa) fasta scores: E(): 1.1e-10, 57.14% id in 56 aa" FT /db_xref="GOA:Q7VTB3" FT /db_xref="HSSP:1BXY" FT /db_xref="InterPro:IPR000517" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTB3" FT /protein_id="CAE43891.1" FT /translation="MAQKQIKVTLVRSVIGTKQSHRDTIRGLGLRRINSSRVLVDTPEV FT RGMIHKVGYLVSVSEA" FT misc_feature 13650..13808 FT /note="HMMPfam hit to PF00327, Ribosomal protein L30p/L7e" FT CDS 13836..14276 FT /transl_table=11 FT /gene="rplO" FT /locus_tag="BP3635" FT /product="50S ribosomal protein L15" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L15 RplO SW:RL15_ECOLI (P02413) (144 aa) fasta scores: E(): FT 3.5e-28, 61.26% id in 142 aa, and to Neisseria meningitidis FT 50S ribosomal protein L15 NMB0161 TR:Q9K1I2 (EMBL:AE002373) FT (144 aa) fasta scores: E(): 1.9e-31, 67.14% id in 140 aa" FT /db_xref="GOA:Q7VTB2" FT /db_xref="InterPro:IPR005749" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTB2" FT /protein_id="CAE43892.1" FT /translation="MSDIQLNTLKPAEGSKHAKRRVGRGIGSGLGKTAGRGHKGQKSRS FT GGFHKVGFEGGQMPLQRRLPKRGFTPLGQHLYAEVRLSELQLMEAEEIDVQALKAAGVV FT GQSVRYAKVIKSGELSRKVVLRGITATAGARAAIEAAGGSLA" FT misc_feature 13845..14147 FT /note="HMMPfam hit to PF01305, Ribosomal protein L15 amino FT terminal region" FT misc_feature 14169..14264 FT /note="HMMPfam hit to PF00256, Ribosomal protein L15" FT CDS 14291..15616 FT /transl_table=11 FT /gene="secY" FT /gene_synonym="prlA" FT /locus_tag="BP3636" FT /product="preprotein translocase SecY subunit" FT /note="Similar to Escherichia coli preprotein translocase FT SecY subunit SW:SECY_ECOLI (P03844) (443 aa) fasta scores: FT E(): 9.5e-112, 66.51% id in 442 aa, and to Pseudomonas FT aeruginosa SecY secretion protein PA4243 TR:Q9HWF5 FT (EMBL:AE004841) (442 aa) fasta scores: E(): 1.2e-109, FT 64.62% id in 441 aa" FT /db_xref="GOA:Q7VTB1" FT /db_xref="InterPro:IPR002208" FT /db_xref="UniProtKB/TrEMBL:Q7VTB1" FT /protein_id="CAE43893.1" FT /translation="MAKAQALGKTGARYGDLKRRLVFLVLALVVYRLGTHIPVPGINPD FT ALADLFRQHEGGILGLFNMFSGGALSRFSIFALGIMPYISTSIIMQLMSVVVPSLEALK FT KEGEAGRRKITQYTRYGTVVLALVQAVGISVALESQPGLVIDPGMLFRFTTVVTLVTGT FT MFVMWLGEQITERGLGNGISILIFAGIVAGLPSALAGLLDLVRTNSMSVLSALFIVALV FT VLVTAFVVFVERGQRKITVNYAKRQVGNKVYGGQSSHLPLKLNMAGVIPPIFASSIILF FT PATITSWFSSGERMAWLRDLAAALEPRQPLYITLYSVAIIFFCFFYTALVFNSRETADN FT LKKSGAFVPGIRPGEQTARYIDKILMRLTLAGAIYITLVCLLPEFLVMRWNVPFYFGGT FT SLLIIVVVTMDFMAQVQAYMMSHQYDSLLKKANFKGSGLPMR" FT misc_feature join(14351..14419,14462..14530,14651..14704,14732..14800, FT 14819..14887,14915..14983,15095..15163,15221..15289, FT 15380..15448,15461..15529) FT /note="10 probable transmembrane helices predicted for FT BP3636 by TMHMM2.0 at aa 21-43, 58-80, 121-138, 148-170, FT 177-199, 209-231, 269-291, 311-333, 364-386 and 391-413" FT misc_feature 14510..15532 FT /note="HMMPfam hit to PF00344, eubacterial secY protein" FT misc_feature 14792..14845 FT /note="ScanRegExp hit to PS00756, Protein secY signature FT 2." FT CDS 15626..15844 FT /transl_table=11 FT /gene="infA" FT /locus_tag="BP3637" FT /product="translation initiation factor IF-1" FT /note="Similar to Escherichia coli translation initiation FT factor IF-1 InfA SW:IF1_ECOLI (P02998) (71 aa) fasta FT scores: E(): 5.3e-19, 74.64% id in 71 aa, and to Neisseria FT meningitidis translation initiation factor IF-1 NMA0108 FT SW:IF1_NEIMA (Q9JR12) (72 aa) fasta scores: E(): 8.9e-24, FT 84.72% id in 72 aa. Also similar to BP1019, 54.167% FT identity (54.167% ungapped) in 72 aa overlap." FT /db_xref="GOA:Q7VTB0" FT /db_xref="InterPro:IPR004368" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTB0" FT /protein_id="CAE43894.1" FT /translation="MSKDDVIQMQGEVLENLPNATFRVKLENGHVVLGHISGKMRMHYI FT RILPGDKVTVELTPYDLTRARIVFRSK" FT misc_feature 15629..15841 FT /note="HMMPfam hit to PF00575, S1 RNA binding domain" FT misc_feature 15800..15829 FT /note="ScanRegExp hit to PS00215, Mitochondrial energy FT transfer proteins signature." FT CDS 15879..15992 FT /transl_table=11 FT /gene="rpmJ" FT /locus_tag="BP3638" FT /product="50S ribosomal protein l36" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L36 RpmJ SW:RL36_ECOLI (P21194) (38 aa) fasta scores: E(): FT 8.8e-12, 71.05% id in 38 aa, and to Vibrio cholerae 50S FT ribosomal protein L36 VC2575 SW:RL36_VIBCH (P78001) (37 aa) FT fasta scores: E(): 1.5e-13, 83.78% id in 37 aa" FT /db_xref="GOA:Q7VTA9" FT /db_xref="HSSP:1DFE" FT /db_xref="InterPro:IPR000473" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTA9" FT /protein_id="CAE43895.1" FT /translation="MKVMASVKRICRNCKVIKRHGVVRVICTDPRHKQRQG" FT misc_feature 15879..15989 FT /note="HMMPfam hit to PF00444, Ribosomal protein L36" FT misc_feature 15909..15986 FT /note="ScanRegExp hit to PS00828, Ribosomal protein L36 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 16034..16399 FT /transl_table=11 FT /gene="rpsM" FT /locus_tag="BP3639" FT /product="30S ribosomal protein S13" FT /note="Similar to Escherichia coli 30S ribosomal protein FT S13 RpsM SW:RS13_ECOLI (P02369) (117 aa) fasta scores: E(): FT 1.3e-25, 60.17% id in 113 aa, and to Xanthomonas campestris FT 30S ribosomal protein S13 RpsM SW:RS13_XANCP (Q9Z3F0) (117 FT aa) fasta scores: E(): 1.6e-29, 66.08% id in 115 aa" FT /db_xref="GOA:Q7VTA8" FT /db_xref="InterPro:IPR018269" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTA8" FT /protein_id="CAE43896.1" FT /translation="MARIAGINIPPQQHAEIGLTAIFGIGRTRARKICEAAGVPVTKKV FT KDLTDAELERIREHIGVFAVEGDLRREVQLSIKRLIDLGTYRGMRHKRGLPVRGQRTRT FT NARTRKGPRRAAASLKK" FT misc_feature 16040..16357 FT /note="HMMPfam hit to PF00416, Ribosomal protein S13/S18" FT misc_feature 16292..16333 FT /note="ScanRegExp hit to PS00646, Ribosomal protein S13 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 16415..16816 FT /transl_table=11 FT /gene="rpsK" FT /locus_tag="BP3640" FT /product="30S ribosomal protein S11" FT /note="Similar to Escherichia coli 30S ribosomal protein FT S11 RpsK SW:RS11_ECOLI (P02366) (128 aa) fasta scores: E(): FT 1.1e-35, 73.17% id in 123 aa, and to Neisseria meningitidis FT 30S ribosomal protein S11 NMA0105 TR:Q9JQR2 (EMBL:AL162752) FT (131 aa) fasta scores: E(): 6.2e-42, 86.46% id in 133 aa" FT /db_xref="GOA:Q7VTA7" FT /db_xref="InterPro:IPR018102" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTA7" FT /protein_id="CAE43897.1" FT /translation="MAKASTSGASRVRKKVKKNVSDGIAHVHASFNNTIITITDRQGNA FT LSWATSGGAGFKGSRKSTPFAAQVAAETAGRVAMEYGIKTLEVRIKGPGPGRESSVRAL FT NALGIKISSIADITPVPHNGCRPPKRRRI" FT misc_feature 16481..16810 FT /note="HMMPfam hit to PF00411, Ribosomal protein S11" FT misc_feature 16715..16783 FT /note="ScanRegExp hit to PS00054, Ribosomal protein S11 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 16828..17451 FT /transl_table=11 FT /gene="rpsD" FT /gene_synonym="ramA" FT /locus_tag="BP3641" FT /product="30S ribosomal protein S4" FT /note="Similar to Escherichia coli 30s ribosomal protein S4 FT RpsD SW:RS4_ECOLI (P02354) (205 aa) fasta scores: E(): FT 9.1e-49, 64.56% id in 206 aa, and to Neisseria meningitidis FT 30S ribosomal protein S4 NMA0104 TR:Q9JRD0 (EMBL:AL162752) FT (206 aa) fasta scores: E(): 2.5e-56, 72.94% id in 207 aa" FT /db_xref="GOA:P0A4C5" FT /db_xref="InterPro:IPR002942" FT /db_xref="UniProtKB/Swiss-Prot:P0A4C5" FT /protein_id="CAE43898.1" FT /translation="MARYIGPKCKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTS FT GARTSDYGLQLREKQKLKRMYGVLEKQFRKYFVEAERRRGNTGETLIQLLESRLDNVVY FT RMGFGSTRAEARQLVSHRAIELNGHTADIASMLVKAGDVISIREKAKKQGRIRESLDLA FT ASIGLPQWVEVDASKMTGTFKSAPDRADVARDVNESMVVELYSR" FT misc_feature 16828..17115 FT /note="HMMPfam hit to PF00163, Ribosomal protein S4/S9 FT N-terminal domain" FT misc_feature 17110..17184 FT /note="ScanRegExp hit to PS00632, Ribosomal protein S4 FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 17116..17259 FT /note="HMMPfam hit to PF01479, S4 domain" FT CDS 17665..18651 FT /transl_table=11 FT /gene="rpoA" FT /locus_tag="BP3642" FT /product="DNA-directed RNA polymerase alpha chain" FT /EC_number="2.7.7.6" FT /note="Previously sequenced as Bordetella pertussis FT DNA-directed RNA polymerase alpha chain RpoA SW:RPOA_BORPE FT (P37368) (328 aa) fasta scores: E(): 9.3e-122, 100% id in FT 328 aa. Similar to Neisseria meningitidis DNA-directed RNA FT polymerase alpha chain RpoA SW:RPOA_NEIMA (Q9JR06) (328 aa) FT fasta scores: E(): 2.6e-85, 70.94% id in 327 aa" FT /db_xref="GOA:P0A4E5" FT /db_xref="HSSP:1LB2" FT /db_xref="InterPro:IPR011773" FT /db_xref="UniProtKB/Swiss-Prot:P0A4E5" FT /protein_id="CAE43899.1" FT /translation="MSTQGFLKPRSIEVEPVGAHHAKIVMEPFERGYGHTLGNALRRIL FT LSSMTGYAPTEVQMTGVVHEYSTIAGVREDVVDILLNLKGVVFKLHNRDEVTLVLRKNG FT AGAVVASDIELPHDVEIINPDHLICNLTDAGKIEMQVKVEKGRGYVPGNVRALSEDRTH FT TIGRIVLDASFSPVRRVSYAVESARVEQRTDLDKLVLDIETNGVISPEEAVRQAARILM FT DQISVFAALEGAGDAYEPPVRGTPQIDPVLLRPVDDLELTVRSANCLKAENIYYIGDLI FT QRTENELLKTPNLGRKSLNEIKEVLAARGLTLGMKLENWPPLGLERP" FT misc_feature 17725..18588 FT /note="HMMPfam hit to PF01000, Bacterial RNA polymerase, FT alpha chain" FT CDS 18810..19205 FT /transl_table=11 FT /locus_tag="BP3643" FT /product="50S ribosomal protein L17" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L17 RplQ SW:RL17_ECOLI (P02416) (127 aa) fasta scores: E(): FT 5.3e-32, 68.5% id in 127 aa, and to Neisseria meningitidis FT 50S ribosomal protein L17 NMB0169 TR:Q9K1I1 (EMBL:AE002374) FT (122 aa) fasta scores: E(): 2.5e-35, 75.41% id in 122 aa" FT /db_xref="GOA:Q7VTA6" FT /db_xref="HSSP:1GD8" FT /db_xref="InterPro:IPR000456" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTA6" FT /protein_id="CAE43900.1" FT /translation="MRHGNGLRKLNRTSSHRLAMFRNMAVSLITHEAIKTTLPKAKELR FT RVIEPLITLGKEPTLANKRLAFARLRDRDAVVKLFAEIGPRYANRNGGYTRVLKMGFRQ FT GDNAPMAFMELVDRPEVDASEADSDAE" FT misc_feature 18867..19157 FT /note="HMMPfam hit to PF01196, Ribosomal protein L17" FT misc_feature 18909..18977 FT /note="ScanRegExp hit to PS01167, Ribosomal protein L17 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(19118..19684) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3644" FT /product="histidine triad protein (pseudogene)" FT /note="Pseudogene. An internal deletion (around codon 140) FT removed the stop codon for this CDS. Hence its C-terminal FT region is extended into C-terminus of the convergent CDS, FT BP3643. N-terminus is similar to the N-terminal regions of FT Halobacterium sp. histidine triad protein VNG2186G FT TR:Q9HNA0 (EMBL:AE005106) (142 aa) fasta scores: E(): FT 5e-10, 38.73% id in 111 aa, and Salmonella typhimurium LT2 FT putative diadenosine tetraphosphate STM3167 TR:AAL22041 FT (EMBL:AE008845) (151 aa) fasta scores: E(): 9.3e-10, 34.74% FT id in 118 aa." FT /db_xref="PSEUDO:CAE43901.1" FT variation complement(19265..19267) FT /note="internal deletion in pertussis relative to FT parapertussis and bronchiseptica" FT misc_feature complement(19382..19672) FT /note="HMMPfam hit to PF01230, HIT family" FT CDS 19791..20132 FT /transl_table=11 FT /gene="cutA" FT /gene_synonym="cycY" FT /gene_synonym="cutA1" FT /locus_tag="BP3645" FT /product="putative periplasmic divalent cation tolerance FT protein" FT /note="Similar to Escherichia coli, and Escherichia coli FT O157:H7 periplasmic divalent cation tolerance protein CutA FT or CycY or CutA1 or b4137 or z5742 or ecs5118 FT SWALL:CUTA_ECOLI (SWALL:P36654) (112 aa) fasta scores: E(): FT 1.3e-10, 38.54% id in 96 aa, and to Methanopyrus kandleri FT uncharacterized protein implicated in tolerance to divalent FT cations CutA or mk1492 SWALL:Q8TVA0 (EMBL:AE010440) (102 FT aa) fasta scores: E(): 2.1e-15, 50% id in 100 aa" FT /db_xref="GOA:Q7VTA5" FT /db_xref="HSSP:1NAQ" FT /db_xref="InterPro:IPR004323" FT /db_xref="UniProtKB/TrEMBL:Q7VTA5" FT /protein_id="CAE43902.1" FT /translation="MLRDDDVVLVISNAPDMLLAKRMAHVLVEDGLAACVNLGAPVLSV FT YRWKGEVEGADEIPLWIKTTYARHQAVVQTLAQLHPYEVPEIIVLPVIGGIASYLDWVR FT EQSSGVDSQ" FT CDS 20143..22080 FT /transl_table=11 FT /locus_tag="BP3646" FT /product="thiol:disulfide interchange protein" FT /note="Similar to Pseudomonas aeruginosa thiol:disulfide FT interchange protein DipZ SW:DSD1_PSEAE (Q9HUW5) (591 aa) FT fasta scores: E(): 6.8e-53, 41.54% id in 609 aa, and to FT Neisseria meningitidis thiol:disulfide interchange protein FT NMA1719 SW:DSBD_NEIMA (Q9JTL9) (601 aa) fasta scores: E(): FT 2.5e-63, 37.76% id in 617 aa" FT /db_xref="GOA:Q7VTA4" FT /db_xref="HSSP:1JPE" FT /db_xref="InterPro:IPR013766" FT /db_xref="UniProtKB/TrEMBL:Q7VTA4" FT /protein_id="CAE43903.1" FT /translation="MMQYGHASATGHGASATGRAAAAGRWLAWMLALALVLFARPAAAL FT TEDDFLPPEQAFVFSAAMADPATLVLNYRIAPEYYMYRERFGLSASPAQAVTLGEAAYP FT QGKVKYDPTFDKDMEVFYGTVAVRVPLSQGNGQPFTLTVTSQGCADAGLCYPPMDNTVQ FT LTPVTGGYALAAGTASAPQGGGTFDSLLEAGDTRLADFIGGGGWLKTAGVFLLLGMLLA FT FTPCVLPMVPILSSIVLGGAQAQRPSRWRGLGLAAAYVFGMSVVYTALGVAAGLSGAGL FT AAWLQTPWILSLFAILLAVLALAMFGAFTFQMPAGLQARLSERSNRIPGGRVTGALVMG FT ALSALIVGPCVAAPLAGALLYISQTGDVILGGAALFAMAWGMGIPLLLVGASAGTLLPR FT TGPWMESVKRVFGMLLLGTAWWMLIPVVPTWVQMLGWSFLAVVGAVMLRAFDALPAGSG FT APRMFAKGLGLLLALAGAAWLIGALSGGRDVLAPLSHLAARAPAGGAVAAAGPAAVDKT FT RFVRVRSNAELDALLARSTQPVMLDFYADWCVSCREMEHFTFSDPTVAARMSQMLLVQA FT DVTKNNADDRALLKRFRLFGPPGIMFFEPGGKLIEDIRVVGFQDARRFAGVLEQVADRS FT GAPGPAQAGS" FT misc_feature join(20203..20271,20791..20859,20896..20964,21007..21075, FT 21148..21216,21244..21312,21370..21429,21439..21492, FT 21529..21597) FT /note="9 probable transmembrane helices predicted for FT BP3646 by TMHMM2.0 at aa 21-43, 217-239, 252-274, 289-311, FT 336-358, 368-390, 410-429, 433-450 and 463-485" FT misc_feature 20782..21414 FT /note="HMMPfam hit to PF02683, Cytochrome C biogenesis FT protein transmembrane region" FT misc_feature 21691..21807 FT /note="HMMPfam hit to PF00085, Thioredoxin" FT misc_feature 21760..21816 FT /note="ScanRegExp hit to PS00194, Thioredoxin family active FT site. Confirmed by InterPro eMOTIF pattern match." FT CDS 22202..23158 FT /transl_table=11 FT /locus_tag="BP3647" FT /product="putative membrane protein" FT /note="Similar to Bacillus halodurans hypothetical protein FT BH1741 TR:Q9KC33 (EMBL:AP001513) (306 aa) fasta scores: FT E(): 3.1e-22, 33.21% id in 283 aa, and to Pseudomonas FT aeruginosa hypothetical protein PA4287 TR:Q9HWB3 FT (EMBL:AE004845) (296 aa) fasta scores: E(): 2e-16, 31.59% FT id in 307 aa" FT /db_xref="GOA:Q7VTA3" FT /db_xref="InterPro:IPR000620" FT /db_xref="UniProtKB/TrEMBL:Q7VTA3" FT /protein_id="CAE43904.1" FT /translation="MSTAIASPANVGRVYLQLLLVMAAWGVNLVAVKYLTFHMDVQVVA FT AVRIVVAFVAVSAILLWRLHGVPRLSLRQFGWLACAGLLVVYAHQILLVNALRLTPAAN FT ATLIMATSPLFSVVLAAFFYRERLTASRIGGAALGLGGVALVVAGGDGVLASVGRGDVL FT ALCAVIVFVIGGLIIQRVSRALDPLTILWYMYLVGAVTLSAHAAFSPATYLASSWTLEP FT WPWLVVLFSSVIASGVSNLLWNAGIARLGMSRAAMFVNWLPIFGLLAAAVFLGERITAL FT HFAGLACVLSGTWLGLRTAPAPAAGQADARPARARRA" FT misc_feature join(22241..22309,22322..22390,22424..22492,22505..22573, FT 22598..22666,22679..22747,22766..22825,22868..22936, FT 22970..23023,23033..23092) FT /note="10 probable transmembrane helices predicted for FT BP3647 by TMHMM2.0 at aa 41-63, 68-90, 102-124, 129-151, FT 160-182, 187-209, 216-235, 250-272, 284-301 and 305-324" FT misc_feature 22268..22645 FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6" FT misc_feature 22706..23095 FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6" FT CDS complement(23155..24171) FT /transl_table=11 FT /gene="hemB" FT /locus_tag="BP3648" FT /product="putative delta-aminolevulinic acid dehydratase" FT /EC_number="4.2.1.24" FT /note="Similar to Pseudomonas aeruginosa FT delta-aminolevulinic acid dehydratase HemB or Pa5243 FT SW:HEM2_PSEAE (Q59643) (337 aa) fasta scores: E(): 1.2e-78, FT 65.15% id in 330 aa, and to Neisseria meningitidis FT delta-aminolevulinic acid dehydratase NMB0801 TR:Q9K025 FT (EMBL:AE002433) (333 aa) fasta scores: E(): 2.1e-86, 71.77% FT id in 326 aa" FT /db_xref="GOA:Q7VTA2" FT /db_xref="HSSP:1B4K" FT /db_xref="InterPro:IPR013785" FT /db_xref="UniProtKB/TrEMBL:Q7VTA2" FT /protein_id="CAE43905.1" FT /translation="MKPQIISAAFPVSRPRRLRRDDFTRRLVRENTLTANDLIYPVFVT FT EGKGIQQAVPSLPGVVRYSLDTLLPVAEQCVKLGIPVLSLFPAIEPALKTPDGIEAANP FT EGLIPRVVGELKKRFPELGVLTDVALDPYTSHGQDGVIDPAGYVLNEPTVEILIKQALV FT QAAAGVDIVAPSDMMDGRIGAIRQALEDQQHIHTRIMAYSAKYASAFYGPFRDAVGSAS FT NLGKSDKMAYQMDPGNIDEALREVAADLQEGADMVMVKPGMPYLDVVRRVKDAFRVPTF FT AYQVSGEYAMIKAAAANGWLDHDKVMMEALLGFKRAGADGVLTYFALEAATLLQQQR" FT misc_feature complement(23191..24099) FT /note="HMMPfam hit to PF00490, Delta-aminolevulinic acid FT dehydratase" FT misc_feature complement(23377..23415) FT /note="ScanRegExp hit to PS00169, Delta-aminolevulinic acid FT dehydratase active site. Confirmed by InterPro eMOTIF FT pattern match." FT CDS complement(24168..24791) FT /transl_table=11 FT /locus_tag="BP3649" FT /product="putative GTP-binding protein" FT /note="Similar to Pseudomonas aeruginosa probable FT GTP-binding protein EngB SW:ENGB_PSEAE (Q9HT81) (215 aa) FT fasta scores: E(): 1.2e-26, 44.87% id in 205 aa, and to FT Neisseria gonorrhoeae probable GTP-binding protein EngB FT SW:ENGB_NEIGO (O05132) (209 aa) fasta scores: E(): 8.9e-27, FT 43.84% id in 203 aa" FT /db_xref="GOA:Q7VTA1" FT /db_xref="InterPro:IPR002917" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTA1" FT /protein_id="CAE43906.1" FT /translation="MSLLHRASFYISAARLDQLPPAGAPEVCFVGRSNAGKSSAINVLC FT NQRRLAFSSKTPGRTRLINMFGLPDPLAPGEQLGFLVDLPGYGYASVAHREKEKWADIL FT GGYLRDRASLAGIVLLIDIRRGVTDLDRRLTNFIAPTGRPVLALLTKADKLPYGQRMRT FT VFAVRKDLADIGALHMVPFSSTERIGLEEAGAHIENWISPKVVP" FT misc_feature complement(24678..24701) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 25015..25716 FT /transl_table=11 FT /locus_tag="BP3650" FT /product="putative cytochrome C precursor" FT /note="Similar to Azotobacter vinelandii cytochrome c4 FT precursor CycA SW:CYC4_AZOVI (P43302) (210 aa) fasta FT scores: E(): 2.2e-18, 39.89% id in 193 aa, and to FT Pseudomonas stutzeri cytochrome c4 precursor CC4 FT SW:CYC4_PSEST (Q52369) (210 aa) fasta scores: E(): 9.6e-18, FT 37.82% id in 193 aa. Possible alternative translational FT start sites" FT /db_xref="GOA:Q7VTA0" FT /db_xref="HSSP:1CNO" FT /db_xref="InterPro:IPR009056" FT /db_xref="UniProtKB/TrEMBL:Q7VTA0" FT /protein_id="CAE43907.1" FT /translation="MKRVLSRMLVASGLVLGASVHSMSFAADGAAGPAKPDAAKGAQLY FT DQGDASRGVIACASCHGAAGSSTIPANPNLAAQPHEYLVKQLTEFKVKEGEKLPLRMGP FT GGNPTPMTAMAQPLTAQDMQNVALYLSQQPLKEPATAGHENLVELGQKIWRGGLADRNV FT PACAACHGATGAGIPGQYPRLSGQFSSYIEEQLKLFRSGERGNSVPMHDIADRMSDADI FT KAVADYAAGLR" FT misc_feature 25015..25092 FT /note="Signal peptide predicted for BP3650 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.914 between residues 26 and 27" FT misc_feature 25120..25416 FT /note="HMMPfam hit to PF00034, Cytochrome c" FT misc_feature 25183..25200 FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT misc_feature 25480..25713 FT /note="HMMPfam hit to PF00034, Cytochrome c" FT misc_feature 25510..25527 FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT CDS 25837..27930 FT /transl_table=11 FT /locus_tag="BP3651" FT /product="putative membrane protein" FT /note="Similar to Neisseria meningitidis putative FT cytochrome c-type biogenesis protein NMB1804 TR:Q9JY04 FT (EMBL:AE002530) (671 aa) fasta scores: E(): 3.1e-46, 37.75% FT id in 694 aa, and to Thiobacillus ferrooxidans putative FT cytochrome c-type maturation protein ResB TR:Q9ZG10 FT (EMBL:AF220499) (591 aa) fasta scores: E(): 2.1e-39, 31.79% FT id in 673 aa" FT /db_xref="InterPro:IPR007816" FT /db_xref="UniProtKB/TrEMBL:Q7VT99" FT /protein_id="CAE43908.1" FT /translation="MNATSTAPSSRHTLRSLAGDVFELLGSMRFAVSLLMFICIASIVG FT TVLAQNRPSNVYVDQFGPFWFEVFDKFSIWHVYNSWWFLLIMTFLVVSTSVCLIRNTLK FT MLREARSFREHVRASSLRAFPHRVQTEVAQPVSETAQGVTGLLGQFGYAVRERRDGDGI FT MLAAKKGSANRLGYIFAHSAMVIICIGGLLDSEAPVRLQVLFDGKQPIAINGEMARADI FT PDSALLSVNNPSYRANLWVPEGSNASLATIAVNDRSLVQPLPFSLRLKKFTVDYYSTGM FT PSRFLSLVEVTDPETGEMFDQTIEVNEPLRYKGVTVYQSSFDDGGSSVSLTGYPLVGAG FT DTPFKVDGVVGQTSEIGARIGDQPKSMKIEFTALRVINVEDFSGGQPGAQNLSLREHVA FT SVAGSAAGKKNENLRNVGPRIDYKLIDDAGQAHEFQNYMLPVVLDGVPVFLSAVRNNPA FT DDFQYLRIPADDQGSLAEFMRLRAALADPAARQEAARRFAERNAPSGTDRQPLETAAQR FT ALATFAEGGLQAIADFLQANTAPDDLERAAGIVVRLVGASVAELRDIARARAGLPALPQ FT SGPQADEAAQWSRVAVAALSDLAFYPAPVMFSLTDFQERQGSVFQVARTPGKNAVYLGC FT VLLILGIFAMFYIRDRRVWVWVKPADGAGSSIEAAMTSQKRTLDFNQEFDRLREALLRQ FT SKP" FT misc_feature join(25924..25983,26077..26145,26359..26415,27724..27780) FT /note="4 probable transmembrane helices predicted for FT BP3651 by TMHMM2.0 at aa 37-56, 88-110, 182-200 and FT 637-655" FT CDS 27940..29274 FT /transl_table=11 FT /locus_tag="BP3652" FT /product="putative cytochrome c asssembly protein" FT /note="C-terminus is similar to the C-terminal region of FT Chlamydomonas reinhardtii cytochrome c biogenesis protein FT CcsA SW:CCSA_CHLRE (P48269) (353 aa) fasta scores: E(): FT 1.4e-16, 32.75% id in 287 aa. Similar to Neisseria FT meningitidis putative cytochrome c-type biogenesis protein FT NMB1803 TR:Q9JY05 (EMBL:AE002530) (395 aa) fasta scores: FT E(): 1.3e-41, 48.81% id in 422 aa" FT /db_xref="GOA:Q7VT98" FT /db_xref="InterPro:IPR017562" FT /db_xref="UniProtKB/TrEMBL:Q7VT98" FT /protein_id="CAE43909.1" FT /translation="MSTTTSNSAAAWTSGFSPTGDGRAQRGRPDWTDIAFFLLLAAGAG FT FALTRFSGAMDYYEKLILCGTVPALAWLGWLWRPLRHLMIACALAAGLALLLYQNDLAR FT AEQVFFLKYLLSSQSAILWMSALFVLAMLCYWIGILSPTAAWLGTALTWGAVFAGTTGL FT LVRWREGHLMGPDLGHIPVSNLYEVFVLFALITALFYLYYERKYATRALGGFVLLVITS FT ATIFLLWYSFTRDAGQIQPLVPALKSWWMKLHVPANFIGYGTFSLAAMVGFAYLVKQYG FT QTTSWLKLAPLFVLGVALCVEPIVFRTEGLSATWMIYCGAGVVIVGGILLARARIAQAL FT PSLEVLDDIMYRAIAIGFAFFTVATVLGALWAADAWGAYWQWDPKETWALIVWLNYAAW FT LHMRLIKGLRGTMAAYWSLVGLLITGFAFLGVNMFLSGLHSYGKL" FT misc_feature join(28039..28098,28108..28167,28186..28239,28297..28356, FT 28375..28434,28477..28545,28570..28638,28702..28770, FT 28789..28857,28870..28938,28999..29058,29101..29154, FT 29173..29241) FT /note="13 probable transmembrane helices predicted for FT BP3652 by TMHMM2.0 at aa 34-53, 57-76, 83-100, 120-139, FT 146-165, 180-202, 211-233, 255-277, 284-306, 311-333, FT 354-373, 388-405 and 412-434" FT misc_feature 28519..29196 FT /note="HMMPfam hit to PF01578, Cytochrome C assembly FT protein" FT CDS complement(29345..30634) FT /transl_table=11 FT /gene="lysA" FT /locus_tag="BP3653" FT /product="diaminopimelate decarboxylase" FT /EC_number="4.1.1.20" FT /note="Similar to Pseudomonas aeruginosa diaminopimelate FT decarboxylase LysA SW:DCDA_PSEAE (P19572) (415 aa) fasta FT scores: E(): 4.3e-93, 62.31% id in 414 aa, and to Vibrio FT cholerae diaminopimelate decarboxylase VC0125 SW:DCDA_VIBCH FT (Q9KVL7) (417 aa) fasta scores: E(): 7.7e-93, 59.28% id in FT 420 aa" FT /db_xref="GOA:Q7VT97" FT /db_xref="HSSP:1HKV" FT /db_xref="InterPro:IPR002986" FT /db_xref="UniProtKB/TrEMBL:Q7VT97" FT /protein_id="CAE43910.1" FT /translation="MTAVSVQPDLAGSPHFRYQNGVLHAEDVPLDSLAAQLGTPLYVYS FT RAALRSAWETYRDAIGERPVLVCFGMKTNSNLAVLKEFARLGAGFDIVSGGELARVLAV FT GGDPAKVVFSGVGKQAWEMRAALEADVKCFNVESEAELERLSDVAVSMGRRARVSLRVN FT PDVDAQTHPYISTGLKENKFGIAIESAPAAYRLAARLPGVEVVGVDCHIGSQLTDISPY FT FDALEKLLDLIEQLAENGIAIKHLDLGGGLGIRYTDEIPPSPKALLDRVFERINARGLG FT HLHIVLEPGRSLAGNAGVLLTTVQYLKHAEARNFAIVDAAMNDLLRPALYEAYHGVQPV FT TPRADKRIEYDVVGPVCESADWLARGRALAIQAGDVLAVESAGAYSMVMASNYNTRVRA FT AEVMVDGNRHYIVRQRETLESLYQGESTLP" FT misc_feature complement(29447..30514) FT /note="HMMPfam hit to PF00278, Pyridoxal-dependent FT decarboxylase, C-terminal sheet domain" FT misc_feature complement(29876..29926) FT /note="ScanRegExp hit to PS00879, Orn/DAP/Arg FT decarboxylases family 2 signature 2. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 30848..31177 FT /transl_table=11 FT /gene="cyaY" FT /locus_tag="BP3654" FT /product="conserved hypothetical protein" FT /note="Similar to hypothetical protein Escherichia coli FT CyaY SW:CYAY_ECOLI (P27838) (106 aa) fasta scores: E(): FT 7.7e-13, 37.03% id in 108 aa, and to Vibrio cholerae FT hypothetical protein VC0123 SW:CYAY_VIBCH (Q9KVL8) (104 aa) FT fasta scores: E(): 2.2e-13, 44.34% id in 106 aa" FT /db_xref="InterPro:IPR002908" FT /db_xref="UniProtKB/Swiss-Prot:Q7VT96" FT /protein_id="CAE43911.1" FT /translation="MTETEFLALVDQVLDSIESQADDWAAGLDVDIEATRSGNVLTLVF FT EDGTQVVVNVQAAMQELWVAARSGGFHYRYDGQHWNDTRGGPRLPDALSQICSEAAGVP FT VSVRL" FT misc_feature 30848..31171 FT /note="HMMPfam hit to PF01491, Frataxin-like domain" FT CDS complement(31234..33678) FT /transl_table=11 FT /locus_tag="BP3655" FT /product="penicillin-binding protein 1A" FT /EC_number="2.4.2.-" FT /note="Similar to Escherichia coli penicillin-binding FT protein 1A MrcA SW:PBPA_ECOLI (P02918) (850 aa) fasta FT scores: E(): 2.2e-84, 37.45% id in 841 aa, and to FT Pseudomonas aeruginosa penicillin-binding protein 1A PA5045 FT SW:PBPA_PSEAE (Q07806) (822 aa) fasta scores: E(): 2.6e-85, FT 40.69% id in 774 aa. Similar to BP0905, 67.640% identity FT (68.473% ungapped) in 822 aa overlap" FT /db_xref="GOA:Q7VT95" FT /db_xref="InterPro:IPR001460" FT /db_xref="UniProtKB/TrEMBL:Q7VT95" FT /protein_id="CAE43912.1" FT /translation="MSKRQNSTKQDKPAKSGSAILRFFLKAGIFFGGLALCGVLLAGMA FT LALAWPNLPDLHAMTDYRPRVPLRVYTADRVLIGEFGEERRNVLRFNEIPDVMKSAVLA FT AEDDRFYQHGGIDWMGVIRAGLTNLISMSKSQGASTITMQVARNFYLSSEKTYSRKFYE FT LLLTFKIESQLTKDQILELYMNQIYLGHRAYGFAAASRTYFGKPLSQVTPSEAAMLAGI FT PKAPSRFNPISNRPRAELRQRYVLGRMYSLGYLTEPEYKEAMAQPIVIKSAEGTPAGGY FT AIHGEYVAELARQLLYNVYQDNLYSRGINIYTTVQSKDQESAYRAVRDGVLEYTRRAPY FT PGPEEQLDMPAGVENDPQALDEFLDGVFDKFSDSGDLLTAVVLSASPTEIKLVRSSREV FT ISITDKKALGVVARALTDKAKPEMRLKRGSVVYIHKYNDNWEVINMPAVQAAFVALSPQ FT DGAIRAMVGGFDFYRGNFNRVTQAWRQPGSNIKPFIYAASLERGLTPATQISDQPFELS FT AAQTGSKAWHPKNYGNQYEPMLTMRQGLYKSKNMVSIRILQAIGPQYAQDYLTRFGFDK FT ARQPAVLPLALGAGSVTPLQLAGAYAVFANGGYRITPYLIDRVTDSSGKVLMQSRPVIA FT GDAAARAIDARTAFVMDDMLRGVATSGTAARARATLKRSDVAGKTGTTNESVDAWFSGY FT TPSLVATAWLGFDQPKSLGSRETGGGVAMPIWLDYMKDALKGVPEEKQRPRPDGLLVEN FT GELYFSEFPPGQAVARLGLPQAGDALGDFLNGLTGGNDNSIRVAPGVGTQGSQPWSQNI FT PF" FT misc_feature complement(31495..32466) FT /note="HMMPfam hit to PF00905, Penicillin binding protein FT transpeptidase domain" FT misc_feature complement(32971..33477) FT /note="HMMPfam hit to PF00912, Transglycosylase" FT misc_feature complement(33532..33678) FT /note="Signal peptide predicted for BP3663 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.380 between residues 29 and 30" FT CDS 33792..34427 FT /transl_table=11 FT /gene="aroK" FT /locus_tag="BP3656" FT /product="shikimate kinase I" FT /EC_number="2.7.1.71" FT /note="Similar to Escherichia coli shikimate kinase I AroK FT SW:AROK_ECOLI (P24167) (172 aa) fasta scores: E(): 6.9e-23, FT 45.78% id in 166 aa, and to Pseudomonas aeruginosa FT shikimate kinase PA5039 SW:AROK_PSEAE (P34003) (172 aa) FT fasta scores: E(): 5.3e-27, 51.82% id in 164 aa. CDS is FT extended at the N-terminus in comparison to orthologues. FT Next possible alternative translational start site FT truncates the protein in comparison to orthologues" FT /db_xref="GOA:Q7VT94" FT /db_xref="HSSP:1KAG" FT /db_xref="InterPro:IPR000623" FT /db_xref="UniProtKB/Swiss-Prot:Q7VT94" FT /protein_id="CAE43913.1" FT /translation="MNASANLCAASANDPQPGDQEAAHPVACAGDEPAAFLPHDLPIFL FT VGMMGAGKTTIGRGLARALRREFIDLDHELEARCGVRVPVIFEIEGEAGFRRREAAALQ FT ECTQRRQIILATGGGAVLAAENRQALRERGIVIYLRASVEELFRRTSRDRNRPLLATAD FT PRATLRELMVAREPLYNEVADLVIDTGSMPIATLVKSLLPKLQAYEKK" FT misc_feature 33912..34409 FT /note="HMMPfam hit to PF01202, Shikimate kinase" FT misc_feature 33930..33953 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 34077..34154 FT /note="ScanRegExp hit to PS01128, Shikimate kinase FT signature." FT CDS 34427..35503 FT /transl_table=11 FT /gene="aroB" FT /locus_tag="BP3657" FT /product="3-dehydroquinate synthase" FT /EC_number="4.2.3.4" FT /note="Similar to Salmonella typhimurium 3-dehydroquinate FT synthase AroB or stm3486 SWALL:AROB_SALTY (SWALL:P77980) FT (362 aa) fasta scores: E(): 6.1e-65, 54.13% id in 351 aa, FT and to Escherichia coli 3-dehydroquinate synthase AroB or FT b3389 SWALL:AROB_ECOLI (SWALL:P07639) (362 aa) fasta FT scores: E(): 2.9e-64, 53.33% id in 345 aa" FT /db_xref="GOA:Q7VT93" FT /db_xref="InterPro:IPR016037" FT /db_xref="UniProtKB/Swiss-Prot:Q7VT93" FT /protein_id="CAE43914.1" FT /translation="MDVVEVATPGGSYPIHIGPGRLDALDASIPADATAIAVVTNPTVA FT GLYGARVEAALARTGKRVLRIELPDGEAHKDWQTLNLIFDALLENRLDRRAVLVALGGG FT VIGDMTGFAAAVYMRGIRFVQVPTTLLAQVDSSVGGKTAVNHPLGKNMIGAFYQPVAVE FT IDTEVLGTLPAREVSAGLAEVIKYGLILDAGFWQWCEDNVGALRALEPRALAYAIRRSC FT ELKAQVVGQDERESGLRAILNLGHTFGHAIESGLGYGEWLHGEAVGCGMVQAAELSTLA FT AGFPAADVQRVRDLVREIGCPTVAPDLGAERWLALMQVDKKTEGGEIRFVLMPRIGQAL FT SRAAPEADVRTALERTTR" FT misc_feature 34472..35488 FT /note="HMMPfam hit to PF01761, 3-dehydroquinate synthase" FT CDS 35500..36654 FT /transl_table=11 FT /locus_tag="BP3658" FT /product="putative phosphohydrolase" FT /note="Weakly similar to Escherichia coli FT deoxyguanosinetriphosphate triphosphohydrolase Dgt FT SW:DGTP_ECOLI (P15723) (504 aa) fasta scores: E(): 0.00029, FT 25.37% id in 469 aa. Similar to Caulobacter crescentus FT putative deoxyguanosinetriphosphate triphosphohydrolase FT CC2008 TR:Q9A6S5 (EMBL:AE005874) (394 aa) fasta scores: FT E(): 4.3e-58, 49.61% id in 385 aa" FT /db_xref="GOA:Q7VT92" FT /db_xref="InterPro:IPR006674" FT /db_xref="UniProtKB/Swiss-Prot:Q7VT92" FT /protein_id="CAE43915.1" FT /translation="MNKDGTVVLMNELASYASDPSKTRGRRHSEPPPENRTEFQRDRDR FT IIHSNAFRRLEYKTQVFVNHEGDLFRTRLTHSLEVAQIARTLARSLRVSEDLTEAIALA FT HDLGHTPFGHAGQDELNACMRELAPQAGGFEHNLQSLRVVDELEERYAEFNGLNLCFET FT REGILKHCSATHARQLGAVGERFLDRTQPSLEAQLANLADEVAYNNHDVDDGLRSGLIT FT LEQLQEVGIFARHYAEVARRYPQLAPRRATSETIRRMINTLIVDLTATSLARIRDHAPA FT SADDVRRAPPLAGFSAAVRREADELKKFLFDNLYRHYRVVRMTTKAQRIVRELFQAFLG FT DPRLLPPDYRREQPQDQARAISDYIAGMTDRYAIREHRRLFEMG" FT misc_feature 35716..36123 FT /note="HMMPfam hit to PF01966, HD