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EBI DbfetchID BX640421; SV 1; linear; genomic DNA; STD; PRO; 349726 BP. XX AC BX640421; XX DT 09-AUG-2003 (Rel. 76, Created) DT 23-OCT-2008 (Rel. 97, Last updated, Version 7) XX DE Bordetella pertussis strain Tohama I, complete genome; segment 11/12 XX KW complete genome. XX OS Bordetella pertussis OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Bordetella. XX RN [2] RP 1-349726 RA Sebaihia M.; RT ; RL Submitted (06-AUG-2003) to the EMBL/GenBank/DDBJ databases. RL Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute, RL Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail: RL ms5@sanger.ac.uk XX RN [3] RA Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E., RA Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., RA Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A., RA Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I., RA Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., RA Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., RA Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., RA Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., RA Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., RA Barrell B.G., Maskell D.J.; RT "Comparative analysis of the genome sequences of Bordetella pertussis, RT Bordetella parapertussis and Bordetella bronchiseptica"; RL Nat. Genet. 35(1):0-0(2003). XX DR EMBL-CON; BX470248. DR RFAM; RF00005; tRNA. DR StrainInfo; 494022; Tohama I. XX FH Key Location/Qualifiers FH FT source 1..349726 FT /organism="Bordetella pertussis" FT /strain="Tohama I" FT /mol_type="genomic DNA" FT /db_xref="taxon:520" FT CDS complement(175..963) FT /transl_table=11 FT /gene="trpC" FT /locus_tag="BP3261" FT /product="indole-3-glycerol phosphate synthase" FT /EC_number="4.1.1.48" FT /note="Similar to Pseudomonas aeruginosa indole-3-glycerol FT phosphate synthase TrpC or Pa0651 SW:TRPC_PSEAE (P20577) FT (278 aa) fasta scores: E(): 7.9e-55, 62.79% id in 258 aa, FT and to Escherichia coli tryptophan biosynthesis protein FT TrpCF [includes: indole-3-glycerol phosphate synthase trpc FT or b1262 SW:TRPC_ECOLI (P00909) (452 aa) fasta scores: E(): FT 2.2e-26, 41.22% id in 262 aa" FT /db_xref="GOA:Q7VU67" FT /db_xref="HSSP:1PII" FT /db_xref="InterPro:IPR001468" FT /db_xref="InterPro:IPR011060" FT /db_xref="InterPro:IPR013785" FT /db_xref="InterPro:IPR013798" FT /db_xref="UniProtKB/Swiss-Prot:Q7VU67" FT /protein_id="CAE43527.1" FT /translation="MNDILAKILAVKAEEVATARQMRSEAELLREAQARQDVRGFAQAI FT EDKISQGKAGVIAEIKKASPSKGVLRENFDPAEIAASYAMHGAACLSVLTDVQFFQGSH FT DNLRRARAACSLPVLRKDFIIDPYQIISARAMGADCVLLIVATLAPAQLRDLETLAIDL FT GMDVLVEVHDAKELDAALALRTPLIGINNRNLRTFETTLQTTLDLLPMIPAGKRVVTES FT GILKPEDVRLMREHDVQAFLVGEAFMRANDPGVELARLVA" FT misc_feature complement(184..954) FT /note="HMMPfam hit to PF00218, Indole-3-glycerol phosphate FT synthase" FT misc_feature complement(754..798) FT /note="ScanRegExp hit to PS00614, Indole-3-glycerol FT phosphate synthase signature. Confirmed by InterPro eMOTIF FT pattern match." FT CDS complement(960..1991) FT /transl_table=11 FT /gene="trpD" FT /locus_tag="BP3262" FT /product="anthranilate phosphoribosyltransferase" FT /EC_number="2.4.2.18" FT /note="Similar to Pseudomonas aeruginosa anthranilate FT phosphoribosyltransferase TrpD or Pa0650 SW:TRPD_PSEAE FT (P20574) (349 aa) fasta scores: E(): 2.8e-55, 47.35% id in FT 340 aa" FT /db_xref="GOA:Q7VU66" FT /db_xref="InterPro:IPR000312" FT /db_xref="InterPro:IPR005940" FT /db_xref="InterPro:IPR017459" FT /db_xref="UniProtKB/Swiss-Prot:Q7VU66" FT /protein_id="CAE43528.1" FT /translation="MTIAATEALTRCIEHREIFHDEMLHLMRLLMRGELSPQIASALLM FT GLRVKKETVGEITAAAQVMREFATPVVTPNPQDLLDMCGTGGDGSHTFNISTTAMFVAA FT AAGVPIAKHGNRSASSSSGSADVLEALGANLQLTPEEVAECVAATGIGFMFAPAHHGAM FT KNVAAVRKELGVRTIFNILGPLTNPAGAANQLMGVFHPDLVGIQVRVLERLGSRHVLVV FT HGKDGMDEASLGAATMVGELKDGVVREYEIHPEDYGLSMMSNRGIKVSNREESRALVIE FT ALDNVDGVARDIVALNAGLAIYAGNKADSIPEALALAFETISNGSARAKLEEFCAYTRK FT FQK" FT misc_feature complement(1521..1973) FT /note="HMMPfam hit to PF00591, Glycosyl transferase family, FT a/b domain" FT CDS complement(2010..2573) FT /transl_table=11 FT /gene="trpG" FT /locus_tag="BP3263" FT /product="anthranilate synthase component II" FT /EC_number="4.1.3.27" FT /note="Similar to Pseudomonas putida anthranilate synthase FT component II TrpG SW:TRPG_PSEPU (P00901) (198 aa) fasta FT scores: E(): 7.8e-46, 64.73% id in 190 aa" FT /db_xref="GOA:Q7VU65" FT /db_xref="HSSP:1I1Q" FT /db_xref="InterPro:IPR000991" FT /db_xref="InterPro:IPR001317" FT /db_xref="InterPro:IPR006220" FT /db_xref="InterPro:IPR006221" FT /db_xref="InterPro:IPR011702" FT /db_xref="InterPro:IPR017926" FT /db_xref="UniProtKB/TrEMBL:Q7VU65" FT /protein_id="CAE43529.1" FT /translation="MLLMIDNYDSFTYNLVQYFGELGEEVRVARNDQITLDEIAAMRPD FT RICVSPGPCSPAEAGISVPVIQAFAGKLPILGVCLGHQAIGAAYGGDIVRAQQIMHGKT FT IAITHTGTDIFTGLPSPCTVIRYNSLTIDPATLPDCLEVTATAPDGDIMGVRHKTLPLY FT GVQFHPESVLSEHGHALMRNFLTR" FT misc_feature complement(2013..2567) FT /note="HMMPfam hit to PF00117, Glutamine amidotransferase FT class-I" FT misc_feature complement(2319..2354) FT /note="ScanRegExp hit to PS00442, Glutamine FT amidotransferases class-I active site. Confirmed by FT InterPro eMOTIF pattern match." FT CDS complement(2629..4149) FT /transl_table=11 FT /gene="trpE" FT /locus_tag="BP3264" FT /product="anthranilate synthase component I" FT /EC_number="4.1.3.27" FT /note="Similar to Pseudomonas putida anthranilate synthase FT component I TrpE SW:TRPE_PSEPU (P20579) (493 aa) fasta FT scores: E(): 7.8e-93, 56.8% id in 507 aa" FT /db_xref="GOA:Q7VU64" FT /db_xref="HSSP:1K0G" FT /db_xref="InterPro:IPR005256" FT /db_xref="InterPro:IPR005801" FT /db_xref="InterPro:IPR006805" FT /db_xref="InterPro:IPR015890" FT /db_xref="InterPro:IPR019999" FT /db_xref="UniProtKB/TrEMBL:Q7VU64" FT /protein_id="CAE43530.1" FT /translation="MTELEFKALAAQGYNRIPLVAETYADLDTPLAIYLKLAHSGPQGG FT RMSCLMESVVGGERFGRYSFIGLPARTVIRASGSTTEVLQDGHVAETHEGDPLAFIESY FT QARFKVALRPGMPRFCGGLAGYFGYDTVRYIEQRLGPAVKPFPDGMEEGTPDIMLLHVD FT ELVIVDNLAGRTYLMVYADPAQPEAYSHAQQRLLELRARLRRPVEIPYSYASMQTEERR FT DFQKADYLAAVARAKEYIAAGDVMQVQVGQVIAKPFRDAPLSLYRALRSLNPSPYMYFW FT NFGDFQVVGASPEILVRQEQIDDQGETRSQITIRPLAGTRKRGGTPEEDLALAAELQAD FT PKERAEHVMLIDLARNDVGRVAEIGSVRVSDTMVIERYSHVMHLVSNVAGKLLPGMSSM FT DVLRAAFPAGTLTGAPKVRAMEIIDELEPVRRGIYGGAAGYLSYGGEMDVAIAIRTGVI FT KNGTLYVQAAAGIVADSSPEAEWAETEAKARAVLRAAEQVQHGLDEPI" FT misc_feature complement(2665..3477) FT /note="HMMPfam hit to PF00425, chorismate binding enzyme" FT CDS complement(4413..5117) FT /transl_table=11 FT /gene="gph" FT /locus_tag="BP3265" FT /product="putative phosphoglycolate phosphatase" FT /EC_number="3.1.3.18" FT /note="Similar to Alcaligenes eutrophus phosphoglycolate FT phosphatase CbbzC SW:GPHC_ALCEU (P40852) (231 aa) fasta FT scores: E(): 1.3e-28, 47.14% id in 210 aa" FT /db_xref="GOA:Q7VU63" FT /db_xref="InterPro:IPR005833" FT /db_xref="InterPro:IPR005834" FT /db_xref="InterPro:IPR006346" FT /db_xref="InterPro:IPR006402" FT /db_xref="InterPro:IPR006439" FT /db_xref="UniProtKB/TrEMBL:Q7VU63" FT /protein_id="CAE43531.1" FT /translation="MHTINAVLLDLDGTLLDSVPDLAIAANAIRRDLGMAQLPEALVAT FT FVGKGVDNLVRRALAGSLDGAAPDEALFARGRLSFFKHYHAVNGAHATVFDGVKAGLAA FT MREQGLPLAVVTNKPTEFTLPLLERTGLAGFFRLVVCGDTCARRKPDPDQVLHACDRLG FT VAPAQAVTIGDSVNDALAGRRAGTAVLAVPYGYNEGMDVRSLDVDGIVDTLVDAAHWIS FT QRNAKPQRTTAA" FT misc_feature complement(4533..5108) FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase" FT CDS complement(5125..5862) FT /transl_table=11 FT /gene="rpe" FT /gene_synonym="cbbeP" FT /gene_synonym="cfxE" FT /locus_tag="BP3266" FT /product="ribulose-phosphate 3-epimerase" FT /EC_number="5.1.3.1" FT /note="Similar to Alcaligenes eutrophus ribulose-phosphate FT 3-epimerase, plasmid CbbEP or CfxE SW:RPEP_ALCEU (Q04539) FT (241 aa) fasta scores: E(): 1.1e-62, 69.74% id in 238 aa, FT and to Escherichia coli, and ribulose-phosphate 3-epimerase FT Rpe or Dod or b3386 or z4739 or ecs4228 SW:RPE_ECOLI FT (P32661) (225 aa) fasta scores: E(): 1.3e-58, 72.27% id in FT 220 aa" FT /db_xref="GOA:Q7VU62" FT /db_xref="HSSP:1H1Y" FT /db_xref="InterPro:IPR000056" FT /db_xref="InterPro:IPR011060" FT /db_xref="InterPro:IPR013785" FT /db_xref="UniProtKB/TrEMBL:Q7VU62" FT /protein_id="CAE43532.1" FT /translation="MHIMPPEIANTMSTQPASTRIAPSILSADFARLGEEVRNVVAAGA FT DWIHFDVMDNHYVPNLTIGPMVCAAIRPHVQVPIDVHLMVEPVDEIVPQFAKAGANVIT FT FHPEASRHVDRTLALIRDHGCKAGLVFNPATPLHYMDYVMDKLDVVLLMSVNPGFGGQA FT FIPATLAKLRDARARIDRWRAAGGQPILLEVDGGVKVDNIAEIRAAGADTFVAGSAIFG FT KPDYAQVIGQLRAEIARGETIAV" FT misc_feature complement(5191..5805) FT /note="HMMPfam hit to PF00834, Ribulose-phosphate 3 FT epimerase family" FT misc_feature complement(5347..5415) FT /note="ScanRegExp hit to PS01086, Ribulose-phosphate FT 3-epimerase family signature 2. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature complement(5677..5721) FT /note="ScanRegExp hit to PS01085, Ribulose-phosphate FT 3-epimerase family signature 1. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 5947..6342 FT /transl_table=11 FT /locus_tag="BP3267" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0591 TR:Q9I5U6 (EMBL:AE004495) (126 aa) fasta FT scores: E(): 9e-24, 56.19% id in 121 aa, and to Escherichia FT coli, and ApaA protein or b0050 or z0059 or ecs0055 FT SW:APAG_ECOLI (P05636) (125 aa) fasta scores: E(): 4.6e-21, FT 50.42% id in 117 aa" FT /db_xref="InterPro:IPR007474" FT /db_xref="PDB:1XQ4" FT /db_xref="UniProtKB/Swiss-Prot:Q7VU61" FT /protein_id="CAE43533.1" FT /translation="MSNRERPVKPYDLTVSVTPRYVPEQSDPSQQQYVFAYTVRITNTG FT SHPAQVISRHWIITDGEERVQEVRGLGVVGQQPLLAPGETFEYTSGCPLPTPIGTMRGT FT YHCVGENGIPFEVPIAEFLLAMPRTLH" FT CDS 6385..7674 FT /transl_table=11 FT /locus_tag="BP3268" FT /product="putative membrane-bound transglycolase" FT /note="Similar to Pseudomonas aeruginosa probable FT membrane-bound lytic murein transglycolase A Pa1222 FT TR:Q9I4B6 (EMBL:AE004552) (385 aa) fasta scores: E(): FT 8.8e-50, 41.99% id in 381 aa, and to many from Neisseria FT spp. eg. Neisseria meningitidis outer membrane lipoprotein FT Gna33 TR:Q9JPQ9 (EMBL:AF226404) (441 aa) fasta scores: E(): FT 2.7e-33, 34.7% id in 461 aa, and to Escherichia coli FT membrane-bound lytic murein transglycosylase A precursor FT MltA or Mlt or b2813 or z4130 or ecs3673 SW:MLTA_ECOLI FT (P46885) (365 aa) fasta scores: E(): 9.1e-16, 33.11% id in FT 302 aa" FT /db_xref="GOA:Q7VU60" FT /db_xref="InterPro:IPR005300" FT /db_xref="InterPro:IPR010611" FT /db_xref="UniProtKB/TrEMBL:Q7VU60" FT /protein_id="CAE43534.1" FT /translation="MKRLLCLSLLSVLLAACTTPSQIPPETAPGGVPPAAEGPLVVPPL FT SALSDTPPRALAGRYQRVAWTELPNWESDDLSRWWPLFLRNCKGLMRPTSGNLAAPARA FT TPRAWQPVCAAAVDPSKAPAAGDSAAVRRFLQTWLQPWRIAGADGRPATNTVTGYYEPL FT VRGSRRQGGRYQWPLYAVPADLLVVDLGSVYPDLTGKRVRGRLDGRRVVPYDTRAAIEA FT GDRKPPAIVWVDDPVDNFFLQVQGSGRVQLTDGPDRGTTIRVAYADHNGQPYASIGRWL FT IDKGELRADQASMQNIRAWAQRNPSRVQEMLNANPAVVFFREEAVVDPEQGPKGAYGIP FT LAPQRSIAVDAGFVPLGTPVYLSTTLPASDRPLQRTVFAQDTGTAIRGAARADFYWGYG FT EEAGQQAGRMKQRGQMWLLWPKQAGEPSAR" FT misc_feature 6385..6432 FT /note="Signal peptide predicted for BP3268 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.442 between residues 16 and 17" FT misc_feature 6403..6435 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 7671..8840 FT /transl_table=11 FT /locus_tag="BP3269" FT /product="putative monooxygenase" FT /note="Similar to Pseudomonas aeruginosa probable FT FAD-dependent monooxygenase Pa5221 TR:Q9HTW9 FT (EMBL:AE004935) (405 aa) fasta scores: E(): 1.1e-33, 39.01% FT id in 387 aa, and to Escherichia coli FT 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase FT UbiF or b0662 SW:UBIF_ECOLI (P75728) (391 aa) fasta scores: FT E(): 2.1e-29, 34.17% id in 395 aa" FT /db_xref="GOA:Q7VU59" FT /db_xref="InterPro:IPR003042" FT /db_xref="InterPro:IPR006076" FT /db_xref="InterPro:IPR010971" FT /db_xref="InterPro:IPR018168" FT /db_xref="UniProtKB/TrEMBL:Q7VU59" FT /protein_id="CAE43535.1" FT /translation="MKPQIVICGAGIVGLASALALARRGQRVAVLAPRAPVPAAEPDRY FT HPRVYAISPASQQFLAGLGVWDAMPAARLTPVQAMEIHGDGDGLVRLNAWQAAQPQLAW FT IVESGEIERVLMQAVQMFGIPWIAERCVGWRAGEVETDGGQRLRAELFVGADGAASPLR FT KAAGLRHDATPYDDTGLVTHLDAERAHHGTAFQWFRDDGVLALLPMPDTADGPQVFMVW FT SMRTPQAQALQAMEPAVRAAELERLLACASQGRLGRLRVRSPVLGFPLTLERAQMVAPG FT IALAGDAAHRLHPLAGQGLNLGLGDVEALACAVGDREPFRGPGDLRVLRRYQRARAEPV FT LAMRMATDGLHRLFGARGAPLAWLRNAGMQWVDAVPFIKRQLIEGASRN" FT misc_feature 7671..7736 FT /note="Signal peptide predicted for BP3269 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.990) with cleavage site FT probability 0.790 between residues 22 and 23" FT misc_feature 7683..7736 FT /note="1 probable transmembrane helix predicted for BP3269 FT by TMHMM2.0 at aa 5-22" FT misc_feature 8112..8714 FT /note="HMMPfam hit to PF01360, Monooxygenase" FT misc_feature 8547..8588 FT /note="ScanRegExp hit to PS01304, ubiH/COQ6 monooxygenase FT family signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 8837..9676 FT /transl_table=11 FT /locus_tag="BP3270" FT /product="putative thiol:disulphide interchange protein FT (periplasmic)" FT /note="Similar to Neisseria meningitidis (serogroup A), and FT putative thiol:disulphide interchange protein NMA0730 or FT NMB0550 TR:Q9JR63 (EMBL:AL162754) (260 aa) fasta scores: FT E(): 3.9e-26, 36.9% id in 233 aa, and to Escherichia coli FT thiol:disulfide interchange protein DsbC precursor or XprA FT or b2893 or z4231 or ecs3765 SW:DSBC_ECOLI (P21892) (236 FT aa) fasta scores: E(): 9e-12, 28.57% id in 231 aa" FT /db_xref="GOA:Q7VU58" FT /db_xref="InterPro:IPR012335" FT /db_xref="InterPro:IPR012336" FT /db_xref="InterPro:IPR017937" FT /db_xref="InterPro:IPR018950" FT /db_xref="UniProtKB/Swiss-Prot:Q7VU58" FT /protein_id="CAE43536.1" FT /translation="MSGPSFSGAGMNFRITVWCAAAAVWSSGALAQDGAGQAAPGTPDK FT VYSTTGSAPAKPGDKVYSTRSAQAPDPQADAVKERFAQRFEGFDVTAVRRTPYGLFEVQ FT IGTDLLYTDEKVTWVMEGPLIDALTRRDVTRERQEKLSSVPFEELPLDLAVKQVKGDGS FT RVMAVFEDPNCGYCKQLHRTLEDMDNITVYTFLYPILSPDSTTKVRDIWCASDPAKVWK FT DWMVRGQRPPTAECDAPVDQWLALGRQLMVRGTPAIFFKSGGRVSGALPRDELEARL" FT misc_feature 8837..8929 FT /note="Signal peptide predicted for BP3270 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.996 between residues 31 and 32" FT misc_feature 9305..9331 FT /note="ScanRegExp hit to PS00697, ATP-dependent DNA ligase FT AMP-binding site." FT misc_feature 9332..9388 FT /note="ScanRegExp hit to PS00194, Thioredoxin family active FT site." FT CDS 9736..10671 FT /transl_table=11 FT /locus_tag="BP3271" FT /product="putative 2-hydroxyacid dehydrogenase" FT /note="Similar to Streptomyces coelicolor putative FT 2-hydroxyacid dehydrogenase SCC61A.17 TR:Q9KYH6 FT (EMBL:AL356595) (330 aa) fasta scores: E(): 1.2e-49, 49.67% FT id in 308 aa, and to Bacillus subtilis D-3-phosphoglycerate FT dehydrogenase SerA SW:SERA_BACSU (P35136) (525 aa) fasta FT scores: E(): 1.4e-22, 32.48% id in 274 aa" FT /db_xref="GOA:Q7VU57" FT /db_xref="HSSP:1HKU" FT /db_xref="InterPro:IPR006140" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VU57" FT /protein_id="CAE43537.1" FT /translation="MAERYADWTTLGAQARVQVFRDALPSGPARAVALQPFDVIVAMRE FT RTPFPAELIQALPALRLLVTTGMRNNAIDMQACAAGGILVCGAPGSAEAGAATAELAWA FT HILALFKRLPQEDAAMRRGLWQTGMPQPLARRRLGVLGLGKLGSAVAQVGRAFGMEVVA FT WSPNLTDERAAQAGVTRVDKHTLFSTADVVSLHLILGESTRHIVDAAALSAMKPSAYLV FT NTSRAGLVDQDALLDALRKGRLAGAGLDVYESEPLPPTDVWRTLDNVLLTPHLGYVNAE FT NFQAFYANALEAVRAWAAGAPVHVLGGARG" FT misc_feature 9946..10557 FT /note="HMMPfam hit to PF00389, D-isomer specific FT 2-hydroxyacid dehydrogenase, catalytic domain" FT misc_feature 10147..10230 FT /note="ScanRegExp hit to PS00065, D-isomer specific FT 2-hydroxyacid dehydrogenases NAD-binding signature." FT CDS complement(10684..11634) FT /transl_table=11 FT /locus_tag="BP3272" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR012337" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE43538.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 10684..10715 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(10684..11736) FT misc_feature complement(10720..11253) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(11705..11736) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(11733..12695) FT /transl_table=11 FT /locus_tag="BP3273" FT /product="conserved hypothetical protein" FT /note="Similar to many eg. Neisseria meningitidis FT hypothetical protein NMA1465 TR:Q9JU71 (EMBL:AL162756) (319 FT aa) fasta scores: E(): 1.7e-74, 62.37% id in 303 aa, and to FT Escherichia coli hypothetical protein YdaO or b1344 FT SW:YDAO_ECOLI (P76055) (311 aa) fasta scores: E(): 4.5e-70, FT 58.6% id in 302 aa" FT /db_xref="GOA:Q7VU56" FT /db_xref="InterPro:IPR011063" FT /db_xref="InterPro:IPR012089" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/Swiss-Prot:Q7VU56" FT /protein_id="CAE43539.1" FT /translation="MTLTASPTAARTPAEEKARFEGNKLAKRLARETTRAIADYNMIEA FT GDKVMVCLSGGKDSYALLDILLSLQKRAPFAFEIIAVNLDQKQPGFPPEILPDYLRALG FT VPFHIETQDTYSIVTRVIPEGKTMCSLCSRLRRGILYRVASELGATKIALGHHRDDILG FT TFFLNLFYGGKAKGMPPKLVSDDGRHTVIRPLVYVPESDLIAYAQFKQFPIIPCNLCGS FT QENLKRKEVGRMIQEWDRKHPGRSWNVFNALSRVVPSHLMDRDLFDFVGLKPTGVADAG FT GDTAFDQIDPEPDTAGPGCASDAPAGQADGMAEQRVVFR" FT misc_feature complement(11820..12662) FT /note="HMMPfam hit to PF01171, Uncharacterized protein FT family UPF0021" FT CDS complement(12727..13086) FT /transl_table=11 FT /gene="folB" FT /locus_tag="BP3274" FT /product="dihydroneopterin aldolase" FT /EC_number="4.1.2.25" FT /note="Similar to Escherichia coli dihydroneopterin FT aldolase FolB or b3058 SW:FOLB_ECOLI (P31055) (122 aa) FT fasta scores: E(): 2.2e-05, 32.43% id in 111 aa, and to FT Xylella fastidiosa dihydroneopterin aldolase Xf0436 FT TR:Q9PG66 (EMBL:AE003894) (120 aa) fasta scores: E(): FT 2.6e-09, 40% id in 115 aa" FT /db_xref="GOA:Q7VU55" FT /db_xref="InterPro:IPR006156" FT /db_xref="InterPro:IPR006157" FT /db_xref="UniProtKB/TrEMBL:Q7VU55" FT /protein_id="CAE43540.1" FT /translation="MPTRRIFISGLALDARIGILEHERRATQPLHIDAEFDIDIMRNVD FT DHDIHSVLDYRRLREAIVEECTQAHVNLIETLTEQVAARLLADFDEIRSLRLRISKPMA FT FSDCAAVGVEIQISR" FT misc_feature complement(12730..13071) FT /note="HMMPfam hit to PF02152, Dihydroneopterin aldolase" FT CDS 13211..14113 FT /transl_table=11 FT /locus_tag="BP3275" FT /product="putative oxidoreductase" FT /note="Similar to C-terminal portion of many eg. Salmonella FT typhimurium alkyl hydroperoxide reductase subunit F AhpF or FT stm0609 SW:AHPF_SALTY (P19480) (521 aa) fasta scores: E(): FT 8.1e-08, 28.84% id in 312 aa, and to Escherichia coli alkyl FT hydroperoxide reductase subunit F AhpF or b0606 FT SW:AHPF_ECOLI (P35340) (521 aa) fasta scores: E(): 2.4e-07, FT 27.65% id in 311 aa" FT /db_xref="GOA:Q7VU54" FT /db_xref="InterPro:IPR000103" FT /db_xref="InterPro:IPR001327" FT /db_xref="InterPro:IPR013027" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VU54" FT /protein_id="CAE43541.1" FT /translation="MRQFYDAVIVGGGPAGASCAIWLARLGLAPLLVEAGERLGGLGND FT NPFTDDWIAVLPDVTGQQVAANIAASVAAAGVPVWLRAPATAVRPCKGGVEVQLGGAGQ FT DTVYGKSLVIASGVRARGLPGHPQQARWPGVLIGPGSPIVAQDYAGLTVAVLGGGDNAF FT ENFVYVRNRGARQVDLYARTVRAQQQWVARAGTEGVRVGPYRVDPAARTVDGRAYDLIL FT VFYGWEPQADFADSLGLERDSRGYLRTDFATAQTSLPDVYAIGEVADRMHPCVVTSLAD FT GVTAAKAIQRRWERPAPPR" FT misc_feature 13229..13297 FT /note="1 probable transmembrane helix predicted for BP3275 FT by TMHMM2.0 at aa 7-29" FT misc_feature 13235..13267 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(14115..15887) FT /transl_table=11 FT /locus_tag="BP3276" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein NMB1726 TR:Q9JY58 (EMBL:AE002523) (582 aa) fasta FT scores: E(): 1.1e-56, 40.9% id in 594 aa" FT /db_xref="GOA:Q7VU53" FT /db_xref="InterPro:IPR001478" FT /db_xref="InterPro:IPR007963" FT /db_xref="UniProtKB/TrEMBL:Q7VU53" FT /protein_id="CAE43542.1" FT /translation="MRMNDTPVIYRLEPHDPAGHRYRITLTVAEPAPEGQRLALPAWIP FT GSYLIRDFSRQIETLAARAGGRPVAVNKVDNHTWQVAPCSGPLQVDYTVYAWDLSVRGA FT HLDESHGFFNGTSVFLRVDGQENAPCILDLAPPRGIEGWKVYTSLPEAQGLPGAARRHG FT FGRYRAPDYDALIDHPVEMGTPQVIGFQAHGAEHELVFTGVAPRLDLARIAADVQRICE FT TQIAFFEPRSKQAPFLDSASRYVFMTMVTGDGYGGLEHRASTALMASRKDLPVLGQQGQ FT GEGYRGFLGLVSHEYFHTWNVKRIKPAAFAPYDLERPDLTRLLWVFEGFTSYYDDLLLL FT RSQTITRNDYLRLLGKTISGVARAPGRHKQSVAESSFDAWTRYYKQDENSPNALVSYYT FT KGSLVALGLDLLIRRDSGGVHSLDDVMRLLWRRYGRDFYRGRPQGLAEDALPTLIREAT FT GVDARRFIARHAHGTADVPLAEMLAPHGISLTWQAGANIPTLDVRTRKQGEALALATVY FT EGGAAHKGGLSAGDVLVAIDGLRVDAPAGLDVLLSQYHPGDRVTVHVFRRDELRSFQVR FT LAAPAPLDCVLAAA" FT misc_feature complement(14187..14471) FT /note="HMMPfam hit to PF00595, PDZ domain (Also known as FT DHR or GLGF)." FT CDS 15871..16698 FT /transl_table=11 FT /locus_tag="BP3277" FT /product="putative enoyl-CoA hydratase" FT /note="Similar to Rhizobium meliloti probable enoyl-CoA FT hydratase FadB1 or r00366 or smc01153 SW:ECHH_RHIME FT (Q52995) (257 aa) fasta scores: E(): 5.4e-62, 68.6% id in FT 258 aa, and to Homo sapiens enoyl-CoA hydratase, FT mitochondrial precursor EchS1 SW:ECHM_HUMAN (P30084) (290 FT aa) fasta scores: E(): 2.9e-48, 54.11% id in 255 aa" FT /db_xref="GOA:Q7VU52" FT /db_xref="HSSP:1EY3" FT /db_xref="InterPro:IPR001753" FT /db_xref="InterPro:IPR018376" FT /db_xref="UniProtKB/TrEMBL:Q7VU52" FT /protein_id="CAE43543.1" FT /translation="MSFMRISYISYSDRRQSMSESFVLVETRGRVGWLTLNRPKALNAL FT NDQLMEELGAALLALDADDGIGAIVITGSEKAFAAGADIGAMKDWSYMDVYRSDYITRN FT WETIKRVRKPVIAAVAGYALGGGCELAMMCDIVIAADSARFGQPEIKLGVIPGAGGTQR FT LPRAVGKAKAMDLALTARMMDAAEAERAGLVSRVVPADRLADEALEAATVIASMSLPSV FT MMAKECINRAYEVPLNDGLLFERRVFHSLFATEDQKEGMAAFTEKRKPDFKHR" FT misc_feature 15964..16467 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT misc_feature 16216..16278 FT /note="ScanRegExp hit to PS00166, Enoyl-CoA FT hydratase/isomerase signature. Confirmed by InterPro eMOTIF FT pattern match." FT CDS join(16995..18023,19073..19552) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3280" FT /product="putative exported protein (pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Rhizobium meliloti FT hypothetical transmembrane protein Smc01184 TR:CAC46188 FT (EMBL:AL591787) (512 aa) fasta scores: E():1.3e-34, 31.14% FT id in 505 aa" FT /db_xref="PSEUDO:CAE43544.1" FT CDS complement(18022..18972) FT /transl_table=11 FT /locus_tag="BP3279" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTC0" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR012337" FT /db_xref="UniProtKB/TrEMBL:Q7TTC0" FT /protein_id="CAE43545.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN" FT repeat_region complement(18022..19073) FT misc_feature complement(18058..18591) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(19043..19073) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 19824..20144 FT /transl_table=11 FT /locus_tag="BP3281" FT /product="putative inner membrane ATP synthase protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nmb1941 TR:Q9JXP8 (EMBL:AE002542) (117 aa) fasta FT scores: E(): 0.032, 32.69% id in 104 aa, and to Vibrio FT cholerae ATP synthase protein I AtpI or vc2771 FT SW:ATPZ_VIBCH (Q9KNG8) (129 aa) fasta scores: E(): 0.095, FT 39.7% id in 68 aa" FT /db_xref="GOA:Q7VU51" FT /db_xref="InterPro:IPR005598" FT /db_xref="UniProtKB/TrEMBL:Q7VU51" FT /protein_id="CAE43546.1" FT /translation="MGLVAAAIAGVVAGTAAGLSALAGAGAYFLPNALFALRLLVNVVR FT AARPNPFAFLYGELLKLLMTALLLWLLSWLAQGWLVWPAVLLGLVFTLKGYLLLLMLRK FT RS" FT misc_feature join(19851..19919,19977..20045,20055..20123) FT /note="3 probable transmembrane helices predicted for FT BP3281 by TMHMM2.0 at aa 10-32, 52-74 and 78-100" FT CDS 20217..21098 FT /transl_table=11 FT /gene="atpB" FT /gene_synonym="uncB" FT /gene_synonym="papD" FT /locus_tag="BP3282" FT /product="ATP synthase A chain" FT /EC_number="3.6.3.14" FT /note="Similar to Escherichia coli, and ATP synthase A FT chain AtpB or UncB or PapD or b3738 or z5236 or ecs4680 FT SW:ATP6_ECOLI (P00855) (271 aa) fasta scores: E(): 1e-24, FT 44.78% id in 297 aa" FT /db_xref="GOA:Q7VU50" FT /db_xref="InterPro:IPR000568" FT /db_xref="UniProtKB/Swiss-Prot:Q7VU50" FT /protein_id="CAE43547.1" FT /translation="MAAPSGASPQSEYIQHHLVHLNNIGEKQSVIAQFNVINYDSLFWS FT ILMGLLVVFCLWLAARRATAGVPGRFQGFIEMIVDMVDDQAKSIVTNAKSRLFVAPLAL FT TVFLWIILMNALDLLPVDLLPSIWRMTGLGAEHGDPLYYHRILPTADLNVPMGMSLGVL FT LLMFYYGIKIKHPGGFVKELFTAPFHAHGLASLVLAPFNLLLNLIEYAAKSVSLGMRLF FT GNMFAGELIFMLIALLGGAWTGFNGASIGLGIGHVLAGSVWAIFHILIVLLQAFIFMML FT TLVYIGQAHEGH" FT misc_feature join(20337..20396,20505..20573,20670..20729,20877..20945, FT 21003..21071) FT /note="5 probable transmembrane helices predicted for FT BP3282 by TMHMM2.0 at aa 41-60, 97-119, 152-171, 221-243 FT and 263-285" FT misc_feature 20502..20591 FT /note="HMMPfam hit to PF00119, ATP synthase A chain" FT misc_feature 20658..21080 FT /note="HMMPfam hit to PF00119, ATP synthase A chain" FT misc_feature 20862..20891 FT /note="ScanRegExp hit to PS00449, ATP synthase a subunit FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 21215..21457 FT /transl_table=11 FT /gene="atpE" FT /locus_tag="BP3283" FT /product="ATP synthase c chain" FT /EC_number="3.6.3.14" FT /note="Similar to Escherichia coli, ATP synthase C chain FT SW:ATPL_ECOLI (P00844) (79 aa) fasta scores: E(): 8.2e-09, FT 45.2% id in 73 aa, and to Neisseria meningitidis (serogroup FT A) ATP synthase C chain AtpE or NMA0514 or NMB1939 FT TR:Q9JR78 (EMBL:AL162753) (78 aa) fasta scores: E(): FT 2.7e-18, 71.42% id in 77 aa" FT /db_xref="GOA:Q7VU49" FT /db_xref="HSSP:1A91" FT /db_xref="InterPro:IPR000454" FT /db_xref="InterPro:IPR002379" FT /db_xref="InterPro:IPR005953" FT /db_xref="InterPro:IPR020537" FT /db_xref="UniProtKB/TrEMBL:Q7VU49" FT /protein_id="CAE43548.1" FT /translation="MTNVAFVALACGLIIGLGAIGACIGIALMGGKYLEASARQPELMN FT ALQTKMFLLAGLIDAAFLIGVGIAMLFAFANPFVG" FT misc_feature 21215..21247 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 21215..21301 FT /note="Signal peptide predicted for BP3283 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.954) with cleavage site FT probability 0.477 between residues 29 and 30" FT misc_feature 21230..21439 FT /note="HMMPfam hit to PF00137, ATP synthase subunit C" FT misc_feature join(21233..21301,21371..21439) FT /note="2 probable transmembrane helices predicted for FT BP3283 by TMHMM2.0 at aa 7-29 and 53-75" FT misc_feature 21326..21391 FT /note="ScanRegExp hit to PS00605, ATP synthase c subunit FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 21595..22065 FT /transl_table=11 FT /gene="atpF" FT /gene_synonym="uncF" FT /gene_synonym="papF" FT /locus_tag="BP3284" FT /product="ATP synthase B chain" FT /EC_number="3.6.3.14" FT /note="Similar to Escherichia coli ATP synthase B chain FT AtpF or UncF or PapF or b3736 or z5234 or ecs4678 FT SW:ATPF_ECOLI (P00859) (156 aa) fasta scores: E(): 1.5e-16, FT 45.51% id in 156 aa, and to Neisseria meningitidis FT (serogroup A) ATP synthase B chain AtpF or NMA0515 or FT NMB1938 TR:Q9JRB7 (EMBL:AL162753) (156 aa) fasta scores: FT E(): 9.3e-24, 55.12% id in 156 aa" FT /db_xref="GOA:Q7VU48" FT /db_xref="InterPro:IPR002146" FT /db_xref="InterPro:IPR005864" FT /db_xref="UniProtKB/Swiss-Prot:Q7VU48" FT /protein_id="CAE43549.1" FT /translation="MNLNATIFFQMLVFFVLGWFTMKFVWPPLTKAIDERRQKIADGLA FT AAEKGKADLAQAQARVSLIEASAKSETHARIIEAEKQAASMIEQARREAEAERARIVAQ FT AAQDAAQEVQRAREALRDDVAALAVKGAEQILKREVDARAHAELLNQLKAQL" FT misc_feature 21607..21675 FT /note="1 probable transmembrane helix predicted for BP3284 FT by TMHMM2.0 at aa 5-27" FT misc_feature 21610..22062 FT /note="HMMPfam hit to PF00430, ATP synthase B/B' CF(0)" FT CDS 22078..22617 FT /transl_table=11 FT /gene="atpH" FT /gene_synonym="uncH" FT /gene_synonym="papE" FT /locus_tag="BP3285" FT /product="ATP synthase delta chain" FT /EC_number="3.6.3.14" FT /note="Similar to Escherichia coli, and ATP synthase delta FT chain AtpH or UncH or PapE or b3735 or z5233 or ecs4677 FT SW:ATPD_ECOLI (P00831) (177 aa) fasta scores: E(): 5.1e-15, FT 33.89% id in 177 aa, and to Pseudomonas aeruginosa ATP FT synthase delta chain AtpH or Pa5557 TR:Q9HT17 FT (EMBL:AE004967) (178 aa) fasta scores: E(): 1e-17, 37.28% FT id in 177 aa" FT /db_xref="GOA:Q7VU47" FT /db_xref="InterPro:IPR000711" FT /db_xref="UniProtKB/Swiss-Prot:Q7VU47" FT /protein_id="CAE43550.1" FT /translation="MAELSTVARPYAEALFGAARDDKAGLAVWADLVSEMAQVAANPDV FT REAMADPRLDDKQRSEVFTGLIKSQLPQAARNFIELLVKNDRLLLLPVIATQFVALKNR FT HEGTAQAEITSAFELSDAQVKELIAALELKFGLKLKPHVSVDQELIGGVRVAVGDQVLD FT TSVKAQLARLRDTLAA" FT misc_feature 22096..22608 FT /note="HMMPfam hit to PF00213, ATP synthase delta (OSCP) FT subunit" FT CDS 22652..24193 FT /transl_table=11 FT /gene="atpA" FT /gene_synonym="uncA" FT /gene_synonym="papA" FT /locus_tag="BP3286" FT /product="ATP synthase alpha chain" FT /EC_number="3.6.3.14" FT /note="Similar to Escherichia coli ATP synthase alpha chain FT AtpA or UncA or PapA or b3734 or z5232 or ecs4676 FT SW:ATPA_ECOLI (P00822) (513 aa) fasta scores: E(): 1e-130, FT 69.29% id in 508 aa, and to Neisseria meningitidis ATP FT synthase F1, alpha subunit NMB1936 TR:Q9JXQ0 FT (EMBL:AE002542) (515 aa) fasta scores: E(): 3.3e-140, FT 74.07% id in 513 aa" FT /db_xref="GOA:Q7VU46" FT /db_xref="InterPro:IPR000194" FT /db_xref="InterPro:IPR000793" FT /db_xref="InterPro:IPR004100" FT /db_xref="InterPro:IPR005294" FT /db_xref="InterPro:IPR017458" FT /db_xref="InterPro:IPR018118" FT /db_xref="InterPro:IPR020003" FT /db_xref="UniProtKB/Swiss-Prot:Q7VU46" FT /protein_id="CAE43551.1" FT /translation="MQLNPSEISELLKSRIEGLGASTDVRTQGTVVSVTDGITRIHGLS FT DVMQGEMLEFPNNVFGVALNLERDSVGAVVLGDYTGVSEGDQVKTTGRILEVPVGPELK FT GRVVNTLGDAIDGKGPINTTQTDIIEKVAPGVIARRSVSQPLQTGIKAIDSMVPIGRGQ FT RELIIGDRQTGKTAVAVDTIISQKGKGVTCVYVAIGQKASTINNVVRKLEEHGAMEYTI FT VVAAAASDSAAMQYMAAYAGCTMGEYFRDRGEDALIVYDDLTKQAWAYRQVSLLLRRPP FT GREAYPGDVFYLHSRLLERAARVNEEYVEKFTNGAVKGKTGSLTALPIIETQAGDVSAF FT VPTNVISITDGQIFLETDLFNAGVRPAINAGISVSRVGGAAQTKVIKKLSGGIRTDLAQ FT YRELAAFAQFASDLDDATRRQLERGKRVVELLKQPQYQPLQVWELAVSLYAVNNGYLDD FT VDVAQILAFEKSLKDHLKAKHAALIQRIEDTKELSKDDEAELAAAVQDFKKHGAF" FT misc_feature 22730..23779 FT /note="HMMPfam hit to PF00006, ATP synthase alpha/beta FT family, nucleotide-binding domain" FT misc_feature 23156..23179 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 23747..23776 FT /note="ScanRegExp hit to PS00152, ATP synthase alpha and FT beta subunits