EBI Dbfetch

ID   BX640417; SV 1; linear; genomic DNA; STD; PRO; 348934 BP.
XX
AC   BX640417;
XX
DT   09-AUG-2003 (Rel. 76, Created)
DT   23-OCT-2008 (Rel. 97, Last updated, Version 7)
XX
DE   Bordetella pertussis strain Tohama I, complete genome; segment 7/12
XX
KW   complete genome.
XX
OS   Bordetella pertussis
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Alcaligenaceae; Bordetella.
XX
RN   [2]
RP   1-348934
RA   Sebaihia M.;
RT   ;
RL   Submitted (06-AUG-2003) to the EMBL/GenBank/DDBJ databases.
RL   Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute,
RL   Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail:
RL   ms5@sanger.ac.uk
XX
RN   [3]
RA   Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E.,
RA   Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L.,
RA   Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A.,
RA   Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I.,
RA   Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T.,
RA   Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S.,
RA   Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E.,
RA   Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M.,
RA   Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S.,
RA   Barrell B.G., Maskell D.J.;
RT   "Comparative analysis of the genome sequences of Bordetella pertussis,
RT   Bordetella parapertussis and Bordetella bronchiseptica";
RL   Nat. Genet. 35(1):0-0(2003).
XX
DR   EMBL-CON; BX470248.
DR   RFAM; RF01118; PK-G12rRNA.
DR   SILVA-LSU; BX640417.
DR   SILVA-SSU; BX640417.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..348934
FT                   /organism="Bordetella pertussis"
FT                   /strain="Tohama I"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:520"
FT   CDS             complement(177..1646)
FT                   /transl_table=11
FT                   /gene="gabD"
FT                   /locus_tag="BP1976"
FT                   /product="succinate-semialdehyde dehydrogenase [NADP+]"
FT                   /EC_number="1.2.1.16"
FT                   /note="Similar to Escherichia coli succinate-semialdehyde
FT                   dehydrogenase [NADP+] GabD or B2661 SW:GABD_ECOLI (P25526)
FT                   (482 aa) fasta scores: E(): 7e-125, 66.66% id in 480 aa,
FT                   and to Alcaligenes eutrophus succinate semialdehyde
FT                   dehydrogenase GabD TR:Q9RBF6 (EMBL:AF175740) (483 aa) fasta
FT                   scores: E(): 2.8e-127, 66.87% id in 480 aa"
FT                   /db_xref="GOA:Q7VX44"
FT                   /db_xref="HSSP:1BXS"
FT                   /db_xref="InterPro:IPR016162"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX44"
FT                   /protein_id="CAE42256.1"
FT                   /translation="MTQLTQPLSRAELLRDACYIDGKWVGAGNGPSIPVDNPSTGKTII
FT                   SVPKLGRKEAEQAIDAAEAALPAWSARTGKERAAILLKWAQLMMENQQDLAVIMTSEQG
FT                   KPVPEAAGEIAYAASFLEWFAEEAKRIDGDILQSPKGGQRLMVLKQPIGVTAAITPWNF
FT                   PAAMITRKVGPALAAGCTMVVKPAQQTPLTALALAVLAVLAGVPAGVFQVVTGSSREIG
FT                   AALCESEVVRKLSFTGSTEVGRTLMEQCAPTIKKLSLELGGNAPFIVFDDADLDRAIDG
FT                   ILASKYRNAGQTCVCANRIYVQAGVYEEVAKRLVEKVNAMKVGDGFEQGVTQGPLIDTA
FT                   AVAKVQEHIADATAHGAKVIAGGEPHALGGSFFQPTVVRDVTQSMRFAVEETFGPVAPL
FT                   FKFDSEDEVIGMANNTIFGLAAYFYTRDYARIWRVSEALEYGIVGINTGIISNEVGPFG
FT                   GVKQSGLGREGSKYGIEDYLELKYLCVDLGA"
FT   misc_feature    complement(186..1580)
FT                   /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase
FT                   family"
FT   misc_feature    complement(753..788)
FT                   /note="ScanRegExp hit to PS00070, Aldehyde dehydrogenases
FT                   cysteine active site."
FT   misc_feature    complement(849..872)
FT                   /note="ScanRegExp hit to PS00687, Aldehyde dehydrogenases
FT                   glutamic acid active site."
FT   CDS             complement(1726..2991)
FT                   /transl_table=11
FT                   /gene="goaG"
FT                   /locus_tag="BP1977"
FT                   /product="4-aminobutyrate aminotransferase"
FT                   /EC_number="2.6.1.19"
FT                   /note="Similar to Escherichia coli 4-aminobutyrate
FT                   aminotransferase GoaG or B1302 SW:GOAG_ECOLI (P50457) (421
FT                   aa) fasta scores: E(): 2.8e-108, 68.09% id in 420 aa, and
FT                   to Yersinia pestis putative aminobutyrate aminotransferase
FT                   GoaG TR:CAC92096 (EMBL:AJ414154) (429 aa) fasta scores:
FT                   E(): 4.7e-105, 64.33% id in 429 aa"
FT                   /db_xref="GOA:Q7VX43"
FT                   /db_xref="HSSP:1GBN"
FT                   /db_xref="InterPro:IPR018253"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX43"
FT                   /protein_id="CAE42257.1"
FT                   /translation="MKNRDLNTRRTLATPRGVGVMCDFYAVRAENSTLWDAEGKEYIDF
FT                   AGGIAVLNTGHRHPKVKAAIAAQLDNFTHTAYQIVPYEGYVSLAERINAVAPIEGLKKT
FT                   AFFTTGVEAVENAVKIARAYTGRSGVVAFSGAFHGRTMMGMALTGKVAPYKLAFGPMPG
FT                   DVFHVPFPNATQAISVADSLKALDLLFKVDIDPKRVAAIIIEPVQGEGGFNVTPPELMQ
FT                   ALRKVCDEHGILLIADEVQTGFARTGKLFAMQHHSVQADLITMAKSLGGGMPISGVVGR
FT                   AEVMDGPAAGGLGGTYAGNPLAVAAAHAVLDVIAEEKLCERAVELGKRLMDRLEGLRAK
FT                   CPAIADVRGLGSMVALELNDPATGKPDAEAVKRIQQQAIERGLILLSCGVYGNVLRFLY
FT                   PLTIPDDQFARALDILAEIIAA"
FT   misc_feature    complement(1789..2901)
FT                   /note="HMMPfam hit to PF00202, Aminotransferase class-III"
FT   misc_feature    complement(2176..2289)
FT                   /note="ScanRegExp hit to PS00600, Aminotransferases
FT                   class-III pyridoxal-phosphate attachment site."
FT   misc_feature    complement(2863..2922)
FT                   /note="ScanRegExp hit to PS00636, Nt-dnaJ domain
FT                   signature."
FT   CDS             join(3128..4483,4482..4625)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP1978"
FT                   /product="probable GntR-family transcriptional regulator
FT                   (Pseudogene)"
FT                   /note="Pseudogene. This CDS appears to have a frameshift
FT                   mutation following codon 452. The frameshift occurs within
FT                   a polymeric tract of (CG)3. The sequence has been checked
FT                   and believed to be correct. Similar to Rhizobium meliloti
FT                   probable rhizopine catabolism regulatory protein MocR
FT                   SW:MOCR_RHIME (P49309) (493 aa) fasta scores: E(): 7.5e-69,
FT                   42.34% id in 470 aa, and to Yersinia pestis putative
FT                   GntR-family regulatory protein Ypo2845 TR:CAC92097
FT                   (EMBL:AJ414154) (501 aa) fasta scores: E(): 6.3e-98, 52.9%
FT                   id in 499 aa"
FT                   /db_xref="PSEUDO:CAE42258.1"
FT   misc_feature    3200..3379
FT                   /note="HMMPfam hit to PF00392, Bacterial regulatory
FT                   proteins, gntR family"
FT   variation       4476..4481
FT                   /note="(CG)3 in pertussis; (CG)4 in parapertussis and
FT                   bronchiseptica"
FT   CDS             complement(4626..5525)
FT                   /transl_table=11
FT                   /locus_tag="BP1979"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Streptomyces coelicolor hypothetical 32.4
FT                   kDa protein Sc9b5.25 TR:Q9ZBF5 (EMBL:AL035206) (292 aa)
FT                   fasta scores: E(): 6.1e-30, 39.04% id in 292 aa, and to
FT                   Bacillus halodurans Bh3455 protein Bh3455 TR:Q9K7B1
FT                   (EMBL:AP001518) (282 aa) fasta scores: E(): 1.3e-15, 32.41%
FT                   id in 290 aa"
FT                   /db_xref="InterPro:IPR002763"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX42"
FT                   /protein_id="CAE42259.1"
FT                   /translation="MNILIGTASWTDPTLLACGRFYPAAARTPQARLQYYATRFGMAEI
FT                   DASFYALPDPHTAYLWAQRTPPGFVFNIKAFRLFTGHQTPRAALPADLRREVPGEGDAV
FT                   FDDQVPGAVRDELWRRYVQALEPLRQAGKLGAVHCQFAPWVRREARGVARVRDCAARLR
FT                   DAGGLVMAAEMRHASWFDSAAASNWTLALERELELVHTVVDSPQGFANSVPPVWARTHP
FT                   ELALVRLHGRNAGAWNNRAAASSSRFQYEYSPQELAELAERVRRLAERARQTHAVFNTN
FT                   YEDQGMRNAAGLAAALAP"
FT   misc_feature    complement(4644..5465)
FT                   /note="HMMPfam hit to PF01904, Protein of unknown function
FT                   DUF72"
FT   CDS             5605..7698
FT                   /transl_table=11
FT                   /locus_tag="BP1980"
FT                   /product="probable ATP-dependent DNA helicase"
FT                   /note="Similar to Escherichia coli DNA helicase II UvrD or
FT                   MutU or PdeB or Rad or RecL or B3813 SW:UVRD_ECOLI (P03018)
FT                   (720 aa) fasta scores: E(): 2.1e-28, 32.46% id in 687 aa,
FT                   and to Ralstonia solanacearum probable ATP-dependent DNA
FT                   helicase II protein rsp1276 TR:CAD18427 (EMBL:AL646083)
FT                   (710 aa) fasta scores: E(): 1.2e-168, 63.84% id in 697 aa"
FT                   /db_xref="GOA:Q7VX41"
FT                   /db_xref="InterPro:IPR014017"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX41"
FT                   /protein_id="CAE42260.1"
FT                   /translation="MSEPVSRAPAPADDPLAELNPAQREAAAYGVDAPASQALLVIAGA
FT                   GSGKTNTLAHRVAHLILHGADPQRMLLLTFSRRAAQEMERRVGGVLQRVMGLRAGHAAP
FT                   ALPWAGTFHSVGARLLRDCAPRIGLSEAFTVHDRGDAEDLMGIVRHELGLSATHNRFPL
FT                   KGTCLAIYSRVVNSQAPLAEVLRQAFPWCEAWEAELKRLFQAYVLAKQEQNVLDYDDLL
FT                   LYWAEMMRDAGLAADVGARFDHILVDEYQDTNRLQAAILLAMKPDGGGLTVVGDDAQSI
FT                   YSFRAASVRNILDFPQQFPGGAKVVTLERNYRSTQPILDASNAVIGLAAERYAKALWTD
FT                   RASSQRPELVSVSDEAGQARWVADQVLAQREGGATLKSQAALFRASSHSAALELELTRR
FT                   NIPFVKFGGLRFLEAAHVKDMLSVLRWAENPRSRLAGFRVAQLVPGIGPATAGKLMDAM
FT                   AQAADPLAAMREFQPGAAARQQWSEFVATYATLREARRPWPADVDAALQWYGPQLERIF
FT                   DDARVRRADLEQLARLAGGYPTRERFLTELTLDPPDATSDESGPPLRDEDYMILSTIHS
FT                   AKGQEWKSVYILNAVDGCMPSDMATGTAEEIEEERRLLYVAMTRARERLQVVVPQRFYV
FT                   HQQAGLGDRHVYGSRTRFISEAMLPLFEHLPKPPELPFDRARPIEPAAPRIDVVSRVRG
FT                   LFS"
FT   misc_feature    5659..6024
FT                   /note="HMMPfam hit to PF00580, UvrD/REP helicase"
FT   misc_feature    5731..5754
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   misc_feature    6187..6909
FT                   /note="HMMPfam hit to PF00580, UvrD/REP helicase"
FT   CDS             join(7777..7845,7847..8557)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP1981"
FT                   /product="putative magnesium transporter (Pseudogene)"
FT                   /note="Pseudogene. This CDS appears to have a large
FT                   deletion, relative to B. parapertussis and B.
FT                   bronchiseptica, following codon 23. The sequence has been
FT                   checked and believed to be correct. Similar to Rhizobium
FT                   loti metal-transport protein Mlr5644 TR:Q98BB9
FT                   (EMBL:AP003007) (335 aa) fasta scores: E(): 1.8e-42, 48.16%
FT                   id in 245 aa, and to Caulobacter crescentus magnesium and
FT                   cobalt transport protein cora, putative cc3181 TR:Q9A3M2
FT                   (EMBL:AE005982) (322 aa) fasta scores: E(): 2.4e-35, 44.89%
FT                   id in 245 aa"
FT                   /db_xref="PSEUDO:CAE42261.1"
FT   variation       7843..7845
FT                   /note="There is a ~204 bp deletion in pertussis, relative
FT                   to parapertussis and bronchiseptica, following this codon"
FT   misc_feature    7868..8554
FT                   /note="HMMPfam hit to PF01544, CorA-like Mg2+ transporter
FT                   protein"
FT   misc_feature    join(8381..8440,8468..8536)
FT                   /note="2 probable transmembrane helices predicted for
FT                   BP1981 by TMHMM2.0 at aa 172-191 and 201-223"
FT   CDS             8620..9258
FT                   /transl_table=11
FT                   /locus_tag="BP1982"
FT                   /product="putative nuclease"
FT                   /note="Similar to Escherichia coli YeaA protein YeaA
FT                   TR:Q9F541 (EMBL:AP002527) (171 aa) fasta scores: E():
FT                   3.3e-12, 35.58% id in 163 aa, and to Escherichia coli
FT                   protein ParB SW:PAB4_ECOLI (P22997) (281 aa) fasta scores:
FT                   E(): 1.2e-09, 31.22% id in 221 aa"
FT                   /db_xref="GOA:Q7VX40"
FT                   /db_xref="InterPro:IPR002071"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX40"
FT                   /protein_id="CAE42262.1"
FT                   /translation="MLRNKLQPRGGRRGLAGLLSALLLAALAALANWLWPQDHPQAPPA
FT                   RQTPAAGAGGVPAGSYALTGPIVNVADGDTVTLRAPGGQRRIRMDSIDAPEEGHGNEQP
FT                   GQPFAQASRQHLAGLVAGKTLTAQCYERDQFDRDVCALILPDGRSANRAQVEAGYAWAY
FT                   TARRGDYLRDPAMPGLQRQAREAGRGLWAQSGAIEPWKWRYDCWRQRRC"
FT   misc_feature    8620..8712
FT                   /note="Signal peptide predicted for BP1982 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.913 between residues 31 and 32"
FT   misc_feature    8800..9198
FT                   /note="HMMPfam hit to PF00565, Staphylococcal nuclease
FT                   homologue"
FT   misc_feature    8833..8907
FT                   /note="ScanRegExp hit to PS01123, Thermonuclease family
FT                   signature 1."
FT   misc_feature    8968..8991
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   CDS             9355..11604
FT                   /transl_table=11
FT                   /locus_tag="BP1983"
FT                   /product="putative extracellular solute-binding protein"
FT                   /note="no significant database matches"
FT                   /db_xref="GOA:Q7VX39"
FT                   /db_xref="InterPro:IPR000914"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX39"
FT                   /protein_id="CAE42263.1"
FT                   /translation="MTGMSRLLRIAALLLLGAMAGCSRESPINSPYPAGAMADNALYTA
FT                   FVKRSPKYLDPASSYSTDETPYTYNIYEPLYGYHYLKRPYELVPRAAAAIDAPRYLDAQ
FT                   GRELPADAPGAQIAESVYDIRLRPGIRFQPHPAFARRADGGYQYFPLAEDELADKFYIP
FT                   DFPATGSRELVADDYVYALRRLASPRVVSPIYSLMADHIVGMKDYGDRLRARDQALRRD
FT                   LPGGARTLPWLDLREADGFAGVQALDAHTLRIRVIGKYPQFKYWLAMTFTAPVPWEADR
FT                   FYSQPGMAEHDLSLNTWPVGTGPYMLVESRQNWRHVLARNPNFRGAPYPCEGEPQDRAD
FT                   GLLADCGKPTPFIDRVVFSVEKEAVPLTGKFMQGYYDVPQVERGEYGVSMLVAAGDSPD
FT                   KAALYRYHGIRLPTTVETSNWYMGFNWLDPVVGKGDTPAQQERNRKLRQAISIAFDWEE
FT                   YVAVFENSQAQVAYGPVPPGVLGYKPPPEGYNPVVYDLADGKPVRKPLDTARRLLAEAG
FT                   YPDGRNALTGAPLVLYYDAMTGAGASPMFDWMRRQLAKLGIQMDVRSTDYNRFQDKMRR
FT                   GTAQLFLWGWNADYPDAENFLFLLYGPNAKASSGGENAANYANAEFDHLFEQMKLLDDG
FT                   PEKEALIARMTAIVQRDAPWMFGYFPMSGGAYQQWVGNAKPTQMVRNTLQFMKIDPATR
FT                   VARIDEWNRPLWWPLGVLVLLLALVIWPSYRALKRRERQTVYGARAAASTPEQQP"
FT   misc_feature    9355..9468
FT                   /note="Signal peptide predicted for BP1983 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.995) with cleavage site
FT                   probability 0.771 between residues 38 and 39"
FT   misc_feature    9388..9420
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    9865..9921
FT                   /note="HMMPfam hit to PF00496, Bacterial extracellular
FT                   solute-binding proteins, family 5"
FT   misc_feature    10234..10326
FT                   /note="HMMPfam hit to PF00496, Bacterial extracellular
FT                   solute-binding proteins, family 5"
FT   misc_feature    10678..11337
FT                   /note="HMMPfam hit to PF00496, Bacterial extracellular
FT                   solute-binding proteins, family 5"
FT   misc_feature    10867..10896
FT                   /note="ScanRegExp hit to PS00215, Mitochondrial energy
FT                   transfer proteins signature."
FT   misc_feature    11467..11535
FT                   /note="1 probable transmembrane helix predicted for BP1983
FT                   by TMHMM2.0 at aa 705-727"
FT   CDS             11601..12578
FT                   /transl_table=11
FT                   /locus_tag="BP1984"
FT                   /product="putative oligopeptide transport system permease
FT                   protein"
FT                   /note="Similar to Bacillus subtilis oligopeptide transport
FT                   system permease protein AppB SW:APPB_BACSU (P42062) (317
FT                   aa) fasta scores: E(): 6.3e-22, 28.52% id in 333 aa, and to
FT                   Streptococcus pneumoniae R6 ABC transporter
FT                   membrane-spanning permease-oligopeptide transport AppB
FT                   TR:AAK99996 (EMBL:AE008491) (331 aa) fasta scores: E():
FT                   1.5e-21, 28.31% id in 332 aa"
FT                   /db_xref="GOA:Q7VX38"
FT                   /db_xref="InterPro:IPR000515"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX38"
FT                   /protein_id="CAE42264.1"
FT                   /translation="MTGYVIRRLLYGVLILIGVNLFTFVLFFAINTPDDMARLAIGGQR
FT                   VSQDAIEKWKTERGYDKPLFLNTRAEGAARYTDTVFYQRSVPLLAMDFGASDGGRDIGR
FT                   EIRTRMGPSLALALPTFVLGLFASVVFSLTLVYFRATRLDFWGVVLCVVLLSISSLFYI
FT                   IAGQWLFSKLLRLAPYSGFADGLDMVKFLAVPVVVAIIARLGPEARFYRTLFLEEIGKD
FT                   YVRTARAKGLSESVVLFRHVLRNAMLPILTGTVSAIPLLFMGSLIAESFFGIPGLGSYT
FT                   IDAINAQDFSIVRAMVFLGSALYIVGLIFADISYTLADPRVRFE"
FT   misc_feature    join(11625..11693,11946..12014,12033..12101,12144..12212,
FT                   12348..12416,12474..12542)
FT                   /note="6 probable transmembrane helices predicted for
FT                   BP1984 by TMHMM2.0 at aa 9-31, 116-138, 145-167, 182-204,
FT                   250-272 and 292-314"
FT   misc_feature    12243..12458
FT                   /note="HMMPfam hit to PF00528, Binding-protein-dependent
FT                   transport systems inner membrane component"
FT   misc_feature    12246..12332
FT                   /note="ScanRegExp hit to PS00402, Binding-protein-dependent
FT                   transport systems inner membrane comp. sign. Confirmed by
FT                   InterPro eMOTIF pattern match."
FT   CDS             12584..14035
FT                   /transl_table=11
FT                   /locus_tag="BP1985"
FT                   /product="putative oligopeptide transport integral membrane
FT                   protein"
FT                   /note="Similar to Streptomyces coelicolor oligopeptide
FT                   transport integral membrane protein Sc2a11.10 TR:O86571
FT                   (EMBL:AL031184) (335 aa) fasta scores: E(): 5.7e-22, 32.79%
FT                   id in 247 aa, and to Deinococcus radiodurans peptide ABC
FT                   transporter, permease protein Dr0958 TR:Q9RVR4
FT                   (EMBL:AE001948) (332 aa) fasta scores: E(): 3.3e-18, 31.68%
FT                   id in 243 aa"
FT                   /db_xref="GOA:Q7VX37"
FT                   /db_xref="InterPro:IPR000515"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX37"
FT                   /protein_id="CAE42265.1"
FT                   /translation="MPLFVFLWTDIALYLLVAAVLAYAWRVRRSPTLRATWGRVARDAP
FT                   AMCSAVVLMCFVVVGLLDSFHYRARLAPAPGVTADAPPAYAPVVRSALDGLLATTVLAR
FT                   PEKTYSEPLAVRQFTKETLLIDGKPQRDFPLLRSGGAHLQDPDAQRWPDLRQRFWTGLG
FT                   LGAAAALAGGLLLVLALARRRASLRAALADLAANRTELPWRAMWITYAIICLLALTVSM
FT                   LAGGYHVLGTDRTGNDVLWQALKSVRTALIIGSLTTLAMLPPALAFGIAAGYFKGKADD
FT                   AIQYLYTTLTSIPSVLLVAACALMMQVYIDNHAELFDTSAARADLRLFLLCMILGLTGW
FT                   AGLCRLLRAETLKLRELEYVQAARAFGVSHWRIMTRHLLPNVMHIVLITVVLEFSGLVL
FT                   YEAVLLYLGIGVDPSMNSFGSMIDSARLEMSRDPMIWWNLLAAFGFMLALVLAANLFAD
FT                   AVRDAFDPRTRRFRPARAAAAGALP"
FT   misc_feature    join(12596..12664,12701..12769,13055..13123,13205..13273,
FT                   13331..13399,13436..13504,13562..13630,13727..13795,
FT                   13886..13954)
FT                   /note="9 probable transmembrane helices predicted for
FT                   BP1985 by TMHMM2.0 at aa 5-27, 40-62, 158-180, 208-230,
FT                   250-272, 285-307, 327-349, 382-404 and 435-457"
FT   misc_feature    13634..13861
FT                   /note="HMMPfam hit to PF00528, Binding-protein-dependent
FT                   transport systems inner membrane component"
FT   misc_feature    13637..13723
FT                   /note="ScanRegExp hit to PS00402, Binding-protein-dependent
FT                   transport systems inner membrane comp. sign. Confirmed by
FT                   InterPro eMOTIF pattern match."
FT   CDS             14032..15708
FT                   /transl_table=11
FT                   /locus_tag="BP1986"
FT                   /product="putative ABC transporter, ATP-binding protein"
FT                   /note="Similar to Agrobacterium tumefaciens MoaD TR:O50270
FT                   (EMBL:AF242881) (588 aa) fasta scores: E(): 2.2e-81, 48.35%
FT                   id in 548 aa, and to Rhizobium meliloti putative peptide
FT                   transport ATP-binding ABC transporter protein smc04288
FT                   TR:CAC46528 (EMBL:AL591789) (593 aa) fasta scores: E():
FT                   3.3e-86, 48.91% id in 554 aa"
FT                   /db_xref="GOA:Q7VX36"
FT                   /db_xref="InterPro:IPR013563"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX36"
FT                   /protein_id="CAE42266.1"
FT                   /translation="MTASAPLLRIEGLDVDVAGESGVTHAVKRLQLAVAQGETFALVGE
FT                   SGSGKSMTALALLRLLPDAGRIVGGQIELGGTDLNDLSERAMRGVRGGRIGIIFQEPAT
FT                   SLNPVMRVGDQIVETLAAHTPLRGAAARERAIDWLRRVGIPEPERRIDDYPFQFSGGQK
FT                   QRLMIAIALAAEPKLLIADEPTTALDVTVQAQVLELLAGIQREMGMAVLLITHDLAVVR
FT                   NVAHHVALMRGGEIVESADARTFFERPRHPYARELFEAIPTFAKRGRPLSAQGRAADQG
FT                   KAAPEAGAVVLDVQDLLVHYPVRKGVLRRVAAWVEAVNGVTFTLRAGETLALLGESGCG
FT                   KTTTGKALLRLVEGARVQGRAMLDGHDLLGASRRELRRLRQDIQIVFQDPFASLDPRMR
FT                   VGDILEEGIASLRPELAASARRARAVGLLERVGLPADTPTRYPHEFSGGQRQRIAIARA
FT                   LAVEPKVLICDEPTSALDVSVQAQILDLLRDLQAELGIAYLFITHNFGVVEYLADRIAV
FT                   MHGGRIVEMGPADTVLHAPRHEMTQRLLAAVPRLRFGAENE"
FT   misc_feature    14140..14733
FT                   /note="HMMPfam hit to PF00005, ABC transporter"
FT   misc_feature    14161..14184
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   misc_feature    14503..14547
FT                   /note="ScanRegExp hit to PS00211, ABC transporters family
FT                   signature. Confirmed by InterPro eMOTIF pattern match."
FT   misc_feature    15013..15594
FT                   /note="HMMPfam hit to PF00005, ABC transporter"
FT   misc_feature    15034..15057
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   misc_feature    15364..15408
FT                   /note="ScanRegExp hit to PS00211, ABC transporters family
FT                   signature. Confirmed by InterPro eMOTIF pattern match."
