EBI Dbfetch

ID   BX640419; SV 1; linear; genomic DNA; STD; PRO; 349672 BP.
XX
AC   BX640419;
XX
DT   09-AUG-2003 (Rel. 76, Created)
DT   23-OCT-2008 (Rel. 97, Last updated, Version 6)
XX
DE   Bordetella pertussis strain Tohama I, complete genome; segment 9/12
XX
KW   complete genome.
XX
OS   Bordetella pertussis
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Alcaligenaceae; Bordetella.
XX
RN   [2]
RP   1-349672
RA   Sebaihia M.;
RT   ;
RL   Submitted (06-AUG-2003) to the EMBL/GenBank/DDBJ databases.
RL   Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute,
RL   Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail:
RL   ms5@sanger.ac.uk
XX
RN   [3]
RA   Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E.,
RA   Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L.,
RA   Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A.,
RA   Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I.,
RA   Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T.,
RA   Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S.,
RA   Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E.,
RA   Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M.,
RA   Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S.,
RA   Barrell B.G., Maskell D.J.;
RT   "Comparative analysis of the genome sequences of Bordetella pertussis,
RT   Bordetella parapertussis and Bordetella bronchiseptica";
RL   Nat. Genet. 35(1):0-0(2003).
XX
DR   EMBL-CON; BX470248.
DR   RFAM; RF00005; tRNA.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..349672
FT                   /organism="Bordetella pertussis"
FT                   /strain="Tohama I"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:520"
FT   CDS             222..833
FT                   /transl_table=11
FT                   /locus_tag="BP2626"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to several proteins of undefined function
FT                   e.g. Pseudomonas aeruginosa hypothetical protein Pa3765
FT                   pa3765 TR:Q9HXN0 (EMBL:AE004795) (194 aa) fasta scores:
FT                   E(): 8.6e-32, 55.026% id in 189 aa"
FT                   /db_xref="InterPro:IPR018715"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVM2"
FT                   /protein_id="CAE42902.1"
FT                   /translation="MTTPMPIYTAFAGHALLAAGPLAEVALAARRAADGDAGAAVFIYE
FT                   DATGRAIDVDTRGTDAEIVARLPLPLPTPVEPEAEPEGSPARPRGRGRPRLGVVAREVT
FT                   LLPRHWDWLAGQPGGASVALRKLVEQARREHAGADALRRGRDAAYTFMSAAAGNLPGFE
FT                   EAVRALYAGDAERLAAHMAGWPADVRAYALRLAGAADLPA"
FT   CDS             complement(join(830..2461,2465..2998))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2627"
FT                   /product="autotransporter (pseudogene)"
FT                   /note="Pseudogene. This CDS contains an in-frame TAG stop
FT                   codon. The sequence has been checked and believed to be
FT                   correct. Similar to several including: Agrobacterium
FT                   tumefaciens Agr_c_1421p agr_c_1421 TR:AAK86587
FT                   (EMBL:AE008011) (848 aa) fasta scores: E(): 2e-26, 29.915%
FT                   id in 819 aa and Bordetella pertussis putative
FT                   autotransporter BapA protein TR:Q9F4B4 (EMBL:AJ277632) (903
FT                   aa) fasta scores: E(): 0.059, 23.692% id in 688 aa"
FT                   /db_xref="PSEUDO:CAE42903.1"
FT   variation       complement(2462..2464)
FT                   /note="in frame TAG stop codon in pertussis; CAG in
FT                   parapertussis and bronchiseptica"
FT   misc_feature    complement(2897..2998)
FT                   /note="Signal peptide predicted for BP2628 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.943) with cleavage site
FT                   probability 0.901 between residues 34 and 35"
FT   misc_feature    complement(2915..2947)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(join(3248..3868,3867..4346))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2629"
FT                   /product="conserved hypothetical protein (pseudogene)"
FT                   /note="Pseudogene. This CDS appears to have a frameshift
FT                   mutation following codon 187. The frameshift occurs within
FT                   a polymeric tract of (GC)3. The sequence has been checked
FT                   and believed to be correct. Weakly similar to Rhizobium
FT                   loti hypothetical protein Mlr9176 TR:Q981Z1 (EMBL:AP003015)
FT                   (386 aa) fasta scores: E(): 4.8e-05, 28% id in 300 aa"
FT                   /db_xref="PSEUDO:CAE42904.1"
FT   variation       complement(3868..3873)
FT                   /note="(GC)3 in pertussis; (GC)4 in parapertussis and
FT                   bronchiseptica"
FT   CDS             complement(4580..5530)
FT                   /transl_table=11
FT                   /locus_tag="BP2630"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q84CT8"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q84CT8"
FT                   /protein_id="CAE42905.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT"
FT   repeat_region   4580..4611
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   complement(4580..5631)
FT   misc_feature    complement(4616..5149)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   misc_feature    complement(5207..5272)
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   repeat_region   complement(5601..5631)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             5633..5875
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2631"
FT                   /product="C-terminal region of a putative exported protein
FT                   (pseudogene)"
FT                   /note="Pseudogene. This CDS is the C-terminal region of
FT                   BP1690 (disrupted by the insertion of IS481 element)."
FT   CDS             complement(5946..8582)
FT                   /transl_table=11
FT                   /locus_tag="BP2632"
FT                   /product="putative GTP-binding protein"
FT                   /note="Similar to several Prokaryotic and Eukaryotic
FT                   proteins of undefined function e.g. Mycobacterium leprae
FT                   hypothetical protein Ml1120 TR:Q9CC83 (EMBL:AL583920) (873
FT                   aa) fasta scores: E(): 7.6e-19, 28.02% id in 910 aa and
FT                   Leishmania major hypothetical protein L6202.3 TR:Q9NKT9
FT                   (EMBL:AC005802) (2354 aa) fasta scores: E(): 1.5e-10,
FT                   31.59% id in 652 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVM1"
FT                   /protein_id="CAE42907.1"
FT                   /translation="MKLRRIALEAFRKFRQPVALEDLDGGLNIIVGPNEAGKSTFVAAL
FT                   RAAFLERYATNKPLADLAPWDMPDARPSVTVDFTHDGHAYSLRKQFLHRARCELLIDGG
FT                   AQRHEGEEAENLLARLLGYEFAGRGLSRPEHAGVPGLLWIQQGEGQTLLAPAGHAGMHV
FT                   RAALTEVSGELAATDGDRLFERVAAERAALLDARGGKPKGAYKEAEEAWARAREQCETL
FT                   AAAKRQVDDDVDRLARLRAEYERAQREQPWQAMAERAAQARQRLEGIARERQALEQLQR
FT                   ELAQADETLALLAEQVGRDQHDAEALAQLRNDAQAAQQAMEPARAALERVQAGQGELAA
FT                   QVAHWRERLACAQAGAERGDLAEQLARLQADAQRQQQALQQAAELAAAVAGHQAQLAES
FT                   AIDADTVARLREQERLLNELRAQQRAMATRLHHRLLPGKQVELDGVALAGDAQVLITSA
FT                   ARVRIDGVGELEILPGGRDLPALLDELRARGAERDALLGKLGVPDLAGAEARLAASEQA
FT                   RRDLDMARKALRIHAPDGVPALQAEQAATARRRDQLQARLQALPPAAAGDMPPLAEIQQ
FT                   ALRAAEQAAEHGARATVAARTELDTQAARAQLLQAQWQAREQDYAGEQRSAQRAQRGLR
FT                   LVEARALRDSLARRAKEAGAALAAHQPELVEQDLQRYERSAALEREAQHRRHGELLQLQ
FT                   GRLEQAGAQGLGEQLLLAEADLQRLARRRTEYVERAEALDLLWRLLDEHRTAATQRLLE
FT                   PLARRLQHYLALLFPGAQWRLDETLMPVALRRDGLEDGLDALSFGTREQLGVLARLAYA
FT                   DLLAQAGRPALLVLDDALVHADDARRDLIKRALFDAASRHQVLLFTCHAEAWRDMGVPL
FT                   RELPSGG"
FT   misc_feature    complement(8466..8489)
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   CDS             complement(8579..9703)
FT                   /transl_table=11
FT                   /locus_tag="BP2633"
FT                   /product="possible exonuclease"
FT                   /note="Weakly similar to many hypothetical proteins and to
FT                   several exonucleases including: Mycobacterium leprae
FT                   hypothetical protein Ml1119 TR:Q9CC84 (EMBL:AL583920) (383
FT                   aa) fasta scores: E(): 2.7e-16, 31.49% id in 381 aa, and to
FT                   Escherichia coli, and exonuclease SbcD or B0398 or Z0496 or
FT                   Ecs0448 SW:SBCD_ECOLI (P13457) (400 aa) fasta scores: E():
FT                   0.12, 28.13% id in 295 aa"
FT                   /db_xref="GOA:Q7VVM0"
FT                   /db_xref="InterPro:IPR014577"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVM0"
FT                   /protein_id="CAE42908.1"
FT                   /translation="MTRFIHTADWQIGRQYGQFDSDDAAVLAEARLEPVARIAAQASEL
FT                   AVDAVLVAGDVFDTQSVSDRTIRRLFGAMQAYEGPWVLIAGNHDAALADSVWSRARRLE
FT                   CIGTNVHVPQDTAAVELPLAGLAVLAAPLTQRHTYDDVTAAFDTMDSAAGLVRVGLAHG
FT                   SVADRLPEQADAANPIAPDRAQRARLDYLALGDWHGCLRIDERTWYAGTPEPDRFRGNA
FT                   PGYALLVEVAAPGAPPQVRQLEVGKYRWSHWVERLDLASDAEDLGHRLAGLQAGDVLRL
FT                   ELHGALSLARRWDALRRDVERAAARVRALVADSAGLVLEPDAADLAALSVDGYVGAAAA
FT                   RLQAMQGDGAQAAAARVALRLLLQYQRELAEGAS"
FT   misc_feature    complement(8936..9700)
FT                   /note="HMMPfam hit to PF02549, DNA repair exonuclease"
FT   CDS             complement(join(9780..9797,9796..11082))
FT                   /pseudo
FT                   /transl_table=11
FT                   /gene="dadA"
FT                   /gene_synonym="dadR"
FT                   /locus_tag="BP2634"
FT                   /product="D-amino acid dehydrogenase small subunit
FT                   (pseudogene)"
FT                   /EC_number="1.4.99.1"
FT                   /note="Pseudogene. This CDS appears to have a frameshift
FT                   mutation following codon 429. The frameshift occurs within
FT                   a polymeric tract of (GC)4. The sequence has been checked
FT                   and believed to be correct. Similar to Escherichia coli
FT                   D-amino acid dehydrogenase small subunit DadA or DadR or
FT                   B1189 or Z1952 or Ecs1684 SWALL:DADA_ECOLI (SWALL:P29011)
FT                   (432 aa) fasta scores: E(): 1.7e-102, 62.29% id in 419 aa,
FT                   and to Ralstonia solanacearum probable oxidoreductase inner
FT                   membrane-bound D-amino acid dehydrogenase DadA or Rsc0926
FT                   or Rs04488 SWALL:CAD14628 (EMBL:AL646061) (429 aa) fasta
FT                   scores: E(): 1e-106, 64.69% id in 422 aa"
FT                   /db_xref="PSEUDO:CAE42909.1"
FT   variation       complement(9797..9804)
FT                   /note="(GC)4 in pertussis; (GC)5 in parapertussis and
FT                   bronchiseptica"
FT   CDS             11218..11685
FT                   /transl_table=11
FT                   /gene="lrp"
FT                   /locus_tag="BP2635"
FT                   /product="leucine-responsive regulatory protein"
FT                   /note="Highly similar to many including: Escherichia coli
FT                   leucine-responsive regulatory protein Lrp SW:LRP_ECOLI
FT                   (P19494) (163 aa) fasta scores: E(): 7.2e-29, 53.28% id in
FT                   152 aa and Neisseria meningitidis leucine-responsive
FT                   regulatory protein Nmb1650 TR:Q9JYC5 (EMBL:AE002515) (154
FT                   aa) fasta scores: E(): 3.7e-35, 60.39% id in 154 aa"
FT                   /db_xref="GOA:Q7VVL9"
FT                   /db_xref="InterPro:IPR019888"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVL9"
FT                   /protein_id="CAE42910.1"
FT                   /translation="MRELDRIDRKILDILQREGRISITELAEKISLSATPCSERVRRLE
FT                   REGVITGYHARINPAALGKTLLVFLEIRLSAKSGDVFDKVKQELLYVPEVMECHLVSGD
FT                   FDYLVKARLSEMNEYRRLLGEILKRLPASAESHSYVVMEEIKETLYLPVDR"
FT   misc_feature    11278..11343
FT                   /note="Predicted helix-turn-helix motif with score 1015
FT                   (+2.64 SD) at aa 21-42, sequence ISITELAEKISLSATPCSERVR"
FT   misc_feature    11299..11610
FT                   /note="HMMPfam hit to PF01037, AsnC family"
FT   CDS             11807..12475
FT                   /transl_table=11
FT                   /locus_tag="BP2636"
FT                   /product="putative exported protein"
FT                   /note="weakly similar to many proteins of unknown function
FT                   including: Neisseria meningitidis hypothetical protein
FT                   Nmb0465 TR:Q9K0U6 (EMBL:AE002403) (233 aa) fasta scores:
FT                   E(): 9.3e-06, 28.79% id in 191 aa and Rhizobium loti
FT                   Mll0832 protein TR:Q98LX6 (EMBL:AP002995) (250 aa) fasta
FT                   scores: E(): 0.00035, 25% id in 244 aa"
FT                   /db_xref="InterPro:IPR007462"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVL8"
FT                   /protein_id="CAE42911.1"
FT                   /translation="MSRLYRYFFRGLITVLPIALTLYLLFIFLAWTEALALTLLRPFIG
FT                   SFYIPGMGLALGILGILAIGYLVSKQRVQRWLLLLEMPFTNLPVVKSIYSSLKSFADYF
FT                   SPSAKTSSQQVVILRMPGNPLELVGLVTRRTLEGLPDGFTQGDRVAVYLPMGYMIGGYT
FT                   VFVPTEWVHPIQMSVEEAMRSSLIAWMARAENGAASGTVATPPAPPAPPAPPAAGGPQA
FT                   "
FT   misc_feature    11807..11914
FT                   /note="Signal peptide predicted for BP2636 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.982) with cleavage site
FT                   probability 0.582 between residues 36 and 37"
FT   misc_feature    11936..12004
FT                   /note="probable transmembrane helix predicted for BP2636 by
FT                   TMHMM2.0 at aa 7-29"
FT   CDS             12548..13750
FT                   /transl_table=11
FT                   /locus_tag="BP2637"
FT                   /product="putative lipoprotein"
FT                   /note="no significant database hits"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVL7"
FT                   /protein_id="CAE42912.1"
FT                   /translation="MIASRAGSLRRHDGSGSLSMSTAAPVPGGILIACAAAAADANQQA
FT                   LLQYVQGLGLADAVTLSCIRRGETAALSMTLAPAFQARHAPGHDTTGIAASLGLRPEHD
FT                   SGDLEREILLAILASPVAFPLPEAAELASAVRIRRHIVQAARRTALAFDTEQAERPQDD
FT                   WVYDEQRGFTVLPGRPLVEALRKATQPDESGRLYSFSCYRATEYVTVLGIAQELQACNP
FT                   ELAARLQRQWETRAVMSGLFHDTFLREYGSLQDPLPPRYYVPGDRLWFRNPDEHSSNVE
FT                   GYEGSWVFYLGSGLFNNFWKRDQPYTLAGKCVEIYHWRHGARRNEAGKLIIDESIVEAR
FT                   VHATMADPQATARVLERMVRIRDPQGIYAEGGCIDATRECARWVGPGHTDIVLPDFPRP
FT                   A"
FT   misc_feature    12548..12661
FT                   /note="Signal peptide predicted for BP2637 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.961) with cleavage site
FT                   probability 0.769 between residues 38 and 39"
FT   misc_feature    12617..12649
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(13752..15482)
FT                   /transl_table=11
FT                   /locus_tag="BP2638"
FT                   /product="putative exported protein"
FT                   /note="Highly similar to several Agrobacterium tumefaciens
FT                   Agr_l_1912p agr_l_1912 TR:AAK89528 (EMBL:AE008295) (573 aa)
FT                   fasta scores: E(): 9.6e-149, 63.73% id in 579 aa and to
FT                   Rhizobium loti ABC transporter, periplasmic
FT                   substrate-binding protein Mll5302 TR:Q98C44 (EMBL:AP003006)
FT                   (443 aa) fasta scores: E(): 6.2e-08, 25.73% id in 443 aa"
FT                   /db_xref="GOA:Q7VVL6"
FT                   /db_xref="InterPro:IPR014597"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVL6"
FT                   /protein_id="CAE42913.1"
FT                   /translation="MKMRMHAMAAAIALIGTQAAWAGEPEAKKWVDSEFQPSSLSKDQQ
FT                   MAEMKWFIDAAEKLKAKGVSEINVVSETITTHEYEAKTLARAFTEITGIKVNHDLIQEG
FT                   DVVEKLQTSMQSGKSIYDGWISDSDLIGTHYRYGAILPLSDYISGAGKEYTNPGLDLKD
FT                   FIGTKFTTAPDGKLYQLPDQQFANVYWFRVDWFARKDLQDKLKAKYGYELGVPTNWSAY
FT                   EDIAEFFSNDVKELDGKRVYGHMDYGKKDPSLGWRFTDAWLSMAGAADKGLPNGMPVDE
FT                   WGIRVADDKCTPVGASVARGGATNSPAAVYALTKYVDWMKKYAPQQATGMTFSESGPVP
FT                   AQGQIAQQIFWYTAFTADMTKKGLPVVNEDGTPKWRMAPSPYGPYWKDGMQNGYQDVGS
FT                   WTFFKSTDANRLAGAWLYAQFVTSKTVSLKKSITGLTFIRDSDINSEFFTKNAANYGGL
FT                   VEFYRSPARVAWTPTGNNVPDYPKLAQLWWKNVATAVTGEKTPQQAMDTLANEMDQVLA
FT                   RLERAGMAQCAPKLNPKSDPAKWLSDQHAPWKKLANEKPQGQTIAYEKLLQAWREGKVR
FT                   "
FT   misc_feature    complement(15417..15482)
FT                   /note="Signal peptide predicted for BP2638 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.998 between residues 22 and 23"
FT   CDS             complement(15600..15908)
FT                   /transl_table=11
FT                   /locus_tag="BP2639"
FT                   /product="putative integral membrane protein"
FT                   /note="Similar to Rhizobium loti hypothetical protein
FT                   Msl0703 protein TR:Q98M71 (EMBL:AP002995) (97 aa) fasta
FT                   scores: E(): 6.2e-10, 50% id in 78 aa"
FT                   /db_xref="InterPro:IPR018678"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVL5"
FT                   /protein_id="CAE42914.1"
FT                   /translation="MFGWMVWTTPVAVFFACIALMLAGMTIWELRSPTRLRKGFLPIAT
FT                   TRGDRLFIGLMIAAWINLAYVGLGSKAMEWFALDEPPTVWIGFVLSMVVLALVMRKG"
FT   misc_feature    complement(join(15609..15659,15705..15755,15825..15890))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BP2639 by TMHMM2.0 at aa 6-28, 51-68 and 83-100"
FT   CDS             complement(15921..16733)
FT                   /transl_table=11
FT                   /locus_tag="BP2640"
FT                   /product="putative ABC transport protein, inner membrane
FT                   component"
FT                   /note="Similar to many putative ABC transport proteins e.g.
FT                   Rhizobium meliloti putative transport system permease ABC
FT                   transporter protein Smc02516 TR:CAC47598 (EMBL:AL591792)
FT                   (274 aa) fasta scores: E(): 1.2e-79, 73.4% id in 267 aa"
FT                   /db_xref="GOA:Q7VVL4"
FT                   /db_xref="InterPro:IPR000515"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVL4"
FT                   /protein_id="CAE42915.1"
FT                   /translation="MAERRSSWRGIFLALYLLFAVLPLYWMVNMSFKTNTEILGSLTLW
FT                   PSDFTVEHYRTIFTDPAWYSGYINSLIYVLINTVISLAVALPAAYAFSRYRFIGDKHVF
FT                   FWLLTNRMTPPAVFLLPFFQLYTSLGLMDTHLAVALAHLVFNVPLAVWILEGFMSGVPR
FT                   EIDETAYVDGYSFPRFFLTIFLPLIKAGVGVAAFFCFMFSWVELLLARTLTSINAKPIV
FT                   ATMTRTVSASGMDWGVLAAAGVLTIVPGVIVIWFVRHYIAKGFAMGRV"
FT   misc_feature    complement(join(15963..16028,16131..16196,16260..16325,
FT                   16356..16421,16458..16523,16647..16712))
FT                   /note="6 probable transmembrane helices predicted for
FT                   BP2640 by TMHMM2.0 at aa 7-29, 70-92, 104-126, 136-158,
FT                   179-201 and 235-257"
FT   misc_feature    complement(16056..16265)
FT                   /note="HMMPfam hit to PF00528, Binding-protein-dependent
FT                   transport systems inner membrane component"
FT   misc_feature    complement(16176..16262)
FT                   /note="ScanRegExp hit to PS00402, Binding-protein-dependent
FT                   transport systems inner membrane comp. sign."
FT   CDS             complement(join(16726..17157,17159..17617))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2641"
FT                   /product="putative ABC transport protein, inner membrane
FT                   component (pseudogene)"
FT                   /note="Pseudogene. This CDS appears to have a frameshift
FT                   mutation following codon 153. The frameshift occurs within
FT                   a tract of (C)3. The sequence has been checked and believed
FT                   to be correct. Similar to many putative ABC transport
FT                   proteins e.g. Rhizobium meliloti putative transport system
FT                   permease ABC transporter protein Smc02517 TR:CAC47597
FT                   (EMBL:AL591792) (288 aa) fasta scores: E(): 8.3e-72, 63.98%
FT                   id in 286 aa and Thermococcus litoralis trehalose/maltose
FT                   transport inner membrane protein MalF TR:Q9HH26
FT                   (EMBL:AF307053) (295 aa) fasta scores: E(): 7.4e-24, 34.79%
FT                   id in 273 aa."
FT                   /db_xref="PSEUDO:CAE42916.1"
FT   misc_feature    complement(16879..17100)
FT                   /note="HMMPfam hit to PF00528, Binding-protein-dependent
FT                   transport systems inner membrane component"
FT   misc_feature    complement(17011..17097)
FT                   /note="ScanRegExp hit to PS00402, Binding-protein-dependent
FT                   transport systems inner membrane comp. sign."
FT   variation       complement(17158..17160)
FT                   /note="(C)3 in pertussis; (C)2 in parapertussis and
FT                   bronchiseptica"
FT   CDS             complement(17614..18702)
FT                   /transl_table=11
FT                   /locus_tag="BP2642"
FT                   /product="probable ATP-binding ABC transporter protein"
FT                   /note="Similar to Ralstonia solanacearum probable
FT                   ATP-binding ABC transporter protein Rsc3047 or Rs00488
FT                   SWALL:Q8XUY6 (EMBL:AL646073) (365 aa) fasta scores: E():
FT                   9.2e-74, 61.74% id in 366 aa."
FT                   /db_xref="GOA:Q7VVL3"
FT                   /db_xref="HSSP:1G29"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVL3"
FT                   /protein_id="CAE42917.1"
FT                   /translation="MASIELDLAYAYGPDPRGEDDYALLPLRFTFEDGGAYALLGPSGC
FT                   GKTTLLNCVSGLLRPSQGRVLFDGQDVTGRTPQQRNIAQVFQFPVVYDTMTVADNLAFP
FT                   LRNRGVPQAHIRERVGRIAEMLELSAVLERRASGLTADAKQKISLGRGLVRSDVSAILF
FT                   DEPLTVIDPHLKWELRRKLKEIHHEFKLTLIYVTHDQTEALTFAERVMVMSRGRAVQVG
FT                   TPDDLFERPAHTFVGHFIGSPGMNFLPAEWRDGALRIGSQRLEGLTAGQAEALAQGGPV
FT                   KLGVRPEYLRLVAPHTPGALPVRVARVQDVGTYALLGAEFESIALRARLPLDAALPGAG
FT                   DTVWLAVLNRHTCFYRDEELIR"
FT   misc_feature    complement(18055..18603)
FT                   /note="HMMPfam hit to PF00005, ABC transporter"
FT   misc_feature    complement(18559..18582)
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   CDS             complement(join(18702..18716,18715..19779))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2642A"
FT                   /product="probable ATP-binding ABC transporter protein
FT                   (pseudogene)"
FT                   /note="Pseudogene. This CDS contains a frameshift following
FT                   codon 355. Similar to Ralstonia solanacearum putative
FT                   sugar-phosphate ATP-binding ABC transporter protein Rsc3046
FT                   or Rs00487 SWALL:Q8XUY7 (EMBL:AL646073) (372 aa) fasta
FT                   scores: E(): 1.2e-65, 59.72% id in 365 aa."
FT                   /db_xref="PSEUDO:CAE42918.1"
FT   misc_feature    complement(19159..19698)
FT                   /note="HMMPfam hit to PF00005, ABC transporter"
FT   misc_feature    complement(19345..19389)
FT                   /note="ScanRegExp hit to PS00211, ABC transporters family
FT                   signature. Confirmed by InterPro eMOTIF pattern match."
FT   misc_feature    complement(19654..19677)
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   CDS             19905..20693
FT                   /transl_table=11
FT                   /gene="glpR"
FT                   /locus_tag="BP2643"
FT                   /product="glycerol-3-phosphate regulon repressor protein"
FT                   /note="Similar to many e.g. Pseudomonas aeruginosa
FT                   glycerol-3-phosphate regulon repressor GlpR or Pa3583
FT                   SW:GLPR_PSEAE (Q51391) (251 aa) fasta scores: E(): 5e-48,
FT                   55.55% id in 252 aa"
FT                   /db_xref="GOA:Q7VVL2"
FT                   /db_xref="InterPro:IPR018356"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVL2"
FT                   /protein_id="CAE42919.1"
FT                   /translation="MTLNPRQSALVELVRTQGSATIEALARHFDVTLQTVRRDVNLLSE
FT                   AGMLSRFHGGVRIESSTIENIAYRKRQGLHAEGKRRIAEAVARAVPDGCSLLINIGTTT
FT                   EAIARALLRHRGLRVITNNLHVADILSDNPDCEVIVAGGVVRSRDRGIVGEATLDFIRQ
FT                   FKVDIGLIGISGIEADGTLRDYDFREVRVARAIIEQSREVWLAADSSKFQRQAMVELVH
FT                   VSRIHRFFTDTQPQEPLAQVLQDAGVRCDVAAQSAGAAAA"
FT   misc_feature    19920..20024
FT                   /note="ScanRegExp hit to PS00894, Bacterial regulatory
FT                   proteins, deoR family signature. Confirmed by InterPro
FT                   eMOTIF pattern match."
FT   misc_feature    19920..20600
FT                   /note="HMMPfam hit to PF00455, Bacterial regulatory
FT                   proteins, deoR family"
FT   misc_feature    19962..20027
FT                   /note="Predicted helix-turn-helix motif with score 1538
FT                   (+4.43 SD) at aa 27-48, sequence ATIEALARHFDVTLQTVRRDVN"
FT   CDS             20733..22337
FT                   /transl_table=11
FT                   /locus_tag="BP2644"
FT                   /product="putative glycerol-3-phosphate dehydrogenase"
FT                   /note="Similar to several Prokaryotic and Eukaryotic
FT                   glycerol-3-phosphate dehydrogenases including: Deinococcus
FT                   radiodurans glycerol-3-phosphate dehydrogenase Dr1019
FT                   TR:Q9RVK8 (EMBL:AE001953) (522 aa) fasta scores: E():
FT                   6.5e-102, 55.51% id in 535 aa and to Caenorhabditis elegans
FT                   probable glycerol-3-phosphate dehydrogenase, mitochondrial
FT                   precursor T25g3.4 SW:GPDM_CAEEL (P90795) (722 aa) fasta
FT                   scores: E(): 2e-58, 41.31% id in 547 aa"
FT                   /db_xref="GOA:Q7VVL1"
FT                   /db_xref="InterPro:IPR000447"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVL1"
FT                   /protein_id="CAE42920.1"
FT                   /translation="MTAPTLAPIDPPARAQLLTDLQGAPDWDVIVIGGGATGLGTAVDA
FT                   AARGYRTLLVEAADFAKGTSSKATKLVHGGVRYLAQGNISLVREALHERGLLNRNAPHL
FT                   VWPLGFVVPAYSLLDQPFYGVGLKMYDMLAGKLNLAPSRWLSRGETLRHAATVAERVNG
FT                   RALRGGILYYDGQFDDARLAIALMRTLYDLGGVALNYARAVGLTRTDGRVDGVTVADAL
FT                   GELRVTLRAKCVVNATGVWVDAVRRMDDPAAQTMVAPSQGVHLTLPRDFLPGEDAILIP
FT                   KTDDGRVLFVVPWNGHTIVGTTDTPRTDLPLDPQAGQNEIDFILATAARYLSRKPTRAD
FT                   VTSVWAGLRPLVKATGEASTKSLSREHTIVVSKGGLVTVTGGKWTTYRKMAQDVVDTAI
FT                   EHKLLAAAPCRTSELPLHGAPADGQPNGAPHGTPDSYYGTDLATLRALPGADRMLVKAS
FT                   ALTEAHVRYAARHELARTVEDVLARRNRALFLDAEAALLAAPEVARILAQELGHDEAWS
FT                   RATLAEFEAVAAHYRLA"
FT   misc_feature    20802..22316
FT                   /note="HMMPfam hit to PF01224,"
FT   misc_feature    21168..21215
FT                   /note="ScanRegExp hit to PS00038, Myc-type,
FT                   'helix-loop-helix' dimerization domain signature."
FT   misc_feature    21873..21905
FT                   /note="ScanRegExp hit to PS00978, FAD-dependent
FT                   glycerol-3-phosphate dehydrogenase signature 2. Confirmed
FT                   by InterPro eMOTIF pattern match."
FT   CDS             22418..23158
FT                   /transl_table=11
FT                   /locus_tag="BP2645"
FT                   /product="putative IclR-family regulatory protein"
FT                   /note="Similar to many IclR-family regulatory proteins
FT                   including: Pectobacterium carotovorum subsp. carotovorum
FT                   global regulatory protein, KdgR TR:Q9RB25 (EMBL:AF135395)
FT                   (263 aa) fasta scores: E(): 2.6e-20, 33.6% id in 247 aa and
FT                   Bacillus halodurans transcriptional regulator Bh2137
FT                   TR:Q9KAZ9 (EMBL:AP001514) (251 aa) fasta scores: E():
FT                   7.6e-21, 29.04% id in 241 aa"
FT                   /db_xref="GOA:Q7VVL0"
FT                   /db_xref="InterPro:IPR005471"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVL0"
FT                   /protein_id="CAE42921.1"
FT                   /translation="MDTTTLKGLTVLEALVRSGESRSAGELAQELGLVRSNVHRTLQTL
FT                   AHAGYVEAIADSAKYRPTLRLWELGNVVVQRFDIRKQAYPTMQALAAHTGETILLAVRQ
FT                   RLEVCFLDKIQTEKPVGTFVLLGARAPVHCTAPGKAILSRCSHGELQALPETFERYTAK
FT                   TITTREALIAELAIARERGYAINTSEWREGVNSLGVPITAPGGEALGAISVTGPDTRVT
FT                   LKKLDGYAPVLVEAARELSRRIGG"
FT   misc_feature    22481..22546
FT                   /note="Predicted helix-turn-helix motif with score 1391
FT                   (+3.92 SD) at aa 22-43, sequence RSAGELAQELGLVRSNVHRTLQ"
FT   misc_feature    22595..23146
FT                   /note="HMMPfam hit to PF01614, Bacterial transcriptional
FT                   regulator"
FT   CDS             complement(join(23166..23735,23737..24036))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2646"
FT                   /product="putative oxidoreductase (pseudogene)"
FT                   /note="Pseudogene. This CDS appears to have a frameshift
FT                   mutation following codon 100. The sequence has been checked
FT                   and believed to be correct. Similar to many proposed
FT                   oxidoreductases including: Pseudomonas sp.
FT                   3-alpha-hydroxysteroid dehydrogenase TR:Q59718
FT                   (EMBL:D50325) (255 aa) fasta scores: E(): 8e-22, 40.47% id
FT                   in 252 aa and Flavobacterium sp. N-acylmannosamine
FT                   1-dehydrogenase SW:DHMA_FLAS1 (P22441) (270 aa) fasta
FT                   scores: E(): 1.7e-10, 29.13% id in 278 aa."
FT                   /db_xref="PSEUDO:CAE42922.1"
FT   misc_feature    complement(23259..23342)
FT                   /note="HMMPfam hit to PF00678,"
FT   variation       complement(23737..23738)
FT                   /note="(C)2 in pertussis; (C)1 in parapertussis and
FT                   bronchiseptica"
FT   CDS             complement(24033..25052)
FT                   /transl_table=11
FT                   /locus_tag="BP2647"
FT                   /product="putative exported protein"
FT                   /note="Similar to Rhizobium meliloti conserved hypothetical
FT                   protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta
FT                   scores: E(): 1.4e-29, 33.76% id in 308 aa and Comamonas
FT                   testosteroni hypothetical protein TR:Q9RHM9 (EMBL:AB029044)
FT                   (326 aa) fasta scores: E(): 2.7e-27, 33.65% id in 312 aa"
FT                   /db_xref="GOA:Q7VVK9"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVK9"
FT                   /protein_id="CAE42923.1"
FT                   /translation="MSGAAPTTREETGKMKTSMHFVRTWCSALCALVVLAGASLPARAD
FT                   YPTRNITLIVPFPAGGSVDMLARLFAAHVGAPFKDKVVVINRPGASGVVGETAMARAEP
FT                   DGYTIMFQGAPAAINAEIYKQPLYGAKDLQPVGLIMTAPFVVATYPESEIKTLADIKTV
FT                   AAGMPNGLTTAEAGISTRLVAEMYRLITKDKLYLVPYNGGPAAAMSLVRHETGLYFSDL
FT                   TSVTSYILSGQFRALAVTSAKRVKDHPTIPTTAEAGVPEFTPQTWFGVFTRTGTPPEIV
FT                   QALNQAVDGFLRNPAVIQKIEQVGGTPTHMSVAQFEDYYGRQRLLWRDVIKRAEIPLQ"
FT   misc_feature    complement(24921..25052)
FT                   /note="Signal peptide predicted for BP2647 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.979) with cleavage site
FT                   probability 0.972 between residues 44 and 45"
FT   CDS             complement(25049..26431)
FT                   /transl_table=11
FT                   /locus_tag="BP2648"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to several including: Shewanella
FT                   frigidimarina fumarate reductase flavoprotein subunit
FT                   precursor SW:FRDA_SHEFR (Q02469) (596 aa) fasta scores:
FT                   E(): 1.1e-21, 30.71% id in 459 aa and Salmonella typhi
FT                   hypothetical protein R0146 TR:Q9L5J6 (EMBL:AF250878) (467
FT                   aa) fasta scores: E(): 8.5e-17, 28.86% id in 485 aa"
FT                   /db_xref="GOA:Q7VVK8"
FT                   /db_xref="HSSP:1D4D"
FT                   /db_xref="InterPro:IPR003953"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVK8"
FT                   /protein_id="CAE42924.1"
FT                   /translation="MSAQEVKEVDVVVVGGGLAGHSAAIEVSKAGKSVAVLEKMPDIGG
FT                   STVLSGGSFAFAGTPEQAGQGIDDSPERLRRDLLACAAREQARELIDVYVAHQLDAYRL
FT                   LRHLGVVFDPIQFSSNQSVPRSHPTSPARVMALMNEHLRQQYGVAVQTSAPVSALHRDP
FT                   ASRRIVAVTARHADRAVEYRARQGVILASGGFSQSPELMSMLAPHLENVLLTGGAGNQG
FT                   DGLKIAWAHGAAIADIDALVPTFGALQEAVPSEPNTILLAYYRGGIVVNSTGERFVDES
FT                   KSYKAIGKASMGQAGARGFQIFDQKVMDLSVRAPKTLDFQRAFDLGRVTAADTIVELAE
FT                   RIGIDPQALARTVSEYNDGIRQQRDSFGRRHLSNQVGEAFPLEHPRYYAYATVPYMATT
FT                   YAGIKVDRRMRVVDVWGKPIDGLYAAGEIIGGAHGRGYMTGASLGKALIFGRVAAWSAI
FT                   SG"
FT   CDS             complement(26464..27324)
FT                   /transl_table=11
FT                   /locus_tag="BP2649"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to several e.g. Mycobacterium tuberculosis
FT                   CDC1551 conserved hypothetical protein mt3614 TR:AAK47972
FT                   (EMBL:AE007164) (278 aa) fasta scores: E(): 4e-17, 29.31%
FT                   id in 290 aa"
FT                   /db_xref="GOA:Q7VVK7"
FT                   /db_xref="InterPro:IPR006992"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVK7"
FT                   /protein_id="CAE42925.1"
FT                   /translation="MIVDMRLRPPIPGFARSTLYQAGPKTSHPDFPVEPSVGQCSLPLL
FT                   ISEMDAAGVAVGVVPGRYSMEPFGIVSNDELATLFADHPGRFVGFMGLDLGWPMQRMLD
FT                   EIDARVGTPGFRGVALEPTISADASFCGMNDKRLYPIYEACVKHGVPVSVTLSAVLQAF
FT                   TKRPYEHSNPVQAYQVAIDFPGLDIVIAHAAYPWVMEMIGVCLTCPNVWLSPDLYLTNV
FT                   FPGAQEYAKAAATYLPRRTLFGTGYPAKPFKPMIDAYAAWGWPQDVVAAILGGNAARLL
FT                   RLADQ"
FT   CDS             complement(join(27574..27822,27821..28246))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2650"
FT                   /product="conserved hypothetical protein (pseudogene)"
FT                   /note="Pseudogene. This CDS appears to have an internal
FT                   deletion that has lead to a shift in reading frame
FT                   following codon 142. The sequence has been checked and is
FT                   believed to be correct. Similar to several e.g. Rhizobium
FT                   meliloti conserved hypothetical protein Smb20212
FT                   TR:CAC48605 (EMBL:AL603642) (226 aa) fasta scores: E():
FT                   1.2e-53, 65.02% id in 223 aa and Enterococcus faecalis
FT                   putative pfPI-like cystein-proteinase PI TR:CAC41347
FT                   (EMBL:AJ312276) (226 aa) fasta scores: E(): 4.9e-19, 35.26%
FT                   id in 224 aa."
FT                   /db_xref="PSEUDO:CAE42926.1"
FT   misc_feature    complement(join(27592..27822,27821..28195))
FT                   /note="HMMPfam hit to PF01965, ThiJ/PfpI family"
FT   variation       complement(27821)
FT                   /note="11 bp deletion in pertussis relative to
FT                   parapertussis and bronchiseptica"
FT   CDS             28406..29209
FT                   /transl_table=11
FT                   /locus_tag="BP2651"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to several e.g. Pseudomonas aeruginosa
FT                   hypothetical protein Pa0339 pa0339 TR:Q9I6F4
FT                   (EMBL:AE004471) (251 aa) fasta scores: E(): 5.6e-44, 50% id
FT                   in 254 aa"
FT                   /db_xref="InterPro:IPR008551"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVK6"
FT                   /protein_id="CAE42927.1"
FT                   /translation="MCLAVLALHAIPGLPVLIAANRDEFHARPTAEATRWPGSPSIYAG
FT                   RDLQAGGTWMGVSDHGRYAVVTNFRDPRNIQPDAPSRGALVEAFLRGAASAQEYLHDVH
FT                   ARGARYNGFNLIVGDAGGAWYCSNRDGAPRRLAAGVYALSNHLLDTPWPKLARTKAAFE
FT                   RIIAAAPQPDLAALYAALADPTPAADHELPATGLALERERLLSSPFIVSPDYGTRSACI
FT                   LALHDDGRGELHERRFRPDGAIAGQTDLDFPWRAAHAELHRASCV"
FT   CDS             29202..29705
FT                   /transl_table=11
FT                   /locus_tag="BP2652"
FT                   /product="putative exported protein"
FT                   /note="no significant database hits"
FT                   /db_xref="GOA:Q7VVK5"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVK5"
FT                   /protein_id="CAE42928.1"
FT                   /translation="MSKQFRLARAAGPRARLTGELSMNKRHERAWMAAALAAGSIALGG
FT                   AVQAQGALPAVQQQGSVQFVTGGVGLDESEAMKAASKDYPLALTFAARGDGRAGLYLAD
FT                   VAVQILDRTGKPVLDAKADGPYLLAKLPAGTYRVKATSGGVEQTRQVSVRPGSTARAVF
FT                   EWKD"
FT   misc_feature    29202..29348
FT                   /note="Signal peptide predicted for BP2652 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.997) with cleavage site
FT                   probability 0.907 between residues 49 and 50"
FT   CDS             complement(29796..30767)
FT                   /transl_table=11
FT                   /locus_tag="BP2653"
FT                   /product="putative exported protein"
FT                   /note="Similar to many including: Burkholderia cepacia
FT                   hypothetical 35.5 kDa protein TR:AAK81675 (EMBL:AF029344)
FT                   (337 aa) fasta scores: E(): 3.1e-43, 42.63% id in 319 aa
FT                   and Rhizobium meliloti conserved hypothetical protein
FT                   Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores:
FT                   E(): 5.2e-43, 42.05% id in 321 aa"
FT                   /db_xref="GOA:Q7VVK4"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVK4"
FT                   /protein_id="CAE42929.1"
FT                   /translation="MRVMQKGLMAALLLGSAFASAAAADSFPQRPVTIVVPFTPGGAVD
FT                   IVARTVAAGLSEQWSQSVVVENKAGAGGAIGIQSVARAKPDGYTLLLGSVGPVTVNPSL
FT                   GPVGYDVAKELAPVVLLAKTPAVLVTLPSAPVDDVAQFVKQAKAQPGGLNYGSAGTGNI
FT                   THLVSEYFLSSAGLAANHIPYKGSAPAITDMLGGRLDFMFDVVPTAQPLIKSGKYKALA
FT                   VTTIKRSDVLPDVPTLDELGYKGFDVSSWFSLMAPAGTPDAVIGQINAAVNEVLRSDAS
FT                   RERLAAIGAYSAGGTPEQLGEFVRSETARWKKLIDERGIRAN"
FT   misc_feature    complement(30696..30767)
FT                   /note="Signal peptide predicted for BP2653 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.709 between residues 24 and 25"
FT   CDS             complement(30806..31750)
FT                   /transl_table=11
FT                   /locus_tag="BP2654"
FT                   /product="probable dihydrodipicolinate synthase"
FT                   /note="Similar to many e.g. Neisseria meningitidis
FT                   dihydrodipicolinate synthase DapA or Nmb0929 SW:DAPA_NEIMB
FT                   (Q9JZR4) (291 aa) fasta scores: E(): 3.8e-17, 27.57% id in
FT                   301 aa"
FT                   /db_xref="GOA:Q7VVK3"
FT                   /db_xref="InterPro:IPR019775"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVK3"
FT                   /protein_id="CAE42930.1"
FT                   /translation="MAARFPGYVPAGVIPAALMPFNEDLSIDEKSLRAHIRDLASVRGI
FT                   SALCVNGVSQEIPGLTLDEQRRALDVMADEVGDQVPLMHGVYAHGPLDAARIARQAEAG
FT                   GASCLLVFPPAVFVRGAAMLPEMTLGHYKAIADATDLPLIVFQYETSTGMAHPLDTLVK
FT                   LAEAVPSVMAIKDRSNNPIEHERNIRVLQSLARPVNVLTTHSAWLMPSLVLGCNGILSG
FT                   SGSVHADLHVALWEAVQANDLAAARAINDQIYPMASCFYSAPTLDMHTRMKEALVMLGR
FT                   LPSGRVRLPWVDLSDAERARVRAALVQAGRLPA"
FT   misc_feature    complement(30869..31663)
FT                   /note="HMMPfam hit to PF00701, Dihydrodipicolinate
FT                   synthetase family"
FT   misc_feature    complement(31040..31084)
FT                   /note="ScanRegExp hit to PS00678, Trp-Asp (WD) repeats
FT                   signature."
FT   CDS             31846..32655
FT                   /transl_table=11
FT                   /locus_tag="BP2655"
FT                   /product="putative IclR-family regulatory protein"
FT                   /note="Similar to several putative IclR-family regulatory
FT                   proteins e.g. Rhizobium loti transcription regulator
FT                   Mll9009 TR:Q982L6 (EMBL:AP003015) (269 aa) fasta scores:
FT                   E(): 3.2e-26, 37.55% id in 245 aa"
FT                   /db_xref="GOA:Q7VVK2"
FT                   /db_xref="InterPro:IPR005471"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVK2"
FT                   /protein_id="CAE42931.1"
FT                   /translation="MKNIPASAPRDTAQSLRRSIEILKALSAPMKRGFSLSELSRMAGL
FT                   PHPTVLRLLRHLTGLGMVAWDPATKIYRLGTLTFEPGLAAAEHCDIRGLCGDSLDRLQA
FT                   ETQDTCYLTMRSGFDAVCIDRREGASPIRVLTLDIGSRRPLGVGAAGLAILDCLPEEEA
FT                   ETVIQASESKLDRYNRMSTDIMRMLLQETRERGYAVCGNWVTLGVTAVAVPICIEDGRP
FT                   IGSLSVSAVSHRMPADRWPGIARALRAEMHEIHRKLQGPSSRPGYGG"
FT   misc_feature    31945..32010
FT                   /note="Predicted helix-turn-helix motif with score 1637
FT                   (+4.76 SD) at aa 5-26, sequence FSLSELSRMAGLPHPTVLRLLR"
FT   misc_feature    32059..32616
FT                   /note="HMMPfam hit to PF01614, Bacterial transcriptional
FT                   regulator"
FT   CDS             complement(32732..33106)
FT                   /transl_table=11
FT                   /locus_tag="BP2656"
FT                   /product="putative exported protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein Pa0540 pa0540 TR:Q9I5Z6 (EMBL:AE004490) (128 aa)
FT                   fasta scores: E(): 2.6e-12, 43.3% id in 127 aa and
FT                   Neisseria meningitidis putative membrane protein nma1176
FT                   TR:Q9JUR4 (EMBL:AL162755) (127 aa) fasta scores: E():
FT                   3.7e-11, 42.5% id in 120 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVK1"
FT                   /protein_id="CAE42932.1"
FT                   /translation="MNATAAFLLAAALLPLVPAIAAKAGGRRYDNNDPRPWLAGQAGWR
FT                   ARANSAQANTFEALPFFFAAVLYALHTQAPAATLHVLMGAWLVARLVYVALYIGGRGNL
FT                   RSLIWLAALLVNVAILLAGS"
FT   misc_feature    complement(join(32738..32788,32810..32875,32891..32941))
FT                   /note="4 probable transmembrane helices predicted for
FT                   BP2656 by TMHMM2.0 at aa 4-26, 55-72, 77-99 and 106-123"
FT   misc_feature    complement(33044..33106)
FT                   /note="Signal peptide predicted for BP2656 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.836 between residues 21 and 22"
FT   CDS             complement(33213..33905)
FT                   /transl_table=11
FT                   /locus_tag="BP2657"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Pasteurella multocida hypothetical
FT                   protein Pm1879 TR:Q9CJW2 (EMBL:AE006225) (205 aa) fasta
FT                   scores: E(): 1.4e-20, 40.51% id in 195 aa and Escherichia
FT                   coli hypothetical 23.4 kDa protein in melb-fumb intergenic
FT                   region YjdF or B4121 SW:YJDF_ECOLI (P39270) (209 aa) fasta
FT                   scores: E(): 7.7e-18, 40.75% id in 211 aa"
FT                   /db_xref="InterPro:IPR014509"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVK0"
FT                   /protein_id="CAE42933.1"
FT                   /translation="MTEARAGLFARRRYLPALAVLYAALWLALAIEPHDRSDWLLENAL
FT                   VLGFGVALYATRRWFVFSRVSYTLIFLYLCLHAVGAHYTYSLVPYDAWWQRLTGHSLDQ
FT                   LLGWERNQFDRLVHFSYGLLLAYPIREIFLRVVDVRGFWGYLLPLDVALSTSALYELIE
FT                   WGAAEFFGGELGVAYLGTQGDIWDAQKDMALAGLGALIAMLLTALFNRGARRDPARDWV
FT                   DRMKPGHT"
FT   misc_feature    complement(join(33279..33329,33642..33698,33720..33785,
FT                   33816..33866))
FT                   /note="4 probable transmembrane helices predicted for
FT                   BP2657 by TMHMM2.0 at aa 13-30, 40-62, 69-88 and 192-209"
FT   CDS             complement(33898..34314)
FT                   /transl_table=11
FT                   /locus_tag="BP2658"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein Pa0868 pa0868 TR:Q9I573 (EMBL:AE004521) (137 aa)
FT                   fasta scores: E(): 3.6e-25, 56.29% id in 135 aa. Also
FT                   similar to a region in many peptide chain release factors
FT                   e.g. Mycobacterium leprae peptide chain release factor 1
FT                   PrfA or Ml1134 SW:RF1_MYCLE (P45833) (361 aa) fasta scores:
FT                   E(): 1.9, 29.91% id in 117 aa"
FT                   /db_xref="GOA:Q7VVJ9"
FT                   /db_xref="InterPro:IPR000352"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVJ9"
FT                   /protein_id="CAE42934.1"
FT                   /translation="MLHVLGSLYLDERELDFDMIRAQGAGGQNVNKVSSAIHLRFDVRA
FT                   SSLPDSVKETVLALADRRISSDGVIVIKAQTHRSQEKNRADAVERLLALLREALRPVRP
FT                   RRATRPTLGSQRRRVQRKVQHGETKRLRGRVRDD"
FT   misc_feature    complement(33919..34314)
FT                   /note="HMMPfam hit to PF00472, Peptidyl-tRNA hydrolase
FT                   domain"
FT   misc_feature    complement(34204..34254)
FT                   /note="ScanRegExp hit to PS00745, Prokaryotic-type class I
FT                   peptide chain release factors signature. Confirmed by
FT                   InterPro eMOTIF pattern match."