signature. Confirmed by InterPro eMOTIF FT pattern match." FT misc_feature 23780..24184 FT /note="HMMPfam hit to PF00422," FT CDS 24292..25197 FT /transl_table=11 FT /gene="atpG" FT /gene_synonym="uncG" FT /gene_synonym="papC" FT /locus_tag="BP3287" FT /product="ATP synthase gamma chain" FT /EC_number="3.6.3.14" FT /note="Similar to Escherichia coli, and ATP synthase gamma FT chain AtpG or UncG or PapC or b3733 or z5231 or ecs4675 FT SW:ATPG_ECOLI (P00837) (287 aa) fasta scores: E(): 1.3e-34, FT 51.82% id in 301 aa" FT /db_xref="GOA:Q7VU45" FT /db_xref="InterPro:IPR000131" FT /db_xref="UniProtKB/Swiss-Prot:Q7VU45" FT /protein_id="CAE43552.1" FT /translation="MPGIKEIRTKIKSVQNTRKITKAMEMVAASKMRKAQERMRAGRPY FT ATKVREIAAHLMQANPEYSHPYLVEREVKAVGVVLVTTDKGLCGGLNTNISRVTLSKLK FT EFEQRSIKVQATAFGNKGLGLLTRIGAKLVSQEVQLGDKPDLDRLLGAIKVQLDDYLEG FT RIDALYVATTRFVNTMKQEPVFLRLLPLSNGLDDPFQSGVETLAKTAEIKSDYSWDYIY FT EPDAKSVIDDLLQRYVEGLLYQAVAENMASEQSARMVAMKSASDNAKKVIGDLQLVYNK FT TRQAAITKEISEIVGGAAAV" FT misc_feature 24295..25194 FT /note="HMMPfam hit to PF00231, ATP synthase" FT misc_feature 25150..25191 FT /note="ScanRegExp hit to PS00153, ATP synthase gamma FT subunit signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 25240..26640 FT /transl_table=11 FT /gene="atpD" FT /gene_synonym="uncD" FT /gene_synonym="papB" FT /locus_tag="BP3288" FT /product="ATP synthase beta chain" FT /EC_number="3.6.3.14" FT /note="Similar to Escherichia coli ATP synthase beta chain FT AtpD or UncD or PapB or b3732 or z5230 or ecs4674 FT SW:ATPB_ECOLI (P00824) (459 aa) fasta scores: E(): FT 7.5e-133, 79.52% id in 464 aa" FT /db_xref="GOA:Q7VU44" FT /db_xref="InterPro:IPR000194" FT /db_xref="InterPro:IPR000793" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR004100" FT /db_xref="InterPro:IPR005722" FT /db_xref="InterPro:IPR018118" FT /db_xref="InterPro:IPR020003" FT /db_xref="UniProtKB/Swiss-Prot:Q7VU44" FT /protein_id="CAE43553.1" FT /translation="MSNGTIVQCIGAVVDIQFPRDNMPKIYEALTLVDEGSSFAEKGLT FT LEVQQQLGDGVVRTIALGSSDGLRRGMQVAGTGAPISVPVGHGTLGRIMDVLGRPIDEA FT GPIASDEKRAIHQPAPRFDELSPSVELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTV FT NMMELINNIAKQHSGLSVFAGVGERTREGNDFYHEMEESNVLDKVAMVFGQMNEPPGNR FT LRVALTGLTMAEKFRDEGRDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEM FT GVLQERITSTKTGSITSIQAVYVPADDLTDPSPATTFQHLDSTVVLSRDIAALGIYPAV FT DPLDSSSRQLDPQVVGEEHYQVARGVQQTLQRYKELRDIIAILGMDELSPEDKQAVARA FT RKIQRFLSQPFYVAEVFTGSPGKYVSLAETIRGFKMIVDGECDALPEQAFYMVGTIDEA FT FEKAKKLQ" FT misc_feature 25264..26283 FT /note="HMMPfam hit to PF00006, ATP synthase alpha/beta FT family, nucleotide-binding domain" FT misc_feature 25702..25725 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 26251..26280 FT /note="ScanRegExp hit to PS00152, ATP synthase alpha and FT beta subunits signature. Confirmed by InterPro eMOTIF FT pattern match." FT misc_feature 26347..26637 FT /note="HMMPfam hit to PF00306, ATP synthase alpha/beta FT chain, C terminal domain" FT CDS 26650..27072 FT /transl_table=11 FT /gene="atpC" FT /gene_synonym="uncC" FT /gene_synonym="papG" FT /locus_tag="BP3289" FT /product="ATP synthase epsilon chain" FT /EC_number="3.6.3.14" FT /note="Similar to Escherichia coli ATP synthase epsilon FT chain AtpC or UncC or PapG or b3731 SW:ATPE_ECOLI (P00832) FT (138 aa) fasta scores: E(): 3.3e-19, 54.4% id in 125 aa" FT /db_xref="GOA:Q7VU43" FT /db_xref="InterPro:IPR001469" FT /db_xref="InterPro:IPR020546" FT /db_xref="InterPro:IPR020547" FT /db_xref="UniProtKB/Swiss-Prot:Q7VU43" FT /protein_id="CAE43554.1" FT /translation="MATLHVDVVSAEEAIFTGEAKFVVLPGEAGELGILPGHTPLISRI FT RPGTVKIVRADEGEENIFVAGGILEVQPGSVTVLADTAIRAADLDEARAVAAREKAEEA FT LRNAKDKADIAVVEAELAMLAAQAVAARKLRQGRTH" FT misc_feature 26653..27039 FT /note="HMMPfam hit to PF00401, ATP synthase, Delta/Epsilon FT chain, long alpha-helix domain" FT CDS 27255..28139 FT /transl_table=11 FT /locus_tag="BP3290" FT /product="hypothetical protein" FT /note="No significant database matches" FT /db_xref="GOA:Q7VU42" FT /db_xref="InterPro:IPR002197" FT /db_xref="InterPro:IPR009057" FT /db_xref="UniProtKB/TrEMBL:Q7VU42" FT /protein_id="CAE43555.1" FT /translation="MRALLECAVLVMPDQPSWVGAWLAAVRGPEARLADRLRLHEYPLL FT SGGRDGLALGQAAMSLRRFDALLLPVQASTLGWARLVLAQASPALSTPVLVLVRDLTAP FT AIADLLHLGARDFLRVPACLEELRVRASRAWRAIPPPAAGARAAVPVPGAEPGGGPGPD FT APADPGEGGGYRLPGMPETADASAAAPCMLAQTRAPYAATLGDVRMAVQRELPFRQAKA FT QVVGRFERAYLRGALARHGGNVAQAARAACKHRRAFWALMRKHGIDARPYREGVAGAWP FT YETAPPRDPADEA" FT CDS 28215..29291 FT /transl_table=11 FT /gene="hemE" FT /locus_tag="BP3291" FT /product="uroporphyrinogen decarboxylase" FT /EC_number="4.1.1.37" FT /note="Similar to Escherichia coli uroporphyrinogen FT decarboxylase HemE or b3997 SW:DCUP_ECOLI (P29680) (354 aa) FT fasta scores: E(): 1.8e-84, 61.93% id in 352 aa" FT /db_xref="GOA:Q7VU41" FT /db_xref="InterPro:IPR000257" FT /db_xref="InterPro:IPR006361" FT /db_xref="UniProtKB/Swiss-Prot:Q7VU41" FT /protein_id="CAE43556.1" FT /translation="MSVAPLKNDVFLRALLREPVPYTPIWLMRQAGRYLPEYNATRARA FT GSFMGLAQNPDYACEVTLQPLARYPLDAAILFSDILTVPHAMGLGLDFAPGEGPRFAHP FT VRDESDVAKLAVPDMDSLRYVFDAVRTIRRELDGRVPLIGFAGSPWTIACYMAEGRGSD FT DYRLIKSMLYGRPDLLHRILEINAEATRHYLNAQIDAGAQAVMLFDSWGGVLADGLFQQ FT FSLAYTRRVVEGLTREREGRRVPVIVFTKGGGQWLEEIAACGCDAVGLDWTVNLGAARR FT RVTDAVALQGNLDPMTLFGGAQAVRAEARRTLDAFGPVGKGGHVFNLGHGISQYSPPEV FT VSELVDEVHTYSRALHAG" FT misc_feature 28230..29267 FT /note="HMMPfam hit to PF01208, Uroporphyrinogen FT decarboxylase (URO-D)" FT misc_feature 28284..28313 FT /note="ScanRegExp hit to PS00906, Uroporphyrinogen FT decarboxylase signature 1. Confirmed by InterPro eMOTIF FT pattern match." FT misc_feature 28641..28691 FT /note="ScanRegExp hit to PS00907, Uroporphyrinogen FT decarboxylase signature 2. Confirmed by InterPro eMOTIF FT pattern match." FT CDS 29658..31700 FT /transl_table=11 FT /locus_tag="BP3292" FT /product="putative primosomal protein" FT /note="Similar to Neisseria meningitidis primosomal protein FT N` NMB0551 TR:Q9K0N6 (EMBL:AE002411) (729 aa) fasta scores: FT E(): 6.6e-91, 42.97% id in 740 aa, and to Escherichia coli FT primosomal protein N' PriA or b3935 SW:PRIA_ECOLI (P17888) FT (732 aa) fasta scores: E(): 1.9e-77, 39.56% id in 738 aa" FT /db_xref="GOA:Q7VU40" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR005259" FT /db_xref="InterPro:IPR011545" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR014021" FT /db_xref="UniProtKB/TrEMBL:Q7VU40" FT /protein_id="CAE43557.1" FT /translation="MRVALDVPLPGPFDYRSAAPLPLGARVIVPFGRRKLVGVVVEHPG FT QPSIDPAQVREVEQPLEDLPPMPADWMRLARFAADYYQRPLGEVMLPVLPPPLRKPSAY FT QGKRSGLGPVARLDARKPRAAAAVAAEPDQAPELNEAQREAVDTIGALSAFQPVLLHGV FT TGSGKTEVYLHAAARVLQAGRQVLLMVPEINLTPQLEGALRARLEALVGPQGVAILHSG FT LADGERVQAWARAQRGQARLLLGTRMSIFAPLPELGLIVVDEEHDPSYKQQEGLRYSAR FT DLAIWRARDLDIPVVLGSATPSLESWQHAERGRYLRLTLPGRARASSLPEIRLIDTRRL FT QLKQGLSPQFIEAIGQRLERGEQSLVFLNRRGYAPVLHCASCAWVSHCPRCSTFTVLHR FT GPGAGGYRLQCHHCGYQAPVPRACPECGDQDLEPMGRGTQRIEEQLAEWFPQARIARID FT ADSTRRKGSAQALFAAVHAGEVDIMVGTQMVAKGHDFARLGLVGVLNADSMLFAHDFRA FT PERLFAQLMQVAGRAGRHAAGAQVLIQTGYPEQPVYQALLRHDYAGFARHALQEREDTG FT LPPFAYQALLTAEARELTVAQGFLQRARDLATGEPWPGVDAITLYDPVPLRVVRVAHVE FT RAQLLIESTSRPALQGFLTAWAACLPQLAVEARVRWQLEVDPLEI" FT misc_feature 30141..30164 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 31743..33812 FT /transl_table=11 FT /gene="rep" FT /locus_tag="BP3293" FT /product="ATP-dependent DNA helicase" FT /EC_number="3.6.1.-" FT /note="Similar to Escherichia coli ATP-dependent DNA FT helicase Rep or b3778 SW:REP_ECOLI (P09980) (673 aa) fasta FT scores: E(): 4.4e-103, 49.48% id in 677 aa" FT /db_xref="GOA:Q7VU39" FT /db_xref="InterPro:IPR000212" FT /db_xref="InterPro:IPR014016" FT /db_xref="InterPro:IPR014017" FT /db_xref="UniProtKB/TrEMBL:Q7VU39" FT /protein_id="CAE43558.1" FT /translation="MSASDTSIGSGLNPSQKEAVLYLDGPCLVLAGAGSGKTRVITQKM FT AYLLRECGYMGRNIVALTFTNKAAREMAERVKTLVDPKLAKGLTISTFHALGVRLLREE FT AAHAGLKPQFSILDADDAMSIIQELLATTDRGRLREVQSIISLWKNALLTPDQAAAAAI FT TPTEVEAVTVYRGYAATLAAYQAVDFDDLIRIPAELLERNKEVRTRWQNRVRYLLVDEY FT QDTNVCQYRLVQLLTGVRAMFTAVGDDDQAIYAWRGATIENLAKLTTDYPNLKLIKLEQ FT NYRSVQRILAAANNVIERNPKLFEKKLWSDLGHGEPIIVSPMNGDEHEAESIAMKVSAA FT RFERQAQWKDFAILYRSNHQSRVLEQALRNLKIPYTISGGQSFFDKAEVRDILAYLRLV FT ANDEDDPAFIRAATTPKRGIGQGTLQTLGQYAAQRQCSLLAAVDEAGLESLLAPRQLEP FT LRTFAEFVRRIQWRAGRGVEGQPARAPEPAGQILDDLLSAIQYERYLYDMLEERPAQTR FT WQNVLELTGWLKRKAEEDGMTLFDLVQHVALVTMLERGEEEEPDAVKLSTLHASKGLEY FT PHVYLAGVEEGLLPHLGKDDEDSGDPARAAETLATRIQEERRLMYVGITRAQRSLNLSW FT CKKRRRAREDVVREPSRFIEEMGLGDAKVQEDEATRAMSPKERLGMLKALLKKD" FT misc_feature 31776..33152 FT /note="HMMPfam hit to PF00580, UvrD/REP helicase" FT misc_feature 31833..31856 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT repeat_region 33809..33840 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 33809..34861 FT CDS 33911..34861 FT /transl_table=11 FT /locus_tag="BP3294" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTC0" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR012337" FT /db_xref="UniProtKB/TrEMBL:Q7TTC0" FT /protein_id="CAE43559.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN" FT misc_feature 34292..34825 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(34830..34861) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(34990..36123) FT /transl_table=11 FT /locus_tag="BP3295" FT /product="putative peptidase" FT /note="Similar to Bacillus halodurans carboxypeptidase G2 FT bh0352 TR:Q9KFW8 (EMBL:AP001508) (374 aa) fasta scores: FT E(): 1e-41, 37.46% id in 363 aa, and to Pseudomonas sp FT carboxypeptidase G2 precursor cpg2 SW:CBPG_PSES6 (P06621) FT (415 aa) fasta scores: E(): 2e-21, 26.41% id in 371 aa" FT /db_xref="GOA:Q7VU38" FT /db_xref="InterPro:IPR001261" FT /db_xref="InterPro:IPR002933" FT /db_xref="InterPro:IPR011650" FT /db_xref="InterPro:IPR017150" FT /db_xref="UniProtKB/TrEMBL:Q7VU38" FT /protein_id="CAE43560.1" FT /translation="MTTTLPDTDQLVAGIQSWIQCESPSNSPAGVTAMAHLAAEYARAV FT GLAVEIRPLNAEVGPLVHATNRAAGDTRPGVLILGHIDTVHPIGTLQDNPCRIDGDRLY FT GPGSYDMKAGIYLALSALRGLPSPDATALPVDFLLVPDEETGSHASREHIEHYAARAKY FT ALVCEPARPNGGKCVTARKGTGMLRLNVKGRPAHAGMQHEKGRSAIREMAHQVLELESM FT TDYERGITVSVGTIAGGTVTNTVPAQCRCVVDFRVPDMGATEDVLRRMRNLCSVGPDME FT LDIDVELNRPPMVKTEAASALLQLAQDFAAQAGFALEDAPMTGGGSDANFTSAMGVPTL FT DGLGADGDGAHTLNEYILVSTLAARMRFWELLLKELH" FT misc_feature complement(35146..36081) FT /note="HMMPfam hit to PF01546, Peptidase family FT M20/M25/M40" FT misc_feature complement(35869..35898) FT /note="ScanRegExp hit to PS00758, ArgE / dapE / ACY1 / CPG2 FT / yscS family signature 1." FT CDS complement(36167..37072) FT /transl_table=11 FT /locus_tag="BP3296" FT /product="hypothetical protein" FT /note="No significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VU37" FT /protein_id="CAE43561.1" FT /translation="MKPADLTNADRIALELGHAGRNAIPYLDDDRNADRPFTLNTYRPY FT GYTPDRPVVVVQHGVLRNGADYRDFWIPAADRHKLLIVAPTFSDEIWPGVESYNNGRAF FT TAAGNPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAPF FT HAVTAANPGWYTLPTFEHRFPEGLDGVGLTEDHLARLLAYPMTILAGDQDIATDDPNLP FT SEPAALRQGPHRYARARHYYEAGRRAAAQRGLPFGWQLQVVPGIGHDGQAMSQVCASLW FT FDGRMPDAAELARLAGSQSA" FT CDS complement(37075..38775) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3297" FT /product="oligopeptide transport ATP-binding protein FT (pseudogene)" FT /note="Pseudogene. This CDS appears to be a fusion of two FT adjacent CDSs, resulting from a deletion event. No FT significant database matches to the full length CDS. FT N-terminal region is similar to Bacillus subtilis FT oligopeptide transport ATP-binding protein OppD FT SW:OPPD_BACSU (P24136) (358 aa) fasta scores: E(): 4.1e-45, FT 52.43% id in 288 aa. C-terminal region is similar to FT Bacillus subtilis oligopeptide transport ATP-binding FT protein AppF SW:APPF_BACSU (P42065) (329 aa) fasta scores: FT E(): 6e-48, 51.17% id in 297 aa. N-terminal region is FT similar to BP3859, 63.273% identity (63.273% ungapped) in FT 275 aa overlap. C-terminal region is similar to BP3858, FT 60.927% identity (61.130% ungapped) in 302 aa overlap. CDS FT appears to be a fusion of two separate transport system FT proteins, resulting from a deletion following around codon FT 282" FT /db_xref="PSEUDO:CAE43562.1" FT misc_feature complement(37354..37926) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(37540..37584) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(37882..37905) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT variation complement(37930..37932) FT /note="Large deletion in pertussis following this codon FT relative to parapertussis and bronchiseptica" FT misc_feature complement(38080..38673) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(38266..38310) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(38629..38652) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(38772..39692) FT /transl_table=11 FT /locus_tag="BP3298" FT /product="putative binding-protein-dependent transport FT permease" FT /note="Similar to Agrobacterium tumefaciens strC58 FT Agr_pat_365p TR:AAK90629 (EMBL:AE007895) (318 aa) fasta FT scores: E(): 9.6e-58, 53.95% id in 291 aa, and to FT Escherichia coli dipeptide transport system permease FT protein DppC or b3542 or z4959 or ecs4422 SW:DPPC_ECOLI FT (P37315) (300 aa) fasta scores: E(): 3.6e-35, 39.56% id in FT 273 aa" FT /db_xref="GOA:Q7VU36" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7VU36" FT /protein_id="CAE43563.1" FT /translation="MANPPSNGRTRTVHPLSETPRRAQILKKLHSRPTVRGSVIALLAL FT VALILLAPYFAPQNPYDLASLNLLDGRLPPRSPTMDGGFYWLGTDDQGRDMFSAILYGL FT RISLLVGLTAVVLATAIGSLVGLLAAYAGGVIDAVLMRIVDFILGFPTILVALVLLAMM FT GRGVDKVILALVVVQWAHYARIMRGRALQERRKEYVEAAANLGFPAWRIMLFHLLPNCM FT APVMVFATIQIANAIVLEATLSFLGVGVPVTEPSLGLLIANGFQYLLSGDYWINLFPGL FT ALLLLILSINIVGDRLRESLDPRRA" FT misc_feature complement(join(38811..38867,38898..38963,39000..39065, FT 39207..39272,39309..39374,39525..39590)) FT /note="6 probable transmembrane helices predicted for FT BP3298 by TMHMM2.0 at aa 34-56, 106-128, 140-162, 209-231, FT 243-265 and 275-294" FT misc_feature complement(38895..39125) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature complement(39036..39122) FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign. Confirmed by FT InterPro eMOTIF pattern match." FT CDS complement(39700..40677) FT /transl_table=11 FT /locus_tag="BP3299" FT /product="putative binding-protein-dependent transport FT permease" FT /note="Similar to Agrobacterium tumefaciens strC58 FT Agr_pat_363p TR:AAK90628 (EMBL:AE007895) (323 aa) fasta FT scores: E(): 2.2e-66, 53.43% id in 320 aa, and to Bacillus FT subtilis oligopeptide transport system permease protein FT AppB SW:APPB_BACSU (P42062) (317 aa) fasta scores: E(): FT 1.9e-40, 36.64% id in 322 aa" FT /db_xref="GOA:Q7VU35" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7VU35" FT /protein_id="CAE43564.1" FT /translation="MALFILRRLIQSLFVLLAVSVVVFFAVYAVGDPIELLVSPEASAE FT ARQAMIARLGLDLPVWQQYGNFLWRALHGDLGNSFVHGIPAISLILQRIPATFELVLVA FT IVLTCTIGIPLGLVAGLHRDRPLGRGIMATSVLGFSLPNFWQGMMLILLFSVWLGWLPA FT SGRGDTANLFGVPLSILTLDGWSHVIMPAINLAVANVALVLRLTASGVVEAQSQEYVKF FT ARAKGIKPGRIVRRHILRNILIPVVTVIGMEFGHLIAYSTITETVFAWPGMGKLLIDSV FT YQLDRPVVVAYVMLVTLIFVVINLVVDILYAALDPRVQLVAPAQ" FT misc_feature complement(join(39757..39813,39886..39951,40060..40125, FT 40207..40272,40312..40377,40588..40638)) FT /note="6 probable transmembrane helices predicted for FT BP3299 by TMHMM2.0 at aa 13-30, 100-122, 135-157, 184-206, FT 242-264 and 288-307" FT misc_feature complement(39832..40047) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature complement(40591..40677) FT /note="Signal peptide predicted for BP3299 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.621 between residues 29 and 30" FT CDS complement(40736..41770) FT /transl_table=11 FT /locus_tag="BP3300" FT /product="hypothetical protein" FT /note="No significant database matches" FT /db_xref="GOA:Q7VU34" FT /db_xref="InterPro:IPR007036" FT /db_xref="UniProtKB/TrEMBL:Q7VU34" FT /protein_id="CAE43565.1" FT /translation="MRRPYAFQRAVVVTPIQFEPLSGVAMSPPPAVAAVRPFELACPRL FT DAERVGNGATPGVWHFDAGLPGRHVLLTALIHGNELCGAWALKDALAAGLRPRRGKLTL FT AFCNLAAFDRFDPLNYAPARFVDEDMNRVWSADKLASPDTQERRRARALLPWVEQADWL FT LDFHSMSNADEPLQLTGTQPRNIELALKLGNPAHLVADAGHAAGVRLRDYGRFGAEGEN FT GTRSLLIECGFHGAPTVARDILARFLLEAGTLAADDIPPGWLADAAPRQRALRVTHAVA FT ARSADFRFAQPWQGLERIARAGTVIGWSDGEPVATPYDDCVLIMPSLANLRPGVTVVRL FT AQPI" FT CDS complement(join(41819..42883,42887..43447)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3301" FT /product="putative binding-protein-dependent transport FT protein (pseudogene)" FT /note="Pseudogene. This CDS contains an in-frame TAG stop FT codon. The sequence has been checked and believed to be FT correct. Similar to Agrobacterium tumefaciens strC58 FT Agr_pat_361p TR:AAK90627 (EMBL:AE007895) (545 aa) fasta FT scores: E(): 1.6e-46, 37.73% id in 538 aa, and to Vibrio FT cholerae peptide ABC transporter, periplasmic FT peptide-binding protein Vc0171 TR:Q9KVH5 (EMBL:AE004107) FT (542 aa) fasta scores: E(): 1.1e-22, 31.43% id in 528 aa" FT /db_xref="PSEUDO:CAE43566.1" FT misc_feature complement(join(41891..42883,42887..43441)) FT /note="HMMPfam hit to PF00496, Bacterial extracellular FT solute-binding proteins, family 5" FT variation complement(42884..42886) FT /note="TAG stop in pertussis TGG in parapertussis" FT misc_feature complement(43163..43228) FT /note="ScanRegExp hit to PS01040, Bacterial extracellular FT solute-binding proteins, family 5 signature." FT CDS complement(43745..43981) FT /transl_table=11 FT /locus_tag="BP3302" FT /product="hypothetical protein" FT /note="No significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VU33" FT /protein_id="CAE43567.1" FT /translation="MSDLTLSHNARLTDSLERELLRGAMEDQSNTIRPLAAVKAAAVGV FT GRGVRAVFAFIDEVNESMNRARAQSAHYTGSQW" FT CDS complement(44108..44971) FT /transl_table=11 FT /locus_tag="BP3303" FT /product="conserved hypothetical protein" FT /note="Similar to many eg. Neisseria meningitidis FT hypothetical protein NMA1369 TR:Q9JUD3 (EMBL:AL162755) (296 FT aa) fasta scores: E(): 8.5e-36, 47.23% id in 271 aa" FT /db_xref="InterPro:IPR000631" FT /db_xref="InterPro:IPR017953" FT /db_xref="UniProtKB/TrEMBL:Q7VU32" FT /protein_id="CAE43568.1" FT /translation="MDTPTSSSLPAIERQHLPALFAARPTDAHKGSCGTLGVIGGGPGM FT VGAALLAARAGLKVGAGKVLVGLVADTPPLPCDPMQPELMLRDFRGLLEAGLGIDAWTA FT GCGCGMDALAANALSELFQLRGDAALVLDADGLNLLAAGAVQARWGDAPVVLTPHPAEA FT GRLLGLSTEAVQADRPGAARALAARYGAWIVLKGAGSIVCDPAGACRINRTGNPGLATA FT GTGDVLAGILGSLLAQRIAPEQAVPGAVWLHGAAADALVTHGVGPIGLTAGELADSARR FT LRNSRA" FT misc_feature complement(44129..44866) FT /note="HMMPfam hit to PF01256, Uncharacterized protein FT family UPF0031" FT misc_feature complement(44276..44308) FT /note="ScanRegExp hit to PS01050, Uncharacterized protein FT family UPF0031 signature 2. Confirmed by InterPro eMOTIF FT pattern match." FT CDS 45060..45881 FT /transl_table=11 FT /locus_tag="BP3304" FT /product="putative enoyl-CoA hydratase" FT /note="Similar to Mycobacterium tuberculosis enoyl-CoA FT hydratase EchA15 or Rv2679 or Mtv010.03 TR:O53232 FT (EMBL:AL021186) (276 aa) fasta scores: E(): 7.6e-60, 59.1% FT id in 269 aa, and to Escherichia coli probable enoyl-CoA FT hydratase PaaG or b1394 SW:PAAG_ECOLI (P77467) (262 aa) FT fasta scores: E(): 2.7e-15, 29.11% id in 261 aa. Similar to FT BP0029, 51.331% identity in 263 aa overlap." FT /db_xref="GOA:Q7VU31" FT /db_xref="InterPro:IPR001753" FT /db_xref="InterPro:IPR018376" FT /db_xref="UniProtKB/TrEMBL:Q7VU31" FT /protein_id="CAE43569.1" FT /translation="MSETDTNPEHYARYRALRIRRHPEGILELVMGAKDASGKLSTADE FT RLHRELADVWRDIDTDDQTRVVVIRGEGNGFSGGGDLGLVQQMAEDFEVRTRVWREARD FT LVYNIINCNKPIVSAMHGAAVGAGLVAGLLADISIAARDARIIDGHTRLGVAAGDHAAI FT VWPLLCGMAKAKYYLLLCDAVSGEEAERIGLVSLCVDRAELLSKAFEVAGRLAAGSQTA FT IRWTKYALNNWLRMAGPSFDTSLALEFMGFAGPDVHEGIKSLREKRAPDFR" FT misc_feature 45138..45659 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT misc_feature 45408..45470 FT /note="ScanRegExp hit to PS00166, Enoyl-CoA FT hydratase/isomerase signature." FT CDS complement(45961..46698) FT /transl_table=11 FT /locus_tag="BP3305" FT /product="putative enoyl-CoA hydratase/isomerase" FT /note="Similar to Caulobacter crescentus enoyl-CoA FT hydratase/isomerase family protein cc0397 TR:Q9AB37 FT (EMBL:AE005712) (256 aa) fasta scores: E(): 4.8e-33, 46.41% FT id in 237 aa, and to Mus musculus peroxisomal FT 3,2-trans-enoyl-CoA isomerase PecI SW:PECI_MOUSE (Q9WUR2) FT (358 aa) fasta scores: E(): 4.6e-20, 34.13% id in 249 aa" FT /db_xref="GOA:Q7VU30" FT /db_xref="InterPro:IPR001753" FT /db_xref="UniProtKB/TrEMBL:Q7VU30" FT /protein_id="CAE43570.1" FT /translation="MNSLLTERDAAVLTLTINRPERRNALDTATYDALAAQLRAADADT FT GLAAVILTGAGDHFTAGNDLRDFQAERAAGDSPALRFLRALVDTDVPVLAAVEGHAVGV FT GVTLLQHCDFAFAAGTARLRMPFVALGLCPEGASSLLLPRLAGMRKAAEWLLQGRAFDA FT AEAHAAGLLTGVTEPGQALAAARAVAADLAAQPRQALRVSKRMLRQADRAAIHATLDHE FT AEQFRERLRSPEAQQAFARFFNK" FT misc_feature complement(46168..46662) FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT CDS complement(46695..47687) FT /transl_table=11 FT /locus_tag="BP3306" FT /product="conserved hypothetical protein" FT /note="Similar to many eg. Rhizobium meliloti hypothetical FT protein Smc02150 TR:CAC41942 (EMBL:AL591783) (336 aa) fasta FT scores: E(): 8.8e-66, 57.37% id in 312 aa" FT /db_xref="GOA:Q7VU29" FT /db_xref="InterPro:IPR004136" FT /db_xref="InterPro:IPR013785" FT /db_xref="UniProtKB/TrEMBL:Q7VU29" FT /protein_id="CAE43571.1" FT /translation="MNARDTAMPHPVVAELYASMTLPVVCSPMFIVSNPKLAIAQCVSG FT VMGSFPALNARPQSLLGDWLDEVEAGLAEHRRAHPDGIVAPYAVNQIIHQSNDRLEHDL FT DVCARHRVPYIITSLRAPGDLVAGVHAWGGKVFHDVTTVRHAEKALEAGVDGLILVCAG FT AGGHAGTLSPFALVSEVRRFYDGPLVLSGAITSGQGILAALATGADFAYMGTRFIATAE FT ANASEAYKQAIVDASASDVLYTPFFTGIPGNYLKASIVAAGLDPADLPAAEAASSNFGT FT TRAKPWKDIWGAGQGVGGIASVLPARELVASLRAEYAQAQARLGARNLG" FT CDS 47840..48463 FT /transl_table=11 FT /locus_tag="BP3307" FT /product="putative TetR-family trasncriptional regulator" FT /note="Similar to many eg. Rhodococcus spNCIMB 9784. FT transcriptional repressor CamPR TR:AAK50621 (EMBL:AF323755) FT (206 aa) fasta scores: E(): 4.3e-13, 30.69% id in 202 aa" FT /db_xref="GOA:Q7VU28" FT /db_xref="InterPro:IPR001647" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR011075" FT /db_xref="InterPro:IPR012287" FT /db_xref="InterPro:IPR015893" FT /db_xref="UniProtKB/TrEMBL:Q7VU28" FT /protein_id="CAE43572.1" FT /translation="MADAPAPAPKRARAGRPPTLAAPRERILEEAARLFARSGYENSSV FT ADLAAAIGVSKAALYHYFPTKQDIYDAIILETLAGLLQAVTREVERQHEACERLRAFMV FT GHARYFARHHEQFVTMLIGYSGMALPERADAAQLRDRYEQLLRDLLEQGMAAGTLRRLD FT VAATGRAVLSMLNWMVRWYKPGQGDSAEQIADGYYDLLFNGLRI" FT misc_feature 47918..48058 FT /note="HMMPfam hit to PF00440, Bacterial regulatory FT proteins, tetR family" FT misc_feature 47954..48046 FT /note="ScanRegExp hit to PS01081, Bacterial regulatory FT proteins, tetR family signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 48508..49656 FT /transl_table=11 FT /locus_tag="BP3308" FT /product="putative acyl-CoA dehydrogenase" FT /note="Similar to many eg. Pseudomonas aeruginosa probable FT acyl-CoA dehydrogenase Pa1631 TR:Q9I391 (EMBL:AE004590) FT (384 aa) fasta scores: E(): 2.1e-106, 70.6% id in 381 aa, FT and to Clostridium acetobutylicum acyl-CoA dehydrogenase, FT short-chain specific Bcd or Cac2711 SW:ACDS_CLOAB (P52042) FT (379 aa) fasta scores: E(): 3.3e-46, 38.91% id in 370 aa" FT /db_xref="GOA:Q7VU27" FT /db_xref="HSSP:1JQI" FT /db_xref="InterPro:IPR006089" FT /db_xref="InterPro:IPR006090" FT /db_xref="InterPro:IPR006091" FT /db_xref="InterPro:IPR006092" FT /db_xref="InterPro:IPR009075" FT /db_xref="InterPro:IPR009100" FT /db_xref="InterPro:IPR013764" FT /db_xref="InterPro:IPR013786" FT /db_xref="UniProtKB/TrEMBL:Q7VU27" FT /protein_id="CAE43573.1" FT /translation="MALDNETLNLLLDAVRRFVNDRLVPAENELAETGRIPDEIVQEMR FT DLGLFGLSIAADYGGLGLTMEEEVRVVFELGQTSPAFRSLAGTNIGIGSQSIVLAGTDD FT QRQRFLPKLASGELIGSFALTEPDAGSDAMALRTSAVRDGDHYVLNGTKRFITNAPVAG FT LFSVMARTAPERRADSISCFLVEAGTPGVTLGKPDKKMGQAGALTCDVVFDNCRVPAEA FT LLGGKEGTGFRTSMRVLDKGRLHIAALCVGIAERLVRDAVRYALERKQFGQPIAEFQLV FT QAMIADSQTELYAARSMVLDAARKRDLGQNVTMEAACSKLYATEMVGRVADRAVQIHGG FT AGYISEYAVERFYRDVRLFRIFEGTSQIQQLVIARETLKAYA" FT misc_feature 48520..49632 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT misc_feature 48874..48912 FT /note="ScanRegExp hit to PS00072, Acyl-CoA dehydrogenases FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 49513..49572 FT /note="ScanRegExp hit to PS00073, Acyl-CoA dehydrogenases FT signature 2. Confirmed by InterPro eMOTIF pattern match." FT CDS join(49769..50482,50478..50993) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3309" FT /product="conserved hypothetical protein (pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 238. The frameshift occurs within FT a dimeric tract of (GCGCC)2. The sequence has been checked FT and believed to be correct. Similar to members of a family FT of enzymes with diverse functions eg. Pseudomonas FT aeruginosa hypothetical protein Pa0446 TR:Q9I672 FT (EMBL:AE004482) (407 aa) fasta scores: E(): 4.3e-103, FT 65.09% id in 404 aa, and to Acinetobacter spNCIMB9871. FT L-carnitine dehydrogenase-like protein Orf17 TR:BAB61747 FT (EMBL:AB026669) (405 aa) fasta scores: E(): 6e-95, 61.97% FT id in 384 aa. Also similar to BP0143 (57.143% identity in FT 399 aa overlap), and to BP1779 (57.644% identity in 399 aa FT overlap), and to BP2559 (42.394% identity in 401 aa FT overlap)." FT /db_xref="PSEUDO:CAE43574.1" FT misc_feature join(50006..50482,50478..50582) FT /note="HMMPfam hit to PF02515, CAIB/BAIF family" FT variation 50471..50480 FT /note="(GCGCC)2 in pertussis; (GCGCC)3 in parapertussis and FT bronchiseptica" FT CDS 51077..51898 FT /pseudo FT /transl_table=11 FT /gene="paaH" FT /locus_tag="BP3310" FT /product="putative 3-hydroxyacyl-CoA dehydrogenase FT (pseudogene)" FT /EC_number="1.1.1.157" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481. Similar to Pseudomonas aeruginosa probable FT 3-hydroxyacyl-CoA dehydrogenase Pa1628 TR:Q9I394 FT (EMBL:AE004590) (509 aa) fasta scores: E(): 4.6e-60, 64.31% FT id in 269 aa, and to Escherichia coli probable FT 3-hydroxybutyryl-CoA dehydrogenase PaaH or b1395 FT SW:PAAH_ECOLI (P76083) (475 aa) fasta scores: E(): 1.1e-35, FT 45.21% id in 261 aa" FT /db_xref="PSEUDO:CAE43575.1" FT misc_feature 51095..51889 FT /note="HMMPfam hit to PF00725, 3-hydroxyacyl-CoA FT dehydrogenase, C-terminal domain" FT repeat_region 51878..51909 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 51878..52930 FT CDS 51980..52930 FT /transl_table=11 FT /locus_tag="BP3311" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7VU26" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR012337" FT /db_xref="UniProtKB/TrEMBL:Q7VU26" FT /protein_id="CAE43576.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQVPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHT" FT misc_feature 52361..52894 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(52903..52930) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT tRNA 53093..53167 FT /note="tRNA Arg anticodon CCG, Cove score 66.19" FT repeat_region 53181..53209 FT /note="Inverted repeat for IS481-like element encoding FT BP3312" FT repeat_region 53181..54221 FT /note="IS1002 element" FT CDS 53271..54221 FT /transl_table=11 FT /locus_tag="BP3312" FT /product="transposase" FT /note="transposase for IS1002 element" FT /db_xref="GOA:Q7VU25" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR012337" FT /db_xref="UniProtKB/TrEMBL:Q7VU25" FT /protein_id="CAE43577.1" FT /translation="MNNHKHARLTRLGRALLVNRVMQQNWTMRQASQAAGVSLRTGYKW FT LARFRSEGLDGLLDRSSRPHRSPKACAPEQVEHFAQQRRQRLPLWRIAREAGRSLATVA FT RYMERIGLSRLASLEPPAPVRRYERASPGELLHIDTKRLGRIRGVGHRITGDRAQNRNR FT GIGWDAVHLAIDDFSRVSFARILDDEGGDQCAEFLRQATAYYASLGVRIDRVMTDNGSG FT YVSRTFRAVCVELGIRHIRTRPYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQ FT PFIDRYNWYRPHSALGHQPPITRIPDVNNLLRIDT" FT misc_feature 53652..54176 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(54193..54221) FT /note="Inverted repeat for IS481-like element encoding FT BP3312" FT repeat_region 54218..54249 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 54218..55270 FT CDS 54320..55270 FT /transl_table=11 FT /locus_tag="BP3313" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q84CT8" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR012337" FT /db_xref="UniProtKB/TrEMBL:Q84CT8" FT /protein_id="CAE43578.