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EBI DbfetchID BX640420; SV 1; linear; genomic DNA; STD; PRO; 348134 BP. XX AC BX640420; XX DT 09-AUG-2003 (Rel. 76, Created) DT 23-OCT-2008 (Rel. 97, Last updated, Version 7) XX DE Bordetella pertussis strain Tohama I, complete genome; segment 10/12 XX KW complete genome. XX OS Bordetella pertussis OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Bordetella. XX RN [2] RP 1-348134 RA Sebaihia M.; RT ; RL Submitted (06-AUG-2003) to the EMBL/GenBank/DDBJ databases. RL Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute, RL Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail: RL ms5@sanger.ac.uk XX RN [3] RA Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E., RA Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., RA Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A., RA Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I., RA Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., RA Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., RA Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., RA Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., RA Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., RA Barrell B.G., Maskell D.J.; RT "Comparative analysis of the genome sequences of Bordetella pertussis, RT Bordetella parapertussis and Bordetella bronchiseptica"; RL Nat. Genet. 35(1):0-0(2003). XX DR EMBL-CON; BX470248. DR RFAM; RF01118; PK-G12rRNA. DR SILVA-LSU; BX640420. DR SILVA-SSU; BX640420. XX FH Key Location/Qualifiers FH FT source 1..348134 FT /organism="Bordetella pertussis" FT /strain="Tohama I" FT /mol_type="genomic DNA" FT /db_xref="taxon:520" FT CDS 57..968 FT /transl_table=11 FT /locus_tag="BP2942" FT /product="putative LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa1826 TR:Q9I2R9 (EMBL:AE004609) FT (301 aa) fasta scores: E(): 5.4e-29, 39% id in 300 aa and FT to Bacillus subtilis Als operon regulatory protein AlsR FT SW:ALSR_BACSU (Q04778) (302 aa) fasta scores: E(): 3.4e-25, FT 34% id in 250 aa" FT /db_xref="GOA:Q7VUX4" FT /db_xref="HSSP:1IXC" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VUX4" FT /protein_id="CAE43214.1" FT /translation="MDLRQLQQFVVLSETLNFHRAAERLHMAQPPLSTAIRKLEDELGI FT VLFDRKPRSLSLTVAGAAMLKHARRTLSNVDELQRCAREYVSGDQGRIVVGFSNTASNA FT VLPRILHSFQARYPRVELVLHESTTHELVSELAAHTVDVALLRTPLFDACDAELIDLEQ FT DHFILAVPADHPLAQQSCARLADLDGQRFIAFSREKVPAMHAIISLAFGEAGVTPKVVQ FT QIVQVPTAIALAESGIGMALVPSAAARYLRTGARLLPVVDLPASLRIGIALGYDAQTAS FT AATLRFVENTRAAHAAAPSPPA" FT misc_feature 63..491 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 102..167 FT /note="Predicted helix-turn-helix motif with score 1177 FT (+3.20 SD) at aa 16-37, sequence LNFHRAAERLHMAQPPLSTAIR" FT misc_feature 105..197 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS complement(992..1981) FT /transl_table=11 FT /locus_tag="BP2943" FT /product="putative exported protein" FT /note="Similar to several proteins of undefined function FT e.g. Comamonas testosteroni OrfJ protein TR:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 8.5e-43, 42.02% FT id in 326 aa and to Rhizobium meliloti hypothetical protein FT Sma1927 TR:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: FT E(): 5e-40, 38.58% id in 324 aa" FT /db_xref="GOA:Q7VUX3" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VUX3" FT /protein_id="CAE43215.1" FT /translation="MNSNRRRMLTAMAGMAGMTAFPFAHGSAGAWPERPIRLILPYAAS FT GPTDVVARRIAARLAERLGQQFIVENKPGAGGNIASEFVAKSAADGYTALYHSSGIAIA FT PALYSKMGYDPARDLAAVAMPASIPAIIIAGPALPASVTTPAQFVQYLKDNPGKLSYGS FT GGVGNITHLAVELMLQETGTQATHVPYKGTAPAMVDLIGGRVHFMLDALSTALPAIREG FT RARAIAVTSPQRAAVLPDVPTLAETVIPKFAATTWHGVFVPASTPAAVVARLNAEINLV FT VQEPELARQFAEQAVELHASTPAAFSAFLGEEIARWGTAARDAGVQPA" FT misc_feature complement(1892..1981) FT /note="Signal peptide predicted for BP2943 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.443 between residues 26 and 27" FT CDS complement(2006..2473) FT /transl_table=11 FT /locus_tag="BP2944" FT /product="conserved hypothetical protein" FT /note="Weakly similar to Sulfolobus tokodaii hypothetical FT protein St0068 TR:BAB65025 (EMBL:AP000981) (165 aa) fasta FT scores: E(): 4.8e-09, 30.87% id in 149 aa and to FT Rhodococcus sp NCIMB 9784 FAD-binding protein CampD FT TR:AAK50623 (EMBL:AF323755) (167 aa) fasta scores: E(): FT 1.2e-07, 32.41% id in 145 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VUX2" FT /protein_id="CAE43216.1" FT /translation="MTLLDTEVRIYWEDLELGTRFGTRKRTVTETDLVNFVNLTWLTEE FT LFSNGEPADRAHMGITGRVVPGGLVYVFAEGLVAPSFQAAGIAFLNAELDIKGPTFVGD FT TLHVECEVVQRRMTSRPGRGLVRTRNTVVNQHGEPVLAYTPLRMMRTRQIP" FT CDS complement(2487..2948) FT /pseudo FT /transl_table=11 FT /locus_tag="BP2945" FT /product="hypothetical protein (pseudogene)" FT /note="Pseudogene. This CDS has an in-frame internal FT deletion relative to its B. parapertussis and B. FT bronchiseptica orthologues (putative acyl FT CoA-dehydrogenase). In the absence of experimental FT evidence, it is difficult to speculate on the function of FT this protein. Similar to the N-terminus of several acyl-coA FT dehydrogenases: Caulobacter crescentus acyl-coA FT dehydrogenase family protein Cc2328 TR:Q9A5W9 FT (EMBL:AE005903) (387 aa) fasta scores: E(): 7.7e-24, 50.69% FT id in 144 aa and to Archaeoglobus fulgidus acyl-coA FT dehydrogenase Af0964 TR:O29298 (EMBL:AE001038) (394 aa) FT fasta scores: E(): 1.3e-13, 39.16% id in 120 aa" FT /db_xref="PSEUDO:CAE43217.1" FT misc_feature complement(2592..2861) FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT CDS 3160..3867 FT /transl_table=11 FT /locus_tag="BP2946" FT /product="putative arsR-family transcriptional regulator" FT /note="Similar to several putative transcriptional FT regulators including: Pseudomonas aeruginosa probable FT transcriptional regulator Pa0279 TR:Q9I6L1 (EMBL:AE004466) FT (232 aa) fasta scores: E(): 4.6e-34, 46.94% id in 213 aa FT and to Caulobacter crescentus transcriptional regulator FT Cc3070 TR:Q9A3Y1 (EMBL:AE005970) (234 aa) fasta scores: FT E(): 9e-28, 43.98% id in 216 aa" FT /db_xref="GOA:Q7VUX1" FT /db_xref="InterPro:IPR001845" FT /db_xref="UniProtKB/TrEMBL:Q7VUX1" FT /protein_id="CAE43218.1" FT /translation="MDADHADARLAAVAAAIADPARARMLCSLLDGCARTATELAALAD FT IGASSASAHFAHLRAQGLVELAVQGKHRYYQLADADVAQALEALLVVAGVPRVPFKPAT FT PGPLCHARTCYDHMAGTVAVRLHDAMLAQRWLQPDGRDYRVTPAGAAALTSLGLDLGAI FT GRQRRRHAYPCLDWSARRPHLGGALGAALLQCCLQHGWVEQQLDSRALRVTAQGERRFD FT AWCRPRGRLADAA" FT misc_feature 3199..3435 FT /note="HMMPfam hit to PF01022, Bacterial regulatory FT protein, arsR family" FT misc_feature 3262..3327 FT /note="Predicted helix-turn-helix motif with score 1133 FT (+3.05 SD) at aa 35-56, sequence RTATELAALADIGASSASAHFA" FT repeat_region 3885..3916 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 3885..4937 FT CDS 3987..4937 FT /transl_table=11 FT /locus_tag="BP2947" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTB4" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTB4" FT /protein_id="CAE43219.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI" FT misc_feature 4245..4310 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 4368..4901 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(4906..4937) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(5083..6243) FT /transl_table=11 FT /locus_tag="BP2948" FT /product="riboflavin biosynthesis protein ribd [includes: FT diaminohydroxyphosphoribosylaminopyrimidine deaminase" FT /product="putative riboflavin-specific deaminase" FT /note="Similar to Escherichia coli riboflavin biosynthesis FT protein (diamino hydroxyphospho ribosylaminopyrimidine FT deaminase) RibD or RibG or b0414 SW:RIBD_ECOLI (P25539) FT (367 aa) fasta scores: E(): 1.6e-50, 46.46% id in 368 aa FT and to Xylella fastidiosa riboflavin-specific deaminase FT Xf0950 TR:Q9PES8 (EMBL:AE003934) (364 aa) fasta scores: FT E(): 1.1e-53, 48.77% id in 367 aa" FT /db_xref="GOA:Q7VUX0" FT /db_xref="InterPro:IPR011549" FT /db_xref="UniProtKB/TrEMBL:Q7VUX0" FT /protein_id="CAE43220.1" FT /translation="MNTSTPTDDVSWIRRALALARSVMYSTAPNPRVGCVIVRDGQVLG FT EGATQPPGGPHAEVCALREAAARGASLAGATVYVTLEPCSHFGRTPPCVDALVAAAPAR FT VVVAMGDPNPRVNGQGLARLRAAGIAVTEDVCRDEALELNAGFAARMSRGLPWVWLKLA FT TSLDGRSALHNGVSQWITGEAARADGHHWRARSGVVLTGMGTVLKDDPQLNARAVQTSH FT PPRKAVIDGRFEIPEDARLFDDGAQVLIFTARSDAAKARRMADRNARVIELPGVRPDRV FT DLPAVMRWLASQEINEVHVEAGAGLSGALLAEDCVDELLVYLAPVLLGDAAGMVRLPLL FT EHLDGARRFEFAELAPVGTDVRLRARVASRWRALQDSVSAASRQRG" FT misc_feature complement(5185..5775) FT /note="HMMPfam hit to PF01872, RibD C-terminal domain" FT misc_feature complement(5929..6168) FT /note="HMMPfam hit to PF00383, Cytidine and deoxycytidylate FT deaminase zinc-binding region" FT misc_feature complement(5953..6078) FT /note="ScanRegExp hit to PS00903, Cytidine and FT deoxycytidylate deaminases zinc-binding region signature." FT CDS 6332..6976 FT /transl_table=11 FT /locus_tag="BP2949" FT /product="hypothetical protein" FT /note="Similar in parts to several including: Agrobacterium FT tumefaciens TR:AAK86081 (EMBL:AE007965) (239 aa) fasta FT scores: E(): 1.6e-18, 50.82% id in 183 aa and to FT Pseudomonas aeruginosa hypothetical protein Pa1677TR:Q9I348 FT (EMBL:AE004595) (198 aa) fasta scores: E(): 1.9e-07, 30.47% FT id in 210 aa" FT /db_xref="GOA:Q7VUW9" FT /db_xref="InterPro:IPR000868" FT /db_xref="UniProtKB/TrEMBL:Q7VUW9" FT /protein_id="CAE43221.1" FT /translation="MAVLARPRPGAQNSASATPKPLPRSLAMKQALIVIDVQESFRHRP FT FWDDSELPAFLAQVQALIDGCRQRDIPVLQVFHVNAANDPASPFAPASGHVVALRELRI FT APTAVFRKTVHSSLYARDEAGHTLHDWLLEHGVGEIIVCGIRTEQCCETTTRHASDAGF FT KVRFALDATLTFAMRAASGKTYTPAEIRERTELVLQDRFAQVLPAAAALAA" FT misc_feature 6422..6895 FT /note="HMMPfam hit to PF00857, Isochorismatase family" FT CDS join(6989..7537,7551..7958) FT /pseudo FT /transl_table=11 FT /locus_tag="BP2950" FT /product="putative AraC-family transcriptional regulator FT (pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 183. The frameshift occurs within FT a dimeric tract of (CGGGCCGCGCGTG)2. The sequence has been FT checked and believed to be correct. Similar to many FT including: Streptomyces coelicolor AraC family FT transcriptional regulator Scf76.06 TR:Q9RJG8 FT (EMBL:AL121600) (327 aa) fasta scores: E(): 3.6e-27, 37.33% FT id in 308 aa and to Pseudomonas aeruginosa probable FT transcriptional regulator Pa1850 TR:Q9I2P5 (EMBL:AE004611) FT (334 aa) fasta scores: E(): 3.2e-20, 35.35% id in 314 aa. FT This CDS contains a frameshift mutation following codon FT 183." FT /db_xref="PSEUDO:CAE43222.1" FT variation 7525..7550 FT /note="(CGGGCCGCGCGTG)2 in pertussis; (CGGGCCGCGCGTG)1 in FT parapertussis and bronchiseptica" FT misc_feature 7695..7955 FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family" FT CDS complement(7971..8453) FT /transl_table=11 FT /locus_tag="BP2951" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4057 SW:Y4F7_PSEAE (Q9HWX1) (154 aa) fasta FT scores: E(): 4.9e-29, 52.38% id in 147 aa and to Vibrio FT cholerae hypothetical protein Vc2272 SW:YM72_VIBCH (Q9KPU0) FT (149 aa) fasta scores: E(): 6.4e-29, 54.73% id in 148 aa" FT /db_xref="GOA:Q7VUW8" FT /db_xref="InterPro:IPR003796" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUW8" FT /protein_id="CAE43223.1" FT /translation="MRCPFCGNADTQVVDSRVSEEGDTIRRRRRCLSCDKRFTTYERVE FT LAMPSVVKRDGSRTEYDAGKVRGSLSLALRKRPVSTDEVDSAVARIEETLLASGMREVP FT SEQIGELVMGELKRLDKVAYVRYASVYKSFEDIGEFVEAIREMQGPLLPGKKLRKD" FT misc_feature complement(8007..8453) FT /note="HMMPfam hit to PF02644, Uncharacterized BCR, FT COG1327" FT CDS complement(8611..9858) FT /transl_table=11 FT /gene="glyA" FT /locus_tag="BP2952" FT /product="serine hydroxymethyltransferase" FT /EC_number="2.1.2.1" FT /note="Similar to Escherichia coli serine FT hydroxymethyltransferase GlyA or b2551 SW:GLYA_ECOLI FT (P00477) (417 aa) fasta scores: E(): 6.8e-102, 63.7% id in FT 416 aa and to Neisseria meningitidis serine FT hydroxymethyltransferase GlyA or Nma1254 SW:GLYA_NEIMA FT (Q9XAY7) (416 aa) fasta scores: E(): 6.5e-116, 73.97% id in FT 415 aa" FT /db_xref="GOA:Q7VUW7" FT /db_xref="InterPro:IPR019798" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUW7" FT /protein_id="CAE43224.1" FT /translation="MFNRNLTLDQVDPDVWAAIQKEDVRQEQHIELIASENYASPAVMQ FT AQGTQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRLKQIFGAEAANVQPNSGSQANQG FT VYMAVLKPGDTVLGMSLAEGGHLTHGASVNASGKLYNFVPYGLDADEVLDYAQVERLTK FT EHKPKLIVAGASAYALHIDFERMARIAHDNGALFMVDIAHYAGLVAGGAYPNPVPHADF FT VTSTTHKSLRGPRGGVIMMKAEFEKAVNSAIFPGIQGGPLMHVIAAKAVAFKEALSPEF FT QDYAQQVVKNAKVLADTLVKRGLRIVSGRTESHVMLVDLRPKGITGKEAEAVLGQAHIT FT VNKNAIPNDPEKPFVTSGIRLGTPAMTTRGFKEAEAELTANLIADVLDNPRDEANIAAV FT RARVNELTARLPVYGN" FT misc_feature complement(8710..9837) FT /note="HMMPfam hit to PF00464, Serine FT hydroxymethyltransferase" FT misc_feature complement(9148..9198) FT /note="ScanRegExp hit to PS00096, Serine FT hydroxymethyltransferase pyridoxal-phosphate attachment FT site. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(10079..10735) FT /transl_table=11 FT /locus_tag="BP2953" FT /product="conserved hypothetical protein" FT /note="Similar to Thauera aromatica ypothetical protein FT BbsI TR:Q9KJE6 (EMBL:AF173961) (209 aa) fasta scores: E(): FT 2.9e-49, 58.04% id in 205 aa and to Xylella fastidiosa FT hypothetical protein Xf2170 TR:Q9PBH4 (EMBL:AE004031) (204 FT aa) fasta scores: E(): 7.3e-40, 50.24% id in 205 aa" FT /db_xref="HSSP:1VI3" FT /db_xref="InterPro:IPR005247" FT /db_xref="UniProtKB/TrEMBL:Q7VUW6" FT /protein_id="CAE43225.1" FT /translation="MNLSSLSFSDNESIPERYAFGRIDAQSHVALADNFNPQFSWDDVP FT DGTQSFALICHDPDVPSQPDDVNQEGRTVPADLPRVDFFHWVLVDLAADMREIQEGAFS FT DGITPRGKGGPLAPNNARQGVNDYTGWFAADRDMNGDYFGYDGPCPPWNDERVHHYVFT FT LYALDVPSLNLQGSFTGLDALKAMQGHVLAQASLTGTYTLNPDLAPRQIGATTSS" FT CDS complement(10771..12000) FT /transl_table=11 FT /gene="tyrS" FT /locus_tag="BP2954" FT /product="tyrosyl-tRNA synthetase" FT /EC_number="6.1.1.1" FT /note="Similar to Haemophilus influenzae tyrosyl-tRNA FT synthetase TyrS or Hi1610 SW:SYY_HAEIN (P43836) (401 aa) FT fasta scores: E(): 1.7e-96, 60.7% id in 397 aa and to FT Bacillus halodurans tyrosyl-tRNA synthetase TyrZ or Bh3228 FT TR:Q9K7X9 (EMBL:AP001518) (412 aa) fasta scores: E(): FT 2.9e-78, 51.11% id in 405 aa" FT /db_xref="GOA:Q7VUW5" FT /db_xref="HSSP:1H3F" FT /db_xref="InterPro:IPR002307" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUW5" FT /protein_id="CAE43226.1" FT /translation="MSHPEAPITPEVEADLAIARRGCDELLVESEFARKLARSRATGVP FT LRIKLGLDPTAPDIHLGHTVVLNKMRQLQDLGHNVIFLIGDFTSTIGDPSGRNSTRPPL FT TREQIETNAKTYYAQASLVLDPARTEIRYNSEWCDPLGARGMIQLASRYTVARMMERED FT FTRRFKGGVPIAVHEFLYPLLQGYDSVALKADLELGGTDQKFNLLVGRELQKEYGQEQQ FT CILTMPLLVGTDGVEKMSKSKGNYIGISEAPESMFGKLMSISDTLMWRYYELLSFRSLA FT DIAALKAEIDGGRNPRDAKVALAQEIVARFHSPQAAEAALAAFEARFRDGAIPEDMPEV FT TVGGAPQGILRILREAGLVASGSEAQRNVEQGGVRVNGDRVEDKSLQLSAGTYVVQVGK FT RKFARVKLVG" FT misc_feature complement(11203..11859) FT /note="HMMPfam hit to PF00579, tRNA synthetases class I (W FT and Y)" FT misc_feature complement(11809..11841) FT /note="ScanRegExp hit to PS00178, Aminoacyl-transfer RNA FT synthetases class-I signature. Confirmed by InterPro eMOTIF FT pattern match." FT repeat_region 12166..12197 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 12166..13218 FT CDS 12268..13218 FT /transl_table=11 FT /locus_tag="BP2955" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE43227.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 12526..12591 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 12649..13182 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(13187..13218) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 13310..14725 FT /transl_table=11 FT /locus_tag="BP2956" FT /product="hypothetical protein" FT /note="Weakly similar to several including: Pseudomonas FT aeruginosa hypothetical protein Pa0667 TR:Q9I5Q4 FT (EMBL:AE004501) (447 aa) fasta scores: E(): 5.2e-42, 39.83% FT id in 369 aa and to Neisseria meningitidis hypothetical FT protein Nmb0315 TR:Q9K163 (EMBL:AE002388) (430 aa) fasta FT scores: E(): 2.4e-35, 32.8% id in 445 aa" FT /db_xref="GOA:Q7VUW4" FT /db_xref="InterPro:IPR016047" FT /db_xref="UniProtKB/TrEMBL:Q7VUW4" FT /protein_id="CAE43228.1" FT /translation="MNRGPNSLVRSFKRKVAALFAPPVEPTSRGGALLRRTLTVSALGL FT FAGAAALGMVQQPDRSELPPLRLIDSVLPLEAGQMQVSDASNAPYISETRIRAGDTLAA FT VLQRLDIDSPRLQNFLTHDASARSIYKLYPGRSVQAATNENGDLVWLRYIHTPGNESGG FT QVVTRLLHVAPDGANGYKAEEVTQGTEQQTRVAVGTIRSSLFGATDAAGIPDSVTMQMA FT DILSSKIDFLRDLRQGDQFRVVYEVRTHEGRYAGAGRVQALEFINGDKTYNAVWFSPDG FT KSGSYYDFDGTSLRGAFLRTALKFSRISSTFGMRMHPIHKTWTGHKGVDYAAPTGTPIH FT ATADGTVEFAGWQNGYGNVVIIKHHGKYSTLYAHQSRIASGLKKGQKIAQGELVGYVGS FT TGWATGPHLHYEFRVNNQPIDPLAVDLPVARKLEPAELRAFTQAVQPYKQQIKLLTEFQ FT QTLPEGSATVASR" FT misc_feature 14327..14581 FT /note="HMMPfam hit to PF01551, Peptidase family M23/M37" FT CDS 14731..15867 FT /transl_table=11 FT /locus_tag="BP2957" FT /product="conserved hypothetical protein" FT /note="Weakly similar to several including: Pseudomonas FT aeruginosa hypothetical protein Pa0666 TR:Q9I5Q5 FT (EMBL:AE004501) (363 aa) fasta scores: E(): 6.6e-65, 53.02% FT id in 364 aa, and to Xylella fastidiosa hypothetical FT protein Xf0166 TR:Q9PGY0 (EMBL:AE003870) (381 aa) fasta FT scores: E(): 1e-55, 48.16% id in 382 aa" FT /db_xref="GOA:Q7VUW3" FT /db_xref="InterPro:IPR005338" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUW3" FT /protein_id="CAE43229.1" FT /translation="MDSTTHGPRTHVPGRLFIGLMSGTSMDGADGVLVRLDGPRPEVLA FT SASLPMPAALRDELFALNHAGANELERAALAANGLARLYARAVRQLLDQAGLQPGDVAA FT IGAHGQTVRHRPDLGYTLQLNAPALLAELAGIDVVADFRSRDVAAGGQGAPLVPPFHAA FT LFAGGQARAVLNLGGIANVTLLEPGRPPRGFDTGPANVLLDAWCQRHTGQPYDADGRFA FT AQGQVLADLLEHLIASEPWFALAPPKSTGRDLFNLDWLLARLQAFDGPAPQPQDVQATL FT QRLTARTVANAIDASAAAPRDVLVCGGGARNPGLMRELAYCLQRPVRPTDDAGVPAQWV FT EALAFAWLAQACLDRIPAGLPTVTGARAARVLGALYPA" FT CDS complement(15937..16308) FT /transl_table=11 FT /locus_tag="BP2958" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis (serogroup A) FT hypothetical protein Nma0739 TR:Q9JQU7 (EMBL:AL162754) (112 FT aa) fasta scores: E(): 7.2e-32, 76.63% id in 107 aa, FT Pseudomonas aeruginosa hypothetical protein Pa0665 FT TR:Q9I5Q6 (EMBL:AE004501) (116 aa) fasta scores: E(): FT 3e-31, 72.47% id in 109 aa and to Caulobacter crescentus FT hesb/yadr/yfhf family protein Cc2009 TR:Q9A6S4 FT (EMBL:AE005874) (110 aa) fasta scores: E(): 2.1e-16, 48.14% FT id in 108 aa. Also similar to BP1801, 39.623% identity FT (40.000% ungapped) in 106 aa overlap." FT /db_xref="GOA:Q7VUW2" FT /db_xref="HSSP:1R94" FT /db_xref="InterPro:IPR017870" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUW2" FT /protein_id="CAE43230.1" FT /translation="MNAVTETVDLQAPPPVPLVFTDSAAAKVKDLLAEEGNPELKLRVF FT VQGGGCSGFQYGFTFDEVVNDDDTVLDKAGVQLLVDPMSFQYLVGAEIDYKEDLEGAQF FT VIRNPNASTTCGCGSSFSV" FT misc_feature complement(15943..16260) FT /note="HMMPfam hit to PF01521, HesB-like domain" FT misc_feature complement(15946..15999) FT /note="ScanRegExp hit to PS01152, Hypothetical FT hesB/yadR/yfhF family signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS complement(16396..17142) FT /transl_table=11 FT /locus_tag="BP2959" FT /product="putative integral membrane protein" FT /note="Weakly similar in parts to Pseudomonas aeruginosa FT hypothetical protein Pa0663 TR:Q9I5Q8 (EMBL:AE004501) (239 FT aa) fasta scores: E(): 9.1e-06, 28.82% id in 222 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VUW1" FT /protein_id="CAE43231.1" FT /translation="MPDDSASVQPRAPVARPQGRARAWLALAAGLVVGAVAGWRYGLAH FT QGPDDAVVLTRQQVAAQEAAMQQREAEARFLRAQLDTADGEIAVERAARTELETQLQSA FT QSEVGRVRDQLAFYEQLLPPGPAGSVDIRGVAFEREGQGLRYKVLLMRSGRGETPFSGA FT LRFQATGTLKGETVTRDLEPLTVKAEGGGATVPEAGASLLALQFDQYQRSQGLLDLPDG FT FVPETVTVSVLEDTTVRATRTVKLEF" FT misc_feature complement(17014..17079) FT /note="1 probable transmembrane helix predicted for BP2959 FT by TMHMM2.0 at aa 21-43" FT CDS complement(17179..18243) FT /transl_table=11 FT /gene="argC" FT /locus_tag="BP2960" FT /product="N-acetyl-gamma-glutamyl-phosphate reductase" FT /EC_number="1.2.1.38" FT /note="Similar to many proteins involved in arginine FT biosynthesis including: Bacillus subtilis FT N-acetyl-gamma-glutamyl-phosphate reductase ArgC FT SW:ARGC_BACSU (P23715) (346 aa) fasta scores: E(): 7.3e-49, FT 43.1% id in 348 aa and to Pseudomonas aeruginosa FT N-acetyl-gamma-glutamyl-phosphate reductase argc or pa0662 FT TR:Q9I5Q9 (EMBL:AE004501) (344 aa) fasta scores: E(): FT 3.8e-83, 65.7% id in 347 aa" FT /db_xref="GOA:Q7VUW0" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUW0" FT /protein_id="CAE43232.1" FT /translation="MAQASNSRIKVGIVGGTGYTGVELLRLLSQHPHVELTAITSRKED FT GLPVADMYPNLRGRVKLAFSAPEKASLTDCDVVFFATPHGVAMAQAAELLAAGTRVIDL FT AADFRLQDTAVFERWYKIPHTCPDILADSVYGLVELNREAISKARVIGNPGCYPTTVLL FT GLAPLIEGGKQLVDVQTLIADCKSGVSGAGRKAEVGSLFSEASDNFKAYGVAGHRHQPE FT IVAQLEKLAGGKVGLTFVPHLVPMIRGMFSTLYARILPQARDTDFQALFEARYADEPFV FT DVMPAGSLPETRSVRASNNLRISVQRPGGGDQLVILVVQDNLVKGASGQAVQNMNLMFG FT LPESAGLDQVAILP" FT misc_feature complement(17224..18219) FT /note="HMMPfam hit to PF01118, Semialdehyde dehydrogenase, FT NAD binding domain" FT CDS complement(18432..18824) FT /transl_table=11 FT /gene="rpsI" FT /locus_tag="BP2961" FT /product="30s ribosomal protein S9" FT /note="Similar to Escherichia coli 30s ribosomal protein S9 FT RpsI or b3230 or z4588 or Ecs4103 SW:RS9_ECOLI (P02363) FT (129 aa) fasta scores: E(): 3.5e-30, 65.35% id in 127 aa FT and to Neisseria meningitidis (serogroup A) 30s ribosomal FT protein S9 RpsI or Nma0379 or Nmb2056 TR:Q9JQZ9 FT (EMBL:AL162753) (130 aa) fasta scores: E(): 8.7e-38, 80.76% FT id in 130 aa" FT /db_xref="GOA:Q7VUV9" FT /db_xref="InterPro:IPR000754" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUV9" FT /protein_id="CAE43233.1" FT /translation="MIGNWNYGTGRRKTSVARVFIKKGSGKIVVNGKPVDEFFARETGR FT MIVHQPLELTGHLESFDIKVNVHGGGETGQAGAVRHGITRALIDYDAALKPALSQAGFV FT TRDAREVERKKVGFRKARRRKQFSKR" FT misc_feature complement(18435..18797) FT /note="HMMPfam hit to PF00380, Ribosomal protein S9/S16" FT misc_feature complement(18564..18620) FT /note="ScanRegExp hit to PS00360, Ribosomal protein S9 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(18834..19262) FT /transl_table=11 FT /gene="rplM" FT /locus_tag="BP2962" FT /product="50s ribosomal protein L13" FT /note="Similar to Escherichia coli 50s ribosomal protein FT L13 RplM or b3231 or z4589 or Ecs4104 SW:RL13_ECOLI FT (P02410) (142 aa) fasta scores: E(): 8.7e-36, 65.24% id in FT 141 aa and to Neisseria meningitidis (serogroup A), and 50s FT ribosomal protein l13 RplM or Nma0378 or Nmb2057 TR:Q9JQM8 FT (EMBL:AL162753) (143 aa) fasta scores: E(): 2e-43, 76.76% FT id in 142 aa" FT /db_xref="GOA:Q7VUV8" FT /db_xref="HSSP:1J3A" FT /db_xref="InterPro:IPR005823" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUV8" FT /protein_id="CAE43234.1" FT /translation="MKTFVAKPHEVKRDWFVIDAKGKVLGRVASEVAHRLRGKHKPEFT FT PHVDTGDYIVIINAADIVVTGNKAQDKKYFRHTTYPGGIRETNFEKMQQRFPGRAIQKA FT VKGMLPKGPLGYAMIKKLKVYAGAEHPHTAQQPKPLEF" FT misc_feature complement(18837..19220) FT /note="HMMPfam hit to PF00572, Ribosomal protein L13" FT CDS complement(19558..20655) FT /transl_table=11 FT /locus_tag="BP2963" FT /product="putative exported solute binding protein" FT /note="Similar to many proposed extracellular solute FT binding proteins including: Rhodobacter sphaeroides FT periplasmic mannitol-binding protein SmoM TR:O30835 FT (EMBL:AF018073) (365 aa) fasta scores: E(): 1.4e-78, 52.87% FT id in 365 aa and to Rhodobacter capsulatus FT C4-dicarboxylate-binding periplasmic protein precursor DctP FT SW:DCTP_RHOCA (P37735) (333 aa) fasta scores: E(): 9.7e-05, FT 21.53% id in 325 aa" FT /db_xref="GOA:Q7VUV7" FT /db_xref="InterPro:IPR018389" FT /db_xref="UniProtKB/TrEMBL:Q7VUV7" FT /protein_id="CAE43235.1" FT /translation="MQRRSFLKHAGLGAVAGSAAVAAPVFAQDAPTLNWRMASSFPRSL FT DTLFGTGEIFVKFVSEATGGKFNIRQFPGGEIVPALQVMDAVSNNTIECGHTVSYYYYG FT KDPAYCFDSAVPFGLNARQMNAWMFDGDGMKLTREMFKPLKIVNFPMGNTGVQMGGWYR FT KEIKSPEDLKGLKMRTAGFAGEVLSRMGVVPQQLAGGDVYPSLEKGTLDAVEFVGPYDD FT EKLGFNKVAKYYYYPGWWEGGPQVSLYLNEGAWEGLPKSYQAIVEAASRVAHVAMTSRY FT DALNPPALRKLIAGGAELRAFPRSVMDASYEAALTVYKEFSDKDPKFKAIYENYMGFRD FT SVVPWFRLAEGSYDQYLGVAMAGRK" FT misc_feature complement(20575..20655) FT /note="Signal peptide predicted for BP2963 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 27 and 28" FT CDS complement(20997..22361) FT /transl_table=11 FT /locus_tag="BP2964" FT /product="conserved hypothetical protein" FT /note="Similar to several proteins of the PmbA/TldD family FT including: Pseudomonas aeruginosa PmbA protein TR:Q9HVU9 FT (EMBL:AE004861) (449 aa) fasta scores: E(): 1e-82, 52.86% FT id in 437 aa, and to Escherichia coli PmbA protein thought FT to be involved with secretion and maturation of microcin FT B17 (TldE or b4235 or z5845 or Ecs5212) SW:PMBA_ECOLI FT (P24231) (450 aa) fasta scores: E(): 2.7e-77, 49.66% id in FT 445 aa" FT /db_xref="InterPro:IPR002510" FT /db_xref="UniProtKB/TrEMBL:Q7VUV6" FT /protein_id="CAE43236.1" FT /translation="MVNSSNSLPIAANHARFSELVEQVLAYARQAGASDAAAEVSESLG FT LSVSVRKNDIETVEQTRDRSLDLTVYAGQSRGSASTSDFSEQALRETVEAAWHIARHTA FT ADPAAGLPDADLLATEFPDLGLHYPWPVTTEEAAELALRAERAARDVDARITNTDGASV FT ASYEGQFVMGNTRGFLGGYPYSRHSLSVAPIAGRGNNMQRDYWYTSDRNPNRLAAPEVV FT GRYAAERTLSRLSARRLRTGKFPVLFEAPLALGLLGAFTQAANGGALYRKATFLVDALG FT KPIFADHIDVSENPHIPGAMGSSPFDDEGVRTRARSVVSAGVLEGYFLSSYTARKLGMA FT TTGNAGGSHNLTLSSRLTRPGDDFEAMLRKLGTGLLVTELIGQGVNYVSGDYSRGAFGY FT WVENGKIQHAVQEITIAGNLVDMFRHIVAVGSDAISRGTKTTGSILIEQMSVAGT" FT misc_feature complement(21381..22262) FT /note="HMMPfam hit to PF01523, Putative modulator of DNA FT gyrase" FT CDS 22354..22971 FT /transl_table=11 FT /locus_tag="BP2965" FT /product="conserved hypothetical protein" FT /note="Weakly similar to several proteins of undefined FT function including: Pasteurella multocida hypothetical FT protein Pm0119 TR:Q9CPC8 (EMBL:AE006047) (180 aa) fasta FT scores: E(): 1.8e-18, 44.02% id in 159 aa and to Vibrio FT cholerae hypothetical protein Vc2536 TR:Q9KP43 FT (EMBL:AE004323) (193 aa) fasta scores: E(): 5.7e-16, 41.11% FT id in 180 aa" FT /db_xref="InterPro:IPR006839" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUV5" FT /protein_id="CAE43237.1" FT /translation="MTIAVQFAETVIIAKSVSTQFPMSSHSQEPVGEENFDDSEYDRPN FT KSQVKREMHALLDLGKELVELSPERLRQLPLEERLYEAIREAQRTTGREGRRRQIHFVG FT KLMRSAPAEAIRAQLDTWRNGSREETAAMHRLEALRERLLTDDDALTAVLQRNPDADIQ FT HLRALIRAARKEAAANAALSQGQEPQRKQYRALFQALKNLSA" FT CDS 22985..23659 FT /transl_table=11 FT /locus_tag="BP2966" FT /product="probable carboxylesterase" FT /note="Similar to many carboxylesterases including: Xylella FT fastidiosa Xf1624 TR:Q9PCY0 (EMBL:AE003989) (224 aa) fasta FT scores: E(): 1.5e-37, 49.53% id in 216 aa and to FT Pseudomonas fluorescens EstA SW:EST1_PSEFL (Q51758) (218 FT aa) fasta scores: E(): 2.9e-26, 41.31% id in 213 aa" FT /db_xref="GOA:Q7VUV4" FT /db_xref="HSSP:1AUO" FT /db_xref="InterPro:IPR003140" FT /db_xref="UniProtKB/TrEMBL:Q7VUV4" FT /protein_id="CAE43238.1" FT /translation="MTAQTDLLDCIELETAPNPTHAVIWLHGLGADGNDFVPIVPELRL FT DGLAVRFVFPNAPVQPVTINGGMAMRSWYDILVTDLVRREDAAGIRASEAAVRTLIARE FT NERGIPASKIVLAGFSQGCAMTLHTGLRLDQQLAGMMGLSGYLPLLDSAAAERHPANAA FT TPIFLAHGLYDPVVAPERADASRAHLQALGYDVRWHTYPMPHSVCLEEVADIGAFLREV FT LR" FT misc_feature 23039..23584 FT /note="HMMPfam hit to PF02230, FT Phospholipase/Carboxylesterase" FT CDS join(23856..24215,24218..24919) FT /pseudo FT /transl_table=11 FT /locus_tag="BP2967" FT /product="putative exported protein (pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 120. he sequence has been checked FT and believed to be correct. Similar to Clostridium FT acetobutylicum ABC transporter, periplasmic-binding, FT putative Cac0620 SWALL:Q97LE2 (EMBL:AE007577) (338 aa) FT fasta scores: E(): 1.4e-34, 36.85% id in 312 aa" FT /db_xref="PSEUDO:CAE43239.1" FT misc_feature 23856..23987 FT /note="Signal peptide predicted for BP2967 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.958) with cleavage site FT probability 0.923 between residues 44 and 45" FT variation 24216 FT /note="C in pertussis; (T)C in parapertussis and FT bronchiseptica" FT CDS 24916..25725 FT /transl_table=11 FT /locus_tag="BP2969" FT /product="putative ABC transport proteins, ATP-binding FT component" FT /note="Similar to Clostridium acetobutylicum nitrate ABC FT transporter ATP binding protein Cac0619 TR:Q97LE3 FT (EMBL:AE007577) (253 aa) fasta scores: E(): 2e-42, 48.42% FT id in 254 aa, and to Bacillus subtilis putative transporter FT YtlC TR:O34314 (EMBL:AF008220) (260 aa) fasta scores: E(): FT 2.9e-38, 47.58% id in 248 aa" FT /db_xref="GOA:Q7VUV3" FT /db_xref="HSSP:1Q1B" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VUV3" FT /protein_id="CAE43240.1" FT /translation="MSAVVHNLMPAPAAAKIELREVSLSYFTPEGKTEALSKVSFSLAP FT GEFVSLIGQSGCGKSTLLSLIAGLIPPTSGAVLVDGTPVTRPSPRIGYMLQQDYLFEWR FT TILDNVMLGAEIQGRRDARSEARAVHLLEKCGLGAFLEHTPRQLSGGMRQRAALARTLV FT TEPDVILLDEPFSALDSQTRLAISDEVVDILRRERKTVVLVTHDIGEAIAMTDRVIVLS FT RRPGRLKSQYCINFAEPRPTPFQARSRPEFNTYFEQLWEELDVHVEG" FT misc_feature 25051..25587 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 25072..25095 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 25357..25401 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature." FT CDS 25728..26564 FT /transl_table=11 FT /locus_tag="BP2970" FT /product="putative ABC transport proteins, inner membrane FT component" FT /note="Similar to Clostridium acetobutylicum FT uncharacterised permease Cac0618 TR:Q97LE4 (EMBL:AE007577) FT (264 aa) fasta scores: E(): 3.7e-38, 40.99% id in 261 aa FT and to Pseudomonas aeruginosa probable permease of ABC FT transporter Pa3512 TR:Q9HY97 (EMBL:AE004771) (258 aa) fasta FT scores: E(): 1.9e-19, 32.5% id in 240 aa" FT /db_xref="GOA:Q7VUV2" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7VUV2" FT /protein_id="CAE43241.1" FT /translation="MTAPAANTLALRPAHAPSEKYQEYLRRDRRRKHHVRLAQLMLLVL FT FLCAWEILPRMHVLNPLLTSYPSALWPTFFELWNHGNLPRHIAATVMATLVGFGLSMLI FT GVAVAAALWWSDFLYKVIDPFLVVANAMPKIAFVPIFYLWLGSDYAVYGMAVAIAVFVT FT IMVVYAGFRGVDPNKMKLAYTFGASRWQVLTKVILPGSVPTLIAAVKMNIGLALVGVIV FT GEFQSADLGLGFLIMNGSQIFKLNIVMTAITLLALISSVMYLVIYRLEAAVARRYA" FT misc_feature join(25827..25886,25998..26066,26103..26162,26172..26240, FT 26370..26438,26466..26534) FT /note="6 probable transmembrane helices predicted for FT BP2970 by TMHMM2.0 at aa 34-53, 91-113, 126-145, 149-171, FT 215-237 and 247-269" FT misc_feature 26235..26450 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT CDS 26579..27271 FT /transl_table=11 FT /locus_tag="BP2971" FT /product="putative hydrolase" FT /note="Similar to many proteins of undefined function FT including: Rhizobium loti Mlr4169 protein TR:Q98EN3 FT (EMBL:AP003003) (223 aa) fasta scores: E(): 5.1e-11, 32.74% FT id in 226 aa, and to Streptomyces coelicolor putative FT hydrolase Scd65.07C TR:Q9F2S5 (EMBL:AL392176) (224 aa) FT fasta scores: E(): 1.2e-07, 28.76% id in 226 aa" FT /db_xref="GOA:Q7VUV1" FT /db_xref="InterPro:IPR000868" FT /db_xref="UniProtKB/TrEMBL:Q7VUV1" FT /protein_id="CAE43242.1" FT /translation="MEFPQWVVDRVQARQGCLHPYDSLPGPRTAAVVIDMQRYFTLPGY FT QGECAAARAIVQPINRLCAAVRAAGGSVVWVQTASDHADSFWSHHHGVMLTPERSKRRL FT ETLKRDSEGYALHPDMDARAEDVRVTKRFYSAMAPGSSELEPLLRGRGIDTLLIAGTVT FT NVCCESTARDAMMRDFRTIMVDDALAAVTPAEHENALHGWMLFFGDVLSVDEASARLAA FT ADETRRIA" FT misc_feature 26666..27175 FT /note="HMMPfam hit to PF00857, Isochorismatase family" FT CDS complement(27283..27672) FT /transl_table=11 FT /locus_tag="BP2972" FT /product="conserved hypothetical protein" FT /note="Similar to Streptomyces coelicolor conserved FT hypothetical protein Scf76.17 TR:Q9RJF7 (EMBL:AL121600) FT (130 aa) fasta scores: E(): 6.3e-27, 58.91% id in 129 aa, FT and to Bacillus subtilis YurT protein TR:O32161 FT (EMBL:Z99120) (127 aa) fasta scores: E(): 3.4e-25, 57.93% FT id in 126 aa" FT /db_xref="InterPro:IPR004360" FT /db_xref="UniProtKB/TrEMBL:Q7VUV0" FT /protein_id="CAE43243.1" FT /translation="MRIRLNSIFVDDQDKALRFYTDVLGFTKKHDIPAGAARWITVVSP FT EGPDDLELVLEPNGHPAASAYQAALRQDGIPVTAFESADIHAEARRLKDRGVAFTIDPT FT PAGPATIAIFSDTCGNLIQLYQVER" FT