domain" FT CDS complement(36828..37487) FT /transl_table=11 FT /locus_tag="BP3659" FT /product="putative glutathione S-transferase" FT /note="Similar to Dianthus caryophyllus glutathione FT S-transferase 1 Gst1 SW:GTZ1_DIACA (P28342) (221 aa) fasta FT scores: E(): 2.2e-07, 31.6% id in 174 aa, and to Rhizobium FT meliloti putative glutathione S-transferase protein FT TR:CAC47844 (EMBL:AL591793) (215 aa) fasta scores: E(): FT 1.3e-35, 50.23% id in 211 aa" FT /db_xref="GOA:Q7VT91" FT /db_xref="HSSP:1E6B" FT /db_xref="InterPro:IPR012335" FT /db_xref="UniProtKB/TrEMBL:Q7VT91" FT /protein_id="CAE43916.1" FT /translation="MYTLLIANKNYSSWSLRAWLALRQAGIPFEEQKLGLLTEAFTQRL FT QAITPAGLVPVLLDGDFAVWDSLAICEYVAERHPDAQLWPADRRARARARSLAAQMHSG FT FGALRQTMPMNIEARLPGIDLSAAQADISRVQAIWHDTRAEFGQSGPFLFGRFSIADAF FT YAPVVSRFQTYGVAAAGAVRDYMEAVQALPAMQAWTRDALAEATFVADDEPYRTHR" FT misc_feature complement(36909..37484) FT /note="HMMPfam hit to PF00043, Glutathione S-transferase, FT C-terminal domain" FT CDS complement(37543..40401) FT /transl_table=11 FT /gene="uvrA" FT /locus_tag="BP3660" FT /product="excinuclease ABC subunit A" FT /note="Similar to Haemophilus influenzae excinuclease ABC FT subunit A UvrA SW:UVRA_HAEIN (P44410) (943 aa) fasta FT scores: E(): 0, 65.01% id in 949 aa, and to Salmonella FT typhimurium excinuclease ABC subunit A UvrA SW:UVRA_SALTY FT (P37434) (941 aa) fasta scores: E(): 0, 65.15% id in 950 FT aa" FT /db_xref="GOA:Q7VT90" FT /db_xref="InterPro:IPR004602" FT /db_xref="UniProtKB/TrEMBL:Q7VT90" FT /protein_id="CAE43917.1" FT /translation="MDAIRIRGARTHNLKNVSLDLPRHQLVVVTGLSGSGKSSLAFDTL FT YAEGQRRYVESLSAYARQFLQLMDKPDVDLIEGLSPAISIEQKSAGHNPRSTVGTITEI FT HDYLRLLYARVGTPYCPDHGLPLQAQSVGQMVDAVLAWPAEARLAVLAPIARARKGSFE FT DELASLQAQGFVRLRVDGQLQEIEQLPALKKTEKHDLDVVIDRLRIRPESQQRLAESFE FT TALQLAEGRAIALDMDSGREQVFSSRYACPICSHSLAELEPRLFSFNNPMGACPGCDGI FT GQVGFFDPKRVVAFPELSLAAGAIRGWDRRNSFTHSLLTSLATHYEFDIDTPFEELPAE FT VREKVLHGSGEEEIAFFYVNEKGRSTVKRHPFEGVIPNLERRWRETDSATVREELGKYR FT NIKTCPDCGGSRLRPEARNVLIGSEPREGERHGQAIFEVESMPLSVCLDWFRQLQLTGA FT KQEIAQRIVREIEARLSFLNNVGLNYLSLDRSADTISGGEAQRIRLASQIGSGLTGVMY FT VLDEPSIGLHQRDNDRLIGTLQHLRDLGNSVIVVEHDEDMIRCADWVVDMGPGAGEHGG FT QVVAQGTPEAVQTDPQSLTGQYLSGARAIEIPARRPVADDQPWLHLSGATGNNLKSVDL FT RIPAARLVCVTGVSGSGKSTLVNDTLAVALARQLNHAQGEPAPYAGLAGLEHFDKTISV FT DQSPIGRTPRSNPATYTGLFTPIRELFAGVPEARARGYDPGRFSFNVKGGRCEACQGDG FT VVKVEMHFLPDMYVPCDVCHGKRYNRETLEIRYRGRNISEVLDLTVEQALEYFESVPAI FT ARKLHTLIDVGLSYIRLGQSATTLSGGEAQRVKLSLELSRRSTGRTLYILDEPTTGLHF FT HDIELLLKVLNQLVDSGNTVLIIEHNLDVIKTADWLVDMGPEGGDGGGRVVAQGTPEQV FT AASPDSHTGHYLGRVLRNGKRR" FT misc_feature complement(37669..38484) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(37852..37896) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature." FT misc_feature complement(38080..38097) FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT misc_feature complement(38440..38463) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(38692..39354) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(38878..38922) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(40288..40311) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 40557..41741 FT /transl_table=11 FT /locus_tag="BP3661" FT /product="putative transport protein" FT /note="Weakly similar to Escherichia coli tetracycline FT resistance protein TetA SW:TCR3_ECOLI (P02981) (396 aa) FT fasta scores: E(): 5.4e-10, 26.78% id in 392 aa. Similar to FT the N-terminal region of Pseudomonas aeruginosa probable FT MFS transporter PA4233 TR:Q9HWG1 (EMBL:AE004840) (462 aa) FT fasta scores: E(): 2.2e-58, 48.07% id in 389 aa" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7VT89" FT /protein_id="CAE43918.1" FT /translation="MPADQKLQLTRSERRASVALAGLFACRMLGLFLLLPVFAVAARDL FT PGGNDPARVGLALGMYGLTQAFMQIPFGLASDRWGRRPVVVAGLVLFIIGSVVCALADD FT VYWITLGRAIQGAGAISAAVTAWLADATRDEVRTRAMAMVGGSIGLSFAVSLVAAPVLV FT GWWGLSGLFWTIACLGLASLTVARWMVPVVPRTEARTMQGASARAVLLHADLLRLNFGV FT FVLHLIQVALFLVTPSLLARLGGLDARDLWRVYLPVILVSFVLMVPAVFVAEKRRAHRA FT ALRAAVAGLIVVCALLPLAAHGFYALALALTGFFVAFNILEALQPSLVSRVAPAQYKGL FT ALGFYNTAQAAGLFAGGALGGWLAASGGADAVYIAAAALAALWLAVTWALRPLR" FT misc_feature join(40605..40673,40716..40784,40803..40862,40872..40940, FT 40974..41042,41070..41138,41199..41267,41310..41378, FT 41397..41456,41466..41519,41580..41648,41658..41726) FT /note="12 probable transmembrane helices predicted for FT BP3661 by TMHMM2.0 at aa 17-39, 54-76, 83-102, 106-128, FT 140-162, 172-194, 215-237, 252-274, 281-300, 304-321, FT 342-364 and 368-390" FT misc_feature 40608..41735 FT /note="HMMPfam hit to PF00083, Sugar (and other) FT transporter" FT CDS 41974..42474 FT /transl_table=11 FT /gene="ssb" FT /locus_tag="BP3662" FT /product="single-strand binding protein" FT /note="Similar to Proteus mirabilis single-strand binding FT protein Ssb SW:SSB_PROMI (P28046) (173 aa) fasta scores: FT E(): 2.4e-27, 56.72% id in 171 aa, and to Serratia FT marcescens single-strand binding protein Ssb SW:SSB_SERMA FT (P25762) (175 aa) fasta scores: E(): 3.9e-27, 56.32% id in FT 174 aa" FT /db_xref="GOA:P66846" FT /db_xref="InterPro:IPR011344" FT /db_xref="UniProtKB/Swiss-Prot:P66846" FT /protein_id="CAE43919.1" FT /translation="MASVNKVILVGNLGRDPEVRYSPDGAAICNVSIATTSQWKDKASG FT ERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEGRLKTRKWQDKDTGADRYSTEIVAD FT QMQMLGGRDSGGDSGGGYGGGYDDAPRQQRAPAQRPAAAPQRPAPQAAPAANLADMDDD FT IPF" FT misc_feature 41983..42021 FT /note="ScanRegExp hit to PS00735, Single-strand binding FT protein family signature 1. Confirmed by InterPro eMOTIF FT pattern match." FT misc_feature 41983..42303 FT /note="HMMPfam hit to PF00436, Single-strand binding FT protein family" FT misc_feature 42124..42153 FT /note="ScanRegExp hit to PS00736, Single-strand binding FT protein family signature 2. Confirmed by InterPro eMOTIF FT pattern match." FT CDS 42647..44836 FT /transl_table=11 FT /gene="bfrC" FT /locus_tag="BP3663" FT /product="ferric siderophore receptor" FT /note="Similar to Vibrio anguillarum ferric anguibactin FT receptor precursor FatA SW:FATA_VIBAN (P11461) (726 aa) FT fasta scores: E(): 1.9e-33, 24.84% id in 664 aa, and to FT Pseudomonas aeruginosa probable TonB-dependent receptor FT protein PA1910 TR:Q9I2J4 (EMBL:AE004617) (804 aa) fasta FT scores: E(): 6.2e-37, 28.2% id in 741 aa. Highly similar to FT Bordetella bronchiseptica unidentified ferric siderophore FT receptor BfrC TR:P94274 (EMBL:U79564) (724 aa) fasta FT scores: E(): 0, 98.61% id in 724 aa," FT /db_xref="GOA:Q7VT87" FT /db_xref="InterPro:IPR010105" FT /db_xref="UniProtKB/TrEMBL:Q7VT87" FT /protein_id="CAE43920.1" FT /translation="MPRPTSRRTRPARRQAQPAFVPALFMLALGAVAAGARAQPAAAGV FT PDTQGVAQMPAVTVNAAPVDDTLEHLEAPVDTGALGRRTQLETPFSTTVVTARDMEERQ FT VNKLGDVFALDASVTDNSASYGAWASYLTVRGLPLDWQNSYRIDGRPFLSYVTTLPFEH FT FEQIDLLKGASGFMYGFGSPGGLVNYVTKKPTDEAVRSVELGYVSKGLLREHVDLGGRV FT GQSGAFGYRLNATHEEGNTYNGGSLYRDSVSLALDARLSDRLTWDFQSIYQDRKAIGQE FT PTIYAGTMAGSELPSPVRNDNDRLVGQGPYADNAFRYYSTGLKYQLADEWTLSTNYSYS FT STRTRRNESVLFLRDQAGDYDDYRSDYGEAYGYNQWQAMLEGKFATGPLKHHVVAGASW FT QKQKNDYSANGVYQLQGTGNLRARNTNTYYSEGQLHLYRAAEITQKALFASDTVDLTGG FT WSVLGGLRYTNYAQQGFDATGARTSRYDKNGVLTPTFALMYKLTPRTMAYASYIESLEP FT GSSVGAAYANFGALLDPLKSKQYELGIKTEQDGWAATAALFRIEKKAEYANAANELVQD FT GKTLYQGLELGASTRIARDWNVGGSLMLLDSEYKKGSDFTGNRVAGAPKFVAAAQLAYS FT VPQVPGLKLRADVKYTGNTMLGASNRVQVDDYAIVNIGATYDTQIHGYEATFTAGINNV FT ANKRYWLYQSSDYVKAGDPRTYGLTSISRYPDIWI" FT misc_feature 42647..42775 FT /note="Signal peptide predicted for BP3663 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.380 between residues 43 and 44" FT misc_feature 44498..44803 FT /note="HMMPfam hit to PF00593, TonB dependent receptor FT C-terminal region" FT CDS 44852..45370 FT /transl_table=11 FT /locus_tag="BP3664" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PA4095 TR:Q9HWT3 (EMBL:AE004825) (177 aa) fasta FT scores: E(): 2e-14, 32.23% id in 152 aa, and to Alcaligenes FT sp. 2,4'-dihydroxyacetophenone dioxygenase Dad TR:Q9REI7 FT (EMBL:AJ133820) (176 aa) fasta scores: E(): 3.3e-12, 31.69% FT id in 142 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VT86" FT /protein_id="CAE43921.1" FT /translation="MEENTMGHGIAGGTGLAARNEAPELIRALDRDDERCWVPLAPGAW FT FYPMAFDVRNGVWHSVFRVAPGAQLPTHYHLGRVVGCTLRGRWHYRERDWEHRPGSYLL FT EVPGDSHTFEVIGEETVELFTVNEGGFLLLDERGDVTGITDVLLRLEQARAHYERVGLG FT RAAIDSLIR" FT CDS join(45389..45679,45679..46077) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3665" FT /product="putative aldolase (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 97. The frameshift occurs as a FT result of an internal deletion. The sequence has been FT checked and believed to be correct. Similar to Escherichia FT coli 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase HpcH FT SW:HPAI_ECOLI (Q47098) (262 aa) fasta scores: E(): 2.5e-05, FT 24.4% id in 254 aa, and to Staphylococcus aureus strain FT N315 hypothetical protein, similar to various aldolase FT SA0118 TR:BAB56284 (EMBL:AP003129) (259 aa) fasta scores: FT E(): 5.8e-09, 29.28% id in 239 aa." FT /db_xref="PSEUDO:CAE43922.1" FT variation 45679 FT /note="~60 bp deletion in pertussis relative to FT parapertussis and bronchiseptica" FT CDS 46106..47122 FT /transl_table=11 FT /locus_tag="BP3666" FT /product="putative exported protein" FT /note="Similar to Pseudomonas chlororaphis hypothetical FT protein TR:Q9L3W5 (EMBL:AJ271325) (336 aa) fasta scores: FT E(): 5.5e-29, 35.42% id in 319 aa, and to Alcaligenes FT eutrophus plasmid pENH91 hypothetical protein TR:Q9WXD0 FT (EMBL:AB019032) (336 aa) fasta scores: E(): 7.2e-29, 35.42% FT id in 319 aa" FT /db_xref="GOA:Q7VT85" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VT85" FT /protein_id="CAE43923.1" FT /translation="MKTLASMVRWPRIAGAVVRQACAAALGLALGAAPALADYPSRPVT FT LVVPSPPGGSTDAIARVLADALGKRLGQSIVIENKGGGGGIVGSSYVLDKPADGHTLLL FT AISSKTVARALQPALAYDPIRDFTAVALVSRVPTVMVTSVAAGLPDFARLKAYIAANPG FT KTAWAVPGIGTAPHLTEHVLMQALGGKVNEIQYRGSAPMHVDLLAGRVDVVVDSYTALR FT QHIDDRKVVPVAVIGRGRIEAMSAVPTLGELGYRTFEEVLFDGWNAIDVRASTPPEVVA FT RLSQALQDVLADRAFRERVVQLGLVPFAPMPASQAQDFVQDVSRVLSPVAASLAAAQ" FT misc_feature 46106..46216 FT /note="Signal peptide predicted for BP3666 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.995 between residues 37 and 38" FT CDS 47176..47970 FT /transl_table=11 FT /locus_tag="BP3667" FT /product="GntR family regulatory proteins" FT /note="Similar to Streptomyces coelicolor putative FT GntR-family regulatory protein SC6F7.27c TR:Q9KZB5 FT (EMBL:AL353870) (261 aa) fasta scores: E(): 3e-05, 28% id FT in 250 aa, and to Deinococcus radiodurans GntR family FT transcriptional regulator DRA0211 TR:Q9RYU6 (EMBL:AE001863) FT (279 aa) fasta scores: E(): 2.3e-07, 28.38% id in 229 aa" FT /db_xref="GOA:Q7VT84" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VT84" FT /protein_id="CAE43924.1" FT /translation="MSASVDVLSLPEVEAAASADTPNLLYWTIYQGLVRSIEADTAAVG FT KDLPIERLISAHYSASRFTVRQALDLLEKRGYIRKQRAKPARVISRSPVVPVERHLRRL FT SDILSPAVIHQTRVTGFGPARHDEAAATLGQAPGAQLYRLQLVHADQAQNIGFSDIYFP FT AHIGQRLSLQDFDAAARNGPLFVYPIVEQKIGFKVDHARINIGAESHARAQRTAVAEAL FT GTAPLVRVQYVFSHAGEPVQFTTNWLDSRFFSVSYELAEGEF" FT misc_feature 47260..47439 FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT CDS complement(48075..48908) FT /transl_table=11 FT /locus_tag="BP3668" FT /product="transcriptional regulator" FT /note="Similar to Pseudomonas putida plasmid NAH7 FT transcriptional activator protein NahR SW:NAHR_PSEPU FT (P10183) (300 aa) fasta scores: E(): 3.5e-26, 33.09% id in FT 278 aa, and to Ralstonia sp. U2 plasmid pWWU2 LysR-like FT regulator protein NagR TR:Q9EXL7 (EMBL:AF036940) (301 aa) FT fasta scores: E(): 2.2e-26, 35.12% id in 279 aa" FT /db_xref="GOA:Q7VT83" FT /db_xref="InterPro:IPR005119" FT /db_xref="UniProtKB/TrEMBL:Q7VT83" FT /protein_id="CAE43925.1" FT /translation="MIAKHLDLNLLMIFDAILAEGHVTRAAERLAMSQSAVSKGLAQLR FT QAFGDPLFLRASRGVVPTHRALEIADQVRQAIAALNSLAGPVTEFDARSAHAHFNIGAT FT DYVSFVLLPGLMRRLQETAPHVSLTLHDMESMMPEEMLLAGKVDLVISSVASVNFPIYR FT QELFRDHYVCLCRAGHPALADPVPIEQFVSSRHLAMPRQNGARERVLQDTLQRLGVTRD FT VAVQVPHMLAIPATLTATDLVATMACRVAREFAARHPLQVLAHPLPLPDFPVSQL" FT misc_feature complement(48087..48422) FT /note="HMMPfam hit to PF01046, NodD transcription activator FT carboxyl terminal region" FT misc_feature complement(48456..48887) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(48753..48845) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS 49188..50678 FT /transl_table=11 FT /locus_tag="BP3669" FT /product="putative chlorohydrolase" FT /note="Similar to Pseudomonas sp. hydroxydechloroatrazine FT ethylaminohydrolase AtzB SW:ATZB_PSESD (P95442) (481 aa) FT fasta scores: E(): 5.8e-07, 25.27% id in 463 aa, and to FT Agrobacterium tumefaciens N-ethylammeline chlorohydrolase FT AGR_L_363p TR:AAK88751 (EMBL:AE008216) (498 aa) fasta FT scores: E(): 2.6e-17, 33.13% id in 510 aa" FT /db_xref="GOA:Q7VT82" FT /db_xref="InterPro:IPR006680" FT /db_xref="UniProtKB/TrEMBL:Q7VT82" FT /protein_id="CAE43926.1" FT /translation="MLTQIKGEWVLGFADGNHRMLCDASVVYEGERIVHVGTEFDGVAD FT RVIDARGCLVAPGFIDTHVHSGHRALHKLLADGGRPDLFGQPYMDVTIARDGTRIKGYP FT NYLSREEAAVDPGIALHAAFTVAELLRNGVTTFVELGGHVMVQEALWRECERLGVRGYL FT GPGYDSGRWAADDQGRLRRVPYPDGGDHLFEEAVAFIKRVQAAGNDLVNGILVPREVEN FT CSVDILRRTVQAAQELGVPMATHAGYNVIEFYETVREHRMTPIELLHSVGMLGPRLNIG FT HANLISDSPRLNYSGGRDLALMGEHRVSISHCPINIVRRARVLDSWKKYREAGVNLTIG FT SDTYPRDMVMNMRTASYHGKVMSHDLNAASAAEVFEAATLGGARSLGRTDIGRLEPGAR FT ADVIAINVGRQDVLRYGPIWDPIRSLVECGVGDDVELVVTNGQVRMEQGRIAGVDLGAL FT RAEAQQFADNVWRDLQDWDPLRRTAQAMCPPSFCPDCM" FT misc_feature 49572..50510 FT /note="HMMPfam hit to PF01685, Chlorohydrolase" FT CDS 50717..51703 FT /transl_table=11 FT /locus_tag="BP3670" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT SMA1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: FT E(): 3.6e-35, 36.84% id in 323 aa, and to Comamonas FT testosteroni hypothetical protein OrfJ TR:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 3e-34, 36.19% FT id in 326 aa" FT /db_xref="GOA:Q7VT81" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VT81" FT /protein_id="CAE43927.1" FT /translation="MKKLMQWGAALALAVTCGAAQAGDAVAAYPQRPVRLIVPYGAGGA FT ADVLARIMAEKLSAIWKQPVIVENKPGGVGTIGIMATVQAEPDGYTLVSVPVSDLAVNP FT HLYRKRPFDVRKDLAPVSQVGAVPNVLLVSNALEVGDVQALVARAAAKPGYLTYSSPGV FT GSQAHIAAEMFAMRAGLSLQHIPYNSVPAALTDVAGGQIDMMFAQLPAVLPFVKSGRVK FT VLAVAADARTPLLPDLPTLGEVGGPSIGDAISWSAVMAPAGTPLALREKIAAGIASAIQ FT SPQVREKLAAQGLIGLGGTPQQLEQAWRQDYERYGAAVKAMHIQLLD" FT misc_feature 50717..50782 FT /note="Signal peptide predicted for BP3670 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.993 between residues 22 and 23" FT CDS 51856..53001 FT /transl_table=11 FT /locus_tag="BP3671" FT /product="putative glycosyl transferases" FT /note="Similar to Xylella fastidiosa hypothetical protein FT XF1470 TR:Q9PDA9 (EMBL:AE003977) (376 aa) fasta scores: FT E(): 4e-28, 43.31% id in 374 aa. Weak similarity to FT Rhizobium meliloti lipopolysaccharide core biosynthesis FT glycosyl transferase LpsE SW:LPSE_RHIME (Q9R9N1) (340 aa) FT fasta scores: E(): 1.1e-11, 29.49% id in 339 aa. Similar to FT BP2331, 69.315% identity (69.315% ungapped) in 365 aa FT overlap" FT /db_xref="GOA:Q7VT80" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7VT80" FT /protein_id="CAE43928.1" FT /translation="MSQPHPLRIAHAEAAIGFGGQEQRILKEALAMRERGHHVELICRP FT QARLIERALDAGIRVHTVPMGGLRNFVRGVPRVRRILREGGFDVLNTHSRIDTLLAGAG FT ARLAGTPLVVRTRHLSNRVNSMLSYTWIPHRVSTVSDHVRRYLIERGVSPAHIETIYSP FT INLPPPGLRSTLRDELGLPADAVVVACVAIMRATKGHRELIEALRPLMASRPQVHLVLV FT GNGSPLFEQLQALIAELGLGERIHMLGFRDDVPNVLAGSDIFALPTRKEASGTVFVEAA FT ACGLPVVGVDVGGVSEMLRNGETGLLVPPDDAAALQGALRSLIDDASLRARMGGAGERM FT VRDEGKFSLARLAERTELVYRKWLAERRDAPTAASRSARQS" FT misc_feature 52366..52875 FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1" FT CDS 53008..53826 FT /transl_table=11 FT /locus_tag="BP3672" FT /product="hypothetical protein" FT /note="Poor database matches. Weakly similar to Escherichia FT coli hypothetical protein YrbL SW:YRBL_ECOLI (P46021) (210 FT aa) fasta scores: E(): 0.024, 25.88% id in 197 aa. Also FT similar to BP2342, 45.673% identity (47.500% ungapped) in FT 208 aa overlap." FT /db_xref="InterPro:IPR019647" FT /db_xref="UniProtKB/TrEMBL:Q7VT79" FT /protein_id="CAE43929.1" FT /translation="MSIPTSRLAAVQAPPQDIAPQTLRDRMPAVLPVMDVVPAAMDWPP FT FAVVDLLGATLLATGSERDVYQHPGNAALLIKIVNRARINEPGRRRPWHKKFHREDAHR FT VFITELIEYISTTVQLRQADGNTLLARIAGLALTSAGLGLVVEKIVDAEGKAAPTLAQV FT VSTQGFGPQLREQLRAFFLALIEAHVIFNDVSARNIVVGRNATGQDGLFLVDGFGPKQL FT LPLYAWSKTLNRRRLLRKYEDMVRKLARLGDRLARQAGQPLPGDGARPPR" FT CDS 53985..54956 FT /transl_table=11 FT /locus_tag="BP3673" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Salmonella typhimurium transcriptional FT activator protein MetR SW:METR_SALTY (P05984) (317 aa) FT fasta scores: E(): 1.9e-09, 25.67% id in 296 aa, and to FT Pseudomonas aeruginosa probable transcriptional regulator FT PA0816 TR:Q9I5C3 (EMBL:AE004516) (294 aa) fasta scores: FT E(): 4e-11, 27.39% id in 303 aa" FT /db_xref="GOA:Q7VT78" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VT78" FT /protein_id="CAE43930.1" FT /translation="MGALKNDSSLDVRMLRIFAAVAAADSLSAAAQALNITQSAVSQTV FT TQIESILGMRVLDRTRRPYRLTPAGVALQRQSRQIVDDIDRLIAQVREADLMNRPAIRI FT GMIDSFAATTGPAIVKRLTQSASQVLVWSGLAYGHAQALLNRQVDIIVTTDALEDVDGL FT VRRPILNEPFVVVAPAVRADEFAPLDLRQMAQAAPFIRFSGRSHFGAMIERHLRRCGVT FT APPFLEIDTSDVVMAMIAANLGWALMTPLCLLQGRSWLDQVVVLPLPGPSLARTLHQVS FT RLEEYQEMADMFWQLSRQALETEIFPQVTTQLPWLGRQMRLC" FT misc_feature 54018..54440 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 54060..54152 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS 55015..55983 FT /transl_table=11 FT /locus_tag="BP3674" FT /product="periplasmic solute-binding protein" FT /note="Similar to Escherichia coli taurine-binding FT periplasmic protein precursor TauA SW:TAUA_ECOLI (Q47537) FT (320 aa) fasta scores: E(): 5.4e-18, 31.84% id in 292 aa, FT and to Rhizobium meliloti putative taurine uptake ABC FT transporter periplasmic solute-binding protein TR:CAC49365 FT (EMBL:AL603645) (339 aa) fasta scores: E(): 1.7e-17, 31.02% FT id in 332 aa" FT /db_xref="InterPro:IPR015168" FT /db_xref="UniProtKB/TrEMBL:Q7VT77" FT /protein_id="CAE43931.1" FT /translation="MAIGAAALALPVAGRSWAAQAEAVRYGGSAWLGHYPAWLAIQAGY FT FKAENLEVGWESFGTTSARVSALLSGNIDMAVTAAPAALAVMSRGSRHFAIIGVPENFG FT RVEGLIVRSQVARLEDLKGKKVGVTFASSAHLLVLNLLDQAGLKAGKDVTVLNVPAPEL FT PAAFQSGQIDAAAAWTPQFNAIRAMPDAKVLVDDTSFSLYKEYGVTPGPDVLVARRAFL FT DKNPEAVKRFLKAYFRANEQLKTQPDATVAALTELTKLSAADQLEMVKGADWYTAAEQG FT ALLAPGSKYIDGLQKLAEMMVRYDQIDKAPPVREWVDAAYL" FT misc_feature 55015..55068 FT /note="Signal peptide predicted for BP3674 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.798 between residues 18 and 19" FT CDS 56047..56817 FT /transl_table=11 FT /locus_tag="BP3675" FT /product="ABC transport system permease protein" FT /note="Similar to Escherichia coli taurine transport system FT permease protein TauC SW:TAUC_ECOLI (Q47539) (275 aa) fasta FT scores: E(): 3.3e-34, 37.34% id in 241 aa, and to FT Pseudomonas aeruginosa probable permease of ABC taurine FT transporter PA3936 TR:Q9HX80 (EMBL:AE004811) (272 aa) fasta FT scores: E(): 1e-37, 39.5% id in 243 aa" FT /db_xref="GOA:Q7VT76" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7VT76" FT /protein_id="CAE43932.1" FT /translation="MNAQNRQRRPDLLLISSVSVIVLLLFWEAVCRLQWVDALFLPPPS FT DVFARIGNMWEQGSLLDHIVASARRVMVGFAAATALAIPLGIFLGTSQRARAAFDPILS FT FLRPLPSMSWIPLSLLWFGITETQKYSIVFMGTFAPALLYVIEATRNIDPLLIRAASNL FT GASGPQVMRSVILPASLPQIFSGFKVILGLSWTCVISAELVAAKEGLGFLIMNGKEFFQ FT TDTVVLGMALISVTVLVTDVVFRIIENRVLAWSR" FT misc_feature join(56080..56139,56257..56316,56353..56421,56434..56490, FT 56593..56661,56719..56787) FT /note="6 probable transmembrane helices predicted for FT BP3675 by TMHMM2.0 at aa 12-31, 71-90, 103-125, 130-148, FT 183-205 and 225-247" FT misc_feature 56488..56721 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT CDS 56826..57596 FT /transl_table=11 FT /locus_tag="BP3676" FT /product="ABC transporter ATP-binding protein" FT /note="Similar to Escherichia coli taurine transport FT ATP-binding protein TauB SW:TAUB_ECOLI (Q47538) (255 aa) FT fasta scores: E(): 3.2e-30, 41.5% id in 253 aa, and to FT Rhizobium loti ATP-binding protein of ABC transporter FT MLL1253 TR:Q98KZ4 (EMBL:AP002997) (267 aa) fasta scores: FT E(): 8.4e-44, 47.65% id in 256 aa" FT /db_xref="GOA:Q7VT75" FT /db_xref="HSSP:1F3O" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VT75" FT /protein_id="CAE43933.1" FT /translation="MISIEGISKSFGPFQALQGVDLKIPRGEFLVVLGASGCGKSTLLN FT LITGFERPTAGRIVVNGREVVDVDPHCGMVFQQYALFPWLTVAENVAFGLKMKGVAAAS FT RRETAQQFIEMVGLKGFENAYPKALSGGMRQRVSIARVLANDPDVILLDEPFAALDAMT FT RQVLQEELTRIYEQSGKTIVFITHSIDEALLLSSRMVIMSARPGRVACDMPNDLPYPRN FT ADVQLSPRYIELKSQIWDIVQNEVMRSLQARADQ" FT misc_feature 56904..57440 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 56925..56948 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 57210..57254 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 57624..58940 FT /transl_table=11 FT /locus_tag="BP3677" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PA4186 TR:Q9HWJ5 (EMBL:AE004835) (439 aa) fasta FT scores: E(): 9.9e-53, 37.26% id in 432 aa, and to FT Agrobacterium tumefaciens hypothetical protein AGR_L_1791p FT TR:AAK89468 (EMBL:AE008288) (468 aa) fasta scores: E(): FT 2.6e-27, 33.18% id in 446 aa" FT /db_xref="GOA:Q7VT74" FT /db_xref="InterPro:IPR006076" FT /db_xref="UniProtKB/TrEMBL:Q7VT74" FT /protein_id="CAE43934.1" FT /translation="MSSPSGSSRTFPQYQSGSGWNAMLPKRTPRTAAPARRHFKSLVIG FT AGYTGLAAARRLAELQPQDQVLVVDATVAGEGSAGRNSGFLINLPHNTRMSGHHSPLEV FT ARKQIAMLQSGLDWLAQLSGQGGFDCGWDLAGKYHAAATADGEQSLRGALQQYGQWGVA FT YSELDRDALQAQLGTRYYRFGYHSMNNVFVQPAALIRGLADSLPENVWLTEDNPVLSID FT GSGPYKVRTRGGEFTADNVILANNAFARRLGFLRSRLVTIFTYAGVTPVLSPAQQALLG FT ERDQWGVIPANRLGTTLRRISGGRFMVRSAYSYEAEQPLERMEQLLRDSFVRRYPDLAA FT HDFEYVWSGSTGLTGNGASFVGAIQPGLYASVGCNGAGVIKGTIYGKLLGEQVAGHRSA FT MLDDLASFEKPNWLPPEPLRRIGALSTIAYQARKAGLEK" FT CDS complement(59065..59205) FT /transl_table=11 FT /locus_tag="BP3678" FT /product="putative exported protein" FT /note="No significant database matches." FT /db_xref="UniProtKB/TrEMBL:Q7VT73" FT /protein_id="CAE43935.1" FT /translation="MRKEEIMKMIAIGAGVMLLAGLVRACQGWRRLLRQLPDRNEDMTL FT F" FT misc_feature complement(59131..59205) FT /note="Signal peptide predicted for BP3678 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.982) with cleavage site FT probability 0.979 between residues 25 and 26" FT CDS complement(59262..59906) FT /transl_table=11 FT /locus_tag="BP3679" FT /product="TetR-family transcriptional regulator" FT /note="Similar to Streptomyces coelicolor positive FT regulator of secondary metabolite formation and sporulation FT CprA TR:O66121 (EMBL:AB000384) (215 aa) fasta scores: E(): FT 0.0019, 25% id in 164 aa, and to Streptomyces coelicolor FT putative TetR-family transcriptional regulator SCK13.32 FT TR:Q9AD73 (EMBL:AL512667) (200 aa) fasta scores: E(): FT 9.3e-12, 30.61% id in 196 aa. Possible alternative FT translational start sites" FT /db_xref="GOA:Q7VT72" FT /db_xref="InterPro:IPR012287" FT /db_xref="UniProtKB/TrEMBL:Q7VT72" FT /protein_id="CAE43936.1" FT /translation="MPGCHFSHDRAKLPGMSIPKSELTFAAIVDAALDMAAAQGMESLT FT LGEVAKRLGISKSGVFSRVGSREALLHAVLQEYDRRFLGAVFAPAMAAPRGLPRLDAMV FT GHWIERAANVEALTGCIYVAGAFEYDDVDNPMRGRVEANVRGWRAALGRTVRQAIDEGH FT LRPDTDPEQLVFEIYSLMVGLMHDARFLRDPRAHERVRQAYARLIATYRNT" FT misc_feature complement(59685..59825) FT /note="HMMPfam hit to PF00440, Bacterial regulatory FT proteins, tetR family" FT CDS complement(59942..62119) FT /transl_table=11 FT /gene="glcB" FT /gene_synonym="glc" FT /locus_tag="BP3680" FT /product="malate synthase G" FT /EC_number="4.1.3.2" FT /note="Similar to Escherichia coli malate synthase G GlcB FT SW:MASZ_ECOLI (P37330) (722 aa) fasta scores: E(): FT 9.7e-182, 63.12% id in 716 aa, and to Mycobacterium FT tuberculosis probable malate synthase G GlcB SW:MASZ_MYCTU FT (Q50596) (741 aa) fasta scores: E(): 5.6e-172, 62.14% id in FT 729 aa" FT /db_xref="GOA:Q7VT71" FT /db_xref="HSSP:1P7T" FT /db_xref="InterPro:IPR006253" FT /db_xref="UniProtKB/Swiss-Prot:Q7VT71" FT /protein_id="CAE43937.1" FT /translation="MTERIPHHGLQVAASLHRFIEDEALSGSGLAPDEFWAGFAALVRD FT LAPRNRELLAERDRLQGEIDAWHRAHPGPVRDSAGYQALLERIGYLQPQPAQVTASTRD FT VDSEIASQAGPQLVVPVSNARYALNAANARWGSLYDALYGTDAIPPVAGDDGKGYNPAR FT GEAVIARARAFLDEAAPLAQGSHADATAYAIEGGKLVVTLGAGQRTGLRNPAQLAGYQG FT DASQPAAVLLANNGLHFEIQIDRQHQIGATDAAGVKDVLLEAALTTIMDCEDSVAAVDA FT DDKVLIYRNWLGLMKGDLSESVTKGGKTFTRRLNADRQYHKPDGGTLTLHGRSLMFVRN FT VGHLMTNPAILDEQGSEVPEGILDAVITSLAALPDRANRLNSRTGSIYIVKPKMHGPAE FT AAFANELFDRVEDLLKLPRHTIKMGIMDEERRTSVNLKACIAAAAARVAFINTGFLDRT FT GDEMHTGMEAGPMLRKGDMKSSAWITAYERNNVLVGLDCGLRGRAQIGKGMWAMPDMMA FT AMLEQKIGHPKAGANTAWVPSPTAATLHAMHYHQVDVAAVQQALEQTRYDSVRDELLAG FT LLTVPVGDPAAWSADDIQRELDNNAQGILGYVVRWIDQGVGCSKVPDINNVGLMEDRAT FT LRISSQHIANWLRHGIVDRAQVNATFERMAKVVDQQNAGDPNYLPMAGHFDTSFAYRAA FT CALVFEGLTQPNGYTEPLLHEYRQAFKAARR" FT CDS join(62363..62968,62970..63128) FT /pseudo FT /transl_table=11 FT /gene="glcC" FT /locus_tag="BP3681" FT /product="GntR-family transcriptional regulator FT (pseudogene)" FT /note="Similar to Escherichia coli glc operon FT transcriptional activator GlcC or b2980 SWALL:GLCC_ECOLI FT (SWALL:P52072) (254 aa) fasta scores: E(): 2.2e-52, 63.82% FT id in 246 aa, and to Pseudomonas aeruginosa transcriptional FT regulator GlcC or pa5356 SWALL:Q9HTK2 (EMBL:AE004947) (251 FT aa) fasta scores: E(): 2.1e-58, 66.53% id in 248 aa" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 202. The sequence has been checked FT and believed to be correct. Similar to Salmonella FT typhimurium pyruvate dehydrogenase complex repressor PdhR FT SW:PDHR_SALTY (Q9L4H9) (254 aa) fasta scores: E(): 3.7e-21, FT 33.74% id in 243 aa, and to Pseudomonas aeruginosa FT transcriptional regulator GlcC TR:Q9HTK2 (EMBL:AE004947) FT (251 aa) fasta scores: E(): 1.2e-58, 66.53% id in 248 aa." FT /db_xref="PSEUDO:CAE43938.1" FT misc_feature 62408..62587 FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT misc_feature 62465..62539 FT /note="ScanRegExp hit to PS00043, Bacterial regulatory FT proteins, gntR family signature. Confirmed by InterPro FT eMOTIF pattern match." FT variation 62967..62968 FT /note="(A)2 in pertussis; (A)1 in parapertussis and FT bronchiseptica" FT CDS complement(63125..64252) FT /transl_table=11 FT /locus_tag="BP3682" FT /product="putative dehydrogenase" FT /note="Similar to Agrobacterium tumefaciens conserved FT hypothetical protein AGR_C_1727p TR:AAK86751 FT (EMBL:AE008025) (366 aa) fasta scores: E(): 3e-75, 54.59% FT id in 359 aa, and to Bacillus stearothermophilus L-lysine FT dehydrogenase LysDH TR:Q9AJC6 (EMBL:AB052732) (385 aa) FT fasta scores: E(): 7.2e-15, 29.25% id in 376 aa" FT /db_xref="GOA:Q7VT70" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VT70" FT /protein_id="CAE43939.1" FT /translation="MVRPPYPIAILGAGKIGAAIALLLQRGGDYDILVADQDPARLQAV FT ARLGCRTAQVRDDDALQQAVSGRYAVLNALPFHRARAAAAACVRAGAHYFDLTEDVAST FT HAIRELAASAGTVLMPQCGLAPGFIGVVGSDLSRRFDRLLDLRMRVGALPRFPSNALRY FT NLTWSTEGLINEYCNACEAIVDGALVAVPPMEGYETFTLDGIEYEAFNTSGGLGTLPQT FT LLGKARNVDYKSIRYPGHCAIMKLLLNDLRLRERRDLLQEILESAIPSTDQDVIVILAS FT ASGYRQQRLVQESFSARIYGATVDGQTLSAIQLSTAAGICTMLDLAVHGHLPQRGFIGQ FT EQVPLAALLDNRYGRIYAGQPLPAREAPQALLPGS" FT CDS complement(64478..64651) FT /transl_table=11 FT /locus_tag="BP3683" FT /product="putative exported protein" FT /note="No significant database matches. Similar to FT N-terminal region of Ralstonia solanacearum probable FT flagellar hook-length control protein FliK TR:CAD17546 FT (EMBL:AL646078) (516 aa) fasta scores: E(): 9.2, 43.59% id FT in 39 aa. Similar to BP0266, BP1766, BP2719, BP3090, and FT BP3731" FT /db_xref="UniProtKB/TrEMBL:Q7VT69" FT /protein_id="CAE43940.1" FT /translation="MKTLATAVILSMTMAAGAQAADLGAEPTRAQVQADLAQAKNDGVV FT TFGNLDYPPQHG" FT variation complement(64532..64534) FT /note="large deletion relative to parapertussis and FT bronchiseptica" FT misc_feature complement(64592..64651) FT /note="Signal peptide predicted for BP3683 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.993 between residues 20 and 21" FT CDS complement(64917..65843) FT /transl_table=11 FT /locus_tag="BP3684" FT /product="UbiA prenyltransferase family protein" FT /EC_number="2.5.1.