FT   CDS             34425..35057
FT                   /transl_table=11
FT                   /locus_tag="BP2659"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to many proteins of undefined function e.g.
FT                   Caulobacter crescentus hypothetical protein Cc3159 cc3159
FT                   TR:Q9A3P3 (EMBL:AE005980) (210 aa) fasta scores: E():
FT                   9.3e-59, 69.52% id in 210 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVJ8"
FT                   /protein_id="CAE42935.1"
FT                   /translation="MAYSVKELFKTLQGEGAQAGRAAVFCRFAGCNLWTGRESDRAGAA
FT                   CTFCDTDFVGTDGQGGGKFADAAGLADAIAACWGEHPADRYVVFTGGEPLLQLDEALLQ
FT                   AVHAQGFTVAIETNGTLPPPPGIDWICVSPKGRAPVVVERGHELKLVFPQADARPEAFA
FT                   HLAFEHFFLQPMDGPARAAHTTQAVQYCLDHPQWRLSLQTHKYIGIP"
FT   CDS             35086..35529
FT                   /transl_table=11
FT                   /locus_tag="BP2660"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Neisseria meningitidis hypothetical
FT                   protein Nma0704 nma0704 TR:Q9JVT6 (EMBL:AL162754) (140 aa)
FT                   fasta scores: E(): 6.6e-14, 36.8% id in 144 aa. Also
FT                   similar to several proposed tetrahydrobiopterin synthases
FT                   e.g. Neisseria meningitidis 6-pyruvoyl tetrahydrobiopterin
FT                   synthase, putative nmb0527 TR:Q9K0Q7 (EMBL:AE002408) (140
FT                   aa) fasta scores: E(): 4.8e-14, 36.8% id in 144 aa"
FT                   /db_xref="GOA:Q7VVJ7"
FT                   /db_xref="InterPro:IPR007115"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVJ7"
FT                   /protein_id="CAE42936.1"
FT                   /translation="MISVTRRLEFDAGHRIPDHNSQCRNLHGHRYVLEVTLSGDVVQAP
FT                   GASDNGMLMDFSEIKRIARAHIVDVWDHAFLVYEGDHAVRGFLDTLPDHKTVVLDRIPT
FT                   AENLASIIFATLAPHYHGHYGADLRLTRVRLYETPNCWADCGS"
FT   misc_feature    35086..35508
FT                   /note="HMMPfam hit to PF01242, 6-pyruvoyl tetrahydropterin
FT                   synthase"
FT   CDS             complement(35551..36642)
FT                   /transl_table=11
FT                   /locus_tag="BP2661"
FT                   /product="putative exported protein"
FT                   /note="Similar to many including: Agrobacterium tumefaciens
FT                   Agr_l_2908p agr_l_2908 TR:AAK90021 (EMBL:AE008345) (365 aa)
FT                   fasta scores: E(): 1.4e-67, 49.58% id in 363 aa and to
FT                   Rhizobium meliloti putative mannitol-binding periplasmic
FT                   signal peptide protein Smc04251 TR:CAC46500 (EMBL:AL591788)
FT                   (368 aa) fasta scores: E(): 1.7e-63, 47.26% id in 366 aa"
FT                   /db_xref="GOA:Q7VVJ6"
FT                   /db_xref="InterPro:IPR018389"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVJ6"
FT                   /protein_id="CAE42937.1"
FT                   /translation="MQRRRFLTAAAAGAGSAVLAAPAVAQEAPTIRWRMPSSFPRSLDT
FT                   VWGAAEAITARVSELTDGKFAIRAFPAGEIVPPLQVLDAVQNGTTECGHTAGFYYMGKE
FT                   PALVFDTGVPFGLTPRQHSAWVLQGGGQALIDELYAGFNAIAIPCGNTGAQMGGWFRKQ
FT                   MRTPDDFKGLRIRTPGLLSMVYQKLGAIPQQIAGSDIYPALEKGSLDAVEFVGPYDDEK
FT                   LGFAKVAQYYYGPGVMELGANLCLNVNRESWQSLPPRYQVALRAACAMAGEELLAKYDA
FT                   HNIPALKRLVGQGAKLQSWSPEIMAAMQKATREVLEEYAGKNPRFAKVLESWRAFRADQ
FT                   LLWASVNDGAAERYLLATRENGL"
FT   misc_feature    complement(36568..36642)
FT                   /note="Signal peptide predicted for BP2664 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.895) with cleavage site
FT                   probability 0.722 between residues 25 and 26"
FT   CDS             complement(36697..37497)
FT                   /transl_table=11
FT                   /locus_tag="BP2662"
FT                   /product="putative aldolase"
FT                   /note="Similar to several aldolases e.g.Pseudomonas
FT                   aeruginosa probable aldolase Pa0224 TR:Q9I6R4
FT                   (EMBL:AE004460) (260 aa) fasta scores: E(): 3.9e-55, 53.57%
FT                   id in 252 aa and Haemophilus influenzae L-fuculose
FT                   phosphate aldolase FucA or Hi0611 SW:FUCA_HAEIN (P44777)
FT                   (216 aa) fasta scores: E(): 3e-08, 26.7% id in 176 aa"
FT                   /db_xref="GOA:Q7VVJ5"
FT                   /db_xref="InterPro:IPR001303"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVJ5"
FT                   /protein_id="CAE42938.1"
FT                   /translation="MESMMSSSYTVQDKDVLRARVDREIESRVSEPQWTRAQKMALACR
FT                   MLAEQGHWHGGLAGQITERGDEPGTYWTLPFGVGADEARASELILIDEDLNPLDGKSLP
FT                   NPANRFHIWIYRHRPNVQCIVHTHPPAVSALSMVGEPLVVAHMDATPFYNDCAYLPQWP
FT                   GLPIGDNEGEVISAALGEKRAILLANHGLLTAGSSIEESAVMALWMEQAAMLQLRARAI
FT                   GPVKAVPGELAQESHDFLVKPKIQSLTFAYFARRVLRAAPDCLD"
FT   misc_feature    complement(36766..37389)
FT                   /note="HMMPfam hit to PF00596, Class II Aldolase and
FT                   Adducin N-terminal domain."
FT   CDS             37633..38253
FT                   /transl_table=11
FT                   /locus_tag="BP2663"
FT                   /product="putative transcriptional regulatory protein"
FT                   /note="Weakly similar to several e.g. Rhizobium loti
FT                   putative transcriptional regulator Mll2952 TR:Q98HA7
FT                   (EMBL:AP003000) (219 aa) fasta scores: E(): 1.4e-07, 28.2%
FT                   id in 195 aa"
FT                   /db_xref="GOA:Q7VVJ4"
FT                   /db_xref="HSSP:1B0N"
FT                   /db_xref="InterPro:IPR014710"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVJ4"
FT                   /protein_id="CAE42939.1"
FT                   /translation="MASCVLTHSPPPPMTAKSPPVPAPSPEQIGLRIRALRKRQKRTLA
FT                   WLSAQCGLDKGFLSRLERGEKSASVGTLHTVAGALGSSLSALLGEADPQTEIQIVRAAD
FT                   RHRMTTAPGPGEHIYEAITLGSSHSGLSVMVVEVGTHGAHTEAHHGGDELIFVLDGRIR
FT                   VHFGGHTVLLERDDSVRFPGYLPHSLSAEGRKLARALVVIASG"
FT   misc_feature    37729..37893
FT                   /note="HMMPfam hit to PF01381, Helix-turn-helix"
FT   misc_feature    37756..37821
FT                   /note="Predicted helix-turn-helix motif with score 1307
FT                   (+3.64 SD) at aa 42-63, sequence RTLAWLSAQCGLDKGFLSRLER"
FT   CDS             38393..38866
FT                   /transl_table=11
FT                   /locus_tag="BP2664"
FT                   /product="putative MarR-family transcriptional regulator"
FT                   /note="Similar to several MarR-family regulatory proteins
FT                   e.g. Escherichia coli transcriptional regulator SlyA
FT                   SW:SLYA_ECOLI (P55740) (146 aa) fasta scores: E(): 1.3e-07,
FT                   34.35% id in 131 aa and to Serratia sp. ATCC39006 global
FT                   regulator of antibiotic and pigment production, Rap
FT                   TR:Q9RA96 (EMBL:AF168597) (145 aa) fasta scores: E():
FT                   1.5e-07, 33.08% id in 136 aa"
FT                   /db_xref="GOA:Q7VVJ3"
FT                   /db_xref="InterPro:IPR000835"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVJ3"
FT                   /protein_id="CAE42940.1"
FT                   /translation="MKTATDNRLMAMTANLMVLSRAYRSAADKALADFGLSQATAWPVI
FT                   LTGRLGDGVRQGALAEALGVEGPSLVRVLDQLVAAGLIERREDPQDRRARTLHLTPAGQ
FT                   SLREQVENVLVQLRRQLFQGIADSDLETCLRVFDSLKSALGRESAAAREDYRP"
FT   misc_feature    38498..38812
FT                   /note="HMMPfam hit to PF01047, MarR family"
FT   misc_feature    38552..38617
FT                   /note="Predicted helix-turn-helix motif with score 1028
FT                   (+2.69 SD) at aa 54-75, sequence VRQGALAEALGVEGPSLVRVLD"
FT   misc_feature    38597..38701
FT                   /note="ScanRegExp hit to PS01117, Bacterial regulatory
FT                   proteins, marR family signature."
FT   CDS             38863..39924
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2665"
FT                   /product="putative membrane protein (pseudogene)"
FT                   /note="Pseudogene. This CDS is disrupted by the insertion
FT                   of IS481. Similar to several e.g. Pseudomonas aeruginosa
FT                   hypothetical protein Pa3305 TR:Q9HYT9 (EMBL:AE004753) (664
FT                   aa) fasta scores: E(): 1.5e-20, 31.83% id in 289 aa"
FT                   /db_xref="PSEUDO:CAE42941.1"
FT   misc_feature    join(38905..38973,39031..39084,39097..39165,39184..39237,
FT                   39265..39333)
FT                   /note="5 probable transmembrane helices predicted for
FT                   BP2665 by TMHMM2.0 at aa 15-37, 57-74, 79-101, 108-125 and
FT                   135-157"
FT   repeat_region   39904..39935
FT                   /rpt_type=INVERTED
FT                   /note="degenerate inverted repeat for IS481 element"
FT   repeat_region   39904..40956
FT   CDS             40006..40956
FT                   /transl_table=11
FT                   /locus_tag="BP2666"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTA3"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTA3"
FT                   /protein_id="CAE42942.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS"
FT   misc_feature    40264..40329
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   misc_feature    40387..40920
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   repeat_region   complement(40925..40956)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(40953..48614)
FT                   /transl_table=11
FT                   /gene="fhaS"
FT                   /locus_tag="BP2667"
FT                   /product="adhesin"
FT                   /note="Highly similar to Bordetella pertussis filamentous
FT                   hemagglutinin FhaB or BP1879 SW:FHAB_BORPE (P12255) (3591
FT                   aa) fasta scores: E(): 6.4e-175, 48.23% id in 2606 aa, and
FT                   to Bordetella bronchiseptica adhesin FhaB TR:Q9JP78
FT                   (EMBL:AF111796) (3634 aa) fasta scores: E(): 2.7e-173,
FT                   46.99% id in 2679 aa. The product of this CDS is also
FT                   similar to B. pertussis BP2907 E(): 9.8e-120 37.940%
FT                   identity in 2670 aa."
FT                   /db_xref="GOA:Q7VVJ2"
FT                   /db_xref="InterPro:IPR012334"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVJ2"
FT                   /protein_id="CAE42943.1"
FT                   /translation="MNAFSFRLVYSECRAMYVPVAPRRRAARRGRGGAGRRLRRALAAA
FT                   GAALACGAMAAPHRSPSGVPVIDIVAPDANGLSHNRLREFDVGPPGLVFNNSLTEGRSQ
FT                   LAGYLNRNPGLRQAATAILTEITGTRPSRLHGALEVFGRRADLIVANPNGLSVDGLVTL
FT                   NAGRLTLSTGRPVTEGGRLRLDVDAGHIAVAGAGVNTSGLDYFDLVARTVSLDGPVAAG
FT                   AGARAAALAVVAGRNRFEPANGSVTPLAGSAGSGGSGYAIDGTAAGAMYGARITLLSSD
FT                   SGVGVRQRGAVSSPGAITVSSRGEIRLREATAGAGHLAVDAGGAVAATALASGGAMRIA
FT                   GEGAVQVGTATSGDALSLHAGGALQAQRLRADGPLDARAQGALRVGAADSLAGISIDTA
FT                   RRAELGTLQSRGALSVRAGGEVALEAAKTDGALRVDGAGVTLGTGSAGQARIDSSAFVH
FT                   VGALAAVGAQAHGGGVEIHARDDVRVGEGRRGQGVAVRGDITIDATNGVLLLRNDVTAD
FT                   QGMVAASARAAVLEHASLRSGITPRARQARPDGGRPSVALRVQDVLFLNGTLRALDEAG
FT                   AVVPGRHIEVVDGWVRIADEIAETVHDEESVVSDAVIAARSGAVLVEAGTFVNFGGGVG
FT                   NGGKQGAGSDLTLRVRGDARNKGYISAGRRGELQVGAVLKNEFLIDSAGTQRIEAGRIE
FT                   NLGTIQSLGGEAGAQGLVIKAAESVAQAGVVAAERGVEISGRTEQRPVVAASARSSIAG
FT                   ERLLVQVASWDNRGSLALGQGGMRAEIAGRYAERGTASLDGEYAVSAQTIGIAGALRQG
FT                   RGATALVARQEMTLAGRLGLAGPVRLDAGGALSNTGMASACDRLAVTAASFDNAAGGLL
FT                   SAGSVDIAVRGAARNAGRLLSNQDIVLGAASFYNAAQAEARGNFAATVGAALENRGSLK
FT                   AGGDLTLRAARIDNHGVAAAGHDVGLRSPQLRNSGQVAAGHDIRIVEGRELRNPGRLDA
FT                   RNDIELAVDDYANTGSIHADGNATLALARGTDRDLVIDTPDILPVALGALRVKARSLRV
FT                   NTEIGVPGSLDVQTQGDIDNRQAIVAGGNLKLASASGALNNAAGALLWAGADMALRARR
FT                   ITNGKAALIESGGGMRLAARDTLINDLGSVRAGGDLRLDAARIENRATLTGHVRHAGEN
FT                   TVGGGGYGFWRGLAYLDYRLRYGNGAAVAAPFYDVALQAGQSRIESGGDLYVNRELGPG
FT                   RRGHLRNEGTIQAVGHAYIDGDVENRSLSREVSLADYLRTPLAAAIELKVTDSRAALTP
FT                   AYWSFRTLYELLDYLVGENRWETIWGFYDTYTDWATNTLKNLDLGYVSPPPPQAPPVPA
FT                   KPELSLPDGSADSPAARQALADYREALREYEAARAQARAAEAYGEAQRQVREILAARYG
FT                   ADRLAGLDTETAALDRVIGDYAAALARLGDDEPARAQALRKQYEQAVDRIQLAPATPGR
FT                   ALLARALSAALGADWRAQPHPVLVQRWNDFKAGRRGAPLTFYPQAQTVLAAGKGVTLSD
FT                   GYLRNGENAARNRGRPDTLRIGEHKVETSGGSFDALRGLGLETRLDIDGALEAVLANRH
FT                   LFARVGDQPAASSVAVPAAMPAPQGDADPAALRDVPRKPVAPAVALPQPLIETRIKYLD
FT                   QGGFYGSGYFFEQIGYQPDRATRVAGDNYFDTTLVREQVRRALGGYESRLPVRGDALVA
FT                   RLMESAGTVGKALGLKVGVAPTAQQLKLADRDFVWYVDTVIDGQKVLAPRLYLTEATRQ
FT                   GITDQYAGGGALIASGGDVTVNTDGHDVSSVNGLIQGRSVKVDAGKGKVVVADSKGAGG
FT                   GIEADDEVDVSGRDIGIEGGKLRGKDVRLKADTVKVATSMRYDGKGRLAARGDGALDAQ
FT                   GGQLHIEAKRLETAGATLKGGKVKLDVDDVKLGGVYEAASSYENRSSTPLGSLFAILSS
FT                   TTETSQSARANHYGTRIEAGTLEGKMQNLEIEGGSVDAAHTNLSVARDARFKAAADFAH
FT                   AEHEKEVRQLFLGGKVGAGGYEAGFSLGSESGVSSHAGRGAASSASARVGWESVWEKSA
FT                   SSRKTYRNADLRLGDGLLAVGGVLDFGGADINRDRYGGGAEGEPGLRLRGGEVRTTKYV
FT                   DTEHTVRSGGRVGLELGVDGSVNPQVTSSRLGRSLTQAGDGRGIDGGLMFGQALSTAFQ
FT                   SVMADTISSTLSASLRTEWWNESRNATSENLTHVGGNARIESGAGDMALAGVRFDGGRE
FT                   VDLRSAGALRMRSAESREQRTRDAHSLSLDARLAMGANLVKGDAYVRGTAGLSGHHEHA
FT                   ASERHTHGRTGVRAANVHLQAARDLVMQGARVQAAQGARVEVGGALSMASVQDVHDESH
FT                   TSADWMAAAGAHASTGNGFKPQPVAQVGVSFSHGHDRGAIVAQRTGIAAGGPLSVRVAG
FT                   DAQLIGADLVSTAGQGRVQVGGRVRAEQLADRRDRDGGSAGVSAPALLSTSTRPTLVVS
FT                   GGRLERDHYDAVHRSVIAVSPGGLAAADGVSGHLQRDPVTGLRVLRDEHWAGGDMAFTL
FT                   GSVPKFDRGKYAPPRPDTSAPGGSPFSLHR"
FT   misc_feature    complement(48450..48614)
FT                   /note="Signal peptide predicted for BP2667 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.757) with cleavage site
FT                   probability 0.750 between residues 55 and 56"
FT   CDS             complement(48855..52901)
FT                   /transl_table=11
FT                   /gene="purL"
FT                   /locus_tag="BP2668"
FT                   /product="phosphoribosylformylglycinamidine synthase"
FT                   /EC_number="6.3.5.3"
FT                   /note="Highly similar to many Prokaryotic and Eukaryotic
FT                   phosphoribosylformylglycinamidine synthases involved in the
FT                   de novo purine biosynthesis including: Neisseria
FT                   meningitidis PurL or Nmb1996 SW:PUR4_NEIMB (Q9JXK5) (1320
FT                   aa) fasta scores: E(): 6.6e-119, 54.9% id in 1355 aa and
FT                   Schizosaccharomyces pombe probable
FT                   phosphoribosylformylglycinamidine synthase Spac6f12.10C
FT                   SW:PUR4_SCHPO (O14228) (1323 aa) fasta scores: E():
FT                   7.1e-146, 46.88% id in 1380 aa"
FT                   /db_xref="GOA:Q7VVJ1"
FT                   /db_xref="InterPro:IPR010918"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVJ1"
FT                   /protein_id="CAE42944.1"
FT                   /translation="MSLVQHLPGSSVLSAFRRERLLAQLKKAGLPVADISARYEHFIHT
FT                   DSALPAEQQARLAQLLDYGTPAAETPAKSLELLVIPRLGTMSPWASKATDIAHNCGLDA
FT                   VRRIERGVRYALTPERGLLGAKSFDADMLARAADCLHDRMTETVVDGAFDGQALFETLA
FT                   GKPMRTVAVQAEGRAALEQANVALGLALSEDEIDYLAQSFGDLGRDPTDVELMMFAQAN
FT                   SEHCRHKIFNAQWVIDGQEQSNTLFGMIRATHKAQPAGTVVAYSDNAAIMEGGPAQRFQ
FT                   AGVPGVAGEGAQAARYVRRDTTVHTLMKVETHNHPTAIAPFPGAATGAGGEIRDEGATG
FT                   RGSKPKAGLTGFTVSHLRFDDALQPWENDHHGLPERIASPLSIMIDGPIGGAAFNNEFG
FT                   RSNLLGYFRAFEQTAGGTRWGYHKPIMIAGGLGSIDAGLTHKEVIPPGALLIQLGGPGL
FT                   RIGMGGGAASSISMGSNSAELDFDSVQRGNPELERRAQEVIDRCWQQGERNPIVAIHDV
FT                   GAGGLSNAFPELVNDAGRGAIFDLKRVPLEESGMSPAEIWSNESQERYVLSILPQDLER
FT                   FDAIARRERCPYAVVGVATEERQLRVVDGEGLPGLDTIRAQGENEVRPVDVPIDVILGK
FT                   PPRMTRDVQRLPGVSEPLDLAGLDLTEAAYRVLRHPTVANKSFLITIGDRTVGGLSSRD
FT                   QMVGPWQVPVADCAVTLADFEGTRGEAMSMGERTPLAMLDAPASGRMAVAEALTNLAAA
FT                   DVARLEDIKLSANWMAACGVPGQDAALYDTVSAVSELCQSVGLSIPVGKDSLSMKTSWD
FT                   EVGEQRQVVAPVSLVVTAFAPVGDVRASLTPQLRTDAGDTVLILIDLGRGRHRMAGSIL
FT                   AQAYNQVGETVPDIDAPQDLRAFFVTIRTLAEAGTILAYHDRSDGGLFATLAEMAFAGR
FT                   TGVSVNLDMLTFDPQSADWGDYKIRPEQVAVQREELTLKALFSEEAGAVIQVPASQRDA
FT                   VMQVLRGAGLSAHSHVIGGLNGADEVEFYRDGRKVWSQPRADLGRAWSEVSYRIMARRD
FT                   NPACAQAELDVWNDAKDPGLAPRVAFDPQEDVAAPFIGTGKRPRVAILREQGCNSQVEM
FT                   GWAFDTAGFEAIDVHMTDLLSGRIDLAGMQGLVAVGGFSYGDVLGAGEGWARTIRYNDK
FT                   LSDQFAAYFARPDTFALGVCNGCQMMAALAPMIPGAEHWPRFTRNQSEKYEARLSLVEV
FT                   TASPSIFFAGMEGARIPVAVAHGEGYADFSQQGDAARALMAVRYIDNHGAATETYPFNP
FT                   NGSPGGLTAVTTADGRFTVMMPHPERVTRNVMMSWAPAQWGERDAGGAFSPWMRIFRNA
FT                   RVWLK"
FT   misc_feature    complement(51114..52112)
FT                   /note="HMMPfam hit to PF00586, AIR synthase related
FT                   protein, N-terminal domain"
FT   CDS             53214..53795
FT                   /transl_table=11
FT                   /locus_tag="BP2669"
FT                   /product="putative integral membrane protein"
FT                   /note="Similar in parts to several e.g. Escherichia coli
FT                   hypothetical protein YiaM B3577 SW:YIAM_ECOLI (P37674) (157
FT                   aa) fasta scores: E(): 3.5e-07, 34.05% id in 138 aa"
FT                   /db_xref="InterPro:IPR007387"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVJ0"
FT                   /protein_id="CAE42945.1"
FT                   /translation="MQPLILPALCSTLLPMHRPDASDEPVEPIIPPEADPAVKVPLALE
FT                   DWLAVILLAALAIITFLNVLVRYLTDQSFAWTEEISVFLLIVLTMVGASMAFVRNHHIR
FT                   IEILADNGSPRRQYLMALTAHSLVVFFFALLTVLSARLVYDEFRYEETSPAIGVPTWWY
FT                   SIWMPLLAAVITLRVAGAARRLIARHKAET"
FT   misc_feature    join(53352..53420,53448..53516,53577..53645,53688..53756)
FT                   /note="4 probable transmembrane helices predicted for
FT                   BP2669 by TMHMM2.0 at aa 47-69, 79-101, 122-144 and
FT                   159-181"
FT   CDS             53792..55090
FT                   /transl_table=11
FT                   /locus_tag="BP2670"
FT                   /product="putative membrane permease"
FT                   /note="Similar to many including: Rhizobium meliloti
FT                   putative c4-dicarboxylate transport system, permease
FT                   Smb21436 TR:CAC49665 (EMBL:AL603646) (426 aa) fasta scores:
FT                   E(): 6.6e-47, 37.76% id in 421 aa and Rhizobium meliloti
FT                   conserved hypothetical DedA-like protein Sma0250
FT                   TR:AAK64791 (EMBL:AE007207) (425 aa) fasta scores: E():
FT                   7.6e-45, 38.39% id in 435 aa"
FT                   /db_xref="GOA:Q7VVI9"
FT                   /db_xref="InterPro:IPR004681"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVI9"
FT                   /protein_id="CAE42946.1"
FT                   /translation="MIAALLFAVFITLMLIGVPVGVALGLGGTVAIVLSNLDVSWFGLL
FT                   AVPQNFYAGLAKYPLLAIPMFVLVGSIFDRSGVARRLVDFAVALVGRGPGMLPLVSIAV
FT                   AMFLGGISGSGPACAAAVGAVMIAAMSRAGYPAPYSAAVVAAGAATDILIPPSVAFIIY
FT                   SVLVPGASVPALFAAGMVPGILAGFALIIPAVWLARHHSMGAREAHLPRPPLWASLREA
FT                   SWGLAAPVLILGSMRMGWFTPTEAAVVAVFYGLFVGMCIHRTIKVRDLFVILREAAELS
FT                   AVIMLVVTLAGIFAWALSTLSVIDPITHAIVNSGLGEWGVLALLIMLLMTVGMFLDGIS
FT                   IFLIFVPLLMPIANAYGWDPVWFGVILTLKVALGQFTPPLAVNLMVSCRIARVPMESTV
FT                   GWVVWLLGGMFLVLVAVLIFPQLALWLPHRLGY"
FT   misc_feature    join(53804..53872,53942..54010,54113..54181,54224..54292,
FT                   54311..54379,54506..54574,54635..54703,54746..54799,
FT                   54812..54865,54875..54943,54980..55048)
FT                   /note="11 probable transmembrane helices predicted for
FT                   BP2670 by TMHMM2.0 at aa 5-27, 51-73, 108-130, 145-167,
FT                   174-196, 239-261, 282-304, 319-336, 341-358, 362-384 and
FT                   397-419"
FT   misc_feature    54197..54676
FT                   /note="HMMPfam hit to PF00597, DedA family"
FT   CDS             55170..56198
FT                   /transl_table=11
FT                   /locus_tag="BP2671"
FT                   /product="putative exported protein"
FT                   /note="Similar to Rhizobium meliloti putative periplasmic
FT                   binding protein Smc00271 TR:CAC46278 (EMBL:AL591788) (325
FT                   aa) fasta scores: E(): 1.2e-29, 34.74% id in 331 aa"
FT                   /db_xref="GOA:Q7VVI8"
FT                   /db_xref="InterPro:IPR018389"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVI8"
FT                   /protein_id="CAE42947.1"
FT                   /translation="MKFRNIVGAALCAAFALGVAPAQAQNYKSEYKLSIVVGTTFPWGQ
FT                   GAVIWSDLVRERTEGRINIKVYPGTSLVQGDQTREFTAIRQGVIDMAVSSTINWSPQVK
FT                   QLNLFSLPFLMPDYAAIDALVQGEVGKEVFKLIEKAGVVPLAWGENGYRQLSNSKHEIK
FT                   TPADMKGLKLRVVGSPLYIDTFTALGANPTQMSWADAQPALASGAVNGQENPLSIYTGS
FT                   KLYTVGQKYLTLWNYVADPLIYVVNREVWNSWSEKDREIVRQAALDAGKQQIVIARKGV
FT                   TPEDPSLLKEIAGHGVTVSSLDAGQHAEFVAATKPVYEKWKKQIGAELVDLAEKSIAAR
FT                   KK"
FT   misc_feature    55170..55241
FT                   /note="Signal peptide predicted for BP2671 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.994 between residues 24 and 25"
FT   repeat_region   56357..56388
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   56357..57409
FT   CDS             56459..57409
FT                   /transl_table=11
FT                   /locus_tag="BP2672"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTA0"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTA0"
FT                   /protein_id="CAE42948.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT"
FT   misc_feature    56717..56782
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   misc_feature    56840..57373
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   repeat_region   complement(57378..57409)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS1002 element"
FT   CDS             complement(57406..58356)
FT                   /transl_table=11
FT                   /locus_tag="BP2673"
FT                   /product="transposase"
FT                   /note="transposase for IS1002 element"
FT                   /db_xref="GOA:Q7TT95"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TT95"
FT                   /protein_id="CAE42949.1"
FT                   /translation="MNNHKHARLTRLGRALLVNRVMQQNWTMRQASQAAGVSLRTGYKW
FT                   LARFRSEGLDGLLDRSSRPHRSPKACAPEQVEHFAQQRRQRLPLWRIAREAGRSLATVA
FT                   RYMERIGLSRLASLEPPAPVRRYERASPGELLHIDTKRLGRIRGVGHRITGDRAQNRNR
FT                   GIGWDAVHLAIDDFSRVSFARILDDEGGDQCAEFLRQATAYYASLGVRIDRVMTDNGSG
FT                   YVSRTFRAVCVELGIRHIRTRPYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQ
FT                   PFIDRYNWCRPHSALGHQPPITRIPDVNNLLRIDS"
FT   repeat_region   57406..57434
FT                   /note="Inverted repeat for IS481-like element encoding
FT                   BP2673"
FT   repeat_region   complement(57406..58446)
FT                   /note="IS1002-like element"
FT   misc_feature    complement(57451..57975)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   misc_feature    complement(58216..58281)
FT                   /note="Predicted helix-turn-helix motif with score 1627
FT                   (+4.73 SD) at aa 26-47, sequence WTMRQASQAAGVSLRTGYKWLA"
FT   repeat_region   complement(58418..58446)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS1002 element"
FT   CDS             58673..59278
FT                   /transl_table=11
FT                   /gene="fimX"
FT                   /locus_tag="BP2674"
FT                   /product="fimbrial protein"
FT                   /note="Previously sequenced as B. pertussis fimbrial
FT                   protein FimX precursor SW:FMFX_BORPE (P09808) (201 aa)
FT                   fasta scores: E(): 9.5e-77, 99% id in 201 aa. Also similar
FT                   to many other Bordetella fimbrial proteins including:
FT                   Bordetella bronchiseptica fimbrial subunit precursor Fim2
FT                   TR:Q44885 (EMBL:X74119) (208 aa) fasta scores: E():
FT                   6.7e-38, 59.11% id in 203 aa and Bordetella parapertussis
FT                   putative major fimbrial structural subunit FimA TR:O54541
FT                   (EMBL:AF022306) (201 aa) fasta scores: E(): 1.5e-22, 43.16%
FT                   id in 183 aa"
FT                   /db_xref="GOA:P09808"
FT                   /db_xref="InterPro:IPR014779"
FT                   /db_xref="UniProtKB/Swiss-Prot:P09808"
FT                   /protein_id="CAE42950.1"
FT                   /translation="MQAKTFLLGAALAGVALAAHAEDGTIVITGTITDQTCTIEDPSPG
FT                   YIKVVHLPTISKSALKNAGDVAGRTRFDIKLKDCPTTVNTLKLYFEPGPTTDYGTKDLK
FT                   AYKQAWYVDAATLLKSPPSVTEAKGVQIRLMNLNGKQIPMGETEPNQHAAAFSGTMQAG
FT                   QAKKSFTLHYLAGYVKKASGEVEATMLTTYVGFSVVYP"
FT   misc_feature    58673..58735
FT                   /note="Signal peptide predicted for BP2674 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.999 between residues 20 and 21"
FT   misc_feature    58742..59275
FT                   /note="HMMPfam hit to PF00419, Fimbrial protein"
FT   CDS             complement(59332..60645)
FT                   /transl_table=11
FT                   /gene="paaK"
FT                   /locus_tag="BP2675"
FT                   /product="phenylacetate-coenzyme A ligase"
FT                   /EC_number="6.2.1.30"
FT                   /note="Similar to Escherichia coli phenylacetate-coenzyme A
FT                   ligase PaaK or B1398 SW:PAAK_ECOLI (P76085) (437 aa) fasta
FT                   scores: E(): 2e-112, 65.5% id in 432 aa"
FT                   /db_xref="GOA:Q7VVI7"
FT                   /db_xref="InterPro:IPR011880"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVI7"
FT                   /protein_id="CAE42951.1"
FT                   /translation="MSTTMSKPGLDPIEHASRDEIAALQLERLKWTLSHAYQNVPHYKK
FT                   AFDAAGVHPEDLQQLSDIARFPFTTKQDLRDNYPFGMFAVPRERVSRVHASSGTTGKPT
FT                   VVGYTARDLDNWANLVARSIRAAGGKPGDIVHVSYGYGLFTGGLGAHYGAERLGCTVVP
FT                   MSGGQTEKQVQLINDFRPDIIMVTPSYYCNILEEQRRQGMDPRQSSLRIGIFGAEPWTG
FT                   QMRADIEAEGGIDAVDIYGLSEVMGPGVASECVETKDGPVVWEDHFYAEIVNPDTGEPV
FT                   ADGEPGELVFTSLTKEAMPIIRYRTRDLTRLLPPTSRSMRRIGKITGRSDDMLIVRGVN
FT                   LFPTQVEELVLKIAQLAPHYQLVLSRSGNLDELEILTEVRAEFSTLTEAERAGLGKQLQ
FT                   HAVKSYIGVSARVQVADTGFVERTLTGKARRVIDKRPR"
FT   misc_feature    complement(59572..60609)
FT                   /note="HMMPfam hit to PF00501, AMP-binding enzyme"
FT   CDS             complement(60720..61190)
FT                   /transl_table=11
FT                   /gene="paaI"
FT                   /locus_tag="BP2676"
FT                   /product="phenylacetic acid degradation protein"
FT                   /note="Similar to Escherichia coli phenylacetic acid
FT                   degradation protein PaaI B1396 SW:PAAI_ECOLI (P76084) (140
FT                   aa) fasta scores: E(): 4.5e-25, 51.56% id in 128 aa"
FT                   /db_xref="InterPro:IPR006683"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVI6"
FT                   /protein_id="CAE42952.1"
FT                   /translation="MNAHVPAVDVPSDPHELARAVGATMYAGDAASQGLGMTVVEIAPG
FT                   YAKLSMPVRADMLNGHKTCHGGFIFALADSAFAFSCNSRNVSTVASGCTIDYLAPGLEG
FT                   DVLTAVAQERSLAGRTGIYDVTVTNQQGRSVAVFRGRSYRIRGQVVGEPPQD"
FT   misc_feature    complement(60756..61118)
FT                   /note="HMMPfam hit to PF02584, Uncharacterized protein
FT                   PaaI, COG2050"
FT   CDS             complement(61190..61978)
FT                   /transl_table=11
FT                   /gene="paaG"
FT                   /locus_tag="BP2677"
FT                   /product="probable enoyl-CoA hydratase"
FT                   /EC_number="4.2.1.17"
FT                   /note="Similar to Escherichia coli probable enoyl-CoA
FT                   hydratase PaaG B1394 SW:PAAG_ECOLI (P77467) (262 aa) fasta
FT                   scores: E(): 1.3e-55, 60.07% id in 258 aa"
FT                   /db_xref="GOA:Q7VVI5"
FT                   /db_xref="HSSP:1EY3"
FT                   /db_xref="InterPro:IPR011968"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVI5"
FT                   /protein_id="CAE42953.1"
FT                   /translation="MTYQDILFELAGGVARLTLNRPDKLNSFTARMHCEVADALGRIER
FT                   EGARVLVLTGAGRGFCAGQDLSERRPTADGAPLDLGETVEKFYGPLVRRLAALPLPVVV
FT                   GVNGVAAGAGANLALAGDIVIARESASFIQSFCRLGLIPDTGGTFALPRLVGRARAAGL
FT                   ALLGNKLSARQAQDWGLIWQCVADDEFDSALDGLAAHFAQAPTKGLAFTKRALQASLGN
FT                   DLSTQLDLERDMMRELGRSADYAEGVAAFLDKREPQFKGK"
FT   misc_feature    complement(61421..61936)
FT                   /note="HMMPfam hit to PF00378, Enoyl-CoA
FT                   hydratase/isomerase family"
FT   CDS             complement(61989..63641)
FT                   /transl_table=11
FT                   /locus_tag="BP2678"
FT                   /product="putative oxidoreductase"
FT                   /note="Similar to Streptomyces coelicolor putative
FT                   dehydrogenase Sch69.05 TR:Q9XA29 (EMBL:AL079308) (563 aa)
FT                   fasta scores: E(): 4.9e-114, 56.81% id in 558 aa and to
FT                   Azoarcus evansii PaaZ TR:Q9F9V2 (EMBL:AF176259) (562 aa)
FT                   fasta scores: E(): 6.2e-112, 56.44% id in 551 aa"
FT                   /db_xref="GOA:Q7VVI4"
FT                   /db_xref="InterPro:IPR016162"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVI4"
FT                   /protein_id="CAE42954.1"
FT                   /translation="MSQDFFERHQPMLQKALEAAAQRGYWSPFPESPSPRNYGETAAQD
FT                   GQAAFEALRGKPFALDLPQASGAVGGEVSPFGFELGITYPQVAPEALVAASSKALEQWR
FT                   RAGPRAWVGVSLEILQRLNRRSFEMAHAVQHTTGQAFQAGGPHAQDRGVEAVTYAWQEM
FT                   SRIPGVALWEKPQGKHDPIKMEKRFTVVPRGIALVIGCSTFPTWNGYPGLFASLATGNT
FT                   VIVKPHPGAILPLALTVQVAREVLGEAGFDPDVVLLAAHPAGDDTAQRLALDPAVRIVD
FT                   FTGSSANGNWLEQNARQALVYTEKAGVNQVLIDSTDDLKGVARNLAFSLALYSGQMCTA
FT                   PQNIYVPRDGIQTAEGRVGFDEVAAALGAALDKLAGDPAKAVELTGAVQNDATVARIGK
FT                   ARQLGLPVLADSKALAHPQFEQARVHTPLLLRADAGNDALGQEWFGPIAFVVATDSTAH
FT                   SIELAGASVRQHGALSLSAYTTDEAVASRVQDMAEHSGVSLSLNLTGGVFVNQTAAFSD
FT                   FHGTGANPAANAALSDSAFVANRFRVVQTRRHV"
FT   misc_feature    complement(62004..63407)
FT                   /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase
FT                   family"
FT   CDS             complement(63729..64679)
FT                   /transl_table=11
FT                   /locus_tag="BP2679"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTA4"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTA4"
FT                   /protein_id="CAE42955.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS"
FT   repeat_region   63729..63760
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   complement(63729..64780)
FT   misc_feature    complement(63765..64298)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   misc_feature    complement(64356..64421)
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   repeat_region   complement(64750..64780)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(64777..65829)
FT                   /pseudo
FT                   /transl_table=11
FT                   /gene="paaE'"
FT                   /locus_tag="BP2680"
FT                   /product="probable phenylacetic acid degradation NADH
FT                   oxidoreductase (pseudogene)"
FT                   /note="Pseudogene. This CDS has been disrupted by the
FT                   insertion of an IS481 element. The insertion occurred near
FT                   the C-terminus (following codon 351), replacing the 11
FT                   C-terminal amino acids with 36 aa encoded within the IS481
FT                   element. It is not clear whether this insertion affects the
FT                   function of the protein. Similar to Escherichia coli
FT                   probable phenylacetic acid degradation NADH oxidoreductase
FT                   PaaE or B1392 SW:PAAE_ECOLI (P76081) (356 aa) fasta scores:
FT                   E(): 2.7e-56, 44.57% id in 350 aa."
FT   misc_feature    complement(64777..65016)
FT                   /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster
FT                   binding domain"
FT   misc_feature    complement(64885..64911)
FT                   /note="ScanRegExp hit to PS00197, 2Fe-2S ferredoxins,
FT                   iron-sulfur binding region signature."
FT   misc_feature    complement(65140..65490)
FT                   /note="HMMPfam hit to PF00175, Oxidoreductase NAD-binding
FT                   domain"
FT   CDS             complement(65841..66347)
FT                   /transl_table=11
FT                   /gene="paaD"
FT                   /locus_tag="BP2681"
FT                   /product="phenylacetic acid degradation protein"
FT                   /note="Similar to Escherichia coli phenylacetic acid
FT                   degradation protein PaaD B1391 SW:PAAD_ECOLI (P76080) (167
FT                   aa) fasta scores: E(): 9.2e-28, 47.56% id in 164 aa"
FT                   /db_xref="InterPro:IPR011883"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVI3"
FT                   /protein_id="CAE42957.1"
FT                   /translation="MNALPRVPAGQVLAWLESVPDPEIPVLSVVDLGVVRDIGWDGDTC
FT                   VVTITPTYSGCPAMREITHDIETTLAGHGLASVRIETRLAPAWTTDWMTARGRAALRQY
FT                   GIAAPVERAVDISGISRRRAAPAIECPHCGSLDTRLISHFGSTSCKALYRCVACREPFD
FT                   YFKPH"
FT   misc_feature    complement(66051..66332)
FT                   /note="HMMPfam hit to PF01883, Domain of unknown function
FT                   DUF59"
FT   CDS             complement(66344..67108)
FT                   /transl_table=11
FT                   /gene="paaC"
FT                   /locus_tag="BP2682"
FT                   /product="phenylacetic acid degradation protein"
FT                   /note="Similar to Escherichia coli phenylacetic acid
FT                   degradation protein PaaC or B1390 SW:PAAC_ECOLI (P76079)
FT                   (248 aa) fasta scores: E(): 1.4e-49, 54.58% id in 251 aa"
FT                   /db_xref="GOA:Q7VVI2"
FT                   /db_xref="HSSP:1OTK"
FT                   /db_xref="InterPro:IPR011882"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVI2"
FT                   /protein_id="CAE42958.1"
FT                   /translation="MDKSLFEYLLRLGDTTLVLSQRLGQWCGHGPVLEEDLALTNTALD
FT                   LLGQARMWLTLAGEVEGAGRDEDRLAYLRDAPQFRNLLLVERPNGHYGDTMARQFLFDT
FT                   WHYFLLIRLARSADERVAAIAAKALKEVTYHARRSADLVVRLGDGTALSHARMQAAIDA
FT                   AWPYVGEMFVDDAIDQDLAARGIACELSSLRDEWLAQVREVLDEATLAMPQEDEAFHPA
FT                   HRGGRQGRHTEHLGYILAEMQHLQRAYPGASW"
FT   CDS             complement(67124..67408)
FT                   /transl_table=11
FT                   /gene="paaB"
FT                   /locus_tag="BP2683"
FT                   /product="phenylacetic acid degradation protein"
FT                   /note="Similar to Escherichia coli phenylacetic acid
FT                   degradation protein PaaB or B1389 SW:PAAB_ECOLI (P76078)
FT                   (95 aa) fasta scores: E(): 1.1e-23, 63.33% id in 90 aa"
FT                   /db_xref="InterPro:IPR009359"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVI1"
FT                   /protein_id="CAE42959.1"
FT                   /translation="MSKDWPLWEVFIRSQHGLAHKHVGSLHAPDTEMAINHARDVYTRR
FT                   NEGLSIWVVRAADIVASSPGDKEPLFEPANSKVYRHPTFFPMPDEIKHM"
FT   CDS             complement(67473..68462)
FT                   /transl_table=11
FT                   /gene="paaA"
FT                   /locus_tag="BP2684"
FT                   /product="phenylacetic acid degradation protein"
FT                   /note="Similar to Escherichia coli phenylacetic acid
FT                   degradation protein PaaA or B1388 SW:PAAA_ECOLI (P76077)
FT                   (309 aa) fasta scores: E(): 7.9e-93, 70.03% id in 307 aa.
FT                   However more similar in length to Rhizobium meliloti
FT                   putative phenylacetic acid degradation protein TR:CAC49959
FT                   (EMBL:AL603647) (332 aa) fasta scores: E(): 2.8e-106,
FT                   74.84% id in 326 aa"
FT                   /db_xref="GOA:Q7VVI0"
FT                   /db_xref="InterPro:IPR011881"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVI0"
FT                   /protein_id="CAE42960.1"
FT                   /translation="MYAQLVETGVGKVKHVDQLEGPEQAFQRRIDDGVRIEPKDWMPEA
FT                   YRKTLVRQISQHAHSEIVGMLPEGNWITRAPSLKRKAILLAKVQDEAGHGLYLYSAAET
FT                   LGVSREDLIDDLHTGRAKYSSIFNYPTLTWADIGMIGWLVDGSAIINQIPLCRCSYGPY
FT                   ARAMVRVCKEESFHQRQGYDLLIQMCLHGTPEQKAMCQEAFNRWWWPALMMFGPSDADS
FT                   PNSAQSMQWKIKLFSNDELRQKMVDQTVPQAEYLGLTVPDPDLKWNAERGHYDFGAIDW
FT                   DEFYAVIKGHGPCNRERLAARVKAHEDGAWVREAMAAHADKQARRKAA"
FT   CDS             68634..69563
FT                   /transl_table=11
FT                   /gene="paaX"
FT                   /locus_tag="BP2685"
FT                   /product="phenylacetic acid degradation operon negative
FT                   regulatory protein"
FT                   /note="Similar to Escherichia coli phenylacetic acid
FT                   degradation operon negative regulatory protein paaX or
FT                   B1399 SW:PAAX_ECOLI (P76086) (316 aa) fasta scores: E():
FT                   1.3e-34, 35.94% id in 306 aa"
FT                   /db_xref="InterPro:IPR012906"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVH9"
FT                   /protein_id="CAE42961.1"
FT                   /translation="MASTPSPLDRFLSRLLKNDPPRAKSLCVSLLGDALAPHGGAIWLG
FT                   DLIELLAPIGINERLLRTSVFRLVAQGWLQSERHGRRSLYLLSEHGLRHTAHASQRIYD
FT                   GPARAWNGEWTLVALPRAGNNGLAERGELRRELLWEGFGMVAPGLFAHPQTEARAAHDI
FT                   LEKLGIPDKALVLSARDQAGAGGLPIASLAGQCWNLDEVADQYRLFSRNFGPVEKLLDP
FT                   PPTPAQAFAVRVLLLHNWQRIVLHDPQLPTPMEPDGWPGNAARALCRRIYWQVFDASER
FT                   HLDAVAGRENARYRPAQADIMGRFGGRP"
FT   CDS             complement(69535..70221)
FT                   /transl_table=11
FT                   /locus_tag="BP2686"
FT                   /product="hypothetical protein"
FT                   /note="Similar to N-terminus of many proteins of undefined
FT                   function e.g. Xylella fastidiosa hypothetical protein
FT                   Xf0757 xf0757 TR:Q9PFC1 (EMBL:AE003917) (473 aa) fasta
FT                   scores: E(): 9e-18, 46.79% id in 203 aa. Also similar over
FT                   the entire length to Schizosaccharomyces pombe hypothetical
FT                   26.5 kDa protein C15a10.05c in chromosome I SW:YDO5_SCHPO
FT                   () (242 aa) fasta scores: E(): 0.0004, 28.64% id in 185 aa"
FT                   /db_xref="InterPro:IPR004443"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVH8"
FT                   /protein_id="CAE42962.1"
FT                   /translation="MDIERVEQVRAVERLAHRRGLALMPRAGLAAADFVAARLPAGAQV
FT                   LALAGPGNNGGDALVAATLLQARGYRVAVVMPAGPARLPDDARRAWQDWCAAGGQASAD
FT                   LPAHAPALVIDGLFGIGLARPLDGAWQGLIDQVNAWRVPVLALDVPSGLSAASGQPLGD
FT                   PPGRPVRATWTLSFIGVPAALRAPGAAAWCGEQYLSLLGLTPAFLAEAVGPCGQATATA
FT                   ARRSGP"
FT   CDS             complement(70255..70800)
FT                   /transl_table=11
FT                   /locus_tag="BP2687"
FT                   /product="oligoribonuclease"
FT                   /note="Similar to Escherichia coli oligoribonuclease
FT                   SW:ORN_ECOLI () (180 aa) fasta scores: E(): 2.8e-45, 61.66%
FT                   id in 180 aa"
FT                   /db_xref="GOA:Q7VVH7"
FT                   /db_xref="InterPro:IPR006055"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VVH7"
FT                   /protein_id="CAE42963.1"
FT                   /translation="MAANENRLVWLDMEMTGLDPEKERIIEVAVVVTEADLTVVAEGPV
FT                   LVVHQPDSLLDAMDNWNKSTHGKSGLIEKVKASTLGEAQAEQILLEFLAEHVPAGKSPL
FT                   CGNTISQDRRFMYAYMPNLERFFHYRNLDVSTLKELARRWAPAVYKGFDKKSRHEALAD
FT                   IYESIDELKYYREHLLKV"
FT   misc_feature    complement(70264..70779)
FT                   /note="HMMPfam hit to PF00929, Exonuclease"
FT   CDS             70845..72110
FT                   /transl_table=11
FT                   /locus_tag="BP2688"
FT                   /product="putative integral membrane zinc-metalloprotease"
FT                   /note="Similar to many putative metalloproteases e.g.