misc_feature complement(27292..27648) FT /note="HMMPfam hit to PF00903, Glyoxalase/Bleomycin FT resistance protein/Dioxygenase superfamily" FT CDS complement(27778..29166) FT /transl_table=11 FT /gene="dbpA" FT /locus_tag="BP2973" FT /product="probable ATP-dependent RNA helicase" FT /note="Similar to Pseudomonas aeruginosa RNA helicase DbpA FT or Pa0455 TR:Q9I663 (EMBL:AE004483) (458 aa) fasta scores: FT E(): 1.8e-109, 63.83% id in 459 aa, and to Escherichia coli FT ATP-dependent RNA helicase thought to play a major role in FT ribosome assembly, DbpA or b1343 SW:DBPA_ECOLI (P21693) FT (457 aa) fasta scores: E(): 8.5e-85, 51.74% id in 458 aa" FT /db_xref="GOA:Q7VUU9" FT /db_xref="HSSP:1FUU" FT /db_xref="InterPro:IPR014001" FT /db_xref="UniProtKB/TrEMBL:Q7VUU9" FT /protein_id="CAE43244.1" FT /translation="MTNTSFSSLPLLPALLDNLQGLGFEQMTPIQAQSLPLILEGRDLI FT AQAKTGSGKTAAFGLGVLQNLDVNRLAPQALVLCPTRELADQVAQELRRLARLIPNVKV FT LTLCGGAAARPQAESLARGTHLVVGTPGRIQDHLARGSLDLSTLNTLVLDEADRMVDMG FT FYDDIAAIASHCPARRQTLLFSATYPDNIRKLSARFLRNPAEIKVEAQHDASRIEQLFF FT EIDEGQRLDAVATLLAHFRPASTLAFCNTKIRSHDLVERLRAQGISAQALNGDLEQRER FT DEILIQFANQSCAVLVATDVAARGLDIQNLGAVINVDVTKDTEVHVHRIGRSGRGDQKG FT LALSLCSPEEMRWANLIEQYQGAPLKWADLGSLRPKSDRPLRAPMITLCIQGGKKDKLR FT PGDLLGALTGDGGLAFEQVGKINITEFNAYVALDRQVAKQAFARLSNSNIKGRRFRMRF FT LEEF" FT misc_feature complement(28156..28401) FT /note="HMMPfam hit to PF00271, Helicase conserved FT C-terminal domain" FT misc_feature complement(28507..29118) FT /note="HMMPfam hit to PF00270, DEAD/DEAH box helicase" FT misc_feature complement(28687..28713) FT /note="ScanRegExp hit to PS00039, DEAD-box subfamily FT ATP-dependent helicases signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature complement(29002..29025) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(29283..30779) FT /transl_table=11 FT /locus_tag="BP2974" FT /product="putative integral membrane protein" FT /note="Similar to several including: Bacillus halodurans FT Bh2161 protein TR:Q9KAX5 (EMBL:AP001514) (477aa) fasta FT scores: E(): 1.3e-38, 51.11% id in 493 aa, and to Bacillus FT subtilis hypothetical 48.8 kDa protein YhfA TR:O07599 FT (EMBL:Y14083) (463 aa) fasta scores: E(): 2e-17, 33.8% id FT in 497 aa. Also highly similar to BP0358, 65.339% identity FT in 502 aa overlap." FT /db_xref="UniProtKB/TrEMBL:Q7VUU8" FT /protein_id="CAE43245.1" FT /translation="MGQQVVITAAHWMYLLGVVVIVITMIFRANVVVPSLLGTLLVGIA FT FGGSIVSGVTAVFNASFMAAKELFNIFLVIAFMTALLNALKTLGSDVRMVQPFRAVMTN FT GHIAFVVLALATYLISLFFWPTPAVPLVAAILLPVAIAAGLPPLGAACAIAIAGQGMAL FT SSDYVIGVAPGISAKAAGVATALVAERTLILSLVTGIVALVLAYVGMRRQIQAPSEALL FT DAWQRRAVVVPESVEESGTMDKGELAAAVDYDSGSVPLGKQGWSRLFAIVTPVVFLLVV FT LVMVAPRLFPSLPALRGGEAAALVGGAAALLMVAATAVGVPGRDFLNTAADHVTDGFVF FT AFKAMGSVLPIAGFFFLGAPDQAAGILGVEPGHAPNLLFDLLQAAQGWIPNSHLVVAFG FT VLIVGVITGIDGSGFSGLPLTGALSGALGATVGVDAATLAAVGQMGAIWTGGGTLVAWS FT SLIAVAGFARVPVLELVRKLFGPVVLGLIVSTVAAVMFMT" FT misc_feature complement(join(29292..29357,29379..29444,29475..29540, FT 29562..29627,29703..29768,29808..29873,29919..29975, FT 30156..30221,30309..30374,30414..30479,30525..30575, FT 30597..30662,30693..30758)) FT /note="13 probable transmembrane helices predicted for FT BP2974 by TMHMM2.0 at aa 7-29, 39-61, 68-85, 100-122, FT 135-157, 186-208, 268-287, 302-324, 337-359, 384-406, FT 413-435, 445-467 and 474-496" FT CDS 31076..31750 FT /transl_table=11 FT /locus_tag="BP2975" FT /product="putative GntR-family transcriptional regulator" FT /note="Similar to several including: Streptomyces FT coelicolor putative GntR-family transcriptional regulator FT Scgd3.11C TR:Q9XA67 (EMBL:AL096822) (216 aa) fasta scores: FT E(): 3.1e-14, 36.09% id in 205 aa and to Acinetobacter FT calcoaceticus transcriptional repressor MdcY TR:Q9F0Q8 FT (EMBL:AF209728) (224 aa) fasta scores: E(): 1.7e-13, 35.35% FT id in 198 aa" FT /db_xref="GOA:Q7VUU7" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VUU7" FT /protein_id="CAE43246.1" FT /translation="MTLGSQHSPLFALVQETLRKRILSGAYAQGERLVEGDLAEEMGVS FT RIPVREALRALAAAGLVRIEPRRGASVASLSPEHARDIVEVRATLEALNARLAAQPRNP FT QQVVDMDRAIRDGAHACEHGDTAALVEQNRQFHELLGGVSTNAVLQDLMRSLRDRTALL FT FARNSVTRAADILDEHAGILQAVTAGDADLASLLAARHVHNAAQWYFERPVDRKAVAAD FT TD" FT misc_feature 31115..31291 FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT misc_feature 31169..31243 FT /note="ScanRegExp hit to PS00043, Bacterial regulatory FT proteins, gntR family signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 31172..31237 FT /note="Predicted helix-turn-helix motif with score 1091 FT (+2.90 SD) at aa 44-65, sequence LVEGDLAEEMGVSRIPVREALR" FT repeat_region 31747..31778 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 31747..32799 FT CDS 31849..32799 FT /transl_table=11 FT /locus_tag="BP2976" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE43247.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 32107..32172 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 32230..32763 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(32768..32799) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(32796..35255) FT /transl_table=11 FT /locus_tag="BP2977" FT /product="conserved hypothetical protein" FT /note="Similar to several proteins of undefined function FT e.g. Escherichia coli O157:H7 hypothetical 52.7 kDa protein FT Ecs3450 TR:BAB36873 (EMBL:AP002562) (484 aa) fasta scores: FT E(): 4.1e-28, 32% id in 475 aa" FT /db_xref="GOA:Q7VUU6" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:Q7VUU6" FT /protein_id="CAE43248.1" FT /translation="MLRHVLAPMFEPASLVVIADRLLPVTSVLPSALRARTTVVQAAPG FT AAPELPAACAGVAEGLRPDLALVCVAPGVLPETLRRLAALAPRAVILLPHELPDPYPRG FT TQALCRAWAAENRCELLGPRSFGAQRPHAGLNLSQHPSLARAGRVALVAQSRSIMAAVM FT DWAEDVHIGFSIAVSLGDEAVVGLSQVLDYLASDSRTDSIVLYIEDVGPAREFMSALRA FT AASVKPVIVLKAGRADANGADAVFDAALRRAGAVRVRYFVQLFSAVKVLGYTRRPRGRR FT VALFSNGSGPPQLALDLIGPDAAVLQAKLSPATQRTLADMLEPDAATANPVITYTPLTP FT ERIQAILDCLLDDAGVDGVLVLLAPDALADMPAVARQLAQLAPRARKPVVSCFMGDAGM FT RPLRRMLDDAGTSAFRTPESAADAFGVLATHHYNQQLLLQTQPPEPPGLLPDSAGARDI FT MGQARAQGRRELDPIEARALLDAFYVPLREGPLGVRPIEAESRPMAIRVRRDPHFGPVI FT RFGAGGPDAVLSGADRGMDLPPLNGFLARQMIERSRLWRRVLAPQVTNAAAEALQHALV FT QVSEMVSELPDIESVDIDPLYAGETQLRAGGLRIVLCEREATVSPQLSGYAHMAIHPYP FT ARLVQARRFDDGTPWVIRPIRPEDGEPLQEFIRGLSERSRYMRFVSMMRELTPRMVARY FT TQVDYHRELALVAATQVPNPANRGHPREVIIGFAHYLRNPDGRGAEYALVIGDDWQRRK FT LGGQLMSALIDAAREQGLEYIDGLVLSTNRPMLTLMTRLGFTNDADPEDPTMRRVWLQL FT REPDAPA" FT misc_feature complement(32871..33101) FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family" FT misc_feature 35412..36794 FT /note="HMMPfam hit to PF00749, tRNA synthetases class I (E FT and Q)" FT CDS 35415..36797 FT /transl_table=11 FT /gene="gltX" FT /locus_tag="BP2978" FT /product="glutamyl-tRNA synthetase" FT /EC_number="6.1.1.17" FT /note="Similar to Escherichia coli glutamyl-tRNA synthetase FT GltX or b2400 SW:SYE_ECOLI (P04805) (471 aa) fasta scores: FT E(): 3.2e-90, 52.58% id in 464 aa and to Neisseria FT meningitidis glutamyl-tRNA synthetase GltX or Nma0250 FT TR:Q9JWT4 (EMBL:AL162752) (464 aa) fasta scores: E(): FT 6e-100, 56.68% id in 464 aa" FT /db_xref="GOA:Q7VUU5" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUU5" FT /protein_id="CAE43249.1" FT /translation="MRTRFAPSPTGFLHLGGARTALFSWAFARHHQGVFVLRIEDTDVE FT RSTPEAVQAILDSMDWLGMQPDEGPFYQMKRMDRYAEVLAGMLEAGTAYHCYCSPEEVD FT AMREAARAKGLKPRYDGTWRPEPGKTLPPVPADRKPVIRFRNPIDGATSWNDMVKGPIS FT FDNGELDDLIIARPDGTPTYNFCVVVDDWDMGITHVLRGDDHVNNTPRQINILRALGAT FT LPEYGHVPMILGPDGEKLSKRHGAVNVMEYDAQGYLPEAMVNYLARLGWSHGDDELFTR FT EQLVEWFDTRHLSKSASQWDPKKLNWVNAHYIKGMDDAELAGRVAPRVERRGGKPQAAD FT LPAIMGLLKDRAETLEQLAEDAMLFCGEYQPAPAELAAQHLTETARAALADFAARARDT FT EWNRAAISALIKAVLADRGLKMPQLGIPLRVAVTGRAQTPAVDAVLELLGKETVLARLQ FT AL" FT misc_feature 35433..35468 FT /note="ScanRegExp hit to PS00178, Aminoacyl-transfer RNA FT synthetases class-I signature. Confirmed by InterPro eMOTIF FT pattern match." FT CDS complement(36801..37988) FT /transl_table=11 FT /locus_tag="BP2979" FT /product="putative membrane transport protein" FT /note="Similar to many proposed transport proteins e.g. FT Clostridium acetobutylicum permease, MDR related, probably FT tetracycline resistance protein Cap0124 TR:Q97TH7 FT (EMBL:AE001438) (393 aa) fasta scores: E(): 3e-22, 26.89% FT id in 357 aa and to Pseudomonas aeruginosa probable MFS FT transporter Pa3303 TR:Q9HYU1 (EMBL:AE004752) (391 aa) fasta FT scores: E(): 1.8e-13, 28.53% id in 382 aa" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7VUU4" FT /protein_id="CAE43250.1" FT /translation="MSLSSESRAILLLALAAFASSTAFRICDPMLPQLAADFATTTGQA FT AYAVTAFAIAYGVLQMFFGPLGDRYGKYRVVCIATFACALGSAAAVLAGSLDALVAARA FT LSGAAGAGVVPLSMAWIGDNVPYERRQATLARFLTGTILGMAAGLFADTVGWRWAFAVL FT VVIYLVVGTLLYRELRRQAASGQTGAAGAARTGFVAQARLVLGTPWARVVLATVFFEGL FT LVFGTLAFAPSYLHARFGISLTAAGALVASYALGGLLYTLVAGHVLRRLGERGLALAGG FT LVLSAAFLCYWLGPQWLWSLPAGVLAGFGYYLLHATLQTNATQMVPAARGTAVAWFASC FT LFMGQAAGVALAGLVVDAAGAAMLFGMTALLLPLLGCGFAWALRRHAAAQTAQAA" FT misc_feature complement(join(36840..36905,36921..36986,37047..37097, FT 37110..37160,37200..37265,37296..37361,37464..37520, FT 37536..37586,37626..37691,37704..37769,37791..37856, FT 37917..37967)) FT /note="12 probable transmembrane helices predicted for FT BP2979 by TMHMM2.0 at aa 7-24, 44-66, 73-95, 99-121, FT 134-151, 156-175, 209-231, 241-263, 276-293, 297-314, FT 334-356 and 361-383" FT misc_feature complement(37884..37988) FT /note="Signal peptide predicted for BP2979 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.751 between residues 35 and 36" FT CDS complement(38057..38596) FT /transl_table=11 FT /locus_tag="BP2980" FT /product="putative lipoprotein" FT /note="no significant database hits" FT /db_xref="UniProtKB/TrEMBL:Q7VUU3" FT /protein_id="CAE43251.1" FT /translation="MFVLRGSEEVMSRVSISLVGALGVALMLGGCAARKESAATAPRAT FT PEAPEAVACTPAQAGDPMVGTWYSVSRQRGFAGDFQALTVLSADGTMRYETQLKVGRKT FT RPALRETGCWHVADGIYTMQTMQSNGEPVDASDPIYQNRYRVEKVDSGKLTLRELKRNG FT QAVTARRMQPGYRLPY" FT misc_feature complement(38483..38596) FT /note="Signal peptide predicted for BP2980 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.728) with cleavage site FT probability 0.665 between residues 38 and 39" FT misc_feature complement(38501..38566) FT /note="1 probable transmembrane helix predicted for BP2980 FT by TMHMM2.0 at aa 10-32" FT misc_feature complement(38504..38536) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(38768..39220) FT /transl_table=11 FT /locus_tag="BP2981" FT /product="putative AsnC-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa4508 TR:Q9HVR3 (EMBL:AE004864) FT (157 aa) fasta scores: E(): 7.9e-21, 44% id in 150 aa and FT to Caulobacter crescentus leucine-responsive regulatory FT protein Cc0805 TR:Q9AA06 (EMBL:AE005757) (155 aa) fasta FT scores: E(): 2.7e-19, 44% id in 150 aa" FT /db_xref="GOA:Q7VUU2" FT /db_xref="InterPro:IPR019888" FT /db_xref="UniProtKB/TrEMBL:Q7VUU2" FT /protein_id="CAE43252.1" FT /translation="MDKTDIGILKALQEDGRASAQQLSETVGLSAAPVWRRVKALEANK FT VITGYSAQVDRSKVGLQGCMFAQISLERHSAGTVETFERSVRDAPEILECYAVTGDSDF FT LLKILVESPEAYDRFLHRFLFNLPGIRQTRTIVVLRELKHEVRLPL" FT misc_feature complement(38837..39148) FT /note="HMMPfam hit to PF01037, AsnC family" FT CDS join(39322..39759,39761..42844) FT /pseudo FT /transl_table=11 FT /locus_tag="BP2982" FT /product="putative pyruvate ferredoxin/flavodoxin FT oxidoreductase (pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 146. The sequence has been checked FT and believed to be correct. Similar to Caulobacter FT crescentus pyruvate ferredoxin/flavodoxin oxidoreductase FT family protein Cc3176 SWALL:Q9A3M6 (EMBL:AE005981) (1134 FT aa) fasta scores: E(): 3.7e-102, 45.27% id in 1131 aa, and FT to Rhizobium loti Mlr5175 protein Mlr5175 SWALL:Q98CF1 FT (EMBL:AP003005) (1159 aa) fasta scores: E(): 1.9e-161, FT 46.71% id in 1156 aa. Also similar to BP3835, 48.699% FT identity (51.418% ungapped) in 1191 aa overlap." FT /db_xref="PSEUDO:CAE43253.1" FT variation 39760..39762 FT /note="GGG in pertussis; (GGCAACGCGGC)GGG in parapertussis FT and bronchiseptica" FT CDS 43150..46077 FT /transl_table=11 FT /gene="nrdA" FT /locus_tag="BP2983" FT /product="ribonucleoside-diphosphate reductase alpha chain" FT /EC_number="1.17.4.1" FT /note="Similar to Chlamydia trachomatis FT ribonucleoside-diphosphate reductase alpha chain NrdA or FT Ct827 SW:RIR1_CHLTR (O84834) (1047 aa) fasta scores: E(): FT 1.7e-190, 52.41% id in 954 aa, and to Burkholderia FT solanacearum putative ribonucleoside reductase 1 NrdA FT TR:CAD16512 (EMBL:AL646072) (987 aa) fasta scores: E(): 0, FT 76.61% id in 992 aa" FT /db_xref="GOA:Q7VUU1" FT /db_xref="InterPro:IPR013509" FT /db_xref="UniProtKB/TrEMBL:Q7VUU1" FT /protein_id="CAE43254.1" FT /translation="MQTTIASVTRPTAVPPAQSETSTDPNSGQWASYNIIRRNGSVVGF FT EPSKIAIAMTKAFLAVNGGQGAASARVRELVEQLTAQAVSALVRNRPAGGTFHIEDVQD FT QVELALMRSGEHDVARAYVLYRERRAQERAAAAEVLEKSSPAAAQEPTLSVVDNGVRRP FT LDLAALRATIEAAGEGLTQYTDTEAILKETVKNLYDGVPVDEVFKSAILAARALVEKDP FT AYSQVTARLLLHTIRKEVLGEEVSQADMATRYAEYFPAFIQRGIEGGLLDAKLAEYDLE FT RVAKALDGRRDLQFGYLGLQTLYDRYFLHVRGTRIELPQVFFMRVAMGLALREADREAR FT AIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAKYA FT GGLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWH FT LDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMENGEWTLFSPSDCPDLHDKYG FT KAFEQAYAGYEAKVASGELKLFKKMPAVSLWRKMLSMLFETGHPWITFKDPCNIRSPQQ FT HVGVVHSSNLCTEITLNTNATEIAVCNLGSVNLVAHMKPNANGGYELNHDKLKRTIGVA FT MRMLDNVIDINYYAVDKARNSNERHRPVGMGIMGFQDCLHVMRVPYASQDAIDFADRSM FT EAVCYHAYWASSELAQERGRYQSYEGSLWSRGILPQDTLAMLREERGGNVDVDDSSSLD FT WDTLRSRIKEHGMRNSNCIAIAPTATISNIIGASACIEPTFQNLYVKSNLSGEFTVVND FT YLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRKLYATAFEVEPSWLVECASRR FT QKWIDQAQSLNIYMSGASGKKLDDTYKLAWQRGLKTTYYLRTLGATSAEKSTGRGGELN FT AVSAGDHGAGSAVSAAPVLPEPEIVGAVCTMRPGDPGFEECEACQ" FT misc_feature 44002..45879 FT /note="HMMPfam hit to PF00317, Ribonucleotide reductase, FT all-alpha domain" FT misc_feature 45409..45477 FT /note="ScanRegExp hit to PS00089, Ribonucleotide reductase FT large subunit signature. Confirmed by InterPro eMOTIF FT pattern match." FT misc_feature 45484..45516 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 46099..47295 FT /transl_table=11 FT /gene="nrdB" FT /locus_tag="BP2984" FT /product="ribonucleoside-diphosphate reductase beta chain" FT /EC_number="1.17.4.1" FT /note="Similar to Chlamydia trachomatis FT ribonucleoside-diphosphate reductase beta chain NrdB or FT Ct828 SW:RIR2_CHLTR (O84835) (346 aa) fasta scores: E(): FT 3.6e-79, 58.18% id in 342 aa, and to Pseudomonas aeruginosa FT ribonucleoside reductase, small chain NrdB or Pa1155 FT TR:Q9I4I2 (EMBL:AE004545) (415 aa) fasta scores: E(): FT 3.7e-93, 58.07% id in 415 aa" FT /db_xref="GOA:Q7VUU0" FT /db_xref="InterPro:IPR000358" FT /db_xref="UniProtKB/TrEMBL:Q7VUU0" FT /protein_id="CAE43255.1" FT /translation="MLNWEEENIATKPATSPAPAGGREAAPAVRAATGVFGDAALPTPT FT APQHAASLGASDATAGRVKVADKRIINGETDVNQLVPFKYKWAWEKYLATCANHWMPQE FT INMSRDIALWKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFL FT LRQAFEEAIHTHAYQYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFHT FT GTPEADQKLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHC FT NFGIDLINTIKLENPHLWTPEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKS FT YLRFIANRRCQQIGIEPLFPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE" FT misc_feature 46396..46650 FT /note="HMMPfam hit to PF00268, Ribonucleotide reductase, FT small chain" FT misc_feature 46774..47265 FT /note="HMMPfam hit to PF00268, Ribonucleotide reductase, FT small chain" FT misc_feature 46801..46869 FT /note="1 probable transmembrane helix predicted for BP2984 FT by TMHMM2.0 at aa 235-257" FT CDS 47613..48140 FT /transl_table=11 FT /gene="bpH1" FT /locus_tag="BP2985" FT /product="histone protein" FT /note="Previously sequenced in Bordetella pertussis as FT histone H1 TR:Q45370 (EMBL:L37438) (182 aa) fasta scores: FT E(): 1.1e-39, 97.14% id in 175 aa" FT /db_xref="GOA:Q7VUT9" FT /db_xref="InterPro:IPR009970" FT /db_xref="UniProtKB/TrEMBL:Q7VUT9" FT /protein_id="CAE43256.1" FT /translation="MATAKKAAKKAVKKPAAKKAAAKKATPAKKAAVKKVAVKKVAAKK FT PAVKKVAAKKPAAKKVAKKAVAKKAVAKKAVAKKAVAKKAVAKKAVAKKAVAKKAPAKK FT AVAKKAVAKKAVAKKAVAKKAVAKKAVAKKAPAKKAAPKKPATPPSTAAAPGAKTALNP FT AASWPFPTGGRP" FT CDS 48279..48854 FT /transl_table=11 FT /locus_tag="BP2986" FT /product="putative integral membrane protein" FT /note="Similar to Escherichia coli hypothetical protein FT YggT or b2952 or z4297 or Ecs3828 SW:YGGT_ECOLI (P52058) FT (188 aa) fasta scores: E(): 3.3e-14, 35.75% id in 179 aa FT and to Vibrio cholerae hypothetical protein Vc0459 FT TR:Q9KUQ6 (EMBL:AE004132) (185 aa) fasta scores: E(): FT 4.9e-14, 38.69% id in 168 aa" FT /db_xref="GOA:Q7VUT8" FT /db_xref="InterPro:IPR003425" FT /db_xref="UniProtKB/TrEMBL:Q7VUT8" FT /protein_id="CAE43257.1" FT /translation="MATALMLGDIIRFLLEITFTLFGAALILRAWIHAVRLHPFNPLAR FT AIYQGTNWLVLPLRRVIPATGSIDWTSLIATWVAALIYLILVWLSAVGALPPASALPSA FT MGSALLMVLKWTLNLMVWMTLIQAVLSWVNPLSPLMPLLQTLTAPLLDPIRRILPRTAI FT DFSPLVLLIGAQILLMMVARLAYGIFGV" FT misc_feature join(48315..48383,48495..48563,48600..48668,48780..48848) FT /note="4 probable transmembrane helices predicted for FT BP2986 by TMHMM2.0 at aa 13-35, 73-95, 108-130 and 168-190" FT misc_feature 48594..48830 FT /note="HMMPfam hit to PF02325, YGGT family" FT CDS complement(48862..50325) FT /transl_table=11 FT /gene="dltA" FT /locus_tag="BP2987" FT /product="putative D-alanine-D-alanyl carrier protein FT ligase" FT /note="Similar to Lactococcus lactis D-alanine activating FT enzyme DltA TR:Q9CG49 (EMBL:AE006358) (499 aa) fasta FT scores: E(): 6.8e-40, 32.8% id in 445 aa and to Bacillus FT subtilis D-alanine-activating enzyme DltA SW:DLTA_BACSU FT (P39581) (503 aa) fasta scores: E(): 1e-32, 36.99% id in FT 492 aa" FT /db_xref="GOA:Q7VUT7" FT /db_xref="HSSP:1AMU" FT /db_xref="InterPro:IPR010071" FT /db_xref="UniProtKB/TrEMBL:Q7VUT7" FT /protein_id="CAE43258.1" FT /translation="MRGMYFDLRSFEFVSDARGGQADAVVGSDRVLTWQALREEAGQWA FT ARARAHGIGPDVPVVIHGHKEAAFFVAMAGALLAGAPFVPVDTIYPPERVRRIVEIVRA FT AAVYDTQADVFRPGAAEPAALAERGLAYVMFTSGSTGDPKGVQIGRESVALLGDWLRDG FT LALGEAPVFMNQAPFSFDLSMYEVFGTLAAGGTCVLNAREQIAAPQQWLGRLAGSGVTV FT WVSTPSFAHQQLVNRDFSPQQLRALRTFLFCGEPLPVALARKLRQRFPEAAILNTYGPT FT EATVATTALVVDDAVLAEHDPLPVGYAKPASLLYVADDEICIVGDYVMRGYLNRPDLNQ FT AKLFVHHDGRRGFRTGDLGRMREDGLLFCRGRMDDQIKLNGYRIELAEIDAALHALPGV FT AGGACAVLRRPDGTAVRVIGFVAQRTMEQASFQLPAALQQWKAQLTGRLPSYMVPSELV FT ACPDLPVSNNHKIDRKKLLEIYAAIPAAA" FT misc_feature complement(49108..50229) FT /note="HMMPfam hit to PF00501, AMP-binding enzyme" FT misc_feature complement(49174..49200) FT /note="ScanRegExp hit to PS00697, ATP-dependent DNA ligase FT AMP-binding site." FT misc_feature complement(49894..49929) FT /note="ScanRegExp hit to PS00455, Putative AMP-binding FT domain signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS complement(50336..51463) FT /transl_table=11 FT /gene="dltB" FT /locus_tag="BP2988" FT /product="putative protein involved in the transfer of FT D-alanine into teichoic acids" FT /note="Similar to Bacillus subtilis protein DltB thought to FT be involved in D-alanine transport SW:DLTB_BACSU (P39580) FT (395 aa) fasta scores: E(): 5.5e-25, 33.68% id in 282 aa, FT and to Lactococcus lactis peptidoglycan biosynthesis FT protein DltB TR:Q9CG50 (EMBL:AE006358) (407 aa) fasta FT scores: E(): 1.8e-23, 34.69% id in 245 aa" FT /db_xref="InterPro:IPR004299" FT /db_xref="UniProtKB/TrEMBL:Q7VUT6" FT /protein_id="CAE43259.1" FT /translation="MELFGSFAFFGGALFGGLGLLLYRTLGLPWRLGYRHLIGALCLAV FT WLAVFWTRPYQPLGLLAVASAALWAMRRGHLPTWAAVLLTMALLLLLKCGITTMTGMLG FT LSFATFRAVDVLLFAPRNERISPLDYCNYLFFPLTLLAGPMYRWRNFQADLKRGYEGVT FT LETWLAGLELLIFGVIQKFGVAEAIWRYGLNTLDAHDYSLTGVALNASLYSFYLFFDFA FT GYSSMAIGVGMLFGFTLPVNFRNPLASANPQDFWRRWHISLSEWLRDVVFMPIYKALSK FT TAFFGRHRLAAQNIGILATLLAMGVWNGLALHYVVSGLMFGAYSVGHNLLVQHARTRPA FT LQAFLARRPVQWAGRALTLILAALALYVFSGRSPI" FT misc_feature complement(join(50351..50407,50468..50533,50753..50818, FT 51188..51238,51299..51364,51386..51451)) FT /note="6 probable transmembrane helices predicted for FT BP2988 by TMHMM2.0 at aa 4-26, 33-55, 75-92, 215-237, FT 310-332 and 352-371" FT CDS complement(51471..51596) FT /transl_table=11 FT /locus_tag="BP2989" FT /product="hypothetical protein" FT /note="No significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VUT5" FT /protein_id="CAE43260.1" FT /translation="MKRFFWHLCLYLGLILVFVLQAQPTTGSGGPIKVEFQYQQF" FT CDS complement(51593..52720) FT /transl_table=11 FT /gene="dltD" FT /locus_tag="BP2990" FT /product="putative protein involved in the transfer of FT D-alanine into teichoic acids" FT /note="Similar to Staphylococcus xylosus DltD dltD FT SWALL:Q9X2N7 (EMBL:AF032440) (382 aa) fasta scores: E(): FT 3.8e-07, 21.71% id in 327 aa, and to Streptococcus FT agalactiae secreted protein, DltD dltD SWALL:Q8VM64 FT (EMBL:AJ291784) (420 aa) fasta scores: E(): 0.00019, 22.72% FT id in 330 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VUT4" FT /protein_id="CAE43261.1" FT /translation="MASAVALSLGLYWGADGALSALVHPHSSVASVRDNYLPNLGPDWG FT TQNVNLNRLGNALADGTLVVLGSSELSSHDLRFVPYRFFPQELKVPTLAYGHAMFQSYG FT IVSVLEAVADSLTPNTRLVIMVSPAWFASGGQLPRSAFAEHVTGPVWDRLWDKPATREQ FT MQDWIADNANWGLLWLIANGQVAELKDKIALWWNSRGERAPDRPRSPLAVPAHKYVSWP FT AAARLDAGRWHDLLGQARGIEAELGGHNPYDVRDDYYRQYLAPLNSPARNEFPEMPPMT FT RPELGDLARVMALLQQRKVRAYFVIQPFNPKLILDVERFDPVADAIKGMCARYGMGCLD FT MYSVPFQPGMVRDDMHLAELGWAIADQGIAEFFSR" FT CDS complement(52746..52985) FT /transl_table=11 FT /locus_tag="BP2991" FT /product="acyl carrier protein" FT /note="Similar to in regions to: Escherichia coli O157:H7 FT EDL933 putative acyl carrier protein z4853 TR:AAG58588 FT (EMBL:AE005571) (85 aa) fasta scores: E(): 0.0049, 37.03% FT id in 81 aa and to Bacillus subtilis D-alanyl carrier FT protein DltC SW:DLTC_BACSU (P39579) (78 aa) fasta scores: FT E(): 0.14, 30.5% id in 59 aa" FT /db_xref="GOA:Q7VUT3" FT /db_xref="InterPro:IPR006163" FT /db_xref="UniProtKB/TrEMBL:Q7VUT3" FT /protein_id="CAE43262.1" FT /translation="MHTEQELHTRIADIVESIILKKVTPDTALISSGLVDSLAAVDITL FT AVESEYGCSIPAPEIAEHLQSVRTLAGYVAANSQ" FT CDS complement(53266..53769) FT /transl_table=11 FT /gene="pcp" FT /locus_tag="BP2992" FT /product="putative lipoprotein" FT /note="Similar to many Pectobacterium carotovorum FT subspcarotovorum. outer membrane lipoprotein Pcp TR:Q9RB08 FT (EMBL:AF168687) (155 aa) fasta scores: E(): 3.6e-13, 40.64% FT id in 155 aa and to Salmonella typhimurium outer membrane FT lipoprotein SlyB SW:SLYB_SALTY (Q53549) (155 aa) fasta FT scores: E(): 8.1e-14, 40.64% id in 155 aa. Note the FT extended N-terminal region of the Bordetella orthologue." FT /db_xref="GOA:Q7VUT2" FT /db_xref="InterPro:IPR008816" FT /db_xref="UniProtKB/TrEMBL:Q7VUT2" FT /protein_id="CAE43263.1" FT /translation="MNYMHSPSVVAGRARRLLAVAAVAGSVAVLAGCANPSASSGVYTY FT GQAQREQIVRTGTVTGVRPITIQNDKSSGVGLVAGGALGGVAGNAVGGGTGRTIATVGG FT VILGALAGNAIENRAGKSSGYEITVRLDNGETRVVAQEADVPISVGQRVQVISGAGPTR FT VTPY" FT misc_feature complement(53650..53769) FT /note="Signal peptide predicted for BP2992 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.986) with cleavage site FT probability 0.567 between residues 40 and 41" FT misc_feature complement(53671..53703) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(53942..54883) FT /transl_table=11 FT /locus_tag="BP2993" FT /product="putative carbohydrate kinase" FT /note="Similar to Streptomyces coelicolor putative kinase FT Sc6g10.31C TR:Q9X816 (EMBL:AL049497) (338 aa) fasta scores: FT E(): 1.2e-28, 35.69% id in 311 aa and in the C-terminal FT region to Haemophilus influenzae ribokinase RbsK or Hi0505 FT SW:RBSK_HAEIN (P44331) (306 aa) fasta scores: E(): 0.0005, FT 24.34% id in 267 aa" FT /db_xref="GOA:Q7VUT1" FT /db_xref="InterPro:IPR011611" FT /db_xref="UniProtKB/TrEMBL:Q7VUT1" FT /protein_id="CAE43264.1" FT /translation="MTAPVLVCGSMAFDTIAVFEGRFKEHILAERIQSLSVSFLVPAMR FT KEYGGCAGNIAYNLKLLGGQPVPVATVGEDAGEYLARLSGLGIDVSRIQVVPGTFTAQC FT FITTDLEDNQIAAFHPGAMEFSSGNDLSDAQAAWAIIAPDSKAGMFAHAERLHARGIPF FT IFDLGQAMPLFDGADLERMLKLAQALTVNDYEAGVVEQRTGRSLAEIANGLRAAVVTRG FT AHGATVMAGGQTIEVAPVQAQAVVDPTGCGDAHRAGLLYGLTSGWGWADSCRLGNLMGA FT IKIASRGPQNHAPSRGEIDALMRANYGIGLPD" FT misc_feature complement(54110..54739) FT /note="HMMPfam hit to PF00294, pfkB family carbohydrate FT kinase" FT misc_feature complement(54665..54739) FT /note="ScanRegExp hit to PS00583, pfkB family of FT carbohydrate kinases signature 1. Confirmed by InterPro FT eMOTIF pattern match." FT CDS complement(54895..55992) FT /transl_table=11 FT /locus_tag="BP2994" FT /product="possible membrane protein" FT /note="Weakly similar in parts to Pseudomonas aeruginosa FT hypothetical protein Pa4851 TR:Q9HUW2 (EMBL:AE004898) (421 FT aa) fasta scores: E(): 0.00026, 27.27% id in 418 aa" FT /db_xref="InterPro:IPR011723" FT /db_xref="UniProtKB/TrEMBL:Q7VUT0" FT /protein_id="CAE43265.1" FT /translation="MALTTRCPQCGAAFRVVADQLRVRNGLVRCGECATVFDGRACLVP FT APDAGAPRAAAPPVLSAPPSDPPYAQPAAPAPAAPATQAPPAVLRGRADMQRGDGPPAD FT EDEPDAMAEGAPEDEADWDAAPRPESAEAGWRPILPRDPAHDDREPAFRIGRTATACAA FT ADAEDAVQVPGEVRTRYSNAVDSGRTPPEFLDDDRIQARQLVRRLWAYACVLGVLALAA FT QLVYVYRGAIAGAAPALRPVLEQACVPLQCSVGHARRIERISITSSSLRPAAGAAQGDD FT ARTRLTLNVVLRNRYDRPQEWPALVLDLTDISDTVVARKIILPQDYLPSQAGPAFAAGG FT EINLAIPVEVAGLQVNGYQLDKFFP" FT misc_feature complement(55303..55368) FT /note="1 probable transmembrane helix predicted for BP2994 FT by TMHMM2.0 at aa 208-230" FT CDS complement(join(56018..56410,56409..56939)) FT /pseudo FT /transl_table=11 FT /gene="prmA" FT /locus_tag="BP2995" FT /product="ribosomal protein L11 methyltransferase FT (Pseudogene)" FT /EC_number="2.1.1.-" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 177. The frameshift occurs within FT a polymeric tract of (GC)3. The sequence has been checked FT and believed to be correct. Similar to Escherichia coli FT ribosomal protein L11 methyltransferase PrmA or B3259 or FT Z4619 or Ecs4131 SW:PRMA_ECOLI (P28637) (293 aa) fasta FT scores: E(): 2.1e-24, 41.74% id in 309 aa, and to Neisseria FT meningitidis putative ribosomal protein L11 FT methyltransferase PrmA or Nma0595 TR:Q9JW08 (EMBL:AL162753) FT (295 aa) fasta scores: E(): 4.1e-31, 50.32% id in 306 aa. FT This CDS contains a frameshift mutation following codon FT 177." FT /db_xref="PSEUDO:CAE43266.1" FT variation complement(56408..56413) FT /note="(GC)3 in pertussis; (GC)4 in parapertussis and FT bronchiseptica" FT misc_feature complement(56928..56939) FT /note="ScanRegExp hit to PS00228, Tubulin-beta mRNA FT autoregulation signal." FT CDS complement(56958..58304) FT /transl_table=11 FT /gene="fabG" FT /locus_tag="BP2996" FT /product="biotin carboxylase" FT /EC_number="6.3.4.14" FT /note="Similar to Pseudomonas aeruginosa biotin carboxylase FT AccA or FabG or Pa4848 SW:ACCC_PSEAE (P37798) (449 aa) FT fasta scores: E(): 8e-121, 68.69% id in 444 aa, and to FT Neisseria meningitidis acetyl-coA carboxylase, biotin FT carboxylase Nmb1861 TR:Q9JXW3 (EMBL:AE002536) (453 aa) FT fasta scores: E(): 1.9e-122, 69.35% id in 447 aa" FT /db_xref="GOA:Q7VUS9" FT /db_xref="HSSP:1BNC" FT /db_xref="InterPro:IPR013817" FT /db_xref="UniProtKB/TrEMBL:Q7VUS9" FT /protein_id="CAE43267.1" FT /translation="MFEKILIANRGEIALRIQRACRELGIKTVVVHSEADRTAKYVRLA FT DESVCIGPAPSRESYLNMPALISAAEVTDAEAIHPGYGFLAENADFAERVEKSGFVFIG FT PRPETIRQMGDKVSAKRAMIEAGVPVVPGSEGALPDDPQEILRIAREVGYPVIIKASGG FT GGGRGMRVVYTEAALLNAVNMTRSEAGAAFNNPEVYLEKFLENPRHVEIQVLADGGRNA FT VWLGERDCSMQRRHQKVIEEAPAPGIPRRLIERIGDRCADACRKMGYRGAGTFEFLYEN FT GEFYFIEMNTRIQVEHPVTELITGVDVVQQQILIAAGEKFTLRQRDIQFKGHALECRIN FT AEDPFRFVPSPGRITNWHVPGGPGVRIDSHAFNGYFVPPNYDSMIAKVITYGDTREQAL FT ARMRIALSEMVVEGISTNIPLHRELLQDARFIEGGTSIHYLEHKLAQRP" FT misc_feature complement(57195..58295) FT /note="HMMPfam hit to PF00289, Carbamoyl-phosphate synthase FT L chain, N-terminal domain" FT misc_feature complement(57426..57449) FT /note="ScanRegExp hit to PS00867, Carbamoyl-phosphate FT synthase subdomain signature 2." FT misc_feature complement(57801..57845) FT /note="ScanRegExp hit to PS00866, Carbamoyl-phosphate FT synthase subdomain signature 1. Confirmed by InterPro FT eMOTIF pattern match." FT CDS complement(58314..58763) FT /transl_table=11 FT /gene="fabE" FT /locus_tag="BP2997" FT /product="biotin carboxyl carrier protein of acetyl-CoA FT carboxylase" FT /note="Similar to Pseudomonas aeruginosa biotin carboxyl FT carrier protein of acetyl-CoA carboxylase AccB or FabE or FT Pa4847 SW:BCCP_PSEAE (P37799) (156 aa) fasta scores: E(): FT 8.4e-24, 63.22% id in 155 aa, and to Neisseria meningitidis FT (serogroup A) putative acetyl-CoA carboxylase biotin FT carboxyl carrier protein AccB or Nma0597 or Nmb1860 FT TR:Q9JQT3 (EMBL:AL162753) (151 aa) fasta scores: E(): FT 5.6e-26, 68.62% id in 153 aa. Also similar to BP0883, FT 41.333% identity (44.928% ungapped) in 150 aa overlap." FT /db_xref="GOA:Q7VUS8" FT /db_xref="HSSP:1BDO" FT /db_xref="InterPro:IPR000089" FT /db_xref="UniProtKB/TrEMBL:Q7VUS8" FT /protein_id="CAE43268.1" FT /translation="MDLRKLKTLIDLVAESGIAELEITEGEGKVRIVKFSQALQPVAYH FT MPEAVAPAAAPAAAAAPAAEAAPAAPQGHVVKAPMVGTFYRAPNPGAAPFVDVGQSVKE FT GDPLCIIEAMKLLNEIEADKAGVIKEILVENGEPVEYGQPLFIIG" FT misc_feature complement(58320..58544) FT /note="HMMPfam hit to PF00364, Biotin-requiring enzyme" FT misc_feature complement(58398..58451) FT /note="ScanRegExp hit to PS00188, Biotin-requiring enzymes FT attachment site. Confirmed by InterPro eMOTIF pattern FT match." FT CDS complement(58853..59287) FT /transl_table=11 FT /gene="aroQ" FT /gene_synonym="aroD" FT /locus_tag="BP2998" FT /product="3-dehydroquinate dehydratase" FT /EC_number="4.2.1.10" FT /note="Similar to Pasteurella multocida 3-dehydroquinate FT dehydratase AroQ or AroD or Pm1093 SW:AROQ_PASMU (P57903) FT (148 aa) fasta scores: E(): 1.3e-28, 61.15% id in 139 aa, FT and to Burkholderia solanacearum putative 3-dehydroquinate FT dehydratase AroQ1 TR:CAD16492 (EMBL:AL646071) (156 aa) FT fasta scores: E(): 2.6e-33, 68.34% id in 139 aa" FT /db_xref="GOA:Q7VUS7" FT /db_xref="InterPro:IPR018509" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUS7" FT /protein_id="CAE43269.1" FT /translation="MAQRILVLHGPNLNLLGTREPHIYGSLTLAQIDQGLAALAGQLGV FT ALTSWQSNHEGALVERIQAAAADGTDFIIINAAAYTHTSVAIRDALAAVAIPFIEVHLS FT NLYKRDSFRQHSYLSDLAIGLITGLGADGYEAALRYAARH" FT misc_feature complement(58856..59281) FT /note="HMMPfam hit to PF01220, Dehydroquinase class II" FT misc_feature complement(59213..59266) FT /note="ScanRegExp hit to PS01029, Dehydroquinase class II FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(59366..59935) FT /transl_table=11 FT /locus_tag="BP2999" FT /product="thioredoxin" FT /note="Similar in parts to many thioredoxins e.g. Xylella FT fastidiosa thioredoxin Xf1990 TR:Q9PBZ5 (EMBL:AE004018) FT (211 aa) fasta scores: E(): 3.6e-12, 35.46% id in 141 aa FT and to Bradyrhizobium japonicum thiol:disulfide interchange FT protein TlpA SW:TLPA_BRAJA (P43221) (221 aa) fasta scores: FT E(): 1.9e-09, 34.1% id in 173 aa" FT /db_xref="GOA:Q7VUS6" FT /db_xref="HSSP:1FB6" FT /db_xref="InterPro:IPR012335" FT /db_xref="UniProtKB/TrEMBL:Q7VUS6" FT /protein_id="CAE43270.1" FT /translation="MHCYDRAMNRRLFLYAGVAAAAAASGGYFLAERRNARPAPSVAAP FT AEGAGDPLAQLRQLALPDLHGTPRKLADWGGQPLVVNFWATWCAPCVKEMPELDALQKK FT YPQVRFVGIGVDTTDNMRKFVEKIPVSYPLLVMGAGAIDTLRSLGNPSGGLPFTLLLSA FT DGSMKRKILGQIVYDDLDRSVAGLSA" FT misc_feature complement(59603..59707) FT /note="HMMPfam hit to PF00085, Thioredoxin" FT misc_feature complement(59642..59698) FT /note="ScanRegExp hit to PS00194, Thioredoxin family active FT site. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(59843..59899) FT /note="1 probable transmembrane helix predicted for BP2999 FT by TMHMM2.0 at aa 12-31" FT misc_feature complement(59843..59935) FT /note="Signal peptide predicted for BP2999 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.894) with cleavage site FT probability 0.230 between residues 31 and 32" FT CDS 59997..61367 FT /transl_table=11 FT /gene="mpl" FT /locus_tag="BP3000" FT /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate FT ligase" FT /EC_number="6.3.2.