-" FT /note="Similar to Arabidopsis thaliana para-hydroxy bezoate FT polyprenyl diphosphate transferase AtPPT1 TR:Q9FRU7 FT (EMBL:AB052553) (355 aa) fasta scores: E(): 3e-40, 43.09% FT id in 239 aa, and to Saccharomyces cerevisiae FT para-hydroxybenzoate--polyprenyltransferase, mitochondrial FT precursor Coq2 SW:COQ2_YEAST (P32378) (372 aa) fasta FT scores: E(): 1.4e-37, 40.07% id in 287 aa" FT /db_xref="GOA:Q7VT68" FT /db_xref="InterPro:IPR006370" FT /db_xref="UniProtKB/TrEMBL:Q7VT68" FT /protein_id="CAE43941.1" FT /translation="MSASQQQSVDLNDIVFTDWVERWLPRPWRPYARLCRLDRPIGTWL FT TLLPCIAALVQAAGGLPDLRRLLIFSLGALLMRGIGCTVNDMWDRDIDKHVERTRFRPL FT TSGQLSMRQAVAFLIGQLLVCASLLFFINDMSRWLAVAVLPFVFIYPFCKRVTYWPQVV FT LGICFNWGMLMAWSDTQDHLPLAAIAMWLGAVLWQVGYDSIYAYVDVRDDRSLGLHSTA FT MRFGEQGMLWIGGFYAATLALWTWGGYAMGLGWGYFAGIGAVAIHLAWQLREFDLQRPE FT RNFKLFRANLWTGVLLIAAALAGTLPY" FT misc_feature complement(join(64926..64991,65028..65084,65100..65156, FT 65220..65285,65316..65366,65388..65438,65451..65516, FT 65580..65645,65658..65723)) FT /note="9 probable transmembrane helices predicted for FT BP3684 by TMHMM2.0 at aa 40-62, 66-88, 109-131, 135-152, FT 159-176, 186-208, 229-248, 253-272 and 284-306" FT misc_feature complement(64929..65717) FT /note="HMMPfam hit to PF01040, UbiA prenyltransferase FT family" FT misc_feature complement(65523..65591) FT /note="ScanRegExp hit to PS00943, UbiA prenyltransferase FT family signature." FT CDS complement(65930..67129) FT /transl_table=11 FT /locus_tag="BP3685" FT /product="putative aminotransferase" FT /EC_number="2.6.1.44" FT /note="Similar to Thermococcus litoralis alanine glyoxylate FT transaminase Agt TR:Q9C4M4 (EMBL:AB033996) (407 aa) fasta FT scores: E(): 5.7e-34, 34.76% id in 397 aa, and to FT Pyrococcus abyssi aminotransferase PAB2227 TR:Q9V282 FT (EMBL:AJ248283) (410 aa) fasta scores: E(): 5.1e-68, 47.44% FT id in 392 aa" FT /db_xref="GOA:Q7VT67" FT /db_xref="InterPro:IPR015421" FT /db_xref="UniProtKB/TrEMBL:Q7VT67" FT /protein_id="CAE43942.1" FT /translation="MDKPFEPECSFSERAKQLTSSAIREILKVTERPEVISFAGGLPAP FT GGFPVEVVQAAFDKVLVTNDRAALQYGPTEGYAPLRQWVADDLNAAGANVTADQILIVS FT GSQQALDLLGKVLIDKDSPILVEDPSYLGALQSFSLYQPKYVPIPTDDGGLVPEAITAE FT LAEGARFLYALPNFQNPTGRTLNLERRKALVRQAAQFGVPIIEDDPYGELRYAGEPQPG FT LLALAGECGATVIRLGTFSKVLAPGLRLGYIAAPRNIINKLVQAKQATDLHTPTLTQMA FT VYEVVKTGFLAEHLPRVREIYRVQGRCMLEAIEREFPASVSWTKPEGGMFIWVTLPEHI FT DSTKLLAQAVEQNVAFVPGGPFYAGTPRQNTLRLSFATVPEAKIREGIAILGKLLKAAI FT " FT CDS 67268..67762 FT /transl_table=11 FT /locus_tag="BP3686" FT /product="conserved hypothetical protein" FT /note="Similar to Xylella fastidiosa hypothetical protein FT XF1230 TR:Q9PDZ8 (EMBL:AE003957) (162 aa) fasta scores: FT E(): 6.4e-38, 60.39% id in 154 aa. N-terminal region is FT weakly similar to N-terminus of Escherichia coli xanthosine FT phosphorylase XapA SW:XAPA_ECOLI (P45563) (277 aa) fasta FT scores: E(): 2.1, 29.32% id in 133 aa" FT /db_xref="HSSP:1VHM" FT /db_xref="InterPro:IPR003018" FT /db_xref="UniProtKB/TrEMBL:Q7VT66" FT /protein_id="CAE43943.1" FT /translation="MFDATPISTVSKPVFYAELAAQARALLAGEHDRIANAANFSALVY FT QALPDINWAGFYFHDGQELVLGPFQGKPACVRIALSRGVCGAAASQRRTQVVPDVHAFP FT GHIACDAASRAEIVVPLVHKGSLLGVWDVDSPLPGRFDDEDRAGMEALCEVFLHSLGSA FT D" FT CDS 68044..68877 FT /transl_table=11 FT /locus_tag="BP3687" FT /product="putative dihydrodipicolinate synthase" FT /note="Similar to Nicotiana sylvestris dihydrodipicolinate FT synthase DHDPS-R1 TR:Q42940 (EMBL:X79060) (308 aa) fasta FT scores: E(): 4e-07, 26.61% id in 263 aa, and to Neisseria FT meningitidis dihydrodipicolinate synthase NMA1124 FT SW:DAPA_NEIMA (Q9JUU9) (291 aa) fasta scores: E(): 3.2e-13, FT 32.39% id in 284 aa" FT /db_xref="GOA:Q7VT65" FT /db_xref="HSSP:1O5K" FT /db_xref="InterPro:IPR002220" FT /db_xref="UniProtKB/TrEMBL:Q7VT65" FT /protein_id="CAE43944.1" FT /translation="MPMQYPAQSPFQGIWIPLVTPFADGAVDLPALRRLVRDYKAAGVD FT GLVACGSTGEAAALDEAEQLAVLDAVLEEAGALPVAMGLAGNHQDHVLRRLARLGERPL FT AGVLAPAPLILYDIPYRTGAQLDTATLLALAEHPNIAAVKDCGGSVDKTLALIAHGGMA FT VLAGEDLQGLGTLCLGGTGMIAAAAHVRPDLFVAMHRAVRAQQLGQAQRLFLALAPVIR FT LLFAEPNPAPLKALLASQGRLRNEMRAPMLPAAEALTRRLQAELDVLDRAFAPGA" FT misc_feature 68131..68805 FT /note="HMMPfam hit to PF00701, Dihydrodipicolinate FT synthetase family" FT misc_feature 68179..68232 FT /note="ScanRegExp hit to PS00665, Dihydrodipicolinate FT synthetase signature 1." FT misc_feature 68389..68481 FT /note="ScanRegExp hit to PS00666, Dihydrodipicolinate FT synthetase signature 2. Confirmed by InterPro eMOTIF FT pattern match." FT CDS complement(69061..70104) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3688" FT /product="transposase (Pseudogene)" FT /note="Pseudogene. Transposase for IS481 element. The FT transposase lacks a stop codon, hence it is fused to the FT C-terminal portion of the disrupted CDS" FT /db_xref="PSEUDO:CAE43945.1" FT repeat_region 69155..69185 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(69155..70206) FT misc_feature complement(69190..69723) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region 70175..70206 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(70332..70883) FT /transl_table=11 FT /locus_tag="BP3689" FT /product="putative membrane protein" FT /note="Similar to Escherichia coli hypothetical protein FT YgaU SW:UP04_ECOLI (P39169) (148 aa) fasta scores: E(): FT 1.3e-18, 49.32% id in 148 aa, and to Pseudomonas aeruginosa FT hypothetical protein PA5178 TR:Q9HU11 (EMBL:AE004930) (145 FT aa) fasta scores: E(): 6e-22, 54.11% id in 146 aa. Contains FT LysM (lysin motif) found in bacterial cell wall degradation FT enzymes" FT /db_xref="GOA:Q7VT64" FT /db_xref="InterPro:IPR018392" FT /db_xref="UniProtKB/TrEMBL:Q7VT64" FT /protein_id="CAE43946.1" FT /translation="MKLQDVTSCCITHAAAAPIIVFAINAFFNAQGRKMGLLNFIKEVG FT EKLFGASEAKAATADELKKELDKHGLSAEGLDISVDGDKVTVKGSAASTEAAEKIVLAL FT GNTVGVAQVDNQLQTAQAAPAAVMYTVQKGDTLWKIAEANYGKGKGAKYPTIFEANKPM FT LSDPDKIYPGQVLRIPPLAE" FT misc_feature complement(70347..70499) FT /note="HMMPfam hit to PF01476, LysM domain" FT misc_feature complement(70797..70862) FT /note="1 probable transmembrane helix predicted for BP3689 FT by TMHMM2.0 at aa 7-29" FT CDS complement(70923..71123) FT /transl_table=11 FT /locus_tag="BP3690" FT /product="conserved hypothetical protein" FT /note="Weakly similar to Pseudomonas aeruginosa FT hypothetical protein PA0380 TR:Q9I6B5 (EMBL:AE004475) (66 FT aa) fasta scores: E(): 9.2e-10, 54.54% id in 66 aa, and to FT Caulobacter crescentus hypothetical protein CC1881 FT TR:Q9A745 (EMBL:AE005862) (66 aa) fasta scores: E(): FT 4.8e-09, 50% id in 66 aa" FT /db_xref="GOA:Q7VT63" FT /db_xref="HSSP:1F0Z" FT /db_xref="InterPro:IPR010035" FT /db_xref="UniProtKB/TrEMBL:Q7VT63" FT /protein_id="CAE43947.1" FT /translation="MHITLNGEAREFPLQTTVVELLETLGYQGKRVAVERNGEIVPKSK FT HGDTLLDDGDQIEIVVAVGGG" FT misc_feature complement(70926..71120) FT /note="HMMPfam hit to PF02597, Uncharacterized ACR, FT COG2104" FT CDS complement(71134..72081) FT /transl_table=11 FT /locus_tag="BP3691" FT /product="prolyl iminopeptidase" FT /EC_number="3.4.11.5" FT /note="Similar to Serratia marcescens proline FT iminopeptidase Pip SW:PIP_SERMA (O32449) (317 aa) fasta FT scores: E(): 3.1e-81, 63.34% id in 311 aa, and to Rhizobium FT meliloti putative proline iminopeptidase protein FT TR:CAC45694 (EMBL:AL591786) (316 aa) fasta scores: E(): FT 1.8e-86, 66.77% id in 310 aa" FT /db_xref="GOA:Q7VT62" FT /db_xref="HSSP:1AZW" FT /db_xref="InterPro:IPR005944" FT /db_xref="UniProtKB/TrEMBL:Q7VT62" FT /protein_id="CAE43948.1" FT /translation="MLYPPIEPYRQGTLDTGDGHQVYWELCGNPQGKPAVFLHGGPGSG FT CSPVHRQLFDPRRYNVLLFDQRGCGRSLPHASLENNTTWHLVADIEHLRAEVMGAERWL FT VFGGSWGSTLALAYAQAHPQHVSELVVRGIFGLRRAEVQWFYQEGASWLFPDRWEEYVA FT PIPPEERGDLIAAYHRRLTGDDPAEQLRAAKAWSRWEDHTITLLPSPRYQQSHAVDRAA FT LAFARIENHYFVHAGFMEEGQLIRDAHKLHGIPGTIVQGRYDVCTPARIAWDLHRAWPQ FT AQFHLIPDAGHAFDEPGILARLIQATDTYAANPA" FT misc_feature complement(71140..71907) FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold" FT misc_feature complement(71470..71496) FT /note="ScanRegExp hit to PS00037, Myb DNA-binding domain FT repeat signature 1." FT CDS complement(72082..72846) FT /transl_table=11 FT /locus_tag="BP3692" FT /product="putative methyltransferase" FT /note="Similar to Neisseria meningitidis hypothetical FT methyltransferase NMA1542 SW:MT04_NEIMA (Q9JU19) (238 aa) FT fasta scores: E(): 1.7e-47, 56.14% id in 228 aa, and to FT Streptomyces coelicolor hypothetical methyltransferase FT SCD17A.03c SW:MT04_STRCO (Q9F305) (271 aa) fasta scores: FT E(): 1.1e-42, 49.61% id in 258 aa" FT /db_xref="GOA:Q7VT61" FT /db_xref="InterPro:IPR003358" FT /db_xref="UniProtKB/Swiss-Prot:Q7VT61" FT /protein_id="CAE43949.1" FT /translation="MNTNTPAHPPEGAPLSEATQAALASAEHAPDSPGATHIRSFVHRR FT GHITQRQRDALEQLMGKWSVPYAPRPLDMAAAFGRQAPTILEIGFGMGETTEKIALARP FT GDNFLGVEVFNAGVGSLLHRIEESAISNLRIVQHDAVEVVRDMIAPDSLAGVHVYFPDP FT WPKKRHHKRRLLQPPFVALLASRLAPGGYLHCATDWEDYAVQMLEVLGGEPLLRNTADG FT YAPRPDFRPQTKFETRGLRLGHGVWDLMFKRA" FT misc_feature complement(72085..72660) FT /note="HMMPfam hit to PF02390, Putative methyltransferase" FT CDS 72940..73839 FT /transl_table=11 FT /locus_tag="BP3693" FT /product="LysR family regulatoy protein" FT /note="Similar to Rhodobacter capsulatus LysR-type FT transcriptional activator CbbRI TR:O34014 (EMBL:U87283) FT (298 aa) fasta scores: E(): 1.1e-17, 31.89% id in 301 aa, FT and to Pseudomonas aeruginosa probable transcriptional FT regulator PA0877 TR:Q9I568 (EMBL:AE004522) (298 aa) fasta FT scores: E(): 3.7e-42, 42.21% id in 289 aa" FT /db_xref="GOA:Q7VT60" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VT60" FT /protein_id="CAE43950.1" FT /translation="MNPARFDLVTLALFVAVARQGSISAGARQSHLAVGAASKRISDLE FT SALGTPLLYRTAAGVELTDAGQACLAHAVRVLQEVEHMAGVLSDFAQGVRGQVRIAANT FT SSITQFLPEDLAGFMQRHPAVRIHLEEQNSSDIVTAVAENRADVGIFADRTPAAGLTTV FT PYRLDELVLITPPRHPLAARAQVAFADTLDCDYVGLPPATSLATRLADESARLDKRIRL FT RIQVRSFDAICRMVVATGGVGILPRIAAEPHARSMQVRLIPLADDWAQRWLLLGVRDLD FT SLPVAARLLVRSLAEGAA" FT misc_feature 72961..73389 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 73003..73095 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS join(73883..74857,74860..75144) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3694" FT /product="conserved hypothetical protein (pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 325. The frameshift occurs within FT a dimeric tract of (AG)2. The sequence has been checked and FT believed to be correct. Similar to Thauera aromatica FT subunit of succinyl-CoA:benzylsuccinate CoA-transferase FT BbsF TR:Q9KJE9 (EMBL:AF173961) (409 aa) fasta scores: E(): FT 3.2e-30, 32.46% id in 385 aa, and to Pseudomonas aeruginosa FT hypothetical protein PA3733 TR:Q9HXQ9 (EMBL:AE004792) (409 FT aa) fasta scores: E(): 2e-78, 53.06% id in 392 aa." FT misc_feature 74162..74731 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family" FT variation 74858..74861 FT /note="(AG)2 in pertussis; (AG)1 in parapertussis and FT bronchiseptica" FT CDS 75147..76094 FT /transl_table=11 FT /locus_tag="BP3695" FT /product="putative hydroxymethylglutaryl-CoA lyase" FT /EC_number="4.1.3.4" FT /note="Similar to Rattus norvegicus FT hydroxymethylglutaryl-CoA lyase, mitochondrial precursor FT HMGCL SW:HMGL_RAT (P97519) (325 aa) fasta scores: E(): FT 5.1e-38, 41.17% id in 272 aa, and to Bacillus subtilis FT hypothetical protein YngG TR:O34873 (EMBL:Z99113) (299 aa) FT fasta scores: E(): 2.6e-44, 48.17% id in 274 aa" FT /db_xref="GOA:Q7VT59" FT /db_xref="InterPro:IPR000891" FT /db_xref="UniProtKB/TrEMBL:Q7VT59" FT /protein_id="CAE43952.1" FT /translation="MKGPPRIEINEVGPRDGLQIERALVATDDKVAFVDALSACGFARI FT EVTSFTSPKAIPALADAQDVMRRIARRPGVVYTALIPNIRGLERALEAGTDEMNLVMSC FT SETHNRANLRMTRDQSFDELAAILRRAGEAGVPCNVSLSTAFGCPFDGDVPAGDVMRLA FT RRLADAGAQGITLCDTTGMAYPTQVAQLCETFQRALPGAALTVHLHNTRGMALVNAVAA FT WQTGVTRFDAAAGGLGGCPYAPGASGNVNTEEIVHMFACMGVATGVALAPLLDIVHGLP FT GLVQRALTNPLLAAGPRLATHQPPAWLAERFPAA" FT misc_feature 75189..76016 FT /note="HMMPfam hit to PF00682, HMGL-like" FT CDS 76142..76981 FT /transl_table=11 FT /locus_tag="BP3696" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT SMA1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: FT E(): 1.7e-36, 43.35% id in 256 aa, and to Agrobacterium FT tumefaciens AGR_L_312p TR:AAK88723 (EMBL:AE008213) (329 aa) FT fasta scores: E(): 2e-33, 39.4% id in 269 aa" FT /db_xref="GOA:Q7VT58" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VT58" FT /protein_id="CAE43953.1" FT /translation="MHLAKLRLLRGAALAAALAATLAAGASGGIAGQMVARAQPDGYTL FT LLQYSGFQAITPHVSSNLGWDPIKDFAPVANVLSAPQVVVVRPDLPIKTLKDLVDYAKA FT NPGKLNYASSGNGSLQQVATELLNQMAGIQITHIPYKGTGPALNDLLGGAVDLTITTPP FT PLLGHIAAGKLRALAVTGDKRLPSLPDVPTAAEAGYPDLIVSSWFAMYAPAGTPPAIVE FT KLSGEIRKIMATEAFRQKAAEQGAEARYMDPKQLGAYTQEELDRWGKVVKAAHISAN" FT misc_feature 76142..76219 FT /note="Signal peptide predicted for BP3696 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.429 between residues 26 and 27" FT tRNA 77079..77152 FT /note="tRNA Gly anticodon CCC, Cove score 77.64" FT variation complement(77315..77317) FT /note="CAG in pertussis; TAG stop codon in parapertussis FT and bronchiseptica" FT CDS complement(77318..77656) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3697" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS lacks a stop codon. The FT sequence has been checked and believed to be correct. FT Similar to Rhizobium loti hypothetical protein MLL3526 FT TR:Q98G19 (EMBL:AP003002) (156 aa) fasta scores: E(): FT 5.6e-23, 69.23% id in 78 aa near C-terminus, and to FT Yersinia pestis putative transposase y0084 or ypcd1.93 FT TR:O68709 (EMBL:AF053946) (88 aa) fasta scores: E(): 0.04, FT 46.34% id in 41 aa near N-terminus" FT CDS complement(77695..78645) FT /transl_table=11 FT /locus_tag="BP3698" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE43955.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 77695..77726 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(77695..78747) FT misc_feature complement(77731..78264) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(78716..78747) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 78784..79614 FT /transl_table=11 FT /locus_tag="BP3699" FT /product="GntR family transcriptional regulator" FT /note="Weakly similar to Rhizobium loti transcriptional FT regulator MLL4768 TR:Q98DC1 (EMBL:AP003004) (260 aa) fasta FT scores: E(): 1.1e-06, 24.49% id in 245 aa, and to FT Agrobacterium tumefaciens AGR_L_2068p agr_l_2068 FT TR:AAK89608 (EMBL:AE008303) (327 aa) fasta scores: E(): FT 1.2e-06, 26.31% id in 228 aa. Possible alternative FT translational start sites. Also similar to BP3702, 45.353% FT identity (46.743% ungapped) in 269 aa overlap." FT /db_xref="GOA:Q7VT57" FT /db_xref="InterPro:IPR000524" FT /db_xref="UniProtKB/TrEMBL:Q7VT57" FT /protein_id="CAE43956.1" FT /translation="MLMNTSLRRSTPAGGQIVVNAERPAVFDQLHRPNYSGIPKYRLVL FT NAIAEGIESGHWKPGERLPTEDDLVQMTSYSLGTVQRALRILVDQGLVVREHGLGTFVA FT QQLLRIQDPWHCRFLADDGVGFLPVYSTIISRDYASGEGEWQRYFDTAAGAQVILIERT FT INVGNEFEVFTRFYVDRNVFPSLWDTPMEKLNGLNFKKQITQELNVPVTKIDHFVAMEP FT FDPTVAGYTKTPPYAAGIALQVVACMGQERCIYYQKFFIPPTKRVLSIPDQLTD" FT misc_feature 78913..79092 FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT CDS complement(79627..80619) FT /transl_table=11 FT /locus_tag="BP3700" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT SMA1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: FT E(): 3.7e-37, 37.23% id in 325 aa, and to Agrobacterium FT tumefaciens AGR_L_312p TR:AAK88723 (EMBL:AE008213) (329 aa) FT fasta scores: E(): 2.9e-35, 35.86% id in 329 aa" FT /db_xref="GOA:Q7VT56" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VT56" FT /protein_id="CAE43957.1" FT /translation="MRSISLHLRRALAVLGLAGIAAAAPLHAAETWPDRPVRLIVPYPA FT GGGVDFAARLIASDLSKQTGQNFIVENRTGAAGTIGAQAVVQSTADGNTVLFASPAEVL FT VSRIAGQKTSYDAGKDLQPVTLAGETPLAVVVNPAVPARTLAELVALARKDPSAISYGT FT PGTGSTMQFAGEALNLAAGIKMLHVPYRGAAPAIADLLGNQIPVAIVGVPPLVAHHKSG FT KLRILAVTGSQRIAALPDVPTVAEELGVADYRYTNWFGVYVPGNTPAAVGDRLAALIHA FT SVHRDAIKAQLAEQGVEPIGNTTPEFVRFLADEKARYETVQRKSGIQMD" FT misc_feature complement(80536..80619) FT /note="Signal peptide predicted for BP3700 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 28 and 29" FT CDS complement(80800..81849) FT /transl_table=11 FT /locus_tag="BP3701" FT /product="putative exported protein" FT /note="Similar to Bacillus subtilis putative aliphatic FT sulfonates binding protein precursor SsuA SW:SSUA_BACSU FT (P40400) (332 aa) fasta scores: E(): 2.1e-12, 28.88% id in FT 270 aa, and to Rhizobium loti taurine transport system FT periplasmic protein MLR4517 TR:Q98DW7 (EMBL:AP003004) (337 FT aa) fasta scores: E(): 2.5e-10, 25.07% id in 351 aa. Also FT similar to BP3704, 53.666% identity (54.464% ungapped) in FT 341 aa overlap" FT /db_xref="GOA:Q7VT55" FT /db_xref="InterPro:IPR007210" FT /db_xref="UniProtKB/TrEMBL:Q7VT55" FT /protein_id="CAE43958.1" FT /translation="MTSKQGRHTAFLTKAAATAVLAAGSAASLAADPPKPLKINYGAPT FT ADYYTLYVAKDHGLFEKHGLEPNFFWFASGAPLLAGLKSESLDVFITGLASAFALGQNL FT PVKLLFWQLDDAPGQGLVVSKDSGIDSYRDLKKAKAIGTPSGTCAQVALGLMARKAGIA FT MKELNVVNIAPPLYANAFTSNSIDAGVTWAPYLQSVAERGYKIVNYDTDYDGICPVMTG FT ARTKFLQEHPDVGLKLVQISAEAQRMVADNPQLAIDVLEKYLKVSPAVAKATYERLCCG FT NFPTFRQQADPESPYSLVSDKGIVAKLHTATQILAEAGTIPQAISRETVAASIDASYVR FT QYLATQPGQ" FT misc_feature complement(81760..81849) FT /note="Signal peptide predicted for BP3701 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.991 between residues 30 and 31" FT CDS complement(81903..82694) FT /transl_table=11 FT /locus_tag="BP3702" FT /product="GntR-family transcriptional regulator" FT /note="Similar to Pseudomonas putida histidine utilization FT repressor HutC SW:HUTC_PSEPU (P22773) (248 aa) fasta FT scores: E(): 3.5e-06, 27.38% id in 252 aa, and to FT Pseudomonas syringae HutC-like protein TR:Q9AGU6 FT (EMBL:AF326719) (249 aa) fasta scores: E(): 2.8e-07, 26.64% FT id in 274 aa. Also similar to BP3699, 45.353% identity FT (46.743% ungapped) in 269 aa overlap." FT /db_xref="GOA:Q7VT54" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VT54" FT /protein_id="CAE43959.1" FT /translation="MDTDAIRSEIFGQLARPDNSGIPKYRRLSNILVEAIRRGVWQPGD FT RLPAEEQLTEMTPFSLGTVQRALRALTDEGLVIRMQGHGNFVADQQRQMADPWHCRFLD FT DESDGIVPIYSKAVQRAVVTPSETGPWQRYLHSGSVMRLDRIINVNDEFRIFSRFYADR FT ELLQPLWHVPLEELDGANFKDIIMRQVGLPITEIDRSVRIRRIDAQAARLIGVAPEATV FT LFMQAVARAGRDACIYYQEFYIPETGRALQLPEQRPRVHGR" FT misc_feature complement(82434..82601) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT CDS complement(82756..83553) FT /transl_table=11 FT /locus_tag="BP3703" FT /product="putative transport system permease protein" FT /note="Similar to Escherichia coli taurine transport system FT permease protein TauC SW:TAUC_ECOLI (Q47539) (275 aa) fasta FT scores: E(): 1.9e-33, 36.32% id in 256 aa, and to FT Pseudomonas aeruginosa probable permease of ABC taurine FT transporter PA3936 TR:Q9HX80 (EMBL:AE004811) (272 aa) fasta FT scores: E(): 1.4e-30, 37.34% id in 241 aa" FT /db_xref="GOA:Q7VT53" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7VT53" FT /protein_id="CAE43960.1" FT /translation="MSERVAVEGRQPAISPTVFSVASVVGLLAIWTLVTNLGLVGPGYL FT PSPQAMFAQLVTLVEQGYGGKPLWDHVGASLFCALVGFAIGVLAGVPFGLFSGYHKAVG FT AMMSPIMAFIRPIPPIAFIPMAVLYFGLGEMGKVVLIVFTAFNYSFVSAQAGALSVPMS FT YYRAAESIGMTRLQIFWRVVFPSSIPHIFTGLKVAMALSWAVVVAAELVGAQKGLGFMI FT SDAAQLFQIPVVFIGIALIGLIGLVLNVMLTVAEEKIVHWKGR" FT misc_feature complement(join(82804..82869,82915..82980,83074..83139, FT 83155..83220,83260..83325,83449..83514)) FT /note="6 probable transmembrane helices predicted for FT BP3703 by TMHMM2.0 at aa 13-35, 76-98, 111-133, 138-160, FT 191-213 and 228-250" FT misc_feature complement(82873..83088) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT CDS complement(83550..84602) FT /transl_table=11 FT /locus_tag="BP3704" FT /product="putative transport system periplasmic protein" FT /note="Similar to Rhizobium loti taurine transport system FT periplasmic protein MLR4517 TR:Q98DW7 (EMBL:AP003004) (337 FT aa) fasta scores: E(): 7e-07, 25.44% id in 334 aa> FT N-terminus is similar to the N-terminal region of Bacillus FT subtilis putative aliphatic sulfonates binding protein FT precursor SsuA SW:SSUA_BACSU (P40400) (332 aa) fasta FT scores: E(): 1.1e-09, 28.33% id in 240 aa. Also similar to FT BP3701, 54.227% identity (55.689% ungapped) in 343 aa FT overlap" FT /db_xref="UniProtKB/TrEMBL:Q7VT52" FT /protein_id="CAE43961.1" FT /translation="MQSCLRLAASLLSAALLCLPAPGAAQTASPAKKELLKFNWGAPTA FT DYYALYVAKDQKLFEEVGLEPNFYFFPSGAPLLAGLKSKSLDVITTGLATVFALGQNVP FT LKLIYWELDHAAAEGLVVDPAAGIKSYKDIAKAKAIGAPSGTCAQVSLVLMAKELNLKY FT SNLNIINIAPPLYGNAFKSKSIQAAVAWSPYSSILNADQLPVVNWASDYTPDQGVCPGL FT TGVRTEFMQQHPDIGLKLVQVQAKAMDMIRKDPELGIGVLMKYLSVSREVAKHIYDREF FT SRIPTYAQQIDPASPYSLAAKDAGLARKLLIASQALAEVGTIPAPLTPQAIAEAIDPSA FT IQRYMKGERK" FT misc_feature complement(84528..84602) FT /note="Signal peptide predicted for BP3704 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.688 between residues 25 and 26" FT CDS complement(84630..85499) FT /transl_table=11 FT /locus_tag="BP3705" FT /product="ABC transporter ATP-binding protein" FT /note="Similar to Escherichia coli taurine transport FT ATP-binding protein TauB SW:TAUB_ECOLI (Q47538) (255 aa) FT fasta scores: E(): 4.8e-33, 44.04% id in 252 aa, and to FT Rhizobium loti ATP-binding protein of ABC transporter FT MLL1253 TR:Q98KZ4 (EMBL:AP002997) (267 aa) fasta scores: FT E(): 2.1e-43, 49.07% id in 271 aa" FT /db_xref="GOA:Q7VT51" FT /db_xref="HSSP:1G29" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VT51" FT /protein_id="CAE43962.1" FT /translation="MHGTRQVRRSAQARPGASQDNQVKISFQGVSKTYGGRGRSGNRTL FT ALDRMDVDIKAAEIVTVLGPTGCGKSSTLNLIAGFEQTSTGSLLIDGKPIDGPGPDRAV FT VFQQPSLFPWLTVMENITLGVKCRGVPKDTYEPRAQMLLREVGLSGFEKHYPYQLSGGM FT QQRVQIARALISEPKVLLLDEPFGALDYQTRILMQELLLQLWQEHKPTIFFITHDVSEA FT IFVADRVLVMSHRPGRIKLAVNVDADKPRNADFLSTPEFISLQRDLLHAVQEEVHANKN FT RPPMAKAA" FT misc_feature complement(84795..85331) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(84981..85025) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(85287..85310) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(86019..86792) FT /transl_table=11 FT /locus_tag="BP3706" FT /product="putative enoyl-CoA hydratase/isomerase family FT protein" FT /EC_number="4.2.1.55" FT /note="Similar to Clostridium acetobutylicum FT 3-hydroxybutyryl-CoA dehydratase Crt SW:CRT_CLOAB (P52046) FT (261 aa) fasta scores: E(): 6.5e-26, 38.95% id in 249 aa, FT and to Thauera aromatica putative E-phenylitaconyl-CoA FT hydratase BbsH TR:Q9KJE7 (EMBL:AF173961) (256 aa) fasta FT scores: E(): 9e-28, 39.84% id in 256 aa" FT /db_xref="GOA:Q7VT50" FT /db_xref="HSSP:1HZD" FT /db_xref="InterPro:IPR018376" FT /db_xref="UniProtKB/TrEMBL:Q7VT50" FT /protein_id="CAE43963.1" FT /translation="MARADDIEVRVADQVAWVTINRPQRMNALARATFAQLVEVSLELD FT QDPGVKVVVYTGAGERAFSAGVDLKELDAAGRMTHPMGGLARNLNEVVLEMATPTIAAI FT NGVAAGGGCELALACDIRVAASTARIGLPEARVGMGANFGSVVLPQLIPRGVALELLYT FT GELIDMALAHRLGLVNHVFEPAELMAQTAGLARRIADNAPLSVQRMKAMAFKSIGLPTA FT AALRLSVGPDPYNSEDRLEGARAFVEKRKPRFQGR" FT misc_feature complement(86244..86747) FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT misc_feature complement(86430..86492) FT /note="ScanRegExp hit to PS00166, Enoyl-CoA FT hydratase/isomerase signature. Confirmed by InterPro eMOTIF FT pattern match." FT CDS complement(86794..87759) FT /transl_table=11 FT /locus_tag="BP3707" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni hypothetical FT protein Orf4 TR:Q9S155 (EMBL:AB024335) (325 aa) fasta FT scores: E(): 4.6e-34, 36.36% id in 319 aa, and to Rhizobium FT meliloti hypothetical protein SMA1927 TR:AAK65716 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 8.8e-36, 36.65% FT id in 311 aa" FT /db_xref="GOA:Q7VT49" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VT49" FT /protein_id="CAE43964.1" FT /translation="MFKRIALMGAAAMLAAAPAVHAQDKYPSRPITLVSPYQAGGTTET FT FARLIIDDVAAILGQPIVVEQKPGAAGTIGARFVATSKGDGYTLLANTSQHVMYEGMFK FT NLPFRPMEGFRPVGVLGSAPIIVVTGENSPYKTFKDVLEAARTRNLTFASGAQGSLPHL FT TGERVAVQGKLNMTHVPFSGTAPALTNVMGGHVDLLYSTAASVMSQIRADKLRALAVST FT KERMPELPDVPSIAEMGMPGFDVTAWYAVWAPRDTRPEVVDAINQAMREASARPKAKKR FT MAALSVTPSTLTAAQFAAFAESERKTWLDVMRRANMQPAN" FT misc_feature complement(87694..87759) FT /note="Signal peptide predicted for BP3707 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 22 and 23" FT CDS complement(87812..88816) FT /transl_table=11 FT /locus_tag="BP3708" FT /product="putative zinc-binding dehydrogenase" FT /note="Similar to Caulobacter crescentus zinc-containing FT alcohol dehydrogenase CC0770 TR:Q9AA38 (EMBL:AE005752) (325 FT aa) fasta scores: E(): 8.5e-43, 43.71% id in 334 aa, and to FT Rhodocyclus gelatinosus hypothetical protein TR:Q9JP93 FT (EMBL:AB034704) (326 aa) fasta scores: E(): 1.7e-42, 42.9% FT id in 331 aa" FT /db_xref="GOA:Q7VT48" FT /db_xref="HSSP:1IYZ" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VT48" FT /protein_id="CAE43965.1" FT /translation="MKAVVCREYGGPDVAAYEEVPAPALAPGAVRIQVQACSASFASLL FT VMEGKHQNRAPLPLIPGTEVAGVVTELGAGATRFRVGDRVIAGVQSGCYAQEVVAPEAT FT VFELPADVPFETGAQFPTIYGTAYGALQWRAQVEPGEVVLVHGAAGGSGLAAVEVAKAL FT GATVISTVGSDAKQAIVREHGADHAINYRTQDWRAEVLRLTGQRGADVIYDPVGGETFD FT ASLRCIAPDGRIIPMGFASGAIPTVPANIVLVKNISILGVYWGYYFGWGRHPVRPGNDA FT RLRAAYARLFEWTRQGRIRPRAHAVVPLADFRTALRMIASREAIGRIVMQPQQ" FT misc_feature complement(87821..88777) FT /note="HMMPfam hit to PF00107, Zinc-binding dehydrogenases" FT CDS complement(88813..90006) FT /transl_table=11 FT /locus_tag="BP3709" FT /product="putative racemase" FT /note="Similar to Rhodococcus sp. AD45 putative racemase FT IsoG TR:Q9RBP6 (EMBL:AJ249207) (405 aa) fasta scores: E(): FT 1.1e-50, 38% id in 400 aa, and to Streptomyces coelicolor FT putative racemase SCF41.21 TR:Q9RJU8 (EMBL:AL117387) (403 FT aa) fasta scores: E(): 4.8e-41, 37.56% id in 402 aa. FT Similar to BP0416, 52.525% identity (53.061% ungapped) in FT 396 aa overlap" FT /db_xref="GOA:Q7VT47" FT /db_xref="HSSP:1Q7E" FT /db_xref="InterPro:IPR003673" FT /db_xref="UniProtKB/TrEMBL:Q7VT47" FT /protein_id="CAE43966.1" FT /translation="MDGPLSGVRVLDMTAALSGPVATQILGDMGAEVIKIEPPEGDSIR FT DLGPARHRGMGAMFLHTNRSKRSIMLDLNLEGGRDAFRRLAGAADVFVCNTRPKAMARL FT GLAYADIAALNPALVYLNIVGYGSAGTHADKPAYDDLIQAAAGIASLRADGDPARYAPI FT ALADRVTGILAANAVLGALYHRARTGAGQHIEVPMFESIASLVLADHMAGLSFEPPIGP FT PVFDRYASIRRPFQTRDGFLCMMVLTDRQWREFFRAVGRPEVMDDDRFGTMAQRTRNLE FT ALYAIVSAIMATRDTDAWVAHLEAADIPVARIESVASLTAHPHLAQAGFFQTVEHPTEG FT PIRSMACASTWSATQPAPTRPAPRLGEHNLEILREAGFSEEQTQAMFASGAARGYES" FT misc_feature complement(89242..89802) FT /note="HMMPfam hit to PF02515, CAIB/BAIF family" FT CDS 90297..91010 FT /transl_table=11 FT /locus_tag="BP3710" FT /product="TetR-family transcriptional regulator" FT /note="Similar to Mycobacterium tuberculosis hypothetical FT protein MTV032.01 TR:O53641 (EMBL:AL021927) (214 aa) fasta FT scores: E(): 1.4e-07, 30.39% id in 204 aa, and to FT Streptomyces coelicolor putative TetR transcriptional FT regulator SCI30A.12c TR:Q9S261 (EMBL:AL096811) (251 aa) FT fasta scores: E(): 3.3e-05, 29.26% id in 205 aa" FT /db_xref="GOA:Q7VT46" FT /db_xref="InterPro:IPR012287" FT /db_xref="UniProtKB/TrEMBL:Q7VT46" FT /protein_id="CAE43967.1" FT /translation="MHPVRTTLPADAVLLTPELENWVGIDYDDMPAVQRKLLDAAAKAF FT TTYGFAATSIDVIASQIGATKGSVYYHYRSKTDLFFAVHKCAMVMNLKAQVPVAFDASL FT DPRAKLYRMAYLHAMLMMDSLYYQRVTVQGVELHQSVSTTPMEREALAEVIAMRDVYEG FT LFSQVVRDGMASGHFAEADHSIAAKGILGILNWITVWYRPRETESPGFRQRVATQLATQ FT ATQAIQGIARADTRG" FT misc_feature 90405..90545 FT /note="HMMPfam hit to PF00440, Bacterial regulatory FT proteins, tetR family" FT CDS complement(91035..91802) FT /transl_table=11 FT /gene="nudC" FT /locus_tag="BP3711" FT /product="NADH pyrophosphatase" FT /EC_number="3.6.1.