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT misc_feature 54701..55234 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(55239..55270) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 55537..56064 FT /transl_table=11 FT /locus_tag="BP3314" FT /product="putative blue copper protein" FT /note="Similar to Rhizobium meliloti putative copper FT oxidase, possibly exported Sma1041 TR:AAK65222 FT (EMBL:AE007246) (170 aa) fasta scores: E(): 9.2e-17, 43.75% FT id in 160 aa, and to Aeromonas veronii bvSobria. CopC FT associated with copper tolerance TR:Q9L912 (EMBL:AF187849) FT (177 aa) fasta scores: E(): 5.4e-16, 46.52% id in 144 aa" FT /db_xref="GOA:Q7VU24" FT /db_xref="InterPro:IPR000923" FT /db_xref="InterPro:IPR008972" FT /db_xref="UniProtKB/TrEMBL:Q7VU24" FT /protein_id="CAE43579.1" FT /translation="MTQSDQRGSNMRARVYAVRMAAAACGISFGAAASGAHGGGHGGGH FT GAATAGATAIGKPGVASKASRTVNVDMTDAMRFTPDQIEVKAGETVRFKVTNSGKIRHE FT MVLDTDADLGAHYQMMLKDPGMRHEEPNSVSLDAGKSGEIVWQFDKAGRVAFGCLEPGH FT YPAGMKGAVSVK" FT misc_feature 55537..55635 FT /note="Signal peptide predicted for BP3314 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.963) with cleavage site FT probability 0.422 between residues 33 and 34" FT misc_feature 55573..55641 FT /note="1 probable transmembrane helix predicted for BP3314 FT by TMHMM2.0 at aa 13-35" FT misc_feature 55990..56040 FT /note="ScanRegExp hit to PS00196, Type-1 copper (blue) FT proteins signature." FT CDS 56107..57882 FT /transl_table=11 FT /gene="copA" FT /locus_tag="BP3315" FT /product="copper resitance protein" FT /note="Similar to Ralstonia metallidurans CopA protein FT TR:Q9F3S1 (EMBL:AJ278983) (614 aa) fasta scores: E(): FT 1.2e-133, 59.63% id in 602 aa, and to Pseudomonas syringae FT copper resistance protein A precursor CopA SW:COPA_PSESM FT (P12374) (609 aa) fasta scores: E(): 2.8e-95, 61.85% id in FT 603 aa, and to Escherichia coli copper resistance protein A FT precursor PcoA SW:PCOA_ECOLI (Q47452) (605 aa) fasta FT scores: E(): 5.4e-91, 59.05% id in 613 aa" FT /db_xref="GOA:Q8GP35" FT /db_xref="HSSP:1HFU" FT /db_xref="InterPro:IPR001117" FT /db_xref="InterPro:IPR002355" FT /db_xref="InterPro:IPR006311" FT /db_xref="InterPro:IPR006376" FT /db_xref="InterPro:IPR008972" FT /db_xref="InterPro:IPR011706" FT /db_xref="InterPro:IPR011707" FT /db_xref="InterPro:IPR017909" FT /db_xref="UniProtKB/TrEMBL:Q8GP35" FT /protein_id="CAE43580.1" FT /translation="MSRAVSNQRRRFVQGLAGGGVLAGLGLWRQAAWAQPGAAQPEVLS FT GTEFNLEIGRTPANFTGAARMATTVNGSIPAPILRWREGDTVTLRVTNRLDEDTSIHWH FT GILLPTGMDGVPGLSFPGIRPGETFTYRFQVRQSGTYWYHSHSGFQEQTGLYGAIVIEP FT RRADPVRAERDHVVLLSDWTDEDPMSVFRKLKVMPDYYNYIQPTVDNLIDDARKQGWAS FT TLGERLMWQQMRMNQTDLADVSGATYTYLANGKSPAGNWTGLFKPGERVRLRFINGSAM FT TYFDVRIPGLKMTVVAADGLPVRPVEVDEFRIAVAETYDVIVEPAEDRAYTIFSQAMDR FT SGYARATLAPREGMQAEVPALDPVQVLTMMDMGMAHDMPGMDHGAAGQQGAAMDHGAMG FT GMDHAAMGHGSSEASGGMVEVRHPYPAEHGPANSMLPDIVTTRLDDPGVGLRDNGRKVL FT TYADLRSMVEPEDNRAPTREIELHLTGNMDRYMWSFNGLKFSQAKPIVLKYGERVRFVL FT VNDTMMTYPIHLHGLWSDLESPDGNFQVRKHTISLNPAQRISYRVSADARGNWAYHCHL FT LYHMEAGMFRAVVVE" FT misc_feature 56107..56208 FT /note="Signal peptide predicted for BP3315 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.985 between residues 34 and 35" FT misc_feature 56191..56598 FT /note="HMMPfam hit to PF00394, Multicopper oxidase" FT misc_feature 56521..56583 FT /note="ScanRegExp hit to PS00079, Multicopper oxidases FT signature 1." FT misc_feature 57496..57879 FT /note="HMMPfam hit to PF00394, Multicopper oxidase" FT misc_feature 57808..57870 FT /note="ScanRegExp hit to PS00079, Multicopper oxidases FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 57823..57858 FT /note="ScanRegExp hit to PS00080, Multicopper oxidases FT signature 2. Confirmed by InterPro eMOTIF pattern match." FT CDS 57890..58756 FT /transl_table=11 FT /gene="copB" FT /locus_tag="BP3316" FT /product="copper resistance protein" FT /note="Similar to Pseudomonas aeruginosa copper resistance FT protein B precursor PcoB or Pa2064 TR:Q9I251 FT (EMBL:AE004633) (325 aa) fasta scores: E(): 3.3e-41, 42.76% FT id in 318 aa, and to Pseudomonas syringae copper resistance FT protein B precursor CopB SW:COPB_PSESM (P12375) (328 aa) FT fasta scores: E(): 4.2e-39, 42.66% id in 300 aa, and to FT Escherichia coli copper resistance protein B precursor PcoB FT SW:PCOB_ECOLI (Q47453) (296 aa) fasta scores: E(): 1.3e-34, FT 39.66% id in 295 aa" FT /db_xref="GOA:Q7VU23" FT /db_xref="InterPro:IPR007939" FT /db_xref="UniProtKB/TrEMBL:Q7VU23" FT /protein_id="CAE43581.1" FT /translation="MPNFSIDRKRLAGMAASLGLAAAAAAASAWAQAPAMDHGSMPGMD FT HGAAPAPAIGALPSSDGAGDQSYAAYGIHSHMMDDMVTSQLLFDKLGMTYDRDRRTGLQ FT WDGQFWVGRDLDKLWIKSEGERVGGRSDGKVEAFWNRTISPFWDLQVGARRDFGTGPKR FT NWGAIGLQGVAPYNIETEVTAYVGGSGRTALALKAEYDLLLTQRLVLTPEIEASVYGKD FT DKARGIGAGLSDASFSLRLRYEITREVAPYVGVSFGRKFGKTASYASEEGESRSERAIM FT AGVRIWF" FT misc_feature 57890..57982 FT /note="Signal peptide predicted for BP3316 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.921 between residues 31 and 32" FT misc_feature 57923..57991 FT /note="1 probable transmembrane helix predicted for BP3316 FT by TMHMM2.0 at aa 12-34" FT CDS complement(58763..59488) FT /transl_table=11 FT /locus_tag="BP3317" FT /product="putative enoyl-CoA hydratase/isomerase" FT /note="Similar to Mycobacterium tuberculosis probable FT enoyl-CoA hydratase EchA6 or Rv0905 or Mt0928 or mtcy31.33 FT SW:ECH6_MYCTU (Q10533) (243 aa) fasta scores: E(): 2.9e-11, FT 34.41% id in 215 aa" FT /db_xref="GOA:Q7VU22" FT /db_xref="InterPro:IPR001753" FT /db_xref="UniProtKB/TrEMBL:Q7VU22" FT /protein_id="CAE43582.1" FT /translation="MSASLPLTITRQPAAWTFTLSRPEKRNALSAELVEALIDGVDAAH FT REQVPLLVFAGAGRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAH FT GRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVLGTRRFRDIVGADQALSILGSARA FT FDADEARRIGFVRDCAAQAQWPALIDAAAEAATALDPATRATLHRVLRDDHDDADLAAL FT ARSAAQPGFKARIRDYLAQ" FT misc_feature complement(58949..59443) FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT CDS complement(join(59494..59553,59550..60650)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3318" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 367. The frameshift occurs within FT a dimeric tract of (GCCC)2. The sequence has been checked FT and believed to be correct. Similar to members of a family FT of enzymes with diverse functions eg. Thermoplasma FT volcanium L-carnitine dehydratase tvg1215416 TR:Q979H5 FT (EMBL:AP000995) (399 aa) fasta scores: E(): 1.1e-57, 39.26% FT id in 382 aa, and to Drosophila melanogaster Cg10877 FT protein cg10877 TR:Q9VDL4 (EMBL:AE003731) (441 aa) fasta FT scores: E(): 1.2e-48, 35.82% id in 388 aa" FT /db_xref="PSEUDO:CAE43583.1" FT variation complement(59550..59557) FT /note="(GCCC)2 in pertussis; (GCCC)3 in parapertussis and FT bronchiseptica" FT misc_feature complement(59874..60440) FT /note="HMMPfam hit to PF02515, CAIB/BAIF family" FT CDS complement(60667..61461) FT /transl_table=11 FT /locus_tag="BP3319" FT /product="putative IclR-family transcriptional regulator" FT /note="Similar to Escherichia coli transcriptional FT regulator KdgR or b1827 SW:KDGR_ECOLI (P76268) (263 aa) FT fasta scores: E(): 7.8e-25, 37.94% id in 253 aa, and to FT Pectobacterium carotovorum subspcarotovorum. KdgR TR:Q9RB25 FT (EMBL:AF135395) (263 aa) fasta scores: E(): 1.2e-21, 35.17% FT id in 253 aa" FT /db_xref="GOA:Q7VU21" FT /db_xref="InterPro:IPR005471" FT /db_xref="InterPro:IPR014757" FT /db_xref="UniProtKB/TrEMBL:Q7VU21" FT /protein_id="CAE43584.1" FT /translation="MRCKGIRHMDKTLLKGLTVLEAISRLDGATPTLDQIAEEIGLTRS FT NTHRTLQTLAHAGYVRRDPATGSYQCTLKLFELGARQLASLDARKLAPPFMDELARLTN FT ETVHLSVLDGLDVVYVDKLDSPQPLLAYSTVGGRAPAYAVATGKALLACQTADYLDHYG FT AAIKRHTEDTHVSLLALKQELADVNRIGYAINRGEWRQGIGGIAAPIFNGLDKAVAALG FT ISGPLERLTNQKMREYAPLVQQAARQLSAHMGYRGGYFGGAA" FT misc_feature complement(60706..61257) FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator" FT CDS 61751..62341 FT /transl_table=11 FT /locus_tag="BP3320" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2602 TR:Q9I0N5 (EMBL:AE004689) (201 aa) fasta FT scores: E(): 2.3e-38, 55.31% id in 188 aa" FT /db_xref="GOA:Q7VU20" FT /db_xref="InterPro:IPR010300" FT /db_xref="InterPro:IPR011051" FT /db_xref="UniProtKB/TrEMBL:Q7VU20" FT /protein_id="CAE43585.1" FT /translation="MSERLLNTVVALGQLVERTGLQEAAILAQARQLIAGLVAHDDWLP FT DEMAQPHPEYYRQYLLYGDPRDRYSLVSFVWGPGQKTPVHDHTVWGVIGMLRGAETDQP FT FRRAADGRLAPEGPGKVLRPGDVACVSPSIGDIHQVSNAYDDRVSISIHLYGGNIGRIR FT RSVYDPQTGASKAFVSGYSNAMTPNLWAAPNAG" FT CDS complement(62375..63703) FT /transl_table=11 FT /locus_tag="BP3321" FT /product="putative amidase" FT /note="Similar to Rhizobium meliloti putative amidase FT Sma1377 TR:AAK65414 (EMBL:AE007262) (471 aa) fasta scores: FT E(): 1.2e-38, 35.2% id in 446 aa, and to Pseudomonas putida FT amidase SW:AMID_PSEPU (O69768) (466 aa) fasta scores: E(): FT 3.9e-24, 37.5% id in 456 aa" FT /db_xref="GOA:Q7VU19" FT /db_xref="InterPro:IPR000120" FT /db_xref="UniProtKB/TrEMBL:Q7VU19" FT /protein_id="CAE43586.1" FT /translation="MLTIAALASAYRTRQTTPSATLRDLLDRIAASPLNSFISVDPETV FT MRQAADADAAFAGGAPAGALHGIPVAVKDLIDVAGMRTTMGSQQYANQASAERDAQVVA FT RLRAEGAIIVGKTNTHEFAYGPTGDRSYFGAACNPRDPARMTGGSSSGSAAALGAGLCA FT AALGTDTSASIRLPAALCGVVGLKPTYDLLPRAGAFDLSQTLDHVGPMSATVRDNAVLL FT DALAGQPAHSYARLAGQSVRGRTVGLATGFYLDYLDAPVRQALEQAQEAFRQAGAQVVP FT IEIAQVQAIYEAQQLVLKTEAYARHLRALTTNAPYQDEVRARLLTGADVLAVDYLQAMA FT MRTVARRAFDEALAQVDVLLCPTCGLTAPLRDQRTTALDGQEYSTTWLLTRLTAPTNLS FT GHPSLSVPFGADSQGLPISMQLIGRHLDEAVLYQFGQALEDAA" FT misc_feature complement(62408..63646) FT /note="HMMPfam hit to PF01425, Amidase" FT misc_feature complement(63353..63376) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(63778..64923) FT /transl_table=11 FT /locus_tag="BP3322" FT /product="putative binding-protein-dependent transport FT protein" FT /note="Similar to Streptococcus pneumoniae R6 ABC FT transporter substrate-binding protein-branched chain amino FT acid transport livJ TR:AAK99463 (EMBL:AE008443) (386 aa) FT fasta scores: E(): 3.5e-30, 33.76% id in 388 aa, and to FT Salmonella typhimurium leucine-specific binding protein FT precursor livk or livC SW:LIVK_SALTY (P17216) (369 aa) FT fasta scores: E(): 4.2e-22, 27.4% id in 354 aa" FT /db_xref="GOA:Q7VU18" FT /db_xref="InterPro:IPR000709" FT /db_xref="InterPro:IPR001828" FT /db_xref="UniProtKB/TrEMBL:Q7VU18" FT /protein_id="CAE43587.1" FT /translation="MIAFAPRTLAVASIAATVALAGCGQKEEQAAAGATPLRIGIIESV FT TGPAASYGDAHNKGTRLAVEEINKAGGFNGVPLEVHGEDDKSDPATSINAAKKLITQRK FT VDAIVGSAASLVTIAFSKENEKYKVPLVNGMAGSPIITEQGFQYTWRIKITDNQLDTKA FT IEHYVQNKNARKVAFLAENSDYGKPPTKAAADRARELGAEVVAYEEYNRGETDFKAQLT FT NIRDRAPDVLFVHGYYTEGSIIARQIRELGLKTQLIVNEGQGVPKFQELAGAAAEGAVF FT PTTWLPGLSDARSKQFETAYQARYNSLPGAFDAGSYEAVYTVVEAARKGGGTKPEQIQA FT GLAQLQGFETLLGPVRFDKKNQNDGSIRLARFNNGKIEPLQ" FT misc_feature complement(64855..64887) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature complement(64861..64923) FT /note="Signal peptide predicted for BP3322 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.941) with cleavage site FT probability 0.428 between residues 21 and 22" FT repeat_region 64933..64964 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 64933..65985 FT CDS 65035..65985 FT /transl_table=11 FT /locus_tag="BP3323" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR012337" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE43588.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 65416..65949 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(65954..65985) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 66133..66693 FT /pseudo FT /transl_table=11 FT /locus_tag="BP3324" FT /product="putative outer membrane protein (pseudogene)" FT /note="Similar to Agrobacterium tumefaciens strC58 FT Agr_c_4934p TR:AAK88440 (EMBL:AE008185) (220 aa) fasta FT scores: E(): 1.1e-16, 43.42% id in 152 aa, and to Rhizobium FT meliloti hypothetical transmembrane protein Smc00354 FT TR:CAC41711 (EMBL:AL591783) (221 aa) fasta scores: E(): FT 3.5e-16, 42.48% id in 153 aa" FT /db_xref="PSEUDO:CAE43589.1" FT misc_feature 66370..66657 FT /note="HMMPfam hit to PF00691, OmpA family" FT CDS 66717..67094 FT /transl_table=11 FT /locus_tag="BP3325" FT /product="putative pterin-4-alpha-carbinolamine FT dehydratase" FT /note="Similar to many (including eukaryotic proteins) eg. FT Caulobacter crescentus putative FT pterin-4-alpha-carbinolamine dehydratase cc0245 FT SW:PHS_CAUCR (Q9ABI2) (94 aa) fasta scores: E(): 3.5e-21, FT 64.44% id in 90 aa, and to Xenopus laevis FT pterin-4-alpha-carbinolamine dehydratase PcbD or DcoH FT SW:PHS_XENLA (Q91901) (103 aa) fasta scores: E(): 2.2e-17, FT 54.44% id in 90 aa, and to Gallus gallus FT pterin-4-alpha-carbinolamine dehydratase PcbD or DcoH FT SW:PHS_CHICK (O73930) (103 aa) fasta scores: E(): 2.5e-17, FT 54.44% id in 90 aa" FT /db_xref="GOA:Q7VU17" FT /db_xref="InterPro:IPR001533" FT /db_xref="UniProtKB/Swiss-Prot:Q7VU17" FT /protein_id="CAE43590.1" FT /translation="MPAGGRGRGEFAMSTEFPMRIGAEVALPALQGWNAAAGRDAIEKR FT YRFDNFNAAFGFMARVAMFAEKMDHHPEWRNVYNRVDVTLTTHDAGGVTELDVRMAQFM FT DEAAGRLGATGLPARADQPRT" FT misc_feature 66768..67043 FT /note="HMMPfam hit to PF01329, Pterin 4 alpha carbinolamine FT dehydratase" FT CDS complement(67079..67780) FT /transl_table=11 FT /locus_tag="BP3326" FT /product="putative inner membrane protein" FT /note="No significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VU16" FT /protein_id="CAE43591.1" FT /translation="MAFGRSQRQVFKPSVYQPGKRTRRMPRWLVLLLVGIALGAGGVLF FT LQTNYGPQRLTVEQSEQLHTELSAANLERQRLQTQLDEAIGQRDANKSTHEQLTTDLAQ FT ARTRIDTLNQELLLFQDAMPPDPRGGDIGVRSAVFKRQPGQLSYQVLIMRENHAGPAFK FT GNVTLAIEGNYANGRRGTLTPDPLALDLQRYNNTQGVLPLPDGFTPRSVTIRVLDGQQK FT QHAMRIYYVRG" FT misc_feature complement(67631..67696) FT /note="1 probable transmembrane helix predicted for BP3326 FT by TMHMM2.0 at aa 28-50" FT misc_feature complement(67643..67780) FT /note="Signal peptide predicted for BP3326 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.773) with cleavage site FT probability 0.492 between residues 46 and 47" FT CDS complement(67924..68616) FT /transl_table=11 FT /locus_tag="BP3327" FT /product="putative nucleotidyl transferase" FT /note="Similar to many eg. Neisseria meningitidis putative FT sugar-phosphate nucleotidyl transferase nma0615 TR:Q9JVZ0 FT (EMBL:AL162753) (231 aa) fasta scores: E(): 2.4e-43, 58.55% FT id in 222 aa" FT /db_xref="GOA:Q7VU15" FT /db_xref="HSSP:1H5R" FT /db_xref="InterPro:IPR005835" FT /db_xref="UniProtKB/TrEMBL:Q7VU15" FT /protein_id="CAE43592.1" FT /translation="MRAMILAAGRGERMRPLTDTTPKPLLAVGGKPLIVWHIERLVAAG FT LRDIVINHAWLGQRIVDHLGDGGAYGARLHYSAEAAALETAGGIAQALPLLGDAPFLVI FT NGDIWCDWDPAQARRQAAALDAAGAQAWLLLVDNPPQHPQGDFRLEDDGRVADDGAPKL FT TFAGIGLYRPALFDPVARGSAAPLAPLLRQAMARRAVIGARHAGRWTDVGTPQRLAALD FT GQLRPEGT" FT misc_feature complement(67933..68613) FT /note="HMMPfam hit to PF00483, Nucleotidyl transferase" FT CDS complement(68616..69719) FT /transl_table=11 FT /locus_tag="BP3328" FT /product="conserved hypothetical protein" FT /note="Similar to many eg. Pseudomonas aeruginosa FT hypothetical protein Pa0596 TR:Q9I5U1 (EMBL:AE004496) (338 FT aa) fasta scores: E(): 1.9e-52, 45.85% id in 338 aa" FT /db_xref="InterPro:IPR002575" FT /db_xref="InterPro:IPR011009" FT /db_xref="UniProtKB/TrEMBL:Q7VU14" FT /protein_id="CAE43593.1" FT /translation="MPGTSLPIRGRRDPETIETRCLNNDQDSRLALIHAWLQTLPGSLG FT LRPETMEPASSDASFRRYFRLQAAAGTLIVMDAPPPHEDVRPFVHIDGLLREAGVNVPE FT IVAQDAGQGLLLLSDLGQDTFYQRIRAGISDAQLQSMYRDTLATLVRLQQASTAGLPAY FT DGARLAAELELFPEWYVGRHHGVTLDDKTAAALRQIFGLLAAEGDTGHRVLVHRDFHSP FT NLMVCDEPRYGPNPGVIDFQDALAGPLTYDLASLVTDARTTWEEPQQLDWAIRYWELAR FT AAGLPVDADFAQFHRAYEWMGLQRNLRILGVFARLNHRDGKSIYLSHMPRVSGYVRQVA FT QRYGAFAPLLRLLDKLDDRQVQVGYTF" FT CDS 69829..72201 FT /transl_table=11 FT /locus_tag="BP3329" FT /product="putative outer membrane (permeability) protein" FT /note="Similar to Xylella fastidiosa organic solvent FT tolerance precursor xf0837 TR:Q9PF41 (EMBL:AE003923) (792 FT aa) fasta scores: E(): 2.4e-46, 30.18% id in 815 aa, and to FT Escherichia coli organic solvent tolerance protein FT precursor Imp or OstA or b0054 SW:OSTA_ECOLI (P31554) (784 FT aa) fasta scores: E(): 4e-40, 26.97% id in 812 aa" FT /db_xref="GOA:Q7VU13" FT /db_xref="InterPro:IPR007543" FT /db_xref="UniProtKB/Swiss-Prot:Q7VU13" FT /protein_id="CAE43594.1" FT /translation="MRMLRWLILSAFSVAGAVQAQGNQDSAAASAPSASIGAPVLRTSP FT GLRVHRLPDEKIPAFMEADQISGDPDSEVTLTGNAQVRRVDGIIKGDRINYRRDTGDVD FT VQGSARMLRDGTLITGPSARLNVDTYSGEIQEPNFWIGASGGTAQARHADIFSKSQMRL FT SQVTYSGCPCPKPSWYIKADTVDLDFDENEGVARNGVLYFKDVPILASPYLTFPVKKER FT KSGFLMPTYGTTSNSGFDISLPYYFNLAPNYDLTLVPRYLSKRGAQLGGEFRYLGSGYR FT GVAIGTYLPDDNETGRDRWMYRTYHRQLLGNGFYTDWDIAGASDDNYFRDISELGLNTA FT STTYLPRRGRVGWSSTYWQTYAQVYKYQTLQDPDAPLAPPYDKVPELWLKGARYDWGGF FT DAEWVSTAVRFQRSLLNGRRLGPDGDRLQTYPTVSYPIGRPGWFLVPKVGVHYTQYRTD FT WYNRDWNRIGLSNYKRTESRTVPIMSLDAGMIFERDASLFGKAATQTLEPRLYYLRVPY FT RDQSALPVYDTTLADFSFDQAFQENIYTGGWDRIANANQLTAALTTRWLDANTGFERLS FT LSAAQRIYFQDQEVTLPAEQPRKNVRSDFLVGATAALTDTLITDVAAQYNPYDNKWSRG FT MVSARWSPQRLTTVAVAYRYQRDPLPGISYQPQGQNQVSLAVQWPIHRRWYGVGRVDYS FT LRSEPATAAAAEQSPRVTQAIAGLEYKGDCCWVGRVVYQRYAVSAADTNTALFFQLELT FT GLGALGTDPISLLNRSIPGYQSVVPPTPTGTTFERYE" FT misc_feature 69829..69888 FT /note="Signal peptide predicted for BP3329 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.919 between residues 20 and 21" FT CDS 72198..73757 FT /transl_table=11 FT /locus_tag="BP3330" FT /product="putative peptidyl-prolyl cis-trans isomerase" FT /note="Similar to Xylella fastidiosa peptidyl-prolyl FT cis-trans isomerase xf0838 TR:Q9PF40 (EMBL:AE003923) (464 FT aa) fasta scores: E(): 9.3e-12, 31.37% id in 510 aa, and to FT Escherichia coli, and survival protein SurA precursor or FT b0053 or z0062 or ecs0058 SW:SURA_ECOLI (P21202) (428 aa) FT fasta scores: E(): 2e-07, 33.18% id in 461 aa. Thought to FT assist the correct folding of outer membrane proteins." FT /db_xref="GOA:Q7VU12" FT /db_xref="HSSP:1ZK6" FT /db_xref="InterPro:IPR000297" FT /db_xref="InterPro:IPR015391" FT /db_xref="UniProtKB/Swiss-Prot:Q7VU12" FT /protein_id="CAE43595.1" FT /translation="MMRSLHSLRRMSGTVLALMLAAGLPLSAAQAQPAKPAPKGDQKPA FT TPAPSEQFVDGIAAIVNKDVITLREVREASKLASADLQKRGIQVPDERTLQKQVLQRLI FT MERLERQEADRMGIRVDEAQVDQAINMIASRNKITPAAMRAEIEKSGVTWEQYRKSLRD FT DIRMDRLRQRAVDANIIISDAEVDAFLKDQERNPAAAQATRAPAPQQPQPQPRQPAQSG FT PAMLVLAQILVRVPEGSSPDQVAALRKKAEGLLARAKKGDDFASLAAANSDGPEALQGG FT MMGARPLDGWPDLFVKAAGSLSAGQVSGLVQSGNGFHILKVVDRAGGGQPAQAARPAPA FT PAPQQPSSFQEGPSVAAPQGPVRVTQTHARHILIKTSTVMTDDQARQRLEQIRERLQGG FT AVKFEDMARQYSQDSTAPQGGDLGWVNPGDTVPPFEAAMNALQPNEISPPMLSPFGWHL FT IQVLERREHDVSDEVQRMRARQLLFERRAVPAFEDWLEQLRSQAFIDNRLEKQERLEQN FT NR" FT misc_feature 72198..72290 FT /note="Signal peptide predicted for BP3330 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.804 between residues 31 and 32" FT misc_feature 72864..73169 FT /note="HMMPfam hit to PF00639, PPIC-type PPIASE domain." FT misc_feature 73287..73586 FT /note="HMMPfam hit to PF00639, PPIC-type PPIASE domain." FT CDS 73782..74579 FT /transl_table=11 FT /gene="ksgA" FT /gene_synonym="rsmA" FT /locus_tag="BP3331" FT /product="dimethyladenosine transferase" FT /EC_number="2.1.1.-" FT /note="Similar to Escherichia coli dimethyladenosine FT transferase KsgA or RsmA or b0051 SW:KSGA_ECOLI (P06992) FT (273 aa) fasta scores: E(): 9.9e-42, 47.52% id in 263 aa, FT and to Burkholderia sp KsgA, high level kasugamycin FT resistance protein TR:Q9RED9 (EMBL:AJ242786) (277 aa) fasta FT scores: E(): 9.1e-46, 54.1% id in 268 aa" FT /db_xref="GOA:Q7VU11" FT /db_xref="InterPro:IPR001737" FT /db_xref="InterPro:IPR011530" FT /db_xref="InterPro:IPR020596" FT /db_xref="InterPro:IPR020598" FT /db_xref="UniProtKB/Swiss-Prot:Q7VU11" FT /protein_id="CAE43596.1" FT /translation="MSAHQARKRFGQHFLTDESVVESIVRAIGPARDDRVVEIGPGLSA FT LTRPLLDRIDHLTAVEIDRDLAARLRRQYPAERLTVVEADALTVDFAQFGQGLRVVGNL FT PYNISSPLLFHLMGAAEQVRDQHFMLQREVIDRMVAEPGSGDYSRLSVMLQARYRMEKL FT FDVAPEAFDPPPRVVSAVVRMAPLPADRLRPASDAAFETVVARAFSQRRKMLRRVLDDW FT AALTPWDELGIAPTARAEEVGVAQFIGLADALLAAGAPGLARP" FT misc_feature 73815..74537 FT /note="HMMPfam hit to PF00398, Ribosomal RNA adenine FT dimethylase" FT CDS complement(74611..75756) FT /transl_table=11 FT /gene="garK" FT /locus_tag="BP3332" FT /product="glycerate kinase" FT /EC_number="2.7.1.31" FT /note="Similar to Escherichia coli glycerate kinase 2 GarK FT or b3124 SW:GRK2_ECOLI (P23524) (381 aa) fasta scores: E(): FT 2.8e-57, 49.6% id in 379 aa, and to Pseudomonas aeruginosa FT hypothetical protein Pa1052 TR:Q9I4S2 (EMBL:AE004537) (381 FT aa) fasta scores: E(): 1.6e-81, 68.09% id in 373 aa" FT /db_xref="GOA:Q7VU10" FT /db_xref="InterPro:IPR004381" FT /db_xref="InterPro:IPR018193" FT /db_xref="UniProtKB/TrEMBL:Q7VU10" FT /protein_id="CAE43597.1" FT /translation="MKIVIAPDSFKESLSAPDAAAAIARGVRQACPGAHTLCIPMADGG FT EGTVQAVLAATGGQWRETTVRGALGEPVRARWGWLPDDATAVIEMAAAAGLELAPPAQR FT DPLRACSHGVGELIRAALDAGARRLIVGLGGSATNDGGAGMLTALGVRWLDADGRALAP FT GGAALADVRQVDASGLDARLRGVVVEIASDVDNPLCGPHGASHTFGPQKGATPEQVRQL FT DAALAHMAEIVTRAGHPDQRAAPGADAAGGLGYAALAFLSARLRPGVEIVAELGQLAQA FT VAGATLVFTGEGRIDAQTLRGKTPAGVARIASAAGVPVVALAGSLGEGYQDLHAGGITA FT AFSLAPGPITLQQACEQAETLLAERARDIMQLWVAAGRRML" FT misc_feature complement(74623..75756) FT /note="HMMPfam hit to PF02595, Uncharacterized BCR, FT COG1929" FT misc_feature complement(74845..74868) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 75837..77303 FT /transl_table=11 FT /gene="pykA" FT /locus_tag="BP3333" FT /product="pyruvate kinase" FT /EC_number="2.7.1.40" FT /note="Similar to Escherichia coli pyruvate kinase II PykA FT or b1854 SW:KPY2_ECOLI (P21599) (479 aa) fasta scores: E(): FT 2.1e-96, 59.32% id in 477 aa" FT /db_xref="GOA:Q7VU09" FT /db_xref="HSSP:1E0T" FT /db_xref="InterPro:IPR001697" FT /db_xref="InterPro:IPR011037" FT /db_xref="InterPro:IPR015793" FT /db_xref="InterPro:IPR015794" FT /db_xref="InterPro:IPR015795" FT /db_xref="InterPro:IPR015813" FT /db_xref="InterPro:IPR018209" FT /db_xref="UniProtKB/TrEMBL:Q7VU09" FT /protein_id="CAE43598.1" FT /translation="MFSSERAYMPVLRRTKIVATLGPATSTPERLDGLIRAGMDVARLN FT FSHGSAQDHRERVRLVRELAAEQGRFVALMGDLQGPKIRIARFTDQQVTLQAGQPFTLS FT RSHSKEAGDATIVGIDYPELVQDCRPGDELLLDDGRVVLVVDSVGAEEVHTTVTVGGPL FT SNNKGINRRGGGLSAPSLTDKDRTDIKLAAEMELDYVAVSFPRYGADIDEARALLRAAG FT SQAWIIAKIERAEAVADDDALDALIRASDGVMVARGDLGVEVGDAELVGIQKRIIQHAR FT TLNKVVITATQMMESMVASPMPTRAEVSDVANAVLDYTDAVMLSAESASGQYPIEAVAA FT MARVCLGAEKHPTTTHSHHRLGETFTRCDETIALAAMYAANHFPGVKAIIALTESGHTP FT LIMSRIRSGVPIYCYSPHGPTQRRAALFRGVYTVPFAPAEYDPADLSNAAIDELKKRGR FT VAAGDWVILTKGDFYRDSGGTNGLKILKVE" FT misc_feature 75873..77297 FT /note="HMMPfam hit to PF00224, Pyruvate kinase, barrel FT domain" FT misc_feature 76509..76547 FT /note="ScanRegExp hit to PS00110, Pyruvate kinase active FT site signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS complement(77306..78535) FT /transl_table=11 FT /locus_tag="BP3334" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa5478 TR:Q9HT92 (EMBL:AE004960) (409 aa) fasta FT scores: E(): 6e-116, 78.18% id in 408 aa. C-terminus FT similar to Bacillus subtilis spore maturation protein B FT SpmB SW:SPMB_BACSU (P35158) (179 aa) fasta scores: E(): FT 3.4e-17, 41.61% id in 173 aa" FT /db_xref="GOA:Q7VU08" FT /db_xref="InterPro:IPR011415" FT /db_xref="InterPro:IPR011642" FT /db_xref="UniProtKB/TrEMBL:Q7VU08" FT /protein_id="CAE43599.1" FT /translation="MLNKLWLAFFLTAAAAALYRWLGLGEPDVFQAMVVSLFDMARVSV FT EVMVLLFGTLTLWLGFLRIAEAAGLVERLASLLGPLFARLMPEVPRGHPAIGLITLNFA FT ANGLGLDNAATPIGLRAMRELQSLNPNPDTASNAQILFLVLNASSLTLLPVTLFMFRAQ FT QGAADPTLIFLPILLATSASTLAGLLAVAFCQRLRLHDPVVLAWLGSAALALGAFMVML FT AGMSAAAIAALSSLLGNLTLFAVLLAFLVAGAWKKVPVYETFIAGAKDGFNIARDLLPY FT LVAMLCAIGVLRASGALDFALDGMRWLAHAAGWDTRFVDALPTALVKPFSGSAARAMML FT ETMSHFGVDSFPALLAAVMQGSTETTFYVLAVYFGSVGIVRARHAVGCALAADLAGVLA FT SIGVCYWFFG" FT misc_feature complement(join(77312..77377,77399..77464,77645..77701, FT 77783..77848,77861..77926,77954..78019,78050..78115, FT 78341..78406,78467..78520)) FT /note="9 probable transmembrane helices predicted for FT BP3334 by TMHMM2.0 at aa 5-23, 43-65, 140-162, 172-194, FT 203-225, 229-251, 278-297, 357-379 and 386-408" FT misc_feature complement(78488..78535) FT /note="Signal peptide predicted for BP3334 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.990) with cleavage site FT probability 0.522 between residues 16 and 17" FT CDS 78672..80693 FT /pseudo FT /transl_table=11 FT /locus_tag="BP3335" FT /product="N-terminal region of putative oxidoreductase FT (pseudogene)" FT /note="This CDS is disrupted by the insertion of IS481. The FT C-terminal region of this CDS is BP0040. Similar to FT Escherichia coli hypothetical protein YafH or b0221 FT SW:YAFH_ECOLI (Q47146) (794 aa) fasta scores: E(): FT 1.4e-137, 53.67% id in 654 aa, and to Homo sapiens acyl-CoA FT dehydrogenase, very-long-chain specific, mitochondrial FT precursor AcaDVl or VlcAD SW:ACDV_HUMAN (P49748) (655 aa) FT fasta scores: E(): 9.7e-08, 24.75% id in 614 aa" FT /db_xref="PSEUDO:CAE43600.1" FT misc_feature 78960..79265 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT misc_feature 79692..79916 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT CDS complement(80673..81623) FT /transl_table=11 FT /locus_tag="BP3336" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTC0" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR012337" FT /db_xref="UniProtKB/TrEMBL:Q7TTC0" FT /protein_id="CAE43601.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN" FT repeat_region 80673..80704 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(80673..81725) FT misc_feature complement(80709..81242) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT CDS complement(join(81716..82213,82215..82697)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3337" FT /product="putative gamma-glutamyltranspeptidase FT (pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element and has a frameshift following codon 178. FT Similar to Mycobacterium tuberculosis putative FT gamma-glutamyltranspeptidase Rv0773c or Mtcy369.18 FT TR:P71828 (EMBL:Z80226) (512 aa) fasta scores: E(): FT 2.5e-64, 56.03% id in 323 aa, and to Pseudomonas sp FT gamma-glutamyltranspeptidase precursor Ggt SW:GGT_PSESP FT (P36267) (575 aa) fasta scores: E(): 7.8e-23, 32.15% id in FT 339 aa" FT /db_xref="PSEUDO:CAE43602.1" FT misc_feature complement(join(81719..82213,82215..82637)) FT /note="HMMPfam hit to PF01019, FT Gamma-glutamyltranspeptidase" FT variation complement(82211..82216) FT /note="(C)6 in pertussis; (C)5 in parapertussis and FT bronchiseptica" FT CDS complement(join(82753..83325,83319..83636)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3338" FT /product="conserved hypothetical protein (pseudogene)" FT /note="Pseudogene. This CDS appears to contain a deletion FT that has lead to a shift in reading frame following codon FT 106. The sequence has been checked and is believed to be FT correct. Similar to Comamonas testosteroni Orf4 protein FT orf4 TR:Q9S155 (EMBL:AB024335) (325 aa) fasta scores: E(): FT 8.3e-18, 36.53% id in 323 aa." FT /db_xref="PSEUDO:CAE43603.1" FT variation complement(83321) FT /note="97 bp deletion in pertussis relative to FT parapertussis and bronchiseptica" FT CDS complement(83805..84599) FT /transl_table=11 FT /locus_tag="BP3339" FT /product="putative ABC transport ATP-binding subunit" FT /note="Similar to Escherichia coli ferrichrome transport FT ATP-binding protein FhuC or b0151 SW:FHUC_ECOLI (P07821) FT (265 aa) fasta scores: E(): 4.2e-19, 38.49% id in 239 aa" FT /db_xref="GOA:Q7VU07" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:Q7VU07" FT /protein_id="CAE43604.1" FT /translation="MNAPGLAIEGLGVAYGARTVIAGLSLGPLPHGTLTALLGPNGSGK FT STLLKAVAGLLPARGGAIALDGQRLDQADLAQRAQQVAYLPQGLPADVHLRVFESVLVA FT ARAHGGEAAGQIGPPAIAALLERLGIGHLALQFLDELSGGQKQLVGLAQALIRRPRVLL FT LDEPLSALDPNYQFHVMDLLCQETRDHGLITIAALHDINIALRHADQALLIRAGELAAA FT GEPAAVIDAPMLARVYGIQARVERCSRGHPHVLVDGVAGPVR" FT misc_feature complement(83949..84506) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(84135..84179) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature." FT misc_feature complement(84462..84485) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(84596..85645) FT /transl_table=11 FT /locus_tag="BP3340" FT /product="putative ABC transport inner membrane permease FT protein" FT /note="Similar to Rhizobium meliloti putative iron ABC FT transporter permease protein smb21430 TR:CAC49658 FT (EMBL:AL603646) (356 aa) fasta scores: E(): 4.7e-59, 52.41% FT id in 332 aa, and to Corynebacterium diphtheriae HmuU FT TR:Q9XD88 (EMBL:AF109162) (350 aa) fasta scores: E(): FT 1.4e-35, 37.69% id in 329 aa. Also similar to BP0344, FT 40.256% identity (42.568% ungapped) in 313 aa overlap." FT /db_xref="GOA:Q7VU06" FT /db_xref="InterPro:IPR000522" FT /db_xref="UniProtKB/TrEMBL:Q7VU06" FT /protein_id="CAE43605.1" FT /translation="MAEAAPDAVRAYGRLLRRRRWLMAALAAAACAALAADAALGPAGL FT TLADLWRTLLQPGAADTAARVIVWDIRLPQAAMAAIVGMALGLAGAEMQTILNNPLASP FT FTLGVSSAAALGASLAIVLHVGVPGVAAPWLVPLYAFLFAALAGLLLDQVARHRAIGAP FT AIVLFGIALVFTFNALISLIQFTASAQALQNLVFWTMGSMARADWASVGILALACALAL FT PLALRHAWRLTALRLGETRAASFGVDVRRLRLAALCRISLLAALAVAFAGTIGFIGLVA FT PHIARRLFGEDHRFYLPGSALTGALILSLAASVSKSLVPGVIVPVGIVTSLVGIPFFVA FT VLLRRPQSP" FT misc_feature complement(84614..85525) FT /note="HMMPfam hit to PF01032, FecCD transport family" FT misc_feature complement(join(84617..84682,84704..84760,84800..84865, FT 84956..85021,85088..85153,85193..85258,85271..85336, FT 85376..85432,85517..85582)) FT /note="9 probable transmembrane helices predicted for FT BP3340 by TMHMM2.0 at aa 21-43, 71-90, 103-125, 129-151, FT 164-186, 208-230, 260-282, 295-314 and 321-343" FT misc_feature complement(85541..85645) FT /note="Signal peptide predicted for BP3340 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.749 between residues 35 and 36" FT CDS complement(85645..86334) FT /transl_table=11 FT /locus_tag="BP3341" FT /product="putative periplasmic protein" FT /note="Similar to Pseudomonas aeruginosa periplasmic FT protein pa0974 TR:Q9RNV2 (EMBL:AF177774) (274 aa) fasta FT scores: E(): 2.7e-09, 30.47% id in 210 aa" FT /db_xref="GOA:Q7VU05" FT /db_xref="InterPro:IPR011990" FT /db_xref="InterPro:IPR013026" FT /db_xref="InterPro:IPR014162" FT /db_xref="UniProtKB/TrEMBL:Q7VU05" FT /protein_id="CAE43606.1" FT /translation="MRDQALPLRTLVITASLALAAMAAPAHAFADDEARRAILDLRQQV FT QQQNEQNQRARLQLADQLQAMQQEIAQLRDQLELISRQQPNAQGGQPQHAGNPPGVTAV FT DQQEQAAYDGAIDLFRKGQYKDAAESLAAFIALYPNSQLAPTAQFYLGSSRYAMKDFKG FT AIEQLNNLVQNAPTNARAPDALLVIAGSQIELNNRAGAKATLQRIVRDYPTTPAANTAK FT SRLQLLQ" FT misc_feature complement(86245..86334) FT /note="Signal peptide predicted for BP3341 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.506 between residues 30 and 31" FT misc_feature complement(86248..86313) FT /note="1 probable transmembrane helix predicted for BP3341 FT by TMHMM2.0 at aa 7-29" FT CDS complement(86421..86918) FT /transl_table=11 FT /locus_tag="BP3342" FT /product="putative peptidoglycan-associated lipoprotein" FT /note="Similar to Haemophilus ducreyi 18 kDa outer membrane FT protein TR:Q47958 (EMBL:U42466) (157 aa) fasta scores: E(): FT 1.1e-19, 46.01% id in 163 aa, and to Escherichia coli FT peptidoglycan-associated lipoprotein precursor Pal or ExcC FT or b0741 or z0909 or ecs0776 SW:PAL_ECOLI (P07176) (173 aa) FT fasta scores: E(): 2.3e-15, 38.23% id in 170 aa" FT /db_xref="GOA:Q7VU04" FT /db_xref="HSSP:1OAP" FT /db_xref="InterPro:IPR006664" FT /db_xref="InterPro:IPR006665" FT /db_xref="InterPro:IPR006690" FT /db_xref="InterPro:IPR014169" FT /db_xref="UniProtKB/TrEMBL:Q7VU04" FT /protein_id="CAE43607.1" FT /translation="MKSRIAKSLTIAALAATLAACSSVPLDDKAGQAGGSGQGSASGQI FT LDPFNPQSILAQQRSVYFDFDSYTVSEQYRGLVETHARYLASNNQQRIKIEGNTDERGG FT AEYNLALGQRRADAVRRMMTLLGVSDNQIETISFGKEKPKATGSSEADFAENRRADIVY FT QR" FT misc_feature complement(86448..86735) FT /note="HMMPfam hit to PF00691, OmpA family" FT