FT   CDS             complement(15757..16308)
FT                   /transl_table=11
FT                   /locus_tag="BP1987"
FT                   /product="probable MarR-family transcriptional regulator"
FT                   /note="Similar to Streptomyces coelicolor hypothetical 19.0
FT                   kDa protein Sc10b7.04 TR:Q9X957 (EMBL:Y13833) (174 aa)
FT                   fasta scores: E(): 1.5e-07, 37.24% id in 145 aa, and to
FT                   Bacillus subtilis YcgE protein YcgE TR:O31472 (EMBL:Z99105)
FT                   (155 aa) fasta scores: E(): 1.8e-07, 32.85% id in 140 aa"
FT                   /db_xref="GOA:Q7VX35"
FT                   /db_xref="InterPro:IPR000835"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX35"
FT                   /protein_id="CAE42267.1"
FT                   /translation="MLDIDRISQQDQRVSSGDPLGHDRRPDSVEEIAQVLARQLTVYMA
FT                   ASQAAMAERLGLSLTELKALDLVLEFDALPTGQLGQLLGISWGGATALINRLEAAGYVQ
FT                   RGRHPLDRRVIVIRPVAERCRALAEERRAAAEEVTFLSRQYDAHQLATVHAFLTQYARS
FT                   LRHETLMWLQSRHGRDFVND"
FT   misc_feature    complement(15829..16140)
FT                   /note="HMMPfam hit to PF01047, MarR family"
FT   CDS             complement(join(16342..17034,17039..17863))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP1988"
FT                   /product="putative membrane protein (Pseudogene)"
FT                   /note="Pseudogene. This CDS appears to have a frameshift
FT                   mutation following codon 275. The frameshift occurs within
FT                   a polymeric tract of (GC)4. The sequence has been checked
FT                   and believed to be correct. No significant database
FT                   matches"
FT                   /db_xref="PSEUDO:CAE42268.1"
FT   variation       complement(17036..17043)
FT                   /note="(GC)4 in pertussis; (GC)2 in parapertussis and
FT                   bronchiseptica"
FT   CDS             complement(18168..19880)
FT                   /transl_table=11
FT                   /locus_tag="BP1989"
FT                   /product="putative exported protein"
FT                   /note="Similar to Serratia marcescens hemolysin activator
FT                   protein precursor ShlB SW:HLYB_SERMA (P15321) (557 aa)
FT                   fasta scores: E(): 0.016, 23.73% id in 535 aa, and to
FT                   Pseudomonas aeruginosa hypothetical protein PA4624
FT                   TR:Q9HVG7 (EMBL:AE004876) (568 aa) fasta scores: E():
FT                   7.2e-25, 25.75% id in 567 aa"
FT                   /db_xref="InterPro:IPR013686"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX34"
FT                   /protein_id="CAE42269.1"
FT                   /translation="MKRTIATDLFCCSLVAGLAALPAASRADGPLRGNPVDALPQLERP
FT                   TAPAAPAPALQAPTPEQRAVQARLAQRIVPRNFDVAGVHALPFDQVAAFLTPLAGKEIT
FT                   VAQLVQQVDRITELYRSSGYPLSFALVQNQDFANGLVVVTVVEGHIGNVRIDGDIGNAK
FT                   RRLETLAGPLLAEKPLTQATLERQLNLMRIVPGVKITPSLDLPRRADGATELVIAATHG
FT                   KFTSNGGVADLGTGMQPLVDLGAHSLTPLGEQLKLTTSIPLNSDDVKYVAGEARLPIGA
FT                   DGFSIKVDGYHYQAKPQDDAIEYLGFDRKVTNDRIGVGVSYPFLLNNQRSLTGTLGMYA
FT                   VNAKDRYTHRDSDRWLQQDTRVRAATAELRYIDILPQRSTDLTVSVSKGFDAMGAKKSI
FT                   DTNYGYSAIPDVDLDFTRFNLNVRQAFTLPAQFGLVLSGAGQYSSDILPSSEQVSFGSW
FT                   RFAMGYPQGEQSGDKGVGVSAEVNRRFGLGWRYLSAVQPYAMADYARTWYNNKGLQELN
FT                   ERHLSSLSLGVRFTDDKFYLFDFNVAKPVGSSTVNGDRDVRFNANYSLFYDAL"
FT   misc_feature    complement(19800..19880)
FT                   /note="Signal peptide predicted for BP1989 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.773 between residues 27 and 28"
FT   CDS             20337..21155
FT                   /transl_table=11
FT                   /locus_tag="BP1990"
FT                   /product="putative membrane protein"
FT                   /note="N-terminus is similar to the N-terminal region of
FT                   similar to Pseudomonas aeruginosa hypothetical protein
FT                   PaA1727 TR:Q9I310 (EMBL:AE004599) (685 aa) fasta scores:
FT                   E(): 1.5e-17, 38.62% id in 189 aa. Similar to N-terminal
FT                   region of Pseudomonas carboxydovorans hypothetical protein
FT                   CoxC TR:Q9KX27 (EMBL:X82447) (402 aa) fasta scores: E():
FT                   6.7e-16, 33.33% id in 264 aa"
FT                   /db_xref="InterPro:IPR005330"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX33"
FT                   /protein_id="CAE42270.1"
FT                   /translation="MNPGDIVPLSLQPHVVALSFLIAFFGSYVALVAAARIRASVHDGV
FT                   NVRGFVLIAAVSMGGIGIWGMHFIGMQAQRMPFEVGYALWLTLLSAAVAVAFSGMAFWY
FT                   VGRQAFSLGRCVVAGVLAGLGVAAMHYIGIGAMRMPAMFLWNVELVALSVAVAVVSAIV
FT                   ALWLAFNVQREWQRVAAAAVMALAVCGMHYTGAAAGVVVCTTAQTFADAQVGGVALPYV
FT                   AFAGALAVLLAMRWQLHRSYRGHQDRTARRIDALLRETTTGRPVRGHPGR"
FT   misc_feature    join(20379..20447,20481..20540,20583..20651,20670..20738,
FT                   20781..20849,20874..20942,20970..21038)
FT                   /note="7 probable transmembrane helices predicted for
FT                   BP1990 by TMHMM2.0 at aa 15-37, 49-68, 83-105, 112-134,
FT                   149-171, 180-202 and 212-234"
FT   CDS             21253..21429
FT                   /transl_table=11
FT                   /locus_tag="BP1991"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Caulobacter crescentus pilus subunit
FT                   protein CC2948 TR:Q9L720 (EMBL:AF229646) (59 aa) fasta
FT                   scores: E(): 4.6e-05, 54% id in 50 aa, and to Rhizobium
FT                   meliloti probable pSymA plasmid PilA2 pilus assembly
FT                   protein TR:AAK65511 (EMBL:AE007272) (56 aa) fasta scores:
FT                   E(): 0.00024, 50% id in 54 aa"
FT                   /db_xref="InterPro:IPR007047"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX32"
FT                   /protein_id="CAE42271.1"
FT                   /translation="MLTQLKNFWRDEEGATAIEYGLIVGLIAVVIIGSVSLLGETLKGF
FT                   FDTIQTELSAEAP"
FT   misc_feature    21295..21363
FT                   /note="1 probable transmembrane helix predicted for BP1991
FT                   by TMHMM2.0 at aa 15-37"
FT   CDS             21499..22023
FT                   /transl_table=11
FT                   /locus_tag="BP1992"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Bacillus halodurans late competence
FT                   protein required for processing and translocation BH3035
FT                   TR:Q9K8H1 (EMBL:AP001517) (162 aa) fasta scores: E():
FT                   0.0035, 26.41% id in 159 aa, and to the C-terminal region
FT                   of Aeromonas hydrophila type 4 prepilin-like proteins
FT                   leader peptide processing enzyme [includes: leader
FT                   peptidase; N-methyltransferase] TapD SW:LEP4_AERHY (P45794)
FT                   (290 aa) fasta scores: E(): 0.45, 27.84% id in 176 aa"
FT                   /db_xref="GOA:Q7VX31"
FT                   /db_xref="InterPro:IPR000045"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX31"
FT                   /protein_id="CAE42272.1"
FT                   /translation="MENLLREHVWWAVYVAFNLLVVFYDLRVRRVPNRLLIAAALAQCA
FT                   WLAWHAWGVQATPAAGARGWSDAGLGFVLGMAFVMLWRMRLMGAGDVKYLAVLGLAIGA
FT                   WPWLLVLVLAGLPSLAHALAQGFQVVRDPRRPRRGIPYAAYLALAAISLALMPSSSPWC
FT                   SWCSSWFFTAV"
FT   misc_feature    join(21526..21582,21601..21660,21688..21744,21778..21846,
FT                   21916..21984)
FT                   /note="5 probable transmembrane helices predicted for
FT                   BP1992 by TMHMM2.0 at aa 10-28, 35-54, 64-82, 94-116 and
FT                   140-162"
FT   CDS             21984..22427
FT                   /transl_table=11
FT                   /locus_tag="BP1993"
FT                   /product="putative exported protein"
FT                   /note="Poor database matches. Similar to the C-terminal
FT                   region of Pseudomonas aeruginosa hypothetical protein
FT                   PA4294 TR:Q9HWA6 (EMBL:AE004845) (168 aa) fasta scores:
FT                   E(): 0.0027, 32.16% id in 143 aa"
FT                   /db_xref="InterPro:IPR012495"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX30"
FT                   /protein_id="CAE42273.1"
FT                   /translation="MFVVFFVVLYGGLTWAFIFAAQQSLNHAAEEGARAALQWPGSTAL
FT                   EPRAARAGQLAGQYADWVRRMGGAPATVTVCGSGGPIGGLAAGPCSGIALAADQIEVLV
FT                   RYPYAQAPLVPLLPGMGVAVPGTLSARASVRVGGPVAAAGEGA"
FT   misc_feature    21984..22043
FT                   /note="Signal peptide predicted for BP1993 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.795) with cleavage site
FT                   probability 0.444 between residues 20 and 21"
FT   CDS             22429..22905
FT                   /transl_table=11
FT                   /locus_tag="BP1994"
FT                   /product="putative exported protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein PA5409 TR:Q9HTF5 (EMBL:AE004953) (186 aa) fasta
FT                   scores: E(): 2.5, 29.8% id in 151 aa. N-terminus is similar
FT                   to N-terminal region of Rhizobium meliloti hypothetical
FT                   protein SMA1572 TR:AAK65512 (EMBL:AE007272) (141 aa) fasta
FT                   scores: E(): 0.029, 38.82% id in 85 aa"
FT                   /db_xref="InterPro:IPR012495"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX29"
FT                   /protein_id="CAE42274.1"
FT                   /translation="MRAISFPSRRRAQRGAAAVEFALVILLMLALMLGVLGYGALFWAQ
FT                   QKLSKAAGEGAQALLQANLRGAAASGVAGCEAARQEAGWLAIECVSETLDCAWTASDGG
FT                   PAACAQVRVRYELAGWPLLATLRGAAGAVPGARAWFPDVLSAQAIVQIAQEPTT"
FT   misc_feature    22429..22539
FT                   /note="Signal peptide predicted for BP1994 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.894) with cleavage site
FT                   probability 0.480 between residues 37 and 38"
FT   CDS             22902..23843
FT                   /transl_table=11
FT                   /locus_tag="BP1995"
FT                   /product="putative membrane protein"
FT                   /note="N-terminus is similar to the N-terminal region of
FT                   Pseudomonas aeruginosa hypothetical protein PA4305
FT                   TR:Q9HW95 (EMBL:AE004846) (303 aa) fasta scores: E():
FT                   3.9e-14, 36.36% id in 242 aa, and Rhizobium meliloti
FT                   putative pilus assembly signal peptide protein TR:CAC41527
FT                   (EMBL:AL591782) (269 aa) fasta scores: E(): 0.0098, 33.2%
FT                   id in 250 aa"
FT                   /db_xref="InterPro:IPR013974"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX28"
FT                   /protein_id="CAE42275.1"
FT                   /translation="MSTVAKIAAAVLALVALGLGYAAFMLATRPAPPPPKPVAQRASAA
FT                   LPTYPVVVAGKPIAAGDRLAADLLKIERWPVQPANGYAESEALLGQMVRQDIPAGEPVT
FT                   APMLARGLARHLAPGERAVTIAVDELSGAQNRILPGDLVDVFVVMDRGIEVPGTQTRLL
FT                   QSRIKVLAYGQRSVDGPPQGEEKPSVAQRGQPPAAPRNAMLAVPVERVNELLLAAKAGR
FT                   LQLVLRSPEDIDVPDLALFPERAPVLALRAGLTAEQQRDGKDGVNQAYAGEILPQLAGP
FT                   TAAPVPKPRAAGGGGGRSIEVVRGGDVQAVRY"
FT   misc_feature    22920..22979
FT                   /note="1 probable transmembrane helix predicted for BP1995
FT                   by TMHMM2.0 at aa 7-26"
FT   CDS             23899..25248
FT                   /transl_table=11
FT                   /locus_tag="BP1996"
FT                   /product="putative type II secretion system protein"
FT                   /note="Similar to Pseudomonas aeruginosa probable type II
FT                   secretion system protein PA4304 TR:Q9HW96 (EMBL:AE004846)
FT                   (416 aa) fasta scores: E(): 1e-32, 39.73% id in 453 aa.
FT                   C-terminus is similar to the C-terminal region of Aeromonas
FT                   salmonicida general secretion pathway protein D precursor
FT                   ExeD SW:GSPD_AERSA (P45778) (678 aa) fasta scores: E():
FT                   6.1e-12, 26.47% id in 374 aa"
FT                   /db_xref="GOA:Q7VX27"
FT                   /db_xref="InterPro:IPR001775"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX27"
FT                   /protein_id="CAE42276.1"
FT                   /translation="MKQHKVGRHWAGWAMALACLGAAAPLAAQPAAPAGAAQARELLLE
FT                   VKGQQPLRLDAAPSRVAIADPQVADVKVLAPGVGRPGEVLLIGRQAGTTELRVWSRGSR
FT                   DPQVWTVRVLPQVQAALARRGVGGGAQVDMAGDSGVVTGMAPSAEAHRGAAEAAAAAAG
FT                   GNDKVVDMSQINTSGVVQVEVKVVELARSVMKDVGINFRADSGPWSGGVSLLPDLASGG
FT                   MFGMLSYTSRDFSASLALLQNNGMARVLAEPTLLAMSGQSASFLAGGEIPIPVSAGLGT
FT                   TSVQFKPFGIGLTVTPTVISRERIALKVAPEASELDYANGISSIDSNNRITVIPALRTR
FT                   KADTMVELGDGETFVISGLVSRQTKASVNKVPLLGDLPIIGAFFRNVQYSQEDRELVIV
FT                   VTPRLVRPIARGVTLPLPGARQEVSDAGFNAWGYYLLGPMSGQQMPGFSQ"
FT   misc_feature    23899..23982
FT                   /note="Signal peptide predicted for BP1996 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.613 between residues 28 and 29"
FT   misc_feature    23923..23955
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    23938..25116
FT                   /note="HMMPfam hit to PF00263, Bacterial type II and III
FT                   secretion system protein"
FT   CDS             25245..26594
FT                   /transl_table=11
FT                   /locus_tag="BP1997"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Ralstonia solanacearum probable pilus
FT                   assembly protein Cpae2 or Rsp1086 or Rs02593 SWALL:Q8XQY2
FT                   (EMBL:AL646082) (439 aa) fasta scores: E(): 9.8e-23, 34.31%
FT                   id in 440 aa"
FT                   /db_xref="GOA:Q7VX26"
FT                   /db_xref="InterPro:IPR001789"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX26"
FT                   /protein_id="CAE42277.1"
FT                   /translation="MTNMKTHAREWAALDKSTCFLFCSGDNDVAQQLGHAIGDLGLLMQ
FT                   ELPEPEQLARRLADIDPQVVFLDFTGGQADPGKLLLAADLARVLARVAPAVPRVAVGYL
FT                   AQPDGAIAALRAGVSDFVDPSVSPDEVHGVVQRLVSNRRIGGGSGGEHRSVLILGARPG
FT                   VGASTLAVHMAGLTQERMAQAALARQGAVAGKPARSAEVMAAQLPLSDRVGVLDLGWPI
FT                   GDCLLYLNISSDFDFAEAARNLSRLDGTLLNSAMAHTASGVSALALPREVEQVRALSPN
FT                   DSLLLFERLRQHYGTLVTDAGGLANPEFVAKLARASHETWLVTDQSVSALVSLAGAVQE
FT                   LEQFHVEKSALRLVVNRYDERYGMSAAQIAERFGLELAGTLPDRTLPLMVCTNQGRLLH
FT                   EQAERDIYVRAVQTLVDRLLAGSEAPRARHNSWLANWLPGVHRLTNVVES"
FT   CDS             join(26603..27442,27441..27956)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP1998"
FT                   /product="bacterial type II secretion system protein
FT                   (pseudogene)"
FT                   /note="Pseudogene. This CDS appears to have a frameshift
FT                   mutation following codon 280. The sequence has been checked
FT                   and believed to be correct. Similar to Pseudomonas
FT                   aeruginosa probable type II secretion system protein PA4302
FT                   TR:Q9HW98 (EMBL:AE004846) (421 aa) fasta scores: E():
FT                   4.7e-70, 50.88% id in 395 aa, and to Agrobacterium
FT                   tumefaciens AGR_C_373p TR:AAK86036 (EMBL:AE007962) (440 aa)
FT                   fasta scores: E(): 3.5e-64, 44.88% id in 430 aa."
FT                   /db_xref="PSEUDO:CAE42278.1"
FT   misc_feature    26630..26680
FT                   /note="ScanRegExp hit to PS00237, G-protein coupled
FT                   receptors family 1 signature."
FT   misc_feature    join(27185..27442,27441..27605)
FT                   /note="HMMPfam hit to PF00437, Bacterial type II secretion
FT                   system protein"
FT   misc_feature    27272..27295
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   variation       27442..27444
FT                   /note="CCC in pertussis; C(AT)CC in parapertussis and
FT                   bronchiseptica"
FT   CDS             27953..28873
FT                   /transl_table=11
FT                   /locus_tag="BP1999"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein PA4301 TR:Q9HW99 (EMBL:AE004846) (294 aa) fasta
FT                   scores: E(): 4e-19, 33.01% id in 309 aa, and to Rhizobium
FT                   loti hypothetical protein MLR6484 TR:Q989C6 (EMBL:AP003009)
FT                   (323 aa) fasta scores: E(): 1.8e-08, 26.79% id in 306 aa"
FT                   /db_xref="InterPro:IPR018076"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX25"
FT                   /protein_id="CAE42279.1"
FT                   /translation="MSLMAWLLGALALALLAAAALLLRQARDGARRQASEAFLERQLEL
FT                   RPGQPGASQASAARRRLPISNGAWRQLLLRAGVEPTPRFLAASVGAHLGVPALAWLFGG
FT                   WISAAAALLLVALLWYFHLWLKADRRRMVHQLPTFLDALVRLITIGNSVNAAFQNALGS
FT                   VEQPLLEVLQRADSQVRSGKDLDAALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVL
FT                   ERMAAFMRDLEQARDELTALSAEVRLSAWILALLPIGLALFIIIFNNQLFMGMWHDPMG
FT                   FRLLVFAMLLQAGGSYWLYRMARSV"
FT   misc_feature    27953..28009
FT                   /note="Signal peptide predicted for BP1999 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.680 between residues 19 and 20"
FT   misc_feature    join(27962..28021,28202..28258,28268..28327,28694..28753,
FT                   28796..28852)
FT                   /note="5 probable transmembrane helices predicted for
FT                   BP1999 by TMHMM2.0 at aa 4-23, 84-102, 106-125, 248-267 and
FT                   282-300"
FT   CDS             join(28882..28974,28974..29867)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2000"
FT                   /product="putative membrane protein (Pseudogene)"
FT                   /note="Pseudogene. This CDS appears to have a frameshift
FT                   mutation following codon 31. The sequence has been checked
FT                   and believed to be correct. Similar to Ralstonia
FT                   solanacearum putative tight adherence TadC related
FT                   transmembrane protein RSP1083 TR:CAD18234 (EMBL:AL646082)
FT                   (326 aa) fasta scores: E(): 9.6e-39, 41.08% id in 331 aa,
FT                   and to Pseudomonas aeruginosa hypothetical protein PA4300
FT                   TR:Q9HWA0 (EMBL:AE004846) (303 aa) fasta scores: E():
FT                   5.5e-17, 30.28% id in 317 aa. Contains a frameshift after
FT                   codon 32"
FT                   /db_xref="PSEUDO:CAE42280.1"
FT   misc_feature    28882..28974
FT                   /note="Signal peptide predicted for BP1996 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.613 between residues 31 and 32"
FT   variation       28973..28974
FT                   /note="(C)2 in pertussis; (C)3 in parapertussis and
FT                   bronchiseptica"
FT   misc_feature    join(29217..29276,29304..29372,29763..29831)
FT                   /note="3 probable transmembrane helices predicted for
FT                   BP2000 by TMHMM2.0 at aa 81-100, 110-132 and 263-285"
FT   CDS             29867..30709
FT                   /transl_table=11
FT                   /locus_tag="BP2001"
FT                   /product="putative lipoprotein"
FT                   /note="Similar to N-terminal approx. 250 aa of Pseudomonas
FT                   aeruginosa hypothetical protein PA4299 TR:Q9HWA1
FT                   (EMBL:AE004846) (245 aa) fasta scores: E(): 9.8e-12,
FT                   34.363% id in 259 aa"
FT                   /db_xref="GOA:Q7VX24"
FT                   /db_xref="InterPro:IPR019734"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX24"
FT                   /protein_id="CAE42281.1"
FT                   /translation="MKRSHRLGLALAAAAPLLLGGCQTSNVDTAMQLMQQQQQEQALAQ
FT                   QREDADERKRLAAKPELALSLIREAQREGRYFASLAYLDAYRQNFGDSPQVAVMRADAL
FT                   RMTGQIAQSESAYRALTGTDQAAAAWHGLGLLAGGRGDFDQAADYLARATRLRPTDANM
FT                   LNDLGYALLRAGDPRGARLPLGQAAELAPANAKVLGNLALLLLVEGDYAGARQVMDRAA
FT                   LSPRARQRVQELASQTRHAGVSAAAAVPVAQAAGREAMVMPVLQRPVMDRFGNPPLLQ"
FT   misc_feature    29867..29947
FT                   /note="Signal peptide predicted for BP2001 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.449 between residues 27 and 28"
FT   misc_feature    29900..29932
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    30245..30346
FT                   /note="HMMPfam hit to PF00515, TPR Domain"
FT   misc_feature    30347..30448
FT                   /note="HMMPfam hit to PF00515, TPR Domain"
FT   CDS             join(30728..30937,30937..31119)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2002"
FT                   /product="putative exported protein (pseudogene)"
FT                   /note="Tentative CDS prediction; unknown function"
FT                   /db_xref="PSEUDO:CAE42282.1"
FT   CDS             31133..33376
FT                   /transl_table=11
FT                   /locus_tag="BP2003"
FT                   /product="putative exported protein"
FT                   /note="Similar, except at C-terminus, to Pseudomonas
FT                   aeruginosa hypothetical protein PA4297 TR:Q9HWA3
FT                   (EMBL:AE004846) (556 aa) fasta scores: E(): 2.8e-12,
FT                   28.798% id in 441 aa, Rhizobium meliloti hypothetical
FT                   protein SMC00158 TR:CAC46429 (EMBL:AL591788) (577 aa) fasta
FT                   scores: E(): 1e-07, 25.175% id in 572 aa and to
FT                   Agrobacterium tumefaciens hypothetical protein AGR_C_2962
FT                   TR:AAK87388 (EMBL:AE008083) (546 aa) fasta scores: E():
FT                   4.1e-06, 23.833% id in 407 aa"
FT                   /db_xref="InterPro:IPR018705"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX23"
FT                   /protein_id="CAE42283.1"
FT                   /translation="MNVPRPLRARRRQRGSILIPAALAILIGVALLGAAQLGYFFYMKR
FT                   ELQKTADLAALTGVQVLSPGDEAACAAAGQAVRASVRANLGSRADDGLSIEPTCWRWAR
FT                   DEAELAPRYVREPADPSERYNAVAVVLGMPVRALFPFLGGRTLEVEAIAARPADPIAAF
FT                   SVGTGLLATGSGELTRLLKQVGLDIGGTAVLGYDIGLAGVKITPAGLLDALGIAVPTDI
FT                   SVAGLNQLLSANVSALDGVLDAVVRAASRDSLLDANVGLVQAIETAVGVKDLAVRLGSE
FT                   TAERAGGLFANIQAPDAASALNVELDALEVLATAIGVGTSGHAIACGVAVPLLMSGPAR
FT                   CSVVEPPSIAIGGVGATAYTSQIRVHAPLRLDTGSLLGGLVRLDLDIPLTVDVVNGHGT
FT                   IEALCHARDAAGRDLAVVSTRSSLLKICLGGPPAGLTGPELANWPFSTTASCDENLTRK
FT                   RLLGLELNLLGKRVNLASLNPDPPLVVPALQTTSEDDYYAGQRRSLGNELALGDTVKDL
FT                   VDALLAALIGNSLQGGAGLGGGDQGELRKDLAGKIWADTAAEVAACTPGASGKAGYDCR
FT                   RARWSRGIENIENYSNGLTGFLGGLSANTLGLLGNLVTLDVVGLLGNVVGLVGNLVDLL
FT                   GDILGGILGVLFPTNQCATWSLLGGYQGSEAGCVNELGKALANSTPPSGGNPPNAIVVL
FT                   LGYLLKPLADILNMIGADLLRPLIENVLGLRLGVTDVHMMSIDCDGKGVQLVY"
FT   misc_feature    31133..31231
FT                   /note="Signal peptide predicted for BP2003 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.997) with cleavage site
FT                   probability 0.461 between residues 33 and 34"
FT   CDS             33398..34789
FT                   /transl_table=11
FT                   /locus_tag="BP2004"
FT                   /product="putative response regulator"
FT                   /note="Similar, except at N-terminus, to Pseudomonas
FT                   aeruginosa type 4 fimbriae expression regulatory protein
FT                   PilR, pilR or PA4547 SW:PILR_PSEAE (Q00934) (445 aa) fasta
FT                   scores: E(): 2e-35, 40.123% id in 324 aa. Similar to many
FT                   other bacterial response regulators"
FT                   /db_xref="GOA:Q7VX22"
FT                   /db_xref="InterPro:IPR020441"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX22"
FT                   /protein_id="CAE42284.1"
FT                   /translation="MSDQAPACDAVDVYVWEGTSDIAFRAERALAGYEATVIHVDNSVA
FT                   LPPSRDAARPAVGLVSVSVMGDARFAGFDWLATQGIPVIWVAGEERNHDPRYYAPAYSY
FT                   TLPLAFTGAELRRLLFRLAGVARAAAVDEPRPAPAMIAVSPAMRGLLAEAEMFADARAN
FT                   VLVHGETGVGKERIARLLHDQSSWAGGPFVAVNCGAIPEGLFEAHFFGHAKGAFTGAVG
FT                   AHKGYFEQASGGTLFLDEIGDLPSYQQVKLLRVLEQSSVTRLGSTVAIPVEFRLVAATN
FT                   KDLRALVAQGEFRADLYYRLAVIELHIPNLEARGAAEKTAIFAALLRQQGIEDEPPAWL
FT                   LQRVAAARYPGNVRELSNLAERVAILRRQLRAWDQPRIEQVFERHAQATPLAPATPGDA
FT                   DAPAFNAAERAERERVLAALEANGWRRQDTAHHLGISRKVLWEKMRKLRLGEAQAETAD
FT                   GVADP"
FT   misc_feature    33815..34324
FT                   /note="HMMPfam hit to PF00158, Sigma-54 interaction domain"
FT   misc_feature    33887..33928
FT                   /note="ScanRegExp hit to PS00675, Sigma-54 interaction
FT                   domain ATP-binding region A signature. Confirmed by
FT                   InterPro eMOTIF pattern match."
FT   misc_feature    34073..34120
FT                   /note="ScanRegExp hit to PS00676, Sigma-54 interaction
FT                   domain ATP-binding region B signature. Confirmed by
FT                   InterPro eMOTIF pattern match."
FT   misc_feature    34415..34498
FT                   /note="HMMPfam hit to PF00158, Sigma-54 interaction domain"
FT   misc_feature    34442..34471
FT                   /note="ScanRegExp hit to PS00688, Sigma-54 interaction
FT                   domain C-terminal part signature. Confirmed by InterPro
FT                   eMOTIF pattern match."