FT                   Campylobacter jejuni putative integral membrane
FT                   zinc-metalloprotease Cj0723C TR:Q9PPI4 (EMBL:AL139076) (395
FT                   aa) fasta scores: E(): 1.4e-38, 33.07% id in 393 aa"
FT                   /db_xref="GOA:Q7VVH6"
FT                   /db_xref="InterPro:IPR001915"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVH6"
FT                   /protein_id="CAE42964.1"
FT                   /translation="MTAPVPLFTLFFVVLLLADIGVRLWLATRQIRHVAANRQSVPPEF
FT                   APRIGLHSHQRAADYTVARVRLGMLERVYDAAILVALTLLGGLQFIDLWLGQLTQHDFL
FT                   RQLLLLACVPLLLGLLGLPFTLWRQFRLEGRFGFNRMTPALFFSDAVKGVLVALVLGLP
FT                   LAAAVLWLMAGAGAYWWLWAWGLWLGYNLLLLLIYPTFIAPLFNKFTPLNDPELAGRIR
FT                   QLAQRCGFALNGLFVMDGSRRSAHGNAYFTGFGKSRRIVFFDTLLARLNGDEIEAVLAH
FT                   ELGHFARRHIIKRLALSFAGALVFFAALGWLARQPWFYEGLGVLPNLGGRNDAMALVLF
FT                   FLVVPVFTFMLTPLASWYSRRDEFEADRYAAAQSSPDRLVSALVKLYDDNAATLTPDPV
FT                   HSAFYDSHPPAAVRIRHLMAGA"
FT   misc_feature    join(70857..70925,71070..71138,71166..71234,71295..71363,
FT                   71391..71459,71727..71795,71853..71921)
FT                   /note="7 probable transmembrane helices predicted for
FT                   BP2688 by TMHMM2.0 at aa 5-27, 76-98, 108-130, 151-173,
FT                   183-205, 295-317 and 337-359"
FT   misc_feature    71502..72095
FT                   /note="HMMPfam hit to PF01435, Peptidase family M48"
FT   CDS             72107..73009
FT                   /transl_table=11
FT                   /locus_tag="BP2689"
FT                   /product="putative ATP/GTP-binding protein"
FT                   /note="weakly imilar to many proteins of undefined function
FT                   e.g. Bacillus halodurans Bh2503 protein bh2503 TR:Q9K9Z1
FT                   (EMBL:AP001515) (294 aa) fasta scores: E(): 1.1e-21, 33.33%
FT                   id in 294 aa"
FT                   /db_xref="GOA:P67678"
FT                   /db_xref="InterPro:IPR004881"
FT                   /db_xref="UniProtKB/Swiss-Prot:P67678"
FT                   /protein_id="CAE42965.1"
FT                   /translation="MSSNQAEGLIIAAHGRHYTVELADGSLRQCFPRGKKNGPAVGDRV
FT                   RITPQGRDEGAIEAVLPRRNLLFRSDEMRVKQFAANVDQLLIVVAVEPTFADDLTGRSL
FT                   AGAWSADIEPVIVLNKIDLPNGLDAARARLEPLRRLGVPVIELSAQDHAMVHERLAPRL
FT                   AGRTSLLLGQSGMGKSTLLNTLVPHAQAATREYSAALDMGRHTTTSTRLYHLPEPGGDL
FT                   IDSPGFQAFGLQHLNGEQILRGFPEFAPHIEHCRFYNCTHRHEPGCGVLAALQAGQIDA
FT                   GRYALYLRILDENAAARPY"
FT   misc_feature    72620..72643
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   repeat_region   73059..73509
FT                   /note="Truncated insertion sequence"
FT   CDS             73244..73509
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2689A"
FT                   /product="transposase fragment for IS1663 (pseudogene)"
FT                   /note="This is a gene remnant of an IS1663 transposase.
FT                   This CDS has been marked up to the end of the IS1663
FT                   fragment. However, there is no stop codon within this
FT                   region and it is formally possible that, if expressed, the
FT                   translation of this CDS continues on into the Bordatella
FT                   genomic sequence forming a chimeric protein of 352 aa."
FT   misc_feature    complement(73442..73672)
FT                   /note="HMMPfam hit to PF00528, Binding-protein-dependent
FT                   transport systems inner membrane component"
FT   CDS             complement(73499..74194)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2690"
FT                   /product="probable ABC-transport protein, inner membrane
FT                   component (pseudogene)"
FT                   /note="Pseudogene. This CDS is disrupted by the insertion
FT                   of a defunct IS1663 element. Similar to many transporters
FT                   e.g. Bacillus firmus dipeptide transport system permease
FT                   protein DppC SW:DPPC_BACFI () (304 aa) fasta scores: E():
FT                   3.7e-32, 43.43% id in 221 aa."
FT   misc_feature    complement(join(73499..73564,73736..73801,73841..73906))
FT                   /note="4 probable transmembrane helices predicted for
FT                   BP2690 by TMHMM2.0 at aa 28-50, 96-118, 131-153 and
FT                   210-232"
FT   misc_feature    complement(73583..73669)
FT                   /note="ScanRegExp hit to PS00402, Binding-protein-dependent
FT                   transport systems inner membrane comp. sign."
FT   misc_feature    complement(73868..73954)
FT                   /note="ScanRegExp hit to PS00402, Binding-protein-dependent
FT                   transport systems inner membrane comp. sign."
FT   misc_feature    complement(74066..74194)
FT                   /note="Signal peptide predicted for BP2690 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.988) with cleavage site
FT                   probability 0.825 between residues 43 and 44"
FT   CDS             complement(74191..75144)
FT                   /transl_table=11
FT                   /locus_tag="BP2691"
FT                   /product="ABC-transport protein, inner membrane component"
FT                   /note="Similar to many membrane transport proteins
FT                   including: Agrobacterium tumefaciens Agr_l_323p agr_l_323
FT                   TR:AAK88730 (EMBL:AE008214) (328 aa) fasta scores: E():
FT                   1.6e-77, 67.53% id in 308 aa, and to Bacillus subtilis
FT                   oligopeptide transport system permease protein AppB
FT                   SW:APPB_BACSU () (317 aa) fasta scores: E(): 1.2e-42,
FT                   40.06% id in 317 aa"
FT                   /db_xref="GOA:Q7VVH4"
FT                   /db_xref="InterPro:IPR000515"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVH4"
FT                   /protein_id="CAE42968.1"
FT                   /translation="MATMFKLILRRVVVAIPTLILVSMIVFMLQKILPGDPVLTLAGEE
FT                   RDPAVLDYLREKYRLNDPLPVQYGAWVAQVLQGDLGKSMRTDVPVLTLIAQKLPVTLQL
FT                   AVMAMAFALLVGIPLGIVAAVRKGTAVEMGANMAALSGMSIPNFWLGIILTMVVSVQWK
FT                   LLPASGYVSPAEDFWLSIKTMLMPALVLSTAIAAYLMRHTRSAMLEALSADYVRTARAK
FT                   GVAPRKVVLRHALRNALMPIVTLVTLLFGELLAGAVLTEQVFTIPGFGKLIVDAVFNRD
FT                   YAVVQGVVLCVAVGFIVMNLLADILYILVNPRLRHA"
FT   misc_feature    complement(join(74215..74280,74368..74433,74548..74613,
FT                   74659..74709,74770..74835))
FT                   /note="6 probable transmembrane helices predicted for
FT                   BP2691 by TMHMM2.0 at aa 7-29, 103-125, 145-162, 177-199,
FT                   237-259 and 288-310"
FT   misc_feature    complement(74311..74526)
FT                   /note="HMMPfam hit to PF00528, Binding-protein-dependent
FT                   transport systems inner membrane component"
FT   misc_feature    complement(74437..74523)
FT                   /note="ScanRegExp hit to PS00402, Binding-protein-dependent
FT                   transport systems inner membrane comp. sign. Confirmed by
FT                   InterPro eMOTIF pattern match."
FT   misc_feature    complement(75061..75144)
FT                   /note="Signal peptide predicted for BP2691 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.698) with cleavage site
FT                   probability 0.492 between residues 28 and 29"
FT   CDS             complement(75230..76747)
FT                   /transl_table=11
FT                   /locus_tag="BP2692"
FT                   /product="ABC-transport protein, solute-binding component"
FT                   /note="Similar to many membrane transport proteins
FT                   including: Agrobacterium tumefaciens Agr_l_325p agr_l_325
FT                   TR:AAK88731 (EMBL:AE008214) (502 aa) fasta scores: E():
FT                   6.6e-100, 51.78% id in 504 aa, and to Bacillus halodurans
FT                   oligopeptide ABC transpoter Bh3026 TR:Q9K8I0
FT                   (EMBL:AP001517) (525 aa) fasta scores: E(): 1.6e-32, 30.48%
FT                   id in 492 aa"
FT                   /db_xref="GOA:Q7VVH3"
FT                   /db_xref="InterPro:IPR000914"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVH3"
FT                   /protein_id="CAE42969.1"
FT                   /translation="MTKTKSLSMMMGAAVLAGAGGAALAQDLRIGLQEDPDVLDPHRAR
FT                   TYVGRIVFTSLCDKLVDIDEKLQFVPQLAQSWSFSEDNKTLTFKLRTDVQFHDGSKFDA
FT                   AAARANLGRAMTLQDSMRKGELASVEKIEAPDPATLVLTLKRPDATLLAQLSDRAGMML
FT                   SPKAFEGDAAAVGRKPICSGPYKFVERVQNDRIVLQKFDQYYGAKDYHFDKLVFLPIPD
FT                   TTVRLSNLRAGGLDILERMNPSDAPQVKNDASVQFMPVSGLGYQEVFFNTGNGKRAETN
FT                   PFKDKRVRQALALSIDRAIINEVVGGGIFDPASQPFPPASPYHSDKFPVPKRDVERARA
FT                   LLKEAGLQKVKAEFAFGNNTTTSAIAERIQAMAAEAGFELSLRPTEYAAMLNEAQAGNF
FT                   EMIMRGWSGRVDPDGNIYQFVTCKGALNDGRYCNAEVDKLLAEARTVPDQAKRKAIYDQ
FT                   AQALLQADTHDIYLYYQPWPFVLGKNVRGFKPYPDGMVRLKGVTLVK"
FT   misc_feature    complement(75239..75655)
FT                   /note="HMMPfam hit to PF00496, Bacterial extracellular
FT                   solute-binding proteins, family 5"
FT   misc_feature    complement(75701..76675)
FT                   /note="HMMPfam hit to PF00496, Bacterial extracellular
FT                   solute-binding proteins, family 5"
FT   misc_feature    complement(76673..76747)
FT                   /note="Signal peptide predicted for BP2692 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.995 between residues 25 and 26"
FT   CDS             complement(76789..78417)
FT                   /transl_table=11
FT                   /locus_tag="BP2693"
FT                   /product="putative gamma-glutamyltranspeptidase"
FT                   /note="Similar to many putative
FT                   gamma-glutamyltranspeptidases e.g. Mycobacterium
FT                   tuberculosis putative gamma-glutamyltranspeptidase Rv0773c
FT                   TR:P71828 (EMBL:Z80226) (512 aa) fasta scores: E():
FT                   1.5e-90, 56.76% id in 525 aa. Also similar to Pseudomonas
FT                   sp acylase acy 1 [includes: cephalosporin acylase
FT                   SW:PAC1_PSES3 () (557 aa) fasta scores: E(): 1.1e-45,
FT                   31.81% id in 550 aa"
FT                   /db_xref="GOA:Q7VVH2"
FT                   /db_xref="InterPro:IPR019775"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVH2"
FT                   /protein_id="CAE42970.1"
FT                   /translation="MKAFNWVNPYPSTRIPVFARNVVSTSHPLAAQAGLRMLLKGGNAV
FT                   DAAIAAAATIVLVEPVSCGLGGDCFAIVWDGRQLHGLNSSGVAPAAWNVEYFKRKYGTG
FT                   PDGLAVQPKRGWDAVTVPGVVAGWAALHEKLGKLPFEQLFEPAIEIAERGYTVPPVVAH
FT                   KWAAAAAELGEQPGYAQAFMPEGRAPRVGEHFLFPDAAYALRRIAASGGRDFYEGELAE
FT                   RIAAFSKECGGAMTLDDLRNYRPEWVKPISRSYRGYELHEIPPNGQGIAALIALGICER
FT                   FDLADMPVDSVQSQHLQIEAMKLAFSDLYRYVADPRSMEVTPQQMLDDAYLDSRARLID
FT                   PDRATHFEAGRPHAGGTIYLTAADENGMMISFIQSNYMGFGSGVVVPGTGISLQNRGVG
FT                   FSMNPASANVVEGGKRPFHTIIPGFLTRGGKPVMSFGVMGGDMQPQGHLQTVIRMLDYH
FT                   QQPQAACCAPRWKVNRDFTLDIESTMNRATVEGLKNLGHRLKAVDDPYMDFGAGQFIWR
FT                   MAESDNDLGYVAASDSRRDGQAVGF"
FT   misc_feature    complement(76804..78315)
FT                   /note="HMMPfam hit to PF01019,
FT                   Gamma-glutamyltranspeptidase"
FT   misc_feature    complement(78190..78234)
FT                   /note="ScanRegExp hit to PS00678, Trp-Asp (WD) repeats
FT                   signature."
FT   CDS             78525..79406
FT                   /transl_table=11
FT                   /locus_tag="BP2694"
FT                   /product="LysR-family transcriptional regulator"
FT                   /note="Similar to many putative transcriptional regulators
FT                   e.g. Pseudomonas aeruginosa probable transcriptional
FT                   regulator Pa0816 TR:Q9I5C3 (EMBL:AE004516) (294 aa) fasta
FT                   scores: E(): 1.8e-20, 33.88% id in 304 aa"
FT                   /db_xref="GOA:Q7VVH1"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVH1"
FT                   /protein_id="CAE42971.1"
FT                   /translation="MSSIRFLRTFLAVAQHGTFSEAAEQVALTQAAVSFQMRALEAELG
FT                   RELFDRGGRLAILNAAGRELVPEIKRLLDLYDHLKAPRNVPGELAGSVSVGAIVSCMGT
FT                   LSKVVSQLKRDHPALDVRVFSGKASELAGKVEAGELDAALVVEAGRKMASTRWTPLYEE
FT                   PLVVLAHPHAPGADAREVLAANPFLRFDRTQRTGRQIDRIVRRLGGGLNEFLELNAIET
FT                   LVELVRQEVGVTLLPLLNGANWQASPQLRVLPLPAELGPAVRAIGMIERRDHARLAVTA
FT                   EICAQCGALFGR"
FT   misc_feature    78525..78590
FT                   /note="Signal peptide predicted for BP2694 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.716) with cleavage site
FT                   probability 0.571 between residues 22 and 23"
FT   misc_feature    78534..78956
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family"
FT   misc_feature    78573..78638
FT                   /note="Predicted helix-turn-helix motif with score 1314
FT                   (+3.66 SD) at aa 17-38, sequence GTFSEAAEQVALTQAAVSFQMR"
FT   misc_feature    78576..78668
FT                   /note="ScanRegExp hit to PS00044, Bacterial regulatory
FT                   proteins, lysR family signature."
FT   CDS             join(79452..79673,79673..79894)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2695"
FT                   /product="conserved hypothetical protein (pseudogene)"
FT                   /note="Pseudogene. This CDS appears to contain a deletion
FT                   that has lead to a shift in reading frame following codon
FT                   142. The sequence has been checked and is believed to be
FT                   correct. No significant database hits"
FT                   /db_xref="PSEUDO:CAE42972.1"
FT   misc_feature    79503..79526
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   variation       79673
FT                   /note="large deletion in pertussis relative parapertussis
FT                   and bronchiseptica"
FT   CDS             complement(join(80007..80684,80684..81943))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2696"
FT                   /product="putative phosphatase (pseudogene)"
FT                   /note="Similar to the C-terminal region of Xanthomonas
FT                   axonopodis alkaline phosphatase PhoX or Xac1792
FT                   SWALL:AAM36655 (EMBL:AE011811) (658 aa) fasta scores: E():
FT                   1.4e-162, 66.09% id in 646 aa, and to Volvox carteri
FT                   alkaline phosphatase precursor PhoX SWALL:Q9ZP14
FT                   (EMBL:AJ012458) (1365 aa) fasta scores: E(): 4.5e-35,
FT                   32.47% id in 662 aa"
FT                   /db_xref="PSEUDO:CAE42973.1"
FT   variation       complement(80685)
FT                   /note="(C)1 in pertussis; (C)2 in parapertussis and
FT                   bronchiseptica"
FT   CDS             complement(join(82060..82344,82344..82433))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2697"
FT                   /product="putative heat shock protein"
FT                   /note="Similar to Ralstonia solanacearumputative heat shock
FT                   protein 15 HslR or Rsc2642 or Rs04574 SWALL:Q8XW33
FT                   (EMBL:AL646071) (131 aa) fasta scores: E():3.8e-17, 53.33%
FT                   id in 120 aa overlap"
FT                   /db_xref="PSEUDO:CAE42974.1"
FT   CDS             82519..82893
FT                   /transl_table=11
FT                   /locus_tag="BP2698"
FT                   /product="endonuclease"
FT                   /note="Similar to Bacteriophage T4 endonuclease V DenV
FT                   SW:END5_BPT4 (P04418) (138 aa) fasta scores: E(): 2.2e-13,
FT                   40.83% id in 120 aa and to Chlorella virus pyrimidine
FT                   dimer-specific glycosylase TR:Q9W976 (EMBL:AF128157) (139
FT                   aa) fasta scores: E(): 2.1e-12, 38.71% id in 124 aa"
FT                   /db_xref="GOA:Q7VVH0"
FT                   /db_xref="HSSP:1ENJ"
FT                   /db_xref="InterPro:IPR004260"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVH0"
FT                   /protein_id="CAE42975.1"
FT                   /translation="MTRINCVPVEELSGPHLVAEYRELPRVFALAHKAAARGALVQPAA
FT                   YTLGKGHLLFFYTRLGYLARRHRALVEEMRRRGYRPAFAGVTCEDFADIPAPFWNDRTP
FT                   TEEALALNRARIAARGGGKA"
FT   CDS             complement(82918..83256)
FT                   /transl_table=11
FT                   /gene="glnB"
FT                   /locus_tag="BP2699"
FT                   /product="nitrogen regulatory protein"
FT                   /note="Similar to many nitrogen regulatory proteins e.g.
FT                   Rhodobacter sphaeroides P-II SW:GLNB_RHOSH () (112 aa)
FT                   fasta scores: E(): 8.4e-31, 76.78% id in 112 aa"
FT                   /db_xref="GOA:Q7VVG9"
FT                   /db_xref="HSSP:1HWU"
FT                   /db_xref="InterPro:IPR017918"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVG9"
FT                   /protein_id="CAE42976.1"
FT                   /translation="MKQVTAIIKPFKLDEVREALAEVGVSGLTVTEVKGFGRQKGHTEL
FT                   YRGAEYVVDFLPKIRVEVVLADDMVDPAIEAIVKAARTGKIGDGKIFVTPVEQAIRIRT
FT                   GESDEEAL"
FT   misc_feature    complement(82921..83256)
FT                   /note="HMMPfam hit to PF00543, Nitrogen regulatory protein
FT                   P-II"
FT   misc_feature    complement(82969..83010)
FT                   /note="ScanRegExp hit to PS00638, P-II protein C-terminal
FT                   region signature. Confirmed by InterPro eMOTIF pattern
FT                   match."
FT   misc_feature    complement(83104..83121)
FT                   /note="ScanRegExp hit to PS00496, P-II protein urydylation
FT                   site."
FT   CDS             complement(83300..84934)
FT                   /transl_table=11
FT                   /locus_tag="BP2700"
FT                   /product="putative NAD synthetase"
FT                   /note="Similar to many including: Rhodobacter capsulatus
FT                   glutamine-dependent NAD synthetase SW:NADE_RHOCA () (552
FT                   aa) fasta scores: E(): 1.4e-64, 46.25% id in 547 aa"
FT                   /db_xref="GOA:Q7VVG8"
FT                   /db_xref="InterPro:IPR014445"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVG8"
FT                   /protein_id="CAE42977.1"
FT                   /translation="MSLARVGIAQINACVGDLAGNAARVLQAARQAAGQGADVLVTPEL
FT                   VLTGYPPEDLLLRPRFIQEQQAVFERLCQDLAGLAGLHVVIGHVLARQDRLYNAATVVC
FT                   EGRVLGSYCKRELPNYSVFDEQRYFSAHGEAFGFTVKGVRFGLNICEDIWFERAPRAAA
FT                   ADGAQVLLVPNASPYNTGKQEERLSVARRSVQDTGCALIYANLVGGQDELVFDGASFAL
FT                   DAQGRMSARLPDFTEGVNVLEVDARSTVRPVTEQAAVQPYGLEEQVWNALVLGVRDYLG
FT                   KNGFPGAIIGLSGGIDSAVVLAVAVDAVGADNVRAVMMPSRYTADISLTDAADMARRLG
FT                   VQYDVIAIGEVVDRFEAALAPQFAGLPVDATEENIQARARGTLLMALSNKTGRLVLTTG
FT                   NKSEMTTGYCTLYGDMAGGFAVIKDVPKTLVYRLANWRNQRQPIIPERIITRPPSAELR
FT                   PDQTDQDSLPPYDILDGIIERYMEHNASAADIVAAGFPREAVGQVVRLIRINEYKRRQA
FT                   PPGPRITPRAFGRDWRYPVTNGFRETV"
FT   misc_feature    complement(83369..83980)
FT                   /note="HMMPfam hit to PF02540, NAD synthase"
FT   misc_feature    complement(84149..84928)
FT                   /note="HMMPfam hit to PF00795, Carbon-nitrogen hydrolase"
FT   CDS             complement(84973..86319)
FT                   /transl_table=11
FT                   /locus_tag="BP2701"
FT                   /product="putative membrane transport protein"
FT                   /note="Similar to many proteins of undefined function e.g.
FT                   Escherichia coli hypothetical protein YbdG SW:YBDG_ECOLI
FT                   (P39455) (415 aa) fasta scores: E(): 3.3e-60, 42.23% id in
FT                   393 aa"
FT                   /db_xref="GOA:Q7VVG7"
FT                   /db_xref="InterPro:IPR006685"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVG7"
FT                   /protein_id="CAE42978.1"
FT                   /translation="MLPKELENVVATLDNYVPDTAWGQTLVGIGVLVLTALFVQWVVAR
FT                   VVLYFAHRLLVLSGREDWDRALSRRRAYQNFWYAVPFAVVSMGIELVPHAERAVTVVGR
FT                   LSHAGAWICVFVAFSGVLSAWQDTYSATTRAQTRSIKGYIQIGKLILCAVGAVLVLSIL
FT                   LDRSPLWMISGLGALSAVLLLVFKDTLLSLVASTQLTSNDMLRIGDWIEMPQANADGFV
FT                   KDIALHTVKVQNWDNTVTTVPTYKLFSESYRNYRHMFESGGRRIKRTLRLDAASVRFMN
FT                   EEEGGRLKRFVLLRDYLQAKEDALLEANRQLGELAEVPANRRRLTNIGTFRGYALAYLR
FT                   QHPEVRQDIAMMVRMMEPQPNGIPIEIYCFTAITAWVEYERIQGDIFDHLLAILPELGL
FT                   RLFQEPSGSDLGNLAGGMREAALHEFRREQVAAGEAPLALRGDGAAPVR"
FT   misc_feature    complement(85114..85887)
FT                   /note="HMMPfam hit to PF00924, Mechanosensitive ion
FT                   channel"
FT   misc_feature    complement(join(85762..85812,85828..85893,85945..85995,
FT                   86041..86091,86194..86259))
FT                   /note="5 probable transmembrane helices predicted for
FT                   BP2701 by TMHMM2.0 at aa 20-42, 76-93, 108-125, 142-164 and
FT                   169-186"
FT   CDS             86427..87848
FT                   /transl_table=11
FT                   /gene="argH"
FT                   /locus_tag="BP2702"
FT                   /product="argininosuccinate lyase"
FT                   /EC_number="4.3.2.1"
FT                   /note="Similar to many e.g. Pseudomonas aeruginosa
FT                   argininosuccinate lyase ArgH or Pa5263 SW:ARLY_PSEAE
FT                   (P50987) (464 aa) fasta scores: E(): 8.1e-115, 66.81% id in
FT                   449 aa"
FT                   /db_xref="GOA:Q7VVG6"
FT                   /db_xref="InterPro:IPR000362"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VVG6"
FT                   /protein_id="CAE42979.1"
FT                   /translation="MANTSHSSQDQFANKAQAWSARFSEPVSDLVKRYTASVDFDKRMA
FT                   RHDIRGSLAHADMLAAQGIISAQDLADIQRGMQQILSEIDAGSFQWLLDLEDVHLNIEK
FT                   RLVELVGDAGKRLHTGRSRNDQVATDIRLWLRDEIDTLVDLLRQLRHALATVALENAAT
FT                   IMPGFTHLQVAQPVTFGHHLLAYAEMFGRDAERLADCRRRVNRLPLGAAALAGTSYPID
FT                   RERVARTLGFDGVCRNSLDAVSDRDFGIEFCAAGALIMTHISRLSEELVLWMSPRVGFI
FT                   DLADRFCTGSSIMPQKKNPDVPELARGKTGRVNGHLVALLTLMKGQPLAYNKDNQEDKE
FT                   GLFDTADTLRDTLTIFADMAGGIKVKADNMRAAALQGFATATDLADYLVKRGLPFRDAH
FT                   EIVAHAVRDCEQRGCDLADLSLADLQAYHPSIGEDIHQVLTLEGSVAARKHIGGTAPER
FT                   VREEAQRVLAETAGA"
FT   misc_feature    86487..87764
FT                   /note="HMMPfam hit to PF00206, Lyase"
FT   misc_feature    87294..87323
FT                   /note="ScanRegExp hit to PS00163, Fumarate lyases
FT                   signature. Confirmed by InterPro eMOTIF pattern match."
FT   CDS             complement(87918..88502)
FT                   /transl_table=11
FT                   /locus_tag="BP2703"
FT                   /product="hypothetical protein"
FT                   /note="Similar to many proteins of undefined function e.g.
FT                   Pseudomonas aeruginosa hypothetical protein Pa3208
FT                   TR:Q9HZ32 (EMBL:AE004744) (186 aa) fasta scores: E():
FT                   9.6e-18, 38.83% id in 188 aa"
FT                   /db_xref="GOA:Q7VVG5"
FT                   /db_xref="InterPro:IPR000415"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVG5"
FT                   /protein_id="CAE42980.1"
FT                   /translation="MTVSPLHALTSRRSMKFLRAPAPKQDELEQILQAAMSAPDHGALR
FT                   PWRFVLIRGDAIGRLADLAIEAVKRSGDKRMTPEKEKSVREWAAGVPLFIAVAQKISHD
FT                   NTRIPEQEQLLATGAAVMNILNAAHMLGYGAFWSTGLGTYVEDVQDALGLDAMDYRFLG
FT                   FVALGTPGCAVPPAQRPDFREFVSEWQGVTA"
FT   misc_feature    complement(88044..88493)
FT                   /note="HMMPfam hit to PF00881, Nitroreductase family"
FT   CDS             complement(88605..89555)
FT                   /transl_table=11
FT                   /locus_tag="BP2704"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTA3"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTA3"
FT                   /protein_id="CAE42981.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS"
FT   repeat_region   88605..88636
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   complement(88605..89657)
FT   misc_feature    complement(88641..89174)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   misc_feature    complement(89232..89297)
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   repeat_region   complement(89626..89657)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             89690..90796
FT                   /transl_table=11
FT                   /locus_tag="BP2705"
FT                   /product="putative molybdenum-binding protein"
FT                   /note="Similar to several including : Clostridium
FT                   acetobutylicum molybdate-binding protein Cac0252 TR:Q97ME6
FT                   (EMBL:AE007538) (319 aa) fasta scores: E(): 1.6e-14, 34.68%
FT                   id in 173 aa and Alcaligenes eutrophus formate
FT                   dehydrogenase FdsR TR:Q9RBF7 (EMBL:AJ007718) (299 aa) fasta
FT                   scores: E(): 5.4e-48, 50.17% id in 293 aa"
FT                   /db_xref="GOA:Q7VVG4"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVG4"
FT                   /protein_id="CAE42982.1"
FT                   /translation="MTYKFRIGLRPQWVLEGGEGAAGQPLQDMLALLAAIDDSGNIAGA
FT                   CKTCGLSYRHAWGVLRRFEALFGMPLLVTRRRLGTALSPFAQRLLWANRRIDARLMPTL
FT                   ESLASELQEELERLLPESGPHLRLHASHGFAVEALMQHLDTRLPGVELRYRTAAEALAS
FT                   LRGNDCDLAGFQVPQGEFEAPILRLYAQWLDPDEHLLIHLAVRNTGLFVVAGNPKGIGG
FT                   VADLARADVRFVNRQAGSSTYYLVNLMLQRAGVAPAAVQGYQNNEFTHMAVAAHIASGM
FT                   ADTGIGVETAARRFGLDFIPLVRERYFFAIRKTALESAAMRALLEGMRSPEYRGFVGQL
FT                   PGYDASDTGAIQTLEQAFARDFRPRAAL"
FT   CDS             90807..91904
FT                   /transl_table=11
FT                   /gene="moaA"
FT                   /locus_tag="BP2706"
FT                   /product="molybdenum cofactor biosynthesis protein"
FT                   /note="Similar to many including: Bacillus subtilis
FT                   molybdenum cofactor biosynthesis protein a MoaA or
FT                   SW:MOAA_BACSU (P39757) (341 aa) fasta scores: E(): 3.5e-67,
FT                   54.89% id in 337 aa"
FT                   /db_xref="GOA:Q7VVG3"
FT                   /db_xref="InterPro:IPR007197"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVG3"
FT                   /protein_id="CAE42983.1"
FT                   /translation="MSKVIFLTDRRQADLAAPSADLPPAGEPARDVRARPLRDLRISVT
FT                   DRCNFRCTYCMPREVFDSSYAFMPHSALLSFEEITRLAAQFARLGVEKIRLTGGEPLLR
FT                   KNIETLVGMLAELRTPAGRPLDLTLTTNGSLLARKAAALKQAGLSRVTVSLDALDAALF
FT                   ARMSDSNFSPDDVLRGIDAAAEAGLAPVKVNMVVRRGLNDGEILPMARRFRGSGHILRF
FT                   IEYMDVGSTNGWNLSEVVPSDEVLARIAEHHPLAPLDTPVMGRVAERWRYDDGGGEIGA
FT                   ISSVTHAFCSGCTRARLSPEGRLFLCLFASHGHDLRAPLREGADDDSLARILTGIWGQR
FT                   DDNYSERRGQGGGAADRIEMSYIGG"
FT   misc_feature    90936..90971
FT                   /note="ScanRegExp hit to PS01305, moaA / nifB / pqqE family
FT                   signature. Confirmed by InterPro eMOTIF pattern match."
FT   misc_feature    91056..91718
FT                   /note="HMMPfam hit to PF01444, moaA / nifB / pqqE family"
FT   CDS             complement(92049..93254)
FT                   /transl_table=11
FT                   /gene="moeA"
FT                   /locus_tag="BP2707"
FT                   /product="molybdopterin cofactor biosynthesis protein"
FT                   /note="Similar to many including: Escherichia coli
FT                   molybdopterin biosynthesis protein MoeA or Chle or BisB or
FT                   NarE or B0827 SW:MOEA_ECOLI (P12281) (411 aa) fasta scores:
FT                   E(): 8.4e-42, 37.73% id in 371 aa"
FT                   /db_xref="GOA:Q7VVG2"
FT                   /db_xref="HSSP:1G8L"
FT                   /db_xref="InterPro:IPR005111"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVG2"
FT                   /protein_id="CAE42984.1"
FT                   /translation="MLEFDQAQQLLAQAGAPVAGTENVALEQADGRVLATDLAATVDLP
FT                   PADNSAMDGYAIRLADYQAGARMPVQQRAYAGDMPQALIPGQATRLFTGSLIPAGADTV
FT                   VMQEDAREADGQVEITQAPTLGQWIRKRGDGTTAGRPLLDAGTLLHAGHVGLLGTQGLA
FT                   SVPVRARLRIGVLTTGDELVAPGQPRAAQQIYNSNGPMLAALVRGMGAQVSHVLHARDD
FT                   EDALRAALCTLLADSDLVLSSGGVSVGERDLVKPVLEALGGELGLWKVRMKPGKPVALA
FT                   HIDGKPVVCLPGNPVSSYAVFALLVSPLVRRMQGRAELYPTVSRLPLRTERPRQDSREE
FT                   FLRVQWRATEDGAGELQPFGNQDSAIITSVPWSTGLARLPAGVPVNDGERVGYYDLRHW
FT                   LT"
FT   misc_feature    complement(92067..93254)
FT                   /note="HMMPfam hit to PF00994, Molybdenum cofactor
FT                   biosynthesis protein"
FT   misc_feature    complement(92412..92516)
FT                   /note="ScanRegExp hit to PS01079, Molybdenum cofactor
FT                   biosynthesis proteins signature 2. Confirmed by InterPro
FT                   eMOTIF pattern match."
FT   CDS             complement(93261..93782)
FT                   /transl_table=11
FT                   /gene="moaB"
FT                   /locus_tag="BP2708"
FT                   /product="molybdenum cofactor biosynthesis protein"
FT                   /note="Similar to Escherichia coli, and molybdenum cofactor
FT                   biosynthesis protein B MoaB or Chla2 or B0782 or Z1001 or
FT                   Ecs0860 SW:MOAB_ECOLI (P30746) (169 aa) fasta scores: E():
FT                   1e-29, 52.56% id in 156 aa"
FT                   /db_xref="GOA:Q7VVG1"
FT                   /db_xref="HSSP:1O8O"
FT                   /db_xref="InterPro:IPR013484"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVG1"
FT                   /protein_id="CAE42985.1"
FT                   /translation="MNDAKQVSLVCAILTVSDSRSAGDDTSGNMLAESLAHAGHMCVRR
FT                   DLVKKDLYQIRRVISEWIADPEVQVILVSGGTGFTPRDCTAQTIEPLFDKTIEGFGELF
FT                   RQLSYEEIGSSAVQSSALAGTANDTVIFCMPGSNHACKLGWNRIIREQLDDAHKPCNFA
FT                   MHYRAKPDAD"
FT   CDS             complement(93779..94270)
FT                   /transl_table=11
FT                   /gene="moaE"
FT                   /locus_tag="BP2709"
FT                   /product="molybdopterin converting factor"
FT                   /note="Similar to Haemophilus influenzae molybdopterin
FT                   converting factor, subunit 2 MoaE or Hi1673 SW:MOAE_HAEIN
FT                   (P45308) (150 aa) fasta scores: E(): 1.9e-23, 44.37% id in
FT                   151 aa"
FT                   /db_xref="GOA:Q7VVG0"
FT                   /db_xref="HSSP:1FM0"
FT                   /db_xref="InterPro:IPR003448"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVG0"
FT                   /protein_id="CAE42986.1"
FT                   /translation="MNIMVIVQEADFDSAALLAALRERVGGQAGAIVTFVGYVRDFAPE
FT                   QATETLYLDHYPGMCERELETIAATARERWDLAGTVIAHRVGALPRGAQIVFVAAASAH
FT                   RGDAFRGCEYIIDALKTRAPFWKRETLAAGDSFWVEQRQSDADRTQSWDDPGTPTKEHP
FT                   "
FT   misc_feature    complement(93902..94267)
FT                   /note="HMMPfam hit to PF02391, Molydopterin converting
FT                   factor subunit 2"
FT   CDS             complement(94267..94518)
FT                   /transl_table=11
FT                   /gene="moaD"
FT                   /locus_tag="BP2710"
FT                   /product="molybdopterin converting factor"
FT                   /note="Similar to Escherichia coli molybdopterin converting
FT                   factor, subunit 1 MoaD or Chla4 or ChlM or B0784
FT                   SW:MOAD_ECOLI (P30748) (81 aa) fasta scores: E(): 4.9e-05,
FT                   46.34% id in 82 aa"
FT                   /db_xref="GOA:Q7VVF9"
FT                   /db_xref="HSSP:1JW9"
FT                   /db_xref="InterPro:IPR003749"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVF9"
FT                   /protein_id="CAE42987.1"
FT                   /translation="MSGATIKVLYFARVAELVGKRTEDWPLAETVTGAQLLAALAARYP
FT                   QLEPAERLKLAVNQTHVKVGASVRPGDEVAVFEPVTGG"
FT   CDS             complement(94499..94984)
FT                   /transl_table=11
FT                   /gene="moaC"
FT                   /locus_tag="BP2711"
FT                   /product="molybdenum cofactor biosynthesis protein"
FT                   /note="Similar to Haemophilus influenzae molybdenum
FT                   cofactor biosynthesis protein C MoaC or Hi1675
FT                   SW:MOAC_HAEIN (P45310) (160 aa) fasta scores: E(): 4.2e-24,
FT                   49.02% id in 153 aa"
FT                   /db_xref="GOA:Q7VVF8"
FT                   /db_xref="HSSP:1EKR"
FT                   /db_xref="InterPro:IPR002820"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VVF8"
FT                   /protein_id="CAE42988.1"
FT                   /translation="MSTTPTLSHLDESGQIRMVDVGHKTDTDRVAIARGSVRMNATAYG
FT                   LLTQPGQGKGEVLNTARVAAVLAAKRCAELIPLCHSLPLAFVGIDFELDEAAHSVHIRA
FT                   TCRTQYKTGVEMEAMTACSVAALTIYDMCKAADKGIVIEQIRLQYKAGGKSGEWRND"
FT   misc_feature    complement(94526..94933)
FT                   /note="HMMPfam hit to PF01967, MoaC family"
FT   CDS             95120..98581
FT                   /transl_table=11
FT                   /locus_tag="BP2712"
FT                   /product="putative exported protein"
FT                   /note="Similar over entire range to Pseudomonas aeruginosa
FT                   hypothetical protein Pa4735 TR:Q9HV64 (EMBL:AE004887) (1088
FT                   aa) fasta scores: E(): 2.2e-37, 28.25% id in 1161 aa"
FT                   /db_xref="InterPro:IPR008023"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVF7"
FT                   /protein_id="CAE42989.1"
FT                   /translation="MPVRMPGVRLTRRTVKVLLATVLVVLLLAGLAAWQVPRIVRGALT
FT                   QDVSAMLGRDVSVGKIRFNPFTLTLRAHDLALAQPEGAAPLLQVAELDVSASWMSLFWF
FT                   APVVDSLVVRQPKVALVREDVTRFNFSDIQKKVADMAAQSPPEPEPESGPPRFSLNNMV
FT                   LEGGEITLDDKVSGRQQRIDEIALGVPFISTFGYATDIDVQPRVHMRINGSPFDLTGVA
FT                   RPFDTVPSSTLDVSFAGLELEKWADAWPLPLPVKLERALLDSDLQVLFEQPKDAAPRIK
FT                   VVGELGLRQLDVRESSGDVLAQWSALAVRRIAFEPMQRSLYVGEVELWSPQIQTRRYAD
FT                   QRLNWLDIAQKLQKLGAGDAPAKPTAASAPAPAPAPAPAQAQAQAPESATPAAAQAAAA
FT                   PQASAAAAAPDAWHVVVDAINVRDAELHLRDAVTKLDYVMNGVGATVEGLELPQPPDRP
FT                   IGLWLTMDSTIDGSWLRAKGSLTLEPLNLDVKVELDRLALARLAPAVRASAPILVEDGR
FT                   LGAQARVRVAQRDGATQVVAEGAALRLSDLSLRDESVKPAVPVSVKQFEARFDRLALDA
FT                   QPSPFTLKADGVQGEGALAMQGSLTAQPLALKSSVDLARLDLAPFAPYIASSLNATVRA
FT                   INLSARGDAEFAAAAGATPMKAAWRGALDVNDLDLADRVNRDDFMQWKRLGLAGMQVSV
FT                   NGDAFAANLGDITLDDFYGRVLLNAEGRLNVMDLVAEPGQAGCSITQDTQTRARAAAPA
FT                   KPGPMPDIAIGSVTLKGGKVTFTDRFVKPNYTAELSRIEGSVSAVSSRQPKPAKVNVAG
FT                   RVYTSAPFSISGTVQPFAQFLSLDLKASAKGVDLPRFTTYSAKYVGYPIKRGKLSLDVQ
FT                   YQIKDRALQASNRVVLNQLTFGDKTDSPDAVKLPVLLAVALLKDSRGNIDINLPISGSL
FT                   DDPQFSVGGIIVRVLVNLVVKAVTSPFTLLASAFGGGEELSYIEFDPGSAALTPEAESR
FT                   IETLAKALNDRPGLKLDVAGRADPASDEEGLRQAWVERQIRLAKARDTGGRGKKPPPDG
FT                   VEVAPAERAQYLEEVYDDTKIEDKPRNFIGMAKSIPAEQMEALLRGAAPLGAEDLRKLA
FT                   DARAQAVYEKLQAEGPADRIFVVAPQLDADGIKDDGKPTRVDFSLK"
FT   misc_feature    95120..95215
FT                   /note="Signal peptide predicted for BP2712 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.997) with cleavage site
FT                   probability 0.525 between residues 32 and 33"
FT   CDS             98599..99483
FT                   /transl_table=11
FT                   /locus_tag="BP2713"
FT                   /product="putative hydrolase"
FT                   /note="Similar to Methylobacterium extorquens putative
FT                   carboxymethylenebutenolidase SW:DLHH_METEX (P71505) (291
FT                   aa) fasta scores: E(): 4.8e-59, 56.8% id in 294 aa. Also
FT                   similar to BP1256, 55.253% identity (55.469% ungapped) in
FT                   257 aa overlap."
FT                   /db_xref="GOA:Q7VVF6"
FT                   /db_xref="InterPro:IPR006311"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVF6"
FT                   /protein_id="CAE42990.1"
FT                   /translation="MTDADPQFDSLLPPLTLTRRGFVVTSLAAGFSLAAGAAAAQSAIH
FT                   TDAAGLTAGKVDIPTPDGKMPAYRAAPAGKKDLPTLLVVSEIFGVHEYIQDVCRRLARL
FT                   GYQAVAPELFARYDDPTGYTDIGRLRAEVVGKAGDRQVLADLDAAAAWAAANGGNASRL
FT                   GILGFCWGGRIVWLYAAHNPGLKAGAAWYGQLGGQASELKPRSVLESIGDLKAPVLGAY
FT                   GGKDAGIPLSDVDRMRLALAKGPQAARDSRIDVYPEAPHAFHADYRPSYRKAEAEQAWQ
FT                   RMLDWFGQHGLAA"
FT   misc_feature    98599..98718
FT                   /note="Signal peptide predicted for BP2713 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.929) with cleavage site
FT                   probability 0.592 between residues 47 and 48"
FT   misc_feature    98791..99471
FT                   /note="HMMPfam hit to PF01738, Dienelactone hydrolase
FT                   family"
FT   CDS             complement(99493..99924)
FT                   /transl_table=11
FT                   /locus_tag="BP2714"
FT                   /product="putative lipoprotein"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVF5"
FT                   /protein_id="CAE42991.1"
FT                   /translation="MSRHFLAALLLAAASGAACAQAGADPAGQAIFDQIVLTSGAANGA
FT                   ARTCGASPPDLAQHAETWRLNLRRYADEYHYAFDSFDERYARGQQEGAEMMADMRASGV
FT                   DGCTGALASFQRERAMTYDEMKQAIAEATDGLPEDQPAD"
FT   misc_feature    complement(99865..99924)
FT                   /note="Signal peptide predicted for BP2714 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.993) with cleavage site
FT                   probability 0.397 between residues 40 and 41"
FT   misc_feature    complement(99868..99900)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             100171..100674
FT                   /transl_table=11
FT                   /locus_tag="BP2715"
FT                   /product="AhpC/TSA-family protein"
FT                   /note="Similar to Caulobacter crescentus ahpc/tsa family
FT                   protein Cc3394 TR:Q9A312 (EMBL:AE006000) (160 aa) fasta
FT                   scores: E(): 2.3e-30, 53.61% id in 166 aa and Rhizobium
FT                   meliloti hypothetical peroxiredoxin protein Smc00072
FT                   TR:CAC45487 (EMBL:AL591785) (161 aa) fasta scores: E():
FT                   5.1e-27, 50.9% id in 165 aa"
FT                   /db_xref="GOA:Q7VVF4"
FT                   /db_xref="HSSP:1HD2"
FT                   /db_xref="InterPro:IPR012335"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVF4"
FT                   /protein_id="CAE42992.1"
FT                   /translation="MTIKAGDRVPDGTLTEFIETETAGCTLGPNAFQVADLVKGKKIAL
FT                   FAVPGAFTPTCSAKHLPGYVEQAAALRAKGIDEIWCVAVNDAFVMGAWGREQQAGGKVR
FT                   MLADGSALWTTALGLELDLVQRGMGVRSQRYSALIDDGVVKQLNIEAPGKFEVSDAATM
FT                   LAQA"
FT   misc_feature    100183..100665
FT                   /note="HMMPfam hit to PF00578, AhpC/TSA family"
FT   CDS             100752..102152
FT                   /transl_table=11
FT                   /locus_tag="BP2716"
FT                   /product="putative membrane transport protein"
FT                   /note="Similar to many membrane transport proteins e.g.