misc_feature complement(86502..86636) FT /note="ScanRegExp hit to PS01068, OmpA-like domain." FT misc_feature complement(86841..86918) FT /note="Signal peptide predicted for BP3342 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.348 between residues 26 and 27" FT misc_feature complement(86856..86888) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(86950..88266) FT /transl_table=11 FT /locus_tag="BP3343" FT /product="putative TolB-like translocation protein" FT /note="Similar to Xylella fastidiosa tolb protein precursor FT xf1897 TR:Q9PC84 (EMBL:AE004009) (430 aa) fasta scores: FT E(): 2e-55, 42.29% id in 428 aa, and to Escherichia coli FT TolB protein precursor or b0740 or z0908 or ecs0775 FT SW:TOLB_ECOLI (P19935) (430 aa) fasta scores: E(): 3e-48, FT 36.42% id in 431 aa" FT /db_xref="GOA:Q7VU03" FT /db_xref="InterPro:IPR007195" FT /db_xref="InterPro:IPR011042" FT /db_xref="InterPro:IPR011659" FT /db_xref="InterPro:IPR014167" FT /db_xref="UniProtKB/Swiss-Prot:Q7VU03" FT /protein_id="CAE43608.1" FT /translation="MTPAFRRADLTGFLRTYGAALILLLAAMLAWQPAQAQLRVDISGT FT GATQYPVAIADFAVDDTHGRALAEVIRADLTRTGQFRLINAAGSGLNVDSQVAHDDWRA FT KGADFLAYGSITRGPDGRYDVRYRLADTVKKGQLDGVAFSGTEQELRRVAHQIADRIYE FT KITGVRGVFSTRIAYVLKRGSTYELQVADADGQNPQVALRSREPIISPSWSPDGSRLAY FT VSFESGKPVVYVHTLATSARIPVANFKGNNSAPAWSPDGSQLAVALTRDGLSQIYIVSA FT GGGSNMRRITRSPGIDTEPNFTPDGRSIIFTSDRSGGPQIYQTGLDGGDARRLTFNGGY FT NISPRISPDGSTLLYVARRDGAFRIASLNLSSGSETLLTDGRDDQSPSFAPNGMQVLYA FT AIQNGRSVLAGVSSDGRVRQTLSVLNGEIREPTWGPFTR" FT misc_feature complement(88159..88266) FT /note="Signal peptide predicted for BP3343 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.996) with cleavage site FT probability 0.989 between residues 36 and 37" FT misc_feature complement(88165..88230) FT /note="1 probable transmembrane helix predicted for BP3343 FT by TMHMM2.0 at aa 12-34" FT CDS complement(88283..89257) FT /transl_table=11 FT /locus_tag="BP3344" FT /product="Proline-rich inner membrane protein" FT /note="No significant database matches. Contains possible FT coiled-coil region at residues 131-202." FT /db_xref="GOA:Q7VU02" FT /db_xref="InterPro:IPR006260" FT /db_xref="InterPro:IPR014161" FT /db_xref="UniProtKB/TrEMBL:Q7VU02" FT /protein_id="CAE43609.1" FT /translation="MTPPLIRSDRSAPPSPATQDNRKALGLAVLVHLLLLLVLIFGVNW FT RSENPGPVQVELWADGDSPVNPPPDEVKPQPKPEPQPEPEPQPQPEPEPEPEPPPPPPP FT PPPPQPEVQPKEQPDPEIALEEARKKREQEEKARQAAEAAKEKARLEEERRQAELKEKQ FT RLEQERRAAEKAAAEKAAAEKQAAEKKAKEEAAKKAAADKALRDAFRNDALGAAGIPGG FT TADRNQAGGGRDSGYGAKVRACVQPGVAYPPPPRAGSANPTAQYRVQLGSDGKVNGVTL FT TSSSGNPGFDRAVETGIRRCNPFPKPSTGRYEPIIDVVYRMYD" FT misc_feature complement(89129..89185) FT /note="1 probable transmembrane helix predicted for BP3344 FT by TMHMM2.0 at aa 24-43" FT CDS complement(89294..89752) FT /transl_table=11 FT /locus_tag="BP3345" FT /product="putative TolR-like translocation protein" FT /note="Similar to Escherichia coli TolR protein or b0738 or FT z0906 or ecs0773 SW:TOLR_ECOLI (P05829) (142 aa) fasta FT scores: E(): 9.1e-09, 33.33% id in 138 aa" FT /db_xref="GOA:Q7VU01" FT /db_xref="InterPro:IPR003400" FT /db_xref="InterPro:IPR014168" FT /db_xref="UniProtKB/TrEMBL:Q7VU01" FT /protein_id="CAE43610.1" FT /translation="MPSVRSNGRAGRRMKADINVVPYIDVMLVLLVIFMVTAPLITPGL FT IELPSVGQAADVPAKPLEVQISEDGKIALRMREPGATPQDIARTELVNQVRSRITAETP FT VVIAADGKVPYESVVKVMDELRSSGITRLGLLVDQGAGAETQQPARKR" FT misc_feature complement(89333..89722) FT /note="HMMPfam hit to PF02472, Biopolymer transport protein FT ExbD/TolR" FT misc_feature complement(89627..89692) FT /note="1 probable transmembrane helix predicted for BP3345 FT by TMHMM2.0 at aa 20-42" FT CDS complement(89752..90432) FT /transl_table=11 FT /locus_tag="BP3346" FT /product="putative TolQ-like translocation protein" FT /note="Similar to Escherichia coli TolQ protein or Fii or FT b0737 or z0905 or ecs0772 SW:TOLQ_ECOLI (P05828) (230 aa) FT fasta scores: E(): 3.2e-38, 50.68% id in 219 aa" FT /db_xref="GOA:Q7VU00" FT /db_xref="InterPro:IPR002898" FT /db_xref="InterPro:IPR014163" FT /db_xref="UniProtKB/TrEMBL:Q7VU00" FT /protein_id="CAE43611.1" FT /translation="MQVTNDMSLLSLISHASVPVQLIMLLLLGISIMSWTYIFAKRLAI FT KRAHQQTRRFEDDFWSGGDLAMLQQAVATRRDEQGALARIFDAGMTEFLKARRTSAAGD FT VNAVLDGPRRAMRAAYQREMDSLESHLNFLASAGSVSPYIGLLGTVWGIMHAFIGLSNM FT QQATLAAVAPGIAEALIATAIGLFAAIPAVVAYNRFTNDIDRLSIRFDSFVDEFLNILQ FT RQVR" FT misc_feature complement(89788..90207) FT /note="HMMPfam hit to PF01618, MotA/TolQ/ExbB proton FT channel family" FT misc_feature complement(join(89845..89910,89971..90036,90316..90372)) FT /note="3 probable transmembrane helices predicted for FT BP3346 by TMHMM2.0 at aa 20-39, 132-154 and 174-196" FT CDS complement(90435..90863) FT /transl_table=11 FT /locus_tag="BP3347" FT /product="conserved hypothetical protein" FT /note="Similar to many eg. Pasteurella multocida FT hypothetical protein Pm0971 TR:Q9CM67 (EMBL:AE006136) (136 FT aa) fasta scores: E(): 1.4e-19, 43.9% id in 123 aa" FT /db_xref="GOA:Q7VTZ9" FT /db_xref="InterPro:IPR006683" FT /db_xref="InterPro:IPR006684" FT /db_xref="InterPro:IPR014166" FT /db_xref="UniProtKB/TrEMBL:Q7VTZ9" FT /protein_id="CAE43612.1" FT /translation="MTDPKFSESVLDIRVYYEDTDAGGVVFYANYLKFLERARTEWLRG FT LGVNQSDLAEREHRLFGVHSLDMSYRKPARLDDLITIRSRITRIGRASIHFAQRAERNG FT ELLAQGNIQICCVDSIRMRPAELPDDIRAKLKFIQIQE" FT CDS complement(90916..92646) FT /transl_table=11 FT /gene="proS" FT /gene_synonym="drpA" FT /locus_tag="BP3348" FT /product="prolyl-tRNA synthetase" FT /EC_number="6.1.1.15" FT /note="Similar to Escherichia coli prolyl-tRNA synthetase FT ProS or DrpA or b0194 SW:SYP_ECOLI (P16659) (572 aa) fasta FT scores: E(): 2.3e-131, 60.75% id in 558 aa" FT /db_xref="GOA:Q7VTZ8" FT /db_xref="HSSP:1NJ2" FT /db_xref="InterPro:IPR002314" FT /db_xref="InterPro:IPR002316" FT /db_xref="InterPro:IPR004154" FT /db_xref="InterPro:IPR004500" FT /db_xref="InterPro:IPR006195" FT /db_xref="InterPro:IPR007214" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTZ8" FT /protein_id="CAE43613.1" FT /translation="MRASKYHLNTLKEAPAEAEIASHQLMTRAGMIRKLAGGIYTYMPL FT GLKVIRKIEGIVREEMNAAGAIELLMPVVQPAELWMESGRWEQYGAELLRIKDRHQRDF FT VLQPTSEEVITDIARNEIQSYRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDAYSF FT DRDEAGAQRSYDIMYAAYQRIFQRLGLEFRAVAADTGSIGGSRSHEFQVIADTGEDLIV FT YNPESDYAANIELAEAPALLATRAAPGQDLEAVPTPGAAKCEDVAKLLDLPLARTIKSI FT VLAVDQPEGPAQVWLLLLRGDHELNEIKAGKLPGLAGFRFATETEILDHFGCKPGYLGP FT IKTARPVHVVADRTVANMADFVCGANREDYHYQGANWGRDLPEPELVADLRNVVEGDPS FT PDGKGALSIQRGIEVGHVFFLGTKYSEALKATFLDDNGKPAVLQMGCYGIGVTRIVGAA FT IEQNHDARGIIWPRAIAPYEVVICPVGWGKSETVRDTALALYEALRARGVDVMLDDRDS FT RPGVMFAEWELIGVPLRVTVGERGLNEGVVELQARREAEAAKVPVDQALAQTLAKLDLL FT " FT misc_feature complement(90976..92262) FT /note="HMMPfam hit to PF00587, tRNA synthetase class II (G, FT H, P, S and T)" FT misc_feature complement(92170..92232) FT /note="ScanRegExp hit to PS00179, Aminoacyl-transfer RNA FT synthetases class-II signature 1. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 92712..93284 FT /transl_table=11 FT /gene="nudH" FT /locus_tag="BP3349" FT /product="putative Nudix hydrolase" FT /note="Similar to many eg. Neisseria meningitidis probable FT NudH or nma1942 SW:NUDH_NEIMA (Q9JT78) (174 aa) fasta FT scores: E(): 2e-52, 75.79% id in 157 aa, and to Lupinus FT angustifolius diadenosine 5',5'''-p1,p4-tetraphosphate FT hydrolase TR:O04841 (EMBL:U89841) (199 aa) fasta scores: FT E(): 9.2e-18, 38.31% id in 154 aa" FT /db_xref="GOA:Q7VTZ7" FT /db_xref="InterPro:IPR000086" FT /db_xref="InterPro:IPR015797" FT /db_xref="InterPro:IPR020084" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTZ7" FT /protein_id="CAE43614.1" FT /translation="MLDREGYRPNVGIILVNGKNEVFWGKRIREHAWQFPQGGIKYGES FT PVQAMYRELHEEVGLKPEHVRILGRTRDWLRYNVPDHFVRREWRGHYKGQKQIWFLLRL FT VGRDSDVCLRATQHPEFDAWRWSQYWVPLDAVIEFKRDVYTQALNELAVILFRRHHETR FT YLRQRVHGPRSTDSPSSETDGHAHIAG" FT misc_feature 92730..93161 FT /note="HMMPfam hit to PF00293, MutT-like domain" FT misc_feature 92751..92780 FT /note="ScanRegExp hit to PS00659, Glycosyl hydrolases FT family 5 signature." FT misc_feature 92823..92888 FT /note="ScanRegExp hit to PS00893, Nudix hydrolase FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 93265..93951 FT /transl_table=11 FT /locus_tag="BP3350" FT /product="two component response regulator" FT /note="Similar to Salmonella typhimurium transcriptional FT regulatory protein TctD TR:AAL21670 (EMBL:M28368) (224 aa) FT fasta scores: E(): 1.1e-37, 50.68% id in 219 aa, and to FT Ralstonia solanacearum putative response regulator FT transcription regulator protein RSC2935 TR:CAD16642 FT (EMBL:AL646072) (235 aa) fasta scores: E(): 2.8e-55, 66.36% FT id in 223 aa" FT /db_xref="GOA:Q7VTZ6" FT /db_xref="HSSP:1B00" FT /db_xref="InterPro:IPR001789" FT /db_xref="InterPro:IPR001867" FT /db_xref="InterPro:IPR011006" FT /db_xref="UniProtKB/TrEMBL:Q7VTZ6" FT /protein_id="CAE43615.1" FT /translation="MRILLVEDERDMAAWLMRALAQSGFTPDHAPDARTAEGLMVGNEY FT DAVVMDLRLPDKHGLVLLREMRNRDDRTPVLLLTAQGALQDRVRGLNLGADDFLTKPFA FT LEELEARLTALVRRSRGRQPPRLQCGSLSYDGESRAFTLDGALLFLTPREHAALAALLT FT RSGYPVDKSQLFGKVFTHESEANPDAIEVVLHRLRKKLTGSDVRIVTVRGLGYMLESTV FT SESSES" FT misc_feature 93298..93600 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain" FT misc_feature 93700..93909 FT /note="HMMPfam hit to PF00486, Transcriptional regulatory FT protein, C terminal" FT CDS 94011..>94214 FT /transl_table=11 FT /locus_tag="BP3351" FT /product="N-terminal region of a two component sensor FT kinase (partial)" FT /note="Partial CDS. This CDS is the N-terminal region of FT BP0501 which was disrupted by the integration of a FT prophage. This CDS lacks a stop codon. The sequence has FT been checked and believed to be correct. Similar to FT N-terminus of Rhizobium meliloti putative two-component FT sensor histidine kinase protein SMB20721 TR:CAC49828 FT (EMBL:AL603647) (465 aa) fasta scores: E(): 9.8, 32.3% id FT in 65 aa" FT /db_xref="GOA:Q7VTZ5" FT /db_xref="InterPro:IPR013727" FT /db_xref="UniProtKB/TrEMBL:Q7VTZ5" FT /protein_id="CAE43616.1" FT /translation="MLPGVVVLLVIDSWNDYRTLAAITNEAYDSALLEPARVLESSLEF FT AADGTLQVATPLYAQVMLESKGG" FT variation 94215 FT /note="large insertion in pertussis relative to FT parapertussis and bronchiseptica" FT CDS 94307..94978 FT /transl_table=11 FT /locus_tag="BP3352" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Salmonella typhimurium gifsy-2 prophage FT stm1053 SWALL:Q8ZQ78 (EMBL:AE008745) (208 aa) fasta scores: FT E(): 6.8e-16, 38.83% id in 188 aa, and to Bacteriophage FT SPBc2 YoqW protein SWALL:O64131 (EMBL:AF020713) (224 aa) FT fasta scores: E(): 3.3e-09, 27.19% id in 228 aa" FT /db_xref="InterPro:IPR003738" FT /db_xref="UniProtKB/TrEMBL:Q7VTZ4" FT /protein_id="CAE43617.1" FT /translation="MCGRIAQKSAPEDYVEILWPNARLIFDDVAGPRYNIPPGTRPLTM FT HRLVDQAEALARLPWGYKPHGSRFFMVNAKLETIERHGWPWKLMIGVGRILVPADGWYE FT WRALDSGPKPAKQSYYIHGDAPLLFAGLSAWRRGAELDEAHGFAIVTNDALGGMVDVHD FT RRPVALPPELAREWVDPATPVARAKEILRAGLPETAFSWYPVRQEVGSSKYQLPDAVDP FT L" FT misc_feature 94307..94960 FT /note="HMMPfam hit to PF02586, Uncharacterized ACR, FT COG2135" FT misc_feature complement(94307..122175) FT /note="putative degenerate prophage." FT CDS 95307..95528 FT /transl_table=11 FT /locus_tag="BP3353" FT /product="putative phage-related hypothetical protein FT (partial)" FT /note="no significant database matches." FT /db_xref="UniProtKB/TrEMBL:Q7VTZ3" FT /protein_id="CAE43618.1" FT /translation="MSWSRAYSARPGLHARRRAGGYYQGIIIEQLVKASRFQAGDRVLF FT GEDQVQAPATEADRARRPIRTPRRYRGW" FT CDS 95528..95809 FT /transl_table=11 FT /locus_tag="BP3354" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VTZ2" FT /protein_id="CAE43619.1" FT /translation="MPFRAPLTHDELRAIRERQPWNPDVLTLLWEVKRLRSMMLRAYQL FT SGEFHRPVGVLANCYDEYMAQLVVEPCVLERDADVAEMLNAPAQPRKG" FT CDS complement(95806..96321) FT /transl_table=11 FT /locus_tag="BP3355" FT /product="phage-related conserved hypothetical protein" FT /note="Weakly similar to Bacteriophage N15 protein gp55 FT precursor 55 SW:VG55_BPN15 (O64363) (181 aa) fasta scores: FT E(): 0.00017, 31.76% id in 170 aa. Also similar to FT Escherichia coli hypothetical protein YdfP precursor YdfP FT SW:YDFP_ECOLI (P76158) (165 aa) fasta scores: E(): 4.5e-06, FT 32.71% id in 162 aa" FT /db_xref="InterPro:IPR019659" FT /db_xref="UniProtKB/TrEMBL:Q7VTZ1" FT /protein_id="CAE43620.1" FT /translation="MGAWRRSAVVALLSAALAAGAAWTAQGWRKDAAIARQAAAFALER FT DRQAQATVAALEAVREEGRRRTAAVEKARDDAQELAAAAAANAVGARAERDRLRTHANA FT LARAAVARDPDAADGSPTGASAIDLLAYMLSRVSGRAEALAGVADRARIAGLTCERAYE FT AVRGNVRP" FT misc_feature complement(96250..96321) FT /note="Signal peptide predicted for BP3355 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.819 between residues 24 and 25" FT CDS complement(96321..96872) FT /transl_table=11 FT /locus_tag="BP3356" FT /product="putative phage lysozyme" FT /note="Similar to Serratia marcescens phage lysozyme RegB FT SWALL:Q54423 (EMBL:U31763) (179 aa) fasta scores: E(): FT 0.05, 30.76% id in 169 aa, and to Bacteriophage phi-Ea1h FT lysozyme LyZ SWALL:Q9FZS7 (EMBL:AJ278614) (178 aa) fasta FT scores: E(): 0.079, 26.7% id in 191 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VTZ0" FT /protein_id="CAE43621.1" FT /translation="MRPGRRIKGGVAALVASGVLVLASVRLMDFLGRWEGQGQQVVYAD FT RLARGLPTMCKGVTKHTSPYPVVVGDYWSPERCAEVERMVVSKGQLQLARCINVAISQP FT IFDALSSHAHNFGVPSTCASRAVGLINAGRLAEGCNALANAPDGAPVWSYVTDQRGRKR FT FVQGLRNRRLEERALCLSGL" FT CDS complement(96851..97093) FT /transl_table=11 FT /locus_tag="BP3357" FT /product="phage-related conserved hypothetical protein" FT /note="Weakly similar to Serratia marcescens extracellular FT secretory protein NucE TR:Q54418 (EMBL:U11698) (89 aa) FT fasta scores: E(): 0.26, 31.08% id in 74 aa, and to FT Haemophilus somnus holin TR:Q48281 (EMBL:U28154) (74 aa) FT fasta scores: E(): 2.6, 28.57% id in 63 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VTY9" FT /protein_id="CAE43622.1" FT /translation="MEPQPIVDKVAANVTYVGSGWAVIFGLSANEFAALVGAAVAVVGL FT LVNLWFKWQHLRIARTVAATRKQHEDEESCDLEEE" FT misc_feature complement(96941..96997) FT /note="1 probable transmembrane helix predicted for BP3357 FT by TMHMM2.0 at aa 32-51" FT CDS complement(97098..97910) FT /transl_table=11 FT /locus_tag="BP3358" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VTY8" FT /protein_id="CAE43623.1" FT /translation="MIGVGVCLWADSTLQSGGHASRLLLDGKPFDTRAPLSLGTQARIS FT GGRGDESLSGPLAGGPARRVKGYLPALPDGKLVARFSSVAELTGVSDAWMGGTSVGSGR FT RAQVFHFRKIDDQKEVQLQIVAGQYTKAVKVRFYDDRDGIKAGVMYARYVEGSQLGLDF FT DIIEARSQEIATAESEIGYGCAAISLVGIQEYVFLTYALDSDVILTVSGANTYIGTTTV FT ESGTVRIGHPLAFGRNGLIKVRAGAALDKHGYALPHRMIVNDGATVLE" FT CDS complement(97910..98170) FT /transl_table=11 FT /locus_tag="BP3359" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VTY7" FT /protein_id="CAE43624.1" FT /translation="MKDRFILYQPSLGGPVNSAFAVTPSDTQDLREVTRALYLGAAGSM FT RVRFADGTEHTYAALAAGRHPLRVVRVFSTGTTATDITGEV" FT CDS complement(98392..98808) FT /transl_table=11 FT /locus_tag="BP3361" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VTY6" FT /protein_id="CAE43625.1" FT /translation="MSGFVKPRMGNFVMYDQIGRIHQATKGQAHRTQADARSMGLQVLE FT VDDLYSPDHYMVVDGKVVPRPASPITRRGLVLSGVPATPEAPADLMIGQDGYYEVTDSR FT VELEFGEEGTHQITVKRWPYKDWVGTIEHAEDQL" FT CDS complement(98813..102769) FT /transl_table=11 FT /locus_tag="BP3362" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Bacteriophage D3 Orf26 TR:Q9MC95 FT (EMBL:AF165214) (909 aa) fasta scores: E(): 4.5e-23, 26.57% FT id in 700 aa, and to Bacteriophage HK022 GP24 TR:Q9MCU0 FT (EMBL:AF069308) (1183 aa) fasta scores: E(): 3.4e-08, FT 22.26% id in 1051 aa. Possible alternative translational FT start sites." FT /db_xref="InterPro:IPR015406" FT /db_xref="UniProtKB/TrEMBL:Q7VTY5" FT /protein_id="CAE43626.1" FT /translation="MPDITIRRDPFRPHLRQETVVARQGTRLDTILRREGFIVGRAARL FT ARTSPFIVQRNGRWLLQAAWHVRLKKNDVVVVVVLPAGGGGSNPLQVVAMVVLAAATAG FT VGAWATSAYAGAAGVGATSAAALTVGAGAATAVGPVGGMVVNSLFPPARLPGTLQREKA FT SPTYTLSAQGNMARPMEAIPVRYGRYRSYLDFAAQPYTEMVNNQTHLYQLFCVGQGRYE FT IEEIRIEETPIGNFSEVEYEVVEPGGQVTLFPDNVVTSAEVQGIELPAINVEGAGPKGP FT FAANPPGTLASEIAIDVLLPKELFYAAHDGTLESAGTGVNVYARQIDDSGRPIGTTILL FT GKENIVAATLTPQYRTFRYKVEPARWEVSVERNSGHLAERATRMIRDVTWLGLRSYLPS FT KRTYGNVTMLAVAMRATGNLNQTTARRINIIATRRLRTWDPVQGWSKDLKPTRNPAWAI FT ADACTDREYGRGLPDSRINLAALYRLAKVWDERGDWFDGVFDVSTTFWEAVTQVARAGR FT ALPIYHAGVIDVIRDEPKSVRTQMFTPANIVARSFSVDYVFPAHDDPDYIIVEFVNERT FT WKDDEVECAWPGAAKRRPYRLRLVGVTGRVQAWREGMALLARNRDQRRFASFQTELEGA FT IPGYADLVEISHDVPKWGLSGIVEDYDPRALRLTTSEPLQWWQGQNHYISLRGRDGVPA FT GPFRVEPGTHEREMRIVDLVDGQGLYVSTGEAEEPTHYTFGPGERRALLAQVMRAVPSE FT AGLWTLDVVNYAPSVHTAELGGQEPEFASPSLLPIVPLGPIVDSVTVFSGPRPGQQIVS FT ATPASGAYRYEFEASDDGGVHWQPLGMAELPSLEVYLRAGSWQVRVRGIGALSGPWKTW FT QGNVSASAAPPPKLSALTTISQVMAIELAWTVPDAPWMSSVEIWESSTPNLGDASLMGE FT FRLPQSRFTRFGLSHGTRIWFWGRIRDVAGQLGPWYPDGQGVLGSASSDAGKILDYLSG FT QIGPEQLTRDLTQTISGMERNINTVTAKLDQEREERLSQDGALARRVEDAIAANGAGAT FT AVKQTSAALASLDGRLRATWSVQAQVAQDGKVYAAGMALGAYAGEGGQVQTSVYFLADR FT FAFLNLANGKVSSPFVIQNGQTFLNQAFIGKAWIKSAQVESLDVGKIVAGVMSADRINA FT NSLIAKLASFTTAYVKTAHIGVAQVDTLRLASGAVVTGSHSIISKSLWRGGSELATVAI FT GSLYLPYGGSVVVFMQYAQSGGRFPFGRNTIVSIDGEIIPNALSNPPDGVAMITWISDT FT LPEGKTISWSIKARHPVDGTYYISGRVAVLAIQR" FT CDS complement(102762..103151) FT /transl_table=11 FT /locus_tag="BP3363" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Bacteriophage D3 Orf25 TR:Q9MC96 FT (EMBL:AF165214) (135 aa) fasta scores: E(): 0.0012, 32.03% FT id in 128 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VTY4" FT /protein_id="CAE43627.1" FT /translation="MTSDDVNRYIGLAWQFGARGPGAYDCWGLLRECREHYFGGGIPDT FT VFGEQARALYAEKMRTGGWEIVMQPEHGDGVLLRAGNDPHVGIYLDLDGGGVLHAMEGR FT GVIFSPMRALVTMGFSQPTFYRIHA" FT CDS complement(103148..103681) FT /transl_table=11 FT /locus_tag="BP3364" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Bacteriophage D3 Orf22 TR:Q9MC99 FT (EMBL:AF165214) (163 aa) fasta scores: E(): 0.41, 23.12% id FT in 173 aa" FT /db_xref="InterPro:IPR014974" FT /db_xref="UniProtKB/TrEMBL:Q7VTY3" FT /protein_id="CAE43628.1" FT /translation="MSLEKALKEAYASAPQDRVVFDTLELRHPAFVDEHGERTAVRVVL FT GYEDIYARLEAEAPLDGGKEVLFQAGAFRLRLPGFEEGQVPSLLITIDGASEKIVDHVE FT AAVQSRYPIYATYRPYVSTDLSRPQMNPPITMELNKVTVTGASVSGTATLADVHNWAFP FT HQRYMRERFPGLFR" FT CDS complement(103749..104108) FT /transl_table=11 FT /locus_tag="BP3365" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Bacteriophage D3 Orf21 TR:Q9MCA0 FT (EMBL:AF165214) (159 aa) fasta scores: E(): 9.9e-05, 34.31% FT id in 102 aa, and weakly similar to the C-terminal portion FT of Drosophila melanogaster protein CG3415 TR:AAK92917 FT (EMBL:AE003501) (598 aa) fasta scores: E(): 6.4, 26.59% id FT in 94 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VTY2" FT /protein_id="CAE43629.1" FT /translation="MTLPHWPAGLPLVEFSRQPISPFQRTEMENGRARHRRHTRVHPVH FT AHVSFVLDREQYDVYQRFCSIDLNGYAGWFLMAMNGPGGLKLRKVRWLLPVPREERIPG FT DLWRVSGELESMSDE" FT CDS complement(104118..106730) FT /transl_table=11 FT /locus_tag="BP3366" FT /product="putative phage tail protein" FT /note="Similar to Bacteriophage lambda minor tail protein FT precursor H SW:VMTH_LAMBD (P03736) (853 aa) fasta scores: FT E(): 1.3e-26, 26.31% id in 859 aa, and to Escherichia coli FT O157:H7 putative tail length tape measure protein precursor FT ECS0837 TR:BAB34260 (EMBL:AP002553) (1021 aa) fasta scores: FT E(): 9.4e-34, 26.83% id in 831 aa" FT /db_xref="InterPro:IPR006431" FT /db_xref="InterPro:IPR009628" FT /db_xref="InterPro:IPR019125" FT /db_xref="UniProtKB/TrEMBL:Q7VTY1" FT /protein_id="CAE43630.1" FT /translation="MADEVASLVLRVDSTQAKGASADLDKLATSGAKAEQAAVKVGTAG FT KAAAAGLGAMGQAAKTAQAQAAAAAMTAGEMRLAMRSLPMQMTDIAVGLSTGQSPFYVL FT MQQGGQLKDLFGGIGPAIKAVGGYVAALITPFTAAAAGAAALAVAYQQGAEEGRRFTAA FT ITLTGNAAGVTESQLAAMAKRISDIQGTTGNAAAALTKLVETGKIAGDSIEGLGRAAVL FT TEAATGRSVDEMVKDYERIADAPAEALTKLNERYHFLTLAVYERVKSLQEEGRQQDAAR FT LALTTYAQAMEERSNQVVKNAGYMERAWNAVKGAAKGAWDAIADVGRPDAAQDVLNGLE FT REARQRRENIALAEQAGASVSKAERMSLAAAEACVALARDQMQTQSAIAKAQALDAQRS FT AVGIAARDELNKLIAQGASNEEKRAKALEENEERIRRIRAGGGTVTATEEAASIAAINK FT QYEKRSAAVAGSVAAGVRELEQAREREAVLRAELETTGKITSDRQKLVAFEQRIADLKA FT KDQLTADEKSILANETANRQQLERNAGLADQIELQKEVVKLKTLEASAQATLAADQDRY FT NDLLEGFTASPRVREQLQAQQQIYRDFQRQVRASEKEGLTPDALAARVQVLKLNLDQRL FT ELLARHYENVGVLEGDWKKGAEGAFNDYAETVGNVASATRNAFADAFKGAEDALVQFVT FT TGKLSFAELADSVIADLMRITVRQSITGPLASVLGSVFSNAFGSALPATASWAMPELAG FT RRATGGPTLPRRLYEVAENGPELYDEGGRTYLLSGGDGGHVTPLSRNAYRPSMPVTVNV FT HGVDSQPQVRARPDARGGLSIDLIFRQVKDRLAHDIDAGVGSLPRALERRYGLNRQLA" FT CDS complement(106756..107046) FT /transl_table=11 FT /locus_tag="BP3367" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Yersinia pestis hypothetical phage FT protein Ypo2118 ypo2118 SWALL:Q8ZEP2 (EMBL:AJ414151) (73 FT aa) fasta scores: E(): 1.2e-08, 52.05% id in 73 aa" FT /db_xref="InterPro:IPR014915" FT /db_xref="UniProtKB/TrEMBL:Q7VTY0" FT /protein_id="CAE43631.1" FT /translation="MYRPMLDKAQLAEFGLRSDDFPAAVIELWPDNVMPKVVFEAMGSQ FT WRIGFAGPTGLDYGALPGVMRMLGVPPEQETDVFDGVRVMESAALRMMNKK" FT CDS complement(107064..107393) FT /transl_table=11 FT /locus_tag="BP3368" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Yersinia pestis hypothetical phage FT protein Ypo2117 ypo2117 SWALL:Q8ZEP3 (EMBL:AJ414151) (103 FT aa) fasta scores: E(): 2.7e-07, 36.79% id in 106 aa" FT /db_xref="GOA:Q7VTX9" FT /db_xref="InterPro:IPR001345" FT /db_xref="InterPro:IPR014859" FT /db_xref="UniProtKB/TrEMBL:Q7VTX9" FT /protein_id="CAE43632.1" FT /translation="MSNIIFKLQPAPTFTVPVEIPRHGEEPANIKVTFRHKSRDEMKDF FT LERADKSDASQDIALVNEMIAGWDGPDMEFSDEAVGLLIQNYQGAVPALVQAYSLELLQ FT ARRKN" FT CDS complement(107403..107921) FT /transl_table=11 FT /locus_tag="BP3369" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein rsc1689 rsc1689 or rs04083 SWALL:Q8XYR9 FT (EMBL:AL646065) (217 aa) fasta scores: E(): 4.3e-22, 41.07% FT id in 168 aa" FT /db_xref="InterPro:IPR014918" FT /db_xref="UniProtKB/TrEMBL:Q7VTX8" FT /protein_id="CAE43633.1" FT /translation="MKSGWPELNERVVRAVNTASNTFALEGIDTTKVGRFSKGQGIGTA FT TPVSTWVDLSQVTNVAKTGGEQQFYQWRYVEDRNGRQRQRPTYKSAKFITLTLDYDPAL FT AWYEALKEADAAKDAVVLRAKLPNNDELYYLVYPSFDSDPSMELDANMQNTATFSMMSD FT FTRYAPLAS" FT CDS complement(108176..108676) FT /transl_table=11 FT /locus_tag="BP3370" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Escherichia coli O157:H7 hypothetical FT protein ECS3504 TR:BAB36927 (EMBL:AP002562) (188 aa) fasta FT scores: E(): 2.5e-14, 37.5% id in 144 aa. C-terminal region FT is similar to bacteriophage T7 gene 3.8 hypothetical FT protein SW:Y38_BPT7 (P03797) (121 aa) fasta scores: E(): FT 0.0023, 30.39% id in 102 aa" FT /db_xref="GOA:Q7VTX7" FT /db_xref="InterPro:IPR001471" FT /db_xref="InterPro:IPR003615" FT /db_xref="InterPro:IPR016177" FT /db_xref="UniProtKB/TrEMBL:Q7VTX7" FT /protein_id="CAE43634.1" FT /translation="MNEARITAERLRSVVHYDPETGKFTRLVRLAQRHNVGDDAAHATA FT NGYQRVGIDGQRYLAHRLAWLYVYGAWPTQNIDHVNGDRSDNRIANLRDVPQAVNMQNR FT RHPQADNKSGYLGVYWERGAKKWRSRVQVAGKAHEVGLFDDPAVAHAAYVAKKRKLHEG FT CSI" FT CDS complement(108684..109106) FT /transl_table=11 FT /locus_tag="BP3371" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Rhizobium loti hypothetical protein FT MLR8015 TR:Q984G5 (EMBL:AP003013) (137 aa) fasta scores: FT E(): 0.0066, 30.43% id in 115 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VTX6" FT /protein_id="CAE43635.1" FT /translation="MSQDLIRAAFEKRLKDWAKARTPELAVAWQNINFTPPSNAVYLRA FT YVLPAATISRDAAGDHRQYRSLFQVNVVMPIGAGSRAAEQIQAELDALFQVNLIMPSGG FT LAVRVRTPISSGQPTTGDADHTVPISLGYDVQFYPE" FT CDS complement(109103..109501) FT /transl_table=11 FT /locus_tag="BP3372" FT /product="phage-related hypothetical protein" FT /note="Weakly similar to Yersinia pestis hypothetical phage FT protein Ypo2114 ypo2114 SWALL:Q8ZEP6 (EMBL:AJ414151) (194 FT aa) fasta scores: E(): 1.8e-08, 36.93% id in 111 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VTX5" FT /protein_id="CAE43636.1" FT /translation="MSFTADLGKFAARAKGNIDTATRQATVLLAKGVILKSPFDTGRFR FT ANWQFSAAGIQRATSMAVDPDGQVTLHRLVADIKQTRAGGVTYLSNSLPYAVPLENGWS FT KQAPQGMAKLTAQEFQRYVSQAAKDANK" FT CDS complement(109498..109893) FT /transl_table=11 FT /locus_tag="BP3373" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Rhizobium loti hypothetical protein FT MLR8012 TR:Q984G8 (EMBL:AP003013) (130 aa) fasta scores: FT E(): 0.25, 29.26% id in 123 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VTX4" FT /protein_id="CAE43637.1" FT /translation="MATFDYADMAATAQELLLEFGGPVSVRQFVTGEYDPDLGQAPTTT FT VDNAGIGALFDYSAQAAGLANMAGSVIETGDKQMYLAPALAAGGAMPEPKPADLVLALG FT ATWRVVTVKTLAPAGLVLLYELQLRQA" FT CDS complement(109893..110093) FT /transl_table=11 FT /locus_tag="BP3374" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VTX3" FT /protein_id="CAE43638.1" FT /translation="MENFLRLVVPDPSGEPGLQECCGVQLYTADGMPISGLVAMKLESS FT TDRPIWRATLVMDINVSGKAV" FT CDS complement(110095..110625) FT /transl_table=11 FT /locus_tag="BP3375" FT /product="phage-related conserved hypothetical protein" FT /note="No significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VTX2" FT /protein_id="CAE43639.1" FT /translation="MPLLTRGFPSACGDIPMPLIVEDGTGLPNADSYVSVADCQAYAAA FT HGLAFAGEEAALEAALRNSALYLDGEYTYRGERATDTQALEWPRTVATGVPREVVNACC FT ELAARALTGPLWQDVSSTTAGAAIEKTVGPITTKYASAAGARNDGQTRYAGVAAMLRRW FT LSSYGSSVKLVRC" FT CDS complement(110640..110891) FT /transl_table=11 FT /locus_tag="BP3376" FT /product="phage-related hypothetical protein" FT /note="No significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VTX1" FT /protein_id="CAE43640.1" FT /translation="MTQKTKLPVWYLPGPFYRYEQDVKAEAAKAGVRIVDANATGSRDG FT AAKEVPKVTLKPEYRSKGKAEAPKEKESDPQPKDPAKT" FT CDS complement(join(110901..111464,112511..112948)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3379" FT /product="phage-related conserved hypothetical protein FT (pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to the C-terminal regions of FT bacteriophage SPP1 coat protein 13 TR:Q38582 (EMBL:X89721) FT (324 aa) fasta scores: E(): 0.041, 26.99% id in 163 aa, and FT Listeria monocytogenes hypothetical protein LMO2296 FT TR:CAD00374 (EMBL:AL591982) (333 aa) fasta scores: E(): FT 0.0024, 27.95% id in 186 aa." FT /note="no significant database matches" FT /db_xref="PSEUDO:CAE43641.1" FT repeat_region 111464..111495 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 111464..112516 FT CDS join(111566..112372,112376..112516) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3378" FT /product="transposase (Pseudogene)" FT /note="Pseudogene. Transposase for IS481 element. This FT transposase appears to have an in-frame stop codon" FT /db_xref="PSEUDO:CAE43642.1" FT misc_feature join(111947..112372,112376..112480) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT variation 112373..112375 FT /note="TAG stop codon" FT repeat_region complement(112485..112516) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(112945..113547) FT /transl_table=11 FT /locus_tag="BP3380" FT /product="phage-related hypothetical protein" FT /note="No significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VTX0" FT /protein_id="CAE43643.1" FT /translation="MPLDRNDPEVKALLEEVAAEATEALSAKNKELLAELRAAKAKAKG FT SEIDPEEHARLQTQVEELTGKLDKVTKDSARQIEKLTKDLAEKDDALTQHLIDSGLSTA FT LAKAGVAPHFMDAAKAMLRGQAAIKDGAAVIGDKPLADHVTEWAGTDQGKHFVTAPANS FT GGGGQGGNSGGKCTGNMGGSREDRVAALKVKFPELAG" FT CDS complement(113670..113912) FT /transl_table=11 FT /locus_tag="BP3381" FT /product="phage-related hypothetical protein" FT /note="No significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VTW9" FT /protein_id="CAE43644.1" FT /translation="MPLHLVPDAPKPAETEKDRIRKRIKALPKPKDMIQCPRCGGREVI FT ETRIGVFETARTWSGGTKVLLCVLCFMRGERVVLK" FT CDS complement(113918..114973) FT /transl_table=11 FT /locus_tag="BP3382" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Yersinia pestis hypothetical phage FT protein Ypo2108 ypo2108 SWALL:Q8ZEQ2 (EMBL:AJ414151) (370 FT aa) fasta scores: E(): 4.5e-51, 43.61% id in 360 aa, and to FT Deinococcus radiodurans head morphogenesis protein, FT putative dra0097 SWALL:Q9RZ57 (EMBL:AE001862) (253 aa) FT fasta scores: E(): 0.73, 23.44% id in 273 aa" FT /db_xref="InterPro:IPR017029" FT /db_xref="UniProtKB/TrEMBL:Q7VTW8" FT /protein_id="CAE43645.1" FT /translation="MRYSNGVVRRIIALLNQVDSDLGEQITRAMGRLPASAFTVARLKE FT LLKDVRTLNAEAYQQVRGELEKDLRDLAGYEIGYQGQLFDSLGIEFTTRGVTAGQVYAG FT AMAQPFQGRLLREWMAGLEAGRASRIRDAVRMGYVEGQTIQQVVQRVRGTRAKAYADGL FT LEIDRRNAEAVVRTAISHTAGFARDRWYDANDDIVGALAWVSTLDSRTSQMCRLRDGLR FT YEPDSHKPIGHKVPWGAGPGRLHWQCRSTSVPILKGMEDDPLIGTRAAKDYRDSARGKG FT EQVRATTTYADWLRRQPAAIQDDILGPTRGALFRKGGVELESFYNDRGVYLTLAELRRK FT DAAAFAQAGVE" FT CDS complement(115002..116420) FT /transl_table=11 FT /locus_tag="BP3383" FT /product="phage-related conserved hypothetical protein" FT /note="Poor database matches. Similar to the N-terminal FT region of bacteriophage MB78 protein Gp62 TR:Q9T0Q3 FT (EMBL:Y19202) (540 aa) fasta scores: E(): 1.8e-30, 30.54% FT id in 455 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VTW7" FT /protein_id="CAE43646.1" FT /translation="MPVDSKHPLWLANQPRWERCRTALQGRDAVHAAGEKYLPKLAGQD FT KAEYDAYKGRAMFYGATARTEEALIGMVFRKEPTVTLPAALQPMIEDADLAGTPVDTFI FT ENVTKEVIDVTRVGVLVDYPVASGEFMTVGQAQAAGMRPYLATYKAEAIINWRTARVRG FT VNQLVLVVLAECYTDPKDEFTAEEKTQYRVLDLVDGFYRVRIYRTDLNTPAFEYTPMMN FT GKRLPYIPFVLIGRNGEAIDPQKPVLLDLVDVNMSHYRGTADYEHALHFTALPTAVVIG FT HELKEGQALKIGSSEAWVFTDPQADAKYLEFSGQGLDSIKVSLERKEGMMATLGARILA FT PEKRDAEAAETAKIHRAGENSVLGGIALGVGRSLAKAFRWAAEWAGAGSGTVEVKLNTE FT FFPAGLTAQDLTALVGALQAAAISPQTFYDNMRRGSIIDDGVTFEEEQDRIEAAGPALG FT TLGGQDVKPANGAV" FT CDS complement(116423..117700) FT /transl_table=11 FT /locus_tag="BP3384" FT /product="putative phage terminase" FT /note="Similar to Bacillus subtilis PBSX phage terminase FT large subunit XtmB SW:XTMB_BACSU (P39786) (433 aa) fasta FT scores: E(): 0.39, 21.1% id in 417 aa, and to Yersinia FT pestis hypothetical protein YPMT1.24c TR:O68741 FT (EMBL:AF074611) (418 aa) fasta scores: E(): 9.3e-18, 27.23% FT id in 437 aa" FT /db_xref="InterPro:IPR004921" FT /db_xref="UniProtKB/TrEMBL:Q7VTW6" FT /protein_id="CAE43647.1" FT /translation="MPTLNQPQARFLALPHKFRAFVAGFGSGKTWVGGAGLCRHAWEFP FT RVNSGYFAPTYGQIRDIFYPTIEEVAHDWGLAAKINESNKEVHLFAGRKYRGTVICRSM FT EKPGDIVGFKIGKGLIDELDVMKADKAALAWRKIIARLRHTAPGLLNGVDVTTTPEGFK FT FVYQQFVKQVRERPELAALYGLVQASTYENGKNLPEDYIPSLRASYPPQLIAAYLRGQF FT TNLTSGSVYANFDRRLHHTDAAEEPHEELHIGMDFNVLNMTATVNVIRAGLPLTVGELT FT KVRDTPEMARMLKERFKDKGHGVTIYPDASGGNTSSKNASESDLSILRKAGFTVRVNSR FT NPSVKDRINAVNGMLLNDEGARRWLVNTDRCPTLTEALEQQVYDKNGEPDKSTGHDHPN FT DAQGYFLVHRYPITPTGMSRIKLTGT" FT misc_feature complement(117611..117634) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(117687..118136) FT /transl_table=11 FT /locus_tag="BP3385" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Lactococcus lactis bacteriophage Tuc2009 FT hypothetical protein TR:Q9AYX3 (EMBL:AF109874) (153 aa) FT fasta scores: E(): 1.9e-11, 44.11% id in 102 aa, and to FT Bacillus halodurans hypothetical protein BH3534 TR:Q9K739 FT (EMBL:AP001519) (159 aa) fasta scores: E(): 7.4e-10, 41.12% FT id in 107 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VTW5" FT /protein_id="CAE43648.1" FT /translation="MARPSKYQPAFAEQAAKLCRLGATDKDLADFFHVTERTLNTWKKQ FT IPGFLQALNGGKVMADAEVADRLYQRALGYTHVEDDIRVCDGVIITTPTTRHYPPDTTA FT CIFWLKNRRPDLWRDKPDPTNDDNAPPPVKVVIEVVNTSIPDADA" FT CDS complement(118812..119762) FT /transl_table=11 FT /locus_tag="BP3386" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR012337" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE43649.