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EBI DbfetchID BX640418; SV 1; linear; genomic DNA; STD; PRO; 349346 BP. XX AC BX640418; XX DT 09-AUG-2003 (Rel. 76, Created) DT 23-OCT-2008 (Rel. 97, Last updated, Version 7) XX DE Bordetella pertussis strain Tohama I, complete genome; segment 8/12 XX KW complete genome. XX OS Bordetella pertussis OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Bordetella. XX RN [2] RP 1-349346 RA Sebaihia M.; RT ; RL Submitted (06-AUG-2003) to the EMBL/GenBank/DDBJ databases. RL Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute, RL Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail: RL ms5@sanger.ac.uk XX RN [3] RA Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E., RA Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., RA Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A., RA Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I., RA Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., RA Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., RA Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., RA Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., RA Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., RA Barrell B.G., Maskell D.J.; RT "Comparative analysis of the genome sequences of Bordetella pertussis, RT Bordetella parapertussis and Bordetella bronchiseptica"; RL Nat. Genet. 35(1):0-0(2003). XX DR EMBL-CON; BX470248. DR RFAM; RF01118; PK-G12rRNA. DR SILVA-LSU; BX640418. DR SILVA-SSU; BX640418. XX FH Key Location/Qualifiers FH FT source 1..349346 FT /organism="Bordetella pertussis" FT /strain="Tohama I" FT /mol_type="genomic DNA" FT /db_xref="taxon:520" FT CDS complement(60..1658) FT /transl_table=11 FT /locus_tag="BP2307" FT /product="conserved ATP-binding protein" FT /note="Similar to Escherichia coli hypothetical protein FT yjgr yjgr or b4263 SW:YJGR_ECOLI (P39342) (500 aa) fasta FT scores: E(): 9.7e-112, 63.24% id in 506 aa" FT /db_xref="GOA:Q7VWF0" FT /db_xref="InterPro:IPR008571" FT /db_xref="UniProtKB/TrEMBL:Q7VWF0" FT /protein_id="CAE42580.1" FT /translation="MHATAHKRRPRLYTWASDFAPFRRAVMPDPIVIAKNAQTELALLP FT ALANRHGCITGATGTGKTVTLQVLAEAFSRIGTPVFMADVKGDLTGISQAGTASPKLQE FT RLKNLGLPEPAWGASPVSLWDVFGEQGVPIRATVSDMGPLLLSRMLELNDTQEGVLTLV FT FRVADDEGQLLLDLKDLRAMLQNVADRSAELKTRYGNVSAATVGAIQRGLLRLESQGAE FT QFFGEPMLDVHDLLRTDAQGRGMVNILAADKLMQAPRLYGVFLLWLLADLYEKLPEIGD FT PEQPGLVFFFDEAHLLFNDAPSALLDKIEQVVRLVRSKGVGVYFVTQNPLDIPDTVLGQ FT LGNRIQHALRAFTPRDQKAVKTAAQTMRPNPGLDIEAAITELGVGEALVSLLDAKGRPT FT PTERAWILPPGSRIGPATDAERQALRQAMPLAPKYEQTVDRESAYEVLTARAAADAPAT FT DGARAPAGKNGAPAAPAEEGGLMQGINEVLFGSTGSRGGKRDGVVQSVAKSTARQMARE FT LVRGVLGSLLGSRRR" FT misc_feature complement(1470..1493) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 1735..2466 FT /transl_table=11 FT /locus_tag="BP2308" FT /product="conserved hypothetical protein" FT /note="Similar to many eg. Neisseria meningitidis FT hypothetical protein Nmb1648 TR:Q9JYC7 (EMBL:AE002515) (242 FT aa) fasta scores: E(): 6.6e-60, 67.22% id in 241 aa" FT /db_xref="InterPro:IPR017856" FT /db_xref="UniProtKB/Swiss-Prot:Q7VWE9" FT /protein_id="CAE42581.1" FT /translation="MAGHSKWANIQHRKGRQDAKRGKLWTKIIREITVAARAGGADPDS FT NPRLRMAWDKATDANMPKDNIQRAIQRGAGGADGESYEEVRYEGYGIGGAAVIVDCMTD FT NRTRTVAEVRHAFAKHGGNLGQEGSVAFMFKHCGQFVFAPGTSEETVMEAALEAGAEDV FT ATDEEGVIEVVCAPADFTAVRQAFEAAGLKAEVDGVVMKALNETELTGEDAVKMQKLLD FT VLESLDDVQEVYTNVVFDEAQ" FT misc_feature 1747..2448 FT /note="HMMPfam hit to PF01709, Domain of unknown function FT DUF28" FT CDS 2534..3874 FT /transl_table=11 FT /gene="purD" FT /locus_tag="BP2309" FT /product="phosphoribosylamine--glycine ligase" FT /EC_number="6.3.4.13" FT /note="Similar to Escherichia coli FT phosphoribosylamine--glycine ligase PurD or b4005 FT SW:PUR2_ECOLI (P15640) (429 aa) fasta scores: E(): 7e-93, FT 60.41% id in 432 aa" FT /db_xref="GOA:Q7VWE8" FT /db_xref="HSSP:1GSO" FT /db_xref="InterPro:IPR013817" FT /db_xref="UniProtKB/TrEMBL:Q7VWE8" FT /protein_id="CAE42582.1" FT /translation="MSGNLQKPRNMKLLVIGSGGREHALAWRLARSPRVHKVYVAPGNG FT GTAQGEQLENVPLTSAEELADFVQREGVSLTVVGPEAPLAAGVVDVFRARGLKIFGPTK FT AAAQLESSKDYAKAFMVRHAIPTARYETFTDPAQAHAYVDQHGAPIVIKADGLAAGKGV FT VVAMTLDEAHGAIDAMLGDGSLGEAGARVVIEEFLTGEEASFIVMCDGRHVLALATSQD FT HKRLKDGDAGPNTGGMGAYSPAPVVTPELHHRIMREIILPTVQGMARDGIPYTGFLYAG FT LMIAAGDDPDRPIKTLEYNCRMGDPETQPIMMRVKSDLLDAFEHAVDGTLDQADIVWDR FT RTALGVVLAAHNYPATPRTGDVIAGLPAATEDCVVFHAATALDGDATKTTGGRVLCVTA FT LGDSVRIARDRAYEAVDAIHFDGRQYRTDIGWRALKPSQQKAPKPTA" FT misc_feature 2564..3835 FT /note="HMMPfam hit to PF01071, Phosphoribosylglycinamide FT synthetase, ATP-grasp (A) domain" FT CDS 3890..4801 FT /transl_table=11 FT /gene="hemF" FT /locus_tag="BP2310" FT /product="coproporphyrinogen III oxidase" FT /EC_number="1.3.3.3" FT /note="Similar to Escherichia coli coproporphyrinogen III FT oxidase (aerobic) HemF or b2436 SW:HEM6_ECOLI (P36553) (299 FT aa) fasta scores: E(): 1.2e-81, 64.06% id in 295 aa" FT /db_xref="GOA:Q7VWE7" FT /db_xref="InterPro:IPR018375" FT /db_xref="UniProtKB/Swiss-Prot:Q7VWE7" FT /protein_id="CAE42583.1" FT /translation="MTAVAIPAVRDYLTDLQGRIVAALEQAGGEAFRTDAWQRAEGGGG FT VSRLLEGGQLFERAGVLFSHVKGTRLPPSASAHRPELAGRGWEAMGVSMVLHPRNPYVP FT TTHMNVRMFVAAARPGHAESDVFWFGGGLDLTPYYPFEDDARHFHRACRDALDPHGADY FT YPRYKQWCDEYFFLKHRNETRGIGGIFFDDLNEPGFDASFALTCSVGDSFLPAYLPIVQ FT ARRDMPYGERERDFQAYRRGRYVEFNLVFDRGTLFGLQSGGRTESILLSMPPLAQWRYD FT WQPQAGTPEAALAEFLRPREWV" FT misc_feature 3893..4798 FT /note="HMMPfam hit to PF01218, Coproporphyrinogen III FT oxidase" FT misc_feature 4391..4465 FT /note="ScanRegExp hit to PS01021, Coproporphyrinogen III FT oxidase signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 4792..5385 FT /transl_table=11 FT /gene="nadD" FT /locus_tag="BP2311" FT /product="putative nicotinate-nucleotide FT adenylyltransferase" FT /EC_number="2.7.7.18" FT /note="Similar to Neisseria meningitidis probable FT nicotinate-nucleotide adenylyltransferase NadD or nmb2024 FT SW:NADD_NEIMB (P57090) (201 aa) fasta scores: E(): 6.3e-22, FT 39.69% id in 199 aa, and to Escherichia coli FT nicotinate-nucleotide adenylyltransferase NadD or b0639 FT SW:NADD_ECOLI (P52085) (213 aa) fasta scores: E(): 4.9e-12, FT 35.4% id in 209 aa" FT /db_xref="GOA:Q7VWE6" FT /db_xref="HSSP:1KAM" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/Swiss-Prot:Q7VWE6" FT /protein_id="CAE42584.1" FT /translation="MGVTRIGLLGGSFDPVHVAHIALADTARQFLGLDQVQLIPAANPW FT QRQPLKASAPHRLRMLELAIAGHPALAINPVEIERGGATYTADTVRALPGGPQYFWLLG FT TDQLQNFCTWRDWQDIAARIELAVATRPGASIAPPAELAAWLAAHRRQLHELPFAPMAV FT SASDIRQRLAAGAATDGLLPEPVAAYIATHHLYR" FT CDS 5447..5833 FT /transl_table=11 FT /locus_tag="BP2312" FT /product="conserved hypothetical protein" FT /note="Similar to many eg. Neisseria meningitidis FT (serogroup A), and hypothetical protein Nma0417 TR:Q9JQR0 FT (EMBL:AL162753) (128 aa) fasta scores: E(): 6.8e-16, 48.14% FT id in 108 aa" FT /db_xref="InterPro:IPR004394" FT /db_xref="UniProtKB/TrEMBL:Q7VWE5" FT /protein_id="CAE42585.1" FT /translation="MDIQKLQRAIIDALEDVKAQDIKVFNTSELTSLFDRVIIASATSN FT RQTRALASSVADRGRALKLTGITVEGEDTGEWVVVDLGYIVVHVMQPAIRQYYNLEEIW FT GGKPVRVKLLPESTRPAMPGAGAL" FT misc_feature 5456..5761 FT /note="HMMPfam hit to PF02410, Domain of unknown function FT DUF143" FT CDS 5845..6315 FT /transl_table=11 FT /locus_tag="BP2313" FT /product="conserved hypothetical protein" FT /note="Similar to many eg. Neisseria meningitidis FT (serogroup A), and hypothetical protein nma0418 nma0418 or FT nmb2022 TR:Q9JR59 (EMBL:AL162753) (156 aa) fasta scores: FT E(): 2.9e-28, 53.54% id in 155 aa" FT /db_xref="GOA:Q7VWE4" FT /db_xref="HSSP:1VH0" FT /db_xref="InterPro:IPR003742" FT /db_xref="UniProtKB/Swiss-Prot:Q7VWE4" FT /protein_id="CAE42586.1" FT /translation="MKLIVAAVGTRMPGWVETAWDDYAKRLPADCALELREIKPEPRTS FT GKTPAQMMAAEARRIETALPPGVLRIALDERGRDLTTVALSQQLEKWRAGGRDVAFLVG FT GPDGLDAALKASCEGLLRLSSLTLPHPMVRVLLAEQLYRAWAIMTNHPYHRA" FT misc_feature 5845..6306 FT /note="HMMPfam hit to PF02590, Uncharacterized ACR, FT COG1576" FT CDS 6327..6950 FT /transl_table=11 FT /locus_tag="BP2314" FT /product="Maf-like protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4478 TR:Q9HVU3 (EMBL:AE004861) (201 aa) fasta FT scores: E(): 9e-30, 55.67% id in 194 aa, and to Bacillus FT subtilis hypothetical protein Maf SW:MAF_BACSU (Q02169) FT (189 aa) fasta scores: E(): 3.5e-12, 40.31% id in 191 aa" FT /db_xref="GOA:Q7VWE3" FT /db_xref="InterPro:IPR003697" FT /db_xref="UniProtKB/Swiss-Prot:Q7VWE3" FT /protein_id="CAE42587.1" FT /translation="MSDATLAADPPRLYLASASPRRRELLLQIGLTHTVLRVPAPPGED FT EPQHPGEAACDYVRRTARDKAERGQAWLHSQQLPDLPLLAADTTVILDGIVLGKPADRA FT DALRMLAALSGREHEVHAAVALCHQGRLYEDVSITRVRMRALEQAELQRYCDSGEPYGK FT AGAYGIQGLAGAFVSHIAGSYTGVMGLPIYETAALLRSAGIAVP" FT misc_feature 6357..6941 FT /note="HMMPfam hit to PF02545, Maf-like protein" FT CDS complement(6971..9718) FT /transl_table=11 FT /gene="vag8" FT /locus_tag="BP2315" FT /product="autotransporter" FT /note="Previously sequenced as Bordetella pertussis Vag8 FT protein Vag8-2 SWALL:Q8VV95 (EMBL:AJ420993) (915 aa) fasta FT scores: E(): 0, 100% id in 915 aa" FT /db_xref="GOA:Q8VV95" FT /db_xref="InterPro:IPR012332" FT /db_xref="UniProtKB/TrEMBL:Q8VV95" FT /protein_id="CAE42588.1" FT /translation="MAGQARGWYGAGGRHPIHFQISAGAALMLGLLDVAGAAAVTAAQR FT IDGGAAFLGDVAIATTKASEHGINVTGRTAEVRVTGGTIRTSGNQAQGLRVGTENAPDN FT TALGASVFLQNLIIETSGTGALGVSVHEPQGGGGTRLSMSGTTVRTRGDDSFALQLSGP FT ASATLNDVALETAGQQAPAVVLWQGAQLNAQGLVVQVNGAGVSAIHAQDAGSFTLSGSD FT ITARGLEVAGIYVQEGMQGTLTGTRVTTQGDTAPALQVEDAGTHVSMNGGALSTSGANS FT PAAWLLAGGSAQFRDTVLRTVGEASHGVDVAAHSEVELAHAQVRADGQGAHGLVVTRSS FT AMVRAGSLVESTGDGAAALLESGHLTVDGSVVHGHGAAGLEVDGESNVSLLNGARLSSD FT QPTAIRLIDPRSVLNLDIKDRAQLLGDIAPEAQQPDGSPEQARVRVALADGGTWAGRTD FT GAVHTVRLLDRGVWTVTGDSRVAEVKLEGGTLAFAPPAQPKGAFKTLVATQGISGTGTI FT VMNAHLPSGTADVLVAPQGFGDRQVLVVNNTDDGTESGATKVPLIEDEQGHTAFTLGNM FT GGRVDAGARQYELTASEAQADKARTWQLTPTNELSTTATAAVNAMAIAASQRIWQAEMD FT VLLRHMSGLHSIGSPGGFWARGLSQRQRLDTGYGPWQKQTVSGIELGLDRRVAGGATTA FT WSVGMLAGYSETRRDGGAYRAGHVHSAHVGAYVSYLNDSGSYVDGVVKYNRFRHGFDIR FT TTDLKRVDAKHRSHGLGALLRGGRRIDIDGGWYVEPQASVAWFHAGGSRYEASNGLRVR FT ADGAHSWVLRAGAEAGRQMRLANGNIVEPYARLGWAQELGADNAVYTNGIRHVTRSRGG FT FAEARVGVGALLGKRHALYADYEYAKGARFEAPWTLQLGYRYSW" FT misc_feature complement(9590..9655) FT /note="1 probable transmembrane helix predicted for BP2315 FT by TMHMM2.0 at aa 21-43" FT rRNA complement(10108..10222) FT /note="5S rRNA" FT rRNA complement(10397..13278) FT /note="23SrRNA" FT tRNA complement(13593..13668) FT /note="tRNA Ala anticodon TGC, Cove score 88.49" FT tRNA complement(13689..13765) FT /note="tRNA Ile anticodon GAT, Cove score 93.29" FT rRNA complement(13863..15394) FT /note="16S rRNA" FT repeat_region 16095..16126 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 16095..17147 FT CDS 16197..17147 FT /transl_table=11 FT /locus_tag="BP2316" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTC0" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTC0" FT /protein_id="CAE42589.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN" FT misc_feature 16455..16520 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 16578..17111 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(17116..17147) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 17191..18654 FT /transl_table=11 FT /locus_tag="BP2317" FT /product="putative ribonuclease" FT /note="Similar to a family of proteins involved in FT processing of the 5'end of 16S rRNA and implicated in the FT formation of cytoplasmic axial filaments during chromosome FT segregation and cell division, eg. Neisseria meningitidis FT cytoplasmic axial filament protein nmb1791 TR:Q9JY14 FT (EMBL:AE002529) (509 aa) fasta scores: E(): 5.2e-111, FT 60.41% id in 485 aa, and to Escherichia coli, and FT ribonuclease G CafA or Rng or b3247 or z4605 or ecs4119 FT SW:RNG_ECOLI (P25537) (488 aa) fasta scores: E(): 6.6e-98, FT 52.24% id in 490 aa" FT /db_xref="GOA:Q7VWE2" FT /db_xref="InterPro:IPR019307" FT /db_xref="UniProtKB/TrEMBL:Q7VWE2" FT /protein_id="CAE42590.1" FT /translation="MTEDILINVTPFETRVALVEQGAVQELHVERSVQRGHVGNIYLGR FT VVRVLPGMQSAFIDIGLERAAFIHIADLRENRSERSQGQTPTPIEKLLFEGQTLMVQVI FT KDPLGTKGARLSTQISIAGRMLVYLPHDPHIGISQKIDSESERTQLRERLQALMPPEEK FT GGFIVRTQAEGATDEEIAADLEYLRKLWASVQAAARSQPAPTALHQDLTLGQRVLRDMV FT GPHTGTILVDSRSTSSALQEWARVYTPSVAERIRHYSGERPLFDTANVDEEIARALSRR FT VDLKSGGYLIVDQTEALTTVDVNTGGFVGGRNFDDTIFKTNLEAAQAIARQLRLRNLGG FT IVILDFIDMEDPDHRETVLAELKKALSRDRTRMTVNGFTQLGLIEMTRKRTRDSLAHQL FT CEPCPMCQSRGNVRTARTVCYEILREILREARQFNPREFRILAAQGVVDLFLEEESQHL FT AMLGDFVGKQISLEVESQYSQEQYDIILI" FT misc_feature 17293..17544 FT /note="HMMPfam hit to PF00575, S1 RNA binding domain" FT CDS complement(18688..19590) FT /transl_table=11 FT /locus_tag="BP2318" FT /product="putative dehydratase" FT /note="Similar to Amycolatopsis methanolica prephenate FT dehydratase PheA or Pdt SW:PHEA_AMYME (Q44104) (304 aa) FT fasta scores: E(): 3.1e-19, 35.76% id in 274 aa, and to FT Neisseria gonorrhoeae P-protein PheA SW:PHEA_NEIGO (Q9ZHY3) FT (362 aa) fasta scores: E(): 3.8e-17, 30.07% id in 266 aa" FT /db_xref="GOA:Q7VWE1" FT /db_xref="InterPro:IPR001086" FT /db_xref="UniProtKB/TrEMBL:Q7VWE1" FT /protein_id="CAE42591.1" FT /translation="MNRRPAGAARGSDAIGIARAVAGPAALTATQSPAMAARTAYLGPA FT GSWTHQACLDLYGADGLVPLSREALFAAYADGKVERACVPVATSVVGLTPYMEDVLALP FT RVVVVAEYPKMLGYSLLARPGTRREDIKEVHAHPVAFEEVRPWLEREMPGARRVPAASG FT GAAAQAVAASATQDKASFGPRVGASVYQLVSLADGIEEGPHNVTRWWVLGRDMPAPTGK FT DKTSLLACIPDARLAPLLADFAQAGVPILTIYERPARKTLDAHRYVVEVAGHVRDDALA FT GLLARQSELRVLGSYPRRY" FT misc_feature complement(18940..19476) FT /note="HMMPfam hit to PF00800, Prephenate dehydratase" FT CDS complement(19587..20132) FT /transl_table=11 FT /locus_tag="BP2319" FT /product="putative transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator pa1283 TR:Q9I461 (EMBL:AE004558) FT (186 aa) fasta scores: E(): 2.1e-41, 60.94% id in 169 aa" FT /db_xref="GOA:Q7VWE0" FT /db_xref="InterPro:IPR012287" FT /db_xref="UniProtKB/TrEMBL:Q7VWE0" FT /protein_id="CAE42592.1" FT /translation="MGRKRSIDRDKVLDAAETIVVRDGAKGLTIDAVAREMGVTKGGIQ FT YCYGSKDAMIEALFERWDKAYETLFQAVLGEDASPRGRVRAHAEATRRADATSNAKAAS FT LLAALIQAPELLGSTRSWYRSRLDGLDVDTEAGRRARLAVLATEGAFLLRFFGLMEMDE FT SEWQAIFRDIRAVLVDAP" FT misc_feature complement(19959..20099) FT /note="HMMPfam hit to PF00440, Bacterial regulatory FT proteins, tetR family" FT misc_feature complement(19986..20051) FT /note="Predicted helix-turn-helix motif with score 1123 FT (+3.01 SD) at aa 17-38, sequence LTIDAVAREMGVTKGGIQYCYG" FT CDS 20216..21715 FT /transl_table=11 FT /locus_tag="BP2320" FT /product="putative inner membrane efflux protein" FT /note="Similar to many major facilitator family proteins FT eg. Pseudomonas aeruginosa probable MFS transporter pa1282 FT TR:Q9I462 (EMBL:AE004557) (501 aa) fasta scores: E(): FT 1.2e-90, 58.07% id in 489 aa, and to Salmonella typhimurium FT methyl viologen resistance protein SmvA SW:SMVA_SALTY FT (P37594) (496 aa) fasta scores: E(): 2.2e-53, 38.91% id in FT 496 aa" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7VWD9" FT /protein_id="CAE42593.1" FT /translation="MRPQNRWLVLAIIASALFLITVDTTVLYAALPRLTHDLHASAAEK FT LWIINAYPLVVTGLLPAMGALSDRWGPRATFTSGLAAFGAASLCVAYAPSATLLIVARG FT LLAIGAALMMPATLAILRHVFTDARERALAIGVWAAIASGGAALGPVVGGVLLEYFWWG FT SVFLINVPVVLALLWPAWRLVPAGQPAAHRPWDLGAAVLIMTALLGLVFGLKELGKPAP FT GYGVAMLAVAVGAVAMTLFARRQRGQAEPMIDVGMFRDAGFSRGVAVALIAMLTLVGVE FT LVLSQRLQLVQGMTPLQAALLLLPVPLAAAAAGPLAGLWLGRAGERRVMGTALALAGVG FT AAGMVVGTEWPLAGQMAVLALLGAGLGGAMTAASTAVMLHAPADRASMAASIEEVAYEL FT GSVLGVTLFGSIMTTVYTRTLVLPADAPAAAQLRDSLDQALAAAETMAPQWAQQVLPMA FT YQAFDHAYAVVAATAAALLAGAALLTQARRRGPQSSRNCML" FT misc_feature 20216..20302 FT /note="Signal peptide predicted for BP2320 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.968 between residues 29 and 30" FT misc_feature join(20234..20302,20345..20413,20450..20518,20531..20590, FT 20609..20677,20690..20758,20795..20854,20882..20941, FT 21002..21070,21113..21181,21200..21253,21281..21349, FT 21410..21478,21605..21664) FT /note="14 probable transmembrane helices predicted for FT BP2320 by TMHMM2.0 at aa 7-29, 44-66, 79-101, 106-125, FT 132-154, 159-181, 194-213, 223-242, 263-285, 300-322, FT 329-346, 356-378, 399-421 and 464-483" FT CDS complement(21688..23559) FT /transl_table=11 FT /locus_tag="BP2321" FT /product="putative ABC transporter" FT /note="Similar to many ABC transporters eg. Neisseria FT meningitidis putative ABC transporter ATP-binding protein FT nma0535 TR:Q9JW59 (EMBL:AL162753) (621 aa) fasta scores: FT E(): 2.3e-75, 40.39% id in 604 aa, and to Escherichia coli, FT and probable transport ATP-binding protein MsbA or b0914 or FT z1260 or ecs0997 SW:MSBA_ECOLI (P27299) (582 aa) fasta FT scores: E(): 1.3e-71, 37.87% id in 573 aa. Includes both FT ATP-binding and integral membrane subunits." FT /db_xref="GOA:Q7VWD8" FT /db_xref="HSSP:1MV5" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/Swiss-Prot:Q7VWD8" FT /protein_id="CAE42594.1" FT /translation="MLAWRPGRPDGCQAAGGRRYNPGHDCIKASVSLNSAARNAPAGSQ FT PVKAELWKRVYSRVGSYWKGLVLAVLLMAGAAATQPTLAVIMKPLLDDGFSGAKPHYVW FT FLPLAVVGLILLRGICNFFSDYLLAWVANNVLRGIRGEMFERLLGLPDADFKRGDTGRL FT LNRFTIDAGNVTGYATDVITVLVRETLVVIALIGVLLYMSWALTLIILVMLPVSVGIAR FT AFTRRLRRINRETVNMNAELTRVVSEGIDGQRVIKLFDGYDAERRRFDFVNSRLRRFAM FT RSATADAALTPLTQVCISVAVGAVIAVALSQANSGALTVGSFASFMAALAQIFDPIKRL FT TNLAGKMQKMLVAAESVFTLVDQTPEADAGTRALPEPVRGKVEFRAVSHRFPDADRDTV FT SAVSFLVEPGQTVALVGRSGSGKTTLVNMLPRFVLPDGGDILFDDVPIQDLTLRSLRSH FT LSLVSQDVVLFDDTIAANVGYGAGGTVDDARVRDALAAANLLEFVDGLPLGIHTPVGQN FT AARLSGGQRQRLAIARALIKNAPVLILDEATSALDNESERQVQASLERLMRGRTTLVIA FT HRLSTVQNADRIIVLDAGKIVEHGPHSELLAANGLYASLYNMQFRED" FT misc_feature complement(21778..22335) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(21955..21999) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(22291..22314) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(22549..23364) FT /note="HMMPfam hit to PF00664, ABC transporter FT transmembrane region." FT misc_feature complement(join(22558..22608,22630..22695,22924..22989, FT 23188..23253,23299..23364)) FT /note="5 probable transmembrane helices predicted for FT BP2321 by TMHMM2.0 at aa 65-87, 102-124, 190-212, 288-310 FT and 317-334" FT CDS 23575..24540 FT /transl_table=11 FT /gene="waaF" FT /locus_tag="BP2322" FT /product="heptosyltransferase II" FT /note="Previously sequenced as Bordetella pertussis FT heptosyltransferase II WaaF TR:O07076 (EMBL:Y13475) (321 FT aa) fasta scores: E(): 2.3e-125, 100% id in 321 aa, and to FT Escherichia coli ADP-heptose--LPS heptosyltransferase II FT RfaF or WaaF or b3620 SW:RFAF_ECOLI (P37692) (348 aa) fasta FT scores: E(): 3.2e-08, 29.58% id in 311 aa" FT /db_xref="GOA:O07076" FT /db_xref="HSSP:1PSW" FT /db_xref="InterPro:IPR002201" FT /db_xref="UniProtKB/TrEMBL:O07076" FT /protein_id="CAE42595.1" FT /translation="MTTISCIYVRLPNWIGDVCMSLPSLRTLQDSGAPLVVCARPWARD FT LLAGVPKQDFLPMTGKVLRDRATVAAHRRALGGGAATRGLLLPDSLSSAAVFRLAGIPC FT AGYRDDGRSPLLRWPVDKPGASLHAVQSWHYLTRAALQRWGLPAGPVEPGALLDLPLTQ FT AHRDAAGQLLQAQQLAGRPFVLIAPTATGLHKGKVKVWPGFDALTRALQERGQTVVMCP FT PPAEVAEARRNAPSATLLPPLGLGAFAALAQRAALVVCNDSGVSHVAAAVDARQLTLFG FT VTRPGRTGPWSPRAVCLGSETRWPGPEQVMEKSLELLSGA" FT misc_feature 23779..24531 FT /note="HMMPfam hit to PF01075, Glycosyltransferase family 9 FT (heptosyltransferase)" FT CDS 24553..25317 FT /transl_table=11 FT /locus_tag="BP2323" FT /product="conserved hypothetical membrane protein" FT /note="Previously sequenced as Bordetella pertussis FT hypothetical 19.1 kDa protein TR:O07077 (EMBL:Y13475) (179 FT aa) fasta scores: E(): 2.6e-63, 100% id in 179 aa, and FT similar to many eg. Myxococcus xanthus hypothetical 28.3 FT kDa protein TR:AAK83000 (EMBL:AF285783) (258 aa) fasta FT scores: E(): 2e-14, 32.95% id in 264 aa" FT /db_xref="InterPro:IPR003848" FT /db_xref="UniProtKB/TrEMBL:Q7VWD7" FT /protein_id="CAE42596.1" FT /translation="MAISSFLTNLIIPLNLCLTLVVLGLVLGLFRLRKTGAALIAGGLL FT WALAWSLPATSLWLGGALESRYPHLPPDQSPTADAIVVLGGNTANGRANWFLPYDKETA FT VVRVDTATELFQAGRASKVVLSGGALEGDISEARGMAYRMRQHGVPESALILENASRTT FT YENAALTEDTLRQHGIQKVLLVTSALHMPRAMAAFSKQGVQAIAAPAPPQIVAPADGSL FT SPWLPDQRSFDASRSIIKEYAGLFVYWLRGWV" FT misc_feature 24568..25308 FT /note="HMMPfam hit to PF02698, Uncharacterized ACR, FT COG1434" FT misc_feature join(24580..24648,24667..24735) FT /note="2 probable transmembrane helices predicted for FT BP2323 by TMHMM2.0 at aa 10-32 and 39-61" FT CDS 25322..25594 FT /transl_table=11 FT /locus_tag="BP2324" FT /product="conserved hypothetical protein" FT /note="Similar to others Escherichia coli hypothetical FT protein yeiw yeiw or b2170.1 SW:YEIW_ECOLI (P58039) (84 aa) FT fasta scores: E(): 2.8e-21, 65.47% id in 84 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa1578.1 FT pa1578.1 SW:YF7A_PSEAE (P58040) (84 aa) fasta scores: E(): FT 4.2e-17, 56.09% id in 82 aa" FT /db_xref="InterPro:IPR005358" FT /db_xref="UniProtKB/TrEMBL:Q7VWD6" FT /protein_id="CAE42597.1" FT /translation="MSATLSCRPGCGACCIAPSISSPIPGMPQGKPAGSRCVQLDDDMR FT CRIFGHPDRPDVCSSLQPSTELCADDREQAMTWLLKLEELTLPAR" FT CDS complement(25719..26840) FT /transl_table=11 FT /locus_tag="BP2325" FT /product="putative transferase" FT /note="May be involved in LPS biosynthesis. Similar to many FT eg. Pseudomonas aeruginosa glucosyltransferase I WaaG FT TR:Q9S648 (EMBL:AF090724) (373 aa) fasta scores: E(): FT 3e-13, 29.21% id in 356 aa, and to Serratia marcescens FT putative glycosyltransferase TR:Q9X977 (EMBL:U52844) (375 FT aa) fasta scores: E(): 3.6e-10, 28.98% id in 376 aa" FT /db_xref="GOA:Q7VWD5" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7VWD5" FT /protein_id="CAE42598.1" FT /translation="MRIALLVDRFGNRFGGAEAYGVELMRILARRHDVTVVAREYDSDL FT ALPFLPVRVSCRLPSWLRVLYFAWRAARLTRAGFDIVHSHMNGGAGDVQVMHVTPVRYN FT WLCRPGLRRRLTAWTSPRVATYLALEKARVAQRPGKRVVAVSELIVEQMRDAYGVGLPM FT ETIPPGVQLPAPSDPARRAATRAALGWGEDDLVCLLVARNPLRKGLPALLAALAHLPAR FT YRLLVVGADGPARQCVGDSGLADGRVRLVDPTPGVAPYYEAADIYVHPTLNDSYGMAPL FT EAMSHGLPVVVSSADYCGFAQYLADGRDALILRDPRDGAEVARAVAAIGDGAPLRAALS FT AAGLALARAQSWEAVAARYETLYETLLRERAVG" FT misc_feature complement(25803..26303) FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1" FT CDS complement(26848..27573) FT /transl_table=11 FT /locus_tag="BP2326" FT /product="putative polysaccharide deacetylase" FT /note="Similar to Xylella fastidiosa hypothetical protein FT Xf0878 TR:Q9PF00 (EMBL:AE003927) (257 aa) fasta scores: FT E(): 2.5e-36, 47.89% id in 238 aa, and to Streptomyces FT coelicolor putative polysaccharide deacetylase SCC61a.31 FT TR:Q9KYG2 (EMBL:AL356595) (229 aa) fasta scores: E(): FT 1.9e-20, 38.29% id in 235 aa" FT /db_xref="GOA:Q7VWD4" FT /db_xref="InterPro:IPR002509" FT /db_xref="UniProtKB/TrEMBL:Q7VWD4" FT /protein_id="CAE42599.1" FT /translation="MPIPILMYHQIGEPAPRGTPYRGLTVHPASFRRQMTWLRRFGYRG FT LSMRDLMPYVRGERSGKVFGITFDDGYRNVHRNAMPVLGELGFTATNYFVAHQLDGGNV FT WDLEKGIPFSALMNAQEMREWHQAGNEVGSHTLDHVHLPRMAADEARRQICQSKDELEQ FT VLGAPVTAFCYPYGDHTDEHRAMAREAGYDNATLTVRGLASAADDPYGLPRVTVSRSTH FT LLRFLQKTLTGYEDRRRRG" FT misc_feature complement(26896..27396) FT /note="HMMPfam hit to PF01522, Polysaccharide deacetylase" FT CDS 27876..29552 FT /transl_table=11 FT /locus_tag="BP2327" FT /product="putative outer membrane protein" FT /note="Similar to many eg. Escherichia coli outer-membrane FT protein YhbX precursor or b3173 SW:YHBX_ECOLI (P42640) (541 FT aa) fasta scores: E(): 4.4e-53, 36.45% id in 480 aa" FT /db_xref="GOA:Q7VWD3" FT /db_xref="InterPro:IPR000917" FT /db_xref="UniProtKB/TrEMBL:Q7VWD3" FT /protein_id="CAE42600.1" FT /translation="MPDRAPRAPRPCPPSCLRIAMTRFLQAWVPLLVAGIAPIWIQARL FT HGDSFSPRVYLLGVTLMLACALLWRRAWTRPAAVLLCTVLAANLGLAQFCYQAYGQRFN FT FGFAYSILTTNYDETVQLLTQHWRSAALTLAVLALLLWVVRRAAHELPTRWLALGAAAT FT ALVFFGSWLRYELAMRGAADEYYPSIERTVSRSPMFNMRYFIQASYDQSLLDTAGRHRV FT THALTRRDTGIDTYVVVVGESARRANWGLYGYARDTTPRAAAERDRMTLYTQAAAPAPL FT TIMAVPLTLSAATVDSYDPRLFGDNVVALAGDAGFRTYWLSNQARLGRYDTSVTAMANM FT AHFKTWADAPYDEALLPLLDAALAEPGRKVVFLHINGNHDNYCTRYPETATVYQGGAPY FT EDCYDNSIRYVDALLGAVMDRLRERRASLLFYPDHGLERHESVLGTFYHGGVRPSREAF FT DIPMFIWNSPAAPAPARREYDAPYSTEDNYGLILDWLGVATGVDDCKHRPAAPACAGRP FT VRVIDAKRDVYAYADLAPHPDGRRPATPPRVGPRDQALNVR" FT misc_feature 27912..29474 FT /note="HMMPfam hit to PF02418, Integral membrane protein of FT unknown function" FT misc_feature join(27945..28004,28032..28085,28104..28172,28251..28304, FT 28338..28391) FT /note="5 probable transmembrane helices predicted for FT BP2327 by TMHMM2.0 at aa 24-43, 53-70, 77-99, 126-143 and FT 155-172" FT CDS complement(29531..30643) FT /transl_table=11 FT /locus_tag="BP2328" FT /product="putative transferase" FT /note="May be involved in LPS biosynthesis. Similar to FT Deinococcus radiodurans conserved hypothetical protein FT dr1555 TR:Q9RU40 (EMBL:AE001999) (411 aa) fasta scores: FT E(): 1.8e-12, 27.9% id in 301 aa, and to Rhizobium meliloti FT lipopolysaccharide core biosynthesis mannosyltransferase FT lpsb lpsb or r01572 or smc01219 SW:LPSB_RHIME (Q9R9N2) (351 FT aa) fasta scores: E(): 7.6e-08, 25.58% id in 383 aa" FT /db_xref="GOA:Q7VWD2" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7VWD2" FT /protein_id="CAE42601.1" FT /translation="MKILYTNFHGRNGGGHVTYVINLARALAPGHALTVAVPGTSRLYR FT YAREIPGVEVVDMQYTTRLSSWFHDRAALRRLIAEGGYDIIHCNGSADHKQVMLATLGL FT RRRPRIVFTKHNDHPLGSLGNRLRATLATDHSIAVSAYVHGLLADSPYSRHPITTVRHG FT IDTDYYAPPDAATAAQWRERYFGPDWRGRLLLGSAGGTDYDKGWLDLVAAAGSLPAPLR FT ERVRILVAGDPPNQAKLDRVREHGMQDQMVFPGLLDDVREALGACDAGYVLSYREALSF FT ACREMMALGRPVLASNAGGLPENITAGRDGWVVPVHDVPAIAAVLREMLEQPERLAEMG FT RQARATAEREFGLRDFAQATLAVYQRTLSA" FT misc_feature complement(29606..30112) FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1" FT CDS complement(30640..31392) FT /transl_table=11 FT /locus_tag="BP2329" FT /product="putative transferase" FT /note="May be involved in LPS biosynthesis. Similar to many FT eg. Haemophilus ducreyi beta 1-4 glucosyltransferase LgtF FT TR:Q9L875 (EMBL:AF215936) (252 aa) fasta scores: E(): FT 5.2e-38, 44.49% id in 245 aa" FT /db_xref="GOA:Q7VWD1" FT /db_xref="InterPro:IPR001969" FT /db_xref="UniProtKB/TrEMBL:Q7VWD1" FT /protein_id="CAE42602.1" FT /translation="MTLSVIIITKNEAANILACLESVAFADEFIVVDSGSTDNTVELAR FT DFGARVEVTPDWPGFGPQKNRALDLATGDWVLSIDADERVTPELASEIQAAMAGATADC FT YEIARLSDFCGRFIRHSGWWPDYVLRLFRRGSARFTDAAVHERVVPAQGQPARLRGHFL FT HYPYNNFDALIAKVNRYSSDAAAMMHARGKRATVFSALGHGFWTFVRIYLIRRGFLDGR FT HGLVLAVTAAAGSFFRYAKLMFLSEPRK" FT misc_feature complement(join(30655..30720,30751..30807)) FT /note="2 probable transmembrane helices predicted for FT BP2329 by TMHMM2.0 at aa 195-214 and 224-246" FT misc_feature complement(30934..31383) FT /note="HMMPfam hit to PF00535, Glycosyl transferase" FT CDS complement(31389..32240) FT /transl_table=11 FT /locus_tag="BP2330" FT /product="conserved hypothetical protein" FT /note="Similar to many eg. Xylella fastidiosa hypothetical FT protein Xf1469 xf1469 TR:Q9PDB0 (EMBL:AE003977) (284 aa) FT fasta scores: E(): 1.4e-61, 56.02% id in 282 aa" FT /db_xref="GOA:Q7VWD0" FT /db_xref="InterPro:IPR002509" FT /db_xref="UniProtKB/TrEMBL:Q7VWD0" FT /protein_id="CAE42603.1" FT /translation="MRNAPNVPVLMYHHVTPAGGMIAATPEVFERQIAALARAGYRSLG FT TAEFAAYLDGAPVPEKSVLITFDDGYLNNWVYAHPILQRHGMKAVLFLITGLLGDGPAR FT PCAGQDGPLPPAPDHDESKRLIAAGRADEVMLRWSEVQAMLAAGTFEVHSHTHTHTRWD FT KQCGPDVAAKRAHIVQELADSRRALQARLGEVSDHLCWPQGYFDADYVQAARDAGFRHL FT YTTDALGQNVPGGDPAHIYRFAVRNRAGGWLNRRIWLARHPWIGPRYHAWKAWKKKLRR FT RA" FT CDS complement(32233..33336) FT /transl_table=11 FT /locus_tag="BP2331" FT /product="putative transferase" FT /note="May be involved in LPS biosynthesis. Similar to FT Xylella fastidiosa hypothetical protein Xf1470 TR:Q9PDA9 FT (EMBL:AE003977) (376 aa) fasta scores: E(): 7e-29, 44.41% FT id in 376 aa, and to Rhizobium meliloti lipopolysaccharide FT core biosynthesis mannosyltransferase LpsB or r01572 or FT smc01219 SW:LPSB_RHIME (Q9R9N2) (351 aa) fasta scores: E(): FT 3.2e-13, 29.64% id in 280 aa" FT /db_xref="GOA:Q7VWC9" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7VWC9" FT /protein_id="CAE42604.1" FT /translation="MRPLRIVHSEAATSFGGQEGRIFKEMTAMRERGHHMEAICQPQAQ FT LARRLAEASFTVHTLEMDGPRNYLRGVLSLRRLLRQGRYDVLNTHSRRDTVIAAAAGRL FT AGTPLIVRTRHLSNRVGSLWSYTGLPHRVTTVSDHVRQHLIERGVPAGHIATVYSPIVL FT PPPIEHSTLRGELGLAADDIVVGCVAVMRATKGHRELIDAMRPLMAERANLHLVFVGGG FT SPMFEQTQAYVAELGLQARIHLMGTRNDVPNLLAGFDLFALATRQEASGTVYVEAEACG FT LPVVGTDVGGVSEMMRDGETGILVPVDDPAALGAALRRLIDDRALRRRMGEAGRRMVRD FT EKVFAPERLAERTEAIYRQWLAERGHA" FT misc_feature complement(32326..32835) FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1" FT CDS complement(33336..36827) FT /transl_table=11 FT /gene="dnaE" FT /gene_synonym="polC" FT /locus_tag="BP2332" FT /product="DNA polymerase III alpha subunit" FT /EC_number="2.7.7.7" FT /note="Similar to many eg. Escherichia coli DNA polymerase FT III alpha subunit DnaE or PolC or b0184 SW:DP3A_ECOLI FT (P10443) (1160 aa) fasta scores: E(): 0, 48.89% id in 1176 FT aa. Its C-terminal region is also similar to BP2208, FT 35.149% identity (37.238% ungapped) in 606 aa overlap." FT /db_xref="GOA:Q7VWC8" FT /db_xref="InterPro:IPR004805" FT /db_xref="UniProtKB/TrEMBL:Q7VWC8" FT /protein_id="CAE42605.1" FT /translation="MSEAVTNPPPFVHLRVHSEFSVSDGIVRISDLIKRVAKLGQPAVA FT LTDLSNIFGLIKFYKGARGAGVKPVAGSDVWLTNDDDREKPFRLLLLVRNHQGYLNLCE FT LLTRSFLENQYKGRAEVRREWLQGQEGLIVLSGARGGDVGQALEAGNAVTALSLARQWG FT QLFPGSYYIELQRAGFDGDETYTQAAMRLAAEAGLPVVATHPVQFLDRDEFQAHEARVC FT IAEGEILANPRRVRRYTQDQYLLSSEEMARRFADVPSALANTVEIARRCNLTLVLGKPR FT LPNFPTPDGVTLDDYLVQLSEEGLEKRLQFLFPDEAERNAKRDQYYERLRWECKTIIQM FT GFPGYFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNP FT ERVSMPDFDIDFCQDNRERVIDYVKMKYGREAVSQIATFGTLGAKAVVRDAGRVLDMPY FT LFCDALSKLIPFNPADPWTLERTLKDEPAFKDRYEQEEEVRALVDLARPLEGLTRSIGM FT HAGGVLIAPGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWA FT VRFVRQFNADKRDFDVMALSLDDQAAYKVLCDANTTAVFQLESRGMKELLKKLRPSTFE FT DIIAMLALYRPGPLESGMVDDFVNRKHGRAAVDYFHPDLEGTLRSTYGVIVYQEQVMLI FT SQIIGGYSLGGADLLRRAMGKKKPEEMAKHRELFEQGAREKGHDPDLAVKLFDLMEKFA FT GYGFNKSHSAAYALIAYQTAWLKAYHPTEFLAATLSSDMDDTDKVQIFVRDAQDNGVEV FT LPPDVNASGYRFEPVADKHTEQGKPPRTMRYGLGAVKGTGQGAVEEILRARQEGGPFAN FT LFDFCRRVSKHAVNRRTIEALIKAGAFDTIEPNRAAMLVSVGTAMEAAEQAARSANQSS FT LFGDDSGDVVAGELTKVAPWNLHTTLTEEKTALGYYFSGHLFDAWRDEVRRIVPMQLAR FT LEPQRDLQWMCGVLAGVRTMMTRRGKMVFAVLDDGTAQIEISVFNELYEKHRGRLREDQ FT LLVVQGKVSNDEYSGGMRIVAEQLYDLQLAREARAKSLRIRLNGQADAARLRQLLNPFR FT AEPENGVPGVPVDVVYRRNNFLCTVRLGEDWRVRMADTLLENLNDWAKPDGVEVTY" FT misc_feature complement(33603..33839) FT /note="HMMPfam hit to PF01336, OB-fold nucleic acid binding FT domain" FT misc_feature complement(36597..36794) FT /note="HMMPfam hit to PF02231, PHP domain N-terminal FT region" FT CDS 36938..37864 FT /transl_table=11 FT /locus_tag="BP2333" FT /product="putative dioxygenase" FT /note="Similar to Xylella fastidiosa aspartyl/asparaginyl FT beta-hydroxylase xf2100 TR:Q9PBP0 (EMBL:AE004025) (301 aa) FT fasta scores: E(): 2.1e-76, 57.33% id in 300 aa, and to FT Salmonella typhimurium, and putative dioxygenase LpxO or FT PagQ TR:Q9KGX6 (EMBL:AF279438) (302 aa) fasta scores: E(): FT 2.4e-69, 55.67% id in 291 aa" FT /db_xref="GOA:Q7VWC7" FT /db_xref="InterPro:IPR007803" FT /db_xref="UniProtKB/TrEMBL:Q7VWC7" FT /protein_id="CAE42606.1" FT /translation="MPQRRPLRTMKWLIPGLWLASILFAHFRGRVRLSLSRQMLDHSVL FT LAPVNAFMVLTSRVPTTPYLTTSEIPELKVLDDNWETIRDEALKMAELRRIKAAERHDD FT IGFNSFFKYGWKRFYLKWYDARHPSAEELCPKTVAILKSLPKVKAAMFAELPPGGKLNP FT HRDPFSGSLRYHLGLATPNDDRCYIAVDGESYSWRDGESVVFDETYVHEAHNKSEGNRI FT ILFCDVERPLKWRWAEAFNRWFGRVVMSAASSPNDAGDQTGAINKLTHAHWVIDQKRKQ FT FKAWNRTVYKATKWGLIALVAIGFLAL" FT misc_feature 36971..37024 FT /note="1 probable transmembrane helix predicted for BP2333 FT by TMHMM2.0 at aa 12-29" FT CDS complement(37996..41880) FT /transl_table=11 FT /locus_tag="BP2334" FT /product="putative ATP-dependent helicase" FT /note="Similar to Pseudomonas aeruginosa probable FT ATP-dependent helicase pa3297 TR:Q9HYU6 (EMBL:AE004752) FT (1326 aa) fasta scores: E(): 1.4e-181, 47.69% id in 1325 FT aa, and to Escherichia coli ATP-dependent helicase HrpA or FT b1413 SW:HRPA_ECOLI (P43329) (1300 aa) fasta scores: E(): FT 2.5e-85, 46.11% id in 1275 aa" FT /db_xref="GOA:Q7VWC6" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VWC6" FT /protein_id="CAE42607.1" FT /translation="MPEASRPPERAAAARSEPRPERPIPAISYPEDLPVSARRQEIARA FT IAAHQVVIVSGETGSGKTTQLPKICLELGRGRRKMIGHTQPRRLAATSVAKRIAEELRT FT PMGEVVGYQVRFNDRTGPNASIKLMTDGILLAESQRDPLLRRYDTIIIDETHERSLNID FT FLLGYLKQLLPRRPDLKVIITSATIDAERFARHFAAGPERPAPVIEVSGRLYPVEVRYR FT PVQPPMSDEAAAAPAKGGRERSAGDEERDLIDAIVDAVDECARHGPGDVLVFLPGEREI FT RESAEALRKRHPVGTEVLPLYARLSQAEQEQIFHPRGNARRVVLATNVAETSLTVPGIR FT