FT   misc_feature    34667..34732
FT                   /note="Predicted helix-turn-helix motif with score 1157
FT                   (+3.13 SD) at aa 424-445, sequence WRRQDTAHHLGISRKVLWEKMR"
FT   CDS             34869..35564
FT                   /transl_table=11
FT                   /locus_tag="BP2005"
FT                   /product="putative lipoprotein"
FT                   /note="Unknown function"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX21"
FT                   /protein_id="CAE42285.1"
FT                   /translation="MKIRYLGAGARLTVAGLALSSLAACASAQSESRPVVQQVEEKQAA
FT                   AAPVEPPAPAPAARPASTVSELQGLIQARQVSELRTTYNGSYGASLLYKPDELTYYVAL
FT                   FQQKDFWRVLKTKSVNQAESTYRAFASKTAELAEVDIQRIRLQAEYAHAEKQLGARNAE
FT                   LTALQADQALRQQQEQQVAVRQAQSRQEADSLSEQRQEVRSQLRAMQRQIDALQAEQAR
FT                   VAAPARRGK"
FT   misc_feature    34869..34958
FT                   /note="Signal peptide predicted for BP2005 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.458 between residues 30 and 31"
FT   misc_feature    34911..34943
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             35664..36131
FT                   /transl_table=11
FT                   /locus_tag="BP2006"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Rhizobium loti hypothetical protein
FT                   MLL3449 TR:Q98G81 (EMBL:AP003002) (99 aa) fasta scores:
FT                   E(): 4.7e-06, 42.268% id in 97 aa, Caulobacter crescentus
FT                   hypothetical protein CC0827 TR:Q9A9Y4 (EMBL:AE005759) (145
FT                   aa) fasta scores: E(): 1.2e-05, 41.549% id in 142 aa and to
FT                   Agrobacterium tumefaciens hypothetical protein AGR_l_2637
FT                   TR:AAK89886 (EMBL:AE008331) (142 aa) fasta scores: E():
FT                   4.5e-05, 42.466% id in 146 aa"
FT                   /db_xref="InterPro:IPR009562"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX20"
FT                   /protein_id="CAE42286.1"
FT                   /translation="MALKVFDLQCEQGHVFEGWFGSHEDYDAQQARGQIACPVCESSRI
FT                   TKRLSAPRLNVAHLHQPAAAPAPAPAPAPESEAARMARLQAAVLRQVRELVRNTENVGA
FT                   RFAQEARRIHEGEADERPIRGTATPQERAELADDGIDVVSLPAFLDDERMQ"
FT   RBS             36176..36180
FT                   /note="possible RBS"
FT   CDS             36189..36893
FT                   /transl_table=11
FT                   /locus_tag="BP2007"
FT                   /product="putative ECF-family RNA polymerase sigma factor"
FT                   /note="Similar to Pseudomonas aeruginosa RNA polymerase
FT                   sigma-H factor AlgU or AlgT or PA0762 SW:RPSH_PSEAE
FT                   (Q06198) (193 aa) fasta scores: E(): 2.4e-14, 34.783% id in
FT                   184 aa and to others e.g. Rhizobium meliloti putative RNA
FT                   polymerase sigma factor protein TR:CAC49904 (EMBL:AL603647)
FT                   (227 aa) fasta scores: E(): 4.8e-28, 43.836% id in 219 aa"
FT                   /db_xref="GOA:Q7VX19"
FT                   /db_xref="HSSP:1OR7"
FT                   /db_xref="InterPro:IPR007627"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX19"
FT                   /protein_id="CAE42287.1"
FT                   /translation="MHPSSLQSQAPAPELAADAQLAARAAAGEDSAFETIMRRHNRLLF
FT                   RTARSILHSDAEAEDALQEAYLRAWRALDSFRADARLSTWLVRIVINESLGRLRRGQAQ
FT                   VIPLDAAMESTELQNQEWLHDAIDQQPDRQAMRAEIRRLMEARIDLLPDAFRSVFVLRA
FT                   VEELSVEEVAQALDIPEATVRTRFFRARGLLREGLSRDVDMAIGDAFSFDGQRCDRIVA
FT                   AVLARRGERAGA"
FT   misc_feature    36339..36506
FT                   /note="HMMPfam hit to PF00776, Sigma-70 factor (ECF
FT                   subfamily)"
FT   misc_feature    36687..36752
FT                   /note="Predicted helix-turn-helix motif with score 1244
FT                   (+3.42 SD) at aa 167-188, sequence LSVEEVAQALDIPEATVRTRFF"
FT   CDS             37040..37609
FT                   /transl_table=11
FT                   /locus_tag="BP2008"
FT                   /product="putative exported protein"
FT                   /note="Contains a region with similarity to bacterial
FT                   hypothetical proteins e.g. Deinococcus radiodurans
FT                   hypothetical protein DRA0258 TR:Q9RYQ1 (EMBL:AE001863) (288
FT                   aa) fasta scores: E(): 0.0007, 30.726% id in 179 aa"
FT                   /db_xref="GOA:Q7VX18"
FT                   /db_xref="InterPro:IPR017909"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX18"
FT                   /protein_id="CAE42288.1"
FT                   /translation="MSFLQISSPCAARRRFLGHGGLVLSAAAVALLAGKDALAAQAGSG
FT                   SSQDVQILNTALAAELEAIAAYQLDAESKLLDKPVLALALTFQGHHKEHADVLGKTVEK
FT                   LGGQPVAAKRSYAFPTSQLKSQADVLRFAAKLEQGAVSAYLGAVPLFANRDLSKAAASI
FT                   LGDEAMHWAVLRQALGEPPVPSAFVS"
FT   misc_feature    37040..37165
FT                   /note="Signal peptide predicted for BP2008 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.978) with cleavage site
FT                   probability 0.817 between residues 42 and 43"
FT   CDS             37606..38016
FT                   /transl_table=11
FT                   /locus_tag="BP2009"
FT                   /product="putative cytochrome c"
FT                   /note="Similar to many cytochromes C e.g. Rhodopseudomonas
FT                   viridis cytochrome c2 precursor CycA, cycA SW:CY2_RHOVI
FT                   (P00083) (127 aa) fasta scores: E(): 1.8e-14, 45.045% id in
FT                   111 aa"
FT                   /db_xref="GOA:Q7VX17"
FT                   /db_xref="HSSP:1I6D"
FT                   /db_xref="InterPro:IPR009056"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX17"
FT                   /protein_id="CAE42289.1"
FT                   /translation="MNAGLAWRAGALCLALAAPSAARAAAPDPVRGEQVYARCLACHAL
FT                   AYDRVGPRHCGLLGRKAGSVPGFAYTQAMKDSGLTWDAATLDRFLADPLKTVPGTAMTY
FT                   AGVPDAGERADLIAYLRAAAASPACAGVATPH"
FT   misc_feature    37606..37677
FT                   /note="Signal peptide predicted for BP2009 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.840 between residues 24 and 25"
FT   misc_feature    37684..37977
FT                   /note="HMMPfam hit to PF00034, Cytochrome c"
FT   misc_feature    37720..37737
FT                   /note="ScanRegExp hit to PS00190, Cytochrome c family
FT                   heme-binding site signature."
FT   CDS             complement(38136..38693)
FT                   /transl_table=11
FT                   /gene="efp"
FT                   /locus_tag="BP2010"
FT                   /product="putative elongation factor P"
FT                   /note="Similar to many elongation factors e.g. Lactococcus
FT                   lactis elongation factor P Efp SW:EFP_LACLA (Q9CHN6) (185
FT                   aa) fasta scores: E(): 6.9e-19, 34.783% id in 184 aa and
FT                   Neisseria meningitidis putative elongation factor P Efp or
FT                   NMA1133 TR:Q9JUU2 (EMBL:AL162755) (186 aa) fasta scores:
FT                   E(): 1.9e-47, 67.568% id in 185 aa"
FT                   /db_xref="GOA:Q7VX16"
FT                   /db_xref="InterPro:IPR014722"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VX16"
FT                   /protein_id="CAE42290.1"
FT                   /translation="MKTAQELRVGNVIMVGKDPLVVQKTEYNKSGRNAAVVKLKFKNLL
FT                   TGSGSESVYKADEKFDVVVLERKECTYSYFGDPMYVFMDEEYNQYEIEADSMGDALNYL
FT                   EEAMPVEVVFYDGRAISVELPTILVREITYTEPAVRGDTSGKVLKPAKINTGFELSVPL
FT                   FCAIGDKIEIDTRTNEYRSRVN"
FT   misc_feature    complement(38142..38693)
FT                   /note="HMMPfam hit to PF01132, Elongation factor P (EF-P)"
FT   CDS             complement(38836..39948)
FT                   /transl_table=11
FT                   /locus_tag="BP2011"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein PA2852 TR:Q9HZZ1 (EMBL:AE004711) (376 aa) fasta
FT                   scores: E(): 1.6e-53, 47.013% id in 385 aa and to Neisseria
FT                   meningitidis hypothetical protein NMA1132 TR:Q9JUU3
FT                   (EMBL:AL162755) (382 aa) fasta scores: E(): 3e-37, 37.105%
FT                   id in 380 aa"
FT                   /db_xref="InterPro:IPR000834"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX15"
FT                   /protein_id="CAE42291.1"
FT                   /translation="MRADIFCRVIDNLGDIGVCWRLARRLAHGRRWQVRLWVDDLAAFA
FT                   RIQPGIVPDRDQQVCDTIEILRWDDRAEWPQTPGDVVIEAFACDPPPAYVAAMRRFQPV
FT                   WINLEYLSAEAWVETCHGLPSQRADGLVKHFFFPGFSAATGGLIREPGLSRDRDALQTS
FT                   RAQQRTLLRALGLDEAALARRDDGARLVNLFCYPDAPYQALAHALMQDARPTLLLVPQG
FT                   VAPGLPEPGQHGQLTLARVPYVSQPDFDRLLWCADLNCVRGEDSFVRAAWAARPLLWQI
FT                   YAQAENAHLEKLQAWLARYPAPAAAHALIRAWNQAPGAPAPQQALAGALAEPAWGEWNQ
FT                   AARAWDAAQAARPDLGDALADFCAELAKTS"
FT   misc_feature    complement(39220..39252)
FT                   /note="ScanRegExp hit to PS00133, Zinc carboxypeptidases,
FT                   zinc-binding region 2 signature."
FT   CDS             complement(39964..41166)
FT                   /transl_table=11
FT                   /locus_tag="BP2012"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Leishmania major hypothetical protein
FT                   LM12.86 TR:Q9N746 (EMBL:AL390114) (163 aa) fasta scores:
FT                   E(): 9.1e-20, 43.949% id in 157 aa and to Leishmania major
FT                   hypothetical protein LM12.84 TR:Q9GY60 (EMBL:AL390114) (153
FT                   aa) fasta scores: E(): 5.2e-10, 48.718% id in 78 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX14"
FT                   /protein_id="CAE42292.1"
FT                   /translation="MARTRSQSSPRLNRDASRLVALAHALDRSGSKVEDLYWEAQLAEA
FT                   ITKLLRSGHDAPLESALDNLAQTDPGAYEVLIEQSETLSESMQIEKNGTRHDVVLLVAP
FT                   VVAWTRYTIPTGPIPAPAQQALLAQLHGHILADGVRVALMPHLVSIDQMPRTFAETWQW
FT                   LHRLGTQALGAETAKPALNDDVETANMLADTRYVVAAVAVPERAPVFRWQERWDDPQAS
FT                   RDACLAQWVEQAQPTLAALLPGCGIECLLPDAYYVSNREADRRVRPLSLRAAIAWLESA
FT                   VSLEPSQMRAVVAGCGEARIDEYRIGFTARNSNDVYYGCVWPLYGREDDVPADEGQPNA
FT                   VDEIAALLKEYGVSDVRRIPGVLPPEYCEDCGAPHFPNPLGELVHAELPEDAEAVPAKF
FT                   H"
FT   RBS             41326..41331
FT                   /note="possible RBS"
FT   CDS             41336..42112
FT                   /transl_table=11
FT                   /locus_tag="BP2013"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to bacterial hypothetical proteins e.g.
FT                   Pseudomonas aeruginosa hypothetical protein PA2839
FT                   TR:Q9I004 (EMBL:AE004710) (256 aa) fasta scores: E():
FT                   2.2e-43, 49.612% id in 258 aa. Also similar to parts of
FT                   some eukaryotic proteins e.g. Arabidopsis thaliana
FT                   hypothetical protein AT4G15090 TR:O23363 (EMBL:Z97337)
FT                   (1705 aa) fasta scores: E(): 2.5e-32, 40.417% id in 240 aa
FT                   and Neurospora crassa conserved hypothetical protein
FT                   B2J23.80 TR:Q9HFJ4 (EMBL:AL442164) (379 aa) fasta scores:
FT                   E(): 7.7e-21, 37.607% id in 234 aa"
FT                   /db_xref="GOA:Q7VX13"
FT                   /db_xref="InterPro:IPR014436"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX13"
FT                   /protein_id="CAE42293.1"
FT                   /translation="MRLPTLFVSHGSPMLAVEPGRTGPALTAWSDGLPERPRAVLVVSP
FT                   HWMGQGLAVSTRDRQVAWHDFGGFPADLYQLQYPAEGSPRLAQQVVDVLAHAGIQAGND
FT                   ARRPLDHGAWVPLRYLYPHADLPVVQLSLDMERDARGQYALGQALAPLRDDGVLVIGSG
FT                   SLTHNLRDVRMPHGAPPADYVAPFQQWYAEHLAAGDVEALLDWQARAPGAARAHPHDDH
FT                   LMPLYVALGAGGMPARRLNDEVAYGALAMDAYQFGA"
FT   CDS             complement(42221..44926)
FT                   /transl_table=11
FT                   /gene="acnA"
FT                   /locus_tag="BP2014"
FT                   /product="putative aconitate hydratase"
FT                   /EC_number="4.2.1.3"
FT                   /note="Similar to many e.g. Bacillus subtilis aconitate
FT                   hydratase citB SW:ACON_BACSU (P09339) (908 aa) fasta
FT                   scores: E(): 8.5e-188, 54.596% id in 903 aa"
FT                   /db_xref="GOA:Q7VX12"
FT                   /db_xref="InterPro:IPR018136"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX12"
FT                   /protein_id="CAE42294.1"
FT                   /translation="MPHNTFDTLKTFKIGKKTCQFYSLPALGKALGVDVQRLPVSIRIV
FT                   LESVLRNCDGAKVTQEHVRQLANWQANAKREDEIPFVVARVVLQDFTGVPLLADIAAMR
FT                   SVAAKMGKDPKRIEPLVPVDLVVDHSVMIDYFGTKNALDLNMKLEFQRNRERYQFMKWG
FT                   MQAFDTFGVVPPGFGIVHQVNLEYLARGVHRDKNNDVYYPDSLVGTDSHTTMINGIGVV
FT                   GWGVGGIEAEAGMLGQPVYFLTPDVVGVELKGKLRGGVTATDLVLTITEMLRREKVVGK
FT                   FVEFCGEGTASLSVTDRATIGNMAPEYGATMGFFPVDERTIDYFEGTGRTAEEIAALEA
FT                   YFKAQKMFGVPKAKDINYTKLLTLDLGTVAPSLAGPKRPQDRIEIGNVKNTFTELFSKP
FT                   IAENGFNQPADKLHQAYTTSAGTKVKNGDILIAAITSCTNTSNPSVLLAAGLLAKKAVE
FT                   AGLKVPKHIKTSLAPGSRVVTEYLTKTGLLPYLEKLGFDVAAYGCTTCIGNAGDLTADL
FT                   NEAILGNDLVCSAVLSGNRNFEARIHPNIKANFLASPPLVVAYALAGTVTRDLMTEPVG
FT                   RGKNGDVWLGDIWPSSEEIQALLKFAMNPTAFKENYSQVKSNPGKLWENIKGVTGETYN
FT                   WPESTYIAEPPFFEGFGMTPAAMPAVKGARALGIFGDSVTTDHISPAGSIKETSPAGKW
FT                   LKENGVMKADFNSYGSRRGNHEIMMRGTFANVRIKNLMIPARPDGSRFEGGETLFQPTG
FT                   EQMSIYDAAMKYVAQGTSSVVFGGEEYGTGSSRDWAAKGTQLLGVKAVIARSFERIHRS
FT                   NLVGMGVLPLQFKGSDSAQSLGIVGNETFDVTGLEGGIKPMQDVTLTIHRADGSRQDVT
FT                   VLLRIDTPIEVDYYQHGGILPFVLRQLLAA"
FT   misc_feature    complement(42254..42793)
FT                   /note="HMMPfam hit to PF00694, Aconitase C-terminal domain"
FT   misc_feature    complement(43148..43192)
FT                   /note="ScanRegExp hit to PS00104, EPSP synthase signature
FT                   1."
FT   misc_feature    complement(43172..44692)
FT                   /note="HMMPfam hit to PF00330, Aconitase family (aconitate
FT                   hydratase)"
FT   misc_feature    complement(43340..43381)
FT                   /note="ScanRegExp hit to PS01244, Aconitase family
FT                   signature 2. Confirmed by InterPro eMOTIF pattern match."
FT   misc_feature    complement(43529..43579)
FT                   /note="ScanRegExp hit to PS00450, Aconitase family
FT                   signature 1. Confirmed by InterPro eMOTIF pattern match."
FT   RBS             complement(44932..44936)
FT                   /note="possible RBS"
FT   CDS             complement(45164..45766)
FT                   /transl_table=11
FT                   /locus_tag="BP2015"
FT                   /product="putative lipoprotein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein PA2230 TR:Q9I1N9 (EMBL:AE004649) (223 aa) fasta
FT                   scores: E(): 2e-68, 78.351% id in 194 aa and to Rhizobium
FT                   meliloti putative transmembrane protein SMC01561
FT                   TR:CAC46891 (EMBL:AL591790) (189 aa) fasta scores: E():
FT                   2e-28, 41.053% id in 190 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX11"
FT                   /protein_id="CAE42295.1"
FT                   /translation="MFGRWILLPTLLALAGCASTRPPADPENICAIFREKPSWHDAALD
FT                   VQKKWGAPVNVPIAMMHQESSFRHDALPPRYYFLGFIPWGRVSSAYGYAQAKDETWADY
FT                   KREAGGWLASRDNFSDALDFMGWYMSKTQRINGVSKWDAYGQYLNYHEGWTGYRNRSYD
FT                   RKAWLKRVAQQVQARAERFGAQYKGCERELNRGGWLF"
FT   misc_feature    complement(45707..45766)
FT                   /note="Signal peptide predicted for BP2015 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.972) with cleavage site
FT                   probability 0.485 between residues 20 and 21"
FT   misc_feature    complement(45716..45748)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             46043..48247
FT                   /transl_table=11
FT                   /gene="brfB"
FT                   /locus_tag="BP2016"
FT                   /product="putative ferric siderophore receptor"
FT                   /note="Similar to Yersinia enterocolitica ferrichrome
FT                   receptor FcuA, fcuA SW:FCUA_YEREN (Q05202) (758 aa) fasta
FT                   scores: E(): 5.1e-99, 40.909% id in 726 aa and to
FT                   Bordetella bronchiseptica putative ferric siderophore
FT                   receptor BrfB, bfrB TR:P94265 (EMBL:U77671) (734 aa) fasta
FT                   scores: E(): 0, 98.638% id in 734 aa. Show to be
FT                   iron-regulated in Bordetella bronchiseptica"
FT                   /db_xref="GOA:Q7VX10"
FT                   /db_xref="HSSP:1UJW"
FT                   /db_xref="InterPro:IPR010105"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX10"
FT                   /protein_id="CAE42296.1"
FT                   /translation="MKPLPLAYLAALLPWYAGVIQAQSAPAAGDDASITLEAVRVEASA
FT                   DASAGGLAPAFAGGQVATGAKVGILGTRDNLETPFSITAYTNELIQDRQAKGVGDVLQN
FT                   DPGVRVARGFGNFQESYFIRGFILSSDDIAYNGLYGLLPRQYISTQLFERVEVLRGASA
FT                   FLTGAPPSGGGIGGVINLVPKRAPNEPLTRFSAGYGSDSVLEASADIGRRFGPDDSVGI
FT                   RINAAQRGGETAIDGERTRTTVFALGLDWRGERARLSADIGYQDNRLKRARPNVTLAGD
FT                   AAKVPGAPDAGSNYAQPWSYSNERDVFGTLRGEYDFNGRITGWVAYGMRQSKEENSLAN
FT                   LNNVNGAGQGKFYRFDNAREDTVNTGEIGLRAKARTGPVGHELVASASYFDLEKKNAYV
FT                   MDFFNQFDTSIYDPVSYAKPAISSTAFRGNDMDDPAKQGVIRLASYALGDTMSFFDDKV
FT                   LLTAGIRHQRLYQRDYSYDTGIGGTPYEQSHNSPAAGLVVRVTPQVSLYANYIEALSAG
FT                   DTAPQTANGLPVVNHGESLAPYVSKQKEVGVKFEHDGLGGGLALFSTDKPRGFVGDDQV
FT                   FRASGKDRHRGVELTTYGELTRSVRVLGGLTWLDAKQLSTGNAATDGKRVIGVPRFQAN
FT                   LGVEWDIPGVQGLTVDGRVVYTGSSYADAANTLEVPGWTRLDAGLRYMTDIGGHLVTWR
FT                   ARVENIANRDYWSSVGGYPGNGYLVLGGPRTFTLSASMEF"
FT   misc_feature    46043..46108
FT                   /note="Signal peptide predicted for BP2016 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.994) with cleavage site
FT                   probability 0.797 between residues 22 and 23"
FT   misc_feature    47912..48244
FT                   /note="HMMPfam hit to PF00593, TonB dependent receptor
FT                   C-terminal region"
FT   misc_feature    48191..48244
FT                   /note="ScanRegExp hit to PS01156, TonB-dependent receptor
FT                   proteins signature 2."
FT   RBS             48399..48403
FT                   /note="possible RBS"
FT   CDS             48410..49144
FT                   /transl_table=11
FT                   /locus_tag="BP2017"
FT                   /product="putative haloacid-type dehydrogenase"
FT                   /note="Show weak similarity to Pseudomonas sp.
FT                   2-haloalkanoic acid dehalogenase I SW:HAD1_PSESP (P24069)
FT                   (227 aa) fasta scores: E(): 2.4e-09, 28.821% id in 229 aa.
FT                   Also similar to many haloacid-type hydrolases e.g.
FT                   Pseudomonas aeruginosa probable haloacid dehalogenase
FT                   PA0810 TR:Q9I5C9 (EMBL:AE004516) (233 aa) fasta scores:
FT                   E(): 1.7e-35, 42.797% id in 236 aa"
FT                   /db_xref="GOA:Q7VX09"
FT                   /db_xref="InterPro:IPR005833"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX09"
FT                   /protein_id="CAE42297.1"
FT                   /translation="MEPVRGMDIEVLFFDVLGTVVDWRGSIADEVAAFLKRHELPHVDA
FT                   HQFADAWVGQYDAAIEPIRAGQRAFAPLDIINMENLQACLAQFDLAPARFARSELETLN
FT                   HAWHKLRPWPDSVAGIAQLKQRFIVAPLSDGHTRLLVDMAKHAGLPWDMVFGADASRSY
FT                   KPAPQAYLHACALLDVPPQRAMLVAAHGYDLDAARSCGLKTAYVQRQRAADPSKAGYRG
FT                   APENWDYQAGSLTELAQLLAKA"
FT   misc_feature    48434..49039
FT                   /note="HMMPfam hit to PF00702, haloacid dehalogenase-like
FT                   hydrolase"
FT   CDS             complement(49221..50171)
FT                   /transl_table=11
FT                   /locus_tag="BP2018"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTA4"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTA4"
FT                   /protein_id="CAE42298.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS"
FT   repeat_region   49221..49252
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   complement(49221..50273)
FT   misc_feature    complement(49257..49790)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   misc_feature    complement(49848..49913)
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   repeat_region   complement(50242..50273)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(50253..50801)
FT                   /transl_table=11
FT                   /locus_tag="BP2019"
FT                   /product="putative lipoprotein"
FT                   /note="Similar in part to Rhizobium meliloti hypothetical
FT                   transmembrane protein SMC00354 TR:CAC41711 (EMBL:AL591783)
FT                   (221 aa) fasta scores: E(): 2.1e-09, 33.908% id in 174 aa
FT                   and to other putative outer membrane proteins. Also similar
FT                   to part of Escherichia coli outer membrane protein A OmpA,
FT                   ompA SW:OMPA_ECOLI (P02934) (346 aa) fasta scores: E():
FT                   2.4e-07, 40.860% id in 93 aa. May be truncated by the
FT                   downstream insertion element"
FT                   /db_xref="GOA:Q7VX08"
FT                   /db_xref="HSSP:1OAP"
FT                   /db_xref="InterPro:IPR006665"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX08"
FT                   /protein_id="CAE42299.1"
FT                   /translation="MATHPVGPTLLAALTLLAACSGSMAQEPPYKSTILGLQATILDLK
FT                   GLPSDTDGGISDLSAQVGALAARHEGVSVRQGKDAVTIAMMGDVLFDFDKADILAAAEP
FT                   TLRDIAELIKSPATGIVAIEGHTDSKGSDSYNKGLSLRRAQAVAQWLGAHGVDAAKLSV
FT                   RGLGAARPVQPNQLAVKIQ"
FT   misc_feature    complement(50268..50534)
FT                   /note="HMMPfam hit to PF00691, OmpA family"
FT   misc_feature    complement(50727..50801)
FT                   /note="Signal peptide predicted for BP2019 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 1.000 between residues 25 and 26"
FT   misc_feature    complement(50742..50774)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(50804..51142)
FT                   /transl_table=11
FT                   /locus_tag="BP2020"
FT                   /product="hypothetical protein"
FT                   /note="no significant database hits"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX07"
FT                   /protein_id="CAE42300.1"
FT                   /translation="MIDAVRSGEILSIKIRFKPVVMGKTETIYSQISKSDYENSFYVIA
FT                   GNKKHLLLKDSNDVPLTNPKVLIRTSSDAPIAGSWQGKFPAPPKEIKEVSLTIPGVETF
FT                   DVIQITDR"
FT   CDS             complement(51537..54128)
FT                   /transl_table=11
FT                   /gene="acnB"
FT                   /locus_tag="BP2021"
FT                   /product="putative aconitate hydratase"
FT                   /EC_number="4.2.1.3"
FT                   /note="Similar to many e.g. Escherichia coli aconitate
FT                   hydratase 2 acnB or B0118 SW:ACO2_ECOLI (P36683) (865 aa)
FT                   fasta scores: E(): 0, 72.885% id in 863 aa"
FT                   /db_xref="GOA:Q7VX06"
FT                   /db_xref="InterPro:IPR018136"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX06"
FT                   /protein_id="CAE42301.1"
FT                   /translation="MLETYHQHVADRAALGIPPLPLSAQQTADLIELLKNPPDGEAQNL
FT                   LELLTYRVPAGVDDAAKVKASYLAAVAFGTESCALIDRAKATELLGTMLGGYNIGPLVQ
FT                   LLDDAEVGTIAADALKKTLLMFDAFHDVKEKADKGNANAKSVLQSWADAEWFTSRPEVP
FT                   QSLTVTVFKVPGETNTDDLSPAPDATTRPDIPMHALAMLKNKRDGAAFEPEEDGKRGPV
FT                   QFIESLKEKGHLVAYVGDVVGTGSSRKSATNSVLWFTGEDIPFVPNKRFGGVCLGSKIA
FT                   PIFYNTMEDAGALPIELDVSKMEMGDVVELRPYDGKAIKNGETIAEFTVKSDVLFDEVR
FT                   AGGRIPLIIGRGLTAKAREALGLPPSTLFRLPNNPADTGKGYTLAQKMVGRACGLPEGQ
FT                   GIRPGTYCEPKMTSVGSQDTTGPMTRDELKDLACLDFSADLVMQSFCHTAAYPKPVDVK
FT                   THHTLPQFISTRGGISLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGL
FT                   VAFAAATGVMPLDMPESVLVRFKGKMQPGVTLRDLVNAIPLYAIKQGLLTVAKQGKKNI
FT                   FSGRILEIEGLPDLKVEQAFELSDASAERSAAGCSVRLHKEPIIEYINSNIVMLKWMIA
FT                   NGYEDERSLGRRIKAMEAWLADPKLLEPDADADYAAVIEIDLADIHEPIVACPNDPDDV
FT                   KTLSDVAGAKIDEVFIGSCMTNIGHFRAASKLLEGKRDIPVKLWVAPPTKMDAQQLTEE
FT                   GHYGVFGTAGARTEMPGCSLCMGNQAQVREGATVMSTSTRNFPNRLGKNTNVYLGSAEL
FT                   AAICSRLGRIPTREEYMADMGVINKSGDQIYQYLNFDRIPDYKDVADVIEV"
FT   misc_feature    complement(51669..52019)
FT                   /note="HMMPfam hit to PF00330, Aconitase family (aconitate
FT                   hydratase)"
FT   misc_feature    complement(51963..52016)
FT                   /note="ScanRegExp hit to PS00450, Aconitase family
FT                   signature 1. Confirmed by InterPro eMOTIF pattern match."
FT   misc_feature    complement(52026..52154)
FT                   /note="HMMPfam hit to PF00330, Aconitase family (aconitate
FT                   hydratase)"
FT   CDS             54264..54938
FT                   /transl_table=11
FT                   /locus_tag="BP2022"
FT                   /product="putative exonuclease"
FT                   /note="Similar to the N-terminal half of Bacillus subtilis
FT                   DNA polymerase III PolC-type polC or dnaF or mutI
FT                   SW:DPO3_BACSU (P13267) (1437 aa) fasta scores: E():
FT                   3.7e-07, 33.918% id in 171 aa and to many other putative
FT                   exonucleases e.g. Deinococcus radiodurans putative DNA
FT                   polymerase III, epsilon subunit DR0856 TR:Q9RW13
FT                   (EMBL:AE001939) (197 aa) fasta scores: E(): 4.2e-14,
FT                   37.949% id in 195 aa"
FT                   /db_xref="GOA:Q7VX05"
FT                   /db_xref="InterPro:IPR013520"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX05"
FT                   /protein_id="CAE42302.1"
FT                   /translation="MPVGPAGRCFYCCFGINMAYFRRYTTPHPYGQTLRAGAAAGRASA
FT                   ARDGLRALDGPFVVADLETTGLSVATCEILEFAAVRVSACGQIEREFTQVVRTDGRVLP
FT                   FISRLTGITQAEVERDGVPVRQAFGDFLDFIEGGPLFFHNASFDRRFLQAAADRTGLPF
FT                   EAQTHCTLMLARQAWPELPSHKLNVLARHLGASEPTHRALADVRTTVAVALAARARLAA
FT                   QG"
FT   misc_feature    54432..54926
FT                   /note="HMMPfam hit to PF00929, Exonuclease"
FT   CDS             54951..55337
FT                   /transl_table=11
FT                   /locus_tag="BP2023"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Mus musculus RS21-C6 TDRG-Tl1 TR:Q9QY93
FT                   (EMBL:AF110764) (170 aa) fasta scores: E(): 1.6e-15,
FT                   51.456% id in 103 aa and to other bacterial hypothetical
FT                   proteins e.g. Pseudomonas aeruginosa hypothetical protein
FT                   PA4789 TR:Q9HV19 (EMBL:AE004892) (101 aa) fasta scores:
FT                   E(): 1.9e-09, 45.055% id in 91 aa"
FT                   /db_xref="InterPro:IPR011394"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX04"
FT                   /protein_id="CAE42303.1"
FT                   /translation="MAASDTPGASAGEFDAIRDAVRGFAAERQWEPFHSPKNLAMALAG
FT                   EAGELVAVFQWLTEAGSRELTPSQRQAAADEIADVQLYLVALADQLGLDIPAAVAAKMR
FT                   KNALKYPAERFRGSARKYNDESGR"
FT   CDS             complement(55344..55634)
FT                   /transl_table=11
FT                   /locus_tag="BP2024"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to bacterial hypothetical proteins e.g.