-" FT /note="Similar to Escherichia coli NADH pyrophosphatase FT NudC SW:NUDC_ECOLI (P32664) (257 aa) fasta scores: E(): FT 2.8e-27, 46.98% id in 166 aa. Similar to Pasteurella FT multocida NADH pyrophosphatase PM1735 SW:NUDC_PASMU FT (P57965) (264 aa) fasta scores: E(): 5e-31, 39.18% id in FT 245 aa" FT /db_xref="GOA:Q7VT45" FT /db_xref="InterPro:IPR015376" FT /db_xref="UniProtKB/TrEMBL:Q7VT45" FT /protein_id="CAE43968.1" FT /translation="MIFIFRGDELLVRESGVDLPDGDTCAQVGVRFELMQQIWLTHDPQ FT LRTTHVARDTVAPPGYAFRKLRALLSELGERAPLAGRAFQIAEWVRTHRYCGVCATPMQ FT HARHELCLQCPACGLHAYPRVSPAMMVLIKRGEHILLARHARYATARYTALAGFVEVGE FT SIEDAVHREVEEEVGLRVRDLRYFGSQSWPFPHSLMIAFTAEYAGGDLRVQEDEITEAR FT WFGPGEPLPDIPMRESIAGRLVRANLPPGMASD" FT misc_feature complement(91065..91433) FT /note="HMMPfam hit to PF00293, MutT-like domain" FT misc_feature complement(91269..91334) FT /note="ScanRegExp hit to PS00893, Nudix hydrolase FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(91883..92827) FT /transl_table=11 FT /locus_tag="BP3712" FT /product="putative oxidoreductase" FT /note="Similar to Pseudomonas pseudoalcaligenes FT phenoxybenzoate dioxygenase beta subunit PobB SW:POBB_PSEPS FT (Q52186) (319 aa) fasta scores: E(): 4.9e-32, 40.88% id in FT 318 aa, and to Pseudomonas sp CA10 reductase component FT TR:Q9AQN2 (EMBL:AB047548) (315 aa) fasta scores: E(): FT 2.9e-44, 49.13% id in 289 aa" FT /db_xref="GOA:Q7VT44" FT /db_xref="HSSP:1GVH" FT /db_xref="InterPro:IPR000951" FT /db_xref="UniProtKB/TrEMBL:Q7VT44" FT /protein_id="CAE43969.1" FT /translation="MKLVVRAVTPLTAEIRHFELAAPDGAALPAYTPGAHLSVHVVLPD FT GTPARREYSLLGDGSATASYEIAVQCREPAAGSAWMHRLAPGDRIEAEAPVNAFALAAD FT AAEHVLIAGGIGITPILSMARHLRGAGAAFTLHYAGRARAAMAFAEEAAAMGAACRLYH FT DDGAPLHEALPNILAAPAPGRHLYVCGPRALIADTVDGAAAAGWPPASVHYELFQGALA FT LRGDQPFDLVLRQSGITVSVPAGQIMLDALLQAGVEPLYDCRRGECGMCLTPVLEGKPD FT HRDHYLSPREREAGDAVCVCVSRACGASLTLDL" FT misc_feature complement(91907..92146) FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain" FT misc_feature complement(92015..92041) FT /note="ScanRegExp hit to PS00197, 2Fe-2S ferredoxins, FT iron-sulfur binding region signature." FT CDS complement(92824..94128) FT /transl_table=11 FT /locus_tag="BP3713" FT /product="putative amidase" FT /note="Similar to Pseudomonas putida amidase SW:AMID_PSEPU FT (O69768) (466 aa) fasta scores: E(): 1.1e-18, 32.71% id in FT 434 aa, and to Bradyrhizobium japonicum malonamidase E2 FT TR:Q9ZIV5 (EMBL:AF012735) (432 aa) fasta scores: E(): FT 1.1e-39, 39.53% id in 387 aa. Also similar toBP0130, FT 45.679% identity (47.804% ungapped) in 405 aa overlap." FT /db_xref="GOA:Q7VT43" FT /db_xref="InterPro:IPR000120" FT /db_xref="UniProtKB/TrEMBL:Q7VT43" FT /protein_id="CAE43970.1" FT /translation="MTSLHRAPPLSAHTTRAAVLDGHASAELLEPCLAAIRAHEPVVRA FT WRELDVDAARAQARRLDTHAARGLLAGVPIAVKDIFLTEQFPTRYGSPIYEHGIAGTDA FT DCVARARAAGALVLGKTVTTEFAYFTPGPTANPRDPSRTPGDSSSGSAAAVAAGMVPLA FT FGSQTAGSLIRPASYCGVFALKPTHGLHSLAGAKAMAPSLDTLGWLARDAGDLELMRCA FT LAGEDYRPLPDARPAALRLGICLTHEWHAIEPDGAQAFAHAQVLCTAAGAQLAPLVLPD FT ALQGLMQAQQTIMAYEAARSLAAEWRDARARLSPAMQALIEAGLGCDAQSYAQALALAA FT RGRAHLEHAMRDLDAVIAPAAPGEAPPGLARTGDPIFSRVWTLLGLPCVNVPGLAGPHG FT MPIGVQLIGRPGDERRLLAVAAALHRVFHPTGAPQ" FT misc_feature complement(92878..94050) FT /note="HMMPfam hit to PF01425, Amidase" FT misc_feature complement(93766..93789) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(94125..94970) FT /transl_table=11 FT /locus_tag="BP3714" FT /product="putative zinc-binding dehydrogenases" FT /note="No significant database matches to the full length FT CDS. C-terminal region is similar to an internal region of FT Pseudomonas aeruginosa probable oxidoreductase PA5234 FT TR:Q9HTV6 (EMBL:AE004936) (325 aa) fasta scores: E(): FT 2.8e-05, 27.45% id in 204 aa, and Pseudomonas aeruginosa FT probable oxidoreductase PA3256 TR:Q9HYY4 (EMBL:AE004748) FT (320 aa) fasta scores: E(): 9.5e-05, 26.75% id in 228 aa" FT /db_xref="GOA:Q7VT42" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VT42" FT /protein_id="CAE43971.1" FT /translation="MRRVPENLFATRYRGSAAMTIGIAPMPSPRLRVRVQACLGDAGGL FT RLPGVAFIGSAGPGRRVAALATQAAAPGADIEIDAGQAWTVADGLDEQSALLLAVLWPS FT AWIALVEIGGLRAGQQVLVHEADTPLGLLATVLARQADASVIAAARTAGGIAAALRAGA FT AEGVLYGDPWPELAREHGGADLVFDPGAGRYAVASLPCARRRARMLALDMHDGPAGPPI FT GAAQLLRRQTSLAAAGWDLVRDAPALQRACRALPPHWPRIAALLPLRPLSLSTSQEALP FT " FT misc_feature complement(94134..94925) FT /note="HMMPfam hit to PF00107, Zinc-binding dehydrogenases" FT CDS 95039..95953 FT /transl_table=11 FT /locus_tag="BP3715" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Erwinia chrysanthemi hydrogen FT peroxide-inducible genes activator OxyR SW:OXYR_ERWCH FT (Q9X725) (305 aa) fasta scores: E(): 2.9e-15, 27.92% id in FT 308 aa, and to Pseudomonas aeruginosa probable FT transcriptional regulator PA0218 TR:Q9I6S0 (EMBL:AE004459) FT (306 aa) fasta scores: E(): 1.6e-29, 34.42% id in 305 aa" FT /db_xref="GOA:Q7VT41" FT /db_xref="HSSP:1IXC" FT /db_xref="InterPro:IPR005119" FT /db_xref="UniProtKB/TrEMBL:Q7VT41" FT /protein_id="CAE43972.1" FT /translation="MRAPDFSLRQLSYFLAAAECESVQQAAQALHVSAPAVSTAIAHLE FT ALLGVQLFRRRHARGLILTEQGSAFAVQCCGILQEAWGLGSLQGRGELHGQVRVGCLTT FT FAPFVIPPLLTRVQQHLPGVRLAWFEGHHEYLLEGLRTGTLDIAVLYDFEIPSGIKLVA FT LRAAPLQVVLPASHALAAKETLATSDLNTEPLILLDLPRTREYMLTAFSSNGAIPRIAH FT SVLSINMLLGMVAAGHGFSLLNFCPPNALPGMGGIVSRAFESHVRQPNIVAAYSFRYHY FT PRAAAAIVEHISELVDELVIQAH" FT misc_feature 95060..95485 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 95102..95194 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS complement(95969..97114) FT /transl_table=11 FT /locus_tag="BP3716" FT /product="putative exported protein" FT /note="Similar to Salmonella typhimurium FT Leu/Ile/Val/Thr-binding protein precursor LivJ FT SW:LIVJ_SALTY (P17215) (365 aa) fasta scores: E(): 6.8e-10, FT 24.49% id in 343 aa, and to Streptomyces coelicolor FT putative branched amino acid binding secreted protein FT SC8A11.13 TR:Q9FBZ7 (EMBL:AL391041) (396 aa) fasta scores: FT E(): 6.9e-25, 29.91% id in 361 aa" FT /db_xref="GOA:Q7VT40" FT /db_xref="InterPro:IPR000709" FT /db_xref="UniProtKB/TrEMBL:Q7VT40" FT /protein_id="CAE43973.1" FT /translation="MKLWKIMAVAALAAGPAHVALGQDIKIGALLETSGAIASLGQPTL FT EGAQLAIDQANAAGGIQGRKIVLVNVNSESDNTKTVSGARRLLSQEKVSAVIGPVSSGS FT NFAVADVIERAKVPMIANGASRGIVLPPEKRRYTFIAPLTDEIVQTVMLRDMQARHITK FT VAMLHSDVAFGTNGRDTLNRLAAQYGVQVVATETFGHADTDMTPQLTKLRGSPAQAIVI FT WATGPGLAIATRNHRALAIDTPLYLTHAANDFNYLRLAGEAANDILLPSSKLYVAGSLP FT SDDAQKAGLQSFVAAYTKKYGKPPATFSGNGYDSANLLLQAMRAAGSDPAALRAQLEKG FT ERYVGVTAIYAYGPEDHFGAKAESVRMLTVSNGAFELAAAP" FT misc_feature complement(97049..97114) FT /note="Signal peptide predicted for BP3716 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.797 between residues 22 and 23" FT CDS complement(97111..98334) FT /transl_table=11 FT /locus_tag="BP3717" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli hypothetical protein FT YlbE SW:YLBE_ECOLI (P77129) (419 aa) fasta scores: E(): FT 2.8e-27, 32.27% id in 409 aa, and to Streptomyces FT coelicolor hypothetical protein SC3F9.09 TR:O69949 FT (EMBL:AL023862) (363 aa) fasta scores: E(): 0.11, 29.28% id FT in 379 aa" FT /db_xref="InterPro:IPR009499" FT /db_xref="UniProtKB/TrEMBL:Q7VT39" FT /protein_id="CAE43974.1" FT /translation="MNSPDTLDPRDAAAWRAVTAVRPVLAGLLPAREAFAYPQRTLLHA FT GPPLPGDGEIPWPMLNSIVNAALYEGWAVDRADALYGVRTGAIRLAPAQDHRCVVPLAA FT ILSPSQHVQVVRDAAGRAAPCHAALNGGNRWPIRLGRPETEVAEHLRWLNGPFAEQLRA FT GCEAGIDLVELADQALAAGDDCHGRTLAGTQALAASLRALGHAPEDGAVADYLAQSPGF FT FLNLWMAASKCMLSAAEGMAGSSLVTAMGGNGREAGIQLAALPGRWFSRRCGAPRGALE FT PGLSGAQPLPAIGDSAVVEALGLGAMAMAHSPAQQQALGAYMPEPAAALGAALLGPAHP FT AFERSHPRMGLAARAVAATGKAPVVALGMLDSLGTAGRIGGGIWTADPGLFAHALEFMA FT QHQQGESR" FT CDS complement(98331..99929) FT /transl_table=11 FT /locus_tag="BP3718" FT /product="branched-chain amino acid transport ATP-binding FT protein" FT /note="N-terminal region is similar to Pseudomonas FT aeruginosa high-affinity branched-chain amino acid FT transport ATP-binding protein BraF SW:BRAF_PSEAE (P21629) FT (255 aa) fasta scores: E(): 7.3e-23, 38.15% id in 249 aa. FT Full length CDS is similar to Agrobacterium tumefaciens FT hypothetical protein AGR_pTi_138p TR:AAK91029 FT (EMBL:AE007933) (528 aa) fasta scores: E(): 1.6e-23, 29.79% FT id in 527 aa. CDS appears to contain two similar domains, FT N-terminal half of the protein is similar to the C-terminal FT half" FT /db_xref="GOA:Q7VT38" FT /db_xref="HSSP:1JI0" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VT38" FT /protein_id="CAE43975.1" FT /translation="MNSSAIMLDVQRVGIRFGGLQALDDVSFQVRRGEILALIGPNGAG FT KSTLLNIVSGALAPGQGKVCFENEDVTGLPAHEVNVRGLARTFQAAEILTALTVRENVM FT AAGVRRSGSGFLAGLAGLGWKTGTAQTLSEQAMMHLKTVGMAALADTSAAQLTAGQQRL FT LAAARALASGARLLYLDEPGAGLNSVEKDMLAGAIEQIRANGATVVFVEHNLAFVGRLA FT DRIVVLNHGRILAQGEAAAVRADPAVIAAYLGNTEIRPGLRPEAANAEAATVLEIDRLS FT VRYGALQALSDVSLQVRQGEIVSLIGANGAGKSTLLKAVAGLLRPQAGRIAFRGADLAS FT VPAEARTGAGIALAPEGRSLFPSLTVRENLMMGHYACVRRGGVMQLLAPRRETVAAMNQ FT VMEEITALFPRLAERMHQQAGTLSGGEGQMLAIGRALMSRPQLLMLDEPSFGLAPQIAR FT EILESLPRLTERGLTVLLIEQNARAALQVSDRGYVLVNGRLVAQDTSASLLARSDIGEA FT FLGWEGADTPTRRQA" FT misc_feature complement(98439..99032) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(98988..99011) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(99237..99833) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(99789..99812) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(99926..100888) FT /transl_table=11 FT /locus_tag="BP3719" FT /product="branched-chain amino acid transport system FT permease" FT /note="Similar to the C-terminal region of Escherichia coli FT high-affinity branched-chain amino acid transport system FT permease protein LivM SW:LIVM_ECOLI (P22729) (425 aa) fasta FT scores: E(): 8.4e-09, 29.73% id in 333 aa, and to the full FT length Streptomyces coelicolor putative branched amino acid FT transport system permease SC8A11.12 TR:Q9FBZ8 FT (EMBL:AL391041) (349 aa) fasta scores: E(): 7.1e-26, 32.09% FT id in 324 aa" FT /db_xref="GOA:Q7VT37" FT /db_xref="InterPro:IPR001851" FT /db_xref="UniProtKB/TrEMBL:Q7VT37" FT /protein_id="CAE43976.1" FT /translation="MKKLPLVLTLALLAAVYSTGNAYLINLFVVCAIYALPAIGLSLLV FT GHCGQISLGHAAFVGIGAYAAAIASQRWDMDPWLAVLFAAALACAAAWAVGKLVFRLRG FT HHLAMATLALGMIVHTVLVEWHDVTGGPDGISVAGVLKVGSLELASDPAFFVLGWLAVI FT VALILADNLIRSPFGLALRVVGESELVAGSIGIAPARVKQLIMMASGALAGLSGGLYTF FT WTGYISPDPFNVALSIKLLLIVALSGFTGTWRTLVGVFFVVLVSEGMKSFGHLDVILYG FT LLLILTMLFPVQRLGNALRHLLARRANRAKAPVIKANVL" FT misc_feature complement(99992..100831) FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component" FT misc_feature complement(join(100010..100075,100097..100162, FT 100208..100273,100385..100450,100511..100567, FT 100589..100654,100685..100735,100757..100822)) FT /note="8 probable transmembrane helices predicted for FT BP3719 by TMHMM2.0 at aa 22-44, 51-68, 78-100, 107-126, FT 146-168, 205-227, 242-264 and 271-293" FT misc_feature complement(100829..100888) FT /note="Signal peptide predicted for BP3719 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.426 between residues 20 and 21" FT CDS complement(100885..101754) FT /transl_table=11 FT /locus_tag="BP3720" FT /product="branched-chain amino acid transport system FT permease" FT /note="Similar to Pseudomonas aeruginosa high-affinity FT branched-chain amino acid transport system permease protein FT BraD SW:BRAD_PSEAE (P21627) (307 aa) fasta scores: E(): FT 1.3e-18, 34.88% id in 301 aa, and to Streptomyces FT coelicolor putative branched amino acid transport system FT permease SC8A11.11 TR:Q9FBZ9 (EMBL:AL391041) (290 aa) fasta FT scores: E(): 4.4e-34, 40.78% id in 282 aa" FT /db_xref="GOA:Q7VT36" FT /db_xref="InterPro:IPR001851" FT /db_xref="UniProtKB/TrEMBL:Q7VT36" FT /protein_id="CAE43977.1" FT /translation="MTEFLQYLVSGLVVGCIYGLVAIGFTAVYNVTNIVNFAQGEVSML FT GALATASMLAAGVPLPLAVVACVLLVGALGVVLERFALRPVGNHAIRGIIITIGISVVL FT QGLAVVTWGTDAQSLPAFSGSTPISVYGVSMQPQAFWVLGTSVVLMAVLYVFLTRTYLG FT RSFRACAMNPQAAALMGIPSSVMRGLGFFLSGAVGAIAGIIIAPIALMQYDSGAALGIK FT GFVACIMGGFGNPVGAAAGGLLLGLLEAFSAGYISSGFKNAIAFVLLLAFLLVRPGGLF FT GEFDKVKR" FT misc_feature complement(100900..101745) FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component" FT misc_feature complement(join(100930..100995,101011..101076, FT 101122..101187,101281..101337,101419..101484, FT 101521..101586,101671..101736)) FT /note="7 probable transmembrane helices predicted for FT BP3720 by TMHMM2.0 at aa 7-29, 57-79, 91-113, 140-159, FT 190-212, 227-249 and 254-276" FT CDS complement(101754..102392) FT /transl_table=11 FT /locus_tag="BP3721" FT /product="hypothetical protein" FT /note="No significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VT35" FT /protein_id="CAE43978.1" FT /translation="MSSPVHPGKVAWTGDNPGIYLKEQDDGPWTGLATYFHINYSPYGM FT GRGVLLLEQPDIAATLPQACNVCITDNEPLARYLMKEFFARFNSFRVSAGTEAISYLPL FT TEARSAGDTRSRYQEILRSRDIEVVLTWDGLTEPYAVDMPPEKGPTGRHEMYSLFIDAT FT DASITLNGKPLRGRVTTRNFDGGKKSSAFLAFSESWMETPSDGTDKRTT" FT CDS complement(102451..103812) FT /transl_table=11 FT /locus_tag="BP3722" FT /product="iron-sulphur protein" FT /EC_number="1.14.12.-" FT /note="N-terminal region is similar to Pseudomonas FT pseudoalcaligenes phenoxybenzoate dioxygenase alpha subunit FT PobA SW:POBA_PSEPS (Q52185) (409 aa) fasta scores: E(): FT 6.4e-32, 36.9% id in 401 aa, and Pseudomonas putida FT phthalate 4,5-dioxygenase oxygenase subunit Pht3 FT SW:PHT3_PSEPU (Q05183) (439 aa) fasta scores: E(): 1.5e-24, FT 31.07% id in 399 aa" FT /db_xref="GOA:Q7VT34" FT /db_xref="InterPro:IPR017941" FT /db_xref="UniProtKB/TrEMBL:Q7VT34" FT /protein_id="CAE43979.1" FT /translation="MEKKIVLVKPYSAYERDKTPAENADLTRVEKGSPMGEYLRRFWQP FT VALSEELGELPTAVRMFGENLVLFRARNGKPGLLEKHCSHRGTSLEFGICEENGLRCCY FT HGWLFGVDGQILETPGDPPDSQLRFNVCHGAYPLHEYRGIIFGYFGPPADKPEFPVYDT FT YDIPGDRLVPYCITYPCNWLQVHENVMDPAHAVFLHTRISFTQFAEAWGELPEMDFVPT FT PTGMIYVTSRRWEDKVWVRSNDIVLPNLAQVGHIWEDGLTPKEFARVAITRWTTPIDDH FT TCRIIGWRHMHPDADPRGLADESLCGVETVDFFGQNGERPYADRQRMPGDYDAQISQRP FT IAVHAMENLTRCDRGVAMLRQLLRRESRKIANGEAPAISPLRANGATPTYAHDTVVSIP FT PADTDDAACVREIGKAITAIVVKGDHHEQADRPEQVRERIRAYAAEQASTATSE" FT misc_feature complement(103453..103632) FT /note="HMMPfam hit to PF00355, Rieske [2Fe-2S] domain" FT CDS complement(104053..104286) FT /transl_table=11 FT /locus_tag="BP3723" FT /product="hypothetical protein" FT /note="No significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VT33" FT /protein_id="CAE43980.1" FT /translation="MTKTARDSQPADPHAQSWPHRPVNARKGTDVMPMPEEAPQVAGMP FT RRGRAIAEPGDPGVITPEDDVLDTSHLSNPQR" FT CDS 104629..105597 FT /transl_table=11 FT /locus_tag="BP3724" FT /product="conserved hypothetical protein" FT /note="Similar to Agrobacterium tumefaciens conserved FT hypothetical protein AGR_L_1509p TR:AAK89332 FT (EMBL:AE008274) (315 aa) fasta scores: E(): 1.8e-71, 60.81% FT id in 319 aa, and to Rhizobium loti hypothetical protein FT MLL5836 TR:Q98AV6 (EMBL:AP003007) (319 aa) fasta scores: FT E(): 8.1e-71, 63.15% id in 304 aa" FT /db_xref="InterPro:IPR011213" FT /db_xref="UniProtKB/TrEMBL:Q7VT32" FT /protein_id="CAE43981.1" FT /translation="MAAPRLPYPIPIALTDALDRSVSAELVAVLVAVTQGEPRVLTTED FT ARALPAGPFELAHRSLQAGLRAWVETQTHHPLGYVEQLYTFADSDRSNEAGARVISVSY FT LGLTREAGATGVAQVGWQHWYRYFPWEDWRAGRLAIIADEIAPRLLAWAGAGADAAARA FT QRRQRVALTFGLDGAGWNEDMVLQRYELLFEAGLVPESRHPDASGLPVAGQSMRHDHRR FT ILATGIARLRAKIKYRPVVFELMPPEFTLLQLQMAVEALAGRGLHKQNFRRLIEQQELV FT EETGGMASGAAGRPAKLFRFRRDVLLERAIAGSKLPLARQF" FT CDS 105699..106604 FT /transl_table=11 FT /gene="nadC" FT /locus_tag="BP3725" FT /product="putative nicotinate-nucleotide pyrophosphorylase" FT /EC_number="2.4.2.19" FT /note="Similar to Mycobacterium tuberculosis FT nicotinate-nucleotide pyrophosphorylase [carboxylating] FT NadC SW:NADC_MYCTU (O06594) (285 aa) fasta scores: E(): FT 1.6e-36, 50.18% id in 267 aa, and to Rhizobium loti FT nicotinate-mononucleotide pyrophosphorylase MLL9102 FT TR:Q982F4 (EMBL:AP003015) (284 aa) fasta scores: E(): FT 2.4e-68, 71.11% id in 277 aa. Possible alternative FT translational start site" FT /db_xref="GOA:Q7VT31" FT /db_xref="HSSP:1O4U" FT /db_xref="InterPro:IPR002638" FT /db_xref="UniProtKB/TrEMBL:Q7VT31" FT /protein_id="CAE43982.1" FT /translation="MSINIGQAAPLAIDAAPTLRTAPAPLPQVMLEPLVRAALLEDLGR FT AGDITTDAIVPAQARAQTRLVARQAGVLAGLDLARLAFRLVDPEIEFHALLPDGAQLQP FT GAEIALIRGPARGMLTAERTALNFLCHLSGVASATASIVAAIGAGHTKVTCTRKTMPGL FT RAVQKYAVRVGGGSNHRYGLDDAVLIKDNHVAIAGGIDAAVQRARAAIGHMVKIEVEVD FT TLEQLRVALRLGVDVVLLDNMDLDTLREAVALVDGRAVTEASGRITPETAPAVAATGVD FT LMAIGWLTHSARVLDIGLDS" FT misc_feature 105828..106601 FT /note="HMMPfam hit to PF01729, Quinolinate phosphoribosyl FT transferase, C-terminal domain" FT repeat_region 106601..106632 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 106601..107653 FT CDS 106703..107653 FT /transl_table=11 FT /locus_tag="BP3726" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE43983.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 107084..107617 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(107622..107653) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(107650..108711) FT /transl_table=11 FT /locus_tag="BP3727" FT /product="putative glycosyl transferases" FT /note="Weakly similar to Rhizobium meliloti FT lipopolysaccharide core biosynthesis glycosyl transferase FT LpsD SW:LPSD_RHIME (Q9R9N0) (343 aa) fasta scores: E(): FT 0.0003, 23.14% id in 363 aa, and to Rhizobium meliloti FT putative glycosyltransferase protein SMB21242 TR:CAC49146 FT (EMBL:AL603644) (374 aa) fasta scores: E(): 3.9e-10, 27.92% FT id in 351 aa" FT /db_xref="GOA:Q7VT30" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7VT30" FT /protein_id="CAE43984.1" FT /translation="MRILQLNFEKGWRGGERQTLYCMRAFRKAGHDVELLCRAGGPLQA FT RAAEEGFVTHGRRNVPGQLGFLASAGASYDIIHAQTANTVTWAVLTKALHRRPVAFSRR FT TSFVVEPGEEWKTGFKWRRVDLFVAISEMAAGEPRRLGIEPVIIRSAVEPHVIDPVNVE FT RLAREFALQGKKVLATSAALIHDKDPLTLVRAVGELARQRQDFVFLHFGAGGDREAQAR FT AEAQALGLDGVYVFAGFRKGVEDFYSIMDVFVMSSLEEALGSSVLDAFLQRVPVVSTDA FT GGLKESLADGRGVLCAVGDHHALAAGMARCLDDAAFRADVTQRAYDYVRTEHDVTEMGR FT RYLARFEQLLARR" FT misc_feature complement(107728..108231) FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1" FT CDS complement(108708..110030) FT /transl_table=11 FT /gene="rkpK" FT /locus_tag="BP3728" FT /product="putative UDP-glucose 6-dehydrogenase" FT /EC_number="1.1.1.22" FT /note="Similar to Rhizobium meliloti udp-glucose FT 6-dehydrogenase RkpK SW:UDG_RHIME (O54068) (437 aa) fasta FT scores: E(): 1e-76, 48.19% id in 442 aa, and to FT Burkholderia pseudomallei putative UDP-glucose FT dehydrogenase Udg TR:Q9WWX8 (EMBL:AF159428) (466 aa) fasta FT scores: E(): 8.3e-108, 63.07% id in 455 aa" FT /db_xref="GOA:Q7VT29" FT /db_xref="InterPro:IPR017476" FT /db_xref="UniProtKB/TrEMBL:Q7VT29" FT /protein_id="CAE43985.1" FT /translation="MKITVVGTGYVGLVSGACLADMGNEVLCLDTDAAKVAMLREGHIP FT IYEPGLEDLVKRNVAGGRLQFTDDIAASVAFGDVQFIAVGTPPGEDGSADLQYVLAAAR FT SIARHMTARKVVVDKSTVPVGTADKVRAAMQEVLAERGVEVPFSVASNPEFLKEGAAIN FT DFMSPDRIIVGTDDEHTIDTMRRIYAPFQRTHERVMVMDVRSAELTKYAANAMLATRIS FT FMNEMANLAEALGADIEQVRRGIGADPRIGYHFLYPGIGYGGSCFPKDVQALMRSAGEH FT ALPMRVIEAAETANQAQKLRLAHKVVARYGADLQGRTFALWGLAFKPNTDDMREAPSLS FT TIADLTRRGARIRVYDPVAMPQAAKVLDDNPAVELVDDMYQALDGADGLLIATEWKVFR FT APDLTRVKQLLKAPLIIDGRNLYVPADMRAQGFDYQGIGRA" FT misc_feature complement(108759..110030) FT /note="HMMPfam hit to PF00984, UDP-glucose/GDP-mannose FT dehydrogenase family" FT misc_feature complement(109971..110030) FT /note="Signal peptide predicted for BP3728 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.916) with cleavage site FT probability 0.892 between residues 20 and 21" FT misc_feature complement(109977..110009) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(110142..111527) FT /transl_table=11 FT /locus_tag="BP3729" FT /product="putative membrane protein" FT /note="Similar to Streptomyces coelicolor methylenomycin A FT resistance protein Mmr SW:MMR_STRCO (P11545) (475 aa) fasta FT scores: E(): 1e-23, 28.69% id in 453 aa, and to Escherichia FT coli hypothetical transport protein YebQ SW:YEBQ_ECOLI FT (P76269) (457 aa) fasta scores: E(): 6.1e-68, 44.69% id in FT 443 aa" FT /db_xref="GOA:Q7VT28" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7VT28" FT /protein_id="CAE43986.1" FT /translation="MIGEDASAARCGSRNSPPDGLPTPRRYWAAATVLTGMSLAVLDAT FT IANVALPTIARDLNAAPSDAVWVINAYNVAVVVMLLPMSALAERVGFRRMFTFGLLLFT FT LSSLACVFAGQLWHLTLARVCQGVGAATLMCMFGGLVRNIYLLRMLGRGISINATTVAV FT MSVLGPTLGSLILSVASWRWIFAVNLPIGIVIMCGLRFLPEVPRNKMPLDWLSALLAML FT TLGIFISGVDLLGHDVLRGIGMIAVAVAIGWLLVRRASGQTAPLVPVDLLRIQAVAYAV FT AASACTFAAQMASYVALPFYFQQVLERPYLQIGLLMAAWPVGTAVVAPVAGRLSDRYAA FT STLSGAGAGIMALGMACLTLLPTTVSNPWIMAGMFLTGLGFGLFQTPNNRAMLSSAPRQ FT RSGAAGGVQATTRVFGQSFGTALVAIAFSVYPQHGPTLALALGTVCASLGVVVNVVRRR FT AEA" FT misc_feature complement(join(110163..110219,110235..110300, FT 110364..110420,110433..110498,110535..110600, FT 110631..110696,110760..110813,110829..110885, FT 110922..110987,111000..111065,111087..111143, FT 111174..111239,111267..111332,111363..111428)) FT /note="14 probable transmembrane helices predicted for FT BP3729 by TMHMM2.0 at aa 33-55, 65-87, 96-118, 128-147, FT 154-176, 180-202, 214-233, 238-256, 277-299, 309-331, FT 343-365, 369-388, 409-431 and 436-455" FT CDS complement(111524..112897) FT /transl_table=11 FT /gene="glmU" FT /locus_tag="BP3730" FT /product="UDP-N-acetylglucosamine synthesis bifunctional FT protein" FT /EC_number="2.7.7.23" FT /note="Similar to Escherichia coli bifunctional protein FT [includes: UDP-N-acetylglucosamine pyrophosphorylase; FT glucosamine-1-phosphate N-acyltransferase] GlmU FT SW:GLMU_ECOLI (P17114) (456 aa) fasta scores: E(): 8.5e-84, FT 54.38% id in 456 aa, and to Pseudomonas aeruginosa FT glucosamine-1-phosphate FT acetyltransferase/N-acetylglucosamine-1-phosphate FT uridyltransferase PA5552 TR:Q9HT22 (EMBL:AE004967) (454 aa) FT fasta scores: E(): 4.4e-93, 59.34% id in 455 aa" FT /db_xref="GOA:Q7VT27" FT /db_xref="HSSP:1HV9" FT /db_xref="InterPro:IPR005882" FT /db_xref="UniProtKB/Swiss-Prot:Q7VT27" FT /protein_id="CAE43987.1" FT /translation="MLNVVILAAGLGKRMQSDLPKVLHTLAGRPMLDHVIGSARQLQPA FT RIIVVVGHGADRVKAAFEGQPGLQFALQQPQHGTGHAVQQAVPQLLEGDGEDDVTLVLY FT GDVPLVQPATLQNLLQARGRGVAVLTEVLADSTGYGRIVRDAQGQVCRIVEHKDASEAE FT RAIKEVNTGILAAPTARLKDWLGRITNDNAQGEYYLTDVIGLAVGDGVPVGAAQPGASW FT ETLGVNSRVQQAQLERAWQSELARRQLEAGVTLADPARFDVRGTLSCGRDVFIDVGCVF FT EGTVTLGDGVRVGPHCVLRDVAVQAGARIEAYSHLQQAKVGQEAVVGPYARLRPGADLG FT ERSHVGNFVEIKNSVLQADSKANHLAYIGDADIGARVNVGAGTITCNYDGVNKHRTVIE FT DDAFIGSDTQLVAPVRVGKGATLGAGTTLTKDAPAGQLTISRARQSTIEGWKRPVKKS" FT misc_feature complement(111608..111661) FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature complement(111662..111715) FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature complement(111833..111919) FT /note="ScanRegExp hit to PS00101, Hexapeptide-repeat FT containing-transferases signature." FT misc_feature complement(111839..111892) FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature complement(111893..111946) FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature complement(111995..112048) FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature complement(112196..112891) FT /note="HMMPfam hit to PF00483, Nucleotidyl transferase" FT CDS complement(112972..113685) FT /transl_table=11 FT /locus_tag="BP3731" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein rsc0305 rsc0305 or rs03272 SWALL:Q8Y2N0 FT (EMBL:AL646058) (294 aa) fasta scores: E(): 4e-07, 39.76% FT id in 259 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VT26" FT /protein_id="CAE43988.1" FT /translation="MSDSHTNPFVLPGMGQNSDLSGNPLLASMEMMRQAWAGLAGPGGL FT TQALPMAVPMNLEDLDRRINELRSVENWLRLNLSMLSSSIQGLEVQRATIATLRSFVDS FT VSSVGADEAAGGASPLEVALGLKPAPQGGGAPTGQAGGQAAAPAAEAGAVPPSINAAAQ FT SASQAWWDLMQQQFNNLAAATAASMQAPAGETPPPGAADAPPAAAGKPKAARKSAAKPR FT APRKRAPAKGAADKP" FT CDS complement(113901..114545) FT /transl_table=11 FT /locus_tag="BP3732" FT /product="putative exported protein" FT /note="C-terminus is weakly similar to the C-terminal FT region of Salmonella typhimurium outer membrane lipoprotein FT precursor SlyB SW:SLYB_SALTY (Q53549) (155 aa) fasta FT scores: E(): 0.00012, 40% id in 105 aa, and to the full FT length Escherichia coli hypothetical protein YcfJ FT SW:YCFJ_ECOLI (P37796) (179 aa) fasta scores: E(): 1.3e-05, FT 31.48% id in 162 aa" FT /db_xref="GOA:Q7VT25" FT /db_xref="InterPro:IPR008816" FT /db_xref="UniProtKB/TrEMBL:Q7VT25" FT /protein_id="CAE43989.1" FT /translation="MNRPSESAPRRRLHPLLGAAAVSVIILSAVAVAAMTGVLPNLSAG FT SSPQAAASAQEAALAGPEAANVASAPQQAPKQAQKPAQSAQPAQQPAQAGAPACATCGV FT VEGIRTVQVPVRDDSNHLIGTVAGGVVGGVVGNQFGGGHGRDALTVLGAVGGALAGREV FT ERNIREQQTVTHYELTVRMSDGSRRQFRSAQPFAFASGDRVRVENDQLLPG" FT misc_feature complement(114447..114545) FT /note="Signal peptide predicted for BP3732 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.752 between residues 33 and 34" FT CDS 114673..114894 FT /transl_table=11 FT /locus_tag="BP3733" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein Rsc3357 or Rs02632 SWALL:Q8XU37 (EMBL:AL646074) (75 FT aa) fasta scores: E(): 6.7e-14, 61.19% id in 67 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VT24" FT /protein_id="CAE43990.1" FT /translation="MDTPITLPELEQAINYWRHRAPSQGDESRLCAQAAALATPYALMI FT IGHRRDITPAELSQAARAAYQAWLDSRK" FT CDS complement(115066..115668) FT /transl_table=11 FT /locus_tag="BP3734" FT /product="SCO1/SenC family protein" FT /note="Similar to Caulobacter crescentus SCO1/2 family FT protein CC3503 TR:Q9A2Q3 (EMBL:AE006008) (190 aa) fasta FT scores: E(): 3.9e-28, 50% id in 170 aa, and to Rhizobium FT meliloti putative cytochrome c oxidase assembly factor FT transmembrane protein TR:CAC46733 (EMBL:AL591789) (199 aa) FT fasta scores: E(): 3e-20, 38.37% id in 172 aa" FT /db_xref="GOA:Q7VT23" FT /db_xref="InterPro:IPR012335" FT /db_xref="UniProtKB/TrEMBL:Q7VT23" FT /protein_id="CAE43991.1" FT /translation="MFAFTSARRRALQAVAAMGVAALLAACGESAPAFKGSDITGTQLG FT KKLALVDHNGKPRTLQDFAGKAVVVFFGFTQCPDVCPTSLAELSQVMKQLGPDADRVQV FT LLVTVDPERDTPEILKQYVTTFDPRFLGLTGTPEQIKQAAASFKAYYAKVPTQDGANYT FT MDHTAAFYLFDGKGESRVLATNTAGAEALAHDIKALL" FT misc_feature complement(115099..115620) FT /note="HMMPfam hit to PF02630, SCO1/SenC" FT misc_feature complement(115564..115668) FT /note="Signal peptide predicted for BP3734 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.724 between residues 35 and 36" FT CDS complement(115688..116581) FT /transl_table=11 FT /locus_tag="BP3735" FT /product="UbiA prenyltransferase family protein" FT /note="Similar to Xylella fastidiosa cytochrome c oxidase FT assembly factor XF1360 TR:Q9PDL9 (EMBL:AE003967) (303 aa) FT fasta scores: E(): 2.1e-54, 52.23% id in 291 aa, and to FT Pseudomonas aeruginosa probable cytochrome c oxidase FT assembly factor PA0113 TR:Q9I719 (EMBL:AE004449) (304 aa) FT fasta scores: E(): 2e-52, 50.87% id in 287 aa" FT /db_xref="GOA:Q7VT22" FT /db_xref="InterPro:IPR000537" FT /db_xref="UniProtKB/Swiss-Prot:Q7VT22" FT /protein_id="CAE43992.1" FT /translation="MSSLAAPQTGLLRQYLVLTKPRVTQLAVFCAVIGMFLAAPGMPDL FT SHVVFGTLGIWLLAAAAFAINCLIEQEVDARMLRTARRATARGTISDIQVLSLSGLLGG FT AGMLVLYHLVNPLTMWLTFATFVGYAIIYTVILKPRTPQNIVIGGLSGAMPPALGWAAV FT ADSVPAEAWVLVLIIFIWTPPHFWALALYRNNDYIKAGLPMLPVTRGQQFTRLHILLYS FT FALLATTLLPYAIRMSGALYLASALALGGMFVWYAWRLYREYSDALARRLFRFSILYLA FT LLFGALLIDHWVGLLR" FT misc_feature complement(join(115700..115765,115805..115861, FT 115877..115942,116006..116062,116093..116149, FT 116171..116230,116246..116311,116375..116440, FT 116453..116518)) FT /note="9 probable transmembrane helices predicted for FT BP3735 by TMHMM2.0 at aa 21-43, 47-69, 90-112, 117-137, FT 144-163, 173-192, 213-235, 240-259 and 272-294" FT misc_feature complement(115709..116512) FT /note="HMMPfam hit to PF01040, UbiA prenyltransferase FT family" FT CDS complement(116592..117623) FT /transl_table=11 FT /locus_tag="BP3736" FT /product="putative cytochrome oxidase assembly protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PA0112 TR:Q9I720 (EMBL:AE004449) (357 aa) fasta FT scores: E(): 5.1e-44, 44% id in 325 aa, and to Xylella FT fastidiosa hypothetical protein XF1359 TR:Q9PDM0 FT (EMBL:AE003967) (387 aa) fasta scores: E(): 2.6e-27, 33.77% FT id in 382 aa" FT /db_xref="GOA:Q7VT21" FT /db_xref="InterPro:IPR003780" FT /db_xref="UniProtKB/TrEMBL:Q7VT21" FT /protein_id="CAE43993.1" FT /translation="MDRIKQRYRKLVFFTWFLTLDLIMFGAFVRLTDSGLGCPDWPGCY FT GSVTPLGAMSDIHQAASSMPFGPVTLSKAWIEMIHRYVGAFLGMLIIAIVWMAWRYRRE FT LGRSPALAVGALIAVCVQGAFGAWTVTHKLMPVVVTAHLVFGLLVLSLMTWLSARERPH FT APLSPQTRRWRPWMTVGFLLLLAQITLGGWVSTNYAALACMDFPTCHGQLLPEMDFHGG FT FSLIRALGELPSGEMISQHALTAIHWTHRNFAFVVFAYVGVLAWRLRGEPGLRGPATLM FT LALLAAQLFTGLTTIFFQWPLLIAVLHNGGAAGLTLAAVVILVRLADAPQAAGVIRPQF FT DRV" FT misc_feature complement(116640..117614) FT /note="HMMPfam hit to PF02628, Cytochrome oxidase assembly FT protein" FT misc_feature complement(join(116646..116711,116724..116789, FT 116826..116891,117021..117086,117150..117215, FT 117231..117296,117336..117401,117531..117587)) FT /note="8 probable transmembrane helices predicted for FT BP3736 by TMHMM2.0 at aa 12-31, 74-96, 109-131, 136-158, FT 179-201, 244-266, 278-300 and 304-326" FT CDS complement(117626..118246) FT /transl_table=11 FT /locus_tag="BP3737" FT /product="putative exported protein" FT /note="Similar to Pseudomonas stutzeri hypothetical protein FT SW:YAPT_PSEST (P47206) (193 aa) fasta scores: E(): 0.061, FT 28.57% id in 182 aa, and to Pseudomonas aeruginosa FT hypothetical protein PA0111 TR:Q9I721 (EMBL:AE004449) (192 FT aa) fasta scores: E(): 3.2e-05, 27.88% id in 208 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VT20" FT /protein_id="CAE43994.1" FT /translation="MARSFAPSAPKRSMLPLVLVFLCALAPVLAAVIVYNNPQWWPEDS FT SNYGTLVQPQRPMPTAQQLQLTTLDGKPFDPAGLKGKWLLGVADQAACPESCARKLFIT FT RNSHASQGKNVDRVQRVWFITDDGEVPQKVLDAYRGTLMLRARPEQLGRYLLGQDAAAS FT AALFGPMWVIDPLGNLMLQFPPDADGVKVRKDISRLLYNSRIG" FT misc_feature complement(118157..118246) FT /note="Signal peptide predicted for BP3737 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.929 between residues 30 and 31" FT CDS complement(118272..119012) FT /transl_table=11 FT /locus_tag="BP3738" FT /product="putative membrane protein" FT /note="Similar to the C-terminal regions of Streptomyces FT coelicolor putative membrane protein SCI8.14 TR:Q9RJ39 FT (EMBL:AL132644) (290 aa) fasta scores: E(): 2.5e-06, 30.31% FT id in 254 aa, and Schizosaccharomyces pombe putative FT surf-family protein SPBC1215.01 TR:Q9Y810 (EMBL:AL096846) FT (290 aa) fasta scores: E(): 1.6e-05, 24.38% id in 242 aa. FT Possible alternative translational start sites" FT /db_xref="InterPro:IPR002994" FT /db_xref="UniProtKB/TrEMBL:Q7VT19" FT /protein_id="CAE43995.1" FT /translation="MAALLLLGIAAAILASLGRWQLHRADERRAVLAAIEGGRALAPLA FT LAPDTPAPQLTAWRAASAEGQWLPQFSVLLENRNHGGRPGYWLATPLRLHAGGAAVLVL FT RGWLPRALGAGQTLSVPAPPAGPQAVTGELMPRVPRLFELWSFGDARAGKLPDTLPASG FT ALPPVVQNLQLDDYARASGLTLLPTVLMQTGEHNDGLARDWPQPSVDYNQNIGYAMQWF FT AFAGIAAIAWLVVAARAWRRRRQA" FT misc_feature complement(118305..118361) FT /note="1 probable transmembrane helix predicted for BP3738 FT by TMHMM2.0 at aa 217-236" FT misc_feature complement(118959..119012) FT /note="Signal peptide predicted for BP3738 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.880) with cleavage site FT probability 0.452 between residues 18 and 19" FT CDS 119079..119279 FT /transl_table=11 FT /locus_tag="BP3739" FT /product="putative membrane protein" FT /note="Poor database matches. Similar to Pseudomonas FT aeruginosa hypothetical protein PA0109 TR:Q9I723 FT (EMBL:AE004449) (69 aa) fasta scores: E(): 0.0016, 35.48% FT id in 62 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VT18" FT /protein_id="CAE43996.1" FT /translation="MRVIVIVAFIGILASLASALVYLMKDKGSTNRTVNALTVRIGLSV FT ALFLFVLLAHHLGWIESTGLR" FT misc_feature join(119085..119144,119187..119255) FT /note="2 probable transmembrane helices predicted for FT BP3739 by TMHMM2.0 at aa 20-39 and 54-76" FT CDS complement(119389..120264) FT /transl_table=11 FT /gene="coIII" FT /locus_tag="BP3740" FT /product="putative cytochrome c oxidase, subunit III" FT /note="Similar to Pseudomonas aeruginosa cytochrome c FT oxidase, subunit III PA0108 TR:Q9I724 (EMBL:AE004449) (295 FT aa) fasta scores: E(): 1.4e-52, 50.34% id in 288 aa, and to FT Dinornis giganteus cytochrome c oxidase subunit III FT TR:Q9B6W4 (EMBL:AY016013) (261 aa) fasta scores: E(): FT 1.4e-27, 40.42% id in 282 aa" FT /db_xref="GOA:Q7VT17" FT /db_xref="InterPro:IPR013833" FT /db_xref="UniProtKB/TrEMBL:Q7VT17" FT /protein_id="CAE43997.1" FT /translation="MSASHSVQGKEAPYYYVPADSGHPVRTALALLAMGLGAAGWVNGA FT VWGKWVVLAGVIGLFLTLYFWFGDAIQESESGLYSKRIDASYRWGMSWFIFSEVMFFAG FT FFGALWYVRTITTPWLGDLDHKLLLWPDFNATWPNFGPAGVVEHFQTVGPFWLPTINTA FT LLLSSGVTLTIAHHALRENLRGKAIFWLFATVTLGFIFVACQAAEYIHAYADLNLKFNS FT GAYGSLFYMLTGFHGFHVIVGATMLTVILIRLIRGHFTADNHFGFEGAAWYWHFVDVVW