FVVDSGLARVKRYSWRNKVEQLRIEPVSRASANQRAGRCGRIGPGLCIRLYDETDFNAR FT APFTDPEVLRSSLASVILRMKSLKLDDIEQFPFVEAPPGRAVADGYHLLQELGAIELAG FT DGEAAEAGGGGAAFRLTRTGQELAKLPVDPRIGRMILAAREQQCLAEMLIIAAALSVQD FT PRDRPMAEREAAESAHAKFADDKSEFLSFLKLWRWYGEQVQHKASQRKLVALLRQNFLS FT PVRLREWHDVHTQLAALVGEQGWRLNQSEATYEQLHMALLSGLLGNIGFKGEEGGQYHG FT AREIRFHIHPGSRLVKKAGRWIVAAELVETTRLYARCVARIEPVWLERAAAHLLRRNWS FT DPRWEKKAGQVVANERATLYGLLVYNGRRVHYGRINPQHARELFIRQTLVPGEIDTRLP FT FVAHNRKLIAGIEKLEHQTRRPDILVDDELIYAFYDRQLPADISQAASLEKWVNGLDKA FT AAARLLLTRDELMRHEAAGVTTDVFPKKVEWQGVAMPLDYHFEPGSPRDGVTLSVPLFA FT LNQLDAQRCEWLVPGMLKEKAHLLLKSLPQKLRRHCVPLPDYAAGFYERWYERQADPQQ FT GLVDALIADMWDQVQVRPAPGDFKLETLPAHLFMNFKVVDEHGRMLAAGRNLAQLKAEL FT GKQAQATFQQLAARDSDVAQALAHENLTSWSFGPLPEIMEIKRGGQSVIGYPALVDRGA FT HCDLDVFDDPDEARRHHRAGLLRLFRLALREQVKFLEKNLADLTKMSMLYMALGTQEEL FT RDQIIDCALAQACLAEPWPVNEQQFEARRQEGKGRLGLLAQEVARMAHAILAEYGALQR FT KLPQARPHAAAYADLQQQLGVLMPKWFVRDTPYAQLAHYPRYLKAAVARIDKLRADPAR FT DARLMGEMAPILTQYQRARSALKGAPDPRLDEFRWLLEELRVALFAQELRTPMPVSVKR FT LMKAWESLRR" FT misc_feature complement(40732..41037) FT /note="HMMPfam hit to PF00271, Helicase conserved FT C-terminal domain" FT misc_feature complement(41692..41715) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 42013..43416 FT /transl_table=11 FT /gene="argA" FT /locus_tag="BP2335" FT /product="amino-acid acetyltransferase" FT /EC_number="2.3.1.1" FT /note="Similar to Pseudomonas aeruginosa amino-acid FT acetyltransferase ArgA or pa5204 SW:ARGA_PSEAE (P22567) FT (432 aa) fasta scores: E(): 2.8e-71, 45.7% id in 431 aa, FT and to Escherichia coli amino-acid acetyltransferase ArgA FT or b2818 or z4135 or ecs3675 SW:ARGA_ECOLI (P08205) (443 FT aa) fasta scores: E(): 9.1e-71, 42.06% id in 435 aa" FT /db_xref="GOA:Q7VWC5" FT /db_xref="InterPro:IPR010167" FT /db_xref="UniProtKB/TrEMBL:Q7VWC5" FT /protein_id="CAE42608.1" FT /translation="MQDRCPHQDHRSIPTIMPDLEPDTVSALEAPEFAPAQFVRWFREV FT APYVHAFRGKTFVVAFGGELVQAGALNILVQDLSLLSALGIHLVLVHGSRPQVNEQLRL FT KGYTQQFGRGLAPTDPAALECAKEAAGEIRLDIEAAFSQGLPNTPMSHSHIRVLSGNFV FT TARPTGVVDGIDYKHTGQVRKIDVDALKFAIEQGSVVLLSPLGFSPTGDAFNLAMEDLA FT TSVAVALRAEKLIFLSGEPGVLDGNGAVDTELARVDADALLARGKLDEDTTYFLQHASL FT AVKRGVARAHLVPYALDGSVLLEIFTHDGVGTMVVEDTLDDLRAATLDDVGAILSLIEP FT LEADGTLVPRPRSAIERDVERFTVLEHDGVIYGCAALYPFPEDQMAEMACLIVHPEWQG FT SGEGEILLRHMESRARASGARRLFVLTTRTSHWFMKRGFVRGGVADLPRDKQNNYNRSR FT NSLVFIKKL" FT misc_feature 42175..42801 FT /note="HMMPfam hit to PF00696, Amino acid kinase family" FT misc_feature 43099..43329 FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family" FT CDS 43490..43762 FT /transl_table=11 FT /locus_tag="BP2336" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis (serogroup A), and FT hypothetical protein nma0419 or nmb2021 TR:Q9JQP5 FT (EMBL:AL162753) (88 aa) fasta scores: E(): 2.2e-19, 60.92% FT id in 87 aa, and to Escherichia coli, and protein YggX or FT b2962 or z4307 or ecs3838 SW:YGGX_ECOLI (P52065) (90 aa) FT fasta scores: E(): 1.2e-15, 54.65% id in 86 aa" FT /db_xref="GOA:Q7VWC4" FT /db_xref="InterPro:IPR007457" FT /db_xref="UniProtKB/Swiss-Prot:Q7VWC4" FT /protein_id="CAE42609.1" FT /translation="MSRIVNCVKLKREAEGLDFPPYPGELGTRIWQQISKEAWEEWKQI FT QTRLVNENRLNLADARARKYLQQQMERFLFEDGTVEAQGYVPPSA" FT CDS 43816..45696 FT /transl_table=11 FT /locus_tag="BP2337" FT /product="putative phospholipase" FT /note="Similar to Pseudomonas aeruginosa non-hemolytic FT phospholipase C precursor PlcN or pa3319 SW:PHLN_PSEAE FT (P15713) (692 aa) fasta scores: E(): 1.9e-64, 45.1% id in FT 674 aa" FT /db_xref="GOA:Q7VWC3" FT /db_xref="InterPro:IPR008475" FT /db_xref="UniProtKB/TrEMBL:Q7VWC3" FT /protein_id="CAE42610.1" FT /translation="MPAATDPDIAALVARAAAVAPERRSGTLRDLDHIVILMQENRGFD FT HYYGALPGARGRADPHRAPTPDGDVFVQAHAGQRLAPYPLAPALPPGQPLGHLTPHTWD FT DAQRAWNDGRMDQWLAAKGRLGMGYYRPEELPLQTALARAFTLCEAYHCSMHAGTNPNR FT LFLWTGTNDPHGQAGGPALVNTHDRPGPAHEGYAWTTYPERLQAAGVDWAIYQDMADNY FT HDNPLAGFRQYRAELAGGAARAPLRERALSTRTLAALAEDAANGRLPQVAWIIAPAADS FT EHPEVSSPAQGAAFSARVLDILTRAPALWRRCALLLTYDENDCFFDHMPPPAPPGAAGG FT GSTADTAGEYHQARGGPSAGTPDDPRALHGRAYGLGPRVPMLVVSPFSRGGWLDARVYD FT HTSVIRLLESRFGVAEPNISPWRRAVCGDLSHAFDFTGAQDQAGAPGPRSRPSPYACHV FT EAWAADGRQRVRMANPGHATLVLHVYDCLRLAQGPRRYTIEPGRQWEDSWPDAGADLAC FT DLWILGPDGFHRHIRRHGAAAPLAAAWRDQPPALLLENRGAQALQARIESAYGEAPALL FT RLAPGEQAAWPYEPASRGWYDLTASAAGQSLRLAGRMRAAGPGRPDPRLG" FT CDS complement(45710..46516) FT /transl_table=11 FT /locus_tag="BP2338" FT /product="putative transport protein" FT /note="Similar to proteins thought to be involved in FT phosphate transport eg. Pseudomonas putida phosphate FT transport system protein PhoU SW:PHOU_PSEPU (Q9Z410) (256 FT aa) fasta scores: E(): 6.3e-38, 46.98% id in 249 aa, and to FT Escherichia coli phosphate transport system protein PhoU or FT nmpa or b3724 SW:PHOU_ECOLI (P07656) (241 aa) fasta scores: FT E(): 2.3e-29, 40.92% id in 237 aa" FT /db_xref="InterPro:IPR008170" FT /db_xref="UniProtKB/TrEMBL:Q7VWC2" FT /protein_id="CAE42611.1" FT /translation="MRPTTQGVRMTEHTNKQFDADLQHVRSQFLQMGGIVEAMIHEAVE FT AIPAGDMSMVEKVREREKEVNRHEVEIDERISLILARHQPTAIDLRTLLAVSKMLTDME FT RSGDEAEKIATAVRRMYENDQRHIPLIELRHMAVNVGNMLRQALDAFARLDPILAAQVV FT RSDKEVDKEWKAALRNLITYMMEDPRTISRAIDMIFIARALERIGDHAKNMAERVIYMV FT KGADVRHTGVKNTERLARGEEAIEKADKAEKAGNAETPAPTPEVPQ" FT CDS complement(46644..47324) FT /transl_table=11 FT /gene="rpiA" FT /locus_tag="BP2339" FT /product="ribose 5-phosphate isomerase a" FT /EC_number="5.3.1.6" FT /note="Similar to Escherichia coli, and ribose 5-phosphate FT isomerase A RpiA or b2914 or z4252 or ecs3785 SW:RPIA_ECOLI FT (P27252) (219 aa) fasta scores: E(): 4.9e-45, 59.72% id in FT 221 aa" FT /db_xref="GOA:Q7VWC1" FT /db_xref="InterPro:IPR004788" FT /db_xref="UniProtKB/Swiss-Prot:Q7VWC1" FT /protein_id="CAE42612.1" FT /translation="MLTQQELKQQAADAALELVEQVAGPDVIIGVGTGSTADLFIDGLA FT CFKGRLRGTVASSERSAARLAGHGLAVLDLNDVQSMPIYVDGADEIDPNLHMIKGGGGA FT LTREKIVASVARRYICIADESKLVERLGRFPLPVEVIPMARNAVARGLSRLGGQPALRE FT GFVTDNGNIILDVAGLSIADAPGLEKTINDIPGVVTCGLFALAGADVALLATQDGIRRL FT ERRG" FT CDS complement(47378..49036) FT /transl_table=11 FT /locus_tag="BP2340" FT /product="putative acyl-CoA dehydrogenase" FT /note="Similar to Escherichia coli AidB protein or b4187 FT SW:AIDB_ECOLI (P33224) (541 aa) fasta scores: E(): 2.3e-87, FT 48% id in 550 aa" FT /db_xref="GOA:Q7VWC0" FT /db_xref="InterPro:IPR006091" FT /db_xref="UniProtKB/TrEMBL:Q7VWC0" FT /protein_id="CAE42613.1" FT /translation="MQPFLTHQVTNQVAPLEDYSLYETDPVLQQAVRREGAAAFESELR FT EHGAWLGRAQTLEAAAEANRNSPRLLAYDPTGHRQDKVAFHPAWNALMTGIVARGLHSR FT AWAQPVPGAHVARAAAYLMQGQVEAGTLCSTTMTHAAVPLLAREPAGVIDYGRDWLDVL FT YSREFDASDAPIGRKRGALIGMGLTEKQGGSDLRSVATRAEPVGAPGRGQAYLLTGHKW FT FLSVPHADAHLVLARTDEGLGCFFVPRWVPDGPRNAVRLRRLKDKLGNRSNASAEVEFE FT QAWGAMLGEPGRGTAVLLEMAATTRLDCVLGSAALLRQAVAQALHHAAQRQAFGTALLA FT QPLMRVLLADLALENEAATVLALRLARAVDERADPVARALVRVGTPAAKLWVCKRAIAA FT LGECMEVLGGNGYVEEAPLARLYREAPVNSIWEDSGNVMALDVLRGLAREAEALPGLRD FT ELDRARGVVPAYDQALDDWLALVAQPDSVPQALARRVAAGLATLWQAALLIRHAPTPVG FT AAFAATRLHAPAGIVGAAPIDDPAPILARAWPGIC" FT misc_feature complement(47705..48505) FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT misc_feature complement(47765..47824) FT /note="ScanRegExp hit to PS00073, Acyl-CoA dehydrogenases FT signature 2." FT misc_feature complement(48443..48481) FT /note="ScanRegExp hit to PS00072, Acyl-CoA dehydrogenases FT signature 1." FT misc_feature complement(48602..48886) FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT CDS complement(49116..50477) FT /transl_table=11 FT /locus_tag="BP2341" FT /product="conserved hypothetical lipoprotein" FT /note="Similar to Xylella fastidiosa hypothetical protein FT Xf0413 TR:Q9PG89 (EMBL:AE003892) (456 aa) fasta scores: FT E(): 1.9e-67, 50.8% id in 437 aa, and to Streptococcus FT pyogenes hypothetical protein Spy0266 TR:Q9A1H6 FT (EMBL:AE006493) (423 aa) fasta scores: E(): 1.6e-44, 41.83% FT id in 392 aa" FT /db_xref="InterPro:IPR003798" FT /db_xref="UniProtKB/TrEMBL:Q7VWB9" FT /protein_id="CAE42614.1" FT /translation="MEIGLESYLPWITVAAAVFALLACLLALRGRGGDARLQALLDGLE FT RVDRGLRADLAESQRGLRAELAESMRALRAEMAQSQEELRATLGRDARAARAEHGESLA FT RFASQFGERLQGLVELNDRRMQDVRQVVDQRLQALQADNGARLEEMRRTVDEKLHATLE FT QRLGESFRMVSDRLEAVHKGLGEMQTLAAGVGDLKRVLTNVKSRGTWGEVQLARLMEDA FT MTPEQYARNVKPVPGSDAVVEFAIRLPGKDEGGGPVWLPIDAKFPKEEYERLMDAQDAA FT EQEAARAAGAALAKAVETQARLIASKYVAPPHTTDFAIMFLPTEGLYAEVLRRPGLLDK FT LHGLRVNVAGPANLAALLNSLQMGFRTLAIERRSSEVWQVLRAVKTEFAKFGESLATVK FT KTLDTASNRIGQTEVRTRAMLRNLRTVEALPEAEAARLLGDEPDTLGADQGSPS" FT misc_feature complement(50388..50453) FT /note="1 probable transmembrane helix predicted for BP2341 FT by TMHMM2.0 at aa 26-48" FT misc_feature complement(50406..50438) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 50657..51316 FT /transl_table=11 FT /locus_tag="BP2342" FT /product="hypothetical protein" FT /note="Weakly similar to Escherichia coli O157:H7 EDL933 FT hypothetical protein YrbL TR:AAG58341 (EMBL:AE005548) (210 FT aa) fasta scores: E(): 0.023, 26.57% id in 207 aa. Also FT similar to BP3672, 45.673% identity (47.500% ungapped) in FT 208 aa overlap." FT /db_xref="InterPro:IPR019647" FT /db_xref="UniProtKB/TrEMBL:Q7VWB8" FT /protein_id="CAE42615.1" FT /translation="MPGSGYAAMFGPLDLSQARLLAQGGDRYVFQHPHEPALLVKVMDM FT EARAVYLEARPFKRWYKQFQRESAYRVYLNEITEYVTTSTSASGVWQVPLARIVGLAQT FT SLGLGLLAEKITDAAGNMAPTVSDLVKRGEFDTALAQRLDRFFEDLADAHIVIHDISAS FT NIACGRNAEGREGLYLIDGFGVLPLIPTYAWSRRLNRKRIMRKYAELRARMPAPAP" FT CDS complement(51324..52040) FT /transl_table=11 FT /locus_tag="BP2343" FT /product="putative methypurine-DNA glycosylase" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4010 TR:Q9HX17 (EMBL:AE004818) (239 aa) fasta FT scores: E(): 2.1e-65, 70.48% id in 227 aa. Also some FT similarity to many DNA-3-methyladenine glycosylases eg. Mus FT musculus DNA-3-methyladenine glycosylase Mpg or Mid1 FT SW:3MG_MOUSE (Q04841) (333 aa) fasta scores: E(): 1.2e-08, FT 33% id in 203 aa" FT /db_xref="GOA:Q7VWB7" FT /db_xref="HSSP:1F6O" FT /db_xref="InterPro:IPR003180" FT /db_xref="UniProtKB/TrEMBL:Q7VWB7" FT /protein_id="CAE42616.1" FT /translation="MPAPARTARPQPGPALPAAFFNRDAQQLARDLLGKVVRHRVDGLW FT LSARIIETEAYYLAEKGSHASLGYTHKRRALFMDGGVVYMYYARGGDSLNFSAAGPGNA FT VLIKSGHPWVDEVSGPRALACMQRLNPDAQGQPRPPARLCAGQTLLCRALGLKVPQWDA FT KAFDPRRFFVEDVGVRLDRLVRTTRLGIPAGRDEHLPYRYVDPAYAAFCTRNPLRHGQQ FT AGRDFDWVDPDGALYV" FT misc_feature complement(51417..51992) FT /note="HMMPfam hit to PF02245, Methylpurine-DNA glycosylase FT (MPG)" FT CDS complement(52045..52401) FT /transl_table=11 FT /locus_tag="BP2344" FT /product="conserved hypothetical protein" FT /note="Similar to many eg. Xylella fastidiosa hypothetical FT protein Xf0115 TR:Q9PH31 (EMBL:AE003865) (124 aa) fasta FT scores: E(): 1.9e-19, 49.12% id in 114 aa, and to Rhizobium FT meliloti hypothetical protein Smc00386 TR:CAC41743 FT (EMBL:AL591783) (116 aa) fasta scores: E(): 8.8e-13, 37.71% FT id in 114 aa" FT /db_xref="InterPro:IPR006660" FT /db_xref="UniProtKB/TrEMBL:Q7VWB6" FT /protein_id="CAE42617.1" FT /translation="MKQVTLYGLNKCSTCVKARDWLAARGVAHDFVDYRDHPVPAATLK FT QWAGKVGGWEKLVNRTSMTWRALSDERKAARSDAEWTALIAEYPALVRRPVTVTPDGEV FT TVGFSEKRYGERFA" FT CDS complement(52398..53207) FT /transl_table=11 FT /locus_tag="BP2345" FT /product="putative inner membrane permease polyamine FT transport protein" FT /note="Similar to Escherichia coli putrescine transport FT system permease protein PotI or b0857 SW:POTI_ECOLI FT (P31136) (281 aa) fasta scores: E(): 3.6e-58, 59.14% id in FT 257 aa, and to Neisseria meningitidis putative polyamine FT permease inner membrane protein NMA0818 TR:Q9JVJ1 FT (EMBL:AL162754) (295 aa) fasta scores: E(): 2.7e-55, 54.78% FT id in 261 aa" FT /db_xref="GOA:Q7VWB5" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7VWB5" FT /protein_id="CAE42618.1" FT /translation="MKGPNKSLRMLVLGLGYFFLYVPIISLMVFSFNDSPVVTSWTGFS FT LRWYGSLLEDSALLRAAWLSFKIAVLTATAATIIGTWAGYVLGRMGRFRGFTLYVGMLS FT APLVIPEVVLGISLLLMFVEMRGHLGWPEQNGVFTIWVGHVTLCMAFVAVVVQSRIRDM FT DRSLEEAALDLGATPIKVFFAITLPLIAPALVSAWLLAFTLSLDDVVIASFLSGPGSST FT LPMEVFSRVRLGLKPEINALATLFILAVGTCVIIANRLQWRKEADNR" FT misc_feature complement(join(52434..52490,52599..52664,52740..52796, FT 52842..52907,52947..53003,53121..53186)) FT /note="6 probable transmembrane helices predicted for FT BP2345 by TMHMM2.0 at aa 7-29, 68-87, 100-122, 137-156, FT 181-203 and 239-258" FT misc_feature complement(52512..52733) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature complement(52644..52730) FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature complement(52938..53030) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT misc_feature complement(53115..53207) FT /note="Signal peptide predicted for BP2345 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.678) with cleavage site FT probability 0.285 between residues 31 and 32" FT CDS complement(53204..54118) FT /transl_table=11 FT /locus_tag="BP2346" FT /product="putative inner membrane permease polyamine FT transport protein" FT /note="Similar to Pseudomonas aeruginosa polyamine FT transport protein PotH or pa0303 TR:Q9I6I8 (EMBL:AE004468) FT (293 aa) fasta scores: E(): 1.8e-66, 58.88% id in 287 aa, FT and to Escherichia coli putrescine transport system FT permease protein or b0856 SW:POTH_ECOLI (P31135) (317 aa) FT fasta scores: E(): 2.9e-65, 56.53% id in 283 aa" FT /db_xref="GOA:Q7VWB4" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7VWB4" FT /protein_id="CAE42619.1" FT /translation="MRRFALPRPSRRTVAIVPPFAWLVLFLLVPFLLVFKISFAELQFG FT IPPYTPLAEFKDEAVQLSLHLRGYVLLFTDSLYVATYLNSVKMAAITTLCCILIGYPIA FT YYIARSAPALRNLLLLAVILPFWTSLLLRVYAWVGILRNDGLLNKLLMSLGLISSPLEI FT YRTDLAVYIGLVYAYLPFFILPLYANLVKMDLRLLEAAYDLGARPWQAFWRITVPLSRP FT GVIAGAMLVFIPSVGEYVIPEMLGGADTLMMGRVMWNEFFNNTDWPMASAVTCVMVLLL FT LVPLALFQYNQIKQQDFAGGGRR" FT misc_feature complement(join(53255..53320,53381..53446,53546..53611, FT 53702..53767,53789..53854,54014..54079)) FT /note="6 probable transmembrane helices predicted for FT BP2346 by TMHMM2.0 at aa 13-35, 88-110, 117-139, 169-191, FT 224-246 and 266-288" FT misc_feature complement(53333..53554) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature complement(53465..53551) FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature complement(53999..54118) FT /note="Signal peptide predicted for BP2346 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.639) with cleavage site FT probability 0.499 between residues 40 and 41" FT CDS complement(54115..55242) FT /transl_table=11 FT /locus_tag="BP2347" FT /product="putative polyamine transport ATP-binding protein" FT /note="Similar to Neisseria meningitidis putative polyamine FT permease ATP-binding protein NMA0816 TR:Q9JVJ3 FT (EMBL:AL162754) (374 aa) fasta scores: E(): 1.1e-73, 55.28% FT id in 369 aa, and to Escherichia coli putrescine transport FT ATP-binding protein PotG or b0855 SW:POTG_ECOLI (P31134) FT (377 aa) fasta scores: E(): 2.5e-67, 52.79% id in 358 aa" FT /db_xref="GOA:Q7VWB3" FT /db_xref="HSSP:1G29" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VWB3" FT /protein_id="CAE42620.1" FT /translation="MSDIRYSAQHSADPDEFVKVSDVVKIFGDVVAVQSVNLSVRRNEI FT FALLGSSGSGKSTLLRMLAGFEDATSGQILLDGEDITNVPPYRRPVNMMFQSYALFPHM FT TVEANVAFGLKQEGVDRAEIHDRVFEALDLVQMAGYARRKPHQLSGGQQQRVALARSLV FT KRPKLLLLDEPMSALDKQIRQKTQIELVKILQQVGVTCIMVTHDQEEAMTMAHRLAVMT FT EGQIVQCGTPQDVYEFPNSRFVAGFIGSTNLFSGTIVVDEPDHVAIESGELTRPLYVSH FT GVSEPLGMEVHVSIRPERLVVLREQPEAEHNWAHGMVTHMAWMGSYGLYQIRLDSGKIV FT EASVPSLQLARQDAPGIDEEVFVSWDADSATVFSS" FT misc_feature complement(54571..55116) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(54757..54801) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(55072..55095) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(55249..56352) FT /transl_table=11 FT /locus_tag="BP2348" FT /product="putative polyamine transport protein" FT /note="Similar to Escherichia coli O157:H7 periplasmic FT putrescine-binding permease protein ecs0934 TR:BAB34357 FT (EMBL:AP002553) (370 aa) fasta scores: E(): 2.2e-71, 49.17% FT id in 362 aa, and to Escherichia coli putrescine-binding FT periplasmic protein precursor PotF or b0854 SW:POTF_ECOLI FT (P31133) (370 aa) fasta scores: E(): 5.3e-71, 48.89% id in FT 362 aa" FT /db_xref="GOA:Q7VWB2" FT /db_xref="HSSP:1A99" FT /db_xref="InterPro:IPR001188" FT /db_xref="UniProtKB/TrEMBL:Q7VWB2" FT /protein_id="CAE42621.1" FT /translation="MKFSARLRCVLGGAVLAVAMSPAVAQDKVVNVYNWAEYTAPDTIP FT GFEKETGIKVRYDVYDNNDTLQAKLLTGKSGYDVVVPSTHYASRQIEGGLYQKLDKSKI FT PNWKNLDPDVMALVATIDPGNQYVIPWGYGTNGLGYNVTKVRQIMGEGVDLANWDMLFK FT PENAAKLKECGISMLDEAAQVFPAVLKYLGKDPNSANTDDYKEALALLKQIRPYIRQFS FT SSGYIDELAVGDLCMVYGFSGDVMIARRRAQEARKPYEINYFIPKGGAPAWFDVMAIPK FT DAPHPEEAHAFINYIETPQVHAAITNTMFYPNANKAAREFVVKDVADNPMIYPPADMSK FT TLYVIKAQPLNVQRLQTRMWAELKSGR" FT misc_feature complement(55438..55560) FT /note="HMMPfam hit to PF01547, Bacterial extracellular FT solute-binding protein" FT misc_feature complement(56128..56151) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(56484..57218) FT /transl_table=11 FT /locus_tag="BP2349" FT /product="conserved hypothetical protein" FT /note="Similar to Xylella fastidiosa hypothetical protein FT Xf2153 TR:Q9PBJ1 (EMBL:AE004029) (259 aa) fasta scores: FT E(): 4.2e-33, 47.82% id in 230 aa, and to Vibrio cholerae FT hypothetical protein Vc0227 TR:Q9KVB9 (EMBL:AE004112) (251 FT aa) fasta scores: E(): 2e-21, 36.63% id in 232 aa" FT /db_xref="GOA:Q7VWB1" FT /db_xref="InterPro:IPR010440" FT /db_xref="UniProtKB/TrEMBL:Q7VWB1" FT /protein_id="CAE42622.1" FT /translation="MPADTRARTERLAWREAPAGAMLYDAARIEAPGPALFDPSSYGAA FT AQPVAAGGRQAAWFVATPGWQGVLRGYRCGGLAARVSRDAYVWQGEARTRGLREYRLLA FT HMREQGLAVPAPLAAGYWRYGLTYRAAILVERIPAARPLASLLDEPAWEAVARAIAAMH FT RAGVWHADLNAFNILLDPGGLAWLIDFDRGTAGGVSERGRQGNLARLRRSLVKVGGERG FT QDFWQRLEPAYRAAWARGTARA" FT CDS complement(57208..57633) FT /transl_table=11 FT /locus_tag="BP2350" FT /product="globin-like protein" FT /note="Similar to Burkholderia pseudomallei putative globin FT TR:AAK38159 (EMBL:AY030274) (170 aa) fasta scores: E(): FT 7.6e-35, 60% id in 140 aa, and to Mycobacterium FT tuberculosis, and hemoglobin-like protein Hbo GlbO or FT Rv2470 or Mt2546 or Mtv008.26 TR:AAK46846 (EMBL:AL021246) FT (134 aa) fasta scores: E(): 3.3e-09, 41.34% id in 104 aa" FT /db_xref="GOA:Q7VWB0" FT /db_xref="InterPro:IPR019795" FT /db_xref="UniProtKB/TrEMBL:Q7VWB0" FT /protein_id="CAE42623.1" FT /translation="MTTTRVQPISEPLDTSKTVFDMLGGEPGVRELVDRFYDLMDMESD FT FKALRDAHGPSLEQARDKLFWFLCGYFGGPDHYIERFGHPRLRARHLPFSIGEIERDQW FT VACMGRAMQDQQLPAALVDRLLQAFYGTADWMRNRAG" FT CDS complement(57633..60176) FT /transl_table=11 FT /locus_tag="BP2351" FT /product="putative inner membrane transport permease" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2858 TR:Q9HZY6 (EMBL:AE004712) (830 aa) fasta FT scores: E(): 7.8e-109, 42.34% id in 836 aa" FT /db_xref="GOA:Q7VWA9" FT /db_xref="InterPro:IPR003838" FT /db_xref="UniProtKB/TrEMBL:Q7VWA9" FT /protein_id="CAE42624.1" FT /translation="MMDFPDARSPARQGWLPTLRLGLRMMMRDARAGELRLLVLVLVLA FT LVVAVAAVTSVGFLADRVGRALERDAGQMLGADLVLEADEPVPAEFAQRARQAGLSVSS FT TLQFPSMASANGNAQLASLKAVEPGYPLRGSLRVAEAPFAQDAPTRDVPALGAVWVDAQ FT LLTLLGVQVGDTLGLGDARLRIERVITYEPDRGMQFVNVAPRVMLRTADLPATGLVAPG FT SRIGYALLAAGQPDAVAAYGQWLGQHLQRGQKLATLESGRPEVRRTLDRAQRFLALVAL FT LAVLISAVAVALAAGRFMQRHRDGIAVMRCLGAVQAQVTRMLVLEFALVGLAASAVGCL FT LGYAVHQGLVLALGQLIDTSLPAPSAIPAAQGVLTGLLMLLGFALPSLAQLRHVPPARV FT LRRDADRLRARGAGGYALGAVGLGLLIWWFAGDARLGAVVAGGFLGAFAVFALVAWLAV FT QALARLRRAAAGLPALRFALAGVVRRRAATITQVCALAIGLMALLLLTMTRTDLIAGWQ FT RTLPPDAPNRFLINVQPDQRDAVMQRLADAGLGQVHLWPMVRGRLVSVNGRPVGPDDFD FT EPRAKRLVDREFNLSYGDTLPESNRVEQGRWLRPDAAEVSLESGLARSLKLAVGDKLGF FT DIAGQQVEVVVSGTRRVDWDSMRVNFFAILSPQALADAPQSWITSFHLPPAKAAVLRDL FT VQAFPNLTVFDVGAILGQLQTVLDEVVKAVQLLFLFTLAAGVLVLAAALTATRDERVRE FT AAVLRALGATRRQLARAQRLELLAVGGLAGLLAAGGATAVAWVLSTQVFDFAISLQWWP FT WLAGALAGMLGAWAGGALALRGVLRTPPLVTLREA" FT misc_feature complement(57645..58262) FT /note="HMMPfam hit to PF02687, Predicted permease" FT misc_feature complement(join(57681..57746,57792..57857,57942..58007, FT 58653..58718,58803..58868,58884..58949,59010..59075, FT 59142..59207,59283..59348,60000..60065)) FT /note="10 probable transmembrane helices predicted for FT BP2351 by TMHMM2.0 at aa 37-59, 276-298, 323-345, 367-389, FT 409-431, 436-458, 486-508, 723-745, 773-795 and 810-832" FT misc_feature complement(58977..59660) FT /note="HMMPfam hit to PF02687, Predicted permease" FT CDS 60291..61265 FT /transl_table=11 FT /locus_tag="BP2352" FT /product="putative periplasmic substrate-binding transport FT protein" FT /note="Similar to Rhizobium meliloti putative FT C4-dicarboxylate transport system, C4-dicarboxylate-binding FT protein precursor signal peptide Smb21438 TR:CAC49667 FT (EMBL:AL603646) (332 aa) fasta scores: E(): 9.2e-37, 36.19% FT id in 315 aa, and to Escherichia coli putative ABC FT transporter periplasmic binding protein YiaO precursor or FT b3579 SW:YIAO_ECOLI (P37676) (328 aa) fasta scores: E(): FT 5.1e-33, 35.43% id in 302 aa" FT /db_xref="GOA:Q7VWA8" FT /db_xref="InterPro:IPR018389" FT /db_xref="UniProtKB/TrEMBL:Q7VWA8" FT /protein_id="CAE42625.1" FT /translation="MRKSWLAAATLAACTVAASLPAAAQTTLKMAYALSTSSHYGAGAE FT AFAKSIEGASGGKYKVQQFANSALGGEREVIEGLQIGTIDLAIVSTGATLNFVPETGVF FT DIPFLLRDLPHARAVLDSKIGQDMLAKFPDRGIIALAWGEQGFRHLTNNVRPVKTPADA FT KGLKIRTTENPIHITAFRQIGILPTPMAWPEVATALQQGIIDGQENPLSVITSAKLSQL FT QKYLSLTGHVYGPALVLMSANVYNGLSDAEKASFKAAGKDSAQAMRAYVDNIEQTGVEQ FT LKKEGMEVSEVDRAAFAAAVEPAYAEYYKKFDKQLIQSIRDTK" FT misc_feature 60291..60362 FT /note="Signal peptide predicted for BP2352 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.994 between residues 24 and 25" FT CDS 61351..61851 FT /transl_table=11 FT /locus_tag="BP2353" FT /product="putative inner membrane transport protein" FT /note="Similar to Bacillus halodurans c4-dicarboxylate FT transport system Bh0702 TR:Q9KEZ7 (EMBL:AP001509) (177 aa) FT fasta scores: E(): 1.8e-08, 29.16% id in 144 aa, and to FT Rhizobium meliloti putative permease protein Bmb20296 FT TR:CAC48686 (EMBL:AL603642) (172 aa) fasta scores: E(): FT 4.4e-07, 27.77% id in 144 aa" FT /db_xref="InterPro:IPR007387" FT /db_xref="UniProtKB/TrEMBL:Q7VWA7" FT /protein_id="CAE42626.1" FT /translation="MRLLCTAERALFRLVSAIAQILLIAAACAAFYQVIARFILHSPAD FT WSEVATRAQLIWTVLLGVALAFRHGAMISVELLRNTLQGAARRLLEHAIALTCIAFLAF FT IAWIGGQMTWRVRFQNVPSLDISISWIYLAIPVGATLTVIAVLARWLAGEQDDVPVRND FT AQG" FT misc_feature join(61387..61455,61513..61581,61615..61683,61726..61794) FT /note="4 probable transmembrane helices predicted for FT BP2353 by TMHMM2.0 at aa 13-35, 55-77, 89-111 and 126-148" FT CDS 61892..63169 FT /transl_table=11 FT /locus_tag="BP2354" FT /product="putative inner membrane protein" FT /note="Similar to Bacillus halodurans C4-dicarboxylate FT transport system Bh2671 TR:Q9K9H6 (EMBL:AP001516) (426 aa) FT fasta scores: E(): 2.1e-63, 43.26% id in 416 aa, and to FT Pseudomonas aeruginosa probable C4-dicarboxylate FT transporter Pa5169 TR:Q9HU16 (EMBL:AE004929) (427 aa) fasta FT scores: E(): 2.8e-59, 42.92% id in 417 aa" FT /db_xref="GOA:Q7VWA6" FT /db_xref="InterPro:IPR004681" FT /db_xref="UniProtKB/TrEMBL:Q7VWA6" FT /protein_id="CAE42627.1" FT /translation="MSQLMILSMLIFFGLSVPVAVAIGIAALTGVSVGGLPWLVVAQQI FT YAALDKYPLVAIPFFILAGNLMEAGGISERMVEFAKSLVGGIQGGLACTCVLTCMIFAA FT VAGSSVATTFAVGAILIPAMVRHGYPAPFAASLQASAAELGVIIPPSIPMILFAVSTDT FT STGELFIAGVMPGVLIGLALMLYVWLYARRNGLGKQDGAGRLPVWQAFKRAWLALLMPV FT IILGGIYGGVFTPTEASVVAVMYAVLIGWLVYRRLSFGLISTTLHRSVISTAVIMFVIA FT NAGVFSFLLNRAGIPDALGVWLSQLFDNHFTFLMGVNAALFVIGMFIETSASVVVLAPL FT LLPVAMKFGVEPVHFGVIMVVNLALGMITPPFGVNLFAACAVAKLPLERLVRPLVPFVG FT VVVACLLVITYWPGLSLGLRDLVYGR" FT misc_feature 61892..61957 FT /note="Signal peptide predicted for BP2354 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.995) with cleavage site FT probability 0.642 between residues 22 and 23" FT misc_feature join(61910..61978,62021..62089,62195..62263,62306..62374, FT 62393..62461,62531..62590,62603..62656,62699..62767, FT 62828..62896,62954..63022,63059..63127) FT /note="11 probable transmembrane helices predicted for FT BP2354 by TMHMM2.0 at aa 7-29, 44-66, 102-124, 139-161, FT 168-190, 214-233, 238-255, 270-292, 313-335, 355-377 and FT 390-412" FT misc_feature 62279..62752 FT /note="HMMPfam hit to PF00597, DedA family" FT repeat_region 63166..63197 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 63166..64218 FT CDS 63268..64218 FT /transl_table=11 FT /locus_tag="BP2355" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7VWA5" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7VWA5" FT /protein_id="CAE42628.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWQRPHQGIGRAVPISRLNLDEYNLLTVHI" FT misc_feature 63526..63591 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 63649..64182 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(64187..64218) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(join(64234..64902,64904..65344)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP2356" FT /product="putative membrane protein (pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 147. The sequence has been checked FT and believed to be correct. Similar to Pseudomonas FT aeruginosa hypothetical protein Pa2789 SWALL:Q9I054 FT (EMBL:AE004706) (359 aa) fasta scores: E(): 7e-47, 41.34% FT id in 358 aa" FT /db_xref="PSEUDO:CAE42629.1" FT variation 64903..64905 FT /note="(C)3 in pertussis; (C)2 in parapertussis and FT bronchiseptica" FT misc_feature complement(join(65132..65197,65261..65326)) FT /note="2 probable transmembrane helices predicted for FT BP2357 by TMHMM2.0 at aa 20-42 and 63-85" FT misc_feature complement(65273..65344) FT /note="Signal peptide predicted for BP2356 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.447 between residues 33 and 34" FT CDS complement(65436..66746) FT /transl_table=11 FT /gene="gltA" FT /gene_synonym="gluT" FT /gene_synonym="icdB" FT /locus_tag="BP2358" FT /product="citrate synthase" FT /EC_number="2.3.3.1" FT /note="Similar to Escherichia coli citrate synthase GltA or FT GluT or IcdB or b0720 SW:CISY_ECOLI (P00891) (427 aa) fasta FT scores: E(): 2.8e-115, 62.67% id in 434 aa, and to FT Rhizobium tropici citrate synthase, chromosomal CcsA FT SW:CISY_RHITR (P51037) (429 aa) fasta scores: E(): FT 6.5e-124, 66.12% id in 434 aa" FT /db_xref="GOA:Q7VWA4" FT /db_xref="HSSP:1K3P" FT /db_xref="InterPro:IPR019810" FT /db_xref="UniProtKB/TrEMBL:Q7VWA4" FT /protein_id="CAE42630.1" FT /translation="MNLSDKKATLSFSDGSAPIEFPVYKGTVGPDVIDIRKLYGQTGMF FT TFDPGFMSTAACASGITYIDGDKGELLYRGYPIEQLAVNCDFLDICYLILNGELPNGGQ FT KQDFDSQVTHHTMVNEQLHFFLRGFRRDAHPMAVLTGLVGALSAFYHDSTDITNPHHRH FT VSAIRLIAKMPTLVAMAYKYSQGQPFIYPQNDLSYTGNFLRMMCATPCEEYKVNDVVER FT ALDRIFILHADHEQNASTSTVRLCGSSGTNPFAAIAAGVACLWGPAHGGANEACLQMLE FT ELQANGGVAKVGEFMEKVKDKNSGVRLMGFGHRVYKNYDPRAKLMQETCKEVLVALGLE FT NDPLFKLAMELERIALEDDYFVQRKLYPNVDFYSGIVQRAIGIPTSLFTAIFALARTVG FT WIAQWNEMLSDPDYKIGRPRQLFTGSVTRDVPGMDKR" FT misc_feature complement(65493..66599) FT /note="HMMPfam hit to PF00285, Citrate synthase" FT misc_feature complement(65781..65819) FT /note="ScanRegExp hit to PS00480, Citrate synthase FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(66767..67027) FT /transl_table=11 FT /locus_tag="BP2359" FT /product="conserved hypothetical protein" FT /note="Similar to many eg. Pseudomonas aeruginosa FT hypothetical protein Pa0760 TR:Q9I5G9 (EMBL:AE004511) (84 FT aa) fasta scores: E(): 5.6e-05, 36.47% id in 85 aa, and to FT Vibrio cholerae hypothetical protein Vc2471 TR:Q9KPA2 FT (EMBL:AE004316) (86 aa) fasta scores: E(): 0.00038, 31.64% FT id in 79 aa" FT /db_xref="InterPro:IPR005631" FT /db_xref="UniProtKB/TrEMBL:Q7VWA3" FT /protein_id="CAE42631.1" FT /translation="MSRLTELQRARLRWRARRGLLENDLIITRYLDACEDQLTDEDVTA FT LTQLFELGDNDLLDLLLARKEPEGALDTPRLRAIIDRMREL" FT CDS complement(67053..67769) FT /transl_table=11 FT /gene="sdhB" FT /locus_tag="BP2360" FT /product="succinate dehydrogenase iron-sulfur protein" FT /EC_number="1.3.99.1" FT /note="Similar to Escherichia coli succinate dehydrogenase FT iron-sulfur protein SdhB or b0724 SW:DHSB_ECOLI (P07014) FT (238 aa) fasta scores: E(): 3.3e-62, 64.25% id in 235 aa, FT and to Rhodoferax fermentans fumarate reductase FT iron-sulpher protein subunit TR:O83002 (EMBL:AB015757) (234 FT aa) fasta scores: E(): 1.7e-75, 80% id in 230 aa" FT /db_xref="GOA:Q7VWA2" FT /db_xref="HSSP:1KF6" FT /db_xref="InterPro:IPR004489" FT /db_xref="UniProtKB/TrEMBL:Q7VWA2" FT /protein_id="CAE42632.1" FT /translation="MSTKRIVKFEIYRYDPDKDERPYMQKLEVELQPTDKMLLDALVRI FT KNDVDDSLALRRSCREGVCGSDAMNINGKNGLACTTNLLELKEPIVLKPLPGLPVIRDL FT IVDMTHFFNQYHSIRPYLINDTPPPEKERLQSPEAREELDGLYECILCACCSTSCPSFW FT WNPDKFVGPAGLLQAYRFIADSRDEATGARLDNLEDPYRLFRCHTIMNCVDVCPKGLNP FT TKAIGKIKELMVRRTV" FT misc_feature complement(67290..67325) FT /note="ScanRegExp hit to PS00198, 4Fe-4S ferredoxins, FT iron-sulfur binding region signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature complement(67515..67712) FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain" FT CDS complement(67782..69560) FT /transl_table=11 FT /gene="sdhA" FT /locus_tag="BP2361" FT /product="succinate dehydrogenase flavoprotein subunit" FT /EC_number="1.3.99.1" FT /note="Similar to Escherichia coli, and succinate FT dehydrogenase flavoprotein subunit SdhA or b0723 or z0877 FT or ecs0748 SW:DHSA_ECOLI (P10444) (588 aa) fasta scores: FT E(): 2.8e-132, 57.92% id in 587 aa, and to Rhodoferax FT fermentans fumarate reductase flavoprotein subunit FT TR:O83001 (EMBL:AB015757) (601 aa) fasta scores: E(): FT 2.1e-153, 69.73% id in 598 aa" FT /db_xref="GOA:Q7VWA1" FT /db_xref="HSSP:1CHU" FT /db_xref="InterPro:IPR011281" FT /db_xref="UniProtKB/TrEMBL:Q7VWA1" FT /protein_id="CAE42633.1" FT /translation="MVAVMNSLPRRQFDVVVVGAGGAGMRCSLQLAQAGLSVAVLSKVF FT PTRSHTVAAQGGVSASLGNMSEDNWYWHMYDTVKGSDWLGDQDAIEFMCREAPNAVYEL FT EHFGMPFDRNADGTIYQRPFGGHTANFGEKPVQRACAAADRTGHALLHTLYQRNVAART FT QFFVEWMALDLLRNEAGDVLGVTALEMETGEIYVLEAKTTVLATGGAGRIWAASTNAFI FT NTGDGLGMAARAGIPLQDMEFWQFHPTGVAGAGVLITEGVRGEGGILLNKDGERFMERY FT APTLKDLAPRDFVSRSMDQEIKEGRGCGPDGSYVVLKLDHLGADVINKRLPSIREIAIK FT FGNVDPIKEPIPVVPTIHYQMGGIPANYHGQVLERANGENKIVNGLYAIGECAAVSVHG FT ANRLGTNSLLDLIVFGRATGNHIVDSHPERQHAHQPLPKEAVDRSLARVDELESRTSGE FT KTQDVANAIRMSMQRHCGVFRTLELLNEGVGQIEDLAQTAQHIYFKDKSKVFNTARVEA FT LELANMTEVARATIKSAANRTESRGAHALNDHPERDDVNWLKHTLWYSEGSRLDYKPVQ FT MKPLTVESFPPKARTF" FT misc_feature complement(68229..69224) FT /note="HMMPfam hit to PF00890, FAD binding domain" FT misc_feature complement(69390..69419) FT /note="ScanRegExp hit to PS00504, Fumarate reductase / FT succinate dehydrogenase FAD-binding site. Confirmed by FT InterPro eMOTIF pattern match." FT CDS complement(69564..69947) FT /transl_table=11 FT /gene="sdhD" FT /locus_tag="BP2362" FT /product="succinate dehydrogenase hydrophobic membrane FT anchor protein" FT /note="Similar to Escherichia coli succinate dehydrogenase FT hydrophobic membrane anchor protein SdhD or b0722 FT SW:DHSD_ECOLI (P10445) (115 aa) fasta scores: E(): 1.2e-08, FT 35.45% id in 110 aa, and to Rhodoferax fermentans fumarate FT reductase cytochrome b small subunit TR:O83000 FT (EMBL:AB015757) (121 aa) fasta scores: E(): 4.3e-17, 43.9% FT id in 123 aa" FT /db_xref="GOA:Q7VWA0" FT /db_xref="InterPro:IPR014312" FT /db_xref="UniProtKB/TrEMBL:Q7VWA0" FT /protein_id="CAE42634.1" FT /translation="MADTKNYGPKRLVVGAHYGVTDFIAQRITAVILAVYTLVLIVGLL FT IMPAFTYENWKALFTFHVFALPVGQILASLAFFALAWHAWIGVRDIWMDYVRPVGVRLL FT LQVLTILWLVGSVVYFAQILWRI" FT misc_feature complement(join(69573..69638,69702..69767,69798..69863)) FT /note="3 probable transmembrane helices predicted for FT BP2362 by TMHMM2.0 at aa 28-50, 60-82 and 103-125" FT CDS complement(69947..70360) FT /transl_table=11 FT /gene="sdhC" FT /gene_synonym="cybA" FT /locus_tag="BP2363" FT /product="succinate dehydrogenase cytochrome B subunit" FT /note="Similar to Escherichia coli, and succinate FT dehydrogenase cytochrome B-556 subunit SdhC or CybA or FT b0721 or z0875 or ecs0746 SW:DHSC_ECOLI (P10446) (129 aa) FT fasta scores: E(): 1.7e-06, 27.27% id in 132 aa, and to FT Rhodoferax fermentans fumarate reductase cytochrome B large FT subunit TR:O82999 (EMBL:AB015757) (147 aa) fasta scores: FT E(): 4e-17, 44.89% id in 147 aa" FT /db_xref="GOA:Q7VW99" FT /db_xref="InterPro:IPR014361" FT /db_xref="UniProtKB/TrEMBL:Q7VW99" FT /protein_id="CAE42635.1" FT /translation="MSDSAAKPRPQFRNISVPQILSYRLPLAGKLSILHRISGALLFLC FT LPLVIVPLFAASVTSPESYAQVAQYAANPLVKLVLLALIWGYLHHFCAGIRYLVLDLHI FT GLDKVSAQKSAGVAFGVSLALTLVFGLKLFGVL" FT misc_feature complement(join(69953..70015,70061..70126,70187..70252)) FT /note="3 probable transmembrane