FT                   Bacillus subtilis hypothetical protein YczJ yczJ
FT                   SW:YCZJ_BACSU (O31484) (95 aa) fasta scores: E(): 2.5e-09,
FT                   33.684% id in 95 aa and Deinococcus radiodurans conserved
FT                   hypothetical protein DR1636 TR:Q9RTW6 (EMBL:AE002007) (122
FT                   aa) fasta scores: E(): 1e-08, 38.889% id in 90 aa"
FT                   /db_xref="GOA:Q7VX03"
FT                   /db_xref="InterPro:IPR007138"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX03"
FT                   /protein_id="CAE42304.1"
FT                   /translation="MIQEIASILVQPGREADFEAGVAQARPLFMRARGCHGVALHRSIE
FT                   APQRYTLVVDWETVDNHMVDFRQSADFQEWRKLVGECFAEPPQVHHEQKVL"
FT   CDS             55770..56069
FT                   /transl_table=11
FT                   /locus_tag="BP2025"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to bacterial hypothetical proteins e.g.
FT                   Rhizobium loti hypothetical protein MSR4226 TR:Q98EI5
FT                   (EMBL:AP003003) (98 aa) fasta scores: E(): 0.0081, 29.897%
FT                   id in 97 aa"
FT                   /db_xref="HSSP:1MWQ"
FT                   /db_xref="InterPro:IPR005545"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX02"
FT                   /protein_id="CAE42305.1"
FT                   /translation="MHYLLFYDVIPDYPARRAQYRAEHLALARAAAQRGELVLAGALAD
FT                   LIDGAVLLFTGDTPAAAEAFAAADPYVREGLVTHWRVRPWTTVVGEQASQPVPD"
FT   CDS             56138..57040
FT                   /transl_table=11
FT                   /locus_tag="BP2026"
FT                   /product="putative integral membrane protein"
FT                   /note="Similar to bacterial putative integral membrane
FT                   proteins e.g. Caulobacter crescentus integral membrane
FT                   protein CC3090 TR:Q9A3W1 (EMBL:AE005972) (300 aa) fasta
FT                   scores: E(): 1.3e-58, 57.388% id in 291 aa and Pseudomonas
FT                   aeruginosa hypothetical protein PA4779 TR:Q9HV29
FT                   (EMBL:AE004891) (297 aa) fasta scores: E(): 1.6e-36,
FT                   45.890% id in 292 aa"
FT                   /db_xref="GOA:Q7VX01"
FT                   /db_xref="InterPro:IPR000620"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX01"
FT                   /protein_id="CAE42306.1"
FT                   /translation="MPLSHLLLALSVVFIWGTNFVVIKWALADFPPFLFAALRFLLSVL
FT                   PWVLLFRRPAVPWSRLAAFGVLLGVGQFGVLYWAMQRDITPGMASLLVQSQVFFTILMS
FT                   MAFTGERMRLWQALALVLAVAGYAVVAWYSVADPGAAITLLGVGLVLLAGLSWACANMV
FT                   ARTAGRVNMVGFIAWSSLFAVPPIVLISLLAEGPAAIAQAVTHASPAAWAAVLWQAVGN
FT                   TVFGFGAWNWLLARHPATTVAPMALLVPVFGMLASTLLLDESLPGWKLSAAALVLGGLA
FT                   LNLYAGRLDAAARMARAGR"
FT   misc_feature    join(56150..56218,56231..56290,56309..56377,56390..56458,
FT                   56477..56545,56558..56626,56645..56713,56771..56839,
FT                   56858..56917,56945..56998)
FT                   /note="10 probable transmembrane helices predicted for
FT                   BP2026 by TMHMM2.0 at aa 5-27, 32-51, 58-80, 85-107,
FT                   114-136, 141-163, 170-192, 212-234, 241-260 and 270-287"
FT   misc_feature    56177..56533
FT                   /note="HMMPfam hit to PF00892, Integral membrane protein
FT                   DUF6"
FT   misc_feature    56600..56992
FT                   /note="HMMPfam hit to PF00892, Integral membrane protein
FT                   DUF6"
FT   CDS             57044..57814
FT                   /transl_table=11
FT                   /locus_tag="BP2027"
FT                   /product="putative integral membrane protein"
FT                   /note="Shows weak similarity to many bacterial putative
FT                   integral membrane proteins e.g. Escherichia coli O157:H7
FT                   hypothetical membrane protein ECS4801 TR:BAB38224
FT                   (EMBL:AP002567) (291 aa) fasta scores: E(): 4.4e-09,
FT                   28.235% id in 255 aa"
FT                   /db_xref="GOA:Q7VX00"
FT                   /db_xref="InterPro:IPR002781"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VX00"
FT                   /protein_id="CAE42307.1"
FT                   /translation="MSILQHVLFLACVALATYAQTMTGFAFGLVLLGLTGLLAVAPLPD
FT                   MANTVSILTLVNALVVIDRARPQVDWTLVRPALVSSLAGVALGVFMLDWISGSAAVLLQ
FT                   WLLGLTILACAIQLVARARPLARVSSRRSFVGFGVVSGVLGGLFSSAGPPMVYHLYRQP
FT                   LPLATIRNSLLILFSCNAMTRLALVGAQDSLHTITFWLSLKAFPVVVALTWLVRRYASA
FT                   RSIHTVKRLVFVLLVAAGLGLLVPASGALWTMWH"
FT   misc_feature    57044..57100
FT                   /note="Signal peptide predicted for BP2027 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.998) with cleavage site
FT                   probability 0.507 between residues 19 and 20"
FT   misc_feature    57047..57079
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    join(57062..57130,57158..57226,57260..57328,57341..57409,
FT                   57443..57511,57629..57697,57734..57802)
FT                   /note="7 probable transmembrane helices predicted for
FT                   BP2027 by TMHMM2.0 at aa 7-29, 39-61, 73-95, 100-122,
FT                   134-156, 196-218 and 231-253"
FT   CDS             58200..58649
FT                   /transl_table=11
FT                   /locus_tag="BP2028"
FT                   /product="putative exported protein"
FT                   /note="Unknown function"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWZ9"
FT                   /protein_id="CAE42308.1"
FT                   /translation="MKKIATLAALAASAALVGPALAGGSHSSSGVGAYGGSVKGSVESI
FT                   SNGSAAAASQVMGTGFSKQFASGETSGYASMGGAIHRDGVEVWTDTSQYSKTNGFGMTG
FT                   GNAPAQIGDVIVNGAGAFAESNTEAIAKGKFQMFQIGRIGGYGHR"
FT   misc_feature    58200..58265
FT                   /note="Signal peptide predicted for BP2028 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.929 between residues 22 and 23"
FT   CDS             complement(58717..59667)
FT                   /transl_table=11
FT                   /locus_tag="BP2029"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTC0"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTC0"
FT                   /protein_id="CAE42309.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN"
FT   repeat_region   58717..58748
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   complement(58717..59769)
FT   misc_feature    complement(58753..59286)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   misc_feature    complement(59344..59409)
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   repeat_region   complement(59738..59769)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(59765..59884)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2029A"
FT                   /product="putative membrane protein (pseudogene)"
FT                   /note="Pseudogene. This CDS is disrupted by the insertion
FT                   of IS481. No significant database matches"
FT   CDS             complement(60029..60940)
FT                   /transl_table=11
FT                   /locus_tag="BP2030"
FT                   /product="putative LysR-family transcriptional activator"
FT                   /note="Similar to e.g. Escherichia coli cyn operon
FT                   transcriptional activator CynR, cynR SW:CYNR_ECOLI (P27111)
FT                   (311 aa) fasta scores: E(): 5.7e-19, 29.085% id in 306 aa
FT                   and to Vibrio cholerae transcriptional regulator, lysR
FT                   family VC2103 TR:Q9KQ97 (EMBL:AE004284) (292 aa) fasta
FT                   scores: E(): 1.7e-38, 39.161% id in 286 aa"
FT                   /db_xref="GOA:Q7VWZ8"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWZ8"
FT                   /protein_id="CAE42311.1"
FT                   /translation="MDVRALRYFVETVRTASFTQAARALFVTQSTVSKMIRQLEDEVGT
FT                   PLLIRDGHTARPTDTGRIVYERGLHILGAMRQLDAEVREAVDLQRGELEVGIPPMINLL
FT                   FTPVVKRFRERHPHIRLSLREDTGQAVERLVAAGELEVGATVLPIQDPGPLQATRFGSY
FT                   ALWVIGPPAAAWAGKTALPLTALRDLPLLLPTDDFALTRRLRQACAQAGFAPRIAAQSA
FT                   HWDFLAAMASADLGVALLPEPLVQRLKTRGLSTARLAKAGLQWEIGHIRVRDRYLSHAA
FT                   RAWLEVATEVLGNGQPARKPSR"
FT   misc_feature    complement(60404..60427)
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   misc_feature    complement(60509..60934)
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family"
FT   misc_feature    complement(60800..60892)
FT                   /note="ScanRegExp hit to PS00044, Bacterial regulatory
FT                   proteins, lysR family signature."
FT   misc_feature    complement(60830..60895)
FT                   /note="Predicted helix-turn-helix motif with score 1978
FT                   (+5.92 SD) at aa 16-37, sequence ASFTQAARALFVTQSTVSKMIR"
FT   CDS             61151..62683
FT                   /transl_table=11
FT                   /locus_tag="BP2031"
FT                   /product="putative acyl-CoA transferase"
FT                   /note="Similar to many e.g. Pseudomonas aeruginosa coenzyme
FT                   A transferase PsecoA, psecoA TR:O84911 (EMBL:AF010184) (497
FT                   aa) fasta scores: E(): 1.9e-121, 66.397% id in 494 aa"
FT                   /db_xref="GOA:Q7VWZ7"
FT                   /db_xref="InterPro:IPR003702"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWZ7"
FT                   /protein_id="CAE42312.1"
FT                   /translation="MSGDSMHLERIRHPGLRARLASPQEAARLVHDGMTVGMSEFTRAG
FT                   DCKSVPAALAERAAAEPLRITLLTGASLGHDTDKLLAQAGVLARRMPFQVDTTLRRKIN
FT                   QGEIAFVDQHLSETVEQLRAGHIGPIDIAIVEAAAITEDGGIVPTMSVGNSASFVEQAR
FT                   LVIVELNLGVPAAIEGLHDIVIPGARPGRQPLPLVSVDQRIGAPCIAVDPDKIAAIVVT
FT                   NEPDSPSNALPPDEEIGAIAGHIVGFLRQEVNQGRLSRSLLPLQAGIGTIANAVLHGFG
FT                   ESEFEGLTMYSEVLQDSAIELLDQGKLSFASASSITVSLPVYERILGNLEHYRQRIVLR
FT                   PQEISNAPELVRRLGVIAINTALEFDIYGNVNSTHVGGTHMMNGIGGSGDFVRNAHLSI
FT                   FVTKSMARNGDISSVVPMVSHVDHNEHDVDILVTECGLADLRGLAPRERARAIIAHCVH
FT                   PSYRDALRDYFERACRRGGQTSHLLEEAFSWHQRYNETDTMRLAAPAARRVA"
FT   misc_feature    61184..62647
FT                   /note="HMMPfam hit to PF02550, Acetyl-CoA
FT                   hydrolase/transferase"
FT   CDS             complement(join(62733..63377,63380..63709))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2032"
FT                   /product="putative transmembrane transport protein
FT                   (pseudogene)"
FT                   /note="Pseudogene. This CDS appears to have a frameshift
FT                   mutation following codon 110. The frameshift occurs within
FT                   a plymeric tract of G5. The sequence has been checked and
FT                   believed to be correct. Similar to many putative transport
FT                   proteins e.g. Pseudomonas aeruginosa probable transporter
FT                   PA3264 TR:Q9HYX6 (EMBL:AE004749) (311 aa) fasta scores:
FT                   E(): 1.1e-71, 66.667% id in 309 aa. Contains a frameshift
FT                   near codon 117"
FT                   /db_xref="PSEUDO:CAE42313.1"
FT   misc_feature    complement(join(62976..63041,63072..63137,63159..63224,
FT                   63255..63320))
FT                   /note="4 probable transmembrane helices predicted for
FT                   BP2032 by TMHMM2.0 at aa 13-35, 45-67, 74-96 and 106-128"
FT   variation       complement(63379..63383)
FT                   /note="(G)5 in pertussis; (G)3 in parapertussis and
FT                   bronchiseptica"
FT   misc_feature    complement(join(63434..63499,63539..63592,63623..63688))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BP2033 by TMHMM2.0 at aa 35-57, 67-85 and 98-120"
FT   CDS             complement(63915..64877)
FT                   /transl_table=11
FT                   /locus_tag="BP2034"
FT                   /product="putative LysR-family transcriptional regulator"
FT                   /note="Similar to many e.g. Citrobacter diversus
FT                   transcriptional activator protein AmpR ampR SW:AMPR_CITDI
FT                   (P52658) (285 aa) fasta scores: E(): 1.3e-21, 33.904% id in
FT                   292 aa"
FT                   /db_xref="GOA:Q7VWZ6"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWZ6"
FT                   /protein_id="CAE42314.1"
FT                   /translation="MLTSTSRLPLNVLPVFRVVADLQNLRAAALQLHLTHSAVSQQIRT
FT                   LETQLGFALFDRRARRLVLNPAGQALLRATEPALALLDEGVQAAAAAAAGSGLRLRISV
FT                   LPSLAQLWLLPRMARWHAHHPDIALEIETSQQVVDLHREGFHAALRFGRGPWAGQQSEP
FT                   LFDTPTRMILVAAPATARRLAGADPQRLAHEPLLGEQGLWQAWFQAAGVRATIKPVALF
FT                   NDAGMLAQAAEQNLGLALVRELLAADALTAGRLVRLSPLAIAAEQRQTFHLVYRPELSD
FT                   WPPLQALRQWLHDELALARATLAHEAGTPPRRRRARPAT"
FT   misc_feature    complement(64431..64850)
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family"
FT   misc_feature    complement(64716..64808)
FT                   /note="ScanRegExp hit to PS00044, Bacterial regulatory
FT                   proteins, lysR family signature."
FT   misc_feature    complement(64746..64811)
FT                   /note="Predicted helix-turn-helix motif with score 1723
FT                   (+5.06 SD) at aa 23-44, sequence QNLRAAALQLHLTHSAVSQQIR"
FT   RBS             64956..64959
FT                   /note="possible RBS"
FT   rRNA            66117..67648
FT                   /note="16S rRNA"
FT   tRNA            67746..67822
FT                   /note="tRNA Ile anticodon GAT, Cove score 93.29"
FT   tRNA            67843..67918
FT                   /note="tRNA Ala anticodon TGC, Cove score 88.49"
FT   rRNA            68233..71114
FT                   /note="23S rRNA"
FT   rRNA            71289..71403
FT                   /note="5S rRNA"
FT   CDS             complement(71772..>72173)
FT                   /transl_table=11
FT                   /locus_tag="BP2036"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to many bacterial hypothetical proteins e.g.
FT                   Escherichia coli hypothetical protein YchJ, ychJ
FT                   SW:YCHJ_ECOLI (P37052) (152 aa) fasta scores: E(): 1.5e-11,
FT                   44.681% id in 94 aa. This CDS prediction starts at the
FT                   first potential initiation codon. Most homologous CDS are
FT                   predicted to start upstream of this position, therefore
FT                   this CDS may be an N-terminally truncated pseudogene"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VWZ5"
FT                   /protein_id="CAE42315.1"
FT                   /translation="VKKNPSSPAGCPCGKPRAYPDCCGRWHAGALFLQAPDAESLMRSR
FT                   YSAFVLDQLDYLLQTWHPDTRPSELEPNAADVKWLGLQIKASQQQDDTHATVEFVARLR
FT                   QAGRATRLHELSRFVKEEQRWYYVDGDIR"
FT   CDS             complement(72280..72552)
FT                   /transl_table=11
FT                   /locus_tag="BP2037"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to many e.g. Rhizobium meliloti conserved
FT                   hypothetical protein SMC00656 TR:CAC47295 (EMBL:AL591791)
FT                   (93 aa) fasta scores: E(): 2.9e-08, 34.831% id in 89 aa,
FT                   Pseudomonas aeruginosa hypothetical protein PA1749
FT                   TR:Q9I2Y8 (EMBL:AE004601) (161 aa) fasta scores: E():
FT                   2.7e-07, 43.529% id in 85 aa and Streptomyces coelicolor
FT                   conserved hypothetical protein SC8D11.19 TR:Q9AK00
FT                   (EMBL:AL512944) (102 aa) fasta scores: E(): 2e-06, 38.750%
FT                   id in 80 aa"
FT                   /db_xref="InterPro:IPR016181"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWZ4"
FT                   /protein_id="CAE42316.1"
FT                   /translation="MSDIAHRETQSRFETTVDGQRCELDYVLRDHIMTIVHTGVPAPVG
FT                   GRGIAAELTRAALDTARQRGWKVVPQCSYAAVYLKRHPEYQDLQA"
FT   CDS             complement(72549..73496)
FT                   /transl_table=11
FT                   /locus_tag="BP2038"
FT                   /product="putative hydroxlacyl-CoA dehydrogenase"
FT                   /note="Similar to Streptomyces coelicolor probable
FT                   hydroxyacyl-CoA dehydrogenase SCBAC20F6.15 TR:Q53926
FT                   (EMBL:X62373) (307 aa) fasta scores: E(): 1.3e-37, 41.613%
FT                   id in 310 aa and to many other putative hydroxyacyl-CoA
FT                   dehydrogenases e.g. Pseudomonas aeruginosa probable
FT                   3-hydroxyacyl-CoA dehydrogenase PA5386 TR:Q9HTH8
FT                   (EMBL:AE004951) (321 aa) fasta scores: E(): 9e-48, 47.097%
FT                   id in 310 aa"
FT                   /db_xref="GOA:Q7VWZ3"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWZ3"
FT                   /protein_id="CAE42317.1"
FT                   /translation="MNPPEHVVSPPIARVAVVGAGTIGASWAALFAARGLRVTVTDPAP
FT                   GAAESLRGRIADIWPALAAAGAIQDGADPDAVRFDADLQEALRDADFVQENAPERPDFK
FT                   ADLFTRMDAALPPHTIIASSSSGLPMSALQAGCRHPERCVIGHPFNPPHLIPLVEVVAG
FT                   RQTAPAAIERAMAFYRSLGKYPIRIDKEIPGHVANRLQAALWREAIHLVADIDAAVTQG
FT                   PGLRWALYGPHMTFHLGGGEGGLAHFLDHLRGPVQTWWDDLGQPELTPALQRKLIQGVA
FT                   AEAGQRSIAELSATRDAQLTAILAILRQQGSPHP"
FT   misc_feature    complement(72627..73454)
FT                   /note="HMMPfam hit to PF00725, 3-hydroxyacyl-CoA
FT                   dehydrogenase, C-terminal domain"
FT   RBS             complement(73503..73506)
FT                   /note="possible RBS"
FT   RBS             73665..73670
FT                   /note="possible RBS"
FT   CDS             73678..75072
FT                   /transl_table=11
FT                   /locus_tag="BP2039"
FT                   /product="putative amidase"
FT                   /note="Similar to e.g. Bradyrhizobium japonicum
FT                   indoleacetamide hydrolase, bam SW:HYIN_BRAJA (P19922) (465
FT                   aa) fasta scores: E(): 8.3e-46, 40.849% id in 377 aa and
FT                   many other putative amidases"
FT                   /db_xref="GOA:Q7VWZ2"
FT                   /db_xref="InterPro:IPR000120"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWZ2"
FT                   /protein_id="CAE42318.1"
FT                   /translation="MSQLWRMSASDLAQAIRAREVSARAAAEAALRRLDEVNPRLNAVV
FT                   DWRPDEVLAQADEIDAALARGDDPGPLAGVPVTVKINIDQAGFATSNGVALQKDVIAQA
FT                   NSPVVDNLRRAGAVILGRTNAPAFSLRWFTSNLLHGRTLNPRNAALTPGGSSGGAASAV
FT                   AAGIGQLAHGTDIAGSIRYPAYACGVHGLRPSLGRVAAYNAALPERSLGGQITAVSGPL
FT                   ARTVADLRLGLAAMAARDARDPWWMPVPLEGPPAPRRAALCVSPDGLETQPAVCAALYE
FT                   AAARLRDAGWQVEETGAIPPLQEAADLQIRMWLADGYEALLRAAQQEGDPGALVALCGQ
FT                   QEAARALDLPGYTATLTRRATLTRLWQLFFEDYPVLLLPVSAEPPFADDLDLQGADAYR
FT                   RVWRAQLTQVGLPFMGLPGLALAMPGVGAAPLGVQVVAARFREDLCLAAGADIEARGAP
FT                   VTLAGP"
FT   misc_feature    73750..74835
FT                   /note="HMMPfam hit to PF01425, Amidase"
FT   misc_feature    74134..74229
FT                   /note="ScanRegExp hit to PS00571, Amidases signature.
FT                   Confirmed by InterPro eMOTIF pattern match."
FT   CDS             complement(75095..75490)
FT                   /transl_table=11
FT                   /locus_tag="BP2040"
FT                   /product="putative membrane protein"
FT                   /note="Unknown function"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWZ1"
FT                   /protein_id="CAE42319.1"
FT                   /translation="MMQAGMYSQTVTFLFSLFVLCFITCTISGLVLFLFKARRANEELR
FT                   HPLLQHRPFKQYPFAIQASIMLDYFLRLAFPRTKWWLIGHANKQLAHVDPKRVPLDVKW
FT                   PIIGFWGACWLGLLAMISLWAMLLLGM"
FT   misc_feature    complement(join(75107..75172,75386..75451))
FT                   /note="2 probable transmembrane helices predicted for
FT                   BP2040 by TMHMM2.0 at aa 13-35 and 106-128"
FT   CDS             complement(75487..76746)
FT                   /transl_table=11
FT                   /gene="proA"
FT                   /locus_tag="BP2041"
FT                   /product="putative gamma-glutamyl phosphate reductase"
FT                   /EC_number="1.2.1.41"
FT                   /note="Similar to many e.g. Meiothermus ruber
FT                   gamma-glutamyl phosphate reductase ProA, proA SW:PROA_MEIRU
FT                   (O86053) (417 aa) fasta scores: E(): 2.8e-73, 50.608% id in
FT                   411 aa, and to Pseudomonas aeruginosa gamma-glutamyl
FT                   phosphate reductase ProA, proA or PA4007 SW:PROA_PSEAE
FT                   (Q9HX20) (421 aa) fasta scores: E(): 1.2e-94, 64.115% id in
FT                   418 aa"
FT                   /db_xref="GOA:Q7VWZ0"
FT                   /db_xref="InterPro:IPR012134"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VWZ0"
FT                   /protein_id="CAE42320.1"
FT                   /translation="MSSIETYMQSVGEQARTASRAMMRATGAAKNQALLAMAEAILAQR
FT                   AELQAANAKDVAAARANGLEAALLDRLTLSDRSIELMAEGLRQIAALPDPGGSITATSV
FT                   RPNGMRVAQMRVPLGVIGIIYESRPNVTIDAAALCLKSGNATILRGGSEALHSNVALGR
FT                   IVQAGLQAAGLPTAAVQVIDTTDRAAVGKLVTMTEHVDVIVPRGGKGLISRLAQEARVP
FT                   LIKHLDGNCHVYVDAAADLAKAHDIAFNAKTYRYGVCGAMETLLVHADVAQRLLPALGQ
FT                   ALREHGVELRGCARALQWLPEGKPADDADWATEYLGPILAVRVVDTIDEAMDHISRWGS
FT                   GHTDAIVTENLSAAQRFQREVDSSSVYVNLPTCFADGFEYGLGAEIGISTNRLHARGPV
FT                   GLEGLTTLKWVLNGEGQVRA"
FT   misc_feature    complement(75505..76746)
FT                   /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase
FT                   family"
FT   CDS             complement(76868..77923)
FT                   /transl_table=11
FT                   /gene="holA"
FT                   /locus_tag="BP2042"
FT                   /product="putative DNA polymerase III, delta subunit"
FT                   /EC_number="2.7.7.7"
FT                   /note="Similar to many e.g. Escherichia coli DNA polymerase
FT                   III, delta subunit HolA, holA or b0640 SW:HOLA_ECOLI
FT                   (P28630) (343 aa) fasta scores: E(): 3.1e-22, 31.677% id in
FT                   322 aa and to Neisseria meningitidis putative DNA
FT                   polymerase III, delta subunit HolA, holA or NMA0913
FT                   TR:Q9JVB2 (EMBL:AL162754) (332 aa) fasta scores: E():
FT                   5.7e-41, 42.478% id in 339 aa"
FT                   /db_xref="GOA:Q7VWY9"
FT                   /db_xref="HSSP:1JQJ"
FT                   /db_xref="InterPro:IPR005790"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWY9"
FT                   /protein_id="CAE42321.1"
FT                   /translation="MAAPLDSDALASHLARAGGRLAPLYTVSGDEPLLVTEAADAIRAA
FT                   ARAAGYTDRTSMVMDARSDWSAVAAATQSVSLFGDRRLLELKIPTGKPGKSGGEMLARL
FT                   ADQARDQADADTLVVVALPRLDKATRESKWAQALARGGVMADIANVERGRLPAWIGMRL
FT                   GRQNQRADTATLQWMADKVEGNLLAAHQEIQKLGLLYPEGQLAAEDVERAVLNVARYDV
FT                   FGLRDAMLAGDTARTVRMLDGLRAEGEALPLVLWAVGEEIRLLARVAQARQQGQDAGAL
FT                   MRRLRIFGAHERLALQALGRVAPGAWPAAVQHAHEVDRLIKGLSVPGRLADPWEEMTRL
FT                   ALRVAAAGARP"
FT   CDS             complement(77926..78585)
FT                   /transl_table=11
FT                   /locus_tag="BP2043"
FT                   /product="putative lipoprotein"
FT                   /note="Unknown function"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWY8"
FT                   /protein_id="CAE42322.1"
FT                   /translation="MNFAGHFLHFPRLTWPRGIALAMLMLLAGCGFTMRGVTPLPFDTL
FT                   YVGIPDNTRFGADVRRALRAASPNTRQVPTSKDAQAILQQVNTDRTLREVSLNAQGRVE
FT                   EYELGIDYTFRLIDAKGNALVPDTTMSIYREMPYDDQVVQAKQGQIDALYQSMEKELVN
FT                   RLLRRLTAPDVHEAAARAAAGTLDPDAPVYDPNQATPASQPSPWNTPNAYPGMDTP"
FT   misc_feature    complement(78481..78585)
FT                   /note="Signal peptide predicted for BP2043 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.804) with cleavage site
FT                   probability 0.756 between residues 35 and 36"
FT   misc_feature    complement(78496..78528)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(78601..81258)
FT                   /transl_table=11
FT                   /gene="leuS"
FT                   /locus_tag="BP2044"
FT                   /product="leucyl-tRNA synthetase"
FT                   /EC_number="6.1.1.4"
FT                   /note="Similar to many e.g. Pseudomonas aeruginosa
FT                   leucyl-tRNA synthetase LeuS, leuS or PA3987 SW:SYL_PSEAE
FT                   (Q9HX33) (873 aa) fasta scores: E(): 0, 59.775% id in 890
FT                   aa"
FT                   /db_xref="GOA:Q7VWY7"
FT                   /db_xref="InterPro:IPR013155"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VWY7"
FT                   /protein_id="CAE42323.1"
FT                   /translation="MQERYQPNSVEAAAQQTWQARDAYLVHEHAKNPDGSEKPKFYACS
FT                   MLPYPSGKLHMGHVRNYTINDMMARQLRMRGYNVLMPMGWDAFGMPAENAAIKSKVPPA
FT                   KWTYDNIAYMKKQMKAMGLAIDWSREMCACDPKYYKWNQWLFLKMLEKGIAYRKTQVVN
FT                   WDPVDQTVLANEQVIDGRGWRSGAPVEKREIPGYYLRITDYAEELLDQVSTNLPGWPER
FT                   VRLMQENWIGKSEGLRFAFPHRIAGADGKLIQDGKLYVFTTRADTIMGVTFCAVAPEHP
FT                   LATHAAQSNPALAAFVEQCKLGGTTEAEMATREKEGMPTGLTVTHPLTGAEIDVWVGNY
FT                   VLMTYGDGAVMGVPAHDERDFAFARKYGLPIRQVVALEGKTYSTDAWQEWYGDKQAGRT
FT                   VNSGKYDGLAYQAAVDAIAADLAAQGVGEKQTTWRLRDWGISRQRYWGTPIPIIHCADC
FT                   GPVPVPEQDLPVVLPDDLIPDGSGNPLAKNEAFLSCSCPRCGKPARRETDTMDTFVDSS
FT                   WYFMRYTSPDNDQAMVDARNDYWMPMDQYIGGIEHAVLHLLYARFWTKVMRDLGLLNFD
FT                   EPFTKLLCQGMVLNHIYSRKTPQGGIEYFWPEEVDNVYDAKGAIVGAKLQRDGSEVNYG
FT                   GVGTMSKSKNNGVDPQSLIDTLGADTARLFVMFASPPEQTLEWSDSGVEGANRFLRRLW
FT                   ALGYAQREAVGRGLATGADWAQAPAPVKELRREVYGLLKQADYDYQRIQYNTVVSACMK
FT                   MLNAIDDAPLPEGPAADAARAETLGLLLRVLYPVVPHITWHLWQDLGYAEHLGDLLDAP
FT                   WPHVDEAALVADEIELMLQVNGKLRGSIRVAAKAPKEDIERIAAAQEEVARFLEGRPPK
FT                   RVIVVPGKLVNVVG"
FT   misc_feature    complement(79039..81222)
FT                   /note="HMMPfam hit to PF00133, tRNA synthetases class I (I,
FT                   L, M and V)"
FT   misc_feature    complement(81082..81117)
FT                   /note="ScanRegExp hit to PS00178, Aminoacyl-transfer RNA
FT                   synthetases class-I signature. Confirmed by InterPro eMOTIF
FT                   pattern match."