-" FT /note="Similar to Escherichia coli FT UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diami FT nopimelate ligase Mpl or b4233 SW:MPL_ECOLI (P37773) (457 FT aa) fasta scores: E(): 2.3e-91, 55.79% id in 457 aa, and to FT Pseudomonas aeruginosa FT UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diami FT nopimelate ligase Mpl or Pa4020 TR:Q9HX07 (EMBL:AE004818) FT (451 aa) fasta scores: E(): 1.7e-101, 60.83% id in 457 aa" FT /db_xref="GOA:Q7VUS5" FT /db_xref="HSSP:1GQY" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VUS5" FT /protein_id="CAE43271.1" FT /translation="MHLHILGICGTFMGGLALIARSAGHKVTGCDAGVYPPMSTQLAEQ FT GIELIEGFGADQLALAPDLFVIGNVVSRGNPLMEAILDSGARYISGPQWLGEHILPGAH FT VLAVAGTHGKTTTSSMLAWILQCAQRQPNFLIGGVAPDLQVSARYAPGARPFVIEADEY FT DTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAIETQFHHLVRTVPSNGQLVLPT FT DAPALERVLERGCWTPVARFGPGGQWQAGPADEQGAFEVSVDGRDAGTVRWTLGGEHNR FT RNALAALAAARHAGVAPAEGIEALSRFGGVKRRMELRGTVNGIRVYDDFAHHPTAIATT FT IEGLRRQVGAARILAVLEPRSNTMKLGTMAARLPEALAGADLVFCFGDHAGKHALGWDP FT ARVLAPLGERAAGYDDLPALVRAVAAAARPGDHVLVMSNGGFGGVHGKLLDALAQPR" FT misc_feature 60309..60998 FT /note="HMMPfam hit to PF01225, Mur ligase family, catalytic FT domain" FT CDS 61378..61971 FT /transl_table=11 FT /locus_tag="BP3001" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PA4968 TR:Q9HUJ7 (EMBL:AE004909) (206 aa) fasta FT scores: E(): 2.5e-20, 42.56% id in 195 aa" FT /db_xref="InterPro:IPR008886" FT /db_xref="UniProtKB/TrEMBL:Q7VUS4" FT /protein_id="CAE43272.1" FT /translation="MPILYLHGFRSSPDSFKARLLAQAMHQRGLAGQWQCPQLPASPQQ FT AAELALALAREQLAGQQDPRRLTVIGSSLGGYYATWLAERLGCQAVLLNPAVQAARDLA FT TQVGEHRMYHSDAPFHFLPEYVEELRALYADPLTHPERYFLVAATGDEVLDWREMRDRY FT PGCRQRIVQGGDHGLSDFPRWMPEVLEFALGSPH" FT CDS 62043..63926 FT /transl_table=11 FT /locus_tag="BP3002" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein NMA2205 TR:Q9JSP1 (EMBL:AL162758) (635 aa) fasta FT scores: E(): 1.2e-70, 40.63% id in 598 aa, and to Neisseria FT meningitidis ribonuclease II-related protein NMB0282 FT TR:Q9K185 (EMBL:AE002385) (626 aa) fasta scores: E(): FT 9.7e-70, 40.13% id in 598 aa" FT /db_xref="GOA:Q7VUS3" FT /db_xref="InterPro:IPR001900" FT /db_xref="UniProtKB/TrEMBL:Q7VUS3" FT /protein_id="CAE43273.1" FT /translation="MYVFYDDDGGFKAGNILSETDASLQVESETGKRSKIKRASTLFTF FT AAPEPAALMAQAATLAEDIDLQFLWECAPQEEFDAPALAAEYFGHAPGPVEQAALLMRL FT HGAPAYFHRRGKGRYRPAPPDILAAALAALEKKRLQAEQQQQWIDEMAQGRLPEAIAQA FT AESLLVRPDKNSMQWKAFDAACTQLQKTPERLLLDLGAWPHPLALHKRRFLAVNFPRGV FT GFPAMDVPSIERELPLAEGEIYSVDDITTTEIDDALSVSALPDGKIRVGIHVAAPGLAI FT TRGSEHDKLARTRLSTVYMPGEKIPMQPDNVIQAFSLDAGRPVPTVSLYVTADPRTGAI FT EASETRLERIVVRENLRHNDLDAQISEAALADPDAPLAYGHWLRPLWQLAQALGAQREA FT VRGKPENNTRVEYSFYLDGSPDDPDTPVRLVPRQRNAPLDRMVAEYMILANNIWGGLLN FT QHGVPGIYRSQQAGRVRMSTQALPHEAIGVPQYAWSTSPLRRYVDLVNQWQLIAAVEHG FT VSARLVAPFKPRDADLYAIIGAFDAQYAAWADFQNAMERYWCMRWLKQQGISRTTAHVL FT REDLVRLANAPLVTRVGGLPELERGAAVQIDIMNMDELALELDCRYLGPAD" FT misc_feature 62559..63590 FT /note="HMMPfam hit to PF00773, RNB-like protein" FT CDS 63964..64863 FT /transl_table=11 FT /locus_tag="BP3003" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PA0406 TR:Q9I698 (EMBL:AE004477) (319 aa) fasta FT scores: E(): 7.2e-18, 31.63% id in 294 aa" FT /db_xref="GOA:Q7VUS2" FT /db_xref="InterPro:IPR006260" FT /db_xref="UniProtKB/TrEMBL:Q7VUS2" FT /protein_id="CAE43274.1" FT /translation="MRRSASSSSILTRFWRWLGAPAQHYLLVGTAISLLVHAGALAWRF FT AGPAPARPQASTLEIVLVNARTDSAPVTAQVLAQSQVDGGGNAARGLAATPLPQTGRNA FT ETIVLEAMRKRQAQLEAEQDRLLTQLQSQARTGQERQPVHPWPDASEPGLDPREQPGVI FT QNAQIATLANRVQAYNAQPRKEFVAPAAQASRHAAYLDAWRTRIETIGTRHYPEDARGR FT IYGSLRITVTVRADGSLADFEIDQPSPHAVLNQAARRIVQMAAPFPPFPPEMARDTDVL FT VITRTWHFVNDSLETTAP" FT misc_feature 64024..64092 FT /note="1 probable transmembrane helix predicted for BP3003 FT by TMHMM2.0 at aa 21-43" FT CDS 64860..65723 FT /transl_table=11 FT /gene="aroE" FT /locus_tag="BP3004" FT /product="shikimate 5-dehydrogenase" FT /EC_number="1.1.1.25" FT /note="Similar to Escherichia coli shikimate FT 5-dehydrogenase AroE or B3281 SW:AROE_ECOLI (P15770) (272 FT aa) fasta scores: E(): 1.1e-37, 50.54% id in 277 aa" FT /db_xref="GOA:Q7VUS1" FT /db_xref="HSSP:1NYT" FT /db_xref="InterPro:IPR006151" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUS1" FT /protein_id="CAE43275.1" FT /translation="MTLPASPPRYAVIGNPIAHSRSPQIHAMFSAQTGRPLRYERLLAP FT VDGFLPTVQAFRESGGLGLNVTVPFKLEAYALAEARLSERARLAGAVNTLSWRDGAWHG FT CNTDGVGLVNDLLRLGVALAGARVLLVGAGGAARGVLQPLAAAGCARIHIVNRTAARAA FT ELAAAWRAAAPRTGTQVSAGALAQAAEPGGWDVAINATASGLQGAAPDLPGGLYAPDAL FT AYDMMYGARPTAFMRQAEADGAARCADGLGMLVGQAAESFHIWHGVRPDPGPVLLALRT FT ELLAAG" FT misc_feature 64932..65663 FT /note="HMMPfam hit to PF01488, Shikimate / quinate FT 5-dehydrogenase" FT repeat_region 65720..65751 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 65720..66772 FT CDS 65822..66772 FT /transl_table=11 FT /locus_tag="BP3005" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA4" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA4" FT /protein_id="CAE43276.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 66080..66145 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 66203..66736 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(66741..66772) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 66781..67329 FT /transl_table=11 FT /locus_tag="BP3006" FT /product="putative lipoprotein" FT /note="Similar to Escherichia coli hypothetical protein FT CrcA or B0622 SW:CRCA_ECOLI (P37001) (186 aa) fasta scores: FT E(): 1.5e-23, 38.91% id in 185 aa" FT /db_xref="GOA:Q7VUS0" FT /db_xref="InterPro:IPR009746" FT /db_xref="UniProtKB/TrEMBL:Q7VUS0" FT /protein_id="CAE43277.1" FT /translation="MTQYFRSLAFFLLPVPATAMACDGWPSWARGACQRVDQIWNEGGN FT DLYLTGYSWHNRAMYSSDKIRSFNELAWGGGLGKSIYDEDGDWQGLYAMAFLDSHSDIE FT PIAGYGFQKIGRIGADTRLGIGYTVFLTSRSDIMSRVPFPGILPLVSAGYRDATLYATY FT IPGGKGNGNVLFMFGRWEF" FT misc_feature 66781..66843 FT /note="Signal peptide predicted for BP3006 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.996 between residues 21 and 22" FT misc_feature 66814..66846 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(67326..67946) FT /transl_table=11 FT /locus_tag="BP3007" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti hypothetical protein FT MLL3532 TR:Q98G14 (EMBL:AP003002) (184 aa) fasta scores: FT E(): 1.2e-23, 48.12% id in 160 aa. Also similar to BP3250, FT 57.714% identity (57.714% ungapped) in 175 aa overlap." FT /db_xref="InterPro:IPR006840" FT /db_xref="UniProtKB/TrEMBL:Q7VUR9" FT /protein_id="CAE43278.1" FT /translation="MVLVMSLRESAAAADAGAGPLAGSARDLLAQWNGGEDVWVFAYGS FT LIWRPDFAWQERRLATVRGYHRSLCLWSHDHRGSPDNPGLVFGLDRGGCCRGVAFRVAG FT RDVPEVFQALWHREMSGGAYKPRWLRCHTGQAPVRGLAFVPDRRCRHYAGALSDELLIR FT AVRQAVGRSGACLDYVRETHRALNEHGIVDWRLGALVDRLAQP" FT CDS complement(68117..68587) FT /transl_table=11 FT /gene="grp" FT /locus_tag="BP3008" FT /product="glutamate uptake regulatory protein" FT /note="Similar to Zymomonas mobilis glutamate uptake FT regulatory protein Grp SW:GRP_ZYMMO (P74996) (164 aa) fasta FT scores: E(): 1.1e-25, 51.67% id in 149 aa" FT /db_xref="GOA:Q7VUR8" FT /db_xref="InterPro:IPR019888" FT /db_xref="UniProtKB/TrEMBL:Q7VUR8" FT /protein_id="CAE43279.1" FT /translation="MGVPVDQTDIKILRLLQKDATCSVAEIAEQVNLSVTPCWRRIQKL FT KDDGVIARNAVLLDPKALGLNLTVFVSIKTNQHNAKWTDNLINAVMSLPNVVEFYRMAG FT DIDYLLKVVVEDMAAYDRFYRRLIEAVDLLDVSASFSMEVIKSTTELPLDAV" FT misc_feature complement(68192..68503) FT /note="HMMPfam hit to PF01037, AsnC family" FT misc_feature complement(68441..68521) FT /note="ScanRegExp hit to PS00519, Bacterial regulatory FT proteins, asnC family signature." FT misc_feature complement(68459..68524) FT /note="Predicted helix-turn-helix motif with score 1178 FT (+3.20 SD) at aa 22-43, sequence CSVAEIAEQVNLSVTPCWRRIQ" FT CDS complement(68594..69853) FT /transl_table=11 FT /locus_tag="BP3009" FT /product="putative D-amino acid dehydrogenase small FT subunit" FT /note="Similar to Escherichia coli D-amino acid FT dehydrogenase small subunit DadA or DadR or B1189 or Z1952 FT or ECS1684 SW:DADA_ECOLI (P29011) (432 aa) fasta scores: FT E(): 1.2e-60, 41.62% id in 418 aa" FT /db_xref="GOA:Q7VUR7" FT /db_xref="InterPro:IPR006076" FT /db_xref="UniProtKB/TrEMBL:Q7VUR7" FT /protein_id="CAE43280.1" FT /translation="MMRVLVLGAGVAGMTAAYYLWRDGHAVTVVERQAGPARETSFGNA FT GGLCPSFAGPWAAPGMVAKVLRMALQRNAPIRFSLAPRPRKLAWLARWLGECSAERFRV FT NKLRMQRVAHYSQACLREIAAAGLPISFDFHQDGTLQLFRGEADLKAVPNITRALDEFE FT VPWQFLSGAEAAAREPALAGAGAPVAGGLFLPLDGSGDCYKFVCGIGAWLAGQGVAFRY FT GCTVASLAQAGGAIAGVHTDQGLLQADAYVIALGGSTPFLLRPLGLKLPIYPVKGYSIT FT APIADEARAPRAAIMDEYNKVMISRLGPRLRAAGMAELKGYGLAIDPGRVAFLKRVVRE FT WFPQGADYDAAQAWAGLRPMTPDGPAILGPTRYANLYLNCGHGSNGWTQACGTGRIVAD FT IVAGRTPQIDLDGLTADRYT" FT CDS complement(69906..70718) FT /transl_table=11 FT /locus_tag="BP3010" FT /product="putative oxidoreductase" FT /note="Similar to Rhizobium meliloti putative FT oxidoreductase protein SMC01157 TR:CAC41799 (EMBL:AL591783) FT (259 aa) fasta scores: E(): 3e-26, 39.01% id in 264 aa" FT /db_xref="GOA:Q7VUR6" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VUR6" FT /protein_id="CAE43281.1" FT /translation="MDLGIAGRTALVFGGSRGMGRACARQLALEGVKVTLAARTAQTLE FT QAAAQITREAGIGVGWVAADLTRAEGREAALAACPAPDILINNADGPLPGDFRDWSRDD FT WISALDAMMLGPIDMIRRVVDGMTQRGFGRIVNIVSRSVKAPHAELGLSNGARSGLIGF FT VAGLARQTVRHNVTINNLLPGAFATDAQVRHIQGLVEQSGQPFEKLWEERGRANPAGRY FT GQPEELGALCAYICSMHTGYMTDQNILIDGGGLSRHLLTRTRGAGAAA" FT misc_feature complement(69969..70061) FT /note="HMMPfam hit to PF00678," FT misc_feature complement(70152..70697) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT CDS 70770..71387 FT /transl_table=11 FT /locus_tag="BP3011" FT /product="hypothetical protein" FT /note="Weakly similar to Pseudomonas aeruginosa FT hypothetical protein PA2602 TR:Q9I0N5 (EMBL:AE004689) (201 FT aa) fasta scores: E(): 2.8e-08, 28.57% id in 133 aa. Also FT similar to BP2871, 45.562% identity (47.531% ungapped) in FT 169 aa overlap." FT /db_xref="GOA:Q7VUR5" FT /db_xref="InterPro:IPR010300" FT /db_xref="UniProtKB/TrEMBL:Q7VUR5" FT /protein_id="CAE43282.1" FT /translation="MANPFRNVAPRIGRLSAFVHPMRTPPLVSVPISPSLQNLCASVQS FT AQLNAAQALLRELAASVAGANGALADLPPELRAGHPDHYSRHVAYADPHGSFTIAYLIW FT RPGQFSPVHGHKTWCTYRVLQGELTESHYRWDPELGLALRTGAVARRPGDIVTATPGLA FT QIHRLGNAGDEVAISLHIYGVAQSDIATGVNHVVQEAAPRPH" FT CDS complement(71397..72446) FT /transl_table=11 FT /locus_tag="BP3012" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein SMA1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta FT scores: E(): 1.3e-40, 39.02% id in 328 aa" FT /db_xref="GOA:Q7VUR4" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VUR4" FT /protein_id="CAE43283.1" FT /translation="MRDPWMAGRPFSLTLWGRKSMKPRILKGFAASLCALALLGAGVAY FT APAHADERPLVLVVPYPPGGSTDILARIMQPRLSKELGGRAVVVENKVGAASQIATAYV FT ARAEPDGNTLLVSFDNHAINPAVKPKLPYDTFKDFVAISQTVRFPLVVGANPSVPGKTL FT AEFLDAARKRPANTFNYASTGVGSLNHLVPEELKRRAKVELLHVPYGGAGPAVQAVVGG FT QANMTWLSYAALRGQIQAGKIKPLAVAGDKRLSDLPEVPTVIESGFPGFVAYSWSGMFA FT PAGTPADTVRKLTAAFQTVLADPEVSRKLNEAGFEIVASDGPALEQYVRSEYERWDSFI FT KANNISLEN" FT misc_feature complement(72297..72362) FT /note="1 probable transmembrane helix predicted for BP3012 FT by TMHMM2.0 at aa 28-50" FT CDS complement(72566..73285) FT /transl_table=11 FT /locus_tag="BP3013" FT /product="hypothetical protein" FT /note="Poor database matches. Weakly similar to the FT N-terminal regions of Agrobacterium tumefaciens FT hypothetical protein AGR_C_2627p TR:AAK87216 FT (EMBL:AE008068) (292 aa) fasta scores: E(): 0.0046, 28.75% FT id in 240 aa, and Rhizobium loti hypothetical protein FT MLR0372 TR:Q98MZ7 (EMBL:AP002994) (296 aa) fasta scores: FT E(): 0.018, 25.45% id in 220 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VUR3" FT /protein_id="CAE43284.1" FT /translation="MLHAVGRTEFDHAVVMVRDRLDALAPHFERQGFHLSEKAVHNLGS FT CNRLIVLEGTYVELLGWPPGAPPARKEIADSPLGLEALVFRTYDAEATYRRLLEAGFAV FT NPVQELTRAAQWQGREVQARFHTVRFAEQPIPGIRMYFCRHLTPELVWNDELLSHPNGA FT RGIVSIEADAADAQAVAQRLAAVVDVPAEAVAGGWDVPLGNLRLRVRQDPACATPRLRT FT LTLENRDGAHYTLDTGV" FT CDS complement(73302..76037) FT /transl_table=11 FT /gene="secA" FT /gene_synonym="prlD" FT /gene_synonym="azi" FT /gene_synonym="pea" FT /locus_tag="BP3014" FT /product="preprotein translocase secA subunit" FT /note="Similar to Escherichia coli preprotein translocase FT SecA subunit or PrlD or Azi or Pea or B0098 SW:SECA_ECOLI FT (P10408) (901 aa) fasta scores: E(): 4.8e-198, 59.03% id in FT 913 aa" FT /db_xref="GOA:Q7VUR2" FT /db_xref="InterPro:IPR011116" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUR2" FT /protein_id="CAE43285.1" FT /translation="MVSLLKKLIGSRNDRLLKEYRKQVAQINSLEPKISALSDEELSAK FT TQEFRDRHQQGTSLDDLLPEAFAVVREAGKRVFGMRHFDVQMLGGIALHNGKIAEMRTG FT EGKTLMATLPVYLNAIAGKGVHVVTVNDYLARRDAEWMGRLYRFLGMSTGVVVPQQPND FT EKIAAYAADITYGTNNEFGFDYLRDNMEYRVEDRRQRRLFYAIVDEVDSILIDEARTPL FT IISGQAEDHTELYVRMNAVPPLLKRMASEPKPHEPEPEGDYWVDEKSQQVYMSEAGHES FT AEKILTRVGLLPEGESLYDPRHIALMHHMMVALRAHTLFFRDQQYVVQDDEVVIVDEFT FT GRLMVGRRWSDGLHQAVEAKEGVKIQHENQTLASITFQNYFRMYDKLSGMTGTADTEAY FT EFQEIYTLETVIIPTNKPMVRKDQNDQVFKTTQEKYQAILNDIRDCHERGQPVLVGTTS FT IENSELLAGLLRQAKLPHEVLNAKQHAREAEIVAEAGKPGHITIATNMAGRGTDIVLGG FT SVDKQVDLIHANEALSEAEKEARIETLRAEWKPLNERVKQAGGLRIIGTERHESRRIDN FT QLRGRAGRQGDPGSSRFYLSLEDPLMRIFAGDRVRAIMERLKLPEGEPIEAGMVTRSIE FT TAQRKVEGRNFDIRKQLLEYDDVANDQRKVLYSQRNEVLEAASIGATVEGLRDAAVAEM FT FRGFIPEESVEEQWDVAGLEKALAGDWHIQLPLTDMLEQEPNLTDEELLERVVAAARQI FT YTAKVEQVGAESWAQFERSIMLQSIDTHWREHLSALDYLRQGIHLRGYAQKNPKQEYKR FT EAFELFSGMLDRIRDDVVRVLMTVRVQSAEQVEQAEADAAQPHVQNVQYHHSDYDEALA FT DDGQPQGAQPVRNVLPKVGRNEPCPCGSGKKYKHCHGQLA" FT misc_feature complement(74493..74540) FT /note="ScanRegExp hit to PS01312, Protein secA signatures. FT Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(74724..76025) FT /note="HMMPfam hit to PF01043, SecA protein, amino terminal FT region" FT CDS complement(76217..77146) FT /transl_table=11 FT /locus_tag="BP3015" FT /product="putative peptidase family M23/M37 protein" FT /note="Similar to Shewanella violacea hypothetical protein FT YebA TR:Q9F1M5 (EMBL:AB052554) (299 aa) fasta scores: E(): FT 1.6e-20, 37.33% id in 233 aa, and to Xylella fastidiosa FT hypothetical protein XF0805 TR:Q9PF73 (EMBL:AE003920) (319 FT aa) fasta scores: E(): 5e-21, 36.13% id in 238 aa" FT /db_xref="GOA:Q7VUR1" FT /db_xref="InterPro:IPR002886" FT /db_xref="UniProtKB/TrEMBL:Q7VUR1" FT /protein_id="CAE43286.1" FT /translation="MLVGATLLTAAIVGAAVQRYMSPSAPAAYAVDWPAYAQAVSPDRD FT TAFVRENVTMLATKVGTLQAKLASIDGLGRRVAQVAGVAYTDPELATQLQGMPEEATHV FT MDDLFTDRQPPSPATAADLAQQLDEIQVRMAQQADNLRLLDAALTRRSADKALLPSAMP FT ITEYPYLSSSYGWRRNPVTGRYAMHEGLDFSAPSGTPILAASGGVVLVAKYQSGYGNSV FT EIDHGNGLITRYAHASRLLVKPGDVVERGQEIARVGSSGRSTGPHLHFEVRLAGQPLDP FT RLFLGPQQTAPPTVAQAPATAPAASATR" FT misc_feature complement(76295..76543) FT /note="HMMPfam hit to PF01551, Peptidase family M23/M37" FT misc_feature complement(77093..77158) FT /note="1 probable transmembrane helix predicted for BP3015 FT by TMHMM2.0 at aa 20-42" FT CDS 77332..77739 FT /transl_table=11 FT /locus_tag="BP3016" FT /product="conserved hypothetical protein" FT /note="Poor database matches. Similar to Neisseria FT meningitidis hypothetical protein NMA1734 TR:Q9JTK8 FT (EMBL:AL162757) (140 aa) fasta scores: E(): 0.01, 29% id in FT 131 aa" FT /db_xref="InterPro:IPR007922" FT /db_xref="UniProtKB/TrEMBL:Q7VUR0" FT /protein_id="CAE43287.1" FT /translation="MRGAGVLATARKHLQIQHAVAAVLPPALGALCVVAKLENQHLQLA FT VPGPAHAAKLRQMAPRIAQTLTGQGWNVNEISVRVQAGMPRPGQKAPRPPKLAQPLGST FT ALDAFETLHRGLRPGPLADAVARLLKHHKNR" FT CDS complement(77851..78774) FT /transl_table=11 FT /gene="lpxC" FT /gene_synonym="envA" FT /gene_synonym="asmB" FT /locus_tag="BP3017" FT /product="UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine FT deacetylase" FT /EC_number="3.5.1.-" FT /note="Similar to Escherichia coli FT UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine FT deacetylase LpxC or EnvA or AsmB or B0096 or Z0106 or FT ECS0100 SW:LPXC_ECOLI (P07652) (305 aa) fasta scores: E(): FT 1.9e-63, 52.98% id in 302 aa" FT /db_xref="GOA:Q7VUQ9" FT /db_xref="InterPro:IPR015870" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUQ9" FT /protein_id="CAE43288.1" FT /translation="MFRQRSIQNLVRTIGVGVHSGRRVELTLRPAEANTGIVFHRVDLP FT QVVDLPASAIGVGDTRMASVLQQGNVRVSTVEHLMSALAGLGIDNLHVDLTAEEVPIMD FT GSAATFVYLLRSAGIVEQNAPKRFIRVLKPIEVREGEGRNEKWARLEPHEGFALAFSID FT FRHPAIDSTANFAEIDFATHSYVREIARARTFGFVNEVEALRSMGLARGGSLDNAIVMD FT EFRVLNSDGLRYDDEFVKHKILDAIGDLYLLGKPLVARYVAYKSGHALNNQLARALLEQ FT QDAWELVTYESQAEAPQAFRHEWKLA" FT CDS complement(79003..80187) FT /transl_table=11 FT /gene="ftsZ" FT /gene_synonym="sfiB" FT /gene_synonym="sulB" FT /locus_tag="BP3018" FT /product="cell division protein FtsZ" FT /note="Similar to Escherichia coli cell division protein FT FtsZ or SfiB or SulB or B0095 SW:FTSZ_ECOLI (P06138) (383 FT aa) fasta scores: E(): 9.6e-59, 53.28% id in 396 aa" FT /db_xref="GOA:Q7VUQ8" FT /db_xref="HSSP:1FSZ" FT /db_xref="InterPro:IPR000158" FT /db_xref="UniProtKB/TrEMBL:Q7VUQ8" FT /protein_id="CAE43289.1" FT /translation="MMNFEMLENNAKGTVIKVVGVGGAGGNAVAHMIRSGVSGVDFICA FT NTDAQALAATNAPVQIRLGRTGLGAGAKPEQGRASAETAREEIRAALNGAHMVFITAGM FT GGGTGTGAGPVVAEVAKELGILTVGVVTKPFTFEGNKRLRMAEDGIGELGKHVHSLIVV FT LNENLYELMDDDATQEDCFKAADDILHNACAGIAEIINVEGNVNVDFEDVKTIMGEQGQ FT AMMGTAAASGADRARVAAEKAIACPLLEGVDLNGARGVLVNITASRTLKMRETREIMET FT IRSYASDDATVIFGTAYDEQMGEELRVTVVATGLGREAVRPQLVQHTSEALRTGTDNMP FT VGNMLAGQQGDYRGLDMPSVMRNPRSQASAQVRALESSGMDHFDIPAFLRKQAD" FT misc_feature complement(79537..80010) FT /note="HMMPfam hit to PF00091, Tubulin/FtsZ family" FT misc_feature complement(80092..80154) FT /note="HMMPfam hit to PF00091, Tubulin/FtsZ family" FT CDS complement(80376..81602) FT /transl_table=11 FT /gene="ftsA" FT /gene_synonym="divA" FT /locus_tag="BP3019" FT /product="cell division protein FtsA" FT /note="Similar to Escherichia coli cell division protein FT FtsA or DivA or B0094 or Z0104 or ECS0098 SW:FTSA_ECOLI FT (P06137) (420 aa) fasta scores: E(): 5.2e-64, 45.76% id in FT 413 aa, and to Pseudomonas aeruginosa cell division protein FT FtsA or PA4408 SW:FTSA_PSEAE (P47203) (417 aa) fasta FT scores: E(): 5.2e-86, 58.16% id in 404 aa" FT /db_xref="GOA:Q7VUQ7" FT /db_xref="HSSP:1E4F" FT /db_xref="InterPro:IPR003494" FT /db_xref="UniProtKB/TrEMBL:Q7VUQ7" FT /protein_id="CAE43290.1" FT /translation="MTRDIKDLIVALDIGTSKVVAVVAEILPEGRFEVLGLGQHESRGM FT RKGVVVNIETTVNSIQRALEEAELMADCKIRDVYAGIAGSHIRSFNSSGMVAVKDKEVT FT ATDVARVIETAKAVNIPTDQQVLHVLTQEFIVDGQEDIREPIGMSGLRLEVRVHIVTGA FT VSAAQNIVKCVRRCGLEVQDLILQPLASSLACLTADEKELGVVLVDIGGGTTDVAIFTG FT GAIRHTAVIPIAGDQITNDIAAMLRTPTPDAEEIKLRYGVAKQVLARPDEAVEVPGLGD FT RGPRQVKRQALGAVIEPRVEELFTLIQQVVRDSGYEDLLASGVVLTGGSAQMPGMIELA FT EDVFLKPVRVAVPEYEGSLADVMRNPRFSTVMGLLQEARMQRLRGRKVAAQTGNFKTLL FT ARMKEWFMN" FT misc_feature complement(80379..81509) FT /note="HMMPfam hit to PF02491, Cell division protein FtsA" FT CDS complement(81607..82428) FT /transl_table=11 FT /gene="ftsQ" FT /locus_tag="BP3020" FT /product="putative cell division protein FtsQ" FT /note="Similar to Pseudomonas aeruginosa putative cell FT division protein FtsQ or PA4409 TR:Q9LCT5 (EMBL:U19797) FT (287 aa) fasta scores: E(): 7e-19, 32.12% id in 249 aa, and FT to Escherichia coli cell division protein FtsQ or B0093 FT SW:FTSQ_ECOLI (P06136) (276 aa) fasta scores: E(): 2.3e-14, FT 29.32% id in 266 aa" FT /db_xref="GOA:Q7VUQ6" FT /db_xref="InterPro:IPR013685" FT /db_xref="UniProtKB/TrEMBL:Q7VUQ6" FT /protein_id="CAE43291.1" FT /translation="MWNDARTINLIANTLAVLAVAAMLLAGVAWVAQRPYFTLAAIEIE FT SMPETEMHYVSTGAVRAAIAGRFGGNFFTVDLDEAREAFESVPWVRHATVRRIWPNTLR FT VRVEEQQPLALWNENQMINTWGEAFTANTGELADDMVLPHFTGPEGTESLVVQRYAELA FT RWFAPLDMHVRELVLNPRYAWAVTLSNGMKLDLGRDPGADAPDPHGLPGALPFAARIQR FT FVQAWPVVSSRLEGRTVTQADLRYPTGFALALAPLPPEHASHSKSKPAKKR" FT misc_feature complement(82336..82401) FT /note="1 probable transmembrane helix predicted for BP3020 FT by TMHMM2.0 at aa 9-31" FT CDS complement(82441..83391) FT /transl_table=11 FT /gene="ddlB" FT /gene_synonym="ddl" FT /locus_tag="BP3021" FT /product="D-alanine--D-alanine ligase B" FT /EC_number="6.3.2.4" FT /note="Similar to Escherichia coli D-alanine--D-alanine FT ligase B DdlB or Ddl or B0092 SW:DDLB_ECOLI (P07862) (305 FT aa) fasta scores: E(): 7.1e-53, 50.98% id in 306 aa, and to FT Pseudomonas aeruginosa D-alanine:D-alanine ligase B DdlB or FT PA4410 TR:Q9LCT6 (EMBL:U19797) (319 aa) fasta scores: E(): FT 1.7e-56, 53.13% id in 303 aa" FT /db_xref="GOA:Q7VUQ5" FT /db_xref="InterPro:IPR013817" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUQ5" FT /protein_id="CAE43292.1" FT /translation="MSKQFGKVGVLYGGRSAEREVSLMSGKGVHEALLSAGVDAHLFDT FT GERSLADLAAAGFERVFIALHGRYGEDGTLQGALELLGIPYTGSGPLASSLSMDKIMTK FT RVWLQHGLPTPAFEVLGGSTELRLVPDRLGLPLILKPPHEGSTVGITKVAGYSDMKAAY FT ELAARFDAEVLAEQFITGRELTVAVLGSGAAARALPVIEIVAPGGNYDYEHKYFSDDTQ FT YFCPADLPADVAADVAAVAERAYAALGCEGWGRVDFILDRENRPWLLEMNTSPGMTGHS FT LVPMAARAVGMSYADLCVAILAEAACKVRSPARQD" FT misc_feature complement(82483..83376) FT /note="HMMPfam hit to PF01820, D-ala D-ala ligase" FT misc_feature complement(83161..83196) FT /note="ScanRegExp hit to PS00843, D-alanine--D-alanine FT ligase signature 1. Confirmed by InterPro eMOTIF pattern FT match." FT CDS complement(83388..84794) FT /transl_table=11 FT /gene="murC" FT /locus_tag="BP3022" FT /product="UDP-N-acetylmuramate--alanine ligase" FT /EC_number="6.3.2.8" FT /note="Similar to Escherichia coli FT UDP-N-acetylmuramate--alanine ligase MurC or B0091 FT SW:MURC_ECOLI (P17952) (491 aa) fasta scores: E(): 8.1e-91, FT 53.11% id in 465 aa, and similar to Neisseria meningitidis FT UDP-N-acetylmuramate--alanine ligase MurC or NMA2061 FT TR:Q9JSZ8 (EMBL:AL162758) (506 aa) fasta scores: E(): FT 1.2e-106, 60.47% id in 468 aa" FT /db_xref="GOA:Q7VUQ4" FT /db_xref="InterPro:IPR005758" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUQ4" FT /protein_id="CAE43293.1" FT /translation="MKHRIQHIHFVGVGGSGMSGIAEVLLNLGYTISGSDLNESAVTRR FT LAELGMRIAIGHDRANVAGAGAIVTSTAVAGDNPEVLAARAARIPVVPRAVMLAELMRL FT KRGIAVAGTHGKTTTTSLVASVLAAGGLDPTFVIGGRLTSAGANARLGQGEYIVVEADE FT SDASFLNLLPVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAILCADDANV FT REIMPFVSRPITTYGLSPDAQVCAQDVQADGTRMRFTVQRRDRDVVLPALQVELNLPGL FT HNVRNALAAIAVATELGVDDAAIREALAAFKGVGRRFTQWGDLPVPAAHGGGIFTLVDD FT YGHHPVEMAATLAAARGAWPQRRIVLAFQPHRYTRTRDCFEDFVRVLGSADGVLLTEVY FT AAGEAPLVAADGRALSRALRVAGKVEPVFVEDVGELPQAILDFVRDGDVVVVMGAGSIS FT KTPALVGELA" FT misc_feature complement(83760..84476) FT /note="HMMPfam hit to PF01225, Mur ligase family, catalytic FT domain" FT CDS complement(84791..85864) FT /transl_table=11 FT /gene="murG" FT /locus_tag="BP3023" FT /product="UDP-N-acetylglucosamine--N-acetylmuramyl-" FT /EC_number="2.4.1.-" FT /note="Similar to Escherichia coli FT UDP-N-acetylglucosamine--N-acetylmuramyl- MurG or B0090 FT SW:MURG_ECOLI (P17443) (354 aa) fasta scores: E(): 1.9e-56, FT 48.28% id in 350 aa, and to Neisseria meningitidis FT UDP-N-acetylglucosamine--N-acetylmuramyl- NMB0422 TR:Q9K0Y2 FT (EMBL:AE002398) (355 aa) fasta scores: E(): 3.1e-65, 54.02% FT id in 348 aa" FT /db_xref="GOA:Q7VUQ3" FT /db_xref="InterPro:IPR007235" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUQ3" FT /protein_id="CAE43294.1" FT /translation="MSAPTILIMAGGTGGHIMPGLAVAEVLRERGWRVLWLGNPDKMEG FT RLVPPRGIELVPLRFQGVRGRGAAALLKLPFLLARACAQAWRRLADIRPDVVLGMGGYV FT AFPGGVMAALRRTPLVVHEQNAVAGTANRWLARLARRVLSGFPGVLPRGEALGNPVRAD FT LCALPEPAERYAGRSGALRVLVVGGSLGAHALNTTVPQALALLPEQARPQVVHQAGEQH FT LPALQQAYAQAGVQADCRAFIDDMADAMAQADLLICRAGAMTVSEVAAAGVAALFVPFP FT HAIDDHQTANARFLSDAQAAWLQPQASLTPQWLAQWLGQRTRQELQAVAGRARTHALPR FT AAAHIADVCEQAARRAS" FT misc_feature complement(85793..85864) FT /note="Signal peptide predicted for BP3023 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.819) with cleavage site FT probability 0.760 between residues 24 and 25" FT CDS complement(85861..87054) FT /transl_table=11 FT /gene="ftsW" FT /locus_tag="BP3024" FT /product="cell division protein FtsW" FT /note="Similar to Escherichia coli cell division protein FT FtsW or B0089 or Z0099 or ECS0093 SW:FTSW_ECOLI (P16457) FT (414 aa) fasta scores: E(): 6.3e-53, 40.63% id in 379 aa" FT /db_xref="GOA:Q7VUQ2" FT /db_xref="InterPro:IPR013437" FT /db_xref="UniProtKB/TrEMBL:Q7VUQ2" FT /protein_id="CAE43295.1" FT /translation="MSLFAELTASVNAVRPGRTRMRNYDMPLIVAASTLLLLGLLMVYS FT ASIALADGPRYASYGRYYFVIRHGLFLTAGLLAAAVVLSVPIRVWQRLAVPLFMFALIL FT LVAVLIPGIGREVNGAHRWIPLGPLNFQPSELMKLAALLYAADYTVRKQEHMQAFSRGF FT LPMACALGGVGMLLLLEPDLGAFMVIVAIAIGILFLGGINGKYFSSLLAVLVGTFLMLI FT WVSPWRRARLFAYLDPWNKANAYGSAYQLSHSLIALGRGEWFGVGLGASVEKLHYLPEA FT HTDFLMAVVGEELGFAGVMLVITLFAIIVYRGFDIGRQAIAMERTFAGLVAHGVAMWVG FT VQAFINMGVCLGLLPTKGLTLPLMSYGGSGIVMNLCALAMLIRVDVENRVMMRGGRV" FT misc_feature complement(85885..86979) FT /note="HMMPfam hit to PF01098, Cell cycle protein" FT misc_feature complement(join(85909..85974,86020..86073,86113..86169, FT 86374..86427,86449..86505,86518..86583,86620..86685, FT 86716..86772,86794..86859,86905..86970)) FT /note="10 probable transmembrane helices predicted for FT BP3024 by TMHMM2.0 at aa 28-50, 65-87, 94-113, 123-145, FT 157-179, 183-202, 209-227, 295-314, 327-345 and 360-382" FT misc_feature complement(86902..87054) FT /note="Signal peptide predicted for BP3024 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.963) with cleavage site FT probability 0.945 between residues 51 and 52" FT CDS complement(87051..88583) FT /transl_table=11 FT /gene="murD" FT /locus_tag="BP3025" FT /product="putative peptidoglycan synthesis protein" FT /note="Similar to Neisseria meningitidis FT UDP-N-acetylmuramoylalanine--D-glutamate ligase NMB0420 FT TR:Q9K0Y4 (EMBL:AE002398) (445 aa) fasta scores: E(): FT 3.7e-22, 36.53% id in 490 aa, and to Escherichia coli FT UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD or FT B0088 SW:MURD_ECOLI (P14900) (437 aa) fasta scores: E(): FT 2.6e-17, 37.52% id in 493 aa" FT /db_xref="GOA:Q7VUQ1" FT /db_xref="HSSP:1E0D" FT /db_xref="InterPro:IPR005762" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUQ1" FT /protein_id="CAE43296.1" FT /translation="MNTTETSRAAAPLVLILGLGETGVAAARWYARQGSPLRVTDSRAQ FT PGGLAALQAALADATVEYRLGCGEQFPPDLLDGVAQIVLSPGLVPHESPTRELLEQARE FT RNVEVVGEIELFARALAGLAESREYRPRVLAITGTNGKTTVTALTRQLIEAGGMSARAA FT GNISPAALAALMDALDQDDLPQVWVLELSSFQLETTRTLAPDAAVVLNVTQDHLDWHGD FT MQAYAQAKARILKPARLAIVNRDDPLAVAMVESLQALNVRSFGRDVPALVGDMGLELGQ FT GVAWLTACESNDFDEPAPAPRRKKDAPPPTRAGGRMSRLMPVDALRIRGVHNALNALAA FT MQLARSLDLGWGPMLRTLRDYAGEPHRAELVRSIGDVDYINDSKGTNVGATVAALEGLG FT QQVVLIAGGQGKGQDFSPLVPVVRRHARAVVLIGVDGAAIGKVLEPTGVPCAAAADMRE FT AVRRAAELAQPGDAVLLSPACASFDMFRNYPHRGEVFAAEVRELALDRGEVA" FT misc_feature complement(87423..88187) FT /note="HMMPfam hit to PF01225, Mur ligase family, catalytic FT domain" FT misc_feature complement(88104..88127) FT /note="ScanRegExp hit to PS00687, Aldehyde dehydrogenases FT glutamic acid active site." FT misc_feature complement(88113..88184) FT /note="ScanRegExp hit to PS01011, Folylpolyglutamate FT synthase signature 1." FT misc_feature complement(88503..88583) FT /note="Signal peptide predicted for BP3025 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.885) with cleavage site FT probability 0.800 between residues 27 and 28" FT CDS complement(88580..89713) FT /transl_table=11 FT /gene="murX" FT /gene_synonym="mraY" FT /locus_tag="BP3026" FT /product="phospho-N-acetylmuramoyl-pentapeptide-transfera FT se" FT /EC_number="2.7.8.13" FT /note="Similar to Escherichia coli FT phospho-N-acetylmuramoyl-pentapeptide-transferase MraY or FT MurX or B0087 SW:MRAY_ECOLI (P15876) (360 aa) fasta scores: FT E(): 2.3e-45, 54.81% id in 374 aa, and to Neisseria FT meningitidis phospho-N-acetylmuramoyl-pentapeptide- FT transferase NMB0418 TR:Q9K0Y6 (EMBL:AE002398) (360 aa) FT fasta scores: E(): 4.2e-50, 56.68% id in 374 aa" FT /db_xref="GOA:Q7VUQ0" FT /db_xref="InterPro:IPR018480" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUQ0" FT /protein_id="CAE43297.1" FT /translation="MRAIGVFEYITLRAVLACATALLIGLVAGPRVIRRLTEMKIGQAV FT RAYGPESHLVKTGTPTMGGALILIAIAISTLLWADWTNRFVWVVLLVTFGFGWIGWMDD FT YRKVVYRDPEGMPARQKFFWQATIGLVAAVYLAFAVSAPANTELWPLFKAWVGSGFTMP FT LPTRADLIVPFFKSVSYPLGVLGFVALTWAVIVGTSNAVNLTDGLDGLAIMPTVMVGSA FT LGIFAYVVGRVDYSKYLLFPYIPGAAELMVLCAAIGGAGLAFLWFNAYPAQVFMGDVGA FT LALGGALGTIAVIVRQEIVLFIMGGVFVVETLSVMVQVTWFKYTKRKYGQGRRIFRMAP FT LHHHFEVGGWKETQVVVRFWIITMMLVLVGLSTLKLR" FT misc_feature complement(join(88592..88648,88751..88816,88832..88897, FT 88928..88993,89015..89080,89126..89191,89282..89347, FT 89408..89458,89480..89536,89612..89677)) FT /note="10 probable transmembrane helices predicted for FT BP3026 by TMHMM2.0 at aa 12-34, 59-78, 85-102, 122-144, FT 174-196, 211-233, 240-262, 272-294, 299-321 and 355-374" FT misc_feature complement(88811..89458) FT /note="HMMPfam hit to PF00953, Glycosyl transferase" FT misc_feature complement(89081..89116) FT /note="ScanRegExp hit to PS01348, mraY family signature 2." FT misc_feature complement(89510..89548) FT /note="ScanRegExp hit to PS01347, mraY family signature 1." FT CDS complement(89739..92576) FT /transl_table=11 FT /gene="murE" FT /locus_tag="BP3027" FT /product="Possible murein precusor biosynthesis FT bifunctional protein" FT /note="Putative fused protein. N-terminal region is similar FT to Escherichia coli FT UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela FT te ligase MurE SW:MURE_ECOLI (P22188) (494 aa) fasta FT scores: E(): 2e-41, 42.77% id in 491 aa. C-terminal region FT is similar to to Escherichia coli FT UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate FT --D-alanyl-D-alanyl ligase MurF SW:MURF_ECOLI (P11880) (452 FT aa) fasta scores: E(): 6.5e-52, 42.55% id in 430 aa. FT Possibly bifunctional, catalysing the last two steps in the FT synthesis of UDP-N-acetylmuramyl-pentapeptide" FT /db_xref="GOA:Q7VUP9" FT /db_xref="HSSP:1GG4" FT /db_xref="InterPro:IPR018109" FT /db_xref="UniProtKB/TrEMBL:Q7VUP9" FT /protein_id="CAE43298.1" FT /translation="MSPTNRLNAVQRQHLDQALAWLRGCVAPTADLRLDSREIEPGDVF FT VACPGLVSDGRQFMDQALARGASAILYETEGAPVAPAGAQALPVAQLRTLLGALADEWY FT GRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIGTLGALLPDGQSLGGSLTTP FT DVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDHIRIAVAGFTNLTRDHLDYHGTMQ FT RYEQAKAALFQWPDLQAAVVNADDPAGERLLASLPAALKTGYSLQGAPADVHARDLQAT FT AHGQVFTLTLPDGEVQIVTRLLGQHNISNLLLVAGALSKLGWPLPQIARELAAISPVDG FT RLQAVTPVPLQHLTAGAQGALVVVDYAHTPDALARALTALRPVAQARGGRLVCVFGCGG FT ERDPGKRPEMGRIAVERADRVVVTSDNPRSESPQDIIDQILAGIPAGMRAAVQPDRALA FT IMQTLWSAAPDDVILLAGKGHETYQDIGGRKLPFDDRQWARLALLLPHAGAVSTDTRRI FT GRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVADVALPQLVLGDTLAALGRMGT FT AWRSSFTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLATAGNFNNEIGVPLTLLRL FT RARHRAAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQEFMHTVEAVAHENGAVIG FT ALPEDGVAVYPGDEPYAAIWDKLAGARRVLRFGLQPGLDVYAERVVTQAHGTQCGVVTP FT AGSAGLDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAGFQAVAGRMQHRQMSDGT FT VLIDDTYNANPDSARAAIDVLARLPAPRALVLGDMGEVGDNGPAMHREVGDYAREHGID FT ALITLGEASRDAAHAFGPAARACASVDEVVAALRGLRPSSILIKGSRFMRMERVVTAFS FT GNNQAPSGQGDKHAA" FT misc_feature complement(90084..90821) FT /note="HMMPfam hit to PF01225, Mur ligase family, catalytic FT domain" FT misc_feature complement(91467..92240) FT /note="HMMPfam hit to PF01225, Mur ligase family, catalytic FT domain" FT misc_feature complement(92166..92237) FT /note="ScanRegExp hit to PS01011, Folylpolyglutamate FT synthase signature 1." FT CDS complement(92573..94303) FT /transl_table=11 FT /gene="ftsI" FT /gene_synonym="pbpB" FT /locus_tag="BP3028" FT /product="peptidoglycan synthetase precursor" FT /note="Similar to Escherichia coli peptidoglycan synthetase FT FtsI precursor or PbpB or B0084 or Z0094 or ECS0088 FT SW:FTSI_ECOLI (P04286) (588 aa) fasta scores: E(): 2.7e-79, FT 43.27% id in 550 aa, and to Neisseria gonorrhoeae FT penicillin-binding protein 2 PenA SW:PBP2_NEIGO (P08149) FT (581 aa) fasta scores: E(): 1.7e-86, 41.23% id in 553 aa" FT /db_xref="GOA:Q7VUP8" FT /db_xref="InterPro:IPR001460" FT /db_xref="UniProtKB/TrEMBL:Q7VUP8" FT /protein_id="CAE43299.1" FT /translation="MRRVPFFDNPVLRGQLPMWRARLVLILLFGGFVVLAGRALFLQGL FT STEFLQQQGERRYERTLTLAATRGKILDRNGVVLASSVPARAIWAIPEDAKPIPPEQVA FT ALAQLLQTPVAELRRRLADEDRNFVYLKRQVPMDVADKIKQMALPGIHQQPESRRYYPE FT GEVTAHIVGFNNVEDQGQEGVELTFNQQLSGQPGSRRVIKDRLGRVIEDVQAVTLPVDG FT RDLRLSIDTRLQYLVYKELQDARVAHQAKSATAVVIDVHTGEVLALVNLPSFDPNHRET FT FQVSTLRNQAITDTFEPGSIMKPFTAALALDLGRISTATMFETGNGRFQYQGSTISDVS FT RNGTLDLAGVLLKSSNIGMTMISEKLQSREMWDLFTGLGLGQAPQLGFPGAAPGRLRPW FT DRWRLIEKATIAYGYGLSVSLLQVARAYTVFARDGDMVSLTLVKRESAPTSVRVYNPKT FT AATVRAMLEAAAGPDGTKRAQVQGYRVAGKSGTARKIVDGKYSAQRHRSSFVGFAPVSN FT PKIVVAVSIDEPQVGGYYGGAIAAPVFSRIVGGSLRLMGVQPDAPFESTIVAGNPEGAR FT " FT misc_feature complement(92666..93613) FT /note="HMMPfam hit to PF00905, Penicillin binding protein FT transpeptidase domain" FT misc_feature complement(92837..92860) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(94178..94234) FT /note="1 probable transmembrane helix predicted for BP3028 FT by TMHMM2.0 at aa 23-42" FT CDS complement(94300..94578) FT /transl_table=11 FT /gene="ftsL" FT /locus_tag="BP3029" FT /product="putative cell division protein" FT /note="Similar to Escherichia coli cell division protein FT FtsL or MraR or B0083 or Z0093 or ECS0087 SW:FTSL_ECOLI FT (P22187) (121 aa) fasta scores: E(): 0.005, 29.11% id in 79 FT aa" FT /db_xref="GOA:Q7VUP7" FT /db_xref="InterPro:IPR011922" FT /db_xref="UniProtKB/TrEMBL:Q7VUP7" FT /protein_id="CAE43300.1" FT /translation="MGRISLIVAALLMLSAISLVTSRYQSRQLFIELGRSQAEARDLDT FT NWRRLQLERAELARNARIDRAARDDLKMIPIVPDRTLYMNQPAGGAQ" FT misc_feature complement(94516..94566) FT /note="1 probable transmembrane helix predicted for BP3029 FT by TMHMM2.0 at aa 4-21" FT CDS complement(94578..95672) FT /transl_table=11 FT /gene="mraW" FT /locus_tag="BP3030" FT /product="S-adenosyl-methyltransferase" FT /EC_number="2.1.1.