helices predicted for FT BP2363 by TMHMM2.0 at aa 36-58, 78-100 and 115-136" FT misc_feature complement(69977..70324) FT /note="HMMPfam hit to PF01127, Succinate dehydrogenase FT cytochrome b subunit" FT misc_feature complement(70196..70360) FT /note="Signal peptide predicted for BP2363 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.948) with cleavage site FT probability 0.916 between residues 55 and 56" FT CDS complement(70485..71303) FT /transl_table=11 FT /locus_tag="BP2364" FT /product="putative GntR-family transcriptional regulator" FT /note="Similar to Deinococcus radiodurans transcriptional FT regulator, GntR family Dra0211 TR:Q9RYU6 (EMBL:AE001863) FT (279 aa) fasta scores: E(): 2.9e-18, 35.71% id in 238 aa, FT and to Streptomyces coelicolor putative GntR-family FT transcriptional regulator sc7e4.28C TR:Q9K492 FT (EMBL:AL359214) (254 aa) fasta scores: E(): 2.5e-14, 31.44% FT id in 229 aa" FT /db_xref="GOA:Q7VW98" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VW98" FT /protein_id="CAE42636.1" FT /translation="MAAGRIPNTHDSDMAEARPDSLTRSRAAKPAGEGAAFSPLYRQIK FT ELLVQSLDRGEWKPGELIPSEIDLAARFQVSQGTVRKAVDELAAEHLLLRRQGKGTFVA FT THHEARVRYRFLRLAPDEEGEGGRAESRILECRRLRAPAEIARALELRAGETVVTIRRQ FT LSMNHMPTVIDDLWLPGTHFRGLTLELLTASKAPLYGLFESEFGVSMVRADEKLRAVAA FT SPEIAPLLGVEPGRPLLQVDRISYTYGDRPMEVRRGLYLTDHYHYRNSLN" FT misc_feature complement(70995..71174) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT misc_feature complement(71049..71114) FT /note="Predicted helix-turn-helix motif with score 1157 FT (+3.13 SD) at aa 64-85, sequence PSEIDLAARFQVSQGTVRKAVD" FT CDS 71553..72542 FT /transl_table=11 FT /gene="mdH" FT /locus_tag="BP2365" FT /product="malate dehydrogenase" FT /EC_number="1.1.1.37" FT /note="Similar to many both prokaryotic and eukaryotic eg. FT Aquaspirillum arcticum malate dehydrogenase Mdh FT SW:MDH_AQUAR (Q9ZF99) (328 aa) fasta scores: E(): 1.4e-102, FT 78.28% id in 327 aa, and to Streptomyces coelicolor malate FT dehydrogenase Mdh or SC2A6.12 SW:MDH_STRCO (Q9K3J3) (329 FT aa) fasta scores: E(): 3.4e-77, 62.5% id in 328 aa, and to FT Caenorhabditis elegans putative malate dehydrogenase FT f46e10.10 TR:Q9UAV5 (EMBL:AF125955) (336 aa) fasta scores: FT E(): 1.6e-63, 53.13% id in 335 aa" FT /db_xref="GOA:Q7VW97" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/Swiss-Prot:Q7VW97" FT /protein_id="CAE42637.1" FT /translation="MSKPALRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIP FT DEKAQKALKGVIMELEDCAFPLLHEVTAHSDPRTAFKDADVALLVGARPRGPGMERKDL FT LSVNAQIFTAQGRALNDVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLRLDH FT NRALSQLSAKSGKRVADIEKLIVWGNHSPTMYPDFRFATVGGQGLTQLINDDAWNRDTF FT IPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGSNGKWVTMGIPSDGSYGIPEGI FT IYGFPVVTENGEYKMIKDLEIDAFSRERLDFTLKELLEERDGVKDLLK" FT misc_feature 71571..72527 FT /note="HMMPfam hit to PF00056, lactate/malate FT dehydrogenase, NAD binding domain" FT CDS join(72804..73085,73088..73699) FT /pseudo FT /transl_table=11 FT /gene="prpB" FT /locus_tag="BP2366" FT /product="probable methylisocitrate lyase (pseudogene)" FT /EC_number="4.1.3.30" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 106. The frameshift occurs within FT a polymeric tract of (C)4. The sequence has been checked FT and believed to be correct. Similar to Escherichia coli FT probable methylisocitrate lyase PrpB or B0331 FT SWALL:PRPB_ECOLI (SWALL:P77541) (296 aa) fasta scores: E(): FT 2.8e-76, 68.96% id in 290 aa, and to Ralstonia solanacearum FT probable carboxyvinyl-carboxyphosphonate phosphorylmutase FT protein PrpB1 or Rsc2000 or Rs03568 SWALL:CAD15702 FT (EMBL:AL646067) (303 aa) fasta scores: E(): 1.1e-86, 76.84% FT id in 298 aa" FT /db_xref="PSEUDO:CAE42638.1" FT variation 73084..73087 FT /note="(C)4 inpertussis; (C)2 in parapertussis and FT bronchiseptica" FT CDS 73773..74975 FT /transl_table=11 FT /gene="prpC" FT /locus_tag="BP2368" FT /product="2-methylcitrate synthase" FT /EC_number="2.3.3.5" FT /note="Similar to Escherichia coli 2-methylcitrate synthase FT PrpC or b0333 SW:CISZ_ECOLI (P31660) (389 aa) fasta scores: FT E(): 1e-118, 77.8% id in 374 aa, and to Alcaligenes FT eutrophus methylcitrate synthase PrpC TR:AAL03989 FT (EMBL:AF325554) (385 aa) fasta scores: E(): 5e-124, 81.98% FT id in 383 aa" FT /db_xref="GOA:Q7VW96" FT /db_xref="HSSP:1A59" FT /db_xref="InterPro:IPR019810" FT /db_xref="UniProtKB/TrEMBL:Q7VW96" FT /protein_id="CAE42639.1" FT /translation="MSTSQKKPTVQQKKPAAQPAEKAAFKPKKSVALSGVVAGNTALCT FT VGRTGNDLHYRGYDILDFAGSAEFEEIAHLLVHGKLPNKAELKAYKEKLRALRGLPAQL FT QNVLECLPASSHPMDVMRTAVSVLGCVLPEKDDHNTPGARDIADRLMANLGSALLYWYH FT YSHNGRIIDVQTDDDSIGGHFLHLLHGAKPSDEWVRAMHTSLILYAEHEFNASTFTGRV FT IAGTGSDMYSSITGAIGALRGPKHGGANEVAFEVQKRYETPDEAEADIRQRVENKEVII FT GFGHPVYTVSDPRNKVIKDVAKKLSRKAGSTKMFDIAERLETVMWDIKKMFPNLDWFSA FT VSYHMMGVPTAMFTPLFVIARTAGWSAHIIEQRIDNKIIRPTANYVGPEDQTYVPISKR FT A" FT misc_feature 73929..74915 FT /note="HMMPfam hit to PF00285, Citrate synthase" FT misc_feature 74616..74654 FT /note="ScanRegExp hit to PS00480, Citrate synthase FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 74995..77688 FT /transl_table=11 FT /gene="acnA" FT /gene_synonym="acnM" FT /gene_synonym="acn" FT /locus_tag="BP2369" FT /product="aconitate hydratase" FT /EC_number="4.2.1.3" FT /note="Similar to Alcaligenes eutrophus probable FT methyl-cis-aconitic acid hydratase AcnM TR:AAL03990 FT (EMBL:AF325554) (869 aa) fasta scores: E(): 0, 83.96% id in FT 867 aa, and to Escherichia coli aconitate hydratase 1 AcnA FT or Acn or b1276 SW:ACO1_ECOLI (P25516) (890 aa) fasta FT scores: E(): 2.2e-83, 45.16% id in 879 aa" FT /db_xref="GOA:Q7VW95" FT /db_xref="InterPro:IPR015937" FT /db_xref="UniProtKB/TrEMBL:Q7VW95" FT /protein_id="CAE42640.1" FT /translation="MPRRVRHAGPARPARPPQPRFPACLHAHRDTPVMNTKYRKNLPGT FT SLDYFDARQAVEDLQAGAWATLPYTSRVLAENLVRRCDPATLSDSLRQLIERRRDMDFP FT WYPARVVCHDILGQTALVDLAGLRDAIADAGGDPAQINPVVPTQLIVDHSLAVEYPGFD FT KDAFEKNRAVEDRRNEDRFHFINWTKLAFRNVDVIPPGNGIMHQINLEKMSPVVQVRDG FT MAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAENVMLGRASWMRLPDIVGVELTGRPQA FT GITCTDIVLALTEFLRREKVVGAYLEFLGEGASALTIGDRATISNMTPEFGATAAMFYI FT DGQTTDYLTLTGREDSQVKLVETYARQAGLWADDLAGAQYERMLRFDLSSVVRNMAGPS FT NPHKRVATTELAERGIAGPWQETPGQMPDGAVIIAAITSCTNTSNPRNVIAAALLARNA FT NRAGLTRKPWVKSSLAPGSKAVQLYLEEAGLLPDLEKLGFGIVAFACTTCNGMSGALDP FT KIQQEIIERDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVIAYAIAGTVRFDIEKDA FT LGVDAAGKPVTLKDIWPSDAEIDAVVTASVKPEQFRKVYEPMFRFAQEQTGKIDPLYAW FT RPQSTYIRRPPYWEGALAGERTLEGMRPLAVLGDNITTDHLSPSNAIMADSAAGEYLAK FT MGLPEEDFNSYATHRGDHLTAQRATFANPKLINEMAVVDGQVKQGSLARLEPEGKVMRM FT WETIETYMDRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHRTNLIGM FT GVLPLEFQAGVDRKTLGIDGTETFDVVGERVPRATLTLVIHRRDGEQVQVPVICRLDTA FT EEVSIYEAGGVLQRFAQDFLESTQTA" FT misc_feature 75313..76692 FT /note="HMMPfam hit to PF00330, Aconitase family (aconitate FT hydratase)" FT misc_feature 77056..77580 FT /note="HMMPfam hit to PF00694, Aconitase C-terminal domain" FT CDS 77745..78935 FT /transl_table=11 FT /locus_tag="BP2370" FT /product="conserved hypothetical protein" FT /note="Similar to Alcaligenes eutrophus hypothetical 41.5 FT kDa protein TR:AAL03991 (EMBL:AF325554) (396 aa) fasta FT scores: E(): 3.3e-118, 78.28% id in 396 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa0793 FT TR:Q9I5E5 (EMBL:AE004514) (395 aa) fasta scores: E(): FT 1.8e-110, 71.97% id in 396 aa. Also similar to BP0922, FT 35.459% identity (36.968% ungapped) in 392 aa overlap." FT /db_xref="InterPro:IPR007400" FT /db_xref="UniProtKB/TrEMBL:Q7VW94" FT /protein_id="CAE42641.1" FT /translation="MAFLPQLKVRATYMRGGTSKGVFFRLQDLPPAAQVPGPARDALLL FT RVIGSPDPYGKQIDGMGCATSSTSKTVILDRSQRPGHDVDYLFGQVSIDSAFVDWSGNC FT GNLSAAVGAFAIESGLVDPDRVPRNGTAVVRIWQANIGKTILGHIPIVDGQVQESGDFE FT LDGVTFPAAEVQLEFLDPADEGEGEGGAMFPTGNVVDTLEVPGIGTLQATLINAGIPTI FT FVDAQAVGYTGSELQDDINGDAKALAMFETLRAHGALRMGLIADVAEAAKRQHTPKVAF FT VAPPAAYTASSGKQVGAGDIDLRVRALSMGKLHHAMMGTAAVAIGTAAAVPGTLVNLAA FT GGGERESVRFGHPSGTLRVGAQARLEDGQWKVTKAVMSRSARVLMEGHIRVPAETL" FT CDS 78953..80410 FT /transl_table=11 FT /gene="prpD" FT /locus_tag="BP2371" FT /product="2-methylcitrate dehydratase" FT /EC_number="4.2.1.79" FT /note="Similar to Escherichia coli 2-methylcitrate FT dehydratase PrpD or b0334 SW:PRPD_ECOLI (P77243) (483 aa) FT fasta scores: E(): 4e-166, 79.66% id in 477 aa, and to FT Alcaligenes eutrophus PrpD TR:AAL03992 (EMBL:AF325554) (484 FT aa) fasta scores: E(): 1.2e-166, 80.82% id in 485 aa" FT /db_xref="GOA:Q7VW93" FT /db_xref="InterPro:IPR005656" FT /db_xref="UniProtKB/TrEMBL:Q7VW93" FT /protein_id="CAE42642.1" FT /translation="MSHATIPFNQRPAWDSALADIVDYVLDYEVQGKLAYETARNCLID FT TLGCGMEALEYPACRKLLGPVVPGTVVPHGAKVPGTQFQLDPVQAAFNIGAMIRWLDFN FT DTWLAAEWGHPSDNLGGILATADWLSRSAVANGRPPLAMRDVLTAMIKAHEIQGCIALE FT NSFNKVGLDHVVLVKVASTAVVAHLLGLSREEILNAVSLAWVDGQSLRTYRHAPNTGSR FT KSWAAGDATSRAVRLALIARTGEMGYPSALTAPTWGFYDVLFKGQPFRFQRPYGSYVME FT NVLFKISFPAEFHAQTAVECAMEIHALLKARGKSADDIRRITIRTHEACIRIIDKQGPL FT NNPADRDHCIQYMVAVPILYGRLTAADYEDDIARDPRIDALRARIVCVEDPAFTTDYHD FT PTKRSIANALTVEFNDGSRLDEIVCEYPIGHRRRRADGIPLLEAKFRTNLARAFPARQQ FT ERILAASLDQEKLEAMPVNEYVDLYVI" FT CDS 80480..80902 FT /transl_table=11 FT /locus_tag="BP2372" FT /product="putative conserved inner membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0661 TR:Q9I5R0 (EMBL:AE004501) (140 aa) fasta FT scores: E(): 1.2e-26, 49.28% id in 140 aa, and to Neisseria FT meningitidis conserved hypothetical inner membrane protein FT NMA2177 TR:Q9JSR1 (EMBL:AL162758) (145 aa) fasta scores: FT E(): 6.3e-22, 45.2% id in 146 aa" FT /db_xref="InterPro:IPR005265" FT /db_xref="UniProtKB/TrEMBL:Q7VW92" FT /protein_id="CAE42643.1" FT /translation="MLWVKTFHIVFIAAWFAGLFYLPRIYVNLAQQSDPAIQSCLLGMA FT RRLYRFTTLLAIPAIVLGLWLYVGYRIGTGPGNAWMHAKLLFVLLIIGYHHACGVMLRK FT FEQGRNARTHKFYRWFNEIPVVLLLIVVTLVVVKPF" FT misc_feature join(80480..80542,80621..80689,80717..80785,80822..80890) FT /note="4 probable transmembrane helices predicted for FT BP2372 by TMHMM2.0 at aa 15-37, 64-86, 96-118 and 131-153" FT CDS 80932..82323 FT /transl_table=11 FT /locus_tag="BP2373" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis Tou5 TR:Q9RMM0 FT (EMBL:AF194079) (380 aa) fasta scores: E(): 1.2e-58, 43.53% FT id in 379 aa. Also similar to the N-terminal portion of FT others eg. Escherichia coli hypothetical protein YcbY or FT b0948 SW:YCBY_ECOLI (P75864) (702 aa) fasta scores: E(): FT 2.6e-39, 34.36% id in 387 aa. Note possible alternative FT downstream translational start sites." FT /db_xref="GOA:Q7VW91" FT /db_xref="InterPro:IPR004114" FT /db_xref="UniProtKB/TrEMBL:Q7VW91" FT /protein_id="CAE42644.1" FT /translation="MPTDDKARPRKTLTIKKTAPAAPSADDEAPRRKRIGARARLVAQM FT ERAKEQQHAPRRKAPRQDAAHQDDAPRRRPRAPREAEIFPVYAPCPQGIEEALAAEMQA FT LGFEDARAGRAGCAFSTDWAGVQRANLYSRLATRILVQVAQADIGHEDDILDLARSVPW FT ERWFGPDETLRVDTSAIKSPVKSLQYCNLRAKDGICDRLREVEGARPDIDTVRPDARVH FT LFLSGTTATLYLDTSGESLFKRGWRLDKGEAPLRENLAAGMLALAGWDPAEPLLDPFCG FT SGTILIEAAWIALGVPPGISRPFGFERLRNHDARRWQDLKADARTRIQTQLETPLFGYD FT LDPRAIQYAQANAERAWLTADTIRFEVGDARHLAAPADHGWIVTNPPYGERMETEDDSE FT MWRDWAACLKRQFAGWQVHVISSDMTLPQRLRLKPLRRVPLHNGALDCRLFGFELVPAS FT YRKPA" FT misc_feature 81181..82293 FT /note="HMMPfam hit to PF01170, Putative RNA methylase FT family UPF0020" FT misc_feature 81760..81795 FT /note="ScanRegExp hit to PS01261, Uncharacterized protein FT family UPF0020 signature. Confirmed by InterPro eMOTIF FT pattern match." FT misc_feature 82075..82095 FT /note="ScanRegExp hit to PS00092, N-6 Adenine-specific DNA FT methylases signature." FT CDS 82522..82719 FT /transl_table=11 FT /locus_tag="BP2374" FT /product="hypothetical protein" FT /note="No significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VW90" FT /protein_id="CAE42645.1" FT /translation="MEPTAMNPNTFRLTDELERQLMLQAMEDQFRPRPMRALAAGLRKL FT ADGIKSVAGKSGSKAAHSAA" FT CDS join(82852..83352,83355..83381) FT /pseudo FT /transl_table=11 FT /locus_tag="BP2375" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 167. The frameshift occurs within FT a polymeric tract of (C)6. The sequence has been checked FT and believed to be correct. Similar to Neisseria FT meningitidis putative membrane protein NMA0915 TR:Q9JVB1 FT (EMBL:AL162754) (170 aa) fasta scores: E(): 2.3e-07, 33.92% FT id in 168 aa, and to Neisseria meningitidis hypothetical FT protein Nmb0710 SWALL:Q9K0A5 (EMBL:AE002425) (188 aa) fasta FT scores: E(): 2.5e-07, 32.33% id in 167 aa" FT /db_xref="PSEUDO:CAE42646.1" FT variation 83345..83350 FT /note="(C)6 in pertussis; (C)7 in parapertussis and FT bronchiseptica" FT CDS 83447..84319 FT /transl_table=11 FT /locus_tag="BP2376" FT /product="conserved hypothetical protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc3344 TR:Q9A362 (EMBL:AE005996) (281 aa) fasta FT scores: E(): 3.3e-64, 58.98% id in 256 aa, and to Rhizobium FT loti Mll0806 protein Mll0806 TR:Q98LZ6 (EMBL:AP002995) (260 FT aa) fasta scores: E(): 1.6e-56, 52.84% id in 246 aa" FT /db_xref="GOA:Q7VW89" FT /db_xref="InterPro:IPR004843" FT /db_xref="UniProtKB/TrEMBL:Q7VW89" FT /protein_id="CAE42647.1" FT /translation="MTARMEATVTEIHPTHWRTLWISDIHLGTAGCKAEFLLDFLDHND FT SDTLYLVGDIVDGWQLRKHWHWPRAHNDVVQRILRKARNGTRVVFVPGNHDEFAREFAG FT FAFGDIEILDEDVHVTAQGVKLLVLHGDQFDGVIQHSKWLAHLGDSLYQTALWLNHHFN FT RLRHRLGLHYWSLSQYLKHKVKNAVAFITDFEEALAGEARRRGLDGVVCGHIHQPALRQ FT VDGILYCNDGDWVESLSALGETHEGQLQLLDWAACMAERGNDPAAARPRRSLSLPALPS FT ALRRQGRHP" FT misc_feature 83924..83989 FT /note="Predicted helix-turn-helix motif with score 1171 FT (+3.18 SD) at aa 160-181, sequence HHFNRLRHRLGLHYWSLSQYLK" FT CDS 84430..86121 FT /transl_table=11 FT /locus_tag="BP2377" FT /product="putative AMP-binding protein" FT /note="Similar to many predicted fatty-acid-CoA ligases eg. FT Rhizobium meliloti putative fatty-acid-CoA ligase protein FT Smc00741 TR:CAC47210 (EMBL:AL591791) (548 aa) fasta scores: FT E(): 2.7e-92, 45.38% id in 553 aa" FT /db_xref="GOA:Q7VW88" FT /db_xref="InterPro:IPR000873" FT /db_xref="UniProtKB/TrEMBL:Q7VW88" FT /protein_id="CAE42648.1" FT /translation="MPPSSDHRAMNDQYEALYQTFRWLVPTQFNIADACCHRWAASSPD FT ARRIAIYYEDEAGNREVWTYARLAEAANQLANGLVKMGVERGDRVGVVLGQRPETVVAH FT MAIYSVGAVVLPLSPLFGPEALESRLRDADARVAIVDYASSANLLAISDNCPNLHQIIG FT IGFADERVLPWRSLLARQPNEFKMVATRASDPAILMYTSGTTGAPKGALLPHSVLIGNL FT PGFVASQDWFPRPGDVFWSPADWAWTGGMMDALLPTLYFGHPIVGTRGRFTPERAFELM FT ERYQVTNTFLFPTALKMMMKSVPEPRGRYQLALRSIMSAGESVGETVFEWCEQALGITP FT NEMFGQTELNYVVGNSNRRWPARPGSMGRPYPGHRVAVIDEAGRPVKPGETGEVALNRF FT DIHGFPDPVLFLGYWRNEAATAAKFTDDWCRTGDLASIDADGYLWYAGRADDVFKSAGY FT RIGPGEIENCLLGHPAVANAAVVPKPDAERGALVKAYVVLTPEYQGRDPDSITQVLQEH FT VRDRLAPYEYPKEIEYVDALPMTTTGKIQRAVLRRREAERASGAHS" FT misc_feature 84619..85869 FT /note="HMMPfam hit to PF00501, AMP-binding enzyme" FT misc_feature 85021..85056 FT /note="ScanRegExp hit to PS00455, Putative AMP-binding FT domain signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 86133..86654 FT /transl_table=11 FT /locus_tag="BP2378" FT /product="putative transferase" FT /note="Similar to Caulobacter crescentus bacterial FT transferase family protein cc2643 TR:Q9A526 (EMBL:AE005932) FT (176 aa) fasta scores: E(): 2.7e-29, 49.71% id in 173 aa, FT and to Escherichia coli phenylacetic acid degradation FT protein PaaY or b1400 SW:PAAY_ECOLI (P77181) (196 aa) fasta FT scores: E(): 3.6e-19, 41.35% id in 162 aa" FT /db_xref="GOA:Q7VW87" FT /db_xref="InterPro:IPR001451" FT /db_xref="UniProtKB/TrEMBL:Q7VW87" FT /protein_id="CAE42649.1" FT /translation="MPIYQLDDLIPAIDPSAYLADSADIIGNVTLEAGVSIWSQVSIRG FT DNAPILVRSGTNIQEASVLHVDAGCPMTVGPNVTIGHQAMLHGCTIHEGALVGMQAIVL FT NNAVIGRNCLIGAGAIIPEGRIIPDNSLVIGIGKIVRELSAEEIAEMQANNRHYVERGQ FT HYKTALKRIG" FT misc_feature 86214..86267 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 86394..86447 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 86448..86501 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT CDS 86704..87618 FT /transl_table=11 FT /locus_tag="BP2379" FT /product="putative chaperonin" FT /note="Similar to Escherichia coli, and 33 kDa chaperonin FT HslO or b3401 or z4755 or ecs4243 SW:HSLO_ECOLI (P45803) FT (292 aa) fasta scores: E(): 1.1e-18, 36.66% id in 300 aa, FT and to Pseudomonas aeruginosa 33 kDa chaperonin HslO or FT pa5193 SW:HSLO_PSEAE (Q9HTZ6) (297 aa) fasta scores: E(): FT 1.3e-38, 42.61% id in 291 aa" FT /db_xref="GOA:Q7VW86" FT /db_xref="HSSP:1HW7" FT /db_xref="InterPro:IPR016154" FT /db_xref="UniProtKB/TrEMBL:Q7VW86" FT /protein_id="CAE42650.1" FT /translation="MTDLLKKYLFEDRSVRIQAVRLHETWLQAQVNHQHPPAVTRLLGE FT LVAASTLLAANIKFDGSLVLQIQGDGPLALLVVECRSDLSLRATVKVREGQSIPDNGTM FT QSLLNANGNGRFMVVLDPQRKVPGQQAYQGIVPLEGETVAEALGHYMKASEQLDTQLWL FT AADEQHAAGLLVQRLPDHGGTTQGDAAESWSRATHLAATLQPAELLATDTDTLIHRLYW FT EEPLMAFEPHAVRWFCPCTRERVSSMLRSLGQAEVESILAEQGRVEVSCDFCGKPYEFD FT KVDCAGLFAPNSPMPEQDPPTVH" FT misc_feature 86710..87567 FT /note="HMMPfam hit to PF01430, Hsp33 protein" FT CDS 87695..88447 FT /transl_table=11 FT /locus_tag="BP2380" FT /product="putative periplasmic protein" FT /note="No significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VW85" FT /protein_id="CAE42651.1" FT /translation="MEHAAAVPPPRHAGTAALEFMLAGMLLLAASIATVETMYWHQMRH FT LAYLALIEAARAGATSHGEPGAIARAFARAMRARHAAGQPGQAATRQQHAWNRQQARTG FT LPAWRIAILQPGPTAFANHGVANRGLRRPPRIRNDYQAEQHAQRLAQGWPGGAGPRSGL FT DIFQANTLRLRLVYRLAPLSPWLGALLRASAALAQACARPAWRQGLLPIRLELEMDMQS FT DPALWPARPDVSYGDARDCDGLTAAASG" FT misc_feature 87731..87799 FT /note="1 probable transmembrane helix predicted for BP2380 FT by TMHMM2.0 at aa 13-35" FT CDS complement(88425..88826) FT /transl_table=11 FT /locus_tag="BP2381" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti Mlr0979 protein TR:Q98LL3 FT (EMBL:AP002996) (138 aa) fasta scores: E(): 1.7e-09, 36.15% FT id in 130 aa, and to Agrobacterium tumefaciens strC58 FT Agr_l_1124p TR:AAK89137 (EMBL:AE008254) (137 aa) fasta FT scores: E(): 2.2e-09, 39.23% id in 130 aa" FT /db_xref="InterPro:IPR014710" FT /db_xref="UniProtKB/TrEMBL:Q7VW84" FT /protein_id="CAE42652.1" FT /translation="MSRFPMLCLALCLATGTAAAGEGPPQPSVTPLMTQPLQDYPGKEV FT AVIVVDYPPGGADPVHRHNAHGFVYVLQGSIVMGVRGGQPVTLGPGQTFHEGPDDVHTI FT GRNASAAEPARFLVFLLKNRGEAILTPQR" FT misc_feature complement(88767..88826) FT /note="Signal peptide predicted for BP2381 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.942 between residues 20 and 21" FT CDS complement(88851..89330) FT /transl_table=11 FT /locus_tag="BP2382" FT /product="conserved hypothetical protein" FT /note="Similar to many eg. Rhizobium loti Mll1641 protein FT TR:Q98K47 (EMBL:AP002997) (152 aa) fasta scores: E(): FT 4.1e-24, 46.89% id in 145 aa, and to Streptomyces FT coelicolor hypothetical 17.3 kDa protein SCC57A.14 FT TR:Q9RDI4 (EMBL:AL136519) (161 aa) fasta scores: E(): FT 3.5e-19, 46.66% id in 135 aa. Streptomyces coelicolor FT appears to contain many paralogues of this protein. Also FT similar to BP1190, 42.553% identity (42.553% ungapped) in FT 141 aa overlap." FT /db_xref="InterPro:IPR003779" FT /db_xref="UniProtKB/TrEMBL:Q7VW83" FT /protein_id="CAE42653.1" FT /translation="MTQRLDYQQQSPELFKKFVAFSLALKQSSIETSIRDLVDIRASQI FT NGCTFCLDMHVKEATMHGERPLRLHHIAAWRESTLFSPRERAALAWTEVLTRIPAEGIS FT DEIHAQVREQLSEQELSDLTFLVMSINAWNRVNVAFRIEPGKYDQAFGVDKSGLS" FT CDS complement(89380..90135) FT /transl_table=11 FT /locus_tag="BP2383" FT /product="conserved hypothetical protein" FT /note="Similar to many eg. Rhizobium meliloti hypothetical FT protein Smb20701 TR:CAC49808 (EMBL:AL603647) (250 aa) fasta FT scores: E(): 1e-59, 68.67% id in 249 aa, and to FT Streptomyces coelicolor conserved hypothetical protein FT SC4B10.09C TR:Q9FC78 (EMBL:AL391515) (248 aa) fasta scores: FT E(): 6.5e-54, 63% id in 246 aa. Streptomyces coelicolor FT appears to contain many paralogues of this protein." FT /db_xref="GOA:Q7VW82" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VW82" FT /protein_id="CAE42654.1" FT /translation="MKIVVIGGTGLIGSNVVNRLRRDGHETVAASPGTGVNTITGEGLA FT QALDGAQVVVDVANSPSFEDQAVMAFFETSGRTLLAAEAAAGVTHHLALSVVGTDRLAD FT SGYFRAKVAQEALIKASKVPYTILRATQFFEFIESIVNAGADGDTVRLSPALIQPIAAD FT DVSAALADLAVGMPLNGTVEVAGPDRLPLDELARKFLAARGDRRQVVADVHARYFGSEL FT DDRSLVAGDNPRVGSTRLMNWLSRSPAPQ" FT CDS 90334..91899 FT /transl_table=11 FT /locus_tag="BP2384" FT /product="putative transcriptional regulator" FT /note="Similar to many from Rhizobium spp., one of which FT (SW:CYA3_RHIME) lies alongside an adenylate cyclase. It FT seems possible that many of the Rhizobium spp. proteins FT have mistakenly been predicted to be adenylate cyclases FT rather than transcriptional regulators. Similar to FT Rhizobium meliloti putative regulatory protein, possibly FT two-component response regulator smb20702 TR:CAC49809 FT (EMBL:AL603647) (554 aa) fasta scores: E(): 4.9e-103, FT 62.43% id in 567 aa and to Rhizobium meliloti putative FT adenylate cyclase 3 Cya3 or sma1583 SW:CYA3_RHIME (Q9Z3Q0) FT (586 aa) fasta scores: E(): 5.1e-38, 35.52% id in 442 aa." FT /db_xref="GOA:Q7VW81" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VW81" FT /protein_id="CAE42655.1" FT /translation="MRLAFDDCLLDLDRRELTRASRAVATAPQVFDLLAYLLANRERVV FT DRDELIQAVWNGRIVSESTLASHINAVRTAVGDSGQRQAVVRTVPRKGFRFVAEVRTDA FT PAPAGMARTPAPPATAPALPAKPSIAVLPFVNLSADPEQDYLADGVVEDIIAALSQYRW FT LFVVARNSSFTYKGRAVNVRQVGRELGVRYVLEGSWRKERNRVRITGQLIDAASGAHHW FT ADRYEGVLDDIFALQDQITENVVGAIAPQLERAEIERARRKPTDSLDAYDYYLRGMACA FT HQGTRQAAEQALPLFHRAIACDPEFAPAYAMAAWCHCWRKVNGWMQDKPREMAEGARLA FT RRAVELDRIDAVALTRSGHALGHLAGDLQGGIALLDRALVLNPNLAAAWFLSAFLRLWH FT GETAQAVTHFTHAMRLSPLDPELYRMQAGMGVAHLFLGHHDAATAWAEQALRELPSFLM FT TVAIAAAGHALAGHGAQARRAMDQLRRLDPALRLAGLSEWLPIRKGENLAILAQGLRLA FT GLPE" FT misc_feature 90424..90612 FT /note="HMMPfam hit to PF00486, Transcriptional regulatory FT protein, C terminal" FT misc_feature 91141..91251 FT /note="HMMPfam hit to PF00515, TPR Domain" FT misc_feature 91384..91488 FT /note="HMMPfam hit to PF00515, TPR Domain" FT misc_feature 91489..91590 FT /note="HMMPfam hit to PF00515, TPR Domain" FT misc_feature 91600..91701 FT /note="HMMPfam hit to PF00515, TPR Domain" FT CDS complement(91967..92323) FT /transl_table=11 FT /locus_tag="BP2385" FT /product="putative conserved inner membrane protein" FT /note="Similar to Xylella fastidiosa hypothetical protein FT Xf1292 TR:Q9PDT7 (EMBL:AE003962) (118 aa) fasta scores: FT E(): 9.4e-12, 45.45% id in 110 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa3634 TR:Q9HXZ6 FT (EMBL:AE004783) (94 aa) fasta scores: E(): 1.1e-08, 48.81% FT id in 84 aa" FT /db_xref="GOA:Q7VW80" FT /db_xref="InterPro:IPR007060" FT /db_xref="UniProtKB/Swiss-Prot:Q7VW80" FT /protein_id="CAE42656.1" FT /translation="MRLLFLVLLVLLGLIQYPLWLGKGGWFKVWDLQRQVAEQRETNDG FT LRARNTALEAEVRDLATGVGAVEERARSELGMMREGEVFVHILPPGTPLPSDNSTPQAS FT ALSKPRPPATPPRR" FT misc_feature complement(92243..92308) FT /note="1 probable transmembrane helix predicted for BP2385 FT by TMHMM2.0 at aa 5-27" FT CDS complement(92405..93691) FT /transl_table=11 FT /gene="eno" FT /locus_tag="BP2386" FT /product="enolase" FT /EC_number="4.2.1.11" FT /note="Similar to many eg. Escherichia coli enolase Eno or FT b2779 or z4094 or ecs3639 SW:ENO_ECOLI (P08324) (431 aa) FT fasta scores: E(): 3.3e-99, 62.88% id in 423 aa, and to FT Nitrosomonas europaea Enolase Eno SW:ENO_NITEU (O85348) FT (428 aa) fasta scores: E(): 2.9e-114, 70.09% id in 428 aa" FT /db_xref="GOA:Q7VW79" FT /db_xref="HSSP:1E9I" FT /db_xref="InterPro:IPR000941" FT /db_xref="UniProtKB/Swiss-Prot:Q7VW79" FT /protein_id="CAE42657.1" FT /translation="MSAIVDIIGREILDSRGNPTVECDVLLESGAMGRASVPSGASTGS FT REAIELRDGDKGRYLGKGVLRAVENLNTEISEALMGLDAQEQTFVDRTLIELDGTDSKE FT RLGANAMLAASMAVARAAADESGLSLYRYFGGSGPMSMPVPMMNVINGGAHANNTLDLQ FT ELMILPVGAASFREALRWGAEVFHMLKKLIHDQGMSTAVGDEGGFAPNVASHEAAIQLI FT LKAITEAGYEPGTQIALGLDCASSEFYRDGKYTLAGEGGVSLSSQEFANLLATWCDKYP FT IISIEDGMAENDWDGWKLLTDQLGKKVQLVGDDLFVTNTRILREGIQKGVANSILIKIN FT QIGTLTETFAAIEMAKRAGYTAVVSHRSGETEDSTIADIAVATNAMQIKTGSLSRSDRM FT AKYNQLLRIEEELAEVASYPGLEAFYNLR" FT misc_feature complement(92411..93688) FT /note="HMMPfam hit to PF00113, Enol-ase" FT misc_feature complement(92648..92689) FT /note="ScanRegExp hit to PS00164, Enolase signature. FT Confirmed by InterPro eMOTIF pattern match." FT CDS complement(93697..93981) FT /transl_table=11 FT /locus_tag="BP2387" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Smc00411 TR:CAC41768 (EMBL:AL591783) (95 aa) fasta scores: FT E(): 8.3e-08, 38.46% id in 91 aa, and to Agrobacterium FT tumefaciens strC58 Agr_c_513p TR:AAK86112 (EMBL:AE007968) FT (95 aa) fasta scores: E(): 2.2e-07, 38.46% id in 91 aa" FT /db_xref="InterPro:IPR010753" FT /db_xref="UniProtKB/TrEMBL:Q7VW78" FT /protein_id="CAE42658.1" FT /translation="MSAYLIADVSVTKPAQYEDYKRLSTLAMRAYDAKVLVRGGESRHL FT EGREPGRTVIMEFPSVDKAQAFYDSYQYRRARNAREGAAIMNMFIVQGM" FT CDS complement(93991..94848) FT /transl_table=11 FT /gene="kdsA" FT /locus_tag="BP2388" FT /product="2-dehydro-3-deoxyphosphooctonate aldolase" FT /EC_number="2.5.1.55" FT /note="Similar to many eg. Escherichia coli FT 2-dehydro-3-deoxyphosphooctonate aldolase KdsA or b1215 FT SW:KDSA_ECOLI (P17579) (284 aa) fasta scores: E(): 1.6e-45, FT 44.87% id in 283 aa, and to Xylella fastidiosa FT 2-dehydro-3-deoxyphosphooctonate aldolase xf1289 TR:Q9PDU0 FT (EMBL:AE003962) (295 aa) fasta scores: E(): 3.1e-76, 71.27% FT id in 282 aa, and to Pisum sativum FT 2-dehydro-3-deoxyphosphooctonate aldolase KdsA SW:KDSA_PEA FT (O50044) (290 aa) fasta scores: E(): 2e-53, 54.85% id in FT 268 aa" FT /db_xref="GOA:Q7VW77" FT /db_xref="InterPro:IPR006269" FT /db_xref="UniProtKB/Swiss-Prot:Q7VW77" FT /protein_id="CAE42659.1" FT /translation="MMKACGFDIGLDHPFFLIAGPCVIESRELAFETAGRLKEITGKLG FT VPFIYKSSFDKANRSSGKSFRGPGMDEGLKILADVRAQLDVPVLTDVHDIDQVAPVAAV FT VDMLQTPAFLCRQTDFIRACAATLKPVNIKKGQFLAPHDMLQVARKARDAALEAGGDGN FT NILVCERGASFGYNNLVSDMRSLAIMRETDCPVVFDATHSVQLPGGQGASSGGQREFVP FT VLARAAVAVGVAGLFMETHPNPACAMSDGPNAVPLDRMAELLESLVALDRVTKRSGFLE FT NQFV" FT misc_feature complement(94657..94680) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(94845..96497) FT /transl_table=11 FT /gene="pyrG" FT /locus_tag="BP2389" FT /product="CTP synthase" FT /EC_number="6.3.4.2" FT /note="Similar to Escherichia coli, and CTP synthase PyrG FT or b2780 or z4095 or ecs3640 SW:PYRG_ECOLI (P08398) (544 FT aa) fasta scores: E(): 1.4e-136, 63.32% id in 548 aa, and FT to Neisseria meningitidis CTP synthase PyrG or NMA1742 FT TR:Q9JTK1 (EMBL:AL162757) (544 aa) fasta scores: E(): FT 3.3e-139, 65.81% id in 547 aa" FT /db_xref="GOA:Q7VW76" FT /db_xref="InterPro:IPR000991" FT /db_xref="UniProtKB/Swiss-Prot:Q7VW76" FT /protein_id="CAE42660.1" FT /translation="MTKYVFVTGGVVSSLGKGIAAASLAAILESRGLQVTLLKLDPYIN FT VDPGTMSPFQHGEVFVTEDGAETDLDLGHYERFISARMRKVNNFTTGQIYESVLRKERR FT GDYLGKTVQVIPHITNEIQDFVARGAEAAWNGATDVAIVEIGGTVGDIESLPFLEAARQ FT MSLRMGRNNAAFVHLTLVPYIASAGELKTKPTQHSVQKLREIGIYPNVLLCRADRRIPD FT DERAKISMFSNVPLDAVISVWDVDSIYKIPAMLHKQGVDNIVCEALGLTPPPADLSMWD FT NLVDALEHPQDSVTIGMVGKYVDLTESYKSLSEALVHAGIHTRSKVNIEYIDSEDIETR FT GTDQLKHLDAILVPGGFGKRGTEGKIAAIRYARENGVPYLGICLGMQLAVIEFARHVAG FT LGGANSTEFDPAAPHPVVALITEWMDREGRVERRDNSSDLGGTMRKGAQRCPIRPGTRA FT QSIYGDDVNERHRHRYEVNNVYVPRLEDAGMVISARTPTENLPEMMELPSHPWFVGVQF FT HPEFTSTPRDGHPLFSSYIRAALEHKAQRAKEA" FT misc_feature complement(94884..95588) FT /note="HMMPfam hit to PF00117, Glutamine amidotransferase FT class-I" FT misc_feature complement(95331..95366) FT /note="ScanRegExp hit to PS00442, Glutamine FT amidotransferases class-I active site. Confirmed by FT InterPro eMOTIF pattern match." FT CDS complement(96579..97529) FT /transl_table=11 FT /locus_tag="BP2390" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7VW75" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7VW75" FT /protein_id="CAE42661.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWGFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT repeat_region 96579..96610 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(96579..97631) FT misc_feature complement(96615..97148) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(97206..97271) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(97600..97631) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(97762..99561) FT /transl_table=11 FT /locus_tag="BP2391" FT /product="putative aminopeptidase" FT /note="Similar to many (pro- and eukaryotic) eg. Neisseria FT meningitidis aminopeptidase, putative nmb1428 TR:Q9JYU4 FT (EMBL:AE002492) (598 aa) fasta scores: E(): 4.4e-121, FT 53.83% id in 600 aa, and to Homo sapiens cytosolic FT aminopeptidase P TR:Q9NQW7 (EMBL:AF272981) (623 aa) fasta FT scores: E(): 1.6e-37, 38.71% id in 620 aa, and to Mus FT musculus cytosolic aminopeptidase P TR:AAK48945 FT (EMBL:AF363970) (623 aa) fasta scores: E(): 4.7e-37, 38.54% FT id in 620 aa" FT /db_xref="GOA:Q7VW74" FT /db_xref="InterPro:IPR000587" FT /db_xref="UniProtKB/TrEMBL:Q7VW74" FT /protein_id="CAE42662.1" FT /translation="MSVTDNRIGALRRAMRQHQLDAYIVPSADPHLSEYLPGRWQGRRW FT LSGFTGSVGTLVVTRDFAGLWVDSRYWVQAENQLAGTGVTLMKIAQASTPGHVDWLAAR FT LPAGSRVGVDGQVLGLAAFRALSAALAPAGIHLDILSDLLQAIWPDRPGLPSAPVYELP FT APHACEPRADKLARVRAAMRAQGADAHWLSTLDDIAWLFNLRGSDVEYNPVFLAHALVG FT PDHATLFVADGKIDAALRQALAADGVETADYGLAAEALGSLHTDQTLLIDPARVTCGVF FT HAMDPAVPRIEAINPSTLYKSRKSDAELASVRAAMEQDGAALCEFFAWFEGAVGREPVS FT ELTIDERITAARSRRPGYVCPSFATIAGFNANGAMPHYRATPQAHAAIEGDGLLLIDSG FT GQYLGGTTDITRVVAVGAPSADQKVDFTLVLKGMIALSRASFPRGTPSPMLDAIARAPI FT WAGGAEYGHGTGHGVGYLLNVHEGPQVISYRAAPGPHTAMEPGMITSNEPGIYRPGRWG FT VRIENLVANRTWLEGELGEFLCFETLTLCPIDTRCIDATLLRADEIAWLDDYHRTVRER FT LAPWVEGAALQWLQARTRPLGAD" FT misc_feature complement(97921..98658) FT /note="HMMPfam hit to PF00557, metallopeptidase family M24" FT CDS complement(join(99570..100142,100144..100374)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP2392" FT /product="putative transport protein (pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 77. The sequence has been checked FT and believed to be correct. Similar to Deinococcus FT radiodurans peptide ABC transporter, putative dr1843 FT TR:Q9RTC2 (EMBL:AE002024) (283 aa) fasta scores: E(): FT 9.1e-28, 45.13% id in 257 aa, and to Bacillus subtilis FT dipeptide transport protein DppA or dciaA SW:DPPA_BACSU FT (P26902) (274 aa) fasta scores: E(): 9.3e-18, 31.73% id in FT 271 aa" FT /db_xref="PSEUDO:CAE42663.1" FT variation complement(100143) FT /note="8 bp deletion in pertussis relative to parapertussis FT and bronchiseptica" FT CDS complement(100401..101549) FT /transl_table=11 FT /locus_tag="BP2393" FT /product="probable D-aminopeptidase" FT /note="Similar to predicted (no evidence) aminopeptidases FT eg. Rhizobium meliloti putative D-aminopeptidase sma0095 FT TR:AAK64706 (EMBL:AE007199) (345 aa) fasta scores: E(): FT 4.3e-51, 48.29% id in 352 aa, and to Ochrobactrum anthropi FT D-aminopeptidase DmpA TR:Q59632 (EMBL:X97669) (375 aa) FT fasta scores: E(): 9.9e-34, 37.7% id in 358 aa" FT /db_xref="GOA:Q7VW73" FT /db_xref="HSSP:1B65" FT /db_xref="InterPro:IPR005321" FT /db_xref="UniProtKB/TrEMBL:Q7VW73" FT /protein_id="CAE42664.1" FT /translation="MQAPRRSGRPRGGPVISRAVATRTNAMEQLDLPRIGMLPAGELDS FT IGDVPGVTVGHFTLAQGARQTGVTVVRPHEGDPFRNKVPAAATVLNGFGKSCGLIQVEE FT LGVLETPIALTNTFAVGAVANAQIRQAIAANPEIGRAWPTVNPLVFECNDGYLNDIQAQ FT AVAEAHYEQAWRGAASVFEQGSVGAGRGMSSFGFKGGIGSASRLAEAYPGQRYTVGALV FT LSNFGQRSSMTIAGRPFGRRLAAAARDGEPAGQPEKGSIILLLATDAPLDSRQLRRLSL FT RAGAGLARTGSVFGHGSGDIALAFSTAYTIPHLAERGMPVQVMLHETRIDALFEAAAEA FT VEQAIVAALWRAETVAGRDGHVRRAIREAAPQWRQWLAETAF" FT CDS complement(101567..102466) FT /transl_table=11 FT /locus_tag="BP2394" FT /product="putative binding-protein-dependent transport FT permease" FT /note="Similar to Escherichia coli hypothetical ABC FT transporter permease protein YliD or b0832 SW:YLID_ECOLI FT (P75799) (303 aa) fasta scores: E(): 1.4e-80, 71.88% id in FT 281 aa, and to Bacillus firmus dipeptide transport system FT permease protein DppC SW:DPPC_BACFI (P94312) (304 aa) fasta FT scores: E(): 1.6e-45, 45.12% id in 277 aa" FT /db_xref="GOA:Q7VW72" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7VW72" FT /protein_id="CAE42665.1" FT /translation="MSHTNTAAVAAQAAKEDVRTPASEFWRKFKKQKLAVGAGLFVLLL FT ALIAILAPWIVPFDPENFFDYDALNAGPSATHWLGVDSLGRDIFSRIVMGARISLAAGF FT LSVAMGAVVGTFMGLMAGYYQGWWERITMRISDVLLAFPGMLLAIGVVAILGSSMVNVI FT VAVAVFSVPAFARLVRGNTLAIKQMTYVEAVRSVGASDWTIIMRHILPGTISPIVVYGT FT MRIATSIITAASLSFLGMGAQPPTPEWGAMLSEARADMVIAPHVAIFPALAIFFTVLAF FT NLLGDGLRDALDPRIDRK" FT misc_feature complement(join(101615..101680,101741..101806, FT 101933..101989,102002..102052,102089..102154, FT 102299..102364)) FT /note="6 probable transmembrane helices predicted for FT BP2394 by TMHMM2.0 at aa 34-56, 104-126, 138-155, 159-178, FT 220-242 and 262-284" FT misc_feature complement(101693..101923) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT CDS complement(102474..103394) FT /transl_table=11 FT /locus_tag="BP2395" FT /product="putative binding-protein-dependent transport FT permease" FT /note="Similar to Escherichia coli hypothetical ABC FT transporter permease protein YliC or b0831 SW:YLIC_ECOLI FT (P75798) (306 aa) fasta scores: E(): 9.4e-92, 76.47% id in FT 306 aa, and to Bacillus subtilis dipeptide transport system FT permease protein DppB or dciaB SW:DPPB_BACSU (P26903) (308 FT aa) fasta scores: E(): 9.5e-39, 37.25% id in 306 aa" FT /db_xref="GOA:Q7VW71" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7VW71" FT /protein_id="CAE42666.1" FT /translation="MLTYIVKRLLGMIPTLLLVAVVVFLFVHMLPGDPARLAAGQEADQ FT ETVELVRQELGLDLPLPQQFVRYFGHMLQGDLGTSLRTKRPVSTEIADRFMPTLWLTLA FT SMIWSVVFGMAIGVVSAVWRNRWPDRLGMTLAVSGISFPAFALGMMLMQVFSVNLGWLP FT TVGASSWKHYILPSLTLGAAVAAVMARFTRASFVEVIQEDFVRTARAKGLSERVVVTKH FT ALRNALIPVVTMMGLQFGFLLGGSIVVETVFNWPGLGRLLVDAVTQRDYPVIQGLVLLF FT SLEFILINLIVDVLYGVINPSIRYK" FT misc_feature complement(join(102498..102563,102648..102713, FT 102822..102878,102924..102989,103029..103094, FT 103302..103367)) FT /note="6 probable transmembrane helices predicted for FT BP2395 by TMHMM2.0 at aa 9-31, 100-122, 135-157, 172-191, FT 227-249 and 277-299" FT misc_feature complement(102594..102809) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature complement(102720..102806) FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature complement(103281..103394) FT /note="Signal peptide predicted for BP2395 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.960) with cleavage site FT probability 0.324 between residues 38 and 39" FT CDS complement(103456..105009) FT /transl_table=11 FT /locus_tag="BP2396" FT /product="putative binding-protein-dependent transport FT periplasmic protein" FT /note="Similar to Escherichia coli putative binding protein FT YliB precursor or b0830 SW:YLIB_ECOLI (P75797) (512 aa) FT fasta scores: E(): 1.3e-117, 57.17% id in 516 aa, and to FT Escherichia coli periplasmic dipeptide transport protein FT precursor DppA or b3544 SW:DPPA_ECOLI (P23847) (535 aa) FT fasta scores: E(): 2e-32, 30.54% id in 537 aa" FT /db_xref="GOA:Q7VW70" FT /db_xref="HSSP:1UQW" FT /db_xref="InterPro:IPR000914" FT /db_xref="UniProtKB/TrEMBL:Q7VW70" FT /protein_id="CAE42667.1" FT /translation="MMKVLHPTKLVAAATLAFSVLASPLAHASKDVTFAVAIALETLDP FT YNTNSTLNQAAGKAYYEGLFEFDKDLKIQNLLATGYEVSPDGLVYTIKLRDGIKFHDGT FT DFNADAVKANFDRVANPENRLSRYTQFNRVAKTEVVDPHTVRITLKEPFSAFINALAHP FT AAMMISPAALQKYGKEIGFHPVGTGPFKFVEWKPAEYLKVEKFDGYWRKGYPKVDTLTF FT RTVTDNNTRAAVVQTGEAQFAFPIPYEQAAVLAKNDKLDVVDHKNSIMARYLSMNTRVK FT PFDNVKVRQAINYAINKQALAKVAFNGYATVVDGVVPQGVDFAYKIGQWPYDPAKARAL FT LKEAGYPNGFETSLWSAYNDGTSVKVVQFLQQQLAQVGIKASVEVLESGQRVQRVQQVQ FT KPEDAKVRMYYAGWSSSTGEADWGLRPLLSTAAFPPVMNNISYYSTPKVDDSLMKALAT FT TDRSEKAELYKNAQETIWNDAPWAFLVTQNNVYVKSKNLSGVYVEPDTSFWFGDIDLKQ FT " FT misc_feature complement(103465..104889) FT /note="HMMPfam hit to PF00496, Bacterial extracellular FT solute-binding proteins, family 5" FT misc_feature complement(104710..104778) FT /note="ScanRegExp hit to PS01040, Bacterial extracellular FT solute-binding proteins, family 5 signature. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature complement(104926..105009) FT /note="Signal peptide predicted for BP2396 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.952) with cleavage site FT probability 0.942 between residues 48 and 49" FT CDS complement(105080..106981) FT /transl_table=11 FT /locus_tag="BP2397" FT /product="putative ABC transporter ATP-binding subunit" FT /note="Similar to Agrobacterium tumefaciens strC58 FT Agr_l_685p TR:AAK88917 (EMBL:AE008234) (606 aa) fasta FT scores: E(): 3.4e-108, 55.39% id in 621 aa, and to FT Escherichia coli hypothetical ABC transporter ATP-binding FT protein YliA or b0829 SW:YLIA_ECOLI (P75796) (629 aa) fasta FT scores: E(): 5.9e-70, 66.98% id in 621 aa" FT /db_xref="GOA:Q7VW69" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VW69" FT /protein_id="CAE42668.1" FT /translation="MVDRANSLAMPENRVVQVEDLTVRFVGAERTVEAVRNLSFHVDRG FT ETLAIVGESGSGKSVTSLALMRLVEHGGGRIAQGRIALRRRNGDIVDLGASSQRAMRSV FT RGADMAMIFQEPMTSLNPVFTAGEQIAETIRLHQGKDAAAARAEALRMLEQVRIPEARS FT VMDRHPHQLSGGMRQRVMIAMALACKPALLIADEPTTALDVTIQAQILQLIRQLQEEMR FT MGVVFITHDMGVVAEVADRVLVMYRGDKVEEGPSERIFAQPRHHYTQALLSAVPKLGAM FT QGTDHPARFPLLRVDESAAAEPEPPATPAGPAPAESGPAGERQPILSVRDLITRFDLRG FT GIFSRVQRRVHAVEKVSFDLYPGETLSLVGESGCGKSTTGRSLLRLVDSQGGQVHFGGR FT DITKLKTAELQALRRDIQFVFQDPFASLDPRVTVGFSIMEPLLVHGVASGKQAERRVAE FT LLERVGMPPEMAQRYPHEFSGGQRQRICIARALALDPKVVIADESVSALDVSIQAQIVN FT LLIDLQRDLGIAFLFISHDMAVVERVSHRVAVMYLGQIVEIGPRRAIFENPQHPYTRKL FT MAAVPIADPARRHMSRTLLSDEIPSPIRQLNDEPVVAPLVAVGPDHFVARHSVGGAY" FT misc_feature complement(105323..105895) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(105509..105553) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(105851..105874) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(106238..106849) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(106424..106468) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(106805..106828) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(107026..108006) FT /transl_table=11 FT /locus_tag="BP2398" FT /product="putative L-asparaginase" FT /note="Similar to Vibrio cholerae asparaginase, putative FT vc2603 TR:Q9KNX7 (EMBL:AE004327) (326 aa) fasta scores: FT E(): 4.2e-47, 48.75% id in 320 aa, and to Lupinus luteus FT L-asparaginase SW:ASPG_LUPLU (Q9ZSD6) (325 aa) fasta FT scores: E(): 9.7e-40, 42.99% id in 307 aa" FT /db_xref="GOA:Q7VW68" FT /db_xref="HSSP:1K2X" FT /db_xref="InterPro:IPR000246" FT /db_xref="UniProtKB/TrEMBL:Q7VW68" FT /protein_id="CAE42669.1" FT /translation="MTQPIIAIHGGAGAISRAAMPADKEKEYLDALARIVAAGQAVLAG FT GGSAIDAVTEAVRLLEDCPLFNAGHGAVFTSAGTHELDAAIMDGATLRSGAIANVDCVR FT NPVRAARAVMEHSKHVFFVGEGAVALAREHGLELVDPGYFSTEARREQLLRVQRETPGA FT AVLDHDGQALVTQGQPAPADPLDADRKFGTVGAVALDAQGNLAAATSTGGITNKQVGRV FT GDAPLIGAGTYASNRTCAVSTTGTGEMFIRMVAAYDVAAQMEYCGATLAQAADRVVHDK FT LPTIEGKGGLVAVDAHGNVALPFNTEGMYRGHGRVGEPPVVAIYR" FT misc_feature complement(107029..108003) FT /note="HMMPfam hit to PF01112, Asparaginase" FT CDS complement(108003..108887) FT /transl_table=11 FT /locus_tag="BP2399" FT /product="putative transcriptional regulator" FT /note="Similar to Clostridium acetobutylicum FT transcriptional regulators, RpiR family cac1850 TR:Q97I06 FT (EMBL:AE007693) (293 aa) fasta scores: E(): 1.3e-17, 33.46% FT id in 263 aa" FT /db_xref="GOA:Q7VW67" FT /db_xref="InterPro:IPR001347" FT /db_xref="UniProtKB/TrEMBL:Q7VW67" FT /protein_id="CAE42670.1" FT /translation="MTLPPTSIADRIARAQPAFSRTQHRMAEYVLAHQFRVATMTIDEF FT AVAVGVSVATANRFARVLELPGYPQFRAELARGFESALEPVEKLRIELAHSASAAQVFA FT ATLQEDIYNAQMTLQALDAGACERAVEAILNAERVFIIGFGASGFLAGLLQRGLCMHLH FT AVESLAGPGGVSHAARQMSRMTSRDLVIALAFPRYLADTVTLANAAKLAGVPVLVLTDK FT PTSPLAPCATVALYAHMSRQLSSNAETAALGLIEALSAAVAHRAKNSIAAAAGVAQSVM FT PWLIHGEAGAGKR" FT misc_feature complement(108084..108500) FT /note="HMMPfam hit to PF01380, SIS domain" FT misc_feature complement(108705..108770) FT /note="Predicted helix-turn-helix motif with score 1065 FT (+2.81 SD) at aa 40-61, sequence MTIDEFAVAVGVSVATANRFAR" FT CDS complement(109111..109764) FT /transl_table=11 FT /locus_tag="BP2400" FT /product="putative coenzyme A transferase subunit" FT /note="Similar to Deinococcus radiodurans CoA transferase, FT subunit B dra0067 TR:Q9RZ87 (EMBL:AE001862) (209 aa) fasta FT scores: E(): 6.4e-61, 80.09% id in 211 aa, and to FT Helicobacter pylori succinyl-coa:3-ketoacid-coenzyme A FT transferase subunit B ScoB or hp0692 SW:SCOB_HELPY (P56007) FT (207 aa) fasta scores: E(): 2.8e-44, 60.76% id in 209 aa. FT Also similar to BP1789 (46.667% identity in 210 aa FT overlap), and to BP222 (49.756% identity in 205 aa FT overlap)." FT /db_xref="GOA:Q7VW66" FT /db_xref="InterPro:IPR004164" FT /db_xref="UniProtKB/TrEMBL:Q7VW66" FT /protein_id="CAE42671.1" FT /translation="MAWSRDEMAARAARELQDGFYVNLGIGLPTLVANHVPKGVEVWLQ FT SENGLLGIGPFPTDDEVDADLINAGKQTVTTLPGSSIFSSADSFAMIRGGKINLAILGA FT MQVSEKGDLANWMIPGKMVKGMGGAMDLVAGVGKVVVLMEHVARKKDGTEDIKLLPECK FT LPLTGVGVVDLIITDLGVMKVTEDGLKLLELAPGVTVDEIKAKTLAKLDVSAVK" FT misc_feature complement(109144..109755) FT /note="HMMPfam hit to PF01144, Coenzyme A transferase" FT misc_feature complement(109609..109635) FT /note="ScanRegExp hit to PS01274, Coenzyme A transferases FT signature 2. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(join(109777..110211,110211..110474)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP2401" FT /product="putative coenzyme A transferase subunit FT (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 88. The sequence has been checked FT and believed to be correct. Similar to Xanthomonas FT campestris succinyl-CoA:3-ketoacid-coenzyme A transferase FT subunit A LpsI or WxcI TR:O34264 (EMBL:AF204145) (242 aa) FT fasta scores: E(): 2e-62, 74.56% id in 228 aa, and to FT Escherichia coli acetate CoA-transferase alpha subunit AtoD FT or b2221 SW:ATOD_ECOLI (P76458) (220 aa) fasta scores: E(): FT 6.9e-32, 45.58% id in 204 aa. Also similar to BP0221 FT (48.684% identity in 228 aa overlap), and to BP1788 FT (46.083% identity in 217 aa overlap)." FT /db_xref="PSEUDO:CAE42672.1" FT misc_feature complement(join(109822..110211,110211..110468)) FT /note="HMMPfam hit to PF01144, Coenzyme A transferase" FT variation complement(110212..110213) FT /note="CG in pertussis; C(A)G in parapertussis and FT bronchiseptica" FT misc_feature complement(110376..110423) FT /note="ScanRegExp hit to PS01273, Coenzyme A transferases FT signature 1." FT CDS complement(110578..111027) FT /transl_table=11 FT /locus_tag="BP2402" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2801 TR:Q9I042 (EMBL:AE004707) (134 aa) fasta FT scores: E(): 4.8e-12, 36.97% id in 119 aa" FT /db_xref="InterPro:IPR006683" FT /db_xref="UniProtKB/TrEMBL:Q7VW65" FT /protein_id="CAE42673.1" FT /translation="MNRDEHAVRTLEVGDAHQVDIPLRWGDSDCLNHVNNTIYFRMMEE FT ARVRILYEAGYELPGQFGVILAHASCDFLRPLTYPGEVRVTHTVVRIGRSSMDLDLTLE FT KVGEEGEPYARSRNVLVWVNYQTNRAEPWPARLLERMAAQMRPAA" FT CDS 111155..112783 FT /transl_table=11 FT /locus_tag="BP2403" FT /product="putative electron transfer FT flavoprotein-ubiquinone oxidoreductase" FT /note="Similar to many eg. Pseudomonas aeruginosa electron FT transfer flavoprotein-ubiquinone oxidoreductase Pa2953 FT TR:Q9HZP5 (EMBL:AE004721) (551 aa) fasta scores: E(): FT 1.7e-137, 61.9% id in 546 aa, and to Homo sapiens electron FT transfer flavoprotein-ubiquinone oxidoreductase, FT mitochondrial precursor EtfdH SW:ETFD_HUMAN (Q16134) (617 FT aa) fasta scores: E(): 4.5e-83, 55.43% id in 552 aa" FT /db_xref="GOA:Q7VW64" FT /db_xref="InterPro:IPR003042" FT /db_xref="UniProtKB/TrEMBL:Q7VW64" FT /protein_id="CAE42674.1" FT /translation="MEYDVVVVGGGPAGLAAAIRLKQLAAEKNHEVSVCVLEKGSELGA FT HILSGAVMDPQALTELIPDWKEKGAPLNVPVTQDKFLFLSATGARSTPNWLLPACFHNE FT GNYIVRLGDVVKWLGEQAEALGVDIFPGFAAAEVLYDENGAVHGVATGDMGVARDGTHT FT DHYQPGMELLARYTLFAEGSRGQLGRQLIGRYKLDEGRNPQSYGIGIKEMWEVDPAQSR FT PGLVVHTAGWPLDSDTYGGSFLYHLDNNVVVVGLIVGLDYANPWLSPFEEFQRYKTHPA FT IRGTFEGGKRIAYGARAITAGGLLSLPKLAFPGGALIGCEAGFLNASRIKGSHAAIKSG FT KMAAEAAFDAVASDRSHDELASYASAFESSWLHAELNKARNFKQWFKKGRTVGTFMTGI FT EQWLLKGKFPWTLRHNKPDHACLQPASQCARIDYPKPDGKLTFDKLSSVFISNTNHEEN FT QPVHLTLKDDSVPVAVNLAKYGGPESRYCPAGVYEFIKDDHGADRLQINAQNCVHCKTC FT DIKDPTQNIVWVAPQGGEGPVYSGM" FT CDS 112881..113765 FT /transl_table=11 FT /locus_tag="BP2404" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa5343 TR:Q9HTL5 (EMBL:AE004946) (283 aa) fasta FT scores: E(): 2.3e-30, 42.6% id in 284 aa, and to FT Escherichia coli, and protein YeeZ precursor or b2016 or FT z3178 or ecs2818 SW:YEEZ_ECOLI (P76370) (274 aa) fasta FT scores: E(): 2.4e-13, 32.5% id in 283 aa" FT /db_xref="GOA:Q7VW63" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VW63" FT /protein_id="CAE42675.1" FT /translation="MSERVLLAGCGDLGVRVARRLLARGDQVWALRRQPPPAEDGGLRW FT IAADLTQPATLAGLPDGLTQVVYLPAPGAHDPARYREIFVDGLRHLRDALDTAALRRTL FT FVSSSAVYGEHDGQWVDEHTPPGPLGFNGRSLLEAERSLDAWPGQAVVLRLAGLYGPGR FT LQLLERLRAGQARAPVDPPHWANRIHIDDAAAAIAHLLRLPAPEKLYLGCDDTTLPLHE FT LYAALATLAGAPPPGEGPAPAQVGSKRLCNARLRASGLQLQWPDSRAGYAALLDGKATL FT QATIHTTTKRSIP" FT CDS 113762..114910 FT /transl_table=11 FT /locus_tag="BP2405" FT /product="putative cytochrome p450 oxidoreductase" FT /note="Similar to Streptomyces galilaeus AknT TR:Q9L4U5 FT (EMBL:AF264025) (443 aa) fasta scores: E(): 0.0076, 28.02% FT id in 389 aa, and to Rhodococcus fascians cytochrome p450 FT Fas1 or cyp105e1 SW:FAS1_RHOFA (P46373) (399 aa) fasta FT scores: E(): 0.48, 23.63% id in 402 aa" FT /db_xref="GOA:Q7VW62" FT /db_xref="InterPro:IPR001128" FT /db_xref="UniProtKB/TrEMBL:Q7VW62" FT /protein_id="CAE42676.1" FT /translation="MIADTARQHRGDSMQPADPLEAVAHPDPYPYYAALARERPFYHDD FT RLGLWVAAGPQAIRAVLTCPAARVRPPGEPVPAALGAGPAAQMFGRFIRMNDGAVHERL FT KPMLTAYLTQRTAADLAEPAWPAIGNDPAQVDRYLYQAPVHAQACLMGLPDEVAASCAR FT EIEAFMAACRPGADAAAVARADQAAQALQARMLAHLRAARGDAALGVLRRLALAGGVEA FT DALAANLAGLLLQSCEAGAGLLDNALVHAGRLSPAAAPDLLHTCVEIVTHVARHDPPLH FT NTRRFLAAPATLLGQSAPAGAGILVVLAAAHALAEGAWPWTFGAERHACPGRTPALLHA FT AQALAHALRHGVDAPALARCVRYRPLPNARVPRFHFPPGDTP" FT CDS 114907..115269 FT /transl_table=11 FT /locus_tag="BP2406" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti Mll4602 protein TR:Q98DQ1 FT (EMBL:AP003004) (114 aa) fasta scores: E(): 9.8e-29, 69.36% FT id in 111 aa" FT /db_xref="GOA:Q7VW61" FT /db_xref="InterPro:IPR007138" FT /db_xref="UniProtKB/TrEMBL:Q7VW61" FT /protein_id="CAE42677.1" FT /translation="MIAVIFEVQPAAEGGRAAYLDIAAGLLPHLRAIDDFISVERFESL FT STPGKLLSLSFWRDEEAVRNWRALAEHRQAQSAGRNGVFQDYRLRVAHVLRDYGMQARD FT QAPPDSRQAHDGPAGG" FT CDS complement(115283..116302) FT /transl_table=11 FT /gene="ltaE" FT /locus_tag="BP2407" FT /product="low-specificity L-threonine aldolase" FT /EC_number="4.1.2.5" FT /note="Similar to Escherichia coli low-specificity FT L-threonine aldolase LtaE or b0870 SWALL:LTAE_ECOLI FT (SWALL:P75823) (333 aa) fasta scores: E(): 8.3e-65, 55.49% FT id in 337 aa, and to Pseudomonas aeruginosa FT L-allo-threonine aldolase Gly1 or pa0902 SWALL:O50178 FT (EMBL:AF011922) (334 aa) fasta scores: E(): 2e-69, 61.81% FT id in 330 aa" FT /db_xref="GOA:Q7VW60" FT /db_xref="HSSP:1JG8" FT /db_xref="InterPro:IPR015422" FT /db_xref="UniProtKB/TrEMBL:Q7VW60" FT /protein_id="CAE42678.1" FT /translation="MIDLRSDTVTRPSAAMRQAMAAAPVGDDVMGDDPSVRRLQDEVAA FT RAGKEAGLFFPSGTQSNLAALMAHCARGDEYLVGQQAHTYKFEGGGAAVLGSIQPQPVD FT HAADGSLPLDRLAAALKPGGDPHFARTRLLALENTFQGRVMPAGYVAQATGWAREHGLS FT THLDGARVFNAAVASGVPVQQLCEPFDTVSICFSKGLGAPVGSVLVGSRALIEQAHRWR FT KMLGGGMRQAGILAAACLHALHHHVERLALDHDNAARLAAGLDGIDGVRVLGQHTNMVF FT AEFDPARCESLTTALRGQGILMRAVYGGPTRLVTHLDVDADGIDRVVDAVRGHCAAAR" FT CDS complement(116324..117214) FT /transl_table=11 FT /locus_tag="BP2408" FT /product="putative integral membrane protein" FT /note="Similar to several including: Escherichia coli FT O157:H7 EDL933 hypothetical protein YijE TR:AAG59144 FT (EMBL:AE005625) (312 aa) fasta scores: E(): 5.7e-41, 44.01% FT id in 284 aa and to Escherichia coli hypothetical protein FT YijE or b3943 SW:YIJE_ECOLI (P32667) (301 aa) fasta scores: FT E(): 9.6e-41, 44.01% id in 284 aa" FT /db_xref="GOA:Q7VW59" FT /db_xref="InterPro:IPR000620" FT /db_xref="UniProtKB/TrEMBL:Q7VW59" FT /protein_id="CAE42679.1" FT /translation="MNRAAFDRVGLMLLTIFVWAGSWIAMKLVVPYIGPFDFIAVRYLA FT GAVVLFSILVATGRPLGMPPWKLTLLAAATQITGFQGFVQTALISGGVGKVSLMAYTMP FT FWVVLFAWALQGERPTARHWGGIALAAVGLVCFLDPWAGLGDLAPVALGLCSGLCWGLG FT TVLSKRMFERHAPDIMTFTAWQMLLGGVVILPFAWLVPQIPAQWGGWRLWLGMSYIVLV FT ATALGWILWLLVVRRVPASIAGLSSLGVPVVAVLLAWAILGERPTLTEMAGMALILFGL FT WVVSRAARPAPRAAS" FT misc_feature complement(116357..116743) FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6" FT misc_feature complement(join(116360..116410,116426..116491, FT 116513..116578,116609..116674,116714..116764, FT 116780..116845,116885..116950,117032..117097, FT 117119..117184)) FT /note="9 probable transmembrane helices predicted for FT BP2408 by TMHMM2.0 at aa 10-32, 39-61, 88-110, 123-145, FT 150-167, 180-202, 212-234, 241-263 and 268-285" FT misc_feature complement(116798..117166) FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6" FT CDS complement(117360..119339) FT /transl_table=11 FT /locus_tag="BP2409" FT /product="acetyl-coenzyme A synthetase" FT /EC_number="6.2.1.1" FT /note="Similar to Alcaligenes eutrophus acetyl-coenzyme A FT synthetase AcoE SW:ACSA_ALCEU (P31638) (660 aa) fasta FT scores: E(): 1.2e-212, 76.56% id in 657 aa and to FT Synechocystis sp acetyl-coenzyme A synthetase Acs or FT Sll0542 SW:ACSA_SYNY3 (Q55404) (653 aa) fasta scores: E(): FT 3.6e-141, 54.02% id in 659 aa" FT /db_xref="GOA:Q7VW58" FT /db_xref="InterPro:IPR000873" FT /db_xref="UniProtKB/TrEMBL:Q7VW58" FT /protein_id="CAE42680.1" FT /translation="MSNAIQSVLVENRVFPPPASAVQGAAISGMDAYWALCEEADKDFN FT GFWSRLARENLQWTKSFTQVLDESEAPFYRWFGDGELNVSANCLDVHLHNGNADKTAII FT FESDDGKVDKISYRELLARVCRFANGLKAMGYKKGDRAIIYMPMSIEAVVAVQACARLG FT VTHSVVFGGFSAKSLQERIVDVGATVVITADEQVRGGKTIPLKPAVEEAFAMGGCEAVS FT KVVVYRRTGGKIAWQEGRDVWMHDVEAGQADTCEPQAVNAEHPLFILYTSGSTGKPKGV FT QHASAGYLLWALLTMKWTFDARADDVYWCTADVGWVTGHTYITYGPLAAGVTQVVFEGV FT PTFPNAGRFWDMIARHKVSVFYTAPTAIRSLIKAAEANQEVHPRQYDLDSLRIIGSVGE FT PINSEAWIWYHKNVGRERCPVVDTWWQTETGGHMLTPLPGATPLKPGSCTLPLPGIVAA FT IVDETGGDVAQGNGGFLVIKRPWPAMIRNIWGDPERFKKSYFPPELRGYYLAGDGAQRD FT ADGYFWIMGRIDDVLNVSGHRLGTMEVESALVAHEMVAEAAVVGRPDDTTGEAVVAFVV FT LKRSRPEGDEAQAIARQLRDWVGKEIGPIAKPKDIRFGDNLPKTRSGKIMRRLLRVVAK FT GEEITQDVSTLENPAILEQLAKPL" FT misc_feature complement(117663..118994) FT /note="HMMPfam hit to PF00501, AMP-binding enzyme" FT misc_feature complement(118503..118538) FT /note="ScanRegExp hit to PS00455, Putative AMP-binding FT domain signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS complement(join(119551..120282,120284..120889)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP2410" FT /product="putative integral membrane protein (pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 202. The sequence has been checked FT and believed to be correct. Similar to many including: FT Streptomyces coelicolor putative integral membrane protein FT Sc6d7.19C TR:Q9RKX9 (EMBL:AL133213) (486 aa) fasta scores: FT E(): 6e-23, 30.38% id in 441 aa and to Clostridium FT acetobutylicum MDR-type permease Cac1585 TR:Q97IQ5 FT (EMBL:AE007668) (425 aa) fasta scores: E(): 5.1e-21, 25.3% FT id in 411 aa." FT /db_xref="PSEUDO:CAE42681.1" FT variation complement(120284..120285) FT /note="AA in pertussis; AA(TA) in parapertussis and FT bronchiseptica" FT CDS complement(120886..121293) FT /transl_table=11 FT /locus_tag="BP2411" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa5352 pa5352 TR:Q9HTK6 (EMBL:AE004947) (133 aa) FT fasta scores: E(): 4.8e-26, 60.9% id in 133 aa, and to FT Escherichia coli protein glcg glcg or b2977 SW:GLCG_ECOLI FT (P45504) (134 aa) fasta scores: E(): 8.9e-24, 56.39% id in FT 133 aa" FT /db_xref="InterPro:IPR005624" FT /db_xref="UniProtKB/TrEMBL:Q7VW57" FT /protein_id="CAE42682.1" FT /translation="MKTKPVLVADDVKKILAAAEAHALANKWAVTIAVVDDGGHLLGQL FT RLDGAAPISARIAPAKAGTAALGRRESRVYEEIINNGRQAFLSAPLLEGMLEGGVPVTV FT DGEVVGAVGVSGVKSSEDAEIARAGIAALGL" FT CDS complement(join(121290..122840,122843..123181)) FT /pseudo FT /transl_table=11 FT /gene="prpE" FT /locus_tag="BP2412" FT /product="propionate--CoA ligase (pseudogene)" FT /EC_number="6.2.1.17" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 113. The frameshift occurs within FT a dimeric tract of (TG)2. The sequence has been checked and FT believed to be correct. Similar to Escherichia coli FT propionate--CoA ligase PrpE or B0335 SW:PRPE_ECOLI (P77495) FT (628 aa) fasta scores: E(): 1.5e-153, 61.53% id in 624 aa FT and to Escherichia coli O157:H7 EDL933 putative FT propionyl-CoA synthetase PrpE TR:AAG54683 (EMBL:AE005212) FT (628 aa) fasta scores: E(): 7.5e-154, 61.53% id in 624 aa." FT /db_xref="PSEUDO:CAE42683.1" FT misc_feature complement(join(121599..122840,122843..122926)) FT /note="HMMPfam hit to PF00501, AMP-binding enzyme" FT misc_feature complement(122433..122468) FT /note="ScanRegExp hit to PS00455, Putative AMP-binding FT domain signature. Confirmed by InterPro eMOTIF pattern FT match." FT variation complement(122841..122844) FT /note="(TG)2 in pertussis; (TG)1 in parapertussis and FT bronchiseptica" FT CDS 123414..124073 FT /transl_table=11 FT /locus_tag="BP2413" FT /product="putative lipoprotein" FT /note="Similar in parts to several including: Neisseria FT meningitidis outer membrane protein precursor Gna2001 FT TR:Q9JPN8 (EMBL:AF226471) (251 aa) fasta scores: E(): FT 2.1e-23, 44.37% id in 160 aa and to Xylella fastidiosa FT hypothetical protein Xf0653 TR:Q9PFK4 (EMBL:AE003909) (212 FT aa) fasta scores: E(): 1.5e-19, 47.93% id in 121 aa" FT /db_xref="InterPro:IPR000064" FT /db_xref="UniProtKB/TrEMBL:Q7VW56" FT /protein_id="CAE42684.1" FT /translation="MHRHSNPALPERNISLSSRGLRLLAVVACAVGLAGCAGTGAKKTS FT YTFESDPYDTEWVASADDPIGILVTQKLKRDRRAGQSQTSGENPLVSEALGQLGVRYRF FT DGISPDTGFDCSGLVAHTAERSLGLKLPRISADIARWGTNIDRKELRPGDLVFFNTLGR FT RYSHVGIYMGENRFIHSPSSGGVVRVENMTVAYWAKRYNGARRIDDSRLASARASN" FT misc_feature 123414..123536 FT /note="Signal peptide predicted for BP2413 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.922) with cleavage site FT probability 0.648 between residues 41 and 42" FT misc_feature 123489..123521 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 123693..124034 FT /note="HMMPfam hit to PF00877, NLP/P60 family" FT CDS complement(124178..124519) FT /transl_table=11 FT /locus_tag="BP2414" FT /product="conserved hypothetical protein" FT /note="Similar to Campylobacter jejuni hypothetical protein FT Cj1384C TR:Q9PMR6 (EMBL:AL139078) (104 aa) fasta scores: FT E(): 0.0014, 30.58% id in 85 aa and to Clostridium FT acetobutylicum predicted diverged chey-domain Cac1602 FT TR:Q97IN8 (EMBL:AE007670) (103 aa) fasta scores: E(): FT 1.4e-07, 34.06% id in 91 aa" FT /db_xref="InterPro:IPR016772" FT /db_xref="UniProtKB/TrEMBL:Q7VW55" FT /protein_id="CAE42685.1" FT /translation="MTAGLSAVVVGADRLGNIPDLLKGHNISITHHISGRDPSHQKKTL FT QLPSGTQLVILLTDFLGHNVMKTFRHAAQRGGIRVVACRRSVCSMQQALHQCGLCARSL FT PRGNAVPPS" FT repeat_region 124726..124757 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 124726..125778 FT CDS 124828..125778 FT /transl_table=11 FT /locus_tag="BP2415" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7VW54" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7VW54" FT /protein_id="CAE42686.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLGEYNLLTVHN" FT misc_feature 125086..125151 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 125209..125742 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(125749..125778) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(125775..126728) FT /transl_table=11 FT /locus_tag="BP2416" FT /product="putative LysR-family transcriptional regulator" FT /note="Similar to several LysR-family transcriptional FT regulators including: Pseudomonas aeruginosa CysB or pa1754 FT TR:O05926 (EMBL:U95379) (324 aa) fasta scores: E(): FT 1.6e-49, 46.45% id in 310 aa and to Salmonella typhimurium FT cys regulon transcriptional activator CysB or Stm1713 FT SW:CYSB_SALTY (P06614) (324 aa) fasta scores: E(): 6.7e-49, FT 45.68% id in 313 aa" FT /db_xref="GOA:Q7VW53" FT /db_xref="HSSP:1AL3" FT /db_xref="InterPro:IPR005119" FT /db_xref="UniProtKB/TrEMBL:Q7VW53" FT /protein_id="CAE42687.1" FT /translation="MNLQQFRFVRETIRRDFNLTEAARMLYTSQPGVSKAIIEFEDELG FT IKIFERHGKRIKGLTKPGLAVSQVIDRIMREVDNLKKVSDEFARRDEGGLVIACTHTQA FT RYLLPRVIPAFRKQFPKVHLSVAEGSPSQLAEMVLHEQADLALATESLALTPGLATLPV FT YTWEHTVVVRPDHPLTELTSSQARRLTLAQLAEYPIVTYDRAFTGRTTIDEIFANQGIH FT PDIVLEAIDADVIKTYVDVGLGIGIIAGVAYDPRRDANLVGLPVGHLFGTHTTRVGVKS FT GVFLRDYVYTFMEMMAPGLTRQVVSEAVQGRAGLNG" FT misc_feature complement(126288..126722) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(126585..126677) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT misc_feature complement(126615..126680) FT /note="Predicted helix-turn-helix motif with score 1432 FT (+4.06 SD) at aa 17-38, sequence FNLTEAARMLYTSQPGVSKAII" FT CDS complement(126828..128294) FT /transl_table=11 FT /locus_tag="BP2417" FT /product="putative oxidoreductase" FT /note="Highly similar to Eukaryotic methylmalonate FT semi-aldehyde dehydrogenases. Note as you would expect the FT predicted product of this CDS lacks the N-terminal FT Mitochondrial targeting signal sequence possessed by the FT Eukaryotic proteins. Similar to Arabidopsis thaliana FT putative methylmalonate semi-aldehyde dehydrogenase FT At2g14170 TR:Q9SI43 (EMBL:AC007197) (607 aa) fasta scores: FT E(): 4.5e-113, 56.87% id in 487 aa and to Homo sapiens FT methylmalonate-semialdehyde dehydrogenase [acylating], FT mitochondrial precursor MmsdH SW:MMSA_HUMAN (Q02252) (535 FT aa) fasta scores: E(): 1.6e-110, 55.27% id in 474 aa. Also FT similar to prokaryotic dehydrogenases inculding: FT Pseudomonas aeruginosa probable aldehyde dehydrogenase FT Pa0747 TR:Q9I5I2 (EMBL:AE004509) (502 aa) fasta scores: FT E(): 4.4e-102, 53.13% id in 495 aa" FT /db_xref="GOA:Q7VW52" FT /db_xref="HSSP:1BXS" FT /db_xref="InterPro:IPR016162" FT /db_xref="UniProtKB/TrEMBL:Q7VW52" FT /protein_id="CAE42688.1" FT /translation="MIGGKLVQSKTTQWRDVINPATQEVVAQVPFATREELDLAVANAK FT EAFKTWRNTGQGARMRVMLKLQQLLRDNTGKLAEMITREHGKTLPDAEGEVGRGLEVVE FT HACSIANLQLGEYAENAAGGIDVYTLIQPLGVCAGITAFNFPVMLPCFMFPIAVACGNT FT FVLKPSEQDPSSSLFLAQLALEAGLPPGVLNVVHGGPDIANGLCEHPDIKAVSFIGSTR FT VGTEIYNRASAAGKRCQSMMGAKNHCVILPDADPEVALNQLVGAAFGAAGQRCMATSVA FT VMVGEARNWLPDFVERARKLKVNNGVDREADLGPLVSPAAKQRVEGLIQKGVDEGAKLL FT LDGRSLKVAGFEQGNFVGPTIFDGVTENMTIYTEEVFGPVLCVVGVDTLEDAVEFINRN FT PNGNGVALFTQDGGAARYFQNNIDVGQVGINIPIPVPVAWFSFTGSRGSKLGDLGPNGK FT QAVQFWTQTKTVTARWSAHGRGVNTTISMK" FT misc_feature complement(126873..128282) FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family" FT misc_feature complement(127458..127493) FT /note="ScanRegExp hit to PS00070, Aldehyde dehydrogenases FT cysteine active site." FT CDS complement(128407..129624) FT /transl_table=11 FT /locus_tag="BP2418" FT /product="putative ABC transport protein, substrate-binding FT component" FT /note="Similar to many members of the ABC family of FT transport proteins incuding: Rhizobium meliloti putative FT periplasmic binding ABC transporter protein Smc03121 FT TR:CAC47551 (EMBL:AL591792) (401 aa) fasta scores: E(): FT 3.7e-75, 50.5% id in 394 aa and to Azoarcus evansii FT putative substrate binding protein TR:AAL02070 FT (EMBL:AF320253) (391 aa) fasta scores: E(): 1.5e-13, 25.26% FT id in 372 aa" FT /db_xref="InterPro:IPR001828" FT /db_xref="UniProtKB/TrEMBL:Q7VW51" FT /protein_id="CAE42689.1" FT /translation="MKSRARGFAAGLCLGAMLVGQAMAADKPPVKIGILTDMSGTYAGM FT GGPGSVAAAQLAIDDCLAAECKGMKIDLVSADNQNKTDVGAAKAREWFDRDGVTAIADL FT TNSAVALAVQGIAREKNKVVMFSGPAATALTNQDCSPLGFHWMFDTYSQSAGGAKATVR FT AGGKSWYFITVDYAFGHSLEADTAKAVQALGGTVAGSVRHPLNAPDFASYLLQAQSSKA FT QVVALANGGQDTVNAVKQAREFGIVEGGQRLVSLLVFLSDLRALGLDNAQGLSYVDGFY FT WDYDDATRQWSARFEKAFRGLKPTMVQAGVYSSVLHYLRAVAASGSTDGKVVADKMREL FT PIKDPIMRNASIRPDGRVIHDMYLYEVKKPAESKGGWDYSKLVATIPAAEAFQPLAEST FT CPLVKK" FT misc_feature complement(129550..129603) FT /note="1 probable transmembrane helix predicted for BP2418 FT by TMHMM2.0 at aa 7-25" FT misc_feature complement(129553..129624) FT /note="Signal peptide predicted for BP2418 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 24 and 25" FT CDS 129764..130684 FT /transl_table=11 FT /locus_tag="BP2419" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa3711 SWALL:Q9HXT0 FT (EMBL:AE004790) (301 aa) fasta scores: E(): 7.6e-46, 43.37% FT id in 302 aa, and to Rhizobium meliloti putative FT transcription regulator protein R02971 or Smc03122 FT SWALL:Q92LQ9 (EMBL:AL591792) (315 aa) fasta scores: E(): FT 2.4e-42, 39.93% id in 303 aa" FT /db_xref="GOA:Q7VW50" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VW50" FT /protein_id="CAE42690.1" FT /translation="MLDWDSLRYFLEVARTQRVSAAARKLGVEHTTVARRVRALEAELD FT SLLFEKSRSAGYVLTEDGQRLFVFAEQMESTVHTARENLSGIGQALSGHVRIGATEGFG FT SYVLTPLAADFQRRYPHITLDILPVPRFVSLSKREADLAITIERPQRGPYVCTKLCDYT FT LMLYGTPAYLARHAPIRERADLAGHNFIGYVDELLFSERLRYLEDVLPNSQVVLRSTSV FT IAQYHATLQGQSLAILPCFIAAQDPRLTPVLPDDIAITRSFWMYCHEDLRRLKRVSALW FT EFMRRSVMRNAALLQGRGAALQYLP" FT misc_feature 129773..130195 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 129812..129877 FT /note="Predicted helix-turn-helix motif with score 1185 FT (+3.22 SD) at aa 30-51, sequence QRVSAAARKLGVEHTTVARRVR" FT misc_feature 129815..129907 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS complement(130681..131793) FT /transl_table=11 FT /locus_tag="BP2420" FT /product="putative integral membrane protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nmb1570 TR:Q9JYI6 (EMBL:AE002507) (371 aa) fasta FT scores: E(): 1.6e-33, 32.86% id in 359 aa and to Neisseria FT meningitidis conserved integral membrane hypothetical FT protein Nma1759 TR:Q9JTI7 (EMBL:AL162757) (371 aa) fasta FT scores: E(): 2.1e-33, 32.78% id in 363 aa" FT /db_xref="GOA:Q7VW49" FT /db_xref="InterPro:IPR005495" FT /db_xref="UniProtKB/TrEMBL:Q7VW49" FT /protein_id="CAE42691.1" FT /translation="MSLFKRSVVSEITSHAGVVFSTLVVVWLSVLLVRLLGEAAGGSIG FT ADVVLGLAAFSTITALPTILAVSLFIAVLTTVTRNYRESEMVVWFASGLSLADWLRPVA FT RVAVPIAMLVAALTLVASPWAYRQIGEYRELFEQRSDLSKVTAGQFAESGRGDRVFFAE FT DPVRPGDELGAVFARSIDPEWLSVLTASNARSETLPNGDRFLVLGEGHRYDLKPGTPEI FT RLVNFDQYGVRLESKAGEDPMAEARAAAERSSKARSTMQLVQDNTDSSWSQIMWRVAMP FT LAALNLALLAIPLGAVNPRLGRSGDLLIAGLVGLLYMNMINLSRAWISSGKISFSIGVW FT AVHAVVALLAAYLLMRRLRVKAPRNAGRGA" FT misc_feature complement(join(130729..130794,130807..130872, FT 131419..131484,131581..131646,131683..131748)) FT /note="5 probable transmembrane helices predicted for FT BP2420 by TMHMM2.0 at aa 15-37, 49-71, 103-125, 307-329 and FT 333-355" FT CDS 131847..133346 FT /transl_table=11 FT /gene="pepA" FT /locus_tag="BP2421" FT /product="cytosol aminopeptidase" FT /EC_number="3.4.11.1" FT /note="Highly similar to Pseudomonas aeruginosa cytosol FT aminopeptidase PepA or PhpA or Pa3831 SW:AMPA_PSEAE FT (O68822) (495 aa) fasta scores: E(): 1.2e-97, 56.68% id in FT 501 aa and to Escherichia coli cytosol aminopeptidase PepA FT or XerB or CarP or b4260 or z5872 or ecs5237 SW:AMPA_ECOLI FT (P11648) (503 aa) fasta scores: E(): 9.3e-88, 48.9% id in FT 501 aa" FT /db_xref="GOA:Q7VW48" FT /db_xref="HSSP:1GYT" FT /db_xref="InterPro:IPR008283" FT /db_xref="UniProtKB/Swiss-Prot:Q7VW48" FT /protein_id="CAE42692.1" FT /translation="MEFSTQTTASLHQIKTAALAVGVFADGVLSAAAEVIDRASHGAVA FT AVVKSEFRGRTGSTLVLRSLAGVSAQRVVLVGLGKQAEYNARAHASAEQAFAAACVAAQ FT VGEGVSTLAGVAIEGVPVRARARSAAIAAGAAAYHYDATFGKANRDARPRLKKIVQVVD FT RAASAQAQLGLREGAAIAHGMELTRTLGNLPGNVCTPAYLGNTAKKLAREFKSLKVEVL FT ERKQVEALGMGSFLSVARGSEEPLRFIVLRHAGKPAKKDKAGPVVLVGKGITFDAGGIS FT LKPAATMDEMKYDMCGAASVLGTFRALAELELPLDVVGLIAACENLPSGKANKPGDVVT FT SMSGQTIEILNTDAEGRLVLCDALTYAERFKPAAVIDIATLTGACVVALGNVNSGLFSK FT DDALADALLAASRQSLDPAWRLPLDDAYQDQLKSNFADIANIGGPPAGAVTAACFLSRF FT TKAYPWAHLDIAGTAWRGGKDKGATGRPVPLLMQYLLDQAG" FT misc_feature 131847..131942 FT /note="Signal peptide predicted for BP2421 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.896) with cleavage site FT probability 0.523 between residues 32 and 33" FT misc_feature 132006..133247 FT /note="HMMPfam hit to PF00883, Cytosol aminopeptidase FT family, catalytic domain" FT misc_feature 132897..132920 FT /note="ScanRegExp hit to PS00631, Cytosol aminopeptidase FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 133364..133819 FT /transl_table=11 FT /locus_tag="BP2422" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Smc00586 TR:CAC45735 (EMBL:AL591786) (149 aa) fasta scores: FT E(): 8.8e-06, 29.8% id in 151 aa and weakly to Escherichia FT coli DNA polymerase III, chi subunit HolC or b4259 FT SW:HOLC_ECOLI (P28905) (147 aa) fasta scores: E(): 0.00013, FT 26.24% id in 141 aa" FT /db_xref="GOA:Q7VW47" FT /db_xref="InterPro:IPR007459" FT /db_xref="UniProtKB/TrEMBL:Q7VW47" FT /protein_id="CAE42693.1" FT /translation="MTRIDFAFGAPDRLRAACRTARKRFQAGQRLVVYCADGGRLAAFD FT RMLWALEDVSFVPHVLANDALAADTPVLLTAGDPAAALALATTGDSRPWLLNLDDGCPP FT NFDGYERLLEIVSDDPADRQAARQRWRDYQNAGHALHSHDLSRAGEA" FT CDS 133850..134176 FT /transl_table=11 FT /locus_tag="BP2423" FT /product="hypothetical protein" FT /note="no significant database hits" FT /db_xref="UniProtKB/TrEMBL:Q7VW46" FT /protein_id="CAE42694.1" FT /translation="MPHHYSDSSIPTLTDRVEPGLGSPQAPAAIPRLSEQASAPPVSDE FT SGAASAPDTPFQPGDAVLRAVLQAELEETLTAAIDEAVAGIRARLDAELPAILARVMRN