FT                   Pseudomonas aeruginosa probable MFS transporter Pa4887
FT                   TR:Q9HUS6 (EMBL:AE004901) (438 aa) fasta scores: E():
FT                   1.2e-78, 54.5% id in 455 aa"
FT                   /db_xref="InterPro:IPR011701"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVF3"
FT                   /protein_id="CAE42993.1"
FT                   /translation="MLTTISSFSSLYFATLLMLIGTGLFNTYMGLRLTAQSVNEIWIGA
FT                   LIAGYYLGLVCGARLGHKLIIRVGHIRAFVACAAVATSMILAQALVDHLPLWLLLRLIS
FT                   GIVMVTEFMVIESWLNEQTENHQRGRVFSVYMVVSGLGTVLGQLALTAYATLDDGPLTL
FT                   VAMCLVLCLVPIAVTARSHPPTPLPAPLDLRFFASRVPLSLTVLFVAGNLSGAFYGLAA
FT                   VYAAKHGLSTSQSAIFVAAAVTAGLLSQWPMGWLSDRINRAGLIRFNAAVLVLLPVLMW
FT                   GWIVLPYWAMVALSCVFGVLQFTLYPLGAAFANDHVEPERRVGLSAILLMTYGVGACLG
FT                   PLIAGVMMSLGGPGMYYVFISACAVILVWQVRPARVTGAHQVDEAPVHFVPMPDTLQSS
FT                   PAAVALDPRVDPDVDITMEMADPGPDVVEPPAPAGPPAPAADSESTSAPQAGEQAAPDD
FT                   AAARRTGT"
FT   misc_feature    join(100752..100814,100872..100934,100953..101012,
FT                   101040..101108,101145..101213,101226..101294,
FT                   101355..101423,101451..101519,101538..101606,
FT                   101616..101684,101718..101786,101796..101864)
FT                   /note="12 probable transmembrane helices predicted for
FT                   BP2716 by TMHMM2.0 at aa 21-43, 63-83, 90-109, 119-141,
FT                   154-176, 181-203, 224-246, 256-278, 285-307, 311-333,
FT                   345-367 and 371-393"
FT   misc_feature    100755..101918
FT                   /note="HMMPfam hit to PF00083, Sugar (and other)
FT                   transporter"
FT   CDS             complement(102227..103102)
FT                   /transl_table=11
FT                   /locus_tag="BP2717"
FT                   /product="putative exported protein"
FT                   /note="Similar to many proteins of undefined function e.g.
FT                   Neisseria meningitidis hypothetical protein Nmb1028
FT                   TR:Q9JZJ2 (EMBL:AE002453) (291 aa) fasta scores: E():
FT                   3.1e-51, 52.26% id in 287 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVF2"
FT                   /protein_id="CAE42994.1"
FT                   /translation="MNQGLLYLAASVACSVTVAVLLKLARRHAIDVRQAIAVNYAVAAA
FT                   LCWLLLRPDAQALRQAMQGVPVLAALAVLLPTVFVAMARSVRYAGIVKSDAAQRLSLFI
FT                   PLLAAFALFGESLTARKLAAIALAFAALACLLRRRAPAGAAADDAPDDRRAAWMWPLAV
FT                   WAGYGVIDILFKQLARSGTAFSAGLLATFVAAGLLTLAYLCIRRTRWQARHALAGVALG
FT                   LANFGNILTYVRAHQSLPDHPALVFGAMNMGVITAGTLVGALAFRERLSALNLAGLALA
FT                   LAAIAAMLPW"
FT   misc_feature    complement(join(102233..102283,102305..102370,
FT                   102401..102466,102488..102553,102584..102634,
FT                   102695..102751,102764..102814,102854..102916,
FT                   102947..102997))
FT                   /note="10 probable transmembrane helices predicted for
FT                   BP2717 by TMHMM2.0 at aa 5-22, 35-52, 62-83, 96-113,
FT                   117-136, 156-173, 183-205, 212-234, 244-266 and 273-290"
FT   misc_feature    complement(103046..103102)
FT                   /note="Signal peptide predicted for BP2717 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.931) with cleavage site
FT                   probability 0.709 between residues 19 and 20"
FT   CDS             complement(103099..104121)
FT                   /transl_table=11
FT                   /locus_tag="BP2718"
FT                   /product="biotin synthase"
FT                   /note="Similar to many e.g. Haemophilus influenzae biotin
FT                   synthase BioB or Hi1022 SW:BIOB_HAEIN (P44987) (333 aa)
FT                   fasta scores: E(): 1.9e-79, 63.29% id in 316 aa"
FT                   /db_xref="GOA:Q7VVF1"
FT                   /db_xref="HSSP:1R30"
FT                   /db_xref="InterPro:IPR007197"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VVF1"
FT                   /protein_id="CAE42995.1"
FT                   /translation="MEPRPMHTAYVPVPAPVRPPSAERWPLAAVAELFELPFLDLLHRA
FT                   QQVHRQHFDANTVQLSSLLSIKTGGCPEDCAYCPQSAHYDTGVDADKLMPLDEVVRAAR
FT                   AAQANGAQRFCMGAAWRSPKPHHLEAVAEMIGAVKALGMETCVTLGMLRDGQAEQLKAA
FT                   GLDYYNHNLDTAPEFYGKIISTRTYQDRLDTLQQVREAGINVCCGGIVGMGESRRDRAG
FT                   LVAQLTNMEPYPESVPINNLVQVEGTPLAGAETLDPFEFIRTIAVARITMPLAKVRLSA
FT                   GRETMSDSEQALCFMAGANSIFYGDVLLTTGNPQVEADRRLLQRLGMRAEGLPCAAGQA
FT                   "
FT   misc_feature    complement(103135..104055)
FT                   /note="HMMPfam hit to PF01792, Biotin synthase"
FT   CDS             104574..104879
FT                   /transl_table=11
FT                   /locus_tag="BP2719"
FT                   /product="putative exported protein"
FT                   /note="no significant database hits. Similar to BP0266,
FT                   BP1766, BP3099, BP3683, and BP3731"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVF0"
FT                   /protein_id="CAE42996.1"
FT                   /translation="MNRIATALILSASVFGVAQAGELDYPPAIESASALSHTQVQAELQ
FT                   AARTQGLMAAGEQDYPIAAYAAASTVSREQVRDELAAARAQGLTESGELAYPPVAG"
FT   misc_feature    104574..104633
FT                   /note="Signal peptide predicted for BP2719 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.995 between residues 20 and 21"
FT   CDS             104970..105560
FT                   /transl_table=11
FT                   /locus_tag="BP2720"
FT                   /product="putative TetR-family transcriptional regulator"
FT                   /note="Similar to many proposed regulators e.g. Rhizobium
FT                   loti transcriptional regulator Mlr4666 TR:Q98DK2
FT                   (EMBL:AP003004) (195 aa) fasta scores: E(): 2.7e-15, 34.09%
FT                   id in 176 aa"
FT                   /db_xref="GOA:Q7VVE9"
FT                   /db_xref="InterPro:IPR012287"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVE9"
FT                   /protein_id="CAE42997.1"
FT                   /translation="MDTPSTNTTREQLLDYAQKLIRTRGCNGFSYRDLADHVGVKTSSV
FT                   HYYFPCKDDLLYEAVENYTGSALETLRGISPTLPAKERLDAYIAMVESHSCQADQLCLG
FT                   GMLAAELNTLPERVRAALQAFFTVEENWLAKVLADGAREGTLRYASTPEKAARALFATV
FT                   QGCLLGARLFQRPPELREALGALYVQCGASPAH"
FT   misc_feature    105006..105146
FT                   /note="HMMPfam hit to PF00440, Bacterial regulatory
FT                   proteins, tetR family"
FT   misc_feature    105054..105119
FT                   /note="Predicted helix-turn-helix motif with score 1755
FT                   (+5.16 SD) at aa 29-50, sequence FSYRDLADHVGVKTSSVHYYFP"
FT   repeat_region   complement(105722..106952)
FT                   /note="Insertion sequence"
FT   CDS             complement(105751..106767)
FT                   /transl_table=11
FT                   /locus_tag="BP2721"
FT                   /product="transposase for IS1663"
FT                   /note="Similar to Neisseria meningitidis putative
FT                   invertase/transposase Nma1800 TR:Q9JTF3 (EMBL:AL162757)
FT                   (318 aa) fasta scores: E(): 2e-17, 28.48% id in 316 aa and
FT                   Acinetobacter spSE19. pilin inverting protein ChnY
FT                   TR:Q9F7E1 (EMBL:AF282240) (324 aa) fasta scores: E():
FT                   8.2e-50, 47.516% id in 322 aa"
FT                   /db_xref="GOA:Q7TTM7"
FT                   /db_xref="InterPro:IPR003346"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTM7"
FT                   /protein_id="CAE42998.1"
FT                   /translation="MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKVVVN
FT                   TAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQAATALPQVRVSLVNPAQARDFAKA
FT                   LALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELNRKE
FT                   KSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQ
FT                   AGNAILAVMHNRHIDSAQSLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAA
FT                   LVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLCFGVLKNRIPYQPNYAMNG"
FT   misc_feature    complement(105883..106215)
FT                   /note="HMMPfam hit to PF02371, Transposase
FT                   IS116/IS110/IS902 family"
FT   misc_feature    complement(106228..106515)
FT                   /note="HMMPfam hit to PF01548, Transposase"
FT   CDS             complement(106959..109295)
FT                   /transl_table=11
FT                   /locus_tag="BP2722"
FT                   /product="putative membrane transport ATPase"
FT                   /note="Similar to Pseudomonas putida Cadmium-Transporting
FT                   ATPase CadA TR:AAK48831 (EMBL:AF333961) (737 aa) fasta
FT                   scores: E(): 6.3e-147, 62% id in 737 aa and to Pseudomonas
FT                   aeruginosa probable metal-transporting P-type ATPase pa3690
FT                   TR:Q9HXV0 (EMBL:AE004788) (740 aa) fasta scores: E():
FT                   5.2e-141, 60.85% id in 746 aa"
FT                   /db_xref="GOA:Q7VVE8"
FT                   /db_xref="InterPro:IPR008250"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVE8"
FT                   /protein_id="CAE42999.1"
FT                   /translation="MPSTTRDLALDMPSGQRTDAHGHDHAGHDHAGHDHAGHDHAHDHG
FT                   IPACCGHGHGQPAAPAAAPAWQPGPGQQVTRVRIGQMDCPTEETLIRKKLASLPEVHEL
FT                   DFNLMQRVLIVLHADGALDRIDAAIRSLGMTPEPLAGDAPATPAGAAAPSRGWRLLAAG
FT                   GVLAALSELAHFTGQPVYVAAALALAAILACGLSTYRKGWIAVRNGNLNINALMSIAVT
FT                   GAMLIGQWPEAAMVMFLFNVAELIEARALDRARHAVRGLLDLAPQTATARQPDGSWAEV
FT                   PAARLRPGDLVRVRPGERIAADGTISEGQSAIDQSPITGESLPVEKGPDDDVYAGTVNA
FT                   SGSFDYRVTAAAGNTTLDRIIHAVEQAQGARAPTQRFIDRFSRIYTPAVVGLAVLVALA
FT                   PPLLLGHAWLDSVYRALALLIIACPCALVISTPVSVVSGLTAAARRGILIKGGVYLEEG
FT                   RKLRWLALDKTGTLTQGKPVQTDLELLHDASAGGRPALRAAVSLAARSDHPVSRALAQA
FT                   DHALDAPLDEVNGFAALPGRGVQGEIGGERFQLGNRRLMRELGVSTPDIEARIDAYEAA
FT                   GKTAIALADGQRVLLLAAVADTLKASSAAAVADLHRLGVRTLMLTGDNTRAAQAVAAQA
FT                   GIDEARGDLLPQDKLDAVEAKLDPALRVGMVGDGINDAPALARADIGFAMGAAGTGTAI
FT                   ETADVALMDDDLRKIGTFVRLSRATHRILTQNIVLALGIKAVFLVLAMAGQATLWMAVF
FT                   ADVGASLLVVANGLRLLRAGRHQAS"
FT   misc_feature    complement(join(106986..107051,107064..107129,
FT                   107976..108041,108087..108152,108705..108770))
FT                   /note="5 probable transmembrane helices predicted for
FT                   BP2722 by TMHMM2.0 at aa 175-197, 381-403, 418-440, 722-744
FT                   and 748-770"
FT   misc_feature    complement(107229..107915)
FT                   /note="HMMPfam hit to PF00702, haloacid dehalogenase-like
FT                   hydrolase"
FT   misc_feature    complement(107232..107300)
FT                   /note="ScanRegExp hit to PS01229, Hypothetical cof family
FT                   signature 2."
FT   misc_feature    complement(107559..107582)
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   misc_feature    complement(107877..107897)
FT                   /note="ScanRegExp hit to PS00154, E1-E2 ATPases
FT                   phosphorylation site."
FT   misc_feature    complement(107925..108593)
FT                   /note="HMMPfam hit to PF00122, E1-E2 ATPase"
FT   CDS             109378..109812
FT                   /transl_table=11
FT                   /locus_tag="BP2723"
FT                   /product="putative MerR-family transcriptional regulator"
FT                   /note="Similar to Pseudomonas putida MerR-family response
FT                   regulator CadR TR:AAK48830 (EMBL:AF333961) (147 aa) fasta
FT                   scores: E(): 8e-24, 51.72% id in 145 aa, and to Haemophilus
FT                   influenzae Zn ZntR or Hi1623 SW:ZNTR_HAEIN (P45277) (135
FT                   aa) fasta scores: E(): 4.6e-17, 46.61% id in 118 aa"
FT                   /db_xref="GOA:Q7VVE7"
FT                   /db_xref="HSSP:1Q06"
FT                   /db_xref="InterPro:IPR015358"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVE7"
FT                   /protein_id="CAE43000.1"
FT                   /translation="MKIGELARTAGTTVETVRYYEKEGLLPAPERGLNNYRSYGEAHVE
FT                   RLRLIRNCRALDMTQDEIRTVLALADNHEAGCAPINQVFDEHIAHVDARIAELTQLKAQ
FT                   LGELRQRCASARPDAEDCGILHGLSEMQVEERPERHTHLG"
FT   misc_feature    109378..109443
FT                   /note="Predicted helix-turn-helix motif with score 1885
FT                   (+5.61 SD) at aa 1-22, sequence MKIGELARTAGTTVETVRYYEK"
FT   misc_feature    109387..109494
FT                   /note="HMMPfam hit to PF00376, Bacterial regulatory
FT                   proteins, merR family"
FT   repeat_region   109809..109840
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   109809..110861
FT   CDS             109911..110861
FT                   /transl_table=11
FT                   /locus_tag="BP2724"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TT97"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TT97"
FT                   /protein_id="CAE43001.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHT"
FT   misc_feature    110169..110234
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   misc_feature    110292..110825
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   repeat_region   complement(110834..110861)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(110858..111652)
FT                   /transl_table=11
FT                   /locus_tag="BP2725"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Caulobacter crescentus formiminoglutamase
FT                   Cc0958 TR:Q9A9M0 (EMBL:AE005772) (271 aa) fasta scores:
FT                   E(): 8e-43, 45.72% id in 269 aa and to Pseudomonas
FT                   aeruginosa N-formylglutamate amidohydrolase HutG or Pa5091
FT                   TR:Q9HU92 (EMBL:AE004922) (266 aa) fasta scores: E():
FT                   7.3e-41, 45.86% id in 266 aa"
FT                   /db_xref="InterPro:IPR007709"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVE6"
FT                   /protein_id="CAE43002.1"
FT                   /translation="MSTLYTLTRGDAPLVVNIPHGGTWVPAELRPLMQAEALGVPDTDW
FT                   HVDRLYDFVRARGVTLMAATHSRYVIDLNRDPDGGVLYPGASNTELCPTTRFDGGPVWK
FT                   DEAAGHLLLDVAARRRQYFDPYHAQLAAELARVQARHGYAVLLDGHSIISHCARFFDGK
FT                   LPDLNLGTADGASCPPGLQQAAAQALQADGFTAAVNGRFKGGWITRHYGRPAEGYHALQ
FT                   LEMALSAYMTEQAPFHWQPERAEPLRQVLETLVAALLAWRAA"
FT   CDS             complement(111684..112388)
FT                   /transl_table=11
FT                   /locus_tag="BP2726"
FT                   /product="putative oxidoreductase"
FT                   /note="Similar to many inculding several proposed
FT                   Prokaryotic and Eukaryotic acyl carrier proteins: Rhizobium
FT                   loti 3-oxoacyl-acyl carrier protein reductase Mll1830
FT                   TR:Q98JQ5 (EMBL:AP002998) (234 aa) fasta scores: E():
FT                   6.3e-55, 64.53% id in 234 aa and Cuphea lanceolata
FT                   3-oxoacyl-[acyl-carrier protein] reductase, chloroplast
FT                   precursor Clkr27 SW:FABG_CUPLA (P28643) (320 aa) fasta
FT                   scores: E(): 1.1e-17, 32.52% id in 246 aa 72.22% id in 234
FT                   aa"
FT                   /db_xref="GOA:Q7VVE5"
FT                   /db_xref="HSSP:1FJH"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVE5"
FT                   /protein_id="CAE43003.1"
FT                   /translation="MSTEKTAIVTAGGSGMGAAAARRLAADGFRVAILSASGKGEALAA
FT                   ELGGLGMTGSNLEPADMQALVDATLQRWGRIDAVVNSAGHGPKGALLEIDDAGWHAGMD
FT                   YYLLNVVRIARLVTPVMREQGGGSIVNISTYATFEPEAAFPTSGVLRAGLAAFAKLYAD
FT                   QYAADNVRMNNVLPGFIDSLPEKEDRRARIPMSRYGLAEEVADLIAFLASSQSSYITGQ
FT                   NIRIDGGITRSV"
FT   misc_feature    complement(111711..111803)
FT                   /note="HMMPfam hit to PF00678,"
FT   misc_feature    complement(111840..112376)
FT                   /note="HMMPfam hit to PF00106, short chain dehydrogenase"
FT   CDS             complement(112463..113263)
FT                   /transl_table=11
FT                   /locus_tag="BP2727"
FT                   /product="exported SurF1-family protein"
FT                   /note="Similar to many SurF1-family proteins including:
FT                   Caulobacter crescentus Cc1769 TR:Q9A7F4 (EMBL:AE005851)
FT                   (225 aa) fasta scores: E(): 9.8e-41, 57.01% id in 228 aa
FT                   and Rhizobium meliloti Smb21490 TR:CAC49719 (EMBL:AL603646)
FT                   (251 aa) fasta scores: E(): 4.2e-23, 46.36% id in 179 aa"
FT                   /db_xref="InterPro:IPR002994"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVE4"
FT                   /protein_id="CAE43004.1"
FT                   /translation="MTHPTQQNAAGGREPAPTRRPRGAATLIILAALAAALFAGACALG
FT                   VWQIHRLAWKRNLIAQVETRAHAPATPAPVPADWPGLSNANAEYRRIAASGTWHYAGQT
FT                   LVQAATELGSGYWVMTPLRLDGGGTVLVNRGFVLPEWRRQQSAGDAARPDAPARVEGLL
FT                   RMGEPAGGFLRENKPAAELWYSRDLPAIAARRGLGEVAPYFIDADAAAGAPRNPAQAPV
FT                   GGLTVLSFPNNHLGYAITWFGLAAMVLAGAAIVARHELRARRRG"
FT   misc_feature    complement(112466..112750)
FT                   /note="HMMPfam hit to PF02104, SURF1 family"
FT   misc_feature    complement(join(112496..112561,113117..113182))
FT                   /note="2 probable transmembrane helices predicted for
FT                   BP2727 by TMHMM2.0 at aa 27-49 and 234-256"
FT   misc_feature    complement(112859..113134)
FT                   /note="HMMPfam hit to PF02104, SURF1 family"
FT   misc_feature    complement(113138..113170)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    complement(113141..113263)
FT                   /note="Signal peptide predicted for BP2727 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.842) with cleavage site
FT                   probability 0.633 between residues 41 and 42"
FT   CDS             complement(113260..113667)
FT                   /transl_table=11
FT                   /locus_tag="BP2728"
FT                   /product="cytochrome ubiquinol oxidase subunit IV"
FT                   /note="Similar to Escherichia coli cytochrome O ubiquinol
FT                   oxidase protein CyoD or B0429 or Z0532 or Ecs0483
FT                   SW:CYOD_ECOLI (P18403) (109 aa) fasta scores: E(): 1.7e-18,
FT                   54.71% id in 106 aa and to Rhizobium loti cytochrome O
FT                   ubiquinol oxidase subunit IV Mlr6849 TR:Q987Y8
FT                   (EMBL:AP003010) (125 aa) fasta scores: E(): 1.4e-28, 63.41%
FT                   id in 123 aa"
FT                   /db_xref="GOA:Q7VVE3"
FT                   /db_xref="InterPro:IPR014210"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVE3"
FT                   /protein_id="CAE43005.1"
FT                   /translation="MSERTEHAADLPPPHGAGHHHEDDDGPHGTLASYLTGFVLAAILT
FT                   AIPFWLVMDGVFASSRTTALVILAFAVVQIVVHLVYFLHMDAKSESGWNMLALIFTLVL
FT                   VVITLSGSIWIMYHLNSNMMPMSVHDVRNMP"
FT   misc_feature    complement(join(113317..113382,113422..113478,
FT                   113509..113574))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BP2728 by TMHMM2.0 at aa 31-53, 63-82 and 95-117"
FT   CDS             complement(113664..114305)
FT                   /transl_table=11
FT                   /locus_tag="BP2729"
FT                   /product="cytochrome ubiquinol oxidase subunit III"
FT                   /note="Similar to Escherichia coli cytochrome O ubiquinol
FT                   oxidase subunit III CyoC or B0430 SW:CYOC_ECOLI (P18402)
FT                   (204 aa) fasta scores: E(): 1.4e-45, 59.89% id in 187 aa
FT                   and Rhizobium meliloti putative cytochrome O ubiquinol
FT                   oxidase chain III protein TR:CAC49717 (EMBL:AL603646) (210
FT                   aa) fasta scores: E(): 9.6e-60, 69.48% id in 213 aa. Also
FT                   similar to BP2931, 57.310% identity in 171 aa overlap"
FT                   /db_xref="GOA:Q7VVE2"
FT                   /db_xref="InterPro:IPR014206"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVE2"
FT                   /protein_id="CAE43006.1"
FT                   /translation="MSEPTATTLPPSAAPDPERLFYVPGEHHPKNGTLLGFWVYLMSDC
FT                   LVFACLFATYGVVGRNYDGGPTGAELFDLPLVAVNTSLLLLSSITYGFAMLEMRRQRIG
FT                   ATQAWLAVTGLLGAGFLGLELYEFAHLIHQGAGPQRSAFLSAFFTLVGTHGLHVTFGIV
FT                   WLVTLMVQVARHGLIPENRRRLMCLSMFWHFLDLIWVGVFTFVYLMGVLP"
FT   misc_feature    complement(join(113673..113738,113802..113867,
FT                   113913..113978,114018..114083))
FT                   /note="4 probable transmembrane helices predicted for
FT                   BP2729 by TMHMM2.0 at aa 33-55, 68-90, 105-127 and 148-170"
FT   misc_feature    complement(113673..114173)
FT                   /note="HMMPfam hit to PF00510, Cytochrome c oxidase subunit
FT                   III"
FT   CDS             complement(114298..116298)
FT                   /transl_table=11
FT                   /locus_tag="BP2730"
FT                   /product="cytochrome ubiquinol oxidase subunit I"
FT                   /note="Similar to Escherichia coli ubiquinol oxidase
FT                   polypeptide I CyoB or B0431 or Z0534 or Ecs0485
FT                   SW:CYOB_ECOLI (P18401) (663 aa) fasta scores: E(): 1e-175,
FT                   65.74% id in 648 aa. Also similar to BP2932 (65.284%
FT                   identity in 651 aa overlap), and to BP3743 (42.636%
FT                   identity in 516 aa overlap)"
FT                   /db_xref="GOA:Q7VVE1"
FT                   /db_xref="HSSP:1FFT"
FT                   /db_xref="InterPro:IPR014207"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVE1"
FT                   /protein_id="CAE43007.1"
FT                   /translation="MTDQPDQTLLLGRLSWEAIPYHEPILLVTFIVVALGGIALLGAIT
FT                   YMRAWGYLWREWFTSIDHKKIGIMYVVLGIVMLLRGFADAIMMRLQQAIAFGDNLGYLP
FT                   PHHYDQIFTAHGVIMIFFVAMPLVTGLMNYIVPLQIGARDVAFPFLNNFSFWMTATGAV
FT                   LVMMSLFVGEFARTGWLAYPPLSGILHSPDVGVDYYIWTLQIAGVGTLLSGVNLLVTIV
FT                   KMRAPGMTLMRMPVFTWTALCTNILIVAAFPVLTAVLALLSMDRYVGTNFFTADGGGNA
FT                   MMYVNLVWIWGHPEVYILILPAFGIFSEVVATYCRKRLFGYASMVYATVVITVLSYLVW
FT                   LHHFFTMGSGASVNSFFGITTMIISIPTGAKIFNWLFTMYRGRIHFEVPMLWTLGFMVT
FT                   FVIGGMTGVLLAVPPADFALHNSLFLIAHFHNVIIGGVLFGLMAGITYWFPKAFGYRLD
FT                   PFWGKCSFWFWLVGFYLAFMPLYVLGLMGVTRRVNHFEDASLQIWFQAAALGALLIALG
FT                   IASFLIQLVVSYRRREALRDDTGDPWDGRTLEWSTSSPPPAYNFAFTPRVHDLDAWWQM
FT                   KQYGYARPLQGFVPIHMPSNTWAGIVLTGLSGVLGFALIWHMWPLVVLAFAALIGVTIA
FT                   HTFNYQRDHYVPAEEVVRCEAARTALLSRHV"
FT   misc_feature    complement(join(114394..114459,114472..114537,
FT                   114724..114789,114835..114900,114964..115029,
FT                   115060..115125,115165..115230,115276..115341,
FT                   115363..115428,115507..115572,115633..115698,
FT                   115786..115851,115891..115956,116035..116100,
FT                   116161..116226))
FT                   /note="15 probable transmembrane helices predicted for
FT                   BP2730 by TMHMM2.0 at aa 31-53, 73-95, 121-143, 156-178,
FT                   207-229, 249-271, 297-319, 326-348, 363-385, 398-420,
FT                   430-452, 473-495, 510-532, 594-616 and 620-642"
FT   misc_feature    complement(114757..116133)
FT                   /note="HMMPfam hit to PF00115, Cytochrome C and Quinol
FT                   oxidase polypeptide I"
FT   misc_feature    complement(115270..115434)
FT                   /note="ScanRegExp hit to PS00077, Heme-copper oxidase
FT                   catalytic subunit, copper B binding region signature.
FT                   Confirmed by InterPro eMOTIF pattern match."
FT   CDS             complement(join(116356..116952,116954..117322))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2731"
FT                   /product="putative ubiquinol oxidase subunit II
FT                   (pseudogene)"
FT                   /note="Pseudogene. This CDS appears to have a frameshift
FT                   mutation following codon 123. The frameshift occurs within
FT                   a tract of (C)3. The sequence has been checked and believed
FT                   to be correct. Similar to Escherichia coli ubiquinol
FT                   oxidase polypeptide II precursor CyoA or B0432
FT                   SW:CYOA_ECOLI (P18400) (315 aa) fasta scores: E(): 6.2e-32,
FT                   47.76% id in 291 aa. Also similar to BP2933, 50.000%
FT                   identity (52.107% ungapped) in 272 aa overlap."
FT                   /db_xref="PSEUDO:CAE43008.1"
FT   variation       complement(116952..116954)
FT                   /note="(C)3 in pertussis; (C)2 in parapertussis and
FT                   bronchiseptica"
FT   misc_feature    complement(join(117005..117070,117131..117196,
FT                   117242..117301))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BP2731 by TMHMM2.0 at aa 7-27, 42-64 and 84-106"
FT   misc_feature    complement(117242..117322)
FT                   /note="Signal peptide predicted for BP2731 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.908) with cleavage site
FT                   probability 0.462 between residues 27 and 28"
FT   CDS             117559..118890
FT                   /transl_table=11
FT                   /locus_tag="BP2732"
FT                   /product="putative membrane transport protein"
FT                   /note="Similar to many proposed membrane transport proteins
FT                   e.g. Rhizobium meliloti putative metabolite transport
FT                   protein Smb21486 TR:CAC49714 (EMBL:AL603646) (431 aa) fasta
FT                   scores: E(): 4.3e-91, 58.21% id in 414 aa"
FT                   /db_xref="GOA:Q7VVE0"
FT                   /db_xref="InterPro:IPR005828"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVE0"
FT                   /protein_id="CAE43009.1"
FT                   /translation="MSTTTQHPGYAPATPHPGSSGGASHSHVAPGEIAVGVVIGRASEY
FT                   FDFFVFGIACVLVFPSVFFPFESELDGMLWAFVIFSFAFIARPFGTALSMAVQRRWGRG
FT                   AKLTAALFLLGTATCGMAFLPGYDAIGMYAILLLSLFRCLQGLALGGSWDGLPSLLALN
FT                   APAGRRGWYAMLGQLGAPIGFMIASALFLFLISTLARDDFLDWGWRYPFFVAFAINVVA
FT                   LFARLRLVVTEEYTQLMEEGELEPIRTTEMLREQGYNMLIGAFAALASYALFHLVTVFP
FT                   LSWIAAGASQMSGDVLVVQIAGAALAIVCTLASGWLADRIGRRTTLGLMALLIGVFALF
FT                   TPWLLGGGPLAQDAFILIGFALLGLSYGQASGTVTANFIRRFRYTGAALTADMAWLLGA
FT                   AFAPLVALGLSARFGLVAVSVYLLSGVVCTLLALRVNRLLETRD"
FT   misc_feature    117655..118875
FT                   /note="HMMPfam hit to PF00083, Sugar (and other)
FT                   transporter"
FT   misc_feature    join(117700..117759,117772..117840,117877..117930,
FT                   117943..118011,118069..118137,118180..118248,
FT                   118348..118416,118444..118512,118531..118599,
FT                   118627..118695,118714..118782,118795..118863)
FT                   /note="12 probable transmembrane helices predicted for
FT                   BP2732 by TMHMM2.0 at aa 48-67, 72-94, 107-124, 129-151,
FT                   171-193, 208-230, 264-286, 296-318, 325-347, 357-379,
FT                   386-408 and 413-435"
FT   misc_feature    118498..118551
FT                   /note="ScanRegExp hit to PS00216, Sugar transport proteins
FT                   signature 1."
FT   CDS             complement(118887..119837)
FT                   /transl_table=11
FT                   /locus_tag="BP2733"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTA3"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTA3"
FT                   /protein_id="CAE43010.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS"
FT   repeat_region   complement(118897..119939)
FT   misc_feature    complement(118923..119456)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   misc_feature    complement(119514..119579)
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   repeat_region   complement(119908..119939)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(join(119936..120616,120616..121437))
FT                   /transl_table=11
FT                   /locus_tag="BP2734"
FT                   /product="putative chelatase (Pseudogene)"
FT                   /note="Pseudogene. This CDS appears to have a frameshift
FT                   mutation following codon 274. The frameshift occurs within
FT                   a polymeric tract of (C)5. The sequence has been checked
FT                   and believed to be correct. Similar to many including:
FT                   Neisseria meningitidis putative chelatase Nma2080 TR:Q9JSY3
FT                   (EMBL:AL162758) (498 aa) fasta scores: E(): 2.2e-82, 55.66%
FT                   id in 503 aa and to Xylella fastidiosa competence related
FT                   protein Xf1179 TR:Q9PE49 (EMBL:AE003951) (506 aa) fasta
FT                   scores: E(): 6.9e-76, 52.57% id in 504 aa"
FT                   /db_xref="GOA:Q7VVD9"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVD9"
FT                   /protein_id="CAE43011.1"
FT                   /translation="MTLAVLASRAIAGWQAPAVRVETHLGSGLPAFAIVGLPDVEVRES
FT                   RERVRAAIQNSGFDFPPGRITVNLSPADLPKASARFDLPIALGILLASGQVAASAAQTA
FT                   ALPDCVWAAELSLSGALVPLAAPLALALAVAREQPGATLVLPAGSAAVAAWVPGIRVLA
FT                   AHTLGEAAAYLAGHAELAPAERRSWPEAEPGPCLSDVRGQPAARRALEVAAAGGHSLLM
FT                   CGPPGAGKSMLAQRLPGLLPPLEQRQALEVAAIAGAGGAPEVLRGQPPFRAPHHSASAA
FT                   ALVGSGARPRPGEISLAHHGVLFLDELPEFERRALESLREPLETGKVVISRALHSVEYP
FT                   AVFQLVAAMNPCPCGWRGHASKACRCTPDQVRRYAARVSGPLVDRIDLWIELPATEPQW
FT                   LAEPPGEPSLPVRERVVRCRQRQLARQGCLNAKLSGPALDAHCALGAAARTLQQQAMRR
FT                   LGGSARAAHRALRVARTLADLAHEPEIGAAHIAEAVQYRRPA"
FT   misc_feature    complement(join(120395..120616,120616..121383))
FT                   /note="HMMPfam hit to PF01078, Magnesium chelatase, subunit
FT                   ChlI"
FT   variation       complement(120616..120620)
FT                   /note="(C)5 in pertussis; (C)6 in parapertussis and
FT                   bronchiseptica"
FT   misc_feature    complement(120745..120768)
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   CDS             complement(121544..121810)
FT                   /transl_table=11
FT                   /locus_tag="BP2735"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to several e.g. Neisseria meningitidis
FT                   hypothetical protein Nmb0404 TR:Q9K0Z7 (EMBL:AE002396) (106
FT                   aa) fasta scores: E(): 3.7e-09, 44.31% id in 88 aa"
FT                   /db_xref="InterPro:IPR007475"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVD8"
FT                   /protein_id="CAE43012.1"
FT                   /translation="MNRTQQWMEDLQKNISDLIARSPAADVERNVRAMMTQTFARLDLI
FT                   TREEFEVQVDLLARARTRVDQLSAQVQQLEARLAALEAGKPQA"
FT   CDS             122518..122856
FT                   /transl_table=11
FT                   /locus_tag="BP2736"
FT                   /product="nitrogen regulatory protein P-II"
FT                   /note="Similar to many e.g. Escherichia coli nitrogen
FT                   regulatory protein P-II 2 GlnK or B0450 or Z0562 or Ecs0504
FT                   SW:GLNK_ECOLI (P38504) (112 aa) fasta scores: E(): 1.4e-27,
FT                   69.64% id in 112 aa. Note this CDS is also highly similar
FT                   to the upstrean CDS BP2699 fasta scores: E(): 3.6e-29 75%
FT                   identity in 112 aa."
FT                   /db_xref="GOA:Q7VVD7"
FT                   /db_xref="HSSP:1GNK"
FT                   /db_xref="InterPro:IPR015867"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVD7"
FT                   /protein_id="CAE43013.1"
FT                   /translation="MKLVIAIIKPFKLDEVRMALSDIGVQGLTVTEVKGFGRQKGHTEL
FT                   YRGAEYAVDFLPKLRVEAAVPDHLVDQVIEAIEQSARTGKIGDGKIFTAPLEEVIRIRT
FT                   GESGEAAL"
FT   misc_feature    122518..122853
FT                   /note="HMMPfam hit to PF00543, Nitrogen regulatory protein
FT                   P-II"
FT   misc_feature    122653..122670
FT                   /note="ScanRegExp hit to PS00496, P-II protein urydylation
FT                   site."
FT   CDS             join(122882..123262,123264..123581,123583..124122)
FT                   /pseudo
FT                   /transl_table=11
FT                   /gene="amtB"
FT                   /locus_tag="BP2737"
FT                   /product="probable ammonium transporter (Pseudogene)"
FT                   /note="Pseudogene. This CDS appears to have two frameshift
FT                   mutations following codons 127 and 233. The sequence has
FT                   been checked and believed to be correct. Similar to
FT                   Escherichia coli probable ammonium transporter AmtB or
FT                   B0451 or Z0563 or Es0505 SWALL:AMTB_ECOLI (SWALL:P37905)
FT                   (428 aa) fasta scores: E(): 1e-70, 58.88% id in 411 aa, and
FT                   to Xanthomonas campestris ammonium transporter AmtB
FT                   SWALL:Q9RBJ9 (EMBL:AF182396) (491 aa) fasta scores: E():
FT                   2.1e-88, 62.31% id in 414 aa"
FT                   /db_xref="PSEUDO:CAE43014.1"
FT   misc_feature    122882..122956
FT                   /note="Signal peptide predicted for BP2737 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.697) with cleavage site
FT                   probability 0.630 between residues 25 and 26"
FT   misc_feature    join(122900..123262,123264..123581,123583..124113)
FT                   /note="HMMPfam hit to PF00909, Ammonium Transporter Family"
FT   misc_feature    join(122909..122977,122990..123058,123176..123244,
FT                   123263..123331,123389..123448,123485..123544,
FT                   123587..123655,123674..123733,123743..123802,
FT                   123839..123895,123953..124021)
FT                   /note="11 probable transmembrane helices predicted for
FT                   BP2737 by TMHMM2.0 at aa 10-32, 37-59, 99-121, 128-150,
FT                   170-189, 202-221, 236-258, 265-284, 288-307, 320-338 and
FT                   358-380"
FT   variation       123262..123263
FT                   /note="GC in pertussis; G(-) in parapertussis and
FT                   bronchiseptica"
FT   misc_feature    123378..123455
FT                   /note="ScanRegExp hit to PS01219, Ammonium transporters
FT                   signature. Confirmed by InterPro eMOTIF pattern match."
FT   variation       123580..123586
FT                   /note="(C)7 in pertussis; CCACCC in parapertussis and
FT                   bronchiseptica"
FT   CDS             complement(join(124185..126521,126526..126897,
FT                   126899..127171))
FT                   /transl_table=11
FT                   /gene="bapC"
FT                   /locus_tag="BP2738"
FT                   /product="autotransporter (pseudogene)"
FT                   /note="Previously characterised as Bordetella pertussis
FT                   putative autotransporter BapC TR:O86044 (EMBL:AF081494)
FT                   (759 aa) fasta scores: E(): 0, 100% id in 759 aa. Also
FT                   highly similar to Bordetella parapertussis pertactin
FT                   precursor an agglutinogen that binds Eukaryotic cells, Prn
FT                   SW:PERT_BORPA (P24328) (922 aa) fasta scores: E(): 6.6e-75,
FT                   44.29% id in 806 aa."
FT                   /db_xref="GOA:Q7VVD6"
FT                   /db_xref="HSSP:1DAB"
FT                   /db_xref="InterPro:IPR006315"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVD6"
FT                   /protein_id="CAE43015.1"
FT                   /translation="MNDRKSNSMSPAARYLRFGVVAVAGVAAGALPSSDVDAQAAPAAA
FT                   EVAKIEALSDADIYSDYEHEHGIVMTPDGKDDYISYRSAESGRPKPPPPLSNFKPLGND
FT                   VVAERIRVEVHGDETLGVYVDSEHRSLTVRDSTIDAYGKPPSVDSPDYYGAAAVYAGTL
FT                   NIENSTVHHNYAAQPFEDAVGVGVTSLGDKAILNVTDSEVSGARGAVIGWGGEATFTDS
FT                   VLRGSAFGLYAEMCDTCRDDDGTSPSIRVQGGVVQGGMGANNVAVVATGSGKVAIENAE
FT                   LLGASGMYATFGAQVDMKGGRILAHNTNILGSQGYADGPYGGVVVTEDGQVNLEGAKVS
FT                   ATGLGAAGLWLLGDKDTSPRASLRNTDVHGEVAAIALGFNGEANISGGSLSVEDGAVLT
FT                   TLTPDAVEYYYDYALSMEHLPADAPLTPVRVTLSDGARASGETLIAHGGLLPMTLRLSS
FT                   GVDARGDIVTLPPSAPPDSAEQPDAEPEPDAELEPDAAAQSDAKANARVMAQVDGGEPV
FT                   AVPIPAPSHPDAPIDVFIDSGAQWRGMTKTVNALRIEDGTWTVTGSSTVNSLHLQAGKV
FT                   AYATPAESDGEFKHLRVKTLSGSGLFEMNASADLSDGDLLVVSDEASGQHKVLVRGAGT
FT                   EPTGVESLTLVELPEGSQTKFTLANRGGVVDAGAFRYRLTPDNGVWGLERTSQLSAVAN
FT                   AALNTGGVGAASSIWYAEGNALSKRLGELRLDPGAGGFWGRTFAQKQQLDNKAGRRFDQ
FT                   KVYGFELGADHAIAGQQGRWHVGGLLGYTRARRSFIDDGAGHTDSAHIGAYAAYVADNG
FT                   FYFDSTLRASRFENDFTVTATDAVSVRGKYRANGVGATLEAGKRFTLHDGWFVEPQSEV
FT                   SLFHASGGTYRAANNLSVKDEGGTSAVLRLGLAAGRRIDLGKDRVIQPYATLSWLQEFK
FT                   GVTTVRTNGYGLRTDLSGGRAELALGLAAALGRGHQLYTSYEYAKGNKLTLPWTFHLGY
FT                   RYTW"
FT   variation       complement(126523..126533)
FT                   /note="(G)11 in pertussis; (G)7 in parapertussis and
FT                   bronchiseptica"
FT   variation       complement(126888..126901)
FT                   /note="phase variable poly C"
FT   CDS             complement(127410..128012)
FT                   /transl_table=11
FT                   /locus_tag="BP2741"
FT                   /product="putative TetR-family transcriptional regulator"
FT                   /note="Similar to many putative transcriptional regulators
FT                   e.g. Rhizobium loti transcriptional regulatory protein
FT                   Mlr4117 TR:Q98ER4 (EMBL:AP003003) (205 aa) fasta scores:
FT                   E(): 3.5e-42, 63.21% id in 193 aa"
FT                   /db_xref="GOA:Q7VVD5"
FT                   /db_xref="InterPro:IPR012287"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVD5"
FT                   /protein_id="CAE43016.1"
FT                   /translation="MSRKSAPSSTAAPAPKLAADRIRATARELFYREGIRAVGVDAIVS
FT                   AAGVTKPSLYRSFSSKDELAASYLRDYETEFWSRFDAGAQRHPDDPRAQLRLYLESLAE
FT                   RAANAGPYRGCGLSNAAVEYPDPDHPARLVAEAHKRELRRRLIDMARRMGAREPEVLGD
FT                   GLMLLIEGAFISGQLFHGDGPARHVARLADRLIEASL"
FT   misc_feature    complement(127809..127949)
FT                   /note="HMMPfam hit to PF00440, Bacterial regulatory
FT                   proteins, tetR family"
FT   CDS             128109..129398
FT                   /transl_table=11
FT                   /locus_tag="BP2742"
FT                   /product="putative membrane transport protein"
FT                   /note="Similar to many putative membrane transport proteins
FT                   e.g. Rhizobium loti transmembrane transport protein Mll4118
FT                   TR:Q98ER5 (EMBL:AP003003) (446 aa) fasta scores: E():
FT                   4.8e-105, 66.9% id in 414 aa"
FT                   /db_xref="InterPro:IPR011701"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVD4"
FT                   /protein_id="CAE43017.1"
FT                   /translation="MSITRLPPPFRHLGQKYAFVVVAVIFFSLLVSAGLRSTPSVLIVP
FT                   LEQAFGWSRSTISLAAAIGIFLYGLAGPFAAAAMEHFGLRRVLIGALLLMAASSAASAF
FT                   MTESWHLLLTWGVFSGIGSGAVAVVLGATIVNRWFTTRRGLMMGLLTASTATGNLLFLP
FT                   VLAALAASGDWTRVVWAVAAGAALMAPLAWWLVPDRPADVGLRSYGSAPDAPEPSVAPR
FT                   TGLLAATFGALRRAARTRTFWYLFATFFVCGFTTNGLVGTHLIALCGDHGIAEVQAAGL
FT                   LALMGIFDLVGTTASGWLTDRYDPRRLLFVYYSLRGLSLMYLPYSDFSFYSLSLFAIFF
FT                   GLDWIATVPPTLRLTTEAFGDRDAPIVFGWIVAGHQLGAASAAWMGGVVRETTGSYLMA
FT                   FVLAGSTGLIAAVIALMINRKPRPTALAEA"
FT   misc_feature    128109..128207
FT                   /note="Signal peptide predicted for BP2742 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.873) with cleavage site
FT                   probability 0.731 between residues 33 and 34"
FT   misc_feature    join(128271..128339,128358..128426,128439..128507,
FT                   128541..128609,128637..128696,128841..128909,
FT                   128937..129005,129066..129134,129204..129272,
FT                   129291..129359)
FT                   /note="11 probable transmembrane helices predicted for
FT                   BP2742 by TMHMM2.0 at aa 13-35, 55-77, 84-106, 111-133,
FT                   145-167, 177-196, 245-267, 277-299, 320-342, 366-388 and
FT                   395-417"
FT   CDS             complement(129456..130187)
FT                   /transl_table=11
FT                   /locus_tag="BP2743"
FT                   /product="putative ABC transport protein, ATP-binding
FT                   component"
FT                   /note="Similar to many putative membrane transport proteins
FT                   e.g. Thermotoga maritima branched chain amino acid ABC
FT                   transporter, ATP-binding protein Tm1139 TR:Q9X0M3
FT                   (EMBL:AE001771) (239 aa) fasta scores: E(): 9.5e-43, 55.5%
FT                   id in 236 aa"
FT                   /db_xref="GOA:Q7VVD3"
FT                   /db_xref="HSSP:1JI0"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVD3"
FT                   /protein_id="CAE43018.1"
FT                   /translation="MTASQALLELRGLQVAYGGIRAVRGIDLRVDPGELVCLIGANGAG
FT                   KSTTLRAICGLVPLAGGQVLYDGQSIGGQPSFALVRKGLVMVPEGRGIFGQLTIEENLA
FT                   MGAYVRRDAAQVRQDTERVFTLFPRLAERRRQAAGTLSGGEQQMVAMGRAMIARPRLLL
FT                   LDEPSMGLAPLMVDKVFEVVRTIAAEGVTILLIEQNARLALEHADRGYVMESGEITLSG
FT                   PAREMLHDPKVRAAYLGEVEA"
FT   misc_feature    complement(129540..130091)
FT                   /note="HMMPfam hit to PF00005, ABC transporter"
FT   misc_feature    complement(129723..129767)
FT                   /note="ScanRegExp hit to PS00211, ABC transporters family
FT                   signature."