-" FT /note="Similar to Escherichia coli hypothetical protein FT YabC or B0082 or Z0092 or ECS0086 SW:YABC_ECOLI (P18595) FT (313 aa) fasta scores: E(): 2.3e-52, 52.94% id in 289 aa, FT and to Neisseria meningitidis hypothetical protein NMA2074 FT TR:Q9JSY9 (EMBL:AL162758) (328 aa) fasta scores: E(): FT 2.7e-59, 58.74% id in 303 aa" FT /db_xref="GOA:Q7VUP6" FT /db_xref="InterPro:IPR002903" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUP6" FT /protein_id="CAE43301.1" FT /translation="MEFEHRPVLLEPTVDALVLPDFGGKGAHRQAGEPGPDAATRLQHG FT VFVDGTFGRGGHSRALLARLGAQARLVVFDKDPQAIAVARELAAGDGRVEVVHGGFATM FT AEELTARGIEQVDGVMLDLGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVADWLAQ FT ASVDEMREVIADYGEERFAFQVAKAIAACRATRPLHTTLQLAECVAGAVRTREKGQHPA FT TRTFQALRIYINRELEELARALASALDLLGPGGRLAVISFHSLEDRMVKQCIAAAARPA FT AAHARLPLRESELPQPLVRSLGKVVADDVEVAGNARARSAILRVAERTGEPLPPGGGAG FT FVKAGRVPGEPVRGTRAGSKGRRR" FT misc_feature complement(94686..95666) FT /note="HMMPfam hit to PF01795, MraW methylase family" FT CDS complement(95681..96109) FT /transl_table=11 FT /gene="mraZ" FT /locus_tag="BP3031" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli hypothetical protein FT YabB or B0081 SW:YABB_ECOLI (P22186) (152 aa) fasta scores: FT E(): 1e-19, 43.7% id in 135 aa, and to Neisseria FT meningitidis hypothetical protein NMA2075 TR:Q9JSY8 FT (EMBL:AL162758) (151 aa) fasta scores: E(): 3.2e-10, 32.87% FT id in 146 aa" FT /db_xref="InterPro:IPR003444" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUP5" FT /protein_id="CAE43302.1" FT /translation="MFQGSSALTLDAKGRISIPTRHRDALMDRAEGRLTLTRHPDGCLL FT VYPRPEWEEKRAQIAAFPMSARALQRLLLGNAQDVDIDGSGRVLIAPELRNASGMTRDV FT MLLGMGAHFELWDAASLARREAEDLAQGMPDVLNQFSF" FT misc_feature complement(95699..95893) FT /note="HMMPfam hit to PF02381, Domain of unknown function FT UPF0040 family" FT misc_feature complement(95894..96109) FT /note="HMMPfam hit to PF02381, Domain of unknown function FT UPF0040 family" FT misc_RNA complement(96392..96805) FT /note="RNAseP" FT CDS 96912..98720 FT /transl_table=11 FT /locus_tag="BP3034" FT /product="putative ABC transporter ATP-binding protein" FT /note="Similar to Escherichia coli ABC transporter FT ATP-binding protein Uup or B0949 SW:UUP_ECOLI (P43672) (635 FT aa) fasta scores: E(): 9.7e-71, 46.03% id in 630 aa, and to FT Caulobacter crescentus holdfast attachment protein C HfaC FT or CC2631 SW:HFAC_CAUCR (Q45978) (608 aa) fasta scores: FT E(): 2.7e-62, 42.88% id in 611 aa" FT /db_xref="GOA:Q7VUP4" FT /db_xref="HSSP:1US8" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VUP4" FT /protein_id="CAE43303.1" FT /translation="MALASLITLTDVQLAYGHHPLLDHADFAIQEGERIGLIGRNGAGK FT SSLLRLLDGRTQPDDGDIARSSGLRVATVEQEPALDETGTVFDVVCDAHAHPEDWQRPA FT RVRAALERLGLPAEAAIASLSGGMRKRVALARALVDEPDLLLLDEPTNHLDFDGIAWLE FT AMLRNWKGAAVIITHDRRFLDAVATRIVELDRGRLLSFPGNFSQWQERKAQWLEAERLE FT QARFDKLLAQEEVWIRKGIEARRTRNEGRVRRLEQLRVERAERRERVGNVSLALAQGQR FT SGKLVAELQDVGKAFGDKVVVHDYSTTILRGDRIGIVGPNGAGKTTLLKLLLGELPPDS FT GTARQGSNVSVAYFDQMRAQLDENATLVDIISPGSEWVEIGGARKHVMSYLGDFLFSPA FT RAGSPVSSLSGGERARLLLARLFARPANVLVLDEPTNDLDIETLELLEELLQEYAGTVL FT LVSHDRAFLNNVVTQTIAAEGDGRWRDYVGGYDEWQAQRPAQAAAPKAEKPAETAKPAA FT ARPKPVRAARLSAWDLRELEALPDAIATIEARQAELSGKLADGSLYRDAPDEVERINAE FT LATLESELEEKFARWELLEARRGDSA" FT misc_feature 97005..97499 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 97026..97049 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 97281..97325 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 97845..98354 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 97866..97889 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 98133..98177 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature." FT CDS complement(98760..99839) FT /transl_table=11 FT /gene="pyrC" FT /locus_tag="BP3035" FT /product="dihydroorotase" FT /EC_number="3.5.2.3" FT /note="Similar to Escherichia coli dihydroorotase PyrC or FT B1062 SW:PYRC_ECOLI (P05020) (347 aa) fasta scores: E(): FT 1e-70, 56.43% id in 342 aa, and to Pseudomonas aeruginosa FT dihydroorotase PyrC or PA3527 SW:PYRC_PSEAE (P72170) (348 FT aa) fasta scores: E(): 8e-79, 60.29% id in 345 aa" FT /db_xref="GOA:Q7VUP3" FT /db_xref="HSSP:1J79" FT /db_xref="InterPro:IPR004721" FT /db_xref="UniProtKB/TrEMBL:Q7VUP3" FT /protein_id="CAE43304.1" FT /translation="MRPASMSNQHATELTITRPDDWHLHLRDGSALEAVVLDTARQFAR FT AIVMPNLRPPVTTTEQALVYRARIEAALRKAGGDTAAFTPLMTLYLTDNTPAEEIVRAH FT ESGQVAAVKLYPAGATTNSDAGVTDLLGKCGAALAALERCGMPLLVHGEVTDPAIDVFD FT REAVFIERVMQPLRRAYPGLKVVFEHITTREGAHYVRDAEGPTAATITPQHMLYNRNAI FT FTGGVRPHWYCLPILKREVHRQALVEAATSGSPRFFLGTDSAPHARGLKEHACGCAGCY FT TALHAMELYATAFDAVGRLDRLEGFASFHGPDFYGLPRNTGTLTLRREAYEIPAEVAFG FT DTTLVPLSGGESLGWRALA" FT misc_feature complement(99027..99062) FT /note="ScanRegExp hit to PS00483, Dihydroorotase signature FT 2. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(99753..99779) FT /note="ScanRegExp hit to PS00482, Dihydroorotase signature FT 1. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(99836..101029) FT /transl_table=11 FT /locus_tag="BP3036" FT /product="putative hydrolase" FT /note="Similar to Rhizobium meliloti putative hippurate FT hydrolase protein TR:CAC45132 (EMBL:AL591784) (389 aa) FT fasta scores: E(): 1.6e-72, 52.52% id in 377 aa" FT /db_xref="GOA:Q7VUP2" FT /db_xref="InterPro:IPR010168" FT /db_xref="UniProtKB/TrEMBL:Q7VUP2" FT /protein_id="CAE43305.1" FT /translation="MYARSPLESIRLFHDELTALRRDLHAHPELGFEEVRTSGIVAGAL FT EALGIEVHRGIGKTGVVGVIRGRTCDSGRMIGLRADMDALPMTEDNDFGHKSTKPGLMH FT GCGHDGHTAVLIGAAKYLAQTRNFDGTAVLIFQPAEEGRGGAKAMIDDGLFDTFPCDAI FT YALHNWPGLKPGTVGINPGPMMAAADRFEITINGRGGHGAHPYQTIDPVTVAGHLITAL FT QTIVSRNVNPLDSAVLSIGSVQAGHPGAMSVIPREARMVGTVRTFRRSVQEMVESRMRE FT LASAIASAFGATAEVLYERIYPATLNTPQHANLVADIATEMIGRENVVRDLVPSMGSED FT FSFMLQMRPGAYFRLGQGGAESGCVLHNSHFDFNDAVIPLGSAMFSALAERGMPLAD" FT misc_feature complement(100016..100990) FT /note="HMMPfam hit to PF01546, Peptidase family FT M20/M25/M40" FT CDS 101179..101457 FT /transl_table=11 FT /locus_tag="BP3037" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia muridarum hypothetical protein FT TC0745 TR:Q9PJT3 (EMBL:AE002343) (86 aa) fasta scores: E(): FT 5.8e-15, 54.21% id in 83 aa" FT /db_xref="InterPro:IPR019835" FT /db_xref="UniProtKB/TrEMBL:Q7VUP1" FT /protein_id="CAE43306.1" FT /translation="MATPSKTATARKPNAAFMKPLTPSAELAAVIGSEAVPRTEVTKKI FT WDYIKKHNLQDASNKRNINADAKLRPIFGKDQVTMFELTKLVNAHLK" FT misc_feature 101227..101454 FT /note="HMMPfam hit to PF02201, BAF60b domain of the SWIB FT complex" FT CDS complement(101786..>102157) FT /transl_table=11 FT /locus_tag="BP3038" FT /product="putative membrane protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein CC0411 TR:Q9AB23 (EMBL:AE005714) (132 aa) fasta FT scores: E(): 0.00047, 32.77% id in 119 aa, and to the FT C-terminal region of Neisseria meningitidis putative FT DnaJ-family protein NMA1461 TR:Q9JU75 (EMBL:AL162756) (240 FT aa) fasta scores: E(): 5e-07, 33.61% id in 119 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VUP0" FT /protein_id="CAE43307.1" FT /translation="VIVSDPQTLQPGGAPDLRTLTHVAYGLYALGFLTGGFLGIATLAA FT VVLMYVKRGDTAGTMYASHFDWLLRTFWWALLWLAISAIATLIFIGWIGVVATVVWVLY FT RLIKGWLALLEGNAPSSYT" FT misc_feature complement(join(101846..101941,102005..102070)) FT /note="2 probable transmembrane helices predicted for FT BP3038 by TMHMM2.0 at aa 29-51 and 72-104" FT rRNA complement(102742..102856) FT /note="5S rRNA" FT rRNA complement(103031..105912) FT /note="23S rRNA" FT tRNA complement(106227..106302) FT /note="tRNA Ala anticodon TGC, Cove score 88.49" FT tRNA complement(106323..106399) FT /note="tRNA Ile anticodon GAT, Cove score 93.29" FT rRNA complement(106497..108028) FT /note="16S rRNA" FT CDS complement(108903..109391) FT /transl_table=11 FT /gene="lrp" FT /gene_synonym="alsB" FT /gene_synonym="livR" FT /gene_synonym="ihb" FT /gene_synonym="oppI" FT /locus_tag="BP3039" FT /product="leucine-responsive regulatory protein" FT /note="Similar to Escherichia coli, leucine-responsive FT regulatory protein Lrp or AlsB or LivR or Ihb or OppI or FT B0889 or Z1234 or ECD0974 SW:LRP_ECOLI (P19494) (163 aa) FT fasta scores: E(): 3.6e-23, 44.23% id in 156 aa, and to FT Neisseria meningitidis putative AsnC-family transcriptional FT regulator NMA0756 TR:Q9JVP4 (EMBL:AL162754) (160 aa) fasta FT scores: E(): 4.1e-25, 46.15% id in 156 aa" FT /db_xref="GOA:Q7VRX9" FT /db_xref="InterPro:IPR019888" FT /db_xref="UniProtKB/TrEMBL:Q7VRX9" FT /protein_id="CAE43308.1" FT /translation="MGLMMLGVELDRTDRRILAELQRDGRLSNQELAERVSLSPSPCLR FT RVRRLEEQGYIKRYVALVDAEKVGLGLLAYVTIKLNKHSGGSHAPMGNFARDVQLWPEV FT VECYAMSGDMDYLLRIQVADLAHFSRFAMDTLMQHPAVVDMKSYFALQQIKETTELRI" FT misc_feature complement(108972..109292) FT /note="HMMPfam hit to PF01037, AsnC family" FT misc_feature complement(109248..109313) FT /note="Predicted helix-turn-helix motif with score 1238 FT (+3.40 SD) at aa 27-48, sequence LSNQELAERVSLSPSPCLRRVR" FT CDS 109532..110644 FT /transl_table=11 FT /gene="bllY" FT /locus_tag="BP3040" FT /product="putative hemolysin" FT /note="Similar to Vibrio vulnificus hemolysin VllY FT SW:VLLY_VIBVU (O06695) (357 aa) fasta scores: E(): 9.6e-47, FT 56.78% id in 361 aa, and to Pseudomonas aeruginosa FT 4-hydroxyphenylpyruvate dioxygenase Hpd or PA0865 TR:Q9I576 FT (EMBL:AE004521) (357 aa) fasta scores: E(): 6.5e-54, 57.61% FT id in 361 aa" FT /db_xref="GOA:Q7VUN9" FT /db_xref="HSSP:1CJX" FT /db_xref="InterPro:IPR005956" FT /db_xref="UniProtKB/TrEMBL:Q7VUN9" FT /protein_id="CAE43309.1" FT /translation="MAENFQPWENPMGTAGFEFIEYTAPDPVALRKVFELLGFKAIAKH FT RHKDVTLYRQGGVNFLINAKPDSFAQRFARLHGPSICAIGFRVQDANKAYKRALELGAW FT GCDSHSGPMELNIPAIKGIGDSLIYLVDRWRGKQGHGGIGDISIYDVDFEPIDRDTAQT FT DLNHTGAGLTLVDHLTHNVHKGRMAEWSEFYERLFNFREIRYFDIEGKVTGVKSKAMTS FT PCGNIRIPINEEGTEEKGQIQEYLDLYRGEGIQHIAMATDDIYQTVEALRRNGVVFLDT FT PDTYYELLDRRLPDHGEDVTRLRKNRILLDGAPGGGLLLQIFTENQIGPIFFEIIQRKD FT NDGFGEGNFKALFESIELDQMRRGVVKQVD" FT misc_feature 110090..110449 FT /note="HMMPfam hit to PF00903, Glyoxalase/Bleomycin FT resistance protein/Dioxygenase superfamily" FT CDS complement(110712..111272) FT /transl_table=11 FT /locus_tag="BP3041" FT /product="putative methionine sulfoxide reductase" FT /note="Similar to Treponema pallidum peptide methionine FT sulfoxide reductase MsrA or TP0633 SW:MSRA_TREPA (O83641) FT (291 aa) fasta scores: E(): 2.2e-25, 45.75% id in 153 aa, FT and to Bacillus subtilis peptide methionine sulfoxide FT reductase MsrA SW:MSRA_BACSU (P54154) (177 aa) fasta FT scores: E(): 4.5e-22, 41.61% id in 149 aa" FT /db_xref="GOA:Q7VUN8" FT /db_xref="HSSP:1FF3" FT /db_xref="InterPro:IPR002569" FT /db_xref="UniProtKB/TrEMBL:Q7VUN8" FT /protein_id="CAE43310.1" FT /translation="MSSSQPAGAATEAAVLGGGCFWCVEAVFKDLRGVTGIEPGYAGGH FT VEHPTYEQVCGKDTGHIEVARVEFDPAVLSYGDLLRVFFATHDPTTPGRQGNDVGPQYE FT SAIFWQDERQREQAQAVMDELRAQQVFDAPIVTRLLAPAKFWPAEDYHRDYYALHPEQG FT YCQFVIAPKVAKFRKQFQDRLAR" FT misc_feature complement(110766..111239) FT /note="HMMPfam hit to PF01625, Peptide methionine sulfoxide FT reductase" FT CDS complement(111296..111628) FT /transl_table=11 FT /gene="cyt" FT /locus_tag="BP3042" FT /product="cytochrome c-552 precursor" FT /note="Similar to Nitrosomonas europaea Cytochrome c-552 FT precursor Cyt SW:C552_NITEU (P95339) (103 aa) fasta scores: FT E(): 8.4e-16, 53.46% id in 101 aa" FT /db_xref="GOA:Q7VUN7" FT /db_xref="HSSP:1A56" FT /db_xref="InterPro:IPR009056" FT /db_xref="UniProtKB/TrEMBL:Q7VUN7" FT /protein_id="CAE43311.1" FT /translation="MHLKSSLAAWAVLACLAGGSAGAQPAGEALARNKNCMACHQVDSK FT RVGPPLRSISERYAGQSEAAAYLAGKIRGGGRGAWGAVPMPAQPQVSDADAHALAEWIL FT SLPAKP" FT misc_feature complement(111308..111565) FT /note="HMMPfam hit to PF00034, Cytochrome c" FT misc_feature complement(111506..111523) FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT misc_feature complement(111560..111628) FT /note="Signal peptide predicted for BP3042 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.968 between residues 23 and 24" FT misc_feature complement(111584..111616) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(111612..113300) FT /transl_table=11 FT /gene="ilvD" FT /locus_tag="BP3043" FT /product="dihydroxy-acid dehydratase" FT /EC_number="4.2.1.9" FT /note="Similar to Lactococcus lactis dihydroxy-acid FT dehydratase IlvD SW:ILVD_LACLA (Q02139) (570 aa) fasta FT scores: E(): 5.1e-94, 47.13% id in 558 aa, and to Bacillus FT subtilis dihydroxy-acid dehydratase IlvD SW:ILVD_BACSU FT (P51785) (557 aa) fasta scores: E(): 7.9e-87, 43.08% id in FT 557 aa. Also similar to BP0289, 36.661% identity (40.653% FT ungapped) in 611 aa overlap." FT /db_xref="GOA:Q7VUN6" FT /db_xref="InterPro:IPR000581" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUN6" FT /protein_id="CAE43312.1" FT /translation="MSDNNRSRHITEGVARAPNRAMYYALGYTEADFQNPMIGVANGHS FT TITPCNSGLQRLADAAIEAIRVSRANPQVFGTPTISDGMSMGTEGMKYSLVSREVIADC FT IETAAQGQWMDGVVVIGGCDKNMPGGMMALARMNVPGIYVYGGTIKPGHYKGKDLTIVS FT VFEAVGEYTMGRMDETDFKAIEQCAIPGSGSYGGMYTANTMSSAFEAMGMSLPYSSTMA FT NEDQEKVASAAESARVLVEAVRRQLRPRDIITLASIENAVAVIMATGGSTNAVLHFLAI FT AHAAEVPWNIDDFERIRKRVPVICDLKPSGRYVATDLHRAGGIPQVMKILLNAGLLHGD FT CITITGKTVAETLANVPDAPPPGQDVIMPIERALYPQGHLAILKGNLSPEGCVAKITGL FT KNPVITGPARVFDSEDDAMAAIMDRRIRDGDVVVIRYEGPKGGPGMREMLAPTSALVGQ FT GLGETVGLITDGRFSGGTWGMVVGHVAPEEFVGGPIALIREGDSVTIDAHQLLLLLLNI FT SDEEMAARRKAWAQPKPRYVRGVLAKFGKLACTASRGAVTDAFEE" FT misc_feature complement(111753..113102) FT /note="HMMPfam hit to PF00920, Dehydratase family" FT misc_feature complement(111873..111908) FT /note="ScanRegExp hit to PS00887, Dihydroxy-acid and FT 6-phosphogluconate dehydratases signature 2." FT misc_feature complement(112902..112934) FT /note="ScanRegExp hit to PS00886, Dihydroxy-acid and FT 6-phosphogluconate dehydratases signature 1." FT CDS 113420..114208 FT /transl_table=11 FT /gene="lgt" FT /gene_synonym="umpA" FT /locus_tag="BP3044" FT /product="prolipoprotein diacylglyceryl transferase" FT /EC_number="2.4.99.-" FT /note="Similar to Escherichia coli prolipoprotein FT diacylglyceryl transferase Lgt or UmpA or B2828 or Z4145 or FT ECS3685 SW:LGT_ECOLI (P37149) (291 aa) fasta scores: E(): FT 2e-37, 53.4% id in 279 aa" FT /db_xref="GOA:Q7VUN5" FT /db_xref="InterPro:IPR001640" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUN5" FT /protein_id="CAE43313.1" FT /translation="MLQYPQIDPVALRIGPLAIHWYGLMYLIGFALVYAFGRRRITSGH FT TTSMTVRDLEDLIFYSVLGVVLGGRLGYVLFYKPAHYLANPLEIFYLWEGGMSFHGGLI FT GVIVVMLLFAHKKRLGFFTVSDFIAPLIPLGLAAGRLGNFINGELWGRPTDVPWAMIFP FT QSGDGLPRHPSQLYELGLEGIVLFALLWWYSSKPRAAGQVSAMFLMGYGAFRFLVEFTR FT EPDNFLGLLAAGLSMGQWLSIPMVLAGAGLYLFTARPPSR" FT misc_feature 113435..114196 FT /note="HMMPfam hit to PF01790, Prolipoprotein FT diacylglyceryl transferase" FT misc_feature join(113462..113530,113588..113647,113690..113758, FT 113777..113845,113945..113998,114017..114073, FT 114116..114184) FT /note="7 probable transmembrane helices predicted for FT BP3044 by TMHMM2.0 at aa 15-37, 57-76, 91-113, 120-142, FT 176-193, 200-218 and 233-255" FT misc_feature 113834..113872 FT /note="ScanRegExp hit to PS01311, Prolipoprotein FT diacylglyceryl transferase signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS complement(join(114183..114818,115868..116002)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3045" FT /product="putative exported protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Pseudomonas aeruginosa FT hypothetical protein PA4495 TR:Q9HVS6 (EMBL:AE004863) (236 FT aa) fasta scores: E(): 9.3e-17, 34.08% id in 223 aa." FT /db_xref="PSEUDO:CAE43314.1" FT repeat_region 114814..114845 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 114814..115866 FT CDS 114916..115866 FT /transl_table=11 FT /locus_tag="BP3046" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTC0" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTC0" FT /protein_id="CAE43315.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN" FT misc_feature 115174..115239 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 115297..115830 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(115835..115866) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(116311..116622) FT /transl_table=11 FT /locus_tag="BP3047" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis (serogroup A) FT hypothetical protein NMA0377 or NMB2058 TR:Q9JRG6 FT (EMBL:AL162753) (101 aa) fasta scores: E(): 3.7e-05, 35.05% FT id in 97 aa" FT /db_xref="GOA:Q7VUN4" FT /db_xref="InterPro:IPR007838" FT /db_xref="UniProtKB/TrEMBL:Q7VUN4" FT /protein_id="CAE43316.1" FT /translation="MERVDVTILGRDYSLACSAEEKPVLMAAVRHVDQLMLRIQGSGKV FT SSNERIAVMAALQVAGELLAMKAPDGPLGGLAVGDFKRRIEEMNLMLDDALSGQEKLL" FT CDS complement(116622..117152) FT /transl_table=11 FT /locus_tag="BP3048" FT /product="hypothetical protein" FT /note="Low similarity to N-teminal region of Mycobacterium FT tuberculosis hypothetical protein RV2229c or MT2288 or FT MTCY427.10c SW:YM29_MYCTU (Q10513) (245 aa) fasta scores: FT E(): 0.32, 30.51% id in 154 aa" FT /db_xref="HSSP:1JNM" FT /db_xref="UniProtKB/TrEMBL:Q7VUN3" FT /protein_id="CAE43317.1" FT /translation="MQVLPNIAVFLSLREEARSVPGWFTIAPMLQDLDQLAARIGQLVQ FT RTRHLHAERDALRVRLNDSESEQRKLKQRCADFETELQALQARLREHDGATATQLAEAQ FT QTEVALREQLAREAAERQALESRVSAREAELQGNLRARDTDLQRLRVAASTARERIDAV FT LARLPGAPAGEQP" FT repeat_region 117213..117244 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 117213..118265 FT CDS 117315..118265 FT /transl_table=11 FT /locus_tag="BP3049" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA4" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA4" FT /protein_id="CAE43318.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 117573..117638 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 117696..118229 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(118234..118265) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 118555..119019 FT /transl_table=11 FT /locus_tag="BP3050" FT /product="putative membrane protein" FT /note="Similar to Agrobacterium tumefaciens AGR_C_182p FT TR:AAK85937 (EMBL:AE007953) (153 aa) fasta scores: E(): FT 2.8e-11, 35.33% id in 133 aa" FT /db_xref="InterPro:IPR009936" FT /db_xref="UniProtKB/TrEMBL:Q7VUN2" FT /protein_id="CAE43319.1" FT /translation="MQLRNRQDFWSGVMFIVLGLGFSWQASSYQMGTAARMGPGYFPFW FT LGLVLALLGAIVLISALSKKATETAVEGFDWRIVFLVVGSVVLYALILKPLGVYLSVFI FT LVVVSSLASHEFSWKVAVANGIFLVVFSYLAFIKGLGLIFPLWPSFLGMN" FT misc_feature 118555..118638 FT /note="Signal peptide predicted for BP3050 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.814) with cleavage site FT probability 0.534 between residues 28 and 29" FT misc_feature join(118579..118632,118675..118743,118780..118833, FT 118843..118908,118927..118995) FT /note="5 probable transmembrane helices predicted for FT BP3050 by TMHMM2.0 at aa 9-26, 41-63, 76-93, 97-118 and FT 125-147" FT CDS 119034..120539 FT /transl_table=11 FT /locus_tag="BP3051" FT /product="putative membrane protein" FT /note="Similar to Agrobacterium tumefaciens Agr_c_184p FT TR:AAK85938 (EMBL:AE007953) (501 aa) fasta scores: E(): FT 5.5e-122, 65.86% id in 501 aa, and to Rhizobium meliloti FT conserved hypothetical protein SMB20027 TR:CAC48430 FT (EMBL:AL603642) (501 aa) fasta scores: E(): 1.1e-121, FT 65.26% id in 501 aa. Also similar to BP3869, 42.886% FT identity (43.776% ungapped) in 492 aa overlap." FT /db_xref="InterPro:IPR002823" FT /db_xref="UniProtKB/TrEMBL:Q7VUN1" FT /protein_id="CAE43320.1" FT /translation="MELFDNLMLGFSVAFTPENLAYALLGCILGTLIGVLPGIGPVPTI FT AMLLPITYVLPPVAGLIMLAGIYYGAQYGGSTTTILVALPGETSAVVTVLDGHQMARNG FT RAGAALAIAALGSFFAGCVATLLLAAFAPPLAEVSFKFGPAEYFSLMVLGLVGAVVLAS FT GSLPKAIAMIILGLLLGMVGTDVNSGVARYDFGIPELQDGIDFAIVAMGVFGFAEIMTN FT LEQKENRVDITDKIGSLYPNFQEFKEAAPAVVRGTALGSALGILPGGGAVLSSFASYTL FT EKKISKNPERFGKGHPAGLAGPESANNAAAQTSFIPLLTLGIPGNAVMALMVGAMTIHN FT IQPGPQVMTSHPELFWGLIASMWIGNLMLVVLNLPLIGLWVKLLKVPYRILFPAILVFC FT TIGVYSLNYNTFDIFMTAAFGVVGYVWAKLKCEGAPLLLGLVLGPMMEENFRRALLLSR FT GDFSTFVTRPLSATLLAVALFLVVLVALPAIRKKREETFVEEE" FT misc_feature 119088..120347 FT /note="HMMPfam hit to PF01970, Integral membrane protein FT DUF112" FT misc_feature join(119091..119159,119172..119240,119250..119318, FT 119355..119423,119466..119519,119538..119606, FT 119649..119702,119982..120050,120108..120176, FT 120189..120257,120423..120491) FT /note="11 probable transmembrane helices predicted for FT BP3051 by TMHMM2.0 at aa 20-42, 47-69, 73-95, 108-130, FT 145-162, 169-191, 206-223, 317-339, 359-381, 386-408 and FT 464-486" FT CDS 120793..122400 FT /transl_table=11 FT /locus_tag="BP3052" FT /product="putative gamma-glutamyltranspeptidase" FT /EC_number="2.3.2.2" FT /note="Similar to Mycobacterium tuberculosis CDC1551 FT gamma-glutamyltransferase MT0797 TR:AAK45039 FT (EMBL:AE006970) (512 aa) fasta scores: E(): 4.2e-112, FT 56.73% id in 520 aa, and to Pseudomonas sp acylase AcyI FT SW:PAC1_PSES3 (P15557) (557 aa) fasta scores: E(): 5.3e-37, FT 33.03% id in 557 aa" FT /db_xref="GOA:Q7VUN0" FT /db_xref="InterPro:IPR000101" FT /db_xref="UniProtKB/TrEMBL:Q7VUN0" FT /protein_id="CAE43321.1" FT /translation="MMKFDWNNPYPSTRIPVFARNVVATSHPLAAQAGLRILALGGNAA FT DAAVASAATLALVEPASNGLGSDCFALVWDGARLHGLNASGTAPAAWSPGYFQRKHQGA FT IPLRGWDSVTIPGCVAGWASLHDKLGSLPFADVLAPAIEYAERGFAVPPTVQRRWADQV FT DPLRSLPGFAEHFLPHGRAPEVGEHFVLAGAAATLRRIAASGGRDFYEGETAQKLVAHA FT QAHEAALTLGDLRDYAPQWVEPISQAYRGHALHQLPPNGQGLAALIALGIVEHFDLASR FT PAEHPDTQHILIEAMKLAFADVHAHVADAAHIRIRVEQLLDPAYLAERARLIDLRRARV FT YNAAQAPQGGTVYLACADRNGMMVSFTQSNYMGFGSGIVVPGTGISLQNRGCCFSMDPD FT HPNVVGGGKRPFHTGIPAFLTQDGAPLMSFGIMGGNMQPQGHLQALVRMLDYRQQPQAA FT CDAPRWKWNRGLSVDIEAAMPAQVTDALRARGHIVEVAAPADKDFGSGQFIWRLGDPAV FT DGYVAASDSRRDGLAAGF" FT misc_feature 120895..122385 FT /note="HMMPfam hit to PF01019, FT Gamma-glutamyltranspeptidase" FT misc_feature 121357..121401 FT /note="ScanRegExp hit to PS00104, EPSP synthase signature FT 1." FT CDS 122528..123361 FT /transl_table=11 FT /locus_tag="BP3053" FT /product="putative oxidoreductase" FT /note="Similar to Escherichia coli FT 2-hydroxy-3-oxopropionate reductase GlxR SW:GLXR_ECOLI FT (P77161) (292 aa) fasta scores: E(): 4.5e-25, 34.54% id in FT 275 aa, and to Rhizobium meliloti putative oxidoreductase FT protein SMC00133 TR:CAC46456 (EMBL:AL591788) (289 aa) fasta FT scores: E(): 2.1e-70, 69.56% id in 276 aa. CDS is truncated FT at the N-terminus in comparison to similar proteins. FT Similarity extends beyond the predicted translational FT start, however no start codons exsist" FT /db_xref="GOA:Q7VUM9" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VUM9" FT /protein_id="CAE43322.1" FT /translation="MGLPMAGHLARAGHQVTVYNRTAAKAQAWAAEFGGKAAATPREAA FT AGAQIVFCCVGNDDDLRSVVLGADGAFAGMQAGAVFVDHTTASADVARELYAAARELNL FT QFIDAPVSGGQAGAVNGALTIMCGGDSATFEDIKPVAHAFGRAVTLVGPPGAGQLAKMV FT NQVCIAGVVQGLSEAIAFGQTAGLDMKLVLDVISKGAAQSWQMENRGATMVDDQFDFGF FT AVDWMRKDLGLVLAEARNNGARLPLTALVDQFYGDVQKMGGNRWDTSSLIKRLRD" FT CDS complement(123410..123799) FT /pseudo FT /transl_table=11 FT /gene="acpD'" FT /locus_tag="BP3054" FT /product="C-terminal region of acyl carrier protein FT phosphodiesterase (Pseudogene)" FT /EC_number="3.1.4.14" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. This CDS is the C-terminal region of FT BP0497. Similar to the C-terminal region of Escherichia FT coli acyl carrier protein phosphodiesterase AcpD FT SW:ACPD_ECOLI (P41407) (200 aa) fasta scores: E(): 3.5e-18, FT 50.84% id in 118 aa. Putative N-terminal region of the FT pseudogene is BP0497" FT CDS complement(123802..124752) FT /transl_table=11 FT /locus_tag="BP3055" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q84CT8" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q84CT8" FT /protein_id="CAE43324.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT repeat_region 123802..123833 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(123802..124854) FT misc_feature complement(123838..124371) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(124823..124854) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 124891..125643 FT /transl_table=11 FT /gene="ung" FT /locus_tag="BP3056" FT /product="uracil-DNA glycosylase" FT /EC_number="3.2.2.-" FT /note="Similar to Escherichia coli uracil-DNA glycosylase FT Ung or B2580 SW:UNG_ECOLI (P12295) (228 aa) fasta scores: FT E(): 6.7e-33, 48.62% id in 218 aa" FT /db_xref="GOA:Q7VUM8" FT /db_xref="InterPro:IPR005122" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUM8" FT /protein_id="CAE43325.1" FT /translation="MPNDNRLAPAALAAQAAALPAAWRHVLEQPAVARAFASVLGHVEQ FT RLAEGAVVYPAAPFRALDQLAPADVRVVILGQDPYHGPGQAQGLAFSVPDDCKCPPSLR FT NIFNEIAVDYPRPTRHDLSAWTRQGVLLLNTSLTVEDGQPGSHAKRGWETVTDALIAEV FT ARDPSPKVFLLWGAHAQAKQALVPADAGHLVLAANHPSPLSARRPPVPFVGCGHFRQTN FT AWLQQRGQKPVDWSGEQNNASRQGEFAL" FT misc_feature 125065..125595 FT /note="HMMPfam hit to PF00315, Uracil-DNA glycosylase" FT misc_feature 125101..125130 FT /note="ScanRegExp hit to PS00130, Uracil-DNA glycosylase FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 125882..127606 FT /transl_table=11 FT /locus_tag="BP3057" FT /product="putative ATP-dependent RNA helicase" FT /note="Similar to Escherichia coli putative ATP-dependent FT RNA helicase RhlE SW:RHLE_ECOLI (P25888) (454 aa) fasta FT scores: E(): 9.2e-52, 43.36% id in 475 aa, and to FT Escherichia coli cold-shock DeaD-box protein A DeaD FT SW:DEAD_ECOLI (P23304) (628 aa) fasta scores: E(): 2.1e-47, FT 40.5% id in 511 aa. CDS contains an imperfect internal FT repeat (hexamer x15), residues 423 to 542. Similarity in FT the repeat region is poor" FT /db_xref="GOA:Q7VUM7" FT /db_xref="HSSP:1HV8" FT /db_xref="InterPro:IPR014001" FT /db_xref="UniProtKB/TrEMBL:Q7VUM7" FT /protein_id="CAE43326.1" FT /translation="MHMRRYMRQGKAMSFEDLGLAPTILSALSEAGFTEPTSVQAAAIP FT QAMAGADLMVSSQTGSGKTAAFMLPALNRIAHQPGNKGVGVQVLVLTPTRELALQVADA FT TASYGRNLPGLRTATVVGGMPYGAQLKALSRRVDVLVATPGRLIDHLKAGRVKLNTVHT FT LVLDEADRMLDMGFIEDIETIIERLPKERQTLLFSATLDGSVARLAERMMREPQRIEIA FT GHRQKHANITQSLLYADDAAHKMRLLDHVLRDARLDQAIVFTATKRGADDLADRLADQG FT FAAAALHGDMNQRQRTRTLGQLQRGQLRVLVATDVAARGIDVQGISHAVNFDLPLQAED FT YVHRIGRTGRAGRDGQAFTLATHAERHKVRRIEHYIGQSINAEVIAGLEPQRTPRPSTG FT GPRRGGKPMGGKRPGGYGAPREFGDRPQRPYGDRPQRDFGDRPQRDASDRPQRSFGDRP FT QRDFGDRPQRPYGDRPQRDFGDRPQRDFGDRPQRPYGDRPQRDFGDRPQRSFGDRPQRD FT VGDRPQRDFGDRPQRSFGDHPQREGGWHGAPREGRSFDKRPGGPAKRFAKPAAPRRG" FT misc_feature 125882..126004 FT /note="Signal peptide predicted for BP3057 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.742) with cleavage site FT probability 0.697 between residues 41 and 42" FT misc_feature 125957..126583 FT /note="HMMPfam hit to PF00270, DEAD/DEAH box helicase" FT misc_feature 126374..126400 FT /note="ScanRegExp hit to PS00039, DEAD-box subfamily FT ATP-dependent helicases signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 126692..126937 FT /note="HMMPfam hit to PF00271, Helicase conserved FT C-terminal domain" FT repeat_region 127145..127480 FT /note="14x degenerate repeat: (F/Y/A/V)(G/S)DRPQR(P/D/S) FT translated in BP3057" FT CDS 127626..128885 FT /transl_table=11 FT /locus_tag="BP3058" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein NMA2076 TR:Q9JSY7 (EMBL:AL162758) (405 aa) fasta FT scores: E(): 2.8e-46, 40.49% id in 405 aa" FT /db_xref="InterPro:IPR003788" FT /db_xref="UniProtKB/TrEMBL:Q7VUM6" FT /protein_id="CAE43327.1" FT /translation="MRRGPARAAALHRAFSLHGKIAVMQRPASSSLPPLDPAASAHSAS FT VARHLRAAIAAAGGWLPFSQWMSAALYAPGLGYYTAGATKLASPADAQGPALPAGDFVT FT APELTPLFAATVARQVAQVLRATDTASVLEFGAGTGALAEGVLRALAGMDCPARYLIVE FT VSADLRQRQQSRLAPFGDRVQWLDQLPDAFAGCVLGNEVLDAMPATLFRWSETGTVQER FT GVTVDADGAFAWQDRDADAPLAQAVAQRMPPLPGYVSEINLQAEAWVRGMGLWLQRGAA FT LLLDYGFPRSEYYHPQRAGGTLMCHLRHHAHADPFVAPGLQDITSHVDFTAMADAALAG FT GLQVLGYLSQARFLVNAGLLDALSQLDPADARAYAQAVAPVQKLLSEAEMGELFKVLAV FT GRDMPEPLLGFARGDRRGTL" FT misc_feature 127800..128828 FT /note="HMMPfam hit to PF02636, Uncharacterized ACR, FT COG1565" FT CDS complement(128900..129994) FT /transl_table=11 FT /gene="cca" FT /locus_tag="BP3059" FT /product="tRNA nucleotidyltransferase" FT /EC_number="2.7.7.25" FT /note="Similar to Escherichia coli tRNA FT nucleotidyltransferase Cca or B3056 SW:CCA_ECOLI (P06961) FT (412 aa) fasta scores: E(): 1.2e-43, 45.85% id in 338 aa" FT /db_xref="GOA:Q7U358" FT /db_xref="InterPro:IPR002646" FT /db_xref="UniProtKB/Swiss-Prot:Q7U358" FT /protein_id="CAE43328.1" FT /translation="MSRTDDPGVAGLRVYIVGGAVRDDLLGLPAGDRDWVVVGATPEDM FT ARRGFIPVGGDFPVFLHPRTKEEYALARTERKSGRGYKGFTFYTGADVTLEQDLQRRDL FT TVNAIARTPQGELVDPLDGVADVRARVLRHVGEAFAEDPVRILRLGRFAARFGDFSIAP FT ETMQLCRRMVEAGEADALVPERVWKEVSRGLMAQAPSRMLDVLARAGALARVMPELHDD FT TAVRAEIDRAAAAGLPLAGRYALLCRHTPERDALGRRLRAPVECMDQARLLPLAVDALA FT ASATPAAQLDLIERCDALRKPERFDALLQAAAIVAPVDLSAWRARVQAVRAIDAGAIAR FT QCAGDPARIKPALRQARLQALGGA" FT misc_feature complement(129320..129790) FT /note="HMMPfam hit to PF01743, Poly A polymerase family" FT CDS complement(129991..132054) FT /transl_table=11 FT /locus_tag="BP3060" FT /product="putative transglycosylase" FT /note="Similar to Escherichia coli soluble lytic murein FT transglycosylase precursor Slt SW:SLT_ECOLI (645 aa) fasta FT scores: E(): 1.4e-22, 23.39% id in 607 aa, and to Neisseria FT meningitidis putative transglycosylase NMA0503 TR:Q9JW81 FT (EMBL:AL162753) (616 aa) fasta scores: E(): 9e-47, 36.42% FT id in 582 aa. Possible alternative translational start FT sites" FT /db_xref="GOA:Q7VUM5" FT /db_xref="InterPro:IPR008939" FT /db_xref="UniProtKB/TrEMBL:Q7VUM5" FT /protein_id="CAE43329.1" FT /translation="MRGWLPVLALFTAACAPVDAQQRAAASTAPAAVSMQAAPDAEQAR FT RPIAVPPAVLAGLPPAPQTPAQQAVVAAREASQRKQWSVLGALAPQARTDPLGMYPEYW FT LLRYQLWSPPGGRRPDAELQRFLAAHAGSYLEDRLRGDWIQAAARAGDFETVRRLGPVK FT QGNAQIACAGLDARHMTGQRASAAEAVAAFAPGTACWALYDQLVADGVLGWDEIQPQLR FT DAIEAGKLSDARKLAQYIFEPKDQKSYDQMMKNPMKWLVRQDKSPVGRNEKELVTLALA FT RLNKPDVSVADSYLRREWSRHLPRQNLAWVRSQYALVAVLNQDPRAYEWYREAGAVRMT FT EYSHAWKVRSALRQPRIDWKWVIEAIEGMPPSQQAEPVWVYWKARGQAALGRAQQASQA FT YASIADQFNFYGQLAAEELGRRITVPPAPAPVTDAEIAEARAHPGLRRAIYLFRLGWRA FT EAVPEWNFSLRGMSDRQLFAAAELARAEGIYDRVVNTSERTAEQFDFSQRFIAPFEGRV FT SAKARAIDLDPAWVYGLIRQESRFIMDARSHAGASGLMQLMPATAKWVAGKIGMSDFRP FT GSVNDFDVNTELGTQYLNIVLQGLDGSQVLASAGYNAGPGRPRNWRASFGHPVEGAIFA FT ETIPFNETRLYVKNVMSNAVYYAAMFSGQPQSLKERLGSIVPPQAALATNQR" FT misc_feature complement(130153..130512) FT /note="HMMPfam hit to PF01464, Transglycosylase SLT