FT VRPG" FT CDS 134275..134985 FT /transl_table=11 FT /locus_tag="BP2424" FT /product="putative integral membrane protein" FT /note="Similar to several including: Escherichia coli FT hypothetical protein YccA or b0970 SW:YCCA_ECOLI (P06967) FT (219 aa) fasta scores: E(): 3.5e-22, 42.38% id in 210 aa FT and to Escherichia coli O157:H7 putative carrier/transport FT protein Ecs1054 TR:BAB34477 (EMBL:AP002554) (219 aa) fasta FT scores: E(): 4.6e-22, 42.38% id in 210 aa" FT /db_xref="GOA:Q7VW45" FT /db_xref="InterPro:IPR006214" FT /db_xref="UniProtKB/TrEMBL:Q7VW45" FT /protein_id="CAE42695.1" FT /translation="MNETRPSPFNRSGAYAGAPGEVVRNKVLRNTYWLLALSLVPTVLG FT AAVGLYTGINQVMGASPGLSAIVFLVGAFGLMFAIEKNKNNSLGVVLLLAFTFFMGVML FT SRLLGFVLGMGNGAQLVMTAFGGTAIVFGTMATLATTIKRDLSGMQKWLFTGAVVILVA FT ALANIFLQMPALMLTISVLAIVIFSAFMLVDLQRVINGGETNYVSATLAIYLDVYNVFS FT NLLMLLGIFGGDRE" FT misc_feature join(134368..134436,134449..134517,134536..134604, FT 134632..134691,134728..134784,134794..134853, FT 134890..134958) FT /note="7 probable transmembrane helices predicted for FT BP2424 by TMHMM2.0 at aa 32-54, 59-81, 88-110, 120-139, FT 152-170, 174-193 and 206-228" FT misc_feature 134404..134970 FT /note="HMMPfam hit to PF01027, Uncharacterized protein FT family UPF0005" FT CDS 135167..136120 FT /transl_table=11 FT /locus_tag="BP2425" FT /product="putative exported protein" FT /note="Similar in parts to Rhizobium meliloti hypothetical FT protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta FT scores: E(): 3.2e-45, 43.75% id in 320 aa, and to FT Alcaligenes eutrophus hypothetical 35.7 kDa protein MacB FT TR:Q9RBG2 (EMBL:AF130250) (340 aa) fasta scores: E(): FT 1.4e-36, 38.65% id in 313 aa" FT /db_xref="GOA:Q7VW44" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VW44" FT /protein_id="CAE42696.1" FT /translation="MYLRYALAGALTLACSGVQAEDFPARAITMIVPAAAGGNADITAR FT LVGQEMSKQLGQPVVIENRVGAGGRIGTQAVVRAAADGYTIGYAHVGTLVLHRFLFKEQ FT MYDIDKDLAPIGLVAETPNVIVVSQASPYRTLQDLIGASKAQPDRITMTSADPGTTSEV FT GVKLFIAQTGAGVRQIPYKATAAQLADLLGGHVDSMMENLPPLIGNLKDGRLRALAVTT FT RKRVASNPDVPTVAEQGYPDYEQGAWSALVAPAGTPPEALARLNQALNAALAAPAVSAE FT LRSRSQEPLGGPPAQVQAQVDKELPKWRSVIQAANP" FT misc_feature 135167..135226 FT /note="Signal peptide predicted for BP2425 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 20 and 21" FT CDS 136217..137086 FT /transl_table=11 FT /locus_tag="BP2426" FT /product="conserved hypothetical protein" FT /note="Weakly similar to several proteins of undefined FT function including: Agrobacterium tumefaciens StrC58 FT TR:AAK90609 (EMBL:AE007893) (335 aa) fasta scores: E(): FT 5.1e-19, 31.81% id in 286 aa, and to Rhizobium loti Mlr7142 FT protein TR:Q987A0 (EMBL:AP003011) (349 aa) fasta scores: FT E(): 1.6e-16, 29.24% id in 277 aa" FT /db_xref="GOA:Q7VW43" FT /db_xref="InterPro:IPR007036" FT /db_xref="UniProtKB/TrEMBL:Q7VW43" FT /protein_id="CAE42697.1" FT /translation="MLLMAGVHGDEWEGQAALLELWHALPGLLRRGTVYVAPAANAEAS FT LAGTRLSPADGGNLNRAFLGAPARGYTEAVAHALQTRILPQVQYMIDVHSGGASLRYLP FT ATVITRYGDDPWDERVARLARGFGLARCLFFRGVETGSMPAAASRLGVARLSAEIGGGA FT ETSQELVRLCRDGMLSCLAGLDMVDAHHAMPGPLEAFHDVDAPRASMRADAPGVFIPSV FT ALGQQVAAGQQVGTLCEPARPDRPPLTLASPQDGTVVCLRALARSDDGDCLLQIAPARP FT FETLSTLY" FT CDS join(137090..137197,138244..139239) FT /pseudo FT /transl_table=11 FT /locus_tag="BP2427" FT /product="threonine synthase (pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481. Similar to Rhizobium loti threonine synthase FT homolog mll9542 SWALL:Q98PA7 (EMBL:AP003017) (420 aa) fasta FT scores: E(): 1.3e-27, 35.09% id in 379 aa, and to FT Pyrococcus furiosus threonine synthase pf1180 SWALL:Q8U1M6 FT (EMBL:AE010226) (383 aa) fasta scores: E(): 5e-18, 30.81% FT id in 370 aa" FT /db_xref="PSEUDO:CAE42698.1" FT repeat_region 137194..138245 FT CDS 137296..138243 FT /pseudo FT /transl_table=11 FT /locus_tag="BP2427A" FT /product="transposase for IS481 element (pseudogene)" FT /note="Pseudogene. This transposase lacks a stop codon" FT misc_feature 137677..138210 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(138215..138245) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT variation 138244..138246 FT /note="TAC should be TAG stop for transposase" FT misc_feature 138316..139224 FT /note="HMMPfam hit to PF00291, Pyridoxal-phosphate FT dependent enzyme" FT CDS complement(139236..140171) FT /transl_table=11 FT /locus_tag="BP2428" FT /product="LysR-family transcriptional regulator" FT /note="Similar to many LysR-family transcriptional FT regulators including: Escherichia coli LysR or b2839 FT SW:LYSR_ECOLI (P03030) (311 aa) fasta scores: E(): 6.5e-21, FT 31.74% id in 293 aa and to Rhizobium loti Mlr7023 TR:Q987J8 FT (EMBL:AP003010) (301 aa) fasta scores: E(): 3.9e-17, 29.23% FT id in 301 aa" FT /db_xref="GOA:Q7VW42" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VW42" FT /protein_id="CAE42700.1" FT /translation="MRNHAMTFTLRQVETFRTVYETESVTAAARRLDVSPATVSATLAA FT LETAISMRLFERVRQRMVRTPEADLLYEEIRRQSLGLETLGRKIRAIKGAGQPRLRVGT FT IHAYSGLVIEQALVRFRGRYPDTPLYLQVRDSNTLRDMVVAGELDLALVADESELQGLR FT GHCLARLGAVAVFPRGHALARFAQLELSQLADAALVLLNREDGSRKRLDAVFAQRGIAP FT HAAIETPYSSTVCQLALAGHGVGIANPATAMGMAQAGLEFRPLDADVHFACYMILHGSR FT PLSSAGKYWATCLRAALAPLVEQFGVDAQV" FT misc_feature complement(139716..140144) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(140010..140102) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT misc_feature complement(140040..140105) FT /note="Predicted helix-turn-helix motif with score 1387 FT (+3.91 SD) at aa 23-44, sequence ESVTAAARRLDVSPATVSATLA" FT CDS complement(140176..140763) FT /transl_table=11 FT /locus_tag="BP2429" FT /product="hypothetical protein" FT /note="Similar to the N-termini of many RecO orthologues FT involved in recombination repair, including: Vibrio FT cholerae DNA repair protein RecO or Vc2459 TR:Q9KPB4 FT (EMBL:AE004316) (241 aa) fasta scores: E(): 2.7e-18, 42.85% FT id in 161 aa and to Pasteurella multocida DNA repair FT protein RecO or Pm1867 SW:RECO_PASMU (P57974) (240 aa) FT fasta scores: E(): 1.8e-17, 45.39% id in 141 aa" FT /db_xref="GOA:Q7VW41" FT /db_xref="InterPro:IPR003717" FT /db_xref="UniProtKB/TrEMBL:Q7VW41" FT /protein_id="CAE42701.1" FT /translation="MSRRAQRVHDIPGYMLHATAWRETSLIVQAFSREYGCIALVAKGA FT KRPYSVLRPVLSAFQPLLLSWSGAGEVKTMTRAEIAGVRPLGGPALMSAWYMNELLLRL FT LPCEDAHPVLYDAYDTALTQLSAGSRAAGALRRFEWILLRETGYGLDEAEPDFNDPAIE FT PALRRDLRERLEANLAGRPLSTRKVLLELQRL" FT CDS complement(140756..141646) FT /transl_table=11 FT /locus_tag="BP2430" FT /product="GTP-binding protein" FT /note="Similar to many GTP-binding proteins including: FT Escherichia coli GTP-binding protein Era or RbaA or b2566 FT SW:ERA_ECOLI (P06616) (301 aa) fasta scores: E(): 4.6e-44, FT 43.77% id in 297 aa and to Neisseria meningitidis FT GTP-binding protein Era homolog or Nmb0687 SW:ERA_NEIMB FT (Q9K0C7) (307 aa) fasta scores: E(): 2.1e-48, 51.54% id in FT 291 aa" FT /db_xref="GOA:Q7VW40" FT /db_xref="HSSP:1EGA" FT /db_xref="InterPro:IPR006073" FT /db_xref="UniProtKB/Swiss-Prot:Q7VW40" FT /protein_id="CAE42702.1" FT /translation="MSNPQFRAGFVAIVGRPNVGKSTLTNALIGTKISIVSRKAQTTRH FT RIHGVLTREHEQFVFVDTPGFQTRHGGAMNRMMNRVVTQALADVDVVVHVVEAGKWSEG FT DAKLLPLLPKSRRSILVVSKIDALKNRDELFPFVSKLMALHAYDAVVPVSATKGQQLDQ FT LLDEIAAGLPQGDPMFEEDTLTDRPVRFIAAELVREKIFRLVGDELPYGCTVVIEQWEE FT TERGVRIAACVVVERESHRPILLGAGGMHMKRIATEARQDIAKLLDMPVHLEIYIKVRK FT GWSDREGALRDLGYE" FT misc_feature complement(141581..141604) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(141643..142413) FT /transl_table=11 FT /gene="rnc" FT /locus_tag="BP2431" FT /product="ribonuclease III" FT /EC_number="3.1.26.3" FT /note="Similar to Escherichia coli ribonuclease III Rnc or FT b2567 or z3848 or ecs3433 SW:RNC_ECOLI (P05797) (226 aa) FT fasta scores: E(): 7.5e-39, 50.22% id in 221 aa and to FT Vibrio cholerae ribonuclease III Rnc or Vc2461 TR:Q9KPB2 FT (EMBL:AE004316) (225 aa) fasta scores: E(): 7.4e-39, 50.46% FT id in 216 aa" FT /db_xref="GOA:Q7VW39" FT /db_xref="HSSP:1JFZ" FT /db_xref="InterPro:IPR011907" FT /db_xref="UniProtKB/Swiss-Prot:Q7VW39" FT /protein_id="CAE42703.1" FT /translation="MTAMSLATLETRLDHRFGDKALLEQALTHRSHGARHNERLEFLGD FT SVLNFVVAAMLFERYGKLDEGDLSRLRANLVKQASLADIAQRLDLSQYLRLGEGELKSG FT GFRRPSILADTVEALFGAVFLDAGFEAARRVIVRQYQPVMAHVDPKTLGKDAKTLLQEF FT LQGRKLALPQYTVVATHGAAHSQQFEVECAIPALEIKIVAPGASRRAAEQSAAKVALEA FT AQAVLPAARAARKSGKARKTAQLSLPVAVAQEVK" FT misc_feature complement(141745..141948) FT /note="HMMPfam hit to PF00035, Double-stranded RNA binding FT motif" FT misc_feature complement(142030..142302) FT /note="HMMPfam hit to PF00636, RNase3 domain." FT misc_feature complement(142276..142302) FT /note="ScanRegExp hit to PS00517, Ribonuclease III family FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(142410..143294) FT /transl_table=11 FT /gene="lep" FT /locus_tag="BP2432" FT /product="signal peptidase I" FT /EC_number="3.4.21.89" FT /note="Previously sequenced Bordetella pertussis leader FT peptidase Lep TR:Q9RN42 (EMBL:AF188620) (294 aa) fasta FT scores: E(): 1.9e-121, 100% id in 294 aa. Highly similar to FT Escherichia coli signal peptidase I LepB or b2568 FT SW:LEP_ECOLI (P00803) (324 aa) fasta scores: E(): 3.7e-22, FT 41.81% id in 342 aa, and to" FT /db_xref="GOA:Q9RN42" FT /db_xref="HSSP:1KN9" FT /db_xref="InterPro:IPR019533" FT /db_xref="UniProtKB/TrEMBL:Q9RN42" FT /protein_id="CAE42704.1" FT /translation="MSWNFALILFVLLVITGVIWGLDLALFRKRRERRAQAAAAQVDAA FT GITDAEQAGRERREAIDAARRAPWWIEYAVSFFPVILFVFVLRSFVVEPFHIPSGSMLP FT TLQSGDLILVNKFSYGIRLPIIDRKIIETGSLERGDVVVFRYPVDTDVDYIKRIVGLPG FT DQVAYLDKKLYINGKLVPHERDGDYFEPDRVSYIAQYKEKLGEVEHKILLDEQKIQDFG FT PIWKFPSIQNCQYARNGVRCTVPPGHYFAMGDNRDNSADSRYWGFVPDGNIVGKAFFVW FT MNFSDLSRIGRFH" FT misc_feature complement(142470..143138) FT /note="HMMPfam hit to PF00461, Signal peptidase I" FT misc_feature complement(142509..142550) FT /note="ScanRegExp hit to PS00761, Signal peptidases I FT signature 3." FT misc_feature complement(142791..142829) FT /note="ScanRegExp hit to PS00760, Signal peptidases I FT lysine active site. Confirmed by InterPro eMOTIF pattern FT match." FT misc_feature complement(142977..143000) FT /note="ScanRegExp hit to PS00501, Signal peptidases I FT serine active site." FT misc_feature complement(join(143019..143084,143214..143279)) FT /note="2 probable transmembrane helices predicted for FT BP2432 by TMHMM2.0 at aa 5-27 and 70-92" FT misc_feature complement(143232..143294) FT /note="Signal peptide predicted for BP2432 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.977) with cleavage site FT probability 0.964 between residues 21 and 22" FT CDS complement(143317..145110) FT /transl_table=11 FT /gene="lepA" FT /locus_tag="BP2433" FT /product="GTP-binding protein" FT /note="Similar to Bordetella pertussis GTP-binding protein FT LepA SW:LEPA_BORPE (P56865) (597 aa) fasta scores: E(): 0, FT 99.83% id in 597 aa and to Escherichia coli GTP-binding FT protein LepA or b2569 or z3851 or ecs3435 SW:LEPA_ECOLI FT (P07682) (599 aa) fasta scores: E(): 4.3e-157, 66.83% id in FT 594 aa" FT /db_xref="GOA:P56865" FT /db_xref="HSSP:1N0U" FT /db_xref="InterPro:IPR004161" FT /db_xref="UniProtKB/Swiss-Prot:P56865" FT /protein_id="CAE42705.1" FT /translation="MQHIRNFSIIAHIDHGKSTLADRLIHRCGGLAEREMSAQVLDSMD FT IERERGITIKAQTASLQYKSQDGTVYNLNLIDTPGHVDFSYEVSRSLSACEGALLVVDA FT SQGVEAQTVANCYTAIELGMEVLPVLNKMDLPQADPEAARQEVEDVIGIDASEAVLASA FT KTGMGIDEILESIVARVPPPKGDPSAPLQALIIDSWFDNYVGVVMLVRIVNGVLKPKDK FT ILLMASHATHLCEQIGVFTPKSQPRPELSAGEVGFVIAGIKELEHAKVGDTITLAGKPA FT AEPLPGFKEVKPQVFAGLYPVESSEYDQLRDSLEKLKLNDAALMFEPEVSQALGFGFRC FT GFLGLLHMEIVQERLEREFDMDIITTAPSVVYEVEQRDGTVVTIESPSRMPEIAKIADI FT REPIVKVTLFMPQEYVGPVMTLCNNKRGVQLNMSYHGRQVHLTYEIPLAEIVLDFFDKL FT KSVSRGYASMDYEFVEYRSADVVKVDLLINGDRVDALAMIAHRNNARYRAREVVSRMRG FT LIPRQMFDVAIQAAIGAEVIARENVKALRKNVLAKCYGGDISRKKKLLEKQKAGKKRMK FT QVGSVEIPQEAFLAILQVEDK" FT misc_feature complement(143986..145107) FT /note="HMMPfam hit to PF00009, Elongation factor Tu family" FT misc_feature complement(144940..144987) FT /note="ScanRegExp hit to PS00301, GTP-binding elongation FT factors signature. Confirmed by InterPro eMOTIF pattern FT match." FT misc_feature complement(145057..145080) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(145241..146728) FT /transl_table=11 FT /gene="mucD" FT /locus_tag="BP2434" FT /product="serine protease" FT /note="Similar to Pseudomonas aeruginosa serine protease FT MucD or Pa0766 TR:Q57155 (EMBL:U49151) (474 aa) fasta FT scores: E(): 1.4e-63, 45.88% id in 486 aa and to FT Azotobacter vinelandii MucD TR:Q44476 (EMBL:U30799) (473 FT aa) fasta scores: E(): 2.4e-47, 37.89% id in 504 aa" FT /db_xref="GOA:Q7VW38" FT /db_xref="InterPro:IPR011782" FT /db_xref="UniProtKB/TrEMBL:Q7VW38" FT /protein_id="CAE42706.1" FT /translation="MKAITVSNLFFRRFGAAALVAFMAVTAAGTQVQAQTQVAPPAVAL FT PDFTGIVEKVEPAVVNIRTTATVPVRGGPGGGNDPYELFRWFFGPDFQPPGPAPGQRRK FT QPQPQPEERTIPRGVGSGFFISADGYILTNNHVISDATDIYVTLTDGREFKAKVIGSDD FT RTDVALIKIDAKDMTPLTIGDPKTLKKGQWVLAIGSPFGLDSTVTAGIVSAIGRDTGEY FT LPFIQTDVAVNPGNSGGPLLNLQGEAVGINSQIISRSGGFMGISLAIPIDEAMRVVDQL FT RATGKVTRGRIGVQIGEVGKDVADAIGLPRAEGALVSSVEAEGPAESAGVQPGDVILKF FT NGEPIKRWSDLPRIVGETKPGTSAKMDVWRKGRNVTLSVKVAELKSDRSAATADEGKQA FT EPTAENHLGLGVVDVPSDMQRKLRIKGGAQVRVAEGAAAQAGLQEGDIVLAVNDTDVTD FT AAQFNKLVSRLDKKKAAGLLVRRGDQTQWVAVQPASK" FT misc_feature complement(145283..145540) FT /note="HMMPfam hit to PF00595, PDZ domain (Also known as FT DHR or GLGF)." FT misc_feature complement(145616..145891) FT /note="HMMPfam hit to PF00595, PDZ domain (Also known as FT DHR or GLGF)." FT misc_feature complement(145895..146368) FT /note="HMMPfam hit to PF00089, Trypsin" FT misc_feature complement(146219..146260) FT /note="ScanRegExp hit to PS00584, pfkB family of FT carbohydrate kinases signature 2." FT misc_feature complement(146627..146728) FT /note="Signal peptide predicted for BP2434 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.952 between residues 34 and 35" FT misc_feature complement(146636..146701) FT /note="1 probable transmembrane helix predicted for BP2434 FT by TMHMM2.0 at aa 9-31" FT CDS complement(146766..147824) FT /transl_table=11 FT /gene="mucB" FT /gene_synonym="rseB" FT /locus_tag="BP2435" FT /product="putative sigma factor regulatory protein" FT /note="Similar to many regulators of rpoE/algU which is FT located upstream, including: Azotobacter vinelandii MucB FT TR:Q9RCH6 (EMBL:U22660) (317 aa) fasta scores: E(): FT 4.7e-15, 32.11% id in 327 aa and Escherichia coli sigma-e FT factor regulatory protein RseB precursor SW:RSEB_ECOLI FT (P46186) (318 aa) fasta scores: E(): 9.5e-10, 25.32% id in FT 308 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VW37" FT /protein_id="CAE42707.1" FT /translation="MTPLLYMRRPALGRMTWRQRQTAGLAAMAVLMGLMAIYARPVRAA FT APAVPEDPVLLLSSIQQAARKQDYAGVFMYQQGESIQSSRLVHVLDGTGERERLEILDG FT QPREYLRHNEDVQCLIPERKTVLLERRRGDRFPGLLLGDPAGLAENYHIRAESQLHRVA FT DRQCRLITVEPRDALRYGYRLCADVATNLLLKAQTLDAARRVVEQVSFTSIRLGGDVDP FT AMLTSRWSTRDWRVLEPVMKPVDLAAQGWRITAPKGFSAVLQVARSMGPATVNQLVLSD FT GLAAISVFIEPYDSRRHAHPPEGLARRGAINIYGTRIADFWLTALGEVPAGTLEQLAET FT TEYVPVDAAKQQ" FT misc_feature complement(147693..147827) FT /note="Signal peptide predicted for BP2435 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.959 between residues 45 and 46" FT misc_feature complement(147708..147758) FT /note="1 probable transmembrane helix predicted for BP2435 FT by TMHMM2.0 at aa 23-40" FT CDS complement(147824..148333) FT /transl_table=11 FT /locus_tag="BP2436" FT /product="putative membrane protein" FT /note="no significant database hits" FT /db_xref="GOA:Q7VW36" FT /db_xref="HSSP:1OR7" FT /db_xref="InterPro:IPR005572" FT /db_xref="UniProtKB/TrEMBL:Q7VW36" FT /protein_id="CAE42708.1" FT /translation="MAVMQTAAKSLTAESSWEESVSAWMDGEGSEDFFPEMSHPHGRQT FT WDTYHLIGDALRNADLAVSPSAQFQARLARALEAELPIVAAPRRRSPLRLGLSGLAVAA FT AVATVAWVAHPYLTGAPTGETRVLADATPASAGDDAGLRDYLEAHRQVAGPSAVRQVSF FT DAGAGR" FT misc_feature complement(147983..148048) FT /note="1 probable transmembrane helix predicted for BP2436 FT by TMHMM2.0 at aa 95-117" FT CDS complement(148337..148936) FT /transl_table=11 FT /gene="sigE" FT /gene_synonym="rpoE" FT /gene_synonym="algT" FT /gene_synonym="algU" FT /locus_tag="BP2437" FT /product="RNA polymerase sigma factor" FT /note="Similar to many RNA polymerase sigma factors FT including: Pseudomonas aeruginosa AlgU or AlgT or Pa0762 FT SW:RPSH_PSEAE (Q06198) (193 aa) fasta scores: E(): 1.3e-40, FT 63.02% id in 192 aa and to Escherichia coli RpoE or SigE or FT b2573 or z3855 or ecs3439 SW:RPOE_ECOLI (P34086) (191 aa) FT fasta scores: E(): 3.2e-37, 55.49% id in 191 aa" FT /db_xref="GOA:Q7VW35" FT /db_xref="HSSP:1OR7" FT /db_xref="InterPro:IPR007627" FT /db_xref="UniProtKB/TrEMBL:Q7VW35" FT /protein_id="CAE42709.1" FT /translation="MSERDVDAELVARVQRGDKKAFDLLVLKYQRKILRLLARMIRDPA FT EIEDVAQEAFIKAYRALPQFRGDSAFYTWLYRIAINTARNWLASSGRRPSAPNAIETED FT GETFNETDNLTDISTPESMAATREIAETVNAAIEELPEELRTAIVLREIEGMSYEDIAQ FT SMDCPIGTVRSRIFRAREAIASRLRPLLDTDAERRW" FT misc_feature complement(148406..148471) FT /note="Predicted helix-turn-helix motif with score 1084 FT (+2.88 SD) at aa 156-177, sequence MSYEDIAQSMDCPIGTVRSRIF" FT misc_feature complement(148667..148834) FT /note="HMMPfam hit to PF00776, Sigma-70 factor (ECF FT subfamily)" FT misc_feature complement(148703..148798) FT /note="ScanRegExp hit to PS01063, Sigma-70 factors ECF FT subfamily signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS complement(148933..149433) FT /transl_table=11 FT /locus_tag="BP2438" FT /product="putative integral membrane protein" FT /note="weakly similar to Gallus gallus transport associated FT protein 2 Tap2 TR:O73903 (EMBL:AL023516) (701 aa) fasta FT scores: E(): 1.6, 32.21% id in 149 aa and to Streptomyces FT coelicolor putative integral membrane protein Sc3c9.20C FT TR:CAC42759 (EMBL:AL592262) (618 aa) fasta scores: E(): FT 3.8, 32.94% id in 173 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VW34" FT /protein_id="CAE42710.1" FT /translation="MNPDGGIFDNRWHLRLPVRVPALAVALGLLAMLAAAGSAAVALVQ FT LQWLAPLSAGMLAVAAGGLGGLLWLRGSRGGAPALCAAPVPGGWRVLGGRGWMQARLLA FT VRQGPLWLRLELGLDAEAGSRVTNSKIICTVWRPALPPGHWRRLRLMATAAHVQAATSW FT GAS" FT misc_feature complement(join(149224..149289,149305..149370)) FT /note="2 probable transmembrane helices predicted for FT BP2438 by TMHMM2.0 at aa 21-43 and 48-70" FT misc_feature complement(149260..149379) FT /note="ScanRegExp hit to PS00041, Bacterial regulatory FT proteins, araC family signature." FT CDS complement(149435..150664) FT /transl_table=11 FT /gene="fabF" FT /gene_synonym="fabJ" FT /locus_tag="BP2439" FT /product="3-oxoacyl-[acyl-carrier-protein] synthase II" FT /EC_number="2.3.1.41" FT /note="Highly similar to Escherichia coli FT 3-oxoacyl-[acyl-carrier-protein] synthase II FabF or FabJ FT or b1095 or z1734 or ecs1473 SW:FABF_ECOLI (P39435) (412 FT aa) fasta scores: E(): 8.2e-99, 58.88% id in 411 aa and to FT Neisseria meningitidis 3-oxoacyl-[acyl-carrier-protein] FT synthase II FabF or Nma0044 TR:Q9JX65 (EMBL:AL162752) (415 FT aa) fasta scores: E(): 6.4e-109, 65.61% id in 410 aa" FT /db_xref="GOA:Q7VW33" FT /db_xref="HSSP:1KAS" FT /db_xref="InterPro:IPR018201" FT /db_xref="UniProtKB/TrEMBL:Q7VW33" FT /protein_id="CAE42711.1" FT /translation="MKRRVVITGLGIVSPVGNDIASAWDNIVNGRSGISRISRFDPTPL FT TTHIAGEVKDFDVTQYMPAKEARQMDTFIHYGLAAGMQAWRDCGLEVTETNAERIGVIV FT GSGIGGLPRIEETQTEMLAKGPRRISPFFVPASLINLISGQLSIAYGMKGPSYAVVSAC FT TTGLHCIGDAARLIEYGDADVMLAGGAESTVSPLGIGGFAAMRALSTRNDDPTTASRPW FT DRDRDGFVLGEGAGVLVLEEYEHAKKRGARIYGELAGYGMSSDAHHITAPDKDGPRRGI FT LNALRNGGINADEVSYVNAHGTSTPLGDKNETDALKLAFGDHASKLVVNSTKSMTGHLL FT GAAGGIEAVFTTLAVHNQISPPTINIFNQDPECDLDYCANEARPMKIEIGLSNSFGFGG FT TNGSMAVRRV" FT misc_feature complement(149441..150652) FT /note="HMMPfam hit to PF00109, Beta-ketoacyl synthase, FT N-terminal domain" FT misc_feature complement(150155..150205) FT /note="ScanRegExp hit to PS00606, Beta-ketoacyl synthases FT active site." FT misc_feature complement(150602..150664) FT /note="Signal peptide predicted for BP2439 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.610) with cleavage site FT probability 0.430 between residues 21 and 22" FT CDS complement(150854..151093) FT /transl_table=11 FT /gene="acpP" FT /locus_tag="BP2440" FT /product="acyl carrier protein" FT /note="Highly similar to Vibrio harveyi acyl carrier FT protein AcpP SW:ACP_VIBHA (P55337) (76 aa) fasta scores: FT E(): 1.7e-18, 82.19% id in 73 aa and to Ralstonia FT solanacearum probable acyl carrier protein AcpP TR:CAD14755 FT (EMBL:AL646062) (79 aa) fasta scores: E(): 1.5e-18, 82.05% FT id in 78 aa" FT /db_xref="GOA:Q7VW32" FT /db_xref="HSSP:1ACP" FT /db_xref="InterPro:IPR006162" FT /db_xref="UniProtKB/Swiss-Prot:Q7VW32" FT /protein_id="CAE42712.1" FT /translation="MESIEQRVKKIVAEQLGVNEAEIKNESSFLDDLGADSLDMVELVM FT ALEDEFETEIPDEEAEKITTVQQAIDYINSHGKQ" FT misc_feature complement(150866..150913) FT /note="ScanRegExp hit to PS00038, Myc-type, FT 'helix-loop-helix' dimerization domain signature." FT misc_feature complement(150875..151078) FT /note="HMMPfam hit to PF00550, Phosphopantetheine FT attachment site" FT misc_feature complement(150953..151000) FT /note="ScanRegExp hit to PS00012, Phosphopantetheine FT attachment site. Confirmed by InterPro eMOTIF pattern FT match." FT CDS complement(151276..152028) FT /transl_table=11 FT /gene="fabG" FT /locus_tag="BP2441" FT /product="3-oxoacyl-[acyl-carrier protein] reductase" FT /EC_number="1.1.1.100" FT /note="Highly similar to Escherichia coli FT 3-oxoacyl-[acyl-carrier protein] reductase FabG or b1093 FT SW:FABG_ECOLI (P25716) (244 aa) fasta scores: E(): 1.4e-51, FT 65.28% id in 242 aa and to Vibrio cholerae FT 3-oxoacyl-[acyl-carrier protein] reductase FabG or Vc2021 FT SW:FABG_VIBCH (Q9KQH7) (244 aa) fasta scores: E(): 2.9e-52, FT 64.05% id in 242 aa" FT /db_xref="GOA:Q7VW31" FT /db_xref="HSSP:1Q7B" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VW31" FT /protein_id="CAE42713.1" FT /translation="MEKTSTELQGKIALVTGATRGIGRAIAQELAARGATVVGTATSEA FT GAQAITEALAAQGGRGVVLDVTDAQACEALIEQLGKDGGGPHILVNNAGITRDTLAMRM FT KDDDWSAVIDTNLAAVFRLSRAVLRGMMKARWGRIINITSVVGASGNAGQANYAAAKAG FT VAGMARALARELGSRNITVNCVAPGFIDTDMTRILGEDQTAALLQQIPLGRLGAPADIA FT HAVAFLAGPQAGYITGTTLHVNGGMYMQ" FT misc_feature complement(151300..151392) FT /note="HMMPfam hit to PF00678," FT misc_feature complement(151450..151998) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT misc_feature complement(151513..151599) FT /note="ScanRegExp hit to PS00061, Short-chain FT dehydrogenases/reductases family signature." FT CDS complement(152030..152965) FT /transl_table=11 FT /gene="fabD" FT /locus_tag="BP2442" FT /product="malonyl CoA-acyl carrier protein transacylase" FT /EC_number="2.3.1.39" FT /note="Highly similar to Escherichia coli malonyl CoA-acyl FT carrier protein transacylase FabD or TfpA or b1092 FT SW:FABD_ECOLI (P25715) (308 aa) fasta scores: E(): 2.9e-55, FT 58.36% id in 305 aa and to Salmonella typhimurium malonyl FT CoA-acyl carrier protein transacylase FabD or Stm1194 FT SW:FABD_SALTY (O85140) (308 aa) fasta scores: E(): 6.9e-56, FT 59.01% id in 305 aa" FT /db_xref="GOA:Q7VW30" FT /db_xref="InterPro:IPR004410" FT /db_xref="UniProtKB/TrEMBL:Q7VW30" FT /protein_id="CAE42714.1" FT /translation="MKLAFVFPGQGSQSVGMLDAWAGNAAVADVVARASAALGQDLGAL FT MAQGPAQQLNLTTNTQPAMLTAGAACFAAWRAAGGPMPEVMAGHSLGEYAALTAAGALA FT LEDAVRLVRVRADAMQAAVPVGAGAMAAVLGLDDDAVRAACQQAAQGEVVEAVNFNAPA FT QVVIAGHKAAVERACEAAKAAGAKRALLLPVSAPFHSSLLKPAAEVLQGALAGVEVSAP FT QVPVLNNVDVATPAEPAAIRDALVRQAWHPVRWVETLRAMKELGVTHVIECGPGKVLTG FT LTKRIDADLTGIAITDPASLEAALAAVNGN" FT misc_feature complement(152042..152959) FT /note="HMMPfam hit to PF00698, Acyl transferase domain" FT CDS complement(153047..154033) FT /transl_table=11 FT /gene="fabH" FT /locus_tag="BP2443" FT /product="3-oxoacyl-[acyl-carrier-protein] synthase III" FT /note="Similar to many involved in fatty acid biosynthesis FT including: Neisseria meningitidis putative FT 3-oxoacyl-[acyl-carrier-protein] synthase III FabH or FT Nma0538 TR:Q9JW56 (EMBL:AL162753) (320 aa) fasta scores: FT E(): 5.9e-69, 57.45% id in 322 aa, Rhodobacter capsulatus FT 3-oxoacyl-[acyl-carrier-protein] synthase III FabH FT SW:FABH_RHOCA (P30790) (324 aa) fasta scores: E(): 1.2e-60, FT 52.45% id in 326 aa and to Escherichia coli FT 3-oxoacyl-[acyl-carrier-protein] synthase III FabH or b1091 FT or z1730 or ecs1469 SW:FABH_ECOLI (P24249) (317 aa) fasta FT scores: E(): 1.4e-59, 50.77% id in 321 aa" FT /db_xref="GOA:Q7VW29" FT /db_xref="InterPro:IPR016038" FT /db_xref="UniProtKB/Swiss-Prot:Q7VW29" FT /protein_id="CAE42715.1" FT /translation="MEKAMKYAKIAGSGGYLPERVVTNDDLAAELATRQISTSDEWIVE FT RTGIRQRHLAERGVTTSQLATEAARRAMDDAGVQADEIDMIIVATSTPDYVFPSTACLV FT QANLGAKGGAAFDVQAVCSGFVYAMTTADNFIRAGRARCALVIGAEVFSRILDWNDRGT FT CVLFGDGAGAVVLKAADEPGILAAHLHADGSQTKILCAAGNVAYGDVTGDPFLRMDGQA FT VFKQAVTVLDRSARDVCAEAGVEVDDIDWLIPHQANVRILNFLARKLRVPTERVVITMD FT QHANTSAASVPLALDVARRDGRVKPGQLVLMQGVGGGFTWGSVLARM" FT CDS complement(154033..155091) FT /transl_table=11 FT /locus_tag="BP2444" FT /product="putative fatty acid synthesis protein" FT /note="Similar to many involved in fatty acid biosynthesis FT including: Neisseria meningitidis fatty acid/phospholipid FT synthesis protein Nmb1913 TR:Q9JXR8 (EMBL:AE002540) (351 FT aa) fasta scores: E(): 6.8e-60, 48.57% id in 350 aa, FT Salmonella typhimurium fatty acid/phospholipid synthesis FT protein PlsX Stm1192 SW:PLSX_SALTY (O85138) (359 aa) fasta FT scores: E(): 7.5e-51, 44.94% id in 336 aa and to FT Escherichia coli fatty acid/phospholipid synthesis protein FT PlsX or b1090 SW:PLSX_ECOLI (P27247) (356 aa) fasta scores: FT E(): 1.3e-50, 44.94% id in 336 aa" FT /db_xref="GOA:Q7VW28" FT /db_xref="InterPro:IPR012281" FT /db_xref="UniProtKB/Swiss-Prot:Q7VW28" FT /protein_id="CAE42716.1" FT /translation="MIRIAIDCMGGDFGLPVTIPAAIEFARQFPDTRLLLVGLPDAIEA FT ALAERRDAPRDRLDIVPATEVVSMDDPVEVALRRKKDSSMRLAAQAVKDGRADACISAG FT NTGAWMAISRYVLKTLDGIDRPAIATSIPNQTGRATTVLDLGANVDCSAEHLLQFAIMG FT AALSQAVDHRDRPTVGLLNIGEEIIKGNEVVKEAAELLRASPLNFYGNVEGNDIFKGTV FT DVVVCDGFVGNVVLKSVEGLAKMLSSVIREEFKRNFITLLAGAFAKPVLNRLRNRVDNR FT RYNGAALLGLRGVVIKSHGSADAYAFGFALQRAREAVASKLLERTAQTVAQITKRVQSG FT EAVAPGAAGDTA" FT misc_feature complement(154117..155088) FT /note="HMMPfam hit to PF02504, Fatty acid synthesis FT protein" FT CDS complement(155148..155330) FT /transl_table=11 FT /gene="rpmF" FT /locus_tag="BP2445" FT /product="50s ribosomal protein l32" FT /note="Similar to Neisseria meningitidis 50s ribosomal FT protein l32 RpmF or Nma0544 SW:RL32_NEIMA (Q9JW52) (58 aa) FT fasta scores: E(): 1e-15, 70.69% id in 58 aa and FT Pseudomonas aeruginosa 50s ribosomal protein l32 RpmF or FT Pa2970 SW:RL32_PSEAE (Q9HZN4) (59 aa) fasta scores: E(): FT 2.1e-13, 64.4% id in 59 aa" FT /db_xref="GOA:Q7VW27" FT /db_xref="InterPro:IPR002677" FT /db_xref="UniProtKB/Swiss-Prot:Q7VW27" FT /protein_id="CAE42717.1" FT /translation="MAVQQNKKSPSKRGMHRSHDFLVNPATAIEPNTGETHLRHHISPN FT GFYRGRKVLKTKADE" FT CDS complement(155382..155975) FT /transl_table=11 FT /locus_tag="BP2446" FT /product="conserved hypothetical protein" FT /note="Weakly similar to Neisseria meningitidis FT hypothetical protein Nma0545 TR:Q9JW51 (EMBL:AL162753) (167 FT aa) fasta scores: E(): 2e-07, 30.38% id in 181 aa and to FT Escherichia coli hypothetical protein YceD or b1088 or FT z1727 or Ecs1466 SW:YCED_ECOLI (P14189) (173 aa) fasta FT scores: E(): 3.7e-07, 39.82% id in 113 aa" FT /db_xref="InterPro:IPR003772" FT /db_xref="UniProtKB/TrEMBL:Q7VW26" FT /protein_id="CAE42718.1" FT /translation="MGSGTDAQNAQSHIDAFMFARQAKRLEGSIPLMRLARFMEGLPEQ FT SGGEAGLARWAVEGGTGQGSSRTGHPISGQPLLRLRVRAAPMLVCQRCNQPFVYPVDNT FT VVLQLVKSEEDLDEDLSETQDEDFADDLPEKVVGSHNFDLLAQVEDELILSVPYVPRHD FT VCPGAQAESGEASQEPAVKRPSPFAVLEQLKHKD" FT CDS 156084..156683 FT /transl_table=11 FT /locus_tag="BP2447" FT /product="conserved hypothetical protein" FT /note="Similar to many including: Pseudomonas aeruginosa FT hypothetical protein Pa2972 TR:Q9HZN2 (EMBL:AE004723) (192 FT aa) fasta scores: E(): 3.5e-27, 48.14% id in 189 aa and FT Escherichia coli hypothetical protein YceF or b1087 FT SW:YCEF_ECOLI (P27244) (194 aa) fasta scores: E(): 3.6e-27, FT 46.11% id in 193 aa" FT /db_xref="GOA:Q7VW25" FT /db_xref="InterPro:IPR003697" FT /db_xref="UniProtKB/Swiss-Prot:Q7VW25" FT /protein_id="CAE42719.1" FT /translation="MPAIPPKLILASSSRYRRELLSRLRLPFTAISPDVDETPQPGEAP FT ADLALRLSVAKAMAVAATHPGSVVIGSDQVATVDGEPIGKPGGFERAREQLRRLSGRAV FT EFHSAMAVTDGVHTETADIVTLCRFRTLTDAAIDAYLRAEEPYDTAGSAKAESLGIALM FT DSIRSDDPTAIIGLPLIALTRMLGRFGLDPLTGHPA" FT misc_feature 156099..156665 FT /note="HMMPfam hit to PF02545, Maf-like protein" FT CDS 156680..157390 FT /transl_table=11 FT /locus_tag="BP2448" FT /product="conserved hypothetical protein" FT /note="Similar to many including: Neisseria meningitidis FT hypothetical protein Nmb1908 TR:Q9JXS3 (EMBL:AE002540) (241 FT aa) fasta scores: E(): 2.4e-36, 47.45% id in 236 aa. Also FT similar to many proposed methyltransferases e.g. Chlamydia FT trachomatis SAM-dependent methyltransferase YraL or Ct048 FT TR:O84051 (EMBL:AE001279) (237 aa) fasta scores: E(): FT 1.3e-19, 38.75% id in 240 aa" FT /db_xref="GOA:Q7VW24" FT /db_xref="InterPro:IPR000878" FT /db_xref="UniProtKB/TrEMBL:Q7VW24" FT /protein_id="CAE42720.1" FT /translation="MSGALHLIPVGLGDAPPERWLPADVRALAGRLDTYIAENAKTARA FT FLKLLGTVRPLQEITIHTLTDAVPAGQIEQWLAPLRGGAEIVLVSKAGCPAVADPGAKV FT VAAAHRLGLAVRPWVGPSSILLGLMASGLDGQRFAFHGYAPVDPAERARQLRAWEQHSA FT RHDQTQILIETPYRNGAMFATLLAALRPDTRLCIARALTTGDELVQTRTIADWKRQPAP FT ELDKKPTLFLFLAR" FT misc_feature 156689..157330 FT /note="HMMPfam hit to PF00590, Tetrapyrrole FT (Corrin/Porphyrin) Methylases." FT CDS 157392..158219 FT /transl_table=11 FT /locus_tag="BP2449" FT /product="putative exported hydrolase" FT /note="Similar to Escherichia coli probable FT N-acetylmuramoyl-L-alanine amidase YbjR or b0867 FT SW:YBJR_ECOLI (P75820) (276 aa) fasta scores: E(): 7.3e-29, FT 43.79% id in 274 aa, and to Caulobacter crescentus FT N-acetylmuramoyl-L-alanine amidase Cc2567 TR:Q9A590 FT (EMBL:AE005925) (242 aa) fasta scores: E(): 5.2e-16, 42.55% FT id in 235 aa" FT /db_xref="GOA:Q7VW23" FT /db_xref="InterPro:IPR002502" FT /db_xref="UniProtKB/TrEMBL:Q7VW23" FT /protein_id="CAE42721.1" FT /translation="MPWITRAAPIACLLALAGCAARGPAGLDLDTSITAVSQSSRVRAV FT VLHYTSTGNENSLKILSERKVSAHYLITDTPRPRVYRLVDETRAAWHASISAWYDQSTM FT NSTSIGIELVNPGWTNGEGNWTRGGHGDTDSRHWAPYSDAQIETLIVLLRDIVARHGIA FT PENIVGHSDIAPQRKVDPGPLFPWQRLAQAGLGRWYDEAGAAAHLARLQTEGVPDIAWF FT QGQLARLGYATPQSGVLDTATRNVLAAFQMHYRPARHDGQPDAETAAIMLALR" FT misc_feature 157392..157457 FT /note="Signal peptide predicted for BP2449 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.992) with cleavage site FT probability 0.405 between residues 22 and 23" FT misc_feature 157416..157448 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 157491..157958 FT /note="HMMPfam hit to PF01510, N-acetylmuramoyl-L-alanine FT amidase" FT CDS join(158272..159534,159543..159584,159616..160029) FT /pseudo FT /transl_table=11 FT /locus_tag="BP2450" FT /product="C-terminal region of a putative membrane protein FT (pseudogene)" FT /note="Pseudogene. This is the C-terminal region of FT BP0787.Weakly similar in parts to Ralstonia solanacearum FT probable transmembrane protein rsc2889 or rs00211 FT SWALL:Q8XVE2 (EMBL:AL646072) (740 aa) fasta scores: E(): FT 6.5e-29, 32.68% id in 465 aa" FT /db_xref="PSEUDO:CAE42722.1" FT misc_feature join(159016..159084,159121..159180,159193..159246, FT 159265..159333,159361..159414) FT /note="5 probable transmembrane helices predicted for FT BP2450 by TMHMM2.0 at aa 249-271, 284-303, 308-325, 332-354 FT and 364-381" FT CDS complement(160036..161277) FT /transl_table=11 FT /locus_tag="BP2451" FT /product="putative membrane transport protein" FT /note="Similar to membrane transport proteins including: FT Legionella pneumophila putative transport protein TR:Q9RG52 FT (EMBL:AF153695) (387 aa) fasta scores: E(): 1.4e-13, 26.82% FT id in 369 aa, Pseudomonas aeruginosa probable mfs FT transporter pa3303 TR:Q9HYU1 (EMBL:AE004752) (391 aa) fasta FT scores: E(): 2.4e-09, 30.33% id in 333 aa and Bacillus FT subtilis hexuronate transporter exuT SW:EXUT_BACSU (O34456) FT (422 aa) fasta scores: E(): 1.2e-06, 24.1% id in 419 aa" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7VW22" FT /protein_id="CAE42723.1" FT /translation="MSAGLRVFLFFSLGYLVSYLFRGLNIGFGPTLSAELGLSAADLGT FT LTSLYFLGFALLQIPAGVLLDTWGPRRVNAALLVVAAVGTLVYGLSQGLPGLMVGRLLI FT GAGVSVCLGAAFQALALNYPLARLPLINGLVMAVGGLGGVLVGSPLSWLLNFSTWREVS FT IGMVVVTLCVAALLWFGAPREPARDRPHASLGEQLRGTFVLLRTAHYWRLVSLPVATGG FT VFYGVQSLWVRPYLTDVNMLPAAPAAALVSLLGFAMMGGNVGLGAMARRVERMGLGLYG FT FSGVCLALFILIQLLIVLRAPVPLALLWAGYGVFGSANILVFALLAGEFPRELLGRVAA FT TTNLLTFVSIFVCQVTFGWIVELWPRGDAVYEPGSYPAGGYLAAWGAFLALQIAVALYY FT FWPRRRAASARQGA" FT misc_feature complement(join(160075..160140,160186..160251, FT 160288..160353,160384..160449,160471..160536, FT 160582..160647,160735..160791,160822..160887, FT 160903..160968,160981..161046,161083..161148, FT 161194..161256)) FT /note="12 probable transmembrane helices predicted for FT BP2451 by TMHMM2.0 at aa 7-28, 43-65, 77-99, 103-125, FT 130-152, 162-181, 210-232, 247-269, 276-298, 308-330, FT 342-364 and 379-401" FT CDS complement(161289..162062) FT /transl_table=11 FT /locus_tag="BP2452" FT /product="conserved hypothetical protein" FT /note="Similar to several including: Vibrio cholerae FT hypothetical protein Vc2355 vc2355 TR:Q9KPL2 FT (EMBL:AE004305) (257 aa) fasta scores: E(): 1.3e-51, 51.56% FT id in 256 aa, and to Escherichia coli protein yaaa yaaa or FT b0006 SW:YAAA_ECOLI (P11288) (258 aa) fasta scores: E(): FT 2.5e-51, 52.36% id in 254 aa" FT /db_xref="InterPro:IPR005583" FT /db_xref="UniProtKB/Swiss-Prot:Q7VW21" FT /protein_id="CAE42724.1" FT /translation="MLFLLSPAKKLDYDSPVHVETHTQPLFVDQAAALIKVLKTKSADE FT IAELMSLSPALAELNAGRYGAWKRSFTQANSRQAVLAFNGDVYEGLQADTLSARQLDWA FT QDHVVILSGLYGALRPLDLMQPYRLEMGTRLHTPKGKNLYEYWGSGIAEYLNERQAGAK FT APVIVNLASEEYFKVVDLKTLKARVVQCVFQDWKNGAWKVISFHAKRARGLMARYAIAH FT KVARPEGLQGFDSEGYAYDAAASSADKLVFRRKQA" FT CDS complement(162089..163039) FT /transl_table=11 FT /locus_tag="BP2453" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE42725.