FT   misc_feature    complement(130047..130070)
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   CDS             complement(130184..130987)
FT                   /transl_table=11
FT                   /locus_tag="BP2744"
FT                   /product="putative ABC transport protein, ATP-binding
FT                   component"
FT                   /note="Similar to many putative membrane transport proteins
FT                   e.g. Deinococcus radiodurans branched-chain amino acid ABC
FT                   transporter, ATP-binding protein Dr2119 TR:Q9RSK5
FT                   (EMBL:AE002047) (259 aa) fasta scores: E(): 2.5e-44, 57.83%
FT                   id in 249 aa"
FT                   /db_xref="GOA:Q7VVD2"
FT                   /db_xref="HSSP:1G6H"
FT                   /db_xref="InterPro:IPR018170"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVD2"
FT                   /protein_id="CAE43019.1"
FT                   /translation="MSRILHAQGLGKRFGGLRALSEVSFDIEAGEIYGLIGPNGAGKTT
FT                   LFNVLTGLYVPEEGQCEFNGMSLIGKKPHEVAAAGLARTFQNIRLFANLSAIENVMIGR
FT                   HVRTHAGVLGAVLRTRAERVEEAAIERRAQELLEYVGIGHRANDVARSLPYGDQRRLEI
FT                   ARALATDPRLLALDEPAAGMNASETVVLRQLIEKIRTDGVTVLLIEHDMKLVMGLCDRV
FT                   LVLEYGKVLSMGRPAEVQRDPKVIEAYLGAGAAHDPELHTTEQAP"
FT   misc_feature    complement(130304..130900)
FT                   /note="HMMPfam hit to PF00005, ABC transporter"
FT   misc_feature    complement(130856..130879)
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   CDS             complement(130984..132072)
FT                   /transl_table=11
FT                   /locus_tag="BP2745"
FT                   /product="putative ABC transport protein, ATP-binding
FT                   component"
FT                   /note="Similar to many putative membrane transport proteins
FT                   e.g. Deinococcus radiodurans branched-chain amino acid ABC
FT                   transporter, permease protein dr1036 TR:Q9RVJ2
FT                   (EMBL:AE001955) (471 aa) fasta scores: E(): 2.8e-50, 48.04%
FT                   id in 358 aa"
FT                   /db_xref="GOA:Q7VVD1"
FT                   /db_xref="InterPro:IPR001851"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVD1"
FT                   /protein_id="CAE43020.1"
FT                   /translation="MTRQPNKSGLSARNLVGIALIGIVLAVLPFVLGMAGQSWVRILNF
FT                   ALLYVMLALGLNIVVGFAGLLDLGYIAFYAVGAYTWALLASPHFGLHLPFWAILPMALG
FT                   VACVFGVLLGAPTLKLRGDYLAIVTLGFGEIIRIFLNNLNAPVNITNGPQGINRIDAFK
FT                   VGDFVFGRTETILGIRFTGPEKYYYLLVLLTLLIIVVCVRLQNSRIGRAWEAIREDEIA
FT                   AKAMGINSRNIKLLAFAMGASFGGVAGALFAAMQGFVSPESFSLTESISVLCMVVLGGM
FT                   GHIPGVILGAVILAVLPEFLRAVVEPAQHLLFGAVVLDPEGIRMLLFGLAMVCVMLFRP
FT                   AGLWPSAVRKRELSSTRQGGAA"
FT   misc_feature    complement(join(131029..131094,131191..131256,
FT                   131302..131367,131461..131514,131650..131700,
FT                   131722..131787,131818..131868,131890..131955))
FT                   /note="9 probable transmembrane helices predicted for
FT                   BP2745 by TMHMM2.0 at aa 13-35, 39-61, 68-85, 95-117,
FT                   124-141, 186-204, 235-257, 272-294 and 326-348"
FT   misc_feature    complement(131029..131970)
FT                   /note="HMMPfam hit to PF02653, Branched-chain amino acid
FT                   transport system / permease component"
FT   misc_feature    complement(131968..132072)
FT                   /note="Signal peptide predicted for BP2745 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.937) with cleavage site
FT                   probability 0.363 between residues 35 and 36"
FT   CDS             complement(132069..132998)
FT                   /transl_table=11
FT                   /locus_tag="BP2746"
FT                   /product="putative ABC transport protein, inner membrane
FT                   component"
FT                   /note="Similar to many putative membrane transport proteins
FT                   including: Rhizobium meliloti probable high-affinity
FT                   branched-chain amino acid transport permease ABC
FT                   transporter protein TR:CAC47064 (EMBL:AL591790) (300 aa)
FT                   fasta scores: E(): 9.8e-43, 48.52% id in 305 aa and
FT                   Escherichia coli high-affinity branched-chain amino acid
FT                   transport system permease protein livH or B3457 or Z4827 or
FT                   Ecs4304 SW:LIVH_ECOLI (P08340) (308 aa) fasta scores: E():
FT                   1e-39, 45.09% id in 306 aa"
FT                   /db_xref="GOA:Q7VVD0"
FT                   /db_xref="InterPro:IPR001851"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVD0"
FT                   /protein_id="CAE43021.1"
FT                   /translation="MDIFTQQIINGLTLGSVYALVALGYTMVYGIIGLINFAHGDVVMI
FT                   GAMAATMVAAALVGGDPSTSAFAVLGAGLLVSVPLCMAVGWTAERVAYRPLRRAPRLAA
FT                   LITAIGVSIILQNVAMMVWGRNYLNFPQVLTPTVFEIGGARMSMLQIAIVVIAALIMGA
FT                   LLLVVHKTRLGTAMRATAQNREVAGLMGVNINTVISAAFLIGSALAAIAGMMVTTYYGV
FT                   SQYTMGFMLGLKAFTAAVLGGIGNLVGAMAGGLLLGIIESLGSGYIGDLTGGFLGSHYQ
FT                   DVFAFVVLVMVLIFRPSGLLGERVGDRA"
FT   misc_feature    complement(132084..132989)
FT                   /note="HMMPfam hit to PF02653, Branched-chain amino acid
FT                   transport system / permease component"
FT   misc_feature    complement(join(132093..132158,132219..132284,
FT                   132300..132350,132366..132431,132495..132560,
FT                   132627..132692,132741..132806,132822..132872,
FT                   132888..132953))
FT                   /note="9 probable transmembrane helices predicted for
FT                   BP2746 by TMHMM2.0 at aa 15-37, 42-59, 64-86, 102-124,
FT                   146-168, 189-211, 216-233, 238-260 and 280-302"
FT   misc_feature    complement(132522..132569)
FT                   /note="ScanRegExp hit to PS00038, Myc-type,
FT                   'helix-loop-helix' dimerization domain signature."
FT   CDS             complement(133147..134292)
FT                   /transl_table=11
FT                   /locus_tag="BP2747"
FT                   /product="putative ABC transport solute-binding protein"
FT                   /note="Similar to many putative membrane transport
FT                   solute-binding proteins including: Rhizobium meliloti
FT                   putative leucine-specific binding protein precursor
FT                   TR:CAC47059 (EMBL:AL591790) (372 aa) fasta scores: E():
FT                   3.8e-35, 36.21% id in 359 aa and Pseudomonas aeruginosa
FT                   leucine-, isoleucine-, valine-, threonine-, and
FT                   alanine-binding protein precursor BraC or Pa1074
FT                   SW:BRAC_PSEAE (P21175) (373 aa) fasta scores: E(): 4.3e-32,
FT                   33.33% id in 357 aa"
FT                   /db_xref="GOA:Q7VVC9"
FT                   /db_xref="HSSP:1USG"
FT                   /db_xref="InterPro:IPR000709"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVC9"
FT                   /protein_id="CAE43022.1"
FT                   /translation="MTLRTPIKMLAAGIAAACLAGVAQAADIKFGFAAPLTGPQSHYGE
FT                   DMQNGLTLALEEANQKGVTVGGKPAKFVLVSRDDQADPRVAVQVAQQLVDQEVNGILGH
FT                   FNSGTTIPASRVYHDAGLPQIAMATSPEYTNQQYETTFRMMTSDTQQGAAVGKFMVEKL
FT                   NAKKVAIIDDRTAYGQGLADEVEKAVKAAGGQVVRREYTTDKANDFTSILTNIKGVAPD
FT                   AIFYGGLDAQSGPMKRQLATLGLKAPLVSGEMTRSDTFIKLAGDAADGTYASLAGVPLE
FT                   KMAAGKEFAKRYEERFKKAPGVYAPYAYDGAWNMITAIEKAGSADPSKYLPELAKLSRK
FT                   GATSEHIAYDAKGDLKEVAVTIYEVKNGKWEMVETMVSQAN"
FT   misc_feature    complement(133714..134007)
FT                   /note="HMMPfam hit to PF01094, Receptor family ligand
FT                   binding region"
FT   misc_feature    complement(134218..134292)
FT                   /note="Signal peptide predicted for BP2747 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.999 between residues 25 and 26"
FT   CDS             complement(134314..135264)
FT                   /transl_table=11
FT                   /locus_tag="BP2748"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTB5"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTB5"
FT                   /protein_id="CAE43023.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI"
FT   repeat_region   134314..134345
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   complement(134314..135366)
FT   misc_feature    complement(134350..134883)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   misc_feature    complement(134941..135006)
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   repeat_region   complement(135335..135366)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(135595..139416)
FT                   /transl_table=11
FT                   /gene="putA"
FT                   /locus_tag="BP2749"
FT                   /product="bifunctional proline
FT                   oxidoreductase/transcriptional repressor"
FT                   /EC_number="1.5.99.8"
FT                   /note="Highly similar to Escherichia coli bifunctional
FT                   protein involved in proline utilisation PutA or PoaA or
FT                   B1014 SW:PUTA_ECOLI (P09546) (1320 aa) fasta scores: E():
FT                   0, 64.71% id in 1335 aa"
FT                   /db_xref="GOA:Q7VVC8"
FT                   /db_xref="HSSP:1K87"
FT                   /db_xref="InterPro:IPR016162"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVC8"
FT                   /protein_id="CAE43024.1"
FT                   /translation="MASTTLGVKVDDALRDRLKAAAQKLNCTPHWLHKQAILSYLDRIE
FT                   RGHLPAEMAHLGRDERGEDEDAGASADAMPPFFEFGQDVQPQSVLRAAITAAYRRPEPE
FT                   CVPLLLGQARVAGPEKVHAMASKLVHALWAKRSGGGVEGLIQEFSLSSQEGVALMCLAE
FT                   ALLRIPDRATRDALIRDKIVHGDWRSHMGGSQSLFVNAATWGLMITGKLVAVSSEQSLS
FT                   KALTRLIGKGGEPLVRKGVNMAMRMMGEQFVSGQTISEALANNRKMEARGFRYSYDMLG
FT                   EAATTAADAERYYAAYEQAIHAIGKAAAGRGIYEGPGISIKLSALHPRYARAQRDRVMA
FT                   ELLPRVKALTLLARQYDIGLNIDAEEADRLEISLDLLEALCFVPELDDWNGIGFVIQAY
FT                   QKRAPFVIDYVIDLAKRSRHRLMVRLVKGAYWDTEIKRAQVDGLEGYPVYTRKVYTDVA
FT                   YLACARRLLAAPEATYPQFATHNAYTLSAIYQMAGQNYYPGQYEFQCLHGMGEPLYEEV
FT                   VGPLAQGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNLIGDDSITVEQLVAD
FT                   PVEAASRIVPLGAPHEKIPLPRELYGSVQQGARANSAGLDLTNEHRLGSLSAALLASAA
FT                   TDWRAWPMLGEGDPGWDPASAVEVANPANLRDIVGHVMQATPQHVEQALRDAANAAPIW
FT                   QSTPVPERAQCLRRAAQLLEEQMQTLLGLIVREAGKSLPNAIAEVREAVDFLRYYADQA
FT                   EREFDNDTHRPLGQVLCISPWNFPLAIFTGQVAAALAAGNTVLAKPAEQTSLIAGQAVA
FT                   ILRAAGVPAGAVQLLPGRGETVGAQLVASPQVRGVMFTGSTEVARIIAGALAERLDDQG
FT                   HTIPLIAETGGQNAMVIDSSALAEQVVFDVLTSAFDSAGQRCSALRVLCLQEDSADHVL
FT                   TMLRGAMRELRVGNPDRLSVDVGPVIDAEARNGIQGHIEAMRSSGRPVDQVELAGECRY
FT                   GTFVPPTLIEIDHIGELTREVFGPVLHVLRYRRDDLDGLIEQINATGYGLTFGVHTRID
FT                   ETIARVTEQVHAGNLYVNRNIVGAVVGVQPFGGEGLSGTGPKAGGPLYMYRLLATRPAG
FT                   LPPALDPAAPMPQALALPGPTGETNTYRVEPRGAVYCVAATEAGARAQWAVVSQTGNHA
FT                   WFADTPAARAWIDGLDARLREQAALLEDSEFDEADFQAVLFEGDGDALRALNMRIAQRP
FT                   GPLVSVHGLSADALAAGASYAPDRLLAERSISVNTAAAGGNASLMTIG"
FT   misc_feature    complement(136087..137469)
FT                   /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase
FT                   family"
FT   misc_feature    complement(136666..136701)
FT                   /note="ScanRegExp hit to PS00070, Aldehyde dehydrogenases
FT                   cysteine active site."
FT   misc_feature    complement(137716..138756)
FT                   /note="HMMPfam hit to PF01619, Proline dehydrogenase"
FT   CDS             complement(139573..140241)
FT                   /transl_table=11
FT                   /locus_tag="BP2750"
FT                   /product="lipoprotein"
FT                   /note="no significant database hits"
FT                   /db_xref="InterPro:IPR005586"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVC7"
FT                   /protein_id="CAE43025.1"
FT                   /translation="MKSTVARCAPLLIATILAGCGASPPARYYTLQPPGATQAVQAGVA
FT                   AAPFMIEILPVNVPAQADQPQLMVRTGDGTVAPLYSERWSAPLPDEFRAALSDTLTREL
FT                   GAPDVQVIKPASGTPVWRVQVDVQRFDLVAGGPSLLDATWRVRPVNLVAPALVCRTRVD
FT                   VPAGGERDTAALVQAQQRGTALLARTIASAIRSQGQSAEAGGPEVQVLGCSRNDAKTEG
FT                   "
FT   misc_feature    complement(140176..140241)
FT                   /note="Signal peptide predicted for BP2750 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.942) with cleavage site
FT                   probability 0.685 between residues 22 and 23"
FT   misc_feature    complement(140182..140214)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(140246..141919)
FT                   /transl_table=11
FT                   /locus_tag="BP2751"
FT                   /product="putative membrane protein"
FT                   /note="Similar to many including: Neisseria meningitidis
FT                   (serogroup A) hypothetical integral membrane protein
FT                   Nma1929 or Nmb1671 TR:Q9JRE7 (EMBL:AL162757) (553 aa) fasta
FT                   scores: E(): 4.3e-47, 32.27% id in 567 aa and Escherichia
FT                   coli paraquat-inducible protein B PqiB SW:PQIB_ECOLI
FT                   (P43671) (546 aa) fasta scores: E(): 9.6e-37, 33.14% id in
FT                   528 aa"
FT                   /db_xref="InterPro:IPR003399"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVC6"
FT                   /protein_id="CAE43026.1"
FT                   /translation="MAESTPPPQEPGTPIAAPQIARKQKSRISWIWLVPIVAALAGLSL
FT                   VVRTIMQAGPEITILFDTAEGLEVGKTQVRYKDVNIGVVQGIHFNEDRSKVVVEAELAK
FT                   EVSNLARDGTQFWVVRPRLGISGVSGLGTLLSGAYIGVDAPPDKEGGTDRASKFEFVGL
FT                   ELPPAVTHDRAGKRFMLSATDLGSLDIGSPVYFRRIPVGRVIGYKLDDSGRVVNVEVFV
FT                   DAPNDRFVTDSTRFWNASGVDVAVNASGLKVRTQSLVSLAVGGVAFESVSARQGEPVKA
FT                   DTRFELYESETAAKANPDDQPFPIRMRFDQSIRGLTVGSPIDFQGITLGEVTRIAIDFD
FT                   NAKKRFFAVVDATVYPERIGRVFDEIRARTEASSGSHAAGQLLSIMIKYGLRAQLRTAN
FT                   LLTGQLYIVLDTFPEAPPVAFVPGDDPVIIPTIPGQLDQLQAQISSIVTKIEKIPFDQI
FT                   GTDLRATLASTAKLMNRLDKDLAPEARAVLSQARQSLVDINNMLAPDSGLPANTERAMQ
FT                   EMSRAARSLRNLADYLQTNPEALLKGRGADPIPGAGPVRN"
FT   misc_feature    complement(141767..141832)
FT                   /note="1 probable transmembrane helix predicted for BP2751
FT                   by TMHMM2.0 at aa 29-51"
FT   CDS             complement(141938..143134)
FT                   /transl_table=11
FT                   /locus_tag="BP2752"
FT                   /product="putative exported protein"
FT                   /note="Similar to Escherichia coli paraquat-inducible
FT                   protein a pqia or pqi5a or b0950 SW:PQIA_ECOLI (P43670)
FT                   (417 aa) fasta scores: E(): 8.1e-35, 36.09% id in 374 aa"
FT                   /db_xref="InterPro:IPR007498"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVC5"
FT                   /protein_id="CAE43027.1"
FT                   /translation="MTLSNWLALALAALIVFVLANAYPVASLEVQGMVQRASLLDAIRV
FT                   TWQQQHWVVAIMTGLAGFGMPLVQLMVLLWVLGPLAAGRLPVGFRGAMRFLGLLRPWSM
FT                   VQVFLLGVVVSVVKLAGMAAVKPAVGLAGFAALTVLLTILGRLSPHVLWRYAERAGLVD
FT                   VHVPRSGPGMVLTGCHVCGQVQALPAGHDDEALHHCRRCAAQLHLRKPDHLARTWALLL
FT                   AAVVFYIPANILPVMSVSSVVGDSAHTILGGVVELWEMGSWDIALIVFVASIMVPLTKL
FT                   LALSLLALTLQRGSTANLRQRTRLYQMVEFIGQWSMLDVFVVIVLAALANFQGLMEISA
FT                   GSGAASFGMVVILTMMAAMSFDPRRSWDLESAPAPHVHDALHAHSSAHGAAASDQPST"
FT   misc_feature    complement(join(142064..142129,142145..142210,
FT                   142274..142339,142418..142483,142688..142753,
FT                   142784..142840,142904..142969))
FT                   /note="8 probable transmembrane helices predicted for
FT                   BP2752 by TMHMM2.0 at aa 7-26, 55-77, 98-117, 127-149,
FT                   217-239, 265-287, 308-330 and 335-357"
FT   misc_feature    complement(143069..143134)
FT                   /note="Signal peptide predicted for BP2752 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.895 between residues 22 and 23"
FT   CDS             complement(143262..145577)
FT                   /transl_table=11
FT                   /gene="clpA"
FT                   /locus_tag="BP2753"
FT                   /product="ATP-dependent clp protease ATP-binding"
FT                   /note="Similar to Escherichia coli ATP-dependent Clp
FT                   protease ATP-binding subunit ClpA or LopD or B0882 or Z1119
FT                   or Ecs0968 SW:CLPA_ECOLI (P15716) (758 aa) fasta scores:
FT                   E(): 8.5e-171, 61.73% id in 763 aa. Also similar to BP1198,
FT                   37.133% identity (46.014% ungapped) in 886 aa overlap."
FT                   /db_xref="GOA:Q7VVC4"
FT                   /db_xref="HSSP:1JBK"
FT                   /db_xref="InterPro:IPR019489"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVC4"
FT                   /protein_id="CAE43028.1"
FT                   /translation="MISQELEVSLHMAFVEARSARHEFITVEHLLLSLLDNASAVEVLR
FT                   ACAANLDDLRRNLRQFVTENTPVIPSGAAEVDTQPTLGFQRVIQRAIMHVSAGGTGKKP
FT                   VTGANVLVAIFGEKDSHAVYYLQQQGVTRLDVVNFLSHGITKQPQEESSALPKEQQASG
FT                   EEPGAESRQSPLDQYANDLNAAALAGRIDPLIGREHEVERVIQVLCRRRKNNPLLVGEA
FT                   GVGKTAIAEGLAWRITRGEVPEVLQTAQVFALDMGALLAGTKYRGDFEQRLKGVLKQIR
FT                   GNPDAILFIDEIHTLIGAGSASGGTLDASNLLKPALSSGQLKCIGATTYTEFRGVFEKD
FT                   HALSRRFQKIDVPEPSVEQTVQILRGLKSRFEEHHNVRYSAAALSAAAELSARYINDRH
FT                   LPDKAIDVIDEAGAAQRLLPRSRQKKVIGKGEIEHIVSKIARIPPQSVSNDDRSKLATL
FT                   DRDLKTVVFGQDEAIGALTAAIKMARSGLGKPDKPIGAFLFSGPTGVGKTEVARQLAFT
FT                   MGIELLRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAITKQPHCVLLLDEIEKAH
FT                   PDIFNILLQVMDHGTLTDNNGRKADFRNVILIMTTNAGAEILNRPAIGFANERVAGDEM
FT                   AEIRRMFTPEFRNRLDAIIPFSALSREIILRVVDKFLMQLEDQLHERRVAAVFTEKLRD
FT                   HLAKEGFDPLMGARPMQRLIQDTIRRALADELLFGKLVDGGNVTVDLDDAGKVVLGFEA
FT                   PGKPSSNAADKQEVELID"
FT   misc_feature    complement(143409..144092)
FT                   /note="HMMPfam hit to PF00004, ATPase family associated
FT                   with various cellular activities (AAA)"
FT   misc_feature    complement(143952..144008)
FT                   /note="ScanRegExp hit to PS00871, Chaperonins clpA/B
FT                   signature 2. Confirmed by InterPro eMOTIF pattern match."
FT   misc_feature    complement(144054..144077)
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   misc_feature    complement(144351..144935)
FT                   /note="HMMPfam hit to PF00004, ATPase family associated
FT                   with various cellular activities (AAA)"
FT   misc_feature    complement(144618..144656)
FT                   /note="ScanRegExp hit to PS00870, Chaperonins clpA/B
FT                   signature 1. Confirmed by InterPro eMOTIF pattern match."
FT   misc_feature    complement(144897..144920)
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   CDS             complement(145633..147801)
FT                   /transl_table=11
FT                   /gene="pbp"
FT                   /locus_tag="BP2754"
FT                   /product="penicillin-binding protein"
FT                   /note="Similar to Escherichia coli penicillin-binding
FT                   protein 1c PbpC or B2519 SW:PBPC_ECOLI (P76577) (770 aa)
FT                   fasta scores: E(): 1.3e-106, 46.04% id in 771 aa"
FT                   /db_xref="GOA:Q7VVC3"
FT                   /db_xref="InterPro:IPR001460"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVC3"
FT                   /protein_id="CAE43029.1"
FT                   /translation="MTFRRLAGWRRPALAAAVLAGGVVMALLALDRLFPLPRFGSDGAQ
FT                   VVVAADGTPLRTYPSRDGVWRYPVGPGQVSPHYLETLLTYEDRWFYWHPGVNPFALARA
FT                   GWQWAAHGRIVSGGSTLTMQVARLLDPELAGQPSKTLSAKLRQAWRAIQLEMHYSKDEI
FT                   LGLYLSHAPMGGIVEGVEMGARMWLGKSAADLSHAEAALLTALPQAPSRLRPDRHPQAA
FT                   QLARDKVLQRMAQRGVWDAALVADARIENVVAPPLRARWLAPLAAQRLLGEAGPAAGVV
FT                   RSTLDPDIQSTVEAMLLDRVDALPPKVSMAVLVMDNDSLEVKAYAGSADFTDDSRYAHV
FT                   DMVRGVRSPGSTLKPFLYALALDEGLIHSESLLLDAPLSFGGYAPGNFQAAFAGPVSVA
FT                   QALQRSLNVPAVDLLDRVGPARFASVMLAGGVHLRMPAGAVPNLSLILGGGGTTLEELV
FT                   GAYRALARGGLSGRPRLRASQPRIEARLMSPGAAWIVRDILELGGHPDRPLFQGAAAGR
FT                   QLAWKTGTSFGFRDAWAVGVTDRYTIGAWVGRPDGTPNPGFFGANVAAPLLQDIVAALP
FT                   AGAPVPRTRPPQVQAVVTCWPLGWRLGSAPAGICPERRMAWALDDTVPPSFVGYADTAT
FT                   GPLRIEGVADGTILRPVPGKRAVTLEVGAQGASGEVWWMLDGKVYRSGAAGQAQTLTLS
FT                   RNGRYALTVMDGQGRYAGLEFEISGVTP"
FT   misc_feature    complement(146092..146943)
FT                   /note="HMMPfam hit to PF00905, Penicillin binding protein
FT                   transpeptidase domain"
FT   misc_feature    complement(147142..147669)
FT                   /note="HMMPfam hit to PF00912, Transglycosylase"
FT   misc_feature    complement(147229..147252)
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   misc_feature    complement(147712..147762)
FT                   /note="1 probable transmembrane helix predicted for BP2754
FT                   by TMHMM2.0 at aa 13-30"
FT   misc_feature    complement(147724..147801)
FT                   /note="Signal peptide predicted for BP2754 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.999) with cleavage site
FT                   probability 0.500 between residues 26 and 27"
FT   CDS             complement(147798..152987)
FT                   /transl_table=11
FT                   /locus_tag="BP2755"
FT                   /product="putative exported protein"
FT                   /note="Similar to Xylella fastidiosa hypothetical protein
FT                   Xf1252 TR:Q9PDX7 (EMBL:AE003959) (1641 aa) fasta scores:
FT                   E(): 9.2e-134, 37.23% id in 1708 aa"
FT                   /db_xref="GOA:Q7VVC2"
FT                   /db_xref="InterPro:IPR001599"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVC2"
FT                   /protein_id="CAE43030.1"
FT                   /translation="MSGMKKEAWLALGGAVVVAAAVGTGWWMGKGGGQPAATPAAVTAP
FT                   AAGQAAQPAPQAAQPATGQAVVGSADPFAALNCQPRQYNDTLSLALTFTQPVDRRTDLS
FT                   RLIKVVDTGPLAQSDDENAAIERPAPAQAGAAGAKGKQVDGAWAVGDNPRVVYFPYVRP
FT                   QRSYAVQWQGDVPAGDGKSTLGAVGHCVVNTQAMPPSFYFASRGVVLPAGQNGGLPVAT
FT                   VNLAEVDVQFLRVEPDRVPEFFGSVLGIGNDAGADDRDDADDWRYADNRSLKGSVSNWD
FT                   LDRLHGLTTSVYQGRFLTDDKPNRRHVTFLPIEGVKELQEPGIYVAVMSQPGRFRYEYQ
FT                   VTYFYVSDIGLHTRRYAERIEAYTVSLKDGVAIPGALVEVLDGAGKVLAKANSDAQGHV
FT                   RIDGDFAKSKVLRASRGKEMTVLALGEPALDLSEFDVGGHPGRSNNLFVYAGRNLYRPG
FT                   ETFHVSVLPRDPDGRPLAAAPVSATLKRPDGRVVRTALWHPAKDQPGYIEQAIELPVDA
FT                   QTGAWMLELRIDPAARLPDAAWKFQVEEFLPERMKLQLDSAQTVLQPGQPWRVDVQGDY
FT                   LYGAPAAGNRLLSSFQVKRNRYALPQQWPGFIFGDVADDTRRHYEELPESELDDTGAGQ
FT                   LEIDPHTDGTHSPMSVRVSASLLELGGRPVVRSLERTVWPAPQLIAVRPLFDRDVAREG
FT                   APAAFEITRVDASGKVVPVQQAQVRLYHEERQYYWRFDDQRGWHSGYTENEELTDSRVV
FT                   DVGERTPLTLNVGWGRYRLEIADPQTGETLRYRFYAGWNAQDADAVGNRPDRVQLKLEG
FT                   VPARPGDTVAMTITPPHDGQALVTVEGDRMLWSKWVPVQASGTQVEIPVDKAWKRHDLY
FT                   VSATVFRPGSQGDRVTPARALGLAFLPIASDERRLQVSLSAPAKTRPETRATVRVKVEG
FT                   AAGKAARVTLSAVDVGILNINQYATPDPLDFFFGKHRYAPELLDIYGKLIEKMDGTQGR
FT                   LKWGGDAAMRGDSRSLPKKVKLVDLFSGPVKLDDKGEADIALDLPDFNGTLRLMAVAFT
FT                   ADQFGSADREMTVAAPIVAELNTPRFITPGDQTAIALDVTNLSGATQKITVRLQALDPL
FT                   AIADGTRTLTLKDKQRSTLRFVATTTGSYGLGLMRLSVDGEGAAEPVRIVRESVLQVQP
FT                   AHAPERRVRRVRLNPGEALPAPGDWTSAYFPDSVSVSMTLSNRPPINVSRLVDGLLTYP
FT                   YGCTEQTISAAIPWVLIDEAAAERFGLKVYSRADRESRVASALGRLAGMRAANGSYSLW
FT                   GDSSSRDVWLTAYTVGFMQDVRDHEFNLAPALLERPRQWLLEQLQQASGGFGTWSPNLR
FT                   RTLASGRFDENDAAILREDHRRFAGLAAAALVLARDGKAPLSTVRQLYDNYQERARSPL
FT                   PLMQLAAAFKLMGDEGRMKTALDEAMTRSYGINRRAGSNYLDEWLGDYGSAVRDYALSY
FT                   ALVNQYGLKHDRTEALLDQVGGYLGVRSYLSTQEQMALLLAAGATGAESRTPWQAALQI
FT                   GTGELKTLQGRDDHTLALSAGDLAGLQLRNTGSQSMFAEFDVQGTTMAAPAPRSDVIRL
FT                   KRVWYRPDGTAWNGGTLQTGDMLVVWVQAEASRLIPDALVVDRVPAGFEIENLNLSQSP
FT                   DMQDWTIGGRRVAESMADPNIKHREFRDDRYVAATMLGRGKVDIFYLARVVTPGRYSVP
FT                   ATEAEDMYRPELRAVGDSWSSIEIRDRAPRRP"
FT   misc_feature    complement(152928..152987)
FT                   /note="Signal peptide predicted for BP2755 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.954) with cleavage site
FT                   probability 0.348 between residues 20 and 21"
FT   CDS             complement(153077..153391)
FT                   /transl_table=11
FT                   /locus_tag="BP2756"
FT                   /product="hypothetical protein"
FT                   /note="Similar to several proteins of undefined function
FT                   e.g. Caulobacter crescentus hypothetical protein Cc2467
FT                   TR:Q9A5I0 (EMBL:AE005915) (119 aa) fasta scores: E():
FT                   2.8e-19, 60.87% id in 92 aa"
FT                   /db_xref="GOA:Q7VVC1"
FT                   /db_xref="InterPro:IPR014719"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VVC1"
FT                   /protein_id="CAE43031.1"
FT                   /translation="MSSTLDTQHDVVVEKQPARTAPPPMYQVVLLNDDYTPMEFVVKVL
FT                   QKFFGKNSEDATRIMLQVHHEGRAVCGVYPRDLAATRIAQVSQYARARQHPLQCIMEPT
FT                   "
FT   misc_feature    complement(153098..153346)
FT                   /note="HMMPfam hit to PF02617, Uncharacterized ACR,
FT                   COG2127"
FT   CDS             153619..153864
FT                   /transl_table=11
FT                   /locus_tag="BP2757"
FT                   /product="putative cold-shock protein"
FT                   /note="Similar to Salmonella typhimurium cold shock protein
FT                   CspA SW:CSPA_SALTY (P37410) (69 aa) fasta scores: E():
FT                   8.7e-15, 66.66% id in 66 aa. Also similar to many cold
FT                   shock-like proteins e.g. Stigmatella aurantiaca cold
FT                   shock-like protein CspA SW:CSPA_STIAU (P72366) (68 aa)
FT                   fasta scores: E(): 6.8e-17, 72.3% id in 65 aa"
FT                   /db_xref="GOA:Q7VVC0"
FT                   /db_xref="HSSP:1C9O"
FT                   /db_xref="InterPro:IPR019844"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVC0"
FT                   /protein_id="CAE43032.1"
FT                   /translation="MSDTTATAVQGDNPKATGTVKWFNDAKGFGFITPDDGGEDLFAHF
FT                   SSIQMNGFKTLKEGQKVSFEIIQGPKGKQALNITSA"
FT   misc_feature    153661..153861
FT                   /note="HMMPfam hit to PF00313, 'Cold-shock' DNA-binding
FT                   domain"
FT   misc_feature    153703..153762
FT                   /note="ScanRegExp hit to PS00352, 'Cold-shock' domain
FT                   signature. Confirmed by InterPro eMOTIF pattern match."
FT   CDS             153959..154477
FT                   /transl_table=11
FT                   /locus_tag="BP2758"
FT                   /product="exported protein"
FT                   /note="Similar in parts to several including: Plasmid
FT                   pSB102 hypothetical 17.7 kDa protein TR:CAC79159
FT                   (EMBL:AJ304453) (160 aa) fasta scores: E(): 4.9e-15, 36.91%
FT                   id in 149 aa and Treponema pallidum conserved hypothetical
FT                   protein tp0087 TR:O83125 (EMBL:AE001193) (179 aa) fasta
FT                   scores: E(): 7.1e-14, 41.81% id in 110 aa"
FT                   /db_xref="InterPro:IPR003795"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVB9"
FT                   /protein_id="CAE43033.1"
FT                   /translation="MHCPPTPAPMSIAAVLPVLRRIARTRFCAAVLALSVLSFGAAAQH
FT                   SSSGKPQPRLPTTPLSAGIHIIHAEVADNDDTRRQGLMYRTELPGNDGMLFVFEAPDQQ
FT                   CFWMRNTPLPLSIAFIADDGTIVNIEDMAPRTDDTHCSRKSVRYALEMAQGWFARHGIK
FT                   AGARINGLP"
FT   misc_feature    153959..154087
FT                   /note="Signal peptide predicted for BP2758 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.809) with cleavage site
FT                   probability 0.480 between residues 43 and 44"
FT   misc_feature    154133..154474
FT                   /note="HMMPfam hit to PF02643, Uncharacterized ACR,
FT                   COG1430"
FT   CDS             complement(154577..155782)
FT                   /transl_table=11
FT                   /locus_tag="BP2759"
FT                   /product="putative thiolase"
FT                   /note="Similar to Acinetobacter calcoaceticus
FT                   beta-ketoadipyl CoA thiolase PcaF SW:PCAF_ACICA (Q43974)
FT                   (401 aa) fasta scores: E(): 7.9e-100, 68.67% id in 399 aa"
FT                   /db_xref="GOA:Q7VVB8"
FT                   /db_xref="HSSP:1AFW"
FT                   /db_xref="InterPro:IPR002155"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVB8"
FT                   /protein_id="CAE43034.1"
FT                   /translation="MAVQAFICDAIRTPFGRYGGALSSVRADDLAAVPIKALMARNPGV
FT                   RWEELDDVLYGCANQAGEDNRNVARMAALLAGLPIEVPGATINRLCGSGLDAVGSAARA
FT                   IAAGQTSLMLAGGVESMSRAPFVMGKADSAFSRNAAIYDTTIGWRFVNKLMKAQYGVDS
FT                   MPETAENVADDFKISRADQDKFALASQQKALRAQQSGFFDAEITPVSIAQKKGDPVVVS
FT                   KDEHPRDTSLEALAKLKGVVREGGSVTAGNASGVNDGAAALLLADEKAAASHGLTPRAR
FT                   VVGMVTAGVAPRIMGMGPAPATRKVLAQTGLSLAQMDVIELNEAFAAQGLAVMRDLGIA
FT                   DDDARVNINGGAIALGHPLGASGARLVTTAINQLQRGGGRYALCTMCIGVGQGIALIIE
FT                   RV"
FT   misc_feature    complement(154580..155779)
FT                   /note="HMMPfam hit to PF00108, Thiolase, N-terminal domain"
FT   misc_feature    complement(154598..154639)
FT                   /note="ScanRegExp hit to PS00099, Thiolases active site."
FT   misc_feature    complement(154694..154744)
FT                   /note="ScanRegExp hit to PS00737, Thiolases signature 2.
FT                   Confirmed by InterPro eMOTIF pattern match."
FT   misc_feature    complement(155468..155524)
FT                   /note="ScanRegExp hit to PS00098, Thiolases acyl-enzyme
FT                   intermediate signature. Confirmed by InterPro eMOTIF
FT                   pattern match."
FT   CDS             complement(155898..157214)
FT                   /transl_table=11
FT                   /locus_tag="BP2760"
FT                   /product="putative chloride-channel protein"
FT                   /note="Similar to several chloride-channel proteins
FT                   including: Burkholderia cepacia chloride-channel protein
FT                   TR:AAK81672 (EMBL:AF029344) (443 aa) fasta scores: E():
FT                   2.8e-45, 40.82% id in 414 aa and to Escherichia coli
FT                   voltage-gated Clc-type chloride channel EriC or B0155
FT                   SW:ERIC_ECOLI (P37019) (473 aa) fasta scores: E(): 1.1e-17,
FT                   30.11% id in 455 aa"
FT                   /db_xref="GOA:Q7VVB7"
FT                   /db_xref="InterPro:IPR001807"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVB7"
FT                   /protein_id="CAE43035.1"
FT                   /translation="MRRVSHRTLSVSLLLGGAALVALVSLGFTQLADLALHWNRQWTAA
FT                   HGWLALIVTPCALAVLCWLTLRLAPYASGSGIPQVIAGLSLPPGGAQQRLVSLVQALWK
FT                   IPLTFLAMLAGASVGREGPSVQVGAALMLAWGQLWRRLGVPLRGFHSQELIAAGAAGGL
FT                   AAAFNAPLAGVIFAIEELGRGTVLRWQRLVLIGVLAAGFLVVAIAGNNPYLGTFAGQAL
FT                   AHNMLWWTLVCCVVNGILGGVFARLLGKGAAGAAPQRWRERVRRHPVATAFGLGLALAC
FT                   LGLLTGGAVYGTGYDQAAALLSGHDGVPDGFGLAKLAATVASYWAGIPGGIFTPALTTG
FT                   AGIGEQISHWAGPGVDTRVLVLVSMAAFLAAATQAPLTASVVVMEMTGSQPMLFWLLVG
FT                   ALGASVVSRQFCPRPFYHLAAGRFRRTAVVEAGRKASTE"
FT   misc_feature    complement(155982..156281)
FT                   /note="HMMPfam hit to PF00654, Voltage gated chloride
FT                   channel"
FT   misc_feature    complement(join(155991..156041,156072..156137,
FT                   156216..156281,156342..156407,156471..156536,
FT                   156582..156647,156687..156752,156798..156848,
FT                   157023..157088,157119..157184))
FT                   /note="10 probable transmembrane helices predicted for
FT                   BP2760 by TMHMM2.0 at aa 37-59, 69-91, 149-166, 181-203,
FT                   216-238, 253-275, 296-318, 338-360, 386-408 and 418-435"
FT   misc_feature    complement(156672..157055)
FT                   /note="HMMPfam hit to PF00654, Voltage gated chloride
FT                   channel"
FT   misc_feature    complement(157119..157214)
FT                   /note="Signal peptide predicted for BP2760 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.930) with cleavage site
FT                   probability 0.540 between residues 59 and 60"
FT   CDS             complement(157412..157990)
FT                   /transl_table=11
FT                   /gene="sodB"
FT                   /locus_tag="BP2761"
FT                   /product="superoxide dismutase"
FT                   /EC_number="1.15.1.1"
FT                   /note="Previously sequence: Bordetella pertussis superoxide
FT                   dismutase [fe] SodB SW:SODF_BORPE (P37369) (192 aa) fasta
FT                   scores: E(): 3.9e-80, 99.47% id in 192 aa. Also similar to
FT                   BP0193, 40.201% identity (41.885% ungapped) in 199 aa
FT                   overlap."
FT                   /db_xref="GOA:P37369"
FT                   /db_xref="HSSP:1DT0"
FT                   /db_xref="InterPro:IPR019831"
FT                   /db_xref="UniProtKB/Swiss-Prot:P37369"
FT                   /protein_id="CAE43036.1"
FT                   /translation="MAHTLPPLPYALDALAPRISKETLEFHYGKHHQTYVTNLNNLIPG
FT                   TEFENLSLEEIVKKSSGGVFNNAAQVWNHTFYWNSLSPNGGGEPSGALADAIKAKWGSV
FT                   DAFKEAFNKSAAGNFGSGWTWLVKKADGTLDIVNTSNAATPLTTADKALLTCDVWEHAY
FT                   YIDYRNARPKYLENFWALVNWEFAAKNFA"
FT   misc_feature    complement(157415..157987)
FT                   /note="HMMPfam hit to PF00081, Iron/manganese superoxide
FT                   dismutases, alpha-hairpin domain"
FT   misc_feature    complement(157499..157522)
FT                   /note="ScanRegExp hit to PS00088, Manganese and iron
FT                   superoxide dismutases signature. Confirmed by InterPro
FT                   eMOTIF pattern match."
FT   CDS             complement(158063..159454)
FT                   /transl_table=11
FT                   /gene="xseA"
FT                   /locus_tag="BP2762"
FT                   /product="exodeoxyribonuclease large subunit"
FT                   /EC_number="3.1.11.6"
FT                   /note="Similar to Escherichia coli exodeoxyribonuclease VII
FT                   large subunit XseA or B2509 SW:EX7L_ECOLI (P04994) (456 aa)
FT                   fasta scores: E(): 9.8e-58, 45% id in 440 aa and to
FT                   Neisseria meningitidis probable exodeoxyribonuclease VII
FT                   large subunit XseA or Nma1575 SW:EX7L_NEIMA (Q9JTY8) (451
FT                   aa) fasta scores: E(): 2e-63, 43.87% id in 449 aa"
FT                   /db_xref="GOA:Q7VVB6"
FT                   /db_xref="InterPro:IPR004365"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VVB6"
FT                   /protein_id="CAE43037.1"
FT                   /translation="MTIGLSVTNDVFARDILTVAQLNQAVGQLLERSIPSLWVRGEISN
FT                   FTQAASGHWYFTLKDSRAAVRTVMFRSRAAQVGFVPRPGDQVEVRARVSLYEPRGDYQL
FT                   QADGMRRAGVGNLYEAFLRLKAQLQDEGLFDPQRKRQPARLPRAIGVVTSLHAAALRDV
FT                   LSALARRAPQVPVIIYPAPVQGADAAARLAARVAQANQRAEVDTLLLVRGGGSIEDLWS
FT                   FNDEALAREVAASDIPVISGVGHETDFTIVDFVADLRAPTPTAAAELACVPRGDLLAAL
FT                   RHTAEWLARAQQRRLDQAAQRLDRAAAMLTSPAQRLAHQQERLNTLRHRLASAWRGPQG
FT                   HRVARLDMLAQRLAHRRPDTGRAAERSAALLAQLGRAQARLAAARQARLDTLAAQLRAL
FT                   DPQHTLARGYAIVRDAAGAIVTDATRLAARDRIEIAVARGRIGADVTDIGTPDGTDGNP
FT                   ALRRG"
FT   misc_feature    complement(158261..158842)
FT                   /note="HMMPfam hit to PF02601, Exonuclease VII, large
FT                   subunit"
FT   misc_feature    complement(159119..159346)
FT                   /note="HMMPfam hit to PF01336, OB-fold nucleic acid binding
FT                   domain"
FT   CDS             complement(159622..160572)
FT                   /transl_table=11
FT                   /locus_tag="BP2763"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7VVB5"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVB5"
FT                   /protein_id="CAE43038.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADESSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS"
FT   repeat_region   159622..159653
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   complement(159622..160674)
FT   misc_feature    complement(159658..160191)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   misc_feature    complement(160249..160314)
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   repeat_region   complement(160643..160674)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             160853..161473
FT                   /transl_table=11
FT                   /locus_tag="BP2764"
FT                   /product="putative biopolymer transport protein"
FT                   /note="Similar to several e.g. Synechocystis sp putative
FT                   biopolymer transport ExbB-like protein 3 sll1404
FT                   SW:EXB3_SYNY3 (P72604) (210 aa) fasta scores: E(): 2.4e-09,
FT                   29.89% id in 184 aa"
FT                   /db_xref="GOA:Q7VVB4"
FT                   /db_xref="InterPro:IPR002898"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVB4"
FT                   /protein_id="CAE43039.1"
FT                   /translation="MLNLLREAGWPIWPLLATSILGLALIVERLLALRRSRILPRGLNE
FT                   QVLEMLRNQQDTPEALARLERNSPLGRVLAEVLRQRHLPREELRTAVEDAGRGAAYELG
FT                   RYVSAIGTIAVVAPLMGLFGTVVGMIEIFGSYAPGASDPAQLARGISIALYNTGFGILI
FT                   AIPAMIVHRYLRARIDGYLHAMEQSAGRLARYVAPARSREARP"
FT   misc_feature    join(160880..160948,161171..161239,161297..161365)
FT                   /note="3 probable transmembrane helices predicted for
FT                   BP2764 by TMHMM2.0 at aa 66-88, 163-185 and 205-227"
FT   misc_feature    161009..161422
FT                   /note="HMMPfam hit to PF01618, MotA/TolQ/ExbB proton
FT                   channel family"
FT   CDS             161470..161883
FT                   /transl_table=11
FT                   /locus_tag="BP2765"
FT                   /product="putative biopolymer transport protein"
FT                   /note="Similar to many including Vibrio cholerae biopolymer
FT                   transport protein Exbd2 or Vc1545 SW:EXD2_VIBCH (Q9ZHV9)
FT                   (134 aa) fasta scores: E(): 5.3e-06, 30.3% id in 132 aa and
FT                   to Bordetella pertussis ExbD protein TR:Q9S3M4
FT                   (EMBL:AJ132741) (155 aa) fasta scores: E(): 9.4e-06, 31.61%
FT                   id in 136 aa"
FT                   /db_xref="GOA:Q7VVB3"
FT                   /db_xref="InterPro:IPR003400"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVB3"
FT                   /protein_id="CAE43040.1"
FT                   /translation="MNFRGGRASQDELEINLIPLIDVLLVILIFLAATTSFARFTQLKV
FT                   VLPEAAAEQEAPPALEIAISQDGHYALNGNLLDAANPTDIAHALNLATAGKADPIVVIN
FT                   ADAQATHQAVVNVMEAARLAGIGRVNFAAQIAR"
FT   misc_feature    161494..161877
FT                   /note="HMMPfam hit to PF02472, Biopolymer transport protein
FT                   ExbD/TolR"
FT   misc_feature    161506..161574
FT                   /note="1 probable transmembrane helix predicted for BP2765
FT                   by TMHMM2.0 at aa 13-35"
FT   CDS             161880..162923
FT                   /transl_table=11
FT                   /locus_tag="BP2766"
FT                   /product="putative tetraacyldisaccharide 4'-kinase"
FT                   /EC_number="2.7.1.130"
FT                   /note="Similar to many including: Pseudomonas aeruginosa
FT                   tetraacyldisaccharide 4'-kinase LpxK or Pa2981
FT                   SW:LPXK_PSEAE (Q9HZM3) (332 aa) fasta scores: E(): 8.2e-30,
FT                   44.64% id in 336 aa and to Neisseria meningitidis
FT                   tetraacyldisaccharide 4'-kinase LpxK or Nmb0672
FT                   SW:LPXK_NEIMB (Q9K0D7) (344 aa) fasta scores: E(): 7.6e-35,
FT                   40.05% id in 337 aa"
FT                   /db_xref="GOA:Q7VVB2"
FT                   /db_xref="InterPro:IPR003758"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VVB2"
FT                   /protein_id="CAE43041.1"
FT                   /translation="MNAPRCLRRLLERQWRQGGWLSTLLRPLAALTGLVVARKRNAYLT
FT                   GARAAWRAPVPVVVVGNIYVGGTGKTPVVIEVVRQLQARGWTPGVVSRGYGVDVGAAPR
FT                   VGQGQLAAADYGDEPALIARATGAAIAVHPHRPRAVQALLRAHPGVDVVVSDDGLQHLA
FT                   LARDVEIVVQDERGVGNGRLLPVGPLREPAQRLADVDAIVTNAGRPRAAAAPAAGAPRQ
FT                   LAMWLEPTHAQRVTDGATRTLADLAALPPARLAAAAGIGNPARFFQTLEQAGIRPAHTL
FT                   ALPDHYAYAQSPFTALDADLILVTAKDAIKCAALDDPRLWAVQVGTRLSDPDFGDWLSA
FT                   TLRARQP"
FT   misc_feature    161937..162920
FT                   /note="HMMPfam hit to PF02606, Tetraacyldisaccharide-1-P
FT                   4'-kinase"
FT   CDS             162979..163167
FT                   /transl_table=11
FT                   /locus_tag="BP2767"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Escherichia coli, and protein YcaR or
FT                   B0917 or Z1263 or Ecs1000 SW:YCAR_ECOLI (P75844) (60 aa)
FT                   fasta scores: E(): 2.6e-11, 53.57% id in 56 aa"
FT                   /db_xref="InterPro:IPR005651"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VVB1"
FT                   /protein_id="CAE43042.1"
FT                   /translation="MESRLLDILVCPVCKGRLEFQRAQAELVCNADRLAFPVRDGVPIM
FT                   LEAEARSLDAEAPAQPS"
FT   CDS             163177..163941
FT                   /transl_table=11
FT                   /locus_tag="BP2768"
FT                   /product="3-deoxy-manno-octulosonate cytidylyltransferase"
FT                   /EC_number="2.7.7.38"
FT                   /note="Similar to Escherichia coli
FT                   3-deoxy-manno-octulosonate cytidylyltransferase KdsB or
FT                   B0918 SW:KDSB_ECOLI (P04951) (247 aa) fasta scores: E():
FT                   3.3e-40, 51.01% id in 247 aa and to Pseudomonas aeruginosa
FT                   3-deoxy-manno-octulosonate cytidylyltransferase Pa2979
FT                   TR:Q9HZM5 (EMBL:AE004723) (254 aa) fasta scores: E():
FT                   4.9e-46, 58.87% id in 248 aa"
FT                   /db_xref="GOA:Q7VVB0"
FT                   /db_xref="HSSP:1VH3"
FT                   /db_xref="InterPro:IPR004528"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VVB0"
FT                   /protein_id="CAE43043.1"
FT                   /translation="MSFTVLIPARLASTRLPDKPLADIAGKPMVVRVAERAALSGAERV
FT                   MIATDDARVQQAAAAHGHAAILTRPDHPTGTDRLSEAVDALGLPDDAIVVNVQGDEPLI
FT                   EPALIDAVAAQLVAAPHADIATCACPLADAEALFNPNVVKVVCTADRRALYFSRAPIPW
FT                   ARDALAGGARVLAPGLPAWHHIGIYAYRVAFLRRFPALSQGQLERYESLEQLRAMEHGH
FT                   VIVVHHTDSAPAAGVDTPADLERARAAYTNRL"
FT   misc_feature    163186..163848
FT                   /note="HMMPfam hit to PF02348, Cytidylyltransferase"
FT   CDS             164032..164688
FT                   /transl_table=11
FT                   /gene="adK"
FT                   /locus_tag="BP2769"
FT                   /product="adenylate kinase"
FT                   /EC_number="2.7.4.3"
FT                   /note="Previously sequenced Bordetella pertussis adenylate
FT                   kinase Adk SW:KAD_BORPE (P39068) (218 aa) fasta scores:
FT                   E(): 2.6e-79, 100% id in 218 aa"
FT                   /db_xref="GOA:P39068"
FT                   /db_xref="HSSP:1AKE"
FT                   /db_xref="InterPro:IPR007862"
FT                   /db_xref="UniProtKB/Swiss-Prot:P39068"
FT                   /protein_id="CAE43044.1"
FT                   /translation="MRLILLGPPGAGKGTQAAFLTQHYGIPQISTGDMLRAAVKAGTPL
FT                   GLEAKKVMDAGGLVSDDLIIGLVRDRLTQPDCANGYLFDGFPRTIPQADALKSAGIALD
FT                   YVVEIEVPESDIIERMSERRVHPASGRSYHVRFNPPKAEGVDDVTGEPLVQRDDDREET
FT                   VRHRLNVYQNQTRPLVDYYSSWAQSDAAAAPKYRKISGVGSVDEIKSRLSQALQS"
FT   misc_feature    164044..164592
FT                   /note="HMMPfam hit to PF00406, Adenylate kinase"
FT   misc_feature    164272..164307
FT                   /note="ScanRegExp hit to PS00113, Adenylate kinase
FT                   signature. Confirmed by InterPro eMOTIF pattern match."