FT LGLYLFVYWF" FT misc_feature complement(join(119395..119451,119512..119577, FT 119638..119703,119743..119808,119932..119997, FT 120061..120126)) FT /note="6 probable transmembrane helices predicted for FT BP3740 by TMHMM2.0 at aa 46-68, 89-111, 152-174, 187-209, FT 229-251 and 271-290" FT misc_feature complement(119395..120222) FT /note="HMMPfam hit to PF00510, Cytochrome c oxidase subunit FT III" FT CDS complement(120301..120525) FT /transl_table=11 FT /locus_tag="BP3741" FT /product="putative membrane protein" FT /note="No significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VT16" FT /protein_id="CAE43998.1" FT /translation="MTDDLHKLSQRKLSFFQTMKAVLWGFFGVRKGAGYQDDIARLNPV FT HVIVAGLLAAAIFVIALVAIVRWAVAGLA" FT misc_feature complement(join(120328..120393,120439..120486)) FT /note="2 probable transmembrane helices predicted for FT BP3741 by TMHMM2.0 at aa 13-29 and 44-66" FT CDS complement(120539..120661) FT /transl_table=11 FT /locus_tag="BP3742" FT /product="putative membrane protein" FT /note="Poor database matches. Similar to Rhizobium meliloti FT hypothetical transmembrane protein SMC00130 TR:CAC45479 FT (EMBL:AL591785) (46 aa) fasta scores: E(): 7.9, 44.82% id FT in 29 aa, and to Paracoccus denitrificans cox locus FT hypothetical protein 2 SW:YCO2_PARDE (P08302) (89 aa) fasta FT scores: E(): 8.7, 46.42% id in 28 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VT15" FT /protein_id="CAE43999.1" FT /translation="MTPEQRRRNRNVALILLALVAAVFVWTFIRGAVLFAGVTG" FT misc_feature complement(120560..120625) FT /note="1 probable transmembrane helix predicted for BP3742 FT by TMHMM2.0 at aa 12-34" FT CDS complement(120696..122303) FT /transl_table=11 FT /gene="ctaD" FT /gene_synonym="coxA" FT /locus_tag="BP3743" FT /product="cytochrome c oxidase polypeptide I" FT /EC_number="1.9.3.1" FT /note="Similar to Bradyrhizobium japonicum cytochrome c FT oxidase polypeptide I CtaD SW:COX1_BRAJA (P31833) (541 aa) FT fasta scores: E(): 2.9e-117, 55.69% id in 544 aa, and to FT Pseudomonas aeruginosa cytochrome c oxidase, subunit I FT PA0106 TR:Q9I726 (EMBL:AE004449) (530 aa) fasta scores: FT E(): 3.8e-148, 68.65% id in 536 aa" FT /db_xref="GOA:Q7VT14" FT /db_xref="HSSP:1AR1" FT /db_xref="InterPro:IPR014241" FT /db_xref="UniProtKB/TrEMBL:Q7VT14" FT /protein_id="CAE44000.1" FT /translation="MSSVTVDHVSPGHGHGHDDHHHAMPSGWRRWLFATNHKDIGTMYL FT IFSFFMLMEGGVLALLLRTELFEPGLQFFRPELFNQFTTMHGLIMVFGAVMPAFVGFAN FT WMIPLQIGASDMAFARMNNFSFWLLPVAGIMLTVSFFVPGGATAAGWTLYAPLSAQMGP FT GMDLAIFALHIMGASSIMGAINIIVTVLNMRAPGMTLMKMPLFCWTWLITAFLLIAVLP FT VLAAAITMVLTDRHFGAGFFNAAAGGDPVMYQHVFWFFGHPEVYIMILPAFGIVSAIVP FT AFARKQLFGYASMVYATAAIAILAFIVWAHHMFTTGMPVTGQLYFMYATMLISIPTGVK FT VFNWVATMWRGSMTFETPMLFSVGFIFVFTIGGFTGLILSVAPIDIQVHDTYYVVAHFH FT YVLVAGSLFALFAGTYYWLPKWTGRMYSEKLGKLHFWSSMISFNITFFPMHFLGLAGMP FT RRYADYAAQFTTFHQLATIGAFWFGLSQLIFLWAVLRCYRGKGEVASAKPWEGAEGLEW FT TVPSPAPFHTFETPPEVK" FT misc_feature complement(join(120822..120887,120933..120998, FT 121050..121115,121161..121226,121266..121331, FT 121377..121442,121464..121529,121608..121673, FT 121737..121802,121863..121928,121992..122057, FT 122118..122183)) FT /note="12 probable transmembrane helices predicted for FT BP3743 by TMHMM2.0 at aa 68-90, 110-132, 153-175, 195-217, FT 238-260, 286-308, 315-337, 352-374, 387-409, 424-446, FT 463-485 and 500-522" FT misc_feature complement(120858..122216) FT /note="HMMPfam hit to PF00115, Cytochrome C and Quinol FT oxidase polypeptide I" FT misc_feature complement(121368..121532) FT /note="ScanRegExp hit to PS00077, Heme-copper oxidase FT catalytic subunit, copper B binding region signature. FT Confirmed by InterPro eMOTIF pattern match." FT CDS complement(122414..123592) FT /transl_table=11 FT /locus_tag="BP3744" FT /product="putative bifunctional protein" FT /note="N-terminal region is similar to Paracoccus FT denitrificans cytochrome c oxidase polypeptide II precursor FT CtaC SW:COX2_PARDE (P08306) (298 aa) fasta scores: E(): FT 7.9e-29, 35.08% id in 285 aa. Similar to Pseudomonas FT aeruginosa cytochrome c oxidase, subunit II PA0105 FT TR:Q9I727 (EMBL:AE004449) (374 aa) fasta scores: E(): FT 6.2e-73, 53.16% id in 348 aa. C-terminal region contains FT cytochrome c domain" FT /db_xref="GOA:Q7VT13" FT /db_xref="HSSP:1C52" FT /db_xref="InterPro:IPR009056" FT /db_xref="UniProtKB/TrEMBL:Q7VT13" FT /protein_id="CAE44001.1" FT /translation="MPCFEVSMKKWRGILGACALLIGSAAAAQVQDMPGGPRVNQLNLH FT EGVTQISRDVVWLHWMMLAICIVIFIGVFGVMFYSIWAHRKSRGHKAATFHEHLGVEVA FT WTVIPFLIVIAMALPATKTVVAMKDTSSADVTVKVTGYQWKWGYEYLDGEAAGIKFLST FT LSTPRAQIENREPKGQFYLMEVDNHMVVPVDKKVRVVLTAGDVIHSWMVPDFGVKQDAI FT PGFLRDAWFRAEKPGIYRGQCAELCGKDHAFMPIVVEVLAQPEYDKWVADQKKKMAASA FT DDPNKEWTQAELVARGEKVFAANCVACHQANGKGIPGSFPPLDGDPVVLGPKAAQINTV FT LKGKPGTAMAAFGGQLNDVEVAAVITYTRNAWSNAGKGQDPVVQPKDVVEAR" FT misc_feature complement(122477..122722) FT /note="HMMPfam hit to PF00034, Cytochrome c" FT misc_feature complement(122663..122680) FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT misc_feature complement(122786..123487) FT /note="HMMPfam hit to PF00116, Cytochrome C oxidase subunit FT II, periplasmic domain" FT misc_feature complement(122831..122977) FT /note="ScanRegExp hit to PS00078, CO II and nitrous oxide FT reductase dinuclear copper centers signature. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature complement(join(123230..123295,123359..123424)) FT /note="3 probable transmembrane helices predicted for FT BP3744 by TMHMM2.0 at aa 13-30, 56-78 and 99-121" FT misc_feature complement(123509..123592) FT /note="Signal peptide predicted for BP3744 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.438 between residues 28 and 29" FT CDS 123840..124673 FT /transl_table=11 FT /locus_tag="BP3745" FT /product="conserved hypothetical protein" FT /note="Similar to the N-terminal region of FT Schizosaccharomyces pombe thiamine pyrophosphokinase TNR3 FT SW:TNR3_SCHPO (P41888) (569 aa) fasta scores: E(): 2.8e-05, FT 23.9% id in 251 aa, and to the full length Neisseria FT meningitidis hypothetical protein NMA0394 TR:Q9JWF6 FT (EMBL:AL162753) (291 aa) fasta scores: E(): 7.8e-16, 32.63% FT id in 239 aa" FT /db_xref="GOA:Q7VT12" FT /db_xref="HSSP:1Q27" FT /db_xref="InterPro:IPR000086" FT /db_xref="UniProtKB/TrEMBL:Q7VT12" FT /protein_id="CAE44002.1" FT /translation="MPDTHYASQQRLTRLYAELGQRAQALPPDQARPLYIAGHCCGWVT FT HAACDALRASGLADLQPDADGLRIGADLAPGPTLDALLAQVAQSLRDARCLRGWRDELL FT DVCAGDLRLGAIERAAVRPLGLNTRAVHLNAWTPQGELWIARRAMTKSTDPGMWDTLVG FT GLAGSGENLETALVRECGEEAGLDPHQLEQRTPLRTILHMHRRLPEGYQVEDLLTSTCV FT LPADARPANRDGEVMEIATTSVDHAVRRIEAGEFTLEAALVIVEDIMQRRAEGTT" FT misc_feature 124218..124634 FT /note="HMMPfam hit to PF00293, MutT-like domain" FT CDS complement(124777..127320) FT /transl_table=11 FT /locus_tag="BP3746" FT /product="putative sodium/hydrogen exchanger family" FT /note="N-terminus is similar to the N-terminal region of FT Oncorhynchus mykiss sodium-hydrogen exchange protein-beta FT SW:NAHB_ONCMY (Q01345) (759 aa) fasta scores: E(): 2.6e-22, FT 25.95% id in 447 aa, and to the full length Synechocystis FT sp. eukaryotic Na+/H+ exchanger SLR1727 TR:P73863 FT (EMBL:D90910) (527 aa) fasta scores: E(): 9e-32, 29.15% id FT in 511 aa. C-terminal region conatains a cyclic FT nucleotide-binding domain" FT /db_xref="GOA:Q7VT11" FT /db_xref="InterPro:IPR000985" FT /db_xref="UniProtKB/TrEMBL:Q7VT11" FT /protein_id="CAE44003.1" FT /translation="MDIGFLVFGLAGLLTLVCFMPPLAGRLKLPYSVLLALVGCLLGIG FT VHLHGWAPPVLGDLLDTIEHFEISSETFLMVFLPVLLFETALSMNVRRLIDDIGPILMM FT AIVAVVVCTLVVGFAVDAVSSYGLIVCLLLGAIVATTDPAAVVGIFREVGAPKRLTTLV FT EGESLFNDAASIALYSVLLAALGGSGELSVGAVFNDFIFHFVGGGLAGFLMGRLACALF FT AWLRGFPTAEITLTLTLAYLSFFISEHYLGVSGVVATVIAGLVVDSTGRTRMSPTTFEF FT LSSAWGQFGFWANSLIFLFAAMLIPKLMAEADWQELLLVLVVFAATLAARAIVVFGLLP FT LLRVARIGAEVSNPYKSVMWWGGLRGAVSLALALAVTEQSSVPEQARQFVAVATTGFVL FT MTLMINGVSLRPLIRMLGLNQLSPVERTIRNQVLAAALEDLQGRTEEIAKVDHVNPEAR FT DRIRAMFDASLTSVHDGQVGQMTLDQRVAVGLSIVARREEEMFFDILKAQIVDWRLAEG FT LLARAERLEDAVRAGGLAGFEAGIVADVRYWRLFRMALRTHYMFGFQGWLARELGKRFA FT SLLTKRSVARDLMKFAREQVAPLLGEEAADRIIAAHQRRLDLIENALQALTLQYPSYSL FT WLQESHLGRVARELERRRYRDMLEQFLISGEVYADLMAQLKARWQHIDKHPPLDIELGS FT AELVKRVPLFEGLSQDSLRAICRLLKPRLALPDQHILTEGRHGQEMCIVASGAVVVHLP FT DHTTIELGSGEFFGELALLGEEQLVPDVTSLGYSKLLMLSARDFHALLARDEHLHERIQ FT TVAKQRMRAIEVWKQYSQAAAAAAASTASEDSAPA" FT misc_feature complement(124903..125172) FT /note="HMMPfam hit to PF00027, Cyclic nucleotide-binding FT domain" FT misc_feature complement(126061..127302) FT /note="HMMPfam hit to PF00999, Sodium/hydrogen exchanger FT family" FT misc_feature complement(join(126097..126153,126193..126243, FT 126304..126369,126406..126462,126523..126588, FT 126649..126714,126760..126816,126880..126945, FT 126961..127026,127048..127104,127165..127230, FT 127252..127308)) FT /note="12 probable transmembrane helices predicted for FT BP3746 by TMHMM2.0 at aa 4-23, 30-52, 72-91, 98-120, FT 125-147, 168-187, 202-224, 244-266, 286-305, 317-339, FT 359-376 and 389-408" FT CDS 127498..128310 FT /transl_table=11 FT /locus_tag="BP3747" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PA4969 TR:Q9HUJ6 (EMBL:AE004910) (272 aa) fasta FT scores: E(): 2.8e-42, 48.82% id in 256 aa, and to Anabaena FT sp. 3',5'-cyclic-nucleotide phosphodiesterase ALR5338 FT TR:BAB77037 (EMBL:AP003599) (266 aa) fasta scores: E(): FT 4.2e-30, 37.75% id in 249 aa" FT /db_xref="GOA:Q7VT10" FT /db_xref="InterPro:IPR004843" FT /db_xref="UniProtKB/TrEMBL:Q7VT10" FT /protein_id="CAE44004.1" FT /translation="MSDSAAPVRADAPAVLVQLTDMHLFDEPHTAMLGVDTEASLQAVL FT RQVGEDGLNPDALLLTGDLSQDGSPASYQRLHALLAQTGLPVRCLPGNHDAPATLRAEL FT GAWSDPVLDLGAWRIVLLDSTVPGSNGGHLADDQLDLLSRAARLAGDRPLLVAVHHNPV FT QGDPDWHDTMMLDNAQLLFQRLQRLPQARVLLWGHVHQEFDCRRHNLRMLATPSTCFQF FT VVRDGKHCVDDAAPGYRWLKLYADGSLATGVRRLDGDRWRALLRQNAG" FT CDS complement(128704..129627) FT /transl_table=11 FT /gene="rpoH" FT /gene_synonym="htpR" FT /gene_synonym="hin" FT /gene_synonym="fam" FT /locus_tag="BP3748" FT /product="RNA polymerase sigma-32 factor" FT /note="Similar to Escherichia coli RNA polymerase sigma-32 FT factor RpoH SW:RP32_ECOLI (P00580) (284 aa) fasta scores: FT E(): 4.5e-51, 54% id in 287 aa, and to Alcaligenes FT xylosoxydans xylosoxydans RNA polymerase sigma factor RpoH FT TR:O82848 (EMBL:AB009990) (306 aa) fasta scores: E(): FT 1.1e-95, 86.46% id in 303 aa. Possible alternative FT translational start site" FT /db_xref="GOA:Q7VT09" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VT09" FT /protein_id="CAE44005.1" FT /translation="MPVDNLPLEAANMTQPSSSLALSGNALALAVANPGALGTIDAYIS FT AVNRLPILTAEQEGQLARRLRDEGDLEAARELVVSHLRLVVSVARQYLGYGLPHADLIQ FT EGNVGLMKAVKRFDPERGVRLVSFAVHWIKAEIHEFIIRNWRLVKVATTKAQRKLFFNL FT RSMRPDGQTLDPEQVDHIARELNVRREDVSEMEVRLSGRDLSLESQDDDDDSFAPIAYL FT SDEGRQEPSRVLDRMAHDDLQGAGLGRALEALDARSRRIIEARWLQDDGGLTLHELAQE FT FGVSAERVRQIEAAALKKMRGALTPA" FT misc_feature complement(128722..129417) FT /note="HMMPfam hit to PF00140, Sigma-70 factor" FT misc_feature complement(128728..128808) FT /note="ScanRegExp hit to PS00716, Sigma-70 factors family FT signature 2. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(129286..129327) FT /note="ScanRegExp hit to PS00715, Sigma-70 factors family FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(129735..130373) FT /transl_table=11 FT /locus_tag="BP3749" FT /product="putative membrane protein" FT /note="Poor database matches. Similar to Pseudomonas FT aeruginosa hypothetical protein PA1825 TR:Q9I2S0 FT (EMBL:AE004609) (214 aa) fasta scores: E(): 1.1e-07, 28.64% FT id in 199 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VT08" FT /protein_id="CAE44006.1" FT /translation="MLLPGLAMLFGRGGPRDEAGRRVFRLRPVRRLFGLLLLALAGVSG FT LLALSLVQFVRLTDDKPVAKVMVRQQGDGQFQLATRTPDQRMRDYTLYGDQWQIDAKVV FT RWRLPALLAGVPPLYRLERLSGRYQDTARERSAPRSVHALDDWPAPDLAQVKRLVPNWL FT PFVDVQFGSAAYMPMFDGARYQVYLDPRGALFIRPADAVTAERLKQLGW" FT misc_feature complement(130209..130274) FT /note="1 probable transmembrane helix predicted for BP3749 FT by TMHMM2.0 at aa 33-55" FT CDS complement(130484..131332) FT /transl_table=11 FT /locus_tag="BP3750" FT /product="putative esterase" FT /EC_number="3.1.1.1" FT /note="Similar to Homo sapiens esterase D ESD SW:ESTD_HUMAN FT (P10768) (282 aa) fasta scores: E(): 4.5e-60, 51.77% id in FT 282 aa, and to Pseudomonas aeruginosa probable esterase FT PA3628 TR:Q9HY02 (EMBL:AE004783) (283 aa) fasta scores: FT E(): 1.9e-60, 55.79% id in 276 aa" FT /db_xref="GOA:Q7VT07" FT /db_xref="InterPro:IPR014186" FT /db_xref="UniProtKB/TrEMBL:Q7VT07" FT /protein_id="CAE44007.1" FT /translation="MAVLELVSQHRCFDGWQRYYRHASKEIGLPMRFSVFVPPQAAHGP FT VPVLFYLAGLTCTEETFMIKAGAQRLAAQHGVMLVAPDTSPRGAGLPGEDEHWDFGVGA FT GFYLDATAEPWRSHYRMYSYVVDELHGIVTGELPGDAGRVGIFGHSMGGHGALVLALRN FT PDKFRSVSAFAPVVAPAQVPWGHKAFERYLGPDRQAWEAYDASALMRTLRQPYPEGILV FT DQGLADGFLVEQLRPELFEAACRHAGQPLTLRRHKGYDHGYYFISTFIEDHIRFHVERL FT G" FT misc_feature complement(130493..131119) FT /note="HMMPfam hit to PF00756, Putative esterase" FT CDS complement(131334..132440) FT /transl_table=11 FT /gene="adhI" FT /locus_tag="BP3751" FT /product="alcohol dehydrogenase class III" FT /EC_number="1.1.1.1" FT /note="Similar to Rhodobacter sphaeroides alcohol FT dehydrogenase class III AdhI SW:ADHI_RHOSH (P72324) (376 FT aa) fasta scores: E(): 3.6e-113, 75.79% id in 376 aa, and FT to Anabaena azollae glutathione dependent formaldehyde FT dehydrogenase GDFALDH TR:O24687 (EMBL:U89767) (369 aa) FT fasta scores: E(): 5.2e-112, 75.33% id in 369 aa" FT /db_xref="GOA:Q7VT06" FT /db_xref="HSSP:1CDO" FT /db_xref="InterPro:IPR014183" FT /db_xref="UniProtKB/TrEMBL:Q7VT06" FT /protein_id="CAE44008.1" FT /translation="MKTKAAIAWKAGAPLTVEDVDLEGPKAGEVLVEIKATGICHTDYY FT TLSGADPEGIFPAILGHEGAGVVMDVGPGVTTLKKGDHVIPLYTPECRQCKFCLSRKTN FT LCQAIRTTQGKGLMPDGTSRFSIDGKPLFHYMGTSTFANHIVVPEIALAKVRPDAPFDK FT ICYIGCGVTTGIGAVVFTAKVEAGANVVVFGLGGIGLNVIQGAKMVGADKIIGVDLNPA FT REAMARKFGMTHFVNPSEVENVVDHIIQMTDGGADYSFECIGNTKVMRQALECCHKGWG FT QSVIIGVAEAGAEISTRPFQLVTGREWKGSAFGGARGRTDVPKIVDWYMEGKINIDDLI FT THTLPLDRINEGFDLMKRGESIRSVVVY" FT misc_feature complement(131337..132401) FT /note="HMMPfam hit to PF00107, Zinc-binding dehydrogenases" FT misc_feature complement(132216..132260) FT /note="ScanRegExp hit to PS00059, Zinc-containing alcohol FT dehydrogenases signature. Confirmed by InterPro eMOTIF FT pattern match." FT CDS 132624..133388 FT /transl_table=11 FT /locus_tag="BP3752" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein Rsc2966 or Rs01331 SWALL:Q8XV65 (EMBL:AL646072) FT (241 aa) fasta scores: E(): 1.6e-25, 40.16% id in 249 aa, FT and to Rhizobium loti hypothetical protein MLL6832 FT TR:Q988A1 (EMBL:AP003010) (220 aa) fasta scores: E(): FT 7.7e-07, 30.3% id in 231 aa, and to Caulobacter crescentus FT hypothetical protein CC1445 TR:Q9A8A9 (EMBL:AE005819) (221 FT aa) fasta scores: E(): 0.00026, 25.53% id in 235 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VT05" FT /protein_id="CAE44009.1" FT /translation="MARLPRLYAPGLPQLVQANFVQPLVPPSQPAPQDILNQLGSWLGE FT SAQRHRVGVHAWVLANDRILLLATPADEEGLPRLMQTLGRNLAARLRGGRVFAGRYRSA FT LLEPGAWVLPSQVWLETYPVRSGAATEPDGWPWSSAGSHTGNTGAPPAQWQSDHADYWA FT CGNTPFDRQANYRRLLHDGLSREQTQRIEQAVSGQWALGSPAFIASLAHTASRRVAPGQ FT RGRPRKKPAPAAADTPDTPGTVHTPTTPNTSN" FT CDS 133733..138472 FT /transl_table=11 FT /gene="gltB" FT /gene_synonym="aspB" FT /locus_tag="BP3753" FT /product="glutamate synthase [NADPH] large chain precursor" FT /EC_number="1.4.1.13" FT /note="Similar to Escherichia coli glutamate synthase FT [NADPH] large chain precursor GltB SW:GLTB_ECOLI (P09831) FT (1517 aa) fasta scores: E(): 8.3e-106, 44.45% id in 1597 FT aa, and to Deinococcus radiodurans glutamate synthase, FT large subunit DR0183 TR:Q9RXX2 (EMBL:AE001880) (1615 aa) FT fasta scores: E(): 0, 70.42% id in 1579 aa" FT /db_xref="GOA:Q7VT04" FT /db_xref="HSSP:1EA0" FT /db_xref="InterPro:IPR006982" FT /db_xref="UniProtKB/TrEMBL:Q7VT04" FT /protein_id="CAE44010.1" FT /translation="MPYTKSSDSCRPVAATPIDASRIGLPAPQGLYHPHNEHDACGVGF FT VAHIKGRKSHSIIQQGLKILENLDHRGAVGADKLMGDGAGILIQIPDALYHDELAQQGI FT VLPPPGEYGVAMVFLPKETASRLACEQELERSVRAEGQIVLGWRDVPVDVEMPMSPAVR FT GLEPVIRQLFIGRGADVMVPDALERKLYVIRKTASHAIQNMRLAHSKEYFVPSASVRTV FT VYKGLLLADQVGRYYRDLADPRTVSALALVHQRFSTNTFPAWPLAHPYRMIAHNGEINT FT VKGNFNWLRAREGMMQSAVLGDDLKKLYPIVYEGQSDTATFDNCLELLVNSGYSLAHAM FT MMMIPEAWEQHTQMDESRRAFYEYHAAMMEPWDGPAAVAFTDGRQIGATLDRNGLRPAR FT YLITDDDMVIMASEAGTLSIPENRIVKKWRLQPGKMFLIDLEQGRIIDDGEIKLQLANS FT RPYRQWIERLQVKLESLPAPRTASPATQTAVPLLDRQQAFGWTQEDFKFILEPMAASGE FT EVIGSMGNDAPLAVLSNRSKPFYNYFRQLFAQVTNPPIDPIREQMVMSLVSFIGPKPNL FT LDINNVNPPLRLEVTQPVLDFAAMAQIRDIDQVTGKKFRSYELDITYPAAWGSEGIEAR FT VAALCARAVDAVQSGYNILIVSDRLVDADRVAIPALLATSAVHQHLIRAGLRTNAGLVV FT ETGSAREVHHFALLGGYGAEAIHPYLALESLGHLADPDKAIKNYIKAIGKGLNKVMSKM FT GISTYMSYCGAQIFEAVGLQRALVDKYFTGTASNIEGIGIFQVAEEALRMHHAAFGNDP FT VLANDLDAGGEYAFRIRGEEHIWTPDSIAKLQHASRSNNYRTYKEYAQIINDQSRRHMT FT LRGLFEFRFDPTRAIPLDDVEPAKEIVRRFATGAMSLGSISTEAHSVLAVAMNRIGGKS FT NTGEGGEDELRYRAEMRSGGSAIKDGDTLASVLGNDRVEADVALRAGDSLRSRIKQVAS FT GRFGVSAEYLSSADQIQIKMAQGAKPGEGGQLPGHKVSEYIAKLRYSVPGVGLISPPPH FT HDIYSIEDLAQLIHDLKNVNARASVSVKLVSEVGVGTVAAGVAKAKADHVVIAGHDGGT FT GASPVSSIKHAGTPWELGLAETQQTLVLNRLRSRIRVQADGQMKTGRDVIIGALLGADE FT FGFATAPLVVEGCIMMRKCHLNTCPVGVATQDPELRKKFQGKPEHVVNYFFFVAEEVRE FT IMAQLGIRRFDDLIGRTDLLDMRASVEHWKAQGLDFSRVFHRIVSDADVRQTEEQDHGL FT AGALDHQLIERSKPALERGEKVSFIVPVRNRNRTIGAMLSGAVAARYGHDGLPDDTIHI FT QCNGTAGQSFGAFLAHGITMDLVGEANDYVGKGLSGGRIVVRSPNDFRGFGPDHIIAGN FT TVLYGALSGEAFFNGVAGERFAVRNSGAATVVEGTGDHGCEYMTGGTVVVLGTTGRNFA FT AGMSGGVAYVWDPDRTFRERCNSAMVELEPVLPHAEQQSANEIESWHSAQRGGERSTDE FT TILRRLVEDHFRYTGSFRAREILGDWEASCGKFVKVMPTEYRRALGELWRAANPQQMAA FT " FT misc_feature 136229..137431 FT /note="HMMPfam hit to PF01645, Conserved region in FT glutamate synthase" FT misc_feature 137654..138244 FT /note="HMMPfam hit to PF01493, Domain of unknown function FT DUF14" FT CDS 138469..139947 FT /transl_table=11 FT /locus_tag="BP3754" FT /product="glutamate synthase [NADPH] small chain precursor" FT /note="Similar to Azospirillum brasilense glutamate FT synthase [NADPH] small chain gltD SW:GLTD_AZOBR (Q05756) FT (480 aa) fasta scores: E(): 2.1e-35, 38.58% id in 482 aa, FT and to the C-terminal region of Medicago sativa FT NADH-glutamate synthase, chloroplast precursor FT SW:GLSN_MEDSA (Q03460) (2194 aa) fasta scores: E(): FT 2.5e-84, 50.1% id in 493 aa" FT /db_xref="GOA:Q7VT03" FT /db_xref="InterPro:IPR017896" FT /db_xref="UniProtKB/TrEMBL:Q7VT03" FT /protein_id="CAE44011.1" FT /translation="MRISMGKITGFMEFQRLQEAAEAPQKRLKHWREFVLHLNDEQAKQ FT QAARCMDCGIPFCSNGCPVNNIIPDWNDLVYRQDWRRALDVLHSTNNFPEFTGRICPAP FT CEAACTLNINSDAVGIKSIEHAIIDKGWAEGWVTPQVPVRKTGKKVAVVGSGPAGLACS FT QQLARAGHSVTLFEKSDRIGGLLRYGIPDFKLEKSQIDRRIAQMEAEGVEFAPSTYIGN FT PDDAAADGLTVRTPQSLLADFDAVVMTGGSETPRDLPVPGRELSGVYYAMDFLRQQNKA FT VAGDRLSGQTLAKDKHVVVIGGGDTGSDCVGTSNRHGAASVTQFELLPQPPECEDKPMV FT WPYWPLKLRTSSSHDEGCERDWSVATKALAGSDGQVEKLVGVRVEWFKDEATGQMKMRE FT IEDSEFEIPADLVLLAMGFVSPVATVLDAFGVDRDARGNVRANTDDYRTNVDKVFAAGD FT MRRGQSLVVWAIREGRQCARSVDEYLMGASELPR" FT misc_feature 138916..139845 FT /note="HMMPfam hit to PF00070, Pyridine FT nucleotide-disulphide oxidoreductase" FT CDS 140239..140877 FT /transl_table=11 FT /locus_tag="BP3755" FT /product="putative outer membrane protein" FT /note="Similar to Vibrio cholerae outer membrane protein FT OmpW SW:OMPW_VIBCH (P17266) (217 aa) fasta scores: E(): FT 2.3e-18, 44.6% id in 213 aa, and to Escherichia coli outer FT membrane protein OmpW SW:OMPW_ECOLI (P21364) (212 aa) fasta FT scores: E(): 6.9e-32, 46.6% id in 206 aa" FT /db_xref="GOA:Q7VT02" FT /db_xref="InterPro:IPR005618" FT /db_xref="UniProtKB/TrEMBL:Q7VT02" FT /protein_id="CAE44012.1" FT /translation="MYTLYRQGRATLGAALLAAGLLAAPARAHEAGDWLLKVGASQVRP FT KSNNGSVLNGSVDLDANNSVRPSFTVTYMATRNIGIELLAAWPFEHDIRGSGLGRIAST FT KQLPPTLSVQWHFLPDSTVQPYVGVGLNYTTFFDTKTHGALEGSDLRLGDSWGLAGQLG FT VDVKLNERWFLNADLRYIDISSKVKLDGQRIGTARIDPWVATVAVGYRF" FT misc_feature 140239..140322 FT /note="Signal peptide predicted for BP3755 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.964 between residues 28 and 29" FT CDS 140959..141942 FT /transl_table=11 FT /locus_tag="BP3756" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT SMA1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: FT E(): 1.5e-48, 42.18% id in 320 aa, and to Pseudomonas FT chlororaphis hypothetical protein TR:Q9L3W5 (EMBL:AJ271325) FT (336 aa) fasta scores: E(): 3.1e-45, 42.94% id in 312 aa" FT /db_xref="GOA:Q7VT01" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VT01" FT /protein_id="CAE44013.1" FT /translation="MKSFRPLAAALLAAATLAAAGPARAQADSWPSKPITLIVPYAPSG FT FADTRVRLLARKLGESLQQSIVVENKAGAGGVIGTNLVAKAAPDGYTIGTGNLAPMAVN FT PTLMPAIPYDAQKDLAPVVLIENSPLVLSVHNTLPVKNLQDLIALARQEPGKLTFGSSG FT VGGAHHLSGEMFREQAGIDIVHVPYKGGSLAATDLMGGHITMMFEMGYSALPSIQSKKV FT HPIAVTSLKRLDVLPDVPTMAESGLPGFESYNWQGIVAPAGTPAPIIARLNAEFNKILK FT DPEVVKAIADTDSQAGGGTPEEFGAFIKSETEKWAKVIKAGNISLQ" FT misc_feature 140959..141033 FT /note="Signal peptide predicted for BP3756 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.838 between residues 25 and 26" FT CDS 142097..142933 FT /transl_table=11 FT /locus_tag="BP3757" FT /product="putative ABC transporter, ATP-binding protein" FT /note="Similar to Vibrio cholerae ABC transporter, FT ATP-binding protein VC2520 TR:Q9KP56 (EMBL:AE004321) (267 FT aa) fasta scores: E(): 4.6e-41, 51.16% id in 258 aa, and to FT Neisseria meningitidis ABC transporter, ATP-binding protein FT NMB1966 TR:Q9JXN0 (EMBL:AE002544) (266 aa) fasta scores: FT E(): 2.4e-40, 51.4% id in 249 aa" FT /db_xref="GOA:Q7VT00" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VT00" FT /protein_id="CAE44014.1" FT /translation="MPVHTRNSSELALSLEDVALGYGDFTVLDGISMQVHAGQVVAVMG FT GSGSGKTTLLRAATGQIVAQRGSVQAFGTDVGSVSQDGLQSLRKRMGVLFQQGALFTDL FT NVFENVAFPLREHTALDEAELTARVLDKLDAVGLRTAAHLRVAEISGGMARRVALARAV FT VLEPELILYDEPFAGLDPISMGITARLIRSLADRLGCATVLITHDVQESFAIADQVYLV FT GQGRLAAAGTPQQLAASQDPYVKQFLNGEPDGPVAFQYPETPAFRAWLAQQEGRKP" FT misc_feature 142208..142771 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 142229..142252 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 142541..142585 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 142930..143715 FT /transl_table=11 FT /locus_tag="BP3758" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas putida toluene tolerance FT protein Ttg2B TR:Q9Z401 (EMBL:AF106002) (265 aa) fasta FT scores: E(): 6.1e-45, 57.02% id in 242 aa, and to FT Pasteurella multocida hypothetical protein PM0175 TR:Q9CP79 FT (EMBL:AE006052) (261 aa) fasta scores: E(): 2.6e-48, 60.9% FT id in 243 aa" FT /db_xref="InterPro:IPR003453" FT /db_xref="UniProtKB/TrEMBL:Q7VSZ9" FT /protein_id="CAE44015.1" FT /translation="MSAHKALNGLGGWVRGQIGGIGYFTRFLGALLARSGIAVRRPGLV FT SQQVHFIGNYSLLIIAVSGLFVGFVLGLQGYYTLNRYGSEEALGLLVALSLVRELGPVV FT TALLFAGRAGTSLTAEIGLMKAGEQLSAMEVMAVDPMRRVLVPRFWGGIIAMPVLAAVF FT SMVGILGGWIVGVLMIGVDAGAFWSQMQNGVDVLDDVLNGVIKSLVFGVTVTLVALYEG FT WQARPTPEGVGRATTRTVVVGSLAVLGLDFILTALMFGN" FT misc_feature 142936..143706 FT /note="HMMPfam hit to PF02405, Domain of unknown function FT DUF140" FT misc_feature join(142987..143043,143080..143148,143191..143259, FT 143401..143469,143527..143586,143647..143706) FT /note="6 probable transmembrane helices predicted for FT BP3758 by TMHMM2.0 at aa 20-38, 51-73, 88-110, 158-180, FT 200-219 and 240-259" FT CDS 143728..144234 FT /transl_table=11 FT /locus_tag="BP3759" FT /product="mce related protein" FT /note="Similar to Pseudomonas putida toluene tolerance FT protein Ttg2C TR:Q9Z400 (EMBL:AF106002) (161 aa) fasta FT scores: E(): 4.7e-22, 46.54% id in 159 aa, and to Neisseria FT meningitidis putative outer membrane transport protein FT NMA0487 TR:Q9JR43 (EMBL:AL162753) (164 aa) fasta scores: FT E(): 3.3e-28, 53.04% id in 164 aa" FT /db_xref="InterPro:IPR003399" FT /db_xref="UniProtKB/TrEMBL:Q7VSZ8" FT /protein_id="CAE44016.1" FT /translation="MSREKTDFWVGLFVLLGAAALLFLALRAGNLSTFSFAPTYQLTAN FT FDNIGGLKVRAPVKSAGVVVGRVSRIAFDDKTFQAVVTFDLETAYRFPTDSSAAILTSG FT LLGEQYVGLAPGGEEEDFAEGGKIRYTQSAVVLEQLISQFLYGTAEKQGSSAAPETGAE FT PKPQQ" FT misc_feature 143728..143838 FT /note="Signal peptide predicted for BP3759 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.995) with cleavage site FT probability 0.459 between residues 37 and 38" FT misc_feature 143755..144180 FT /note="HMMPfam hit to PF02470, mce related protein" FT CDS 144334..145125 FT /transl_table=11 FT /locus_tag="BP3760" FT /product="putative lipoprotein" FT /note="Similar to Shigella flexneri lipoprotein required FT for intercellular spreading, VacJ SW:VACJ_SHIFL (P43262) FT (251 aa) fasta scores: E(): 2e-22, 35.77% id in 246 aa, and FT to Pseudomonas aeruginosa hypothetical protein PA2800 FT TR:Q9I043 (EMBL:AE004707) (234 aa) fasta scores: E(): FT 1.7e-27, 40.26% id in 231 aa" FT /db_xref="GOA:Q7VSZ7" FT /db_xref="InterPro:IPR007428" FT /db_xref="UniProtKB/TrEMBL:Q7VSZ7" FT /protein_id="CAE44017.1" FT /translation="MTKHSAARIATIAAAGVLLAGCAAPKNPDPRDPWEGFNRGVYKFN FT DTVDRALFKPVAQAYTFVTPQPVRSCVHNMFSNVGDLWSATNSFLQGRGHDFVNTIGRF FT LFNTTMGIGGCFDVASTTGARKIPNDFGVTLGVWGFGQGPYLVLPIWGASSLRDGVGLI FT GDWTGNQGATIGAIDNVPLRNSLWGLEAVDLRASLLDTTDTVDRVALDPYSFVRDAYLQ FT RRAAMVRGTKTGDDTLPTYEDEGDDDAAPAAPAAQPAAQPQ" FT misc_feature 144334..144378 FT /note="Signal peptide predicted for BP3761 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.997 between residues 26 and 27" FT misc_feature 144367..144399 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 145159..145782 FT /transl_table=11 FT /locus_tag="BP3761" FT /product="putative exported protein" FT /note="Similar to Neisseria meningitidis putative FT periplasmic transport protein NMA0488 TR:Q9JW92 FT (EMBL:AL162753) (196 aa) fasta scores: E(): 4.3e-16, 33.82% FT id in 204 aa, and to Escherichia coli hypothetical protein FT YrbC SW:YRBC_ECOLI (P45390) (211 aa) fasta scores: E(): FT 1.8e-12, 29.41% id in 204 aa" FT /db_xref="InterPro:IPR008869" FT /db_xref="UniProtKB/TrEMBL:Q7VSZ6" FT /protein_id="CAE44018.1" FT /translation="MRFSIVSLLHRLFLAGALALAAGAQAAPDPMGPPDKFVLDAATQT FT IDILKSDQNVKAGNLAHINQVVDAHILPFVNFQKTTRLAAGRYWRQATDTQKAELAKAF FT RGTLVRTYSGALTKVDNGTTIKLLPFRGDPNADDVVVRSLISQSNSQPVQVDYRLEKTP FT QGWRIYDMNVEGIWLIENYRNQFAQQINQNGIDGLIQALNQRNQ" FT misc_feature 145159..145236 FT /note="Signal peptide predicted for BP3761 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.997 between residues 26 and 27" FT CDS join(145848..146387,146390..146701) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3762" FT /product="probable ATP-binding ABC transporter protein FT (pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 180. The frameshift occurs within FT a polymeric tract of (C)8. Similar to the N-terminal FT regions of Burkholderia solanacearum probable ABC FT transporter, ATP-binding protein RSC2956 TR:CAD16663 FT (EMBL:AL646072) (321 aa) fasta scores: E(): 4.9e-54, 73.63% FT id in 220 aa, and Caulobacter crescentus ABC transporter, FT ATP-binding protein C0188 TR:Q9ABN8 (EMBL:AE005693) (334 FT aa) fasta scores: E(): 9.2e-37, 48.98% id in 247 aa." FT /db_xref="PSEUDO:CAE44019.1" FT misc_feature 146019..146453 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 146040..146063 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT variation 146384..146391 FT /note="(C)8 in pertussis; (C)6 in parapertussis and FT bronchiseptica" FT CDS 146698..147513 FT /transl_table=11 FT /locus_tag="BP3764" FT /product="putative ABC-2 type transporter protein" FT /note="Similar to Neisseria meningitidis capsule FT polysaccharide export inner-membrane protein CtrC FT SW:CTRC_NEIMB (P32015) (265 aa) fasta scores: E(): 7e-06, FT 27.23% id in 257 aa, and to Caulobacter crescentus ABC-2 FT type transporter CC2244 TR:Q9A651 (EMBL:AE005895) (273 aa) FT fasta scores: E(): 9.4e-38, 47.81% id in 274 aa" FT /db_xref="GOA:Q7VSZ5" FT /db_xref="InterPro:IPR013526" FT /db_xref="UniProtKB/TrEMBL:Q7VSZ5" FT /protein_id="CAE44020.1" FT /translation="MSQSDTSAASRPLVQPRLDAGSGFPTLLRKELLRFWKVSFQTIAA FT PVITALLYLLVFAHVLEGRLVVYGSVPYTAFLIPGLMMMSMLQNAFANPSSSLIQSRAT FT GNLVFMLLPPLSHREIFAAYVLAAVVRGMAVGLCVWIVALFFIPLPPQNLAWVLLFAML FT ACGIMGVLGLIAGLWSEKFDQLAAFQNFLIMPATFLSGVFYSIHTLPPFWQAVSHWNPI FT FYTIDGFRYGFFSVSDVSPWHSLAVVAGVFVVLSLYALRLLGSGYKLRN" FT misc_feature 146782..147501 FT /note="HMMPfam hit to PF01061, ABC-2 type transporter" FT misc_feature join(146809..146877,146890..146958,147067..147135, FT 147163..147231,147268..147336,147421..147489) FT /note="6 probable transmembrane helices predicted for FT BP3764 by TMHMM2.0 at aa 38-60, 65-87, 124-146, 156-178, FT 191-213 and 242-264" FT CDS 147513..147764 FT /transl_table=11 FT /locus_tag="BP3765" FT /product="BolA-like protein" FT /note="Similar to Escherichia coli putative general stress FT response and morphology regulator BolA SW:BOLA_ECOLI FT (P15298) (105 aa) fasta scores: E(): 0.00069, 38.46% id in FT 52 aa, and to Neisseria meningitidis hypothetical protein FT NMA0256 TR:Q9JWS9 (EMBL:AL162752) (82 aa) fasta scores: FT E(): 3.3e-10, 52.63% id in 76 aa" FT /db_xref="HSSP:1V9J" FT /db_xref="InterPro:IPR002634" FT /db_xref="UniProtKB/TrEMBL:Q7VSZ4" FT /protein_id="CAE44021.1" FT /translation="MSMLPTPEQVRQYIADGLPCEHLDVQGDGSHFDAVIVSAAFEGKR FT LIARHQLVYAALGDRMKAEIHALSMRTLTPAEYAKAGS" FT misc_feature 147525..147746 FT /note="HMMPfam hit to PF01722, BolA-like protein" FT CDS 147764..149032 FT /transl_table=11 FT /gene="murA" FT /gene_synonym="murZ" FT /locus_tag="BP3766" FT /product="UDP-N-acetylglucosamine FT 1-carboxyvinyltransferase" FT /EC_number="2.5.1.7" FT /note="Similar to Enterobacter cloacae FT UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA FT