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 162089..162120 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(162089..163141) FT misc_feature complement(162125..162658) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(162716..162781) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(163110..163141) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(163138..163920) FT /transl_table=11 FT /locus_tag="BP2454" FT /product="putative oxidoreductase" FT /note="Similar to Alcaligenes eutrophus FT D-beta-hydroxybutyrate dehydrogenase HbdH1 SW:BDHA_ALCEU FT (Q9X6U2) (258 aa) fasta scores: E(): 7.9e-57, 63.84% id in FT 260 aa and to Rhizobium meliloti D-beta-hydroxybutyrate FT dehydrogenase BdhA or Rb1136 or Smb21010 SW:BDHA_RHIME FT (O86034) (258 aa) fasta scores: E(): 1e-45, 54.29% id in FT 256 aa" FT /db_xref="GOA:Q7VW20" FT /db_xref="HSSP:1EDO" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VW20" FT /protein_id="CAE42726.1" FT /translation="MLKGKVAVVTGSTSGIGLGIASALAQQGADIVLNGFGDAADIEKL FT RAGLASQYGVQVRYDGADLSKGEAVRQLVSGAVAELGRIDILVNNAGIQHTALIEDFPA FT DKWDAIIALNLSAVFHGTAAALPHMKKQGWGRIINIASAHGLVASAAKSAYVAAKHGVV FT GLTKVTALETAGMGITANAICPGWVRTPLVEKQITALAAKDGVDQESAARELLGEKQPS FT LQFVTPEQLGGTAVFLASEAAAQITGTTISVDGGWTAR" FT misc_feature complement(163162..163254) FT /note="HMMPfam hit to PF00678," FT misc_feature complement(163348..163908) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT misc_feature complement(163411..163497) FT /note="ScanRegExp hit to PS00061, Short-chain FT dehydrogenases/reductases family signature." FT CDS complement(164009..165235) FT /transl_table=11 FT /locus_tag="BP2455" FT /product="putative membrane efflux protein" FT /note="Similar to Escherichia coli glutathione-regulated FT potassium-efflux system protein KefB or TrkB or b3350 FT SW:KEFB_ECOLI (P45522) (601 aa) fasta scores: E(): 2.2e-55, FT 45.78% id in 380 aa and to Vibrio cholerae FT glutathione-regulated potassium-efflux system protein KefB FT vc2606 TR:Q9KNX4 (EMBL:AE004327) (656 aa) fasta scores: FT E(): 2.8e-53, 46.25% id in 387 aa" FT /db_xref="GOA:Q7VW19" FT /db_xref="InterPro:IPR006153" FT /db_xref="UniProtKB/TrEMBL:Q7VW19" FT /protein_id="CAE42727.1" FT /translation="MELLTILLIAAVLCVPLAQRLGLGAIPGYLLAGGVIGPSGLGLVT FT DVPDIMRVSEWGVVMMLFVIGLELAPKRLWAMRREVFGAGTLQMVVCGALLGAVFGAGL FT RHLAGMGWQAAILCGLSLALSSTAVALRLLEERGLVRTPLGRSALGVLLLQDMAAIPML FT VAAGLLGSDGDSAPSFEAALVAVVVVLACYRLRLLDWAARSQLHELFTAATLLVVLGTA FT QLFDYAGLSAGLGGFLVGMLLAESRHRNELEHTIEPFKGLLLGLFFLAVGMSVNVEEAL FT DYWPYVLAGVVALLSLKALVLYGIARLMGLPHYHRLLYALVLAQGGEFSFVIFNEAWDN FT HLMSLEQRDLLAIVVAISMGAVPIVIRLLERLPGRYGGIGDMAVTPVGFAGSPPPQSAA FT DNEERSGPG" FT misc_feature complement(164108..165235) FT /note="HMMPfam hit to PF00999, Sodium/hydrogen exchanger FT family" FT misc_feature complement(join(164129..164185,164231..164284, FT 164321..164386,164540..164605,164642..164707, FT 164738..164803,164843..164908,164924..164989, FT 165026..165076,165107..165172)) FT /note="10 probable transmembrane helices predicted for FT BP2455 by TMHMM2.0 at aa 21-43, 53-70, 82-104, 109-131, FT 144-166, 176-198, 210-232, 283-305, 317-335 and 350-369" FT misc_feature complement(164840..164926) FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign." FT misc_feature complement(165176..165235) FT /note="Signal peptide predicted for BP2455 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.762) with cleavage site FT probability 0.257 between residues 20 and 21" FT tRNA 165475..165564 FT /note="tRNA Ser anticodon CGA, Cove score 77.54" FT CDS 165961..167346 FT /transl_table=11 FT /gene="alcA" FT /locus_tag="BP2456" FT /product="alcaligin biosynthesis enzyme" FT /note="Previously sequenced in Bordetella bronchiseptica FT alcaligin biosynthesis enzyme AlcA SW:ALCA_BORBR (Q44740) FT (461 aa) fasta scores: E(): 1.4e-197, 100% id in 461 aa. FT Also similar to Escherichia coli L-lysine 6-monooxygenase FT IucD or AerA SW:IUCD_ECOLI (P11295) (425 aa) fasta scores: FT E(): 2.5e-37, 28.97% id in 428 aa" FT /db_xref="GOA:P65199" FT /db_xref="UniProtKB/Swiss-Prot:P65199" FT /protein_id="CAE42728.1" FT /translation="MNREIYDFVAIGIGPFNLSLASLSAPLRGVRTLFLDKKSGFDWHP FT GMLIETSTLQNPFLADLVSLADPRSEYSYLNYCKLTNRIYSYYMRENHYLSRAEYTRYC FT QWVAARLPNLRFGCDVQGVLHDPESHSYLVTGQHTMSGQRFMFRCRKLVLGLGSQPYLP FT ACCDRRAAPFIHSADYLRHKYELQGRASITIVGSGQSAAEVFHDLLRESGRHDYSLAWI FT TRSPRFFQMENTKLTLELISPDYTEYFHDLPEARRQEILTQQNSLYKGINASLINQIYD FT LLDEKVHDGDNRYTLLTNSELRACRYDPLQERFQLDFQHLDCDRPFSHATDGLVLATGY FT SHEIPACINPIHDRIAWNADGSYRIGRNYAIDHEGSEIFVQNTGLLSHGVTNPDLGFCC FT YRNSQILRELTGTEHYRIETRTALQEFSPPADGVLKHRPARRAERRPTVAARPLMDIHR FT ATL" FT CDS 167365..167970 FT /transl_table=11 FT /gene="alcB" FT /locus_tag="BP2457" FT /product="alcaligin biosynthesis protein" FT /note="Previously sequenced in Bordetella bronchiseptica FT AlcB iron siderophore alcaligin biosynthetic protein FT TR:P94254 (EMBL:U61153) (201 aa) fasta scores: E(): FT 7.8e-87, 100% id in 201 aa. Also similar to Escherichia FT coli aerobactin siderophore biosynthesis protein IucB FT SW:IUCB_ECOLI (Q47317) (315 aa) fasta scores: E(): 1.1e-05, FT 24.4% id in 168 aa" FT /db_xref="InterPro:IPR019432" FT /db_xref="UniProtKB/TrEMBL:Q7VW18" FT /protein_id="CAE42729.1" FT /translation="MMTMMATFLDVIDQKARSHYDEGKGLALRSLDPEADAAQLQQWFS FT MDYARFWSMQDSSVHQVRDFYTALCSSGHAGAWLGLHHGRAAFLVECYDPARDQVGEHY FT CVRPGDLGMHLLIAPPTEHIPGFSRAVFALVMRFMFDRLHAARVVVEPDVNNTKIHALN FT LSMGFVYAGLARFREKTASLAFCTRAQFEQAQRQELTQ" FT CDS 167967..169823 FT /transl_table=11 FT /gene="alcC" FT /locus_tag="BP2458" FT /product="alcaligin biosynthesis protein" FT /note="Previously sequenced in Bordetella bronchiseptica FT AlcC iron siderophore alcaligin biosynthesis protein FT TR:P94255 (EMBL:U61153) (618 aa) fasta scores: E(): 0, FT 99.83% id in 618 aa. Also similar to Echerichia coli FT aerobactin siderophore biosynthesis protein IucC FT SW:IUCC_ECOLI (Q47318) (580 aa) fasta scores: E(): 8.9e-46, FT 28.57% id in 595 aa" FT /db_xref="GOA:Q7VW17" FT /db_xref="InterPro:IPR007310" FT /db_xref="UniProtKB/TrEMBL:Q7VW17" FT /protein_id="CAE42730.1" FT /translation="MSRTTPPHPAEIVAHLQPEIWNKVNRLLVRKAISEYAHEWLLEPQ FT RLGSGETPGFERFRLTLADGAQYDFDAQVMAMRHWRIPPESIVKTVAGVPAPLDALQFV FT IEIRDKLGLPVDRLPIYMDEITSTLHGSAYKHGRTTLGAAALARADYQTIETSMIEGHP FT SFVANNGRLGFDAEDYHGYAPEAATPVRLMWLAVHKDNAHFSCLSDMDYDSLMSEELGE FT SAVTDFAARLREQGLHPADYYFMPAHPWQWFNKLSLAFAPYVAQRKIVCLGYGEEQYLA FT QQSIRTFFNISRPGKRYVKTSLSILNMGFMRGLSPYYMAGTPAINEYIHDLISADPWLR FT ANGFRILREVASMGFRNYYYEAAIDTDTPYKKMFSALWRENPLTLIAPGQNLMTMAALL FT HVDPQGRALLPELIQASGLDAGTWLERYVDAYLTPLIHCFYAHDLVFMPHGENVILVIQ FT DGVPVRAFMKDIAEESSILNPQVRLPQAAQRLAADVPEAYKLLTIFVDVFEGYFRHLTQ FT ILVETELMPEHDFWRLVAGRIAAYQQAHPQRLDKYRRYDLFAPDMIHSCLNRLQLANNL FT QMVNLADPIGSFQMAPNLPNPIACFRPSWLGSGEALQTLTAA" FT CDS 169820..170620 FT /transl_table=11 FT /gene="alcD" FT /locus_tag="BP2459" FT /product="hypothetical protein" FT /note="Previously sequenced in Bordetella bronchiseptica FT hypothetical protein AlcD predicted to be involved in the FT iron siderophore alcaligin biosynthesis TR:O52832 FT (EMBL:AJ000061) (267 aa) fasta scores: E(): 3.7e-105, FT 93.63% id in 267 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VW16" FT /protein_id="CAE42731.1" FT /translation="MSWDIAAQTGAGVAQDINRTACSDLDALLALAGSLVPGLDGRIGP FT VSGDIRPGADNRATLRTLQDWWRLRHPEAGSHYLALRCWGLLIWQPIYLGVIAVHCSDI FT APDLDRLGQPVRDGFIAGYILERHEPLRGCLEQRKQAVAAQLRRICATYFRELSQLLRL FT SPRAAACMQADCVLSALLAARANEDKAAVAWAHEQAADWLDRLGIAGHSGYLVYARAGR FT PVLALDRQVCCHHFRRHDGDYCSTCPKLPPAERIARIEADEAAA" FT CDS 170635..171828 FT /transl_table=11 FT /gene="alcE" FT /locus_tag="BP2460" FT /product="putative iron-sulfur protein" FT /note="Previously sequenced in Bordetella bronchiseptica FT AlcE, involved in the iron siderophore alcaligin FT biosynthesis, TR:O52833 (EMBL:AJ000061) (397 aa) fasta FT scores: E(): 7.3e-176, 99.74% id in 397 aa. Also similar to FT BP2804, 71.842% identity in 380 aa overlap." FT /db_xref="GOA:Q7VW15" FT /db_xref="InterPro:IPR017941" FT /db_xref="UniProtKB/TrEMBL:Q7VW15" FT /protein_id="CAE42732.1" FT /translation="MTDIASLAQLQQALSPLHARAYFDEALFVREQEILFRQSALYVGH FT EKSVPEPGDWRRLPQDDGSRILVRNGNEVALLSNVCRHRQAVMLGPIAGGEAMKGNLSV FT TGGNIVCPLHRWTYDGQGRILGAPHFPSTPCLNLSRFPLHNCHGLLFEGPRDPLKDLDV FT LFRRPEFDFSDYVLDHVEVHRCNYNWKTFIEVYLEDYHVGPFHPGLGRFVTCADLSWEF FT GAQYSLQKVGVHDSLEQPGTEVYRGWHDNLMRYRGGRTPDFGAIWVTYFPTHMIELYPH FT VLVLSTLYPKGPQETLNIAEFYYPEEIALFERDFVQAQRAAYMETAVEDDEIGERMDAG FT RLALLRRGVSDSGPYQSPMEDGMLHFHEWYLSNMGEQLGDSAAPHVASTQRPMPFRS" FT misc_feature 170809..171021 FT /note="HMMPfam hit to PF00355, Rieske [2Fe-2S] domain" FT CDS 171896..172870 FT /transl_table=11 FT /gene="alcR" FT /locus_tag="BP2461" FT /product="Transcriptional regulator" FT /note="Previously sequenced Bordetella pertussis AlcR the FT regulator of alcaligin siderophore biosynthesis TR:O52066 FT (EMBL:AF018255) (324 aa) fasta scores: E(): 3.4e-130, 100% FT id in 324 aa" FT /db_xref="GOA:O52066" FT /db_xref="InterPro:IPR018060" FT /db_xref="UniProtKB/TrEMBL:O52066" FT /protein_id="CAE42733.1" FT /translation="MTQPTLPPPPRTRFTVSDFNRMGGSVGFNYRLPGQEGGGAGIENL FT CIAEGRVEECEIRPGITLIVSDVHVYHHYESTSVMTPRFSAIVMLQGQARARLDKQDDV FT RLAAQSGLNALYGDTVAMTGVHPAGQRLRSVNLSVTAPEAADDEYTSEIIWKLMQSSAP FT RLRRWPVPHHLLLSIEHLLECDWDQPLRNMVREGVGTQLLAHALAALQHAPVTHRGLTQ FT RDRQLLERVRERLHEAPGEDHTLDDLARLACMSPSTLRAKFHAVYHRSVFSWLRERRLE FT VAREQLARGWSVQQAAHFVGYRHATNFATAFRERYGVAPSQLG" FT misc_feature 172619..172864 FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family" FT misc_feature 172622..172687 FT /note="Predicted helix-turn-helix motif with score 1966 FT (+5.88 SD) at aa 243-264, sequence HTLDDLARLACMSPSTLRAKFH" FT misc_feature 172730..172855 FT /note="ScanRegExp hit to PS00041, Bacterial regulatory FT proteins, araC family signature." FT CDS 172993..174216 FT /transl_table=11 FT /gene="bcr" FT /locus_tag="BP2462" FT /product="putative drug resistance translocase" FT /note="Previously sequenced in Bordetella bronchiseptica FT Bcr protein TR:O52835 (EMBL:AJ000061) (110 aa) fasta FT scores: E(): 4.8e-35, 96.36% id in 110 aa. Note the FT differing C-termini. Also similar to Escherichia coli FT bicyclomycin resistance protein Bcr or BicR or BicR or Sur FT or SuxA or b2182 SW:BCR_ECOLI (P28246) (396 aa) fasta FT scores: E(): 1.1e-25, 29.41% id in 391 aa" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7VW14" FT /protein_id="CAE42734.1" FT /translation="MSRAASAPSYSLMMVMLGLLSCVAPASIDAYLPAFGALQREFGVP FT QETVQLTLGVYMFCYAAMLLLHGTLSDSLGRRRVVLGALGFYVWGALLATAAPGFGWLL FT AARALQGLSAGAGVVVGQAIIRDCYQGAAAQRSMSYLILVFNLSPALAPVIGGQLAVHH FT GWRSIFFMLGLLAATALTLCAWRLPETLAPAKRQTLSLRGLAAGYREVLRNGNFTAPGL FT AFSLVFAAQGLLIGAAPDFIANVLDLPETNFAYLFVPLVAGAMTGAAIAARHAGRWRDT FT RIIGLAYLLMNGSCLAYAIYFWTALSPALPWAVLPPALFTCGLAMSVPAMTLHILESVP FT ALSGTGASVLGFMQMLAFSIASGWGVPLTYGQPSVLALAMLACVTASALAWAWLQHLSR FT ISAKVQAR" FT misc_feature 172993..173070 FT /note="Signal peptide predicted for BP2462 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.969) with cleavage site FT probability 0.448 between residues 26 and 27" FT misc_feature 173026..173058 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature join(173026..173094,173137..173205,173224..173292, FT 173302..173370,173407..173475,173485..173553, FT 173641..173709,173752..173820,173839..173907, FT 173917..173985,174004..174072,174115..174183) FT /note="12 probable transmembrane helices predicted for FT BP2462 by TMHMM2.0 at aa 12-34, 49-71, 78-100, 104-126, FT 139-161, 165-187, 217-239, 254-276, 283-305, 309-331, FT 338-360 and 375-397" FT CDS 174327..176531 FT /transl_table=11 FT /gene="fauA" FT /locus_tag="BP2463" FT /product="ferric alcaligin siderophore receptor" FT /note="Previously sequenced Bordetella pertussis ferric FT alcaligin siderophore receptor FauA TR:Q9X6A5 FT (EMBL:AF135154) (734 aa) fasta scores: E(): 0, 100% id in FT 734 aa" FT /db_xref="GOA:Q9X6A5" FT /db_xref="InterPro:IPR012910" FT /db_xref="PDB:3EFM" FT /db_xref="UniProtKB/TrEMBL:Q9X6A5" FT /protein_id="CAE42735.1" FT /translation="MPDPAHFSPAHSRRLRFFAHVLHLLGALFTQHALAQEARTGNDIA FT QLPAISVTGREISDLTEGTNAYTTEAMSTATGLTLSPRETPQSVSVVTRQQIEDQGLTD FT TGAILATAPGISVTRSDSNRYSFSARGFTIDNFQFDGLVSPILSQWNYGSTDMDAAIYD FT HVEIVRGATGLMTGSGNPSAAVNFVRKRPLREFAATFNASVGSWDYVRGDADISVPITE FT DGRIRSRLVAAYSQGDSYVHFLDTRRRTFYGVVSADLTPDTVLTTSVEYQHNHSNGFGS FT GFPLFYSDGSRTDFNRSVANNAPWARQDTEATTYFVDLTHRFTNDWKLRAAYSHTDGRY FT LMKHVYRGGYPDRHTGIIAAPPAFSNYDGNLDRDDIHFSLSAPFEAFGLRHEVALGWMS FT IDNHSDIQRYAMVGPAPAIGSFFDWRRAHIQEPSWADTLSPADDVRTKQTGAYLVGRFA FT LAEPLHLIVGDRWSDWKTKQMYFGSRREYRIKNQFTPYAGLTYDINDTYTAYASYTEIF FT QPQNARDTSGGILPPIKSKSYELGLKAAYLEGRLNTSAALFQTRQDNLAQVIPGSSIPG FT FPNMQASRAASGAKVEGIDLEASGQILPDWNIGASYTHFTTKDASGNPINTNHPRSLFK FT LYTTYRLPGALHRLTVGGGVDWQSRMYQAAASPRGNVEVEQDSYALVSLMARFDFNKKL FT SATLNVNNLFDKKYYDQIGFYSQGWWGAPRNVMLNLRAQY" FT misc_feature 176196..176528 FT /note="HMMPfam hit to PF00593, TonB dependent receptor FT C-terminal region" FT CDS 176826..177485 FT /transl_table=11 FT /gene="mar" FT /locus_tag="BP2464" FT /product="possible membrane efflux protein" FT /note="Similar to many proteins involved in multiple FT antibiotic resistance including: Salmonella typhimurium FT multiple antibiotic resistance protein MarC SW:MARC_SALTY FT (Q56068) (221 aa) fasta scores: E(): 6.2e-17, 29.68% id in FT 219 aa and to Escherichia coli multiple antibiotic FT resistance protein MarC SW:MARC_ECOLI (P31123) (221 aa) FT fasta scores: E(): 1.5e-16, 30.18% id in 222 aa. Previously FT sequenced as Bordetella pertussis putative multiple FT antibiotic resistance protein Mar TR:Q9X6A6 (EMBL:AF135154) FT (132 aa) fasta scores: E(): 1.2e-36, 100% id in 111 aa. FT Note the differing N-termini with the previously reported FT Bordetella protein." FT /db_xref="InterPro:IPR002771" FT /db_xref="UniProtKB/TrEMBL:Q7VW13" FT /protein_id="CAE42736.1" FT /translation="MGNFVSEILFGYTTLISIINPLGLAFVFLNKTATLTPEERARLAY FT SVALNAMFLLLVTFFIGAYILHLFGISLEALRVAGGLSVAVSGWAMLNAPEPHPQAQAL FT QQITPSMAREMVFFPLTMPLTTGPGTVAATIALSANRTNELRDFLLASLASVLITMAVA FT ATVYLAYSRAGTLARYLGADGTRIVTRVSAFLLLCVGVQIMLTGLEQFLRPIIGHG" FT misc_feature 176838..177461 FT /note="HMMPfam hit to PF01914, Uncharacterised protein FT family UPF0056" FT misc_feature join(176844..176912,176970..177038,177171..177239, FT 177267..177335,177396..177449) FT /note="5 probable transmembrane helices predicted for FT BP2464 by TMHMM2.0 at aa 13-35, 55-77, 122-144, 154-176 and FT 197-214" FT CDS 178071..178793 FT /transl_table=11 FT /locus_tag="BP2465" FT /product="hypothetical protein" FT /note="Database similarities to the predicted product o FT fthis CDS covers a region defined by the PFAM motif FT PF00990, GGDEF domain, the function of which is unknown. FT Similar in parts to several regulators including: Rhizobium FT meliloti putative response regulator sma2301 TR:AAK65897 FT (EMBL:AE007308) (448 aa) fasta scores: E(): 1e-16, 42.16% FT id in 185 aa, and to Pseudomonas aeruginosa hypothetical FT protein Pa1107 pa1107 TR:Q9I4M8 (EMBL:AE004541) (398 aa) FT fasta scores: E(): 1.1e-16, 38.91% id in 185 aa" FT /db_xref="InterPro:IPR000160" FT /db_xref="UniProtKB/TrEMBL:Q7VW12" FT /protein_id="CAE42737.1" FT /translation="MTGRPPLIMNDQRKSSRASCRASANYLRAEAALPRRRYPQPPVSG FT AATLQELQAQVDTLELENARLRRLALTDDLTGAYNRRYFATMLRDALRERVRGGGLALC FT LFDIDNFKTINDRHGHFAGDYLLRRVALAARRCMRRTSDDLCRVGGDEFAAVLSAPSAS FT AALAQAQRVLDAIRAIAPLDTPHGPRHVTATFGLAWIAPGVSLTWEQAYSDADRALYRA FT KQAGKNRLHLIASRTAGA" FT misc_feature 178257..178757 FT /note="HMMPfam hit to PF00990, GGDEF domain" FT CDS complement(178809..178970) FT /transl_table=11 FT /locus_tag="BP2466" FT /product="hypothetical protein" FT /note="No siginificant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VW11" FT /protein_id="CAE42738.1" FT /translation="MENDPLAIIHIHEDGGATLMGTDYRVEPEGVASMIRQGERFFWIE FT PPVISQEG" FT CDS 179064..179579 FT /transl_table=11 FT /locus_tag="BP2467" FT /product="hypothetical protein" FT /note="Weakly similar to Xylella fastidiosa phage-related FT protein Xf0485 TR:Q9PG17 (EMBL:AE003898) (181 aa) fasta FT scores: E(): 3e-06, 29.18% id in 185 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VW10" FT /protein_id="CAE42739.1" FT /translation="MTPGPRTSPLVFASASIQAIKAGKQRQTRRIVKPQPPPAATLWYC FT DPAHAERWIAATARPDDATPAQTVSKWLVCPYGKPGDLIDLAHESGQPFGRAILMGVRI FT QRLQAINEADAAAEGFAAASRLDEFLPETPPQAAFALAWCERYGARAWAANPWVWVLEF FT RLLNQNGH" FT CDS 179852..180169 FT /transl_table=11 FT /gene="vrg-6" FT /locus_tag="BP2468" FT /product="Virulence protein" FT /note="Previously sequenced Bordetella pertussis virulence FT related protein, Vrg-6 TR:Q45395 (EMBL:M77374) (105 aa) FT fasta scores: E(): 4.2e-36, 100% id in 105 aa" FT /db_xref="UniProtKB/TrEMBL:Q45395" FT /protein_id="CAE42740.1" FT /translation="MKKWFVAAGIGAAGLMLSSAALARVDIGVSIGIPGVVYPAPVYVA FT PAPVYAPPPVVHYPAPVYVRPQVVYPAPVYYGGPRYYKGHRHYDRGHRGHRGHGRGHWR FT D" FT misc_feature 179852..179920 FT /note="Signal peptide predicted for BP2468 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.982 between residues 23 and 24" FT misc_feature join(179861..179920,179933..180001) FT /note="2 probable transmembrane helices predicted for FT BP2468 by TMHMM2.0 at aa 4-23 and 28-50" FT CDS complement(180357..180701) FT /transl_table=11 FT /locus_tag="BP2469" FT /product="hypothetical protein" FT /note="no significant database hits" FT /db_xref="UniProtKB/TrEMBL:Q7VW09" FT /protein_id="CAE42741.1" FT /translation="MNKCVPAINRAISTAKYRLATRPLHFNKGSCFMTSRMIGDFRVRC FT TVVQEEGNQYSVQICTRRVGGNAPEKCWTVPGQVSYQDREDAERTSQQIFERINGVRFN FT GEPEFAHASA" FT CDS complement(180884..182239) FT /transl_table=11 FT /locus_tag="BP2470" FT /product="seryl-tRNA synthetase" FT /EC_number="6.1.1.11" FT /note="Similar to Haemophilus influenzae seryl-tRNA FT synthetase SerS or Hi0110 SW:SYS_HAEIN (P43833) (429 aa) FT fasta scores: E(): 5.9e-49, 54.64% id in 452 aa and to FT Vibrio cholerae seryl-tRNA synthetase Vc1110 TR:Q9KSZ6 FT (EMBL:AE004191) (435 aa) fasta scores: E(): 3.4e-73, 57.08% FT id in 452 aa" FT /db_xref="GOA:Q7VW08" FT /db_xref="InterPro:IPR015866" FT /db_xref="UniProtKB/Swiss-Prot:Q7VW08" FT /protein_id="CAE42742.1" FT /translation="MLDPILLRKDLQTVVDRLKSRGVDFDIARFNELESRRKAVQTETE FT SQQARRNALAKQIGQLKGKGAPEAEVQAVMAESQALPARLKALEDELAQTQAQLNDLLM FT SVPNLPHASVPQGASSDENVEVRRWLPGAADERGIPAALGFEVRDHVAVGEPLGLDFDL FT AARLSGARFSFMRGQMARLHRALAQFMLDLQTGTHGYTECYTPYIVNSSTLFGTGQLPK FT FKDDMFFVTKGGGDDEPKVDEQGNPLAREDQYLISTSEITLTSVVRETIVAGADLPLRL FT TAHTPCFRSEAGSGGRDTRGMIRQHQFDKVEMVQIAHPEHSYEALEEMVGHAERVLQLL FT ELPYRVMLLCTGDMGFGSAKTYDLEVWLPAQDTWREISSVSNCETFQARRMQARFRNAQ FT NKPEYVHTLNGSGLAVGRALVAVLENCQQADGSVRVPAVLQPYMGGLTVLEP" FT misc_feature complement(180908..182032) FT /note="HMMPfam hit to PF00587, tRNA synthetase class II (G, FT H, P, S and T)" FT misc_feature complement(181304..181378) FT /note="ScanRegExp hit to PS00179, Aminoacyl-transfer RNA FT synthetases class-II signature 1. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature complement(182099..182239) FT /note="HMMPfam hit to PF02403, Seryl-tRNA synthetase FT N-terminal domain" FT CDS complement(182286..183626) FT /transl_table=11 FT /locus_tag="BP2471" FT /product="conserved hypothetical protein" FT /note="Similar to Burkholderia solanacearum conserved FT hypothetical protein Rsc2338 TR:CAD16045 (EMBL:AL646069) FT (449 aa) fasta scores: E(): 1e-98, 67.92% id in 452 aa, and FT to Salmonella enterica subspenterica serovar Typhi FT conserved hypothetical protein Sty0960 TR:CAD05362 FT (EMBL:AL627268) (447 aa) fasta scores: E(): 8.5e-76, 54.34% FT id in 449 aa" FT /db_xref="GOA:Q7VW07" FT /db_xref="HSSP:1J7K" FT /db_xref="InterPro:IPR003959" FT /db_xref="UniProtKB/TrEMBL:Q7VW07" FT /protein_id="CAE42743.1" FT /translation="MSNDLFASDPAHRPYVPLAERLRPRTLSDVVGQSHLLGPDKPLRV FT AFDSGRPHSMIFWGPPGVGKTTLARLMADGFDAQFIAISAVLGGVKDIRDAVVTAQVAQ FT GQGRRTILFVDEVHRFNKSQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRARVYV FT LQSLSAEELMQLVDRAVAALNEGLEDGQQIRFEAEAREQLAAWADGDARRLISAVEVVA FT ESAQAAGRDSVDAAWLETSLSQNLRRFDKGGDAFYDQISALHKSVRGSDPDAALYWLAR FT MLDGGADPKYLARRLVRMAIEDIGLADPRATELAVNGADIYERLGSPEGELALAQAVVY FT MACAAKSNAVYNAYNAARKFAAEHGSAPVPLHLRNAPTKLMKQLGHGKAYRYAHDQPHA FT YAADEQYFPDGLNPTFYRPTDRGLEAKIQQKLAFLDELDAQERARKR" FT misc_feature complement(182937..183467) FT /note="HMMPfam hit to PF00004, ATPase family associated FT with various cellular activities (AAA)" FT misc_feature complement(183429..183452) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(183728..184360) FT /transl_table=11 FT /locus_tag="BP2472" FT /product="putative exported protein" FT /note="Similar to Neisseria meningitidis outer-membrane FT lipoproteins carrier protein precursor LolA or Nmb0622 FT SW:LOLA_NEIMB (P57068) (207 aa) fasta scores: E(): 3.4e-19, FT 40.6% id in 197 aa and to Xylella fastidiosa outer-membrane FT lipoproteins carrier protein precursor Lola or Xf1452 FT SW:LOLA_XYLFA (Q9PDC7) (210 aa) fasta scores: E(): 4.8e-17, FT 37.18% id in 199 aa" FT /db_xref="GOA:Q7VW06" FT /db_xref="InterPro:IPR018323" FT /db_xref="UniProtKB/Swiss-Prot:Q7VW06" FT /protein_id="CAE42744.1" FT /translation="MHMIRRAAGALAVFAVAALAAAPAWAATAQEQLDTFVATVKGATG FT SFKQSTVSPQGATQPAQSGTFAFQRPGKFKWAVQLPYEQLIVSDGKQVFQYDPDLAQVT FT VRQVDQAIGTSPAAILFGAGQLSQAFAVSALPDRDGLQWLRAKPRNADAGFSQVDIGLR FT DNQPARIELVDAFGQTTRVELSNLLPGAVPASEFQFTPPQGVDVVKM" FT misc_feature complement(184274..184339) FT /note="1 probable transmembrane helix predicted for BP2472 FT by TMHMM2.0 at aa 7-29" FT misc_feature complement(184283..184360) FT /note="Signal peptide predicted for BP2472 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.981 between residues 26 and 27" FT CDS complement(184360..186729) FT /transl_table=11 FT /gene="ftsK" FT /locus_tag="BP2473" FT /product="putative cell division protein" FT /note="Similar to many including: Burkholderia solanacearum FT probable cell division transmembrane protein FtsK FT TR:CAD16048 (EMBL:AL646069) (781 aa) fasta scores: E(): FT 1.1e-166, 66.62% id in 785 aa, and to Coxiella burnetii FT cell division protein FtsK SW:FTSK_COXBU (P39920) (778 aa) FT fasta scores: E(): 3.8e-125, 47.78% id in 766 aa. Also FT similar to the C-terminal of Escherichia coli cell division FT protein Ftsk or b0890 SW:FTSK_ECOLI (P46889) (1329 aa) FT fasta scores: E(): 5.4e-111, 60.81% id in 541 aa" FT /db_xref="GOA:Q7VW05" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VW05" FT /protein_id="CAE42745.1" FT /translation="MSRMPRISNATPRASRNTRNGPSPFQARISALLREARWILFAALA FT AWLTLVLATWSPADPGWSHSVSGDAIHNGGGTLGAYLADILLYLFGFSAWWWVVLLLHR FT VRAGYRRLASNLRVTSGKQPDALPRVHWEEGIGFVLLLTGSLGIEALRLYSWGMHLPGG FT TDGESGAGGVIGQMLAGWLSRGVGFTGGTLALLVLLAVGLSLFFSFSWLQIAERVGSWL FT EGLVRRVRDSYAAREDRKVGEVAKAVRTEQVVAKQEKLVHEQPVRIEPAITVVPRSDRA FT EKEKQQSLFAPPAGESDLPAIGLLDPPLQNQETVSAETIEFTSRLIEKKLADFGVSVVV FT VAAQAGPVITRYEIEPATGVKGSQIVNLAKDLARALSLVSIRVVETIPGKNLMGLELPN FT PRRQMVKLSEILGSQTYHASHSVLTMALGKDIAGNPVVADLAKMPHLLVAGTTGSGKSV FT GINAMILSLLYKADASHTRLILIDPKMLEMSVYEGIPHLLAPVVTDMRHAANALNWCVG FT EMEKRYRLMSKMGVRNLAGYNSKIRDAIKREEPIPNPFSLTPDAPEPLQALPHIVVVID FT ELADLMMVVGKKIEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFQV FT SSKIDSRTILDQMGAETLLGQGDMLYMPPGTGLPVRVHGAFVHDDEVHRVVEALKAQGE FT PNYIDGLLEGSEGETGDGLSSVTGMGDAESDPMYDQACEVVLKHRRASISLVQRHLRIG FT YNRAARLLEQMEQAGMVSPMQSNGNREILVPAREEA" FT misc_feature complement(184882..185514) FT /note="HMMPfam hit to PF01580, FtsK/SpoIIIE family" FT misc_feature complement(185359..185382) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(join(186109..186174,186424..186489)) FT /note="2 probable transmembrane helices predicted for FT BP2473 by TMHMM2.0 at aa 30-52 and 135-157" FT CDS 186762..187721 FT /transl_table=11 FT /gene="trxB" FT /locus_tag="BP2474" FT /product="thioredoxin reductase" FT /EC_number="1.6.4.5" FT /note="Similar to Escherichia coli thioredoxin reductase FT TrxB or b0888 or z1232 or Ecs0973 SW:TRXB_ECOLI (P09625) FT (320 aa) fasta scores: E(): 1e-84, 71.65% id in 314 aa, and FT to Vibrio cholerae thioredoxin reductase Vc1182 TR:Q9KSS4 FT (EMBL:AE004198) (318 aa) fasta scores: E(): 1.9e-90, 73.04% FT id in 319 aa" FT /db_xref="GOA:Q7VW04" FT /db_xref="HSSP:1CL0" FT /db_xref="InterPro:IPR013027" FT /db_xref="UniProtKB/TrEMBL:Q7VW04" FT /protein_id="CAE42746.1" FT /translation="MSTPKHAKVLILGSGPAGYTAAVYAARANLSPALITGLAQGGQLM FT TTTEVDNWPADVQGVQGPDLMQRFLQHAERFNTEILFDHIAKVDLSRRPFTLTGDTGNL FT YTCDALIIATGASAKYLGLASEQAFMGRGVSGCATCDGFFYRNKDVVVIGGGNTAVEEA FT LYLSNICRKVTLIHRRDKFRAEPILVDKLMDKVANGNMELKLFHTLDEVLGDDSGVTGV FT RIRSTETDATEDLDVDGCFVAIGHQPNTGIFEGQLEMKDGYIITKSGLSGMATMTSVPG FT VFAAGDVQDHVYRQAITSAGTGCMAALDAQRWLENAGQ" FT misc_feature 186786..187625 FT /note="HMMPfam hit to PF00070, Pyridine FT nucleotide-disulphide oxidoreductase" FT misc_feature 187170..187232 FT /note="ScanRegExp hit to PS00573, Pyridine FT nucleotide-disulphide oxidoreductases class-II active site. FT Confirmed by InterPro eMOTIF pattern match." FT CDS 187708..188394 FT /transl_table=11 FT /locus_tag="BP2475" FT /product="hypothetical protein" FT /note="Similar to several including: Xylella fastidiosa FT hypothetical protein Xf1295 TR:Q9PDT4 (EMBL:AE003963) (180 FT aa) fasta scores: E(): 1.4e-10, 37.85% id in 177 aa and to FT Neisseria meningitidis hypothetical protein Nma1237 FT TR:Q9JUM1 (EMBL:AL162755) (201 aa) fasta scores: E(): FT 5.3e-08, 31.6% id in 212 aa" FT /db_xref="InterPro:IPR002625" FT /db_xref="UniProtKB/TrEMBL:Q7VW03" FT /protein_id="CAE42747.1" FT /translation="MRGNKTGLADLKRLHEQVRETRARAEAAEREAAARASAAAPEADV FT AAFRRAVQAATPLKPSGRLANRRPDATPATAAAVASRRAAALGEAAPRADAGVSDASDI FT GALLTDGGTAYVRAGVAPDTARNLKRGQWRVGAELDLHGLRVEQARHAVLSFLDECLEH FT GIRCVRIVHGKGYGSQGLEPVLKDKARTWLVQKADVLAFSEAPERGGGAGALLVLLRQA FT EAGGRP" FT misc_feature 188122..188364 FT /note="HMMPfam hit to PF01713, Smr domain" FT CDS 188391..188723 FT /transl_table=11 FT /locus_tag="BP2476" FT /product="putative mebrane transport protein" FT /note="Similar to Escherichia coli quaternary ammonium FT compound-resistance protein QacE SW:QACE_ECOLI (Q57225) FT (110 aa) fasta scores: E(): 1.4e-20, 58.18% id in 110 aa FT and to Pseudomonas aeruginosa GacE2 protein TR:Q9ZEH0 FT (EMBL:AJ223604) (110 aa) fasta scores: E(): 3.3e-21, 57.27% FT id in 110 aa" FT /db_xref="GOA:Q7VW02" FT /db_xref="HSSP:1S7B" FT /db_xref="InterPro:IPR000390" FT /db_xref="UniProtKB/TrEMBL:Q7VW02" FT /protein_id="CAE42748.1" FT /translation="MNSWIHLSMAIVAEIIATSALKSSEGFTRLLPSLVTVAGYAIAFY FT FLALTLRVIPVGVAYAIWSGVGIVLISLVGALLFKQHLDLPAIIGIALILAGVVVMNVF FT SKSVGH" FT misc_feature 188394..188672 FT /note="HMMPfam hit to PF00893, Integral membrane protein FT DUF7" FT misc_feature join(188469..188537,188556..188624,188637..188705) FT /note="3 probable transmembrane helices predicted for FT BP2476 by TMHMM2.0 at aa 27-49, 56-78 and 83-105" FT repeat_region 188737..188768 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 188737..189789 FT CDS 188839..189789 FT /transl_table=11 FT /locus_tag="BP2477" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TT94" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TT94" FT /protein_id="CAE42749.