FT   CDS             164780..165538
FT                   /transl_table=11
FT                   /locus_tag="BP2770"
FT                   /product="probable short-chain dehydrogenase"
FT                   /note="Similar to many Prokaryotic and Eukaryotic
FT                   dehydrogenases e.g. Pseudomonas aeruginosa probable
FT                   short-chain dehydrogenase Pa2554 TR:Q9I0T0 (EMBL:AE004683)
FT                   (255 aa) fasta scores: E(): 3.8e-60, 67.05% id in 255 aa
FT                   and Drosophila melanogaster 3-hydroxyacyl-coa dehydrogenase
FT                   type II Scu or Cg7113 SW:HCD2_DROME (O18404) (255 aa) fasta
FT                   scores: E(): 6.6e-45, 55.9% id in 254 aa"
FT                   /db_xref="GOA:Q7VVA9"
FT                   /db_xref="HSSP:1E3S"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVA9"
FT                   /protein_id="CAE43045.1"
FT                   /translation="MEIANKVFIVTGGASGLGAGTVRMLVANGAKVVIADVQDEPGQAL
FT                   AKELNQRYVHCDVTQEADGKQAVAAAVELGPLFGLVNCAGVAPAAKIVGKNGAHPLDLF
FT                   QKVVSINLIGSFNMMRLAAEAMSANTPESTGERGVLINTASVAAFDGQIGQAAYAASKA
FT                   GVAGMTLPIARDLSKTGIRCMTIAPGIFGTPMIFGMPQEVQDSLAASIPFPARLGRPED
FT                   YARLVHSIITNDMLNGETIRLDGAIRMPPK"
FT   misc_feature    164795..165361
FT                   /note="HMMPfam hit to PF00106, short chain dehydrogenase"
FT   misc_feature    165212..165298
FT                   /note="ScanRegExp hit to PS00061, Short-chain
FT                   dehydrogenases/reductases family signature. Confirmed by
FT                   InterPro eMOTIF pattern match."
FT   CDS             165564..167165
FT                   /transl_table=11
FT                   /locus_tag="BP2771"
FT                   /product="conserved integral membrane protein"
FT                   /note="Similar to many proteins which display high sequence
FT                   similarity to the MviN virulence factor. The function of
FT                   these related proteins remains unclear e.g. Escherichia
FT                   coli virulence factor homolog MviN or B1069 or Z1707 or
FT                   Ecs1447 SW:MVIN_ECOLI (P75932) (511 aa) fasta scores: E():
FT                   3.2e-89, 49.71% id in 521 aa"
FT                   /db_xref="GOA:Q7VVA8"
FT                   /db_xref="InterPro:IPR004268"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVA8"
FT                   /protein_id="CAE43046.1"
FT                   /translation="MPARCFGTLAFMALLRSAATVSSFTLLSRITGLVRDILVARAFGA
FT                   GPLTDAFWVAFRIPNLLRRLFAEGAFAQAFVPILGAARTERSDAEVRTLLDRVAVLLTA
FT                   ALMLVTLAGVVAAPWVVTAMASGLRSAERGAEFGAAVWMTRVMFPYILCMSLIAFASGV
FT                   LNTWRRFAVPAFTPVLLNLAMIAACLWLAPRMDVPIYALALGVMAGGVAQLAVQWLALA
FT                   RLGLTPRWSLDLRQAWRDPTVQRILKQMAPATLGVSVAQISLLINTNIATWLQPGSVTW
FT                   LSFADRLMEFPTALLGVALGTVLLPSLSAAHARADQDGYSGLLDWGLRLVLMLGLPAAL
FT                   GLALLSDGLVATLFHYGAFQAQDVQQTRLAVIAYSAGLIGLLAIKILAPGFYAKQDIRT
FT                   PVKIAIMVLVLTQLLNAILVPWLAHAGLALAIGLGACINALALLTGLRRRGVYRPGAGW
FT                   GRFMLRLVPALAALAAVLLAADRHIDWIALQPWPGLRALWLGGVLLACMLAYFGLLLAA
FT                   GMRPRDFTRRGARWRM"
FT   misc_feature    165564..165617
FT                   /note="Signal peptide predicted for BP2771 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.986) with cleavage site
FT                   probability 0.473 between residues 18 and 19"
FT   misc_feature    join(165576..165644,165672..165731,165858..165926,
FT                   165984..166052,166071..166139,166152..166220,
FT                   166317..166385,166428..166496,166557..166625,
FT                   166668..166736,166770..166829,166839..166898,
FT                   166932..167000,167043..167111)
FT                   /note="14 probable transmembrane helices predicted for
FT                   BP2771 by TMHMM2.0 at aa 5-27, 37-56, 99-121, 141-163,
FT                   170-192, 197-219, 252-274, 289-311, 332-354, 369-391,
FT                   403-422, 426-445, 457-479 and 494-516"
FT   misc_feature    165849..165896
FT                   /note="ScanRegExp hit to PS00038, Myc-type,
FT                   'helix-loop-helix' dimerization domain signature."
FT   CDS             167366..168370
FT                   /transl_table=11
FT                   /locus_tag="BP2772"
FT                   /product="putative membrane protein"
FT                   /note="Weakly similar to many proposed trancriptional
FT                   regulators e.g. Escherichia coli protein FecR or B4292
FT                   SW:FECR_ECOLI (P23485) (317 aa) fasta scores: E(): 4.4e-17,
FT                   30.38% id in 316 aa"
FT                   /db_xref="InterPro:IPR012373"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVA7"
FT                   /protein_id="CAE43047.1"
FT                   /translation="MNTAANTPPLSDQVVDWLLLLRSGQATRTDYARFLAWRNANPMNE
FT                   NAWQQLTGTLAGANTGRLGDAYPTGYDGADQAPPAELPAETLAMPARRHFLSSVGALTL
FT                   GGAGLAAAAYVGNSFYPLNALAADAATNTGERRRYMLSDGSELLLDARSRVNLEFTATY
FT                   RRLHLLEGAVSVTVRADPYRPFSVQTAEGVVRSLGTRYMVRQQVRRTLVVVHENDVEIE
FT                   TVANARGIVRAGTGARFDATRVDTPRAGLAAHAAWENGWIEAHGRPLADVVAAMRPYRR
FT                   GTLRVSMAAGGLPVSGTFPLDDSDATLVALQASVPIRVTRLTPWFVSIGVATA"
FT   misc_feature    167645..167713
FT                   /note="1 probable transmembrane helix predicted for BP2772
FT                   by TMHMM2.0 at aa 94-116"
FT   CDS             168471..168734
FT                   /transl_table=11
FT                   /gene="rpst"
FT                   /locus_tag="BP2773"
FT                   /product="30s ribosomal protein s20"
FT                   /note="Similar to Haemophilus influenzae 30s ribosomal
FT                   protein s20 RpsT or Hi0965 SW:RS20_HAEIN (P44959) (86 aa)
FT                   fasta scores: E(): 4.9e-12, 51.16% id in 86 aa"
FT                   /db_xref="GOA:Q7VVA6"
FT                   /db_xref="InterPro:IPR002583"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VVA6"
FT                   /protein_id="CAE43048.1"
FT                   /translation="MANTAQARKRARQSVQRNKHNSSLRSMLRTAIKRVRQSIATGDKA
FT                   AAGETLRKATSVIDSVADKNIIHKNKAARHKSRLAAAVKALA"
FT   misc_feature    168474..168725
FT                   /note="HMMPfam hit to PF01649, Ribosomal protein S20"
FT   CDS             complement(168852..169628)
FT                   /transl_table=11
FT                   /locus_tag="BP2774"
FT                   /product="putative aldolase"
FT                   /note="Similar to Escherichia coli
FT                   2-dehydro-3-deoxyglucarate aldolase GarL or B3126
FT                   SW:GARL_ECOLI (P23522) (256 aa) fasta scores: E(): 6.7e-56,
FT                   59.12% id in 252 aa, and to Escherichia coli
FT                   2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase HpcH or
FT                   HpaI SW:HPAI_ECOLI (Q47098) (262 aa) fasta scores: E():
FT                   9e-44, 49.6% id in 252 aa"
FT                   /db_xref="GOA:Q7VVA5"
FT                   /db_xref="HSSP:1DXE"
FT                   /db_xref="InterPro:IPR005000"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVA5"
FT                   /protein_id="CAE43049.1"
FT                   /translation="MTTMNSPLPNRFRQRILAREQLIGYWLSLASHITAEVAGMADFDW
FT                   LLLDAEHSPNDVPLLLQQLQALQGSASAAVGRPSWNDPVEIKRMLDIGFYNLLIPFIDS
FT                   ADDARRAVAAMRYPPQGMRGVSVAQRSNRYGTVTDYLRTINDNICVLLQIESRPGVEAV
FT                   DEIAAVDGVDGVFIGPSDLAAALGHLGNPGHPEVQEAIRHLHGRVAAQGKAVGILAPVQ
FT                   ADARRYLDMGAHFVAVGSDLGVFKQATFALRAAFPA"
FT   CDS             complement(join(169679..170116,171166..171717))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2775"
FT                   /product="putative exported protein (pseudogene)"
FT                   /note="Pseudogene. This CDS is disrupted by the insertion
FT                   of IS481 element. Similar to many proteins of undefined
FT                   function e.g. Rhizobium meliloti conserved hypothetical
FT                   protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta
FT                   scores: E(): 4.3e-47, 43.78% id in 322 aa."
FT   repeat_region   170117..170148
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   170117..171169
FT   CDS             170219..171169
FT                   /transl_table=11
FT                   /locus_tag="BP2776"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTA3"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTA3"
FT                   /protein_id="CAE43051.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS"
FT   misc_feature    170477..170542
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   misc_feature    170600..171133
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   repeat_region   complement(171138..171169)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   misc_feature    complement(171631..171717)
FT                   /note="Signal peptide predicted for BP2777 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.780 between residues 29 and 30"
FT   CDS             complement(join(171763..172557,172554..173504))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2779"
FT                   /product="putative dihydroxy-acid dehydratase (pseudogene)"
FT                   /EC_number="4.2.1.9"
FT                   /note="Pseudogene. This CDS appears to have a frameshift
FT                   mutation following codon 317. The frameshift occurs within
FT                   a dimeric tract of (GGCC)2. The sequence has been checked
FT                   and believed to be correct. Similar to Streptomyces
FT                   coelicolor putative dihydroxy-acid dehydratase sci7.06C
FT                   SWALL:Q9X9Y4 (EMBL:AL096743) (576 aa) fasta scores: E():
FT                   1.2e-144, 63.5% id in 570 aa, and to Rhizobium meliloti
FT                   putative dihydroxy-acid dehydratase protein IlvD3 or R00108
FT                   or Smc04144 SWALL:Q92T72 (EMBL:AL591782) (574 aa) fasta
FT                   scores: E(): 2.4e-143, 61.8% id in 576 aa"
FT                   /db_xref="PSEUDO:CAE43052.1"
FT   variation       complement(172554..172561)
FT                   /note="(GGCC)2 in pertussis; (GGCC)3 in parapertussis and
FT                   bronchiseptica"
FT   CDS             complement(173553..174665)
FT                   /transl_table=11
FT                   /locus_tag="BP2780"
FT                   /product="putative malate dehydrogenase"
FT                   /EC_number="1.1.1.37"
FT                   /note="Similar to several e.g. Pyrococcus abyssi malate
FT                   dehydrogenase Mdh or Pab1791 SW:MDH_PYRAB (Q9V0D5) (362 aa)
FT                   fasta scores: E(): 1e-28, 34.88% id in 344 aa."
FT                   /db_xref="GOA:Q7VVA4"
FT                   /db_xref="InterPro:IPR003767"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVA4"
FT                   /protein_id="CAE43053.1"
FT                   /translation="MPESGMEADMVAIGRVREQIDRVLRAWGMPEAPAGVTADLMAETD
FT                   LLGIDSHGISMLPSYEDKLRAGTLRIDAQPRLVREGTASALLDGMGGLGHPVVAQAMRM
FT                   AVDKAFEHGVGAVSVRNSHHFGAAGVYARLAVQRGAVALVTSSATTLIMVPTHGARPML
FT                   GTNPIAFGAPAAHNDALLLDMATTTVAANKVKVYDYYGKPLPPGWAVDGAGAGVTDSAA
FT                   AMQFIFQRPEGGLTPLGGTAEMSSHKGYGLAIMAQVLGGTLGGSLMAARHAARRRPDDP
FT                   DDVGHFFLALDPDAFRAGGSFESEMDDLIDTLHDTPAADPAQPVLVPGDPEAAERARRL
FT                   RDGVPLAAALRERLRRICERSGAEYVLDAG"
FT   misc_feature    complement(173595..174635)
FT                   /note="HMMPfam hit to PF02615, Malate/L-lactate
FT                   dehydrogenase"
FT   CDS             complement(174722..175672)
FT                   /transl_table=11
FT                   /locus_tag="BP2781"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTB9"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTB9"
FT                   /protein_id="CAE43054.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN"
FT   repeat_region   174722..174753
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   complement(174722..175774)
FT   misc_feature    complement(174758..175291)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   misc_feature    complement(175349..175414)
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   repeat_region   complement(175743..175774)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(175881..176102)
FT                   /transl_table=11
FT                   /locus_tag="BP2782"
FT                   /product="lipoprotein"
FT                   /note="Similar to many proteins of undefined function e.g.
FT                   Pseudomonas aeruginosa hypothetical 8.0 kDa protein Pa3031
FT                   TR:O68801 (EMBL:AF053982) (73 aa) fasta scores: E():
FT                   4.7e-10, 51.51% id in 66 aa"
FT                   /db_xref="InterPro:IPR010305"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVA3"
FT                   /protein_id="CAE43055.1"
FT                   /translation="MTLKTMTLAFAVTGLGVLAGCSSPSVVQQRDGSQVVTPDEPKYNE
FT                   DTGFYEYEKDGHKVQMNKDDVKTIEEVK"
FT   misc_feature    complement(176022..176102)
FT                   /note="Signal peptide predicted for BP2782 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.998) with cleavage site
FT                   probability 0.676 between residues 34 and 35"
FT   misc_feature    complement(176040..176072)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(176316..177722)
FT                   /transl_table=11
FT                   /gene="thrC"
FT                   /locus_tag="BP2783"
FT                   /product="threonine synthase"
FT                   /EC_number="4.2.3.1"
FT                   /note="Similar to Corynebacterium glutamicum threonine
FT                   synthase ThrC SW:THRC_CORGL (P23669) (481 aa) fasta scores:
FT                   E(): 5.5e-97, 56.56% id in 472 aa"
FT                   /db_xref="GOA:Q7VVA2"
FT                   /db_xref="HSSP:1KL7"
FT                   /db_xref="InterPro:IPR004450"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVA2"
FT                   /protein_id="CAE43056.1"
FT                   /translation="MKYISTRGGMAPQSFSDILLEGLAPDGGLAIPEQLPQVDAATLES
FT                   WRGLSYADLAFEVLSLFATDIPAEDLRGLTRAAYRQGVFKSEDIVPVRELGQGLQLLGL
FT                   SEGPTLAFKDMAMQFLGQVFEYVLTRRGTTLNIVGATSGDTGSAAEYALRGKQGVAVFM
FT                   LSPHGRMSAFQRAQMYSLQDENIHNIAVRGVFDQAQDIVKQLAGDLAFKTRYRLGAVNS
FT                   INWARIAAQVVYYFHGWLRAAPKGGEVSFAVPSGNFGNILSGHIARGMGVPIRRLVLAT
FT                   NENNVLEEFFRTGGYRPRGPEHTYATSSPSMDISRASNFERFVFDLVGRDPGRVASLWA
FT                   DLARDGSFDLSALKPQFETRYGFVAGASSHADRLQTIRNTFDETGVLVDPHTADGIKVA
FT                   RQFVEPGVPMLVLETALPAKFAETIEAALGRTVPPPADLADLESLPQRVTLMDCDAQAV
FT                   RAFIEAHAKV"
FT   misc_feature    complement(176613..177503)
FT                   /note="HMMPfam hit to PF00291, Pyridoxal-phosphate
FT                   dependent enzyme"
FT   CDS             complement(177719..179023)
FT                   /transl_table=11
FT                   /locus_tag="BP2784"
FT                   /product="homoserine dehydrogenase"
FT                   /EC_number="1.1.1.3"
FT                   /note="Similar to Pseudomonas aeruginosa homoserine
FT                   dehydrogenase Hom or Pa3736 SW:DHOM_PSEAE (P29365) (434 aa)
FT                   fasta scores: E(): 2.9e-97, 63.76% id in 436 aa"
FT                   /db_xref="GOA:Q7VVA1"
FT                   /db_xref="InterPro:IPR019811"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVA1"
FT                   /protein_id="CAE43057.1"
FT                   /translation="MNPMKVGLLGLGVVGGGTWAVLARNAEEIARRAGRRIEVSRIAVR
FT                   DVAKARSRVGDGVEISTDGFALVRDPAVDIVVELIGGDTLARELVLEAIAQGKHVVTAN
FT                   KALLAKHGNEIFAAASARGVMVAFEAAVAGGVPIIKAIREGLTANRIEWVAGIINGTTN
FT                   FILSEMRARGLPFADVLAEAQRLGYAEADPTFDIEGVDAAHKLTLLASLAFGVPVQFDK
FT                   AYVEGITQLAQEDIAHAERLGYRIKLLGITKRRVDGIELRVHPTLVPAERLLANVEGAM
FT                   NAVLVRGDAVGPTLYYGQGAGEEPTASAVVADLVDVTRLHTADPGHRVPHLAFQPDALS
FT                   DLQILSIEEVSTSYYLRMRVDDQPGVLADIARILADRSISIGSMIQQPARIGGADIIFL
FT                   THEAVEGNVNQAIEHIEALPFVRSKVTRLRMENLT"
FT   misc_feature    complement(177743..177964)
FT                   /note="HMMPfam hit to PF01842, ACT domain"
FT   misc_feature    complement(178067..178981)
FT                   /note="HMMPfam hit to PF00742, Homoserine dehydrogenase"
FT   misc_feature    complement(178409..178477)
FT                   /note="ScanRegExp hit to PS01042, Homoserine dehydrogenase
FT                   signature. Confirmed by InterPro eMOTIF pattern match."
FT   misc_feature    complement(178970..178993)
FT                   /note="ScanRegExp hit to PS00318,
FT                   Hydroxymethylglutaryl-coenzyme A reductases signature 2."
FT   CDS             complement(179020..180207)
FT                   /transl_table=11
FT                   /locus_tag="BP2785"
FT                   /product="putative aminotransferase"
FT                   /EC_number="2.6.1.17"
FT                   /note="Similar to Escherichia coli hypothetical
FT                   aminotransferase YfdZ or B2379 SW:YFDZ_ECOLI (P77434) (412
FT                   aa) fasta scores: E(): 4.8e-129, 79.64% id in 393 aa"
FT                   /db_xref="GOA:Q7VVA0"
FT                   /db_xref="InterPro:IPR015421"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VVA0"
FT                   /protein_id="CAE43058.1"
FT                   /translation="MRKFSRIERLPPYVFNITGELKMAARRRGEDIIDMSMGNPDGATP
FT                   QHIVDKLVEASTRPDTHGYSVSKGIPRLRKAICDWYMRRYAVEFDPDSEAIVTIGSKEG
FT                   LAHLMLATLDRGDTVLVPNPSYPIHIYGAVIAGANIRSVRMTPGIDFFEELERAVRESI
FT                   PKPKMMILGFPSNPTAQCVDLSFFERVVALAKEHDILVVHDLAYADVCFDGYVAPSIMQ
FT                   VPGARDVAVEFFTMSKSYNMAGWRIGYMVGNRELVGALARIKSYHDYGTFTPIQVASIA
FT                   ALDGPQDCVNEIVAQYQRRRDVLARGLHEAGWNVEIPKASMYIWAQIPEPYRAMGSLEF
FT                   AKRVLSDAKVAVSPGIGFGEYGDEYVRFALIENEQRTRQAVRGIKDMFRKDGLLK"
FT   misc_feature    complement(179038..180207)
FT                   /note="HMMPfam hit to PF00155, Aminotransferase class I and
FT                   II"
FT   CDS             180424..180876
FT                   /transl_table=11
FT                   /locus_tag="BP2786"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar in parts to Methylobacillus flagellatum
FT                   membrane protein TR:Q9RAN1 (EMBL:L78665) (122 aa) fasta
FT                   scores: E(): 3e-05, 35.17% id in 145 aa"
FT                   /db_xref="InterPro:IPR007523"
FT                   /db_xref="PDB:2K2E"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV99"
FT                   /protein_id="CAE43059.1"
FT                   /translation="MKLHTDPATALNTVTAYGDGYIEVNQVRFSHAIAFAPEGPVASWP
FT                   VQRPADITASLLQQAAGLAEVVRDPLAFLDEPEAGAGARPANAPEVLLVGTGRRQHLLG
FT                   PEQVRPLLAMGVGVEAMDTQAAARTYNILMAEGRRVVVALLPDGDS"
FT   CDS             180879..181343
FT                   /transl_table=11
FT                   /locus_tag="BP2787"
FT                   /product="hypothetical protein"
FT                   /note="Similar to many bacterioferritin comigratory
FT                   proteins the function of which are unclear e.g. Pseudomonas
FT                   aeruginosa Bcp or Pa1008 TR:Q9I4W5 (EMBL:AE004533) (157 aa)
FT                   fasta scores: E(): 1.9e-35, 62.33% id in 154 aa"
FT                   /db_xref="GOA:Q7VV98"
FT                   /db_xref="HSSP:1E2Y"
FT                   /db_xref="InterPro:IPR012335"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV98"
FT                   /protein_id="CAE43060.1"
FT                   /translation="MTPLIGKPAPLFTAESTIGPVSLDQCQGRAVVLYFYPKDNTPGCT
FT                   TESQDFRDLYEDFLAASTIVLGVSRDSLKSHENFKTKYELPFPLISDADETVCNLYGVI
FT                   KQKNMYGKQVRGIERSTFLIDAYGVLVQEWRGVKVPGHAKEVLQAAKSIG"
FT   misc_feature    180891..181319
FT                   /note="HMMPfam hit to PF00578, AhpC/TSA family"
FT   CDS             181414..183102
FT                   /transl_table=11
FT                   /locus_tag="BP2788"
FT                   /product="hypothetical protein"
FT                   /note="The C-terminus of the product of this CDS is similar
FT                   to many hypothetical proteins e.g. Vibrio cholerae
FT                   hypothetical protein Vc2507 vc2507 TR:Q9KP69
FT                   (EMBL:AE004321) (458 aa) fasta scores: E(): 1.3e-48, 42.85%
FT                   id in 462 aa. The N-terminus displays no significant
FT                   database hits and conrtains a proline rich repeat region
FT                   with 4xPAPA repeats."
FT                   /db_xref="GOA:Q7VV97"
FT                   /db_xref="InterPro:IPR006596"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV97"
FT                   /protein_id="CAE43061.1"
FT                   /translation="MTPMPLPKLPNRPAAILTFPSGDTARAKAARTNSKPAVAGNTDEP
FT                   LLQPELAGLAPARKAQQKAPARPVAAPAPAPAPAPAPAANRPAARPAPARKPRARTDSA
FT                   ARKLFVLDTNVLLHDPSSLFRFEEHDIFLPMMTLEELDHQKKGMSEVARNARQVSRSLD
FT                   SLVQDADNLDDGLALNALGNKDATGRLMFQTTAIHSTLPSDLPMGKADNQILGVVRALQ
FT                   ERHPQREVVLVSKDINMRLKARALGMAAEDYYNDHVLEDTDLMYSGVTQLPEDFWNKHG
FT                   KDVESWQQGGTTFYRIRGPLCAQFLVNQFVYFEGQMPLYAQVREVSGKTAVLATLRDYT
FT                   HGKNNVWGITARNREQNFALNLLMNPECDFVSLLGQAGTGKTLLALAAGITQVLETKRY
FT                   TEIIMTRVTVPVGEDIGFLPGTEEEKMLPWMGALEDNLDVLNMGEGEGGDWGRAATMDL
FT                   IRSRIKVKSLNFMRGRTFLNKYLIIDEAQNLTPKQMKTLITRAGPGTKVVCLGNVAQID
FT                   TPYLTEGSSGLTFVVDRFKGWPHSGHVTLQRGERSRLADYAGDVL"
FT   misc_feature    182047..183087
FT                   /note="HMMPfam hit to PF02562, PhoH-like protein"
FT   misc_feature    182536..182559
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   CDS             183207..184184
FT                   /transl_table=11
FT                   /locus_tag="BP2789"
FT                   /product="conserved hypothetical protein"
FT                   /note="Weakly similar to a number of pyridoxal phosphate
FT                   biosynthetic proteins e.g. Escherichia coli PdxA or B0052
FT                   SW:PDXA_ECOLI (P19624) (329 aa) fasta scores: E(): 9.4e-36,
FT                   38.43% id in 320 aa. Also similar to BP1813, 46.233%
FT                   identity (49.451% ungapped) in 292 aa overlap."
FT                   /db_xref="GOA:Q7VV96"
FT                   /db_xref="HSSP:1R8K"
FT                   /db_xref="InterPro:IPR005255"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV96"
FT                   /protein_id="CAE43062.1"
FT                   /translation="MTAPLPVGITMGDAAGIGPEIIAKACAQGLGAPAVVYGDPAIMRR
FT                   ATELLGARLRVLELAAIDQASGQPGCIEVIARGTPLPPDLPAGRVSAAAGQGAYDYLCA
FT                   AIDDARAGRIRAIVTAPLNKKSMQLAGIDQPGHTEILAERTGTRDFAMMLANDELRVLL
FT                   VTIHIPLAAVVAQITPQAELRAIRLADRACRQMGVTRPRVAVAGLNPHAGEDGKFGRED
FT                   IDIIAPAVAQARAEGIDASGPWPGDTVFMRARRGEFDIVVAQYHDQGLIPVKYLGLDQG
FT                   VNVTVGLPFVRTSVDHGTAFDIAWQGIADHASLVAAFDLALAMT"
FT   CDS             184264..185232
FT                   /transl_table=11
FT                   /locus_tag="BP2790"
FT                   /product="putative exported protein"
FT                   /note="Similar to several proteins of undefined function
FT                   e.g. Pseudomonas aeruginosa hypothetical protein Pa2026
FT                   SW:YK26_PSEAE (P39879) (333 aa) fasta scores: E(): 8.2e-82,
FT                   65.83% id in 322 aa"
FT                   /db_xref="GOA:Q7VV95"
FT                   /db_xref="InterPro:IPR002657"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV95"
FT                   /protein_id="CAE43063.1"
FT                   /translation="MQRIARFLPDRFTLLLVATVIIASLAPAYGQGIVAFGWITNLAVA
FT                   LLFFLHGARLSRDAIVAGVTHWRLHLTIFSATFLMFPLLGVALKPVLEPLVTPELYLGV
FT                   LFLCCLPATVQSAIAFTSIARGNVPAAVCSASASSLLGIFITPLLVGTVVASAAAAPIS
FT                   FDAVGKIMLQLLLPFVLGQLLRPWIGAWVHRRKALLKWVDQGSILLVVYTAFSEAVNEG
FT                   LWSNTPIPALLGLLTVCCIILVLAMAGSLLLGRLFKFDVADRITLLFCGSKKSLASGIP
FT                   MAQVIFAGQAVGAIVLPLMLFHQIQLMVCAVLATRYGKRPD"
FT   misc_feature    184264..184353
FT                   /note="Signal peptide predicted for BP2790 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.995) with cleavage site
FT                   probability 0.725 between residues 30 and 31"
FT   misc_feature    join(184297..184350,184363..184422,184459..184527,
FT                   184570..184638,184675..184743,184771..184839,
FT                   184957..185025,185101..185169)
FT                   /note="8 probable transmembrane helices predicted for
FT                   BP2790 by TMHMM2.0 at aa 12-29, 34-53, 66-88, 103-125,
FT                   138-160, 170-192, 232-254 and 280-302"
FT   CDS             complement(185253..186626)
FT                   /transl_table=11
FT                   /gene="dnaB"
FT                   /locus_tag="BP2791"
FT                   /product="DNA helicase"
FT                   /note="Similar to many helicases e.g. Escherichia coli
FT                   replicative DNA helicase DnaB or GroP or GrpA or B4052
FT                   SW:DNAB_ECOLI (P03005) (471 aa) fasta scores: E(): 4.5e-91,
FT                   56.73% id in 453 aa"
FT                   /db_xref="GOA:Q7VV94"
FT                   /db_xref="HSSP:1B79"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV94"
FT                   /protein_id="CAE43064.1"
FT                   /translation="MNTPADPQLEYLRVPPHSIEAEQSVLGGLLLDNAAWDRIADVLVE
FT                   EDFYRHDHRLIWHHIARLIGLARPADVITVNESLASAGKSEEVGGLAYLNALAHNTPSA
FT                   ANIRRYAEIVRERAMLRKLVSIADEISAAALNPQGKEARQLLDEAESKVFKIAQEGERG
FT                   SAGFQEIQPLLTQVVERIDELYHRESESDVTGVPTGFADLDKMTSGLQAGDLVIVAGRP
FT                   SMGKTSFSMNIGEHVAIEQGLPVAVFSMEMGAVQLAMRMLGSVGMLDQHRMRTGKLVAD
FT                   DWPRVTHAVQLMQDAQVYIDETPALSSMEVRARARRLARQCGQLGLIIIDYLQLMSANS
FT                   AGENRATEISEISRSLKGLAKELNCPLIALSQLNRSLEQRPNKRPVMSDLRESGAIEQD
FT                   ADVILFIYRDEVYNPDSPDKGSAEIIIGKQRNGPIGTVRLTFQGSSTRFLNFAPGTQY"
FT   misc_feature    complement(185457..186509)
FT                   /note="HMMPfam hit to PF00772, DnaB-like helicase"
FT   misc_feature    complement(185502..185567)
FT                   /note="Predicted helix-turn-helix motif with score 1001
FT                   (+2.60 SD) at aa 354-375, sequence RSLKGLAKELNCPLIALSQLNR"
FT   misc_feature    complement(185946..185969)
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   CDS             complement(186623..187459)
FT                   /transl_table=11
FT                   /locus_tag="BP2792"
FT                   /product="hypothetical protein"
FT                   /note="no significant database hits"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV93"
FT                   /protein_id="CAE43065.1"
FT                   /translation="MNEPPLHHNAPPGLRAWLDGEQAAAIRSVKEVTVDGVPCVVKRRR
FT                   PGVRRGISYVLRYLRAFFLALLCRILLGEFPRPSVLLRNGLDYEAERLRRLLQAGCRVP
FT                   EVWWQEPGLLVLEHVGDDLPFRLRQADEAGRIALAQALARDLAEFHGRGMWHGGAQVRN
FT                   VTLRDGRLWRIDFEENIGGALSLPLAQAYDLYQTLASLVSLRKLPPEQASHLGKLVLDT
FT                   YFAAHPDSEVRARMRRIARLICGAARLLRPLGGRLPWRDVRAFFRVAETLRLLLHP"
FT   CDS             complement(187576..188031)
FT                   /transl_table=11
FT                   /gene="rplI"
FT                   /locus_tag="BP2793"
FT                   /product="50s ribosomal protein l9"
FT                   /note="Highly similar to Escherichia coli 50s ribosomal
FT                   protein l9 RplI SW:RL9_ECOLI (P02418) (149 aa) fasta
FT                   scores: E(): 1.1e-20, 52.66% id in 150 aa"
FT                   /db_xref="GOA:Q7VV92"
FT                   /db_xref="HSSP:1CQU"
FT                   /db_xref="InterPro:IPR020070"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VV92"
FT                   /protein_id="CAE43066.1"
FT                   /translation="MQIILLEKVANLGNLGEVVRVRDGYARNFLIPQKKARRATDAALK
FT                   EFEARRAELEKVQAEKLAAAQALAERLNGFQLKISQKAGVDGRLFGSVTNADVAEGLRK
FT                   AGFEAVEKSQVRMPNGQIKAVGEYLVQAVLHADVVADVVVLVEGEMA"
FT   misc_feature    complement(187585..188031)
FT                   /note="HMMPfam hit to PF01281, Ribosomal protein L9"
FT   misc_feature    complement(187912..187995)
FT                   /note="ScanRegExp hit to PS00651, Ribosomal protein L9
FT                   signature. Confirmed by InterPro eMOTIF pattern match."
FT   CDS             complement(188047..188319)
FT                   /transl_table=11
FT                   /gene="rpsR"
FT                   /locus_tag="BP2794"
FT                   /product="30s ribosomal protein s18"
FT                   /note="Similar to Escherichia coli 30s ribosomal protein
FT                   s18 RpsR SW:RS18_ECOLI (P02374) (74 aa) fasta scores: E():
FT                   3.2e-18, 70.42% id in 71 aa. Note the extended N-terminus
FT                   of the predicted product of this CDS when compared to its
FT                   orthologues."
FT                   /db_xref="GOA:Q7VV91"
FT                   /db_xref="InterPro:IPR018275"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VV91"
FT                   /protein_id="CAE43067.1"
FT                   /translation="MAFFGKRKEKRKFTQQNPLFKRRKFCRFTAAGVEEIDYKDLDTLR
FT                   DFVQENGKIIPARLTGTRAIYQRQLDTAIKRARFLALLPYTDNHK"
FT   misc_feature    complement(188071..188232)
FT                   /note="HMMPfam hit to PF01084, Ribosomal protein S18"
FT   CDS             complement(188412..188735)
FT                   /transl_table=11
FT                   /gene="priB"
FT                   /locus_tag="BP2795"
FT                   /product="primosomal replication protein n"
FT                   /note="Similar to Escherichia coli primosomal replication
FT                   protein N PriB or B4201 SW:PRIB_ECOLI (P07013) (103 aa)
FT                   fasta scores: E(): 0.11, 27.55% id in 98 aa"
FT                   /db_xref="GOA:P67673"
FT                   /db_xref="InterPro:IPR000424"
FT                   /db_xref="PDB:3DM4"
FT                   /db_xref="UniProtKB/Swiss-Prot:P67673"
FT                   /protein_id="CAE43068.1"
FT                   /translation="MNTLELSARVLECGAMRHTPAGLPALELLLVHESEVVEAGHPRRV
FT                   ELTISAVALGDLALLLADTPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAGSMGRDP
FT                   LVG"
FT   CDS             complement(188783..189163)
FT                   /transl_table=11
FT                   /gene="rpsF"
FT                   /locus_tag="BP2796"
FT                   /product="30s ribosomal protein s6"
FT                   /note="Similar to Escherichia coli 30s ribosomal protein s6
FT                   RpsF or B4200 SW:RS6_ECOLI (P02358) (135 aa) fasta scores:
FT                   E(): 1.7e-27, 60.93% id in 128 aa"
FT                   /db_xref="GOA:Q7VV89"
FT                   /db_xref="InterPro:IPR014717"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VV89"
FT                   /protein_id="CAE43069.1"
FT                   /translation="MRHYEVVFIVHPDQSEQVPAMVERYQALVTGQSGTVHRLEDWGRR
FT                   QLAYPIQKLVKAHYVCMNIECGQATLDELEHSFRYNDAVLRHLVIKTKKAPAAPSIMMK
FT                   SVEREEARKASAEAAATATAAE"
FT   misc_feature    complement(188888..189160)
FT                   /note="HMMPfam hit to PF01250, Ribosomal protein S6"
FT   CDS             complement(189383..190180)
FT                   /transl_table=11
FT                   /locus_tag="BP2797"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to many proteins of undefined function e.g.
FT                   Neisseria meningitidis hypothetical protein Nmb0803
FT                   TR:Q9K023 (EMBL:AE002434) (257 aa) fasta scores: E():
FT                   3.3e-51, 55.33% id in 253 aa"
FT                   /db_xref="GOA:Q7VV88"
FT                   /db_xref="InterPro:IPR003801"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VV88"
FT                   /protein_id="CAE43070.1"
FT                   /translation="MNSPIDPAIVMPDVQSSTDTRHIPIQRVGIRGVRHPMLVLAGDGA
FT                   AQPTVANWTLTVALPAEEKGTHMSRFVALLEKYRATPMTPALFAAMAREMLPLLHAERG
FT                   DITASFPYFINKSAPVSGVQSLLDYEMQWIARAVGEQVEFELVAQVPVTSLCPCSKAIS
FT                   EYGAHNQRSHVTVSAIVDGDFRMDELIRLVEDEASCELWGLLKRPDEKYVTERAYDNPK
FT                   FVEDLVRDVAARLKAHPGIGRFRVEAENFESIHNHSAYAVVEG"
FT   misc_feature    complement(189386..190153)
FT                   /note="HMMPfam hit to PF02649, Uncharacterized ACR,
FT                   COG1469"
FT   CDS             complement(190337..192199)
FT                   /transl_table=11
FT                   /gene="dxs"
FT                   /locus_tag="BP2798"
FT                   /product="1-deoxy-D-xylulose 5-phosphate synthase"
FT                   /note="Similar to many including: Escherichia coli
FT                   1-deoxy-D-xylulose 5-phosphate synthase Dxs or B0420
FT                   SW:DXS_ECOLI (P77488) (619 aa) fasta scores: E(): 4e-136,
FT                   57% id in 614 aa, and to Pseudomonas aeruginosa
FT                   1-deoxy-D-xylulose 5-phosphate synthase Dxs or Pa4044
FT                   SW:DXS_PSEAE (Q9KGU7) (627 aa) fasta scores: E(): 7.8e-143,
FT                   60.09% id in 614 aa"
FT                   /db_xref="GOA:Q7VV87"
FT                   /db_xref="InterPro:IPR005475"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VV87"
FT                   /protein_id="CAE43071.1"
FT                   /translation="MTTELLDRILSPADLRQLDRRELKRLADELRGFVLESVSRTGGHL
FT                   SSNLGTVELSLALHYVFDTPHDRIVWDVGHQSYPHKILTGRREGMAHLRQQGGISGFPK
FT                   RSESEYDAFGTAHSSTSISAALGMAVASRNAGVQRQHIAVIGDGAMSAGMAFEAMNNAG
FT                   VTPNINLLVVLNDNDMSISPPVGALNRYLARLMSGQFYAAAKNVGRAVLQHVPPVLELA
FT                   RRLEEHAKGMVTPATLFEEFGFNYVGPIDGHDLDALVPTLQNLRALPGLQFLHVVTRKG
FT                   QGYKLAEADPVLYHGPGKFDPAVGIQQAKAPARKTFTQVFGQWLCDMAERDERLVGITP
FT                   AMREGSGLVEFEQRFPQRYFDVGIAEQHAVTFAAGLACEGQKPVVAIYSTFLQRGYDQL
FT                   VHDVALQNLDVTFALDRAGLVGADGATHAGNYDIAFLRCVPNMVVAAPSDESEARLLLS
FT                   TCYEHPGPASVRYPRGAGCGAAVGEGLATVPLGKGLVRREGRRIAILGFGTLVQAALGA
FT                   AGQIDAMVADMRFVKPLDRELVLELAARHDALVTVEEAAIMGGAGSAVLETLAEAGVTL
FT                   PVLQLGLPDAFIDHGDQAALLAGLGLDAAGIERAIRARFGALLA"
FT   misc_feature    complement(192050..192109)
FT                   /note="ScanRegExp hit to PS00801, Transketolase signature
FT                   1. Confirmed by InterPro eMOTIF pattern match."
FT   CDS             complement(192249..193160)
FT                   /transl_table=11
FT                   /locus_tag="BP2799"
FT                   /product="probable geranyltranstransferase"
FT                   /note="Similar to Bradyrhizobium japonicum probable
FT                   geranyltranstransferase SW:ISPA_BRAJA (Q45220) (332 aa)
FT                   fasta scores: E(): 2.2e-42, 49.65% id in 288 aa"
FT                   /db_xref="GOA:Q7VV86"
FT                   /db_xref="InterPro:IPR017446"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV86"
FT                   /protein_id="CAE43072.1"
FT                   /translation="MKQSHLACADWLRERAQHVEHVLDELLPGADIAPTRLHEAMRYAV
FT                   LGGGKRVRAALVYAAGQACPVNGSTLAVGASMDRAAAAVELIHAYSLVHDDLPCMDDDT
FT                   LRRGRPTVHVQFDEATAMLAGDALQPLAFELLAGMPIAPALVVQAAQVLARAAGSQGMA
FT                   GGQAIDLHSVGRMLTRDELQTMHSMKTGAMLACSVTLGGIVAGASSTARQALDSYAQAI
FT                   GLAFQVVDDILDVTADTASLGKTAGKDAADNKPTYVSLLGLEQARALAQELRQAAHQAL
FT                   APLGESGARLGQLADFIVLRDR"
FT   misc_feature    complement(192264..193052)
FT                   /note="HMMPfam hit to PF00348, Polyprenyl synthetase"
FT   misc_feature    complement(192459..192497)
FT                   /note="ScanRegExp hit to PS00444, Polyprenyl synthetases
FT                   signature 2. Confirmed by InterPro eMOTIF pattern match."
FT   misc_feature    complement(192837..192887)
FT                   /note="ScanRegExp hit to PS00723, Polyprenyl synthetases
FT                   signature 1. Confirmed by InterPro eMOTIF pattern match."
FT   CDS             complement(193165..193431)
FT                   /transl_table=11
FT                   /gene="xseB"
FT                   /locus_tag="BP2800"
FT                   /product="exodeoxyribonuclease VII small subunit"
FT                   /EC_number="3.1.11.6"
FT                   /note="Similar to Escherichia coli exodeoxyribonuclease VII
FT                   small subunit XseB or B0422 SW:EX7S_ECOLI (P22938) (79 aa)
FT                   fasta scores: E(): 2.8e-07, 48.57% id in 70 aa"
FT                   /db_xref="GOA:Q7VV85"
FT                   /db_xref="InterPro:IPR003761"
FT                   /db_xref="PDB:1VP7"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VV85"
FT                   /protein_id="CAE43073.1"
FT                   /translation="MASSKQADPQTDARPLPQDFETALAELESLVSAMENGTLPLEQSL
FT                   SAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRPLDPAALDDE"
FT   misc_feature    complement(193174..193317)
FT                   /note="HMMPfam hit to PF02609, Exonuclease VII small
FT                   subunit"
FT   CDS             complement(193518..194387)
FT                   /transl_table=11
FT                   /locus_tag="BP2801"
FT                   /product="putative transcriptional regulator"
FT                   /note="Similar in the C-terminus to many putative
FT                   transcriptional regulators e.g. Rhizobium meliloti putative
FT                   transcriptional regulator IclR family protein Smb20586
FT                   TR:CAC49898 (EMBL:AL603647) (251 aa) fasta scores: E():
FT                   6.9e-13, 30.08% id in 246 aa. Similar over the entire range
FT                   to Pseudomonas putida pca regulon regulatory protein PcaR
FT                   SW:PCAR_PSEPU (Q52154) (291 aa) fasta scores: E(): 3.1e-12,
FT                   27.64% id in 293 aa"
FT                   /db_xref="GOA:Q7VV84"
FT                   /db_xref="InterPro:IPR005471"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV84"
FT                   /protein_id="CAE43074.1"
FT                   /translation="MLSEINYKNDAIPMQPFSTRPPDPDGLPASQPARRKRAASAAGAA
FT                   SPDFITALARGLDVLRCFRPGVRALGNLDLARLTGLPKPTISRITYTLTELGYLRYHAD
FT                   TGKYSPGYAVLALGFGVLASLEVRELAKAGMSELAVQTGGAVALGAFDNDAMVYVEAMH
FT                   GSPALYLRLPVGYRASLDTAMGRAYLAALPEAARQALLGRLGQAAPPPAVVARAVEELS
FT                   AEGCCYALGEWQSGINAVAVPFASVTGEGVFVMSCGGPLGLLPERTLREQVAPALRQAA
FT                   ARLAGGAG"
FT   misc_feature    complement(193527..194066)
FT                   /note="HMMPfam hit to PF01614, Bacterial transcriptional
FT                   regulator"
FT   misc_feature    complement(194115..194180)
FT                   /note="Predicted helix-turn-helix motif with score 1327
FT                   (+3.71 SD) at aa 111-132, sequence LGNLDLARLTGLPKPTISRITY"
FT   CDS             194523..195488
FT                   /transl_table=11
FT                   /locus_tag="BP2802"
FT                   /product="putative exported protein"
FT                   /note="Similar to several proteins of undefined function
FT                   e.g. Bordetella pertussis hypothetical 34.9 kDa protein
FT                   SW:YBR5_BORPE (O30446) (323 aa) fasta scores: E(): 8.8e-37,
FT                   34.29% id in 312 aa"
FT                   /db_xref="GOA:Q7VV83"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV83"
FT                   /protein_id="CAE43075.1"
FT                   /translation="MLRKGLQLLAALSLSLAAASVSAQSFPARPIKVVSPFPAGGATDV
FT                   LTRLLTERMAKDLGQPMIVENKAGAGTSIGAAYVARENPDGYTLLMATNSTLVTNRYLY
FT                   KELPYDPDSFVPIGMVGIGPLVLLASPKHGFKSTQDIVAYAKQHPGKLTFATFGAGTSS
FT                   HLAAELFKKQAGIDILHVPFKGATQALPALISGDVDLFFDMVATGMPQAEAGKIDVFAI
FT                   TSPTRLATLPKLATLTEQGYPNEMTAWFTFVAPHGTPEAVRARLEQALQATLKDETVRT
FT                   KMLAMGIDPRSGTAQELSTQMKNEQPVVSQLIKQANIVLQ"
FT   misc_feature    194523..194591
FT                   /note="Signal peptide predicted for BP2802 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.947 between residues 23 and 24"
FT   misc_feature    195399..195464
FT                   /note="Predicted helix-turn-helix motif with score 1191
FT                   (+3.24 SD) at aa 293-314, sequence GTAQELSTQMKNEQPVVSQLIK"
FT   CDS             195659..196669
FT                   /transl_table=11
FT                   /locus_tag="BP2803"
FT                   /product="putative integral membrane protein"
FT                   /note="no significant database hits"
FT                   /db_xref="GOA:Q7VV82"
FT                   /db_xref="InterPro:IPR002656"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV82"
FT                   /protein_id="CAE43076.1"
FT                   /translation="MPTIEDRYARLDAARWLAALAVVLLHSAAQTVSDPAAYGSHAWLA
FT                   ANLYDSAARWCVPVFVMVSGALLLDPDQPHDARRFYSRRMARVCAPLLFWTLFYLAWRT
FT                   ALDWWDDGRLDFSFWPRKVAEGAPYYHLWYLYMIVGLYLFAPLVRLLYARSQPRARALW
FT                   VVGILGVAVLDALYRRALGGGNGLFLTWFLPYLGYFVAGRLIFDGELRMPRPGLVLAAS
FT                   VAATAWGVSALSDSRALDLYFYDYFSVTVPLMSLAAFQLIVGSPRLPALPALAPLTFGI
FT                   YLIHPLFLDLAHRIGAARAWRPDAWGVPAITAAVFALSALASWMLRRHRLTRRLV"
FT   misc_feature    join(195695..195754,195812..195865,195923..195976,
FT                   196046..196114,196133..196189,196217..196276,
FT                   196301..196354,196382..196450,196469..196525,
FT                   196568..196636)
FT                   /note="10 probable transmembrane helices predicted for
FT                   BP2803 by TMHMM2.0 at aa 13-32, 52-69, 89-106, 130-152,
FT                   159-177, 187-206, 215-232, 242-264, 271-289 and 304-326"
FT   CDS             196817..197968
FT                   /transl_table=11
FT                   /locus_tag="BP2804"
FT                   /product="putative iron-sulfur protein"
FT                   /note="Similar to Bordetella bronchiseptica AlcE, involved
FT                   in the iron siderophore alcaligin biosynthesis,
FT                   SWALL:O52833 (EMBL:AJ000061) (397 aa) fasta scores: E():
FT                   3.3e-120, 71.57% id in 380 aa. Also similar to BP2460,
FT                   71.842% identity in 380 aa overlap."