SW:MURA_ENTCL (P33038) (419 aa) fasta scores: E(): 1e-88, FT 60.33% id in 421 aa, and to Neisseria meningitidis FT UDP-N-acetylglucosamine 1-carboxyvinyltransferase NMA0258 FT TR:Q9JWS7 (EMBL:AL162752) (417 aa) fasta scores: E(): FT 3.8e-94, 64.35% id in 418 aa" FT /db_xref="GOA:Q7VSZ3" FT /db_xref="HSSP:1EJD" FT /db_xref="InterPro:IPR005750" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSZ3" FT /protein_id="CAE44022.1" FT /translation="MDKLRITGGSPLRGEVTVSGAKNAALPILCASLLTAEPLVLGNVP FT QLNDTSTTLRLLGRMGVRAERAGDGTVTLQADQVDNLEAPYELVKTMRASILVLGPLLA FT RFGQARVSLPGGCAIGQRPVDQHIKGLAALGAEIEIEHGFVVARATRLKGASIRTDMVT FT VTGTENLLMAAVLAEGQTVLENAAREPEVVDLAELLIKMGARIQGHGTDRIVVDGVARL FT HGARHDVIADRIEAGTFLCAVGAAGGDITLRGAAPDTMGATLDKLVEAGLTIETGPDWI FT RGAMHGRPRAVGARTHEYPGFATDMQAQLMALDTVADGTAVIVENIFENRYMHVQELCR FT LGADIDIDGHTAVVRGVARLSGATVMATDLRASASLVIAGLAAEGETLVDRIYHLDRGY FT DRMEVKLRALGASIQRVTGKETA" FT misc_feature 147779..148981 FT /note="HMMPfam hit to PF00275, EPSP synthase FT (3-phosphoshikimate 1-carboxyvinyltransferase)" FT CDS 149029..149700 FT /transl_table=11 FT /gene="hisG" FT /locus_tag="BP3767" FT /product="putative ATP phosphoribosyltransferase" FT /EC_number="2.4.2.17" FT /note="Similar to the N-terminal region Escherichia coli FT ATP phosphoribosyltransferase HisG SW:HIS1_ECOLI (P10366) FT (299 aa) fasta scores: E(): 6.4e-14, 34.43% id in 212 aa, FT and to the full length Neisseria meningitidis ATP FT phosphoribosyltransferase HisG TR:Q9JQS2 (EMBL:AL162757) FT (217 aa) fasta scores: E(): 3.3e-52, 70.67% id in 208 aa" FT /db_xref="GOA:Q7VSZ2" FT /db_xref="InterPro:IPR018198" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSZ2" FT /protein_id="CAE44023.1" FT /translation="MNPAAAPLTLALSKGRIFEETMPLLAEAGIEVPENPESSRKLILP FT TSDPGLRLIIVRASDVPTYVQYGAADLGIAGKDVLIEHAAQQSGRLYQPIDLNIAKCRL FT CVAVRQDFDYQAAVHQGARLRVATKYVQSAREHFAAKGVHVDIIKLYGSMELAPLVGLA FT DAIVDLVSTGGTLRANGLAAVEDVMPISSRLIVNQAALKTRGARLQPLIDAFRRASERI FT A" FT misc_feature 149194..149685 FT /note="HMMPfam hit to PF01634, ATP FT phosphoribosyltransferase" FT misc_feature 149491..149556 FT /note="ScanRegExp hit to PS01316, ATP FT phosphoribosyltransferase signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 149751..151055 FT /transl_table=11 FT /gene="hisD" FT /locus_tag="BP3768" FT /product="putative histidinol dehydrogenase" FT /EC_number="1.1.1.23" FT /note="Similar to Escherichia coli histidinol dehydrogenase FT HisD SW:HISX_ECOLI (P06988) (433 aa) fasta scores: E(): FT 4.4e-48, 41.76% id in 419 aa, and to Neisseria meningitidis FT histidinol dehydrogenase NMB1581 TR:Q9JYH8 (EMBL:AE002508) FT (429 aa) fasta scores: E(): 1e-104, 65.65% id in 428 aa" FT /db_xref="GOA:Q7VSZ1" FT /db_xref="InterPro:IPR012131" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSZ1" FT /protein_id="CAE44024.1" FT /translation="MALINRLDSRDPGFKTALSQLLAFEAEQDESIDQAAAGILADVRR FT RGDAALLEYTQRFDRLAVDDATALEIPQADWHAALDSLPAAQRQALEAAAARVRAYHER FT QRGETWTYTEADGTMLGQQITALDRVGLYVPGGKAAYPSSVLMNAIPAKVAGVPELIMV FT TPTPDGVRNPIVLAAAAIAGVDRAFAIGGAQAVGALAYGTATVPAVDKIVGPGNAYVAA FT AKRRVFGTVGIDMIAGPSEILVICDGKTPADWIAMDLFSQAEHDELAQSILLCPDAAFL FT AEVEAAIERLLPGMPRADILRVSLANRGALILVRDLEEACAIANDIAPEHLEISTEQPQ FT RWTALIRHAGAIFMGRYSSEALGDYCAGPNHVLPTSRTARFSSPLGVYDFQKRSSLIQV FT SREGAQTLGRIAAELALGEGLQAHAASAQYRLDQP" FT misc_feature 149802..151046 FT /note="HMMPfam hit to PF00815, Histidinol dehydrogenase" FT CDS 151052..152149 FT /transl_table=11 FT /gene="hisC" FT /locus_tag="BP3769" FT /product="putative histidinol-phosphate aminotransferase" FT /EC_number="2.6.1.9" FT /note="Similar to Escherichia coli histidinol-phosphate FT aminotransferase HisC SW:HIS8_ECOLI (P06986) (356 aa) fasta FT scores: E(): 2.3e-20, 31.4% id in 363 aa, and to Neisseria FT meningitidis histidinol-phosphate aminotransferase NMA1771 FT TR:Q9JTH8 (EMBL:AL162757) (365 aa) fasta scores: E(): FT 3.7e-48, 40.84% id in 355 aa" FT /db_xref="GOA:Q7VSZ0" FT /db_xref="InterPro:IPR015421" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSZ0" FT /protein_id="CAE44025.1" FT /translation="MTGVAAPERIARAVRADIRALTAYPVADAAGCIKLDAMECPYELP FT AEVRDDIARAARETPLNRYPAAANPALQAQVRQAFEVPAQAGLLFGNGSDELIHLIIQA FT CCEPGDTVLSPWPSFVYFDMAARLSHARFVGVPLTAGLELDLPATLAAIEAHQPKVVFL FT ALPNNPTGDLWPDAAVRAILDAAPGLVVLDEAYQPFAGHTWMPRIMDEPNAVVMRTVSK FT IGLAGLRFGYLAGHPAWIAEFDKVRPPYNMDVLSQAVLAAVLRHKPVLDAQADRLRADR FT QPLADGLAALPGVTVFPSAGNFVLARFCGKLDGNAVHLAPKTRKILVRNFSNAHPLLAD FT CLRISVGTPTENAAVLSALQDILSA" FT misc_feature 151301..152080 FT /note="HMMPfam hit to PF00222," FT CDS 152142..152738 FT /transl_table=11 FT /gene="hisB" FT /locus_tag="BP3770" FT /product="imidazoleglycerol-phosphate dehydratase" FT /EC_number="4.2.1.19" FT /note="Similar to C-terminal region of Escherichia coli FT histidine biosynthesis bifunctional protein hisB [includes: FT histidinol-phosphatase and imidazoleglycerolphosphate FT dehydratase] HisB SW:HIS7_ECOLI (P06987) (355 aa) fasta FT scores: E(): 3.6e-32, 50% id in 194 aa, and to the full FT length Pseudomonas aeruginosa imidazoleglycerol-phosphate FT dehydratase PA5143 TR:Q9HU41 (EMBL:AE004927) (197 aa) fasta FT scores: E(): 1.7e-56, 74.74% id in 194 aa" FT /db_xref="GOA:Q7VSY9" FT /db_xref="InterPro:IPR000807" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSY9" FT /protein_id="CAE44026.1" FT /translation="MLNMRTAEITRNTNETRIRVAVNLDGTGKQTIDTGVPFLDHMLDQ FT IARHGLIDLDIKADGDLHIDAHHTVEDVGITLGMAIAKAVGSKAGLRRYGHAYVPLDEA FT LSRVVIDFSGRPGLEYHIDFTRARIGDFDVDLTREFFQGLVNHALMTLHIDNLRGFNAH FT HQCETVFKAFGRALRMALEVDPRMGDAVPSTKGVL" FT misc_feature 152241..152675 FT /note="HMMPfam hit to PF00475, Imidazoleglycerol-phosphate FT dehydratase" FT misc_feature 152331..152372 FT /note="ScanRegExp hit to PS00954, FT Imidazoleglycerol-phosphate dehydratase signature 1. FT Confirmed by InterPro eMOTIF pattern match." FT misc_feature 152616..152654 FT /note="ScanRegExp hit to PS00955, FT Imidazoleglycerol-phosphate dehydratase signature 2. FT Confirmed by InterPro eMOTIF pattern match." FT CDS 152770..153447 FT /transl_table=11 FT /gene="hisH" FT /locus_tag="BP3771" FT /product="amidotransferase" FT /EC_number="2.4.2.-" FT /note="Similar to Escherichia coli amidotransferase HisH FT SW:HIS5_ECOLI (P10375) (196 aa) fasta scores: E(): 4.7e-11, FT 35% id in 220 aa, and to Neisseria meningitidis FT amidotransferase NMA0840 SW:HIS5_NEIMA (Q9JVH3) (212 aa) FT fasta scores: E(): 5.2e-17, 49.77% id in 223 aa" FT /db_xref="GOA:Q7VSY8" FT /db_xref="InterPro:IPR017926" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSY8" FT /protein_id="CAE44027.1" FT /translation="MSTIAIVDYGMGNFHSVARALQHAAPDADIRICNRPEQIDAADRV FT VFPGQGAMPDCMRTLNESGLRAAVERAAASKPLMGVCVGEQMLFERSEEGGTPCLGIFP FT GEVRRFAGPQFADPVAADQAAAAPPAAARERLKVPHMGWNQVRQTRSHALWEGIPDGTH FT FYFVHSYYAAPSDPALTTGVTDYGVAFTCAVAAANIFAVQFHPEKSAEHGLRLYRNFVD FT WQP" FT misc_feature 152782..153438 FT /note="HMMPfam hit to PF00117, Glutamine amidotransferase FT class-I" FT misc_feature 152998..153033 FT /note="ScanRegExp hit to PS00442, Glutamine FT amidotransferases class-I active site. Confirmed by FT InterPro eMOTIF pattern match." FT CDS 153511..154251 FT /transl_table=11 FT /gene="hisA" FT /locus_tag="BP3772" FT /product="histidine biosynthesis protein" FT /EC_number="5.3.1.16" FT /note="Similar to Escherichia coli FT phosphoribosylformimino-5-aminoimidazole carboxamide FT ribotide isomerase HisA SW:HIS4_ECOLI (P10371) (245 aa) FT fasta scores: E(): 6.9e-21, 33.87% id in 245 aa, and to FT Neisseria meningitidis putative FT phosphoribosylformimino-5-aminoimidazole carboxamide FT ribotide isomerase NMA0839 TR:Q9JVH4 (EMBL:AL162754) (245 FT aa) fasta scores: E(): 1.3e-62, 69.26% id in 244 aa" FT /db_xref="GOA:Q7VSY7" FT /db_xref="InterPro:IPR006062" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSY7" FT /protein_id="CAE44028.1" FT /translation="MLLIPAIDLKDGRCVRLRQGDLDDATVFSEDPAAMASHWLDLGAR FT RLHLVDLNGAVAGKPKNEAPIKAILQAVGDDIPVQIGGGIRDLDTIERYLDAGISYVII FT GTAAVKNPGFLQDACGAFPGQIIVGLDARDGKVATDGWSKLTRHDVLDLAKKFEDYGCE FT AIIYTDIGRDGMLSGVNVDATVRLAQHVRIPVFASGGIAGLSDIEALCAVEDDGVEGAI FT LGRSIYEGALDFQAAQARADELAK" FT misc_feature 153511..154215 FT /note="HMMPfam hit to PF00977, Histidine biosynthesis FT protein" FT CDS 154248..155057 FT /transl_table=11 FT /gene="hisF" FT /locus_tag="BP3773" FT /product="histidine biosynthesis protein" FT /EC_number="4.1.3.-" FT /note="Similar to Escherichia coli imidazole glycerol FT phosphate synthase subunit in heterodimer with HisH, HisF FT SW:HIS6_ECOLI (P10373) (258 aa) fasta scores: E(): 5.1e-35, FT 42.47% id in 259 aa, and to Pseudomonas aeruginosa FT imidazoleglycerol-phosphate synthase, cyclase subunit FT PA5140 TR:Q9HU44 (EMBL:AE004927) (256 aa) fasta scores: FT E(): 5.1e-68, 72.83% id in 254 aa" FT /db_xref="GOA:Q7VSY6" FT /db_xref="InterPro:IPR004651" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSY6" FT /protein_id="CAE44029.1" FT /translation="MNASRIAAAGASTLTRRIIPCLDVTAGRVVKGVNFVNLTDAGDPV FT EIARRYNEQGADELTFLDITATSDGRDLILPIIEQVASQVFIPLTVGGGVRQVSDVQRL FT LNAGADKISINSAAVANPELVRAAADYHGSQCIVVAIDARRSSAEGEPARWEVFTHGGR FT KATGLDAVAWARRMAAYGAGEILLTSMDRDGTKSGFDLELTRAVSDAVPVPVIASGGVG FT NLQHLADGVTTGRASAVLAASIFHFGQHTVRECKQYMAERGIAVRLT" FT misc_feature 154293..155024 FT /note="HMMPfam hit to PF00977, Histidine biosynthesis FT protein" FT CDS 155054..155458 FT /transl_table=11 FT /gene="hisI" FT /locus_tag="BP3774" FT /product="putative phosphoribosyl-AMP cyclohydrolase" FT /EC_number="3.5.4.19" FT /note="Similar to the N-terminal region of Salmonella FT typhimurium histidine biosynthesis bifunctional protein FT [includes: phosphoribosyl-AMP cyclohydrolase; FT phosphoribosyl-ATP pyrophosphatase] HisI SW:HIS2_SALTY FT (P10367) (203 aa) fasta scores: E(): 3.5e-12, 40.95% id in FT 105 aa, and to the full length Pseudomonas aeruginosa FT phosphoribosyl-AMP cyclohydrolase PA5066 TR:Q9HUB7 FT (EMBL:AE004920) (134 aa) fasta scores: E(): 1.1e-34, 65.62% FT id in 128 aa" FT /db_xref="GOA:Q7VSY5" FT /db_xref="InterPro:IPR002496" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSY5" FT /protein_id="CAE44030.1" FT /translation="MNTEPTWMAEVVFDENGLIPAIAQDAETGQILMVAWMSREALAET FT AATGRAVYWSRSRQRLWRKGEESGHAQDVHELRLDCDGDVILLKVHQNGGIACHTGRAS FT CFYRRLEGTASQAEWITIDPVLKDPELIYK" FT misc_feature 155150..155386 FT /note="HMMPfam hit to PF01502, Phosphoribosyl-AMP FT cyclohydrolase" FT CDS 155455..155802 FT /transl_table=11 FT /gene="hisE" FT /locus_tag="BP3775" FT /product="phosphoribosyl-ATP pyrophosphohydrolase" FT /EC_number="3.6.1.31" FT /note="Similar to the C-terminal region of Escherichia coli FT histidine biosynthesis bifunctional protein [includes: FT phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP FT pyrophosphatase] HisI SW:HIS2_ECOLI (P06989) (203 aa) fasta FT scores: E(): 0.0074, 32.22% id in 90 aa, and to the full FT length Neisseria meningitidis putative phosphoribosyl-ATP FT cyclohydrolase NMA0807 TR:Q9JVJ9 (EMBL:AL162754) (107 aa) FT fasta scores: E(): 9.6e-18, 53.77% id in 106 aa" FT /db_xref="GOA:Q7VSY4" FT /db_xref="InterPro:IPR008179" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSY4" FT /protein_id="CAE44031.1" FT /translation="MTTPTAGDDILSRIADTLATRRPEAGGDPQSSYVAKLLSKAPDAF FT LKKIGEEATELVMAAKDGQPDRIISETADLWFHCLVALTHYNLRPEDVLAELARREGLS FT GLEEKARRPRD" FT misc_feature 155485..155760 FT /note="HMMPfam hit to PF01503, Phosphoribosyl-ATP FT pyrophosphohydrolase" FT CDS 155817..156185 FT /transl_table=11 FT /locus_tag="BP3776" FT /product="MttA/Hcf106 family protein" FT /note="Similar to Homo sapiens protein kinase C interacting FT protein 1, PKCI-1 SW:HINT_HUMAN (P49773) (125 aa) fasta FT scores: E(): 3.1e-16, 44.86% id in 107 aa, and to Neisseria FT gonorrhoeae histidine triad containing protein HitA FT SW:HITA_NEIGO (O07817) (107 aa) fasta scores: E(): 6.5e-18, FT 52.29% id in 109 aa" FT /db_xref="GOA:Q7VSY3" FT /db_xref="HSSP:1AV5" FT /db_xref="InterPro:IPR019808" FT /db_xref="UniProtKB/TrEMBL:Q7VSY3" FT /protein_id="CAE44032.1" FT /translation="MSDNCIFCKIARGEIPAKKVFEDDEFVAFHDINPAAPVHLLLIPR FT RHVVSLQDIAEGDAGWLGRMTVLASRLAAGNGCNPGPDGGFRLMANSGAEGGQEVPHLH FT FHILGGPRPWKGRVAPAA" FT misc_feature 155829..156146 FT /note="HMMPfam hit to PF01230, HIT family" FT misc_feature 156087..156143 FT /note="ScanRegExp hit to PS00892, HIT family signature. FT Confirmed by InterPro eMOTIF pattern match." FT CDS 156201..156428 FT /transl_table=11 FT /gene="tatE" FT /locus_tag="BP3777" FT /product="Sec-independent protein translocase protein" FT /note="Similar to Escherichia coli Sec-independent protein FT translocase protein TatE SW:TATE_ECOLI (P25895) (67 aa) FT fasta scores: E(): 1.5e-06, 54.54% id in 55 aa, and to FT Neisseria meningitidis Sec-independent protein translocase FT protein TatA/E homologue NMA0805 SW:TATA_NEIMA (P57049) (67 FT aa) fasta scores: E(): 2.2e-10, 53.84% id in 65 aa" FT /db_xref="GOA:Q7VSY2" FT /db_xref="InterPro:IPR006312" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSY2" FT /protein_id="CAE44033.1" FT /translation="MGSFSIWHWLIVLVIIALVFGTKKLRNVGSDLGSAVKGFKEGMKD FT ASADKPADQVTQQRVSDDTIDVQAKEKSNS" FT misc_feature 156210..156263 FT /note="1 probable transmembrane helix predicted for BP3777 FT by TMHMM2.0 at aa 4-21" FT misc_feature 156210..156413 FT /note="HMMPfam hit to PF02416, mttA/Hcf106 family" FT CDS 156501..156944 FT /transl_table=11 FT /gene="tatB" FT /locus_tag="BP3778" FT /product="Sec-independent protein translocase protein" FT /note="Similar to the N-terminal regions of Escherichia FT coli Sec-independent protein translocase protein tatb tatb FT or mtta2 or b3838 or z5359 or ecs4767 SW:TATB_ECOLI FT (O69415) (171 aa) fasta scores: E(): 0.0003, 27.97% id in FT 143 aa, and Neisseria meningitidis Sec-independent protein FT translocase protein TatB homologue NMB0600 SW:TATB_NEIMB FT (Q9K0J6) (228 aa) fasta scores: E(): 1.6e-09, 39.43% id in FT 142 aa" FT /db_xref="GOA:Q7VSY1" FT /db_xref="InterPro:IPR018448" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSY1" FT /protein_id="CAE44034.1" FT /translation="MFDVSFTELMVIGVIALVVIGPERLPKVARTIGHLLGRAQRYVND FT VKSDIRREIELDELRKFKNEMDETARSMQTSLRETEDTLRDSTQALRAELDDTARDASK FT AVNGADAPAEPAPAVASDTDTRSIAPPAAATPADKTPPTGSAT" FT misc_feature 156510..156695 FT /note="HMMPfam hit to PF02416, mttA/Hcf106 family" FT CDS 156941..157741 FT /transl_table=11 FT /gene="tatC" FT /locus_tag="BP3779" FT /product="putative Sec-independent protein translocase FT protein" FT /note="Similar to Escherichia coli Sec-independent protein FT translocase protein TatC SW:TATC_ECOLI (P27857) (258 aa) FT fasta scores: E(): 5.5e-47, 49.39% id in 249 aa, and to FT Neisseria meningitidis hypothetical protein NMB0599 FT TR:Q9K0J7 (EMBL:AE002415) (256 aa) fasta scores: E(): FT 2.6e-49, 54.25% id in 247 aa" FT /db_xref="InterPro:IPR019822" FT /db_xref="UniProtKB/TrEMBL:Q7VSY0" FT /protein_id="CAE44035.1" FT /translation="MSQDASNDNPDQQQDSFISHLVELRSRLLKAAGAVVAVFIVLFLY FT PGASAIYDVLAQPMLASLPEGTRMIATGVITPFMVPVKVTMMAAFVVALPVVLYQAWAF FT VAPGLYKHEKRLALPLILSSTLLFIIGMAFCYFFVFRTVFHFIATFAPQSITPAPDIEA FT YLSFVMTMFMAFGITFEVPVAVVLLVKTGIVEVAKLRAARGYVVVGAFVIAAVVTPPDV FT VSQFMLAVPLCLLYEVGLLCARLVTPRRRGEEESEDDQALTERH" FT misc_feature 157016..157633 FT /note="HMMPfam hit to PF00902, MttB family UPF0032" FT misc_feature join(157040..157108,157190..157258,157292..157360, FT 157439..157507,157541..157594,157604..157663) FT /note="6 probable transmembrane helices predicted for FT BP3779 by TMHMM2.0 at aa 34-56, 84-106, 118-140, 167-189, FT 201-218 and 222-241" FT CDS 157819..158304 FT /pseudo FT /transl_table=11 FT /locus_tag="BP3780" FT /product="transposase (Pseudogene)" FT /note="Pseudogene. Truncated transposase for IS481 element FT fused to the N-terminal portion of the disrupted CDS" FT /db_xref="PSEUDO:CAE44036.1" FT misc_feature 157837..158010 FT /note="HMMPfam hit to PF01381, Helix-turn-helix" FT repeat_region 158025..158304 FT misc_feature 158035..158268 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(158273..158304) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 158523..159503 FT /transl_table=11 FT /locus_tag="BP3782" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni hypothetical FT protein OrfJ TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta FT scores: E(): 4.3e-43, 41.71% id in 326 aa, and to FT Agrobacterium tumefaciens hypothetical protein AGR_L_312p FT TR:AAK88723 (EMBL:AE008213) (329 aa) fasta scores: E(): FT 1.5e-38, 39.81% id in 319 aa" FT /db_xref="GOA:Q45389" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/Swiss-Prot:Q45389" FT /protein_id="CAE44037.1" FT /translation="MNMTRLLAVIGIFIATAGIAAPVSADTYPARPIQMIVPFPPGGST FT DVMARVLARTLQDSLGQPVVVQNRAGAGGVIGTDATAKSAADGYTLLLSSSSAPLAVGL FT SLMPSIPYKVLEDLVPVSMVGDVPLVLVTNPKLKLDSLDALIAQCKARPGEVAFALNAL FT GSQAHLLTELFQLRTGAAINMIPYKGSGPAVVDLLGGVVAADIENMPAVLEHIRSGNLR FT ALAILSSDRSTHFPAVPTMAELGYPEFVASPWFAVMAPKGTDPKIIVLLNRHINEALQS FT KAVVEAFAAQGATPVIATPDQTRGFIADEIQRWAGVVRETGAKLK" FT misc_feature 158523..158597 FT /note="Signal peptide predicted for BP3782 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.971 between residues 25 and 26" FT CDS 159770..160579 FT /transl_table=11 FT /gene="ptxA" FT /locus_tag="BP3783" FT /product="pertussis toxin subunit 1 precursor" FT /EC_number="2.4.2.-" FT /note="Previously sequenced as Bordetella pertussis FT pertussis toxin subunit 1 precursor, NAD-dependent FT ADP-ribosyltransferase, PtxA SW:TOX1_BORPE (P04977) (269 FT aa) fasta scores: E(): 1.5e-110, 100% id in 269 aa" FT /db_xref="GOA:P04977" FT /db_xref="InterPro:IPR003898" FT /db_xref="PDB:1BCP" FT /db_xref="UniProtKB/Swiss-Prot:P04977" FT /protein_id="CAE44038.1" FT /translation="MRCTRAIRQTARTGWLTWLAILAVTAPVTSPAWADDPPATVYRYD FT SRPPEDVFQNGFTAWGNNDNVLDHLTGRSCQVGSSNSAFVSTSSSRRYTEVYLEHRMQE FT AVEAERAGRGTGHFIGYIYEVRADNNFYGAASSYFEYVDTYGDNAGRILAGALATYQSE FT YLAHRRIPPENIRRVTRVYHNGITGETTTTEYSNARYVSQQTRANPNPYTSRRSVASIV FT GTLVRMAPVIGACMARQAESSEAMAAWSERAGEAMVLVYYESIAYSF" FT misc_feature 159770..159871 FT /note="Signal peptide predicted for BP3783 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 34 and 35" FT CDS 160619..161299 FT /transl_table=11 FT /gene="ptxB" FT /locus_tag="BP3784" FT /product="pertussis toxin subunit 2 precursor" FT /note="Previously sequenced as Bordetella pertussis FT pertussis toxin subunit 2 precursor PtxB SW:TOX2_BORPE FT (P04978) (226 aa) fasta scores: E(): 5.2e-95, 99.55% id in FT 226 aa. Similar to Bordetella pertussis pertussis toxin FT subunit 3 precursor PtxC SW:TOX3_BORPE (P04979) (227 aa) FT fasta scores: E(): 1.7e-64, 68.61% id in 223 aa. Similar to FT BP3787, 67.544% identity (67.544% ungapped) in 228 aa FT overlap" FT /db_xref="GOA:P04978" FT /db_xref="InterPro:IPR020063" FT /db_xref="PDB:1BCP" FT /db_xref="UniProtKB/Swiss-Prot:P04978" FT /protein_id="CAE44039.1" FT /translation="MPIDRKTLCHLLSVLPLALLGSHVARASTPGIVIPPQEQITQHGG FT PYGRCANKTRALTVAELRGSGDLQEYLRHVTRGWSIFALYDGTYLGGEYGGVIKDGTPG FT GAFDLKTTFCIMTTRNTGQPATDHYYSNVTATRLLSSTNSRLCAVFVRSGQPVIGACTS FT PYDGKYWSMYSRLRKMLYLIYVAGISVRVHVSKEEQYYDYEDATFETYALTGISICNPG FT SSLC" FT misc_feature 160619..160699 FT /note="Signal peptide predicted for BP3784 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.991 between residues 27 and 28" FT CDS 161293..161751 FT /transl_table=11 FT /gene="ptxD" FT /locus_tag="BP3785" FT /product="pertussis toxin subunit 4 precursor" FT /note="Previously sequenced as Bordetella pertussis FT pertussis toxin subunit 4 precursor PtxD SW:TOX4_BORPE FT (P04980) (152 aa) fasta scores: E(): 9.8e-60, 100% id in FT 152 aa" FT /db_xref="GOA:P0A3R5" FT /db_xref="InterPro:IPR015355" FT /db_xref="PDB:1BCP" FT /db_xref="UniProtKB/Swiss-Prot:P0A3R5" FT /protein_id="CAE44040.1" FT /translation="MLRRFPTRTTAPGQGGARRSRVRALAWLLASGAMTHLSPALADVP FT YVLVKTNMVVTSVAMKPYEVTPTRMLVCGIAAKLGAAASSPDAHVPFCFGKDLKRPGSS FT PMEVMLRAVFMQQRPLRMFLGPKQLTFEGKPALELIRMVECSGKQDCP" FT misc_feature 161293..161418 FT /note="Signal peptide predicted for BP3785 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.994 between residues 42 and 43" FT CDS 161724..162125 FT /transl_table=11 FT /gene="ptxE" FT /locus_tag="BP3786" FT /product="pertussis toxin subunit 5 precursor" FT /note="Previously sequenced as Bordetella pertussis FT pertussis toxin subunit 5 precursor PtxE SW:TOX5_BORPE FT (P04981) (133 aa) fasta scores: E(): 2.7e-50, 100% id in FT 120 aa" FT /db_xref="GOA:P04981" FT /db_xref="InterPro:IPR015356" FT /db_xref="PDB:1BCP" FT /db_xref="UniProtKB/Swiss-Prot:P04981" FT /protein_id="CAE44041.1" FT /translation="MQRQAGLPLKANPMHTIASILLSVLGIYSPADVAGLPTHLYKNFT FT VQELALKLKGKNQEFCLTAFMSGRSLVRACLSDAGHEHDTWFDTMLGFAISAYALKSRI FT ALTVEDSPYPGTPGDLLELQICPLNGYCE" FT CDS 162208..162891 FT /transl_table=11 FT /gene="ptxC" FT /locus_tag="BP3787" FT /product="pertussis toxin subunit 3 precursor" FT /note="Previously sequenced as Bordetella pertussis FT pertussis toxin subunit 3 precursor PtxC SW:TOX3_BORPE FT (P04979) (227 aa) fasta scores: E(): 4.4e-92, 100% id in FT 227 aa. Similar to Bordetella pertussis pertussis toxin FT subunit 2 precursor PtxB SW:TOX2_BORPE (P04978) (226 aa) FT fasta scores: E(): 3.2e-62, 68.16% id in 223 aa. Similar to FT BP3784, 67.544% identity (67.544% ungapped) in 228 aa FT overlap" FT /db_xref="GOA:P04979" FT /db_xref="InterPro:IPR020063" FT /db_xref="PDB:1BCP" FT /db_xref="UniProtKB/Swiss-Prot:P04979" FT /protein_id="CAE44042.1" FT /translation="MLINNKKLLHHILPILVLALLGMRTAQAVAPGIVIPPKALFTQQG FT GAYGRCPNGTRALTVAELRGNAELQTYLRQITPGWSIYGLYDGTYLGQAYGGIIKDAPP FT GAGFIYRETFCITTIYKTGQPAADHYYSKVTATRLLASTNSRLCAVFVRDGQSVIGACA FT SPYEGRYRDMYDALRRLLYMIYMSGLAVRVHVSKEEQYYDYEDATFQTYALTGISLCNP FT AASIC" FT misc_feature 162208..162291 FT /note="Signal peptide predicted for BP3787 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.972 between residues 28 and 29" FT CDS 162947..163255 FT /transl_table=11 FT /gene="ptlA" FT /locus_tag="BP3788" FT /product="pertussis toxin transport protein" FT /note="Previously sequenced as Bordetella pertussis FT pertussis toxin transport protein PtlA TR:Q45390 FT (EMBL:M14378) (102 aa) fasta scores: E(): 5.8e-38, 100% id FT in 102 aa. Similar to Brucella suis and Brucella abortus FT putative type IV secretion system protein VirB2 TR:Q9RPY3 FT (EMBL:AF141604) (105 aa) fasta scores: E(): 2e-13, 49.48% FT id in 97 aa" FT /db_xref="GOA:Q45390" FT /db_xref="InterPro:IPR007039" FT /db_xref="UniProtKB/Swiss-Prot:Q45390" FT /protein_id="CAE44043.1" FT /translation="MNPLKDLRASLPRLAFMAACTLLSATLPDLAQAGGGLQRVNHFMA FT SIVVVLRGASVATVTIAIIWAGYKLLFRHADVLDVVRVVLAGLLIGASAEIARYLLT" FT misc_feature 162947..163039 FT /note="Signal peptide predicted for BP3788 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.977 between residues 31 and 32" FT misc_feature join(162989..163057,163076..163144,163187..163249) FT /note="3 probable transmembrane helices predicted for FT BP3788 by TMHMM2.0 at aa 15-37, 44-66 and 81-101" FT CDS 163274..163588 FT /transl_table=11 FT /gene="ptlB" FT /locus_tag="BP3789" FT /product="pertussis toxin transport protein" FT /note="Previously sequenced as Bordetella pertussis FT pertussis toxin transport protein PtlB TR:Q45391 FT (EMBL:M14378) (104 aa) fasta scores: E(): 1.4e-43, 100% id FT in 104 aa. Similar to Brucella suis and Brucella abortus FT putative type IV secretion system protein VirB3 TR:Q9RPY2 FT (EMBL:AF141604) (116 aa) fasta scores: E(): 3.7e-16, 45.36% FT id in 97 aa" FT /db_xref="GOA:Q45391" FT /db_xref="InterPro:IPR007792" FT /db_xref="UniProtKB/Swiss-Prot:Q45391" FT /protein_id="CAE44044.1" FT /translation="MRDPLFKGCTRPAMLMGVPATPLAVCSGTIALLGIWFSIAFLALF FT PVALLAMRIMIRRDDQQFRLIWLYLRMRWLSRDRTHAFWQSTVYAPLRYAERRRRLRKP FT " FT misc_feature 163358..163426 FT /note="1 probable transmembrane helix predicted for BP3789 FT by TMHMM2.0 at aa 29-51" FT CDS 163585..166059 FT /transl_table=11 FT /locus_tag="BP3790" FT /product="putative bacterial secretion system protein" FT /note="Similar to Agrobacterium tumefaciens (plasmid FT pTiC58) putative T-DNA transport apparatus protein VirB4 FT SW:VIB4_AGRT9 (P05353) (789 aa) fasta scores: E(): 2.9e-40, FT 32.68% id in 817 aa, and to Brucella abortus putative type FT IV secretion system protein VirB4 TR:Q9KIS9 (EMBL:AF226278) FT (831 aa) fasta scores: E(): 1.2e-176, 52.61% id in 823 aa" FT /db_xref="GOA:Q7VSX9" FT /db_xref="InterPro:IPR018145" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSX9" FT /protein_id="CAE44045.1" FT /translation="MNRRGGQTAFAAIARNERAIAAFIPYSSHLTDTTLITHGADLVRT FT WRVQGIAFESAEPELVSQRHEQLNGLWRAISCEQVALWIHCIRRKTQAGLDARYENPFC FT RALDASYNARLNARQAMTNEFYLTLVYRPGHAALGKRAHHGQAEVRRQLLAHVRRMDEI FT GSLIETTLRSHGENHEQAITVLGCETDSAGRRYSRTLTLLEFLLTGHWQPVRVPAGPVD FT AYLGSSRILAGAEMMELRAPTCRRYAQFIDFKEYGTHTEPGMLNALLYEDYEYVITHSF FT SAVGKRQALAYLQRQRAQLANVQDAAYSQIDDLAHAEDALVNGDFVIGEYHFSMMILGA FT DPRQLRRDVSSAMTRIQERGFLATPVTLALDAAFYAQLPANWAYRSRKAMLTSRNFAGL FT CSFHNFYGGKRDGNPWGPALSLLSTPSGQPFYFNFHHSGLDEDCRGQMMLGNTRIIGQS FT GSGKTVLLNFLLCQLQKFRSADADGLTTIFFDKDRGAEICIRALDGQYLRIRDGEPTGF FT NPLQLPCTDRNVMFLDSLLAMLARAHDSPLTSAQHATLATAVRTVLRMPASLRRMSTLL FT QNITQATSEQRELVRRLGRWCRDDGAGGTGMLWWVFDNPNDCLDFSRPGNYGIDGTAFL FT DNAETRTPISMYLLHRMNEAMDGRRFVYLMDEAWKWIDDPAFAEFAGDQQLTIRKKNGL FT GVFSTQMPSSLLGARVAASLVQQCATEIYLPNPRADRAEYLDGFKCTETEYQLIRSMAE FT DSHLFLVKQGRQAVVAQLDLSGMDDELAILSGNARNLRCFEQALALTRERDPNDWIAVF FT HRLRREASAGLR" FT misc_feature 164950..164973 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 166067..167458 FT /transl_table=11 FT /locus_tag="BP3791" FT /product="putative membrane protein" FT /note="Poor database matches. C-terminal region is similar FT to Caulobacter crescentus hypothetical protein CC2420 FT TR:Q9A5M7 (EMBL:AE005911) (386 aa) fasta scores: E(): FT 0.019, 26.98% id in 352 aa, and Escherichia coli plasmid FT pKM101 putative conjugal transfer protein TR:O50333 FT (EMBL:X81123) (342 aa) fasta scores: E(): 0.002, 22.22% id FT in 315 aa" FT /db_xref="GOA:Q7VSX8" FT /db_xref="InterPro:IPR007688" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSX8" FT /protein_id="CAE44046.1" FT /translation="MAGLSRILLSCTLACLLAGQAAQASVDDPTRAGGDNRVRALRADQ FT ARRDVLLTACRDDPGHRRGEPDCVNAERAQALQQWQAAAMTSVDAAFSDLAGALRNAAP FT RRMEAAIVRLTRQLQPLVYSMMTLLVLLTGYALLARRDRPFEWHIRHALLVAVVTSLAL FT SPDRYLSTVVAGVQDVAGWLSGPWTAPDGAAGRGGLAQLDQFAAQAQAWVAQLAGQAAN FT DANPGSAVNWLLCAMIVAASAGGWLCLAASLLIVPGLIVTLLLSLGPLFLVLLLFPALQ FT RWTNAWLGALVRALVFMALGTPAVGLLSDVLAGALPAGLPQRFATDPLRSTMLAATLCA FT TATLMLLTLVPLASSVNAGLRRRLWPNAAHPGLAQAHRQAAARQYAPRPAAAAAAAGPH FT QAGTYAASATPAPAPARPAPSFPAHAYRQYALGGARRPPPRVRRDDRPAPAPDRRVLPR FT KPNLP" FT misc_feature 166067..166138 FT /note="Signal peptide predicted for BP3791 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.807 between residues 24 and 25" FT misc_feature join(166415..166483,166748..166816,166829..166897, FT 166934..167002,167060..167128) FT /note="5 probable transmembrane helices predicted for FT BP3791 by TMHMM2.0 at aa 117-139, 228-250, 255-277, 290-312 FT and 332-354" FT CDS 167455..167640 FT /transl_table=11 FT /locus_tag="BP3792" FT /product="putative bacterial secretion system protein" FT /note="Similar to Brucella suis and Brucella abortus FT putative type IV secretion system protein VirB7 TR:Q9RPX8 FT (EMBL:AF141604) (57 aa) fasta scores: E(): 0.51, 37.2% id FT in 43 aa" FT /db_xref="GOA:Q7VSX7" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSX7" FT /protein_id="CAE44047.1" FT /translation="MIHAHSNARLLRWAILAIAPVTLGACAPNGPPGLPYPDGKPLIPI FT NTAAPEQGSSCQTRAP" FT misc_feature 167500..167532 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 167619..168320 FT /transl_table=11 FT /locus_tag="BP3793" FT /product="putative bacterial secretion system protein" FT /note="Similar to Agrobacterium tumefaciens (plasmid FT pTiC58) putative T-DNA transport apparatus protein Virb8 FT SW:VIB8_AGRT5 (P17798) (237 aa) fasta scores: E(): 6.4e-11, FT 31.96% id in 219 aa, and to Brucella suis and Brucella FT abortus putative type IV secretion system protein VirB8 FT TR:Q9RPX7 (EMBL:AF141604) (239 aa) fasta scores: E(): FT 8e-38, 40.77% id in 233 aa" FT /db_xref="GOA:Q7VSX6" FT /db_xref="InterPro:IPR007430" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSX6" FT /protein_id="CAE44048.1" FT /translation="MPDPRPLTPDQTHGRGHAEAAVDWEASRLYRLAQSERRAWTVAWA FT ALAVTALSLIAIATMLPLKTTIPYLIEVEKSSGAASVVTQFEPRDFTPDTLMNQYWLTR FT YVAARERYDWHTIQHDYDYVRLLSAPAVRHDYETSYEAPDAPDRKYGAGTTLAVKILSA FT IDHGKGVGTVRFVRTRRDADGQGAAESSIWVATVAFAYDQPRALTQAQRWLNPLGFAVT FT SYRVDAEAGQP" FT misc_feature 167733..167801 FT /note="1 probable transmembrane helix predicted for BP3793 FT by TMHMM2.0 at aa 39-61" FT CDS 168317..169138 FT /transl_table=11 FT /locus_tag="BP3794" FT /product="putative bacterial secretion system protein" FT /note="Similar to Agrobacterium tumefaciens (plasmid FT pTiC58) putative T-DNA transport apparatus protein VirB9 FT SW:VIB9_AGRT5 (P17799) (293 aa) fasta scores: E(): 0.15, FT 27.88% id in 269 aa, and to Brucella suis and Brucella FT abortus putative type IV secretion system protein VirB9 FT TR:Q9RPX6 (EMBL:AF141604) (289 aa) fasta scores: E(): FT 7.4e-34, 43.66% id in 284 aa" FT /db_xref="GOA:Q7VSX5" FT /db_xref="InterPro:IPR014148" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSX5" FT /protein_id="CAE44049.1" FT /translation="MMAARMMAAGLAATALSAHAFRIPTPGEQDARIQTVPYHPEEVVL FT VRAWNGYVTRIVFDEQEKIIDVAAGFADGWQFSPEGNVLYIKAKSFPAQGSPAQAPEPG FT LWNTNLLVKTDRRLYDFDLVLASADAATPQALQRSRMAYRLQFRYPAAPQAASRASPVG FT PAVPAGALNRRYAMQVGNGSDGIAPIAAYDDGRHTWLTFRPGQPFPAVFAVAPDGTETL FT VNLHIDNQSLVIHRVAPVLMLRSGASVIRIVNQNGDASESPAFECHAEPAL" FT misc_feature 168317..168376 FT /note="Signal peptide predicted for BP3794 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.974) with