domain" FT CDS 132130..132810 FT /transl_table=11 FT /locus_tag="BP3061" FT /product="5-formyltetrahydrofolate cyclo-ligase family FT protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein SMC02594 TR:CAC41462 (EMBL:AL591782) (222 aa) fasta FT scores: E(): 1.2e-14, 34.42% id in 183 aa, and to FT Escherichia coli hypothetical protein YgfA SW:YGFA_ECOLI () FT (182 aa) fasta scores: E(): 1.5e-07, 29.84% id in 191 aa" FT /db_xref="GOA:Q7VUM4" FT /db_xref="InterPro:IPR002698" FT /db_xref="UniProtKB/TrEMBL:Q7VUM4" FT /protein_id="CAE43330.1" FT /translation="MHTQNTAKNTAAALRARLRQSRAELTSSQRSRGALLMRGRLFTWL FT NLACEQAAAQGRPLSRVAAFWPMEDEPDLLPLLEQWVESGIAVCLPAVQERDAPLVFRD FT WTPDSAMRTGAYGVQEPAAGPAVVPDVVLVPTLGYTLDAARLGYGGGYYDRTLAAWQAA FT GASPTTIGIAWSEGLLPDDYQAAAHDIALDAILTPDGWVPGAPLVASGAAAGHRSAGSR FT FLLR" FT misc_feature 132190..132723 FT /note="HMMPfam hit to PF01812, 5-formyltetrahydrofolate FT cyclo-ligase family" FT CDS 133088..134461 FT /transl_table=11 FT /locus_tag="BP3062" FT /product="putative integral membrane transport protein" FT /note="Similar to Streptomyces coelicolor putative integral FT membrane transport protein 2SCG2.23 TR:Q9EX30 FT (EMBL:AL445963) (478 aa) fasta scores: E(): 3.6e-57, 42.82% FT id in 418 aa, and to Escherichia coli shikimate transporter FT ShiA SW:SHIA_ECOLI (438 aa) fasta scores: E(): 2.2e-52, FT 36.96% id in 422 aa" FT /db_xref="GOA:Q7VUM3" FT /db_xref="InterPro:IPR005828" FT /db_xref="UniProtKB/TrEMBL:Q7VUM3" FT /protein_id="CAE43331.1" FT /translation="MPAIRQSYERNMQGNHQTATHQPVRASIAAFVGTMIEWYDFYIYA FT TAAALVFGKLFFPSVDGFYGTLAAFGTFAVGFLARPLGGAVFGHIGDRIGRKKSLVITL FT LLMGTVTVLIGLLPTYASIGIWAPILLVALRFIQGIAVGGEWGGAVLMAGEHSPDRSKR FT TFFASFAQLGSPAGLILSMLMFKLVTSLDDAAFMDWGWRVPFLFSAALLVVGFAIRLSV FT NESPDFLAEQAEKARLKDAAAKQAADKAPIVEVLRGASGLLALAVGANVLGIAGFYFTN FT TFMLAYTTQYVGLSRGVILDCLLVVSVMQFIITPLSAYIATRIGSRRFLLITSFLSIFT FT PYVMFNMVDQGTLTSLTLGVGLAVVCLGAYYAVIAGYVSDSFPTRIRYTGISMAYQLSG FT AIFGGLTPILGTILAEKFQGHWWPLALLFSGISLLSMISVIFLANHRTDAVTAPLRSA" FT misc_feature 133160..134440 FT /note="HMMPfam hit to PF00083, Sugar (and other) FT transporter" FT misc_feature join(133169..133237,133280..133348,133382..133450, FT 133478..133546,133583..133642,133685..133753, FT 133868..133936,133979..134047,134072..134125, FT 134153..134221,134258..134326,134354..134422) FT /note="12 probable transmembrane helices predicted for FT BP3062 by TMHMM2.0 at aa 28-50, 65-87, 99-121, 131-153, FT 166-185, 200-222, 261-283, 298-320, 329-346, 356-378, FT 391-413 and 423-445" FT CDS 134463..135482 FT /transl_table=11 FT /locus_tag="BP3063" FT /product="putative aminohydrolase" FT /note="Similar to Rhizobium loti acetylpolyamine FT aminohydrolase MLL0103 TR:Q98NK3 (EMBL:AP002994) (342 aa) FT fasta scores: E(): 3.3e-59, 44.67% id in 338 aa, and to FT Mycoplana ramosa acetylpolyamine aminohydrolase AphA FT SW:APHA_MYCRA (EMBL:D10463) (341 aa) fasta scores: E(): FT 2.5e-43, 36.65% id in 341 aa" FT /db_xref="GOA:Q7VUM2" FT /db_xref="InterPro:IPR000286" FT /db_xref="UniProtKB/TrEMBL:Q7VUM2" FT /protein_id="CAE43332.1" FT /translation="MKAFYHPDQKLHHPQTYFSRGKMRTPQEVPARLDALAEAARKLKF FT DVREPVDAGAGAIGAVHSLDYLRFLREAHARWKQLPDDWGDEVVSNVFVREPNALRGVL FT AQAARYLADGSCPVGPHTWQSAYWAAQCAISGAQTLLDGERHAYALCRPPGHHARRDAA FT GGFCYLNNAAIAAQMLTQRYKRVAILDTDMHHGQGIQEIFYERSDVLYVSIHGDPENFY FT PVVAGFENERGAGEGYGYNVNLPMPHGSPEPVFFDRLQQAQRAIELFQPDALVLSLGFD FT VFEKDPQAMVAVSANGFERLGQAIGAFKLPTLIVQEGGYYIEGLEDNAERFFAGLAKA" FT misc_feature 134565..135476 FT /note="HMMPfam hit to PF00850, Histone deacetylase family" FT CDS 135546..136517 FT /transl_table=11 FT /locus_tag="BP3064" FT /product="putative transcriptional regulator" FT /note="Similar to Rhizobium meliloti putative FT transcriptional regulator, LysR family protein, SMB21180 FT TR:CAC49246 (EMBL:AL603645) (317 aa) fasta scores: E(): FT 1.2e-32, 36.89% id in 290 aa, and to Chromatium vinosum FT rubisco operon transcriptional regulator RbcR SW:RBCR_CHRVI FT (EMBL:M64032) (302 aa) fasta scores: E(): 2.1e-12, 26.4% id FT in 284 aa" FT /db_xref="GOA:Q7VUM1" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VUM1" FT /protein_id="CAE43333.1" FT /translation="MSASPAPKKSAAALAPERLDWNLLRTFMFVVQERGVGRAATALHL FT SQPAVSQALKRLEQAVGGVLLYRRSGEFRLTNLGEEIYRLAREMYGMVARVEEAAIQDE FT DDIAGTLRLLVMSKIQSTAYDDFLAHFHRRYPKVEFSVDVMQSAAILDALAKRVPALGL FT CLCRKAIDTLERRLFLRHRYVVVCGRHHPFFSRRNVRVEDLMDQNFVCFASDQLGDTLS FT PLTIFRDQQGFTGRIVGTSPYLEEIRRMVVAGVGLSFLPEHLIRQDVLAGELRRLPPEH FT NVAEIDVFLAWHRQRKLSAAEQAFLAAFERFLHRTPLEMRAR" FT misc_feature 135606..136034 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 135648..135740 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS complement(136582..137532) FT /transl_table=11 FT /locus_tag="BP3065" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q84CT8" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q84CT8" FT /protein_id="CAE43334.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT repeat_region 136582..136613 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(136582..137634) FT misc_feature complement(136618..137151) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(137603..137634) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(137631..138473) FT /transl_table=11 FT /locus_tag="BP3066" FT /product="putative methylenetetrahydrofolate reductase" FT /note="Similar to Pseudomonas aeruginosa FT 5,10-methylenetetrahydrofolate reductase MetF or PA0430 FT TR:Q9I687 (EMBL:AE004480) (290 aa) fasta scores: E(): FT 3.4e-64, 60.93% id in 279 aa, and to Escherichia coli FT 5,10-methylenetetrahydrofolate reductase MetF SW:METF_ECOLI FT (EMBL:V01502) (296 aa) fasta scores: E(): 1.2e-36, 40.97% FT id in 266 aa" FT /db_xref="GOA:Q7VUM0" FT /db_xref="HSSP:1B5T" FT /db_xref="InterPro:IPR004620" FT /db_xref="UniProtKB/TrEMBL:Q7VUM0" FT /protein_id="CAE43335.1" FT /translation="MTQSTAPAFSLEFFPPRDIAAQERLVRAAKQMLAIQPRYVSVTFG FT AGGSTRAGTADTVRTLRNLGCDAAPHLSCIGATRDQLRDILAAYREQGVRRLVALRGDL FT PSGMGGDAGELRYASDLVAFIRQETGDWFHIEVAAYPEMHPQAESPSADLAHFVNKVQA FT GADAAITQYFFNPDAYFDFVERAQAKGVAIPIVPGIMPITNHTQLVRFSEMCGAEIPRW FT IRLRLAEYGDDKASIRAFGLDVVSELCQTLLENGAPGVHFYTLNHAEATLGIWKALNA" FT misc_feature complement(137637..138473) FT /note="HMMPfam hit to PF02219, Methylenetetrahydrofolate FT reductase" FT CDS complement(138473..138808) FT /transl_table=11 FT /locus_tag="BP3067" FT /product="putative membrane protein" FT /note="Similar to Synechocystis sp hypothetical protein FT SLR0284 TR:P74406 (EMBL:D90914) (116 aa) fasta scores: E(): FT 3.2e-13, 44.64% id in 112 aa, and to Streptomyces FT coelicolor hypothetical protein SCQ11.05c SW:YPT3_STRCO FT (EMBL:U37580) (125 aa) fasta scores: E(): 6.8e-09, 42.1% id FT in 114 aa" FT /db_xref="InterPro:IPR007165" FT /db_xref="UniProtKB/TrEMBL:Q7VUL9" FT /protein_id="CAE43336.1" FT /translation="MALILVWILNAVALLAVAYLLHGITVASFGSALVAALVLGLLNML FT VKPVLVLLTLPITIVTLGLFLIILNALLFWFAGSVLRGFQVNGFWWAVAGAILYSIIAG FT LLTKLIP" FT misc_feature complement(join(138479..138544,138566..138631, FT 138644..138709,138731..138796)) FT /note="4 probable transmembrane helices predicted for FT BP3067 by TMHMM2.0 at aa 4-26, 33-55, 59-81 and 88-110" FT misc_feature complement(138704..138808) FT /note="Signal peptide predicted for BP3067 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.932) with cleavage site FT probability 0.398 between residues 35 and 36" FT CDS complement(138879..140297) FT /transl_table=11 FT /gene="acyH" FT /locus_tag="BP3068" FT /product="adenosylhomocysteinase" FT /EC_number="3.3.1.1" FT /note="Similar to Rhodobacter capsulatus FT adenosylhomocysteinase AhcY SW:SAHH_RHOCA (EMBL:M80630) FT (463 aa) fasta scores: E(): 2.1e-123, 70.1% id in 465 aa, FT and to Nicotiana tabacum (Common tobacco) FT adenosylhomocysteinase SahH SW:SAHH_TOBAC (EMBL:M81885) FT (485 aa) fasta scores: E(): 2.2e-110, 61.64% id in 485 aa" FT /db_xref="GOA:Q7VUL8" FT /db_xref="InterPro:IPR020082" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUL8" FT /protein_id="CAE43337.1" FT /translation="MNAVTDKSVADYIVADMALAGWGRRELAIAETEMPGLMAIRDEYA FT ASQPLKGARIAGSLHMTIQTGVLIETLVALGAEVRWASCNIFSTQDHAAAAIAATGTPV FT FAIKGETLEEYWQYTHKIFEWPEGRHANMILDDGGDATLLLHLGARAEQDISVLAKPGS FT EEERVLFAAIKETLGRDPKWYSTRLAQIKGVTEETTTGVHRLYQMSQKGELAFAAINVN FT DSVTKSKFDNLYGCRESLVDGIKRATDVMVAGKIAVVAGYGDVGKGCAQALVALRAQVW FT VTEIDPICALQAAMEGFKVVTMEEAAAHADIFVTATGNYHVITRQHMEAMKDQAIVCNI FT GHFDNEIDVAGLENCQWEEIKPQVDHVIFPDGKRIILLAKGRLVNLGCATGHPSFVMSS FT SFANQTIAQIELFTRNEAYTTGQVYVLPKHLDEKVARLHLKKLGVKLSTLSKQQADYIG FT VPVEGPFKPDHYRY" FT misc_feature complement(139056..140261) FT /note="HMMPfam hit to PF00670, S-adenosyl-L-homocysteine FT hydrolase" FT misc_feature complement(139488..139538) FT /note="ScanRegExp hit to PS00739, S-adenosyl-L-homocysteine FT hydrolase signature 2. Confirmed by InterPro eMOTIF pattern FT match." FT misc_feature complement(140007..140051) FT /note="ScanRegExp hit to PS00738, S-adenosyl-L-homocysteine FT hydrolase signature 1. Confirmed by InterPro eMOTIF pattern FT match." FT RBS complement(140305..140308) FT CDS complement(140577..141617) FT /transl_table=11 FT /locus_tag="BP3069" FT /product="putative glycosyl transferase" FT /note="Similar to Caulobacter crescentus glycosyl FT transferase, group 1 family protein CC3345 TR:Q9A361 FT (EMBL:AE005996) (363 aa) fasta scores: E(): 2.1e-58, 47.8% FT id in 341 aa, and to Rhizobium loti probable glycosyl FT transferase MLR2668 TR:Q98HX4 (EMBL:AP003000) (340 aa) FT fasta scores: E(): 6.9e-56, 48.62% id in 327 aa" FT /db_xref="GOA:Q7VUL7" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7VUL7" FT /protein_id="CAE43338.1" FT /translation="MRIVLVTDAWHPQVNGVVRTWTTMQGLLQDWGHELIVVSPQGSRT FT VPAPSEPDLRLCLQPGRQLRRVLGDVVPDALHIATEGPLGLAARRMALRRGWRFTTSFH FT TMFPDYLQARMGIPAGLPWRYLRWFHRPSQRVLVPTPTVRDIVARRGLGNLQVWSRGVD FT ARRFAPGPRDFLPELPRPLFLCVGRVAREKNLDAFLSLALPGSKVIVGGGPDEARLRRK FT FPAAHFAGPQADDRLAAYYNAADVFVFPSLTDTFGLVMLEAMACGTPVAAFRSEAPLAV FT VQQGATGFLDDDLAQACRAALALDRDEVRAHALTRTWDAVARDLLAAFTPLVEAPLALP FT PAAQRI" FT misc_feature complement(140748..141119) FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1" FT CDS complement(141697..141948) FT /transl_table=11 FT /locus_tag="BP3070" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli hypothetical protein FT YdhL SW:YDHL_ECOLI (P76188) (125 aa) fasta scores: E(): FT 0.039, 36.17% id in 94 aa. C-terminal region is similar to FT Pseudomonas aeruginosa hypothetical protein PA1788 FT TR:Q9I2V4 (EMBL:AE004604) (155 aa) fasta scores: E(): FT 6.1e-05, 51.11% id in 45 aa" FT /db_xref="InterPro:IPR010710" FT /db_xref="UniProtKB/TrEMBL:Q7VUL6" FT /protein_id="CAE43339.1" FT /translation="MTDASFPVAPRVESDETPDRPARVFTATDSPCVAVCSTLFDDICR FT GCGRTAMEVANWVFMSEEEKREVWVRIQAQGYPRRNNY" FT CDS complement(142059..143222) FT /transl_table=11 FT /gene="metK" FT /locus_tag="BP3071" FT /product="S-adenosylmethionine synthetase" FT /EC_number="2.5.1.6" FT /note="Similar to Escherichia coli S-adenosylmethionine FT synthetase MetK SW:METK_ECOLI (EMBL:K02129) (384 aa) fasta FT scores: E(): 1.7e-99, 69.81% id in 381 aa, and to Neisseria FT meningitidis S-adenosylmethionine synthetase MetK or FT NMB1799 TR:Q9JY09 (EMBL:AE002529) (389 aa) fasta scores: FT E(): 3.8e-111, 75.13% id in 386 aa" FT /db_xref="GOA:Q7VUL5" FT /db_xref="InterPro:IPR002133" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUL5" FT /protein_id="CAE43340.1" FT /translation="MANNDFLFTSESVSEGHPDKVADQISDAILDAIFTQDPNARVAAE FT TLCNTGLVVLAGEITTTANVDYIQVARDTIRHIGYDNTEYGIDYKGCAVLVAYDKQSPD FT IAQGVDRSSEDYLNQGAGDQGLMFGYACDETPDLMPAPIWYAHRLVQRQSELRKDGRLP FT WLRPDAKSQVTFRYVDGRPAEVDTVVLSTQHSPEISQASIREAVIEDIIKPSFPEGLIT FT PKTKFLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGACPHGGGAFSGKDPSKVDRSAAY FT AARYVAKNVVAAGLARQCQVQVSYAIGVAEPINITVYTEGTGVIPDEQIAKLVREHFDL FT RPKGIVNMLDLLRPIYTKTAAYGHFGRSEPEFSWEATDKAAALKQGA" FT misc_feature complement(142098..143210) FT /note="HMMPfam hit to PF00438, S-adenosylmethionine FT synthetase, N-terminal domain" FT misc_feature complement(142410..142436) FT /note="ScanRegExp hit to PS00377, S-adenosylmethionine FT synthetase signature 2. Confirmed by InterPro eMOTIF FT pattern match." FT misc_feature complement(142833..142865) FT /note="ScanRegExp hit to PS00376, S-adenosylmethionine FT synthetase signature 1. Confirmed by InterPro eMOTIF FT pattern match." FT RBS complement(143228..143233) FT CDS 143506..144360 FT /transl_table=11 FT /locus_tag="BP3072" FT /product="putative acyltransferase" FT /EC_number="2.3.1.-" FT /note="Similar to Xylella fastidiosa lipid A biosynthesis FT lauroyl acyltransferase XF1348 TR:Q9PDN1 (EMBL:AE003967) FT (316 aa) fasta scores: E(): 7.9e-20, 31.08% id in 296 aa, FT and to Escherichia coli lipid A biosynthesis lauroyl FT acyltransferase HtrB SW:HTRB_ECOLI (EMBL:X61000) (306 aa) FT fasta scores: E(): 2.3e-12, 25.96% id in 285 aa" FT /db_xref="GOA:Q7VUL4" FT /db_xref="InterPro:IPR004960" FT /db_xref="UniProtKB/TrEMBL:Q7VUL4" FT /protein_id="CAE43341.1" FT /translation="MLVTLLRMAAALPLPFLHAAGRLLGRLAYAFPGKYRDRLRANAAQ FT AGYPQPAFARRAAGEIGAMILEMPKVWFRNEQSLGKVVSDDYAIVEAARAEGRGILFLT FT PHLGCFEITARYLARQMPMTVMFRPPRKAALAPVLETARNTSAVNAVPATMQGVRTLRR FT GESVGMLPDQAPGVGDGVWAPFFGRMAYTMTLPGKLASQTGVAVILTAGERLPGGRGWR FT IHYARVPEPLPDGPQEQAALINSAMESLIRRFPEQYLWGYNRYKVPRGAPPAPDSARQE FT PER" FT misc_feature 143506..143562 FT /note="Signal peptide predicted for BP3072 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.922) with cleavage site FT probability 0.902 between residues 19 and 20" FT CDS 144357..145247 FT /transl_table=11 FT /locus_tag="BP3073" FT /product="putative acyltransferase" FT /EC_number="2.3.1.-" FT /note="Similar to Neisseria meningitidis HtrB/MsbB family FT protein NMB1418 TR:Q9JYV2 (EMBL:AE002491) (289 aa) fasta FT scores: E(): 1.2e-32, 35.14% id in 276 aa, and to FT Escherichia coli lipid A biosynthesis lauroyl FT acyltransferase HtrB SW:HTRB_ECOLI (EMBL:X61000) (306 aa) FT fasta scores: E(): 4.5e-28, 34.19% id in 272 aa" FT /db_xref="GOA:Q7VUL3" FT /db_xref="InterPro:IPR004960" FT /db_xref="UniProtKB/TrEMBL:Q7VUL3" FT /protein_id="CAE43342.1" FT /translation="MSQFKTRALTAMLRGFARMRPATRQRAGALVGWLSYRLARSRVRI FT VRRNLELCFPGQPEAVRERWTREHFRALGQSIVDRGVLWYGSPEAVREMVTQTGAERIN FT ALIAAGRPVILLAPHFVALDAAATRLTMEVPSGATMYTPQSDPAVDAIVRAGRARFNEV FT FLVSRKDGVRDLVRHLREPRPVYYLPDMDFGRAGSIFVPFFGVPAATLLATAQLARKWN FT AAVLPILDFWDPRTGRYHVEVLPELPDFPGDGSLEDATTRLNRELESWVLRCPSQYYWV FT HRRFKTRPLGKPKLY" FT CDS 145290..146201 FT /transl_table=11 FT /gene="dapF" FT /locus_tag="BP3074" FT /product="diaminopimelate epimerase" FT /EC_number="5.1.1.7" FT /note="Similar to Neisseria meningitidis putative FT diaminopimelate epimerase DapF or NMA0972 TR:Q9JV69 FT (EMBL:AL162754) (283 aa) fasta scores: E(): 7.6e-46, 50.69% FT id in 286 aa, and to Escherichia coli diaminopimelate FT epimerase DapF SW:DAPF_ECOLI (EMBL:X12968;) (274 aa) fasta FT scores: E(): 4.6e-23, 49.29% id in 284 aa" FT /db_xref="GOA:Q7VUL2" FT /db_xref="HSSP:1GQZ" FT /db_xref="InterPro:IPR018510" FT /db_xref="UniProtKB/TrEMBL:Q7VUL2" FT /protein_id="CAE43343.1" FT /translation="MGDNPCMMWNFTKMHGAGNDFVVLDGVRQDIAMTPERARALADRH FT FGIGADQILLVEPATRADADFRYRIFNADGSEVEHCGNGARCFVRFVHEQGLSARNPLR FT AEIVTGVIVLDEGEDEQVTVDMGSTRFDPPSLPFDSTGLSAQTQGQDTVWNLEIDAPAG FT LPRSVAISTVAISNPHAVQVVDDVDAAPVGVIGPLVESHPRFARRVNVGFMQVVDRHQI FT RLRVYERGAGETLACGTGACAAVAAGVRRGLLDSPVRVHTRGGMLTVDWNGERLRMTGP FT AISVFSGQVDIDRLVFTSGLHR" FT misc_feature 145314..146165 FT /note="HMMPfam hit to PF01678, Diaminopimelate epimerase" FT misc_feature 145503..145547 FT /note="ScanRegExp hit to PS01326, Diaminopimelate epimerase FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 146228..146920 FT /transl_table=11 FT /locus_tag="BP3075" FT /product="conserved hypothetical protein" FT /note="Similar to Xylella fastidiosa hypothetical protein FT XF1482 TR:Q9PD97 (EMBL:AE003977) (226 aa) fasta scores: FT E(): 6.6e-13, 32.27% id in 220 aa" FT /db_xref="InterPro:IPR007435" FT /db_xref="UniProtKB/TrEMBL:Q7VUL1" FT /protein_id="CAE43344.1" FT /translation="MTAHTPTEPLNAHAVAEFLQHNPDFFIEHADVFATLQIPNPHGSR FT AISLGERQIQTLRERTRELEWRLSELIRNANSNETIGDHLSQWCCRMLAEADAQHVPGE FT IALGLAEQFDLNHVALRLWRLEGLPESGYGEPVSDDVRTFADSLKTPYCGTDTEFEAVS FT WLDAKPKSLALVALRPDADAPTFGLLVLGSDDAERFAPDMGTAFLEAIGKLASAALRRL FT GTPPLAAA" FT CDS 146935..147915 FT /transl_table=11 FT /locus_tag="BP3076" FT /product="putative integrase/recombinase" FT /note="Similar to Salmonella typhimurium FT integrase/recombinase XerC SW:XERC_SALTY (EMBL:U92525) (300 FT aa) fasta scores: E(): 4.8e-22, 45.54% id in 314 aa, and to FT Escherichia coli integrase/recombinase XerC SW:XERC_ECOLI FT (EMBL:M87049) (298 aa) fasta scores: E(): 1.8e-21, 45.27% FT id in 307 aa. Also similar to BP1540, 38.855% identity FT (43.729% ungapped) in 332 aa overlap." FT /db_xref="GOA:Q7VUL0" FT /db_xref="HSSP:1A0P" FT /db_xref="InterPro:IPR011931" FT /db_xref="UniProtKB/TrEMBL:Q7VUL0" FT /protein_id="CAE43345.1" FT /translation="MSAAPAASPLPQPMADWLRHLQAHRRYSAHTLDGYTRDLRQLAQQ FT AAAAGLPLERVANGHIRHFVARLHAQGLGPRSLARALAAWRGFYQWWAPAAGLPGNPAT FT GVRAPKAPRGLPKALSVEQTQVLLDHAPARLATEPAALRDHAMFELLYSSGLRLAELVS FT LDLRYERTPEYESRSWLNRDDAEVIVVGKGGKRRSVPVGQSALAALDKWLQARPQLAAA FT GAGAQDAAALFVGARGRRIAPRVVQLQLARLAQAAGLPAHVHPHVLRHSFASHVLQSAQ FT DLRAVQEMLGHANISTTQVYTRLDFQHLARAYDQAHPRAGRKTSR" FT misc_feature 147271..147867 FT /note="HMMPfam hit to PF00589, Phage integrase family" FT CDS complement(147928..150069) FT /transl_table=11 FT /locus_tag="BP3077" FT /product="putative outer membrane protein" FT /note="Similar to Neisseria meningitidis putative FT outer-membrane receptor protein NMA1161 TR:Q9JUS2 FT (EMBL:AL162755) (764 aa) fasta scores: E(): 2e-34, 35.94% FT id in 740 aa" FT /db_xref="GOA:Q7VUK9" FT /db_xref="InterPro:IPR012910" FT /db_xref="UniProtKB/TrEMBL:Q7VUK9" FT /protein_id="CAE43346.1" FT /translation="MICYIVSFNENGTSFYREGNMRFERHPLSAALALALAWQGAHAQA FT SADGTSEAATLAPITVSASPLAGDLDSMTAPAAVLEGDQLLLRRQGTLGDTLDGLPGVH FT ADTFGGGASRPVIRGQTAPRVKVLSDGSELMDASAISPDHAVTTEPLLADKIEVLRGPA FT TLLYGGGAIGGVVNVLDRKIPTAVPQQGIEAEAELRGATGTKERAGAIGITAGSGNFAV FT RVEGLKRRSSDYRVPDWPDGKLAGSYSESGQGTVGMSWITPRGYVGVAFTHLESKYGLP FT GHNHEYEGCHPHGSHLHCGGHDDHGHGHDEHEEGEAEHDHGHEHGAGDVPYVKLRSNRT FT DLRAEYTDPFAGFEKIRFRGGLTDYRHDEIEGGQLGTRFQNRGYDARLELTHRPLYGWH FT GVVGVQTSYSDFRATGEEAFLPRSKTRAHGLFLLEEYRWADWRFELGARQDWQRVSPQS FT GAPASRTAGTSLSAAAIWDFAPQYSLALSVSRSQRLPSAQELYADGVHLATNTYEIGDP FT GLDRETSRNVDLTLRKHSGDTTFSVSAFHNRVKNYIYANTLDRYEDFRLIEYTQRDAEF FT TGVEGEVRHRFGKVFSAAVFGDYVRGRLTGGGGNLPRIPAARLGVRADAQWQNWAGGVE FT YFHVYRQDDIAAYESSTPGYDMVNATIRYRGKLDRTAYEIYLRGNNLLNKLAFNHASFI FT STVAPLPGRSVLLGVRLTY" FT misc_feature complement(149941..150069) FT /note="Signal peptide predicted for BP3077 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.836) with cleavage site FT probability 0.766 between residues 43 and 44" FT CDS complement(150118..151056) FT /transl_table=11 FT /locus_tag="BP3078" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti hypothetical FT transmembrane protein SMC02986 TR:CAC47457 (EMBL:AL591792) FT (344 aa) fasta scores: E(): 2.4e-23, 44.54% id in 330 aa" FT /db_xref="GOA:Q7VUK8" FT /db_xref="InterPro:IPR011541" FT /db_xref="UniProtKB/TrEMBL:Q7VUK8" FT /protein_id="CAE43347.1" FT /translation="MLVLGCLAALPAAAQGAHPFGVPEATGAPGWLAGWFGQVAMWQAH FT FYRQLTGAVRAWQAEGGAAWMLIGLSFAYGVFHALGPGHGKAVIASYVLANRQTARNGA FT WLALLSALAQALVAVALVTVLAVALGATAAAMNRATQWLETAAYAVVSLLGAWLVWQKA FT LRPWWGSKGGHGHGHHAHHHAPGCACGHAHAPSARQAAGPLNARKAWAAILAVGLRPCS FT GALIVLVFALAQGFFLAGVVATLAMGLGTGLTVATLVALAAGARDAATRLGARLSTRRA FT AMLRQAIEALAAVAVLLLGLSLLGGQLAALR" FT misc_feature complement(join(150127..150192,150262..150327, FT 150343..150408,150577..150630,150676..150741, FT 150805..150870)) FT /note="6 probable transmembrane helices predicted for FT BP3078 by TMHMM2.0 at aa 62-84, 105-127, 142-160, 216-238, FT 243-265 and 288-310" FT misc_feature complement(151015..151056) FT /note="Signal peptide predicted for BP3078 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.792) with cleavage site FT probability 0.255 between residues 14 and 15" FT CDS complement(151077..151658) FT /transl_table=11 FT /locus_tag="BP3079" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein SMC02985 TR:CAC47456 (EMBL:AL591792) (214 aa) fasta FT scores: E(): 2.1e-09, 27.91% id in 197 aa" FT /db_xref="InterPro:IPR010412" FT /db_xref="UniProtKB/TrEMBL:Q7VUK7" FT /protein_id="CAE43348.1" FT /translation="MWIDARAVVEFDAAGRIAAVRQVWRFDDMFGAYATQGLSRKPGGG FT LPPDVLRTMAEDWMKALGEPVSHYFTRVTQGARTLPFGPPRDAAVSFEDGRLTLAFTLP FT LAEPAPAGGATAVDIYDPTYFVAYAFDEVGATALRGAPAGCSQAYRPPRPLDWATMQQL FT AAIPADPEALPEELFAITKGLTHRIEVTCP" FT CDS complement(151706..152641) FT /transl_table=11 FT /locus_tag="BP3080" FT /product="putative periplasmic solute binding protein" FT /note="Similar to Rhizobium loti ABC transporter, FT periplasmic binding protein MLL8313 TR:Q983I7 FT (EMBL:AP003013) (313 aa) fasta scores: E(): 8.5e-44, 44.72% FT id in 313 aa, and to Neisseria meningitidis adhesin, FT putative NMB0586 TR:Q9K0K8 (EMBL:AE002414) (304 aa) fasta FT scores: E(): 2.5e-41, 42.12% id in 311 aa" FT /db_xref="GOA:Q7VUK6" FT /db_xref="HSSP:1K0F" FT /db_xref="InterPro:IPR006127" FT /db_xref="UniProtKB/TrEMBL:Q7VUK6" FT /protein_id="CAE43349.1" FT /translation="MKSRILALAAAVLLAPLVAAAQPLQVVASFSILADIAAQVGGPDV FT AVQSLVGPDGDAHEYEPTPADARKLAAAQVLVVNGLDFEAWLPRLQKAAGFAGRTVVAS FT EGIEPRRLDDAHEEHGDHDHGHHGEHGHHHHGDLDPHAWQDLANGATYARNIARAFAEA FT DPAHAQAYRQRADAYVARIEALDQRVRQLFGAIEPARRKVVSSHDAFGYFGQAYGVRFV FT ALAGVSTDAEPSAADMARIIEQVRRERVPAVFVENIANPRLAQQLVRETQARLGGTLYS FT DALAQPGKPAGTYLGMFEWNAQQLAAALRP" FT misc_feature complement(151712..152629) FT /note="HMMPfam hit to PF01297, Periplasmic solute binding FT protein family" FT misc_feature complement(152579..152641) FT /note="Signal peptide predicted for BP3080 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.799 between residues 21 and 22" FT CDS complement(152638..153534) FT /transl_table=11 FT /locus_tag="BP3081" FT /product="putative ABC transporter permease protein" FT /note="Similar to Rhizobium loti ABC transporter, permease FT protein MLL8314 TR:Q983I6 (EMBL:AP003013) (291 aa) fasta FT scores: E(): 6.8e-52, 59.85% id in 269 aa, and to Neisseria FT meningitidis membrane protein NMB0587 TR:Q9K0K7 FT (EMBL:AE002415) (291 aa) fasta scores: E(): 5.7e-51, 55.05% FT id in 287 aa" FT /db_xref="GOA:Q7VUK5" FT /db_xref="InterPro:IPR001626" FT /db_xref="UniProtKB/TrEMBL:Q7VUK5" FT /protein_id="CAE43350.1" FT /translation="MTLAEWLAGPFADYGFMRRALAGAVALSAGAAPLGVFLVLRRMSL FT MGDAMAHAILPGVAAGYLLSGLSLGAMMAGGLLTGLAVALLAGLVARLTPLREDASFAS FT FYLISLGLGVLLVSLRGSNMDLLHVLFGTVLGLDDAALLLVTAVANATLCILALAYRLL FT VAECLDPGFLRAAGGRGAWVHMLFMGLVVLNLVAGFQVLGTLMVVGLMMLPAAAARFWA FT GSAPGQIALAAVSACAASAVGLLVSFHANVPASPAIILAAGAFYLFSVACGPHGGLLVA FT ARRARRARPWQPEGDLP" FT misc_feature complement(join(152698..152763,152779..152844, FT 152866..152931,152944..153009,153046..153111, FT 153172..153228,153265..153330,153415..153471)) FT /note="8 probable transmembrane helices predicted for FT BP3081 by TMHMM2.0 at aa 21-40, 68-90, 102-121, 141-163, FT 175-197, 201-223, 230-252 and 257-279" FT misc_feature complement(152716..153498) FT /note="HMMPfam hit to PF00950, ABC 3 transport family" FT CDS complement(153531..154253) FT /transl_table=11 FT /locus_tag="BP3082" FT /product="putative transport protein ATP-binding" FT /note="Similar to Rhizobium loti ABC transporter, FT ATP-binding protein MLL8315 TR:Q983I5 (EMBL:AP003013) (272 FT aa) fasta scores: E(): 3.5e-36, 51.73% id in 230 aa, and to FT Neisseria meningitidis ABC transporter, ATP-binding protein FT NMB0588 TR:Q9K0K6 (EMBL:AE002415) (251 aa) fasta scores: FT E(): 2.5e-29, 47.11% id in 225 aa" FT /db_xref="GOA:Q7VUK4" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VUK4" FT /protein_id="CAE43351.1" FT /translation="MAMTAPCIALRGAAFGWHGRPAVHGLTGEFSRGSMTAIVGPNGAG FT KSTLLKGLAGVLRPLAGALECEADLRRRLAWLPQASELERGFPITVADMVALGAWGRVG FT AWRRFDAAETARVHAALRRVGLQELAGRALATLSGGQMQRALFARLLLQDAPLLLLDEP FT FSAIDAATTDVLLALLREQHAEGRTVIAVLHDLDLVRRHFPRTLLLAGRQVAWGETGQA FT LGDANLARARGLAMREAA" FT misc_feature complement(153618..154157) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(153801..153845) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature." FT misc_feature complement(154113..154136) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 154573..155085 FT /transl_table=11 FT /locus_tag="BP3083" FT /product="putative regulatory protein" FT /note="Similar to Pseudomonas aeruginosa transcriptional FT regulator NP20 or PA5499 TR:Q9HT74 (EMBL:AE004962) (167 aa) FT fasta scores: E(): 6.6e-17, 37.34% id in 158 aa, and to FT Escherichia coli zinc uptake regulation protein Zur FT SW:ZUR_ECOLI (EMBL:U00006) (171 aa) fasta scores: E(): FT 8.2e-16, 37.41% id in 155 aa" FT /db_xref="GOA:Q7VUK3" FT /db_xref="InterPro:IPR002481" FT /db_xref="UniProtKB/TrEMBL:Q7VUK3" FT /protein_id="CAE43352.1" FT /translation="MTVMSASRPTRADTVGAQLDLAESLCTQRGRRLTPIRRKVLELLL FT VHGRSLKAYELLEAMRAEHPGAAPPTVYRALDFLMDEGLIHRLDAVNAWSACHDAAGEP FT HDLLVVCTGCGAVAEISDPDMSRQLAERVARTGFALATHETEIRALCPQCQQNRPAQAH FT GHTHSHH" FT misc_feature 154654..155016 FT /note="HMMPfam hit to PF01475, Ferric uptake regulator FT family" FT CDS 155362..156477 FT /transl_table=11 FT /locus_tag="BP3084" FT /product="conserved hypothetical protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein CC0321 TR:Q9ABB0 (EMBL:AE005705) (365 aa) fasta FT scores: E(): 9.5e-60, 47.79% id in 362 aa." FT /db_xref="InterPro:IPR011629" FT /db_xref="UniProtKB/TrEMBL:Q7VUK2" FT /protein_id="CAE43353.1" FT /translation="MNTARSLDKMVPVTILTGFLGAGKTTLLKRILTEYHGRRVAVIEN FT EFGPESIDNDLLVQDRDEEIIELSNGCVCCTVRGDLMRTLSDLRARREAGELSFERVII FT ETTGMANPGPVCQTFFMDDDIAEYYRLDAVVTVVDAKHGMATLDAQEEAQKQVGFADRI FT LVSKKDLVNDVDYAALHQRLVRINPRAPITPVHFGEADLKSIIDISGFNLNSILDIDPA FT FLADEHPDAAHDHHDHDHGHGHDHDHDHDHEGECGAHCNHHHHHHHAHHDDEIGAFVFR FT SNKPFDPARLEEFLGGVVQVYGPDLLRYKGILYMKGINRRMLFQGVHMMMGAEPGKAWT FT AAEKPSTKMVFIGRKLPQEIFTRGLEQCLVG" FT misc_feature 155413..155436 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 155485..156420 FT /note="HMMPfam hit to PF02492, Cobalamin synthesis FT protein/P47K" FT misc_feature 156463..156474 FT /note="ScanRegExp hit to PS00294, Prenyl group binding site FT (CAAX box)." FT CDS 156620..157084 FT /transl_table=11 FT /gene="dksA" FT /locus_tag="BP3085" FT /product="putative dnaK suppressor protein" FT /note="Similar to Neisseria meningitidis putative dnaK FT suppressor protein DksA or NMA0213 TR:Q9JWW3 FT (EMBL:AL162752) (138 aa) fasta scores: E(): 2.9e-26, 61.19% FT id in 134 aa, and to Escherichia coli dnaK suppressor FT protein DksA or B0145 or Z0156 or ECS0149SW:DKSA_ECOLI FT (EMBL:M34945) (151 aa) fasta scores: E(): 2e-14, 37.06% id FT in 143 aa" FT /db_xref="GOA:Q7VUK1" FT /db_xref="InterPro:IPR020458" FT /db_xref="UniProtKB/TrEMBL:Q7VUK1" FT /protein_id="CAE43354.1" FT /translation="MATKAATKKSSKSTSDTAIDLPSEQELLAMPEADYMNDRQLAFFK FT ERLKQLEQDILANAGETTEHLRETQFVPDPADRATIEEEHALELRTRDRERKLLKKVQQ FT AIARIDSGEYGWCEETGEPIGVPRLLARPTATLSLEAQERREMRQKLYGD" FT misc_feature 156854..157066 FT /note="HMMPfam hit to PF01258, Prokaryotic dksA/traR FT C4-type zinc finger" FT CDS 157232..157771 FT /transl_table=11 FT /gene="hslV" FT /gene_synonym="htpO" FT /locus_tag="BP3086" FT /product="ATP-dependent protease heat shock protein" FT /EC_number="3.4.25.-" FT /note="Similar to Escherichia coli ATP-dependent protease FT (heat shock protein) HslV or HtpO or B3932 or Z5479 or FT ECS4859 SW:HSLV_ECOLI (EMBL:AE000467) (175 aa) fasta FT scores: E(): 8.2e-44, 67.25% id in 171 aa" FT /db_xref="GOA:Q7VUK0" FT /db_xref="InterPro:IPR001353" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUK0" FT /protein_id="CAE43355.1" FT /translation="MEQFHATTIVCVRRGNHVALGGDGQVTLGNIVIKGTVRKIRRLYH FT DKVLAGFAGATADAFTLQERFEAKLEKHQGHLMRAAVELTRDWRTDRVLRRLEAMLIVA FT DTEHTLVLTGNGDVLEPEHGLAAIGSGGAYAQSAALALLRNTELPPEAIVKQSLEIAGD FT LCIYTNQNHVIETLGA" FT misc_feature 157253..157453 FT /note="HMMPfam hit to PF00227, Proteasome A-type and FT B-type" FT CDS 157793..159127 FT /transl_table=11 FT /gene="hslU" FT /gene_synonym="htpI" FT /locus_tag="BP3087" FT /product="ATP-dependent Hsl protease ATP-binding subunit" FT /note="Similar to Escherichia coli ATP-dependent Hsl FT protease ATP-binding subunit (heat shock protein) HslU or FT HtpI or B3931 or Z5478 or ECS4858 SW:HSLU_ECOLI FT (EMBL:L19201) (443 aa) fasta scores: E(): 1.7e-88, 63.43% FT id in 443 aa" FT /db_xref="GOA:Q7VUJ9" FT /db_xref="HSSP:1G41" FT /db_xref="InterPro:IPR004491" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUJ9" FT /protein_id="CAE43356.1" FT /translation="MSANHMTPGEIVSELDKFIIGQNRAKRAVAVALRNRWRRQQVAEP FT LRHEIHPKNILMIGPTGVGKTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRD FT LTEYSIKQTRELEMRRVRSHAEDAAEDRILDALVPPPRGASGEPERGEDNSARQTFRKR FT LREGKIDDLEIEIEIAQPMPQMDVMTPPGMEEMAEQLRGMFAGLARDKKKSKKIKVREA FT FKLIVEEEAAKRVNEDDLRAAAITNVEQNGIVFLDEIDKIAARQETGGADVSRQGVQRD FT LLPLVEGTTVNTRYGMVRTDHILFIASGAFHLARPSDLIPELQGRFPIRVELDSLSAED FT FVSILSETDASLIKQYTALLGTEDVKLEFTDDGIRRLAELAFSVNERTENIGARRLYTV FT MEKLLEELSFDASANSGEVITIDAAYVDLQLAETAGSQDLARYVL" FT misc_feature 157952..158953 FT /note="HMMPfam hit to PF00004, ATPase family associated FT with various cellular activities (AAA)" FT misc_feature 157967..157990 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(159141..159446) FT /transl_table=11 FT /locus_tag="BP3088" FT /product="putative exported protein" FT /note="Similar to Agrobacterium tumefaciens hypothetical FT protein Agr_l_1727p TR:AAK89437 (EMBL:AE008284) (94 aa) FT fasta scores: E(): 9.9e-08, 43.67% id in 87 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VUJ8" FT /protein_id="CAE43357.1" FT /translation="MAFSRKYSSRMAVATAMAVVSLATPLAFAQQADATGEVRRVDAAA FT GKVSIKHDAISALDLPAMTLVYQIDPALLAGIKPGDKVRFTATRKDGRYVVTAISK" FT misc_feature complement(159360..159446) FT /note="Signal peptide predicted for BP3088 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.983 between residues 29 and 30" FT CDS 159871..160431 FT /transl_table=11 FT /locus_tag="BP3090" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PA4399 TR:Q9HW07 (EMBL:AE004855) (192 aa) fasta FT scores: E(): 1.4e-26, 48.95% id in 192 aa. Similar to FT BP0266, BP1766, BP2719, BP3683, and BP3731" FT /db_xref="GOA:Q7VUJ7" FT /db_xref="InterPro:IPR002779" FT /db_xref="UniProtKB/TrEMBL:Q7VUJ7" FT /protein_id="CAE43358.1" FT /translation="MANRLSVIATRTGDDGSTGLGDGSRVGKDTARIAALGDVDELNSV FT LGLLRAETLPAEMDADLSTIQHDLFDMGAELCIPGHIALADEQVAHLDARLAHYNAGLA FT PLREFILPGGSRAAALCHLGRTVARRAERSVVALARAEVVNAPVRQYLNRLSDLLFVLA FT RHVNQAQGARDVYWASRHARPAD" FT misc_feature 159892..160374 FT /note="HMMPfam hit to PF01923, Protein of unknown function FT DUF80" FT repeat_region 160428..160459 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 160428..161480 FT CDS 160530..161480 FT /transl_table=11 FT /locus_tag="BP3091" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTC0" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTC0" FT /protein_id="CAE43359.