FT                   /db_xref="GOA:Q7VV81"
FT                   /db_xref="InterPro:IPR017941"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV81"
FT                   /protein_id="CAE43077.1"
FT                   /translation="MTDIGRMAHVVPARTQLPVSAYFDEARFAREQELIFKQSSLYVGH
FT                   QKLVPELGDWRTLVQEDGGRALVRNQQGVELVSNVCRHRQALMLGGEAGNVSGNANTRG
FT                   SLKDTGGNIVCPLHRWTYNDRGKLLGAPQFDATPCMNLQRFRLRDCHGLLFEGPRDPAA
FT                   DMAPLFARPEFDFGDYVLDHVEVHQCNYNWKTFIEVYLEDYHVGPFHPGLGRFVTCDDL
FT                   AWEFNDWYSLQRVGVHQALAQPGSAVYKQWHDRLLDFRAGQAPDFGAMWVTYFPTHMIE
FT                   LYPHVLVLSTLYPKSPQETLNVVEFYYPEEIVAFEREFVEAQRAAYMETAIEDDEIAER
FT                   MDAGRKALMLRGANETGPYQSPMEDGMQHFHEWYRRVMGETED"
FT   misc_feature    196994..197215
FT                   /note="HMMPfam hit to PF00355, Rieske [2Fe-2S] domain"
FT   CDS             complement(join(197965..198051,198055..198915))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2805"
FT                   /product="transposase (Pseudogene)"
FT                   /note="Pseudogene. Transposase for IS481 element. This
FT                   transposase appears to have an in-frame stop codon."
FT                   /db_xref="PSEUDO:CAE43078.1"
FT   repeat_region   197965..197996
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   complement(197965..199016)
FT   misc_feature    complement(198055..198534)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   repeat_region   complement(198986..199016)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(199111..200583)
FT                   /transl_table=11
FT                   /locus_tag="BP2806"
FT                   /product="putative cation transport protein"
FT                   /note="Similar to many putative Mg transporters e.g.
FT                   Pseudomonas aeruginosa probable Mg transporter MgtE or
FT                   Pa0913 TR:Q9I544 (EMBL:AE004525) (482 aa) fasta scores:
FT                   E(): 7.3e-87, 55.36% id in 475 aa"
FT                   /db_xref="GOA:Q7VV80"
FT                   /db_xref="InterPro:IPR006668"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV80"
FT                   /protein_id="CAE43079.1"
FT                   /translation="MTQSSATPKPPATPRRLDPEDAQHALAEVQECLRRQHLVEDLVHR
FT                   QEQGDDKAHLVEDLVHRQHEAELATLINGLHPADIAFILESLPKDERQTVWRLVSTEHD
FT                   ADVLIEVEDWVRESLIEAMDRQDLVAATGSMDADELADLAPDLPPDVVAEVQKGLTEEE
FT                   RAQLLEAMGYPEDSVGAIMDFEMVRVREDVSLEVVLRYLRRLHELPDHTDQIFVVDRQD
FT                   KLQGVLPIATLLVSEPDTEVRAVMNSDFLTLGPLDSDADAASAFERYDLVSAPVTDEQG
FT                   RLIGRVTIADVVDVIQEDSQEQALSRAGLQEEDIFAPVLMALRNRAPWLLFNLCTAATA
FT                   SFVASRFEDTVSHIVILAFLMSIVAGIGGNSGNQTMTMIIRALAVGRITGRNLWQLVKR
FT                   EMLVTLLVGLCGSLVAALFAWAISDSLSIAVVMMAAMICNMLVGASVGVMVPMLRARFG
FT                   KDPAIGSSVLLTFATDSLGFFIFLGLATIFLL"
FT   misc_feature    complement(199129..199506)
FT                   /note="HMMPfam hit to PF01769, Divalent cation transporter"
FT   misc_feature    complement(join(199129..199194,199234..199299,
FT                   199315..199380,199468..199533))
FT                   /note="4 probable transmembrane helices predicted for
FT                   BP2806 by TMHMM2.0 at aa 350-372, 401-423, 428-450 and
FT                   463-485"
FT   misc_feature    complement(199693..199854)
FT                   /note="HMMPfam hit to PF00571, CBS domain"
FT   misc_feature    complement(199870..200046)
FT                   /note="HMMPfam hit to PF00571, CBS domain"
FT   CDS             complement(200594..201004)
FT                   /transl_table=11
FT                   /locus_tag="BP2807"
FT                   /product="putative thioesterase"
FT                   /note="Similar to several putative thioesterases e.g.
FT                   Escherichia coli putative acyl-CoA thioester hydrolase
FT                   precursor YciA SW:YCIA_ECOLI (P04379) (132 aa) fasta
FT                   scores: E(): 1.3e-15, 43.65% id in 126 aa"
FT                   /db_xref="InterPro:IPR006683"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV79"
FT                   /protein_id="CAE43080.1"
FT                   /translation="MTNPPKSPFTSLPSGREPVLRVMPMPADANIHGDVFGGWIMAQVD
FT                   IAGSIPAARRAAGRVATVAVNAFQFKQPVFVGDLLSFYTSITRTGTTSVTVSVEVYAER
FT                   QRLDAEVVKVTEAVLTYVATDEARRSRPLPTL"
FT   misc_feature    complement(200603..200992)
FT                   /note="HMMPfam hit to PF01662, Cytosolic long-chain
FT                   acyl-CoA thioester hydrolase"
FT   CDS             complement(201068..202114)
FT                   /transl_table=11
FT                   /locus_tag="BP2808"
FT                   /product="putative integral membrane protein"
FT                   /note="Similar to severale.g. Pseudomonas aeruginosa
FT                   hypothetical protein Pa5383 TR:Q9HTI1 (EMBL:AE004951) (355
FT                   aa) fasta scores: E(): 1.5e-45, 42.45% id in 351 aa"
FT                   /db_xref="GOA:Q7VV78"
FT                   /db_xref="InterPro:IPR018383"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VV78"
FT                   /protein_id="CAE43081.1"
FT                   /translation="MTTTTSTLPLPTPWRDKLNGILFVALMAAAVVQLADLPFIRQFGF
FT                   SPLVVGIVCGMLYGNFLRGTMPADWGAGVHFTARRLLRIAVAFYGLNISIQQIAAVGLP
FT                   GLAVSVGVVASTLLIGTVAGQRLLGLDRDTAMLTAAGSAICGAAAVLAFEPTLRAAPHK
FT                   SAVAVATVVLFGTLSMFLYPVIYHAGWLPFDTQALGIYIGGTVHEVAQVVGAASNIDPA
FT                   TTEVATIVKMTRVALLVPVLLVLGFWLRASAAAGADGKSHAKLPVPWFAIGFLVLAIVN
FT                   SLDILPSDLVTAIRKLDVFVLTMAMTALGIETRFAQIRKAGPRVMALGLVLYAWLVFGG
FT                   YGIVKLAT"
FT   misc_feature    complement(join(201083..201148,201161..201217,
FT                   201257..201313,201344..201409,201470..201526,
FT                   201557..201622,201644..201709,201755..201820,
FT                   201929..201985,201998..202054))
FT                   /note="10 probable transmembrane helices predicted for
FT                   BP2808 by TMHMM2.0 at aa 20-39, 43-62, 98-120, 135-157,
FT                   164-186, 196-215, 235-257, 267-286, 299-318 and 322-344"
FT   misc_feature    complement(201332..201355)
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   CDS             202221..203099
FT                   /transl_table=11
FT                   /locus_tag="BP2809"
FT                   /product="putative transcriptional regulator"
FT                   /note="Similar to many transcriptional regulators e.g.
FT                   Chromatium vinosum rubisco operon transcriptional regulator
FT                   RbcR SW:RBCR_CHRVI (P25544) (302 aa) fasta scores: E():
FT                   1e-21, 36.96% id in 257 aa"
FT                   /db_xref="GOA:Q7VV77"
FT                   /db_xref="HSSP:1IXC"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV77"
FT                   /protein_id="CAE43082.1"
FT                   /translation="MTPEQLLTFASVADAGNISRAAELLHLSQPAVSGQLRMLQDWFGE
FT                   PLYRRSGHGIVLTAAGERLAEHARQLRQVYSQAGALRDAWRGLETGSLRLGASTTPASY
FT                   LLPGLVAAFRARYPAVGVHLSDGNTRQIVERLPSLDLAFIEGEVPAGLPADTVVHPWRQ
FT                   DEVVAIVRSDHTLAGNGAATLRDLAAWPQVTREPGSGVRGLVERAFASAGLAPAVGLEL
FT                   AGVEGVKQAVRAGLGVGFVSIMSVRHEDGSLATLRLLPRPLTRTLSILAPHASAAARAT
FT                   QRFLDACLALP"
FT   misc_feature    202227..202649
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family"
FT   misc_feature    202266..202331
FT                   /note="Predicted helix-turn-helix motif with score 1718
FT                   (+5.04 SD) at aa 16-37, sequence GNISRAAELLHLSQPAVSGQLR"
FT   CDS             complement(203113..204309)
FT                   /transl_table=11
FT                   /locus_tag="BP2810"
FT                   /product="putative hydrolase"
FT                   /note="Similar to many e.g. Pseudomonas aeruginosa probable
FT                   hydrolase Pa2922 TR:Q9HZS5 (EMBL:AE004718) (389 aa) fasta
FT                   scores: E(): 3.3e-76, 49.87% id in 395 aa and to
FT                   Arabidopsis thaliana IAA-amino acid hydrolase 3 precursor
FT                   Iar3 or Ill1 or At5g56650 SW:ILR3_ARATH (P54969) (438 aa)
FT                   fasta scores: E(): 1.6e-50, 40.62% id in 384 aa. Also
FT                   similar to BP3857 (57.179% identity in 397 aa overlap), and
FT                   to BP3036 (49.873% identity in 393 aa overlap)"
FT                   /db_xref="GOA:Q7VV76"
FT                   /db_xref="InterPro:IPR010168"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV76"
FT                   /protein_id="CAE43083.1"
FT                   /translation="MKLIEPIVAWRQDIAAIRRDIHAHPELAFEEFRTADVVAARLQEW
FT                   GIEVDRGLGGTGVVGIIRGTREGPRAVGLRADMDALPMQEANTFEHASRNPGKMHACGH
FT                   DGHTAMLLAAARFLSQQRDFAGTVYVIFQPAEEGGGGAKRMIDDGLFTRFPMEAVFGMH
FT                   NWPGMKVGQFGLTAGPIMASSNEFAIHIKGKGTHAGMPHLGVDPVMAAVQLAQSLQTIV
FT                   TRNRNPLDAAVLSITQIHTGSADNVVPNEAVMRGTVRTFTLETLDLIERRMGEITRLTC
FT                   AALDCEGELEFRRNYPPTINHPAESAFCAGVMRGIVGAENVNDHVQPTMGAEDFAFMLQ
FT                   DKPGCYVWIGNGSGDHRDAGHGAGPCMLHNGSYDFNDELLPLGATYWVELARQWLARP"
FT   misc_feature    complement(203323..204279)
FT                   /note="HMMPfam hit to PF01546, Peptidase family
FT                   M20/M25/M40"
FT   CDS             204371..206062
FT                   /transl_table=11
FT                   /gene="fadD"
FT                   /locus_tag="BP2811"
FT                   /product="long-chain-fatty-acid--CoA ligase"
FT                   /EC_number="6.2.1.3"
FT                   /note="Similar to Escherichia coli
FT                   long-chain-fatty-acid--CoA ligase FadD SW:LCFA_ECOLI
FT                   (P29212) (561 aa) fasta scores: E(): 4e-115, 54.93% id in
FT                   557 aa"
FT                   /db_xref="GOA:Q7VV75"
FT                   /db_xref="InterPro:IPR000873"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV75"
FT                   /protein_id="CAE43084.1"
FT                   /translation="MEANTMLRPWLAHYPAGVPHEISPQDYTSLTDLLDQACRRHAGQV
FT                   ACRSMGSDMTYAQLDAHARHFAAWLQGRGLARGARVALMMPNVPAYLVCLLGTLRAGMV
FT                   VVNVNPLYKADELQRQLLDSGAETIVILENFAHTLQAVPDRGALSHVVVVGPGDLLGGL
FT                   KAPLVNLAARYVKKLIPPWRIDGAHRLPDALRDGARATFTPPALGMDDLAVLQYTGGTT
FT                   GVPKGAMLSHGNLVANVLQTEAVAQPVLHDLHGRQLTIISALPLYHVFAMTVCGLYGMH
FT                   AGMRNLLVINPRDQAALIVAWRQAPINIFPGVNTLFNALVNNPDFAKLDFTDLRLTLGG
FT                   GMAVQRQVAERWLELTGHPLIEGYGLSETSPVATVNPTDAKTYSGSIGLPLPSTDVAIL
FT                   DDDGAPVPLGERGEVAIRGPQVMLGYWQKPEETRNVMTADGFFLTGDIGIMDEAGYTRI
FT                   VDRKKDMIAVSGFKVYPNEVEAVIAAHPGVLECAVIGVPDEHSGEAVKVFVVKKDPALT
FT                   AEAVLQWCEERLTGYKRPRHVEFRDELPKSNVGKILRRELRPEAGS"
FT   misc_feature    204533..205849
FT                   /note="HMMPfam hit to PF00501, AMP-binding enzyme"
FT   misc_feature    205013..205048
FT                   /note="ScanRegExp hit to PS00455, Putative AMP-binding
FT                   domain signature. Confirmed by InterPro eMOTIF pattern
FT                   match."
FT   CDS             complement(206059..207009)
FT                   /transl_table=11
FT                   /locus_tag="BP2812"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTA3"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTA3"
FT                   /protein_id="CAE43085.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS"
FT   repeat_region   206059..206090
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   complement(206059..207111)
FT   misc_feature    complement(206095..206628)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   misc_feature    complement(206686..206751)
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   repeat_region   complement(207080..207111)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(207130..208125)
FT                   /transl_table=11
FT                   /locus_tag="BP2813"
FT                   /product="inositol monophosphatase-family protein"
FT                   /note="Similar in the C-terminus to many extragenic
FT                   suppressor proteins e.g. Escherichia coli extragenic
FT                   suppressor protein SuhB or SsyA or B2533 SW:SUHB_ECOLI
FT                   (P22783) (267 aa) fasta scores: E(): 2.4e-20, 41.87% id in
FT                   277 aa. Also similar to Vibrio cholerae inositol
FT                   monophosphate family protein vc0745 TR:Q9KTY5
FT                   (EMBL:AE004160) (288 aa) fasta scores: E(): 3.7e-16, 39.24%
FT                   id in 265 aa. Also similar to BP1902, 40.000% identity
FT                   (43.200% ungapped) in 270 aa overlap."
FT                   /db_xref="GOA:Q7VV74"
FT                   /db_xref="HSSP:1IMD"
FT                   /db_xref="InterPro:IPR017955"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV74"
FT                   /protein_id="CAE43086.1"
FT                   /translation="MDKHHAVATKYLAAGPNSPWLRNALRAWAYTWAMQTSAQRSPASA
FT                   TLDLGAAVDAAVTAAHAGAAILQSYAHHRSDLVIDRKARNDLVSQADRESEAAVISVLR
FT                   ERTPQFGIVAEETGGAAQGPATTWYIDPLDGTTNYLHGIPHYAVSIALVAHAGTRVVAG
FT                   ADLQEDTPVIGVVYDPSSEELFTAVHGIGSWLNGHRISCSRTSTLDDAVLATGFPFRDF
FT                   SFAHQYMPMLHDAIRRTRGVRRMGAAALDLAWTACGRYDGYWEMGLAPWDVAAGTLLVR
FT                   EAGGVCTDMMRQQSWPSGGRVVAGNRHIHGALFDMVSPHLDAPAPDSSQA"
FT   misc_feature    complement(207259..207792)
FT                   /note="HMMPfam hit to PF00459, Inositol monophosphatase
FT                   family"
FT   misc_feature    complement(207271..207315)
FT                   /note="ScanRegExp hit to PS00630, Inositol monophosphatase
FT                   family signature 2. Confirmed by InterPro eMOTIF pattern
FT                   match."
FT   misc_feature    complement(207703..207744)
FT                   /note="ScanRegExp hit to PS00629, Inositol monophosphatase
FT                   family signature 1. Confirmed by InterPro eMOTIF pattern
FT                   match."
FT   CDS             join(208157..209173,209176..210009)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2814"
FT                   /product="conserved hypothetical protein (pseudogene)"
FT                   /note="Pseudogene. This CDS appears to contain a deletion
FT                   that has lead to a shift in reading frame around codon 339.
FT                   The sequence has been checked and is believed to be
FT                   correct. Similar to several proteins of undefined function
FT                   e.g. Pseudomonas aeruginosa hypothetical protein Pa3456
FT                   TR:Q9HYF0 (EMBL:AE004766) (654 aa) fasta scores: E():
FT                   3e-34, 38.52% id in 649 aa."
FT                   /db_xref="PSEUDO:CAE43087.1"
FT   variation       209175
FT                   /note="16 bp deletion in pertussis relative to
FT                   parapertussis and bronchiseptica"
FT   CDS             210304..212529
FT                   /transl_table=11
FT                   /locus_tag="BP2815"
FT                   /product="hypothetical protein"
FT                   /note="Weakly similar to several e.g. Thermotoga maritima
FT                   alpha-xylosidase Tm0308 TR:Q9WYE4 (EMBL:AE001712) (764 aa)
FT                   fasta scores: E(): 2.3e-34, 25.7% id in 607 aa"
FT                   /db_xref="GOA:Q7VV73"
FT                   /db_xref="InterPro:IPR000322"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV73"
FT                   /protein_id="CAE43088.1"
FT                   /translation="MPPKFDFAHTTQLDTVELLTSRPSRIDFDAGDGLHLVVEAHAPGV
FT                   YRLRCGEASLLTDEKSSARARAVAEMLLARQEAVGEATLTPRDDGGGWRIAQGDTTLEV
FT                   LSDPVRVKLYRGDQEVFASEVSAHTPAFGHNALDETDEAVWTVGLGLEGAEPVYGLGET
FT                   PGDLNRRGEAVVSDDPEHRALPLAWSPRGWGVYANTMRRVEHAVGLEPAEGAYVLTIDD
FT                   PVLDLFLFVGEPAEILNQYTALTGRAGQPVLWAMGAWLQQADGQMPTETAALVARLRDQ
FT                   QIALDAVTLALPAAWSFQADKPVLEWDAQRFPDARQMLALFHKHHVHVAASGFPGVLKS
FT                   SLLFEELEDRGWLLTRDDGSAQVFDGNAATGGQPYGLLDLSYRDAYAMWVERHRQLIED
FT                   GLDAPACDAQIAIPDGVSARNGETGPALRTMYPLLARRALFDAVAGLKVPPEGVVPSTD
FT                   LFPAAQRLPWQVGPRVTNDWAGLEHSLRTALSIGASGVPVQVHALGSAQAPLEGMTAEL
FT                   YLRWLGACVLSANFSFQGVPGLLPDAFGEEALAHARTWMQWRYRLIPYVLGAIEDSART
FT                   GLPVQRSMAMSFPHDPHAHAWDLQYLLGPALLVAPVTQPGKQVRVYLPKGDAWWDLNTG
FT                   HRYEGGTTWTVECELDRYPVFGREGHMLCLGPAAQHTGEFNSARILDEVWMFGMPVHNP
FT                   VVMRNKIRVMQMQGSSYIKGLEGLRILPSEGLEVKRRGAEVRISRAR"
FT   misc_feature    211930..212286
FT                   /note="HMMPfam hit to PF01055, Glycosyl hydrolases family
FT                   31"
FT   CDS             212694..213782
FT                   /transl_table=11
FT                   /locus_tag="BP2816"
FT                   /product="ABC transport protein, ATP-binding component"
FT                   /note="Similar to Escherichia coli ATP-binding protein ABC
FT                   SW:ABC_ECOLI (P30750) (343 aa) fasta scores: E(): 2.1e-49,
FT                   44.28% id in 350 aa"
FT                   /db_xref="GOA:Q7VV72"
FT                   /db_xref="HSSP:1B0U"
FT                   /db_xref="InterPro:IPR017908"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VV72"
FT                   /protein_id="CAE43089.1"
FT                   /translation="MIHIENLSKTYATPHGRFEALRGINLHIQQGEVFGIIGPSGAGKS
FT                   TLVQCINLLERPDQGSIAIGGQALVGLGEAQLRNQRRRIGMVFQGFNLLARRTVYGNVA
FT                   LPLEIAGVARAEIPARVERLLALVGLEHLRDRYPSQISGGQKQRVGIARALANDPDVLL
FT                   SDEATSALDPETTHNILALLRDINRKTGVTVVMITHQMEVVREICDRVAVLSHGEVVEL
FT                   GSTREVFAAPRHEVTRAMVSAATASDLSEATLAAVKQRIDALAAAEPGRAVRLWRLSLK
FT                   GVAAGEPLWSDLAREFALDVSLVQARVEDIQGVAVGTLFVLAQGAPHAVKDALAALAAR
FT                   EITVEEIAHEPATDRSAYHVAA"
FT   misc_feature    212784..213344
FT                   /note="HMMPfam hit to PF00005, ABC transporter"
FT   misc_feature    212805..212828
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   misc_feature    213114..213158
FT                   /note="ScanRegExp hit to PS00211, ABC transporters family
FT                   signature. Confirmed by InterPro eMOTIF pattern match."
FT   CDS             213793..214392
FT                   /transl_table=11
FT                   /locus_tag="BP2817"
FT                   /product="ABC transport protein, inner membrane component"
FT                   /note="Similar to many ABC transport proteins e.g.
FT                   Rhizobium loti ABC transporter, permease protein Mll4791
FT                   TR:Q98DA3 (EMBL:AP003005) (218 aa) fasta scores: E():
FT                   3.7e-40, 65.32% id in 199 aa"
FT                   /db_xref="GOA:Q7VV71"
FT                   /db_xref="InterPro:IPR000515"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV71"
FT                   /protein_id="CAE43090.1"
FT                   /translation="MVGVSGAISVVVGIPLGVLLIVTGRGGMLQNLAVNRVLAAVVNGT
FT                   RSVPFIILMVAIIPFTRLLVQTSIGTTAAIVPLAVAAIPFMARVAENAMREVDPGLITA
FT                   ARAMGTSPLQIICKVLLPEALPGLVAATIVTIVSLIGYSAMAGAIGGGGLGDLGIRYGY
FT                   QRFLPEVMLAVVVVLIALVQVVQSLGDWLVRRMSHR"
FT   misc_feature    join(213805..213864,213901..213969,213979..214047,
FT                   214162..214230,214288..214356)
FT                   /note="5 probable transmembrane helices predicted for
FT                   BP2817 by TMHMM2.0 at aa 5-24, 37-59, 63-85, 124-146 and
FT                   166-188"
FT   misc_feature    214069..214281
FT                   /note="HMMPfam hit to PF00528, Binding-protein-dependent
FT                   transport systems inner membrane component"
FT   CDS             214440..215237
FT                   /transl_table=11
FT                   /locus_tag="BP2818"
FT                   /product="putative exported protein"
FT                   /note="Similar to Rhizobium meliloti putative outer
FT                   membrane lipoprotein Smc03157 TR:CAC47467 (EMBL:AL591792)
FT                   (258 aa) fasta scores: E(): 3.2e-54, 58.39% id in 262 aa"
FT                   /db_xref="InterPro:IPR004478"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV70"
FT                   /protein_id="CAE43091.1"
FT                   /translation="MSTKFLKTLAAFALGAAVFAQPALAQDKPLKIGVTAGPHAQIFEV
FT                   VKQEAAKQGLNIQVIEFSDYVQPNVALASGDLDANSYQHQPYLDNANADRGYKLVSIAK
FT                   TVIFPIGVYSKKVKNLNELKDGARIGIPNDPTNGGRALLLLQEHGLIKLRPEAGLKATP
FT                   IDVVENPRKLRFIELDAAQLPRSLDDTDASAVNTNFALEAGLDPSKDALVRESAESPYA
FT                   NVLVVREQDKDRADLRKLVSIYQSAPVREFILGKYKGAVVAAW"
FT   misc_feature    214440..214514
FT                   /note="Signal peptide predicted for BP2818 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.999 between residues 25 and 26"
FT   tRNA            215367..215442
FT                   /note="tRNA Lys anticodon TTT, Cove score 94.70"
FT   repeat_region   215667..216718
FT   CDS             215769..216719
FT                   /transl_table=11
FT                   /locus_tag="BP2819"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTI6"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTI6"
FT                   /protein_id="CAE43092.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIVHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS"
FT   misc_feature    216027..216092
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   misc_feature    216150..216683
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   repeat_region   complement(216688..216718)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             216794..217948
FT                   /transl_table=11
FT                   /locus_tag="BP2820"
FT                   /product="putative alcohol dehydrogenase"
FT                   /note="Similar to several including: Pseudomonas putida
FT                   alcohol dehydrogenase AdhA TR:O68647 (EMBL:AF052750) (382
FT                   aa) fasta scores: E(): 2e-38, 39.06% id in 384 aa and to
FT                   Escherichia coli ethanolamine utilization protein EutG or
FT                   b2453 SW:EUTG_ECOLI (P76553) (395 aa) fasta scores: E():
FT                   9.7e-33, 33.77% id in 379 aa"
FT                   /db_xref="GOA:Q7VV69"
FT                   /db_xref="HSSP:1O2D"
FT                   /db_xref="InterPro:IPR018211"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV69"
FT                   /protein_id="CAE43093.1"
FT                   /translation="MAMFEFCTHARTLVGAGASDALGETLAARWGASRVLLVTDGALVS
FT                   LGLAGRLRDALTSAGHTVAMFDEVVADPPESVVERAITAARDARAQMIVGFGGGSSMDV
FT                   AKLAAAFAGTTQDLRQAYGIGLVAGPRLPLVQVPTTAGTGSEATPIAVVTTGEGAKAGV
FT                   ISPVLYADLAVLDASLTLGLPPAITAATGIDAMVHATEAYTSRVLKNPISDALAREALR
FT                   LLFRALPVACRDGGDLAARQDMLLGAMLAGQAFANAPVGAVHALAYPLGSAFHVPHGLS
FT                   NSLVLGPVLRFNSLRCETQYAELADVILPGHAGGVAEKAAAFVQAMAEVAGALELPTRL
FT                   AQVGVTAADIPALAGLALQQQRLLANNPRDVTLADATRLYEEAF"
FT   misc_feature    216821..217921
FT                   /note="HMMPfam hit to PF00465, Iron-containing alcohol
FT                   dehydrogenase"
FT   misc_feature    217310..217396
FT                   /note="ScanRegExp hit to PS00913, Iron-containing alcohol
FT                   dehydrogenases signature 1."
FT   CDS             complement(218005..218955)
FT                   /transl_table=11
FT                   /locus_tag="BP2821"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTA4"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTA4"
FT                   /protein_id="CAE43094.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS"
FT   repeat_region   218005..218036
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   complement(218005..219057)
FT   misc_feature    complement(218041..218574)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   misc_feature    complement(218632..218697)
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   repeat_region   complement(219026..219057)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(219054..219359)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2822"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to several proteins of undefined function
FT                   e.g. Neisseria meningitidis hypothetical protein Nma1764
FT                   TR:Q9JTI2 (EMBL:AL162757) (97 aa) fasta scores: E():
FT                   0.00035, 30.55% id in 72 aa."
FT                   /db_xref="PSEUDO:CAE43095.1"
FT   misc_feature    complement(219057..219347)
FT                   /note="HMMPfam hit to PF02619, Uncharacterized ACR, YneC
FT                   family COG1359"
FT   CDS             complement(219388..219774)
FT                   /transl_table=11
FT                   /locus_tag="BP2823"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to several proteins of undefined function
FT                   e.g. Pyrococcus abyssi hypothetical 13.6 kDa protein
FT                   pab1062 TR:Q9UY93 (EMBL:AJ248288) (130 aa) fasta scores:
FT                   E(): 4e-10, 32.2% id in 118 aa"
FT                   /db_xref="InterPro:IPR012016"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV68"
FT                   /protein_id="CAE43096.1"
FT                   /translation="MTGQTQGKAVIARERISFWGGFDPQTGRIVDPYSSLRGRDISDCV
FT                   LILLSSKGSSGTSGMLSLATRAGHAPAAMIQVEMDPVTVMGCLVNNIPLLQASGFDPFE
FT                   QIQDGDLVRIDGENGTITLTPGQA"
FT   misc_feature    complement(219406..219774)
FT                   /note="HMMPfam hit to PF01989, Protein of unknown function
FT                   DUF126"
FT   CDS             complement(219824..221068)
FT                   /transl_table=11
FT                   /locus_tag="BP2824"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to several proteins of undefined function
FT                   e.g. Methanothermobacter thermautotrophicus conserved
FT                   protein Mth1421 TR:O27472 (EMBL:AE000904) (399 aa) fasta
FT                   scores: E(): 1.9e-34, 33.5% id in 391 aa"
FT                   /db_xref="InterPro:IPR007506"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV67"
FT                   /protein_id="CAE43097.1"
FT                   /translation="MILTDEQQGLLNGDAGDVVAKYFTWLVEWGRLMGAQRLVKVDSVH
FT                   TSGITAQDRVAGAVSPEARKKTLEQVIEFTSVRMRAPTATHVARVCVEDDKGGGLSAED
FT                   QEFQKLVIDRARDAGIQLTWTCAPYIAGILPSKNQICAWTESSAVVYINAMIGARSTRN
FT                   GTESAIAAAMSGWFPEFGVLLEENRQADLIVEVEAAPSEELCDWGFLGYFAGEVSGLRT
FT                   PVLDQLRAPSLEEAKQLSAAVATGGGCTMFHIAGVTPEAPTLDAVARRPLERIRYTAAD
FT                   RARIAAKLNTLTSERIDYVVLGCPHATLHEIQVIASQLEGRRVSPNVRLEVWTAWAVRA
FT                   VAQRMGLVDVIERAGGKVLTDSCPSITRSGHGRRMVTNAVKQGNYLQGMTGHEVAVGKL
FT                   TDVVSAAMTGTWQGL"
FT   CDS             complement(221065..221775)
FT                   /transl_table=11
FT                   /locus_tag="BP2825"
FT                   /product="putative GntR-family transcriptional regulatory
FT                   protein"
FT                   /note="Similar to Rhizobium meliloti putative GntR-family
FT                   transcription factor Sma1442 TR:AAK65446 (EMBL:AE007265)
FT                   (254 aa) fasta scores: E(): 2.5e-11, 28.82% id in 229 aa"
FT                   /db_xref="GOA:Q7VV66"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV66"
FT                   /protein_id="CAE43098.1"
FT                   /translation="MSSTKRPASRADEITQELVRMIQLADARRIAKLPTEMELAAQLGI
FT                   SRPVIRESLSRLESLNMVTRRQGSGLYIVAPEKRSPEALVLLEQSAPLSPRSIAEAMSV
FT                   RAILELETGRLAALNHRQVDLDRMAAEIERLAATGARGLEAAEADEAFHRALSDAAGNV
FT                   TLSQVLDLFLRLSWRRRVEYFSQPKLGKQSIIEHQEILNAVASGDTDAVSTAIRTHLNS
FT                   AERFWDSKYVKKKS"
FT   misc_feature    complement(221557..221736)
FT                   /note="HMMPfam hit to PF00392, Bacterial regulatory
FT                   proteins, gntR family"
FT   misc_feature    complement(221605..221679)
FT                   /note="ScanRegExp hit to PS00043, Bacterial regulatory
FT                   proteins, gntR family signature. Confirmed by InterPro
FT                   eMOTIF pattern match."
FT   misc_feature    complement(221611..221676)
FT                   /note="Predicted helix-turn-helix motif with score 1050
FT                   (+2.76 SD) at aa 34-55, sequence PTEMELAAQLGISRPVIRESLS"
FT   CDS             complement(221790..222773)
FT                   /transl_table=11
FT                   /locus_tag="BP2826"
FT                   /product="putative exported protein"
FT                   /note="Similar to several e.g. Rhizobium meliloti conserved
FT                   hypothetical protein sma1927 TR:AAK65716 (EMBL:AE007292)
FT                   (330 aa) fasta scores: E(): 8.5e-40, 37.22% id in 317 aa"
FT                   /db_xref="GOA:Q7VV65"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV65"
FT                   /protein_id="CAE43099.1"
FT                   /translation="MERRRLLLGGLAAGIAAPLLARRAMASPRKYPGKPIRMIIPFPAA
FT                   GVTDISARLLAAAMAEELGQTIIPENKPGAAGNIAAKYVADAAPDGYTILFNNSATHGI
FT                   NPTLFKSINFDAERDFTPILYCSSSPNLFVANKNFPGDTIADFVDIARQQGPAVMMALG
FT                   SLGSSQHMAAELLCHVTATQFTTVPYRGGALALQDLIGGTVQTLCDGYPSSIQHIRRGT
FT                   IKALGVTSPERIPSAPDIPAVAETLPGYSAYGWFGLVGPAGMDADVVAVLNQAGNQALQ
FT                   DPELRTRYAEVGATLHGGPPEVFKQHIQDEIKRWREIIIATNAKPE"
FT   misc_feature    complement(222696..222773)
FT                   /note="Signal peptide predicted for BP2826 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.999) with cleavage site
FT                   probability 0.918 between residues 26 and 27"
FT   CDS             223064..223468
FT                   /transl_table=11
FT                   /locus_tag="BP2827"
FT                   /product="hypothetical protein"
FT                   /note="no significant database hits"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV64"
FT                   /protein_id="CAE43100.1"
FT                   /translation="MPCRVVPNTPAIFCHGKRAMFFEDIERIRSALQRSGRKYLTPRLE
FT                   AVLGTVYQLKRGEESVYLCVEPSMAVRKHAHRPHCTIELGAPDWDTVLSGERSIMSKVL
FT                   AGKCGFLKHERRYIMHFSMLLQAVLLEEKQ"
FT   CDS             join(223465..223920,223924..224838)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2828"
FT                   /product="conserved hypothetical protein (pseudogene)"
FT                   /note="Pseudogene. This CDS contains an in-frame TAG stop
FT                   codon. Weakly similar to various hypothetical proteins"
FT                   /db_xref="PSEUDO:CAE43101.1"
FT   CDS             224835..225701
FT                   /transl_table=11
FT                   /locus_tag="BP2830"
FT                   /product="putative ABC transport protein, inner mebrane
FT                   component"
FT                   /note="Similar to Streptococcus pneumoniae ABC transporter,
FT                   permease protein Sp1689 TR:Q97PE2 (EMBL:AE007461) (294 aa)
FT                   fasta scores: E(): 5.9e-31, 31.56% id in 282 aa and to
FT                   Rhizobium loti sugar ABC transporter permease protein
FT                   Mlr7226 TR:Q986S7 (EMBL:AP003011) (298 aa) fasta scores:
FT                   E(): 1.5e-27, 31.84% id in 292 aa"
FT                   /db_xref="GOA:Q7VV63"
FT                   /db_xref="InterPro:IPR000515"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV63"
FT                   /protein_id="CAE43102.1"
FT                   /translation="MKENRLGMLLLSPALLVLTALVIVPLLATIAFSFFDLRLGESSAK
FT                   FIGLQNYGDLLASEPFWRSLRITFLWIVLSVIPQLALGTIIAVLLDRVTRFRAFLRGAI
FT                   FLPWVIPVAVVAYMWQWLLTPETGLVSGIAGGAGLEGLARFPFLSSPDTAFATALIVSA
FT                   WRGIPFVVIMVFAALQGISDEDYHAARVSGGNSIQCFVYVTLPYLKGLLLILAVIRTMQ
FT                   IANNYSLMALLTNGGPADSTRILPLMIYELAFREFALGKASALGVIALALTCLCIAFMM
FT                   RRRHADN"
FT   misc_feature    224835..224918
FT                   /note="Signal peptide predicted for BP2830 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.995) with cleavage site
FT                   probability 0.722 between residues 28 and 29"
FT   misc_feature    join(224871..224939,225033..225101,225138..225206,
FT                   225300..225368,225429..225497,225603..225671)
FT                   /note="6 probable transmembrane helices predicted for
FT                   BP2830 by TMHMM2.0 at aa 13-35, 67-89, 102-124, 156-178,
FT                   199-221 and 257-279"
FT   misc_feature    225363..225596
FT                   /note="HMMPfam hit to PF00528, Binding-protein-dependent
FT                   transport systems inner membrane component"
FT   CDS             225724..226515
FT                   /transl_table=11
FT                   /locus_tag="BP2831"
FT                   /product="ABC transport protein, inner membrane component"
FT                   /note="Similar to many putative membrane transport proteins
FT                   e.g. Rhizobium meliloti putative sugar uptake ABC
FT                   transporter permease protein Smb21458 TR:CAC49684
FT                   (EMBL:AL603646) (291 aa) fasta scores: E(): 2.1e-29, 35.98%
FT                   id in 264 aa"
FT                   /db_xref="GOA:Q7VV62"
FT                   /db_xref="InterPro:IPR000515"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV62"
FT                   /protein_id="CAE43103.1"
FT                   /translation="MAWLVGAVLFVPIAWMVLTAIRPEHELYQVPLRILPGALDMANIQ
FT                   SAWYEKSFGQFFFNSAVNSVLSVLFSMPIGILAGYAFSRFEIRHSKYYRAYVLFAYMVP
FT                   IIILVVPFYLIAVWLNIYNTRMGHVLGLSTYAIPFATWVMIGYFEQLPKEVEHSAAIDG
FT                   ADRMKTLIYILAPMIKPGVVATALLTFILAWDDYIFALILLDSETLRTLPLAIGYLSSD
FT                   YELTDGLMMAMGTITTLPILLLFVFFQKYFVGGMTSGAVKG"
FT   misc_feature    join(225727..225786,225904..225972,226006..226074,
FT                   226102..226170,226231..226299,226408..226467)
FT                   /note="6 probable transmembrane helices predicted for
FT                   BP2831 by TMHMM2.0 at aa 2-21, 61-83, 95-117, 127-149,
FT                   170-192 and 229-248"
FT   misc_feature    226162..226386
FT                   /note="HMMPfam hit to PF00528, Binding-protein-dependent
FT                   transport systems inner membrane component"
FT   CDS             226526..227653
FT                   /transl_table=11
FT                   /locus_tag="BP2832"
FT                   /product="ABC transport protein, ATP-binding component"
FT                   /note="Similar to many putative membrane transport proteins
FT                   e.g. Rhizobium loti sugar binding protein of ABC
FT                   transporter mll1716 TR:Q98JZ1 (EMBL:AP002998) (383 aa)
FT                   fasta scores: E(): 2.7e-41, 40.47% id in 378 aa"
FT                   /db_xref="GOA:Q7VV61"
FT                   /db_xref="HSSP:1G29"
FT                   /db_xref="InterPro:IPR017871"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV61"
FT                   /protein_id="CAE43104.1"
FT                   /translation="MKSTSTAIQLNSVSKSYGGSPILDDISLAIAPGEFVVILGESGCG
FT                   KSTLLKIIAGLEQPTSGAVRIGDAVMTDVPPKDRRLAMVFQSYALYPHLKVWENISFPI
FT                   KMSLWKYAYSLPLLGRLFPNRKRILKTMREAAERAAGKVRLTPLLDRKPRALSGGQRQR
FT                   VALARAIVDGREICLMDEPLSNLDTQLRASTRREIADLHRDLGHTIVYVTHDQTEAMTM
FT                   GTRVILMREGRIEQDGAPAELYEQPATTYAAEFLGSPRINFMRVASAQFSQAAAQAVVT
FT                   LGDGRCPLDPHGDLLIGVRPDHLEITPDAQGEFLFLSSEYLGGKTIVSLKRESGETMVQ
FT                   AFGSDRLDRAQRYSVRFEGRHAMCFDPQSGRRIRE"
FT   misc_feature    226622..227221
FT                   /note="HMMPfam hit to PF00005, ABC transporter"
FT   misc_feature    226643..226666
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   misc_feature    226991..227035
FT                   /note="ScanRegExp hit to PS00211, ABC transporters family
FT                   signature. Confirmed by InterPro eMOTIF pattern match."
FT   CDS             227658..228638
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2833"
FT                   /product="putative membrane protein (pseudogene)"
FT                   /note="Pseudogene. This CDS is disrupted by the insertion
FT                   of IS481. Weakly similar in parts to Streptomyces
FT                   coelicolor putative membrane protein Scm1.27 TR:Q9RD16
FT                   (EMBL:AL133422) (478 aa) fasta scores: E(): 5.7e-08, 29.55%
FT                   id in 335 aa"
FT                   /db_xref="PSEUDO:CAE43105.1"
FT   misc_feature    join(227685..227738,227775..227843)
FT                   /note="2 probable transmembrane helices predicted for
FT                   BP2833 by TMHMM2.0 at aa 10-27 and 40-62"
FT   repeat_region   228629..228660
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   228629..229680
FT   CDS             228731..229969
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2834"
FT                   /product="transposase (Pseudogene)"
FT                   /note="Pseudogene. Transposase for IS481 element. The
FT                   transposase lacks a stop codon, hence it is fused to the
FT                   C-terminal portion of the disrupted CDS"
FT                   /db_xref="PSEUDO:CAE43106.1"
FT   misc_feature    229112..229645
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   repeat_region   complement(229650..229680)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             230011..231273
FT                   /transl_table=11
FT                   /locus_tag="BP2835"
FT                   /product="ABC transport protein, Solute-binding component"
FT                   /note="Similar to Escherichia coli putative ABC transporter
FT                   periplasmic binding protein YcjN precursor or B1310
FT                   SW:YCJN_ECOLI (P76042) (430 aa) fasta scores: E(): 1.3e-18,
FT                   24.53% id in 428 aa"
FT                   /db_xref="GOA:Q7U360"
FT                   /db_xref="InterPro:IPR006059"
FT                   /db_xref="UniProtKB/TrEMBL:Q7U360"
FT                   /protein_id="CAE43107.1"
FT                   /translation="MMKRVASLLVSSLLYSGCAMADGSIVVWMTDSRPGYKKWLETEAA
FT                   AFKAKHPGVKVSVVQMSPNDAYLKIPAAAAAGGLPDVIWTTYGLAPWLDGMKGGKLADV
FT                   SDLIDRLGKNRFDEDALKQWSYRGAVACVPVARTPTYLMHRADLFKKAGLAAPESWEDV
FT                   IRAAQKLNDPANGKYGIAMPGKTDFSPRFAYGMILYSMGGSTFDTQGNPIFESPASIDA
FT                   LKVYKQLYAYSPPGSLNFGFSEIQRALAQGRVAMTISNPSSMATFQRTNRDEGSTLALA
FT                   LPGKVNRTIQNQRGWCIADGKNSQDAKAFVEHLFSTSSFAAYLDAASISSFPVYHDQAA
FT                   YDQFQASNETVKRFPGATDFIRRHTVGTMPGIDGVGLTPKSGDLISSGQIESAINRMLA
FT                   NDMSKQETAAAMQKETLRLLN"
FT   misc_feature    230011..230073
FT                   /note="Signal peptide predicted for BP2835 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.997 between residues 21 and 22"
FT   misc_feature    230029..230097
FT                   /note="1 probable transmembrane helix predicted for BP2835
FT                   by TMHMM2.0 at aa 7-29"
FT   misc_feature    230389..230829
FT                   /note="HMMPfam hit to PF01547, Bacterial extracellular
FT                   solute-binding protein"
FT   misc_feature    230545..230568
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   CDS             231280..232032
FT                   /transl_table=11
FT                   /locus_tag="BP2836"
FT                   /product="putative DNA-binding protein"
FT                   /note="Weakly similar to Rhizobium loti transcription
FT                   regulator Mll9009 TR:Q982L6 (EMBL:AP003015) (269 aa) fasta
FT                   scores: E(): 6.5e-05, 24.41% id in 213 aa"
FT                   /db_xref="GOA:Q7VV60"
FT                   /db_xref="InterPro:IPR005471"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV60"
FT                   /protein_id="CAE43108.1"
FT                   /translation="MAPFSICVSILLLVGDSNRAGVTARYVSEQLGLSLSTAYRWIDML
FT                   RQSGLVVRHPNTRKLHLGPVAFDLGVQAVARPYVPPAIEEVLKPIASRHACRLHLVRCS
FT                   GDYSVLQRTYFDRAELEIVPSKVAAMRLLGIGPAGVCLLSRWPDYEIDRYLVRNQDGLL
FT                   AAGYQGADIRERVRQCRKLGCFVTRSVLTPGYTAVVIDFEVDGVVYGVSAASAGSEGGK
FT                   QFHAIREALDRARASLATQAIPEFALHG"
FT   misc_feature    231343..231408
FT                   /note="Predicted helix-turn-helix motif with score 1718
FT                   (+5.04 SD) at aa 22-43, sequence VTARYVSEQLGLSLSTAYRWID"
FT   CDS             232545..233009
FT                   /transl_table=11
FT                   /locus_tag="BP2837"
FT                   /product="putative MerR-family transcriptional regulator"
FT                   /note="Similar to Pseudomonas aeruginosa redox-sensitive
FT                   transcriptional activator SoxR or Pa2273 SW:SOXR_PSEAE
FT                   (Q51506) (156 aa) fasta scores: E(): 1.6e-33, 62.41% id in
FT                   149 aa"
FT                   /db_xref="GOA:Q7VV59"
FT                   /db_xref="HSSP:1Q06"
FT                   /db_xref="InterPro:IPR015358"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV59"
FT                   /protein_id="CAE43109.1"
FT                   /translation="MMRSAQAVRRPDLLSVGEVAARTGLAVSALHFYEAKGLIASTRTA
FT                   GNQRRYARAVLRRVAVIRVAQRMGLPLAAIAQALATLPTSRAPTVADWRRLSRAWRQEL
FT                   DQRILGLTQLRDQLDGCIGCGCLSLRECPLRNPDDAMARLGAGPHFPPHE"
FT   misc_feature    232593..232661
FT                   /note="ScanRegExp hit to PS00552, Bacterial regulatory
FT                   proteins, merR family signature."