cleavage site FT probability 0.695 between residues 20 and 21" FT CDS 169119..170243 FT /transl_table=11 FT /locus_tag="BP3795" FT /product="putative bacterial secretion system protein" FT /note="Similar to Agrobacterium tumefaciens (plasmids FT pTi15955 and pTiA6) putative T-DNA transport apparatus FT protein VirB10 SW:VIBX_AGRT5 (P17800) (377 aa) fasta FT scores: E(): 7.1e-18, 38.01% id in 313 aa, and to Brucella FT abortus putative type IV secretion system protein VirB10 FT TR:Q9KIS6 (EMBL:AF226278) (388 aa) fasta scores: E(): FT 5e-22, 36.36% id in 363 aa" FT /db_xref="GOA:Q7VSX4" FT /db_xref="InterPro:IPR005498" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSX4" FT /protein_id="CAE44050.1" FT /translation="MLNRPSSPDGGEAHAWPPDPEIPVFANAEHAHRRPLRWMFALVAV FT ALSCLLATGIWRSRAAPPHAATQTVAPAGQALPPGRIFTVHPREPEPAPLPDMPAAPDP FT ILPQPRPAPPVPPPPIRAPYDYDEPAPRRDSAALKSGPAMMVATAARLGQTERAGMADD FT GVSADAATLIGRNVSRATRSGGRDYRLLPGTFIDCILQTRIVTNVPGLTTCIVSRDVYS FT ASGKRVLVPRGTTVVGEYRADLAQGSQRIYVAWSRLFMPSGLTIELASPAVDGTGAAGL FT PGVVDDKFAQRFGGALLLSVLGDATSYMLARATDARHGVNVNLTAAGTMNSLAASALNN FT TINIPPTLYKNHGDQIGILVARPLDFSILRGTNE" FT CDS 170236..171255 FT /transl_table=11 FT /locus_tag="BP3796" FT /product="putative bacterial secretion system protein" FT /note="Similar to Agrobacterium tumefaciens (plasmids FT pTi15955 and pTiA6) T-DNA transport apparatus protein FT VirB11 SW:VIBY_AGRT9 (P05360) (343 aa) fasta scores: E(): FT 1.4e-25, 35.91% id in 323 aa, and to Brucella abortus FT putative type IV secretion system protein VirB11 TR:Q9KIS5 FT (EMBL:AF226278) (362 aa) fasta scores: E(): 1e-48, 47.91% FT id in 336 aa" FT /db_xref="GOA:Q7VSX3" FT /db_xref="InterPro:IPR001482" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSX3" FT /protein_id="CAE44051.1" FT /translation="MNDAAPDRQASVDFHLQALHPWLSRQDIAEICVNRPGQLWYEDRN FT GWNRQESGALTLDHLHALATATARFCDRDICPERPLLAASLPGGERVQIVVPPACEPGT FT LSLTIRKPARRIWPLSELLRDTLDLPGVPGASQARPDPLLDPWRRGAWDDFLRLAVQAG FT KAILVAGQTGSGKTTLMNALSGEIPPRERIVTIEDVRELRLDPATNHVHLLYGTPTEGR FT TAAVSATELLRAALRMAPTRILLAELRGGEAFDFLQACASGHSGGISTCHAASADMALQ FT RLTLMCMQHPNCQMLPYSTLRALVESVIDIVVVVERRAGQGARRRVVDIWYRDGLPAP" FT misc_feature 170731..171102 FT /note="HMMPfam hit to PF00437, Bacterial type II secretion FT system protein" FT misc_feature 170743..170766 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT tRNA 171312..171387 FT /note="tRNA Asn anticodon GTT, Cove score 87.19" FT CDS complement(171461..172351) FT /transl_table=11 FT /locus_tag="BP3797" FT /product="putative membrane protein" FT /note="Similar to Escherichia coli probable amino acid FT metabolite efflux pump EamA SW:EAMA_ECOLI (P31125) (299 aa) FT fasta scores: E(): 2.9e-09, 27.39% id in 303 aa, and to FT Pseudomonas aeruginosa hypothetical protein PA3897 FT TR:Q9HXB6 (EMBL:AE004807) (300 aa) fasta scores: E(): FT 9.8e-78, 73.44% id in 290 aa" FT /db_xref="GOA:Q7VSX2" FT /db_xref="InterPro:IPR000620" FT /db_xref="UniProtKB/TrEMBL:Q7VSX2" FT /protein_id="CAE44052.1" FT /translation="MNLTLYLLTVLIWGTTWIAIKLQLGVVAIPVSIFYRFALAALIMM FT AALALLRKLQKLDLRGHLLCLGQGLFLFCLNFLCFYAATQWIPSGLVSVVFSAATIWNA FT VNARLWFGTPIAPRVMLGGACGLAGLLLLFWPELASHAAEAGTLKGLGLALLGTLCFST FT GNMLSAAQQRAGIRPLTGNAYSMTYGALILLAGTLAAGVPFAFDPSPTYVGALLFLAVP FT GSIVGFTAYLTLVGRMGPARAAYCTVLFPVVALTISTFVEGYRWTPQALAGLALVMLGN FT VLVFARWRARTARAA" FT misc_feature complement(171494..171877) FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6" FT misc_feature complement(join(171497..171553,171569..171625, FT 171647..171712,171743..171808,171848..171898, FT 171944..171994,172016..172081,172097..172162, FT 172202..172267,172298..172351)) FT /note="10 probable transmembrane helices predicted for FT BP3797 by TMHMM2.0 at aa 44-66, 76-98, 111-133, 138-160, FT 167-184, 199-216, 229-251, 261-283, 290-309 and 314-333" FT misc_feature complement(171947..172321) FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6" FT CDS 172494..173387 FT /transl_table=11 FT /locus_tag="BP3798" FT /product="AraC family regulatory protein" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator PA3898 TR:Q9HXB5 (EMBL:AE004807) FT (293 aa) fasta scores: E(): 1.4e-56, 53.1% id in 290 aa, FT and to Pantoea citrea regulatory protein GdhBR TR:Q9Z676 FT (EMBL:AF102513) (288 aa) fasta scores: E(): 2.5e-29, 36.95% FT id in 276 aa" FT /db_xref="GOA:Q7VSX1" FT /db_xref="HSSP:1D5Y" FT /db_xref="InterPro:IPR018062" FT /db_xref="UniProtKB/TrEMBL:Q7VSX1" FT /protein_id="CAE44053.1" FT /translation="MSLAASDPAGFSVFRTLAGAGTARLERAATLGDGVAAAQWRRAGH FT EVVDYDHPGHHTLSLYLHGGEKSFRVGNDGYGGAGKFCVLPSEHRSRWNMNDTVRFLHL FT YIAPQRLAREAVWRLDCEPRELALRDRTYIQDPALGQACHILLDADWTDPSQRLAASAA FT SETVLHHLLVQGTGRRPGMPARGGLAPVVRRRMRDYIEAHLHEPLTLERLAAQAALSTY FT HFARMFHVSFGVPPHLWVQARRLARAQALLRAPGQAGLDAVAQASGFGSASHLSRVFRQ FT ATAATPGQYRAGARAH" FT misc_feature 173112..173375 FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family" FT misc_feature 173223..173354 FT /note="ScanRegExp hit to PS00041, Bacterial regulatory FT proteins, araC family signature." FT CDS 173470..173844 FT /transl_table=11 FT /locus_tag="BP3799" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT SMC03833 TR:CAC47795 (EMBL:AL591793) (125 aa) fasta scores: FT E(): 8.8e-09, 40.18% id in 107 aa, and to Rhizobium loti FT hypothetical protein MLR4351 TR:Q98E91 (EMBL:AP003003) (120 FT aa) fasta scores: E(): 1.6e-07, 39.78% id in 93 aa" FT /db_xref="InterPro:IPR010652" FT /db_xref="UniProtKB/TrEMBL:Q7VSX0" FT /protein_id="CAE44054.1" FT /translation="MPIATSAYEHAYSDRRFWRKLRGHAAGAGRQALEKALWLYFAVQN FT PATPKWARRVIYGALGYFVLPLDAIPDLAPLVGYTDDLGVMTAALATVAFAITDDVKAQ FT ARGKLDQWLGPAANDAAGNG" FT CDS 173822..175231 FT /transl_table=11 FT /locus_tag="BP3800" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PA0345 TR:Q9I6E8 (EMBL:AE004472) (461 aa) fasta FT scores: E(): 1.1e-68, 49.78% id in 460 aa, and to Neisseria FT meningitidis putative integral membrane protein NMA1899 FT TR:Q9JTB3 (EMBL:AL162757) (449 aa) fasta scores: E(): FT 9.2e-20, 31.6% id in 443 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VSW9" FT /protein_id="CAE44055.1" FT /translation="MMPPATGSTHRSAVWLAETVRLREEHWGPLEDADAVRQARQLAPD FT FTLRILARAQALGRREGLQDLLVHWRQGAALTFVVLAVAALLAGVGVALGALGSGARPV FT NVLWALDALLGLHALTFVLWLASFALRPRAAGLGGIWLWATRKLARGPDAALIPQALLD FT LLARAGALRWLLGAVSHILWLAALCAALATLLIVLSTASYRFVWATTLLQPETFVTLTQ FT ALGWLPGQLGFALPDAALVRASDGAQVLPATAQVQWSIWLLGALVCYGIAPRLLAALYC FT LAMAARALRGLRLDTSLPGYAVLRDRLLPPAASTGIDRPADPLHAPRMIAAQVLPDLAN FT RPVLAALELAPDQPWPPAGLPANVFDAGNLDTREQRSALLDALARSAASRLLIACDARQ FT TPDRGTLALLAELSDKAAQTRVWLLQAGAAGAGQGRGSLWQARLLDAGLPEAAILRDAD FT HPLRWLEAAHD" FT misc_feature join(174044..174112,174131..174199,174347..174415, FT 174434..174502,174599..174667) FT /note="5 probable transmembrane helices predicted for FT BP3800 by TMHMM2.0 at aa 75-97, 104-126, 176-198, 205-227 FT and 260-282" FT CDS 175224..176606 FT /transl_table=11 FT /locus_tag="BP3801" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PA0344 TR:Q9I6E9 (EMBL:AE004472) (459 aa) fasta FT scores: E(): 6.6e-91, 58.07% id in 458 aa, and to Neisseria FT meningitidis hypothetical protein NMB1644 TR:Q9JYD1 FT (EMBL:AE002515) (446 aa) fasta scores: E(): 5.1e-40, 39.78% FT id in 465 aa" FT /db_xref="GOA:Q7VSW8" FT /db_xref="InterPro:IPR002917" FT /db_xref="UniProtKB/TrEMBL:Q7VSW8" FT /protein_id="CAE44056.1" FT /translation="MTEAALRIAVVGHTNTGKTSLLRTLTRNPDFGEVADQPGTTRHVE FT GARLAIDNAAAIEWFDTPGMEDSIALLEYLERLQAPGERLDGPARVRRFLESPEAHRRF FT EQEARVLRKLLECDAGLYVIDARDPVLGKHRDELAILASCARPLLPVLNFVNAPEHRAD FT QWREAMARLGLHAVLEFDTVAPPLDGEAQLYARLAALLDRHAAMLQRLAQALAQQREQR FT RQAACVLVADLLVDVAALHVSSPGDEAALQEAAATLREQVRRREQACVDALLALYNFHR FT DDYDGAELPLQGERWGMDLFHPQALKDMGVQLGVGMAAGAMAGAAVDLLSAGLSLGTGM FT LIGAAAGGLWQGVERLGKRVAGKLRGYRELSVDDPIVRLLALRQRQLIHALERRGHAAR FT TPVQLQRPDDRAWQSGPLPDGLKEARSRPEWSALGDRYQEDERRKRVVAQLARQLAQAG FT DA" FT misc_feature 175257..175280 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 176941..178545 FT /transl_table=11 FT /locus_tag="BP3802" FT /product="putative extracellular solute-binding protein" FT /note="Similar to Rhodobacter sphaeroides f. sp. FT denitrificans dipeptide transport protein DppA TR:Q9F1X4 FT (EMBL:AB036425) (533 aa) fasta scores: E(): 7.6e-14, 28.18% FT id in 550 aa, and to Rhizobium meliloti putative FT peptide-binding periplasmic ABC transporter protein FT SMC02417 TR:CAC47172 (EMBL:AL591791) (520 aa) fasta scores: FT E(): 1.3e-53, 37.81% id in 521 aa" FT /db_xref="GOA:Q7VSW7" FT /db_xref="HSSP:1B52" FT /db_xref="InterPro:IPR000914" FT /db_xref="UniProtKB/TrEMBL:Q7VSW7" FT /protein_id="CAE44057.1" FT /translation="MRISPFIKHTALALAIAAAGLSATANAKTFRWSYQGDATSMDPMA FT LNETFTLGFQGNIYETLAGYDGELKLVPLLAESWENTEPTKWVFKLRKGVKFHDGSPFT FT ADDVIFSWKRSLTPGSDMKGYGAKASEIRKIDDHTIEVITATPNPILPREWVFLYIMSK FT SWSEKNKTTEATNVKGDNQGNYANLHTNGTGPFMVTERQPDVKTVLKRFDGYWDKNIKT FT NIDEVVFQPISQEATRVAALISGEMDLVQPVPVQDWKRLDDAPGVRPLTAPEARAIFIG FT MDQARDELLFSDVKGKNPFKDARVREAVVLAVDTKAINDKIMRGAAKPLGSLIATAING FT YDDSFGAPIKPDVERAKKLLAEAGYPKGFTVTLDCPNDRYVNDEKVCQAVAGMLARVGI FT KINLLAQTKSKYFGKILLQAGNQTSMYMLGWTPSSIDAHNALLNLAACRDAKTAAGQFN FT LGGYCNKKVDELTAQIGVETDQAKRNAMIKEAFEIVRKEYGYLPLHQQPMSWGVKDNIK FT LIQRADDVLDLRNVVMP" FT misc_feature 176941..177021 FT /note="Signal peptide predicted for BP3812 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.542 between residues 27 and 28" FT misc_feature 176968..177396 FT /note="HMMPfam hit to PF00496, Bacterial extracellular FT solute-binding proteins, family 5" FT misc_feature 177514..178491 FT /note="HMMPfam hit to PF00496, Bacterial extracellular FT solute-binding proteins, family 5" FT CDS 178623..179594 FT /transl_table=11 FT /locus_tag="BP3803" FT /product="putative transport system permease protein" FT /note="Similar to Bacillus subtilis oligopeptide transport FT system permease protein AppB SW:APPB_BACSU (P42062) (317 FT aa) fasta scores: E(): 3.4e-37, 38% id in 321 aa, and to FT Agrobacterium tumefaciens AGR_L_368p TR:AAK88754 FT (EMBL:AE008216) (332 aa) fasta scores: E(): 6.1e-73, 59.69% FT id in 325 aa. Similar to BP3236, 70.533% identity (70.533% FT ungapped) in 319 aa overlap" FT /db_xref="GOA:Q7VSW6" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7VSW6" FT /protein_id="CAE44058.1" FT /translation="MLAFIARRLFQSLLVMLTVALIAFSMFRYVGDPIASMVGQDTTPQ FT QRAQLRVDLGLDDPFVVQFARFVGNAVQGDFGISYRQRRPVAELLEERLPATLELSFVS FT ALMALVFGIPMGIYTALRRHGVLSKTFMALSLAGISLPTFLIGILLILVFGVQLRWLPS FT FGRGEVISLGWWSTGLLTRSGLAALIMPAITLALFQMTLIMRLVRAEMLEVLRTDFIKF FT ARARGLPERLINFRHALKNTLVPVITITGLQLGSIIAFAIITETVFQWSGMGLLFIQAI FT SMVDIPVMAAYLVLIAFFFVVINLIVDMLYFAVDPRLRVQSK" FT misc_feature join(178647..178715,178926..178985,179022..179090, FT 179175..179243,179343..179411,179496..179564) FT /note="6 probable transmembrane helices predicted for FT BP3803 by TMHMM2.0 at aa 23-45, 116-135, 148-170, 199-221, FT 255-277 and 306-328" FT misc_feature 179253..179468 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT CDS 179605..180531 FT /transl_table=11 FT /locus_tag="BP3804" FT /product="putative transport system permease protein" FT /note="Similar to Escherichia coli dipeptide transport FT system permease protein DppC SW:DPPC_ECOLI (P37315) (300 FT aa) fasta scores: E(): 6.7e-20, 39.79% id in 294 aa, and to FT Agrobacterium tumefaciens AGR_L_366p TR:AAK88753 FT (EMBL:AE008216) (315 aa) fasta scores: E(): 1.3e-63, 56% id FT in 300 aa" FT /db_xref="GOA:Q7VSW5" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7VSW5" FT /protein_id="CAE44059.1" FT /translation="MIARLAPYFARASDSDLWHSFKRSPGAIISAVVTLIIVLGALAAP FT LVAPHNPFDLASLNIMDANTPPAWEADGNSAFVLGTDDQGRDILSAILYGSRVSLLVGF FT ASVLFAMVLGVTLGLISGYAGGRVDSIIMRIADVQLLFPAILVALLIDGVARGLLPRDM FT HDKLALYVLIFAIGISGWVQYARTVRGSTLVERNKEYVQAARLIGIGPFTILRRHILPN FT VMGPVLVIATIHLAIAIITEAMLSFLGVGVPPTAPSLGTLIRIGNSYLFSGMWWISIFS FT GIALVALVLSVNLLGDWLRDALNPKLR" FT misc_feature join(179680..179748,179905..179973,179992..180060, FT 180103..180156,180259..180327,180424..180492) FT /note="6 probable transmembrane helices predicted for FT BP3804 by TMHMM2.0 at aa 26-48, 101-123, 130-152, 167-184, FT 219-241 and 274-296" FT misc_feature 180178..180408 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature 180181..180267 FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign. Confirmed by FT InterPro eMOTIF pattern match." FT CDS 180539..180925 FT /pseudo FT /transl_table=11 FT /locus_tag="BP3805" FT /product="N-terminal region of a probable ABC transporter, FT ATP-binding protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. The C-terminal region of this CDS is FT BP0167. Similar to the N-terminal regions of Escherichia FT coli dipeptide transport ATP-binding protein DppD FT SW:DPPD_ECOLI (P37314) (327 aa) fasta scores: E(): 1.2e-11, FT 39.84% id in 128 aa, and Rhizobium meliloti putative FT oligopeptide transport ATP-binding ABC transporter protein FT SMC02423 TR:CAC47177 (EMBL:AL591791) (327 aa) fasta scores: FT E(): 3.8e-19, 60.31% id in 126 aa." FT /db_xref="PSEUDO:CAE44060.1" FT misc_feature 180656..180679 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(180922..181872) FT /transl_table=11 FT /locus_tag="BP3806" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7VSW4" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7VSW4" FT /protein_id="CAE44061.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLNLHS" FT repeat_region 180922..180953 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(180922..181974) FT misc_feature complement(180958..181491) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(181943..181974) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 182042..183268 FT /transl_table=11 FT /gene="argJ" FT /locus_tag="BP3807" FT /product="arginine biosynthesis bifunctional protein" FT /EC_number="2.3.1.35" FT /EC_number="2.3.1.1" FT /note="Similar to Neisseria gonorrhoeae arginine FT biosynthesis bifunctional protein ArgJ [includes: glutamate FT N-acetyltransferase; amino-acid acetyltransferase] ArgJ FT SW:ARGJ_NEIGO (P38434) (406 aa) fasta scores: E(): 2.8e-78, FT 55.61% id in 410 aa, and to Pseudomonas aeruginosa FT glutamate N-acetyltransferase PA4402 TR:Q9HW04 FT (EMBL:AE004856) (405 aa) fasta scores: E(): 4.9e-78, 57.21% FT id in 409 aa" FT /db_xref="GOA:Q7VSW3" FT /db_xref="InterPro:IPR002813" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSW3" FT /protein_id="CAE44062.1" FT /translation="MAVNLQIPSESEILPVAGVEIGVAEAGIRKAGRRDLTVFRLAPGS FT AVAGVFTRNRFRAAPVQVCEAHLAQGGPIRALVVNTGNANAGTGAPGLKNAQDTCAALG FT KLLDVPAEQILPFSTGVILEPLPMDRLTAGLPAAVADLRADGWYGAAHGIMTTDTLPKI FT HSRRVNIGGKTVTITGISKGAGMIRPNMATMLGFLATDAGIAQPLLRQLAIELADVSFN FT RITVDGDTSTNDSFILIATGQAGVTVDSAGDAAYAALRDALAAAATDLAQKIVRDAEGA FT TKFMTIRVEEAGNTEEALKVAYAVAHSPLVKTAFFASDPNLGRILAAIGYAGIDDLDVS FT RLRLWLGDVLVAVDGGRNPDYQEADGQRVMKQAEILVRIALGRGQVADTVYTCDFSHEY FT VTINADYRS" FT misc_feature 182096..183265 FT /note="HMMPfam hit to PF01960, ArgJ family" FT CDS 183468..184334 FT /transl_table=11 FT /locus_tag="BP3808" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein NMA1415 TR:Q9JUA7 (EMBL:AL162755) (287 aa) fasta FT scores: E(): 6.7e-54, 56.38% id in 282 aa, and to FT Pseudomonas aeruginosa hypothetical protein PA2823 FT TR:Q9I020 (EMBL:AE004709) (296 aa) fasta scores: E(): FT 1.3e-48, 50% id in 288 aa" FT /db_xref="GOA:Q7VSW2" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VSW2" FT /protein_id="CAE44063.1" FT /translation="MTATDLTPLLARAERVLAQLEAWLPPAPPDIDWSAHAYRWRKRGS FT RGWLDAVRHVARIELDDLQHIERQKDIIDRNTRQFLESKPANNVLMTGARGTGKSSLVK FT AMLAAYGDRGLRLIEADKSDLGDLADIVELVAARPERYIVFCDDLSFEEGEAGYKALKS FT VLDGSVAASGDNVLIYATSNRRHLMPEYMSENLAAKHQPDGEIHPGETVEEKISLSERF FT GLWLSFYPFKQDDYLDIVYHWLRELNCPADQIEASRTEALQWTLERGSRSGRVAYQFAR FT DWAARHV" FT misc_feature 183744..183767 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 184327..185289 FT /transl_table=11 FT /locus_tag="BP3809" FT /product="conserved hypothetical protein" FT /note="N-terminus is similar to Proteus vulgaris mutator FT protein MutT SW:MUTT_PROVU (P32090) (112 aa) fasta scores: FT E(): 6.6e-08, 43.15% id in 95 aa, and to Xylella fastidiosa FT bifunctional dGTP-pyrophosphohydrolase/thiamine phosphate FT synthase XF1120 TR:Q9PEA8 (EMBL:AE003948) (320 aa) fasta FT scores: E(): 3.5e-29, 38.75% id in 320 aa" FT /db_xref="GOA:Q7VSW1" FT /db_xref="HSSP:1PUQ" FT /db_xref="InterPro:IPR020084" FT /db_xref="UniProtKB/TrEMBL:Q7VSW1" FT /protein_id="CAE44064.1" FT /translation="MSEKIVDVAAGLILRPDGQLLLGQRPEGKPWAGWWELPGGKLEPG FT ETVLQALARELHEELGIRVTEAHPWVTYVHVYPHTTVRLAFCHVTGWEGEPRGLENQRL FT EWVDPARAHEVGDLLPAALPPLRWLQLPTAYAISAIGAPAALADFTARLRQALDGGLKL FT VLLREPDWPGGADAASLRDAMQAILAQCRAAGARLLVSSRHPQAWWREADGVHLTARDA FT QALKQRPALPEGALVGVSAHGHAEIVHARDLGADFAVLGPVLATASHPEQAPLGWPGFA FT AGIRDAGMPVYALGGQSPATLAEARLHGAHGIAGIRGLL" FT misc_feature 184339..184701 FT /note="HMMPfam hit to PF00293, MutT-like domain" FT misc_feature 184444..184509 FT /note="ScanRegExp hit to PS00893, Nudix hydrolase FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 184876..185283 FT /note="HMMPfam hit to PF02581, Thiamine monophosphate FT synthase/TENI" FT repeat_region 185300..185328 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS1002 element encoding BP3810" FT repeat_region 185300..186340 FT /note="IS1002 insertion sequence" FT CDS 185390..186340 FT /transl_table=11 FT /locus_tag="BP3810" FT /product="transposase" FT /note="transposase for IS1002 element" FT /db_xref="GOA:Q7TT95" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TT95" FT /protein_id="CAE44065.1" FT /translation="MNNHKHARLTRLGRALLVNRVMQQNWTMRQASQAAGVSLRTGYKW FT LARFRSEGLDGLLDRSSRPHRSPKACAPEQVEHFAQQRRQRLPLWRIAREAGRSLATVA FT RYMERIGLSRLASLEPPAPVRRYERASPGELLHIDTKRLGRIRGVGHRITGDRAQNRNR FT GIGWDAVHLAIDDFSRVSFARILDDEGGDQCAEFLRQATAYYASLGVRIDRVMTDNGSG FT YVSRTFRAVCVELGIRHIRTRPYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQ FT PFIDRYNWCRPHSALGHQPPITRIPDVNNLLRIDS" FT misc_feature 185771..186295 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(186312..186340) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS1002 element encoding BP3810" FT repeat_region 186337..186368 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 186337..187389 FT CDS 186439..187389 FT /transl_table=11 FT /locus_tag="BP3811" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE44066.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 186820..187353 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(187358..187389) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(187386..188870) FT /transl_table=11 FT /locus_tag="BP3812" FT /product="putative outer membrane efflux protein" FT /note="Similar to Pseudomonas aeruginosa outer membrane FT protein precursor OprM SW:OPRM_PSEAE (Q51487) (485 aa) FT fasta scores: E(): 2.1e-35, 32.58% id in 488 aa, and to FT Pseudomonas aeruginosa probable outer membrane lipoprotein FT precursor PA2525 TR:Q9I0V8 (EMBL:AE004680) (498 aa) fasta FT scores: E(): 2e-79, 57.41% id in 479 aa" FT /db_xref="GOA:Q7VSW0" FT /db_xref="InterPro:IPR010131" FT /db_xref="UniProtKB/TrEMBL:Q7VSW0" FT /protein_id="CAE44067.1" FT /translation="MPGFRFSVPPRRRLAVAALCAALGGCAVGPDYQRPAIDVGAAYKE FT AAAPQPGWTPAQPSDESARGQWWQVYGDPVLDGLVQQLNQGNYSVAQAEANYRQAQALV FT RNARAGFFPTIGAGADVTRSGSGGGSGAGSNGSSVGNQYSLSGSVSWEVDVWGRVRREV FT ESSRAEAQASAADLAVTRLSAQAALVQNYLQLRVLDEQKRLLDATVLAYERSLRLTQNR FT YEAGVVGKSDVAVARTQLENTRAQSIDLDWQRGQFEHAIAVLMGQAPSRFALPAQPFAQ FT QLPDIPAGLPSQLLERRPDVAAAERRAAAANAQIGVAQAAWFPDLTLSASGGFRSGQFA FT EWLTAPARFWTLGPALAMTLFDGGARSARVEQARAAYDAQAAAYRQSVLTALREVEDYL FT VQLRVMEHEQQVQRNALESARESLRLARNQYEQGLIDYLSVAVLETTALNTERNAISLL FT GSRLNASVQLIAALGGGWQGLPAEAAASAAAEPSAP" FT misc_feature complement(187419..188012) FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein" FT misc_feature complement(188040..188645) FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein" FT misc_feature complement(188784..188870) FT /note="Signal peptide predicted for BP3812 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.987) with cleavage site FT probability 0.542 between residues 29 and 30" FT misc_feature complement(188793..188825) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(188876..191983) FT /transl_table=11 FT /locus_tag="BP3813" FT /product="AcrB/AcrD/AcrF family protein" FT /note="Similar to Escherichia coli hypothetical protein FT YegO SW:YEGO_ECOLI (P76399) (1025 aa) fasta scores: E(): 0, FT 60.8% id in 1023 aa, and to Pseudomonas aeruginosa probable FT RND efflux transporter PA2526 TR:Q9I0V7 (EMBL:AE004680) FT (1036 aa) fasta scores: E(): 0, 61.08% id in 1033 aa. FT Similar to BP3814, 50.193% identity (51.590% ungapped) in FT 1034 aa overlap" FT /db_xref="GOA:Q7VSV9" FT /db_xref="HSSP:1IWG" FT /db_xref="InterPro:IPR001036" FT /db_xref="UniProtKB/TrEMBL:Q7VSV9" FT /protein_id="CAE44068.1" FT /translation="MILSAPFIVRPVATTLLCLGVVLAGLLAYRLLPVAPLPQVDIPTI FT SVSASLPGASPETMASSVATPLERSLGSIAGVTEMTSRSSQGSTRITLQFDLSRDVDGA FT ARDVQAAINAARSLLPTSLRSNPTYHKANPSAAPIMTLAMTSATLGQGKLYDLASTIVA FT QKLAQVNGVGEVTVGGSSLPAVRVNLIPGALANRGVSLDEVRQALSSANANRPKGMVEN FT DQYHWQVMASDQLDRAEQYRPLIVAWRDGAAVRLSDVASVEDSVEDLYQTGFYNDRKAI FT LMIVRRQADANIIETVDAVRAQLPQLAALLPGDVDLTVAQDRTPSIRASLHEAELTLVI FT AVGLVVLVVLLFLRRLRAAFIPSVAVPVSLIGTFCVMYLCGYTLNTISLMALIVATGFV FT VDDAIVVLENIMRHIERGATPMRAALRGSREVGFTVLSMSLSLVAVFIPILLMGGVAGR FT LFREFAVTLSASILVSLVVSLTLTPMMCARLLRAEPAAPRPPGRIGRLWTRLYGGMQGG FT YERSLGWALAHARLMMLILAATIGLNVYLYMVVPKGFFPQQDTGQLLGFFRGDQGTSFQ FT ATVPKLEYFRKVILADPAVQSVTAYAGGRGGSNSSFMQIQLKPLEERGVSADTVINRLR FT GRLQNEPGARMFLVAQQDIHIGGRQSSGSYDYTLMSGDLALLREWMPRVQRAMAALPEI FT TDVDADVEDKGRQIDLVIDRDAATRLGVSMATISAVLNNSFSQRQVSVIYGPLNQYHVV FT MGVDPRFAQDIESLKQVHVIAADGQRVPLAAFAQLKVANAPLSVSHQGLFVADTISFSL FT SPGVSLDQATGAIDAAVARIGLPSDQIQAGFQGTAAELQKTLARQPWLILAALVTMYIV FT LGILYESLVHPLTILSTLPSAGIGALLALMLLGHEFTLIALIGVFLLIGIVKKNAIMMV FT DFALEAERRDGLDARAAILRACLTRFRPIMMTTMAAIFGALPLMLASGPGVEMRRPLGI FT TIVGGLVLSQILTLYTTPVVYLYLDRFRLWAARRRAARSAPDPTRP" FT misc_feature complement(188942..191977) FT /note="HMMPfam hit to PF00873, AcrB/AcrD/AcrF family" FT misc_feature complement(join(188945..189010,189041..189106, FT 189218..189283,189344..189409,190346..190411, FT 190529..190594,190616..190681,190838..190903, FT 190925..190975,191897..191962)) FT /note="10 probable transmembrane helices predicted for FT BP3813 by TMHMM2.0 at aa 7-29, 336-353, 360-382, 434-456, FT 463-485, 524-546, 858-880, 900-922, 959-981 and 991-1013" FT CDS complement(191980..195048) FT /transl_table=11 FT /locus_tag="BP3814" FT /product="AcrB/AcrD/AcrF family protein" FT /note="Similar to Pseudomonas aeruginosa probable RND FT efflux transporter PA1436 TR:Q9I3R1 (EMBL:AE004573) (1036 FT aa) fasta scores: E(): 1.2e-171, 50.49% id in 1016 aa, and FT to Rhizobium loti RND efflux transporter MLL5779 TR:Q98B06 FT (EMBL:AP003007) (1038 aa) fasta scores: E(): 2.3e-168, FT 52.25% id in 1020 aa. Similar to BP3813, 50.193% identity FT (51.590% ungapped) in 1034 aa overlap" FT /db_xref="GOA:Q7VSV8" FT /db_xref="HSSP:1IWG" FT /db_xref="InterPro:IPR001036" FT /db_xref="UniProtKB/TrEMBL:Q7VSV8" FT /protein_id="CAE44069.1" FT /translation="MSPSRLFILRPVATTLSMVAILIAGLIAYRLLPVSALPEVDYPTI FT QVVTLYPGASPDVMTSLVTSPLERQFGQMPGLNQMSSTSSGGASVITLQFSLDLSLDVA FT EQQVQAAINAASNLLPNDLPVPPTYNKVNPADAAVLTLAVTSPTMPLPQVRDLVDTRMA FT QRLSQIPGVGLVSVAGGQRPAVRVQVNPQALASAGLSLADLRTAVVGANVNQPKGNLDG FT PIRSTTINANDQLKSPTDYNDLIIAYRNDAPLRLSDVARAVQGAEDIRQAAWVGDKPAI FT LLNVQRQPGANVIDVVDCIHALLPQLRAAMPATLDLVVVADRTQTIRDSVADVQFEMLL FT AVGLVVLVTFLFLRSLTATVIPSVVVPLSLIGTFGIMYLAGFSINNLTLMALTIATGFV FT VDDAIVMIENIARHLEEGETPLQAALKGAAQIGFTLISLTFSLIAVLIPLLFMTEVVGR FT LFREFAVTLAVAILISLVVSLTLTPMMCARLLRPESEQRHGRFHQATGALIDRVIAGYD FT RMLLVALGTFALTVLLYIVVPKGFFPQQDSGLIQAITQAPQTISFAAMSQRQQEAARII FT VQDPDVAAVSSFIGVDGSNPTLNNGRMQIALKPQSERSGDLKTVMARLQDALHGGTDLG FT LTVYMQPVQDLTIEDRVSRTQYQMTLSNPDLAVLSEWAPRLVERLRQVPQLADVTYDLQ FT DQGLQTWVEIDRDAASRLGITAAVIDEALYDAFGQRLISTVFTQSNQYRVVLEVLPQFR FT QSPQSLDHIHVPTASGAQVPLSSVARISEGRTVLAVNRLDQFPMTTVSFNLAPGASLSG FT AVEAISAVQAEIGLPLAIDTRFQGAALAFQNSLDSTLWLILAAVVTMYIVLGILYESYI FT HPITILSTLPSAGVGALLALLISGTDLDMIGIIGIILLIGIVKKNAIMMIDFALEAERK FT RGLAPREAIHEAALLRFRPILMTTLAALFGALPLMLSTGTGAELRQPLGLVMVGGLLVS FT QVLTLFTTPVIYLMFDRLARRRGGAGAAARQAP" FT misc_feature complement(192034..195042) FT /note="HMMPfam hit to PF00873, AcrB/AcrD/AcrF family" FT misc_feature complement(join(192040..192105,192151..192216, FT 192310..192375,192436..192501,193423..193488, FT 193594..193659,193696..193761,193903..193968, FT 193990..194055,194962..195027)) FT /note="10 probable transmembrane helices predicted for FT BP3814 by TMHMM2.0 at aa 7-29, 331-353, 360-382, 429-451, FT 463-485, 520-542, 849-871, 891-913, 944-966 and 981-1003" FT CDS complement(195045..196295) FT /transl_table=11 FT /locus_tag="BP3815" FT /product="HlyD family secretion protein" FT /note="Similar to Pseudomonas aeruginosa probable RND FT efflux membrane fusion protein precursor PA2528 TR:Q9I0V5 FT (EMBL:AE004680) (426 aa) fasta scores: E(): 1.6e-64, 51.74% FT id in 402 aa, and to Burkholderia solanacearum putative FT resistance transmembrane protein RSP1197 TR:CAD18348 FT (EMBL:AL646083) (449 aa) fasta scores: E(): 1.6e-69, 51.71% FT id in 408 aa" FT /db_xref="GOA:Q7VSV7" FT /db_xref="InterPro:IPR006143" FT /db_xref="UniProtKB/TrEMBL:Q7VSV7" FT /protein_id="CAE44070.1" FT /translation="MPESRSVAPPARQGRRRLIAAAIAVLAVLALAWWLWPKDTGGQQG FT RPGGRGAMRGGPASMMNMAVPVRVGEARTQDIQIVLRALGTATAYNTVTVRSRVDGELV FT KVAFQEGQHVKAGDLLAQVDPRPFEVALAQAQGQQQQNLAQLENARRDLQRYQTLYKQD FT SIARQQLDTQAALVRQYEGTIKSDRAAVDSARLQLDFSRITAPIAGRLGLRQVDQGNLI FT SSGDANGLVVITQTQPIAVVFTLPETQLPEVLAQLRAGRQLPVEAYDRADTRRIASGQL FT ETVDNQIDVATGTVKLKARFDNAEEALFPNQFVNVRLYVETRSGMTAIPNAAVQQGSAG FT AFVFLAQPDDTVSVRQVKLGAINGDWVAVNEGLQPGDKVVVEGMDRLRAGARIEIVTGT FT TPEAAAPVNTGAPRRTP" FT misc_feature complement(195153..196025) FT /note="HMMPfam hit to PF00529, HlyD family secretion FT protein" FT misc_feature complement(196185..196241) FT /note="1 probable transmembrane helix predicted for BP3815 FT by TMHMM2.0 at aa 54-73" FT CDS complement(196476..197237) FT /transl_table=11 FT /locus_tag="BP3816" FT /product="conserved hypothetical protein" FT /note="Similar to Vibrio cholerae hypothetical protein FT VC2428 TR:Q9KPE2 (EMBL:AE004312) (246 aa) fasta scores: FT E(): 1.1e-22, 31.3% id in 246 aa, and to Escherichia coli FT hypothetical protein YacF SW:YACF_ECOLI (P36680) (247 aa) FT fasta scores: E(): 1.7e-20, 31.72% id in 249 aa" FT /db_xref="InterPro:IPR009777" FT /db_xref="UniProtKB/Swiss-Prot:P67690" FT /protein_id="CAE44071.1" FT /translation="MASVILYEYPFNERIRAYLRLEYLFDRLFFFAREGDARLHQIAVS FT SLFDLLDASERTDIKGAVLQDLERQRMALVGLRDHPGVAQDALEAMLRDMERVVAALAA FT QGKTGQALRENEWLVSLRGRLAVPGGATQVDMPSYHAWQNKPESVRCADLQSWLAPLLP FT LHEGLSMALRLLRESGRRADIAAEQGGYQQMLAGKIYHLLRVWVDPSLGVFPEISANKY FT MVWIRFSTQDGEVKPQQVSRDVAFQMSLCSS" FT misc_feature complement(196914..196937) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(197270..197914) FT /transl_table=11 FT /gene="coaE" FT /locus_tag="BP3817" FT /product="putative dephospho-CoA kinase" FT /EC_number="2.7.1.24" FT /note="Similar to Escherichia coli dephospho-CoA kinase FT CoaE SW:COAE_ECOLI (P36679) (206 aa) fasta scores: E(): FT 1.8e-26, 45.45% id in 198 aa, and to Aeromonas hydrophila FT dephospho-CoA kinase CoaE SW:COAE_AERHY (P56186) (204 aa) FT fasta scores: E(): 2.6e-28, 47.08% id in 206 aa" FT /db_xref="GOA:Q7VSV5" FT /db_xref="InterPro:IPR001977" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSV5" FT /protein_id="CAE44072.1" FT /translation="MYKIGLTGGIGSGKSRVADMLAEWGASVIDADEISHALTAPGGAA FT MPAIAREFGPQAVAADGALDRAWMRDLVFREPTARGRLEALLHPLIGLHTEQAAAQARG FT LYLVFVVPLLVESGRWRGRVDRICVVDCDPATQIARVQKRSGLTEPAIRRIMAAQAARA FT TRLEAADDVIVNDGATSPDTLRARARTLHDRWLALAGAASQPGGKAAGTPE" FT misc_feature complement(197372..197911) FT /note="HMMPfam hit to PF01121, Dephospho-CoA kinase" FT misc_feature complement(197870..197893) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(197923..198903) FT /transl_table=11 FT /locus_tag="BP3818" FT /product="type 4 prepilin-like proteins leader peptide FT processing enzyme" FT /note="Similar to Pseudomonas aeruginosa type 4 FT prepilin-like proteins leader peptide processing enzyme FT [includes: prepilin peptidase; and N-methyltransferase] FT PilD SW:LEP4_PSEAE (P22610) (290 aa) fasta scores: E(): FT 1.3e-38, 46.57% id in 277 aa, and to Burkholderia FT pseudomallei type 4 prepilin-like proteins leader peptide FT processing enzyme GspO SW:LEP4_BURPS (Q9ZF70) (275 aa) FT fasta scores: E(): 2.5e-42, 50.36% id in 272 aa" FT /db_xref="GOA:Q7VSV4" FT /db_xref="InterPro:IPR010627" FT /db_xref="UniProtKB/TrEMBL:Q7VSV4" FT /protein_id="CAE44073.1" FT /translation="MQIGARRNNAACGIALPPGPGGPSGPVRAGCPALPLLVLPFRVPP FT GAMWHVFPLDPALNVVLAALLGLVAGSWLSVVAHRLPRMMEREWRTAMREEDGGAESGY FT GLWRPAWHCPSCQAALRGWRAVPLAGWLLQRGRCGHCGQPIGLRYPMLELAAAVLFAAC FT AWRFGPTPMALAAMGLTGALLALAWIDLEHSLLPDAVTLPLIWAGLLVNLDGALAPLPL FT AVLGAVAGYLFLWVIFHFFRLLTGRDGMGHGDFKLMAALGAWLGLGALPWLLLGASLAG FT VLVGWSLRLAGRVGRGQPLPFGPYLALGGILMLLAAGRPAWLQFY" FT misc_feature complement(join(197935..198000,198046..198111, FT 198172..198237,198337..198402,198670..198735)) FT /note="5 probable transmembrane helices predicted for FT BP3818 by TMHMM2.0 at aa 56-78, 167-189, 222-244, 264-286 FT and 301-323" FT misc_feature complement(197959..198768) FT /note="HMMPfam hit to PF01478, Type III leader peptidase FT family" FT CDS 199003..199746 FT /transl_table=11 FT /locus_tag="BP3819" FT /product="hypothetical protein" FT /note="Poor database matches. Weakly similar to Vibrio FT cholerae lipoprotein VC1962 TR:Q9KQN6 (EMBL:AE004271) (163 FT aa) fasta scores: E(): 0.065, 