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN" FT misc_feature 160911..161444 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(161449..161480) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 161697..163271 FT /transl_table=11 FT /locus_tag="BP3092" FT /product="putative phospholipase D protein" FT /note="Similar to Neisseria meningitidis phopholipase FT D-family protein NMA1646 TR:Q9JTT1 (EMBL:AL162756) (525 aa) FT fasta scores: E(): 5.7e-86, 49.51% id in 519 aa" FT /db_xref="GOA:Q7VUJ6" FT /db_xref="InterPro:IPR001736" FT /db_xref="UniProtKB/TrEMBL:Q7VUJ6" FT /protein_id="CAE43360.1" FT /translation="MPRLLSRIRAARARAAALLALAGCAILLGACTLPPPVDRTASHAL FT DATQARATPLGQGVGELADTHPGLSGFHVLGDAQDAFAARMLLARAATRTLDVQYYIWR FT NDMTGTLLLQALHAAAERGVRVRLLLDDNGISGLDDALAALDAHPNAEVRLFNPFPTRS FT FKALGYLTDFSRLNRRMHNKSFTVDNQATIIGGRNIGDEYFGATDGVLFADLDVLAVGP FT VVGDVSAEFDAYWASESAWPAGPLLPAPGAQTLRALAERAARIEQDPAAGDYMSALREL FT PFIRELMAGRLPLQWAPARMVSDDPAKGLGKAPPAGLLTQQLRNILGEPRRTLDLVSPY FT FVPAEAGTQAFAALARGGAQVRVLTNALEATDVAVVHSGYAKRRKALLQAGVRLYEMRR FT SYAGPKPQGRGRFGSSGSSLHAKTFGVDGERVFIGSFNFDPRSANLNTELGFVIESPDM FT ARHIAATFDQDIPAATYEVRLDDDGSLYWLEQRDGATVRHDSEPGVSLWRRFSVWLFSL FT LPLEPLL" FT misc_feature 161739..161807 FT /note="1 probable transmembrane helix predicted for BP3092 FT by TMHMM2.0 at aa 71-93" FT misc_feature 162222..162305 FT /note="HMMPfam hit to PF00614, Phospholipase D. Active site FT motif" FT misc_feature 162939..163022 FT /note="HMMPfam hit to PF00614, Phospholipase D. Active site FT motif" FT CDS complement(163278..164387) FT /transl_table=11 FT /gene="modD" FT /locus_tag="BP3093" FT /product="molybdenum transport ATP-binding protein" FT /note="Similar to Azotobacter vinelandii molybdenum FT transport ATP-binding protein ModD SW:MODD_AZOVI FT (EMBL:X69077) (380 aa) fasta scores: E(): 8.8e-76, 65.92% FT id in 358 aa" FT /db_xref="GOA:Q7VUJ5" FT /db_xref="HSSP:1US8" FT /db_xref="InterPro:IPR005116" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUJ5" FT /protein_id="CAE43361.1" FT /translation="MPSDFPPGQAGIHARFRVDYPEFSLDVDLRLPGRGVTALFGQSGS FT GKTTCLRCMAGLAPVSDGYLDINGEVWLDSAARRAVPTHKRALGYVFQEASLFEHLDVL FT ANLRYGMKRVPPALRRVDLEQATGLLGIGHLLARMPAGLSGGERQRVGIARALLTSPRL FT LLMDEPLAALDVQRKREILPYLERLHDELDIPVIYVSHSPDEVARLADHLVLLEQGRAV FT ASGPLDALLTRLDLPMAMTDDASVVVTGEAAGFDPGYALLTLQLPGGRARLRFVHQAAP FT AGQRLRVVVHARDVSLALQQPREGSILNVLAVRVLEMAPAANPAHVMVRLDADGTPLLA FT RITRYSRDRLALAPEMQAWAQIKAVSLLA" FT misc_feature complement(163731..164288) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(163917..163961) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(164244..164267) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(164399..165079) FT /transl_table=11 FT /gene="modC" FT /locus_tag="BP3094" FT /product="molybdenum transport system permease protein" FT /note="Similar to Azotobacter vinelandii molybdenum FT transport system permease protein ModC SW:MODC_AZOVI FT (EMBL:X69077) (226 aa) fasta scores: E(): 2.1e-66, 80.45% FT id in 220 aa" FT /db_xref="GOA:Q7VUJ4" FT /db_xref="InterPro:IPR011867" FT /db_xref="UniProtKB/TrEMBL:Q7VUJ4" FT /protein_id="CAE43362.1" FT /translation="MSLTSADWAAIWLTIELASLTTLLLLVIGTPIAWWLARTRSRLKG FT PVGAIVALPLVLPPTVIGFYLLVAMGPNGYVGQLTQSLGLGTLPFTFAGLVVGSVFYSM FT PFVVQPLHNAFEAIGRRPLEAAATLRAGPWDRFVSVALPLARPGFVTAGILGFAHTVGE FT FGVVLMIGGNIPGKTRVVSVQIFDHVEALEYAQAHWLAGGMVVFSFIILLLLYSRRQRA FT TAAL" FT misc_feature complement(join(164432..164497,164558..164623, FT 164756..164821,164867..164932,164969..165034)) FT /note="5 probable transmembrane helices predicted for FT BP3094 by TMHMM2.0 at aa 15-37, 49-71, 86-108, 152-174 and FT 194-216" FT misc_feature complement(164510..164740) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature complement(164546..164569) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(165101..165856) FT /transl_table=11 FT /gene="modB" FT /locus_tag="BP3095" FT /product="molybdate-binding periplasmic protein precursor" FT /note="Similar to Azotobacter vinelandii molybdate-binding FT periplasmic protein precursor ModB SW:MODB_AZOVI FT (EMBL:X69077) (252 aa) fasta scores: E(): 7.4e-61, 69.7% id FT in 241 aa. Also similar to BP3105, 45.600% identity FT (45.783% ungapped) in 250 aa overlap." FT /db_xref="GOA:Q7VUJ3" FT /db_xref="InterPro:IPR005950" FT /db_xref="UniProtKB/TrEMBL:Q7VUJ3" FT /protein_id="CAE43363.1" FT /translation="MKIRAIPTLWALAATLLAAPALAGEVQVAVAANFTAPMQAIAKAF FT EEDTGNRAVASFGATGQFYAQIKNGAPFEVFLAADDSTPAKLDAEQETVPGSRFTYATG FT ALALWSARAGYVDDQGAVLKQGDFKHLSIANPKTAPYGLAATQVLAKLGLADKLAPRIV FT EGQSISQAYQFVASSNAELGFVALSQIYKDGKLTGGSAWIVPASMHEPIRQDAVILKKG FT QDNATARAFVEYLKSPRSAAIIKSFGYQL" FT misc_feature complement(165788..165856) FT /note="Signal peptide predicted for BP3095 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.974 between residues 23 and 24" FT CDS complement(165992..166876) FT /transl_table=11 FT /locus_tag="BP3096" FT /product="putative hydrolase" FT /note="Similar to Saccharomyces cerevisiae hypothetical FT protein SW:YN93_YEAST (EMBL:Z71679) (290 aa) fasta scores: FT E(): 1.3e-44, 44.16% id in 274 aa" FT /db_xref="GOA:Q7VUJ2" FT /db_xref="InterPro:IPR000073" FT /db_xref="UniProtKB/TrEMBL:Q7VUJ2" FT /protein_id="CAE43364.1" FT /translation="MMPGNAAPRPVHYRHEQVGDVKIFYREAGDPASPAVLLLHGFAAS FT SYMYRDVIAALADGYRVVAPDLPSFGFTESPARDAYAYTFDNITRTMDRFTEQLKLDRY FT ALMVHDYGAPVGWRLASAHPDRVTALVSQNGNAYEEGLAQGWDAIRRYWASPTAENRAA FT LHGFPTPASIKWQYLEGVPDPSLVAPDGYTLEGLQVSRPGNAEIQLDLLLDYASNVQRY FT PQFQAYFRDRQPPLLAVWGRNDPYFLPAGAEAWKRDIPAAEVRFYDTGHFALETHGAEI FT IPAIRAFLDAKVR" FT misc_feature complement(166010..166699) FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold" FT CDS 166964..167545 FT /transl_table=11 FT /locus_tag="BP3097" FT /product="conserved hypothetical protein" FT /note="Similar to Streptomyces coelicolor hypothetical FT protein SCE59.14c TR:Q9L1U0 (EMBL:AL138851) (196 aa) fasta FT scores: E(): 2.2e-09, 33.33% id in 195 aa" FT /db_xref="InterPro:IPR010852" FT /db_xref="UniProtKB/TrEMBL:Q7VUJ1" FT /protein_id="CAE43365.1" FT /translation="MATPATHPPHFIANNLALDFINSAFGVGPASHDCLGDDESALAWL FT EAAGHVPAGLAGPPAGLAELARALREAAARMVRAAQAGQGGDAALVNQVLEAGRPARKL FT AWDNGQGGYTLAECPRDHSAASLLEPVAAALADLLAGDALRHVRRCEAHDCTLVFLDVT FT KSHRRRWCSMALCGNRMKVAAFRSRRQGAG" FT CDS complement(167638..167760) FT /transl_table=11 FT /locus_tag="BP3098" FT /product="hypothetical protein" FT /note="No significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VUJ0" FT /protein_id="CAE43366.1" FT /translation="MKQFAVTLLALFGVDAQASVAGPQRLLPILSGEPTRTERH" FT CDS complement(167806..168105) FT /transl_table=11 FT /locus_tag="BP3099" FT /product="putative exported protein" FT /note="No significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VUI9" FT /protein_id="CAE43367.1" FT /translation="MRTFTSAALLAAALFGFNAFAGSGELDYPPAGAQGGSLTRSQVQH FT ELAIARAAGQLVFGEAQEPAARPAGDAATRAQVQAELAQARDASAASEYVETGA" FT misc_feature complement(168043..168105) FT /note="Signal peptide predicted for BP3099 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.991 between residues 21 and 22" FT CDS complement(168257..168736) FT /transl_table=11 FT /locus_tag="BP3100" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti hypothetical/unknown FT transmembrane protein SMC00031 TR:CAC45518 (EMBL:AL591785) FT (159 aa) fasta scores: E(): 9.6e-08, 36.42% id in 140 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VUI8" FT /protein_id="CAE43368.1" FT /translation="MDPPAWAALLEACALGAWMRGSSWAYPAANLAHLLGLVLLVGAML FT LLDLRLLGLGRRFALADVSAVLTPLAAGGLLLQLASGALLFSADAVPLSGNALMQYKAA FT GIALGVANALLFRALWGARLAGWDSRPPPWGRLQAALSLLLWLAVATLGRLIAYA" FT misc_feature complement(join(168269..168334,168374..168427, FT 168473..168538,168578..168643)) FT /note="4 probable transmembrane helices predicted for FT BP3100 by TMHMM2.0 at aa 31-53, 66-88, 103-121 and 134-156" FT misc_feature complement(168662..168736) FT /note="Signal peptide predicted for BP3100 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.612) with cleavage site FT probability 0.608 between residues 25 and 26" FT CDS complement(join(168752..169198,169197..169751, FT 169753..170892)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3101" FT /product="putative TonB-dependent receptor (Pseudogene)" FT /note="Pseudogene. This CDS appears to have two frameshift FT mutations (following codons 380 and 565) and a deletion FT (around codon 628). This deletion removed the C-terminal FT region of this CDS and resulted in its fusion with the FT downstream CDS. The sequence has been checked and believed FT to be correct. Similar to Escherichia coli probable FT TonB-dependent receptor YncD precursor YncD or B1451 FT SW:YNCD_ECOLI (P76115) (700 aa) fasta scores: E(): FT 3.5e-133, 54.31% id in 637 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa2289 TR:Q9I1I6 FT (EMBL:AE004654) (710 aa) fasta scores: E(): 6.4e-94, 44.71% FT id in 615 aa" FT /db_xref="PSEUDO:CAE43369.1" FT variation complement(169016..169018) FT /note="large deletion in pertussis relative to FT parapertussis and bronchiseptica" FT variation complement(169199..169206) FT /note="(CG)4 in pertussis; (CG)5 in parapertussis and FT bronchiseptica" FT variation complement(169750..169752) FT /note="CAT in pertussis; C(-)T deleted in parapertussis and FT bronciseptica" FT CDS complement(170889..171317) FT /transl_table=11 FT /locus_tag="BP3102" FT /product="putative regulatory protein" FT /note="Similar to Rhodobacter capsulatus proline FT dehydrogenase transcriptional activator PutR SW:PUTR_RHOCA FT (Q52710) (154 aa) fasta scores: E(): 8.5e-08, 30.13% id in FT 146 aa, and to Rhizobium meliloti putative transcriptional FT regulator, AsnC family protein SMB21493 TR:CAC49722 FT (EMBL:AL603646) (153 aa) fasta scores: E(): 1.5e-22, 52.2% FT id in 136 aa" FT /db_xref="GOA:Q7VUI7" FT /db_xref="InterPro:IPR019888" FT /db_xref="UniProtKB/TrEMBL:Q7VUI7" FT /protein_id="CAE43370.1" FT /translation="MDHALDALDRRLLALLRADARLPTATLARQLHVSRGTVQNRMARL FT ERSGIVAGYTVRLRNEDEHGIRAITLIEVRGAATDAVVAALRRIPEALQVHSTNGRWDL FT VVELRAADLPAFDRVLRDLRSIDGVANSESNLLLTAHR" FT misc_feature complement(170934..171233) FT /note="HMMPfam hit to PF01037, AsnC family" FT RBS complement(171324..171327) FT CDS complement(171408..172358) FT /transl_table=11 FT /locus_tag="BP3103" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE43371.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 171408..171439 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(171408..172460) FT misc_feature complement(171444..171977) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(172429..172460) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(172440..172811) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3104" FT /product="N-terminal region of a putative membrane protein FT (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. The C-terminal region of this CDS is FT BP3450. Similar to the N-terminal regions of Vibrio FT cholerae hypothetical protein VC0136 TR:Q9KVK7 FT (EMBL:AE004104) (205 aa) fasta scores: E(): 8.7e-11, 40.67% FT id in 118 aa, and Escherichia coli homoserine/homoserine FT lactone efflux protein RhtB or B3824 or Z5345 or ECS4754 FT SW:RHTB_ECOLI (EMBL:M87049) (206 aa) fasta scores: E(): FT 1.3e-09, 39.45% id in 109 aa." FT /db_xref="PSEUDO:CAE43372.1" FT misc_feature complement(join(172539..172595,172617..172682, FT 172728..172793)) FT /note="3 probable transmembrane helices predicted for FT BP3104 by TMHMM2.0 at aa 21-43, 58-80 and 87-106" FT CDS complement(172886..173659) FT /transl_table=11 FT /locus_tag="BP3105" FT /product="putative molybdate-binding periplasmic protein" FT /note="Similar to Rhodobacter capsulatus molybdate-binding FT periplasmic protein precursor ModA SW:MODA_RHOCA FT (EMBL:L06254) (252 aa) fasta scores: E(): 9.2e-27, 37.84% FT id in 251 aa, and to Escherichia coli molybdate-binding FT periplasmic protein precursor ModA SW:MODA_ECOLI FT (EMBL:L34009) (257 aa) fasta scores: E(): 1.6e-09, 27.3% id FT in 249 aa. Also similar to BP3095, 45.600% identity FT (45.783% ungapped) in 250 aa overlap." FT /db_xref="GOA:Q7VUI6" FT /db_xref="InterPro:IPR005950" FT /db_xref="UniProtKB/TrEMBL:Q7VUI6" FT /protein_id="CAE43373.1" FT /translation="MEYPRIPGAALLAAALLAGQASAGEVRVAVATKLAEPIRLVAASF FT EKDTGNKVHYTVAPTSAFLRQIAEGADFDVLLPNNKAALSELEALDRVVPGTRHTYAQN FT VLVLWSPFKDYVDDQGQVLRRNQFQRLSVASPNRVYGRPAAQVLDNLGLAKAVEDKLVE FT RHDLAQSRQFVTAGGADLGIVTLSQVYANGKLQRGSAWLIPQTLYDPIEQQAVILKPGR FT DNPVARSFLFYLRGPKAGSILISHGYRYQLFSESL" FT misc_feature complement(173591..173659) FT /note="Signal peptide predicted for BP3105 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 23 and 24" FT CDS complement(173792..174802) FT /transl_table=11 FT /locus_tag="BP3106" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein SMA1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta FT scores: E(): 3.7e-51, 43.93% id in 330 aa" FT /db_xref="GOA:Q7VUI5" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VUI5" FT /protein_id="CAE43374.1" FT /translation="MTVISRYLLGAFGRKARLACASAMLGAALLPAGAASADTYPSKPV FT RLIVPYTPGGATDMVARIVAQHLGARLGQSVIVENKPGAGGNIGSQMVASALPDGYTLL FT FSTTANAINESLYKDLPFDFKQAFEPVTQLVELPNVVITGPDVPVNSIAQVIALAKKDP FT KALTYASAGTGTSTHLATELFKTMAGVNILHVPYKGSAPAMTDLRGGRVQLMFDNIPSA FT LPQVQAGAVRALAVTSSRRSPVLPDVPTVAEAGVPGYEAVAWHGISVPAKTPAPIVERL FT SGEIAQVLKQPEVVKQLTAIGATPVGSTPAQFQAHIDKELAKWQKVVAESGASLN" FT misc_feature complement(174692..174802) FT /note="Signal peptide predicted for BP3106 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.930 between residues 37 and 38" FT CDS complement(174954..176609) FT /transl_table=11 FT /locus_tag="BP3107" FT /product="putative gamma-glutamyltranspeptidase" FT /note="Similar to Streptomyces coelicolor putative FT gamma-glutamyltranspeptidase SC3C8.26 TR:O69935 FT (EMBL:AL023861) (603 aa) fasta scores: E(): 3.6e-36, 31.41% FT id in 573 aa, and to Escherichia coli FT gamma-glutamyltranspeptidase precursor Ggt or B3447 FT SW:GGT_ECOLI () (580 aa) fasta scores: E(): 1.5e-21, 31.52% FT id in 533 aa" FT /db_xref="GOA:Q7VUI4" FT /db_xref="InterPro:IPR016160" FT /db_xref="UniProtKB/TrEMBL:Q7VUI4" FT /protein_id="CAE43375.1" FT /translation="MSVDAFATGQSATSTYTAHRPVIAANRHAVSSGHYLASHAAFQIL FT ESGGNAVDAGVAAGLVLGVVHSDQVNIAGVAPMMIYLAAEDRVITIDGLGSWPAAASCE FT RFEREFGGVVPEGLLRTVIPAAPGAWITALQRYGTRSFAEVAQYAIRFAREGFIMYPFL FT ADRLQEAEAKYRRWPSNAAIYLPGGRPPRVGERFVQSDLAASLQYMADQETATAGSRVR FT KLQAARDAFYQGDIASKIVAFHQENGGLLTAADLAGYAPTIEAPLSTRYGDMDVYACNF FT WCQGPALLQALNILKSFDLKEMGHNSTRYIHHVAEALKLTFADREHYYADPRFIDVPAQ FT TLLSDAYARQRAQLVRADRAWPEMPPCGEIAGYETLRAIHGNISREIDPPLDTSYVCVV FT DRYGNAFSATPSDVSSDTIVIPGTGLCPSSRGSQSRADASHPASLAPGKRPRLTPNPAM FT AIQRGKRILPLGSPGGNSQVQAMLQVLLNITLFGMDPQTAIEAPRFISYSHPDSFAPHA FT YYPGRLSVEGRIPAQTEQTLAALGHDMQRWPDWL" FT misc_feature complement(174957..176486) FT /note="HMMPfam hit to PF01019, FT Gamma-glutamyltranspeptidase" FT misc_feature complement(176454..176477) FT /note="ScanRegExp hit to PS00687, Aldehyde dehydrogenases FT glutamic acid active site." FT CDS complement(176664..177005) FT /transl_table=11 FT /locus_tag="BP3108" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PA1917 TR:Q9I2I7 (EMBL:AE004617) (115 aa) fasta FT scores: E(): 8.7e-17, 50% id in 114 aa, and to Pseudomonas FT aeruginosa hypothetical protein PA3425 TR:Q9HYI0 FT (EMBL:AE004763) (114 aa) fasta scores: E(): 6.4e-18, 55.76% FT id in 104 aa" FT /db_xref="InterPro:IPR014710" FT /db_xref="UniProtKB/TrEMBL:Q7VUI3" FT /protein_id="CAE43376.1" FT /translation="MKKPVVINAAPSGAFTPKTAVPGQPVAADRSTDVGLAPQEGVTAG FT IWECQPGLFRRTIMQREFSHFIAGHCYFTPDGGEAIEIRAGDAVYFPADCHGVWDVRET FT LRKSYLIID" FT CDS complement(177019..178458) FT /transl_table=11 FT /locus_tag="BP3109" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PA1918 TR:Q9I2I6 (EMBL:AE004617) (466 aa) fasta FT scores: E(): 1.4e-104, 59.09% id in 462 aa, and to FT Pseudomonas aeruginosa hypothetical protein PA3424 FT TR:Q9HYI1 (EMBL:AE004763) (468 aa) fasta scores: E(): FT 3.2e-29, 32.19% id in 469 aa" FT /db_xref="GOA:Q7VUI2" FT /db_xref="InterPro:IPR006076" FT /db_xref="UniProtKB/TrEMBL:Q7VUI2" FT /protein_id="CAE43377.1" FT /translation="MRASTNQTLQLDRRAALPALARSYWFKQAVPQESAPQGLRGRHSV FT DIAIVGGGFVGLWTALAAKAMQPTARVIVLERDLCGGGASGRNGGFAMSWWPKISTLLS FT MAGRDEALRLALASERAIGELERFCLARGVDAHFVRGGWFWTATTEAQRGAWASTLQAC FT ERVGHQPFTAVAPDELARRTGSPVHLEGIFDTATATVQPALLARGLRQAALDDGIEVYE FT GSAVRTLHTGAPAVLGLDEAEVRAGTVVLANNVWAAAIPELAPLITPVNSALVVTEPIG FT ERLQELGWRGNEAITDSQLLVGYYRKTRDGRLVFGKGSGALSSGGRIGQVFSRDPGTEA FT LTEADFRRTYPELRDVAIAQAWAGPIDRTYDSLPVFGRLRGADHICYGIGWSGNGVAPS FT WVGGQILASLALGRKNEWSESALVGRECRKFPPEPIRFMGGTLVRNAVLRKERDEALGR FT KPAWLDTRLATLAPAGLEDKS" FT CDS complement(178591..179430) FT /transl_table=11 FT /locus_tag="BP3110" FT /product="probable MerR-family transcriptional regulator" FT /note="Similar to Rhizobium meliloti hypothetical protein FT SMB21187 TR:CAC49253 (EMBL:AL603645) (276 aa) fasta scores: FT E(): 3.8e-34, 41.32% id in 271 aa, and to Pseudomonas FT aeruginosa probable transcriptional regulator PA4987 FT TR:Q9HUH8 (EMBL:AE004911) (199 aa) fasta scores: E(): FT 1.3e-10, 30.8% id in 198 aa" FT /db_xref="GOA:Q7VUI1" FT /db_xref="InterPro:IPR000551" FT /db_xref="UniProtKB/TrEMBL:Q7VUI1" FT /protein_id="CAE43378.1" FT /translation="MHNPSRSNMPEFGITQAAQLTGTNPSTLRLWEQHGLLSPLRSPTG FT QRIYGEHDLGLISTILRLRKVEGLNISAIKRALASTAPAPQDPARPKRSANTQQLGRQF FT RVARQKHDMSLQEAADATGLPVSFISTFERTGQGAAVASLQRLAACYGTTVTELSAPPA FT RSADSSAHVVRGGKARQAPSFGAGIQIFQLAETLQSLDCQRWVLQPGAQSDGAYSHEGE FT EFIHVLHGRFHISVQGLKTWELVAGDSISFDSRLLHSWSAAGDEPTVLLWVNTPRSF" FT misc_feature complement(178957..179121) FT /note="HMMPfam hit to PF01381, Helix-turn-helix" FT misc_feature complement(179284..179388) FT /note="HMMPfam hit to PF00376, Bacterial regulatory FT proteins, merR family" FT repeat_region 179498..179529 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 179498..180550 FT CDS 179600..180550 FT /transl_table=11 FT /locus_tag="BP3111" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE43379.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 179981..180514 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(180519..180550) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 180554..181255 FT /pseudo FT /transl_table=11 FT /locus_tag="BP3112" FT /product="putative integrase (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Francisella novicida FT hypothetical protein TR:Q9Z5W6 (EMBL:AF121418) (292 aa) FT fasta scores: E(): 1.4e-23, 37.06% id in 232 aa" FT /db_xref="PSEUDO:CAE43380.1" FT CDS complement(join(181334..181699,181703..183154, FT 183158..183412)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3113" FT /product="putative DNA helicase (Pseudogene)" FT /note="Similar to Escherichia coli O157:H7 putative DNA FT helicase ECS5264 TR:BAB38687 (EMBL:AP002569) (704 aa) fasta FT scores: E(): 8.3e-44, 33.7% id in 709 aa" FT /db_xref="PSEUDO:CAE43381.1" FT variation complement(181700..181702) FT /note="TAG stop in pertussis. This CDS seems to be missing FT in parapertussis" FT misc_feature complement(182000..182107) FT /note="HMMPfam hit to PF00580, UvrD/REP helicase" FT misc_feature complement(182603..182716) FT /note="HMMPfam hit to PF00580, UvrD/REP helicase" FT misc_feature complement(182633..182656) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT variation complement(183155..183157) FT /note="TAA stop in pertussis. This CDS seems to be missing FT in parapertussis" FT CDS complement(183927..184877) FT /transl_table=11 FT /locus_tag="BP3114" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q84CT8" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q84CT8" FT /protein_id="CAE43382.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT repeat_region 183927..183958 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(183927..184979) FT misc_feature complement(183963..184496) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(184948..184979) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT misc_feature complement(184981..195106) FT /note="Low %GC region. Unique relative to bronchiseptica FT and parapertussis. In bronchiseptica it is replaced with FT another low %GC region" FT CDS complement(185061..186272) FT /transl_table=11 FT /locus_tag="BP3115" FT /product="conserved hypothetical protein" FT /note="Very low similarity to Sulfolobus tokodaii 382aa FT long hypothetical protein ST2010 TR:BAB67105 FT (EMBL:AP000988) (382 aa) fasta scores: E(): 0.0051, 20.61% FT id in 388 aa" FT /db_xref="GOA:Q7VUI0" FT /db_xref="InterPro:IPR014555" FT /db_xref="UniProtKB/TrEMBL:Q7VUI0" FT /protein_id="CAE43383.1" FT /translation="MTQHPFISRVAVRNYKSIGYCDVNLRPLTYLVGHNGAGKSNFMDA FT LHFVCDALSYSLDSALNERGGINEVRRRSGGHPTHFALRVEFVMQSGQAGRYGFVIGAL FT KNGGYEVQREECVVAGIGKGPFFRIEKGKLRDSSETTFPSVTADRLALVAASGLTAFRP FT VFDALTAMGFYNLNPKLMRELQKPQDGRLLRPAGENIASVIGHLEKVAPAQMALIQEYL FT HSVAPMVHGVERKPIGPMETLEFRQDMAGSKHPWRFLAQNMSDGTLRALGVLSALLQGN FT VDYSPTLIGIEEPETALHPAASAALREALVRASETTQVLVTSHSPDLLDDHSIDADAVL FT AVVSEAGETKVAPLDEGSRQVMRDHLFSAGELLRMNQLAPDRASLEQQDKAASGDLFGE FT TESV" FT misc_feature complement(186153..186176) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(186288..189239) FT /transl_table=11 FT /locus_tag="BP3116" FT /product="putative modification methylase" FT /note="Similar in its N-terminal region to Thermoplasma FT volcanium modification methylase TVG1542167 TR:Q978C7 FT (EMBL:AP000996) (616 aa) fasta scores: E(): 1.4e-12, 25.46% FT id in 534 aa. From residue 646 to residue 839 presents low FT similarity to Vibrio cholera RtxA toxin TR:Q9X4W2 FT (EMBL:AF119150) blast scores: E(): 1.7, score: 35 20% id" FT /db_xref="GOA:Q7VUH9" FT /db_xref="HSSP:1G60" FT /db_xref="InterPro:IPR005829" FT /db_xref="UniProtKB/TrEMBL:Q7VUH9" FT /protein_id="CAE43384.1" FT /translation="MATKKTQKPGKSIEQITHTEAKRKNIPTVEHQSVMQHHEQAPVKV FT AYPRANRQWLEELCALHDAGKASPEFQQRLNRDLDPQLIWRGKDQQDWSDLVVNAPPLY FT IQEKVKPKVLIDDLRRQTEERREATAPQQDLLDLFGDFNGLPEGADRTEFYQHEGHWQN FT RMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNAGHIT FT REPEQVKAFRDTWRDGIHSYLTYLRDRLMVARDLLTESGSIFVQIGDENVHRVRALLDE FT VFGDDNCVSTIVFAKTSSSTGDFIGPTFDTLLWYARNKKAVKYRKFLLKKAPGQKGGTG FT YKSVELPDLSRRQLTKDEIESPSSLPVGSKIYFRDNLTSQSVGREKGEGAASWFGVKYQ FT GRVYKPSQTVRWKTNELGFDRLLKSNRVEASSGDNLGYIRNLDDYPAYELTDIWADTLG FT QNQFGGEKIYVVQTSISVVQRCFLMTTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDT FT SRVALALARARIMGARYPFYLLADSREGQLKEAEVTRSAPSSQSTYDNIAHGFVYERVP FT HITLKSIANNAEIDVIWDKAQTVLEPLREALNKTLGKQWQEWEIPREADAKWSEKAKKL FT HTDWWQQRIVRQKEIDASIAAKAEFEYLYDKPYEDKKRVRVAGPFTVESLSPHRVLGVD FT EEDNLIDHVAETQAEYGQDFASLILANLRTAGVQQAHKADKIEFTSLEPWPGDLICAEG FT RYLENGQVKRAGILVGPEFGTVTRADLVDAAREAGDANFDVLIACAFNYDAPASEFSKL FT GRINVLKARMNADLHMAEDLKNTGKGNLFVIFGEPDVDVLDTQGRSIRRYDGKRDVIDV FT PADGQLVVKINGVDVFHPSTGEVRSDGADGIACWFLDTDYNEESFFVRHAYFLGANDPY FT KALKITLKAEIDPDAWATLNSDTSRPFPKPSNGRFAVKVINHLGDEVMKVFKI" FT misc_feature complement(187653..188483) FT /note="HMMPfam hit to PF01555, DNA methylase" FT misc_feature complement(187686..187739) FT /note="ScanRegExp hit to PS00216, Sugar transport proteins FT signature 1." FT misc_feature complement(188652..188672) FT /note="ScanRegExp hit to PS00092, N-6 Adenine-specific DNA FT methylases signature." FT CDS complement(189241..192360) FT /transl_table=11 FT /locus_tag="BP3117" FT /product="putative restriction endonuclease" FT /note="Low similarity to Thermoplasma volcanium TVG1539639 FT protein TR:Q978C8 (EMBL:AP000996) (843 aa) fasta scores: FT E(): 0.0031, 22.79% id in 974 aa" FT /db_xref="GOA:Q7VUH8" FT /db_xref="InterPro:IPR018187" FT /db_xref="UniProtKB/TrEMBL:Q7VUH8" FT /protein_id="CAE43385.1" FT /translation="MSDQFFAQPILNSPYEYPARHWELDTSGQPTQEIVSSRRRADFIT FT PIPKPRKKKGEHEQAGLLFDEGKGLSTAQQAYDHTAIINAVRQEVDAWRKLPPSQWRVT FT PETARLLEHWRNHKFAGVRPFFCQVEAAETAIWLTEVAPQLGKNGERFLDHLDKASNDA FT NPGLLRLALKLATGAGKTTVMAMLIAWQTVNAVRHPQSKRFTRGFLLVAPGLTIKDRLR FT VLLPNDADSYYASREIVPRDMLADMDKAKIVITNYHAFKLRERMELSKGGRRLLQGRTG FT SELDTLETEGQMLQRVMPELMGLKNILAINDEAHHCYREKPASDDDFIDDKGNPLTGDD FT LKAAKEHVKDENEAARLWISGLEAVNRKLGLQQVIDLSATPFFLAGSGYVEGTLFPWTM FT SDFSLMDAIECGIVKLPRVPVADNIPGAEMPIYRELWKHIGKKMPKKGRGKNAQLDPLA FT IPVELQTALEALYGHYRKTYEAWKQAGINVPPCFIVVCNNTATSKLVFDYISGFERTND FT DGSIMRVPGRLELFRNFDEHGEPLARPNTLLIDSEQLESGEALDDNFRGMAADEIGRFK FT REIIERTGDRRQAENLSDSELLREVMNTVGKQGRLGEQIRCVVSVSMLTEGWDANTVTH FT ILGVRAFGTQLLCEQVIGRALRRQSYELNEQGLFDVEYADVFGIPFDFTAKPVVVTPPK FT PRETVTVKALRPERDPLEILFPRVQGYRVELPEEQLEAEFNNDHHLTLTPDMVGATKTH FT NAGIIGEAVELDIKHLGDVRQSTLLMELTKHLLFQHWRDQGQDAPIALFGQLKRIVRQW FT LDECLECKGGTYPAQLMYRELADTACQRITKGITAKELEKGRQVKAILDPFNPTGSTAH FT VRFNTSRPGSERWETLGVENQPKNQVNWVILDSGWEAEFCRVAESHPKVLAYTKNHNLG FT LEVPYRFGSANRIYIPDFIVQVGDGGGNNDPLNLIVEIKGYRREDAKEKKSTMDTYWIP FT GVNHLGTHGRWAFAEFGDVYEMQDDFAKEVEAKFNQMIEAAVPAPGNKEN" FT misc_feature complement(190855..190884) FT /note="ScanRegExp hit to PS00923, Aspartate and glutamate FT racemases signature 1." FT CDS complement(192508..193554) FT /transl_table=11 FT /locus_tag="BP3118" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli O157:H7 hypothetical FT 48.5 kDa protein ECS4465 TR:BAB37888 (EMBL:AP002566) (431 FT aa) fasta scores: E(): 7.4e-09, 27.41% id in 321 aa" FT /db_xref="InterPro:IPR003812" FT /db_xref="UniProtKB/TrEMBL:Q7VUH7" FT /protein_id="CAE43386.1" FT /translation="MHSLTPEYLAALCFDGTQVATLRTLGEYQGKQQLYAAQSPEALKG FT LRQIAVVESTESSNRLEGVVVAPSRLKSLVIRNATPKSRSEQEIAGYRDALALIHESAA FT HMPFSEGVVLQLHTLLYRYMPQAGGRWKATNNDIIERHPDGTSRLRFQPVASHLTPMAM FT ADLTGRYATALDQHLADPLVLVPLAMLDLLCIHPFPDGNGRMSRLLTLLLLYHFDYAVG FT RYISLERIFEETKESYYETLEASSQGWYQGQHDVKPWLDYFWGALLRAYREFEERVGTI FT ERGRGSKGDRVRAEVLGRSLPFSISEIEEACPGVSRDMVRLVLRAMKSEGLIESTGKGR FT GAKWIKQG" FT CDS complement(193896..195023) FT /transl_table=11 FT /locus_tag="BP3120" FT /product="putative integrase" FT /note="Similar to Escherichia coli prophage cp4-57 FT integrase IntA or SlpA or IntX or B2622 SW:INTA_ECOLI FT (P32053) (413 aa) fasta scores: E(): 4.4e-37, 31.93% id in FT 404 aa" FT /db_xref="GOA:Q7VUH6" FT /db_xref="InterPro:IPR002104" FT /db_xref="UniProtKB/TrEMBL:Q7VUH6" FT /protein_id="CAE43387.1" FT /translation="MFLPVKPTGGKHWRWKYRLQGKENLFAIGGFPQVSLAEARAAREK FT ARALLKQGIHPAHERRQVKERNLEALEERKHAKESSFAKVAQAYLAEIKPVFALSSYRT FT KESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAIHVKGDLSAIFEFAVVRG FT LVEANPIPSLRGLLRVPFSESKAAMTREQIQKFYQELRSYRGYPETSLCLRLIALTACR FT PGEAADAEWDEFDFEDALWRRPAAKMKARRDHVSPLSAQAIAVLKDLQCITGGGRYLFP FT HRSGKGFTTPNRLTYAMRDMNLGRGTTPHCWRTTFSTWANENGYRPDAIERQLAHVESN FT KVRATYNKALLLDQRRTLLQDWAEYLKAAEDSGAA" FT misc_feature complement(193956..194480) FT /note="HMMPfam hit to PF00589, Phage integrase family" FT CDS complement(195303..196394) FT /transl_table=11 FT /locus_tag="BP3121" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis (serogroup A) FT hypothetical protein NMA0618 or NMB1838 TR:Q9JQT1 FT (EMBL:AL162753) (363 aa) fasta scores: E(): 1.6e-97, 70.79% FT id in 363 aa, and to Escherichia coli probable GTP-binding FT protein YchF or Gtp1 or B1203 or Z1974 or ECS1708 FT SW:YCHF_ECOLI (P31216) (362 aa) fasta scores: E(): 3.2e-95, FT 68.69% id in 361 aa" FT /db_xref="GOA:Q7VUH5" FT /db_xref="HSSP:1JAL" FT /db_xref="InterPro:IPR002917" FT /db_xref="UniProtKB/TrEMBL:Q7VUH5" FT /protein_id="CAE43388.1" FT /translation="MALQCGIVGLPNVGKSTLFNALTRAGIAAENYPFCTIEPNVGVVE FT VPDPRLDKLAEIVKPERILPATVEFVDIAGLVAGASQGEGLGNQFLSHIRETNAIVNVV FT RCFEDPNVVHVAGKVDPIADIEVIETELALADLQTAEKALHRHSKTARSGDKDAQRLVT FT VLEKCIAQLNQAKPVRGLDLSDEEQTLIAQLCFITAKPAMYVGNVSDDGFTDNPLLERL FT AEFAKSRNAPMVAICAAIESEIVDLPEEDRQAFLSDMGMEEPGLNRLIRGAFTLLGLQT FT YFTAGVKEVRAWTIPIGATAPQAAGVIHTDFERGFIRAQTIAYEDFIACKGEQGAKEAG FT KMRAEGKEYVVKDGDVMNFLFNV" FT misc_feature complement(196347..196370) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(196368..196394) FT /note="ScanRegExp hit to PS00443, Glutamine FT amidotransferases class-II active site." FT CDS complement(196467..197249) FT /transl_table=11 FT /locus_tag="BP3122" FT /product="putative membrane protein" FT /note="no significant database matches" FT /db_xref="GOA:Q7VUH4" FT /db_xref="InterPro:IPR003675" FT /db_xref="UniProtKB/TrEMBL:Q7VUH4" FT /protein_id="CAE43389.1" FT /translation="MSDVTTARQGAARATTFRQDLADCWRFLCRPTLRGRLPGRRADSG FT WASDWRPGVSASRLLAWAAVLWALNLFALGPIAVTVAGAGGAMHRLDPANIPWLTAILW FT APLVEELLFRYGLRRPAQALWFCPMVLPAILWGAQGWTLALVAVAVWLAWLSLRRGRAS FT LAGWDTSWRRYYSYRFGLVFHLVALTFAAVHLNNFSLSQTPVWLLPLLVLPQWATGLVL FT GWMRVRRGIGAAIALHALFNGGPVLMIWLLMTLMPAGA" FT misc_feature complement(join(196491..196556,196578..196634, FT 196665..196721,196785..196850,197007..197072)) FT /note="5 probable transmembrane helices predicted for FT BP3122 by TMHMM2.0 at aa 59-81, 133-155, 176-195, 205-224 FT and 231-253" FT CDS complement(197246..197842) FT /transl_table=11 FT /gene="pth" FT /locus_tag="BP3123" FT /product="peptidyl-tRNA hydrolase" FT /EC_number="3.1.1.29" FT /note="Similar to Escherichia coli peptidyl-tRNA hydrolase FT Pth or B1204 or Z1975 or ECS1709 SW:PTH_ECOLI (P23932) (194 FT aa) fasta scores: E(): 1.4e-32, 50.52% id in 190 aa, and to FT Neisseria meningitidis peptidyl-tRNA hydrolase Pth or FT NMB0795 SW:PTH_NEIMB (Q9K029) (192 aa) fasta scores: E(): FT 2.8e-38, 52.85% id in 193 aa" FT /db_xref="GOA:Q7VUH3" FT /db_xref="InterPro:IPR018171" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUH3" FT /protein_id="CAE43390.1" FT /translation="MSDPIRLIVGLGNPGPDYETTRHNAGFWLADHLADDLRTAFALEK FT GFFGMLAKARHAGENVVLLKPITYMNRSGQSVGAVACFYKLAPEQVLVLHDELDLLPGQ FT VKIKQGGGHAGHNGLKDIQAALGSPNFWRLRIGIGHPRSLGLAQQVADFVLHPPCREEQ FT QQIDTVIDRCRAVVPAMLAGDFALATRELHGANGT" FT misc_feature complement(197264..197833) FT /note="HMMPfam hit to PF01195, Peptidyl-tRNA hydrolase" FT misc_feature complement(197477..197509) FT /note="ScanRegExp hit to PS01196, Peptidyl-tRNA hydrolase FT signature 2." FT misc_feature complement(197750..197791) FT /note="ScanRegExp hit to PS01195, Peptidyl-tRNA hydrolase FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(197971..198597) FT /transl_table=11 FT /gene="rplY" FT /locus_tag="BP3124" FT /product="50S ribosomal protein L25" FT /note="Similar to Xylella fastidiosa 50S ribosomal protein FT L25 XF2643 TR:Q9PA77 (EMBL:AE004071) (208 aa) fasta scores: FT E(): 6.9e-30, 45.5% id in 200 aa, and its N-terminal region FT to Escherichia coli 50S ribosomal protein L25 RplY or B2185 FT SW:RL25_ECOLI (P02426) (94 aa) fasta scores: E(): 2.6e-12, FT 48.88% id in 90 aa" FT /db_xref="GOA:Q7VUH2" FT /db_xref="HSSP:1DFU" FT /db_xref="InterPro:IPR020055" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUH2" FT /protein_id="CAE43391.1" FT /translation="MEFSMKFNATARSVQGSSASRRLRRAGRVPAIVYGGTAAPLNIEL FT DHNEIYHALRKEEFHALILNMVIEGGKTEEVLLRSVQWHAYKPQVMHVDFQRVEANQAL FT HTKVPLHFINAEVSPAVKLSGAIISHVLTELDITCLPALLPQFIEVNLGDLLGGGSIHL FT ADIKLPKGVTFNAHGGDTNPLIAAAVVKGGGAADEGDAAAEQPAA" FT misc_feature complement(198100..198132) FT /note="ScanRegExp hit to PS00626, Regulator of chromosome FT condensation (RCC1) signature 2." FT misc_feature complement(198313..198579) FT /note="HMMPfam hit to PF01386, Ribosomal L25p family" FT CDS complement(198708..199658) FT /transl_table=11 FT /gene="prsA" FT /gene_synonym="prs" FT /locus_tag="BP3125" FT /product="ribose-phosphate pyrophosphokinase" FT /EC_number="2.7.6.1" FT /note="Similar to Escherichia coli, and ribose-phosphate FT pyrophosphokinase PrsA or Prs or B1207 or Z1978 or ECS1712 FT SW:KPRS_ECOLI (P08330) (314 aa) fasta scores: E(): 2.6e-77, FT 64.93% id in 308 aa, and to Neisseria meningitidis putative FT ribose-phosphate pyrophosphokinase Prsa or NMA1093 or FT NMB0875 TR:Q9JQV4 (EMBL:AL162755) (327 aa) fasta scores: FT E(): 7.5e-87, 72.06% id in 315 aa" FT /db_xref="GOA:Q7VUH1" FT /db_xref="InterPro:IPR005946" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUH1" FT /protein_id="CAE43392.1" FT /translation="MANDSFMIFTGTANTRLAVDVVNHLDMSLGKMTVGRYSDGEVMVE FT INENVRGKDVFVLQPTCAPTNDNLMEIMVMVDALRRASAGRITAAIPYFGYARQDRRPR FT SARVAISAKVVANMLQVAGVDRVLTMDLHADQIQGFFDIPVDNIYAGPILLGDIWRRNF FT SNLVVVSPDIGGVVRARALAKQLEADLAIIDKRRPRANVSEVMNIIGEVDGRTCIIMDD FT MVDTAGTLCKAAQALKDRGAGAVYAYCTHPVLSGGAIERIETSSLDELVVTDTIPLSEQ FT AQACGKIRQLSCAALLGETILRISNAESVSSLFAD" FT misc_feature complement(198837..199247) FT /note="HMMPfam hit to PF00156, Phosphoribosyl transferase FT domain" FT misc_feature complement(198972..199010) FT /note="ScanRegExp hit to PS00103, Purine/pyrimidine FT phosphoribosyl transferases signature." FT misc_feature complement(199221..199268) FT /note="ScanRegExp hit to PS00114, Phosphoribosyl FT pyrophosphate synthetase signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature complement(199269..199298) FT /note="ScanRegExp hit to PS00339, Aminoacyl-transfer RNA FT synthetases class-II signature 2." FT tRNA complement(199789..199865) FT /note="tRNA Gln anticodon TTG, Cove score 77.70" FT CDS complement(199867..200766) FT /transl_table=11 FT /gene="ispE" FT /gene_synonym="ipk" FT /locus_tag="BP3126" FT /product="4-diphosphocytidyl-2-C-methyl-D-erythritol FT kinase" FT /EC_number="2.7.1.