FT   misc_feature    232593..232697
FT                   /note="HMMPfam hit to PF00376, Bacterial regulatory
FT                   proteins, merR family"
FT   CDS             233041..233700
FT                   /transl_table=11
FT                   /locus_tag="BP2838"
FT                   /product="putative hydrolase"
FT                   /note="Similar to many DNA hydrolases responsble for DNA
FT                   damage repair e.g. Escherichia coli DNA-3-methyladenine
FT                   glycosylase I Tag or B3549 SW:3MG1_ECOLI (P05100) (187 aa)
FT                   fasta scores: E(): 6.5e-31, 48.6% id in 179 aa"
FT                   /db_xref="GOA:Q7VV58"
FT                   /db_xref="HSSP:1P7M"
FT                   /db_xref="InterPro:IPR005019"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV58"
FT                   /protein_id="CAE43110.1"
FT                   /translation="MLASVVPELAFLSPRIMDPRTDFADGLTRCGWLDHSVDYVAYHDH
FT                   EWGRPQADDRALFEQLSLEGFQSGLSWRTILNKRAAFRRAFADFDMERVAAFDERRVEA
FT                   LLQDAGIVRHRGKIEAVINNARRALALRDREGSLAAFFWRYEAPPRGADAPFEVLACTA
FT                   ESEALSKALKKQGWSFVGPTTVYAFMQSVGMVNDHHPQCHHHAACEQARYRFQRPD"
FT   CDS             233845..235953
FT                   /transl_table=11
FT                   /locus_tag="BP2839"
FT                   /product="exported protein, conserved"
FT                   /note="Highly similar to several proteins of undefined
FT                   function e.g. Pseudomonas aeruginosa hypothetical protein
FT                   Pa4879 pa4879 TR:Q9HUT4 (EMBL:AE004901) (689 aa) fasta
FT                   scores: E(): 9e-116, 58.92% id in 706 aa"
FT                   /db_xref="InterPro:IPR007844"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV57"
FT                   /protein_id="CAE43111.1"
FT                   /translation="MTRKKKIFLGVAGAVLVLLAAVLVVLATLDWNRLKPTINEQASAA
FT                   LGRPFAIQGDLSVQWACEPGQGGWRGWVPWPHFVVHDVAIANTVWARDPNLLTLRRGEF
FT                   RLAPLPLLRQRVVIRRIQLSGLRADLQRRADGVANWEFTMPDTGEPSPWKVDIDAIGFD
FT                   QGAIRYADAIAQADLDVLVDPLGKPVPFAELAGAPAAGGAADQAAGKADSGKAADAAAP
FT                   AAPPDYAFGWQVNGRYKDLPLEGTGKVGGMLALRDARQPFPVQAEVAIGSTRIAVAGTL
FT                   TDPMSLGALDLRLKLAGASMANLYPLTGVTLPDTPPYSTDGRLVARLQDSKGARFEYRD
FT                   FNGKVGASDLHGDITFALQQPRPRLSGKLSSRLLRMADLGPLIGVQSGGAKSVKAEGEK
FT                   AVAQPADKVLPVQEFRTDRWRVMDADVELRGERIVHSDRLPISDLTAHVLLDDGMLTLA
FT                   PLRFGMAGGSLDATLKLDGREAPMSGNVHLAVRRLRLKQLFPNVQAMQKALGEVNGDVA
FT                   LSGQGNSVAALLGSASGETKLLVNDGVISRALMEIAGLNVGNYVVSKLFGDDEVKINCA
FT                   AADMGMTCGVMTPRVFVIDTENAVVNITGSIDFRKELLNLDIDPDSKGFRLFSLRSPLY
FT                   VKGSFKKPDAGVHVGPLAARGAGAVALSVLLTPAAGLLALIAPSTNDENHCATLLTEMR
FT                   KPARAPRR"
FT   misc_feature    233845..233925
FT                   /note="Signal peptide predicted for BP2839 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.702 between residues 27 and 28"
FT   CDS             complement(235955..236575)
FT                   /transl_table=11
FT                   /locus_tag="BP2840"
FT                   /product="putative TetR-family transcriptional regulator"
FT                   /note="Similar to many proposed regulators e.g. Rhizobium
FT                   loti probable transcriptional regulator Mlr0535 TR:Q98ML2
FT                   (EMBL:AP002995) (204 aa) fasta scores: E(): 6e-33, 51.92%
FT                   id in 208 aa"
FT                   /db_xref="GOA:Q7VV56"
FT                   /db_xref="InterPro:IPR012287"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV56"
FT                   /protein_id="CAE43112.1"
FT                   /translation="MAERGRPRSFERTEALRQAMEVFWSKGYEGASLADLTSAMGINAP
FT                   SLYAAFGSKEALFREAVQRYADTEGARTRRALLEAPDARAAIEGMLLAGAQTCTLNGKP
FT                   PGCLMVLGATAGPAQHAPVRGWLCEHRRTMQDLILQRLEQGRRDGEIGPGADLAALAAF
FT                   YATVLHGMSIQARDGADRAALQAVARQAMHAWDALAHPPAAAR"
FT   misc_feature    complement(236393..236533)
FT                   /note="HMMPfam hit to PF00440, Bacterial regulatory
FT                   proteins, tetR family"
FT   CDS             236667..237419
FT                   /transl_table=11
FT                   /locus_tag="BP2841"
FT                   /product="putative short-chain dehydrogenase"
FT                   /note="Similar to Pseudomonas aeruginosa probable
FT                   short-chain dehydrogenase Pa0182 TR:Q9I6V0 (EMBL:AE004456)
FT                   (250 aa) fasta scores: E(): 1.5e-43, 55.2% id in 250 aa and
FT                   to Bacillus subtilis 3-oxoacyl-[acyl-carrier protein]
FT                   reductase FabG SW:FABG_BACSU (P51831) (246 aa) fasta
FT                   scores: E(): 7.9e-25, 37.86% id in 243 aa"
FT                   /db_xref="GOA:Q7VV55"
FT                   /db_xref="HSSP:1GEG"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV55"
FT                   /protein_id="CAE43113.1"
FT                   /translation="MELAMAALDGKVAFITGASRGIGAAIARRLAADGADIALTYVSAA
FT                   DKAHALVEELRAAGRRAHAYAADAADAGQVREAVARAAADLGRLDILVNNAGIFLAGPV
FT                   EDISADDYDRSMDINVRAVFVATQAALPHLGEGGRIVNIGSCLAGHTGRPGVALYAAGK
FT                   AAVAAFTRALARELGPRGITANVVHPGPIDTDMNPAGTDQAAALVQMLAVPHYGEPADI
FT                   ANMVAYLAGPQARYVTGAELSVDGGYAA"
FT   misc_feature    236697..237251
FT                   /note="HMMPfam hit to PF00106, short chain dehydrogenase"
FT   misc_feature    237309..237398
FT                   /note="HMMPfam hit to PF00678,"
FT   tRNA            237536..237611
FT                   /note="tRNA Lys anticodon CTT, Cove score 88.69"
FT   CDS             237737..237877
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2842"
FT                   /product="hypothetical protein (pseudogene)"
FT                   /note="Pseudogene. This CDS is disrupted by the insertion
FT                   of an IS element.This CDS is highly similar to BP0072
FT                   (fasta scores 64.773% id in 88 aa) although in comparison
FT                   with the predicted product of BP0072 appears to have
FT                   undergone significant deletion and rearrangments events."
FT   repeat_region   237875..238416
FT                   /note="This region represents an insertion in B. pertussis
FT                   relative to both B. parapertussis and B. bronchiseptica. It
FT                   is thought that this region is a novel IS element. There is
FT                   a second copy of this element within B. pertussis genome.
FT                   However, there appears to have been several
FT                   insertion/deletion events that have occured independently
FT                   within these two copies. Consequently it is difficult to
FT                   predict the original form of this IS element."
FT                   /note="This region is repeated between positions
FT                   70337..70541 and 70961..71287"
FT   CDS             join(237978..238082,238082..238360)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2842A"
FT                   /product="transposase (pseudogene)"
FT                   /note="Similar to the 3'ends of many transposases
FT                   including: Rhodobacter capsulatus putative insertion
FT                   element TR:O68064 (EMBL:AF010496) (191 aa) fasta scores:
FT                   E(): 1.3e-22, 61.53% id in 104 aa and Xanthomonas
FT                   campestris insertion element IS476 hypothetical 39.2 kDa
FT                   protein SW:YI61_XANCA (P25438) (346 aa) fasta scores: E():
FT                   8.8e-08, 37.07% id in 89 aa. Note, this CDS is also highly
FT                   similar to the 3' end of BP0073 (fasta scores 87.912% id in
FT                   91 aa)"
FT                   /db_xref="PSEUDO:CAE43115.1"
FT   misc_feature    238073..238348
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   CDS             complement(join(238460..238588,238590..239723,
FT                   239727..240092))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2843"
FT                   /product="putative exported protein (pseudogene)"
FT                   /note="Pseudogene. No significant database hits"
FT                   /db_xref="PSEUDO:CAE43116.1"
FT   CDS             complement(join(240089..240331,241381..241431,
FT                   241433..242323))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2846"
FT                   /product="putative exported protein (pseudogene)"
FT                   /note="Pseudogene. This CDS is disrupted by the insertion
FT                   of IS481 element. No significant database hits."
FT                   /db_xref="PSEUDO:CAE43117.1"
FT   CDS             complement(240334..241284)
FT                   /transl_table=11
FT                   /locus_tag="BP2845"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTA3"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTA3"
FT                   /protein_id="CAE43118.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS"
FT   repeat_region   240334..240365
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   complement(240334..241386)
FT   misc_feature    complement(240370..240903)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   misc_feature    complement(240961..241026)
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   repeat_region   complement(241355..241386)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   misc_feature    complement(242234..242284)
FT                   /note="1 probable transmembrane helix predicted for BP2846
FT                   by TMHMM2.0 at aa 13-30"
FT   misc_feature    complement(242240..242272)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    complement(242243..242323)
FT                   /note="Signal peptide predicted for BP2846 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.845) with cleavage site
FT                   probability 0.333 between residues 27 and 28"
FT   CDS             complement(join(242320..242934,242938..243150))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2847"
FT                   /product="putative exported protein"
FT                   /note="This CDS is disrupted by the insertion of IS481. No
FT                   significant database hits"
FT   repeat_region   243146..243177
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   243146..244198
FT   CDS             243248..244198
FT                   /transl_table=11
FT                   /locus_tag="BP2848"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTI6"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTI6"
FT                   /protein_id="CAE43120.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIVHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS"
FT   misc_feature    243506..243571
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   misc_feature    243629..244162
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   repeat_region   complement(244167..244198)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(244195..245103)
FT                   /transl_table=11
FT                   /locus_tag="BP2849"
FT                   /product="putative LysR-family transcriptional regulator"
FT                   /note="Similar to several transcriptional regulators e.g.
FT                   Escherichia coli hca operon transcriptional activator HcaR
FT                   or PhdR or B2537 SW:HCAR_ECOLI (Q47141) (296 aa) fasta
FT                   scores: E(): 9.7e-08, 27.3% id in 282 aa"
FT                   /db_xref="GOA:Q7VV54"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV54"
FT                   /protein_id="CAE43121.1"
FT                   /translation="MSDLKLFEDLIALAQTGSFVRAAELRHVTHPAFGRRIRALETWAG
FT                   APLVERGRTPVVLTAQGEALLQAAGQVVEQVDRVREQLRSAGRQEERILRIGTGRSLAR
FT                   TLVADWIARLRQRPARLLDGAQVELSTGVMQEMAALLEQGRVDLVCCYEHPALSVQLTP
FT                   GRFRYMTLGIDKLVPVCQADARGRPRHALSEGGPAAPLITYSGGLAMARIAGDRLETFP
FT                   YALAPFVRCDSLDAAHGMAQKGLGIAWLPWSMVAGDCRRGVLAALGGRAEEIAFEVRLY
FT                   RPRTRLSALAEAVWECTQRGR"
FT   misc_feature    complement(244654..245094)
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family"
FT   misc_feature    complement(244960..245052)
FT                   /note="ScanRegExp hit to PS00044, Bacterial regulatory
FT                   proteins, lysR family signature."
FT   CDS             245230..246066
FT                   /transl_table=11
FT                   /gene="panB"
FT                   /locus_tag="BP2850"
FT                   /product="probable 3-methyl-2-oxobutanoate
FT                   hydroxymethyltransferase"
FT                   /EC_number="2.1.2.11"
FT                   /note="Similar to many enzymes involved in Pantothenate
FT                   biosynthesis e.g. Corynebacterium glutamicum
FT                   3-methyl-2-oxobutanoate hydroxymethyltransferase panB
FT                   SW:PANB_CORGL (Q9X712) (271 aa) fasta scores: E(): 3.2e-37,
FT                   46.51% id in 258 aa"
FT                   /db_xref="GOA:Q7VV53"
FT                   /db_xref="InterPro:IPR015813"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VV53"
FT                   /protein_id="CAE43122.1"
FT                   /translation="MSVPTAAKRITTRQLRMRTPDEPIVALTAYTAPIAGLLDAHCDLL
FT                   LVGDSLGMVIYGMETTLPVTVDMMIQHGRAVMRGSQRACVAVDMPFGSYQEDERQAYRN
FT                   AARIMAETGASCVKLEGGAEMASTVAFLVERGIPVMGHVGLKPQSVHGHGGFRTVGRGA
FT                   EAEQVMADAQAIAAAGAFTVVIEGTLEPVARAITEALPVPTIGIGASPACGGQILVSDD
FT                   VLGLFSDFTPRFVKRYAQLGPIIEQAAAAYASEVRARTFPAPEHCTGMPAPDGRPA"
FT   misc_feature    245251..246024
FT                   /note="HMMPfam hit to PF02548, Ketopantoate
FT                   hydroxymethyltransferase"
FT   CDS             246579..247688
FT                   /transl_table=11
FT                   /locus_tag="BP2851"
FT                   /product="outer membrane porin protein precursor"
FT                   /note="Highly similar to the Bordetella pertussis outer
FT                   membrane porin protein precursor (BP0840) SW:OMP_BORPE
FT                   (Q04064) (385 aa) fasta scores: E(): 6.4e-58, 53.72% id in
FT                   389 aa. Also similar to BP0267 (63.345% identity in 281 aa
FT                   overlap), and BP0840 (53.728% identity in 389 aa overlap)."
FT                   /db_xref="GOA:Q7VV52"
FT                   /db_xref="HSSP:1E54"
FT                   /db_xref="InterPro:IPR002299"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV52"
FT                   /protein_id="CAE43123.1"
FT                   /translation="MKKTLLAVALASGFAGTAQAAATSVTLYGLIDSGIGYEQVKGPDG
FT                   FKQSHVGATSGVSSGSRWGLKGAEDLGDGLQAVFTLEAGFNNQTGNSEQSGRLFGRQAT
FT                   VGLSSSAWGKLEFGHQTNMASKYMADISPFGTDYGMAGIGSTFGATKSLRLDNMVMYQS
FT                   PDFSGFRFGLGYSFNADTTKGDNFSTSDNPRVVTAGAKYASGPLTLVATYDRLSPNHAA
FT                   TNGESQSVQEYALGGMYDFEVVKLHAAWGQTFDGWFSGYSMGTNPSFAGYSKLPSLAYK
FT                   DGAKVDSLMLGATVPLGKTKVFGSWQRADPKNDKLTGGDKTYNIFALGATYDLSKRTNL
FT                   YAYAAYGDNYAFHDEVRNTAVAVGLRHRF"
FT   misc_feature    246579..246638
FT                   /note="Signal peptide predicted for BP2851 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.987 between residues 32 and 33"
FT   misc_feature    246732..246899
FT                   /note="HMMPfam hit to PF00267, Gram-negative porin"
FT   misc_feature    247050..247097
FT                   /note="ScanRegExp hit to PS00225, Crystallins beta and
FT                   gamma 'Greek key' motif signature."
FT   misc_feature    247455..247478
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   misc_feature    247530..247685
FT                   /note="HMMPfam hit to PF00267, Gram-negative porin"
FT   CDS             complement(247750..248700)
FT                   /transl_table=11
FT                   /locus_tag="BP2852"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTA3"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTA3"
FT                   /protein_id="CAE43124.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS"
FT   repeat_region   247750..247781
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   complement(247750..248802)
FT   misc_feature    complement(247786..248319)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   misc_feature    complement(248377..248442)
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   repeat_region   complement(248771..248802)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(248893..249675)
FT                   /transl_table=11
FT                   /locus_tag="BP2853"
FT                   /product="probable short chain dehydrogenase"
FT                   /note="Similar to several e.g. Streptomyces exfoliatus
FT                   20-beta-hydroxysteroid dehydrogenase SW:2BHD_STREX (P19992)
FT                   (255 aa) fasta scores: E(): 1e-26, 41.4% id in 256 aa"
FT                   /db_xref="GOA:Q7VV51"
FT                   /db_xref="HSSP:1FJH"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV51"
FT                   /protein_id="CAE43125.1"
FT                   /translation="MTQYWEGKAVVVTGAARGQGAAEVLRLLAAGAIVYALDVLPADDA
FT                   CWRELAEAAGPAASRLHPRVADVAREATWSALAADLAAAGAPLYGLVNNAGITLRKTVT
FT                   ETAPDEWRRLLEINLDGPFLAIRALAPLMPRGAAIVNTSSTAGLTGYFSAAYTASKWGL
FT                   RGLTRAAALELADQGVRVNTVCPGLVETPMIMQPNAVHDAARARLFHDGNRDATPLGRG
FT                   ADPDEIAAAVVFLLGPDASFITGADLPVDGGMTGGGIY"
FT   misc_feature    complement(248926..249018)
FT                   /note="HMMPfam hit to PF00678,"
FT   misc_feature    complement(249100..249654)
FT                   /note="HMMPfam hit to PF00106, short chain dehydrogenase"
FT   misc_feature    complement(249163..249249)
FT                   /note="ScanRegExp hit to PS00061, Short-chain
FT                   dehydrogenases/reductases family signature."
FT   CDS             complement(249689..250438)
FT                   /transl_table=11
FT                   /locus_tag="BP2854"
FT                   /product="probable short chain dehydrogenase"
FT                   /note="Similar to Bacillus subtilis glucose 1-dehydrogenase
FT                   ii ycdF SW:DHG2_BACSU (P80869) (258 aa) fasta scores: E():
FT                   1.7e-26, 38.34% id in 253 aa"
FT                   /db_xref="GOA:Q7VV50"
FT                   /db_xref="HSSP:1GZ6"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV50"
FT                   /protein_id="CAE43126.1"
FT                   /translation="MQYQDLAGKIAVVTGAGGGIGRAIVAALREQGARVVATDLDPQAL
FT                   AQAMRESGQDVDCRALDVADPAASRALADAVAQQYGVLDIWVNNAGFMARMPALELDEQ
FT                   TWQRTLDINLKGTFFGAQAAARHMTRQGSGAIINLSSYAGIKPRPNCADYASAKAGVAH
FT                   LTQCLALEWSPLGVRVNAIAPGFIDTPMSSWMHGDAQTYTEYIARIPSRRLGQPEDIAA
FT                   ATLYLASQASSYVTGHVLMADGGVSKA"
FT   misc_feature    complement(249713..249805)
FT                   /note="HMMPfam hit to PF00678,"
FT   misc_feature    complement(249869..250414)
FT                   /note="HMMPfam hit to PF00106, short chain dehydrogenase"
FT   misc_feature    complement(249932..250018)
FT                   /note="ScanRegExp hit to PS00061, Short-chain
FT                   dehydrogenases/reductases family signature."
FT   CDS             complement(250466..251812)
FT                   /transl_table=11
FT                   /locus_tag="BP2855"
FT                   /product="membrane transport protein"
FT                   /note="Similar to many membrane transport proteins e.g.
FT                   Escherichia coli alpha-ketoglutarate permease KgtP or WitA
FT                   or B2587 SW:KGTP_ECOLI (P17448) (432 aa) fasta scores: E():
FT                   1.3e-45, 34.81% id in 428 aa"
FT                   /db_xref="InterPro:IPR011701"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV49"
FT                   /protein_id="CAE43127.1"
FT                   /translation="MTQQIMETQDLRRRLTSLRAAAVGNALEWFDWTLYGTFSAYLAMN
FT                   LFDPADPTSALLATLGVFAGGFLARPVGGWLFGRIGDRYGRKFTLVLTMCLLALTSLAI
FT                   ALLPTYEQAGVYASVLLFVCRLTQGLAHGGESGVAYTYVAEIAPPARRGLWSSSVFISV
FT                   TLGVMAATALAALLTSMLGKEAMEAWGWRVGFGVGALLGVYALYMRRSASESEVFEEHA
FT                   RQAGGQPAGPAMTRGQALRIARNIVMIAVASNATYYTWVTFAPATAIATRGMDPSGAYT
FT                   ASLIAQLVCLLWLPVCGWLADRYGRKPIVMAFGLGVALAVFPVAHIVTAQPWTLFVAQL
FT                   IGLLVWALLAAIFPAFIAEQVPTQARAMGVGFISSLSVAIFGGTAPYINAWLGAHDLGW
FT                   VYTAYVAALGVMAFIGAFLIRETAGLDLNDIPLPGEPDNAAVSRRAAYN"
FT   misc_feature    complement(250511..251767)
FT                   /note="HMMPfam hit to PF00083, Sugar (and other)
FT                   transporter"
FT   misc_feature    complement(join(250556..250621,250637..250702,
FT                   250742..250807,250823..250888,250910..250975,
FT                   251021..251086,251192..251248,251279..251344,
FT                   251381..251446,251492..251548,251588..251653,
FT                   251684..251749))
FT                   /note="12 probable transmembrane helices predicted for
FT                   BP2855 by TMHMM2.0 at aa 21-43, 53-75, 88-107, 122-144,
FT                   156-178, 188-207, 242-264, 279-301, 308-330, 335-357,
FT                   370-392 and 397-419"
FT   CDS             complement(251838..252767)
FT                   /transl_table=11
FT                   /locus_tag="BP2856"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to several proteins of unknown function e.g.
FT                   Escherichia coli hypothetical 31.7 kDa protein
FT                   SW:YPT2_ECOLI (Q99390) (286 aa) fasta scores: E(): 8.1e-15,
FT                   27.11% id in 284 aa"
FT                   /db_xref="InterPro:IPR008391"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV48"
FT                   /protein_id="CAE43128.1"
FT                   /translation="MSESWQGRAAPNGSAEPIEFMLDGDCIRGTFYRPAGAGAPVPAVV
FT                   LAHGWSMVAGGDLEDYAAAVVNRGLAALTFDFRNLGKSGSLPRQEIDPYRQVEDFRAAI
FT                   SYVRGRPEVDRERIGIWGSSYSGGHALTVAAIDRRVKCVVSQVPTTSGFSAAQRRVRYD
FT                   KAQALQAAFEADREARFAGAEPATLRMVDPDPEAPVAYPGPDSYRYMTGEARRCPQWVN
FT                   AVTLRSLELARTYEPGVYARRIAPTPLLMIVAASDGLTPADLQQDAFNNAQQPKELLLL
FT                   PGGHYSVYTDHFDRTSQAAADWFALHLR"
FT   CDS             252883..253788
FT                   /transl_table=11
FT                   /locus_tag="BP2857"
FT                   /product="putative LysR-family transcriptional regulator"
FT                   /note="Similar to several including: Caulobacter crescentus
FT                   isoleucine biosynthesis transcriptional activator Ilvr or
FT                   Cc3045 SW:ILVR_CAUCR (P52670) (296 aa) fasta scores: E():
FT                   1.2e-18, 33.11% id in 311 aa"
FT                   /db_xref="GOA:Q7VV47"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV47"
FT                   /protein_id="CAE43129.1"
FT                   /translation="MDLRQLDCFLAVASELHFGRAAEKLYMSQSSVSEAVKALERALGA
FT                   PLFDRTSRRVALTPLGETLRQGAAPAVIMLKAALDDCRRQASGKQRRLSIGFLGGGFYE
FT                   LYRPLVAEFTAAHPGVELDFTELTYVTHYAAVADGSVDVAFCRLPLGADGLCHGPIVLR
FT                   DQRMLCVPHDHPFAAAHLLDPELLARERLVRMVPGSVNQEWQDYHFPRHTPRGKPIGDG
FT                   PIVRTVREGIEAVNARQGLLMLTKRAASYYATPQIAFVEIDLPAMPSALVRRIDDHRPI
FT                   LQELDALLLRIAMRYGVAPG"
FT   misc_feature    252889..253317
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family"
FT   misc_feature    252928..252993
FT                   /note="Predicted helix-turn-helix motif with score 1448
FT                   (+4.12 SD) at aa 16-37, sequence LHFGRAAEKLYMSQSSVSEAVK"
FT   misc_feature    252931..253023
FT                   /note="ScanRegExp hit to PS00044, Bacterial regulatory
FT                   proteins, lysR family signature."
FT   CDS             complement(253806..255005)
FT                   /transl_table=11
FT                   /gene="tyrB"
FT                   /locus_tag="BP2858"
FT                   /product="aromatic-amino-acid aminotransferase"
FT                   /EC_number="2.6.1.57"
FT                   /note="Similar to Escherichia coli aromatic-amino-acid
FT                   aminotransferase TyrB or B4054 SW:TYRB_ECOLI (P04693) (397
FT                   aa) fasta scores: E(): 2.7e-89, 59.44% id in 397 aa. Also
FT                   similar to BP1795, 49.622% identity (49.622% ungapped) in
FT                   397 aa overlap."
FT                   /db_xref="GOA:Q7VV46"
FT                   /db_xref="HSSP:1ART"
FT                   /db_xref="InterPro:IPR016160"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV46"
FT                   /protein_id="CAE43130.1"
FT                   /translation="MFEHVQAYPGDPILSLNEDFQKDPRVGKVNLTIGIYFDEAGRIPV
FT                   MAAAREAEAALLADIGPRPYLPMAGLPAYRDLVQELVFGAGSAARRAGRIATVQTLGGS
FT                   GALKVGADFLKRYFPKSEVWVSDPSWENHRTIFEGAGFAVHTYPYYDDASGGLRFDEML
FT                   ATVGGLPAGSVVLLHACCHNPTGVDLDRAQWDALIPVLRERGLIAFVDMAYQGFGDGLD
FT                   DDAYAVRALAEAGVTCVVANSFSKNFSLYGERCGGLSVVCETAEQAGCVLGQLTSTIRA
FT                   IYSNPPTHGARIVAQVLGTPALRQSWEAELGAMRERIQAMRRAIHDGLAGRVEPRMLQR
FT                   YLSQRGMFTYTGLGAEQVETLRRDQGVYLLRSGRMCVAGLNRDNVAVAADAIASVLARG
FT                   "
FT   misc_feature    complement(253812..255014)
FT                   /note="HMMPfam hit to PF00155, Aminotransferase class I and
FT                   II"
FT   misc_feature    complement(254229..254264)
FT                   /note="ScanRegExp hit to PS00070, Aldehyde dehydrogenases
FT                   cysteine active site."
FT   CDS             complement(255078..255770)
FT                   /transl_table=11
FT                   /locus_tag="BP2859"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to many proteins of unknown function e.g.
FT                   Escherichia coli O157:H7 hypothetical 25.8 kDa protein
FT                   Ecs2700 TR:BAB36123 (EMBL:AP002559) (231 aa) fasta scores:
FT                   E(): 3.5e-32, 50.46% id in 214 aa"
FT                   /db_xref="GOA:Q7VV45"
FT                   /db_xref="InterPro:IPR006674"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV45"
FT                   /protein_id="CAE43131.1"
FT                   /translation="MTNPGDGAAGAADRATLDHWRPRLAAIAAAAGQDDAAHDLGHLRR
FT                   VWDAARAMLQAHPEADALVVLAASYLHDLVNLPKNHPERHLASRQAAAAARERLARAGF
FT                   PAARLDAVAHAIEAHSFSAGIAPRTIEARIVQDADRLDALGPVGLVRMFHVGGSLGRAL
FT                   AHPSDPLAAQRALDDSRYTLDHIEAKLARLPHGMQTEAGRRLGEQRLAWLRDFRAAFSA
FT                   QWGGGQLR"
FT   misc_feature    complement(255339..255656)
FT                   /note="HMMPfam hit to PF01966, HD domain"
FT   CDS             complement(255819..258245)
FT                   /transl_table=11
FT                   /locus_tag="BP2860"
FT                   /product="probable cation-transporting ATPase"
FT                   /note="Highly similar to Rhizobium meliloti
FT                   copper-transporting ATPase ActP SW:ATCU_RHIME (Q9X5X3) (827
FT                   aa) fasta scores: E(): 1.5e-179, 66.58% id in 802 aa, and
FT                   to Synechococcus sp cation-transporting ATPase PacS
FT                   SW:ATCS_SYNP7 (P37279) (747 aa) fasta scores: E():
FT                   2.3e-110, 49.33% id in 748 aa. Note the differing predicted
FT                   N-termini of these proteins. The Bordetella protein is
FT                   predicted to be ~18 aa shorter than the other two examples.
FT                   The upstream IS481 element may offer one explanation for
FT                   this. It is also not clear if the insertion of this IS
FT                   element affects the expression of this CDS."
FT                   /db_xref="GOA:Q7VV44"
FT                   /db_xref="HSSP:1P6T"
FT                   /db_xref="InterPro:IPR008250"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV44"
FT                   /protein_id="CAE43132.1"
FT                   /translation="MTCASCVGRVERALKAVPGVSDAVVNLATERADVRFAGAPDVGAA
FT                   VQAVEQAGYAVAASTMELAVSGMTCASCVGRVERALKAVPGVRAASVNLATERAHVEVA
FT                   GAVAPQALVQAVAAAGYEARPLDPGGAAADAAARRQAAELQGLRRALIVAAVFALPVFV
FT                   LEMGSHMIPAFHHAVAGSIGVQNSWYIQFVLASIVLFGPGLRFFRKGVPALLRGAPDMN
FT                   SLVAVGTAAAYAYSVIATFAAGVLPPGTVNVYYEAAAVIVALILLGRYLEARAKGNTSE
FT                   AIKRLMGLQAKTARVRRDGATVEVPIAQVAAGDVVEVRPGERVPVDGQVTEGTSFVDES
FT                   MISGEPVPVEKQPGAEVVGGTVNQNGALALRATKVGGDTVLAQIIRMVEQAQGSKLPIQ
FT                   ALVDRITMWFVPAVMAVALATFAIWFVFGPDPALTFALVNAVAVLIIACPCAMGLATPT
FT                   SIMVGTGRAAQLGVLFRKGEALQALKDARVVAVDKTGTLTKGRPELTDLVLAEGFERAA
FT                   VLGKVAAVEAKSEHPIARAIVDAAQVEGARLGAIEAFESITGYGVAARVDGARVEIGAD
FT                   RYMARLGLDVAVFAAEAARLGDEGKTPLYAAIDGRLAAMIAVADPIKDTTAAAIRALHG
FT                   LGLKVAMITGDNRRTGEAIARQLGIDEVIAEVLPDGKVDAVKRLKAEHGALAYVGDGIN
FT                   DAPALAEADVGIAIGTGTDIAIEAADVVLMSGDLGGVPNAIALSQATMANIRQNLFWAF
FT                   AYNVALIPVAAGVLYPVNGSLLSPVFAAGAMALSSVFVLSNALRLRRFAAPFAAR"
FT   misc_feature    complement(join(255858..255923,255936..256001,
FT                   256884..256949,256965..257030,257442..257492,
FT                   257508..257573,257625..257681,257727..257792))
FT                   /note="8 probable transmembrane helices predicted for
FT                   BP2860 by TMHMM2.0 at aa 151-173, 188-207, 224-246,
FT                   251-268, 405-427, 432-454, 748-770 and 774-796"
FT   misc_feature    complement(256110..256790)
FT                   /note="HMMPfam hit to PF00702, haloacid dehalogenase-like
FT                   hydrolase"
FT   misc_feature    complement(256752..256772)
FT                   /note="ScanRegExp hit to PS00154, E1-E2 ATPases
FT                   phosphorylation site."
FT   misc_feature    complement(256800..257468)
FT                   /note="HMMPfam hit to PF00122, E1-E2 ATPase"
FT   misc_feature    complement(257871..258065)
FT                   /note="HMMPfam hit to PF00403, Heavy-metal-associated
FT                   domain"
FT   misc_feature    complement(257964..258053)
FT                   /note="ScanRegExp hit to PS01047, Heavy-metal-associated
FT                   domain. Confirmed by InterPro eMOTIF pattern match."
FT   misc_feature    complement(258072..258245)
FT                   /note="HMMPfam hit to PF00403, Heavy-metal-associated
FT                   domain"
FT   CDS             complement(258290..259240)
FT                   /transl_table=11
FT                   /locus_tag="BP2861"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTA0"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTA0"
FT                   /protein_id="CAE43133.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT"
FT   repeat_region   258290..258321
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   complement(258290..259342)
FT   misc_feature    complement(258326..258859)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   misc_feature    complement(258917..258982)
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   repeat_region   complement(259311..259342)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(259457..259825)
FT                   /transl_table=11
FT                   /locus_tag="BP2862"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to several proteins of undefined function
FT                   e.g. Rhizobium loti Mll7047 protein TR:Q987H8
FT                   (EMBL:AP003010) (126 aa) fasta scores: E(): 1.1e-09, 37.06%
FT                   id in 116 aa"
FT                   /db_xref="InterPro:IPR014710"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV43"
FT                   /protein_id="CAE43134.1"
FT                   /translation="MPQHDKSRLVRIDTGPMINPVAGKPSRPIAGDASFRTVTAFEGGQ
FT                   GKVESGVWESTSGSFQSNTTGYIEYCHIIEGEARLVDPDGTVHAVKAGDAFIMPEGYTG
FT                   RWEVDRHVKKIYFVTHLA"
FT   CDS             260147..261037
FT                   /transl_table=11
FT                   /locus_tag="BP2863"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to several proteins of undefined function
FT                   e.g. Rhizobium loti Mlr0372 protein TR:Q98MZ7
FT                   (EMBL:AP002994) (296 aa) fasta scores: E(): 8.7e-07, 26.91%
FT                   id in 301 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV42"
FT                   /protein_id="CAE43135.1"
FT                   /translation="MPNLNLSLDHTGLIVFKLEDARQAFERLGFTLTPRSMHAGALTPG
FT                   GPVVPWGSGNHCAMFRNGYFELLGLVEPDKPSTARRMLDRYEGLHIVAMDCESADAMHP
FT                   QLTAAGVPAPAPATLERDAAFGPANDQTRRARFRNINLDGEAYPEARFIVIEHGTRDVL
FT                   WQPHLLDHPNGATGLAAMYFAAADLSATLERFQRLLGTPSAHGDAYCFELRRGRFWVMS
FT                   EAAMREHCPVLADGPVHRVAAACIEVRSLPALQEYLQARQIDYVAAPYLDGAAPSIWVA
FT                   PAQASCAALQFIQAR"
FT   CDS             261081..262091
FT                   /transl_table=11
FT                   /locus_tag="BP2864"
FT                   /product="putative alcohol dehydrogenase"
FT                   /note="Similar to many putative alcohol dehydrogenases e.g.
FT                   Halobacterium sp alcohol dehydrogenase Adh4 or Vng1821G
FT                   TR:Q9HP38 (EMBL:AE005083) (347 aa) fasta scores: E():
FT                   1.7e-29, 42.33% id in 352 aa"
FT                   /db_xref="GOA:Q7VV41"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV41"
FT                   /protein_id="CAE43136.1"
FT                   /translation="MRAAVIYEHGGPGSIKYETAFPDPVAKPDEVILKVGAATLNYHDV
FT                   FTRNGMPGITVPMPIIMGLDFAGEVVEVGADVKDWKVGDRVLVDPSDRKTFGGVIGEAR
FT                   HGGLAEYCAVPDHHLVRLPDDVSFETAVCLPVAYGTAWRMMQTIGKIQSGERVLILGAS
FT                   GGVGTCCVQLAKMAGAEVVAAASSPEKLARLTELGADHVIDYKQEDFMKAIFAKFGKPH
FT                   RRLYENGVDVVVNFTGGDTWVKSLRTLHRNGRVLTCGATAGYDPKEDLRFIWSYELQIL
FT                   GSNGWTRDELIALLEQVRAGKLQPIVDRTYGLADINDAFRQLEDRQVFGKILVKP"
FT   misc_feature    261123..262088
FT                   /note="HMMPfam hit to PF00107, Zinc-binding dehydrogenases"
FT   misc_feature    261540..261605
FT                   /note="ScanRegExp hit to PS01162, Quinone oxidoreductase /
FT                   zeta-crystallin signature. Confirmed by InterPro eMOTIF
FT                   pattern match."
FT   CDS             262088..262522
FT                   /transl_table=11
FT                   /locus_tag="BP2865"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to several proteins of undefined function
FT                   e.g. Sphingomonas aromaticivorans hypothetical 14.5 kDa
FT                   protein TR:O85848 (EMBL:AF079317) (137 aa) fasta scores:
FT                   E(): 5.1e-06, 31.91% id in 141 aa"
FT                   /db_xref="InterPro:IPR006683"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV40"
FT                   /protein_id="CAE43137.1"
FT                   /translation="MSQQAARKLEKADIEAIFARSRFISAMNLEILDIDHAGSRFSVRM
FT                   PLQDTYERGVPGTKQFHGGALAALIDVVGDFAIGMLVGGGVPTMNLRIDYLRPAVGDYV
FT                   DGVAVVRKAGKSAAVVDIDILCPAGKLVAIGRGTYVPITG"
FT   misc_feature    262151..262513
FT                   /note="HMMPfam hit to PF02584, Uncharacterized protein
FT                   PaaI, COG2050"
FT   CDS             join(262559..262735,262737..263636)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2866"
FT                   /product="putative exported protein (pseudogene)"
FT                   /note="Pseudogene. This CDS appears to have a frameshift
FT                   mutation following codon 59. The frameshift occurs within a
FT                   polymeric tract of (G)4. The sequence has been checked and
FT                   believed to be correct. Weakly similar to Agrobacterium
FT                   tumefaciens Agr_l_3061p agr_l_3061 TR:AAK90103
FT                   (EMBL:AE008354) (316 aa) fasta scores: E(): 1.4e-10, 29.55%
FT                   id in 291 aa. Also similar to BP0782, 46.197% identity
FT                   (47.536% ungapped) in 355 aa overlap."
FT                   /db_xref="PSEUDO:CAE43138.1"
FT   misc_feature    262559..262639
FT                   /note="Signal peptide predicted for BP2866 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.994) with cleavage site
FT                   probability 0.990 between residues 27 and 28"
FT   variation       262735..262738
FT                   /note="(G)4 in pertussis, (G)3 in parapertussis and
FT                   bronchiseptica"
FT   CDS             263648..264436
FT                   /transl_table=11
FT                   /locus_tag="BP2867"
FT                   /product="putative ABC transport proteins, ATP-binding
FT                   component"
FT                   /note="Similar to many membrane transport proteins e.g.
FT                   Escherichia coli taurine transport ATP-binding protein TauB
FT                   or SsiB or B0366 SW:TAUB_ECOLI (Q47538) (255 aa) fasta
FT                   scores: E(): 2.9e-29, 45.37% id in 216 aa"
FT                   /db_xref="GOA:Q7VV39"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV39"
FT                   /protein_id="CAE43139.1"
FT                   /translation="MNQAQHNGNAPVFRVQGLEVTYRSSRGPTTALEGFSTTVAEGEFL
FT                   SILGPSGCGKSTLLKVAAGLLKPSAGVAELRGQAIDGPRRDVGIVFQHATLLPWQNVLD
FT                   NVLLPIRTMGMDIAAGTARAHALLKTMGLEKFEQHYPHELSGGMQQRVGIARGLIHDPS
FT                   LLLMDEPFAALDAMTRETMMVELQRIWSETRKSVMFITHSIPEAVFLSSKVVVLGPRPA
FT                   RVLREIDIDLPFPRTEETLASPKFAQLCAELRSLFSNVAH"
FT   misc_feature    263771..264301
FT                   /note="HMMPfam hit to PF00005, ABC transporter"
FT   misc_feature    263792..263815
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   misc_feature    264077..264121
FT                   /note="ScanRegExp hit to PS00211, ABC transporters family
FT                   signature. Confirmed by InterPro eMOTIF pattern match."
FT   CDS             264446..265228
FT                   /transl_table=11
FT                   /locus_tag="BP2868"
FT                   /product="putative ABC transport proteins, inner membrane
FT                   component"
FT                   /note="Similar to many membrane transport proteins e.g.
FT                   Rhizobium loti ABC transporter, permease protein mlr6798
FT                   TR:Q988C6 (EMBL:AP003010) (275 aa) fasta scores: E():
FT                   5.8e-26, 34.28% id in 245 aa, and to Escherichia coli
FT                   putative aliphatic sulfonates transport permease protein
FT                   ssuc ssuc or b0934 SW:SSUC_ECOLI (P75851) (263 aa) fasta
FT                   scores: E(): 4.6e-19, 28.92% id in 242 aa"
FT                   /db_xref="GOA:Q7VV38"
FT                   /db_xref="InterPro:IPR000515"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV38"
FT                   /protein_id="CAE43140.1"
FT                   /translation="MKERTKSIVYPLLLLAALLVLWFIANRYLGVPYYVLPPVEGVLAA
FT                   LYRGYVQGDFWGDFGFTLASMAIGYVGGCTAAFIIGVLFAEYRWLERLLYPFVLALQSM
FT                   PKVALAPLILVWFGFGLESKAIMVALVCFFPMFINTAVGLEATDPALLDLMRAFSASRW
FT                   HILTRIKIPSAASHIFAALQISVVLGLIGAVVAEFVSSSKGLGYLINAATTTLDTSTMF
FT                   AALISLAVLGIAGSQLIRVLHRKLVFWDRGEAGRTLTE"
FT   misc_feature    264446..264526
FT                   /note="Signal peptide predicted for BP2868 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.965) with cleavage site
FT                   probability 0.528 between residues 27 and 28"
FT   misc_feature    join(264464..264532,264632..264700,264737..264805,
FT                   264818..264886,264977..265045,265103..265171)
FT                   /note="6 probable transmembrane helices predicted for
FT                   BP2868 by TMHMM2.0 at aa 7-29, 63-85, 98-120, 125-147,
FT                   178-200 and 220-242"
FT   CDS             complement(265232..266323)
FT                   /transl_table=11
FT                   /locus_tag="BP2869"
FT                   /product="conserved hypothetical protein"
FT                   /note="The very N-terminus of the predicted product of this
FT                   CDS is similar to Rhizobium loti Msr6094 protein TR:Q98A99
FT                   (EMBL:AP003008) (79 aa) fasta scores: E(): 9.3e-05, 44.59%
FT                   id in 74 aa. Otherwise there are no significant database
FT                   hits. Similar to BP0779, 43.785% identity (43.909%
FT                   ungapped) in 354 aa overlap."
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV37"
FT                   /protein_id="CAE43141.1"
FT                   /translation="MHASDPFSETYAQARAKFLEAARAAGADIHSYCHDTQRGPDGEAL
FT                   YLDVARLGGAQASRMVVVGCGTHGIEGYSGSAAQTDWLRRLDPSRLPRDTGVLLLHAHN
FT                   PWGFAHALRFTEENVDLNRNFVDFSQPLPQNPRYAEVHALIARDHWDEQDVEAIFRKLS
FT                   DFRESVGEQVYSDAFNGGQYSHPTGIFYGGMRQQWSNRALREAIATHLAGVRQAAFIDL
FT                   HTGIGPERGHVFLCFHEAGSPAYERARRWWGERAVNRDGVTHKAVARYQGLLVDAFVAM
FT                   LPEAETTAVVVEFGTLPRPRMQRASMAARWLWEHQDADGALRAMLMRDIREAFYPSAPD
FT                   WRAGVLVQSREIFDRALAGLGQD"
FT   CDS             266429..267904
FT                   /transl_table=11
FT                   /locus_tag="BP2870"
FT                   /product="putative acid CoA ligase"
FT                   /note="Similar to many putative acid CoA ligases e.g.
FT                   Rhizobium loti Mlr1843 TR:Q98JP7 (EMBL:AP002998) (495 aa)
FT                   fasta scores: E(): 4.9e-39, 33.12% id in 486 aa"
FT                   /db_xref="GOA:Q7VV36"
FT                   /db_xref="InterPro:IPR000873"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV36"
FT                   /protein_id="CAE43142.1"
FT                   /translation="MSLNLGQLTDPNKNPAAIALIDCLDHEAPRIYTHGDLDRLANACA
FT                   RGLLRKGLKTGDAVALMGINRAEFLIAYLGIMRAGMVAVPVNYKLAPDTLSFLLQDCQA
FT                   RLAFVDKPRAALAPAGLDTVRFDTAQWDEFLDPGPFETYAPPLRTTAMILYTSGSTGRL
FT                   KGVQLSHDGQLWTIRSRFLNRKDFDDERFIVAAPMFHMNALANCKFALAAHASIVLLPQ
FT                   FDTHRFIEALGRHEVTWITSVPTMMALVVKEKQALAQIDTARVRYIRMGSAPATDQLYE
FT                   AVRRAFPNAAIAGGYGTTEAGPIVFGPTQGRALPGGGGLGWVLPDVEVRLVDAQGRDAD
FT                   EGELWMRTPANMLGYLNLPDKTRQVLTEDGWYISGDVFRRDSDGCYYFIGRADDMFNCG
FT                   GENIYPGEIEQVIERLPAVMQACVVPVADEIKGHKPVAFVVLQRGMSLSEQDVKSYVLA
FT                   NAPAYQHPRRVFFVESLPLAATSKVDRRAQAEA"
FT   misc_feature    266525..267697
FT                   /note="HMMPfam hit to PF00501, AMP-binding enzyme"
FT   misc_feature    266885..266920
FT                   /note="ScanRegExp hit to PS00455, Putative AMP-binding
FT                   domain signature."
FT   CDS             268046..268594
FT                   /transl_table=11
FT                   /locus_tag="BP2871"
FT                   /product="hypothetical protein"
FT                   /note="no significant database hits. Similar to BP3011,
FT                   45.562% identity (47.531% ungapped) in 169 aa overlap."
FT                   /db_xref="GOA:Q7VV35"
FT                   /db_xref="InterPro:IPR010300"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV35"
FT                   /protein_id="CAE43143.1"
FT                   /translation="MRFNATSVAGAAQPQRLHGLAADIDRAVAAASTAQTPAAVAGVLA
FT                   AYREPDELLTPAQQAGNAEHYARHLLYAHPLGRFSIVALAWQPGQCTPVHGHFTWCAYA
FT                   VLRGAMQEEQYDWDAAGQCALATRVVARAPGDCVASLAGLDAIHRLRNVGAGTAISLHV
FT                   YGVEGDRVATHVNRIARAA"
FT   CDS             complement(268610..269071)
FT                   /transl_table=11
FT                   /locus_tag="BP2872"
FT                   /product="putative AsnC-family transcriptional regulator"
FT                   /note="Similar to many proposed transcriptional regulators
FT                   e.g. Rhizobium meliloti putative transcription regulator
FT                   protein Smc00131 TR:CAC46458 (EMBL:AL591788) (162 aa) fasta
FT                   scores: E(): 7.2e-38, 63.57% id in 151 aa"
FT                   /db_xref="GOA:Q7VV34"
FT                   /db_xref="InterPro:IPR019888"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VV34"
FT                   /protein_id="CAE43144.1"
FT                   /translation="MDATDRKIIAILQENAETPIQSIADQVSLSTTPCWRRVQKLKESG
FT                   VIRRQVALCDPVALNVGVTVFISVKTNQHSQAWLDRFADHVTDIPEVVEFYRMSGDIDY
FT                   LIRVVVPDISTYDTVYKKLIRIADLHDVSSSFAMEQLKYTTALPVDYAS"
FT   misc_feature    complement(268691..268999)
FT                   /note="HMMPfam hit to PF01037, AsnC family"
FT   misc_feature    complement(268955..269020)
FT                   /note="Predicted helix-turn-helix motif with score 1002
FT                   (+2.60 SD) at aa 18-39, sequence TPIQSIADQVSLSTTPCWRRVQ"
FT   CDS             complement(269172..27