FT   CDS             complement(81336..82538)
FT                   /transl_table=11
FT                   /locus_tag="BP2045"
FT                   /product="putative transmembrane transport protein"
FT                   /note="Similar to many putative transport proteins e.g.
FT                   Escherichia coli O157:H7 putative transport protein ECS3543
FT                   TR:BAB36966 (EMBL:AP002562) (394 aa) fasta scores: E():
FT                   2.3e-76, 58.115% id in 382 aa"
FT                   /db_xref="GOA:Q7VWY6"
FT                   /db_xref="InterPro:IPR011701"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWY6"
FT                   /protein_id="CAE42324.1"
FT                   /translation="MSPARARLTAPIVLLMSVATGLAVASNYYAQPLLHTIGAEFALTT
FT                   ATAGAIVTVAQLSYAVGLILLVPLGDLYERRTLIALMTALSAVGLLLSAFSPGIGWLML
FT                   GTAVTGLLSVVAQVLVPFAATLAEPHERGKVVGAVMSGLLLGILLARTIAGALADLGSW
FT                   RTVYWVAAILMLLMSMALWRVLPRSVNPTRLSYPRLLASIVQLYAQEPLLRARSVLGAL
FT                   LFAAFSMLWTPLTFLLSGPNYGYSNTTIGLFGLAGAIGAYGANRFGRLNDRGQGNRSTR
FT                   QGLLLLASWPLLAWGAHHVAPLLAGVLALDLAIQAVHVTNQSAIYRLRPEARSRLTAGY
FT                   MTSYFLGGAAGSLLSAWIYAHAGWLGVTAAGALTSLAALLYGCLARSARIPETTPAPAI
FT                   A"
FT   misc_feature    complement(81357..82514)
FT                   /note="HMMPfam hit to PF00083, Sugar (and other)
FT                   transporter"
FT   misc_feature    complement(join(81387..81452,81465..81530,81735..81791,
FT                   81822..81887,81981..82046,82077..82133,82173..82238,
FT                   82254..82304,82341..82406,82437..82502))
FT                   /note="10 probable transmembrane helices predicted for
FT                   BP2045 by TMHMM2.0 at aa 12-34, 44-66, 78-95, 100-122,
FT                   135-154, 164-186, 217-239, 249-268, 336-358 and 362-384"
FT   misc_feature    complement(82449..82538)
FT                   /note="Signal peptide predicted for BP2045 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.999) with cleavage site
FT                   probability 0.554 between residues 30 and 31"
FT   CDS             complement(82535..83047)
FT                   /transl_table=11
FT                   /locus_tag="BP2046"
FT                   /product="putative MarR-family transcriptional regulator"
FT                   /note="Similar to e.g. Erwinia chrysanthemi regulatory
FT                   protein PecS, pecS SW:PECS_ERWCH (P42195) (166 aa) fasta
FT                   scores: E(): 3e-17, 38.816% id in 152 aa and Streptomyces
FT                   coelicolor putative MarR-family regulatory protein
FT                   SC8E4A.17 TR:Q9L1Y8 (EMBL:AL138662) (172 aa) fasta scores:
FT                   E(): 2.6e-25, 49.045% id in 157 aa"
FT                   /db_xref="GOA:Q7VWY5"
FT                   /db_xref="HSSP:1JGS"
FT                   /db_xref="InterPro:IPR000835"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWY5"
FT                   /protein_id="CAE42325.1"
FT                   /translation="MKDHVDLVLSQWAHERPDLDVSSMAVLARIFRFNTAALRRIEPLF
FT                   RAAGLHQGQFDLLATLYRAGAPHALSPQQLTAALLLSSGAMTHRLDQLEQGGLIARSPN
FT                   PDDRRGVIVSLTPAGLRTIRQILADYLEAIDALLTPLSATERRQLAGLLKRLLAEHDRT
FT                   TPGGIPQ"
FT   misc_feature    complement(82580..82900)
FT                   /note="HMMPfam hit to PF01047, MarR family"
FT   CDS             complement(83170..83487)
FT                   /transl_table=11
FT                   /gene="bph2"
FT                   /locus_tag="BP2047"
FT                   /product="DNA-binding protein Bph2"
FT                   /note="Histone H1 homologue, DNA-binding protein Bph2, bph2
FT                   TR:P94344 (EMBL:U82555) (145 aa) fasta scores: E():
FT                   2.2e-44, 100.000% id in 145 aa"
FT                   /db_xref="GOA:Q7VWY4"
FT                   /db_xref="HSSP:1EXE"
FT                   /db_xref="InterPro:IPR000119"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWY4"
FT                   /protein_id="CAE42326.1"
FT                   /translation="MRPIKEALNKSQLIAYLVENTGVEAKSVKAVLAGLESSVLASVDK
FT                   KGAGEFTLPGLFKVAVQKVPAKAKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDAA
FT                   Q"
FT   repeat_region   83782..83813
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   83782..84834
FT   CDS             83884..84834
FT                   /transl_table=11
FT                   /locus_tag="BP2048"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q84CT8"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q84CT8"
FT                   /protein_id="CAE42327.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT"
FT   misc_feature    84142..84207
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   misc_feature    84265..84798
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   repeat_region   complement(84803..84834)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             85088..86893
FT                   /transl_table=11
FT                   /locus_tag="BP2049"
FT                   /product="putative sulfate transporter"
FT                   /note="Similar to e.g. Pseudomonas aeruginosa probable
FT                   sulfate transporter PA0029 TR:Q9I7A1 (EMBL:AE004442) (517
FT                   aa) fasta scores: E(): 4e-48, 38.815% id in 523 aa and
FT                   Stylosanthes hamata high affinity sulphate transporter 2
FT                   st2 SW:SUT2_STYHA (P53392) (662 aa) fasta scores: E():
FT                   1.3e-33, 26.165% id in 558 aa"
FT                   /db_xref="GOA:Q7VWY3"
FT                   /db_xref="InterPro:IPR011547"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWY3"
FT                   /protein_id="CAE42328.1"
FT                   /translation="MGKTVRGGAAAILGCWVNDITPGTLRADAQAGLLGALLVLPQGVA
FT                   FAMLAGLPPEYGLYSAIVPCIVAALFGSSRHVLSGPTNANSLALFAVLAPLALPGSPGY
FT                   IQMALAVTILVGVMQLAVGLLRLGSLANFISPSALFGFTSGAALLIAVHALKDALGLEG
FT                   VQAHSAGAVLAAVGSRLGEAHWGASVVALTTIIVTLLVRHWDRRKPHMLAGLAAGTLLA
FT                   AALNAGVFTAAGQPISVLGGLAQPWPPFHVPAVQWSVLPDLVGVAVPLTIVALAQSISI
FT                   AKAVAMRSGQLIDANREFIGQGLSNVVGGLFSSYLSCGSLNRSVPNYEAGARTPMAAVF
FT                   AALLLVLLVLVSSPVLALIPHAAIAGLLIVVAWSLLDLPRWRVLVRIAPREALIAAATL
FT                   AATVTIRMEIAILLGTLLSLTAYLYRTARPAMRPMGFDAADPQRHFAVLEGQPGELPEC
FT                   PQLKLLRMEGSVYFGAATHVTDRLQALRAGASAGQRHLLVMSKSMNFIDHAGAQVWEEE
FT                   LRRRRAGGGDLYFHRPRPEVLRDWRRSGFIDRLGADHIFPDKATAIHTIYERLDPEICR
FT                   GCTARIFTECGPPGTAHQPGAERAE"
FT   misc_feature    join(85178..85246,85394..85462,85475..85543,85634..85687,
FT                   85721..85789,85847..85915,86093..86161,86171..86239,
FT                   86300..86359)
FT                   /note="9 probable transmembrane helices predicted for
FT                   BP2049 by TMHMM2.0 at aa 97-119, 169-191, 196-218, 249-266,
FT                   278-300, 320-342, 402-424, 428-450 and 471-490"
FT   misc_feature    85451..86365
FT                   /note="HMMPfam hit to PF00916, Sulfate transporter family"
FT   misc_feature    86441..86773
FT                   /note="HMMPfam hit to PF01740, STAS domain"
FT   misc_feature    86552..86584
FT                   /note="ScanRegExp hit to PS00626, Regulator of chromosome
FT                   condensation (RCC1) signature 2."
FT   CDS             complement(87007..87174)
FT                   /transl_table=11
FT                   /gene="rpmG"
FT                   /locus_tag="BP2050"
FT                   /product="50S ribosomal protein L33"
FT                   /note="Similar to e.g. Escherichia coli and Salmonella
FT                   typhimurium 50S ribosomal protein L33, rpmG or B3636
FT                   SW:RL33_ECOLI (P02436) (54 aa) fasta scores: E(): 1.9e-14,
FT                   75.926% id in 54 aa"
FT                   /db_xref="GOA:Q7VWY2"
FT                   /db_xref="InterPro:IPR018264"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VWY2"
FT                   /protein_id="CAE42329.1"
FT                   /translation="MAKDIREKIKLESTAGTGHFYTTTKNKRNMPEKMLIKKFDPVARK
FT                   HVDYKETKLK"
FT   misc_feature    complement(87016..87159)
FT                   /note="HMMPfam hit to PF00471, Ribosomal protein L33"
FT   CDS             complement(87238..87474)
FT                   /transl_table=11
FT                   /gene="rpmB"
FT                   /locus_tag="BP2051"
FT                   /product="50S ribosomal protein L28"
FT                   /note="Similar to e.g. Escherichia coli 50S ribosomal
FT                   protein L28, rpmB or B3637 SW:RL28_ECOLI (P02428) (77 aa)
FT                   fasta scores: E(): 6.9e-21, 74.667% id in 75 aa"
FT                   /db_xref="GOA:Q7VWY1"
FT                   /db_xref="InterPro:IPR001383"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VWY1"
FT                   /protein_id="CAE42330.1"
FT                   /translation="MARVCQVTGKGPMVGNNVSHANNKTKRRFLPNLQSRRFWVESENR
FT                   WVRLRVTAKAIRTIDKNGIDAVLADLRARGEAV"
FT   misc_feature    complement(87286..87468)
FT                   /note="HMMPfam hit to PF00830, Ribosomal L28 family"
FT   CDS             complement(87843..89042)
FT                   /transl_table=11
FT                   /locus_tag="BP2052"
FT                   /product="putative transmembrane transport protein"
FT                   /note="Similar to many e.g. Pseudomonas aeruginosa probable
FT                   MFS transporter PA3573 TR:Q9HY47 (EMBL:AE004778) (392 aa)
FT                   fasta scores: E(): 2.1e-54, 45.455% id in 396 aa"
FT                   /note="and Escherichia coli bicyclomycin resistance
FT                   protein, bcr or b2182 SW:BCR_ECOLI (P28246) (396 aa) fasta
FT                   scores: E():2.3e-39, 35.476% id in 389 aa"
FT                   /db_xref="GOA:Q7VWY0"
FT                   /db_xref="InterPro:IPR011701"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWY0"
FT                   /protein_id="CAE42331.1"
FT                   /translation="MPPQTISRSMPGWLILMGALTAIGPFSIDMYLPAFPSIAAGLGVE
FT                   RGEVERTLAAYLIGMAGAQIIYGPLADRYGRKLPMMGGLILYVLASLGCALADDIQTLT
FT                   ACRVAQALGGAAGVVIPRAVIRDHYETQEAARAMSLLMLLMGLAPILAPLAGAQLLAFV
FT                   GWRSLFWLMAAGGLALLLAVALTMKETLAPERVLPLRAGTILSNYRALLAHRGFMGHSL
FT                   AGGMGQAGMFAYIVGSPRIFIELYGIAPQYYGLLFGANAAALIVGSQISARLLRKSAPA
FT                   TLQQRAQVALAVASLSALALALALLGLMSLPLLMACLMGYMFSQGFVNPNSAALALAEQ
FT                   GRRLGAASALLGTLQLSCGALAGLIISIWPAESVLPLAAVLAGSACLSWQFGRMARRPA
FT                   "
FT   misc_feature    complement(join(87882..87947,88104..88169,88233..88298,
FT                   88329..88394,88488..88553,88566..88631,88668..88721,
FT                   88752..88808,88830..88895,88941..89006))
FT                   /note="10 probable transmembrane helices predicted for
FT                   BP2052 by TMHMM2.0 at aa 12-34, 49-71, 78-97, 107-125,
FT                   137-159, 163-185, 216-238, 248-270, 291-313 and 365-387"
FT   misc_feature    complement(88926..89042)
FT                   /note="Signal peptide predicted for BP2052 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.968) with cleavage site
FT                   probability 0.953 between residues 39 and 40"
FT   CDS             join(89202..90221,90223..90459)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2053"
FT                   /product="putative cyclopropane-fatty-acyl-phospholipid
FT                   synthase (pseudogene)"
FT                   /note="Pseudogene. This CDS appears to have a frameshift
FT                   mutation following codon 340. The sequence has been checked
FT                   and believed to be correct. Similar to e.g. Mycobacterium
FT                   tuberculosis cyclopropane-fatty-acyl-phospholipid synthase
FT                   1, CmaA1 or Cma1 or Rv3392c SW:CFA1_MYCTU (Q11195) (287 aa)
FT                   fasta scores: E(): 5.7e-34, 40.217% id in 276 aa"
FT                   /db_xref="PSEUDO:CAE42332.1"
FT   misc_feature    join(89865..90221,90223..90366)
FT                   /note="HMMPfam hit to PF02353,
FT                   Cyclopropane-fatty-acyl-phospholipid synthase"
FT   variation       90222..90223
FT                   /note="GG in pertussis; G(ACGCGCTG)G in parapertussis and
FT                   bronchiseptica"
FT   repeat_region   90456..90487
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   90456..91508
FT   CDS             90558..91508
FT                   /transl_table=11
FT                   /locus_tag="BP2054"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTA4"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTA4"
FT                   /protein_id="CAE42333.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS"
FT   misc_feature    90816..90881
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   misc_feature    90939..91472
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   repeat_region   complement(91477..91508)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             91960..92961
FT                   /transl_table=11
FT                   /locus_tag="BP2055"
FT                   /product="putative periplasmic substrate-binding protein"
FT                   /note="Similar to many e.g. Escherichia coli glycine
FT                   betaine-binding periplasmic protein, proX or proU or b2679
FT                   SW:PROX_ECOLI (P14177) (330 aa) fasta scores: E(): 4e-08,
FT                   24.096% id in 332 aa. Also similar to BP3572, 53.012%
FT                   identity (53.659% ungapped) in 332 aa overlap."
FT                   /db_xref="GOA:Q7VWX9"
FT                   /db_xref="InterPro:IPR007210"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWX9"
FT                   /protein_id="CAE42334.1"
FT                   /translation="MRFTPVKTLAALAALCAFSGAAQAADKPQCEVSRPVNFGGMNWES
FT                   NLVLVDIERFIMEKGYGCKTEVLPTETLPALAALERGDLDINTEIWLNSVADPWDRAQK
FT                   TGKVKRVGELYMGGEAWFVPRYTAERLPELKSAADLPKFKDRFKDPEEPGKGRFYGCPA
FT                   GWGCEVTSTNLFHALKLGDSYTLYSPGTGAAQKAALMSAYKRKQDVVFYYWYPTPLVGS
FT                   MDLVKLELPPYDAEKHKCLTAPKCSDPQPSAYPENPVFTAVNTRFSEEAPKLTEFLSKV
FT                   AVPLPVMDQTLAHMEESGDESGAVAQWFLKNQADVWKKWVPADVAERVQTAL"
FT   misc_feature    91960..92031
FT                   /note="Signal peptide predicted for BP2055 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 1.000 between residues 24 and 25"
FT   CDS             93134..93991
FT                   /transl_table=11
FT                   /locus_tag="BP2056"
FT                   /product="putative binding-protein-dependent transport
FT                   protein"
FT                   /note="Similar to many e.g. Escherichia coli glycine
FT                   betaine/L-proline transport system permease protein, proW
FT                   or b2678 SW:PROW_ECOLI (P14176) (354 aa) fasta scores: E():
FT                   1.4e-42, 47.566% id in 267 aa"
FT                   /db_xref="GOA:Q7VWX8"
FT                   /db_xref="InterPro:IPR000515"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWX8"
FT                   /protein_id="CAE42335.1"
FT                   /translation="MFPEVIPARAVRGAIDGFVDHLVTNYADTLEAMSQPFLSVLVWLE
FT                   QVLRQSPWWAVVAVTIAIAWLVSRRIGLSLAMGALLCVIGVLGLWDAGMQTLALMIMAA
FT                   GLSVVIGIPLGVLMARVDWLRAGMLPVLDVMQTMPSFVYLIPVVMLFGLGKIPAIIATV
FT                   IYAVPPLIRLTDLGIRLVDREVLEAARAFGANPRQQLFGVQLPLALPNIMAGINQTTMM
FT                   ALSMVVIASMIGARGLGYEVLLGINRLEVGRGLLAGLGIVVLAVLFDRITQSYGQRVRT
FT                   GGQR"
FT   misc_feature    join(93344..93403,93422..93490,93557..93625,93803..93871,
FT                   93884..93937)
FT                   /note="5 probable transmembrane helices predicted for
FT                   BP2056 by TMHMM2.0 at aa 71-90, 97-119, 142-164, 224-246
FT                   and 251-268"
FT   misc_feature    93662..93874
FT                   /note="HMMPfam hit to PF00528, Binding-protein-dependent
FT                   transport systems inner membrane component"
FT   misc_feature    93665..93751
FT                   /note="ScanRegExp hit to PS00402, Binding-protein-dependent
FT                   transport systems inner membrane comp. sign. Confirmed by
FT                   InterPro eMOTIF pattern match."
FT   CDS             93988..95250
FT                   /transl_table=11
FT                   /locus_tag="BP2057"
FT                   /product="putative ABC-transporter ATP-binding protein"
FT                   /note="Similar to many e.g. Lactococcus lactis BusaA busaA
FT                   TR:Q9RQ06 (EMBL:AF139575) (407 aa) fasta scores: E():
FT                   1.8e-58, 47.783% id in 406 aa and to Salmonella typhimurium
FT                   glycine betaine/L-proline transport ATP-binding protein
FT                   ProV proV SW:PROV_SALTY (P17328) (400 aa) fasta scores:
FT                   E(): 6.2e-58, 46.770% id in 387 aa"
FT                   /db_xref="GOA:Q7VWX7"
FT                   /db_xref="HSSP:1B0U"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWX7"
FT                   /protein_id="CAE42336.1"
FT                   /translation="MSKIEVKNIYKIFGPHPGKWLQAARDGISKEDLLAKSGHTLGLRD
FT                   ISLSIEEGSIYVIMGLSGSGKSTLIRHFNRLIEPSAGHILVDGVDVVSLNKRDLETFRQ
FT                   KKMSMVFQRFGLFPHRTVLDNAGYGLAVQGVARAEREQRARHWLDQVGLSGFENQYPHQ
FT                   LSGGMQQRVGLARALATDAEILLMDEAFSALDPLIRREMQDHLLQLQAKLNKTIVFITH
FT                   DLDEALRLGNRIAILKDGELVQEGTPEDILLNPATEYVQSFLQDVNRTKVLNAAHAVNP
FT                   PRLTLTMRSRPAHALDRMQALSYEYAPVLDGKRLAGVLMAAAAQQAVDEGARDVSRFVE
FT                   DLASVPATAGLDQVLAQLVHSDQPVAVTGEGDEFIGMLSRKKVVELVTPVLAESDSADG
FT                   QGDAADAASDGAGQAHERDAA"
FT   misc_feature    94144..94707
FT                   /note="HMMPfam hit to PF00005, ABC transporter"
FT   misc_feature    94165..94188
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   misc_feature    94477..94521
FT                   /note="ScanRegExp hit to PS00211, ABC transporters family
FT                   signature. Confirmed by InterPro eMOTIF pattern match."
FT   CDS             95351..95725
FT                   /transl_table=11
FT                   /locus_tag="BP2058"
FT                   /product="putative tautomerase"
FT                   /note="Shows weak similarity over the N-terminal 60
FT                   residues to tautomerases e.g. Pseudomonas putida
FT                   4-oxalocrotonate tautomerase xylH SW:XYLH_PSEPU (Q01468)
FT                   (62 aa) fasta scores: E(): 0.017, 33.333% id in 60 aa.
FT                   Shows full-length similarity to putative tautomerases e.g.
FT                   Pseudomonas pavonaceae putative tautomerase TR:Q9EV83
FT                   (EMBL:AJ290446) (130 aa) fasta scores: E(): 0.0049, 35.484%
FT                   id in 124 aa and to hypothetical proteins"
FT                   /db_xref="GOA:Q7VWX6"
FT                   /db_xref="InterPro:IPR014347"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWX6"
FT                   /protein_id="CAE42337.1"
FT                   /translation="MPLLNVQIMQGHQPAQKSALLAAACQAVVDSIGAPLASVRVVLEE
FT                   VPAAHVIVAGELGRQMALVTVDMIAGRTDEQKEALIGALNRAVCDSIGIDGTDVRVMIH
FT                   DVSKANMGVANGISARAAGR"
FT   misc_feature    95396..95509
FT                   /note="HMMPfam hit to PF01361, Tautomerase enzyme"
FT   RBS             95782..95787
FT                   /note="possible RBS"
FT   CDS             95798..96985
FT                   /transl_table=11
FT                   /locus_tag="BP2059"
FT                   /product="putative thiolase"
FT                   /note="Similar to many thioloases e.g. Alcaligenes
FT                   eutrophus beta-ketothiolase bktB TR:O68275 (EMBL:AF026544)
FT                   (394 aa) fasta scores: E(): 3.1e-106, 75.897% id in 390 aa
FT                   and Clostridium acetobutylicum acetyl-CoA acetyltransferase
FT                   thl or CAC2873 SW:THL_CLOAB (P45359) (392 aa) fasta scores:
FT                   E(): 8.6e-70, 52.051% id in 390 aa"
FT                   /db_xref="GOA:Q7VWX5"
FT                   /db_xref="HSSP:1DLU"
FT                   /db_xref="InterPro:IPR002155"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWX5"
FT                   /protein_id="CAE42338.1"
FT                   /translation="MNEVVVVVVAAARTAIGDFGGGLKDVAPCDLGATVIREALARAGV
FT                   AGPEVGHVAVGHVINTEPRDMYLSRVAAINAGIGKETPAFNVNRLCGSGLQAIVSAAQT
FT                   IMLGDTEIAVGAGAESMSRAPYIAPAQRWGARMGDSAMVDMMTGALSDPFGRMHMGVTA
FT                   ENVAARYSISRADQDALAVESHRRAAAAIDAGRFRDQIVPVTLKTRKGETVFDTDEHVR
FT                   RDITIEGMAALRPVFQKENGTVTAGNASGLNDGAGAVVLMSAAAAAQRGIAPMARLVAY
FT                   AHAGVDPEIMGIGPVPATQAALKRAGLTVDQLDVIEANEAFAAQACAVTRQLELDPAKV
FT                   NPNGSGISLGHPIGATGAIITVKALYELQRVGGRYALVTMCIGGGQGIAAIFERV"
FT   misc_feature    95813..96982
FT                   /note="HMMPfam hit to PF00108, Thiolase, N-terminal domain"
FT   misc_feature    96056..96112
FT                   /note="ScanRegExp hit to PS00098, Thiolases acyl-enzyme
FT                   intermediate signature. Confirmed by InterPro eMOTIF
FT                   pattern match."
FT   misc_feature    96923..96964
FT                   /note="ScanRegExp hit to PS00099, Thiolases active site."