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS" FT misc_feature 189097..189162 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 189220..189753 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(189762..189789) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(189786..191852) FT /transl_table=11 FT /locus_tag="BP2478" FT /product="putative membrane transport protein" FT /note="Similar to Aquifex aeolicus Na Ssf or aq_2106 FT TR:O67873 (EMBL:AE000773) (487 aa) fasta scores: E(): FT 2e-25, 38.81% id in 572 aa and to Escherichia coli putative FT symporter YjcG or b4067 SW:YJCG_ECOLI (P32705) (549 aa) FT fasta scores: E(): 1.1e-13, 24.57% id in 639 aa" FT /db_xref="GOA:Q7VW01" FT /db_xref="InterPro:IPR019899" FT /db_xref="UniProtKB/TrEMBL:Q7VW01" FT /protein_id="CAE42750.1" FT /translation="MPFTGNTPQEFEQRLRRIYTLYTLGFILLVLLLALAELMGMARSW FT IGYVFLLVTVSLYACIGIVCRTSDQVEYYVAGRRVPAFYNGMATAADWMSVASFIGVAG FT TLYLTGYGGLAYIMGWTGGYVLVALLLAPYLRKFGQYTIPDYLGARYGGKLPRLAGVFC FT AILCSFTYLVAQIYGVGIITTRLTGISFELGIFVALGGMLVCSFLGGMRAVTWTQVGQY FT IILVIAYLVPVVWLSVKHTGMPVPQLSAGTVLQEITEKEVYLAHDPGERAVRQLWRSRA FT DEMDERLRALPDSLAHEKDRLRGRLAQLNASDAPMVEIRSLERELASYPATVEEARTLW FT SQARAAFEARATPPVPHAEPFPAEDPRERENMRINFLALVLCLMLGTAGMPHILMRSYT FT TPSVGEARRSVCWSLLFILLLYFMAPALALLVKYEVYTQVVGTSFLSLPSWVHAWSAVD FT IHLLDVLDVNRDGIVQLGEISMGADVVVLAMPEIGGLPYVVSGLVAAGGLAAALSTADG FT LLLTLSNSLSHDTWYRVVSPRMSAGRRVMVSKILLLLVAFGAAWVAARKPADILFMVSA FT AFSFAASSFFPALVMGVFWRRANKWGATLGMFAGLAATFAYMAHTHPWLREWVFGVTRA FT EPVDLWWGIQPVAAGVFGAPMAFLTIIVVSLLTPRPDSATEALVDYLREPGGR" FT misc_feature complement(join(189855..189920,189981..190046, FT 190068..190133,190164..190217,190560..190625, FT 190671..190727,191139..191195,191208..191273, FT 191313..191378,191448..191513,191529..191594, FT 191655..191720,191742..191807)) FT /note="13 probable transmembrane helices predicted for FT BP2478 by TMHMM2.0 at aa 15-37, 44-66, 86-108, 113-135, FT 158-180, 193-215, 219-238, 375-394, 409-431, 545-563, FT 573-595, 602-624 and 644-666" FT misc_feature complement(190023..191636) FT /note="HMMPfam hit to PF00474, Sodium:solute symporter FT family" FT misc_feature complement(190419..190457) FT /note="ScanRegExp hit to PS00018, EF-hand calcium-binding FT domain." FT CDS complement(191852..192124) FT /transl_table=11 FT /locus_tag="BP2479" FT /product="putative integral membrane protein" FT /note="no significant database hits" FT /db_xref="InterPro:IPR019886" FT /db_xref="UniProtKB/TrEMBL:Q7VW00" FT /protein_id="CAE42751.1" FT /translation="MPESRVKSEPSPAPYWRRNVRLIVLLLACWAGLTFVPAYFARQLA FT FDFIGWPFSFWMAAYGAPLAYLILIVIYALVMNRFDARSRTRRDD" FT misc_feature complement(join(191894..191959,192005..192061)) FT /note="2 probable transmembrane helices predicted for FT BP2479 by TMHMM2.0 at aa 21-40 and 55-77" FT CDS 192908..194692 FT /transl_table=11 FT /gene="kdpA" FT /locus_tag="BP2480" FT /product="potassium-transporting ATPase A chain" FT /EC_number="3.6.3.12" FT /note="Similar to Escherichia coli potassium-transporting FT ATPase A chain KdpA or b0698 SW:ATKA_ECOLI (P03959) (557 FT aa) fasta scores: E(): 8.4e-80, 55.14% id in 593 aa and to FT Escherichia coli O157:H7 high-affinity FT potassium-transporting ATPase A chain Ecs0726 TR:BAB34149 FT (EMBL:AP002552) (557 aa) fasta scores: E(): 1.1e-80, 55.31% FT id in 593 aa" FT /db_xref="GOA:Q7VVZ9" FT /db_xref="InterPro:IPR004623" FT /db_xref="UniProtKB/Swiss-Prot:Q7VVZ9" FT /protein_id="CAE42752.1" FT /translation="MNADFLGLLLLYLAILLCAAPLLGRHIRQAINGERTWLTAWGQPL FT ERGLYRLAGVDPAAEMDWRRYAVAMLVFNVLGVLAVYALQRLQGWLPLNPAGLPGVAPD FT SALNTAISFVTNTNWQGYAGESTMSYLTQMLALTVQNFVSAATGIAVLIALVRGLARHS FT AATLGNFWADLVRATLYVLLPLSFILALALVSQGVVQNLDPYVEAQTVQAQQYETARLD FT AQGQPMTGPAGQPLTDTVVTRVQTLPMGPVASQEAIKLLGTNGGGFFNANSAHPYENPN FT AWSNLLEMLAILLIPAALCWTFGEMVGSRRQGVAILAAMTVLFAGFAASAAYFEQQPTP FT ALRQAEAALLADGGNLEGKEARFGVAATALFATVTTAASCGAVNGMHDSFSALGGVTPL FT LQMQLGEVIYGGVGSGLYGMLAFAILAVFIAGLMIGRTPEYLGKKIEALDMQMVALVIL FT ATPALVLAGTAVAVLADAGRAGVLNPGAHGFSEILYAMSSAANNNGSAFAGLSANTPFY FT NVLLGLAMWFGRYTIIVAILALAGSLAAKPRLPASVGGMPTTGPLFVALLVGAVLLVGA FT LTYVPALALGPVAEHLQP" FT misc_feature 192908..192964 FT /note="Signal peptide predicted for BP2480 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.796) with cleavage site FT probability 0.525 between residues 19 and 20" FT misc_feature join(192920..192988,193103..193162,193307..193375, FT 193436..193504,193751..193819,193844..193912, FT 194135..194203,194261..194329,194462..194530, FT 194591..194659) FT /note="10 probable transmembrane helices predicted for FT BP2480 by TMHMM2.0 at aa 5-27, 66-85, 134-156, 177-199, FT 282-304, 313-335, 410-432, 452-474, 519-541 and 562-584" FT CDS 194716..196881 FT /transl_table=11 FT /gene="kdpB" FT /locus_tag="BP2481" FT /product="potassium-transporting ATPase B chain" FT /EC_number="3.6.3.12" FT /note="Similar to Escherichia coli potassium-transporting FT ATPase B chain KdpB or b0697 SW:ATKB_ECOLI (P03960) (682 FT aa) fasta scores: E(): 5.4e-136, 66.71% id in 694 aa, and FT to Escherichia coli O157:H7 high-affinity FT potassium-transporting ATPase B chain Ecs0725 TR:BAB34148 FT (EMBL:AP002552) (682 aa) fasta scores: E(): 6.2e-136, FT 66.57% id in 694 aa" FT /db_xref="GOA:Q7VVZ8" FT /db_xref="InterPro:IPR008250" FT /db_xref="UniProtKB/TrEMBL:Q7VVZ8" FT /protein_id="CAE42753.1" FT /translation="MANSPTPLSAQAGLPAASPSLPAATPHRAFGLWSRALAGPALRDT FT LRKLSPAAQLRNPVMFVVYAGSILTTLLWLLALAGLAEAPAGFILAVAAGLWFTVLFAN FT FAEALAEGRGRQQAAALRGLRTTIEARVLTGFRDSDAAAALPPYWRSRATSRPSGALRR FT DDVVLIEAGETVPGDGQVIAGIASVDKSAITGESAPVIRAAGSDFCSVTGGTRVLSDWI FT FVRIAADPGDSFLDRMIAMVESARRQKTPNELALTILLVGLTLVFLLVVASLLPFSMYA FT VSASGAGQAVSITVLVALLVCLIPTTIGGLLSAIGVAGMSRMMRANVIATSGRAIEAAG FT DVSVLLLDKTGTITFGNRQAAAFVPAPGVSPAVLAEAARLASLADETPEGRSIVALAER FT ILDTRSEAPAGARFVPFSAQSRMSGVDLDGRLIRKGAADALARWLGEGQGGLPAAVARD FT VDDVARRGSTPLVVAEGGQALGVIELKDIVKPGIQPRFAALRRMGIKTVMITGDNALTA FT AAIAAEAGVDDFLAEATPQAKLELIRACQADGHLVAMTGDGTNDAPALAQADVAVAMNS FT GTQAAKEAGNMVDLDSNPTKLIEIVEIGKQMLMTRGALTTFSVANDVAKYFAIIPAAFM FT AVYPQLAQLNVMGLATPASAILSAVIFNALIIVALIPLALKGVRYRPLGAAVLLRRNLL FT VYGLGGLLAPFAGIKLIDMALAALGWT" FT misc_feature 194716..194784 FT /note="Signal peptide predicted for BP2481 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.715) with cleavage site FT probability 0.686 between residues 23 and 24" FT misc_feature join(194884..194952,194965..195033,195481..195549, FT 195592..195660,196561..196629,196672..196740, FT 196795..196863) FT /note="7 probable transmembrane helices predicted for FT BP2481 by TMHMM2.0 at aa 57-79, 84-106, 256-278, 293-315, FT 616-638, 653-675 and 694-716" FT misc_feature 194998..195729 FT /note="HMMPfam hit to PF00122, E1-E2 ATPase" FT misc_feature 195739..196449 FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase" FT misc_feature 195757..195777 FT /note="ScanRegExp hit to PS00154, E1-E2 ATPases FT phosphorylation site." FT misc_feature 196486..196524 FT /note="ScanRegExp hit to PS00018, EF-hand calcium-binding FT domain." FT CDS 196892..197491 FT /transl_table=11 FT /gene="kdpC" FT /locus_tag="BP2482" FT /product="potassium-transporting ATPase C chain" FT /EC_number="3.6.3.12" FT /note="Similar to Escherichia coli potassium-transporting FT ATPase C chain KdpC or b0696 SW:ATKC_ECOLI (P03961) (190 FT aa) fasta scores: E(): 2.1e-28, 52.97% id in 185 aa, and to FT Rhizobium loti potassium-transporting ATPase C chain, KdpC FT or Mll3129 TR:Q98GX7 (EMBL:AP003001) (187 aa) fasta scores: FT E(): 2.9e-29, 53.51% id in 185 aa" FT /db_xref="GOA:Q7VVZ7" FT /db_xref="InterPro:IPR003820" FT /db_xref="UniProtKB/TrEMBL:Q7VVZ7" FT /protein_id="CAE42754.1" FT /translation="MTMHPPLPPAGRPLRAALVIFLALSVLVGLLYPLATTGVARLLWP FT FQAGGSLLEQDGRVVGSALIGQSFTDPRYFWGRPSAIAPMPYNAAASGGSNLGPANPAL FT AQAVRARIAALRAADPGNPAPIPVDLATASGSGLDPHISPAAAGYQAARVARARGLPTA FT TVEQLIARHTERPVPDILGEPVVNVLALNLALDRLR" FT misc_feature 196922..197485 FT /note="HMMPfam hit to PF02669, K+-transporting ATPase, c FT chain" FT misc_feature 196928..196996 FT /note="1 probable transmembrane helix predicted for BP2482 FT by TMHMM2.0 at aa 13-35" FT CDS 197557..200271 FT /transl_table=11 FT /gene="kdpD" FT /locus_tag="BP2483" FT /product="Two component sensor protein" FT /note="Similar to Escherichia coli sensor protein KdpD or FT b0695 SW:KDPD_ECOLI (P21865) (894 aa) fasta scores: E(): FT 1.2e-68, 46.35% id in 863 aa and to Burkholderia FT solanacearum probable two-component sensor kinase KdpD FT transcription regulator protein TR:CAD16882 (EMBL:AL646075) FT (937 aa) fasta scores: E(): 1.6e-84, 58.87% id in 885 aa" FT /db_xref="GOA:Q7VVZ6" FT /db_xref="InterPro:IPR016160" FT /db_xref="UniProtKB/TrEMBL:Q7VVZ6" FT /protein_id="CAE42755.1" FT /translation="MADPGNDRLDPDRLLQTLEQAQSDARRGRLRIYFGACAGVGKTYA FT MLAAARAQAAQGVDVVAGLVETHGRADTAALLDTLPALPLQTLDFQGRRLREFDLQATV FT ARRPRLLLLDELAHTNAPGARHAKRWQDVEELLAAGIDVWTTLNVQHLESLNEAVGGIT FT GVRVRETVPDSVFDAADEIILVDLSADELLRRLREGRVYVPEQARHASRHFFRKGNLIA FT LRELALRRTAEHVDDDVRAYRHERAIEPVWRTREAVVACIDADPHAEHVLRSAHRLAQQ FT LDCEWHAITIEAPRVAPLPRAGRARLDQALALAETLGAHVETVAGTDMVDAATRYMRRH FT NITKAVVGRDAWRRRGLSGLLDAALTPGRLLRRRSFADVLASACPEADIVRVGAPSAAT FT AAPRRDPRSWRNASAPAGHAAAGAYLWALAYCAAATLASRLAFPVLHQTNIVMIFLLAV FT VAAALRHGRGPAALASVVSVALFDFFFVQPLASFAVSDVQYLLTFAVLLTVGLLIGQLT FT AGLRQQARAAARREADARGLYEFARELSAALQPEQIAGAASAFLNAAFGARGALYILGL FT DDRLRLAPGAGDAALEPTLAQWAFDHGQACGAGTDTLSNSPVLYLPLRAPMRVRGVLAL FT HHAGPPLYSAAPARRQLDAYATLIAIAIERLHYVEVAQQALLSIESERLRNALLAAVSH FT DLRTPLTSLLGMAETLQRSPAAMTPAALETVAAMQDQARRMHALVVNLLDMARLQSHDA FT PLRRQWQSVEELVGSALAAMNAALQDRPVTVAPLSALPLVKCDGILIERVLCNLLENAA FT KYTPPGSAIHIDALADAHTLQVRVADDGAGVAQADRQRIFEKFARGQRESAPPPAQASG FT WRYAAPSWTPTRAASGSSRPGACAAPASSSRCR" FT misc_feature 197557..198711 FT /note="HMMPfam hit to PF02702, Osmosensitive K+ channel His FT kinase sensor domain" FT misc_feature 197662..197685 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature join(198886..198945,198964..199032,199045..199113) FT /note="3 probable transmembrane helices predicted for FT BP2483 by TMHMM2.0 at aa 460-479, 486-508 and 513-535" FT misc_feature 199351..199386 FT /note="ScanRegExp hit to PS00070, Aldehyde dehydrogenases FT cysteine active site." FT misc_feature 199606..199809 FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain" FT misc_feature 199939..200130 FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, phytochrome-like ATPase" FT CDS 200313..201008 FT /transl_table=11 FT /gene="kdpE" FT /locus_tag="BP2484" FT /product="two component system transcriptional regulatory FT protein" FT /note="Similar to Escherichia coli Kdp operon (involved in FT potassium transport) transcriptional regulatory protein FT KdpE or b0694 SW:KDPE_ECOLI (P21866) (225 aa) fasta scores: FT E(): 2.9e-54, 63.8% id in 221 aa and to Escherichia coli FT O157:H7 EDL933 regulator of Kdp operon KdpE TR:AAG55015 FT (EMBL:AE005247) (225 aa) fasta scores: E(): 4.5e-54, 63.34% FT id in 221 aa" FT /db_xref="GOA:Q7VVZ5" FT /db_xref="HSSP:1B00" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VVZ5" FT /protein_id="CAE42756.1" FT /translation="MPDYRPTVLIVEDDAHIRRFVRSALEAEGCEVHETDTVRRGLIEA FT GTRQPDAVVLDLGLPDEDGMALLRELRGWTELPVLVLSARSSEGDKIAALDAGADDYLT FT KPFGVGELLARLRVLLRRHARGGAGNAAQAGFGDVQIDLARRVVTRAGEHVHLTQIEYR FT LLAALVASRGKVMTHRELLREVWGPSHVESHHYLRIYMGHLRQKLEADPARPRYLLTEI FT GVGYRYAGE" FT misc_feature 200328..200660 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain" FT misc_feature 200769..200987 FT /note="HMMPfam hit to PF00486, Transcriptional regulatory FT protein, C terminal" FT CDS complement(201017..201967) FT /transl_table=11 FT /locus_tag="BP2485" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA1" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA1" FT /protein_id="CAE42757.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWQRPHQGIGRAVPISRLNLDEYNLLTVHT" FT repeat_region 201017..201048 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(201017..202069) FT misc_feature complement(201053..201586) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(201644..201709) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(202038..202069) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(202066..203307) FT /transl_table=11 FT /locus_tag="BP2486" FT /product="putative exported protein" FT /note="weakly similar to Haemophilus influenzae FT hypothetical protein Hi0874 SW:Y874_HAEIN (P44067) (399 aa) FT fasta scores: E(): 1.4e-09, 22.42% id in 223 aa" FT /db_xref="InterPro:IPR018130" FT /db_xref="UniProtKB/TrEMBL:Q7VVZ4" FT /protein_id="CAE42758.1" FT /translation="MPVVQLKIFAVLALLIPALALVSKGGGVAVFYTLAVLTSLAIMVY FT AGRGRAQPSWRDLAWPGAVLAVPLLSMLVTNAYLGIWSGSEFEKLLRFALALPLFWVLL FT CVPRPWLQQIQWSLLFSAYAGAIMLYVIVGWYGGRMQVSFYGAEYNAVAFANLTLFFGF FT ASLLTLGWRLTPWPGLEALLKVGAACAAVYAAHVSETRSSWMLLPVFGLVFLMSRRVWS FT LRRKLAVGLVLVAALAVLAGVMLSSQGNRMHKILTDLQRYTVQNDRNTSVGIRLQLWHA FT SWMIFQEAPVLGVGPRNFRAELAKLRDQGVVTPEVASGYGEPHNDFMAAMAGYGLLGLL FT SILLLYLAPAWVFLRRMASDDRVIRTGAQIGLLFCLGYCAFSLTEMMFRNMRSVPIYSA FT TLVLLLALTAPRAA" FT misc_feature complement(join(202078..202128,202144..202209, FT 202246..202311,202561..202626,202663..202728, FT 202789..202854,202894..202959,202975..203040, FT 203062..203127,203173..203223,203239..203295)) FT /note="11 probable transmembrane helices predicted for FT BP2486 by TMHMM2.0 at aa 4-23, 28-45, 60-82, 89-111, FT 116-138, 151-173, 193-215, 227-249, 332-354, 366-388 and FT 393-410" FT misc_feature complement(203203..203307) FT /note="Signal peptide predicted for BP2486 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.940) with cleavage site FT probability 0.176 between residues 35 and 36" FT CDS complement(203457..204458) FT /transl_table=11 FT /locus_tag="BP2487" FT /product="hypothetical protein" FT /note="Weakly similar to Aquifex aeolicus hypothetical 30.0 FT kDa protein Aq_362 TR:O66687 (EMBL:AE000686) (265 aa) fasta FT scores: E(): 1.1e-05, 29.38% id in 211 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VVZ3" FT /protein_id="CAE42759.1" FT /translation="MARTIENMAKPASDMPPYDKAAALRGLAGARRVALLMAPRLGDTL FT LMMNMARNLAAHGREVSIFGDYIHGLRDWFPGLDIRPSLSEEQAGQVLPGYDCAAQMHV FT GWPYALHAHQPNYFYYDAHVAITGRGFVKLFQIRDFCREQLGLAQAGADNGLRPPPQVQ FT PHRSHPRRVALHPTSTGAQRCWAPRHFKELGLRLLHEGYEPNYIVAPHERAEWSWVLDH FT GLHLPQFPSLSEVAGFIHASGWFIGNESGIGHLASNVGVPTLSLTGRPTRTRAWRPAWS FT TSRIVYPALIPGGRWRDRLWREWLSPRRVMSAFHKLQADDRRQPVGVPWGKI" FT CDS complement(204636..205892) FT /transl_table=11 FT /gene="icd" FT /gene_synonym="icdA" FT /gene_synonym="icdE" FT /locus_tag="BP2488" FT /product="isocitrate dehydrogenase [NADP]" FT /EC_number="1.1.1.42" FT /note="Similar to Escherichia coli isocitrate dehydrogenase FT [NADP] Icd or IcdA or IcdE or b1136 SW:IDH_ECOLI (P08200) FT (416 aa) fasta scores: E(): 4.7e-116, 71.91% id in 413 aa, FT and to Pseudomonas aeruginosa isocitrate dehydrogenase icd FT or pa2623 TR:Q9I0L5 (EMBL:AE004691) (418 aa) fasta scores: FT E(): 5.3e-123, 76.31% id in 418 aa" FT /db_xref="GOA:Q7VVZ2" FT /db_xref="HSSP:1PB3" FT /db_xref="InterPro:IPR019818" FT /db_xref="UniProtKB/TrEMBL:Q7VVZ2" FT /protein_id="CAE42760.1" FT /translation="MSYQHIKVPTGGQKITVNADYSLNVPDQVIIPVIEGDGTGADITP FT VMIKVVDAAVQKAYAGKRKIHWMEVYAGEKATKVYGPDVWLPEETLDAVKDYVVSIKGP FT LTTPVGGGIRSLNVALRQQLDLYVCLRPVRYFKGVPSPVREPEKTDMVIFRENSEDIYA FT GIEYMAESEQAKDLIQYLQTKLGVTKIRFPNTSSIGIKPVSREGTERLVRKALQYAIDN FT DRASVTLVHKGNIMKFTEGGFRDWGYALAQNEFGAQPIDGGPWCKFKNPKTGREIIVKD FT SIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGANLSDSVAMFEAT FT HGTAPKYAGKDYVNPGSEILSAEMMLRHMGWTEAADLIIASMEKSILSKKVTYDFARLL FT EGATQVSCSGFGQVMIDNM" FT misc_feature complement(204651..205805) FT /note="HMMPfam hit to PF00180, Isocitrate/isopropylmalate FT dehydrogenase" FT misc_feature complement(204921..204980) FT /note="ScanRegExp hit to PS00470, Isocitrate and FT isopropylmalate dehydrogenases signature. Confirmed by FT InterPro eMOTIF pattern match." FT CDS 206095..206520 FT /transl_table=11 FT /locus_tag="BP2489" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nma1720 TR:Q9JTL8 (EMBL:AL162756) (156 aa) fasta FT scores: E(): 5.3e-17, 40.58% id in 138 aa" FT /db_xref="InterPro:IPR014993" FT /db_xref="UniProtKB/TrEMBL:Q7VVZ1" FT /protein_id="CAE42761.1" FT /translation="MFNPSRDQVREFFIETWRKHRATEVLTPLESMALDWILEHPEYHG FT DLESPEAMTAEYPVEHGRTNPFLHLSMHLAIAEQLSIDHPRGIRAAYQRLVGRGDAHQA FT AHEIMECLGQVVWEAQRLGTPLDSDAYIELIRQRAER" FT CDS complement(206562..206924) FT /transl_table=11 FT /locus_tag="BP2490" FT /product="putative cytochrome" FT /note="Similar in parts to many cytochromes including: to FT Vibrio cholerae cytochrome C554 Vc2241 TR:Q9KPX1 FT (EMBL:AE004296) (107 aa) fasta scores: E(): 4.7e-06, 41.07% FT id in 112 aa and to Pseudomonas stutzeri cytochrome C4 FT precursor Cc4 SW:CYC4_PSEST (Q52369) (210 aa) fasta scores: FT E(): 2.2e-05, 32.71% id in 107 aa" FT /db_xref="GOA:Q7VVZ0" FT /db_xref="HSSP:1CNO" FT /db_xref="InterPro:IPR009056" FT /db_xref="UniProtKB/TrEMBL:Q7VVZ0" FT /protein_id="CAE42762.1" FT /translation="MKRFTFALAGIVLATAGVSAQAQDVVAGKAVFDKFNCASCHGADA FT KTSVQPEYPVLAGQHADYLAHALKAYKRGAAGSAATANVRKNPIMGAFAAQLSDQDIRN FT VAAWLAAQPSDLGVRQ" FT misc_feature complement(206586..206858) FT /note="HMMPfam hit to PF00034, Cytochrome c" FT misc_feature complement(206799..206816) FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT misc_feature complement(206859..206924) FT /note="Signal peptide predicted for BP2490 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.950 between residues 22 and 23" FT CDS complement(206937..207272) FT /transl_table=11 FT /locus_tag="BP2491" FT /product="putative cytochrome" FT /note="Similar in parts to many cytochromes including: FT Burkholderia solanacearum putative periplasmic cytochrome FT type-C oxidoreductase Srsc0999 TR:CAD14701 (EMBL:AL646062) FT (115 aa) fasta scores: E(): 3.2e-21, 64.7% id in 102 aa and FT to Paracoccus sp cytochrome C-554 SW:C554_PARSP (P00105) FT (83 aa) fasta scores: E(): 3.8e-07, 41.66% id in 84 aa" FT /db_xref="GOA:Q7VVY9" FT /db_xref="HSSP:1M70" FT /db_xref="InterPro:IPR009056" FT /db_xref="UniProtKB/TrEMBL:Q7VVY9" FT /protein_id="CAE42763.1" FT /translation="MTRTVSVLAVLASCAIAGPAAAADAAPVGNAQNARDKVSMCIGCH FT GIPGYKASFPELYHVPMIAGQNAKYIEAALNEYRKGARSHPTMDAVAGSLSDQDIADLA FT AYYSSLK" FT misc_feature complement(206940..207188) FT /note="HMMPfam hit to PF00034, Cytochrome c" FT misc_feature complement(207135..207152) FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT misc_feature complement(207207..207254) FT /note="Signal peptide predicted for BP2491 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.764 between residues 16 and 17" FT repeat_region 207355..207386 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 207355..208407 FT CDS 207457..208407 FT /transl_table=11 FT /locus_tag="BP2492" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q84CT8" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q84CT8" FT /protein_id="CAE42764.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT misc_feature 207715..207780 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 207838..208371 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(208376..208407) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 208500..209387 FT /transl_table=11 FT /locus_tag="BP2493" FT /product="putative ATP-binding protein" FT /note="Similar to many including: Burkholderia solanacearum FT conserved hypothetical protein Rsc0998 TR:CAD14700 FT (EMBL:AL646062) (290 aa) fasta scores: E(): 1.9e-79, 76.4% FT id in 284 aa, and to Pseudomonas aeruginosa hypothetical FT protein Pa2707 TR:Q9I0D5 (EMBL:AE004698) (281 aa) fasta FT scores: E(): 7.7e-74, 71.42% id in 280 aa" FT /db_xref="GOA:Q7VVY8" FT /db_xref="InterPro:IPR011704" FT /db_xref="UniProtKB/TrEMBL:Q7VVY8" FT /protein_id="CAE42765.1" FT /translation="MPTSASSSSAPAQSARFEGTDRYVATDDLKLAVNAALTLQRPLLI FT KGEPGTGKTMLAEEVARALDRPLLQWHIKSTTKAHQGLYEYDAVSRLRDSQLGDEKVRD FT IRNYIVQGTLWQAFEAPEPVVLLIDEIDKADIEFPNDLLRELDRMEFHVYETRQTVQAR FT HRPLVIITSNNEKDLPDAFLRRCFFHYIRFPDRDTMRDIVGVHYPDIRQDVLRAALDTF FT FALREAPGLKKKPSTSELLDWLRLLLAEAIPAAEIDAHAATAVPVLAGALLKNEQDVHL FT LERLGAMARGAQRR" FT misc_feature 208623..209270 FT /note="HMMPfam hit to PF00004, ATPase family associated FT with various cellular activities (AAA)" FT misc_feature 208638..208661 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 209409..210581 FT /transl_table=11 FT /locus_tag="BP2494" FT /product="conserved hypothetical protein" FT /note="highly similar to several including: Rhizobium loti FT Mlr3961 protein TR:Q98F34 (EMBL:AP003003) (396 aa) fasta FT scores: E(): 8.7e-89, 57.97% id in 395 aa and to FT Pseudomonas aeruginosa hypothetical protein Pa2705 FT TR:Q9I0D7 (EMBL:AE004698) (393 aa) fasta scores: E(): FT 2.7e-88, 55.58% id in 394 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VVY7" FT /protein_id="CAE42766.1" FT /translation="MLIDFFYHLRAHKLPVSVQEYLTLLEALRQRLMAPTLDDFYFLAR FT TALVKDESLYDRYDAAFGAYYRGIAAALPADRDIPLDWLIKEFEKTLTPEEKAAIEAHG FT WDKLMELFKQRLEEQQERHAGGSKWIGTGGTSPFGNGGYHPEGIRVGGDSAGNRTAVKV FT WDMRQFRDYDDQLELGTRNFKVALRRLRRFARQGADLELDLDDTIASTARNAGHLDLRL FT VPERRNTVKVLMLLNVGGSMDDHIARVEELFSAARSEFRHLDVYYFHNCPYENLWQNNR FT RRQNERFETWDVLRKYNADWRLIIVGDATMSPYKILQPGGSVEHYNKEAGAVWLRRLLD FT AWPKAAWLNPEPTASWRYRQSIALLRDIMQDRMYPVTVAGLEQAMRQLSK" FT CDS complement(210585..211127) FT /transl_table=11 FT /locus_tag="BP2495" FT /product="conserved hypothetical protein" FT /note="Similar to Staphylococcus aureus (strain N315) FT protein Sa2317 or Sav2529 TR:BAB58691 (EMBL:AP003137) (163 FT aa) fasta scores: E(): 1.3e-29, 47.53% id in 162 aa, FT Escherichia coli O157:H7 putative resistance protein FT Ecs2052 TR:BAB35475 (EMBL:AP002557) (172 aa) fasta scores: FT E(): 3.3e-23, 45.28% id in 159 aa and to Rhizobium meliloti FT putative acetyltransferase Smc01229 TR:CAC46141 FT (EMBL:AL591787) (169 aa) fasta scores: E(): 2.4e-22, 43.13% FT id in 153 aa" FT /db_xref="GOA:Q7VVY6" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:Q7VVY6" FT /protein_id="CAE42767.1" FT /translation="MNATPSPAPLVDCTHDRHAAAILDIFNDAILTSTALYDYQPRALA FT SMEAWFQAKRQGGFPVVGFEDAAGVLMGFASYGTFRAWPAYKYSVEHSVYVDRRYRGRG FT LGEALLRALIERARLQQVHVLVGGIDATNAGSVALHRKLGFVHAGTITQAGFKFGRWLD FT LAFYQLTLDTSLRPVDG" FT misc_feature complement(210690..210941) FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family" FT CDS complement(211165..211539) FT /transl_table=11 FT /locus_tag="BP2496" FT /product="hypothetical protein" FT /note="no significant database hits" FT /db_xref="UniProtKB/TrEMBL:Q7VVY5" FT /protein_id="CAE42768.1" FT /translation="MLTDIVTRALSQLLGNSLSGDVIKGRFRYAYASDDGRFVAILGHD FT LTTYVVDVDAQRYFAECAGVPCGFAGHVLEMEGAQEHGHPWPAVNDLFDLDMDGDEIAW FT RRCPGAVALAATRQAQSRVA" FT CDS 211872..214622 FT /transl_table=11 FT /locus_tag="BP2497" FT /product="putative zinc protease" FT /note="Similar to many proposed proteases including: FT Deinococcus radiodurans protease DR1598 TR:Q9RTZ9 FT (EMBL:AE002003) (951 aa) fasta scores: E(): 4.7e-130, FT 42.77% id in 886 aa and to Rhodothermus sp protease PrT FT TR:Q9ZIG1 (EMBL:AF028721) (300 aa) fasta scores: E(): FT 1.5e-28, 42.24% id in 258 aa" FT /db_xref="GOA:Q7VVY4" FT /db_xref="InterPro:IPR011237" FT /db_xref="UniProtKB/TrEMBL:Q7VVY4" FT /protein_id="CAE42769.1" FT /translation="MRLPLLSRRLNALLVSSFLAFQAGAASLPAGVSEVSSIEGITEYR FT LANGLRVLLAPDASKPTTTVNMTYLVGSRNENYGQTGMAHLLEHMLFKGTPAIRNALGE FT FSRRGLQANGSTSSDRTNYFASFAANPETLKWYLGWQADAMVNSLIAKEDLDSEMTVVR FT NEMESGENNPFRVLMQKMQAAAYQWHNYGKSTIGARSDVENVDIAQLRAFYHEYYQPDN FT AVLIVAGKFDPQTALADIQSSLGKLPKPKRTLPPEYTVEPVQDGERSVTLRRAGGTPLV FT AAMYHLPAAGSPDFVGLDLAATILADTPSSRLYHALVPTKLASGVFGFTMDQLDPGLAM FT FGAQLQPGMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVA FT LSEAIASGDWRLFFLQRDRVREAKLDDVQRAAVAYLVRSNRTEGRYIPTEKPQRAPLAQ FT RADLAAVFKDYKGDPNFKAVEAFDPSPANIDKRTLRRTLDLPNGQVELALLPKATRGDR FT VQAELLIQFGDAEALRGQRVPLAAAAALLDRGTDKLSRQAIQDRLDQLQAEATINGSGT FT NLVVNISTLGKNLPDVMALVLDVVRNASFPQDQVEEYKRQAITMVQDAMTDPTALASRA FT LARHNNPWPADDVRYVPTFDEALEQLRSLSRDDLAAVSGKLYGAGRIKFSAVGEFDPAA FT VEAVLRKGLDGWRSAPAYTRLPDPYRAVPAQQFDIATPDKANAFYISRMPLQLQDTNAD FT YPALYLANFLLGTSETSRLWHRVRETEGLSYNVRSNLSVSSYEPSANWTIYAIYAPQNR FT ARLEKAISEELARALKDGFTDQEVRDGVVALLNYRNLARAQDDVLADTWVNYMQTGRSF FT QWSADMDRKLEALTPDQVNAALRKYLKPEAFSTAVAGDFTKKSTP" FT misc_feature 211872..211946 FT /note="Signal peptide predicted for BP2497 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.964 between residues 25 and 26" FT misc_feature 212019..212468 FT /note="HMMPfam hit to PF00675, Insulinase (Peptidase family FT M16)" FT misc_feature 212085..212156 FT /note="ScanRegExp hit to PS00143, Insulinase family, FT zinc-binding region signature. Confirmed by InterPro eMOTIF FT pattern match." FT CDS complement(214791..215948) FT /transl_table=11 FT /gene="dnaJ" FT /locus_tag="BP2498" FT /product="molecular chaperone" FT /note="Similar to Vibrio harveyi chaperone protein DnaJ FT dnaJ SW:DNAJ_VIBHA (O87385) (385 aa) fasta scores: E(): FT 8.2e-68, 55.49% id in 391 aa, and to Caulobacter crescentus FT chaperone protein DNAJ dnaj or cc0011 SW:DNAJ_CAUCR FT (P22305) (385 aa) fasta scores: E(): 3e-60, 50.64% id in FT 389 aa" FT /db_xref="GOA:Q7VVY3" FT /db_xref="HSSP:1BQZ" FT /db_xref="InterPro:IPR001305" FT /db_xref="UniProtKB/Swiss-Prot:Q7VVY3" FT /protein_id="CAE42770.1" FT /translation="MAKRDYYEVLGVAKNASDEDLKKAYRKLAMKYHPDRNPDSKEAEE FT KFKEAKEAYEVLGDEQKRAAYDRYGHAGVDPNAAGMGGGMGGGMGGGMGGGMGGGFADA FT FGDIFGEIFGAGRRGGGGPQVYRGADLKYALEITLEQAASGFDTEIRVPSWENCDTCHG FT SGAKAGTSPKTCRTCGGSGAVRMQQGFFSVQQTCPTCHGTGKEITDPCPSCDGVGRTRR FT NKTLQVKIPAGIDDGMRIRSSGNGEPGINGGPPGDLYVEIHIKQHKIFQRDGDDLHCEL FT TIPFTTAALGGELQVPTLGGKAEISIPEGTQSGKTFRLRAKGIRGVRGSYPGDLYCHVV FT VETPVRLSDEQKAILRQFEASLNDGGDRHSPQSKSWTDRVKEFFS" FT misc_feature complement(214872..215237) FT /note="HMMPfam hit to PF01556, DnaJ C terminal region" FT misc_feature complement(215274..215516) FT /note="HMMPfam hit to PF00684, DnaJ central domain (4 FT repeats)" FT misc_feature complement(215403..215477) FT /note="ScanRegExp hit to PS00637, CXXCXGXG dnaJ domain FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(215460..215477) FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT misc_feature complement(215739..215936) FT /note="HMMPfam hit to PF00226, DnaJ domain" FT misc_feature complement(215751..215810) FT /note="ScanRegExp hit to PS00636, Nt-dnaJ domain signature. FT Confirmed by InterPro eMOTIF pattern match." FT CDS complement(216049..217974) FT /transl_table=11 FT /gene="dnaK" FT /locus_tag="BP2499" FT /product="molecular chaperone" FT /note="Highly similar to many e.g. Burkholderia FT pseudomallei chaperone protein DnaK SW:DNAK_BURPS (O68191) FT (650 aa) fasta scores: E(): 5e-176, 85.07% id in 650 aa" FT /db_xref="GOA:Q7VVY2" FT /db_xref="InterPro:IPR013126" FT /db_xref="UniProtKB/Swiss-Prot:Q7VVY2" FT /protein_id="CAE42771.1" FT /translation="MSKIIGIDLGTTNSCVAVLDGGQVKIIENAEGARTTPSIVAYMDD FT GETLVGAPAKRQAVANPKNTLYAVKRLIGRKFDEKAVQKDIDLMPYSIVKADNGDAWVE FT VRGKKLAPPQVSAEVLRKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGL FT EVKRIINEPTAAALAFGLDKTEKGDRKIVVYDLGGGTFDVSIIEIADVDGEMQFEVLST FT NGDTFLGGEDFDQRIIDYIISEFKKEQGVDLSKDVLALQRLKEAAEKAKIELSSSQQTE FT INLPYITADASGPKHLNLKITRAKLEALVEELIERTIEPCRVAIKDAGVKVSDIDDVIL FT VGGMTRMPKVQDKVKEFFGREPRKDVNPDEAVAAGAAIQGSVLSGERKDVLLLDVTPLS FT LGIETLGGVMTKMIQKNTTIPTRYSQTFSTADDNQPAVTIKVFQGEREIAAGNKGLGEF FT NLEGIPPAPRGLPQIEVTFDIDANGILHVSAKDKGTGKENKITIKANSGLSEDEIQRMV FT KDAEANAEEDHRLAELAQARNQADALVHATRKSLTEYGEKLEAAEKESIEAAIKDLEDI FT LKTGDKAEIDAKVEALSTASQKLGEKMYADMQAQQQAQQQQAADNAKPVDDNVVDADFK FT EVKRDQ" FT misc_feature complement(216160..217965) FT /note="HMMPfam hit to PF00012, Hsp70 protein" FT misc_feature complement(216919..216963) FT /note="ScanRegExp hit to PS01036, Heat shock hsp70 proteins FT family signature 3. Confirmed by InterPro eMOTIF pattern FT match." FT misc_feature complement(217357..217398) FT /note="ScanRegExp hit to PS00329, Heat shock hsp70 proteins FT family signature 2. Confirmed by InterPro eMOTIF pattern FT match." FT misc_feature complement(217933..217956) FT /note="ScanRegExp hit to PS00297, Heat shock hsp70 proteins FT family signature 1. Confirmed by InterPro eMOTIF pattern FT match." FT CDS complement(218065..218445) FT /transl_table=11 FT /locus_tag="BP2500" FT /product="putative thioredoxin" FT /note="Weakly similar to several thioredoxins including: FT Rhodospirillum rubrum thioredoxin TrxA SW:THIO_RHORU FT (P10473) (104 aa) fasta scores: E(): 0.073, 27.000% id in FT 100 aa" FT /db_xref="InterPro:IPR012335" FT /db_xref="UniProtKB/TrEMBL:Q7VVY1" FT /protein_id="CAE42772.1" FT /translation="MAAAPFDPAEVFQVFGMRRVDSASFDEQVVRAPGDDLRCVFLWGQ FT DCYNCGIFKQTALLQRQALLALELSWFEADVYADEALGRRFSLHGVPTFVLYRSGKRLG FT RVTGWPGLPQFSAAMQRLRDGT" FT CDS complement(218453..219007) FT /transl_table=11 FT /locus_tag="BP2501" FT /product="putative GrpE chaperone" FT /note="Similar to many GrpE, heat shock co-chaperone FT proteins from e.g. Rhizobium loti heat shock protein FT mll3220 TR:Q98GQ5 (EMBL:AP003001) (210 aa) fasta scores: FT E(): 2.3e-14, 38.624% id in 189 aa" FT /db_xref="GOA:Q7VVY0" FT /db_xref="InterPro:IPR009012" FT /db_xref="UniProtKB/Swiss-Prot:Q7VVY0" FT /protein_id="CAE42773.1" FT /translation="MTAPQEPVDSTPESGENAATPGLEDDLSAELAALRAELEAAQATV FT KAQQEQVLRAAAEAENVRRRAQEDVAKARKFGIESFAESLVPVKDSLEAALAQPDQAAQ FT AWREGVEVTLKQLTAAFERNLLKEIAPAQGDKFDPHLHQAISSVPADQPANTVLQLLQK FT GYVIADRTLRPALVVVSAGQG" FT misc_feature complement(218465..218965) FT /note="HMMPfam hit to PF01025, GrpE" FT misc_feature complement(218471..218599) FT /note="ScanRegExp hit to PS01071, grpE protein signature." FT CDS complement(219149..219391) FT /transl_table=11 FT /locus_tag="BP2502" FT /product="hypothetical protein" FT /note="no significant database hits" FT /db_xref="UniProtKB/TrEMBL:Q7VVX9" FT /protein_id="CAE42774.1" FT /translation="MNPPRKPTIGTSGPPGHANLEEDQLERELDEALLETFPASDPIAI FT TSEDERDEPDDKVDEALEDTFPASDPPAPAQPGKK" FT CDS complement(219473..220576) FT /transl_table=11 FT /gene="hemH" FT /locus_tag="BP2503" FT /product="ferrochelatase" FT /EC_number="4.99.1.1" FT /note="Similar to several ferrochelatases including: FT Neisseria meningitidis ferrochelatase HemH SW:HEMZ_NEIMA FT (Q9JVA5) (336 aa) fasta scores: E(): 1.8e-62, 49.419% id in FT 344 aa" FT /db_xref="GOA:Q7VVX8" FT /db_xref="InterPro:IPR019772" FT /db_xref="UniProtKB/Swiss-Prot:Q7VVX8" FT /protein_id="CAE42775.1" FT /translation="MRGVFVFLRLFKYLWPERYLPETPAQDPFDENPPPCGPGRVGVLL FT VNLGTPDEPTRGAIRRYLGEFLSDPRVIEIPRYLWMPILHGLVLTMRPKKLAPRYAGIW FT MEEGSPLLVYSQRQAAGVRQGLAARGVHAEVELAMRYGKPSIPAAITALRERGCDHILA FT VPLYPQYAASTTATVVDAVTRHAGRLRDQPALRFVKRFHNDPAYVEAQAGRIAEFWQAH FT GRPQKLVMSFHGLPRYSIELGDPYYRDCLDTARLLRERLGLREDEVEVTFQSRFGSARW FT LEPYTEPTLAELARQGVTEVDVVCPGFVADCLETLEEISQECRDAFVAAGGRQFRYIPA FT LNDCPPWIEGLTDLVERQLRGWPTGNP" FT misc_feature complement(219500..220459) FT /note="HMMPfam hit to PF00762, Ferrochelatase" FT misc_feature complement(219836..219895) FT /note="ScanRegExp hit to PS00534, Ferrochelatase FT signature." FT CDS complement(220619..221623) FT /transl_table=11 FT /locus_tag="BP2504" FT /product="heat-inducible transcription repressor" FT /note="Similar to many including: Bradyrhizobium japonicum FT heat-inducible transcription repressor HrcA SW:HRCA_BRAJA FT (Q9REF2) (362 aa) fasta scores: E(): 3.9e-41, 38.841% id in FT 345 aa, and to Streptomyces coelicolor heat-inducible FT transcription repressor HrcAC SW:HRCA_STRCO (Q9RDD6) (338 FT aa) fasta scores: E(): 4e-24, 31.195% id in 343 aa" FT /db_xref="GOA:Q7VVX7" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/Swiss-Prot:Q7VVX7" FT /protein_id="CAE42776.1" FT /translation="MDDRARALLKALIERYIADGQPVGSRTLSKVFDLSPATIRNVMAD FT LEELGLIHSPHTSAGRVPTPRGYRMFVDSLLAVRAYQFEPAHIGELLPVSEPSRAVNAA FT AALLSNLTQFAGVVLTPKRTQIFRQIEFIRLSDKRVLLIIVTPEGDVQNRILSAQRDYT FT EAELLEAGNFFNVHFSGKSFDAVRRTLSTELAQLRDDISRLMQAAVEAGAEAADDGEAV FT VISGERKLLDVTDIASDMDRLRKMFSLFEKKTDLLQLLDVSSRAQGVQIYIGGDSQLVP FT MEEVSVITAPYGVDGKVIGTLGVIGPTRMAYERVIPIVDITARLLSNALSHNQ" FT misc_feature complement(220676..221623) FT /note="HMMPfam hit to PF01628, HrcA protein" FT CDS 221738..222637 FT /transl_table=11 FT /gene="ppnK" FT /locus_tag="BP2505" FT /product="probable inorganic polyphosphate/ATP-NAD kinase" FT /EC_number="2.7.1.23" FT /note="Similar to many including: Pyrococcus horikoshii FT inorganic polyphosphate/ATP-NAD kinase PpnK or ph1074 FT SW:PPNK_PYRHO (O58801) (277 aa) fasta scores: E(): 1.8e-18, FT 30.882% id in 272 aa" FT /db_xref="GOA:Q7VVX6" FT /db_xref="InterPro:IPR002504" FT /db_xref="UniProtKB/Swiss-Prot:Q7VVX6" FT /protein_id="CAE42777.1" FT /translation="MYFPIVALIGRYQDTGLDAPLTALAQMLTQAGRRVLVEAETARNA FT GVSGYPVADWDEIGRTATLAVVMGGDGTVLGAARHLAPYGVPLIGINHGRLGFITDIPL FT QDAHDALGRVLEGNYQAEDRMLLQGGVWRGEQQMYSASAVNDVVLNRAGRGGMIEVRVE FT LDGAFMYTQRADGLIIATPTGSTAYSLSANGPILHPGMNAMVLVPVAPQTLSNRPIVIP FT DSGVLNMTLTAMGRVEIGASVHFDMQTWSDLQPGDRITVQRAPHIIRFVHPEGYSFFST FT LRRKLHWNLMPQATDNLE" FT misc_feature 221795..222580 FT /note="HMMPfam hit to PF01513, Domain of unknown function FT DUF15" FT CDS 222653..224314 FT /transl_table=11 FT /locus_tag="BP2506" FT /product="DNA repair protein" FT /note="Similar to Escherichia coli DNA repair protein RecN FT or b2616 SW:RECN_ECOLI (P05824) (553 aa) fasta scores: E(): FT 5.7e-66, 42.754% id in 552 aa" FT /db_xref="GOA:Q7VVX5" FT /db_xref="InterPro:IPR004604" FT /db_xref="UniProtKB/TrEMBL:Q7VVX5" FT /protein_id="CAE42778.1" FT /translation="MLRTLHIRDFVIVEQTELHFGDGFTVFSGETGAGKSILIDALALT FT LGERGDASMLREGAARADITAVFDAPPALRDWLAERELDSGDELALRRVIDSQGRSRAY FT INGMPATIAQLRELGDGLVDIHGQHAHQSLMRPEAQRDLLDAHGGHAELRQTVAQAWKQ FT WRALARQLDTAEQDAEALAAERDRLQWQSDELDRLGLGPDEWDALQTEHTRLSHAQSLL FT DGASRILEALDGEHDSAQHRLNGAAHQLQQMLRHDPALQGIGDELESARIAITEAVSDL FT NNYVSRVELDPQRLADVEARLSAVFETARKFKCEPHDLPALRDSLHGKLAEMQAASDVQ FT ALRAQAEAAQARYEAAAARLSAARRKIAKDLGKQVTQAMQTLSMQGGRFEAALTGGAPS FT AHGSEQVEFLVAGHAGSTPRPLAKVASGGELSRISLALSVIASRAARVPTLIFDEVDSG FT VGGAVAEAVGKLLRELGQRHQVLCVTHLPQVAACAHAQYRVSKVESGGSTRSRIAELDA FT EARVEEVARMLGGIKITATTRDHAREMLGGHTAPAA" FT misc_feature 222737..222760 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(224389..224808) FT /transl_table=11 FT /gene="fur" FT /locus_tag="BP2507" FT /product="ferric ion uptake regulator" FT /note="Previously sequenced Bordetella pertussis ferric ion FT uptake regulator Fur TR:Q9S6N2 (EMBL:AJ238308) (104 aa) FT fasta scores: E(): 2e-38, 100.000% id in 104 aa" FT /db_xref="GOA:P0A3E3" FT /db_xref="InterPro:IPR002481" FT /db_xref="UniProtKB/Swiss-Prot:P0A3E3" FT /protein_id="CAE42779.1" FT /translation="MSDQSELKNMGLKATFPRLKILDIFRKSDLRHLSAEDVYRALIAE FT NVEIGLATVYRVLTQFEQAGILTRSQFDTGKAVFELNDGDHHDHLICTNCGTVFEFSDP FT DIEKRQYKVAKDNGFVLESHAMVLYGICGNCQKGR" FT misc_feature complement(224422..224784) FT /note="HMMPfam hit to PF01475, Ferric uptake regulator FT family" FT CDS 224959..225507 FT /transl_table=11 FT /gene="omlA" FT /locus_tag="BP2508" FT /product="outer membrane lipoprotein" FT /note="Previously sequenced as Bordetella pertussis FT putative outer membrane lipoprotein OmlA TR:Q9X6Z0 FT (EMBL:AJ238308) (182 aa) fasta scores: E(): 1.1e-69, FT 100.000% id in 182 aa. Also similar to Burkholderia FT pseudomallei outer membrane lipoprotein OmlA TR:Q9F9X1 FT (EMBL:AF153356) (133 aa) fasta scores: E(): 5.8e-12, FT 43.860% id in 114 aa" FT /db_xref="GOA:Q9X6Z0" FT /db_xref="InterPro:IPR007450" FT /db_xref="UniProtKB/TrEMBL:Q9X6Z0" FT /protein_id="CAE42780.1" FT /translation="MIARISLRPLKGLAVAVLAASALTACSSGKWGFPYKAGVQQGNWI FT TKEQVALLQQGMSREQVRFALGSPTLTSVLHADRWDYPYYFKPGYGKAQERQFTVWFEN FT DHLVRWSGDEQPDLQPFQIEKVNAKQEEKADAQVDTAEKRQEGIDKAEKVRPHVDVTTP FT DNPTLDYPGEPGQTFEPLK" FT misc_feature 224959..225033 FT /note="Signal peptide predicted for BP2508 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.346 between residues 25 and 26" FT misc_feature 225004..225036 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 225508..226317 FT /transl_table=11 FT /gene="dapB" FT /locus_tag="BP2509" FT /product="dihydrodipicolinate reductase" FT /EC_number="1.3.1.26" FT /note="Previously sequenced Bordetella pertussis FT dihydrodipicolinate reductase DapB SW:DAPB_BORPE (Q9X6Y9) FT (269 aa) fasta scores: E(): 2.6e-103, 100.000% id in 269 FT aa" FT /db_xref="GOA:Q9X6Y9" FT /db_xref="HSSP:1DRW" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/Swiss-Prot:Q9X6Y9" FT /protein_id="CAE42781.1" FT /translation="MTQATPQRIAIAGASGRMGQMLIEAVLDTEGVELAVALDRAGSPS FT IGQDAGAALGRPCGVTITDQLDALAQADCLIDFTRPEGTLQHLQACLRHDVKMVIGTTG FT FDSSGRAEIKVAAQKIAIVFAPNMSVGVNATLKLLDMAARILNSGYDVEIFEAHHRNKV