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 118812..118843 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(118812..119864) FT misc_feature complement(118848..119381) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(119833..119864) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 119882..120001 FT /pseudo FT /transl_table=11 FT /locus_tag="BP3387" FT /product="phage-related hypothetical protein (pseudogene)" FT /note="This CDS is disrupted by the insertion of IS481 FT element. No significant database matches" FT /db_xref="PSEUDO:CAE43650.1" FT CDS 120016..120714 FT /transl_table=11 FT /locus_tag="BP3388" FT /product="phage-related putative membrane protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VTW4" FT /protein_id="CAE43651.1" FT /translation="MSGRLLLRRCGGGQSSMGASLKVGIGSLAELLGQATNALLVSIRS FT QQIGPLQRKPLPSCEVENVAAVGRPQSVPAERRIGDSYTFLIYAGGTRLKLFDRIALFL FT WRDRYDYDPTRGCPGEQNNISLWTRLRPARKRLIAVLLNGQLWLAFIGGMFALGAALLP FT GYLDRVKTDQQVNTNTGELLLRCVQEANHVLRCRPVSDEQDEIVSGVDGPSLDSNRPGR FT ESPAQDVKHE" FT misc_feature 120445..120513 FT /note="1 probable transmembrane helix predicted for BP3388 FT by TMHMM2.0 at aa 144-166" FT CDS 120707..121027 FT /transl_table=11 FT /locus_tag="BP3389" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VTW3" FT /protein_id="CAE43652.1" FT /translation="MSNLLLGLGGQLGPDAGPVAGTQITAAYFAAGGPLYRCAMLDRNR FT SAARAPLIDECRGHSDLARQRCSTGGVFPVEIAIQVHGPNYSVATVQTQAMLQNNLNSI FT AI" FT CDS 121507..122118 FT /transl_table=11 FT /locus_tag="BP3390" FT /product="putative phage repressor protein" FT /note="No significant database matches to the full length FT CDS. C-terminus is similar to the C-terminal region of FT bacteriophage D3 repressor protein cI SW:RPC1_BPD3 (Q37906) FT (223 aa) fasta scores: E(): 1.9e-05, 28.67% id in 143 aa, FT and to Neisseria meningitidis putative regulator nma1884 FT TR:Q9JTC1 (EMBL:AL162757) (234 aa) fasta scores: E(): FT 7e-06, 28.72% id in 188 aa" FT /db_xref="InterPro:IPR015927" FT /db_xref="InterPro:IPR019759" FT /db_xref="UniProtKB/TrEMBL:Q7VTW2" FT /protein_id="CAE43653.1" FT /translation="MRIGGVPAPWEPGGTTTRQMERHSQGLRISQAVNVGHVEDSGYSA FT NDHEFIPIPELDVRLAAGKLGIENYQETEIGQILLRRSFLESFKRPIKRMRICYGNGPS FT MEPVIRHRNPMLVDVHPVSLDEVQPRFVYAINRGGKMIVKCLERWKDGRWMAISTNPDP FT DHHPFPLATDDGGEVRIIGTVLWSPYDLRNGVDERLLQGW" FT CDS 122184..122396 FT /transl_table=11 FT /locus_tag="BP3391" FT /product="conserved hypothetical protein" FT /note="Poor database matches. Similar to Neisseria FT meningitidis hypothetical protein NNMB2100 TR:Q9JXD3 FT (EMBL:AE002559) (77 aa) fasta scores: E(): 2.4, 35.29% id FT in 51 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VTW1" FT /protein_id="CAE43654.1" FT /translation="MYMNIDNTLIQAVVVAGVILLLILWICLPFAVFGVKRRLDRIIRL FT LEQQQSAPQPERRTDSEPFVSRSLR" FT misc_feature 122220..122288 FT /note="1 probable transmembrane helix predicted for BP3391 FT by TMHMM2.0 at aa 13-35" FT CDS complement(122648..123598) FT /transl_table=11 FT /locus_tag="BP3392" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR012337" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE43655.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 122649..122679 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(122649..123700) FT misc_feature complement(122684..123217) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(123669..123700) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(123697..124497) FT /transl_table=11 FT /locus_tag="BP3393" FT /product="putative inner membrane protein" FT /note="Similar to Rhizobium meliloti putative transmembrane FT protein smc02882 TR:CAC41594 (EMBL:AL591782) (244 aa) fasta FT scores: E(): 0.09, 24.64% id in 211 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VTW0" FT /protein_id="CAE43656.1" FT /translation="MTVPRPESIIPPAGNAATGAAGIARAFKRALVSQCHPNMLFAVLL FT PFLIALLGAILLLWLFWTPLNEWLRFEASQWQAINQVDDWMVAAGLFSLKIYLVPVIAA FT AILLPISGILGLAIAAVFVMPLVLRHVGGREYAGLARQGRNATAVSVWNALWVSLAFGA FT GWLLTLPFWLIPPMVVILSVFWWAFAFTRMLRLDAIVEHASPAERAILLKRHNSGFWLI FT GLVCSLLNLLPPAWIILPVFSGLVYAHYGLDALQRLRQERAIDV" FT misc_feature complement(join(123778..123843,123928..123984, FT 123997..124053,124117..124209,124312..124377)) FT /note="5 probable transmembrane helices predicted for FT BP3393 by TMHMM2.0 at aa 40-62, 96-127, 148-167, 171-190 FT and 218-240" FT CDS 124496..124942 FT /transl_table=11 FT /locus_tag="BP3394" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum putative FT thioredoxin-like protein Rsc0067 or Rs02246 SWALL:Q8Y3B3 FT (EMBL:AL646057) (129 aa) fasta scores: E(): 7.1e-20, 51.12% FT id in 133 aa" FT /db_xref="GOA:Q7VTV9" FT /db_xref="InterPro:IPR012335" FT /db_xref="InterPro:IPR012336" FT /db_xref="InterPro:IPR015467" FT /db_xref="InterPro:IPR017936" FT /db_xref="UniProtKB/TrEMBL:Q7VTV9" FT /protein_id="CAE43657.1" FT /translation="MARPENGYAGYDSQTRCDLPTMPLHVPGSDIPTLRAALARSDAWL FT VACFCAAWCDTCQQYRPKLLELARARPGHTFAWIDIEDHPDLLGEEDVENFPTLLVQAH FT GKVLFYGPMLPHIGHLERLLDSLDPQGRPVATGLPDVARLLAAA" FT CDS complement(124954..126387) FT /transl_table=11 FT /locus_tag="BP3395" FT /product="putative ATP-dependent RNA helicase" FT /note="Similar to Escherichia coli putative ATP-dependent FT RNA helicase RhlE or b0797 SW:RHLE_ECOLI (P25888) (454 aa) FT fasta scores: E(): 9e-72, 50% id in 456 aa" FT /db_xref="GOA:Q7VTV8" FT /db_xref="HSSP:1HV8" FT /db_xref="InterPro:IPR000629" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR011545" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR014014" FT /db_xref="InterPro:IPR014021" FT /db_xref="UniProtKB/TrEMBL:Q7VTV8" FT /protein_id="CAE43658.1" FT /translation="MTESTSSDAPVTDAPTRTFADFGLHPLLLKLIADTGYTNPTPIQA FT QAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHRLMPLANTSASPARHPVRALILTPTRE FT LADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRLLDHVEQKNV FT NLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQRQGLLFSATFSNEIRKLGRSYLNH FT PVEIEVAARNATADTVTQIAYQMHGDTKRAAVVHLVKSRGLKQVIVFSNTKIGTARLAR FT QLERDGVKAESIHGDKTQGDRMKALEAFKAGDLEVLVATDVAARGLDVAGVPCVINYDL FT PYNAEDYVHRIGRTGRAGASGEAIALFTADEERYLLDIEKLIKRQVPRGKLELPADLVA FT RSHGRDRDAPRERGADRHRGERCTSGAAAPRQPVDELFYKPYEPANGQPASPETPEQEG FT RSNAPKRQLAVLLGGSRKG" FT misc_feature complement(125314..125559) FT /note="HMMPfam hit to PF00271, Helicase conserved FT C-terminal domain" FT misc_feature complement(125665..126300) FT /note="HMMPfam hit to PF00270, DEAD/DEAH box helicase" FT misc_feature complement(125848..125874) FT /note="ScanRegExp hit to PS00039, DEAD-box subfamily FT ATP-dependent helicases signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature complement(126184..126207) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(126594..126923) FT /transl_table=11 FT /locus_tag="BP3396" FT /product="putative conserved inner membrane protein" FT /note="Similar to Streptomyces avermitilis hypothetical FT 10.3 kDa protein TR:BAB69324 (EMBL:AB070950) (97 aa) fasta FT scores: E(): 0.00047, 33.67% id in 98 aa, and to FT Staphylococcus aureus (strain N315) hypothetical protein FT Sas001 or Sav0011 TR:BAB56173 (EMBL:AP003129) (109 aa) FT fasta scores: E(): 0.19, 26.47% id in 102 aa" FT /db_xref="InterPro:IPR008407" FT /db_xref="UniProtKB/TrEMBL:Q7VTV7" FT /protein_id="CAE43659.1" FT /translation="MSDRDLYVYGAILLLTLCSVLTRAGFMLFGDYIPLPDGVRRALRY FT APAAALTAIVVPDLLPWKAGLGPAFDYKLVAGVLAIMAFLRTRSAVLVIVVGMVALWGL FT RWLAG" FT misc_feature complement(join(126612..126677,126837..126902)) FT /note="2 probable transmembrane helices predicted for FT BP3396 by TMHMM2.0 at aa 7-29 and 82-104" FT CDS complement(126926..127675) FT /transl_table=11 FT /locus_tag="BP3397" FT /product="putative inner membrane protein" FT /note="Similar to Rhodobacter sphaeroides putative membrane FT protein TR:Q9KX17 (EMBL:Y09560) (235 aa) fasta scores: E(): FT 1.5e-15, 28.94% id in 228 aa" FT /db_xref="InterPro:IPR011606" FT /db_xref="UniProtKB/TrEMBL:Q7VTV6" FT /protein_id="CAE43660.1" FT /translation="MASDPATSALEDARQARQERADAFRAGVRAITPALIATGTWGMVT FT GVAMVKSGLTESMALAMTLLMYAGSAQLTSLPLIATGAPLWLIFAAGFVVNLRFLIFGA FT ALHPYFRHMSWPRRLGLGYFTTDMGFVLFMPRFGDAAERGTREQLWFFLGTVAPGWMVW FT QVTSIVGIYLGSLVPEAWSLDFAAVLALLAITVPLANSKPMLVSMLAAGMVAWVGQLLP FT LRLGLAAAVVAGIVAGIWAERFFKGRT" FT misc_feature complement(join(126950..127015,127076..127132, FT 127163..127228,127265..127318,127349..127414, FT 127436..127501,127532..127597)) FT /note="7 probable transmembrane helices predicted for FT BP3397 by TMHMM2.0 at aa 26-48, 58-80, 87-109, 119-137, FT 149-171, 181-200 and 220-242" FT CDS 127858..128778 FT /transl_table=11 FT /gene="ilvE" FT /locus_tag="BP3398" FT /product="branched-chain amino acid aminotransferase" FT /EC_number="2.6.1.42" FT /note="Similar to Escherichia coli, and branched-chain FT amino acid aminotransferase IlvE or b3770 or z5281 or FT ecs4704 SW:ILVE_ECOLI (P00510) (308 aa) fasta scores: E(): FT 1.4e-55, 48.19% id in 305 aa, and to Pseudomonas aeruginosa FT branched-chain amino acid aminotransferase IlvE or pa5013 FT SW:ILVE_PSEAE (O86428) (307 aa) fasta scores: E(): 2.5e-82, FT 65.68% id in 306 aa" FT /db_xref="GOA:Q7VTV5" FT /db_xref="HSSP:1IYE" FT /db_xref="InterPro:IPR001544" FT /db_xref="InterPro:IPR005785" FT /db_xref="UniProtKB/TrEMBL:Q7VTV5" FT /protein_id="CAE43661.1" FT /translation="MSMSDRDGFIWYDGKLVPWREATTHVLTHSLHYGLSVFEGVRAYE FT TAAGTAIFRLQDHTNRLFNSAHIYQIPLPYDRDTLNEAQREVVRANGLASCYLRPLAFY FT GSEKMGVSPKGAQVHVAIAAWPWGAYLGETALAQGIRVKVSSFARQHVNVTMPRAKVAT FT TYANSIIANAEALQDGYNEALLLDTEGFVAEGAGENIFIVKDGVLCEPEIASALTGITR FT STIHALAADLGLRVVTKRLTRDDVYIADEAFFTGTAAEVTPIREVDNRQIGAGRRGPVT FT EKLQQAFFDLVNGRNPKYQHWLTPV" FT misc_feature 127894..128724 FT /note="HMMPfam hit to PF01063, Aminotransferase class IV" FT CDS 128825..129037 FT /transl_table=11 FT /locus_tag="BP3399" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein NMA0721 TR:Q9JVS1 (EMBL:AL162754) (67 aa) fasta FT scores: E(): 6.4e-07, 48.27% id in 58 aa" FT /db_xref="InterPro:IPR019401" FT /db_xref="UniProtKB/TrEMBL:Q7VTV4" FT /protein_id="CAE43662.1" FT /translation="MTAAAQAAVPAHDAIEVGAEDLPVYCPGPKAPLWSMHPRVFLDVT FT HTGQASCPYCGAAYRLKPGTVVHGH" FT CDS 129060..129482 FT /transl_table=11 FT /locus_tag="BP3400" FT /product="hypothetical protein" FT /note="No significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VTV3" FT /protein_id="CAE43663.1" FT /translation="MFATPDEAEHAFYEALEHADLDRLMQVWSDDEEIACIHPGGLRIV FT GHTAVHESWQQVLANGPLHLRPLRPLVMQSMMCAVHVLVEQVTVMTREGAQFANCYATN FT AYHKGPAGWRMVLHHASQAPAEAGVLDLHDFPDRLH" FT CDS 129499..130599 FT /transl_table=11 FT /locus_tag="BP3401" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli hypothetical protein FT YheT or b3353 SW:YHET_ECOLI (P45524) (340 aa) fasta scores: FT E(): 1.1e-31, 36.8% id in 269 aa" FT /db_xref="GOA:Q7VTV2" FT /db_xref="InterPro:IPR000073" FT /db_xref="InterPro:IPR012020" FT /db_xref="UniProtKB/TrEMBL:Q7VTV2" FT /protein_id="CAE43664.1" FT /translation="MAASRIDLTPCPVPPWLPDRHSQTVYAAALAQYHRIAFVRERVDT FT PDTDFVDFDWTGPGLFPHKTAEGAAPAGPAPQGNGRIAAARWITATDWASLPQTADTPA FT LILFHGLEGGSASRYAQSIAHYFRARGWIVVIAHFRGCSGVPNRLARAYYSGDSAEVGF FT MLDTVRARIPHARWHAVGVSLGGNALLKYLGEHHDEASWLAAAAGVSVPLDLVAGGKAL FT CTGFIARRIYTAYFLKTMRRKVLEKAKRFPGAIDVIRIAHARDLRDFDDAYTARMHGYR FT NALDYWTRASSKPWLAHIKTPTLVLNARNDPFLPESALPIPAECSDSVLLHQPAEGGHA FT GFPTGPFPAHLNWLPQRLGRFFEMGS" FT CDS complement(130696..132213) FT /transl_table=11 FT /locus_tag="BP3402" FT /product="putative exported protein" FT /note="Similar to Vibrio cholerae hypothetical protein FT Vc2164 TR:Q9KQ40 (EMBL:AE004288) (484 aa) fasta scores: FT E(): 8.4e-33, 31.91% id in 495 aa" FT /db_xref="GOA:Q7VTV1" FT /db_xref="InterPro:IPR001915" FT /db_xref="InterPro:IPR011717" FT /db_xref="InterPro:IPR011990" FT /db_xref="UniProtKB/TrEMBL:Q7VTV1" FT /protein_id="CAE43665.1" FT /translation="MNRWNLTFSPSLGRRALAAALSLALGLPVAPAVGQPSGLPSMGAA FT SASELSPMLERQLGDAIMAQGRRDPTYINDPELRQYLTTMGRKLASFAPGAAPHVEMFG FT VRDPEINAFAMPGGYIGVNTGLIVSSASESELAAVLAHEIGHVAQRHIARGMTQQNQNS FT MVMLASLAGALLAALAGGGGNLAMGVAAFGQAAAINRQLGFSRDAEREADRTGLQMLAK FT AGYDPDGMAQMFSRLMNASRLNEGMGGGAWASTHPLSIDRMSDVQNRIRGLPGSRHVDS FT DGFWFIRAKMRVAQGRDALSLRTAQQQLQDESRALSGVRQAAAFYGLALYAFQRNDLAQ FT ARAFLEQAGAGGRSSPQMARLAIDVAVAAKDNDQALALAQAAVKRWPDRKALGIAYAQA FT LQAAGRHADAQAYLRERARQWGGDEPSLYQLLAQSEERTGHPVDARRNMARYYDLTGAY FT ASAESQLQQARGLSNDFYEQSQIDVSIREIKQKLADERQLLERFKSG" FT misc_feature complement(131605..131679) FT /note="ScanRegExp hit to PS00583, pfkB family of FT carbohydrate kinases signature 1." FT misc_feature complement(132112..132213) FT /note="Signal peptide predicted for BP3402 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.802 between residues 34 and 35" FT CDS 132220..133128 FT /transl_table=11 FT /locus_tag="BP3403" FT /product="putative UTP--glucose-1-phosphate FT uridylyltransferase" FT /note="Similar to Bacillus subtilis FT UTP--glucose-1-phosphate uridylyltransferase GtaB FT SW:GTAB_BACSU (Q05852) (292 aa) fasta scores: E(): 1.3e-50, FT 54.68% id in 267 aa" FT /db_xref="GOA:Q7VTV0" FT /db_xref="InterPro:IPR005771" FT /db_xref="InterPro:IPR005835" FT /db_xref="UniProtKB/TrEMBL:Q7VTV0" FT /protein_id="CAE43666.1" FT /translation="MIARGGKKFAASTNFPALPPGVFMQVVRKAVFPVAGMGTRFLPAT FT KAMPKEMLPVVDKPLIQYAVEEAVAAGITDLIFVTGRNKRAIEDHFDAAPELETDLEAK FT GKHELLALVRDILPAHVNCLYIRQSAPLGLGHAVLTAAPAVGNEPFAVLLADDLIDADT FT PVLKQLIDVAVARQGSVLGVQEVPREDTRKYGIVASQPVDARTERVTHIVEKPAPEQAP FT TTLAVVGRYVLEAAIFDHLRATTVGAGNEIQLTDGIAALLRERDVYAHRYDGKRYDCGS FT KAGMFQATVALGRKYHGLIPE" FT misc_feature 132304..133104 FT /note="HMMPfam hit to PF00483, Nucleotidyl transferase" FT CDS complement(133150..134031) FT /transl_table=11 FT /locus_tag="BP3404" FT /product="putative inner membrane protein" FT /note="Weakly similar to Streptomyces coelicolor putative FT integral membrane protein 2SCG58.15 TR:Q9FC98 FT (EMBL:AL391017) (316 aa) fasta scores: E(): 6.4e-07, 24.11% FT id in 282 aa" FT /db_xref="InterPro:IPR019108" FT /db_xref="UniProtKB/TrEMBL:Q7VTU9" FT /protein_id="CAE43667.1" FT /translation="MTRMDWLEWLIPWEFSPTLVAAFVVAIVLFVRGQRVHHVTAARQW FT LFWSGMVLLYLSMHTRLDYYAERMFFIHRAQHLVLHHLGPLLVMAAFPGSAMRAGLPMA FT WRVRLRDFLRTGTGRALAAVLTHKVFVPTLFVFLVLVWLLPSVQFYSMLDWRLYRLMNW FT SVVISGFMYWNLILDRRPSPPAAMTPGGRVLSPALTMAPQMVAGAVIAFTERDLYPLFE FT LCGRAIAMSAQTDQTIGGLTMWIPAALVEVVGLLVALGTLMRLSGKGRLRPQDRAARAR FT QRAAGSPTSPAA" FT misc_feature complement(join(133246..133311,133396..133461, FT 133501..133557,133603..133668,133729..133794, FT 133840..133896,133936..134001)) FT /note="7 probable transmembrane helices predicted for FT BP3404 by TMHMM2.0 at aa 10-32, 45-64, 79-101, 121-143, FT 158-177, 190-212 and 240-262" FT CDS complement(134113..135207) FT /transl_table=11 FT /gene="ompQ" FT /locus_tag="BP3405" FT /product="outer membrane porin protein OmpQ" FT /note="Previously described as Bordetella pertussis OmpQ FT TR:Q45342 (EMBL:U16266) (364 aa) fasta scores: E(): FT 1.5e-148, 99.72% id in 364 aa. Similar to Bordetella FT pertussis outer membrane porin protein precursor FT SW:OMP_BORPE (Q04064) (385 aa) fasta scores: E(): 2.4e-13, FT 34.25% id in 400 aa, and to Neisseria meningitidis major FT outer membrane protein Porb or nma0398 SW:OMB_NEIMA FT (P57042) (329 aa) fasta scores: E(): 7e-05, 24.5% id in 351 FT aa" FT /db_xref="GOA:Q8VV98" FT /db_xref="InterPro:IPR001702" FT /db_xref="InterPro:IPR002299" FT /db_xref="UniProtKB/TrEMBL:Q8VV98" FT /protein_id="CAE43668.1" FT /translation="MRRLLVVAAMAAGSSSVFWSVAPARAANQLELYGVVDVGLATTRV FT SGLGTRQQVLGGGQTDNLWGLRGTEELDGGWRASFGLESGFDAANGTRNDDARLFDYGT FT WVGLGHAGVGELSLGRQQSIGLQYGGQLEIASWRDMGMGALFKASDNYRVNNLVNYLSP FT EFSGWQWGVGYAFDVESGDTGRFDRSPAFSTGLKYEDGPLLAAFTWDKLNLHDTSATGG FT RSPQALQAGFTYDFEALKMALAWSRQRNGFVGLNGGGQIGLGPEPFAHGGAINAWLLGL FT EVPVHGNGAWLVQGSMARPDWHWANGQQASKAYVVTLGYRQDLSARTSLYAYGGYMKGY FT DPEDPFASDVGRATRFGVGMTQRF" FT misc_feature complement(135130..135207) FT /note="Signal peptide predicted for BP3405 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.963 between residues 26 and 27" FT repeat_region 135378..135406 FT /note="Inverted repeat for IS481-like element BP3407" FT repeat_region 135378..135500 FT /note="The 5' end of the IS481-like element, IS1662, FT encoding BP3407. This IS element was itself disrupted by FT the insertion of a IS481" FT CDS join(135468..135503,136553..137467) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3407" FT /product="transposase for IS1002 (pseudogene)" FT /note="Pseudogene. Transposase for IS1002 element. FT Disrupted by the insertion of IS481 element" FT /db_xref="PSEUDO:CAE43669.1" FT CDS complement(135501..136451) FT /transl_table=11 FT /locus_tag="BP3406" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA9" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR012337" FT /db_xref="UniProtKB/TrEMBL:Q7TTA9" FT /protein_id="CAE43670.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHYYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT repeat_region 135501..135532 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(135501..136553) FT misc_feature complement(135537..136070) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(136522..136553) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 136553..137467 FT /note="The 3' end of the IS41002 element. This IS element FT was itself disrupted by the insertion of a IS481" FT misc_feature 136898..137422 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(137439..137467) FT /note="Inverted repeat for IS481-like element BP3407" FT repeat_region 137464..137495 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 137464..138516 FT CDS 137566..138516 FT /transl_table=11 FT /locus_tag="BP3408" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q84CT8" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR012337" FT /db_xref="UniProtKB/TrEMBL:Q84CT8" FT /protein_id="CAE43671.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT misc_feature 137947..138480 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(138485..138516) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(138600..138959) FT /transl_table=11 FT /locus_tag="BP3409" FT /product="hypothetical protein" FT /note="No significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VTU8" FT /protein_id="CAE43672.1" FT /translation="MRFFDLFLRRAGVDRTHALSQRRGTSRLTFVCPRDALGAVRKQIC FT LDFSAAGLSVAQFQVDSGRDAELASACITVSCPPELRAELMSQARRLSANPAVQQLRFG FT AAEPAGARACAEAVA" FT CDS complement(139341..140378) FT /transl_table=11 FT /locus_tag="BP3410" FT /product="putative inner membrane protein" FT /note="Similar to Treponema pallidum conserved hypothetical FT integral membrane protein tp1034 TR:O83997 (EMBL:AE001271) FT (341 aa) fasta scores: E(): 0.00026, 26.87% id in 346 aa, FT and to Escherichia coli hypothetical protein YrbG or b3196 FT SW:YRBG_ECOLI (P45394) (325 aa) fasta scores: E(): 0.016, FT 25.64% id in 351 aa" FT /db_xref="GOA:Q7VTU7" FT /db_xref="InterPro:IPR004837" FT /db_xref="UniProtKB/TrEMBL:Q7VTU7" FT /protein_id="CAE43673.1" FT /translation="MFITLLLFFLSAAIIYFACEFFVNGVEWVGHRFKLGATATGTVLA FT AFGTALPESAVTFMAVVFGTTPEQKDIGVGAAMGGPLVLATLAYAVVGLTLARTRRAGS FT SQVEAAINADQRRLARDQAWFMGVFVFKVALGLLAFAWKPWLGLLFLAVYGLYVKRELT FT REEECLDCEDLEPLKLRPRDPSPSLFWACAQTVLALAVIALASHVFVRQIELLGLAMGA FT SPHVAALLLAPVATELPEIMNALIWVRQGKERLALANISGAMMIQATIPSAMMIQATIP FT SALGIFLTPWLLDAPLLAAGGFTLAAILLLWLRFRRAAMSVPALSAVGGLYALFAGYLG FT WHFYA" FT misc_feature complement(join(139347..139412,139434..139499, FT 139545..139610,139749..139814,139953..140009, FT 140097..140162,140193..140258,140298..140363)) FT /note="8 probable transmembrane helices predicted for FT BP3410 by TMHMM2.0 at aa 5-27, 40-62, 72-94, 123-142, FT 188-210, 256-278, 293-315 and 322-344" FT misc_feature complement(139881..140342) FT /note="HMMPfam hit to PF01699, Sodium/calcium exchanger FT protein" FT misc_feature complement(140325..140378) FT /note="Signal peptide predicted for BP3410 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.925) with cleavage site FT probability 0.709 between residues 18 and 19" FT CDS 140695..142035 FT /transl_table=11 FT /locus_tag="BP3411" FT /product="putative Xaa-Pro aminopeptidase" FT /note="Similar to Pseudomonas aeruginosa aminopeptidase P FT PepP or pa5224 TR:Q9HTW6 (EMBL:AE004935) (444 aa) fasta FT scores: E(): 7.3e-84, 51.14% id in 436 aa, and to FT Escherichia coli Xaa-Pro aminopeptidase PepP or b2908 FT SW:AMPP_ECOLI (P15034) (440 aa) fasta scores: E(): 2.2e-66, FT 44.95% id in 436 aa" FT /db_xref="GOA:Q7VTU6" FT /db_xref="HSSP:1A16" FT /db_xref="InterPro:IPR000994" FT /db_xref="InterPro:IPR001131" FT /db_xref="InterPro:IPR007865" FT /db_xref="UniProtKB/TrEMBL:Q7VTU6" FT /protein_id="CAE43674.1" FT /translation="MSLPPDDIAPFAARRRRLMDHMRAAGGGIAILPTAPQALRNRDAE FT YPYRHDSDFFYLTGFTEPEAWLVLVAGATDRALLFCRDKHPEHEIWEGFRFGPEAAAAR FT FGFDDAHGIGTLDELVPALLLDQPALWTPVAASAALDERVRSWLAAARAQGRSGRLAPA FT VLRDPAPVLAGMRLVKDAAEIAAMRRAAKISAAAHQRAMRAARPGMREYELEAELLYEF FT RRQGAQSVAYNSIVAAGANACVLHYPAGDAELRDGDLVLIDAGCEYDSYAADITRTFPV FT NGRFSGPQRALYDLVAHAQEAAVAATGPGRSWNDGHEAAVRVLAQGMLDEKLLTGSLDG FT VLESGAYSRFYMHRTGHWLGLDVHDVGDYRGAGPAGAQRPWRMLEPGMMLTVEPGIYVR FT AADDVPARFWDIGIRIEDDALVTEEGCELITRGVPVQAREIEALMRE" FT misc_feature 141223..142011 FT /note="HMMPfam hit to PF00557, metallopeptidase family M24" FT misc_feature 141751..141789 FT /note="ScanRegExp hit to PS00491, Aminopeptidase P and FT proline dipeptidase signature. Confirmed by InterPro eMOTIF FT pattern match." FT CDS complement(142045..142497) FT /transl_table=11 FT /locus_tag="BP3412" FT /product="putative inner membrane protein" FT /note="No significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VTU5" FT /protein_id="CAE43675.1" FT /translation="MTQAHLSVPGAARRPRSKIALGLLACALGWIGAHWWYLGRRRAWM FT VTLAAILCLAATQWFPVWYDNPAFFLLFIPMIDGFIEGVVFSLMPDEKFDRLYNPGLGQ FT VSRTGWGPVLVAISGVLVGAIASMFAVAMVVVYTWVAMGWLDGYVF" FT misc_feature complement(join(142075..142167,142231..142296, FT 142312..142368,142384..142437)) FT /note="4 probable transmembrane helices predicted for FT BP3412 by TMHMM2.0 at aa 20-38, 43-62, 67-89 and 110-141" FT CDS 142594..143775 FT /transl_table=11 FT /locus_tag="BP3413" FT /product="putative monooxygenase" FT /note="Similar to Pseudomonas aeruginosa UbiH protein or FT pa5223 TR:Q9HTW7 (EMBL:AE004935) (394 aa) fasta scores: FT E(): 1.1e-26, 37.34% id in 399 aa, and to Escherichia coli FT 2-octaprenyl-6-methoxyphenol hydroxylase UbiH or VisB or FT b2907 SW:UBIH_ECOLI (P25534) (392 aa) fasta scores: E(): FT 1.3e-25, 34.17% id in 398 aa" FT /db_xref="GOA:Q7VTU4" FT /db_xref="InterPro:IPR002938" FT /db_xref="InterPro:IPR003042" FT /db_xref="InterPro:IPR010971" FT /db_xref="InterPro:IPR018168" FT /db_xref="UniProtKB/TrEMBL:Q7VTU4" FT /protein_id="CAE43676.1" FT /translation="MRCMTLPAYDIAILGAGPVGRVLALLLARLTPQPQRIALLQGGAG FT LPPTPAGTLGPAADPRVLALNHGSRVLLESLRAWPAHAAEIRHIHVSQRGRLGRTVIDR FT EDFDVPQLGNVVAYAALHAQLEQAVQDCGVTVLSGPPARVDGQDGEGLTVRQGDAALHC FT RLAVQCDGAGGSDVRRDYAQHAVLTSAHATLPRSGWAWERFTNEGPLAMLPHPQTPEAY FT SVVWCCAPPRARRLAGLDDEAFSRELTEAFGTRLGRLRSAAPRHVFPLELKARHAQAHG FT RLATIGNAAQTLHPVAGQGLNLGLRDAAQLAHALPDWLAAPQADPSPLLATFARARLAD FT RWVTAGLTDLMPRIFATGLAPVEHACGLALLGLDIAAPLRAPLARHLLQGLRV" FT misc_feature 143077..143640 FT /note="HMMPfam hit to PF01360, Monooxygenase" FT misc_feature 143473..143514 FT /note="ScanRegExp hit to PS01304, ubiH/COQ6 monooxygenase FT family signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 143835..144866 FT /transl_table=11 FT /locus_tag="BP3414" FT /product="conserved hypothetical protein" FT /note="Similar to many eg. Escherichia coli hypothetical FT protein YhdG or b3260 or z4620 or ecs4132 SW:YHDG_ECOLI FT (P25717) (321 aa) fasta scores: E(): 1.6e-63, 55.76% id in FT 321 aa" FT /db_xref="GOA:Q7VTU3" FT /db_xref="InterPro:IPR001269" FT /db_xref="InterPro:IPR004652" FT /db_xref="InterPro:IPR013785" FT /db_xref="InterPro:IPR018517" FT /db_xref="UniProtKB/TrEMBL:Q7VTU3" FT /protein_id="CAE43677.1" FT /translation="MRMRIGPWSLPNNVLVAPMAGVTDRPYRQLCKRLGAGYAVSEMAA FT SNPRLWDSVKTSRRLNHEGEIDPISVQIAGADPTMMAEAAAFNVAKGARIIDINMGCPV FT KKVCNVASGSALLRHEDLIVRILEAVVAACAPLGVPVTLKTRTGWDREHRNALRVGRLA FT EQAGIAALTLHGRTRADLYTGQAEYDTIRAVKAELKIPVIANGDIDSPEKARQVLDYTG FT ADAVMIGRAAQGRPWIFREIDHYLRTGARLAPPSYGEMRDLLLEHLDDHYRFYGEHTGV FT RTARKHIGWYLDDLPGAAAFCARMNQIDNTREQWRAVADWFDTILREGRDQQAFVAQPL FT LAA" FT misc_feature 143877..144812 FT /note="HMMPfam hit to PF01207, Uncharacterized protein FT family UPF0034" FT misc_feature 144120..144176 FT /note="ScanRegExp hit to PS01136, Uncharacterized protein FT family UPF0034 signature. Confirmed by InterPro eMOTIF FT pattern match." FT CDS 144907..145146 FT /transl_table=11 FT /gene="fis" FT /locus_tag="BP3415" FT /product="DNA-binding protein" FT /note="Similar to Escherichia coli, DNA-binding protein Fis FT or b3261 or z4621 or ecs4133 or stm3385 or sty3565 FT SW:FIS_ECOLI (P11028) (98 aa) fasta scores: E(): 1.9e-07, FT 40.9% id in 66 aa" FT /db_xref="GOA:Q7VTU2" FT /db_xref="HSSP:1ETY" FT /db_xref="InterPro:IPR002197" FT /db_xref="InterPro:IPR005412" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR020441" FT /db_xref="UniProtKB/TrEMBL:Q7VTU2" FT /protein_id="CAE43678.1" FT /translation="MSKKDVLEECVRASLERYFEDLGDSEPHDMWDMVMRCVERPVLEV FT ALERSGGNQSRASEMLGITRNTLRKKLLAHNIQP" FT CDS 145216..146805 FT /transl_table=11 FT /gene="purH" FT /locus_tag="BP3416" FT /product="bifunctional purine biosynthesis protein" FT /EC_number="2.1.2.3" FT /EC_number="3.5.4.10" FT /note="Similar to Escherichia coli bifunctional purine FT biosynthesis protein PurH [includes: FT phosphoribosylaminoimidazolecarboxamide formyltransferase FT PurH or b4006 SW:PUR9_ECOLI (P15639) (529 aa) fasta scores: FT E(): 1.4e-112, 58.11% id in 530 aa" FT /db_xref="GOA:Q7VTU1" FT /db_xref="HSSP:1PKX" FT /db_xref="InterPro:IPR002695" FT /db_xref="InterPro:IPR011607" FT /db_xref="InterPro:IPR013982" FT /db_xref="UniProtKB/TrEMBL:Q7VTU1" FT /protein_id="CAE43679.1" FT /translation="MKIETALLSVSDKTGIVEFARALTARGVRLLSTGGTARLLSEAGL FT AVTEVAQHTGSPEILEGRVKTLHPKIHGGLLARRDSAEHMDTIAACGIDRIDMLVVNLY FT PFRETVAKPDCTFADAIENIDIGGPAMLRAAAKNHGTDAGGVTVVIDPADYSRVLAQMD FT QGGSTSYALRLELAAKVYSHTAAYDGAIAAYLTSLAEAAPAQDAVPARNEWPGTLTIQV FT RQEQALRYGENPHQTAAFYVDAQRPAGLLGNYRQLQGKELSYNNIADADAAWECVRSFD FT STACVIVKHANPCGVAIGDGTLHVYQQAFKTDPTSAFGGIIAFNRPVDAATAEAVSGQF FT LEVLLAPAYDGAALAILAAKKNVRVLEVPAGPGQNAFDIKRVGGGWLVQSPDAYNVPRD FT ALKVVSKRQPTEQEMNDLAFAWKVAKYVKSNAIVFVGGGMTLGVGAGQMSRIDSARIAS FT IKAENAGLTLRGSAVASDAFFPFRDGLDVVVAAGATCVIQPGGSVRDDEVIAAADEHGI FT AMVLTGTRHFRH" FT misc_feature 145231..145605 FT /note="HMMPfam hit to PF02142, MGS-like domain" FT misc_feature 145483..145512 FT /note="ScanRegExp hit to PS00339, Aminoacyl-transfer RNA FT synthetases class-II signature 2." FT misc_feature 145618..146598 FT /note="HMMPfam hit to PF01808, AICARFT/IMPCHase bienzyme" FT CDS 146805..147353 FT /transl_table=11 FT /gene="ruvC" FT /locus_tag="BP3417" FT /product="crossover junction endodeoxyribonuclease" FT /EC_number="3.1.22.4" FT /note="Similar to Escherichia coli crossover junction FT endodeoxyribonuclease RuvC or b1863 or z2915 or ecs2573 FT SW:RUVC_ECOLI (P24239) (172 aa) fasta scores: E(): 3.5e-21, FT 45.81% id in 179 aa" FT /db_xref="GOA:Q7VTU0" FT /db_xref="InterPro:IPR002176" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR020563" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTU0" FT /protein_id="CAE43680.1" FT /translation="MRVLGIDPGLRRTGFGVIDAEGMRLRYVASGTIVVPPALALPERL FT KVILDNLREVARETRPDVAALEIVFLNTNPASTLLLGQARGAALCALADSALDVHEYTA FT LQIKKAVMGTGRAAKEQVQMMVQRLLSLDGTPAPDSADALACAICHAHVGPLHDKLDRL FT GTAAQLGSRPRLRNGRLVG" FT misc_feature 146811..147254 FT /note="HMMPfam hit to PF02075, Crossover junction FT endodeoxyribonuclease RuvC" FT misc_feature 147240..147257 FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT CDS 147434..148006 FT /transl_table=11 FT /gene="ruvA" FT /locus_tag="BP3418" FT /product="holliday junction DNA helicase" FT /note="Similar to Escherichia coli holliday junction DNA FT helicase RuvA or b1861 or z2913 or ecs2571 SW:RUVA_ECOLI FT (P08576) (203 aa) fasta scores: E(): 5.8e-26, 45.32% id in FT 203 aa" FT /db_xref="GOA:Q7VTT9" FT /db_xref="InterPro:IPR000085" FT /db_xref="InterPro:IPR003583" FT /db_xref="InterPro:IPR010994" FT /db_xref="InterPro:IPR011114" FT /db_xref="InterPro:IPR012340" FT /db_xref="InterPro:IPR013849" FT /db_xref="InterPro:IPR016027" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTT9" FT /protein_id="CAE43681.1" FT /translation="MIGRITGTLIEKSPPVVCVDVNGVGYEIDVPMSTLYALPETGARV FT TLFTHLVVREDAQLLYGFGSSAERSTFRELIKVTGIGARTALAVLSGLSVAELSQAITL FT QETGRLTRVPGIGKKTAERLLLEMRGKLGADIGATPHAASGHQSDILNALLALGYSDKE FT SQAALKKLPDGVDVSEGIRLALKALVR" FT misc_feature 147434..147631 FT /note="HMMPfam hit to PF01330, RuvA N terminal domain" FT CDS complement(148025..148936) FT /transl_table=11 FT /locus_tag="BP3419" FT /product="conserved hypothetical protein" FT /note="Similar to many proposed oxidoreductases eg. FT Caulobacter crescentus NADH-ubiquinone oxidoreductase 39 FT kDa subunit precursor cc3604 TR:Q9A2G1 (EMBL:AE006018) (319 