FT   CDS             97070..97840
FT                   /transl_table=11
FT                   /locus_tag="BP2060"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to many hypothetical proteins e.g. Neisseria
FT                   meningitidis putative transferase NMA1087 or NMB0869
FT                   TR:Q9JQL8 (EMBL:AL162755) (263 aa) fasta scores: E():
FT                   1.5e-19, 32.432% id in 259 aa and Pseudomonas aeruginosa
FT                   hypothetical protein PA2842 TR:Q9I001 (EMBL:AE004711) (249
FT                   aa) fasta scores: E(): 1.3e-06, 25.909% id in 220 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWX4"
FT                   /protein_id="CAE42339.1"
FT                   /translation="MPIRYTPSELDQPSLSEADGIRYLHFGTEWVQGAMLIRDPARLVL
FT                   EYTAQMMAWLLFLEPPREQSIGLLGLGAGSLARFCLKHTRSPVTVVEWNPQVTAVCQMF
FT                   FRLPTPQRLDVHHDDAGAWVADPARAGDCPVLMVDLYDAQARGPVRDSVKFYRDCRRVL
FT                   GEVGVLSVNLFGRHESYGRNIDNLSKAFDDRLVLLPEIDAGNQIVLAFSGPPLAITPAE
FT                   LLARAETVEAQYGLPARRWARALTRHAVDGVLHF"
FT   CDS             97954..98718
FT                   /transl_table=11
FT                   /locus_tag="BP2061"
FT                   /product="putative gntR-family transcriptional regulator"
FT                   /note="Similar to many putative transcriptional regulators
FT                   e.g. Rhizobium meliloti putative transcriptional regulator
FT                   SMB20773 TR:CAC49865 (EMBL:AL603647) (228 aa) fasta scores:
FT                   E(): 6.7e-17, 38.350% id in 206 aa and Acinetobacter
FT                   calcoaceticus putative transcriptional repressor MdcY mdcY
FT                   TR:Q9F0Q8 (EMBL:AF209728) (224 aa) fasta scores: E():
FT                   3.9e-15, 33.498% id in 203 aa"
FT                   /db_xref="GOA:Q7VWX3"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWX3"
FT                   /protein_id="CAE42340.1"
FT                   /translation="MTTPIVRQALYLEVADRLRTMIRTHALGAGAWVDEAGLTEQLGIS
FT                   RTPLREALKVLATEGLVRLEPGRGCFVNELTVRDLEQIFPLMAMLEGRCAFEAAQRAGE
FT                   DDLRALEPLHRALQAHAQAGRIDAYYETNYRIHVAVQTLADNRWLSDMVDNLRKVLSLF
FT                   RHKSLALPGRIRESCAEHMAIFAALKARDLEGAEALTRKHLLRQLAALQALAGQEPAGG
FT                   AAAIDSPAVQAVQELNHVRTRSPGIRTRRTHA"
FT   misc_feature    97993..98169
FT                   /note="HMMPfam hit to PF00392, Bacterial regulatory
FT                   proteins, gntR family"
FT   RBS             98657..98661
FT                   /note="possible RBS"
FT   CDS             98669..99970
FT                   /transl_table=11
FT                   /locus_tag="BP2062"
FT                   /product="putative malonyl-CoA decarboxylase"
FT                   /note="Similar to e.g. Rhizobium leguminosarum malonyl-CoA
FT                   decarboxylase matA TR:Q9ZIP6 (EMBL:AF117694) (462 aa) fasta
FT                   scores: E(): 4.7e-36, 46.012% id in 326 aa and Homo sapiens
FT                   malonyl-CoA decarboxylase, mitochondrial precursor mlycD
FT                   SW:DCMC_HUMAN (O95822) (493 aa) fasta scores: E(): 2.3e-28,
FT                   35.714% id in 434 aa"
FT                   /db_xref="GOA:Q7VWX2"
FT                   /db_xref="InterPro:IPR007956"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWX2"
FT                   /protein_id="CAE42341.1"
FT                   /translation="MSALDPQASARVARTPDAEPEAVDASAAGESAGLIARLGRLFERD
FT                   RLPPPADLAQLFEARLTDVRANKLAQAWRLAYEQADGKRRRAMLGGLAQVGAGMQGDGA
FT                   QGTRLFKRFNALPDGLRFLVALRADMLRWRKQVAGLQALDKELEALLSAWFDVGLLELR
FT                   PLTWDSPASLLEKLILYEAVHEIRSWDDLRHRVAGDRRCYAYFHPQMPDVPLIFVEVAF
FT                   SAQMADNVQALLDTSAPPQDLDKARWAIFYSISNTQPGLRGISFGNFLLKRVIDRLLQE
FT                   LPKLKFFATLSPIPGFVDWLSRLDAQEVEQAVRDKARTRSGAPDGARWVARLARAATGK
FT                   PSEVVQRAGLRLAARYLQAMRAGQPLDPVARFHLGNGARIERLNWAADTSAKGLAQSCG
FT                   MMVNYLYELGELDGNLARLNEGKPQVSRGIARLG"
FT   CDS             99967..100773
FT                   /transl_table=11
FT                   /locus_tag="BP2063"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to many enoyl-CoA hydratase family proteins
FT                   e.g. Streptomyces coelicolor putative enoyl CoA hydratase
FT                   SC5f2A.31C TR:Q9X7Q4 (EMBL:AL049587) (257 aa) fasta scores:
FT                   E(): 6.3e-22, 37.121% id in 264 aa. Not similar enough to
FT                   experimentally characterised proteins to suggest function"
FT                   /db_xref="GOA:Q7VWX1"
FT                   /db_xref="HSSP:1DCI"
FT                   /db_xref="InterPro:IPR001753"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWX1"
FT                   /protein_id="CAE42342.1"
FT                   /translation="MSRAMKPNSPPGQILCRIDAGVAHVTLSHPGRMNAMTVAMWRQLR
FT                   EVFEALGADAALRCVVVAGAEGHFAAGADIREFPAERADLAGVQRYHREILAPALAAVA
FT                   ACPHPVLARIEGVCVGGGLEIAAQCDLRIAAESARFGVPIGKLGFPMAPDEMRGLLDLV
FT                   GRAVTLAILLEGRVFDAAEALRLGLVTRTVPAAELDQAVQRSVAAILGGAPQAARLNKR
FT                   QARRLCAGAPLGEDEYLDFFSYAESRDHREGVRAFLAGTAPTFTGD"
FT   misc_feature    100033..100548
FT                   /note="HMMPfam hit to PF00378, Enoyl-CoA
FT                   hydratase/isomerase family"
FT   CDS             join(100779..101348,101352..102320)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2064"
FT                   /product="putative malonyl-CoA synthetase (pseudogene)"
FT                   /note="Pseudogene. This CDS contains an in-frame TAA stop
FT                   codon. The sequence has been checked and believed to be
FT                   correct. Similar to Rhizobium leguminosarum malonyl-CoA
FT                   synthetase MatB TR:Q9ZIP5 (EMBL:AF117694) (504 aa) fasta
FT                   scores: E(): 1.5e-70, 55.447% id in 514 aa"
FT                   /db_xref="PSEUDO:CAE42343.1"
FT   misc_feature    101262..101297
FT                   /note="ScanRegExp hit to PS00455, Putative AMP-binding
FT                   domain signature."
FT   variation       101349..101351
FT                   /note="In-frame TAA stop codon in pertussis; CAA in
FT                   parapertussis and bronchiseptica"
FT   misc_feature    101376..102101
FT                   /note="HMMPfam hit to PF00501, AMP-binding enzyme"
FT   CDS             102518..103489
FT                   /transl_table=11
FT                   /locus_tag="BP2066"
FT                   /product="putative exported protein"
FT                   /note="Similar to many bacterial hypothetical proteins e.g
FT                   Rhizobium meliloti conserved hypothetical protein SMA1927
FT                   TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E():
FT                   9.6e-47, 43.396% id in 318 aa"
FT                   /db_xref="GOA:Q7VWX0"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWX0"
FT                   /protein_id="CAE42344.1"
FT                   /translation="MKYPILGAALIAATALGAAAPAQAAWPERPVTIIVPFPAGGGTDT
FT                   FARPLAQQLGMQLGQSVVIDNKGGAGGTVGAAVASKAKPDGYTFFMGGAHHALAPSLYK
FT                   NLSYDIQKDFVPVALLAQPPQVVVINTAKLPVKSLQEFIEYARKRPGDINFGTAGKGST
FT                   HHLAGELFAMQTGIKLVDVPYQGAGPMLSALIGGQVDLAFDGLGSSAGHIRAGTIKPLA
FT                   VAAPQRSPSFPDVPTAKEAGVPNYEVSTWYALWAPAGTPQEAVDKMTAAVTKALNDPKI
FT                   RETWAGNGSAIPDLTGPQFGAFVDSEVTRWAKVVKDSGVTLD"
FT   misc_feature    102518..102589
FT                   /note="Signal peptide predicted for BP2066 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.982 between residues 24 and 25"
FT   RBS             103634..103639
FT                   /note="putative RBS"
FT   CDS             103646..104158
FT                   /transl_table=11
FT                   /locus_tag="BP2067"
FT                   /product="putative superoxide dismutase"
FT                   /EC_number="1.15.1.1"
FT                   /note="Similar to many e.g. Salmonella typhimurium
FT                   superoxide dismutase [Cu-Zn] precursor sodC SW:SODC_SALTY
FT                   (P53636) (177 aa) fasta scores: E(): 2.2e-31, 55.294% id in
FT                   170 aa"
FT                   /db_xref="GOA:Q7VWW9"
FT                   /db_xref="HSSP:1EQW"
FT                   /db_xref="InterPro:IPR018152"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWW9"
FT                   /protein_id="CAE42345.1"
FT                   /translation="MKSLIALALAAMSGVAAAQSVEMSLLSPKGDDQKIGQIKYEQTDY
FT                   GVLFTPDLHGLAPGVHGFHLHDKPSCAMTKVDGKDMVGGGAGGHWDPDKTGAHKGPYDK
FT                   TGHKGDLPAVYVAADGKATYPVLAPRLKVADLAGHALMIHVGGDNYSDHPAALGGGGGR
FT                   MACGVVK"
FT   misc_feature    103646..103699
FT                   /note="Signal peptide predicted for BP2067 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.931 between residues 33 and 34"
FT   misc_feature    103706..104155
FT                   /note="HMMPfam hit to PF00080, Copper/zinc superoxide
FT                   dismutase (SODC)"
FT   misc_feature    103829..103861
FT                   /note="ScanRegExp hit to PS00087, Copper/Zinc superoxide
FT                   dismutase signature 1."
FT   misc_feature    104117..104152
FT                   /note="ScanRegExp hit to PS00332, Copper/Zinc superoxide
FT                   dismutase signature 2."
FT   CDS             104317..105291
FT                   /transl_table=11
FT                   /locus_tag="BP2068"
FT                   /product="putative exported protein"
FT                   /note="Similar to many hypothetical proteins e.g.
FT                   Pseudomonas aeruginosa hypothetical protein PA3836
FT                   TR:Q9HXG8 (EMBL:AE004801) (325 aa) fasta scores: E():
FT                   1.9e-83, 76.543% id in 324 aa"
FT                   /db_xref="InterPro:IPR007487"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWW8"
FT                   /protein_id="CAE42346.1"
FT                   /translation="MLIGKKHFLTVGALALAMAIHAAPVMAQQKSVAITAIVEHPALDS
FT                   VRDGVQDALKQAGYESGKNLKWQYQSAQGNTGTAAQIARKLVGDRPDVIVAIATPSAQA
FT                   VVAATKDVPVVYSAVTDPVAAQLVPSMEASNTNVTGVSDLLALDKQIELIKKVVPNAKR
FT                   VGMVYNPGEANSVVVVKQMQDLLPKAGMTLVEAAAPRTVDVASAARSLIGKVDVIYTNT
FT                   DNNVVSAYESLVKVGNDAKIPLVASDTDSVKRGAIAALGINYRDLGVQTGKMVVRILKG
FT                   EKPGAMPSETSSKLELYVNPGAAAKQGVTLSDALVKSAAQVIK"
FT   misc_feature    104317..104397
FT                   /note="Signal peptide predicted for BP2068 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.987 between residues 27 and 28"
FT   CDS             join(105401..105508,105508..106290)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2069"
FT                   /product="putative transmembrane component of ABC
FT                   transporter (pseudogene)"
FT                   /note="Pseudogene. This CDS appears to have a frameshift
FT                   mutation following codon 36. The sequence has been checked
FT                   and believed to be correct. Similar to Pseudomonas
FT                   aeruginosa probable permease of ABC transporter Pa3837
FT                   SWALL:Q9HXG7 (EMBL:AE004801) (296 aa) fasta scores: E():
FT                   5e-86, 84.45% id in 296 aa, and to Ralstonia solanacearum
FT                   putative transmembrane ABC transporter protein Rsc1739 or
FT                   Rs02927 SWALL:CAD15441 (EMBL:AL646066) (303 aa) fasta
FT                   scores: E(): 2.9e-79, 75.68% id in 292 aa"
FT                   /db_xref="PSEUDO:CAE42347.1"
FT   variation       105507
FT                   /note="(C)1 in pertussis; (C)2 in parapertussis and
FT                   bronchiseptica"
FT   misc_feature    join(105574..105642,105661..105720,105790..105858,
FT                   105934..106002,106030..106089,106102..106161,
FT                   106204..106257)
FT                   /note="7 probable transmembrane helices predicted for
FT                   BP2069 by TMHMM2.0 at aa 13-35, 42-61, 85-107, 133-155,
FT                   165-184, 189-208 and 223-240"
FT   CDS             106292..107086
FT                   /transl_table=11
FT                   /locus_tag="BP2070"
FT                   /product="putative ABC-transporter ATP-binding component"
FT                   /note="Similar to many ABC-transporter ATP-binding
FT                   components e.g. Pseudomonas aeruginosa probable ATP-binding
FT                   component of ABC transporter pa3838 TR:Q9HXG6
FT                   (EMBL:AE004801) (264 aa) fasta scores: E(): 2.1e-76,
FT                   88.258% id in 264 aa"
FT                   /db_xref="GOA:Q7VWW7"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWW7"
FT                   /protein_id="CAE42348.1"
FT                   /translation="MLSAKDLHITFNAGTPIETRALRGLSLDIPNGQFVTVIGSNGAGK
FT                   STFLNAISGDLPVDTGTIRINDADVTRQPVWERAGRVARVFQDPMAGTCEDLTIEENMA
FT                   LAQMRGARRGFSRAVKASMREGFRERLATLGLGLENRLADRIGLLSGGQRQAVSLLMAA
FT                   LQPSRILLLDEHTAALDPRTADFVLQLTARIVAESQLTTMMVTHSMRRALDVGERTVML
FT                   HQGQVVLDVSGDERKGMDVPDLLAMFERVRGEKLSDDALLLG"
FT   misc_feature    106385..106966
FT                   /note="HMMPfam hit to PF00005, ABC transporter"
FT   misc_feature    106406..106429
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   misc_feature    106736..106780
FT                   /note="ScanRegExp hit to PS00211, ABC transporters family
FT                   signature."
FT   CDS             complement(107112..107918)
FT                   /transl_table=11
FT                   /locus_tag="BP2071"
FT                   /product="putative molybdenum-binding protein"
FT                   /note="Similar to Azotobacter vinelandii molybdenum
FT                   transport protein ModA SW:MODA_AZOVI (P37733) (270 aa)
FT                   fasta scores: E(): 3e-33, 46.341% id in 246 aa and
FT                   Rhodobacter capsulatus molybdenum-pterin binding protein
FT                   MopA SW:MOPA_RHOCA (Q08385) (265 aa) fasta scores: E():
FT                   7.6e-27, 42.308% id in 260 aa"
FT                   /db_xref="GOA:Q7VWW6"
FT                   /db_xref="HSSP:1B9N"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWW6"
FT                   /protein_id="CAE42349.1"
FT                   /translation="MSAPSLQLDGTLWLRSGDQPWGGQHRIDLLAQIEATGSISAAARA
FT                   AGMSYKGAWDAIDAMNNLAGEPLVLRSAGGRGGGGTRLTDRARRLIATFRALQAEHQRF
FT                   VQHLAASGLDAAGDIDIMRRFMLKTSARNRLLGTVEAVHAGAVNDEIVLRIAGGQRIAA
FT                   VITRASTEELGLAPGTQAIALIKAQAVLLGLPGPGLRLSARNQLPGKVAEVRPGAVNSE
FT                   IIVDLDGGGTLAAIITEESARDLALAAGMPVCALFDAASVMLGVLD"
FT   misc_feature    complement(107523..107900)
FT                   /note="HMMPfam hit to PF02573, N-terminal HTH domain of
FT                   molybdenum-binding protein"
FT   CDS             108029..108619
FT                   /transl_table=11
FT                   /locus_tag="BP2072"
FT                   /product="putative lipoprotein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein PA4793 TR:Q9HV15 (EMBL:AE004892) (187 aa) fasta
FT                   scores: E(): 4.2e-06, 27.374% id in 179 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWW5"
FT                   /protein_id="CAE42350.1"
FT                   /translation="MQIVKLLTVSVAAGLLAGCASGPTLRSDYDHSANFAQYRTFAFMS
FT                   PLGTDRAGYSSLLTERLKQATRGQLEMRGYTYDESKPDLLVNFNGKLQEKTQVTPAPPP
FT                   MGPYYGYRAGFYGGWPGYGWGDDVYQYTEGTLNIDLIDARRRQLVWEGVATGEVNDLDK
FT                   AQSAASVEQGVAQIFSKYPFRAGNGQPQTPPKP"
FT   misc_feature    108029..108106
FT                   /note="Signal peptide predicted for BP2072 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.994) with cleavage site
FT                   probability 0.775 between residues 26 and 27"
FT   misc_feature    108053..108085
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             108630..109808
FT                   /transl_table=11
FT                   /locus_tag="BP2073"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to hypothetical proteins e.g. Rhizobium loti
FT                   hypothetical protein MLR2398 TR:Q98IH7 (EMBL:AP002999) (390
FT                   aa) fasta scores: E(): 7.7e-67, 52.660% id in 376 aa"
FT                   /db_xref="GOA:Q7VWW4"
FT                   /db_xref="InterPro:IPR002641"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWW4"
FT                   /protein_id="CAE42351.1"
FT                   /translation="MSKRKARRGAGMLDYETVALVLQGGGALGAYQAGVYEGLHAAGIR
FT                   PNWLAGISIGGINAAIIAGAPVDERVGRLRGFWEAICRPTGFAGLPWGDAWAALFANAP
FT                   FGFGSNQSNGQLAAFNALTRGQPGFFEPRFPPPYLVQGGGAAATSFYDTTPLLQTLRDY
FT                   VDFDLLNRGDVRVSLGAVNVRTGNFAYFDSRETVIRPEHVMASGALPPGFPAIEIDGEF
FT                   YWDGGLVSNTPLTKVLAVHPMRDTLAFQVDLWPARGPLPASLEEVAERQKDIQYSSRTR
FT                   IVTDTFRRQLKLRRSLQRVLDRLPARVRSSPELAEVRREACTPLVNVVNLIYEANQFER
FT                   HSKDYEFNTESMREHWRFGLADIERTLAQPGVLDKPSPDESFVTHDIHRADA"
FT   CDS             109911..110285
FT                   /transl_table=11
FT                   /locus_tag="BP2074"
FT                   /product="putative DNA-binding protein"
FT                   /note="Similar to the C-termini of two-component response
FT                   regulators e.g. Rhodobacter sphaeroides DmsR dmsR TR:O32479
FT                   (EMBL:D89075) (232 aa) fasta scores: E(): 1.9e-05, 36.842%
FT                   id in 114 aa. Possibly a pseudogene"
FT                   /db_xref="GOA:Q7VWW3"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWW3"
FT                   /protein_id="CAE42352.1"
FT                   /translation="MSLRRSASFPAAKPSAGAQPWELRYQAWVLVTPAGAIVHLSAAER
FT                   ICMLGLLAHPRRELTRAALVQSLPGLGAGAINVVISRLRRKVGETGEVLPLRTVHGMGY
FT                   VFLAGLRSDTAPPQATPAAG"
FT   misc_feature    110133..110219
FT                   /note="HMMPfam hit to PF00486, Transcriptional regulatory
FT                   protein, C terminal"
FT   CDS             110538..111884
FT                   /transl_table=11
FT                   /locus_tag="BP2075"
FT                   /product="putative efflux system inner membrane protein"
FT                   /note="Similar to e.g. Escherichia coli acriflavine
FT                   resistance protein E precursor acrE or envC or b3265
FT                   SW:ACRE_ECOLI (P24180) (385 aa) fasta scores: E(): 1.4e-43,
FT                   47.684% id in 367 aa and Neisseria gonorrhoeae membrane
FT                   fusion protein MtrC precursor mtrC SW:MTRC_NEIGO (P43505)
FT                   (412 aa) fasta scores: E(): 2.5e-37, 41.304% id in 414 aa.
FT                   Probably attached to inner membrane"
FT                   /db_xref="GOA:Q7VWW2"
FT                   /db_xref="InterPro:IPR006143"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWW2"
FT                   /protein_id="CAE42353.1"
FT                   /translation="MRFSPQRVSAFGLVATLSVLLAACGEKPQFNPGMPQVSVITVQPQ
FT                   RAAVVSELPGRVDAVRDAQIRARVTGIVQKIAFEQGGDVQADQLLFKIDPAPYQAAYDQ
FT                   ATAQLKQAQADLFSAKLLAERYAPLVKANAVSKQEYDNAVARYRQADASVAAAKANLTN
FT                   AKINLGYTDVTSPIKGRIGKPLVTEGALVEATSATQMATVQQLDPIYVDFTQSTADLAA
FT                   LRAFAAGKLQQVGKDAVKVQVVLEDGSIYPEAGKLLFTGVTVDPTTGQVNLRAEVPNPD
FT                   NILLPGMYVRVRVDQGVDDKALLVPQQALQRTADGMQSLMLVKDNKVEQVPVTTGSVIH
FT                   NQWVINSGLAAGDVVVVEGFQKIRPGAPVQASPWNKGGAAPAGQQPAPGQQAPAQQPAK
FT                   QQPAKQEPAKQEPAKQEPAKQEPAKQEPAKQEPAKQEPAKQAPAAGQQS"
FT   misc_feature    110577..110609
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    110718..111608
FT                   /note="HMMPfam hit to PF00529, HlyD family secretion
FT                   protein"
FT   CDS             111951..115181
FT                   /transl_table=11
FT                   /locus_tag="BP2076"
FT                   /product="putative efflux system transmembrane protein"
FT                   /note="Similar to e.g. Escherichia coli acriflavine
FT                   resistance protein B acrB or acrE or b0462 SW:ACRB_ECOLI
FT                   (P31224) (1049 aa) fasta scores: E(): 3.1e-201, 52.073% id
FT                   in 1037 aa and Neisseria gonorrhoeae rnd protein MtrD mtrD
FT                   TR:Q51073 (EMBL:U60099) (1067 aa) fasta scores: E():
FT                   3e-174, 51.873% id in 1068 aa"
FT                   /db_xref="GOA:Q7VWW1"
FT                   /db_xref="HSSP:1IWG"
FT                   /db_xref="InterPro:IPR000731"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWW1"
FT                   /protein_id="CAE42354.1"
FT                   /translation="MPQFFIDRPIFAWVVALFILLTGILAIPNMPVSQYPDVAPPAITI
FT                   TATYPGASAKEVAESVTSIIEDQLNGAKGLLYYESVSDSYGQSQITATFAPGTDPDLAQ
FT                   VDVQNRVSNVTAQLPVAVMQQGLQYEQTSAGFLMIVTLSSTDGTLDQTALADYITRNVK
FT                   NPVSRVPGVGQFQLFAAPRAMRIWVDPDKLVGFNLSMAEVNQAISQQNVLISAGSIGAP
FT                   PNPDSQRATATVIVNGQLSTIEGFGQIVLRANTDGSKVLLRDVARIEVGADNYQFGARL
FT                   NGKPTAAFAIVLSPDANALATAEGVRQQMASLSQYFPSNIRYDIPYDTAPYVKVSIEQV
FT                   IHTLVEAMVLVFLVMFLFLQNVRYTLIPALVVPVAMLGAFVVMLALGFSINVLTMFAMV
FT                   LAIGILVDDAIVVVENVERIMASEGLSPKEATKKAMPQISGAIVGITLVLVTVFLPLAF
FT                   MTGSVGVIYRQFSVAMAVSIFFSAFLALSFTPALCATILKPIPKGHHQEKKGFFGWFNR
FT                   KFDATTHNYQNWVSRILHKGGRMMLAFALLVVLLGWLYMRLPSSFLPEEDQGYVVSNIE
FT                   LPTGASANRTIEVIEEVENYFRNIPAVENVITVQGYSFNGNGLNAAIAFTTLKDFSERK
FT                   SRADSAGAIAFTAFSKQLMGIHDAQVFTLVPPAISSLGNASGFDFRLQDRGGAGTEALG
FT                   AATAELMGMAAKSPVLSQVRITGLGPGSQLSLTIDRDKAAALGVNFDEAATLISTAVGS
FT                   AFLNKFPNMGRMQNIWVQADQQYRMQVEDLLKLNARNNQGGMVPLSTFVSAKWVQGPVQ
FT                   VVRYNSYESVRIGGDAAAGYTTGEAMQEMQDLVARLPQGFGYEWNGLSYQERLAGNQAP
FT                   ILMGLALLVVFLVLAALYESWAIPLSVMLVVPLGMLGAVALVTVLGMSNDVYFQVGMVT
FT                   VIGLAAKNAILIVEFAKDQYARGQGLYESAVEAARLRFRPILMTSLAFILGVVPLAIAT
FT                   GAGAASQRAVGIGVLGGMLAATPFAVIFVPTFFVVVLGLFKTRPRLLGAELRAFEEEQA
FT                   AKRAAEQQQPQDGAATPAPQTGGQENKE"
FT   misc_feature    111951..115028
FT                   /note="HMMPfam hit to PF00873, AcrB/AcrD/AcrF family"
FT   misc_feature    join(111975..112034,112968..113027,113046..113114,
FT                   113124..113192,113262..113330,113373..113441,
FT                   113559..113618,114558..114617,114636..114704,
FT                   114717..114785,114846..114914,114957..115025)
FT                   /note="12 probable transmembrane helices predicted for
FT                   BP2076 by TMHMM2.0 at aa 9-28, 340-359, 366-388, 392-414,
FT                   438-460, 475-497, 537-556, 870-889, 896-918, 923-945,
FT                   966-988 and 1003-1025"
FT   CDS             join(115181..115978,115977..116675)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2077"
FT                   /product="putative efflux system outer membrane component
FT                   (Pseudogene)"
FT                   /note="Pseudogene. This CDS appears to have a frameshift
FT                   mutation following codon 266. The frameshift occurs within
FT                   a polymeric tract of (GC)4. The sequence has been checked
FT                   and believed to be correct. Similar to e.g. Pseudomonas
FT                   aeruginosa outer membrane protein OprM precursor OprM or
FT                   OprK or PA0427 SW:OPRM_PSEAE (Q51487) (485 aa) fasta
FT                   scores: E(): 1.4e-74, 52.227% id in 494 aa"
FT                   /db_xref="PSEUDO:CAE42355.1"
FT   misc_feature    join(115433..115978,115977..116042)
FT                   /note="HMMPfam hit to PF02321, Outer membrane efflux
FT                   protein"
FT   variation       115970..115977
FT                   /note="(GC)4 in pertussis; (GC)5 in parapertussis and
FT                   bronchiseptica"
FT   misc_feature    116079..116670
FT                   /note="This hit extended beyond the end of the feature by 0
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF02321, Outer membrane efflux
FT                   protein"
FT   CDS             116672..117418
FT                   /transl_table=11
FT                   /gene="pdxJ"
FT                   /locus_tag="BP2078"
FT                   /product="pyridoxal phosphate biosynthetic protein"
FT                   /note="Similar to many e.g. Escherichia coli pyridoxal
FT                   phosphate biosynthetic protein PdxJ pdxJ or b2564
FT                   SW:PDXJ_ECOLI (P24223) (242 aa) fasta scores: E(): 6.5e-47,
FT                   62.025% id in 237 aa"
FT                   /db_xref="GOA:Q7VWW0"
FT                   /db_xref="HSSP:1HO1"
FT                   /db_xref="InterPro:IPR004569"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VWW0"
FT                   /protein_id="CAE42356.1"
FT                   /translation="MIELGVNIDHVATLRQQRHTAYPDPVQAALRAEDAGADLITLHLR
FT                   EDRRHIQDADVYAIRPLLRTRMNLECAVTPEMLEIACAVKPSDVCLVPEKRTELTTEGG
FT                   LDVAGAQAAVTDAVQLLAEAGIRVSLFIDPDARQIEAAARAGAPVIELHTGAYAEARDD
FT                   AAVQAELARVRAAVAEGLRHGLRVNAGHGLHYGNVQAVAALDGIAELNIGHAIVAQSIF
FT                   DGWDKAVRDMKALMVQARLAAVRGHA"
FT   CDS             117503..117964
FT                   /transl_table=11
FT                   /gene="acpS"
FT                   /locus_tag="BP2079"
FT                   /product="putative holo-[acyl-carrier protein] synthase"
FT                   /EC_number="2.7.8.7"
FT                   /note="Similar to e.g. Escherichia coli holo-[acyl-carrier
FT                   protein] synthase acpS or b2563 SW:ACPS_ECOLI (P24224) (125
FT                   aa) fasta scores: E(): 1e-10, 39.535% id in 129 aa. Carries
FT                   a predicted N-terminal extension of 16 amino acids not
FT                   present in homologs"
FT                   /db_xref="GOA:Q7VWV9"
FT                   /db_xref="HSSP:1FTH"
FT                   /db_xref="InterPro:IPR004568"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VWV9"
FT                   /protein_id="CAE42357.1"
FT                   /translation="MSSVSAAGATPPASPGCIAGIGMDLLRIERIERALARHGDRFAQK
FT                   ILGPKELAKFQARRRRDPARGVRFLATRFAAKEAFSKAIGLGMRMPMSWRRVQTLNAPG
FT                   GRPVLVIGAELADWFDARFGAAHVSITDESDMAAAYVIVERKPAPDGRP"
FT   misc_feature    117560..117922
FT                   /note="HMMPfam hit to PF01648, 4'-phosphopantetheinyl
FT                   transferase superfamily"
FT   CDS             118002..119060
FT                   /transl_table=11
FT                   /gene="nagZ"
FT                   /locus_tag="BP2080"
FT                   /product="putative beta-hexosaminidase"
FT                   /EC_number="3.2.1.52"
FT                   /note="Similar to e.g. Escherichia coli beta-hexosaminidase
FT                   NagZ nagZ or b1107 SW:NAGZ_ECOLI (P75949) (341 aa) fasta
FT                   scores: E(): 5e-48, 47.097% id in 310 aa and Vibrio
FT                   furnissii beta-hexosaminidase nagz or exo iI SW:NAGZ_VIBFU
FT                   (P96157) (329 aa) fasta scores: E(): 4.2e-32, 45.133% id in
FT                   339 aa"
FT                   /db_xref="GOA:Q7VWV8"
FT                   /db_xref="InterPro:IPR001764"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VWV8"
FT                   /protein_id="CAE42358.1"
FT                   /translation="MSSKKKTKPVLPPGPVMVDVAGTTLTKDEKRRLRNPLVGGVILFA
FT                   RNFTDRRQLCALTRAIHKARKEPLLIAVDHEGGRVQRFRDDGFTALPPMQELGKLWDRD
FT                   PLAAMRLATEAGYVLAAELRACGVDLSFTPVLDLDYGVSKVIGNRAFHHDARVVTMLSR
FT                   ALTQGLALAGMAACGKHFPGHGFVGADSHHEIPVDPRPLARILKDDAAPYAWLGDLVMP
FT                   AVMPAHVIYPKVDAQPAGFSRRWVSEILRERLGYDGVVFSDDLTMEGASVAGDILARAE
FT                   AALGAGCDMVLVCRPDLADELLDRLQVQHPAASVERIRRLLPRFAAPDWDTLQNDSRYQ
FT                   HARRLQSQIVSG"
FT   misc_feature    118062..118931
FT                   /note="HMMPfam hit to PF00933, Glycosyl hydrolase family 3
FT                   N terminal domain"
FT   CDS             119023..120852
FT                   /transl_table=11
FT                   /gene="uvrC"
FT                   /locus_tag="BP2081"
FT                   /product="putative excinuclease ABC subunit C"
FT                   /note="Similar to many e.g. Escherichia coli excinuclease
FT                   ABC subunit C uvrC or b1913 SW:UVRC_ECOLI (P07028) (610 aa)
FT                   fasta scores: E(): 1.5e-105, 47.812% id in 617 aa"
FT                   /db_xref="GOA:Q7VWV7"
FT                   /db_xref="InterPro:IPR000305"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VWV7"
FT                   /protein_id="CAE42359.1"
FT                   /translation="MPDDFNLKSFLADLPHLPGVYRHLDAAGEAMYVGKARDLKKRVSS
FT                   YFQKNLASPRIAQMVAKVASVDVTVTRSEAEALLLENNLIKSLRPRYNILFRDDKSYPY
FT                   LLITGHAWPRIAYYRGATSKRGQYFGPYPNSWAVRETIQILQKVFRLRTCEDTVFANRS
FT                   RPCLLHQIGRCSAPCVGVIEAEDYAHDVQRAVRFLNGEAREVMDEIEARMLQASTELRF
FT                   EEAAVLRDQMGSLSKVLHQQTMENVGGDDTDVIAVASAGGKICVNLAMVRGGRHLGDKP
FT                   FFPTHAEGEQPAQVLEAFVAQHYADGAMPPVLVCSHALPDSGLVGLLAEQGGTRVARVL
FT                   TRPQGVRRSWLEQAQKNAEMALARALTESGARAGRTLALAEALDLDTDEESLDALRIEC
FT                   FDISHTAGEATQASCVVFLHHDMQPSLYRRYNIVGITPGDDYAAMRQVLTRRFGKVTDG
FT                   EAPMPGLVLIDGGKGQVEVARQVFVELGLDIQSLVGVAKGEGRKVGLETLVFADGRPPV
FT                   ALGKESAALMLIAQVRDEAHRFAITGMRARRAKTRNVSRLEEIEGIGARRRQRLLARFG
FT                   GLSGVSSASIEDLASVEGISQELAVRIYDALHG"
FT   misc_feature    119083..119340
FT                   /note="HMMPfam hit to PF01541, Endo/excinuclease amino
FT                   terminal domain"
FT   misc_feature    119629..119736
FT                   /note="HMMPfam hit to PF02151, UvrB/uvrC motif"
FT   misc_feature    120751..120840
FT                   /note="HMMPfam hit to PF00633, Helix-hairpin-helix motif."