28.36% id in 141 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VSV3" FT /protein_id="CAE44074.1" FT /translation="MSAPLDTPALRLNTRFATGIVLAGTLALAGCAQQRSAGYYDPPGA FT STITDAQYQGQAAGYRTVVHAPSQLQIELKPNQPARQQNAQAQAGQQSTEDGTAVPEGQ FT AAPQPQPETASPGAQAIIPQAQTYQGTFPCFAAGLACEAQRVTLTLAPNGRWRSRTNYL FT DKQPQASAPVAEQGCWDATQERPPRVLLLDGSGNMRAELVMTANNVLRVRSVGGRTPNL FT NYNLTRQPDLDAIAELDKQAAPKCP" FT CDS complement(199829..200176) FT /transl_table=11 FT /locus_tag="BP3820" FT /product="putative regulatory protein" FT /note="Similar to the C-terminal regions of Salmonella FT typhimurium transcriptional regulatory protein UhpA FT SW:UHPA_SALTY (P27667) (196 aa) fasta scores: E(): 2.6e-05, FT 47.29% id in 74 aa, and Escherichia coli transcriptional FT regulatory protein UhpA SW:UHPA_ECOLI (P10940) (196 aa) FT fasta scores: E(): 6.3e-05, 45.94% id in 74 aa" FT /db_xref="GOA:Q7VSV2" FT /db_xref="HSSP:1FSE" FT /db_xref="InterPro:IPR000792" FT /db_xref="UniProtKB/TrEMBL:Q7VSV2" FT /protein_id="CAE44075.1" FT /translation="MLPTPGNASSAQPALPVVSICHPIAPSVGGRAEARPPAALTARER FT QVAAYLAAGKANKVIAIDLGISRRTAEAHRARIFRKLGVRNAFELACRMCPHRRAATSM FT AGQGATPAGES" FT misc_feature complement(199871..200068) FT /note="HMMPfam hit to PF00196, Bacterial regulatory FT proteins, luxR family" FT CDS complement(200274..201116) FT /transl_table=11 FT /gene="panC" FT /locus_tag="BP3821" FT /product="pantoate--beta-alanine ligase" FT /EC_number="6.3.2.1" FT /note="Similar to Escherichia coli pantoate--beta-alanine FT ligase PanC or b0133 SWALL:PANC_ECOLI (SWALL:P31663) (283 FT aa) fasta scores: E(): 4.7e-38, 44.91% id in 285 aa, and to FT Neisseria meningitidis pantoate--beta-alanine ligase FT NMA1089 SW:PANC_NEIMA (P57035) (278 aa) fasta scores: E(): FT 8.4e-54, 56.42% id in 280 aa" FT /db_xref="GOA:Q7VSV1" FT /db_xref="HSSP:1IHO" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSV1" FT /protein_id="CAE44076.1" FT /translation="MKVVHTIQDLRDHLRGQNRVAFVPTMGNLHEGHLALMKLARQHGD FT PVVTSIFVNRLQFGPNEDFDRYPRTLPDDVAKMERDRDVYLVFAPDEREMYPEPQNYRV FT LPPDDLGDILEGEFRPGFFTGVCTVVMKLLACVQPRVAVFGKKDYQQLMVVRNMCRQLQ FT LPVEILAHETVRADDGLALSSRNRYLSEAERAEAPVLYETLRGIAQRRAGGEQDPAALE FT RVAAQALADRGWKVDYVAVRRQRDLKAPDVAEMSAGEPLVALAAAKLGATRLIDNLEF" FT misc_feature complement(200277..201116) FT /note="HMMPfam hit to PF02569, Pantoate-beta-alanine FT ligase" FT CDS complement(201161..202048) FT /transl_table=11 FT /locus_tag="BP3822" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein NMB1504 TR:Q9JYN0 (EMBL:AE002500) (284 aa) fasta FT scores: E(): 5.5e-48, 54.41% id in 272 aa, and to Xylella FT fastidiosa hypothetical protein XF2451 TR:Q9PAP4 FT (EMBL:AE004054) (338 aa) fasta scores: E(): 1.1e-45, 50.53% FT id in 283 aa. Possible alternative translational start FT site" FT /db_xref="GOA:Q7VSV0" FT /db_xref="InterPro:IPR003768" FT /db_xref="UniProtKB/TrEMBL:Q7VSV0" FT /protein_id="CAE44077.1" FT /translation="MAHNASISGDDLAALVEPQVDSTPDVVDSVAFARLYGEPLFQLPT FT DLYIPPDALEVFLEAFEGPLDLLLYLIRKQNFNVLDIPMADVTRQYLSYVEQIRVHNLE FT LAAEYLLMAAMLIEIKSRMLLPVKKSDTGEEPEDPRAELVRRLLEYEQMKLAAQKLDAL FT PQLGRDFVRSQAVAEISVERMLPEVSVDDLRAAWADIMKRARLNQHHHITREQLSVRDH FT MTHILRRLNDVRFMEFGELFLERINEGAPVAVVVVHFIAMLELARESLLDITQAEPYAP FT IYVRLAYASVAAAA" FT misc_feature complement(201188..201838) FT /note="HMMPfam hit to PF02616, Uncharacterized ACR, FT COG1354" FT CDS complement(202075..202263) FT /transl_table=11 FT /locus_tag="BP3823" FT /product="conserved hypothetical protein" FT /note="Similar to Burkholderia solanacearum conserved FT hypothetical protein RSC2385 TR:CAD16092 (EMBL:AL646069) FT (62 aa) fasta scores: E(): 3.7e-09, 58.33% id in 60 aa, and FT to Neisseria meningitidis hypothetical protein NMA1654 FT TR:Q9JTS3 (EMBL:AL162756) (61 aa) fasta scores: E(): 6e-06, FT 44.06% id in 59 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VSU9" FT /protein_id="CAE44078.1" FT /translation="MAKNYESEITRFLKEYKTAHPDTEQRQREGRARLWDKAQNTELLE FT GFRAARVPQKPYVYQAD" FT CDS 202361..203818 FT /transl_table=11 FT /locus_tag="BP3824" FT /product="putative membrane protein" FT /note="Similar to Escherichia coli multidrug resistance FT protein B EmrB SW:EMRB_ECOLI (P27304) (512 aa) fasta FT scores: E(): 1.5e-26, 28.46% id in 411 aa, and to Rhizobium FT loti probable transporter MLL1728 TR:Q98JY3 (EMBL:AP002998) FT (477 aa) fasta scores: E(): 1.7e-75, 46.96% id in 477 aa. FT Possible alternative translational start site" FT /db_xref="GOA:Q7VSU8" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7VSU8" FT /protein_id="CAE44079.1" FT /translation="MSADPATAAAPPPLANPDAARAARMIPFIVGCALFMQMLDSTVVA FT TALPAMAAALGSTPVRLNVAITSYLLAVAVFVPISGWAADRFGARRVLIAAITLFTLSS FT VGCALSQNLGQLVVARIVQGMAGAMMVPVGRIILLRTVPKQDLLKAMSFLSIPALLGPV FT IGPPVGGFMVTYMSWHWIFLINIPIGILGIALVLRFVSEIREENAPRLDLPGFLLSGIC FT LAALVSAFEALGHGLLPPLELGALIAAGLLCGVLYVWHSRRVEHPILDLSLLRTPTFAI FT SVLGDNLCRFAVGAVPFLLAMLLQVGFGLSPFAAGMITFASAAGALLMKFVATPIVTRY FT GFRRVLTINAILTGLFIVACAAFTPVTPAWAMIAVLLAGGFFRSLQFTAVNTLTYADIG FT PERMSRASSFAAMAQQLGISLGVGVAAVTLNVSMAARGAASLTIGDVVVGFMVVGALCM FT LSVLSFRRLAPSAGAQLQNVKVPRDGK" FT misc_feature join(202433..202501,202544..202612,202631..202699, FT 202709..202777,202814..202882,202892..202960, FT 202997..203056,203069..203137,203195..203263, FT 203291..203359,203393..203461,203477..203545, FT 203606..203674,203684..203752) FT /note="14 probable transmembrane helices predicted for FT BP3824 by TMHMM2.0 at aa 25-47, 62-84, 91-113, 117-139, FT 152-174, 178-200, 213-232, 237-259, 279-301, 311-333, FT 345-367, 373-395, 416-438 and 442-464" FT CDS 203805..205331 FT /transl_table=11 FT /gene="glpK" FT /locus_tag="BP3825" FT /product="glycerol kinase" FT /EC_number="2.7.1.30" FT /note="Similar to Escherichia coli glycerol kinase GlpK FT SW:GLPK_ECOLI (P08859) (501 aa) fasta scores: E(): FT 1.2e-105, 55% id in 500 aa, and to Deinococcus radiodurans FT glycerol kinase DR1928 TR:Q9RT38 (EMBL:AE002031) (501 aa) FT fasta scores: E(): 6.2e-125, 61.2% id in 500 aa" FT /db_xref="GOA:Q7VSU7" FT /db_xref="InterPro:IPR005999" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSU7" FT /protein_id="CAE44080.1" FT /translation="MTANEFILALDQGTTSSRAIVFDRAGTVRGMGQREFRQHYPRPGW FT VEHDAGEIWQSQLEVAREALRNAGASAADLAALGITNQRETTLIWERATGRPLARAIVW FT QDRRTAAMCEKLLHDGHGRMLQERTGLVVDAYFSGTKLAWLLDHVPGARKMAERGELAF FT GTMDTWLVWQLTGGAVHSTDPSNASRTMLFDLHAQDWSDDILALLNIPRGILPRIAPSS FT ARIGETLPEWLGGSIPIAGVAGDQQAATFGQACFTPGMAKNTYGTGCFMLMNVGDAPVA FT SRHNLLSTVGWSLPAGNATHATYMVEGGVFMAGAAVQWLRDGLGIIQRSADIEALAASV FT ADTDDVFMVPAFAGLGAPHWDPYARGTLVGMTRGTTRAHIARATLESIALQSAELLSCM FT NADSGIPLSELRVDGSAARNDLLMQMQADLLGVPVVRPRVPESTALGAAGLAGLAVGFW FT SSLDEFGAQWQAERTFEPAWPADVREARMQRWRQAVELSKGWSRPAAGHA" FT misc_feature 204051..205148 FT /note="HMMPfam hit to PF00370, FGGY family of carbohydrate FT kinases, N-terminal domain" FT misc_feature 204210..204248 FT /note="ScanRegExp hit to PS00933, FGGY family of FT carbohydrate kinases signature 1. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 204900..204962 FT /note="ScanRegExp hit to PS00445, FGGY family of FT carbohydrate kinases signature 2." FT CDS complement(205350..205817) FT /transl_table=11 FT /locus_tag="BP3826" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PA0661 TR:Q9I5R0 (EMBL:AE004501) (140 aa) fasta FT scores: E(): 1.7e-05, 31.46% id in 143 aa, and to Rhizobium FT loti hypothetical protein MLL4486 TR:Q98DY7 (EMBL:AP003004) FT (162 aa) fasta scores: E(): 2.2e-05, 31.91% id in 141 aa. FT Possible alternative translational start site" FT /db_xref="InterPro:IPR005265" FT /db_xref="UniProtKB/TrEMBL:Q7VSU6" FT /protein_id="CAE44081.1" FT /translation="MPEGRPGARGPRPSYPMLYSWIKIVHVAAMAAWTLGLLVLSSVTA FT FPARQGQGPGRFAQRLARCNRWLISPAMLLGVGCGLYLASMAGWFGQPWLDVKLALVGL FT LVVLHGAQSLVLRRQLASPAAGAPAWLAAGGAAVFFASAAIVLLAVVKPSL" FT misc_feature complement(join(205365..205430,205470..205520, FT 205551..205616,205680..205745)) FT /note="4 probable transmembrane helices predicted for FT BP3826 by TMHMM2.0 at aa 24-46, 67-89, 99-116 and 129-151" FT CDS complement(205817..206839) FT /transl_table=11 FT /locus_tag="BP3827" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT SMA1927 TR:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: FT E(): 1.7e-48, 44.61% id in 334 aa, and to Agrobacterium FT tumefaciens AGR_L_312p TR:AAK88723 (EMBL:AE008213) (329 aa) FT fasta scores: E(): 2.2e-45, 43.28% id in 335 aa" FT /db_xref="GOA:Q7VSU5" FT /db_xref="InterPro:IPR006311" FT /db_xref="UniProtKB/TrEMBL:Q7VSU5" FT /protein_id="CAE44082.1" FT /translation="MSRSHSFVSVTRRALLGGALAVAAGLSWTAPAVAQGDAFPAKPLR FT FVVPYPPGGPLDSMARLLAEKVRESLGQPIIVENRSGAGGNIGADLVAKAAPDGYTLVM FT GAVATHAINPWLFANLPYDPVKDFAPVTIVASVPNVLVMNLEFAEKNNIQNLGDLLAYA FT KKNPGRLNYGSGGNGSAGHLSGELLKARAGIAAEHIPYQGAAPAQLALLSGQSDFMFDN FT LAAAAPLIKDGKVKALAVTTAKRSSLLADVPTVEEAGVKGFDLGTWFGVFTTGGTPADV FT VAKLNKAYADAMRLPDVRQRLLTMGSEAEPMTADAFAAFVKQEMAKYQEIVKISGASLN FT " FT misc_feature complement(206738..206839) FT /note="Signal peptide predicted for BP3827 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.996) with cleavage site FT probability 0.880 between residues 34 and 35" FT CDS complement(206960..207700) FT /transl_table=11 FT /locus_tag="BP3828" FT /product="putative amino acid ABC transporter ATP-binding FT protein" FT /note="Similar to Rhizobium leguminosarum general L-amino FT acid transport ATP-binding protein AapP SW:AAPP_RHILV FT (Q52815) (257 aa) fasta scores: E(): 1.7e-67, 77.95% id in FT 245 aa, and to Pseudomonas marginalis pv. alfalfae FT hypothetical protein TR:O68330 (EMBL:AF033673) (254 aa) FT fasta scores: E(): 2.9e-69, 80.32% id in 244 aa.. Similar FT to several B. pertussis CDSs: BP1181, BP0054, BP1534, FT BP1855, BP1575, BP1362, P0768, and BP1510." FT /db_xref="GOA:Q7VSU4" FT /db_xref="HSSP:1B0U" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VSU4" FT /protein_id="CAE44083.1" FT /translation="MTDAIIRMQDVNKWYGQFHVLRNINLDVAPGERIVVCGPSGSGKS FT TMIRCINRLEEHQQGHIIVDGTELTNDLKHIEAIRRDVGMVFQHFNLFPHLTVLENLTL FT GPTWVLKKSRAEAEATAMKYLERVRIPEQATKYPGQLSGGQQQRVAIARSLCMNPKIML FT FDEPTSALDPEMVKEVLDVMVRLAQESGMTMLCVTHEMGFARKVANRVIFMDRGEIIEQ FT NTPDEFFDNPQNERTKLFLSQILH" FT misc_feature complement(207050..207610) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(207236..207280) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(207566..207589) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(207755..208855) FT /transl_table=11 FT /locus_tag="BP3829" FT /product="putative amino acid ABC transporter permease FT protein" FT /note="Similar to Rhizobium leguminosarum general L-amino FT acid transport system permease protein AapM SW:AAPM_RHILV FT (Q52814) (384 aa) fasta scores: E(): 1.8e-59, 49.32% id in FT 369 aa, and to Pseudomonas marginalis pv. alfalfae FT hypothetical protein TR:O68329 (EMBL:AF033673) (365 aa) FT fasta scores: E(): 1.7e-71, 53.26% id in 368 aa" FT /db_xref="GOA:Q7VSU3" FT /db_xref="InterPro:IPR010065" FT /db_xref="UniProtKB/TrEMBL:Q7VSU3" FT /protein_id="CAE44084.1" FT /translation="MSSATHTPGEALPPPSGHVGVWHWLRTRLFSSPLSILATVLLAWL FT VLMAVPALVEWALIGANFTATSAQECRQSEGACWAFIVEKHRLILFGTYPYDEQWRPLL FT ATIILIAVIVCSGMRRFWKPSLALVWIVGLSAVAVLMWGGVLGLTYVENARWGGLPLTL FT ILATFGIALAFPFGVLLALGRRSRMPAIKALCVVYIELIRGVPLISLLFMSSVMLPLFL FT PEGFSIDKLLRAQIAIIMFAAAYIAETVRGGLQAIPKGQYEGADSLGLTYWQQMRKVIL FT PQALKIVIPPLVSIFIALFKDTSLVVIIGIFDLTLAAKAALSDAAWRGFGVEAYVFIAL FT IYFVFCFSMSKYSQALEHRLATGHQR" FT misc_feature complement(join(207815..207880,207926..207991, FT 208094..208159,208205..208270,208307..208372, FT 208403..208468,208490..208555,208682..208747)) FT /note="8 probable transmembrane helices predicted for FT BP3829 by TMHMM2.0 at aa 36-58, 100-122, 129-151, 161-183, FT 195-217, 232-254, 288-310 and 325-347" FT misc_feature complement(207887..208099) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature complement(208010..208096) FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign. Confirmed by FT InterPro eMOTIF pattern match." FT CDS complement(208857..210047) FT /transl_table=11 FT /locus_tag="BP3830" FT /product="putative amino acid ABC transporter permease FT protein" FT /note="Similar to Rhizobium leguminosarum general L-amino FT acid transport system permease protein AapQ SW:AAPQ_RHILV FT (Q52813) (400 aa) fasta scores: E(): 5.1e-67, 50.52% id in FT 378 aa, and to Vibrio cholerae amino acid ABC transporter, FT permease protein VC1361 TR:Q9KS98 (EMBL:AE004215) (401 aa) FT fasta scores: E(): 9.4e-70, 49.75% id in 402 aa" FT /db_xref="GOA:Q7VSU2" FT /db_xref="InterPro:IPR010065" FT /db_xref="UniProtKB/TrEMBL:Q7VSU2" FT /protein_id="CAE44085.1" FT /translation="MTTTNRNAPIPAPRRRLNWNDPGLRAVVYQFVALVVVALVAWFLV FT SNTLHNLSVRNIATGFGFLDREAGFAIGETPIAYSPSDTYGRAILVGVLNTLRVAVIGI FT VLATLLGTLIGIGRLSKNWLVARLTSIYVEVMRNVPLLLQLFFWYALITENMPGPRQAH FT NPLPGVFISNRGVRVPSLEGNALDWMLGGLALAIVAIIVLGHWGRKRQEATGRIFPLGR FT AAIALLIGLPIVGWLASGASLALDMPALKGFNFQGGLNMSPEFAALLAGLVIYTSAFVA FT EVVRSGIQAVNQGQWEAAGSLGLRRAQVLRLVVLPQALRVIIPPMTSQYLNLTKNSSLA FT VAIGYPDIVSVVNTTLNQTGQAIEGILIIMGAYLTVSLTISIFMNWYNKRIALVER" FT misc_feature complement(join(208887..208952,209196..209252, FT 209313..209378,209427..209492,209592..209657, FT 209697..209762,209913..209978)) FT /note="7 probable transmembrane helices predicted for FT BP3830 by TMHMM2.0 at aa 23-45, 95-117, 130-152, 185-207, FT 223-245, 265-284 and 365-387" FT misc_feature complement(208977..209189) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature complement(209100..209186) FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign. Confirmed by FT InterPro eMOTIF pattern match." FT CDS complement(210167..211183) FT /transl_table=11 FT /locus_tag="BP3831" FT /product="putative ABC transporter periplasmic amino FT acid-binding protein" FT /note="Similar to Rhizobium leguminosarum general L-amino FT acid-binding periplasmic protein precursor AapJ FT SW:AAPJ_RHILV (Q52812) (341 aa) fasta scores: E(): 1.1e-74, FT 55.75% id in 339 aa, and to Vibrio cholerae amino acid ABC FT transporter periplasmic amino acid-binding protein VC1362 FT TR:Q9KS97 (EMBL:AE004216) (342 aa) fasta scores: E(): FT 4.7e-79, 58.63% id in 336 aa. Similar to BP1529, 67.059% FT identity (67.456% ungapped) in 340 aa overlap, and to FT BP0558, 66.471% identity (67.262% ungapped) in 340 aa FT overlap" FT /db_xref="GOA:Q7VSU1" FT /db_xref="InterPro:IPR018313" FT /db_xref="UniProtKB/TrEMBL:Q7VSU1" FT /protein_id="CAE44086.1" FT /translation="MKMLKLAAAGAALFAAGSVAHAGATFDNVKKKGFVQCGVSTGIPG FT FSIADSKGEWKGLDVDMCRAIAATMFGDASKFKVTPLNTQQRFTALQSGEVDVLTRNTT FT VTLTRDTTLGLIGVGVNYYDSQGVMVSKELGVKSAKELNGATVCVQPGTTTELNLADWF FT RGNKIEFKPVVIDKYDEIVRAFSAGRCDAFTTDKSQLASTRTTLEKPDNYVILPEDFSK FT EPLGPMVRQGDEQWFNVVRWSLNAMLEAEEYGITSKNVDEMAKSSNPNIQRILGVTPGM FT GKNLGVDDKWAFNIIKQVGNYGESFEATLGKSSAMKLERGLNASYKQGGLMYGWPVR" FT misc_feature complement(210248..211081) FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3" FT misc_feature complement(210974..211015) FT /note="ScanRegExp hit to PS01039, Bacterial extracellular FT solute-binding proteins, family 3 signature." FT misc_feature complement(211118..211183) FT /note="Signal peptide predicted for BP3831 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.971 between residues 22 and 23" FT CDS 211502..212173 FT /transl_table=11 FT /gene="ftsE" FT /locus_tag="BP3832" FT /product="cell division ATP-binding protein" FT /note="Similar to Escherichia coli cell division FT ATP-binding protein FtsE SW:FTSE_ECOLI (P10115) (222 aa) FT fasta scores: E(): 9e-36, 50.9% id in 220 aa, and to FT Neisseria meningitidis ABC transporter ATP-binding protein FT NMA0254 TR:Q9JWT1 (EMBL:AL162752) (216 aa) fasta scores: FT E(): 1.6e-34, 48.83% id in 215 aa" FT /db_xref="GOA:Q7VSU0" FT /db_xref="HSSP:1F3O" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VSU0" FT /protein_id="CAE44087.1" FT /translation="MIEFQHVFKSYGRGRNILADINFRISAGEFVFVSGPSGAGKSTLL FT KLIGGLEPPSRGSIQVNNQRLDRLPSRARPYLRRAVGVILQDTHLLYDRSAFQNVMLPL FT AVTGQAPDSAAARARAALDKVGLAGKEDLNPIELSGGEQQRLAIARAIVNRPAILIADE FT PTANLDHDNAQRIMNVFRDFNRVGVTTLIASHDQDLMARYATRTLSIEHGRFHDTHGGQ FT A" FT misc_feature 211583..212140 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 211604..211627 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 211913..211957 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 212170..213078 FT /transl_table=11 FT /locus_tag="BP3833" FT /product="putative permease protein" FT /note="Similar to Neisseria gonorrhoeae putative cell FT division protein FtsX SW:FTSX_NEIGO (P95357) (305 aa) fasta FT scores: E(): 1e-20, 32.31% id in 294 aa, and to the FT C-terminal region of Escherichia coli cell division protein FT FtsX SW:FTSX_ECOLI (P10122) (352 aa) fasta scores: E(): FT 9.4e-18, 30.53% id in 298 aa" FT /db_xref="GOA:Q7VST9" FT /db_xref="InterPro:IPR003838" FT /db_xref="UniProtKB/TrEMBL:Q7VST9" FT /protein_id="CAE44088.1" FT /translation="MKAWLRQHRYALAITLRRLAAQPFSSLANLLVMALALALPLLGSA FT ILVSVQPLARQVSVTPELTVFMQTQAPATAAGAVAERIGRDYASQIAAVRVVPRDQALA FT ALRDNPAWEQALAVLPGNPLPDAVVVTLADGENLAGRAGALAQDWGKWDGVDQVQLDSA FT WVQRLEALLRFARIGLAFLAACVAVVVLATVFNTVRMQAMTQREEIAVARLVGATESFV FT RRPFLYQGALTGAVSALIAIGAAAMALTPLNDALLGLARSYGAEFALHLPGLPVLAVAV FT IAAGVLGALSARWSVTRSTRF" FT misc_feature join(212245..212313,212689..212757,212845..212913, FT 212971..213039) FT /note="4 probable transmembrane helices predicted for FT BP3833 by TMHMM2.0 at aa 26-48, 174-196, 226-248 and FT 268-290" FT misc_feature 212371..213069 FT /note="HMMPfam hit to PF02687, Predicted permease" FT CDS 213290..213937 FT /transl_table=11 FT /locus_tag="BP3834" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PA0174 TR:Q9I6V8 (EMBL:AE004455) (200 aa) fasta FT scores: E(): 3.1e-29, 48.14% id in 189 aa, and to FT Caulobacter crescentus putative chemotaxis protein CheD FT TR:O87719 (EMBL:AJ006687) (187 aa) fasta scores: E(): FT 5.3e-24, 47.53% id in 162 aa" FT /db_xref="GOA:Q7VST8" FT /db_xref="InterPro:IPR005659" FT /db_xref="UniProtKB/Swiss-Prot:Q7VST8" FT /protein_id="CAE44089.1" FT /translation="MPARLDARATRRYFDNAFNSPAVKILPNEYYVTNGEDVMLSTVLG FT SCVAACIHDPVIGVGGMNHFMLPEGDIHSPASATMRYGAFAMEVLINELLKAGAVRERL FT EAKVFGGGAVLSAMQLMNIGERNGQFVLNYLKTEGIPVRAQDLGDVHARRINYFPRDGR FT VMVRKMAPHHQKAEALIAQREAAAAQTVQAETRAAPRVERFDTPSRRDPVGA" FT CDS complement(join(214028..215443,215448..217640)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3835" FT /product="putative pyruvate ferredoxin/flavodoxin FT oxidoreductase (pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 731. The frameshift occurs within FT a dimeric tract of (GGGC)2. The sequence has been checked FT and believed to be correct. Similar to Burkholderia FT solanacearum probable oxidoreductase protein RSC3122 FT TR:CAD16831 (EMBL:AL646073) (1187 aa) fasta scores: E(): 0, FT 62.29% id in 1212 aa, and to Rhizobium loti MLR5175 protein FT MLR5175 TR:Q98CF1 (EMBL:AP003005) (1159 aa) fasta scores: FT E(): 4.4e-110, 51.14% id in 1183 aa. Also similar to FT BP2982, 48.699% identity (51.418% ungapped) in 1191 aa FT overlap." FT /db_xref="PSEUDO:CAE44090.1" FT misc_feature complement(214817..215383) FT /note="HMMPfam hit to PF01558, Pyruvate FT ferredoxin/flavodoxin oxidoreductase" FT variation complement(215444..215451) FT /note="(GGGC)2 in pertussis; (GGGC)1 in parapertussis and FT bronchiseptica" FT CDS 217789..218865 FT /transl_table=11 FT /gene="mutY" FT /gene_synonym="micA" FT /locus_tag="BP3836" FT /product="putative A/G-specific adenine glycosylase" FT /EC_number="3.2.2.-" FT /note="Similar to Escherichia coli A/G-specific adenine FT glycosylase MutY SW:MUTY_ECOLI (P17802) (350 aa) fasta FT scores: E(): 4.8e-56, 42.04% id in 352 aa, and to FT Pseudomonas aeruginosa A/G specific adenine glycosylase FT PA5147 TR:Q9HU37 (EMBL:AE004927) (355 aa) fasta scores: FT E(): 6.3e-63, 49.56% id in 347 aa" FT /db_xref="GOA:Q7VST7" FT /db_xref="HSSP:1KG2" FT /db_xref="InterPro:IPR000086" FT /db_xref="UniProtKB/TrEMBL:Q7VST7" FT /protein_id="CAE44091.1" FT /translation="MAPMDFASRITAWQARHGRHDLPWQNTRDPYRIWLSEIMLQQTQV FT ATVIPYYQRFLERFPDVAALAAARQEDVMPYWAGLGYYARARNLHRCAQEIMQRCVGRF FT PPRAEEIATLPGIGRSTAAAIAAFAYGERSPIMDGNVKRVFTRHFGIEGDPARRAVEQQ FT LWALAAAQVQAAPDLDMPGYTQGLMDLGATLCTRGKPACERCPVAQSCIARRDGRQAEL FT PTPKARKAIPERSTAMLVLHGPDGILLHLRPAPGIWGGLWSLPECDPAHDPGAAARELG FT LQAEAPVELAAFAHTFTHYRLHVRPWYLAVRGAALRQAATPERWVSPAELPATALPAPV FT RKLLDGLLAALPAPPRQA" FT misc_feature 217879..218364 FT /note="HMMPfam hit to PF00730, HhH-GPD superfamily base FT excision DNA repair protein" FT misc_feature 218371..218421 FT /note="ScanRegExp hit to PS00764, Endonuclease III FT iron-sulfur binding region signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 218482..218838 FT /note="HMMPfam hit to PF00293, MutT-like domain" FT CDS complement(218876..219685) FT /transl_table=11 FT /locus_tag="BP3837" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti hypothetical protein FT MLL1636 TR:Q98K51 (EMBL:AP002997) (290 aa) fasta scores: FT E(): 5.6e-33, 36.12% id in 263 aa, and to Streptomyces FT coelicolor putative DNA-binding protein 2SCK31.04c FT TR:Q9ADL0 (EMBL:AL451182) (291 aa) fasta scores: E(): FT 4.5e-31, 42.58% id in 263 aa. Possible alternative FT translational start site" FT /db_xref="GOA:Q7VST6" FT /db_xref="InterPro:IPR000014" FT /db_xref="UniProtKB/TrEMBL:Q7VST6" FT /protein_id="CAE44092.1" FT /translation="MNSATHLAAHEGSARRRQALGEFVRTARARITPQMAGLPAGSRRR FT TPGLRREEVAQLSDISVTWYTWIEQGREVTVSPAVWARIANVLHLARAERAYLFELAEC FT ADPQQPRDEGGDAPVSLQACVDAIDAPAYALDRAWNLLASNAAMRELFDDWPLRDAQPN FT LLRYIFLDPAARELVVDWDQRARRVVAEFRADAGAHLDEADVVALLDELNRASPVFAHW FT WTRHAVVEREGGLREFQHPRSGRQNLQQITFRLATHPELKLVMLLPS" FT CDS 219775..220548 FT /transl_table=11 FT /locus_tag="BP3838" FT /product="ubiE/COQ5 methyltransferase family protein" FT /note="Similar to Erwinia herbicola biotin synthesis FT protein BioC SW:BIOC_ERWHE (O06898) (251 aa) fasta scores: FT E(): 9.1e-07, 31.4% id in 207 aa. C-terminal region is FT similar to Pseudomonas aeruginosa hypothetical protein FT PA3119 TR:O87011 (EMBL:U93274) (187 aa) fasta scores: E(): FT 1.1e-39, 62.08% id in 182 aa" FT /db_xref="GOA:Q7VST5" FT /db_xref="InterPro:IPR013216" FT /db_xref="UniProtKB/TrEMBL:Q7VST5" FT /protein_id="CAE44093.1" FT /translation="MSATPTHDAAVERQFSPRASAYLTSAVHAQGEDLLQMAAIAREHP FT GARLLDLGTGGGHVSFHVAPHVAEVVAYDLSQSMLDVVAGEAARRGLANLRTCRGKAEA FT LPFGDGEFDLVMSRYSTHHWEDPGQALREACRVLKPGGIAVFADVVSPGEALLDTWLQT FT IEVLRDTSHVRDYSAAEWLRMAAEAGLVTQGMTARRLPLEFTSWVERMRTPPELVTALR FT AMTDIAPAPVRRHFAIQPDGSFTSDTLTLVAVRPA" FT misc_feature 219781..220371 FT /note="HMMPfam hit to PF01209, ubiE/COQ5 methyltransferase FT family" FT repeat_region 220629..220660 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 220629..221515 FT CDS 220731..221681 FT /transl_table=11 FT /locus_tag="BP3839" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TT94" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TT94" FT /protein_id="CAE44094.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS" FT misc_feature 221112..221645 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region 221516..221681 FT repeat_region complement(221654..221681) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 221693..222592 FT /pseudo FT /transl_table=11 FT /locus_tag="BP3840" FT /product="conserved hypothetical protein (pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to the C-terminal regions of FT Rhodococcus sp AD45 putative racemase IsoG TR:Q9RBP6 FT (EMBL:AJ249207) (405 aa) fasta scores: E(): 3e-27, 33.81% FT id in 278 aa, and Pseudomonas aeruginosa hypothetical FT protein PA0446 TR:Q9I672 (EMBL:AE004482) (407 aa) fasta FT scores: E(): 1.7e-25, 34.93% id in 292 aa." FT /db_xref="PSEUDO:CAE44095.1" FT misc_feature 221693..222136 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family" FT CDS 222582..223736 FT /transl_table=11 FT /locus_tag="BP3841" FT /product="CAIB/BAIF family protein" FT /note="Similar to Escherichia coli hypothetical protein FT YfdE SW:YFDE_ECOLI (P76518) (381 aa) fasta scores: E(): FT 1.5e-39, 32.62% id in 377 aa, and to Drosophila FT melanogaster hypothetical protein CG10877 TR:Q9VDL4 FT (EMBL:AE003731) (441 aa) fasta scores: E(): 5.1e-44, 36.53% FT id in 375 aa" FT /db_xref="GOA:Q7VST4" FT /db_xref="HSSP:1PQY" FT /db_xref="InterPro:IPR003673" FT /db_xref="UniProtKB/TrEMBL:Q7VST4" FT /protein_id="CAE44096.1" FT /translation="MSADLPLQGITVVELSDNASLPFGGQVLAGLGAEVWKVERPGGDA FT SRGWGPSMWRGSGAAFHALNRGKKSICVDVKDPAQLDMLKDLIFSHADVFAHNLRPGSA FT GQYGLDPETLRARKPELICCELGAFGHVGPLSRDPDYDPLMQAFSGIMSLTGENGQPPS FT RSGVSIVDFGSGMWSVIGVISALYRRRRTGQGATVNASLLETAMAWMSVGIANYATDGE FT IGSRYDSGIAFIVPHRAYETMDGYLIVSCANDRLFGKLSVALDHPEWAVDPRFATNAGR FT LAHRGEIDGLIGECLARNTREYWKAQLEKFGVASAPIQTTAEIFEHEQTRALGILGRPT FT ADEIECVGVPISFDGVRPAPLGAAPDVGQFNDEFHALLKSARVS" FT misc_feature 222792..223361 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family" FT CDS 223776..225188 FT /transl_table=11 FT /locus_tag="BP3842" FT /product="hypothetical protein" FT /note="Similar to Salmonella typhimurium 2-methylcitrate FT dehydratase PrpD SW:PRPD_SALTY (P74840) (483 aa) fasta FT scores: E(): 1.3e-07, 24.77% id in 436 aa, and to FT Agrobacterium tumefaciens AGR_L_2924p TR:AAK90029 FT (EMBL:AE008346) (448 aa) fasta scores: E(): 4e-23, 27.89% FT id in 441 aa" FT /db_xref="GOA:Q7VST3" FT /db_xref="InterPro:IPR005656" FT /db_xref="UniProtKB/TrEMBL:Q7VST3" FT /protein_id="CAE44097.1" FT /translation="MNKNTVPDASGVFAKFATQTRFEDFPAKVIANTKRSIFDTVGVML FT AGGGPDAQAHRIAQMLAAWGGAPTGTVIGHDMKLPAPNAAFANAAMAHQYDFDDVHDEA FT VAHPTNSSFSGTLAAAQEMPGATGRKLLASVLVGNEVVCRVGLAIKGALYDYVWIWPAV FT VAIWGATTASARVMGLTADQLQSAYGLTLHQTGTTLQCHHGPGSDVRGFRDGFGARNGV FT TAAYMARAGLRGDPEAFEGKYGFYGAFFRGEYDRERLLAGLGQHYAAERISIKAWASAR FT ETHATLQALLELRERHGIDPAAIERVVMRVGETNMRFCEPGAARRRPTVRMDALCALPF FT CASVALIHGGVPLGAFSENGMRDERVLALAERIAWQADEALSHGTVEGGDVEISLRNGQ FT TFRHQVRHGMGHPDFPVSDELLVRKFIDCAALATCSVSESQVREFWEMVQKLEDISVAE FT FSAALRAFSRGN" FT CDS 225211..226179 FT /transl_table=11 FT /locus_tag="BP3843" FT /product="putative lipoprotein" FT /note="Similar to Comamonas testosteroni hypothetical FT protein Orf4 TR:Q9S155 (EMBL:AB024335) (325 aa) fasta FT scores: E(): 1.6e-32, 35.87% id in 315 aa, and to FT Pseudomonas putida hypothetical protein SW:YCLC_PSEPU FT (Q47100) (329 aa) fasta scores: E(): 1.5e-28, 34.7% id in FT 317 aa" FT /db_xref="GOA:Q7VST2" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VST2" FT /protein_id="CAE44098.1" FT /translation="MVSRRVLLQAAAAAACMGWKPAFSASWPARSVRLVSPTSVGTTTD FT TVARFVADGLSKRLKAAFMVEPRPGAGGIIASSEVARSRADGYTVLFGAIGHYLAQYLT FT DNPPVYDPVKDFAPIARVGFASVAIVVRSDSPYKTLADLIEAMRAQPKRITFSSFGLGS FT AGHLCGVLLNDATGTRGMHVAYKGTGAAVIDVASGLIDFTCQSAASVLPLIDSGQLRAL FT AVASRSRWPQLPDVPTAIEAGVPDFVAGSWMGALVRADTPPDIVQRLSDAMVGIARSPE FT FTALCAKQMIDVEIVDHAQWAADADNENARWQRVAALVKQG" FT misc_feature 225211..225282 FT /note="Signal peptide predicted for BP3843 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.986) with cleavage site FT probability 0.804 between residues 24 and 25" FT misc_feature 225226..225258 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 226181..227005 FT /transl_table=11 FT /locus_tag="BP3844" FT /product="putative enoyl-CoA hydratase/isomerase" FT /note="Similar to Archaeoglobus fulgidus enoyl-CoA FT hydratase AF0963 TR:O29299 (EMBL:AE001038) (259 aa) fasta FT scores: E(): 1.4e-25, 36.51% id in 241 aa, and to Bacillus FT subtilis putative hydroxybutyryl-dehydratase FenO TR:Q9L7W1 FT (EMBL:AF218939) (260 aa) fasta scores: E(): 1.6e-25, 35.84% FT id in 265 aa" FT /db_xref="GOA:Q7VST1" FT /db_xref="HSSP:1EY3" FT /db_xref="InterPro:IPR018376" FT /db_xref="UniProtKB/TrEMBL:Q7VST1" FT /protein_id="CAE44099.1" FT /translation="MAPALIVDDSLPGVRRLTLNRPERMNAFDGGLLMDLRRAIDACRD FT AQPEVRVIVIRGAGRAFCAGNDLKWLAQGVIGDLGAHLRHQDLMQSTFEALEAAPQAVI FT ACINGYALAGGLELALSCDIVIADESAELGDEHIRRNLLPGGGGSQRLPRKLGLPRALL FT YLLTGRRMTGREAQQMGLVSMAVPAGELESVTMEFASELARVDPHALASMKFAVRRGME FT LPLKEALWLERWTQYRYRIASPALENGVAEFGRRPGATLPGDAPNQDERIPE" FT misc_feature 226223..226741 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT misc_feature 226490..226552 FT /note="ScanRegExp hit to PS00166, Enoyl-CoA FT hydratase/isomerase signature." FT CDS 227029..227763 FT /transl_table=11 FT /locus_tag="BP3845" FT /product="nitroreductase family protein" FT /note="Similar to Burkholderia solanacearum probable FT oxidoreductase protein RSC1608 TR:CAD15310 (EMBL:AL646065) FT (235 aa) fasta scores: E(): 1.5e-35, 44.73% id in 228 aa, FT and to Rhizobium loti nitroreductase MLL1278 TR:Q98KX3 FT (EMBL:AP002997) (234 aa) fasta scores: E(): 9.1e-33, 44.14% FT id in 222 aa" FT /db_xref="GOA:Q7VST0" FT /db_xref="InterPro:IPR000415" FT /db_xref="UniProtKB/TrEMBL:Q7VST0" FT /protein_id="CAE44100.1" FT /translation="MLASLQAPPVRTVVADPQSVHAAIESRFCCREFLADPVERETLER FT ILRVASWAPSGSNNQPWKVYVVQGASRAALSQKVRAAQDALSQDPALADSYREPYQYYP FT VEWVSPYIERRRACGFGLYGVLNIARGDRVRMNEQLLRNFDFFGAPVGIFFTNDEILAE FT GALVDTAMFVQNVMLAARAEGLHTCVQAAWNRFSSVVLPHIGAQGERLVCALALGHADV FT DAPVNTFRPDRADPASFTAWLD" FT misc_feature 227083..227643 FT /note="HMMPfam hit to PF00881, Nitroreductase family" FT CDS complement(227844..228530) FT /transl_table=11 FT /locus_tag="BP3846" FT /product="TetR family transcriptional regulator" FT /note="Similar to Mycobacterium tuberculosis CDC1551 TetR FT family transcriptional regulator MT2581 TR:AAK46885 FT (EMBL:AE007094) (231 aa) fasta scores: E(): 1.1e-05, 28.77% FT id in 212 aa, and to Pseudomonas fluorescens putative FT transcriptional regulator Pfi2 TR:Q9RFR4 (EMBL:AF173683) FT (207 aa) fasta scores: E(): 3.7e-10, 27.58% id in 203 aa" FT /db_xref="GOA:Q7VSS9" FT /db_xref="InterPro:IPR012287" FT /db_xref="UniProtKB/TrEMBL:Q7VSS9" FT /protein_id=" |