FT aa) fasta scores: E(): 1.6e-35, 39.8% id in 309 aa" FT /db_xref="GOA:Q7VTT8" FT /db_xref="InterPro:IPR001509" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VTT8" FT /protein_id="CAE43682.1" FT /translation="MRILVIGGTGFIGRHLVARLAAQEHKVLVPTRRYNKGRDLQVLPT FT VTLIEADVHDDAELDRLMHRCDAVVNLVGVLHGGRGRPYGAGFARAHVLLPERIAQACV FT RNGVARMLHVSALGADSGGPSMYLRSKGDGEAAIQRVFGATGGWTLFRPSVVFGPDDNF FT TRMFARLARLFPVLPLAGARSRMQPVYVGDVADAMMAALANGHTAGKIYELCGPQVYTL FT GEIVRLCALWSGHPRPVCEMPMALGRMQALLFECLPGDPLVSRDNLDSLTRDNVASGAA FT PSGLAAPPAALEAVAPAYLARR" FT CDS complement(149010..149978) FT /transl_table=11 FT /locus_tag="BP3420" FT /product="putative serine/threonine dehydratase" FT /note="Similar to Mus musculus serine racemase Srr FT TR:Q9QZX7 (EMBL:AF148321) (339 aa) fasta scores: E(): FT 1.7e-41, 42.85% id in 315 aa, and to Escherichia coli FT threonine dehydratase catabolic TdcB or b3117 or z4469 or FT ecs3997 SW:THD2_ECOLI (P05792) (329 aa) fasta scores: E(): FT 6.6e-34, 38.03% id in 305 aa" FT /db_xref="GOA:Q7VTT7" FT /db_xref="InterPro:IPR001926" FT /db_xref="UniProtKB/TrEMBL:Q7VTT7" FT /protein_id="CAE43683.1" FT /translation="MQPQLPTYADVEQAAATLAGVAHRTPVLTSATADAMAGAQVFFKC FT ENFQRMGAFKFRGGYNAIARLTPEQRRAGVVTFSSGNHAQAIALAARLQGVQATIIMPQ FT DAPAAKRAATEGYGGRVVTYDRYSEDREAIARRLHEETGATLIPPYDHADVIAGQGTAA FT KELFDEVGELDFLFVCLGGGGLLAGSALAARALSPACRVYGVEPAAGNDGQQSLRKGEI FT VTIAAPKSIADGAVTTHLGRLTFAIIQQQVADILTVSDAELVQSMRFFAERMKMVVEPT FT GCLAATAALRKLIPEAAGKRVGVIISGGNVDLPVYARLLAD" FT misc_feature complement(149052..149927) FT /note="HMMPfam hit to PF00291, Pyridoxal-phosphate FT dependent enzyme" FT CDS 150101..151174 FT /transl_table=11 FT /gene="ruvB" FT /locus_tag="BP3421" FT /product="holliday junction DNA helicase" FT /note="Similar to Escherichia coli holliday junction DNA FT helicase RuvB or b1860 or z2912 or ecs2570 SW:RUVB_ECOLI FT (P08577) (336 aa) fasta scores: E(): 5.3e-76, 68.97% id in FT 332 aa" FT /db_xref="GOA:Q7VTT6" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR003959" FT /db_xref="InterPro:IPR004605" FT /db_xref="InterPro:IPR008823" FT /db_xref="InterPro:IPR008824" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTT6" FT /protein_id="CAE43684.1" FT /translation="MAIQSDSLSSLPDSPRIVAPQPVSPNEESIERALRPKALEEYVGQ FT QRAREQLEIFIAAARKRGEALDHVLLFGPPGLGKTTLAHIIAHEMGVQLRQTSGPVLER FT PGDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDFQIDILIGEGPAARSVKLDL FT QPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNTDELARIVTRSASLLNADITADGAHE FT VARRSRGTPRIANRLLRRVRDYAQVKSHGVIDQDAAGRALAMLDVDPQGLDVMDRKLLE FT AIVHKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQHGYLQRTPRGRTATLTTWRHLG FT LTPPAAASGGTGELFSK" FT misc_feature 150302..150841 FT /note="HMMPfam hit to PF00004, ATPase family associated FT with various cellular activities (AAA)" FT misc_feature 150317..150340 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(151179..152999) FT /transl_table=11 FT /locus_tag="BP3422" FT /product="ATP-dependent DNA helicase" FT /product="putative ATP-dependent DNA helicase" FT /note="Similar to Escherichia coli ATP-dependent DNA FT helicase RecQ or b3822 SW:RECQ_ECOLI (P15043) (607 aa) FT fasta scores: E(): 2.3e-87, 45.07% id in 599 aa" FT /db_xref="GOA:Q7TTN9" FT /db_xref="HSSP:1OYY" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR002121" FT /db_xref="InterPro:IPR004589" FT /db_xref="InterPro:IPR006293" FT /db_xref="InterPro:IPR010997" FT /db_xref="InterPro:IPR011545" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR014021" FT /db_xref="InterPro:IPR018329" FT /db_xref="InterPro:IPR018982" FT /db_xref="UniProtKB/TrEMBL:Q7TTN9" FT /protein_id="CAE43685.1" FT /translation="MSDPRALGVLARVFGYESFRGDQQAIVEHVIGGGDALVLMPTGGG FT KSLCYQVPALVREGTGIVVSPLIALMQDQVDALTELGVRAAFLNATQDWRVAREVEQAF FT LAGELDLLYVAPERLLTDRCLQLLERGRIALFAIDEAHCVSQWGHDFRPEYLGLSMLHE FT RWPEVPRIALTATATAATRSEIAQRLALDEARHFVASFDRPNIRYRIVEKNEVRRQLLD FT LIRSEHEGESGVVYGLSRARVEETADFLCANGVNALPYHAGLSPAVRAANQARFLREDG FT IVMVATIAFGMGIDKPDVRFVAHIDLPKSVEGYYQETGRAGRDGLPASAWLAYGLQDVV FT QQRRMIDESPGDDAYRRRLGQQLDAMLGLCETVECRRVRLLAYFGQTITACGNCDVCLE FT PPQAWDGTVAAQKVLSAVYRLWKERGQRYGAGHIIDILRGKSTDRTRQHDHETLSVFGV FT GADLSENAWRGVLRQLLAQGLLAVDHEGFGTLALTEGSRAVLKGEHQLMLRREAEKKPR FT SSRAGARARPDPIDLPAEAKPVFESLRSWRGEVAKSNGVPAYVIFHDATLREIALARPE FT SLDDLSHISGVGARKLQAYGEEILRCVQRP" FT misc_feature complement(151185..151403) FT /note="HMMPfam hit to PF00570, HRDC domain" FT misc_feature complement(152025..152270) FT /note="HMMPfam hit to PF00271, Helicase conserved FT C-terminal domain" FT misc_feature complement(152361..152975) FT /note="HMMPfam hit to PF00270, DEAD/DEAH box helicase" FT CDS complement(153076..154026) FT /transl_table=11 FT /locus_tag="BP3423" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTB4" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR012337" FT /db_xref="UniProtKB/TrEMBL:Q7TTB4" FT /protein_id="CAE43686.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI" FT repeat_region 153076..153107 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(153076..154128) FT misc_feature complement(153112..153645) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(154097..154128) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 154124..154450 FT /pseudo FT /transl_table=11 FT /locus_tag="BP3424" FT /product="putative exported protein (pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481. No significant database matches" FT CDS 154584..155234 FT /transl_table=11 FT /locus_tag="BP3425" FT /product="putative carbonic anhydrase" FT /note="Similar to Rhizobium meliloti putative carbonic FT anhydrase protein TR:CAC47897 (EMBL:AL591793) (227 aa) FT fasta scores: E(): 3.7e-41, 50.47% id in 210 aa, and to FT Escherichia coli carbonic anhydrase CynT or b0339 or z0435 FT or ecs0392 SW:CYNT_ECOLI (P17582) (219 aa) fasta scores: FT E(): 1.1e-17, 31.4% id in 207 aa" FT /db_xref="GOA:Q7VTT5" FT /db_xref="HSSP:1EKJ" FT /db_xref="InterPro:IPR001765" FT /db_xref="InterPro:IPR015892" FT /db_xref="UniProtKB/TrEMBL:Q7VTT5" FT /protein_id="CAE43688.1" FT /translation="MFPKRLTDGYHAFLQGRFHSERSRYEALAEKGQKPEILLIGCCDS FT RVSPEVIFDAGPGEIFVVRNVANLVPPCEPDAESSFHGTSAAIEFAVNGLNVKHIVVLG FT HASCGGIRSFYDDGEPLSKMDFIGKWMSQISPVAERLGPSTGDRATDIKRLELAVVEES FT LRNLMTFPSISSRVERGELELHGTYFGVATGLLYVLDRATGQFAPWLEEDAAA" FT misc_feature 154620..155165 FT /note="HMMPfam hit to PF00484, Carbonic anhydrase" FT CDS complement(155256..156674) FT /transl_table=11 FT /locus_tag="BP3426" FT /product="putative amidase" FT /note="Similar to Mycobacterium smegmatis FT nicotinamidase/pyrazinamidase PzaA TR:Q9ZHK8 FT (EMBL:AF058285) (468 aa) fasta scores: E(): 1.4e-42, 37.21% FT id in 481 aa, and to Pseudomonas putida amidase FT SW:AMID_PSEPU (O69768) (466 aa) fasta scores: E(): 4.4e-35, FT 37.75% id in 482 aa" FT /db_xref="GOA:Q7VTT4" FT /db_xref="InterPro:IPR000120" FT /db_xref="InterPro:IPR020556" FT /db_xref="UniProtKB/TrEMBL:Q7VTT4" FT /protein_id="CAE43689.1" FT /translation="MSELAFSSLAELARGLEAGRYSAVELARHYLARIARANEALHAYV FT SVDEAGALRLAQAADARRAAGYALGPLDGLPIAIKDLCEIEGQVTTAGSAAWRERRSKV FT TGTAVRRLLAAGMVVLGKTHMVEFAFGGWGTNPVMGTPRNPWDLSHPRIPGGSSSGSGV FT AVAAGLAPAALGSDTGGSVRIPAALNGITGLKTSAGLISLHGAVPLSQTLDSIGPMTRD FT AYDAMLLVQALAGPDAADPATLGVPALVYAPPREGGRPLAGRRIAVMAEENYPLAVSAD FT VALAVRQAADTLRALGAEVATVATPFDFTRLMHANGRIIAAEAYVLHRGYIDDAALPLG FT EFVRARVQSGRAIGAADYIAAMREHAQARAQWRAWMQDYDALLTPSLPFAACRLDEVDE FT QGAPLAAFSRAGNFLGASGLALPAGFSADGLPVGVQLMGKPFDDGLLCGLGVAFQQATD FT WHLRTPDLRAAGLA" FT misc_feature complement(155334..156602) FT /note="HMMPfam hit to PF01425, Amidase" FT misc_feature complement(156117..156212) FT /note="ScanRegExp hit to PS00571, Amidases signature. FT Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(156306..156329) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(156744..157514) FT /transl_table=11 FT /locus_tag="BP3427" FT /product="putative branched-chain amino acid binding FT protein (partial)" FT /note="Partial CDS. May be disrupted by a recombination FT event. Upstream region deleted relative to B. parapertussis FT and B. bronchiseptica. Similar to the C-terminal portion of FT many larger hypothetical proteins eg. Aeropyrum pernix FT 430aa long hypothetical leu/ile/val-binding protein ape2521 FT TR:Q9Y8W3 (EMBL:AP000064) (430 aa) fasta scores: E(): FT 8.4e-06, 25.19% id in 254 aa, and to Pseudomonas aeruginosa FT probable binding protein component of ABC transporter FT pa4913 TR:Q9HUQ0 (EMBL:AE004904) (374 aa) fasta scores: FT E(): 0.00015, 26.12% id in 222 aa." FT /db_xref="UniProtKB/TrEMBL:Q7VTT3" FT /protein_id="CAE43690.1" FT /translation="MPVSAMLRAPMALAGKLGVKKAAILYSDEPFPAGLADGGRAQAAK FT NGIEVVLYEKYPKGQKDFSTLLQKAKAAGADALVPTSYEGDLISMTRQMKQLDINFPYT FT FMVYASTPQFQAIGADSNYIFSHTNYHPAINWKVNAGLTREQFAKAYDTLFPKAEFPPD FT FQTALTYGAGALTEEIIRKAGATDAAALKQASMDLSDKVTVMAGPYAIDETGKQLQMPF FT PVVQLLPGKGMVPVYPEDVAVEKAVYPAPAWNKR" FT CDS 157498..158226 FT /transl_table=11 FT /locus_tag="BP3428" FT /product="putative branched-chain amino acid transport FT permease (partial)" FT /note="Partial CDS. Disrupted by a recombination event. FT Upstream region deleted relative to B. parapertussis and B. FT bronchiseptica. Similar to many transporters eg. FT Deinococcus radiodurans branched-chain amino acid ABC FT transporter, permease protein dr2120 TR:Q9RSK4 FT (EMBL:AE002047) (310 aa) fasta scores: E(): 4.1e-14, 32.77% FT id in 238 aa, and to Salmonella typhimurium high-affinity FT branched-chain amino acid transport system permease protein FT livh livh or liva or stm3563 SW:LIVH_SALTY (P30295) (308 FT aa) fasta scores: E(): 1.2e-05, 27.42% id in 175 aa" FT /db_xref="GOA:Q7VTT2" FT /db_xref="InterPro:IPR001851" FT /db_xref="UniProtKB/TrEMBL:Q7VTT2" FT /protein_id="CAE43691.1" FT /translation="MADTGICYKVLGWPILPSLAAASVVGLLIALLFAPTLRLRGVYFG FT IVSLALATIMRLLISNLPDGFTGGSMGLILSSANNPTHSYYAMLAVMAATLATVAWLSI FT SRLGKALKAIRDDDAAAACVGIHVPRTRLKAWLLAALFPALAGGIEAWYTNVVDPEYAF FT HVLITAKSIIYAMAGGFGTIIGPVVGTLALLGIDHLIWQKFPVLNLLLGLVIVLLMLFL FT PRGIVGSLLKRYPQLRQYIA" FT misc_feature 157501..158190 FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component" FT variation 157507..157509 FT /note="large deletion in pertussis relative to FT parapertussis and bronchiseptica" FT misc_feature join(157540..157599,157618..157686,157744..157812, FT 157900..157968,158011..158079,158113..158181) FT /note="6 probable transmembrane helices predicted for FT BP3428 by TMHMM2.0 at aa 15-34, 41-63, 83-105, 135-157, FT 172-194 and 206-228" FT CDS 158237..159118 FT /transl_table=11 FT /locus_tag="BP3429" FT /product="putative branched-chain amino acid transport FT permease" FT /note="Similar to Streptococcus pneumoniae branched-chain FT amino acid ABC transporter permease protein sp0750 FT TR:Q97RP9 (EMBL:AE007382) (289 aa) fasta scores: E(): FT 1.4e-27, 33.56% id in 286 aa, and to Pseudomonas aeruginosa FT high-affinity branched-chain amino acid transport system FT permease protein BraD or pa1073 SW:BRAD_PSEAE (P21627) (307 FT aa) fasta scores: E(): 2.1e-13, 30.06% id in 296 aa" FT /db_xref="GOA:Q7VTT1" FT /db_xref="InterPro:IPR001851" FT /db_xref="UniProtKB/TrEMBL:Q7VTT1" FT /protein_id="CAE43692.1" FT /translation="MSGLIIQGLVNGLILGAIYGLIGVGLNVIFGVLRVVNFAHGEFLV FT LGAYFAYYLLEYAGIDPLLALPLAFGAFFLAGYVLYFVLIPRLSKADDPEISSLLLMFG FT VSIMLGAIMLLAFEADARSLPYEIEPVFFKIGPVLIPTVRLIALAIALAVVAVLAWFLY FT RTQLGKALRTIIMNRDAVRIVGINVERLSAVAFGLGIGLAAVTGVLVAMVFPAFSPFMG FT NDYTLIGFIVIVLGGLGHPVGALVGAMLFGVTEQVSVVFFNPSIATICGFVLMVAMIFV FT RPTGLFGHRALR" FT misc_feature join(158246..158314,158327..158395,158423..158491, FT 158528..158587,158654..158722,158813..158881, FT 158924..158992,159011..159079) FT /note="8 probable transmembrane helices predicted for FT BP3429 by TMHMM2.0 at aa 4-26, 31-53, 63-85, 98-117, FT 140-162, 193-215, 230-252 and 259-281" FT misc_feature 158249..159109 FT /note="HMMPfam hit to PF02653, Branched-chain amino acid FT transport system / permease component" FT CDS 159135..159842 FT /transl_table=11 FT /locus_tag="BP3430" FT /product="putative branched-chain amino acid transport FT ATP-binding ABC transporter" FT /note="Similar to many predicted transporters eg. Rhizobium FT meliloti putative high-affinity branched-chain amino acid FT transport ATP-binding ABC transporter protein smc02357 FT TR:CAC47163 (EMBL:AL591791) (244 aa) fasta scores: E(): FT 4.7e-23, 36.17% id in 235 aa, and to Thermotoga maritima FT ABC transporter ATP-binding protein Tm1054 TR:Q9X0E4 FT (EMBL:AE001765) (236 aa) fasta scores: E(): 1e-22, 34.61% FT id in 234 aa" FT /db_xref="GOA:Q7VTT0" FT /db_xref="HSSP:1G6H" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:Q7VTT0" FT /protein_id="CAE43693.1" FT /translation="MLKVSNLQKRFGGLVALRGVDLHVPRAAILGIIGMNGSGKTTMLN FT CINGLYVPDAGSIALDGAEIAGKQVHEVARLGVGRTFQVPRVFQHLSLLDNLDVAQQQT FT SRNADERYAQSEYWLHKVELHRLRHNHAEELSGGQQKLLELARIMVAQPKVILLDEPFA FT GVNPALAQLLIGIIRDVPTEHGCSVVLVSHDLTSIYQLSHHIIVMNEGAILCEGDADRV FT RTDPRVIEAYLGA" FT misc_feature 159213..159767 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 159234..159257 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 159537..159581 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature." FT CDS 159845..160603 FT /transl_table=11 FT /locus_tag="BP3431" FT /product="putative branched-chain amino acid transport FT ATP-binding ABC transporter" FT /note="Similar to Deinococcus radiodurans branched-chain FT amino acid ABC transporter, ATP-binding protein Dra0260 FT TR:Q9RYP9 (EMBL:AE001863) (238 aa) fasta scores: E(): FT 6.1e-27, 41.35% id in 237 aa, and to Pseudomonas aeruginosa FT high-affinity branched-chain amino acid transport FT ATP-binding protein BraG or pa1070 SW:BRAG_PSEAE (P21630) FT (233 aa) fasta scores: E(): 4e-22, 38.02% id in 213 aa" FT /db_xref="GOA:Q7VTS9" FT /db_xref="HSSP:1JI0" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VTS9" FT /protein_id="CAE43694.1" FT /translation="MPTSAATTEPVFALDHVTVAYHGDITILNGVNVQARAGQVTGIIG FT PNGAGKSTVLKTLFGFLPLRGGRIVLRGQDISRQPSHERAASGVAFVPQHRSLFGELSV FT EDNLVLGCWPFRRDKDKVRRRIDSVYQRFPILAQKRHDPVSSMSGGQQRFVEFGRALLI FT EPSVILLDEPTAMLAPKISKEIYALVRGFADEGMTVILVDQNVRRCAEISDYMYILELG FT RNKAEGAHEQFGHDGGLRDMVASWMDYKID" FT misc_feature 159956..160510 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 159977..160000 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 160813..162555 FT /transl_table=11 FT /gene="cysI" FT /locus_tag="BP3432" FT /product="putative sulfite reductase" FT /EC_number="1.8.7.1" FT /note="Similar to Pseudomonas aeruginosa sulfite reductase FT CysI TR:O31037 (EMBL:AF026066) (552 aa) fasta scores: E(): FT 1.5e-133, 64.31% id in 566 aa" FT /db_xref="GOA:Q7VTS8" FT /db_xref="InterPro:IPR005117" FT /db_xref="InterPro:IPR006067" FT /db_xref="UniProtKB/TrEMBL:Q7VTS8" FT /protein_id="CAE43695.1" FT /translation="MYVYDPVDQQLVEERVKQFSDQTRRFLDGQLTEDEFRTLRLQNGL FT YIQRHAPMLRIAIPYGMLAARQLRKLAHIARTWDRGYGHFSTRQNMQFNWPRLEDVPAI FT LAELASVQMHSIQTSGNCIRNTTSDHFAGVAPDELVNPLVWCEIIRQWSTLHPEFAFLP FT RKFKIAVSGAVEDRAAVGVHDIGLQAVERDGQLGFRFWVGGGLGRTPMVGHLINPFVPW FT QHLLTYLQAALRVYNLHGRRDNKFKARIKILVKDLTPEVYAREVEQEWQSLKDGPDTIT FT EDQLNTIAGRFVWPDYDSAAASEPDPTDARAQAYPRFARWLRTNVRAHKVAGYAAVTVS FT LKATGVPPGDITADQMDAVAGLSERYGFGELRVSHEQNLVLADVRRARLHDLWQELQQL FT NLATPNIGLLTNIIACPGGDFCALANAVSIPVAESIQRRFDDLDYLFEIGELDLNISGC FT INSCGHHHVGHIGILGVDKAGEEWYQVTLGGRQNGAAKPLPDLESPRGGGAAIGRIIGP FT SFARTQIPDVIDRLIRTYLELRDSDAERFIDVVDRVGIDPFKRDVYADPAVAKLASQQE FT PAHA" FT misc_feature 162040..162243 FT /note="HMMPfam hit to PF01077, Nitrite and sulphite FT reductase 4Fe-4S domain" FT CDS 162548..163072 FT /transl_table=11 FT /locus_tag="BP3433" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PA1837 TR:Q9I2Q8 (EMBL:AE004609) (165 aa) fasta FT scores: E(): 1.4e-15, 37.34% id in 158 aa, and to FT Caulobacter crescentus hypothetical protein CC1120 FT TR:Q9A974 (EMBL:AE005790) (168 aa) fasta scores: E(): FT 1e-09, 35.57% id in 149 aa" FT /db_xref="InterPro:IPR008318" FT /db_xref="UniProtKB/TrEMBL:Q7VTS7" FT /protein_id="CAE43696.1" FT /translation="MPEASHPDHLIRAGRLQADDARLFTPEADGPADQTPPDEPGWLVT FT LATWKAAAATLRARRHPVGVQLPPDARLDELTGPDGELDRAALSFIAIEFPVYTDGRGY FT SLAQLLRRRYGWDGELRAVGDVMIDTIHYQARVGFDSFLVKPGHDPQRALAAFRTFSVH FT YQHTYPAPLAA" FT CDS complement(163112..163906) FT /transl_table=11 FT /locus_tag="BP3434" FT /product="putative exported protein" FT /note="Similar to Pasteurella haemolytica outer membrane FT lipoprotein 3 precursor PlpC SW:PLPC_PASHA (Q08870) (263 FT aa) fasta scores: E(): 1.2e-34, 41.5% id in 265 aa, and to FT Rhizobium meliloti putative outer membrane lipoprotein FT transmembrane SMC03157 TR:CAC47467 (EMBL:AL591792) (258 aa) FT fasta scores: E(): 1.5e-39, 45.8% id in 262 aa" FT /db_xref="InterPro:IPR004478" FT /db_xref="InterPro:IPR004872" FT /db_xref="UniProtKB/TrEMBL:Q7VTS6" FT /protein_id="CAE43697.1" FT /translation="MRIRHLVAACAALFSIATAPALAQDAELKVGVTVGPHAQIGEVVK FT SVAARDGLRVTLVEFSDFIQPNAALDAGELDLNIYQHRPFLDAQNKARGYRLAPVASAV FT VQQMGVYSRRHQTLDALPQGAKVAIPNDPTNGARALLVLQAASLIELKPGVTVNASLFD FT IAANPRNLKFLEIEAAQLPHSLADVDAAAANSAYAIPAGLSPARDALALESKDAPFAVV FT VIAAREDNKNDPRIARFIKAYQSEEVKQFVARQFPGAYSTSW" FT misc_feature complement(163838..163906) FT /note="Signal peptide predicted for BP3434 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 23 and 24" FT CDS 164053..165147 FT /transl_table=11 FT /locus_tag="BP3435" FT /product="conserved hypothetical protein" FT /note="Similar to Arabidopsis thaliana hypothetical protein FT MZE19.4 TR:Q9LHE6 (EMBL:AP002050) (450 aa) fasta scores: FT E(): 1.2e-14, 31.69% id in 426 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VTS5" FT /protein_id="CAE43698.1" FT /translation="MPCAVPVMSSSADLHPHARALLADHYAAIDADLPALLELLFARSA FT GEDWHKAGTFKHHLLGVYRTLALWNQPREVRLLGLFHSVYGNEYVDLTLFDRERERATL FT RQYLGEEAEQWVHLFCAMPRTQFVQRILAGEGRGATGLVLQGADGQPLTLTPRQVAAFI FT VVSAADVGEQWHSWQDEIFAGYPHQERRDTSTHWAASLWPGPLKPPARILDMLSRLLQP FT LSTLPAGTGIPTPPAFGHCTAVLDAGDEAAAAALYWQVITRMHPMTEMDSAHHLLQAAI FT AHNPWVAEPRLLLAQLALTAQDYDTALEQAAAGLAALQAWGTSWDKRIEWSGWMAWARI FT LLQNARDRQWPATLGGLNGLGLMG" FT repeat_region 165144..165175 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 165144..166196 FT CDS 165246..166196 FT /transl_table=11 FT /locus_tag="BP3436" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTB4" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR012337" FT /db_xref="UniProtKB/TrEMBL:Q7TTB4" FT /protein_id="CAE43699.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI" FT misc_feature 165627..166160 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(166165..166196) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 166252..167064 FT /transl_table=11 FT /locus_tag="BP3437" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis CinA-related FT protein NMB2128 TR:Q9JXC2 (EMBL:AE002560) (266 aa) fasta FT scores: E(): 6.9e-42, 51.66% id in 240 aa, and to the FT N-terminal region of Streptococcus pneumoniae putative FT competence-damage protein CinA SW:CINA_STRPN (P54184) (418 FT aa) fasta scores: E(): 0.1, 24.51% id in 257 aa" FT /db_xref="GOA:Q7VTS4" FT /db_xref="InterPro:IPR001453" FT /db_xref="UniProtKB/TrEMBL:Q7VTS4" FT /protein_id="CAE43700.1" FT /translation="MAAESARRIGLIIVGDEILSGRRQDKHFSKVVELLGARGLKLSWA FT ELLPDDRATLAAVLRRSFASGDIVFSCGGIGGTPDDHTRQAAAEALDLPLALHPEAEQA FT IALRAAEMAAKGQGTADMGTPENQQRLQIGMFPRGCEIVPNPYNRIPGFFVRDHTFVPG FT FPVMAWPMLEWTLDTRYRALHHQVRHAEHSFLVFDMPESRITPAMLEIEQRWPGVRAFS FT LPSVGETGGPSHIDLGVKGEPEAAAQALAFLRAEVVRLGGKLAPPAQN" FT CDS 167223..168071 FT /transl_table=11 FT /locus_tag="BP3438" FT /product="IclR family transcriptional regulator" FT /note="Similar to Escherichia coli acetate operon repressor FT IclR SW:ICLR_ECOLI (P16528) (274 aa) fasta scores: E(): FT 1e-19, 30.76% id in 273 aa, and to Streptomyces coelicolor FT putative transcriptional regulator SCAH10.11c TR:Q9RKU6 FT (EMBL:AL132824) (270 aa) fasta scores: E(): 4.8e-22, 37.4% FT id in 270 aa" FT /db_xref="GOA:Q7VTS3" FT /db_xref="InterPro:IPR005471" FT /db_xref="InterPro:IPR014757" FT /db_xref="UniProtKB/TrEMBL:Q7VTS3" FT /protein_id="CAE43701.1" FT /translation="MSRIPNATARGPGSHSDDGAGQHPIAIQVIDRAMRLLDALAAQPE FT PVTLKELSATTGLHASTAHRILNDLVVGRYVERVDNGLYQLGMRLLELGSLVKGRLNVR FT EAAIGAMRSLHKQTGQTINLSVQQGDEIVYIDRAWSERSGMQVVRAIGGRAPLHLTSTG FT KLFLSTYDTRLVRAYALRTGLAGHTRNSLTELDRLERELALVRRHGYARDNEELELGVR FT CIAAGIYDDTGKLVAGLSISAPAERLQDEWIRLLVDAAASISEALGYEPGVNGIHAPAA FT A" FT misc_feature 167472..168020 FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator" FT misc_feature 167847..167912 FT /note="ScanRegExp hit to PS01051, Bacterial regulatory FT proteins, iclR family signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 168272..172666 FT /transl_table=11 FT /gene="dnt" FT /locus_tag="BP3439" FT /product="dermonecrotic toxin" FT /note="Previously sequenced as Bordetella pertussis FT dermonecrotic toxin Dnt TR:Q45336 (EMBL:U10527) (1451 aa) FT fasta scores: E(): 0, 100% id in 1451 aa. Almost identical FT to Bordetella bronchiseptica dermonecrotizing toxin FT TR:Q9S5D5 (EMBL:AB020025) (1464 aa) fasta scores: E(): 0, FT 98.97% id in 1464 aa" FT /db_xref="InterPro:IPR008430" FT /db_xref="InterPro:IPR011324" FT /db_xref="UniProtKB/TrEMBL:Q7VTS2" FT /protein_id="CAE43702.1" FT /translation="MDKDESALRQLVDMALVGYDGVVEELLALPSEESGDLAGGRAKRE FT KAEFALFSEAPNGDEPIGQDARTWFYFPKYRPVAVSNLKKMQVAIRARLEPESLILQWL FT IALDVYLGVLIAALSRTVISDLVFEYVKARYEIYYLLNRVPHPLATAYLKRRRQRPVDR FT SGRLGSVFEHPLWFAYDELAGTVDLDADIYEQALAESIERRMDGEPDDGSLDTAEHDVW FT RLCRDGINRGEQAIFQASGPYGVVADAGYMRTVADLAYADALADCLHAQLRIRAQGSVD FT SPGDEMPRKLDAWEIAKFHLAATQQARVDLLEAAFALDYAALRDVRVYGDYRNALALRF FT IKREALRLLGARRGNASTMPAVAAGEYDEIVASGAANDAAYVSMAAALIAGVLCDLESA FT QRTLPVVLARFRPLGVLARFRRLEQETAGMLLGDQEPEPRGFISFTDFRDSDAFASYAE FT YAAQFNDYIDQYSILEAQRLARILALGSRMTVDQWCLPLQKVRHYKVLTSQPGLIARGI FT ENHNRGIEYCLGRPPLTDLPGLFTMFQLHDSSWLLVSNINGELWSDVLANAEVMQNPTL FT AALAEPQGRFRTGRRTGGWFLGGPATEGPSLRDNYLLKLRQSNPGLDVKKCWYFGYRQE FT YRLPAGALGVPLFAVSVALRHSLDDLAAHAKSALYKPSEWQKFAFWIVPFYREIFFSTQ FT DRSYRVDVGSIVFDSISLLASVFSIGGKLGSFTRTQYGNLRNFVVRQRIAGLSGQRLWR FT SVLKELPALIGASGLRLSRSLLVDLYEIFEPVPIRRLVAGFVSATTVGGRNQAFLRQAF FT SAASSSAGRTGGQLASEWRMAGVDATGLVESTSGGRFEGIYTRGLGPLSECTEHFIVES FT GNAYRVIWDAYTHGWRVVNGRLPPRLTYTVPVRLNGQGHWETHLDVPGRGGAPEIFGRI FT RTRNLVALAAEQAAPMRRLLNQARRVALRHIDTCRSRLALPRAESDMDAAIRIFFGEPD FT AGLRQRIGRRLQEVRAYIGDLSPVNDVLYRAGYDLDDVATLFNAVDRNTSLGRQARMEL FT YLDAIVDLHARLGYENARFVDLMAFHLLSLGHAATASEVVEAVSPRLLGNVFDISNVAQ FT LERGIGNPASTGLFVMLGAYSESSPAIFQSFVNDIFPAWRQASGGGPLVWNFGPAAISP FT TRLDYANTDIGLLNHGDISPLRARPPLGGRRDIDLPPGLDISFVRYDRPVRMSAPRALD FT ASVFRPVDGPVHGYIQSWTGAEIEYAYGAPAAAREVMLTDNVRIISIENGDEGAIGVRV FT RLDTVPVATPLILTGGSLSGCTTMVGVKEGYLAFYHTGKSTELGDWATAREGVQALYQA FT HLAMGYAPISIPAPMRNDDLVSIAATYDRAVIAYLGKDVPGGGSTRITRHDEGAGSVVS FT FDYNAAVQASAVPRLGQVYVLISNDGQGARAVLLAEDLAWAGSGSALDVLNERLVTLFP FT APV" FT misc_feature 172220..172243 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(172760..173737) FT /transl_table=11 FT /locus_tag="BP3440" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT SMB20025 TR:CAC48428 (EMBL:AL603642) (325 aa) fasta scores: FT E(): 9.8e-62, 54.4% id in 318 aa, and to Agrobacterium FT tumefaciens hypothetical protein AGR_C_180p TR:AAK85936 FT (EMBL:AE007953) (337 aa) fasta scores: E(): 1.6e-58, 52.58% FT id in 310 aa" FT /db_xref="GOA:Q7VTS1" FT /db_xref="InterPro:IPR005064" FT /db_xref="PDB:2F5X" FT /db_xref="UniProtKB/TrEMBL:Q7VTS1" FT /protein_id="CAE43703.1" FT /translation="MPPISRKLSALFAAVALTGADTALAEYPERPVNMVVPFAAGGPTD FT NVARSLAESMRPTLGETVVVENKGGAGGTIGTTQVARAQPDGYSILLMHAGFSTAPSLY FT KNPGYEPYTSFEPIGLVVDVPMTIIARGDFPPNNIKELAEYVKKNADKISLANAGIGAA FT SHLCGTMLVEALGVNLLTIPYKGTAPAMNDLLGKQVDLMCDQTTNTTQQITSGKVKAYA FT VTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADPKF FT QERMKQLGAEVLTNEANPEALQAKVKQQVPQWAELFKKAGVEKQ" FT misc_feature complement(173669..173737) FT /note="Signal peptide predicted for BP3440 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.459 between residues 23 and 24" FT CDS 174124..174702 FT /transl_table=11 FT /locus_tag="BP3441" FT /product="conserved hypothetical protein" FT /note="Similar to Alcaligenes eutrophus granule-associated FT protein PhaP TR:Q44013 (EMBL:X85729) (192 aa) fasta scores: FT E(): 5.6e-23, 44.79% id in 192 aa. Weakly similar to an FT internal region of Escherichia coli membrane protein FT involved in colicin uptake TolA SW:TOLA_ECOLI (P19934) (421 FT aa) fasta scores: E(): 1.4, 27.02% id in 185 aa" FT /db_xref="InterPro:IPR010127" FT /db_xref="InterPro:IPR018968" FT /db_xref="UniProtKB/TrEMBL:Q7VTS0" FT /protein_id="CAE43704.1" FT /translation="MSAIPQQVLARQKATVNSLVAAQSAMFAGFEKLVDLNLKVVRATL FT DEVAQQSQQAAELKDPQDVASFTSGLVQPGAEKALAYGKHVYDIVAGVQAELAQLAEAQ FT IAEGQQQLTEAVEQFSKNAPTGSESAVALIKSSLATANSAYDSLTKAAKQAAEVAESNL FT NAAANASFKAASDAAEVATKAAGRNRRAA" FT CDS complement(174850..175899) FT /transl_table=11 FT /gene="pyrD" FT /locus_tag="BP3442" FT /product="dihydroorotate dehydrogenase" FT /EC_number="1.3.3.1" FT /note="Similar to Escherichia coli dihydroorotate FT dehydrogenase PyrD SW:PYRD_ECOLI (P05021) (336 aa) fasta FT scores: E(): 4.3e-59, 50.59% id in 334 aa, and to Neisseria FT meningitidis dihydroorotate dehydrogenase NMA0042 TR:Q9JX66 FT (EMBL:AL162752) (335 aa) fasta scores: E(): 1e-66, 57.22% FT id in 339 aa" FT /db_xref="GOA:Q7VTR9" FT /db_xref="InterPro:IPR001295" FT /db_xref="InterPro:IPR005719" FT /db_xref="InterPro:IPR012135" FT /db_xref="InterPro:IPR013785" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTR9" FT /protein_id="CAE43705.1" FT /translation="MSILFHAYPLARPALFAMDAETAHEVTLAQLQRAYDCGLTRKLLH FT AQPEAPATLMGLSLRNPVGLAAGLDKNGAHIDALGNLGFGFVEVGTVTPRAQPGNPKPR FT MFRLPRANALINRLGFNNQGLDAFIANVQRSQWRSQGRILGLNIGKNADTPIERAAEDY FT LIGLAGVYPHADYVTVNISSPNTKNLRALQGGDELSALLGQLQERRLALADQHQRHVPL FT AVKIAPDLSDDQIDAIAEILPRHGIDGVIATNTTLARDAVQGLPHAEEAGGVSGAPVHE FT LSLRVIERLRSRLGDAVAIIGVGGILSGRQASEKMAAGAQAVQLYTGLIYRGPALVGEC FT VRALAQGSR" FT misc_feature complement(174886..175749) FT /note="HMMPfam hit to PF01180, Dihydroorotate FT dehydrogenase" FT misc_feature complement(174940..175002) FT /note="ScanRegExp hit to PS00912, Dihydroorotate FT dehydrogenase signature 2. Confirmed by InterPro eMOTIF FT pattern match." FT misc_feature complement(175588..175647) FT /note="ScanRegExp hit to PS00911, Dihydroorotate FT dehydrogenase signature 1. Confirmed by InterPro eMOTIF FT pattern match." FT CDS complement(175940..176674) FT /transl_table=11 FT /locus_tag="BP3443" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PA2618 TR:Q9I0M0 (EMBL:AE004690) (235 aa) fasta FT scores: E(): 2.8e-39, 45.85% id in 229 aa. C-terminal FT region is similar to an internal region of Arabidopsis FT thaliana arginine-tRNA-protein transferase 1 ATE1 FT SW:ATE1_ARATH (Q9ZT48) (632 aa) fasta scores: E(): 2.4e-06, FT 34.54% id in 165 aa" FT /db_xref="GOA:Q7VTR8" FT /db_xref="InterPro:IPR007471" FT /db_xref="InterPro:IPR007472" FT /db_xref="InterPro:IPR017138" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTR8" FT /protein_id="CAE43706.1" FT /translation="MPDMSQLKELPFSTLQFYATAPYPCSYLPGRQARSQVAAPGHLIN FT AGTYSQLVEQGFRRSGLFTYRPHCDNCHACVPVRVDAARFEPNRTQRRAWRSHQALRAF FT VAELAWSPEHYDLYTRYQQGRHPGGGMDEDSRTQYAQFLLTTRVNTRLVEFRAPQGQLA FT MISIIDVLDDGLSSVYTFYDPDMAGSLGTYSILWQIEQCRTLDLPWLYLGYWIADSRKM FT AYKANFRPLQMHVDGAWRETPP" FT misc_feature complement(176453..176470) FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT CDS complement(join(176702..176821,176820..177464)) FT /pseudo FT /transl_table=11 FT /gene="aat" FT /locus_tag="BP3444" FT /product="putative leucyl/phenylalanyl-tRNA--protein FT transferase (Pseudogene)" FT /EC_number="2.3.2.-" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 216. The frameshift occurs within FT a polymeric tract of (GC)4. The sequence has been checked FT and believed to be correct. Similar to Escherichia coli FT leucyl/phenylalanyl-tRNA--protein transferase Aat FT SW:LPTP_ECOLI (P23885) (234 aa) fasta scores: E(): 7.4e-12, FT 45% id in 220 aa, and to Xylella fastidiosa protein FT transferase XF1446 TR:Q9PDD3 (EMBL:AE003974) (243 aa) fasta FT scores: E(): 7e-39, 47.23% id in 235 aa. Contains a FT frameshift after codon 215" FT /db_xref="PSEUDO:CAE43707.1" FT variation complement(176819..176826) FT /note="(GC)4 in pertussis; (GC)5 in parapertussis and FT bronchiseptica" FT CDS complement(177469..178050) FT /transl_table=11 FT /locus_tag="BP3445" FT /product="putative NUDIX hydrolase" FT /note="Similar to the C-terminal region of Escherichia coli FT NADH pyrophosphatase NudC SW:NUDC_ECOLI (P32664) (257 aa) FT fasta scores: E(): 0.0015, 26.81% id in 179 aa, and to the FT full length Pseudomonas aeruginosa hypothetical protein FT PA3755 TR:Q9HXP0 (EMBL:AE004794) (184 aa) fasta scores: FT E(): 1.1e-37, 55.49% id in 173 aa" FT /db_xref="GOA:Q7VTR7" FT /db_xref="InterPro:IPR000086" FT /db_xref="InterPro:IPR015797" FT /db_xref="InterPro:IPR020084" FT /db_xref="UniProtKB/TrEMBL:Q7VTR7" FT /protein_id="CAE43708.1" FT /translation="MSAQQSLQYFPAPRRARFCSQCGSPVDHRVPEGDNRARDICDRCG FT AIHYQNPRMVVGTVPVWENRILLCRRAIEPRYDTWTLPAGFMELGESAAQGAERETLEE FT SGARIRLGQLYTVIDVPQVEQVHFFYLAEALGPGLDPGPESLEARYFDEAEIPWDDLSF FT RTVVTTLRRYLEDRRKGEFPTHHYSLESHR" FT misc_feature complement(177532..177897) FT /note="HMMPfam hit to PF00293, MutT-like domain" FT misc_feature complement(177733..177798) FT /note="ScanRegExp hit to PS00893, Nudix hydrolase FT signature." FT CDS complement(178047..178958) FT /transl_table=11 FT /locus_tag="BP3446" FT /product="LysR family transcriptional regulator" FT /note="Similar to Vibrio cholerae LysR family FT transcriptional regulator VCA0982 TR:Q9KKW8 (EMBL:AE004424) FT (299 aa) fasta scores: E(): 2.6e-40, 42.25% id in 284 aa, FT and to Rhizobium loti transcriptional regulator MLL2784 FT TR:Q98HN8 (EMBL:AP003000) (307 aa) fasta scores: E(): FT 3e-41, 41.41% id in 297 aa" FT /db_xref="GOA:Q7VTR6" FT /db_xref="InterPro:IPR000847" FT /db_xref="InterPro:IPR005119" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VTR6" FT /protein_id="CAE43709.1" FT /translation="MDTHTAMQTFARVVELGSFAAAADKTDQARSVVTRQVAFLERKYG FT VRLLNRTTRKLSLTDAGRAFYDRIRPVLAELAELDLALQAQGSQPAGRLRISAPVSFGV FT LHLGPAIADYLLRYPEVVIDLDLNDRVVDLVEEGYDVAVRIGPLVDSSLVARPLAPQQL FT VACAAPAYLERYGAPAQPEDLRRHRCLHYAYASTGNDWHFEKDGQTHVVRVNATFRANN FT GDVLRTAALAGHGIILQPEFLVGEDLRAGRLTALLTDYRHSLITMMAVYPHRRFLSPKV FT RSFVEHLEKRFGGARQPLESRS" FT misc_feature complement(178530..178949) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(178815..178907) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS 179074..179475 FT /transl_table=11 FT /locus_tag="BP3447" FT /product="putative membrane protein" FT /note="Similar to Bacillus halodurans hypothetical protein FT YfiD TR:Q9RC47 (EMBL:AB024562) (129 aa) fasta scores: E(): FT 6.6e-06, 36.44% id in 118 aa, and to Bacillus subtilis FT hypothetical protein YdfP TR:P96694 (EMBL:AB001488) (129 FT aa) fasta scores: E(): 4.2e-07, 35.48% id in 124 aa" FT /db_xref="InterPro:IPR011637" FT /db_xref="UniProtKB/TrEMBL:Q7VTR5" FT /protein_id="CAE43710.1" FT /translation="MIDSRTAPYAVLLLRLALGVMYLAHGLTKLLVFTLPGTAQFFAKV FT GFAGWLAYPVTYFEIVGGVLLILGIYPRWVAAIAAVQLLAAATVHAGNGWAFGNPGGGW FT EYPVFLAVGAAALALLGNGKAALLPRPRA" FT misc_feature join(179110..179178,179206..179274,179293..179361, FT 179389..179457) FT /note="4 probable transmembrane helices predicted for FT BP3447 by TMHMM2.0 at aa 13-35, 45-67, 74-96 and 106-128" FT CDS complement(179493..180095) FT /transl_table=11 FT /locus_tag="BP3448" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein Rsc0562 or Rs04903 SWALL:Q8Y1X5 (EMBL:AL646060) FT (195 aa) fasta scores: E(): 2.6e-19, 37.68% id in 207 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VTR4" FT /protein_id="CAE43711.1" FT /translation="MDQLVKDALARWPDVPAVYGWLSLDARGRWHLHPQGDAARGAPGE FT SITSPQILAFIGRNYECDAQGNWFFQNGPQRVYVRLDAAPLILRRADEFSGLQTHTGQA FT VTAVRQWWLDDEGRLYASTAAGPGLVEDRELAPLLAQLHVDGQALADVLETGWPEPGRP FT PLMVSHPAWPNAAPLHGVASGDVARRLGFVANPAKPA" FT CDS complement(180153..180536) FT /transl_table=11 FT /locus_tag="BP3449" FT /product="putative membrane protein" FT /note="Poor database matches. C-terminus is similar to FT similar to Rhizobium meliloti putative signal peptide FT protein SMC00809 TR:Q92RU0 (EMBL:AL591784) (88 aa) fasta FT scores: E(): 0.0094, 40.26% id in 77 aa. Possible FT alternative translational start site" FT /db_xref="UniProtKB/TrEMBL:Q7VTR3" FT /protein_id="CAE43712.1" FT /translation="MLTCGRRNYVRTPMPTLHFPRPSARHGARLLLALVALTLACAPMM FT ARADDDDDDDDYRPRREYKEKYWDGACKVERKWKRNGEYREKRKCPGYRSGYDYGYAQP FT AMVPMIPANPAIIISAPPIVIRP" FT tRNA complement(180649..180722) FT /note="tRNA Cys anticodon GCA, Cove score 68.57" FT tRNA complement(180783..180858) FT /note="tRNA Gly anticodon GCC, Cove score 88.26" FT CDS complement(180981..181235) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3450" FT /product="C-terminal region of a putative membrane protein FT (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. This CDS is the C-terminal region of FT BP3104. Similar to C-terminal regions of Escherichia coli FT homoserine/homoserine lactone efflux protein RhtB FT SW:RHTB_ECOLI (P27847) (206 aa) fasta scores: E(): 0.00063, FT 28.39% id in 81 aa, and Rhizobium meliloti putative amino FT acid efflux transmembrane protein SMC02981 TR:Q92LY9 FT (EMBL:AL591792) (211 aa) fasta scores: E(): 1.8e-10, 45.67% FT id in 81 aa. CDS is truncated by the insertion of the FT upstream IS element and subsequent recombination events." FT CDS complement(181235..182185) FT /transl_table=11 FT /locus_tag="BP3451" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR012337" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE43714.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 181235..181266 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(181235..182287) FT misc_feature complement(181271..181804) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(182256..182287) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(182334..183044) FT /transl_table=11 FT /locus_tag="BP3452" FT /product="GntR family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator PA0797 TR:Q9I5E1 (EMBL:AE004515) FT (240 aa) fasta scores: E(): 5.1e-09, 27.42% id in 237 aa, FT and to Streptomyces seoulensis putative transcriptonal FT regulator PdhR TR:Q9JP85 (EMBL:AF047034) (207 aa) fasta FT scores: E(): 2.6e-08, 31.73% id in 208 aa" FT /db_xref="GOA:Q7VTR2" FT /db_xref="InterPro:IPR000524" FT /db_xref="InterPro:IPR011711" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VTR2" FT /protein_id="CAE43715.1" FT /translation="MTRQPQSADIEELPLGRTSKSLPEQVADRLMQSIQTGVLQPGERL FT KEETLSDRFAVSRTTVREAISTLERRGVIERVPRFGARVREIRADEIEEIFCIRAQLLG FT LAARRVAEHGDDEILEQLRQQVERLRQLADKPSTSPASYAKVSIETQQLLIQAVGWKQL FT GTMYEGLSNQMLWKTSVRGKSLSFQSQQRRRESVGDWQRLLEAVCTRDAAAAEESAKLL FT LGASYRAVRGQLAS" FT misc_feature complement(182793..182969) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT misc_feature complement(182841..182915) FT /note="ScanRegExp hit to PS00043, Bacterial regulatory FT proteins, gntR family signature." FT CDS complement(183116..184777) FT /transl_table=11 FT /locus_tag="BP3453" FT /product="putative acetolactate synthase large subunit" FT /EC_number="2.2.1.6" FT /note="Similar to Escherichia coli acetolactate synthase FT isozyme II large subunit IlvG SW:ILVG_ECOLI (P00892) (548 FT aa) fasta scores: E(): 3e-50, 31.28% id in 537 aa, and to FT Pseudomonas aeruginosa probable decarboxylase PA2035 FT TR:Q9I280 (EMBL:AE004629) (552 aa) fasta scores: E(): FT 4.7e-121, 59.13% id in 553 aa" FT /db_xref="GOA:Q7VTR1" FT /db_xref="HSSP:1OZH" FT /db_xref="InterPro:IPR000399" FT /db_xref="InterPro:IPR011766" FT /db_xref="InterPro:IPR012000" FT /db_xref="InterPro:IPR012001" FT /db_xref="UniProtKB/TrEMBL:Q7VTR1" FT /protein_id="CAE43716.1" FT /translation="MNPTLAARTGGRILVDALKVHGVDQAFCVPGESYLPVLDALRDDA FT QDIRLTVCRQEGGAAFMAEAYGKLTGKPGICFVTRGPGATNASIGVHTAFQDSTPMILF FT VGQVGADVAEREAFQEIDYRRMYGQMAKWVASIDDAQRIPEFVHRAHQVALSGRPGPVV FT LALPEDVLRATAHAADRVPHRIARACATSADMKRLHELLAAARRPLLIVGGGGWNEAAS FT AAITRYAERAGLPVATAFRRQDRFDNRHPCYAGHIGLGIAPSLARHVRQADLLLVVGAR FT LADATTDSYALITPEHPGQTLIHVHPDPQELGRVYPADLPIAADVQAFAAQLDACDNPP FT ARCDAWLRELADDYRTDLAVAPSRRDTDLAQVMHWLNQHLPQNAIVTNGAGNYAGWVHR FT YFQYSPQRRQLAPTNGAMGYGVPAAIAAKLAAPARTVVCFAGDGCFMMNGQELATAIQH FT DAAVVFIVVNNGMFGTIRMHQEMHYPGRVSGTSLRNPDFVALASAYGAHAERVAHHDDF FT PAAFERACASGRAALIEIRTDPAAISARRDLPTLAA" FT misc_feature complement(183173..184726) FT /note="HMMPfam hit to PF00205, Thiamine pyrophosphate FT enzyme, central domain" FT misc_feature complement(183446..183505) FT /note="ScanRegExp hit to PS00187, Thiamine pyrophosphate FT enzymes signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS complement(184852..185817) FT /transl_table=11 FT /locus_tag="BP3454" FT /product="putative lipoprotein" FT /note="Similar to Comamonas testosteroni hypothetical FT protein OrfJ TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta FT scores: E(): 2.4e-43, 44.41% id in 322 aa, and to Rhizobium FT meliloti hypothetical protein SMA1927 TR:AAK65716 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 7.9e-44, 40.68% FT id in 322 aa" FT /db_xref="GOA:Q7VTR0" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VTR0" FT /protein_id="CAE43717.1" FT /translation="MQRIFEKAALALALVAMPLWAGVACAQQPLRMMVGFPPGGTTDVI FT ARLVAQRLGGELSRSVVVENRAGASGNLAAATVAKADPDGNTLLFAPSSHATNASLYTN FT QSFDTVKSFRAVGMVAVTPYVLVVNPGMQATNLRDFVDYLKRNPGKVEFASASPGTGQH FT LAAELFKDEAGVDIMHVPYKGSAAALPDLIAGRVPMMFDNIAVMLPHIQQGTVRPLAIT FT SKTRSRFLPDTPTMAESGYPDFEVLGWFTLLAPAKTPDATVQAYNDALKKISADPDFVA FT QLAKLGGEAVARTPAQADAYIAEEVDKWGKVIRTAHINLN" FT misc_feature complement(185740..185817) FT /note="Signal peptide predicted for BP3454 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.798 between residues 26 and 27" FT misc_feature complement(185743..185775) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(185872..186780) FT /transl_table=11 FT /locus_tag="BP3455" FT /product="putative taurine dioxygenase" FT /note="Similar to Escherichia coli FT alpha-ketoglutarate-dependent taurine dioxygenase TauD FT SW:TAUD_ECOLI (P37610) (282 aa) fasta scores: E(): 5.4e-31, FT 35.08% id in 285 aa, and to Pseudomonas aeruginosa taurine FT dioxygenase PA3935 TR:Q9HX81 (EMBL:AE004811) (277 aa) fasta FT scores: E(): 3.8e-35, 40.98% id in 283 aa" FT /db_xref="GOA:Q7VTQ9" FT /db_xref="HSSP:1GY9" FT /db_xref="InterPro:IPR003819" FT /db_xref="UniProtKB/TrEMBL:Q7VTQ9" FT /protein_id="CAE43718.1" FT /translation="MSDITVRPLGYAAGAAVSGIDLRQALQPEQLARLRAAWHEHLVLV FT FPGQDLNAPQLIDFTRHFGDVERNDSVPYYRDPDYPEVLLVTNKPRDGKPSQTRNTGRN FT WHSDLSYTDRPAKGSVLMCKEKPPVGGDTMFANMYQAYESLSAPFKRFVDGLHAVHDIS FT LIKGFDRRDPEQTAALKRRNPPIAHPVVRIHPETGRKCLFVSDRVRTFVGMTEEESRPI FT LDFLNRHATSPEFVYRHRWSVNDIVMWDNRCTLHIALPDFDQSKPRHMMRCSMLGEPSG FT YVIEDAPLDEQAARSAIAAVS" FT misc_feature complement(185926..186771) FT /note="HMMPfam hit to PF02668, Taurine catabolism FT dioxygenase TauD, TfdA family" FT CDS complement(187086..189374) FT /transl_table=11 FT /gene="maeB" FT /locus_tag="BP3456" FT /product="NADP-dependent malic enzyme" FT /EC_number="1.1.1.40" FT /note="Similar to Escherichia coli NADP-dependent malic FT enzyme MaeB SW:MAO2_ECOLI (P76558) (759 aa) fasta scores: FT E(): 1.6e-175, 60.07% id in 759 aa, and to Rhizobium FT meliloti NAD-dependent malic enzyme Dme SW:MAO1_RHIME FT (O30807) (770 aa) fasta scores: E(): 3.4e-169, 58.49% id in FT 759 aa" FT /db_xref="GOA:Q7VTQ8" FT /db_xref="InterPro:IPR002505" FT /db_xref="InterPro:IPR012188" FT /db_xref="InterPro:IPR012301" FT /db_xref="InterPro:IPR012302" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VTQ8" FT /protein_id="CAE43719.1" FT /translation="MKDTDRQAALDYHAYPHPGKISVTATKPLVTQRDLSLAYSPGVAA FT ACEEIVDDPVNVFRYTGRGNLVGVITNGTAVLGLGNIGALASKPVMEGKAVLFKKFAGL FT DVFDIEINETDPDKLVEIIAGLEATFGGINLEDIKAPECFTVERKLRERMKIPVFHDDQ FT HGTAITVCAAVVNGLAVAGKRIEDVKLVTSGAGAAALACLDLLVDLGLPLEHIWVTDIE FT GVVYEGRKKLMDADKERFARKTKARTLAEVIEGADVFLGLSAGNVLKPEMVATMAANPL FT ILALANPNPEILPEAAHAVRDDIVMATGRSDYPNQVNNVLCFPYIFRGALDVGATTITR FT EMEKAAVLAIASLAREEQNEVVAAAYGTYDISFGRDYLIPKPFDPRLIVRIAPAVAKAA FT MEGGVATRPIADLDAYAEQLQQFVYHSGAFMKPLFSQAKQIVRDGGRARIVFTEGEDER FT VLRAVQVIVDEKVAKPILVGRPQVLLSRIEKFGLRLRLGQDVEVCNPEYDERFHQYWTT FT YWDMMCRNGITKEMARVEMRRRLTLIGAMMVHLGDADGMICGAVSGFHDHLRFIDQVIG FT RKPGAQTYAAMNILLLNERTVALVDTHVNEDPSAEQIAEYTVAAAEEMQRLGLAPKVAL FT LSRSNFGSGSSASGAKMRHALELVNRQAPGLEIDGEMHGDCALDESLRLRLLPDSPLKG FT SANLLVCPNVDSGNIAYNLLKTVAGKNVAVGPILLGANAPVHIVTSSATVRRIINMAAL FT CVLDANRPQ" FT misc_feature complement(187110..188093) FT /note="HMMPfam hit to PF01515, Phosphate acetyl/butaryl FT transferase" FT CDS 189516..190487 FT /transl_table=11 FT /locus_tag="BP3457" FT /product="LysR family regulatory protein" FT /note="Similar to Agrobacterium tumefaciens pca operon FT transcriptional activator PcaQ SW:PCAQ_AGRTU (P52668) (311 FT aa) fasta scores: E(): 4.6e-15, 28.8% id in 302 aa, and to FT Pseudomonas aeruginosa probable transcriptional regulator FT PA2206 TR:Q9I1R1 (EMBL:AE004647) (315 aa) fasta scores: FT E(): 2.4e-23, 30.36% id in 303 aa" FT /db_xref="GOA:Q7VTQ7" FT /db_xref="InterPro:IPR000847" FT /db_xref="InterPro:IPR005119" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VTQ7" FT /protein_id="CAE43720.1" FT /translation="MTGSPSVDAAEIVRRLTSRLKMRHLQLLLHVRQLGSLTRVAQQLS FT TSQPAVTNALAELEDMFGAPLFQRTARGMTPTPLGLVVLARAEAIIHDLRHLVDDMGAS FT ASGYTARLHLGVTPFVSSRLIAAAIGRAQRADHRLAASVHDGISGKLLAGLRDHSLDVV FT VARAGPALDVEGIVFEPLYVQQPRLIASRRLAARLARRALDWSALAELDWILGVPQTAM FT RDQVASLFMQAGIRPPAATTECHSAKLIGELIAASDRALSIVPADIADELVSVAGVAIV FT PFSFTWHLPPIAVFMRHESQGSAPHRLFAEALREECRHARAG" FT misc_feature 189579..190007 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 189621..189713 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS 190739..191680 FT /transl_table=11 FT /locus_tag="BP3458" FT /product="binding-protein-dependent transport systems inner FT membrane component" FT /note="Similar to Bacillus subtilis oligopeptide transport FT system permease protein AppB SW:APPB_BACSU (P42062) (317 FT aa) fasta scores: E(): 6.4e-39, 37.22% id in 317 aa, and to FT Rhizobium sp probable peptide ABC transporter permease FT protein Y4TP SW:Y4TP_RHISN (Q53191) (313 aa) fasta scores: FT E(): 1.7e-58, 51.43% id in 313 aa" FT /db_xref="GOA:Q7VTQ6" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7VTQ6" FT /protein_id="CAE43721.1" FT /translation="MLSYTLRRLLMTLPVMLFVALFVFGLLDLAPGDPAALLAGEDATP FT QDIARIRATLGLDQPFLQRFAEWGWNVLHGDLGTSLFTGLPVSHMIGQRLVPTFSLMLM FT TLLVSVVIAIPIGALAAWKHNRLQDRGIMVLAVFSFSVPSFAVGYLLAWIFGLQLRWFP FT VQGYVPLATGFWASVHTLVLPALALGSVYVALITRITRATLLETLSQDYIRTARAKGVG FT NRGLLFRHALKNAAVPIITVIGSGVALLISGTVVTETVFSIPGLGRLVVDAILWRDYPV FT IQGVILLFSFMYVLVNLLVDLLYRAFDPRIKY" FT misc_feature join(190763..190831,191033..191101,191138..191206, FT 191249..191317,191453..191521,191579..191647) FT /note="6 probable transmembrane helices predicted for FT BP3458 by TMHMM2.0 at aa 9-31, 99-121, 134-156, 171-193, FT 239-261 and 281-303" FT misc_feature 191348..191563 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature 191351..191437 FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign. Confirmed by FT InterPro eMOTIF pattern match." FT CDS 191680..192513 FT /transl_table=11 FT /locus_tag="BP3459" FT /product="binding-protein-dependent transport systems inner FT membrane component" FT /note="Similar to Escherichia coli dipeptide transport FT system permease protein DppC SW:DPPC_ECOLI (P37315) (300 FT aa) fasta scores: E(): 5.6e-34, 38.04% id in 276 aa, and to FT Rhizobium loti ABC transporter permease protein MLR6290 FT TR:Q989T2 (EMBL:AP003008) (280 aa) fasta scores: E(): FT 6.8e-51, 52.06% id in 267 aa" FT /db_xref="GOA:Q7VTQ5" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7VTQ5" FT /protein_id="CAE43722.1" FT /translation="MSNIAGFLKRHPTTAVGGGLLLLLFLMAVCAPWLGTVDPTALSPI FT HRTRAPSEQFWFGTDLLGRDVYSRVIYGARVSLIVGFTVAALSTVIGVVIGLAAGFVRW FT VDAVVMRIMDGFMSIPTILLAIALIALTRASLQNVIIAITIAEVPRVVRLVRGLVLSLR FT EQPYVEAAVAAGASRLRIVARHIFPNTLAALMVQATYICGVAILAEASLSFIGAGVPPS FT VPSWGNIMAEGRALWQIKPHLIAFPAVFLSITILAINMLGDGLRDAVDPRMAKRI" FT misc_feature join(191722..191790,191908..191976,192004..192072, FT 192235..192303,192406..192474) FT /note="5 probable transmembrane helices predicted for FT BP3459 by TMHMM2.0 at aa 15-37, 77-99, 109-131, 186-208 and FT 243-265" FT misc_feature 192154..192384 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature 192157..192243 FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign." FT CDS 192517..194367 FT /transl_table=11 FT /locus_tag="BP3460" FT /product="ABC transporter ATP-binding protein" FT /note="Similar to Escherichia coli hypothetical ABC FT transporter ATP-binding protein YliA SW:YLIA_ECOLI (P75796) FT (629 aa) fasta scores: E(): 9.7e-133, 62.29% id in 602 aa. FT C-terminal region is similar to Bacillus subtilis FT oligopeptide transport ATP-binding protein AppF FT SW:APPF_BACSU (P42065) (329 aa) fasta scores: E(): 1.5e-47, FT 47.07% id in 325 aa" FT /db_xref="GOA:Q7VTQ4" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR010066" FT /db_xref="InterPro:IPR013563" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:Q7VTQ4" FT /protein_id="CAE43723.1" FT /translation="MTTTTTQSRRVLELENLSIAFGRGVHTFHAVKSLSLHVDRGETLA FT IVGESGSGKSVTSLAVMRLVEFGGGRIESGRMTFYRGAGEAVDLAAASEDSMRAMRGND FT LGMIFQEPMTSLNPVFTVGAQIVEAIRLHQACDARAAQAAAKRILDQVRIPDSASILGR FT YPHELSGGMRQRVMIAMALSCKPALLIADEPTTALDVTIQAQILQLIRELQREMDMGVI FT FITHDMGVVAEVADRVLVMRKGDVVENNDVHGLFNAPSHPYTKALMAAVPRLGAMQGTT FT APARFALLSDAQARHEAEPPAVAPSDKVVLRVRDLVTRFDVRGGIFARVKKRVHAVEQV FT SFDLHAGETLSLVGESGCGKTSTGRSLLRLAKTTRGQIEFDGKPVRQEDPASLRALRRN FT MQFVFQDPFASLNPRMRVGDCVKEPMLIHNLYSGAQADRRAAELFERVGLDAAMMQRWP FT HEFSGGQRQRICIARALSVDPKVLIADESVSALDVSIQAQIVNLLIDLQRDLGVSYLFI FT SHDMAVVERISHRVAVMYLGQIVEIGPRQAIFENPQHPYTKKLMQAVPIADPGARRSIT FT LELSELPSPARPVGDEPVVKLLEQAGPGHFVARHRIGGAY" FT misc_feature 192637..193248 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 192658..192681 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 193018..193062 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 193555..194127 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 193576..193599 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 193897..193941 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS join(194436..195281,195281..196057) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3461" FT /product="bacterial extracellular solute-binding protein FT (pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 282. The sequence has been checked FT and believed to be correct. Similar to Haemophilus FT influenzae heme-binding protein A precursor HbpA FT SW:HBPA_HAEIN (P33950) (547 aa) fasta scores: E(): 3.5e-11, FT 26.3% id in 479 aa, and to Bradyrhizobium japonicum FT putative ABC transporter TR:Q9RH65 (EMBL:AF065159) (516 aa) FT fasta scores: E(): 1.4e-50, 36.51% id in 482 aa. Contains a FT frameshift after codon 261" FT /db_xref="PSEUDO:CAE43724.1" FT misc_feature 194436..194477 FT /note="Signal peptide predicted for BP3458 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.590 between residues 14 and 15" FT misc_feature join(194613..195281,195281..195349) FT /note="HMMPfam hit to PF00496, Bacterial extracellular FT solute-binding proteins, family 5" FT variation 195280 FT /note="T in pertussis; T(G) in parapertussis and FT bronchiseptica" FT misc_feature 195593..195718 FT /note="HMMPfam hit to PF00496, Bacterial extracellular FT solute-binding proteins, family 5" FT CDS 196047..197582 FT /transl_table=11 FT /locus_tag="BP3462" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti hypothetical protein FT MLL6676 TR:Q988M5 (EMBL:AP003009) (488 aa) fasta scores: FT E(): 2.7e-28, 31.18% id in 497 aa, and to Rhizobium FT meliloti hypothetical protein SMB21161 TR:CAC49227 FT (EMBL:AL603645) (477 aa) fasta scores: E(): 2.3e-25, 29.05% FT id in 499 aa" FT /db_xref="InterPro:IPR009197" FT /db_xref="InterPro:IPR010799" FT /db_xref="InterPro:IPR015995" FT /db_xref="UniProtKB/TrEMBL:Q7VTQ3" FT /protein_id="CAE43725.1" FT /translation="MSSNAPKVAILGFHLESNAFSPLSVEADFLAQCWEQGEDITRLAR FT GASRLPSEVPGFYARMDELGAWTPAPLIVIGAPPGGPASAGVWRRFLAEAETRLRAALP FT VDAVYVANHGASSAEGQDDTEGELMGRLRAIVGPGVPIVASHDLHCNVSEQTVQALDGL FT ISYRTNPHVDQRERAADAADMIHEILGGTRMVSAYVRLPLTPPSVTLLTSSGPYADLVA FT LGASLIQKPDEGPIANVSVCSGFVFSDLPKCGLTITVTARGDLQAARRAALRIARAGWA FT DRKRYVANTVEVARAVELARAAGQPLLFADVADNPGGGGGNTAWLLRAFHEARIPGVVL FT GVFVDPELAAQAAQLGEGAEFDAVFNRIETDYARRYQARARVLRLTDGEGMGWRGILRG FT RKFSLGASCLLELVDSGMRVVVGSLRRQLAEPAMLEMHGIDIARAGHVVVKSRGHYRAG FT FDEFFPDDRIHDVDSLGLTTPNLKQIAFKRLPRPVWPLDDAAAWQEPDWAEGL" FT CDS complement(197676..198617) FT /transl_table=11 FT /locus_tag="BP3463" FT /product="LysR family regulatory protein" FT /note="Similar to Escherichia coli cyn operon FT transcriptional activator CynR SW:CYNR_ECOLI (P27111) (311 FT aa) fasta scores: E(): 7.6e-13, 25.08% id in 295 aa, and to FT Rhizobium leguminosarum LysR family regulatory protein FT TR:Q52868 (EMBL:U39409) (300 aa) fasta scores: E(): FT 1.1e-18, 31.54% id in 298 aa" FT /db_xref="GOA:Q7VTQ2" FT /db_xref="InterPro:IPR000847" FT /db_xref="InterPro:IPR005119" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VTQ2" FT /protein_id="CAE43726.1" FT /translation="MLNTALRYFLEVVDAGSLTLAAQKLHVAPSAVSRMVRKLEGEHQA FT QLFERHARGMVLTEAGQLLKAYARRASLDAERARAEIRELSQIGQKLIRVSANQAFGRE FT LLPRVIGEFREIEPTVRFELNILQSSEINRRVREGEDDIGLSYNLAPPQDVHVQYARRM FT PLFAVMAPQHPLAGRDMLSMQDIGDYPVVLMGPGSTNRFFIDLCCMHEKIELNIAMTCN FT NQGAIQTCCQQWGAISFSGDLTVMTPTERGELVSIPMANSELHQRIMHIQTMADRQLPA FT SVGRFVQALASRINASYADPAWLAAGRGSGAL" FT misc_feature complement(198183..198611) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT CDS 198728..199528 FT /transl_table=11 FT /locus_tag="BP3464" FT /product="putative exported protein" FT /note="Poor database matches. C-terminus is similar to an FT internal region of Bordetella bronchiseptica putative FT membrane protein BbLPS1.18c TR:O87991 (EMBL:AJ007747) (340 FT aa) fasta scores: E(): 1.2e-09, 30.3% id in 198 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VTQ1" FT /protein_id="CAE43727.1" FT /translation="MAAARDKHIYIRMIKKRYLATAVVALAVAVAAALYARQDEPEHFD FT EVVLLCLDDQAMSTVRRTGSVDGILPACQPELAEVLGEDFGAVDEPTLRAVLATVAAAN FT FAEYGSSSAVACEAIEKSQHLNCGNLVFLMGYLYGGLKEKGIRPIGVDGGAVGNHAQIM FT YKSGNNRLLLDPTTGVVAAITFNKLMSGQPVPEEQVRVFRVKAKTIDSFRDRVYRAVVG FT GGYLPSDLMYMHESLWELKTKGSSSVYFTPGGITVRKKLAQAAG" FT misc_feature 198728..198835 FT /note="Signal peptide predicted for BP3464 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.496 between residues 36 and 37" FT CDS complement(199590..200096) FT /transl_table=11 FT /locus_tag="BP3465" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT SMC01149 TR:CAC41808 (EMBL:AL591783) (160 aa) fasta scores: FT E(): 3.7e-20, 40.76% id in 157 aa, and to Caulobacter FT crescentus hypothetical protein CC3077 TR:Q9A3X4 FT (EMBL:AE005971) (158 aa) fasta scores: E(): 3.4e-18, 37.5% FT id in 152 aa" FT /db_xref="GOA:Q7VTQ0" FT /db_xref="InterPro:IPR013538" FT /db_xref="UniProtKB/TrEMBL:Q7VTQ0" FT /protein_id="CAE43728.1" FT /translation="MTRQHSTQPDPKLDLVLERTIDVPPALVWQAWTQPEHIKHWLTPA FT PWQTVRCDVDLRPGGRFRFVMRSPEGEEHTHDCCYLEIVEGSRLVWTNALLPGFRPAGG FT GGDVPAFTAVIRIEPHDQGTRYTATAMHGTQAGCRQHSDMGFHDGWGAALDQLVAHARN FT MQQAS" FT CDS complement(200093..200431) FT /transl_table=11 FT /locus_tag="BP3466" FT /product="putative ArsR family transcriptional regulator" FT /note="Similar to Rhizobium loti transcriptional regulator FT MLL3772 TR:Q98FH5 (EMBL:AP003002) (111 aa) fasta scores: FT E(): 1.5e-16, 47.27% id in 110 aa, and to Agrobacterium FT tumefaciens hypothetical protein AGR_C_3675p TR:AAK87782 FT (EMBL:AE008119) (124 aa) fasta scores: E(): 8.9e-17, 46.42% FT id in 112 aa. Also similar to BP2145, 43.137% identity FT (43.137% ungapped) in 102 aa overlap." FT /db_xref="GOA:Q7VTP9" FT /db_xref="InterPro:IPR001845" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VTP9" FT /protein_id="CAE43729.1" FT /translation="MPNQAAQLSQVFQALSDPTRRAVLERLCQGSAAMSELARPFNMAL FT PSFSQHLDVLERCGLVRSRKSGRVRIYTLAPQPLGMAEHWMTRQRAIWERRLDQLDLYL FT QDLKEQKR" FT misc_feature complement(200153..200398) FT /note="HMMPfam hit to PF01022, Bacterial regulatory FT protein, arsR family" FT CDS 200860..203379 FT /transl_table=11 FT /locus_tag="BP3467" FT /product="putative exported protein" FT /note="Similar to Escherichia coli suppressor of OmpF FT assembly mutants, outer membrane protein AsmA SW:ASMA_ECOLI FT (P28249) (617 aa) fasta scores: E(): 0.0063, 23.79% id in FT 395 aa, and to Vibrio cholerae AsmA protein VC1039 FT TR:Q9KT66 (EMBL:AE004185) (703 aa) fasta scores: E(): FT 5.5e-20, 25.44% id in 837 aa" FT /db_xref="InterPro:IPR007844" FT /db_xref="UniProtKB/TrEMBL:Q7VTP8" FT /protein_id="CAE43730.1" FT /translation="MKTWFKRIVIGLVVLVVVAVVGLAIFLLTFDPNAYKYKLEEAVQA FT RYERTLNIEGEIELSLFPRIGLAVQGVSLSEPNSPDVFASIDSMRLAVAVWPLLSNSLV FT VDHVTINGFKARVIRGKDSHFNFENLVGGSVQSTDVPGNAAEATAGAITGTAQAIVNGT FT VSTPKSMQIDIAGLDLKDGEIQLQDAMSGMAVAITKLNAATGRVTYNQPFDVSLSARVE FT GGNPRLDAGLTGQAQLTLDPLAKRYAAQRLDLRMEGRLPGAQAKSLAARGNVAFNGMTS FT SLDVAGLEILFQGDIVDTATKLTNVEASVAMPKLAVDPHKTELQIDKLAVRAKGAMPGG FT PFELAVDAPALNISPTNASGDALSGRVRTQELDASFGLNGISGNAGELDIKEAKLDSTL FT KQGERVVKSAFASPVTLNLLQRSIGLSALKGDVNITDPGLPKGSLQIPVIGSVNANLLK FT DQANARINAVLEGGKFDLSADIVALSAVPRVTFALAVDTLDLDKLAPPAGASAPPKPAG FT DGKQDESKPPAKPQPAPAPAAADDSINLSGLVGPTASGTIKIGQLVMRGLKAEQVAANI FT KLEKGKLDISTLTAALYGGKLGGVMSVDAVNGNQLVAKMSLAGIAIQPLLSDLAGKDTL FT SGTGSLAFDLKTAGANTYAMKSGLAGTMQVRLRDGAIKGINVAQTLRELKAMFRGEAHD FT PTVQDDQTRQTDFTSLESDLVFNKGVATVKRLDMAAPLLRVNQGNPANIDFVRSELDFV FT ARVRVVNTSTGQDGKDLAELRNLTIPLLITGPFDKPVYTLQWREVAGEALKRGLEKQLK FT EALTGGEGASGSPAKNIDKALKGILGK" FT misc_feature 200860..200916 FT /note="Signal peptide predicted for BP3467 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.978) with cleavage site FT probability 0.261 between residues 19 and 20" FT misc_feature 202921..202992 FT /note="ScanRegExp hit to PS00179, Aminoacyl-transfer RNA FT synthetases class-II signature 1." FT CDS 203376..203762 FT /transl_table=11 FT /locus_tag="BP3468" FT /product="hypothetical protein" FT /note="Poor database matches. Similar to the N-terminal FT regions of Streptomyces coelicolor hypothetical protein FT SCG20A.02 TR:Q9K3N8 (EMBL:AL360055) (275 aa) fasta scores: FT E(): 0.025, 29.6% id in 125 aa, and Pseudomonas aeruginosa FT hypothetical protein PA3022 TR:Q9HZI4 (EMBL:AE004727) (268 FT aa) fasta scores: E(): 0.015, 31.06% id in 103 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VTP7" FT /protein_id="CAE43731.1" FT /translation="MSTTAYQPIAECGATTQSEAAAYQKRWLVANDAGQWLNRDLCPRL FT AEVSVELRMGYLVLKAPGMLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWI FT SNHAGVPCRILKVHPDMAEVRWPS" FT CDS complement(203770..204903) FT /transl_table=11 FT /locus_tag="BP3469" FT /product="putative transport protein" FT /note="Similar to Acinetobacter calcoaceticus benzoate FT membrane transport protein BenE SW:BENE_ACICA (P07775) (394 FT aa) fasta scores: E(): 1.1e-45, 40.21% id in 373 aa, and to FT Rhizobium loti hypothetical protein MLR5064 TR:Q98CP3 FT (EMBL:AP003005) (382 aa) fasta scores: E(): 3.5e-45, 39.72% FT id in 370 aa" FT /db_xref="GOA:Q7VTP6" FT /db_xref="InterPro:IPR004711" FT /db_xref="UniProtKB/TrEMBL:Q7VTP6" FT /protein_id="CAE43732.1" FT /translation="MSAIVAGLVAVLVSFGGTAVLMVQAGHAAGLDAARIGSWLGSICL FT ALGVGGALISLRSRIPVVFAWSTPGAALLVTGLVGVPFDQAVGAFVLAAALTLACGVFG FT WIDPIVRRIPAELAAAMLAGVLLNFGMGIFGSIAAQPVLVLSMCAAYLLGRRWAPRFAV FT LAVLVVGLAAASSLDLLRLGHVQWAWTEFVWTTPSFTWQAAISLGIPLFVVAMASQNLP FT GLAILQAAGYRPPASRLVGLLAAPFGAHSVTLGAIIAALCAGPEAHANPGRRYVAAATY FT GLTYVLLSVAAGAVAVFFQALPGALIAALAGLALLGAIMGGMTTAMADPQRREAALVTL FT LATASGISFWGIGSAFWGLAAGLATHGALAWRRARSA" FT misc_feature complement(join(203797..203862,203923..203988, FT 204010..204075,204121..204186,204250..204309, FT 204355..204420,204442..204492,204508..204564, FT 204586..204642,204655..204720,204736..204801)) FT /note="12 probable transmembrane helices predicted for FT BP3469 by TMHMM2.0 at aa 2-24, 34-56, 61-83, 87-106, FT 113-132, 137-154, 161-183, 198-218, 239-261, 276-298, FT 305-327 and 347-369" FT misc_feature complement(204820..204903) FT /note="Signal peptide predicted for BP3469 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.925 between residues 28 and 29" FT CDS complement(204967..205218) FT /transl_table=11 FT /gene="fdx" FT /locus_tag="BP3470" FT /product="ferredoxin" FT /note="Similar to Chromatium vinosum ferredoxin Fdx FT SW:FER_CHRVI (P00208) (82 aa) fasta scores: E(): 1.2e-17, FT 61.25% id in 80 aa, and to Pseudomonas aeruginosa FT ferredoxin PA0362 TR:Q9I6D2 (EMBL:AE004474) (83 aa) fasta FT scores: E(): 2.7e-21, 66.26% id in 83 aa" FT /db_xref="GOA:Q7VTP5" FT /db_xref="HSSP:1BLU" FT /db_xref="InterPro:IPR001450" FT /db_xref="InterPro:IPR017896" FT /db_xref="InterPro:IPR017900" FT /db_xref="UniProtKB/TrEMBL:Q7VTP5" FT /protein_id="CAE43733.1" FT /translation="MALKITEECINCDVCEPQCPNEAISMGADYYVIDPDRCTECVGHH FT DEPQCKVVCPVECIELHPQWQEGQEQLMAKYRRLTGAA" FT misc_feature complement(205039..205128) FT /note="HMMPfam hit to PF00037, 4Fe-4S binding domain" FT misc_feature complement(205144..205215) FT /note="HMMPfam hit to PF00037, 4Fe-4S binding domain" FT misc_feature complement(205159..205194) FT /note="ScanRegExp hit to PS00198, 4Fe-4S ferredoxins, FT iron-sulfur binding region signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS complement(205273..205782) FT /transl_table=11 FT /gene="coaD" FT /gene_synonym="kdtB" FT /locus_tag="BP3471" FT /product="phosphopantetheine adenylyltransferase" FT /EC_number="2.7.7.3" FT /note="Similar to Escherichia coli phosphopantetheine FT adenylyltransferase CoaD SW:COAD_ECOLI (P23875) (159 aa) FT fasta scores: E(): 1.1e-29, 52.28% id in 153 aa, and to FT Pseudomonas aeruginosa phosphopantetheine FT adenylyltransferase PA0363 SW:COAD_PSEAE (Q9I6D1) (159 aa) FT fasta scores: E(): 1.7e-34, 59.74% id in 154 aa" FT /db_xref="GOA:Q7VTP4" FT /db_xref="InterPro:IPR001980" FT /db_xref="InterPro:IPR004820" FT /db_xref="InterPro:IPR004821" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTP4" FT /protein_id="CAE43734.1" FT /translation="MIIAVYPGTFDPLTRGHEDLVRRAATLFDKVVVGIAHSRNKKPFF FT TIEERVDIAREVLGHYPNVEVHSFGGLLKDFVRDQNGRVIIRGLRAVSDFEYEFQMAGM FT NRHLLPDVETMFMTPSDQYQFISGTIVREIAQLGGDVSKFVFPSVERWLQAKAKERREQ FT SAQGGA" FT misc_feature complement(205372..205770) FT /note="HMMPfam hit to PF01467, Cytidylyltransferase" FT CDS complement(205803..206423) FT /transl_table=11 FT /locus_tag="BP3472" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli putative methylase YhhF FT SW:YHHF_ECOLI (P10120) (198 aa) fasta scores: E(): 4.3e-24, FT 44.94% id in 198 aa, and to Salmonella enterica FT subspenterica serovar Typhi conserved hypothetical protein FT STY4239 TR:CAD08058 (EMBL:AL627281) (198 aa) fasta scores: FT E(): 1.2e-23, 45.02% id in 191 aa" FT /db_xref="GOA:Q7VTP3" FT /db_xref="InterPro:IPR002052" FT /db_xref="InterPro:IPR004398" FT /db_xref="InterPro:IPR016065" FT /db_xref="UniProtKB/TrEMBL:Q7VTP3" FT /protein_id="CAE43735.1" FT /translation="MKPSRPGSKPIRIVGGLYRRTLIPVADAPGLRPTPDRVRETLFNW FT LNHLWGGEFADKRVLDLFAGSGALGFEAASRGAGQVQMVERDRGAAAALRTLRDKLQAG FT AVRIHAGDAMQVIERMDASRFDLVLLDPPFGQGWLERLWPLLPAVLAEDGLVYVESETA FT PAPPAGFELLREGKAGAVHYRLFQFAAMRKSMNNPALEDGASH" FT misc_feature complement(206022..206042) FT /note="ScanRegExp hit to PS00092, N-6 Adenine-specific DNA FT methylases signature." FT CDS 206493..207602 FT /transl_table=11 FT /gene="ftsY" FT /locus_tag="BP3473" FT /product="cell division protein" FT /note="Similar to the C-terminal regions of Escherichia FT coli cell division protein FtsY SW:FTSY_ECOLI (P10121) (497 FT aa) fasta scores: E(): 5.5e-34, 46.57% id in 350 aa, and FT Neisseria meningitidis cell division protein FtsY homologue FT NMA0291 SW:FTSY_NEIMA (P57010) (421 aa) fasta scores: E(): FT 4.1e-41, 54.15% id in 349 aa. Possibly truncated at the FT N-terminus" FT /db_xref="GOA:Q7VTP2" FT /db_xref="HSSP:1OKK" FT /db_xref="InterPro:IPR000897" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR004390" FT /db_xref="InterPro:IPR013822" FT /db_xref="UniProtKB/TrEMBL:Q7VTP2" FT /protein_id="CAE43736.1" FT /translation="MPMFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPE FT PQPQQPPEPQPPVAAAPEAPRKASWLSRLKQGLSRTGQNIGGLFVGVKVDENLFEELES FT ALIMADAGIEATEKLLAALRARVKKERIDDPAQVKTALRQLLADHLRPLERSFDLGRAQ FT PLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTV FT ISQDGGDPAAVAFDSVNAGRARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASA FT PHEVLLVVDGNTGQNALAQIRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPI FT PVYWIGVGEGLEDLQPFVADEFAAALLAD" FT misc_feature 206775..207593 FT /note="HMMPfam hit to PF00448, SRP54-type protein, GTPase FT domain" FT misc_feature 207003..207026 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(join(207649..208740,208744..209247)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3474" FT /product="conserved hypothetical protein (pseudogene)" FT /note="Pseudogene. This CDS contains an in-frame TGA stop FT codon. The sequence has been checked and believed to be FT correct. Similar to Vibrio cholerae hypothetical protein FT VC2440 TR:Q9KPD2 (EMBL:AE004314) (505 aa) fasta scores: FT E(): 7.4e-06, 25% id in 556 aa, and to Caulobacter FT crescentus hypothetical protein CC3522 TR:Q9A2N4 FT (EMBL:AE006010) (509 aa) fasta scores: E(): 2.9e-08, 32.24% FT id in 549 aa. Contains a nonsense mutation (opal) after FT codon 168" FT /db_xref="PSEUDO:CAE43737.1" FT variation complement(208741..208743) FT /note="In-frame TGA stop codon in pertussis; TGG in FT parapertussis and bronchiseptica" FT CDS complement(209430..210251) FT /transl_table=11 FT /locus_tag="BP3476" FT /product="binding-protein-dependent transport system FT permease protein" FT /note="Similar to Escherichia coli phosphonates transport FT system permease protein PhnE b4013/b4104 SW:PHNE_ECOLI FT (P16683) (276 aa) fasta scores: E(): 2.1e-22, 33.33% id in FT 246 aa, and to Bacillus halodurans alkylphosphonate ABC FT tranporter PH2976 TR:Q9K8M9 (EMBL:AP001517) (266 aa) fasta FT scores: E(): 1.9e-27, 37.03% id in 270 aa" FT /db_xref="GOA:Q7VTP1" FT /db_xref="InterPro:IPR000515" FT /db_xref="InterPro:IPR005769" FT /db_xref="UniProtKB/TrEMBL:Q7VTP1" FT /protein_id="CAE43738.1" FT /translation="MNTSVTSLEPGHPRTWQRYSGGQKALRFMLYLLLVAAIVQAVRSV FT EVIPEFLYDAPEQMAALLRRMWPIDWSYYPEGVHAALVETLHIATLGTILSVGMAVPVG FT LLAANNLTPSRTINMLARLILVSSRSVNSLVWALLFIAIFGPGALAGTLAIAFRSIGFV FT GKLVGEAIEEAQRGPIEALTATGASKAAVLWYGYWPQIRPSFWSIVLLRWDINVRESAV FT LGLVGAGGIGMALDTALNLFQWDRVALVLAAIFIVVVAAEIVITQARKRIL" FT misc_feature complement(join(209454..209510,209526..209591, FT 209784..209849,209913..209978,210126..210176)) FT /note="5 probable transmembrane helices predicted for FT BP3476 by TMHMM2.0 at aa 25-42, 91-113, 134-156, 220-242 FT and 247-266" FT misc_feature complement(209514..209744) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT CDS complement(210248..211147) FT /transl_table=11 FT /locus_tag="BP3477" FT /product="binding-protein-dependent transport systems inner FT membrane component" FT /note="Similar to Escherichia coli phosphonates transport FT system permease protein PhnE SW:PHNE_ECOLI (P16683) (276 FT aa) fasta scores: E(): 4.8e-31, 39.54% id in 263 aa, and to FT Pseudomonas stutzeri putative inner membrane component of FT binding-protein-dependent phosphite transporter protein FT PtxC TR:O69053 (EMBL:AF061070) (275 aa) fasta scores: E(): FT 2.4e-26, 36.96% id in 257 aa" FT /db_xref="GOA:Q7VTP0" FT /db_xref="InterPro:IPR000515" FT /db_xref="InterPro:IPR005769" FT /db_xref="UniProtKB/TrEMBL:Q7VTP0" FT /protein_id="CAE43739.1" FT /translation="MAGVTVRTANMARRPFSLSWRAKTGVLLVVLYTFYAAAQLDFSWA FT RFETGLGHAATFLARMFPPNFEKPDTLWKGIAESLEIAVLASVLGILLSLPIGLLGARN FT LMPAWASWPARALVALCRALRPVIVAILFVKAVGFGALAGILALTVASIGFIGKLFTEA FT IEEISLKQVEAVRASGASFGNVIIFGVLPQVFARFVGFATYQFDSNLRNSTMVGIVGAG FT GIGGTLFSAFQRFDYDFVAAILLTLIAIIMLGEILAGFVRKVFLDNMGFERILQRRFTA FT ARGLGSTTPLARKGEVDE" FT misc_feature complement(join(210365..210430,210443..210508, FT 210545..210610,210698..210763,210842..210907, FT 211031..211096)) FT /note="6 probable transmembrane helices predicted for FT BP3477 by TMHMM2.0 at aa 17-39, 80-102, 128-150, 179-201, FT 213-235 and 239-261" FT misc_feature complement(210449..210661) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT CDS complement(join(211135..211614,212664..212954)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3479" FT /product="putative transport system ATP-binding protein FT (pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Escherichia coli phosphonates FT transport ATP-binding protein PhnC SW:PHNC_ECOLI (P16677) FT (262 aa) fasta scores: E(): 5.5e-26, 40.94% id in 254 aa, FT and to Bacillus halodurans phosphonates transport system FT BH0469 TR:Q9KFL0 (EMBL:AP001508) (247 aa) fasta scores: FT E(): 1.4e-32, 46.53% id in 245 aa. CDS is disrupted by the FT insertion of an IS element after codon 97" FT /db_xref="PSEUDO:CAE43740.1" FT misc_feature complement(211219..211599) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(211405..211449) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(211614..212564) FT /transl_table=11 FT /locus_tag="BP3478" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7VTN9" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR012337" FT /db_xref="UniProtKB/TrEMBL:Q7VTN9" FT /protein_id="CAE43741.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFFFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT repeat_region 211614..211645 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(211614..212666) FT misc_feature complement(211650..212183) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(212635..212666) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT misc_feature complement(212820..212843) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(212957..213964) FT /transl_table=11 FT /locus_tag="BP3481" FT /product="putative exported protein" FT /note="Weakly similar to Escherichia coli FT phosphonates-binding periplasmic protein precursor PhnD FT SW:PHND_ECOLI (P16682) (338 aa) fasta scores: E(): 6.7e-09, FT 23.91% id in 276 aa, and to Pseudomonas stutzeri putative FT binding protein component of binding-protein-dependent FT phosphite transporter PtxB TR:O69052 (EMBL:AF061070) (287 FT aa) fasta scores: E(): 6.9e-14, 28.13% id in 263 aa" FT /db_xref="GOA:Q7VTN8" FT /db_xref="InterPro:IPR005770" FT /db_xref="UniProtKB/TrEMBL:Q7VTN8" FT /protein_id="CAE43742.1" FT /translation="MRAKRLLQAAAVTALIFGSYAAQAADAACSNRGDLDNMYCDANKD FT LVADTPTDKSKLKTPSTLVFTYTPVEDPAVYEDIFKPFTKHLSECTGKRVVFYQVQSNA FT AEIEAMRSGRLHVGCFSTGPTAFAVNIAGAVPFAVKGYADEFQGYNLIVIVKKDSPYQK FT LTDLKGKKLAHTAPSSNSGHMAPVALFPKEGLTPDKDYKVIFSGKHDQSVMGVNSGDYD FT AAAVASDVFKRMAERGQVKEEDFRVIYRSEKFPTSSFAYAHDLEPAFRDKMLKCFYDYR FT FPDEMKKAFDGADRFYPVTYQKDWAIVREVAESGGEKFNRAAYDRETAKSKGKQ" FT misc_feature complement(213893..213964) FT /note="Signal peptide predicted for BP3481 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.923 between residues 24 and 25" FT CDS complement(214113..214940) FT /transl_table=11 FT /locus_tag="BP3482" FT /product="putative transcriptional regulator" FT /note="Similar to Streptomyces coelicolor glycerol operon FT regulatory protein GylR SW:GYLR_STRCO (P15360) (254 aa) FT fasta scores: E(): 3.9e-09, 26.74% id in 258 aa, and to FT Pseudomonas aeruginosa probable transcriptional regulator FT PA2010 TR:Q9I2A1 (EMBL:AE004627) (267 aa) fasta scores: FT E(): 7.1e-22, 34.45% id in 267 aa" FT /db_xref="GOA:Q7VTN7" FT /db_xref="InterPro:IPR005471" FT /db_xref="InterPro:IPR014757" FT /db_xref="UniProtKB/TrEMBL:Q7VTN7" FT /protein_id="CAE43743.1" FT /translation="MSAAKSTAKPAAAPGNDGRRSIQSVEVGFPLLAALVDAGRPLTLR FT DLAGAAGMTSAKAHPYLVSFTRVGLVQQDTVTGQYELGPFALQMGLVSLQRLDPVRVAL FT PEVDKLQSEIGHTLGIAVLGSHGPTMIHITEASYPVHVNMRKGTVMSMLHTATGQVFAA FT WLPPKVAEHYIAREDGDAAVIASLTPRKTTRANLDAMLADIRVHGMARALGNPLPGVDA FT LSVPVFDHTGGIVLALTSLGPTGLFDASFTGAIARPLLACAQEISRKLGYRGN" FT misc_feature complement(214134..214703) FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator" FT CDS complement(214946..215743) FT /transl_table=11 FT /locus_tag="BP3483" FT /product="haloacid dehalogenase-like hydrolase" FT /note="Poor database matches. Weakly similar to FT Mycobacterium leprae hypothetical protein ML0089 TR:Q9CDB9 FT (EMBL:AL583917) (281 aa) fasta scores: E(): 2.2, 25.44% id FT in 279 aa, and to Streptomyces coelicolor conserved FT hypothetical protein SCD16A.02c TR:Q9XAS3 (EMBL:AL078618) FT (269 aa) fasta scores: E(): 6.9, 26.54% id in 275 aa" FT /db_xref="GOA:Q7VTN6" FT /db_xref="InterPro:IPR006379" FT /db_xref="InterPro:IPR013200" FT /db_xref="UniProtKB/TrEMBL:Q7VTN6" FT /protein_id="CAE43744.1" FT /translation="MQALAAMPAPVAASVRIVLTDIDDTLTTEGRLPAGAYAALERLEQ FT AGIVVVPITGRPAGWCDHIARMWPVRAVVGENGAFYYAYDRSARRMNAHYWADAATRAA FT NRQALQAIRERVLREVPGTAVASDQDYRVADLAIDFCEDVPALPDSAVGRIVEIFHEAG FT AQAKVSSIHVNGWFGDYDKLTMTRTLFEREFGLSIDSALQHTLFIGDSPNDEPMFKFFP FT ISVGVANIQSQLHRIQHRPAFVAAARGGDGFVEMAERLLANRG" FT misc_feature complement(215051..215701) FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase" FT CDS 215889..217064 FT /transl_table=11 FT /gene="ribB" FT /locus_tag="BP3484" FT /product="putative 3,4-dihydroxy-2-butanone 4-phosphate FT synthase" FT /note="Similar to Photobacterium phosphoreum FT 3,4-dihydroxy-2-butanone 4-phosphate synthase RibB FT SW:RIBB_PHOPO (P51962) (363 aa) fasta scores: E(): 2.6e-64, FT 48.9% id in 366 aa, and to Neisseria meningitidis GTP FT cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate FT synthase NMB1256 TR:Q9JZ77 (EMBL:AE002473) (363 aa) fasta FT scores: E(): 8.6e-73, 53.97% id in 365 aa. Possible FT alternative translational start site" FT /db_xref="GOA:Q7VTN5" FT /db_xref="HSSP:1G58" FT /db_xref="InterPro:IPR000422" FT /db_xref="InterPro:IPR000926" FT /db_xref="InterPro:IPR016299" FT /db_xref="InterPro:IPR017945" FT /db_xref="UniProtKB/TrEMBL:Q7VTN5" FT /protein_id="CAE43745.1" FT /translation="MSAQISPLNAGAAPESFGIASVPEIIAELRAGRIVILVDEEDREN FT EGDLVMAAEFVTPEAINFMVTHGRGLVCLTLTEERCRQLDLPLMASRNGTRYGTNFTQS FT IEAAEGVETGISAADRARTIQVAVARDAQPSDLVQPGHIFPVRAVPGGVLVRAGHTEAG FT CDLTAMGGLTPAAVICEILKPDGTMARLPDLVEFAREHKLKIGTIADLIQYRSEHESII FT ARMGERMMQTPWGDFRCIAYRDDATRSPHLALVHGNIDPERETLVRVHEPASLFDVLDT FT GASPHSWSVGQALHAIAASPAGVLVLMNCQSSTEHLFGQIANWAGPAERAAAQEGDRFG FT LRTYGIGAQILRDLNVGRMKLLARPRKMPSMAGFALTITGYDCVPPNLRND" FT misc_feature 215952..216539 FT /note="HMMPfam hit to PF00926, 3,4-dihydroxy-2-butanone FT 4-phosphate synthase" FT misc_feature 216546..217040 FT /note="HMMPfam hit to PF00925, GTP cyclohydrolase II" FT CDS 217078..217599 FT /transl_table=11 FT /gene="ribH" FT /locus_tag="BP3485" FT /product="putative 6,7-dimethyl-8-ribityllumazine synthase" FT /EC_number="2.5.1.9" FT /note="Similar to Bacillus subtilis FT 6,7-dimethyl-8-ribityllumazine synthase RibH SW:RISB_BACSU FT (P11998) (154 aa) fasta scores: E(): 1.4e-16, 46.71% id in FT 152 aa, and to Neisseria meningitidis FT 6,7-dimethyl-8-ribityllumazine synthase NMA0886 FT SW:RISB_NEIMA (Q9JQV6) (158 aa) fasta scores: E(): 9.8e-24, FT 54.48% id in 156 aa" FT /db_xref="GOA:Q7VTN4" FT /db_xref="InterPro:IPR002180" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTN4" FT /protein_id="CAE43746.1" FT /translation="MNPYILTPDLNGEGLHIGIVRARFNEEIGQAQLQACLEELGKLGV FT DERDVMVVSVPGALELGVALARMAESYEFDALIALGAVIRGETYHFEVVSNESAAAISR FT IALETGIPVANGVLTVDTDEQAQARAAGKGADCAQVAVEMANLAAALEPEEDDEDDEDE FT DFDDEEDDGR" FT misc_feature 217111..217530 FT /note="HMMPfam hit to PF00885, FT 6,7-dimethyl-8-ribityllumazine synthase" FT CDS 217607..218071 FT /transl_table=11 FT /gene="nusB" FT /gene_synonym="ssyB" FT /locus_tag="BP3486" FT /product="N utilization substance protein B" FT /note="Similar to Escherichia coli N utilization substance FT protein B NusB SW:NUSB_ECOLI (P04381) (139 aa) fasta FT scores: E(): 1.8e-17, 45.58% id in 136 aa, and to FT Pseudomonas aeruginosa N utilization substance protein B FT PA4052 TR:Q9HWX6 (EMBL:AE004821) (159 aa) fasta scores: FT E(): 8.1e-25, 51.03% id in 145 aa" FT /db_xref="GOA:Q7VTN3" FT /db_xref="InterPro:IPR006027" FT /db_xref="InterPro:IPR011605" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTN3" FT /protein_id="CAE43747.1" FT /translation="MQARANARSARRRAREFALQGVYAWLLRGGEGTQDAGEIDAHLRD FT AEDFSEADAQWFKTLLHGVLREAPVLRERFLPYIDRPLAELSPVEHGILLIGSFELMHH FT VEVPYKVAINEAVELAKSFGGTDGFKFVNGVLDKLAADVRTAEVQAAPRR" FT misc_feature 217634..218026 FT /note="HMMPfam hit to PF01029, NusB family" FT CDS 218111..219127 FT /transl_table=11 FT /gene="thiL" FT /locus_tag="BP3487" FT /product="putative thiamine-monophosphate kinase" FT /EC_number="2.7.4.16" FT /note="Similar to Escherichia coli thiamine-monophosphate FT kinase ThiL SW:THIL_ECOLI (P77785) (325 aa) fasta scores: FT E(): 3.8e-39, 44.13% id in 324 aa, and to Xylella FT fastidiosa thiamine-monophosphate kinase XF0956 TR:Q9PES2 FT (EMBL:AE003934) (324 aa) fasta scores: E(): 5.4e-44, 47.85% FT id in 326 aa" FT /db_xref="GOA:Q7VTN2" FT /db_xref="InterPro:IPR000728" FT /db_xref="InterPro:IPR006283" FT /db_xref="InterPro:IPR010918" FT /db_xref="InterPro:IPR016188" FT /db_xref="UniProtKB/TrEMBL:Q7VTN2" FT /protein_id="CAE43748.1" FT /translation="MLAGVALASEFDLIARYFTRPAPDGVLGVGDDCALFPVPPGQQVA FT TSTDLLIEGRHFFPDVDPQALGHKALAVNLSDLAAMGARPVGCLLGLALPGVDEAWLAA FT FARGFQALADTHACPLIGGDTTRAPQGLLAISVTVFGAVAPGHALRRAAAQPGDDVWVS FT GELGAADIAYRLLDRQLPADPLRLAATRAALEWPRPRVELGMALAGLARAGIDISDGLL FT QDLGHILAASGVAAELRYDALPVAAALAGLPAETVRRAALGGGDVYELCFTADPAHRQA FT IRQAAHGAGAPVSRIGRILAGQGLRVLDADGAPLGELPGGFDHFSDATDQPAPDRRP" FT misc_feature 218129..219013 FT /note="HMMPfam hit to PF00586, AIR synthase related FT protein, N-terminal domain" FT CDS 219160..219666 FT /transl_table=11 FT /locus_tag="BP3488" FT /product="putative phosphatidylglycerophosphatase" FT /note="Similar to Escherichia coli FT phosphatidylglycerophosphatase A PgpA SW:PGPA_ECOLI FT (P18200) (172 aa) fasta scores: E(): 1e-15, 39.31% id in FT 145 aa, and to Pseudomonas aeruginosa FT phosphatidylglycerophosphatase A PA4050 TR:Q9HWX8 FT (EMBL:AE004821) (171 aa) fasta scores: E(): 1.2e-21, 39.28% FT id in 168 aa" FT /db_xref="GOA:Q7VTN1" FT /db_xref="InterPro:IPR007686" FT /db_xref="UniProtKB/TrEMBL:Q7VTN1" FT /protein_id="CAE43749.1" FT /translation="MQVRTRVSYPSWSWVRARPARLLAFGLGSGLLRPASGTWGTLLAW FT LSWFVFAPLAPDWALGMGIAAAFAYGCLACGQAGRELGVSDHVGMVWDEIVAFWLVLWL FT VPQTVAAQALAFVLFRVFDIAKPPPIKYFDARIKGGFGVMWDDIVAAAYTLLVMAILVR FT MGVFT" FT misc_feature join(219244..219312,219331..219399,219442..219510, FT 219577..219645) FT /note="4 probable transmembrane helices predicted for FT BP3488 by TMHMM2.0 at aa 41-63, 70-92, 107-129 and 152-174" FT CDS 219663..220229 FT /transl_table=11 FT /locus_tag="BP3489" FT /product="conserved hypothetical protein" FT /note="Similar to Enterobacter agglomerans hypothetical FT protein SW:YGAD_ENTAG (P51967) (164 aa) fasta scores: E(): FT 7.4e-22, 50.6% id in 166 aa, and to the C-terminal region FT of Streptococcus pneumoniae putative competence-damage FT protein CinA SW:CINA_STRPN (P54184) (418 aa) fasta scores: FT E(): 5.1e-08, 37.33% id in 150 aa. CDS contains extra FT residues at the N-terminus in comparison to orthologues" FT /db_xref="InterPro:IPR008136" FT /db_xref="UniProtKB/TrEMBL:Q7VTN0" FT /protein_id="CAE43750.1" FT /translation="MSLHDTQGRAGLAPTPLTAAAIQGLAEMVGEALLRRDWMMGTAES FT CTGGLLAGAVTSVAGSSDWFERGFVTYSNAAKVAELGVSGETLDHYGAVSEPVALEMAN FT GVLLATPSAQVGVSTTGIAGPGGATPGKPVGMVCFGFAMRAHGGITSRAITHVFPGDRA FT QVRNASVEFALRGILEFLGEPVNRG" FT misc_feature 219726..220205 FT /note="HMMPfam hit to PF02464, Competence-damaged protein" FT CDS complement(220367..221188) FT /transl_table=11 FT /gene="pyrF" FT /locus_tag="BP3490" FT /product="putative orotidine 5'-phosphate decarboxylase" FT /EC_number="4.1.1.23" FT /note="Similar to Thermus aquaticus orotidine 5'-phosphate FT decarboxylase PyrF SW:DCOP_THETH (P96076) (241 aa) fasta FT scores: E(): 1e-22, 39.92% id in 258 aa, and to FT Halobacterium salinarum orotidine-5'-monophosphate FT decarboxylase VNG1673G TR:Q9P9M3 (EMBL:AF187997) (267 aa) FT fasta scores: E(): 2.5e-36, 44.2% id in 276 aa" FT /db_xref="GOA:Q7VTM9" FT /db_xref="HSSP:1DVJ" FT /db_xref="InterPro:IPR001754" FT /db_xref="InterPro:IPR011060" FT /db_xref="InterPro:IPR011995" FT /db_xref="InterPro:IPR013785" FT /db_xref="InterPro:IPR018089" FT /db_xref="UniProtKB/Swiss-Prot:Q7VTM9" FT /protein_id="CAE43751.1" FT /translation="MTFLKKLEHAWSASQSLLQVGLDPDPKRFPRELEGKPDAIFQFCR FT DIVDATAPYACSFKPQIAYFAAHRAEDQLEALCQHIRAQHPDLPIVLDAKRGDIGSTAE FT NYAREAFERYQAHALTVSPYMGLDSVEPYLAWGDRGVIVLCRTSNPGGSDLQFLKMADG FT QPLYLHVAGLVADKWNANGQCGLVVGATFPNELAAVRQRIGDAVPLLVPGIGAQGGDIN FT ATVQAGANSAGAGMMINSSRAILYASTGEDWRQAAGEAARGLRDAINAVRT" FT misc_feature complement(220880..220921) FT /note="ScanRegExp hit to PS00156, Orotidine 5'-phosphate FT decarboxylase active site." FT CDS complement(221196..222515) FT /transl_table=11 FT /gene="ndh" FT /locus_tag="BP3491" FT /product="putative NADH dehydrogenase" FT /EC_number="1.6.99.3" FT /note="Similar to Escherichia coli NADH dehydrogenase Ndh FT SW:DHNA_ECOLI (P00393) (433 aa) fasta scores: E(): 1.6e-60, FT 43.18% id in 433 aa, and to Pseudomonas fluorescens NADH FT dehydrogenase II Ndh TR:Q9KGX0 (EMBL:AF281147) (432 aa) FT fasta scores: E(): 3.5e-68, 46.89% id in 435 aa" FT /db_xref="GOA:Q7VTM8" FT /db_xref="InterPro:IPR001327" FT /db_xref="InterPro:IPR013027" FT /db_xref="UniProtKB/TrEMBL:Q7VTM8" FT /protein_id="CAE43752.1" FT /translation="MTQTPNTGSPHRVVIVGGGAGGLELAAKLGRAHGRERVTLVDSRP FT FHIWKPSLHEAAAGTLDIHQEGLSYLMLANMCNFTFAQGELQGIERERRQIQVGPVADP FT SGQQVLPPRELSYDTLVLAMGSTSNFFNTPGAAEHAVTLDTTENAEQFRLTMLKAMVQV FT DLRKVHDPSARLDLVIVGGGATGVELAVELIEASHVVSAYGLPNFRADRDLVITLVEGA FT PRILSALPEKISRATHARLTELGVRVETDCRVAEVGADHVVTADGRRFEATMCLWAAGI FT EGPPLFRQLGLPLNRLGQLEVNERQESPDPHILALGDCCAAPWKDGRTVPARAQAAHQQ FT ADYLARKLTARLRNAAEPTEAYAYHDHGSLVSLGQGSGVGSLMGKLAGRGLFVSGTLAR FT LMYMSLHLMHHRAVLGISRTATLALARLLMRRTRPRVKLH" FT misc_feature complement(221559..222179) FT /note="HMMPfam hit to PF00070, Pyridine FT nucleotide-disulphide oxidoreductase" FT CDS complement(222566..222964) FT /transl_table=11 FT /gene="dgkA" FT /locus_tag="BP3492" FT /product="putative diacylglycerol kinase" FT /EC_number="2.7.1.107" FT /note="Similar to Escherichia coli diacylglycerol kinase FT DgkA SW:KDGL_ECOLI (P00556) (121 aa) fasta scores: E(): FT 8.8e-15, 46.61% id in 118 aa, and to Pseudomonas aeruginosa FT diacylglycerol kinase PA3603 TR:Q9HY23 (EMBL:AE004780) (123 FT aa) fasta scores: E(): 6.6e-19, 50% id in 120 aa" FT /db_xref="GOA:Q7VTM7" FT /db_xref="InterPro:IPR000829" FT /db_xref="UniProtKB/TrEMBL:Q7VTM7" FT /protein_id="CAE43753.1" FT /translation="MAHTPHPSPFKSTGGLRRILNALRYSLQGLKAAIKYEAAFRQELV FT LAILLVPAAFFLGRTTDEVFILIASVILVLVAELLNSAIEALADALSVETHPLLGRAKD FT LGSAAVMLMLLFTLAVWVAVLISRFVLD" FT misc_feature complement(join(222572..222637,222704..222769, FT 222791..222847)) FT /note="3 probable transmembrane helices predicted for FT BP3492 by TMHMM2.0 at aa 39-58, 65-87 and 109-131" FT misc_feature complement(222584..222919) FT /note="HMMPfam hit to PF01219, Prokaryotic diacylglycerol FT kinase" FT CDS complement(223053..223943) FT /transl_table=11 FT /gene="brkB" FT /locus_tag="BP3493" FT /product="serum resistance protein" FT /note="Similar to Bordetella pertussis serum resistance FT protein BrkB TR:Q45339 (EMBL:U12276) (296 aa) fasta scores: FT E(): 3.8e-111, 100% id in 296 aa. Similar to the N-terminal FT region of Rhizobium loti hypothetical protein MLL2378 FT TR:Q98IJ2 (EMBL:AP002999) (339 aa) fasta scores: E(): FT 3.1e-35, 39.28% id in 280 aa" FT /db_xref="GOA:Q45339" FT /db_xref="InterPro:IPR004664" FT /db_xref="InterPro:IPR017039" FT /db_xref="UniProtKB/TrEMBL:Q45339" FT /protein_id="CAE43754.1" FT /translation="MRLPRQIRLPHLRDIGALLTDSAREWSRHRASSKGAALSLYMVFS FT LAPMLILVIAVAGAFFGEEAVRSELFSQVRDLTGERGAEVIQTVLASAHESGSGWLAAL FT LSICVLVFSATTAFAELKASLDELWDVKEDKSGLQGLVRSRMLSFGLVLVLALFLLLSL FT TLNAALGAAKGYYGDLWSTSAFAMAADWLSNLFSFAVVTALFAVVYKLLPSKRIPWLDV FT IPGAIVTAALFLAGKWGIGLYLGRGAAVSAYGAAGSLIALLLWIYYSAQIFFFGAVFTR FT QFAERFGSLRRAAPA" FT misc_feature complement(join(223116..223181,223212..223277, FT 223317..223382,223428..223493,223581..223646, FT 223764..223829)) FT /note="6 probable transmembrane helices predicted for FT BP3493 by TMHMM2.0 at aa 38-60, 99-121, 150-172, 187-209, FT 222-244 and 254-276" FT CDS 224245..227277 FT /transl_table=11 FT /gene="brkA" FT /locus_tag="BP3494" FT /product="serum resistance protein" FT /note="Previously sequenced as Bordetella pertussis serum FT resistance protein BrkA TR:Q45340 (EMBL:U12276) (1010 aa) FT fasta scores: E(): 0, 100% id in 1010 aa. Similar to FT Bordetella pertussis pertactin precursor Prn SW:PERT_BORPE FT (P14283) (910 aa) fasta scores: E(): 4.2e-52, 38.36% id in FT 915 aa" FT /db_xref="GOA:Q45340" FT /db_xref="HSSP:1DAB" FT /db_xref="InterPro:IPR003991" FT /db_xref="InterPro:IPR004899" FT /db_xref="InterPro:IPR005546" FT /db_xref="InterPro:IPR006315" FT /db_xref="InterPro:IPR011050" FT /db_xref="InterPro:IPR012332" FT /db_xref="UniProtKB/TrEMBL:Q45340" FT /protein_id="CAE43755.1" FT /translation="MYLDRFRQCPSSLQIPRSAWRLHALAAALALAGMARLAPAAAQAP FT QPPVAGAPHAQDAGQEGEFDHRDNTLIAVFDDGVGINLDDDPDELGETAPPTLKDIHIS FT VEHKNPMSKPAIGVRVSGAGRALTLAGSTIDATEGGIPAVVRRGGTLELDGVTVAGGEG FT MEPMTVSDAGSRLSVRGGVLGGEAPGVGLVRAAQGGQASIIDATLQSILGPALIADGGS FT ISVAGGSIDMDMGPGFPPPPPPLPGAPLAAHPPLDRVAAVHAGQDGKVTLREVALRAHG FT PQATGVYAYMPGSEITLQGGTVSVQGDDGAGVVAGAGLLDALPPGGTVRLDGTTVSTDG FT ANTDAVLVRGDAARAEVVNTVLRTAKSLAAGVSAQHGGRVTLRQTRIETAGAGAEGISV FT LGFEPQSGSGPASVDMQGGSITTTGNRAAGIALTHGSARLEGVAVRAEGSGSSAAQLAN FT GTLVVSAGSLASAQSGAISVTDTPLKLMPGALASSTVSVRLTDGATAQGGNGVFLQQHS FT TIPVAVALESGALARGDIVADGNKPLDAGISLSVASGAAWHGATQVLQSATLGKGGTWV FT VNADSRVQDMSMRGGRVEFQAPAPEASYKTLTLQTLDGNGVFVLNTNVAAGQNDQLRVT FT GRADGQHRVLVRNAGGEADSRGARLGLVHTQGQGNATFRLANVGKAVDLGTWRYSLAED FT PKTHVWSLQRAGQALSGAANAAVNAADLSSIALAESNALDKRLGELRLRADAGGPWART FT FSERQQISNRHARAYDQTVSGLEIGLDRGWSASGGRWYAGGLLGYTYADRTYPGDGGGK FT VKGLHVGGYAAYVGDGGYYLDTVLRLGRYDQQYNIAGTDGGRVTADYRTSGAAWSLEGG FT RRFELPNDWFAEPQAEVMLWRTSGKRYRASNGLRVKVDANTATLGRLGLRFGRRIALAG FT GNIVQPYARLGWTQEFKSTGDVRTNGIGHAGAGRHGRVELGAGVDAALGKGHNLYASYE FT YAAGDRINIPWSFHAGYRYSF" FT misc_feature 224245..224370 FT /note="Signal peptide predicted for BP3494 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.649 between residues 42 and 43" FT CDS complement(227381..229024) FT /transl_table=11 FT /gene="cpn60" FT /gene_synonym="groEL" FT /gene_synonym="mopA" FT /gene_synonym="groL" FT /locus_tag="BP3495" FT /product="60 kDa chaperonin" FT /note="Previously sequenced as Bordetella pertussis 60 kDa FT chaperonin Cpn60 SW:CH60_BORPE (P48210) (547 aa) fasta FT scores: E(): 7.8e-180, 100% id in 547 aa. Similar to FT Burkholderia cepacia 60 kDa chaperonin GroEL SW:CH60_BURCE FT (Q9ZFE0) (546 aa) fasta scores: E(): 5.6e-151, 83.15% id in FT 546 aa" FT /db_xref="GOA:P48210" FT /db_xref="InterPro:IPR001844" FT /db_xref="InterPro:IPR002423" FT /db_xref="InterPro:IPR018370" FT /db_xref="UniProtKB/Swiss-Prot:P48210" FT /protein_id="CAE43756.1" FT /translation="MAAKQVLFADEARVRIVRGVNVLANAVKTTLGPKGRNVVLERSFG FT APTVTKDGVSVAKEIELKDKFENIGAQLVKDVASKTSDNAGDGTTTATVLAQAVVQEGL FT KYVAAGFNPIDLKRGIDKAVAAAVEELKKLSKPVTTSKEIAQVGSISANSDASIGQIIA FT DAMDKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINSPEKQVAALDDPYVLI FT YDKKVSNIRDLLPVLEQVAKSSRPLLIIAEDVEGEALATLVVNNIRGILKTTAVKAPGF FT GDRRKAMLEDIAILTGGTVISEETGMSLEKATLQDLGQAKRIEVAKENTTIIDGAGDGK FT SIEARVKQIRAQIEEATSDYDREKLQERVAKLAGGVAVIRVGAATEVEMKEKKARVEDA FT LHATRAAVEEGVVPGGGVALLRAKQAITGLKGDTADQNAGIKLILRAVEEPLRTIVTNA FT GDEASVVVNTVLNGKGNYGYNAATGEYGDLVEQGVLDPTKVTRTALQNAASVASLLLTA FT EAAVVELMENKPAAAPAMPGGMGGMGGMDF" FT misc_feature complement(227450..228958) FT /note="HMMPfam hit to PF00118, TCP-1/cpn60 chaperonin FT family" FT misc_feature complement(227777..227812) FT /note="ScanRegExp hit to PS00296, Chaperonins cpn60 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(229057..229344) FT /transl_table=11 FT /gene="cpn10" FT /gene_synonym="groES" FT /locus_tag="BP3496" FT /product="10 kDa chaperonin" FT /note="Previously sequenced as Bordetella pertussis 10 kDa FT chaperonin Cpn10 SW:CH10_BORPE (P48221) (95 aa) fasta FT scores: E(): 3.1e-32, 100% id in 95 aa. Similar to FT Burkholderia vietnamiensis 10 kDa chaperonin GroES FT TR:Q9ZFD9 (EMBL:AF104908) (97 aa) fasta scores: E(): FT 1.4e-24, 74.46% id in 94 aa" FT /db_xref="GOA:P0A339" FT /db_xref="InterPro:IPR001476" FT /db_xref="InterPro:IPR011032" FT /db_xref="InterPro:IPR018369" FT /db_xref="InterPro:IPR020818" FT /db_xref="UniProtKB/Swiss-Prot:P0A339" FT /protein_id="CAE43757.1" FT /translation="MALRPLHDRVIVKRLDNERKTASGIVIPDSAAEKPDQGEVVAVGP FT GKKTEDGKILPVDLKAGDKVLFGKYAGQTVKVDGEELLVIREDEILAVIQ" FT misc_feature complement(229060..229344) FT /note="HMMPfam hit to PF00166, Chaperonin 10 Kd subunit" FT misc_feature complement(229264..229338) FT /note="ScanRegExp hit to PS00681, Chaperonins cpn10 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(229678..230307) FT /transl_table=11 FT /locus_tag="BP3497" FT /product="hypothetical protein" FT /note="No significant database matches to the full length FT CDS. N-terminus is similar to the N-terminal region of FT Agrobacterium tumefaciens AGR_L_563p TR:AAK88851 FT (EMBL:AE008228) (228 aa) fasta scores: E(): 8.2e-07, 36.58% FT id in 82 aa. Also similar to BP3499, 40.385% identity FT (41.584% ungapped) in 208 aa overlap." FT /db_xref="UniProtKB/TrEMBL:Q7VTM6" FT /protein_id="CAE43758.1" FT /translation="MTHSKALLLVSMEPPAGMEAEFNDWYDTEHLPERAGLPGFETALR FT YVCVAGWPRYLALYDLSNIEVLDDKPYQDVSGERFSPWSKRVLNRVRGQSRMAAQQVYP FT RQAITQRAPRLLLLRFVGLTLQHEADLVSTLRSAFSNRAGVQQLRVYREPADNGPRFLA FT LVEAHESFSHQEKTSGLGPYARHLDMINEYTPYWTRGALHGVYPES" FT CDS complement(230304..231005) FT /transl_table=11 FT /locus_tag="BP3498" FT /product="conserved hypothetical protein" FT /EC_number="4.1.1.76" FT /note="Similar to Bordetella bronchiseptica arylmalonate FT decarboxylase SW:AMDA_BORBR (Q05115) (240 aa) fasta scores: FT E(): 3.9e-06, 27.31% id in 216 aa, and to Pyrococcus FT horikoshii hypothetical arylmalonate decarboxylase PH1150 FT TR:O58884 (EMBL:AP000005) (236 aa) fasta scores: E(): FT 5.2e-15, 30% id in 210 aa. Possible alternative FT translational start site" FT /db_xref="GOA:Q7VTM5" FT /db_xref="InterPro:IPR015942" FT /db_xref="UniProtKB/TrEMBL:Q7VTM5" FT /protein_id="CAE43759.1" FT /translation="MHKSHYQRFIMPTAIRIGVLIPENNTRVAEELPLWLPGCRLEVVK FT IPRDKGLLNAAALPAYKENALALAREKLGTGDIDVVAYGCTAAGFLLGPVGDQELARQL FT RENTGKPVATIASSMTSVLTQDGIRKVAVVTPYSDAVNAQLKGFISNAGIEIAAFDSLY FT AKDVDELGRISAQAVSHIARQTMNDDCEAMFIACAQLPTFNVLHQLETEFGRPVYSSIQ FT AMATQIQAIAS" FT misc_feature complement(230730..230780) FT /note="ScanRegExp hit to PS00606, Beta-ketoacyl synthases FT active site." FT CDS complement(231054..231689) FT /transl_table=11 FT /locus_tag="BP3499" FT /product="hypothetical protein" FT /note="No significant database matches to the full length FT CDS. N-terminus is similar to the N-terminal region of FT Agrobacterium tumefaciens AGR_L_563p TR:AAK88851 FT (EMBL:AE008228) (228 aa) fasta scores: E(): 9.4e-05, 38.15% FT id in 76 aa. Also similar to BP3497, 40.385% identity FT (41.584% ungapped) in 208 aa overlap." FT /db_xref="UniProtKB/TrEMBL:Q7VTM4" FT /protein_id="CAE43760.1" FT /translation="MTKALLLAMMTPPGDLEEEFNEWYDTEHFPRLSTVPGFDRSSRYV FT AVKGWPKYVALYDLASVDALEHPQYTRAPGARFSPWAQRILTKLHGQYRFSGDQIYPGP FT ALMGDRGRPLQVAVMRFREMPGAHEVALIEGLQAIVDSSEDLLQARVFRGSGPLQGDYI FT ALVECRAHDPRIPVTASALGPAADHLDLMTFYIPYWRRGYVPSVFEAQ" FT CDS complement(231733..233442) FT /transl_table=11 FT /locus_tag="BP3500" FT /product="putative dehydrogenase" FT /note="Similar to Comamonas testosteroni 3-oxosteroid FT 1-dehydrogenase SW:3O1D_COMTE (Q06401) (573 aa) fasta FT scores: E(): 6.6e-37, 30.82% id in 584 aa, and to FT Pseudomonas aeruginosa hypothetical protein PA2243 FT TR:Q9I1M6 (EMBL:AE004650) (577 aa) fasta scores: E(): FT 8.4e-64, 37.32% id in 568 aa" FT /db_xref="GOA:Q7VTM3" FT /db_xref="InterPro:IPR000103" FT /db_xref="InterPro:IPR003953" FT /db_xref="UniProtKB/TrEMBL:Q7VTM3" FT /protein_id="CAE43761.1" FT /translation="MSPVVSEASPERWDDETDVLVIGSGAGGLSAALFAAQAGLRVLIC FT EKLAYVGGTTATSGGGIWVPGTKAGLAAGDTLEAARTYLKALLGDFYQEEVIDTYLATG FT GKVIDFLNENTEVKFDLSSWPDYRSSLPGGATRGRSLFPQPFDGKKLGRNFSLLHPPLH FT RLMVLGGLMLGPEEVHDFLRPFSSPRALMRVLRKLLRYGMDRIRYARGTDLRSGNALAA FT RLLYSVDKLGCRILTQADLESLAIDHDRVIGATVVVGGVPKRIRASKAVLLATGGFAHN FT QEMLRRYGPATPHRFSLCNPACTGAGIQAALDAGASVDRELSSVGFWTPASASREKNGA FT DTPVIYGYLDRGRPGVIAVNEQGERFVNEANSYHDIVTAIFANGGADGKPFYFITDREF FT VRRHGLGLIRPWPWNRSLRPWIRRGYITVASTLDKLGPKIGIDPGALAAAVQRHNQSAR FT TGQDPDFHKGASAYNRMFGHNMTWPNPNLAPIETPPFVALRIHPATIGTAMGLKTSASG FT QALNAAGQPISGLYACGNNQASPFRGFYPGGGSTLGPAIVGAYLAVQSLSKP" FT misc_feature complement(232204..232236) FT /note="ScanRegExp hit to PS00133, Zinc carboxypeptidases, FT zinc-binding region 2 signature." FT CDS complement(233504..234454) FT /transl_table=11 FT /locus_tag="BP3501" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT SMA1927 TR:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: FT E(): 5e-38, 39.22% id in 311 aa, and to Comamonas FT testosteroni hypothetical protein OrfJ TR:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 1.3e-35, 36.67% FT id in 319 aa" FT /db_xref="GOA:Q7VTM2" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VTM2" FT /protein_id="CAE43762.1" FT /translation="MIKLMLAGLAALMPMLSMASDYPSKPVTLIAGFAAGGPTDVMARA FT FAQQLAAELGVPIVVENRPGADSLLASQAVRNAKPDGYTIYLASSAHAINPSLFKDAKF FT KVRDDFTPISTIGEVPNVVAIPTDLPARTLKEFIDYAKARDGQLNYATTASITYLQTAL FT MLKSAGLNLQRIPYKGAAPAAVALMSGDVQFMMSGIGPMVPQIQSQKIRALAVTSAKRS FT ALLPDLPTAIEAGLPGFTSTVWYALLAPANVPPDIVKCLNESTRAALQNPDLIAKLTAQ FT GVEQRGSSPEELSQFLAAEEAKWMATVDELGARQQ" FT misc_feature complement(234398..234454) FT /note="Signal peptide predicted for BP3501 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.990 between residues 19 and 20" FT CDS complement(235060..236073) FT /transl_table=11 FT /locus_tag="BP3503" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Caulobacter crescentus isoleucine FT biosynthesis transcriptional activator IlvR SW:ILVR_CAUCR FT (P52670) (296 aa) fasta scores: E(): 1.8e-12, 27.45% id in FT 244 aa, and to Neisseria meningitidis putative LysR-family FT transcriptional regulator NMA1437 TR:Q9JRJ3 (EMBL:AL162755) FT (304 aa) fasta scores: E(): 4.1e-16, 27.81% id in 284 aa" FT /db_xref="GOA:Q7VTM1" FT /db_xref="InterPro:IPR000847" FT /db_xref="InterPro:IPR005119" FT /db_xref=" |