-" FT /note="Similar to Escherichia coli FT 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase IspE or FT Ipk or B1208 or Z1979 or ECS1713 SW:ISPE_ECOLI (P24209) FT (283 aa) fasta scores: E(): 2.8e-41, 49.23% id in 260 aa, FT and to Xylella fastidiosa FT 4-diphosphocytidyl-2-c-methyl-D-erythritol kinase IspE or FT XF2645 SW:ISPE_XYLFA (Q9PA75) (298 aa) fasta scores: E(): FT 1.9e-43, 54.68% id in 256 aa" FT /db_xref="GOA:Q7VUH0" FT /db_xref="InterPro:IPR014721" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUH0" FT /protein_id="CAE43393.1" FT /translation="MTLYDVPAPAKLNLFLHVVGRRADGYHLLQTAFRFIDLADTLHFE FT ARADGAIGRAYELPGVAESDDLVMRAARSLQRATGTRQGAQIGLHKRIPQGGGLGGGSS FT DAATTLIALNRLWGTGLSRSQLMQLALPLGADVPVFVFGQSAFAQGVGEDLTAVALSPA FT AYLVVQPDAGVPTAVIFSDPDLTRDCASVTIADFLALPTSCFGRNDLEPVVLRRYPEVS FT GAVRWLFEHGLRVRMSGSGACLFAEFPTLPEAVLAQEEITATMRVAGKTTSHTHPGFRL FT VQASTGLTEHPLRNWIAS" FT CDS complement(200815..201414) FT /transl_table=11 FT /locus_tag="BP3127" FT /product="putative outer membrane lipoprotein" FT /note="Similar to Pseudomonas aeruginosa outer-membrane FT lipoprotein LolB precursor or HemM or PA4668 SW:LOLB_PSEAE FT (P42812) (205 aa) fasta scores: E(): 4.7e-09, 32.63% id in FT 190 aa, and to Escherichia coli outer-membrane lipoprotein FT LolB precursor or HemM or B1209 or Z1980 or ECS1714 FT SW:LOLB_ECOLI (P24208) (207 aa) fasta scores: E(): 9.9e-07, FT 31.91% id in 141 aa" FT /db_xref="GOA:Q7VUG9" FT /db_xref="InterPro:IPR004565" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUG9" FT /protein_id="CAE43394.1" FT /translation="MSACPAPRSPVRWLHAFTLFLLLAVLAGCVSVPKPMAGAGEDVFS FT RVGRFAITVTESDGKQQAVQGGFAWRDDGGSYLLDLTNPLGSTEARVEGRPGMAVLTRA FT NGERLAAEHPDALAEDALGSPVPVTGLRDWLRGRLMAGAAPDGLERDAQGRPTAFEQDG FT WNARLSRYDAQGPQLLVLQRQEPGRRILVRLVITQP" FT misc_feature complement(201319..201375) FT /note="1 probable transmembrane helix predicted for BP3127 FT by TMHMM2.0 at aa 13-32" FT misc_feature complement(201328..201360) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(201411..203297) FT /transl_table=11 FT /locus_tag="BP3128" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PA4667 SW:YAG7_PSEAE (P42810) (590 aa) fasta FT scores: E(): 9.6e-24, 28.9% id in 609 aa, and to Neisseria FT meningitidis putative periplasmic protein NMA1090 TR:Q9JUX9 FT (EMBL:AL162755) (612 aa) fasta scores: E(): 1.4e-18, 24.55% FT id in 619 aa" FT /db_xref="GOA:Q7VUG8" FT /db_xref="InterPro:IPR016160" FT /db_xref="UniProtKB/TrEMBL:Q7VUG8" FT /protein_id="CAE43395.1" FT /translation="MSQCKIINCVYEDCAINRTGRVKLSLKHINFGVAALALALAGLQS FT LPAQAAEVRPRDATGPRLIQPSKQPETEVIRLRPGQLPYVSLTADIFYRIVGAELAAQR FT GMYGTAAATLVTLARETGDPRLARRGLEFQLAGGNLPGALDAARAWSSLAPNDIEASST FT ELALAAANGETSGLATALRKRIDTARDKPAAIVQAMGVLSRLNDRRLALRILDESLSDS FT ARKLPAAHLALADVAQAAGDYPRAANEAYAALAADPKSEAAAQRVLEYGAKVDATRAQH FT QARAFINRNPDARKLRLMLAGQIADGGDYDGALAELQAMSRRSPEDFDLMFMQAQLAYK FT AGRLDQARGYLQQYLDVQNQRQMATAPGATDAGAAAADAHVLLSRIAEDQGRYDEAIRE FT LGRIDDPAMRYSAHMRQATLRARQGRIDGALAMVDRADPQDDEERTLGVLTKAQILRDA FT DQVDRAVAILVAADKAMPDTVEIKYELAMLYERQGRIDQLERLLREVIALDPDHAHAYN FT ALGYTLADRNQRLPEALDLITQALELSPEDPFILDSMGWVKFRMGEPSAAIEYLKRAYA FT LRPEADIAAHLAEVLWVQGERDSATELLRTAYAKDPKNRALLDTMRRLEVRP" FT misc_feature complement(201555..201656) FT /note="HMMPfam hit to PF00515, TPR Domain" FT misc_feature complement(201657..201761) FT /note="HMMPfam hit to PF00515, TPR Domain" FT misc_feature complement(201762..201863) FT /note="HMMPfam hit to PF00515, TPR Domain" FT misc_feature complement(202215..202316) FT /note="HMMPfam hit to PF00515, TPR Domain" FT misc_feature complement(202518..202619) FT /note="HMMPfam hit to PF00515, TPR Domain" FT misc_feature complement(202761..202784) FT /note="ScanRegExp hit to PS00687, Aldehyde dehydrogenases FT glutamic acid active site." FT misc_feature complement(203148..203297) FT /note="Signal peptide predicted for BP3128 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.999 between residues 50 and 51" FT CDS 203296..204123 FT /transl_table=11 FT /gene="mutM" FT /gene_synonym="fpg" FT /locus_tag="BP3129" FT /product="formamidopyrimidine-DNA glycosylase" FT /EC_number="3.2.2.23" FT /note="Similar to Escherichia coli formamidopyrimidine-DNA FT glycosylase MutM or Fpg or B3635 SW:FPG_ECOLI (P05523) (269 FT aa) fasta scores: E(): 1.6e-47, 50.54% id in 275 aa, and to FT Neisseria meningitidis formamidopyrimidine-DNA glycosylase FT MutM or Fpg or NMB1295 SW:FPG_NEIMB (P55044) (275 aa) fasta FT scores: E(): 2.5e-49, 49.1% id in 279 aa" FT /db_xref="GOA:Q7VUG7" FT /db_xref="InterPro:IPR012319" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUG7" FT /protein_id="CAE43396.1" FT /translation="MPELPEVETTRRGIDTVITGRTLRRLVVREARMRWPIPPALPDLL FT AGRTVLECGRRGKYLLLRFDHGVQIVHLGMSGSLRRVPEQEAPRKHDHVDWVFDHAVLR FT LHDPRRFGAVLWHPDEAGPIAAHPLLARLGIEPFDPRFDGRWLHAYFRGRRVAIKQALL FT AGDAVVGVGNIYASESLFRAGIDPRTAAQRVSAARCDRLAAAIRATLSDALDSGGSTLR FT DYVGASGEPGAYFAIHAAVYERAGLPCRVCGTPIRRLVQGQRATYFCPSCQKR" FT misc_feature 203392..204114 FT /note="HMMPfam hit to PF01149, Formamidopyrimidine-DNA FT glycosylase" FT misc_feature 204040..204114 FT /note="ScanRegExp hit to PS01242, Formamidopyrimidine-DNA FT glycosylase signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 204214..205167 FT /transl_table=11 FT /locus_tag="BP3130" FT /product="putative cyclase" FT /note="Similar to Aquifex aeolicus beta lactamase precursor FT CphA1 or AQ_1798 TR:O67667 (EMBL:AE000757) (326 aa) fasta FT scores: E(): 3.2e-20, 28.62% id in 297 aa" FT /db_xref="GOA:Q7VUG6" FT /db_xref="InterPro:IPR001279" FT /db_xref="UniProtKB/TrEMBL:Q7VUG6" FT /protein_id="CAE43397.1" FT /translation="MSKQFASHADLEDKVVSFEKLSDNAYAYTAEGDPNTGIIVGDDAV FT MVVDTQATPVMAQDVIRRVREVTDKPIKYILLSHYHAVRVFGASAYGAQEILASRDTYD FT LIAERGEQDKASEIGRFPRLFRNVESIPPGLVWPTMTFKGEMTVDLGNLEVKLLQVGRG FT HTKGDTIAWLPEQKILFAGDLVEYQSTPYCGDCYFREWPATLDALAGFEAEKMVPGRGP FT ALKSATEVRQGLAGTRAFLTDLYAAVNRGVADGKDLKTIYREVYDFMKPRYSQWVIFDH FT CMPFNVSRAYDEATGHYDPRIWTDKRDIEMWQQLEG" FT misc_feature 204298..204873 FT /note="HMMPfam hit to PF00753, Metallo-beta-lactamase FT superfamily" FT CDS 205269..206948 FT /transl_table=11 FT /locus_tag="BP3131" FT /product="putative oxygenase" FT /note="Similar to Streptomyces argillaceus oxygenase MtmOII FT TR:O86481 (EMBL:AJ007932) (531 aa) fasta scores: E(): FT 4.6e-36, 33.57% id in 557 aa, and to Escherichia coli FT 3-(3-hydroxy-phenyl)propionate hydroxylase MhpA or B0347 FT SW:MHPA_ECOLI (P77397) (554 aa) fasta scores: E(): 6.3e-23, FT 27.63% id in 532 aa" FT /db_xref="GOA:Q7VUG5" FT /db_xref="InterPro:IPR003042" FT /db_xref="UniProtKB/TrEMBL:Q7VUG5" FT /protein_id="CAE43398.1" FT /translation="MGDIDYQAIEFAYTKCADQQRDTPARHCVIVVGAGPVGLTTALDL FT ARQGLRVVVLDDDYRLSTGSRAICFAKRTLEIWDRLGVGQRMVDKGVSWNVGKVFFRDQ FT EVWRFDLLPEPGHRRPAFINLQQYYAEGYLHELASAQPGIELRWKSKVVGVAQQADGVQ FT VTVDTPDGAYALHADWLVACDGARSPVRKLLDLETHGRVFKDRFLIADVKMAADYPAER FT WFWFDPPFHPNQSVLLHMQPDNVWRIDFQLGWNADPVEAVKPENVLPRIRALLGPDADF FT ELEWVSVYTFACERMDHFRHGRVVFAGDSAHRVSPFGARGANSGVQDAENLAWKLKLVL FT AGHAPESLIDSYAAEREYAADENILNSSRSTDFITPKSEVSRTFRNAVLNLARQHPFAR FT TLVNSGRLSVPAAYADSPLNTPDSDPYAGTMRPGAVALDAPVRADAQPGWWLSQLDGGF FT ALALFCGAETPRADMLDALRALQQDEVPVQPILVCDAGAAPAAAPAGVRVVEDSEGWLA FT RRYDARPGTCYLIRPDQHIAARFRAFDAQAVRRALARAIGRA" FT misc_feature 205341..205373 FT /note="ScanRegExp hit to PS00639, Eukaryotic thiol FT (cysteine) proteases histidine active site." FT misc_feature 205353..205772 FT /note="HMMPfam hit to PF01494, FAD binding domain" FT misc_feature 205794..206372 FT /note="HMMPfam hit to PF01360, Monooxygenase" FT CDS 206960..207169 FT /transl_table=11 FT /locus_tag="BP3132" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein rsp0701 rsp0701 or rs01748 SWALL:Q8XRY0 FT (EMBL:AL646080) (68 aa) fasta scores: E(): 2.6e-13, 69.84% FT id in 63 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VUG4" FT /protein_id="CAE43399.1" FT /translation="MPLITTPNLAGPDNFYEALIDTHRDLSDEQSRELNAALILLLANH FT IGDMAVLRAALEHARQSVVAPPAP" FT CDS complement(207179..208087) FT /transl_table=11 FT /locus_tag="BP3133" FT /product="putative LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas putida transcriptional FT activator protein NahR SW:NAHR_PSEPU (P10183) (300 aa) FT fasta scores: E(): 5.1e-46, 43.81% id in 299 aa" FT /db_xref="GOA:Q7VUG3" FT /db_xref="InterPro:IPR005119" FT /db_xref="UniProtKB/TrEMBL:Q7VUG3" FT /protein_id="CAE43400.1" FT /translation="MAELRNIDLNLLVIFQRLLQERSISAVARQLDLSQPAVSNALRRL FT RAACGDDLFVRTAQGMQPTPHAERLGGPVGEALALLSHALDATQDFEPRASTRRFRIAM FT SDVGEIHFMPRLMDQCARHAPGVRIDSLRLQGADLQREMDAGRVDLAIGAFADLGGAVM FT QRMLFRQGYATLYRQGHPSAHEGMSLKAFRAAHHLVVSHATPYGQVNQSLERAGVTLGE FT HFSVPHFAAVPYIVSTTDLLATVPQKLAASAAPHFGLGLLTPPLRMPTLQTNLYWHRRF FT QRDSGSQWLRALIVQAFADAP" FT misc_feature complement(207188..207598) FT /note="HMMPfam hit to PF01046, NodD transcription activator FT carboxyl terminal region" FT misc_feature complement(207632..208063) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT CDS 208270..209568 FT /transl_table=11 FT /gene="hmgA" FT /locus_tag="BP3134" FT /product="homogentisate 1,2-dioxygenase" FT /EC_number="1.13.11.5" FT /note="Similar to Emericella nidulans homogentisate FT 1,2-dioxygenase HmgA SW:HGD_EMENI (Q00667) (448 aa) fasta FT scores: E(): 5.1e-89, 53.33% id in 435 aa, and to FT Caulobacter crescentus homogentisate 1,2-dioxygenase Cc2532 FT TR:Q9A5B8 (EMBL:AE005921) (425 aa) fasta scores: E(): FT 6.5e-109, 62.11% id in 425 aa" FT /db_xref="GOA:Q7VUG2" FT /db_xref="HSSP:1EYB" FT /db_xref="InterPro:IPR005708" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUG2" FT /protein_id="CAE43401.1" FT /translation="MSLHYQTGFGNACATEALPGALPAGRNSPQICPYGLYAEQLSGTA FT FTAPRAENRRSWLYRIRPGVQHLPFAPFAGAQRWLSDFGRQPVTPNQLRWSPLPMPDAP FT TDFIDGMHTWGGNGGPEEQSGVGIHLYAANRSMQGRFFYNADGEMLIVPQQGRLRLATE FT LGLIDIEPYEIAVVPRGVRLRVELLDDVARGYVLENFGTAMRLPELGPIGSNCLANARD FT FQIPVAWYEDVEGDFELIAKFTGGFWRAPITHSPLNVVAWHGTHAPYKYDLRNFNTVGS FT ISYDHPDPSIFTVLTSPSDTPGTANMDFAIFPPRILAMENTFRPPWFHRNIASEFMGLI FT HGVYDAKAEGFAPGGASLHNCMSGHGPDADTFEKASHADTSQAHYIRDTMAFMFETRRV FT IRPTAQALASPQRQDDYYQCWQGLQKHFDPEQA" FT CDS 209677..210990 FT /transl_table=11 FT /gene="fahA" FT /gene_synonym="fah" FT /locus_tag="BP3135" FT /product="fumarylacetoacetase" FT /EC_number="3.7.1.2" FT /note="Similar to Emericella nidulans fumarylacetoacetase FT Fah or FahA TR:Q00770 (EMBL:L41670) (431 aa) fasta scores: FT E(): 5.9e-54, 41% id in 439 aa, and to Pseudomonas FT aeruginosa fumarylacetoacetase FahA or Pa2008 TR:Q9I2A2 FT (EMBL:AE004627) (432 aa) fasta scores: E(): 9.9e-93, 57.84% FT id in 427 aa" FT /db_xref="GOA:Q7VUG1" FT /db_xref="HSSP:1HYO" FT /db_xref="InterPro:IPR015377" FT /db_xref="UniProtKB/TrEMBL:Q7VUG1" FT /protein_id="CAE43402.1" FT /translation="MSKLNETHDPALQSWVASANAADTSFPIQNLPFAAFRRKGTQDPF FT RPGVAIGDAIVDLAALAAQAPFDGAAAAALAACQGERLNALMALDQAHWSALRLALSRA FT LRAGSALQARIEPLLVAQAEAEYTTPAHIGDYTDFYISVHHATAVGKQFRPDNPLLPNY FT KWVPIGYHGRASSIGVDQRFARPVGQTRPAAEGEAPQFGPCQRLDYELELGIFVGRGNA FT QGERIALGEAESHVFGLCILNDWSARDIQAWEYQPLGPFLAKNFASTISPWIVTLEALE FT PFRAAWTRDAADPQPLPYLESAENRAHGAFDVQMEVLISTEQSRAKHAQPALLSRSNFR FT DAYWNIAQLVAHHTVNGCNLQPGDMMGTGTLSGPQASEAGSLLELTNGGKQPLDLPWGE FT QRTFLQDGDQIIMRAECSKPGYPRIGFGDCVGTVLAAK" FT misc_feature 210142..210813 FT /note="HMMPfam hit to PF01557, Fumarylacetoacetate (FAA) FT hydrolase family" FT CDS complement(211116..213077) FT /transl_table=11 FT /locus_tag="BP3136" FT /product="putative sulfatase" FT /note="Similar to Haemophilus influenzae hypothetical FT protein HI1246 SW:YC46_HAEIN (P44135) (647 aa) fasta FT scores: E(): 1.1e-113, 47.61% id in 628 aa" FT /db_xref="GOA:Q7VUG0" FT /db_xref="InterPro:IPR017849" FT /db_xref="UniProtKB/TrEMBL:Q7VUG0" FT /protein_id="CAE43403.1" FT /translation="MRVFFCNEADEALALPPPTRNPVRRLTIRFAIAILVLLTLSRLGL FT SAWQWERVQAAGGLGPIMLGGLRMDLRLLALVLALPAVLAPWFGHRAWAASATAWWYRV FT WWMLFVLLEVSTPQFIAEYDTRPNRLYFEYLVHPREVASMLWEGYKGVLLASFVVLVLA FT AWLAVRLFPTGRQDGFMKWWKRPFVTLAVLAVVVLAARGTLQHRPINASMVAFSSDAMV FT NTLPLNSLGNVLDAAYRMQDERSSAALYPPMKTEEMNRIVRAAAGLEDPPLDARYPSLH FT KQTATVRRDKPLNLVIILQESLGAQYVGSLGGRDLTPQLDRLAKDGWMFNRAYATGTRS FT VRGLEAVTAGFLPTVAEAVLKLPRSQTGFFTLADLLGRHGFHSRFIYGGEAHFDNMRGF FT FLGNGFNEVIDRQSFVDPVFVGSWGASDEDMFNQLDRLLRADDGKSTFTLAFSVSNHSP FT WEYPAGRIEPVGDPASVDNTVRYADWAMGQFFDKARKAPYWDNTVFLVIADHDSRVYGA FT NLVPVRHFQIPALILGGTVPPRSDDRIVSQIDMGPTLLSLIGLDNVNPMLGSDLTQRDP FT NRAIMQYGDNFGYLKGDSLLVIEPGKDPREYRYTAAASMRDEKYVPIDLDPALRDEALA FT FALWPSWAYREERYKLPK" FT misc_feature complement(211128..212201) FT /note="HMMPfam hit to PF00884, Sulfatase" FT misc_feature complement(join(212463..212519,212559..212624, FT 212715..212780,212802..212867,212928..212993)) FT /note="5 probable transmembrane helices predicted for FT BP3136 by TMHMM2.0 at aa 28-50, 70-92, 99-121, 151-173 and FT 186-205" FT CDS complement(213157..214479) FT /transl_table=11 FT /locus_tag="BP3137" FT /product="putative two-component system sensor protein" FT /note="Similar to Pseudomonas aeruginosa probable FT two-component sensor PA4380 TR:Q9HW22 (EMBL:AE004854) (426 FT aa) fasta scores: E(): 2.4e-23, 29.38% id in 439 aa" FT /db_xref="GOA:Q7VUF9" FT /db_xref="HSSP:1I58" FT /db_xref="InterPro:IPR003660" FT /db_xref="UniProtKB/TrEMBL:Q7VUF9" FT /protein_id="CAE43404.1" FT /translation="MSARPVSGNGSGSLTQRVVWALTGSVALFVTALVLLSYLTFDKME FT DDLVNDILSTETDRLIQHVAADDHFRPDRGARELGGAMRAWLVRAGAAQSDLPPPLHGL FT GVGMHLLEPGAETWHVMVADVEDARIYVLYDATDNEARVHDFGLFVLGVGAICIVAAYG FT ISRRVAGVAVGPLVELTRRLANWAPGAPDLAVTRDDEAGRLIEAFNRVQNQVDRSIARE FT REFSVNVSHEVRTPLAAIRSDSEMMLLAAGLDEGQRTRLVRIVANVDNVSTALESARAM FT ARDEPRAPERVDLAACMDDAWRGLEVNAEAAGLAFANRIPAGSAHVLDRYAMLTVLRNL FT VRNAIEHAAPATLTAALRPDGALELRDDGRGIAAEELPFVFQRFYSGRLRDSADNGSNE FT LPRGLGLAIAKRVCDMQGWQLSVDSERDGPARGTRFVLRFT" FT misc_feature complement(213163..213498) FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, phytochrome-like ATPase" FT misc_feature complement(213619..213819) FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain" FT misc_feature complement(213829..214032) FT /note="HMMPfam hit to PF00672, HAMP domain" FT misc_feature complement(join(213985..214041,214360..214425)) FT /note="2 probable transmembrane helices predicted for FT BP3137 by TMHMM2.0 at aa 18-40 and 146-165" FT CDS complement(214476..215186) FT /transl_table=11 FT /locus_tag="BP3138" FT /product="putative two-component system response regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT two-component response regulator PA4381 TR:Q9HW21 FT (EMBL:AE004854) (227 aa) fasta scores: E(): 8.3e-34, 47.57% FT id in 227 aa" FT /db_xref="GOA:Q7VUF8" FT /db_xref="HSSP:1B00" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VUF8" FT /protein_id="CAE43405.1" FT /translation="MTAAPANRHFRVLIVEDDLTIAANLYDYLQVRGFVPDAAYDGRSA FT LALLDEHPFDAMVLDVGLPGMDGHAVLHALRVERRAALPVLMLTARDGLDDKLAGFAHG FT ADDYLTKPFALAEVEARLLALIQRSRGAVVDSLRSFGPLQFDSATREVAVHGKPVHLTR FT KCGMIVEVLLRDPGRVVSREQLENALWGDDPPSSDALRSQVHLLRRALADAGFDGIETV FT HGTGWRLALPAGGA" FT misc_feature complement(214509..214718) FT /note="HMMPfam hit to PF00486, Transcriptional regulatory FT protein, C terminal" FT misc_feature complement(214821..215159) FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain" FT CDS complement(215204..216619) FT /transl_table=11 FT /locus_tag="BP3139" FT /product="putative oxidoreductase" FT /note="Similar to Agrobacterium tumefaciens Agr_C_1314p FT TR:AAK86533 (EMBL:AE008006) (478 aa) fasta scores: E(): FT 3.2e-83, 49.46% id in 463 aa" FT /db_xref="GOA:Q7VUF7" FT /db_xref="InterPro:IPR006094" FT /db_xref="UniProtKB/TrEMBL:Q7VUF7" FT /protein_id="CAE43406.1" FT /translation="MTLPRELQALLGPSHVLTGDDAEPFLQDWRRRYRGRALAVARPGS FT AEEVAAVVRLCQAHGAPLVPQGGNTGLCGGATPDDSGSAVVLSTTRLNRVRAIDTDNDT FT ITVEAGCVLQAVQQAAEQAGRLFPLSLAAEGSCTIGGNLATNAGGTQVLRYGNARELTL FT GLEVVTAEGEIWNGLRGLRKDNTGYDLRDLYVGSEGTLGIITAATLKLFPLPVATCTAL FT LALDSIDAAVEVLSRARGGFGASLTGFELMAADCLQAVTRLFPQQRLPFDGASADSPWF FT ALLELSDSESEAHARARFEAVVGAAIEDGLVADAAIAENLAQSQALWHLRESIPLAEAE FT LGKSIKHDVSIPISAIAAFVHQTNGLLQGRFPGVRNVIFGHLGDGNLHYNVARGPGQTE FT ADLLGLQSQVYDVVHDSVQAFAGSISAEHGVGQLKRDELPRYKSAVELALMKRLKVALD FT PRGLLNPGKVLQA" FT misc_feature complement(215588..215611) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(216002..216607) FT /note="HMMPfam hit to PF01565, FAD binding domain" FT CDS complement(216711..217283) FT /transl_table=11 FT /locus_tag="BP3140" FT /product="hypothetical protein" FT /note="Similar to central region of Streptomyces coelicolor FT putative acetyl/propionyl CoA carboxylase, alpha subunit FT SCD10.13 TR:Q9K3W3 (EMBL:AL359988) (614 aa) fasta scores: FT E(): 0.033, 30.33% id in 178 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VUF6" FT /protein_id="CAE43407.1" FT /translation="MAPGRVDLTAGGERRLDIPVHAGIDGSVEAGRAWERCVWRAARVL FT IAECPAPRLSARLEATLRGVAVRIARDRGWRGIGTVVFSLDVGTGMFRMIEARLCGLQQ FT GGPAADAASGGHALEVRISACADSGRRGAHLLTYGATRGEALRRAYQALAKLPGLAQAD FT RAFLMDRIASPAFCSGLTGSQLDRIAS" FT CDS 217601..218983 FT /transl_table=11 FT /gene="pgm" FT /locus_tag="BP3141" FT /product="phosphoglucomutase" FT /EC_number="5.4.2.8" FT /note="Identical to the Bordetella bronchiseptica FT phosphoglucomutase Pgm TR:Q9S3V9 (EMBL:AF171632) (392 aa) FT fasta scores: E(): 1.1e-149, 99.23% id in 392 aa, and FT similar to Pseudomonas aeruginosa phosphomannomutase AlgC FT or PA5322 SW:ALGC_PSEAE (P26276) (462 aa) fasta scores: FT E(): 3.9e-93, 53.26% id in 460 aa, and to Neisseria FT meningitidis phosphoglucomutase Pgm or NMB0790 FT SW:PGMU_NEIMB (P40391) (460 aa) fasta scores: E(): 1.2e-91, FT 54.54% id in 440 aa, and to Neisseria gonorrhoeae FT phosphoglucomutase PGM SW:PGMU_NEIGO (P40390) (460 aa) FT fasta scores: E(): 1.3e-90, 53.52% id in 454 aa" FT /db_xref="GOA:Q7VUF5" FT /db_xref="HSSP:1K2Y" FT /db_xref="InterPro:IPR016066" FT /db_xref="UniProtKB/TrEMBL:Q7VUF5" FT /protein_id="CAE43408.1" FT /translation="MAHPFPASVYKAYDIRGSVPDQLDPVFARALGRALAASARAQGIG FT ALVVGRDGRLSSPDLAGALQEGIMEGGVDTLDIGQVPTPLVYFAAHIQGTGSGVAVTGS FT HNPPQYNGFKMMMGGQALYGPAVQALRPAMLAPAAAPGTWGERRQLDVVPAYIERIVSD FT VKLARPMKIAVDCGNGVAGALAPQLFRALGCEVDELYCEVDGTFPNHHPDPAEPRNLQD FT LIAHVTSTDCELGLAFDGDGDRLGVVTKSGQIIWPDRQLILFARDVLARCPGATIIYDV FT KCSQHVGVAIEQSGGVPLMWQTGHSLVKAKLAETGAPLAGEMSGHIFFKERWYGFDDGL FT YTGARLLEIVSRETDASRPLEALPQALSTPELKLEMAEGEPHALIAALQQQGEFASASR FT LVTIDGVRAEYPDGFGLARASNTTPVVVLRFEAETEPGLARIQQEFRQQLLRLAPQAKL FT PF" FT misc_feature 217616..218917 FT /note="HMMPfam hit to PF00408, FT Phosphoglucomutase/phosphomannomutase, C-terminal domain" FT misc_feature 217892..217921 FT /note="ScanRegExp hit to PS00710, Phosphoglucomutase and FT phosphomannomutase phosphoserine signature. Confirmed by FT InterPro eMOTIF pattern match." FT CDS 218990..220555 FT /transl_table=11 FT /gene="pgi" FT /locus_tag="BP3142" FT /product="glucose-6-phosphate isomerase" FT /EC_number="5.3.1.9" FT /note="Similar to Homo sapiens glucose-6-phosphate FT isomerase Gpi TR:Q9BSK5 (EMBL:M61214) (558 aa) fasta FT scores: E(): 1.7e-68, 42.26% id in 504 aa, and to FT Escherichia coli glucose-6-phosphate isomerase Pgi or B4025 FT or Z5623 or Ecs5008 TR:AAG59224 (EMBL:X15196) (549 aa) FT fasta scores: E(): 3.5e-61, 37.69% id in 520 aa. Also FT similar to BP1971, 40.891% identity (43.238% ungapped) in FT 516 aa overlap." FT /db_xref="GOA:Q7VUF4" FT /db_xref="HSSP:1IAT" FT /db_xref="InterPro:IPR018189" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUF4" FT /protein_id="CAE43409.1" FT /translation="MPTPLPSSSAWLAFADAARHSSRRGARLRVIEAAGLRVDLTAQAH FT SDDLDSAAEDLLAQQDFDNARAQLFDGGPANWTEHRPAWHTALRAARPPTPVAGAILGE FT RDRLRRFVQDADMRGAYRHVLHLGIGGSDWGPRMVTRALRHNGLKREVRFASNVDSHAV FT ADALHHLDPHDTLIIVASKSFTTTEPLANAEVAMNWLRNAGVADPVRQVVAITANVDAA FT LDFGISPQHIFRFWDWVGGRYSLWSAIGLPVALALGCDALDELLAGAAAMDQHFLHTPM FT RRNAPLQMALAGVANRSVLGYGSLAITPYDSRLTHLVPWAQQLEMESLGKVAGHDGSPA FT GVPTGPVVWGMTGTDCQHTFFQWLHQDTAGAPVDFIVCEQADHPYDHFHKLLIANCLAQ FT RAALLRGKPFDEALKEARLVESDPQQAEILAHHRVHPGGRPSTLIMLPRLSAHALGALL FT AMYEHKVFAQGVLWGINPFDQWGVEYGKALARNIIRELENPSSEVNQQDPSTRYWIDAL FT RKQP" FT misc_feature 219104..220531 FT /note="HMMPfam hit to PF00342, Phosphoglucose isomerase" FT misc_feature 219698..219739 FT /note="ScanRegExp hit to PS00765, Phosphoglucose isomerase FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 219734..219766 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 220394..220447 FT /note="ScanRegExp hit to PS00174, Phosphoglucose isomerase FT signature 2. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(220563..221693) FT /transl_table=11 FT /locus_tag="BP3143" FT /product="putative glycosyltransferase" FT /note="Similar to Pseudomonas aeruginosa WbpU TR:Q9RHD0 FT (EMBL:AF035937) (376 aa) fasta scores: E(): 1e-80, 62.06% FT id in 369 aa, and to Vibrio cholerae Orf139-23 protein FT TR:O87140 (EMBL:AB012956) (376 aa) fasta scores: E(): FT 7.4e-67, 53.63% id in 371 aa" FT /db_xref="GOA:Q7VUF3" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7VUF3" FT /protein_id="CAE43410.1" FT /translation="MTSPRRLLFVVNNPAFFLSHRLPLAEAARADGYEVHVATMDGPSV FT PDIVARGFAHHVIPMTRSGKQPLQELRSVWALVRLFRRLRPGLVHLVTIKPVLYGGIAA FT RLAGVPAMVAAISGLGFVFVAGGLKARLLRAAVGRLYRLALGHRNSRIVFQNTADRDVL FT ARLGAVRAEQVVMIRGSGVDLGQYRVVPEPAAPVTALMAARLLRDKGVREFVEAARLLR FT QRGLSVRMQLAGGVDPGNPASITPEQAAQWQDEGCVEVLGERKDIAALYGAAHMAVLPS FT YREGLPKSLLEAAACGRAVVTTDVPGCRDAIDPDVTGLLVPPRDAPALADAIARLAEDA FT SLRQRMGAAGRALAEREFGIEDVCRRHLAIYRALAR" FT misc_feature complement(220575..232050) FT /note="Region possibly encoding a lipopolysaccharide FT O-antigen" FT misc_feature complement(220635..221096) FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1" FT misc_feature complement(221310..221375) FT /note="1 probable transmembrane helix predicted for BP3143 FT by TMHMM2.0 at aa 106-128" FT CDS complement(221690..222844) FT /transl_table=11 FT /locus_tag="BP3144" FT /product="putative glycosyltransferase" FT /note="Similar to Pseudomonas aeruginosa WbpT TR:Q9RHD1 FT (EMBL:AF035937) (383 aa) fasta scores: E(): 7.7e-49, 43.55% FT id in 388 aa" FT /db_xref="GOA:Q7VUF2" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7VUF2" FT /protein_id="CAE43411.1" FT /translation="MTRILRVMHVITGLGQGGAESVLFRLATWPDQRVRHSVISLTDEG FT VYGTRLRAAGVPVHALGMPRGRVTLGGLLALRALLRRERPDAVQTWMYHADLIGGVAAR FT LAGIRAVAWGIRNSGEHLDRSSRSARLVLKLCARLSARLPAAIVCAAQDAATRHRQHGY FT DGARMVVIPNGYDLSRYAPDAQARERMRSLWGVAPGTPLVGCVARWDPLKDHANLLAAL FT GGLVREGRDRGLQCALVGRGMSPGNAGLAALIDAEGLRGRVLLAGPSDDVPAVMNALDL FT HVLSSCAEGFPNVVAEAMACGTPCVATDVGDAAYIVGDTGGVAPAQQPAALAAAIEAAL FT AGIAARGRDAAGAAGRQRVLAEFDLRRMVESYEAVWRRISGERA" FT misc_feature complement(221771..222289) FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1" FT CDS complement(222841..223962) FT /transl_table=11 FT /locus_tag="BP3145" FT /product="putative glycosyltransferase" FT /note="Similar to Yersinia enterocolitica WbcM protein WbcM FT TR:Q56916 (EMBL:Z47767) (358 aa) fasta scores: E(): 8e-13, FT 26.31% id in 361 aa, and to Rhizobium meliloti putative FT glycosyltransferase protein Smb21250 TR:CAC49154 FT (EMBL:AL603644) (427 aa) fasta scores: E(): 4.1e-22, 37.05% FT id in 367 aa. Also similar to BP3147, 41.509% identity FT (42.897% ungapped) in 371 aa overlap." FT /db_xref="GOA:Q7VUF1" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7VUF1" FT /protein_id="CAE43412.1" FT /translation="MKILLLVSSMHAGGAERVAATLANGWAARGDQITLMPTYSSKGTC FT FYPLSDDVELLWLADRAGTRSGGVVAAWQRLRALRAVVRERAPDVVVSFLTNVNVAAIL FT ATRGLKTPLIVCERTNPVVDTSIGRIWRVLRRVLYPLADMVTVQADATVEPFARQVPGL FT KQLCVIPNPLPPELFDATPAAGSGAAPAARKRLMAMGRMVPDKRFDLLIDAYAGLADEF FT PDWDLWIWGEGPRRDDLQAQVAARGLATRIHMPGRTAAPWDELAKADAFVLSSAVEGFP FT NVLLEAMSLGLPCAAFDCPSGPAEMTRGGRDALLVPAGQRDALRDALGRLMRDPELRRD FT LGRRAAQSVRQRYALPAVLAQWDALFERVRGGA" FT misc_feature complement(222919..223428) FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1" FT CDS complement(223959..225884) FT /transl_table=11 FT /locus_tag="BP3146" FT /product="putative asparagine synthase" FT /note="Similar to Pseudomonas aeruginosa WbpS TR:Q9RHD2 FT (EMBL:AF035937) (627 aa) fasta scores: E(): 1.5e-123, FT 53.29% id in 638 aa, and to Rhizobium loti asparagine FT synthase MLR6755 TR:Q988G2 (EMBL:AP003010) (665 aa) fasta FT scores: E(): 3.9e-68, 46.56% id in 655 aa" FT /db_xref="GOA:Q7VUF0" FT /db_xref="HSSP:1GDO" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/TrEMBL:Q7VUF0" FT /protein_id="CAE43413.1" FT /translation="MCGIVGIWGPLRDKANVLAESCRRIRHRGPDSNGYWEDAEADLAL FT AHVRLAILDLTEAGHQPMVSACGRYVIVLNGEIYNHMELRERLQQDGLAPAWRGHSDTE FT TVLACFAGWGIEQTLQAAVGMFAIVLWDRAERKLALMRDRMGEKPLYYGYSQANLLFGS FT ELKAFMPVPGFGRELDRNALASFMRHNYIPAPQSIYAGIRKLPPGAWVEIDAAQMRRGE FT LPEPQVYWSARRAADQGLGDRRRFESDAQAIDALEQVVSQAVRGQMLSDVSLGAFLSGG FT IDSSTVVALMQAQSAQPVRTFAIGFHEKGYNEAEHAKAVAAHLGTEHTELYVTAEDGLA FT VVPSLADMYDEPFADSSQIPTSLVTRMARQHVTVALSGDGGDELFGGYSRYFRVDNWWR FT KCAAMPGPLRHLAGAALRGSAALPGAGAWRGKVGKLGELLGADTRGEFYRLFVSYWADP FT GRVVIGGTEPLSPFEQPMEGSTFDAMMKLDTVTYLPDDILVKVDRAAMAVSLETRVPLI FT DHRVYEFAWQLPFEYKVRGGTGKWLLRQLLYRHVPQAMVDRPKRGFAVPLAAWLRGPLR FT DWAEALLDPARLRQEGWFEPEPILRKWREHLSGHRNWDSHLWGVLMMQAWLDRYRAGAG FT DEAGRR" FT misc_feature complement(224133..224423) FT /note="HMMPfam hit to PF00733, Asparagine synthase" FT misc_feature complement(224712..225146) FT /note="HMMPfam hit to PF00733, Asparagine synthase" FT misc_feature complement(225426..225881) FT /note="HMMPfam hit to PF00310, Glutamine amidotransferases FT class-II" FT misc_feature complement(225867..225884) FT /note="ScanRegExp hit to PS00443, Glutamine FT amidotransferases class-II active site." FT CDS complement(225931..227067) FT /transl_table=11 FT /locus_tag="BP3147" FT /product="putative glycosyltranferase" FT /note="Similar to Rhizobium meliloti putative FT glycosyltransferase protein SMB21250 TR:CAC49154 FT (EMBL:AL603644) (427 aa) fasta scores: E(): 9.2e-37, 37.46% FT id in 371 aa, and to Streptomyces coelicolor putative FT transferase SC1c3.12 TR:O69854 (EMBL:AL023702) (697 aa) FT fasta scores: E(): 4.8e-19, 28.97% id in 390 aa, and to FT Yersinia enterocolitica TrsD TR:Q56916 (EMBL:Z47767) (358 FT aa) fasta scores: E(): 3.8e-18, 28.13% id in 359 aa. Also FT similar to BP3145, 41.509% identity (42.897% ungapped) in FT 371 aa overlap." FT /db_xref="GOA:Q7VUE9" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7VUE9" FT /protein_id="CAE43414.1" FT /translation="MSGPAERPLRVLIFIHSLHGGGAERVAADLSAHWARDGRAVMLVT FT QTDASGDVYPLHPQVLRRTLDTAGEGGGWRGVLANLRRIRALRALIKDFQPDIVLGMMT FT TASVLAVLAARGLGCRVVATEHTHPPSQALSGMWLRLRRWTYPRAARVVALTRGTADWL FT RTHVPGSRLAVIPNPVHWPLPRTEPVLVPPADGRPRLLAVGRLHPDKGFDVLIDAYARI FT APRYPDWDLVILGEGEECAALQRRVDEAGLAQRVALPGRAGNVGDWYACAALYVLTSRF FT EGLSNTLLESMASGLMPVSFDCDTGPREIVRPGVDGVLVRPAGDAGAMAQALAAAIDDE FT PGRRAMAARAIDVRERFSARHVLDLWQQLFDDALSQAK" FT misc_feature complement(226009..226518) FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1" FT CDS complement(227068..228438) FT /transl_table=11 FT /locus_tag="BP3148" FT /product="putative membrane protein" FT /note="Similar to Rhizobium loti virulence factor Mvin-like FT protein MLL5320 TR:Q98C28 (EMBL:AP003006) (526 aa) fasta FT scores: E(): 1.3e-13, 25.71% id in 420 aa, and to FT Streptomyces coelicolor putative integral membrane protein FT SCC61a.30 TR:Q9KYG3 (EMBL:AL356595) (523 aa) fasta scores: FT E(): 1.5e-11, 28.97% id in 421 aa" FT /db_xref="GOA:Q7VUE8" FT /db_xref="InterPro:IPR004268" FT /db_xref="UniProtKB/TrEMBL:Q7VUE8" FT /protein_id="CAE43415.1" FT /translation="MKAIRRKLDAIHPDHQRIFKGAFRVAVFLILGKAAGAIKEMAVAY FT RYGVSDAVDAYQFTMTMATWLPVTIVGALSVVLIPVLVRLRRAGGHERDRFVRELQGWS FT LAAGLTLALLTWMAWPHVLDWLGGGLSGTVDGMTHELLLAFAPVAALLLMAGISAARLR FT SHERHVNTLLDSVPAVTTLAWVMLAASADSVGPLLWGTLVGYAIQAAWLAWLAARADGG FT FWGWPAFTLRSPHWPELAAAAGVMLVGQVAMSFVGPLDQYAAANLGSNANATLGYASRL FT LSLVLGIGAVSVGRAALPVLADVQSRGDGARARAMALKWSALMVGAGAAAVVVGWLLAP FT WGVALLFERGAFTAENTQAVAQVLRWGLLQLPFYFGVLILVQLLASQNRYRIMALIAVA FT NFLLKAVLNTVLAPRMGTAGIMLATSLMYLLSFACYTVVALRPAPGADGGDDDREKR" FT misc_feature complement(join(227116..227181,227203..227268, FT 227284..227349,227407..227472,227533..227598, FT 227662..227727,227788..227853,227959..228024, FT 228070..228126,228190..228255,228325..228375)) FT /note="11 probable transmembrane helices predicted for FT BP3148 by TMHMM2.0 at aa 21-38, 61-83, 104-123, 138-160, FT 195-217, 237-259, 280-302, 322-344, 363-385, 390-412 and FT 419-441" FT CDS complement(228440..229465) FT /transl_table=11 FT /locus_tag="BP3149" FT /product="UDP-N-acetylglucosamine C4 epimerase" FT /note="Similar to Salmonella typhi vi polysaccharide FT biosynthesis protein VipB or TviC or Sty4660 SW:VIPB_SALTI FT (Q04973) (348 aa) fasta scores: E(): 2.8e-85, 63.17% id in FT 334 aa, and to Pseudomonas aeruginosa WbpP TR:Q9RHD6 FT (EMBL:AF035937) (341 aa) fasta scores: E(): 1e-96, 69.79% FT id in 341 aa" FT /db_xref="GOA:Q7TTK0" FT /db_xref="HSSP:1ORR" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7TTK0" FT /protein_id="CAE43416.1" FT /translation="MTNRFETTCAQLRAQPQKWLVTGCAGFIGSNLLETLLGLDQAVVG FT LDNFATGHQHNLDEVRAAVTPEQWARFTFIEGDIRDLAACQRAVQGVDRVLHQAALGSV FT PRSLKDPITTNEVNIGGFLNMLVAARDAQVQAFVYAASSSTYGDHPDLPKVEERIGNPL FT SPYAVTKYVNELYADVFARSYGFSSVGLRYFNVFGKRQDPDGAYAAVIPKWTAAMIKGE FT DVVINGDGQTSRDFCFVENAVQANLLAAMAAPEGANQVYNVAYNARTTLTELFEHLRRT FT LAGQGVSYEKAPVYAEFRAGDVRHSQADIGKAGKLLGYEPAYDILRGLEAAMPWYTQFL FT R" FT misc_feature complement(228446..229411) FT /note="HMMPfam hit to PF01370, NAD dependent FT epimerase/dehydratase family" FT CDS complement(229477..230751) FT /transl_table=11 FT /gene="wbpO" FT /locus_tag="BP3150" FT /product="polysaccharide biosynthesis protein" FT /note="Similar to Salmonella typhi Vi polysaccharide FT biosynthesis protein VipA or TviB or Sty4661 SW:VIPA_SALTI FT (Q04972) (425 aa) fasta scores: E(): 1.1e-118, 68.72% id in FT 422 aa, and to Pseudomonas aeruginosa WbpO TR:Q9RHD7 FT (EMBL:AF035937) (422 aa) fasta scores: E(): 3.6e-132, FT 80.09% id in 422 aa. Almost identical to BP1629, 99.762% FT identity in 420 aa overlap" FT /db_xref="GOA:Q7VUE7" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VUE7" FT /protein_id="CAE43417.1" FT /translation="MRIDDVKLAVVGLGYVGLPLAVEFGKKRPVIGFDINERRIAALKA FT GHDHTLEVEDDELARAAQLSYTAEREELGKANVFIVTVPTPIDEYKQPDLTPLVKASET FT IGAVLKRGDIVIYESTVYPGATEEDCVPVLERVSGLKFNQDFYAGYSPERINPGDKAHR FT VNTIKKVTSGSTPEVAELVDQLYNEIITAGTHKASSIRVAEAAKVIENTQRDVNIALIN FT ELALIFNKMGIDTEAVLQAAGTKWNFLPFRPGLVGGHCIGVDPYYLTHKAQAIGYHPEI FT ILAGRRLNDSMGGYVVSQLVKAMAKRRIHVEGARVLLMGLTFKENCPDLRNTRVVDIVR FT ELGEYHVDVDVYDPWVDPAEAEHEYGITPVAKPAAGAYDAIILAVSHHQFVEMGAEAIR FT KFGKAEHILYDLKYVLAPEQADLRL" FT misc_feature complement(229519..230736) FT /note="HMMPfam hit to PF00984, UDP-glucose/GDP-mannose FT dehydrogenase family" FT CDS complement(230857..231960) FT /transl_table=11 FT /locus_tag="BP3151" FT /product="probable glycosyltransferase" FT /note="Similar to Burkholderia pseudomallei undecaprenol FT phosphate N-acetylglucosaminyl transferase TR:O69131 FT (EMBL:AF064070) (368 aa) fasta scores: E(): 7.8e-51, 41.12% FT id in 355 aa, and to Pseudomonas aeruginosa FT glycosyltransferase wbpl wbpl or pa3145 TR:Q9HZ82 FT (EMBL:AE004738) (339 aa) fasta scores: E(): 3.5e-16, 29.05% FT id in 327 aa" FT /db_xref="GOA:Q7VUE6" FT /db_xref="InterPro:IPR018481" FT /db_xref="UniProtKB/TrEMBL:Q7VUE6" FT /protein_id="CAE43418.1" FT /translation="MTWLYICVVAFMVGGLIVASERWHGAFTGDSDLNKPQASHTRATP FT RVGGLAVLAGSLAGLLVLGPSNMTLTWLWPALFVAALPVFVAGLLEDITKDIGASKRLL FT AAFASAAIAWWLLGGVSRVGIAPVDWVLSFWPVSLIFTMFAVGGCTHALNIVDGMNGLA FT GMIATLMAVSISLVALQVGDMPIFMIAAALASATLGFLVWNFPFGRVFLGDGGAYFLGF FT MLAELAVLLVVRNPSVSPFYALAVLFYPVFETGFSIWRRRFKRGVPVDQPDALHLHQLV FT FRRLVRVTFSRGRRHAVPALCNALASPYMWVLALIGLVPATIWWDNAWFLCASLVVFAA FT VYTWLYMRLVSWRRPGWLLLPSVIRTH" FT misc_feature complement(join(230926..230991,231004..231069, FT 231184..231249,231262..231315,231337..231402, FT 231415..231480,231502..231567,231586..231651, FT 231691..231756,231769..231819,231883..231948)) FT /note="11 probable transmembrane helices predicted for FT BP3151 by TMHMM2.0 at aa 4-26, 47-64, 68-90, 103-125, FT 131-153, 160-182, 186-208, 215-233, 237-259, 297-319 and FT 323-345" FT misc_feature complement(231250..231744) FT /note="HMMPfam hit to PF00953, Glycosyl transferase" FT CDS complement(232689..233357) FT /transl_table=11 FT /locus_tag="BP3152" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PA0655 TR:Q9I5R6 (EMBL:AE004500) (215 