FT   CDS             120892..121464
FT                   /transl_table=11
FT                   /gene="pgsA"
FT                   /locus_tag="BP2082"
FT                   /product="putative CDP-diacylglycerol--glycerol-3-phosphate
FT                   3-phosphatidyltransferase"
FT                   /EC_number="2.7.8.5"
FT                   /note="Similar to many e.g. Escherichia coli
FT                   CDP-diacylglycerol--glycerol-3-phosphate
FT                   3-phosphatidyltransferase pgsA or b1912 SW:PGSA_ECOLI
FT                   (P06978) (181 aa) fasta scores: E(): 7.1e-27, 50.276% id in
FT                   181 aa"
FT                   /db_xref="GOA:Q7VWV6"
FT                   /db_xref="InterPro:IPR004570"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWV6"
FT                   /protein_id="CAE42360.1"
FT                   /translation="MPINVPIFLTWLRIAMIPLVVGLFYLPESWMSVPMRDTFAAWAFI
FT                   IAALTDWFDGWLARRWNQTSAFGAFLDPVADKLMVCAALIVLLDLSRVDAFISLIIIGR
FT                   EITISALREWMAKIGASASVAVHRLGKFKTAAQMVAIPCLLYDQPLFGLSSRLIGDVLI
FT                   VVAAVLTVWSMLYYLQRAWPAIREKSQ"
FT   misc_feature    join(120910..120969,121006..121065,121084..121152,
FT                   121357..121425)
FT                   /note="4 probable transmembrane helices predicted for
FT                   BP2082 by TMHMM2.0 at aa 7-26, 39-58, 65-87 and 156-178"
FT   misc_feature    121012..121443
FT                   /note="HMMPfam hit to PF01066, CDP-alcohol
FT                   phosphatidyltransferase"
FT   misc_feature    121051..121119
FT                   /note="ScanRegExp hit to PS00379, CDP-alcohol
FT                   phosphatidyltransferases signature. Confirmed by InterPro
FT                   eMOTIF pattern match."
FT   CDS             join(121628..122599,122603..122878,122880..122882)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2083"
FT                   /product="putative transmembrane transport protein
FT                   (pseudogene)"
FT                   /note="Pseudogene. This CDS appears to have an in-frame
FT                   stop codon and a frameshift mutation following codon 416.
FT                   The sequence has been checked and believed to be correct.
FT                   Similar to many e.g. Escherichia coli fosmidomycin
FT                   resistance protein fsr or b0479 SW:FSR_ECOLI (P52067) (406
FT                   aa) fasta scores: E(): 3.7e-10, 28.158% id in 380 aa"
FT                   /db_xref="PSEUDO:CAE42361.1"
FT   misc_feature    122240..122263
FT                   /note="ScanRegExp hit to PS00687, Aldehyde dehydrogenases
FT                   glutamic acid active site."
FT   variation       122600..122602
FT                   /note="TGA stop in pertussis; TGG in parapertussis and
FT                   bronchiseptica"
FT   variation       122878
FT                   /note="(G) in pertussis; (-) in parapertussis and
FT                   bronchiseptica"
FT   CDS             complement(122889..123710)
FT                   /transl_table=11
FT                   /locus_tag="BP2084"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to many hypothetical proteins e.g.
FT                   Pseudomonas aeruginosa hypothetical protein PA2806
FT                   TR:Q9I037 (EMBL:AE004707) (276 aa) fasta scores: E():
FT                   1e-57, 58.303% id in 271 aa"
FT                   /db_xref="GOA:Q7VWV5"
FT                   /db_xref="InterPro:IPR001474"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VWV5"
FT                   /protein_id="CAE42362.1"
FT                   /translation="MSLSNAPLGQHVAYPSQYDPGLLFPIPRATNRASLQLGAALPFTG
FT                   VDLWNAYELSWLDARGKPRVAMATFSFPADSPNIVESKSFKLYLNSFNQTRLPNAQALR
FT                   DRLERDLAAAAGAPVGLEFISPQRFGELNMAELDGIYIDKLDIEIDTYEPAPQLLQCAP
FT                   GDEVEETLATRLLKSNCPVTGQPDWASLQVRYRGRPIDRAALLKYVVSFRQHAEFHEHC
FT                   VERIFGDIMRACQPRQLTVYARYTRRGGLDINPWRSNFESAPPADVRTARQ"
FT   CDS             124029..125351
FT                   /transl_table=11
FT                   /gene="aceA"
FT                   /locus_tag="BP2085"
FT                   /product="putative isocitrate lyase"
FT                   /EC_number="4.1.3.1"
FT                   /note="Similar to many e.g. Escherichia coli isocitrate
FT                   lyase aceA or b4015 SW:ACEA_ECOLI (P05313) (434 aa) fasta
FT                   scores: E(): 9.8e-123, 70.805% id in 435 aa"
FT                   /db_xref="GOA:Q7VWV4"
FT                   /db_xref="HSSP:1IGW"
FT                   /db_xref="InterPro:IPR018523"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWV4"
FT                   /protein_id="CAE42363.1"
FT                   /translation="MSNRETEIRNLQKDWAENTRWQGIKRAYSAEDVIRLRGSVAVEHS
FT                   LARRGATRLWDSLHSEPFVNSLGALTGNQAMQQVKAGLKAIYLSGWQVAGDANLAGEMY
FT                   PDQSLYPANSVPQVVRRINNALARCDQIQWMEGKNPGDQDYIDYYAPIVADAEAGFGGV
FT                   LNAFELMKAMIEAGAAGVHFEDQLASVKKCGHMGGKVLVPTREAVSKLVSARLVADVMG
FT                   TPTILLARTDADAADLVTSDVDENDRPFITGERTVEGFFRTRAGLDQAISRGLAYAPYA
FT                   DLIWCETSTPNLEYARKFAEAVHRQFPGKLLAYNCSPSFNWKKNLDDGTIAKFQRELGA
FT                   MGYKFQFITLAGFHALNYGMFELAHGYARRQMSAFVELQQKEFAAAELGFTAVKHQREV
FT                   GTGYFDAVTQTIEGGQSSTTALTGSTEEVQFEQGGQAVKAA"
FT   misc_feature    124047..124790
FT                   /note="HMMPfam hit to PF00463, Isocitrate lyase family"
FT   misc_feature    124599..124616
FT                   /note="ScanRegExp hit to PS00161, Isocitrate lyase
FT                   signature."
FT   misc_feature    124791..125318
FT                   /note="HMMPfam hit to PF00463, Isocitrate lyase family"
FT   CDS             125711..126346
FT                   /transl_table=11
FT                   /locus_tag="BP2086"
FT                   /product="putative membrane protein"
FT                   /note="Unknown function. C-terminus has been interrupted by
FT                   an insertion element"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWV3"
FT                   /protein_id="CAE42364.1"
FT                   /translation="MACFMALVLARFGFGFCMLLAALMLLVAATLLATRLVGWAVRAFA
FT                   LERSQALASGVAIFLLVALALWGCHAVGEILYGAIGATALVGGAPHWLAGNSHVSAAAL
FT                   MGATTAAAMLAGGPAFWRWLRARRAAAAEQPAPRKAAPPKGAKPAARAAKAAAKTQIAP
FT                   RGQRIPWLGWTAFFLLFIGAAVLAFAYIVSPIEAGARCELSIGCIRPG"
FT   misc_feature    125711..125794
FT                   /note="Signal peptide predicted for BP2086 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.987) with cleavage site
FT                   probability 0.298 between residues 28 and 29"
FT   misc_feature    join(125744..125812,125855..125914,125933..125992,
FT                   126005..126073,126218..126286)
FT                   /note="5 probable transmembrane helices predicted for
FT                   BP2086 by TMHMM2.0 at aa 12-34, 49-68, 75-94, 99-121 and
FT                   170-192"
FT   CDS             complement(126306..127256)
FT                   /transl_table=11
FT                   /locus_tag="BP2087"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTA1"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTA1"
FT                   /protein_id="CAE42365.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWQRPHQGIGRAVPISRLNLDEYNLLTVHT"
FT   repeat_region   126306..126337
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   complement(126306..127358)
FT   misc_feature    complement(126342..126875)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   misc_feature    complement(126933..126998)
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   repeat_region   complement(127327..127358)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(127338..128123)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2088"
FT                   /product="putative ABC-transporter permease component
FT                   (pseudogene)"
FT                   /note="Pseudogene. This CDS is disrupted by the insertion
FT                   of IS481. The C-terminal region of this CDS is BP1648.
FT                   Similar to many putative ABC-transporter permease
FT                   components and to Pseudomonas aeruginosa high-affinity
FT                   branched-chain amino acid transport system permease protein
FT                   BraE braE or PA1072 SW:BRAE_PSEAE (P21628) (417 aa) fasta
FT                   scores: E(): 2e-10, 28.044% id in 271 aa"
FT                   /db_xref="PSEUDO:CAE42366.1"
FT   misc_feature    complement(127341..128051)
FT                   /note="HMMPfam hit to PF02653, Branched-chain amino acid
FT                   transport system / permease component"
FT   misc_feature    complement(join(127575..127640,127737..127802,
FT                   127824..127889,127950..128015,128037..128093))
FT                   /note="5 probable transmembrane helices predicted for
FT                   BP2088 by TMHMM2.0 at aa 10-29, 36-58, 78-100, 107-129 and
FT                   161-183"
FT   misc_feature    complement(127998..128123)
FT                   /note="Signal peptide predicted for BP2088 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.999) with cleavage site
FT                   probability 0.795 between residues 42 and 43"
FT   CDS             complement(128127..128999)
FT                   /transl_table=11
FT                   /locus_tag="BP2089"
FT                   /product="putative ABC-transporter permease component"
FT                   /note="Similar to many putative ABC-transporter permease
FT                   components e.g. Streptomyces coelicolor putative branched
FT                   amino acid transport system permease SC8A11.11 TR:Q9FBZ9
FT                   (EMBL:AL391041) (290 aa) fasta scores: E(): 2.5e-39,
FT                   46.735% id in 291 aa. Also similar to Salmonella
FT                   typhimurium high-affinity branched-chain amino acid
FT                   transport system permease protein LivH livH or livA
FT                   SW:LIVH_SALTY (P30295) (308 aa) fasta scores: E(): 3.2e-17,
FT                   32.566% id in 304 aa"
FT                   /db_xref="GOA:Q7VWV2"
FT                   /db_xref="InterPro:IPR001851"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWV2"
FT                   /protein_id="CAE42367.1"
FT                   /translation="MSEFMQFIFSGVTVGAVYALVALGFAIIFNATGVVNFAQGEFVML
FT                   GGMITVFAHGAGLALPLAALLAIAVTAATGVALNRLAIEPARGAPVVSLIIITIGASIF
FT                   IRGAVQSLFGKQIHSLPAFSGDDPIHVLGATILSQSLWMIGGAVAVFIVLWLFFTRTLI
FT                   GRAVLATSNNRLAARLVGINTRFIMTLSFALSAAIGALAGVLITPITLTSYDVDLTLAL
FT                   KGFAAAMLGGMGSPKGALAGGILLGLLESLTAGYLSSQYKDAAAFLTILAVLFFMPQGL
FT                   FGHKSTDRV"
FT   misc_feature    complement(128142..128990)
FT                   /note="HMMPfam hit to PF02653, Branched-chain amino acid
FT                   transport system / permease component"
FT   misc_feature    complement(join(128151..128207,128229..128285,
FT                   128364..128429,128526..128591,128661..128726,
FT                   128766..128831,128913..128978))
FT                   /note="7 probable transmembrane helices predicted for
FT                   BP2089 by TMHMM2.0 at aa 9-31, 58-80, 93-115, 138-160,
FT                   192-214, 240-259 and 266-285"
FT   RBS             complement(129003..129008)
FT                   /note="possible RBS"
FT   CDS             complement(129077..130216)
FT                   /transl_table=11
FT                   /locus_tag="BP2090"
FT                   /product="putative ABC-transporter substrate-binding
FT                   protein"
FT                   /note="Similar to many ABC-transporter substrate-binding
FT                   proteins e.g. Pseudomonas aeruginosa leucine-, isoleucine-,
FT                   valine-, threonine-, and alanine-binding protein precursor
FT                   braC or PA1074 SW:BRAC_PSEAE (P21175) (373 aa) fasta
FT                   scores: E(): 2.2e-09, 25.360% id in 347 aa"
FT                   /db_xref="InterPro:IPR001828"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWV1"
FT                   /protein_id="CAE42368.1"
FT                   /translation="MNTSKAIVAGLLALGCALPAAAEIRLGASVSATGPAGILGDPEAR
FT                   TLELLVQELNARGGVKGEKIKLVLYDDGGDANKARTFATRLVEDDEVQAIIGGTTTGTS
FT                   MSILSVAEEAKVPFISLAGAIDIIDPVKPYTFKTPHTDRMACQKVFADMRKNGWTKVAL
FT                   IGSTDGFGASMQAQCKAVAGQYGIELVGSETYEPKDADMTAQLTKIRGIPGVQAVLNPG
FT                   FGQSAAVLARNYRQLGMSLPFYASHGVASQGYIDLAGADVVEGFRLPGTALLVADLLPA
FT                   SDPQAAPSIAYKKAFEAKTGAPVGTFGGYAHDAFLILVDALNRADSTKPTAIRDAIEKT
FT                   SKLAGTTGVYTFSPTNHLGLDLSAFRVLEIRGGKWKVVD"
FT   misc_feature    complement(130151..130216)
FT                   /note="Signal peptide predicted for BP2090 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.953 between residues 22 and 23"
FT   misc_feature    complement(130169..130201)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   RBS             130562..130569
FT                   /note="possible RBS"
FT   CDS             130575..131831
FT                   /transl_table=11
FT                   /locus_tag="BP2091"
FT                   /product="putative dioxygenase hydroxylase component"
FT                   /note="Similar to many dioxygenase components e.g.
FT                   Pseudomonas putida large subunit of terminal dioxygenase
FT                   tdnA1 TR:P95531 (EMBL:D85415) (448 aa) fasta scores: E():
FT                   9.9e-42, 34.954% id in 432 aa, and Pseudomonas putida
FT                   toluate 1,2-dioxygenase alpha subunit xylX SW:XYLX_PSEPU
FT                   (P23099) (454 aa) fasta scores: E(): 1.1e-32, 31.720% id in
FT                   372 aa"
FT                   /db_xref="GOA:Q7VWV0"
FT                   /db_xref="HSSP:1EG9"
FT                   /db_xref="InterPro:IPR017941"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWV0"
FT                   /protein_id="CAE42369.1"
FT                   /translation="MSFIRNEIDYRALIEPTRINSRLYVDPEIFQEELDKIWHRTWVYV
FT                   GHVSEVPNKNDYVTKSIGTTPVLLLRDRDGEIRLLLNKCPHRGNQLCAYKEGNRSTFTC
FT                   PYHSWTFSNTGDLMGYALADGYEGASKAGVGLGKVARIGIYRGFVFGSFAETGPSLDEH
FT                   LGGAKAAIDQLCDNSPNGELDLRAGFLQHRAKANWKFMLENETDGYHPGFVHGSIFQVT
FT                   NSPIANLYGKDSTALTRDYGNGHTEFDLRPEWRRIDKPLYWFGSSVERMADYAVAMDQA
FT                   YGAERARQIMIDGSPHTMIFPNLFIAEIQIFVLQPVSVEETIQHVTAVQFKDAPDINRR
FT                   LRQQTMGSVGPAGLLLADDTEMYERNHRGAKIRDPEWLMLTRGLHRERKDENGYTVGHS
FT                   TDEVPQRGIWRHYFKLMQE"
FT   misc_feature    130758..130937
FT                   /note="HMMPfam hit to PF00355, Rieske [2Fe-2S] domain"
FT   misc_feature    130824..130895
FT                   /note="ScanRegExp hit to PS00570, Bacterial ring
FT                   hydroxylating dioxygenases alpha-subunit signature.
FT                   Confirmed by InterPro eMOTIF pattern match."
FT   misc_feature    131052..131828
FT                   /note="HMMPfam hit to PF00848, Ring hydroxylating alpha
FT                   subunit (catalytic domain)"
FT   CDS             131837..132364
FT                   /transl_table=11
FT                   /locus_tag="BP2092"
FT                   /product="putative dioxygenase component"
FT                   /note="Similar to many e.g. Pseudomonas putida p-cumate
FT                   dioxygenase small subunit cmtAc TR:Q51975 (EMBL:U24215)
FT                   (180 aa) fasta scores: E(): 3.1e-10, 27.647% id in 170 aa
FT                   and Pseudomonas putida toluate 1,2-dioxygenase beta subunit
FT                   xylY SW:XYLY_PSEPU (P23100) (162 aa) fasta scores: E():
FT                   1.7e-05, 33.696% id in 92 aa"
FT                   /db_xref="GOA:Q7VWU9"
FT                   /db_xref="InterPro:IPR000391"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWU9"
FT                   /protein_id="CAE42370.1"
FT                   /translation="MTARPETRPAADDLQALDELTLHHRVSQFLYHEARLQDTHDYQGW
FT                   ESLWEDDAIYWIPANGDDIDPEQKMSVIYDNRSRIRVRIEQLLTGRRHTQTPRSALARL
FT                   ISNIEIVDVAGQEVTALANVLIYEDNLRGETHWAARNEYRLRLVDGAFRLVRKKIALVN
FT                   SAKPIFTLSFLV"
FT   misc_feature    131930..132349
FT                   /note="HMMPfam hit to PF00866, Ring hydroxylating beta
FT                   subunit"
FT   CDS             132375..133187
FT                   /transl_table=11
FT                   /locus_tag="BP2093"
FT                   /product="enoyl-CoA hydratase/isomerase-like protein"
FT                   /note="Similar to many e.g. Streptomyces collinus
FT                   2-cyclohexenylcarbonyl CoA isomerase chcB TR:Q9L4S8
FT                   (EMBL:AF268489) (269 aa) fasta scores: E(): 9e-18, 34.100%
FT                   id in 261 aa and Rhodopseudomonas palustris
FT                   cyclohex-1-ene-1-carboxyl-CoA hydratase badK TR:O07453
FT                   (EMBL:U75363) (258 aa) fasta scores: E(): 1.5e-17, 34.340%
FT                   id in 265 aa"
FT                   /db_xref="GOA:Q7VWU8"
FT                   /db_xref="HSSP:1DCI"
FT                   /db_xref="InterPro:IPR001753"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWU8"
FT                   /protein_id="CAE42371.1"
FT                   /translation="MTTANPETWIGEGPVLLDYADHVARITLNRPDAANGMNIEFMKAF
FT                   HEAVMRCHREPDVRVVLLRGAGKHFCAGGDVREFASKGEGLGDFLREVTAWLQMAIGAL
FT                   IRLDAVVVAQVQGYAAGGGGLGLVCAADIVVAAQGARFLAGATRVGMAPDAGSSVILPH
FT                   LIGFRRAMEMMLSNRTVGADEALEMGLVNQVVADAELDESAARLAATYAAGAPLAQAAT
FT                   KRLLWNTLQVERALPEEARTVSTLSATADSREGLAAVIGKRQPVFRRH"
FT   misc_feature    132444..132962
FT                   /note="HMMPfam hit to PF00378, Enoyl-CoA
FT                   hydratase/isomerase family"
FT   CDS             133187..133909
FT                   /transl_table=11
FT                   /locus_tag="BP2094"
FT                   /product="putative 3-oxoacyl-CoA or-ACP reductase"
FT                   /note="Similar to many e.g. Zoogloea ramigera
FT                   acetoacetyl-CoA reductase phbB SW:PHBB_ZOORA (P23238) (241
FT                   aa) fasta scores: E(): 1.7e-24, 41.494% id in 241 aa and to
FT                   Vibrio cholerae 3-oxoacyl-[acyl-carrier protein] reductase
FT                   fabG or VC2021 SW:FABG_VIBCH (Q9KQH7) (244 aa) fasta
FT                   scores: E(): 2.4e-23, 41.176% id in 238 aa"
FT                   /db_xref="GOA:Q7VWU7"
FT                   /db_xref="HSSP:1Q7B"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWU7"
FT                   /protein_id="CAE42372.1"
FT                   /translation="MPRHALVTGGANGIGAATVAQLCRDGLRVTFCDRDAQAGASVAEA
FT                   TGARFVALDATDAEAVAGFCAGAAPFDILVNNVGADQHAFFSRTTPQDWRALLAVNLES
FT                   AFAFTLGVLPGMQAARFGRIVNVSSEAGRLGSRGGAVYAAAKAGLLGFTRSIARENARY
FT                   GVTANAVLPGPVDTPMLARAVDVAGAQMRADLEALTLLRRLGRPEEVAAAIAFLCSEAA
FT                   GFITGEALGVSGGMGCGA"
FT   misc_feature    133193..133720
FT                   /note="HMMPfam hit to PF00106, short chain dehydrogenase"
FT   misc_feature    133571..133657
FT                   /note="ScanRegExp hit to PS00061, Short-chain
FT                   dehydrogenases/reductases family signature."
FT   misc_feature    133790..133882
FT                   /note="HMMPfam hit to PF00678,"
FT   CDS             133931..134245
FT                   /transl_table=11
FT                   /locus_tag="BP2095"
FT                   /product="putative ferredoxin"
FT                   /note="Similar to many e.g. Caulobacter crescentus
FT                   ferredoxin, 2fe-2s fdxB or fdxP or CC3524 SW:FER2_CAUCR
FT                   (P37098) (106 aa) fasta scores: E(): 1.6e-17, 50.495% id in
FT                   101 aa"
FT                   /db_xref="GOA:Q7VWU6"
FT                   /db_xref="HSSP:1E9M"
FT                   /db_xref="InterPro:IPR018298"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWU6"
FT                   /protein_id="CAE42373.1"
FT                   /translation="MTTIIFIASNEARHIVQADDGLSLMECARRANVPGIAAECGGACT
FT                   CATCHVHVGQEWMQAVGEPGDMERDMLDFANDVRAESRLSCQITVAPALEGLTVRVAPQ
FT                   "
FT   misc_feature    133943..134206
FT                   /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster
FT                   binding domain"
FT   misc_feature    134048..134080
FT                   /note="ScanRegExp hit to PS00814, Adrenodoxin family,
FT                   iron-sulfur binding region signature."
FT   misc_feature    134066..134083
FT                   /note="ScanRegExp hit to PS00190, Cytochrome c family
FT                   heme-binding site signature."