FT DAPSGTALIMGETVASAWDVALPDVATWTRHGDTGVRKPGTIGFSVVRGGDIVGDHTVF FT FCGTGERIEISHRSSSRATYAQGAVRAARFLARQDNGLYDMQAVLGL" FT misc_feature 225526..226092 FT /note="HMMPfam hit to PF01113, Dihydrodipicolinate FT reductase" FT misc_feature 225964..226017 FT /note="ScanRegExp hit to PS01298, Dihydrodipicolinate FT reductase signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS complement(226354..227409) FT /transl_table=11 FT /gene="murB" FT /locus_tag="BP2510" FT /product="UDP-N-acetylenolpyruvoylglucosamine reductase" FT /EC_number="1.1.1.158" FT /note="Previously sequenced Bordetella pertussis FT UDP-N-acetylenolpyruvoylglucosamine reductase MurB FT SW:MURB_BORPE (Q9X6Y8) (351 aa) fasta scores: E(): 1e-140, FT 100.000% id in 351 aa" FT /db_xref="GOA:Q9X6Y8" FT /db_xref="HSSP:2MBR" FT /db_xref="InterPro:IPR006094" FT /db_xref="UniProtKB/Swiss-Prot:Q9X6Y8" FT /protein_id="CAE42782.1" FT /translation="MSTVPARIEPVAPLAPQAQDLRCFNTLGLASHAPAFVALTEPSQL FT PALSALAPRFRQLVVLGGGSNVVLPASIDGLVAQVRLPGVRLVGQCADAWVVEAAAGEN FT WHGFVTACVDNGWDGLENLALIPGTVGAAPVQNIGAYGVELADRFHSLTAWDVKGGRWV FT EMGAAECRFAYRDSFFKHQEPGAWVIGSVRFALPRPWQPVLDYPDLQRHAALDGAAPTA FT RAVYDAVCAIRRAKLPDPAVVGNAGSFFKNPLVDAGTRQALLGRFPGLVSYPQPDGRYK FT LAAGWLIDQCGWKGRQLGAAGVHDRQALVLVNRGGAQARDIMALAAAIQGDVERRYGVR FT LEPEPVVVPAR" FT misc_feature complement(226366..227121) FT /note="HMMPfam hit to PF02215, FT UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding FT domain" FT misc_feature complement(226705..226734) FT /note="ScanRegExp hit to PS00205, Transferrins signature FT 1." FT tRNA 227592..227667 FT /note="tRNA Gly anticodon GCC, Cove score 88.26" FT CDS complement(227728..228519) FT /transl_table=11 FT /locus_tag="BP2511" FT /product="putative hydrolase" FT /note="Similar to several including: Caulobacter crescentus FT hydrolase, alpha/beta hydrolase fold family CC2797 FT TR:Q9A4N3 (EMBL:AE005945) (269 aa) fasta scores: E(): FT 1.9e-15, 28.782% id in 271 aa" FT /db_xref="GOA:Q7VVX4" FT /db_xref="InterPro:IPR000073" FT /db_xref="UniProtKB/TrEMBL:Q7VVX4" FT /protein_id="CAE42783.1" FT /translation="MPHMQLGDVQIHYDVVGDGPPLVMTTGLGTGPQSRQEMIAQLARE FT YSVVTYHQRGTGKSSPGPQGQAIEALADDIVALMDHLKFERVRLIGLSTGTGKVTVVAA FT RHPGRVEKLVLAAPWTHGDDLLDLIQHVRMAAADGMPAELYAQFNAVLLYPPRYRREHA FT SRFAAAAADAAGIKTDAAGLRARLEAILRFDARPLYPLISSSTLVMAARDDLVMPAWFA FT QSAAASISDARLIVLGEGGHMFPETRTEEFLSLVLPFLRRA" FT misc_feature complement(227740..228384) FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold" FT CDS complement(228532..229968) FT /transl_table=11 FT /locus_tag="BP2512" FT /product="conserved hypothetical protein" FT /note="Similar to several e.g. Bacillus subtilis FT hypothetical 47.8 kDa protein YxeQ or lp9I SW:YXEQ_BACSU FT (P54956) (445 aa) fasta scores: E(): 3.8e-31, 30.588% id in FT 425 aa" FT /db_xref="GOA:Q7VVX3" FT /db_xref="InterPro:IPR005656" FT /db_xref="UniProtKB/TrEMBL:Q7VVX3" FT /protein_id="CAE42784.1" FT /translation="MQDTAPGQDLRIGEALADWIARRAHPIGLGTLARARWAVVDLLGC FT AIAGRRDASVTALTRCAKYLGTGDISALGTAYCYPAPVAALIGGTSAHVLDYDDTGATS FT IAHVSAVAVPAILALAEQEHRSLDTVLEAFVVGFEVTTRVGRMLNPEHYAAGWYATATA FT GLLGATAACARLLKLDARQTLAALSIATNLAGGSRRQIGSTMKATQAGIAAKNAVLAVR FT LAQAGIEGSQEPFLGEGGWLSLMAARHGPGAGAAALEGLGSDYALDAPELIQKFFPCCA FT SAHKTLDAIAQLMASGELDARNVDRIDTWLTPVQRRNLRFDQPVGAMQARFSLPYCAAR FT LLHGGSLRLGDFTPQRVADPQLAGIMARVCLHVQDVPQGQAISSGTEMTAALRTRVTLC FT DGTILERVVGAPKGSADNPMTQAERVAKFVDCCGYAGLAVDGGNVLARIDVMFDSNVIA FT PMLLRYLSGLLADAGSSHLD" FT misc_feature complement(229453..229485) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(229984..230970) FT /transl_table=11 FT /locus_tag="BP2513" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta FT scores: E(): 1.2e-42, 38.889% id in 324 aa" FT /db_xref="GOA:Q7VVX2" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VVX2" FT /protein_id="CAE42785.1" FT /translation="MKSKNRKLFLSGAIGLTALLSFGRSQAADDYPTKPIRIVVSYAPG FT GGTDVAARIFATQLSSRIGQSVIVENRPGATGRIGTTSVAQAAPDGYTLLFGTAAELTI FT ASVTAKSLPYRPAEDFVPISLVGWLPNMLVASAKFPPNSVKELIAYAKARPGAVNYGSG FT GNYSQPHLIGLRFNIAAGIDTVHVPYKGSGPMITDLAENQIQYSFSSPQPMVDLIGAGK FT LKALAVLSDKRLDSMPDLPTMSESGLPGFVDSNWLALMAPRGTPPAVVEKLHRASVESL FT QAPALLESWKRLYIVPFGSSPQQLAQFIASETEKYRDLARKINLQPE" FT misc_feature complement(230890..231015) FT /note="Signal peptide predicted for BP2513 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.925 between residues 42 and 43" FT CDS complement(231008..231856) FT /transl_table=11 FT /gene="purU" FT /locus_tag="BP2514" FT /product="putative formyltetrahydrofolate deformylase" FT /EC_number="3.5.1.10" FT /note="Similar to several including Corynebacterium sp FT formyltetrahydrofolate deformylase PurU SW:PURU_CORSP FT (Q46339) (286 aa) fasta scores: E(): 9.7e-50, 46.809% id in FT 282 aa" FT /db_xref="GOA:Q7VVX1" FT /db_xref="InterPro:IPR004810" FT /db_xref="UniProtKB/TrEMBL:Q7VVX1" FT /protein_id="CAE42786.1" FT /translation="MKQYVLLLKCLDRPGIVHEISGGLFQEGCNIEESAQFSESGTAVF FT YMRVRFSAPDRACVQKIATALKRLYNGDEAGLAIHDMDKRSRVLILVSKHGHCLNDLLF FT RQRSGLLNMDVAGVVSNHPDFRELAASYDIPFHHFPVTPQTRAEQEGRILDLVASTQSD FT LVVLARYMQILSDRASNALSGRAINIHHSFLPGFKGARPYYQAYDRGVKLIGATAHYVT FT SELDEGPIIEQDVARVSHSLEPQALTDVGRDVECMTLARAVKWHTEHRIILNGRKTIVF FT A" FT misc_feature complement(231068..231601) FT /note="HMMPfam hit to PF00551, Formyl transferase" FT misc_feature complement(231614..231847) FT /note="HMMPfam hit to PF01842, ACT domain" FT CDS complement(231857..232456) FT /transl_table=11 FT /gene="soxG" FT /locus_tag="BP2515" FT /product="sarcosine oxidase gamma subunit" FT /EC_number="1.5.3.1" FT /note="Weakly similar to Rhizobium loti sarcosine oxidase FT gamma subunit Mlr1276 TR:Q98KX5 (EMBL:AP002997) (195 aa) FT fasta scores: E(): 0.0011, 27.273% id in 187 aa" FT /db_xref="GOA:Q7VVX0" FT /db_xref="InterPro:IPR007375" FT /db_xref="UniProtKB/TrEMBL:Q7VVX0" FT /protein_id="CAE42787.1" FT /translation="MHFGSASAIPQVTSPAAIKLGAQGLVLTEMAVASIQLSGFGSGSA FT LAAWMASALKVAPQPNTFVSVAEGRVDIAAIAPATWLMSGVAADLDSIVASARVELEEV FT AAITELSDGRNVFLQLEGEPAATVLSKYIDIDFEGGALAPGRCASTGIHDTAVLVICRR FT PDLFQIVVHRSLAPSLAETLVDGAAEFGVNVERLGE" FT CDS complement(232464..235403) FT /transl_table=11 FT /gene="soxA" FT /locus_tag="BP2516" FT /product="sarcosine oxidase alpha subunit" FT /EC_number="1.5.3.1" FT /note="Similar to Rhizobium meliloti sarcosine oxidase FT alpha subunit SoxA or r00083 or smc02606 SW:SOXA_RHIME FT (O87386) (987 aa) fasta scores: E(): 5.8e-146, 46.479% id FT in 994 aa" FT /db_xref="GOA:Q7VVW9" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VVW9" FT /protein_id="CAE42788.1" FT /translation="MTQQYRLNHGGLVDRRRPLTFRFDGIQYQGYHGDTLASALLANGV FT HLVGRSFKYHRPRGIYTAGVEEMNALVDVLKEGQADPNTRATVVELEDGIEVSSQNRWP FT SLRFDVRSFHGMISRLIPAGFYYKTFMWPAKFWPKYEHMIRQAAGLGRAPLVRDRDRYE FT KQHAYCDVLVVGAGPAGLAAARSACQAGLRVLLVDEKSRVGGTLPGSNTEIEGVAGAKW FT ATAVERELRESGHASVMLRTTAFGYYDHDTVALAQQCDTPTNPHGATQRLWYVHAKQVV FT LAAGAIERPCVFANNDLPGVMLASAARTYCNEFGVAVGRRVLVLANNDSAYEAALDLKR FT AGIDIVGVVDQREAVSASLSETLASLRIPHHRGSTIKKATGRHRVRCAVIVDQSGLRQT FT VRCDTILVSGGWTPSVHLHSQSGGKVGYDADLSTFVPTSTKQHSLSIGACAGRLQLSEC FT LADGASICAQMDGEAQGRGHPATPPKAEKLVIPPPHLGYRAGKRFIDIQDDVTVEDIEL FT AARENFRSVEHLKRYTTLGMGTDQGKTSNVNGLTIMGALRSESPGAVGTTTFRPPYTPI FT RLGLLSGRHIDKHFSAVRVSPMHEWHVRNGAVMGPANLWLRPKAYLRGNESYAQAWQRE FT CRNVRQDVGIVDVSTLGKIEVQGPDAGVFLDRVYANRISTLKVGKARYGVLLREDGIVF FT DDGTIARWGERLFILSTTTANAAAVMSHFEFLLATAWPTLRVRVTSVTDHYAQIALAGP FT KSREVLERLQISADVTDSALPHMAVCETVWNGLKLLIYRVSFSGERAYELAIAAAYGQR FT LWDQLLAVGAPFSIMPYGTEAMGALRIEKGHPAGPELDGRTTAADLGLGGLVKKEGAFV FT GKALLGREGLQAADRPTLVGLRSKSGAAIQSGSMLVLRAEVGAQELGWVASATYSPTLG FT QHIALGFLVNGANALGRSVLAWSALTSSQVEVEVVNPCFVDIERERLLG" FT misc_feature complement(232488..233471) FT /note="HMMPfam hit to PF01571, Glycine cleavage T-protein FT (aminomethyl transferase)" FT CDS complement(235400..235672) FT /transl_table=11 FT /gene="soxD" FT /locus_tag="BP2517" FT /product="sarcosine oxidase delta subunit" FT /EC_number="1.5.3.1" FT /note="Similar to Rhizobium meliloti sarcosine oxidase FT delta subunit SoxD or r00084 or smc02607 SW:SOXD_RHIME FT (O87387) (92 aa) fasta scores: E(): 4.4e-14, 52.113% id in FT 71 aa" FT /db_xref="GOA:Q7VVW8" FT /db_xref="InterPro:IPR006279" FT /db_xref="UniProtKB/TrEMBL:Q7VVW8" FT /protein_id="CAE42789.1" FT /translation="MLRLDCPFCGVRSHTEFSYLGDATKTRPADDAPIESWLDFVYIRR FT NPKGRHEEYWQHVLGCRAWVRVTRDTLTHAIENVDLTAPIEEPAK" FT CDS complement(235683..236936) FT /transl_table=11 FT /gene="soxB" FT /locus_tag="BP2518" FT /product="sarcosine oxidase beta subunit" FT /EC_number="1.5.3.1" FT /note="Similar to Rhizobium meliloti sarcosine oxidase beta FT subunit SoxB or r00085 or smc02608 SW:SAOX_RHIME (O87388) FT (416 aa) fasta scores: E(): 7.9e-109, 64.269% id in 417 aa" FT /db_xref="GOA:Q7VVW7" FT /db_xref="InterPro:IPR006278" FT /db_xref="UniProtKB/TrEMBL:Q7VVW7" FT /protein_id="CAE42790.1" FT /translation="MRYSFPNLVRNSLSGHRRWPKAWRDPDPKPHYDVIVVGGGGHGLA FT TAYYLAKNHGIRKVAVIEKGWLGGGNTGRNTTLIRSNYLLAGNSRFYEWSMKLWETMSQ FT ELNYNVMFSQRGVLNLAHNDAQRDAFMRRGNAMRLNGIDAQWLTREQIERRVPLLDCGP FT GARYPVEGGLLQPRGGVARHDAVAWGYARAADSLGVDIIQNCECTGIDIRNGKVVGIVT FT SRGRIAADRVGIVVAGHTSQLAQMAGIDLPIESHVLQAFVSEPVKPVLDTVVTYGAGHF FT YVSQSDKGELVMGGDLDFYNSYSQRGNLPILQHAVECAMQMFPFISRLRMMRHWGGVMD FT MTMDGSPIISKTPVDNFYINGGWCYGGFKATPASGWVFAHTMANDTPHELNECFDMRRF FT ESGRLLNEKGAGPRPNLH" FT misc_feature 237143..238237 FT /note="HMMPfam hit to PF01244, Renal dipeptidase" FT CDS 237218..238243 FT /transl_table=11 FT /locus_tag="BP2519" FT /product="putative dipeptidase" FT /note="Similar to many putative and proven dipeptidases FT from Prokaryotes and Eukaryotes e.g Rhizobium meliloti FT putative dipeptidase protein Smc03264 TR:CAC47695 FT (EMBL:AL591792) (336 aa) fasta scores: E(): 7.1e-25, FT 27.976% id in 336 aa and Mus musculus microsomal FT dipeptidase precursor Dpep1 SW:MDP1_MOUSE (P31428) (410 aa) FT fasta scores: E(): 1.5e-15, 30.943% id in 265 aa. Note FT codon 13 offers an alternative translational start site." FT /db_xref="GOA:Q7VVW6" FT /db_xref="InterPro:IPR008257" FT /db_xref="UniProtKB/TrEMBL:Q7VVW6" FT /protein_id="CAE42791.1" FT /translation="MHKKIVVPSATDMATRFTQDSFVFDCLSMYYVIDDPWAENCLAAG FT VNATNVTFGTEQPWDIVLRDFDSGLEKIERSPYLALATNRQEIDAANKQGKLAVIIGTQ FT GSAMVDLEFHRLRTMHRLGMRYFGLAYTGPTMFADGCGESRNAGLSFAGIELIDACNDL FT GLILDLSHVGHRSREEAVARSRFPVYTHSNSYALNPNDRNTTDETARAIRAKGGIMGIC FT GLPKTVHPENATLNELLDHADHWVKTIDAAHVGFGLDFVEAYKSDRSTMPAASRLWRTR FT RPDIFGTVEEFHLQDYPLGIASIKQLPNLTQGLFDRGYAEKEVAGIIGGNWLRHFTEVY FT G" FT CDS 238311..239354 FT /transl_table=11 FT /locus_tag="BP2520" FT /product="putative LysR-family regulatory protein" FT /note="Similar to many members of the LysR-family of FT regulatory proteins including: Mycobacterium marinum FT probable hydrogen peroxide-inducible genes activator OxyR FT SW:OXYR_MYCMR (O87324) (311 aa) fasta scores: E(): 2.3e-13, FT 27.899% id in 276 aa and Acinetobacter lwoffii probable FT cat1 operon transcriptional activator CatR SW:CATR_ACILW FT (O33945) (303 aa) fasta scores: E(): 3.7e-12, 26.101% id in FT 318 aa" FT /db_xref="GOA:Q7VVW5" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VVW5" FT /protein_id="CAE42792.1" FT /translation="MTAPKIIDMQALRIFLAAAKDQNMSIAASKLGLTQSAVSQAIGQL FT EEQFGIKLLDRNRRPLTLTSAGYVLYERGEQLVSAALNLKGAVLEAGHGVRPAIRLGLV FT DSVATTCGTSIIKQLMPRVAQLKLQTGLSFDVGAALIDRRVDLAITSEPMHRENGLVRY FT RVLTEQFVVIFPPGLEVADRENTNLALLSAQLPMIRYRSQSHLGRQAETVLRRADLEIP FT QFLEVDTADTLTSMVAGGLGWALTTPLCLLQAQEHAKRVGIGFLQSSGDSRSIYLLARG FT GEFDSLIKDTFDITVSVLKEECLARLAYIHPSLDRHAMMGEWPGIAGHSKTTGARRQPD FT ISSEGIE" FT misc_feature 238335..238757 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 238374..238439 FT /note="Predicted helix-turn-helix motif with score 1539 FT (+4.43 SD) at aa 22-43, sequence QNMSIAASKLGLTQSAVSQAIG" FT misc_feature 238377..238469 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS 239351..240379 FT /transl_table=11 FT /locus_tag="BP2521" FT /product="putative dehydrogenase" FT /note="Weakly similar to several including: Methanothermus FT fervidus malate dehydrogenase Mdh SW:MDH_METFE (P16142) FT (339 aa) fasta scores: E(): 7e-27, 31.212% id in 330 aa" FT /db_xref="GOA:Q7VVW4" FT /db_xref="InterPro:IPR003767" FT /db_xref="UniProtKB/TrEMBL:Q7VVW4" FT /protein_id="CAE42793.1" FT /translation="MTANPGKDTESRTIAFDDLKMLLASIFEKNGTSATVAHILADTVA FT RADRDGARSHGLFRVPGYVDSLKSGYVDGHAEPVIDAVAGGFLRVDARNGFAQPALAAA FT RALLMERASKNGIALAAIRNSHHFGALWLDVEPFAEAGFIAITTVNAVARMAPFGGNTP FT VYGTNPLAFAAPRKGHSPLVFDLATSAVAFGEIRLAAQHGESLPQGYGLDAQGQPTTSP FT EAIIAGGSLLPFGAHKGSALAMMVELLSAALTDGAFSSEIDQSSHPGAQTSRAGQTVIL FT IDASKSAGGDFSDRTQLLCEMLNAAGQTRLPSDRRYANRAASERDGMHIDEKTYRTLSA FT LM" FT misc_feature 239384..240373 FT /note="HMMPfam hit to PF02615, Malate/L-lactate FT dehydrogenase" FT CDS complement(240385..241260) FT /transl_table=11 FT /gene="folD" FT /locus_tag="BP2522" FT /product="FolD bifunctional protein [includes: FT methylenetetrahydrofolate dehydrogenase and FT methylenetetrahydrofolate cyclohydrolase]" FT /EC_number="1.5.1.5" FT /note="Similar to Bacillus subtilis FolD bifunctional FT protein [includes: methylenetetrahydrofolate dehydrogenase FT and Methenyltetrahydrofolate cyclohydrolase] FolD FT SW:FOLD_BACSU (P54382) (283 aa) fasta scores: E(): 5.5e-51, FT 50.890% id in 281 aa and Haemophilus influenzae FolD FT bifunctional protein [includes: methylenetetrahydrofolate FT dehydrogenase SW:FOLD_HAEIN (P44313) (281 aa) fasta scores: FT E(): 2.6e-50, 53.571% id in 280 aa. Also highly similar to FT BP0990, 76.241% identity in 282 aa overlap." FT /db_xref="GOA:Q7VVW3" FT /db_xref="HSSP:1A4I" FT /db_xref="InterPro:IPR000672" FT /db_xref="UniProtKB/Swiss-Prot:Q7VVW3" FT /protein_id="CAE42794.1" FT /translation="MHGRRFKKMKAKVIDGSRASARIREQLKERVACLRARNIRPGLAV FT LLVGEDPASQVYVRNKVAACEQVGIHSVTERYPSAWTENQLLDRIASLHGDPAINGILV FT QLPLPPHMSAHRVIEAISPLKDVDGFHISNAGLLMTGKPQFQPCTPYGVMKLLESEGVS FT LRGAEAVIVGASNIVGKPMAMLLLAAGATVTICNSKTRDLAGQARRADVLIVAAGRAGI FT VDGSMIKPGAVVIDVGINRSPDGRLCGDVDYGSAAKVAGAITPVPGGVGPMTIAMLLAN FT TVEAAERSAI" FT misc_feature complement(240403..241194) FT /note="HMMPfam hit to PF00763, Tetrahydrofolate FT dehydrogenase/cyclohydrolase, catalytic domain" FT misc_feature complement(240436..240462) FT /note="ScanRegExp hit to PS00767, Tetrahydrofolate FT dehydrogenase/cyclohydrolase signature 2. Confirmed by FT InterPro eMOTIF pattern match." FT CDS complement(241264..242217) FT /transl_table=11 FT /locus_tag="BP2523" FT /product="putative exported protein" FT /note="Similar to several proteins of undefined function FT e.g. Comamonas testosteroni Orf4 protein TR:Q9S155 FT (EMBL:AB024335) (325 aa) fasta scores: E(): 4.5e-28, FT 31.975% id in 319 aa" FT /db_xref="GOA:Q7VVW2" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VVW2" FT /protein_id="CAE42795.1" FT /translation="MKRIFAAVAFMISAFVHAASPYPEKSITIVNPFGAGTASDTVIRA FT LGNRLGSALNVPVVVENRPGANGIVGTLRGVRAPNDGYTIFVTTGTTVSQNSWLFKDIN FT YDPMTDFVGIAVLGGFPLSIVVPPQSPYRDFKELMQAIHTSTQGITYATAYGMQTVCGE FT LLGKAAKGKVLGIPYKSTPPAVLDVTAGRVAFACGETATTLSALQGRTLRALAVINPGG FT SKYIPGVPSVQESLPDFPIMQSWIGLAAPRGIDSKKVELLSREIYKIASDPAFADSLSG FT LGYASTPMDAAATAQFMKSDFSRWRDLIKHVGIQPQ" FT misc_feature complement(242164..242217) FT /note="Signal peptide predicted for BP2523 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 18 and 19" FT CDS complement(242220..243170) FT /transl_table=11 FT /locus_tag="BP2524" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA8" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA8" FT /protein_id="CAE42796.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHR" FT repeat_region 242220..242251 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(242220..243272) FT misc_feature complement(242256..242789) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(242847..242912) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(243241..243272) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(243252..243584) FT /pseudo FT /transl_table=11 FT /locus_tag="BP2524A" FT /product="N-terminal region of a putative membrane protein FT (pseudogene)" FT /note="This CDS is disrupted by the insertion of IS481. The FT C-terminal region of this CDS is BP1081" FT /db_xref="PSEUDO:CAE42797.1" FT CDS complement(243595..244440) FT /transl_table=11 FT /locus_tag="BP2525" FT /product="putative membrane protein" FT /db_xref="InterPro:IPR018076" FT /db_xref="UniProtKB/TrEMBL:Q7VVW1" FT /protein_id="CAE42798.1" FT /translation="MIWLAMGMAMAAAAWLAWRVLAWSGPAARRYRAVYTQQAGAHLSE FT VFLFVDPAQLWAAALAMAAAGGAGAWVFSGSAWLAAVAAVALLRLPHLLLGAARRRRLR FT QLERQLPGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAAL FT ARLARRASFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRM FT QAWIVGALPPVLMGVLGRLQPEAMAALWHTLYGWAALALIVVLEGTGIWLIRRIVAIDV FT " FT misc_feature complement(join(243622..243687,243718..243768, FT 244150..244215,244246..244311,244375..244440)) FT /note="5 probable transmembrane helices predicted for FT BP2525 by TMHMM2.0 at aa 538-560, 581-603, 613-635, 762-779 FT and 789-811" FT CDS complement(join(244437..244490,244492..246054)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP2525A" FT /product="probable secretory protein (pseudogene)" FT /note="Similar to many proteins associated with type II FT secretion systems e.g. Streptomyces coelicolor putative FT secretory protein Sch5.19C TR:Q9X921 (EMBL:AL035636) (523 FT aa) fasta scores: E(): 7.9e-40, 39.220% id in 436 aa." FT /db_xref="PSEUDO:CAE42799.1" FT misc_feature complement(244723..245073) FT /note="HMMPfam hit to PF00437, Bacterial type II secretion FT system protein" FT misc_feature complement(245038..245061) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(245044..245064) FT /note="ScanRegExp hit to PS00227, Tubulin subunits alpha, FT beta, and gamma signature." FT misc_feature complement(245791..245985) FT /note="HMMPfam hit to PF00498, FHA domain" FT CDS complement(246051..247463) FT /transl_table=11 FT /locus_tag="BP2526" FT /product="putative secretory apparatus" FT /note="Similar to many proteins associated with secretion FT and pilus assembly e.g.Pseudomonas aeruginosa fimbrial FT assembly protein PilQ pa5040 SW:PILQ_PSEAE (P34750) (714 FT aa) fasta scores: E(): 2.5e-12, 27.110% id in 391 aa, FT Rhizobium loti probable secretory protein mll0899 TR:Q98LS6 FT (EMBL:AP002996) (461 aa) fasta scores: E(): 1e-21, 27.845% FT id in 413 aa and Rhizobium loti pilus assembly protein FT Mll6479 TR:Q989D0 (EMBL:AP003009) (481 aa) fasta scores: FT E(): 1.1e-16, 27.660% id in 423 aa. Note codon 18 may offer FT an alternative translational start site." FT /db_xref="GOA:Q7VVW0" FT /db_xref="InterPro:IPR001775" FT /db_xref="UniProtKB/TrEMBL:Q7VVW0" FT /protein_id="CAE42800.1" FT /translation="MSMRSRLPLHARGWLPWMAVLLAGGTMLWTPGGRAAPPAQPAVLR FT MEVGETQVLAAAGVTRVAVGNGQVLSATVVDGAEVALFARQPGTSSVHIWSGRGARQAY FT AVEVLPAGRRRLREEVAALLARIPRARSSAVGAHIVIEGSQLSEDDHARIAALAQRYPE FT VLDFTGRVGWDRMVLLDVQVVELPRQSLRELGLRWDEPAVGGVHAGAVWNGSSAALAPP FT PGPLAGAAAVRHAGGLLGVNALLSARLSALAQRGEAVLLAQPQLLARSGATASFQAGGE FT LPYRTTDKEGNGTTLFKPYGVSLQITPRIDADGAVHARIEVEASSVDPTLALAAGPALR FT KRRAVTEFNVHSGQTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETELA FT IFVTPTIVSPSDSFLQRRALLGQMQLDQAFPEAPRLGTGAAADQSADWSRPGGAGSQWR FT RPLWADAQEGAP" FT misc_feature complement(246240..247391) FT /note="HMMPfam hit to PF00263, Bacterial type II and III FT secretion system protein" FT misc_feature complement(246306..246407) FT /note="ScanRegExp hit to PS00875, Bacterial type II FT secretion system protein D signature." FT misc_feature complement(247359..247463) FT /note="Signal peptide predicted for BP2526 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.919) with cleavage site FT probability 0.813 between residues 35 and 36" FT CDS complement(247460..248305) FT /transl_table=11 FT /locus_tag="BP2527" FT /product="putative secretory protein" FT /note="Weakly similar to several e.g. Rhizobium meliloti FT putative pilus assembly signal peptide protein TR:CAC41527 FT (EMBL:AL591782) (269 aa) fasta scores: E(): 0.014, 24.545% FT id in 220 aa" FT /db_xref="InterPro:IPR013974" FT /db_xref="UniProtKB/TrEMBL:Q7VVV9" FT /protein_id="CAE42801.1" FT /translation="MRAARWRQGLRALGGYAFALVAGSLAAWAAREHIQRRVHDIEQQA FT RVPMVASLVAALDLEAGTPLHDELVAVRDMPQAWLPAGALLPDEAARLDGAVLRAPVKA FT GEALQAALLSYPEQTPALTEQLEAGQGAITLPLQELPGLSAAARPGDLVDLYVSFTHRQ FT RQLTMPLLAGSKVLALDPADAQGGASTITLRASAREVARLVAARQEGTLTAVLRRAGAP FT AQGPARAFAAPSAREAGDLPALLGMPRDAAPRAAVPVLYGDRLDAPAGALPGDSEAAMP FT " FT misc_feature complement(248219..248305) FT /note="Signal peptide predicted for BP2527 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.903 between residues 29 and 30" FT CDS complement(248302..248958) FT /transl_table=11 FT /locus_tag="BP2528" FT /product="putative exported protein" FT /note="no significant database hits" FT /db_xref="UniProtKB/TrEMBL:Q7VVV8" FT /protein_id="CAE42802.1" FT /translation="MTPAHLAASASTWLHLPPGVVAAALAGQIQMFGVPAEVRVFHAPQ FT GIDALLAHFATRHAELRDLTVLPGLAVLAGGAGDCTHTISLAPQFGGVEGVAARLCWPR FT GLPSRQPLADVLLPPHARLRLDVATRDGPVSVAQQVWHWRAAGPTVTARWAVRREARLR FT ASGWRLQGAAGPACRCGAPQTWLRAGPQGRERLSLQPALHANGCGMRLLHIGGAP" FT misc_feature 248890..248958 FT /note="Signal peptide predicted for BP2528 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.801) with cleavage site FT probability 0.351 between residues 23 and 24" FT CDS complement(join(248955..249068,249067..249552)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP2528A" FT /product="putative exported protein (pseudogene)" FT /note="no significant database hits" FT /db_xref="PSEUDO:CAE42803.1" FT misc_feature complement(249463..249552) FT /note="Signal peptide predicted for BP2528 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.972) with cleavage site FT probability 0.678 between residues 30 and 31" FT CDS complement(249549..250865) FT /transl_table=11 FT /locus_tag="BP2529" FT /product="putative exported protein" FT /note="no significant database hits" FT /db_xref="UniProtKB/TrEMBL:Q7VVV7" FT /protein_id="CAE42804.1" FT /translation="MRPTRAAVTRQAGQALALGLALMALAGMAWLALYGLGQRAGARAQ FT LLRATDAAAYSGAVVQARALNLLAYIHRAQVGHQVALAHLASLAAWARFAQTQAARRTA FT QNPPVALIGLLFGPRAARGYGAAQDAPAGDLMQAYAAHDELAHRVLQQAADTLARDARA FT TRDATMRAVLRAHYPQGDDGLTLEVLRDDWPGYLRRVTGTGARGLRGWAQRAAGYFDFL FT QPRDFTREGNWIVSPRCPTRRHELRRRGVTWLDRDGRWGASDTLSFHAVRSNRWIGCYF FT REYAMGWGLAADSGATRAGPHVLRAPEDFSQQDFWRWVHRHTSWNLLGGRHNPLALSYA FT ASRRLSPGGRGLPAVYEPASSSEAAVGFEIRTQRREEGIVLSARAAGQSHFSLPPGTSV FT ARGRPDVLFLPYWQARRAAADAALPMGVRRTVRGPESRP" FT misc_feature complement(250773..250865) FT /note="Signal peptide predicted for BP2529 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.992) with cleavage site FT probability 0.323 between residues 31 and 32" FT CDS complement(250862..251125) FT /transl_table=11 FT /locus_tag="BP2530" FT /product="integral membrane protein" FT /note="Similar to the N-terminus of Xylella fastidiosa FT fimbrial protein xf2542 TR:Q9PAH6 (EMBL:AE004061) (148 aa) FT fasta scores: E(): 0.68, 36.364% id in 77 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VVV6" FT /protein_id="CAE42805.1" FT /translation="MSVKQRQLGQGMTEYIIVVALVAVAAIAVYQLFGQVVRSQTAAMA FT RELAGEDGSAQARAAQSAAGRAASQTRARSLKSFTGNAQGAK" FT misc_feature complement(251015..251080) FT /note="1 probable transmembrane helix predicted for BP2530 FT by TMHMM2.0 at aa 15-37" FT CDS complement(251319..251450) FT /transl_table=11 FT /gene="ecnB" FT /locus_tag="BP2531" FT /product="entericidin B-like bacteriolytic toxin" FT /note="Similar to Escherichia coli bacteriolytic toxin FT entericidin B precursor EcnB or B4147.2 SW:ECNB_ECOLI FT (P56549) (48 aa) fasta scores: E(): 0.0016, 44.444% id in FT 45 aa and Citrobacter freundii entericidin B precursor EcnB FT SW:ECNB_CITFR (P56550) (48 aa) fasta scores: E(): 0.0064, FT 42.222% id in 45 aa. Note in E. coli ecnB is located next FT to the anti-toxin ecnA. This is not the situation in B. FT pertusis. However, B. pertusis possess two possible ecnA FT paralogues BP0527 and BP2565." FT /db_xref="GOA:Q7VVV5" FT /db_xref="InterPro:IPR012556" FT /db_xref="UniProtKB/TrEMBL:Q7VVV5" FT /protein_id="CAE42806.1" FT /translation="MRSKIVLTAFVVFGFVLQGCNTVAGMGKDMSDAGSAITHAAEK" FT misc_feature complement(251391..251423) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature complement(251394..251450) FT /note="Signal peptide predicted for BP2531 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.973) with cleavage site FT probability 0.523 between residues 19 and 20" FT CDS complement(251477..252172) FT /transl_table=11 FT /locus_tag="BP2532" FT /product="conserved hypothetical protein" FT /note="Similar to many proteins of unproven function FT including: Escherichia coli O157:H7 putative isomerase FT Ecs3029 TR:BAB36452 (EMBL:AP002560) (233 aa) fasta scores: FT E(): 1.5e-60, 63.755% id in 229 aa and Caulobacter FT crescentus fumarylacetoacetate hydrolase family protein FT cc3567 TR:Q9A2J4 (EMBL:AE006015) (226 aa) fasta scores: FT E(): 9.1e-47, 54.911% id in 224 aa" FT /db_xref="GOA:Q7VVV4" FT /db_xref="HSSP:1GTT" FT /db_xref="InterPro:IPR002529" FT /db_xref="UniProtKB/TrEMBL:Q7VVV4" FT /protein_id="CAE42807.1" FT /translation="MDYVFPPSPPAAVPVAGGNARFPVRRVYCVGRNYAEHAKEMGFTG FT REDPFFFCKPADAILSVGDGATGEMPYPPKTANLHYEMELVVVLGKGGRDLTVEQADEC FT VWGYALGLDMTRRDLQGEAKKQGRPWEVGKAFDLSAPLGPIHPRSAVGTLDKGAIWLDV FT NGERKQSSDISQMIWNIPESIAYLSGLFELQPGDIIFTGTPEGVGAVVKGDVIVGGVEG FT LGELRVRIA" FT misc_feature complement(251537..252052) FT /note="HMMPfam hit to PF01557, Fumarylacetoacetate (FAA) FT hydrolase family" FT CDS complement(252367..252903) FT /transl_table=11 FT /gene="ppa" FT /locus_tag="BP2533" FT /product="inorganic pyrophosphatase" FT /EC_number="3.6.1.1" FT /note="Highly similar to Escherichia coli inorganic FT pyrophosphatase Ppa or B4226 SW:IPYR_ECOLI (P17288) (175 FT aa) fasta scores: E(): 1.1e-42, 65.341% id in 176 aa" FT /db_xref="GOA:Q7VVV3" FT /db_xref="HSSP:1FAJ" FT /db_xref="InterPro:IPR008162" FT /db_xref="UniProtKB/TrEMBL:Q7VVV3" FT /protein_id="CAE42808.1" FT /translation="MSLDRVAPGKKLPDDFNVIIEIPMNADPVKYEVDKESGAIFVDRF FT MLTAMHYPCNYGYIPQTLSKDGDPADVLVLTPFPIQIGAVVRCRAIGVLEMDDESGGDA FT KLLAVPIEKLYPPYRNIKSYEDLPAEDVSRIQHFFEHYKDLEKGKWVKVKGWKGVDAAH FT EEIVRSAERYAKGQA" FT misc_feature complement(252379..252855) FT /note="HMMPfam hit to PF00719, Inorganic pyrophosphatase" FT CDS complement(252932..254527) FT /transl_table=11 FT /locus_tag="BP2534" FT /product="putative exported protein" FT /note="Weakly similar to several including: Escherichia FT coli HemY protein involved in porphyrin biosynthesis FT SW:HEMY_ECOLI (P09128) (398 aa) fasta scores: E(): 2.6e-09, FT 24.165% id in 389 aa and Pseudomonas aeruginosa FT hypothetical protein Pa5257 TR:Q9HTT8 (EMBL:AE004938) (412 FT aa) fasta scores: E(): 6.1e-14, 29.882% id in 425 aa" FT /db_xref="InterPro:IPR010817" FT /db_xref="UniProtKB/TrEMBL:Q7VVV2" FT /protein_id="CAE42809.1" FT /translation="MRTWFWTLLLAVVAVALAVVLRAHAGNVLLLVWPWRIELSLTLTV FT LLLVAAFVTLYVGLRLLAWLVAIPDRLRAWRGRRAQERDHELLERGWIGLLEGRFAQAE FT KDLSKLFDQTKVRSSRVLAALSGARAAHNLGEYERRDRMLESAREQAGEDAGLQEATAT FT VSADMLLDQGRAQQALDLLEPLQDGGARHLHTMRLLLRAETALQHHERVFMLARGLLRR FT NAIGKAEAEQLIDSAGAARLRAGMAVDQWRPIWKDLKSDERLLPNIALAGAAAFEDAGE FT ANEAARILEAAVAVKFNPALVAAYARCDAAQVPHRLAKAETWLQQRPADTDLLTALGLL FT CLNGQLWRQAERYLQRSVSRRNDPQAHALLGSLYDRLDRPADAARHWRQATAARVALPV FT LVADIALPAADTKADPAWLDAEREYVPNMSEYTAPVIAEAPPEAEPGAVDYVLDPDARA FT AGEHEPASAVAPEPVSVPPRTAIDIEDYFDSAPIPAAAIEAPVSSYRAGADDEQPAKPG FT GAGSSAGPASGDKA" FT misc_feature complement(254324..254389) FT /note="probable transmembrane helices predicted for BP2534 FT by TMHMM2.0 at aa 46-68" FT misc_feature complement(254453..254527) FT /note="Signal peptide predicted for BP2534 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.991 between residues 25 and 26" FT CDS complement(254531..255715) FT /transl_table=11 FT /locus_tag="BP2535" FT /product="putative exported protein" FT /note="no significant database hits" FT /db_xref="InterPro:IPR007470" FT /db_xref="UniProtKB/TrEMBL:Q7VVV1" FT /protein_id="CAE42810.1" FT /translation="MTDNTSATPPGTVPGTPGTAAADEAVASQSCKGKGVNSTLVTALI FT IVILLAVGLGWAAWLQRKQFVSAGQEVAARLNTLGAELTQSRNDMREALALAQAQSGKV FT AELEGKVREAQSQYSALQQALQNLNDGASDEMLANDIERLITIASQQLRLAGNVSNAIV FT ALETAQARLARADRPRFASLQQSINGDLDRLRAVGVVDIAAQSARIDRLVALVGRAPLL FT VPDAAAPGVTAVPQANEAVSASVDPGADLPADAAWWQRWQAEIASWPGRAGSALAHELG FT DLIRVQRVDQPTALLLSPEQAGQLRSTLRQRLLTAQLSMLMRQPAVWNSELDAVAATLA FT QYFDGKAPDTVAALALARELGQVEIAVRVPDVADSLNGIAALRAAGFNADGQQD" FT misc_feature complement(255536..255601) FT /note="1 probable transmembrane helix predicted for BP2535 FT by TMHMM2.0 at aa 38-60" FT misc_feature complement(255650..255715) FT /note="Signal peptide predicted for BP2535 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.680) with cleavage site FT probability 0.620 between residues 22 and 23" FT CDS complement(255753..256541) FT /transl_table=11 FT /locus_tag="BP2536" FT /product="putative uroporphyrinogen-III synthase" FT /note="Similar to several invloved in porphyrin FT biosynthesis including: Salmonella typhimurium FT uroporphyrinogen-III synthase HemD or Stmd1.54 FT SW:HEM4_SALTY (Q9L6Q3) (246 aa) fasta scores: E(): 2.2e-06, FT 27.755% id in 245 aa and Escherichia coli FT uroporphyrinogen-III synthase HemD or b3804 SW:HEM4_ECOLI FT (P09126) (246 aa) fasta scores: E(): 5.9e-06, 27.236% id in FT 246 aa" FT /db_xref="GOA:Q7VVV0" FT /db_xref="InterPro:IPR003754" FT /db_xref="UniProtKB/TrEMBL:Q7VVV0" FT /protein_id="CAE42811.1" FT /translation="MSQIAILTRPQGRNGALAQRLHDAGWQTLCLPALRIEPLPPENGV FT VPLPRDYDLVVFVSGNAARLYLEQLRERGELPWPAGAVAATVGPASARALLDSGQFGAD FT TTVLHPAETAPTHDSEALWALLRARPALPRRALLVRGTQGRDWLADRLVAAGVEVSRHA FT VYRRRPAPWAQEGRQRLRDWALAGERPTWLLTSGEGIDALVQGLREEQLLDWWLQGRFV FT VTHPVLAERLRALAGGGADAPMVKNCMPADEAIFATFVAA" FT misc_feature complement(255816..256508) FT /note="HMMPfam hit to PF02602, Uroporphyrinogen-III FT synthase HemD" FT CDS complement(256574..257518) FT /transl_table=11 FT /gene="HemC" FT /locus_tag="BP2537" FT /product="porphobilinogen deaminase" FT /EC_number="4.3.1.8" FT /note="Similar to many porphobilinogen deaminases FT including: Neisseria meningitidis HemC or Nma0718 FT SW:HEM3_NEIMA (Q9JVS4) (311 aa) fasta scores: E(): 1.2e-67, FT 61.765% id in 306 aa and Escherichia coli HemC or pope or FT b3805 SW:HEM3_ECOLI (P06983) (313 aa) fasta scores: E(): FT 3.7e-58, 57.929% id in 309 aa" FT /db_xref="GOA:Q7VVU9" FT /db_xref="InterPro:IPR000860" FT /db_xref="UniProtKB/Swiss-Prot:Q7VVU9" FT /protein_id="CAE42812.1" FT /translation="MAAVERLTIATRASRLALWQAEHVRDLLRARYPACSVELLTLTTR FT GDQILDRTLSKVGGKGLFVKELETALLDGRADLAVHSLKDVPVDLHAPFELSCVLERAD FT PRDAFVSNDYGSLADLPPGAAVGTSSLRRESQIRARYPHLVVKPLRGNLDTRLGKLDNG FT DYAAIVLAAAGLERLGLAARIRALLEPDDSLPAAGQGALGIEILQGRADVRAMLAPLGD FT AATLACVTAERAVSRMLGGSCQVPLAAYARIDGDELALRALVAAPDGRRIVRAERRGPR FT DQAQAIGESAARDLLADGADAILAELLPTSPAP" FT misc_feature complement(256628..257500) FT /note="HMMPfam hit to PF01379, Porphobilinogen deaminase" FT misc_feature complement(256775..256825) FT /note="ScanRegExp hit to PS00533, Porphobilinogen deaminase FT cofactor-binding site." FT CDS complement(257637..258356) FT /transl_table=11 FT /locus_tag="BP2538" FT /product="integral membrane protein" FT /note="Similar to several e.g. Pseudomonas aeruginosa FT hypothetical protein Pa1170 TR:Q9I4G7 (EMBL:AE004547) (244 FT aa) fasta scores: E(): 6.1e-43, 52.790% id in 233 aa. Also FT similar to BP1646 (69.456% identity in 239 aa), and to FT BP2539 (46.222% identity in 225 aa)" FT /db_xref="GOA:Q7VVU8" FT /db_xref="InterPro:IPR005496" FT /db_xref="UniProtKB/TrEMBL:Q7VVU8" FT /protein_id="CAE42813.1" FT /translation="MLEFFQTLSWAAVFQIILIDILLGGDNAVVIALACRNLAPKQRMQ FT GILWGTAGAIILRVVLIAFALTLLNIPFLKVVGGLLLVWIGVKLLVPEDEGHDSIKGGT FT SIVAAVKTIIIADFVMSLDNVIAIAGAAQNAHADHQIGLVVFGLVVSVPIIIWGSTLVL FT KLIDRFPMVVTFGAALLGWIAGGMLITDVFVVRQFGEQPSAVKIGVEIAGALLVVLLGR FT WLASRKTASKESVNESA" FT misc_feature complement(join(257679..257735,257772..257837, FT 257868..257933,257973..258038,258153..258218, FT 258258..258323)) FT /note="6 probable transmembrane helices predicted for FT BP2538 by TMHMM2.0 at aa 40-62, 75-97, 135-157, 170-192, FT 202-224 and 236-255" FT CDS complement(258515..259210) FT /transl_table=11 FT /locus_tag="BP2539" FT /product="integral membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1170 pa1170 TR:Q9I4G7 (EMBL:AE004547) (244 aa) FT fasta scores: E(): 1.1e-34, 51.092% id in 229 aa. Also FT similar to BP2538 (46.222% identity in 225 aa), and to FT BP1646 45.982% identity in 239 aa." FT /db_xref="GOA:Q7VVU7" FT /db_xref="InterPro:IPR005496" FT /db_xref="UniProtKB/TrEMBL:Q7VVU7" FT /protein |