aa) fasta FT scores: E(): 8e-35, 49.28% id in 211 aa" FT /db_xref="GOA:Q7VUE5" FT /db_xref="InterPro:IPR011566" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUE5" FT /protein_id="CAE43419.1" FT /translation="MSTSSSASALGRRAGPLDGLIGEIDRALRVLSGAATAARPYPAQA FT PEAPDALSEREKRHAAGLMRVNHVGEVCAQALYRGQAAACREPAARALLREAAAEEVDH FT LAWCHERLRELGSRPSLLNPFWYTGSFALGVLASYAGVPRNLGFMAETERQVEAHLDGH FT LRTLPVQDQRSRDIVQKMKEDEAQHRASAERAGGVPLPAPVRGAMRAMSKVMTSTAYWL FT " FT CDS 233481..233918 FT /transl_table=11 FT /locus_tag="BP3153" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PAa0653 TR:O05133 (EMBL:U89892) (140 aa) fasta FT scores: E(): 6.9e-25, 53.57% id in 140 aa" FT /db_xref="GOA:Q7VUE4" FT /db_xref="InterPro:IPR003718" FT /db_xref="UniProtKB/TrEMBL:Q7VUE4" FT /protein_id="CAE43420.1" FT /translation="MQMECTIDWGGPAGMLFTASTGSGHVAVMDGAVDGGGHDLAPRPM FT EMLLAGTGGCTAYDVVLILKRGRHAVTGCSVKLQAERADADPKVFTRIHFAFTVTGSKL FT PRAAVERAVQLSHEKYCSASAMLEKTAELSFSVDIVDTQAA" FT CDS 233971..234942 FT /transl_table=11 FT /locus_tag="BP3154" FT /product="putative thymidylate synthase" FT /note="Similar to Lactobacillus casei thymidylate synthase FT ThyA SW:TYSY_LACCA (P00469) (316 aa) fasta scores: E(): FT 2.9e-30, 35.06% id in 328 aa, and to Oryza sativa FT thymidylate synthase thyA TR:Q9ZWF1 (EMBL:AB023402) (322 FT aa) fasta scores: E(): 2.7e-27, 33.62% id in 339 aa" FT /db_xref="GOA:Q7VUE3" FT /db_xref="HSSP:1HW4" FT /db_xref="InterPro:IPR000398" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUE3" FT /protein_id="CAE43421.1" FT /translation="MKQYLDLVQSILDQGAWQENRTGVRTLSLPGAALRFDLQQGFPAV FT TTKKLAFKSAIGEMVGFLRATRSAAQFRALGCKVWDQNANENEQWLANPYREGPDDLGP FT VYGVQWRHWPAYKLLPSSAGGQVADALARGYRQVAEVDENGAPHVLLYKAVDQLRQCLD FT TIRQSPGDRRILFHGWNWAQIEEMALPPCHLLYQFLPNAGTREISLCLYIRSNDVGLGT FT PFNLTEGAALLHLVGRLTGYKPRWFSYFIGDAHVYENHLPMLREQLAREPYPAPQLVLS FT DRIPDFAVTGKYEPQWLEQVEPGDFTLSGYQHHAPLTAPMAV" FT misc_feature 233971..234321 FT /note="HMMPfam hit to PF00303, Thymidylate synthase" FT misc_feature 234433..234939 FT /note="HMMPfam hit to PF00303, Thymidylate synthase" FT CDS 234967..235470 FT /transl_table=11 FT /gene="folA" FT /gene_synonym="tmrA" FT /locus_tag="BP3155" FT /product="dihydrofolate reductase" FT /EC_number="1.5.1.3" FT /note="Similar to Escherichia coli dihydrofolate reductase FT FolA or TmrA or B0048 SW:DYR_ECOLI (P00379) (159 aa) fasta FT scores: E(): 1.9e-23, 46.54% id in 159 aa, and to FT Salmonella typhimurium dihydrofolate reductase type III FT DhfrIII SW:DYR3_SALTY (P12833) (162 aa) fasta scores: E(): FT 3.6e-25, 47.17% id in 159 aa" FT /db_xref="GOA:Q7VUE2" FT /db_xref="HSSP:1DHI" FT /db_xref="InterPro:IPR001796" FT /db_xref="UniProtKB/TrEMBL:Q7VUE2" FT /protein_id="CAE43422.1" FT /translation="MPMSATPLLSLVVAYSTNRVIGRDNALPWKLPGDLAHFKRTTLGH FT PIIMGRNTWESLGRPLPGRTNIVITRNPAYDAAGAVVVGSLAAAIQACGDAAVACVIGG FT AQIYAQALPLAQRVVATEVHAEIEGDAFFPPLPAGQWRETQRAAQPAENGLRYDFVEYE FT RVAG" FT misc_feature 234994..235368 FT /note="HMMPfam hit to PF00186, Dihydrofolate reductase" FT misc_feature 235024..235092 FT /note="ScanRegExp hit to PS00075, Dihydrofolate reductase FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(235434..236891) FT /transl_table=11 FT /locus_tag="BP3156" FT /product="probable GntR-family transcriptional regulator" FT /note="Similar to Rhizobium meliloti putative FT transcriptional regulator protein SMBb20039 TR:CAC48442 FT (EMBL:AL603642) (474 aa) fasta scores: E(): 2.6e-54, 39.15% FT id in 475 aa, and to Pseudomonas aeruginosa probable FT transcriptional regulator PA5283 TR:Q9HTS1 (EMBL:AE004941) FT (458 aa) fasta scores: E(): 3.4e-52, 37.77% id in 458 aa" FT /db_xref="GOA:Q7VUE1" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VUE1" FT /protein_id="CAE43423.1" FT /translation="MIDFQPVRGRAQAPSLVEQVVQAFSSAIARQVLRPGMPVPSVREF FT ARQHGISTFTVASAYSRLAAQGWLVARPGSGYRAASPQAAAPRAGTPGQWSPPRLNDSW FT LLSDIYADHSIPIKSGCGWLPPEWLHEEGLHQALRHLGRVPALRIAGYGHPYGYAPLRE FT TIAAGLGAAGMPAEADQVLLTQGVTHGLDLVMRTLLRPGDTVLVEQPCYANLLQLLRLV FT GMRVVSVPRGVDGIDCEALDAAALAHRPRALFVNTVLQNPSGASLGMANAFRVLQAAER FT HGLWIVEDDISRELMPAIAPLLAALDGAQRVVYLSGYSKAISPSVRVGYIVAHRDLVRD FT LARTKMAAGLTSPEIMERVVHQVIREGRYRAHVLRTRERLGQAHAQVVQAMDEHGLQLC FT ARPQAGLFLWARPGGAWRERGANALAELALKDGIWLAPGSYFDAADADIPWLRFNVAYS FT DAAALWRFLRGAGASAQPATRSYSTKS" FT misc_feature complement(236664..236834) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT CDS 237074..238399 FT /transl_table=11 FT /locus_tag="BP3157" FT /product="omega-amino acid--pyruvate aminotransferase" FT /EC_number="2.6.1.18" FT /note="Similar to Pseudomonas putida omega-amino FT acid--pyruvate aminotransferase SW:OAPT_PSEPU (P28269) (449 FT aa) fasta scores: E(): 3.2e-75, 47.38% id in 439 aa, and to FT Rhizobium loti beta-alanine-pyruvate transaminase Mll1632 FT TR:Q98K53 (EMBL:AP002997) (442 aa) fasta scores: E(): FT 1.2e-108, 63.67% id in 435 aa" FT /db_xref="GOA:Q7VUE0" FT /db_xref="HSSP:1DTY" FT /db_xref="InterPro:IPR015421" FT /db_xref="UniProtKB/TrEMBL:Q7VUE0" FT /protein_id="CAE43424.1" FT /translation="MNAPASPPDLSHLWMPFTANRQFKSQPRLLARAEGMYYTSTDGRQ FT ILDGTAGLWCVNAGHCRPEIVQAIASQAGEMDYAPGFQLGHPLAFEAATAVASFMPAGI FT DRVFFTNSGSESVDTALKIALAYHRARGDAQRTRLVGRERGYHGVGFGGISVGGISANL FT KTFSGALLPAVDHLPHTHSLKHNAFSKGQPAWGEHLADELERIVALHDASTIAAVIVEP FT MAGSTGVLVPPKGYLQRLREITARHGILLIFDEVITAYGRLGSPTAAEHFGVTPDIITM FT AKGVSNAAVPAGAVAVKREVHDAIVNGVQGGIEFFHGYTYSAHPLAAAAILATLGIYRR FT DDLFGRARDLSPAFEKAAHALQGAPHVIDVRNIGLVAGIELASRPDAPGARAAEAFRKC FT FDSGLMVRYTGDILAVSPPLIIDEAQIGELFEGIGKVLKEIA" FT misc_feature 237176..238330 FT /note="HMMPfam hit to PF00202, Aminotransferase class-III" FT misc_feature 237911..237940 FT /note="ScanRegExp hit to PS00599, Aminotransferases FT class-II pyridoxal-phosphate attachment site." FT CDS join(238431..238583,238582..239889) FT /pseudo FT /transl_table=11 FT /gene="mmsA" FT /locus_tag="BP3158" FT /product="putative methylmalonate-semialdehyde FT dehydrogenase [acylating] (Pseudogene)" FT /EC_number="1.2.1.27" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 51. The sequence has been checked FT and believed to be correct. Similar to Pseudomonas FT aeruginosa methylmalonate-semialdehyde dehydrogenase FT [acylating] MmsA or Pa3570 SW:MMSA_PSEAE (P28810) (496 aa) FT fasta scores: E(): 1.5e-86, 49.59% id in 498 aa, and to FT Rhizobium leguminosarum malonic semialdehyde oxidative FT decarboxylase IolA TR:Q9L3H7 (EMBL:AJ276297) (498 aa) fasta FT scores: E(): 7.3e-103, 55.82% id in 498 aa" FT /db_xref="PSEUDO:CAE43425.1" FT misc_feature join(238461..238583,238576..239838) FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family" FT variation 238583 FT /note="~26 bp deletion in pertussis relative to FT parapertussis and bronchiseptica" FT misc_feature 239215..239250 FT /note="ScanRegExp hit to PS00070, Aldehyde dehydrogenases FT cysteine active site." FT CDS 240177..241742 FT /transl_table=11 FT /locus_tag="BP3159" FT /product="putative extracellular solute-binding protein" FT /note="Similar to Rhizobium sp probable peptide ABC FT transporter periplasmic binding protein Y4tO precursor FT SW:Y4TO_RHISN (P55669) (531 aa) fasta scores: E(): 2.9e-69, FT 40.76% id in 520 aa" FT /db_xref="GOA:Q7VUD9" FT /db_xref="InterPro:IPR000914" FT /db_xref="UniProtKB/TrEMBL:Q7VUD9" FT /protein_id="CAE43426.1" FT /translation="MLKSVRIAALAGAMLLAAQGAGAETVIKAVMHSPLRLTDPHATTA FT YITTWHGYMIYDTLLATDADNKIQPQMLEKWEVSPDGKTYTMTLRPGQKWHDGKPVTAE FT DCVASIKRWAGGDGMGRTLMKFTDRIEAVDDQTLRIVMKEPTDLALRALSKPTGTAAFM FT MPKRIADIPIGQPITDMTGSGPFKVAEFKPGVKTVYVKNADYVPRQEPASGLAGGKAVH FT IDRVEWNVMPDALTTANALLGGKIDFVEQFPYDLLPMVEGNPELKEEALSPVGYFTMYR FT FNFKYPPFDNKKIRQAAMYAIGQEDVMKALVGNPKYWQTCASLWGCGTPFETDIGKDMV FT VPSNIEKARALLKEAGYDNTPILVMHATDVGTLSAQPVVMAQALRKAGFNVNLAAMDWQ FT SVATRRASKAAPAQGGWNIHNTNWYATDIMDPVRSAPAAANGDNAWFGWPDIPEIEALR FT TRFALSSDPAEQKKLAEEAQRIGIDEGLYVPLGQMSVPTVYTTKLSGLVHAPVFAFWNV FT KKAP" FT misc_feature 240177..240245 FT /note="Signal peptide predicted for BP3159 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.917 between residues 23 and 24" FT misc_feature 240336..240614 FT /note="HMMPfam hit to PF00496, Bacterial extracellular FT solute-binding proteins, family 5" FT misc_feature 240837..241106 FT /note="HMMPfam hit to PF00496, Bacterial extracellular FT solute-binding proteins, family 5" FT CDS 241788..242729 FT /transl_table=11 FT /locus_tag="BP3160" FT /product="putative ABC transporter permease protein" FT /note="Similar to Rhizobium sp probable peptide ABC FT transporter permease protein Y4tP SW:Y4TP_RHISN (Q53191) FT (313 aa) fasta scores: E(): 4e-60, 52.07% id in 313 aa" FT /db_xref="GOA:Q7VUD8" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7VUD8" FT /protein_id="CAE43427.1" FT /translation="MLVFIARRLLATIPVLIMVAVVVFAILRASPGDPAIIMAGDAATP FT ERIAQIRQVMGLDQPLVKQFFIWTGRLVRGDMGTSLMSGVPVTQLIGQRLEPSLSLAMI FT TLVFTLAVAIPLGILAAWRRGRLLDRAVMGFSVLGFSVPVFVTSYVLIWAFAIKLGWFN FT VQGYTPLAQGFWPYLHRLVLPSLALSTVYVALIARITRTSIIEVMGEDFIRTARAKGLG FT ETGVLLGHALRNAAVPIATVIGVGVALLISGVVVTESVFNIPGLGRLVVEAVMARDYPV FT IQGLTLFFAFVYVFINLVVDCAYTVFDPRIRY" FT misc_feature join(241812..241880,242085..242153,242190..242258, FT 242316..242384,242490..242558,242640..242708) FT /note="6 probable transmembrane helices predicted for FT BP3160 by TMHMM2.0 at aa 9-31, 100-122, 135-157, 177-199, FT 235-257 and 285-307" FT misc_feature 241857..241916 FT /note="ScanRegExp hit to PS00187, Thiamine pyrophosphate FT enzymes signature." FT misc_feature 242397..242612 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature 242400..242486 FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign. Confirmed by FT InterPro eMOTIF pattern match." FT CDS 242732..243619 FT /transl_table=11 FT /locus_tag="BP3161" FT /product="putative peptide ABC transporter permease FT protein" FT /note="Similar to Rhizobium sp probable peptide ABC FT transporter permease protein Y4tQ SW:Y4TQ_RHISN (Q53192) FT (291 aa) fasta scores: E(): 3.3e-44, 49.47% id in 283 aa, FT and to Bacillus firmus dipeptide transport system permease FT protein DppC SW:DPPC_BACFI (P94312) (304 aa) fasta scores: FT E(): 6.6e-33, 38.02% id in 284 aa" FT /db_xref="GOA:Q7VUD7" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7VUD7" FT /protein_id="CAE43428.1" FT /translation="MPTHSDAVADGALPENGPPQAGAWRRVRREFSGAPVLAALAVLAL FT VVGAALLAPWLGTVDPTAIDPGARLKPPFGDYLFGTDAFGRDIWSRVVYGARVSLVAGL FT GAALVSVTLGLVIGVIAGWFRTLDGLIIRTMDAVMAIPGILLAIALVSVTGASLATVLV FT AITIPEIPRVVRLVRGQILSVRGEPYVEAALALGTPLPLLLWRHLVPSTVAPLTVQGTY FT VFASAMLTEAILSFLGAGIPPEIASWGNIMSEGRMYFRMLPGLILFPGLFLSLTVLSVN FT ILGDALDPKMTRRT" FT misc_feature join(242831..242899,243035..243103,243164..243232, FT 243290..243358,243395..243454,243512..243580) FT /note="6 probable transmembrane helices predicted for FT BP3161 by TMHMM2.0 at aa 34-56, 102-124, 145-167, 187-209, FT 222-241 and 261-283" FT misc_feature 243272..243502 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature 243275..243361 FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign. Confirmed by FT InterPro eMOTIF pattern match." FT CDS join(243623..244843,244837..245163) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3162" FT /product="putative ABC transpoter ATP-binding protein FT (pseudogene)" FT /note="Pseudogene. This CDS appears to contain a deletion FT that has lead to a shift in reading frame following codon FT 407. The sequence has been checked and believed to be FT correct. Similar to Rhizobium meliloti putative FT oligopeptide uptake ABC transporter ATP-binding protein, FT consisting of 2 fused ATP-binding domains TR:CAC49264 FT (EMBL:AL603645) (533 aa) fasta scores: E(): 2.1e-52, 42.26% FT id in 530 aa, and to Vibrio cholerae ABC transporter, FT ATP-binding protein vca0977 TR:Q9KKX3 (EMBL:AE004424) (539 FT aa) fasta scores: E(): 2.7e-52, 42.26% id in 530 aa" FT /db_xref="PSEUDO:CAE43429.1" FT misc_feature 243752..244348 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 243773..243796 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 244118..244162 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 244604..244627 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT variation 244841..244843 FT /note="large deletion following this codon relative to FT parapertussis and bronchiseptica" FT CDS 245207..246682 FT /transl_table=11 FT /locus_tag="BP3163" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti MLR6294 protein TR:Q989S9 FT (EMBL:AP003008) (525 aa) fasta scores: E(): 1.1e-43, 33.66% FT id in 499 aa" FT /db_xref="InterPro:IPR019825" FT /db_xref="UniProtKB/TrEMBL:Q7VUD6" FT /protein_id="CAE43430.1" FT /translation="MRWLLAMIKHETNTFSPVPTPLERFFRGSPEILAGERAIRAYENT FT DSGLGGYIEVARREGAEIVVPVAAESWPSAPTDRATYERLCGLVLDEARRGGFDVILLD FT LHGAMVAEGVEDAEGDLLRRLRDIAPAIPVGVTLDMHANIYDDIVRHATVISGFHTYPH FT VDIRAAGLRAANAIARTLRGEIKPVMSWANKPMLPHIMRQGTHAEPNKSLQARCKALES FT EGVIAASVFVGFPHADIREAGLSAVVCTDANLAQAEQYRDELLETAWRGRADWVFHAEP FT LAPTIARAKAIENGPVVLLDHYDNTGSGGTMDTTAVLAEILDQGLENVAFYAICDPQAA FT QQAAAAGVGATVTLPLGGKVAMPALRQASPLLHLTARVKLLFDGVYLNRGPMYRGVRND FT TGLTVVLDTGKVEIVVVSRHQEPFDINCLLSAGIDPLQKRYVALKSRVHWRAGFADMAA FT HVIECTGVGVTTSDYGQVEFRHVRRPVYPLDAI" FT misc_feature 246410..246430 FT /note="ScanRegExp hit to PS00307, Legume lectins beta-chain FT signature." FT repeat_region 246679..246710 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 246679..247731 FT CDS 246781..247731 FT /transl_table=11 FT /locus_tag="BP3164" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TT97" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TT97" FT /protein_id="CAE43431.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHT" FT misc_feature 247162..247695 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(247704..247731) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(247711..247842) FT /pseudo FT /transl_table=11 FT /locus_tag="BP3165" FT /product="N-terminal region of a putative aldehyde FT dehydrogenase (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to the N-terminal region of FT Rhizobium loti aldehyde dehydrogenase MLR6098 TR:Q98A95 FT (EMBL:AP003008) (481 aa) fasta scores: E(): 1.4, 37.83% id FT in 37 aa, and to Spinacia oleracea betaine-aldehyde FT dehydrogenase, chloroplast precursor SW:DHAB_SPIOL (P17202) FT (497 aa) fasta scores: E(): 4.6, 39.39% id in 33 aa" FT /db_xref="PSEUDO:CAE43432.1" FT CDS complement(248136..248780) FT /transl_table=11 FT /gene="ureG" FT /locus_tag="BP3166" FT /product="urease accessory protein" FT /note="Identical to Bordetella bronchiseptica urease FT accessory protein UreG SW:UREG_BORBR (O06709) (214 aa) FT fasta scores: E(): 1e-74, 99.53% id in 214 aa, and similar FT to Escherichia coli urease accessory protein UreG FT SW:UREG_ECOLI (Q03287) (205 aa) fasta scores: E(): 1.4e-44, FT 65.98% id in 197 aa" FT /db_xref="GOA:Q7VUD5" FT /db_xref="InterPro:IPR004400" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUD5" FT /protein_id="CAE43433.1" FT /translation="MHDISSLTTRTKALPPLRVGVGGPVGSGKTTLLEMVCKAMYPQFD FT LIAITNDIYTKEDQRLLTLSGALPPERILGVETGGCPHTAIREDASINLIAIDQMLEQF FT PDADIVFVESGGDNLAATFSPELSDLTLYIIDVASGEKIPRKGGPGITKSDLFIINKTD FT LAPYVGADLAVMEADTRRMRGDKPFVMCNLKTGDGLDQVIAFLKTEGLFRG" FT misc_feature complement(248352..248735) FT /note="HMMPfam hit to PF01495, HypB/UreG nucleotide-binding FT domain" FT misc_feature complement(248691..248714) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(join(248805..249416,249420..249494)) FT /pseudo FT /transl_table=11 FT /gene="ureF" FT /locus_tag="BP3167" FT /product="urease accessory protein (Pseudogene)" FT /note="Pseudogene. This CDS contains an in-frame TAG stop FT codon. The sequence has been checked and believed to be FT correct. Similar to Alcaligenes eutrophus urease accessory FT protein UreF TR:O30339 (EMBL:Y13732) (230 aa) fasta scores: FT E(): 1.2e-46, 57.33% id in 225 aa, and to Vibrio FT parahaemolyticus UreF TR:Q9FAS3 (EMBL:AB038238) (221 aa) FT fasta scores: E(): 5.5e-22, 39.18% id in 222 aa" FT misc_feature complement(248937..249389) FT /note="HMMPfam hit to PF01730, UreF" FT variation complement(249417..249419) FT /note="In-frame TAG stop codon in pertussis; CAG in FT parapertussis and bronchiseptica" FT CDS complement(249490..>250104) FT /transl_table=11 FT /gene="ureE" FT /locus_tag="BP3167A" FT /product="urease accessory protein" FT /note="Similar to Alcaligenes eutrophus urease accessory FT protein UreE SW:UREE_ALCEU (O30338) (192 aa) fasta scores: FT E(): 3.5e-29, 53.37% id in 178 aa, and to Klebsiella FT aerogenes urease accessory protein UreE SW:UREE_KLEAE FT (P18317) (158 aa) fasta scores: E(): 3.9e-14, 44.02% id in FT 159 aa" FT /db_xref="GOA:Q7VUD4" FT /db_xref="HSSP:1GMU" FT /db_xref="InterPro:IPR004029" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUD4" FT /protein_id="CAE43435.1" FT /translation="KIANTFIKRGAAGGLDLSQAPGVTLTLAERRRSRQRLDLDEGRGE FT LGMAIERGQTLRDGDVLVAEDGTYVVVRAALEDVARVTAATPWQLARAAYHLGNRHVLL FT EIAERHLQFEYDAVLIDMLAQLGGVTATRLRAVFEPDVGAYGGGHRHGHDESFGDDYAL FT AQAAYHAHEAHPHAHFHAGGHGHVHSGHGHGGKHGEHDAES" FT CDS complement(250110..251825) FT /transl_table=11 FT /gene="ureC" FT /locus_tag="BP3168" FT /product="urease alpha subunit" FT /EC_number="3.5.1.5" FT /note="Similar to Bordetella bronchiseptica urease alpha FT subunit UreC SW:URE1_BORBR (O08400) (571 aa) fasta scores: FT E(): 3.9e-217, 99.82% id in 571 aa" FT /db_xref="GOA:Q7VUD3" FT /db_xref="HSSP:1EJX" FT /db_xref="InterPro:IPR017950" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUD3" FT /protein_id="CAE43436.1" FT /translation="MTRISRSAYAEIYGPTVVGGVGDRVRLADTLLLAEVEKDHTIFGE FT EVKFGGGKVIRDGMGQSQRLATDCVDTVITNALIIDAVTGIVKADIGIKDGLISGIGKA FT GNPDTQPGVTIIIGASTEVVAGEGLIVTAGAIDTHIHFICPQQIEEALATGTTTMIGGG FT TGPATGSLATTSTSGPWHMAAMLQALDAFPVNVGLFGKGSSSSHGALLEQVRAGAMGLK FT IHEDWASTPASIDTCLNVAEETDIQVAIHSDTLNESGFVEDTFAAFKGRTIHSFHTEGA FT GGGHAPDIIRAAGMPNVLPASTNPTMPFTRNTIDEHLDMVMVCHHLDPSIAEDLAFAES FT RIRRETIAAEDILHDLGAFSIMSSDSQAMGRVGEIVLRTWQTAHKMKLQRGPLQGDSER FT SDNERIKRYIAKYTINPAVAHGIAHLVGSVEVGKLADLVLWKPAFFGVKVNMVLKSGMA FT VSASIGDMGASISTPQPVQIRPMWGSHGKALRTSVAFVSQVSLSNPAVSELGLNKRLEA FT VRGCRGVTKHDMVRNNWLPAISVDPQTYQVYADGQLLRCEALAELPMAQRYFLF" FT misc_feature complement(250113..251825) FT /note="HMMPfam hit to PF00449, Urease alpha-subunit, FT N-terminal domain" FT misc_feature complement(250812..250862) FT /note="ScanRegExp hit to PS00145, Urease active site. FT Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(251391..251432) FT /note="ScanRegExp hit to PS01120, Urease nickel ligands FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(251822..252130) FT /transl_table=11 FT /gene="ureB" FT /locus_tag="BP3169" FT /product="urease beta subunit" FT /EC_number="3.5.1.5" FT /note="Similar to Bordetella bronchiseptica urease beta FT subunit UreB SW:URE2_BORBR (O06707) (102 aa) fasta scores: FT E(): 4.1e-39, 99.02% id in 102 aa" FT /db_xref="GOA:Q7VUD2" FT /db_xref="HSSP:1EJX" FT /db_xref="InterPro:IPR002019" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUD2" FT /protein_id="CAE43437.1" FT /translation="MIPGEILTEPGQIELNVGRPTLTIAVVNEDDRPIQVGSHYHFAEA FT NNALVFDRELATGYRLNIPAGNAVRFEPGMRRTVELVAVGGERRIFGFQGKVMGALK" FT misc_feature complement(251876..252085) FT /note="HMMPfam hit to PF00699, Urease beta subunit." FT CDS complement(252147..252755) FT /transl_table=11 FT /gene="ureJ" FT /locus_tag="BP3170" FT /product="urease accessory protein" FT /note="Similar to Bordetella bronchiseptica urease FT accessory protein UreJ TR:O06706 (EMBL:AF000579) (202 aa) FT fasta scores: E(): 7.6e-73, 99.5% id in 202 aa, and to FT Rhizobium leguminosarum HupE protein precursor FT SW:HUPE_RHILV (P27650) (191 aa) fasta scores: E(): 6.2e-18, FT 38.69% id in 199 aa" FT /db_xref="InterPro:IPR007038" FT /db_xref="UniProtKB/TrEMBL:Q7VUD1" FT /protein_id="CAE43438.1" FT /translation="MSKRAMLGSGAAALMLFSGAALAHPGHLGHELPGSMFAAGFWHPL FT TGFDHLLAMLAVGMWSALTHHTARQAVWLPVMFLALLFAGAMMGMAGVRLPAVEPVIMV FT SLLVLGLLVASRKAVQGWAGFALVGGFALFHGLAHGMELPGSEGALGFVAGFMLATLGL FT HLAGLFAGFRLKHWNLWLSRALGVGIAGYGALLFVGARV" FT misc_feature complement(join(252153..252218,252240..252305, FT 252336..252392,252414..252464,252480..252545, FT 252567..252632,252678..252743)) FT /note="7 probable transmembrane helices predicted for FT BP3170 by TMHMM2.0 at aa 13-35, 50-72, 79-101, 106-123, FT 130-149, 159-181 and 188-210" FT misc_feature complement(252687..252755) FT /note="Signal peptide predicted for BP3170 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 32 and 33" FT CDS complement(252809..253111) FT /transl_table=11 FT /gene="ureA" FT /locus_tag="BP3171" FT /product="urease gamma subunit" FT /EC_number="3.5.1.5" FT /note="Similar to Bordetella bronchiseptica urease gamma FT subunit UreA SW:URE3_BORBR (O06705) (100 aa) fasta scores: FT E(): 2e-34, 99% id in 100 aa, and to Escherichia coli FT urease gamma subunit UreA SW:URE3_ECOLI (Q03282) (100 aa) FT fasta scores: E(): 8.9e-27, 75% id in 100 aa" FT /db_xref="GOA:Q7VUD0" FT /db_xref="InterPro:IPR002026" FT /db_xref="UniProtKB/Swiss-Prot:Q7VUD0" FT /protein_id="CAE43439.1" FT /translation="MELTPREKDKLLIFTAALLAERRRARGLKLNYPETVALITAALME FT GARDGKTVAELMSEGTRILGRDEIMEGVPEMISNIQVEVTFPDGTKLITVHNPVV" FT misc_feature complement(252815..253111) FT /note="HMMPfam hit to PF00547, Urease, gamma subunit" FT CDS complement(253212..254066) FT /transl_table=11 FT /gene="ureD" FT /locus_tag="BP3172" FT /product="urease accessory protein" FT /note="Identical to Bordetella bronchiseptica urease FT accessory protein UreD SW:URED_BORBR (O06704) (284 aa) FT fasta scores: E(): 3.6e-121, 100% id in 284 aa, and similar FT to Escherichia coli urease accessory protein UreD FT SW:URED_ECOLI (Q03285) (278 aa) fasta scores: E(): 1.5e-24, FT 33.68% id in 282 aa" FT /db_xref="GOA:P0A4R4" FT /db_xref="InterPro:IPR002669" FT /db_xref="UniProtKB/Swiss-Prot:P0A4R4" FT /protein_id="CAE43440.1" FT /translation="MSETLDQWRAGLTLGFAPGHAGRTVLRERAHYGPMLVQRALYPEG FT PQVCHVAILHPPSGIAGGDALEIRVDVAGGARAALTTPGATRWYKSNGRQASQDVHLRV FT AAGGRLDWLPLESIFFEEADALARNRIQLESGAAAIGWDLIQLGRVNQSGHWSQGRLHT FT ATELYVDGRLLWVDQGLVGAQDDVRRQVSGLAGFPVHAALWSFGPRLDAEQNEELAGLM FT PWSDTLRGAATTMPYDATQSLCLVRCLGVHMEDVRAVMTDAWAYLRPRVLDTPAVVPRL FT WAT" FT misc_feature complement(253287..253919) FT /note="HMMPfam hit to PF01774, UreD urease accessory FT protein" FT CDS 254648..254920 FT /transl_table=11 FT /gene="hmrR" FT /locus_tag="BP3173" FT /product="heavy metal dependent transcription regulator FT (partial)" FT /note="Similar to the N-terminal region of Rhizobium FT meliloti heavy metal dependent transcription regulator HmrR FT SW:HMRR_RHIME (Q9X5X4) (147 aa) fasta scores: E(): 2e-15, FT 61.9% id in 84 aa, and to Escherichia coli transcriptional FT regulator CueR or B0487 SW:CUER_ECOLI (P77565) (135 aa) FT fasta scores: E(): 9.5e-08, 37.5% id in 88 aa. Also similar FT to BP1726, 58.333% identity in 84 aa overlap." FT /db_xref="GOA:Q7VUC9" FT /db_xref="HSSP:1Q06" FT /db_xref="InterPro:IPR015358" FT /db_xref="UniProtKB/TrEMBL:Q7VUC9" FT /protein_id="CAE43441.1" FT /translation="MNIGEASKASKVSAKMIRCCEQIGLIAAAQRTASDHRAYGHADMH FT QLHFIRRTRDLGCSVAESGDLLNPWNPQSRQSADVKRLAKRTLSY" FT misc_feature 254657..254764 FT /note="HMMPfam hit to PF00376, Bacterial regulatory FT proteins, merR family" FT CDS join(254937..255152,255154..255276) FT /pseudo FT /transl_table=11 FT /gene="fdx" FT /locus_tag="BP3174" FT /product="[2Fe-2S] ferredoxin (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 615. The frameshift occurs within FT a tract of (T)2. The sequence has been checked and believed FT to be correct. Similar to Escherichia coli ferredoxin, FT 2Fe-2S Fdx or B2525 or Z3792 or Ecs3391 TR:AAG57639 FT (EMBL:M88654) (111 aa) fasta scores: E(): 1.4e-31, 70.9% id FT in 110 aa. Also similar to BP1804, 63.964% identity FT (64.545% ungapped) in 111 aa overlap." FT /db_xref="PSEUDO:CAE43442.1" FT misc_feature join(254958..255152,255154..255216) FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain" FT misc_feature 255060..255092 FT /note="ScanRegExp hit to PS00814, Adrenodoxin family, FT iron-sulfur binding region signature. Confirmed by InterPro FT eMOTIF pattern match." FT variation 255151..255152 FT /note="(T)2 in pertussis; (T)1 in parapertussis" FT CDS complement(255338..255745) FT /transl_table=11 FT /locus_tag="BP3175" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti MLL4859 protein TR:Q98D49 FT (EMBL:AP003005) (134 aa) fasta scores: E(): 8.4e-23, 46.34% FT id in 123 aa" FT /db_xref="GOA:Q7VUC8" FT /db_xref="InterPro:IPR006913" FT /db_xref="UniProtKB/TrEMBL:Q7VUC8" FT /protein_id="CAE43443.1" FT /translation="MKVEGRCHCGAIAYEAEVEPGTITVCHCADCQMQSGSVFRANISA FT PADTFVLLQGTPKEYLKIAASGARRMHAFCGNCGGPIYSCAAENPQSYSLRVGALEQRH FT ALGRPLRQIWARRRFSWLSSLGDVEEFDGQP" FT tRNA complement(255918..256008) FT /note="tRNA Ser anticodon GGA, Cove score 75.09" FT CDS complement(256115..256909) FT /transl_table=11 FT /locus_tag="BP3176" FT /product="probable GntR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator PA2299 TR:Q9I1H6 (EMBL:AE004655) FT (249 aa) fasta scores: E(): 1.6e-16, 33.04% id in 227 aa" FT /db_xref="GOA:Q7VUC7" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VUC7" FT /protein_id="CAE43444.1" FT /translation="MQHASSAGRRPAVPVYLKIRNAIRDAISNAAYAPGDLLPSETELA FT KRYATTRATVVHAIQQLVFEGLVERKRGVGSFVAQPKLSSTVDTHRVAYFEQDAFARDL FT TYEVIGYGKAVVEDHVRDTLRLGRGEPVYRLQRLCLLSGKPIAFELRYLPALVGARLTA FT EMLARRSVQSLLDEEVGMPITRFLNAVRVALVPAAVARHLQLEKGRPVMVRTHTFLDAA FT DTPLLWGETLYREEYQINYVLTAMQAPDEAVGGRPRKGAGRA" FT misc_feature complement(256676..256855) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT misc_feature complement(256724..256798) FT /note="ScanRegExp hit to PS00043, Bacterial regulatory FT proteins, gntR family signature." FT CDS 257010..258245 FT /transl_table=11 FT /locus_tag="BP3177" FT /product="putative methylaspartate ammonia-lyase" FT /EC_number="4.3.1.2" FT /note="Similar to Clostridium tetanomorphum methylaspartate FT ammonia-lyase SW:MAAL_CLOTT (Q05514) (413 aa) fasta scores: FT E(): 2.1e-44, 36.67% id in 409 aa. Also similar to BP0806, FT 40.500% identity (40.704% ungapped) in 400 aa overlap." FT /db_xref="GOA:Q7VUC6" FT /db_xref="HSSP:1KCZ" FT /db_xref="InterPro:IPR006395" FT /db_xref="UniProtKB/TrEMBL:Q7VUC6" FT /protein_id="CAE43445.1" FT /translation="MKPMQQDVPPIRIEAVRVTAGIGGHWINDQMAVQTGATADGYFFE FT GPTSSTAFPAVRSPSVAYLVSLDLADGQTAHGDCTTVANAGYAGRPLPLRREDVQAVQA FT VLQESLAGRSFAGFREAAGALDAMPLADTLRLPVEYGVSQALLEAAALASRTRMVDVLC FT REFGRPGPTRGPGFAGSCGGAWEANVDKAIVRGLDMFPQSAIQSRAECERLPDYAAWIA FT GRIRKLGAAGYRPDLHFDFHSSLGRMLDNDEDRVLDYLATICERAAGLTVFFEDPMLSG FT SAAEARERMGSLRAKLDARLPNARLIADEWANGPGNVRAFAASGAAHAVQIKMPDNGSL FT LTTIDAIQGCQEHGTLAYLGGSCNETDISSRASIHVGLAFGAWRMLTKPGLGFDEGLMI FT MTNEISRTLSKR" FT misc_feature 257973..258005 FT /note="ScanRegExp hit to PS00626, Regulator of chromosome FT condensation (RCC1) signature 2." FT CDS 258314..259330 FT /transl_table=11 FT /locus_tag="BP3178" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein SMA1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta FT scores: E(): 3.7e-53, 49.07% id in 324 aa" FT /db_xref="GOA:Q7VUC5" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VUC5" FT /protein_id="CAE43446.1" FT /translation="MHARLHSRGARLAARLALAALTAGAAALPQAAAAADSASFPDRPV FT TMVVPFPPGAATDIIARTVAQKLSDKWGQSVVVENRAGATGSIGSTYVARSAPDGHTLL FT VATTSSHTMGPNLSSRLPWDPVSSFAPVTLLAWAPNVLEVNPSVPAKSVQELIALLKKN FT PGKYTFASSGTGSSIHLAGEMFKEQAGVDMVHVPYKGAAPAVADLLGGQVDIMFDTVAL FT SLPHLKAGKLRPLAVTTTRRSSSLPDVPTMREAGLPGYEMAAWIGLLAPAGTPEAVVAR FT IQADVGAVLKMPDVKEKLQAQGTDISGMPGSEFAVLIKDELGRYGQVMKQAGIQPGD" FT misc_feature 258314..258415 FT /note="Signal peptide predicted for BP3178 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.931 between residues 34 and 35" FT RBS 259331..259334 FT CDS 259342..260718 FT /transl_table=11 FT /locus_tag="BP3179" FT /product="conserved hypothetical protein" FT /note="Similar to Agrobacterium tumefaciens AGR_l_2924p FT TR:AAK90029 (EMBL:AE008346) (448 aa) fasta scores: E(): FT 2.3e-29, 34.33% id in 434 aa" FT /db_xref="GOA:Q7VUC4" FT /db_xref="InterPro:IPR005656" FT /db_xref="UniProtKB/TrEMBL:Q7VUC4" FT /protein_id="CAE43447.1" FT /translation="MPAAHATSQPPATRWLAEHALGFDYDMLPADARRIVRHCILDWYA FT VTLAACREPAVAALVDDALEEGAGGASPVIGHAAGVSQGAAALIQGTAAHWLDYDDVNL FT AITGHPTAVVYSALLPLALARGSTAREVMAAFAAGYETACRVGRWLGDVHYRHGYHATA FT TAGAVAAAAACARLMRLSTAQTASALCLAGTQAAGLKALFGTMAKPLHAGLAARNGLMA FT ARLAARGLDAGQQGLEAAQGFAAVLSPAPDWPAATATPPGGLFLGGRLFKYHASCYGTH FT AVIECGRMLRERGARVQDIARITLHAHPGSENMCNIATPRTANEARFSLRMNAAFGLLG FT LDASAIDAYTPARLADPAIAELRDRMRVEFHDDLAMMESRMLIEHHDGSAMQARHDAGV FT PAGSIDDEASRLQAKFHALAAPVIGVGAAGRLRDAILDLDAAPGLHALAVTVPATGGAA FT " FT CDS 260715..261911 FT /transl_table=11 FT /locus_tag="BP3180" FT /product="putative membrane protein" FT /note="Similar to Streptomyces coelicolor putative FT nitrate/nitrite transporter protein SCJ12.25c TR:Q9RI35 FT (EMBL:AL109989) (412 aa) fasta scores: E(): 2.4e-06, 27.6% FT id in 413 aa" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7VUC3" FT /protein_id="CAE43448.1" FT /translation="MSEPRPRRILPIIVLAQFCGTSLWFAGNAASADLGMGDSVAYVAS FT AVQLGFIVGTLCSAWLRIADRYAASRLFFGSCLLGAACNYPLTMLALATLPQPDAAVLI FT LRFLVGVALAGIYPVGIRAAASWFQAGLGHALGFLTGALVLGTSFPHLMRALGARIDGG FT LVLASASAIAVLGGAAMLAWVPDGPYARRAPSSGGGTLAQAWRSLPGLRAAAIGYFGHM FT WELYAFWTFVPFYVAAHAAALGAPMAAPTVSLWAFAIIGLGALGCVGGGFVSRRLGSRP FT VALTQLSLSGLCCVLSPLCFALPTPAFLAFLLFWGIVVVGDSPQFAALVAQESPPAQVG FT SIVTLVNAIGFAITVVSIQLLDALAGALPAPYVMAVLAAGPIIGVAWAGAGGWRPAPR" FT misc_feature 260715..260807 FT /note="Signal peptide predicted for BP3180 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.980) with cleavage site FT probability 0.896 between residues 31 and 32" FT misc_feature join(260739..260792,260835..260903,260922..260990, FT 261018..261086,261105..261173,261201..261269, FT 261387..261455,261468..261536,261573..261671, FT 261729..261797,261816..261884) FT /note="11 probable transmembrane helices predicted for FT BP3180 by TMHMM2.0 at aa 9-26, 41-63, 70-92, 102-124, FT 131-153, 163-185, 225-247, 252-274, 287-319, 339-361 and FT 368-390" FT CDS complement(261908..263446) FT /transl_table=11 FT /locus_tag="BP3181" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PA0586 TR:Q9I5V1 (EMBL:AE004494) (517 aa) fasta FT scores: E(): 2.6e-137, 66.06% id in 498 aa, and to FT Escherichia coli hypothetical protein YcgB or B1188 FT SW:YCGB_ECOLI (P29013) (510 aa) fasta scores: E(): FT 1.1e-127, 60.32% id in 494 aa" FT /db_xref="InterPro:IPR007390" FT /db_xref="UniProtKB/TrEMBL:Q7VUC2" FT /protein_id="CAE43449.1" FT /translation="MNAITGGGELHAVGRAQPISEGSEWTFELIQRYDEAISEIAREYR FT LDTYPNQIEVITSEQMLDAYASAGLPIGYPHWSYGKEFIRNEQYYRKGMQGLAYEIVIN FT SSPCIAYLMEENSMAMQALVIAHACYGHNSFFKGNYLFRQWTDADSILDYLVFARKYVM FT DCEDRYGIEAVEAILDSCHALAAHGVDRYKRPTPISYREEAQRQAEREEHARRQYNDLW FT RTVPRQESPAGAGERRAVFPPEPEENLLYFIEKYAPKLEPWQKELVRIVRKIAQYFYPQ FT GQTKVMNEGWATFWHYTLLNRLHQKGRVTDGFMIEVLQSHTNVVSQRGFDERGYGGVNP FT YALGFSMMQDIRRICERPDEEDRRWFPDIAGSDWLTTLDFAMRNFKDESFISQYLSPRL FT IREFRFFAIADHQANPKLEVAAIHDDEGYRQIRKLLAAQHNRDNQVPDIQVVRYFRESD FT RALVLRHQQSRGRPLAGEDADKVMKHLARLWGFRVRLEEAAPDGTVLSYRQIEP" FT CDS complement(263443..264702) FT /transl_table=11 FT /locus_tag="BP3182" FT /product="conserved hypothetical protein" FT /note="Similar to Vibrio cholerae hypothetical protein FT VC1873 TR:Q9KQX4 (EMBL:AE004263) (423 aa) fasta scores: FT E(): 1e-79, 48.82% id in 426 aa, and to Escherichia coli FT hypothetical protein YeaH or B1784 SW:YEAH_ECOLI (P76235) FT (427 aa) fasta scores: E(): 2.8e-79, 49.52% id in 424 aa" FT /db_xref="InterPro:IPR006698" FT /db_xref="UniProtKB/TrEMBL:Q7VUC1" FT /protein_id="CAE43450.1" FT /translation="MNSLIDRRLNGRNKSAVNRERFLRRYKDQIRKAVQDLIRERSISD FT MDQGGEINLPARDISEPSFRHGEGGDREIVHPGNREFAKGDTFDRPQGGDDGSGSQPGE FT GESVDQFTFSLSRAEFLNLFFEDLELSHLARTQLGDVKQQRWHRAGYTTTGSPSMLSVN FT RTLKASLSRRVALGVGARAALDAAEQELDAAREAGAPQAELDRLLAEVEKCAARVARVP FT FLDDLDLRYRNRVAVAVPMARAVMFCLMDVSGSMDEMKKDLAKRFFTLLYMFLSRKYEH FT VDVIFIRHTDNAEEVDEQTFFYDPKSGGTIVLSALELMHEIVQKRYSPATWNIYAAQAS FT DGDSFGADAGKSARFLAENLLPATRYFAYIEVPDSQEARKSSLWAEYEQESASHFVMRR FT ICERGEIFPVFHDLFKKETV" FT CDS complemen |