FT   CDS             134263..135411
FT                   /transl_table=11
FT                   /locus_tag="BP2096"
FT                   /product="putative fatty-acyl-CoA racemase"
FT                   /note="Similar to many e.g. Rattus norvegicus
FT                   alpha-methylacyl-CoA racemase AMACR SW:AMAC_RAT (P70473)
FT                   (381 aa) fasta scores: E(): 8.3e-53, 44.416% id in 385 aa
FT                   and Streptomyces coelicolor putative racemase SC5F2A.13
FT                   TR:Q9X7N6 (EMBL:AL049587) (398 aa) fasta scores: E():
FT                   9.4e-68, 51.697% id in 383 aa"
FT                   /db_xref="GOA:Q7VWU5"
FT                   /db_xref="HSSP:1PQY"
FT                   /db_xref="InterPro:IPR003673"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWU5"
FT                   /protein_id="CAE42374.1"
FT                   /translation="MAPALQGLRIIEMVGLGPAPFAAMMLADHGADVVRVHAAHRKGDF
FT                   PLLDSRFDVLARGRRSLALDLRAPGASDLLLELVGAADGLIEGFRPGVMERMGLAPEEC
FT                   LRRQPRLVYGRMTGWGQQGPLARQAGHDLNYLGLTGALHAIGPADRPPSVPLNYVADFG
FT                   GGMLLAFGMLAALLAVRGGAPGQVVDAAMVDGAGLLAAMFWGFRAGGGWSDRREGNLLD
FT                   GGAYFYATYACVDGRFLAVACVERRFHDLLVERLGLDPAVYTHDRDPAQWPALRARLAA
FT                   LFATRPRDHWAALFEDSDACVTPVLDWREAAHHPHAAARAGYIDVEGVTQPAPAPRLSA
FT                   TPARQPAAAPAVGAHLVEVLHEWGLAPERVAGALDSGLIVQA"
FT   misc_feature    134446..135018
FT                   /note="HMMPfam hit to PF02515, CAIB/BAIF family"
FT   CDS             complement(135442..136317)
FT                   /transl_table=11
FT                   /locus_tag="BP2097"
FT                   /product="putative esterase"
FT                   /note="Similar to e.g. Streptomyces hygroscopicus
FT                   acetyl-hydrolase bah SW:BAH_STRHY (Q01109) (299 aa) fasta
FT                   scores: E(): 1.2e-24, 39.912% id in 228 aa and to
FT                   Bordetella pertussis hypothetical protein TR:O30449
FT                   (EMBL:AF006000) (324 aa) fasta scores: E(): 4.6e-27,
FT                   39.502% id in 281 aa"
FT                   /db_xref="GOA:Q7VWU4"
FT                   /db_xref="InterPro:IPR013094"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWU4"
FT                   /protein_id="CAE42375.1"
FT                   /translation="MTARDPLAAIRARLAEVTACWQAAESLAQIRASFADYLAEVGPRG
FT                   AAMARPRPQPLAPALAGAWIGQGARRALYCHGGGFQIGGIASHASLIARLAEAGQARIL
FT                   AVEYRLAPEHRYPAAIDDAFAAYQWLLANGGAPAAIIGDSAGGALALQTAQRARDAGLP
FT                   LPRSLVLLSPWLDLSMQGRSYVELAEQDIFSKPAQLRAMARSYLGHLGPPPASPLWDDL
FT                   SGLPPIVVHAGAHDITLDDSHTLAARVRAAGGQVQLQVFPGMCHHFQIYEALAEAQESI
FT                   DALGRHLRQD"
FT   CDS             complement(136314..137633)
FT                   /transl_table=11
FT                   /locus_tag="BP2098"
FT                   /product="putative acyl-CoA ligase"
FT                   /note="Similar to Azoarcus evansii aerobic
FT                   phenylacetate-CoA ligase paaK or pacD TR:Q9L9C1
FT                   (EMBL:AF176259) (440 aa) fasta scores: E(): 2.1e-39,
FT                   33.710% id in 442 aa and Escherichia coli phenylacetate-CoA
FT                   ligase paaK or b1398 SW:PAAK_ECOLI (P76085) (437 aa) fasta
FT                   scores: E(): 1.3e-35, 31.735% id in 438 aa"
FT                   /db_xref="GOA:Q7VWU3"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWU3"
FT                   /protein_id="CAE42376.1"
FT                   /translation="MLHPEIELLDRDGILKIQRERLARLGQRLQHSPQWREHFASVGMT
FT                   PGDLASPDAFEHLPFLQKADLRQQYPYPFLTVPLEDVERFVATSGTTGLPVMFGLTRRD
FT                   LHELLPSQTARLLAAAGVRRGARAYQGYGYGLWIGGLALDQGFKAMDCVNFPLGPGRGD
FT                   LAARWMRDHAYEVASMSPLWLMSLAQAARAQGINPKTDWALRTAILGGQSVSAEFRAQL
FT                   EAEMPEGFVSHNIYGTTEAGGPILAISTPYTHADDELHLINEDTVLTEILDPVTLKPVS
FT                   EGEVGEIVITTLTKEASPVIRWRTHDLVRLSSHPYDCPSGRRGMRKIGRIIGRSDDMIK
FT                   FKGVIVFPSQIEDVITGVAGVVKEAWQIYIDKECMTIGTMTVAIEASAQAGRPAEQLSN
FT                   EVGREIHARLGMKVCVECHPEGTLPRYEAKAVRVLHRPEA"
FT   CDS             complement(137706..138902)
FT                   /transl_table=11
FT                   /locus_tag="BP2099"
FT                   /product="putative thiolase"
FT                   /note="Similar to many putative thiolases e.g. Caulobacter
FT                   crescentus thiolase family protein CC1432 TR:Q9A8C2
FT                   (EMBL:AE005818) (400 aa) fasta scores: E(): 1.5e-111,
FT                   67.929% id in 396 aa"
FT                   /db_xref="GOA:Q7VWU2"
FT                   /db_xref="InterPro:IPR002155"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWU2"
FT                   /protein_id="CAE42377.1"
FT                   /translation="MATGIKDRVAILAMGCSRFGERWDVGQEELMVEAYAEALASAGIE
FT                   PRAIEAAWYSSHYDDIGAGKAGTPMAMALRLPDIGVTRVENFCAGGTEAFRGAVYAVAS
FT                   GAADIALALGVEKLKDTGFAGLPLASRGTLAPMYLLTHSNPGNFAQLARAYQARHGVAR
FT                   EDLKAAMAHTSMKSHANALHNPKAHLRKAISREQAAGAPLVADPIGLFDCCPVSDGAAC
FT                   AIVTTPEIARSLNRGPLVLVKAIQLATSNGWELQQSDWDGSYVHTTRVAARKAYAEAGI
FT                   DDPRAQLSLTELHDCFSITELVTLEDIGLAEPGTAWRGMLDGRFDADGALPCQIDGGRK
FT                   CFGHPVGASGLRMLYEAWLQLSGRAGARQLPAPSLALTHNLGGAPAQNVCSITILGAA"
FT   misc_feature    complement(137727..138887)
FT                   /note="HMMPfam hit to PF00108, Thiolase, N-terminal domain"
FT   CDS             complement(138913..140400)
FT                   /transl_table=11
FT                   /locus_tag="BP2100"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Caulobacter crescentus hypothetical
FT                   protein CC1431 TR:Q9A8C3 (EMBL:AE005818) (488 aa) fasta
FT                   scores: E(): 3e-65, 44.136% id in 469 aa"
FT                   /db_xref="GOA:Q7VWU1"
FT                   /db_xref="InterPro:IPR002878"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWU1"
FT                   /protein_id="CAE42378.1"
FT                   /translation="MDVLPGRPRARRRRRRRQSRANILAIGVHLPRLRLSRGAMANALG
FT                   WLSGGAGAGKGSRTLAYWDEDSVTMAVAAARHALARQAAPAIDALQFASTTPPFAEPQN
FT                   AAFVRAALRLPATTLTQDVHGTPRAGLLALHMALESGTRTLVAAADLPTALPGSTAEAR
FT                   AGDGGAAVLTGDEPGLLRYLGGASLSAPFTDRYRAAGHDYPQEWEERWLREAGYLELVH
FT                   DAIGRALQAASLRPEQVDHFVLPCPVPGVAAAVAAKAGLGQARLASALAENCGDTGAAH
FT                   AFVMLGRALEDAAPGQKVLVAQFGQGATALLFEADEAVAGLAAPVSPALRDGLAEDNYM
FT                   KLLAFRGRIAWDRGLRGRFLVNEALSTAWRNADALLDFVGGRCRETGQVQFPPTRLAAT
FT                   GGFHLDTQEPWPLADRGGRIATFTADLLAFSPCPPNCYGLVDIDGGGRVLMEFTDPQAS
FT                   QLEAGAAVAFALRIKDLDPQTGYRRYFWKALAAPTAD"
FT   CDS             complement(join(140641..142464,142467..142946))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2101"
FT                   /product="hypothetical protein (pseudogene)"
FT                   /note="Pseudogene. This CDS appears to have a frameshift
FT                   mutation following codon 160. The frameshift occurs within
FT                   a dimeric tract of (TG)2. The sequence has been checked and
FT                   believed to be correct. The N-terminal region of this CDS
FT                   is similar to Salmonella typhimurium hypothetical 18.7 kDa
FT                   protein spi4_J SWALL:O85319 (EMBL:AF060869) (172 aa) fasta
FT                   scores: E(): 4.3, 25.74% id in 167 aa"
FT                   /db_xref="PSEUDO:CAE42379.1"
FT   variation       complement(142465..142468)
FT                   /note="(TG)2 in pertussis; (TG)1 in parapertussis and
FT                   bronchiseptica"
FT   CDS             142995..143894
FT                   /transl_table=11
FT                   /locus_tag="BP2102"
FT                   /product="putative lysR-family transcriptional regulator"
FT                   /note="Similar to many e.g. Salmonella typhimurium OsmT
FT                   protein osmT TR:CAC44465 (EMBL:AJ313506) (308 aa) fasta
FT                   scores: E(): 1.1e-13, 28.777% id in 278 aa"
FT                   /db_xref="GOA:Q7VWU0"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWU0"
FT                   /protein_id="CAE42380.1"
FT                   /translation="MLSKRFPCVSCAPWSPSGDTASFTGAAEQLGMSQPSVSHLIRRLE
FT                   AEVGQTLVVRGREVTLTRQGQALADIARRAILSIDGAVRESRDQSALKSGSVSVAVGHV
FT                   SAATLLPRILVAFNQRHPNIELIVVDCVVEQIRNKLLSHEADVGLGAVVGSDDSRLSTE
FT                   LLWDGGVSLFMRDDHYLADREAIDAAILAELPCIQLNPNAPPWLVISRLLVANGIHPRV
FT                   DQRVVLVSTAVGMIQAGMGVAMLPHAAAAQAPRGVRAVPIRNPFLSWPISLVRLSNHPL
FT                   SPAAQAFAAIARDVLRRF"
FT   misc_feature    143088..143441
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family"
FT   CDS             143975..144997
FT                   /transl_table=11
FT                   /locus_tag="BP2103"
FT                   /product="putative exported protein"
FT                   /note="Similar to many hypothetical proteins e.g. Rhizobium
FT                   meliloti conserved hypothetical protein SMA1927 TR:AAK65716
FT                   (EMBL:AE007292) (330 aa) fasta scores: E(): 2.4e-41,
FT                   40.694% id in 317 aa"
FT                   /db_xref="GOA:Q7VWT9"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWT9"
FT                   /protein_id="CAE42381.1"
FT                   /translation="MQACHPIRRWRPTTNKGKCMKNVLWMALLASVLSEGALAAEFPTH
FT                   PVTLVVPLAAGSTADILARAIQPGLSKALGQTVVVENRPGAGGQLAMSYVAKQAADGYT
FT                   IVMGSNGTWAINLGLYEKLPYRPVEDFAPVAYLAGGSNILIVKPSSPYTSVAALIAAMK
FT                   AAPGKLTYSSGGNGTTHHLSSELLKSLTDTQAMHIPYGGAPQGVSAVMAGETDFGFYNT
FT                   PSVSSMVKERKLRALAATGTIRTPMLPEVPTMMEAGVAGYVMSVDFGLLAPAGTPDDVV
FT                   LKLNRAANAAMAQPKLQETLKNYGFEVFEQGSPGDMAKRVNADIDKWVPIVRQAKAKVD
FT                   "
FT   misc_feature    143975..144091
FT                   /note="Signal peptide predicted for BP2103 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.998) with cleavage site
FT                   probability 0.996 between residues 39 and 40"
FT   repeat_region   144994..145025
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   144994..146046
FT   CDS             145096..146046
FT                   /transl_table=11
FT                   /locus_tag="BP2104"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTB4"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTB4"
FT                   /protein_id="CAE42382.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI"
FT   misc_feature    145354..145419
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   misc_feature    145477..146010
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   repeat_region   complement(146015..146046)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   146166..146197
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   146166..147218
FT   CDS             146268..147218
FT                   /transl_table=11
FT                   /locus_tag="BP2105"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7VWT8"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWT8"
FT                   /protein_id="CAE42383.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVSEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT"
FT   misc_feature    146526..146591
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   misc_feature    146649..147182
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   repeat_region   complement(147187..147218)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(147215..147517)
FT                   /transl_table=11
FT                   /locus_tag="BP2106"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to hypothetical proteins e.g. Pseudomonas
FT                   aeruginosa hypothetical protein PA3338 TR:Q9HYQ7
FT                   (EMBL:AE004756) (96 aa) fasta scores: E(): 3.1e-25, 70.213%
FT                   id in 94 aa and Rhizobium loti hypothetical protein Mll3944
FT                   TR:Q98F45 (EMBL:AP003003) (115 aa) fasta scores: E():
FT                   3.6e-23, 72.414% id in 87 aa"
FT                   /db_xref="GOA:Q7VWT7"
FT                   /db_xref="InterPro:IPR007843"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWT7"
FT                   /protein_id="CAE42384.1"
FT                   /translation="MITPPDHPPRIAIQYCTQCQWLLRAAWMAQELLSTFGADLGEVAL
FT                   VPGTGGVFRIHYNGAPLWDREVDGGFPEAKVLKQRVRDHLDPGRPLGHIDGRPKP"
FT   CDS             147677..148081
FT                   /transl_table=11
FT                   /locus_tag="BP2107"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to hypothetical proteins e.g. Caulobacter
FT                   crescentus hypothetical protein CC3056 TR:Q9A3Z4
FT                   (EMBL:AE005969) (137 aa) fasta scores: E(): 6.6e-14,
FT                   43.590% id in 117 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWT6"
FT                   /protein_id="CAE42385.1"
FT                   /translation="MGAPDLCTEEDITQLVHQFYAEVRRDAELGPIFNTHVDDWDVHLA
FT                   KLVDFWSSILRGTGRFRGTPMPRHVALPGLHAGLFERWLRLFRATAAAQPNQAMAEQAC
FT                   LMAGRIAQSLWYGYQLHRSPDQAPTDLAHG"
FT   CDS             148074..149300
FT                   /transl_table=11
FT                   /locus_tag="BP2108"
FT                   /product="putative membrane protein"
FT                   /note="Similar to hypothetical proteins e.g. Pseudomonas
FT                   aeruginosa hypothetical protein PA2662 TR:Q9I0H6
FT                   (EMBL:AE004695) (397 aa) fasta scores: E(): 7.8e-34,
FT                   39.747% id in 395 aa"
FT                   /db_xref="InterPro:IPR010266"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWT5"
FT                   /protein_id="CAE42386.1"
FT                   /translation="MAELLQIDEPAAARAAPQWRAFLELGFRPLYLVGAAWGALSVALW
FT                   IGAPQWLGGAMAGVIWHAHEMLWGFIGAIAVGFLLTAAATWTGVNPLRGAPLAALAALW
FT                   LAARAAFLLPGMAAFWTGVACELLFFAWAAAALGRAIYRRGASRRNDGVPLLVLGLGAA
FT                   DALYLLAARAGDYPLLLQRFNAGLLCMAVIALLIARRIIPFFAMRAIAGLQIPMHTRSG
FT                   QWQLAAGLVAVAATLAQAGALTAVALAAAGLIALAQWLSWRPWATRGVPLLWILYAGYL
FT                   GLAAGLLVAAASAAGGIARAAWPAHVIGMAGFGLLIIGIITRTALGHLGRPLRTDRLML
FT                   ACYLLVIGAAALRLAALWPGPHTLAALHGATAAWVLAFVLYLWRFAPLLVRPRLRAPTA
FT                   AATPVRSRP"
FT   misc_feature    join(148167..148235,148272..148340,148398..148466,
FT                   148527..148595,148623..148691,148749..148844,
FT                   148887..148955,148974..149042,149085..149144,
FT                   149163..149231)
FT                   /note="10 probable transmembrane helices predicted for
FT                   BP2108 by TMHMM2.0 at aa 32-54, 67-89, 109-131, 152-174,
FT                   184-206, 226-257, 272-294, 301-323, 338-357 and 364-386"
FT   CDS             149297..149743
FT                   /transl_table=11
FT                   /locus_tag="BP2109"
FT                   /product="putative membrane protein"
FT                   /note="Similar to hypothetical proteins e.g. Neisseria
FT                   meningitidis hypothetical protein NMB0013 TR:Q9K1Q7
FT                   (EMBL:AE002359) (149 aa) fasta scores: E(): 2.4e-16,
FT                   44.444% id in 144 aa and Helicobacter pylori J99
FT                   hypothetical protein JHP1395 TR:Q9ZJB8 (EMBL:AE001561) (145
FT                   aa) fasta scores: E(): 9.7e-09, 33.333% id in 144 aa"
FT                   /db_xref="InterPro:IPR007418"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWT4"
FT                   /protein_id="CAE42387.1"
FT                   /translation="MTYPILLALHLLAAFVFIGTVFFEVLILESVRRQVPREAMNAVER
FT                   GIGNRARAIMPWVLLALFGAGIGMAWQHRGALEQPLASSFGLLLSLKIVLALSVLGHFA
FT                   AAMRWRRRGQLRGRRSRRLHLSVFCHVVAIVLLAKGMYYIDALR"
FT   misc_feature    join(149312..149380,149441..149509,149537..149605,
FT                   149663..149731)
FT                   /note="4 probable transmembrane helices predicted for
FT                   BP2109 by TMHMM2.0 at aa 6-28, 49-71, 81-103 and 123-145"
FT   CDS             149813..150595
FT                   /transl_table=11
FT                   /locus_tag="BP2110"
FT                   /product="putative exodeoxyribonuclease III"
FT                   /EC_number="3.1.11.2"
FT                   /note="Similar to many e.g. Escherichia coli
FT                   exodeoxyribonuclease III xthA or b1749 SW:EX3_ECOLI
FT                   (P09030) (268 aa) fasta scores: E(): 1.2e-18, 36.842% id in
FT                   266 aa and Neisseria meningitidis putative
FT                   exodeoxyribonuclease III NMA2086 TR:Q9JSY0 (EMBL:AL162758)
FT                   (256 aa) fasta scores: E(): 2.4e-47, 50.382% id in 262 aa.
FT                   It should be noted that at least one protein in this
FT                   family, Pseudomonas aeruginosa crc or PA5332, TR:Q51380
FT                   (EMBL:U38241), appears to have no exonuclease activity and
FT                   is unable to complement DNA-repair deficient E. coli"
FT                   /db_xref="GOA:Q7VWT3"
FT                   /db_xref="HSSP:1AKO"
FT                   /db_xref="InterPro:IPR005135"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWT3"
FT                   /protein_id="CAE42388.1"
FT                   /translation="MKLATWNVNSLNVRLPQVLDWLAANPVDALCIQELKLTDDKFPLD
FT                   AFTEAGYHAAWAGQKTYNGVAIISREPGFALVRNNPRYEDPQQRILAVTLPSPAGDVRV
FT                   ICAYCPNGQSVDSDKYVYKLAWFDGLRDWLEEEMRTYPRLAILGDYNVAPADADVHNPE
FT                   KWEGQVLVSEPERAAFRALLDLGLTDSFRLFEQPEKSFSWWDYRQFAFRRNAGLRIDHV
FT                   LLSDALKPHCVACVIDKAPRANEQPSDHAPVIATLAFD"
FT   misc_feature    149813..150586
FT                   /note="HMMPfam hit to PF01260, AP endonuclease family 1"
FT   misc_feature    150452..150487
FT                   /note="ScanRegExp hit to PS00728, AP endonucleases family 1
FT                   signature 3."
FT   CDS             150637..152142
FT                   /transl_table=11
FT                   /locus_tag="BP2111"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to many hypothetical proteins from Rhizobium
FT                   spp. e.g. Rhizobium loti hypothetical protein MLR6294
FT                   TR:Q989S9 (EMBL:AP003008) (525 aa) fasta scores: E():
FT                   2.4e-71, 44.177% id in 498 aa"
FT                   /db_xref="InterPro:IPR010799"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWT2"
FT                   /protein_id="CAE42389.1"
FT                   /translation="MHILVAGFQHETNTFAPSKAGYDNFLRGEGFPALVRGDDLLALRA
FT                   VNIPAGGFLNAALADGHSVHPVLWAGASPSAHVTRDAFERIAGEIEAAARAGRYDAVYL
FT                   DLHGAMVTEHHDDGEGELLRRLRDAVGPATPIVASLDLHANVTRAMLAHASALVAYRTY
FT                   PHVDMADTGARAAALLQARAQAGKHWHGAARRLPFLIPINGMCTQLEPARGVYALLAEL
FT                   ERSEPGIASLSCALGFPAADFPECGPVVWAHGPDRDAVERAVQTLADRIAGLEAQWAPD
FT                   FLAPDEAIRQARQLAQGARRPVVIADTQDNPGAGGDANTTGMLRALIDADADNAAIGLM
FT                   CDPQAVAQALAAGVGKCVRLRLGGQSGVAGDAPCEAEFIVEHQSDGKTRYDGPMMHGMA
FT                   ADLGPTVCLRHRGVRVIVSSNKSQTLDRNLIRLGGIDPEDLAILVVKSSVHFRADFEPI
FT                   AHAVLIAKAPGPMQADPADLPWTRLAPGMRTRPRGRPFVPARP"
FT   tRNA            152230..152305
FT                   /note="tRNA Ala anticodon CGC, Cove score 84.28"
FT   CDS             complement(152428..>153216)
FT                   /transl_table=11
FT                   /locus_tag="BP2112"
FT                   /product="putative oxidoreductase"
FT                   /note="The methionine start codon of this CDS is
FT                   substituted with a threonine. Similar to Escherichia coli
FT                   oxidoreductase UcpA or B2426 SWALL:UCPA_ECOLI
FT                   (SWALL:P37440) (263 aa) fasta scores: E(): 3.7e-23, 39.84%
FT                   id in 256 aa, and to Rhizobium sp putative short-chain type
FT                   dehydrogenase/reductase Y4lA SWALL:Y4LA_RHISN
FT                   (SWALL:P55541) (278 aa) fasta scores: E(): 2.9e-25, 37.84%
FT                   id in 251 aa"
FT                   /db_xref="GOA:Q7VWT1"
FT                   /db_xref="HSSP:1GZ6"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWT1"
FT                   /protein_id="CAE42390.1"
FT                   /translation="TAGRTDCAPAAGRLAGRVALITGAAGGIGSAAALRFAAEGAALAL
FT                   LDRRPDAIEQLAGRICGQGGQAIGVAADVTDDDSVRQAVRRAVEHFGRIDTLFNCAGGS
FT                   VAGDTAVDKVDLALWNRTLRLDLDGTMLCCRHAVPAIVRAGGGAVVNMSSGAGLRGSFG
FT                   GHAYTAAKGAVIALTRALAAEYAPHGVRVNAICAGRIRTERILRNLDAGAPAQAGAAQR
FT                   YPCREGDPIDIAHIALFLASHESRMITGEAIAANGGYSAF"
FT   misc_feature    complement(152452..152541)
FT                   /note="HMMPfam hit to PF00678,"
FT   misc_feature    complement(152608..153009)
FT                   /note="HMMPfam hit to PF00106, short chain dehydrogenase"
FT   misc_feature    complement(152671..152757)
FT                   /note="ScanRegExp hit to PS00061, Short-chain
FT                   dehydrogenases/reductases family signature."
FT   variation       complement(153214..153216)
FT                   /note="Threonine (ACG) start codon in pertussis; methionine
FT                   (ATG) start codon in parapertussis and bronchiseptica"
FT   CDS             complement(join(153219..153872,153876..154667))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2113"
FT                   /product="putative amidase (pseudogene)"
FT                   /note="Pseudogene. This CDS contains an in-frame TGA stop
FT                   codon. The sequence has been checked and believed to be
FT                   correct. Similar to many e.g. Pseudomonas sp.
FT                   6-aminohexanoate-cyclic-dimer hydrolase nylA SW:NYLA_PSES8
FT                   (P13398) (492 aa) fasta scores: E(): 6.6e-32, 34.86% id in
FT                   479 aa and Streptomyces coelicolor putative amidase
FT                   SC7H9.13C TR:Q9EWI3 (EMBL:AL450223) (490 aa) fasta scores:
FT                   E(): 2.5e-49, 38.93% id in 488 aa"
FT                   /db_xref="PSEUDO:CAE42391.1"
FT   misc_feature    complement(join(153294..153872,153876..154589))
FT                   /note="HMMPfam hit to PF01425, Amidase"
FT   variation       complement(153873..153875)
FT                   /note="TGA stop in pertussis; TGG in parapertussis"
FT   CDS             complement(154699..155520)
FT                   /transl_table=11
FT                   /locus_tag="BP2114"
FT                   /product="putative hydrolase"
FT                   /note="Similar to many hydrolases e.g. Rhodococcus opacus
FT                   3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone
FT                   decarboxylase pcaL TR:O67982 (EMBL:AF003947) (400 aa) fasta
FT                   scores: E(): 1.3e-10, 29.04% id in 272 aa"
FT                   /db_xref="GOA:Q7VWT0"
FT                   /db_xref="InterPro:IPR000073"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWT0"
FT                   /protein_id="CAE42392.1"
FT                   /translation="MMQHYYERDGVRLSYYLDDYTDPWTQAPTLLLLLHGAMANAQRFY
FT                   SWVPGLSRDYRVVRADLRGHGLSDVPPADKPLDLQVLTEDILALLDHLGCERVHLAGNS
FT                   AGGYVGQHLAMQHPQRIETLALFGSAPGLRNSQASTWLERVAEKGLRQFLADTIDDRFP
FT                   PELVGTPRCEQFLDALSDHDMAYIGRFVGYMAQQEWGDQLHRITCPTLVVIPGAGRIGA
FT                   MDAYQPMRDHLKRAEILVYEGERHSICEYLPQRCVADLRSFLARHGGPAWP"
FT   misc_feature    complement(154729..155358)
FT                   /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold"
FT   CDS             complement(155539..156393)
FT                   /transl_table=11
FT                   /locus_tag="BP2115"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to hypothetical proteins e.g. Helicobacter
FT                   pylori J99 hypothetical protein JHP0295 TR:Q9ZMC6
FT                   (EMBL:AE001466) (293 aa) fasta scores: E(): 2.6e-24, 36.8%
FT                   id in 288 aa and Yersinia pseudotuberculosis hypothetical
FT                   protein TR:Q9X9F8 (EMBL:AJ236887) (293 aa) fasta scores:
FT                   E(): 8.9e-20, 37.5% id in 288 aa"
FT                   /db_xref="GOA:Q7VWS9"
FT                   /db_xref="InterPro:IPR002509"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWS9"
FT                   /protein_id="CAE42393.1"
FT                   /translation="MAAKQSLVCLTFDFDAISVWLARGMDSPTPVSRGEFCAVAADRVL
FT                   DLLERLGLPSTWFIPGHTLASYPEHCRRVHEAGHEIGHHGWTHVAPNLMTREEELDGLV
FT                   RANEAIRALTGRVARGYRSPSWDLSPHTLALLLEHGFDYDSSMMGHDYQPYPVRQGDSF
FT                   PLDEPAVFGAPTRLIEVPVSWSLDDYPHFEFVRAGQSVIPGLMNANSVMDNWIEDFLYL
FT                   KENFDWGVITYTFHPFVIGRGHRMRMLERLLRRLIDEGATFVRMEEAVDAYRQRQALAA
FT                   GAA"
FT   misc_feature    complement(155860..156315)
FT                   /note="HMMPfam hit to PF01522, Polysaccharide deacetylase"
FT   CDS             complement(156397..157368)
FT                   /transl_table=11
FT                   /locus_tag="BP2116"
FT                   /product="putative exported protein"
FT                   /note="Similar to hypothetical proteins e.g. Rhizobium
FT                   meliloti conserved hypothetical protein SMA1927 TR:AAK65716
FT                   (EMBL:AE007292) (330 aa) fasta scores: E(): 1.1e-40, 38.26%
FT                   id in 311 aa and Bordetella pertussis hypothetical kDa
FT                   protein SW:YBR5_BORPE (O30446) (323 aa) fasta scores: E():
FT                   2e-28, 32.82% id in 326 aa"
FT                   /db_xref="GOA:Q7VWS8"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWS8"
FT                   /protein_id="CAE42394.1"
FT                   /translation="MKIKSMLLAVLAVSMAGVSAAALSQGFPERALRVVVPYPPGGTTD
FT                   VLVRLLQKPVADAAGQSVVVDNRPGGASVIGTSHVAQAAPDGYTVLGGDLSMLVNPSLM
FT                   KDLPYDTLRDFRGVTMLARAPLVLLVHPSVPANTLDELIALAKAKPGTLNFASGGYGTS
FT                   THMAGEMFRRAAGIDVVHVPYQGVAPAMSALLGGQVQMYFGGTTTGLPHIQSGKLRALA
FT                   VTGEAPSPLLPEVPTFVSRGIQGVNADTYWGVYAPARTPDAVIEKLNAYYTGALRDPAV
FT                   QQRTRDLGLTLIGNSAAEHTAQMKTMIGDWGAFVKEADIRLE"
FT   misc_feature    complement(157297..157368)
FT                   /note="Signal peptide predicted for BP2116 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.485 between residues 24 and 25"
FT   CDS             join(157407..158027,158029..158229)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2117"
FT                   /product="putative transcriptional regulator (pseudogene)"
FT                   /note="Pseudogene. This CDS appears to have a frameshift
FT                   mutation following codon 207. The frameshift occurs within
FT                   a polymeric tract of (C)4. The sequence has been checked
FT                   and believed to be correct. Shows weak similarity to
FT                   Synechococcus sp. nitrogen regulator NtcA TR:O30778
FT                   (EMBL:AF017020) (224 aa) fasta scores: E(): 2.2e-07, 27.68%
FT                   id in 177 aa"
FT                   /db_xref="PSEUDO:CAE42395.1"
FT   variation       158025..158028
FT                   /note="(C)4 in pertussis; (C)3 in parapertussis and
FT                   bronchiseptica"
FT   CDS             complement(158507..159655)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2118"
FT                   /product="transposase (Pseudogene)"
FT                   /note="Pseudogene. Transposase for IS481 element. The
FT                   transposase lacks a stop codon, hence it is fused to the
FT                   C-terminal portion of the disrupted CDS"
FT                   /db_xref="PSEUDO:CAE42396.1"
FT   repeat_region   complement(158721..159757)
FT   misc_feature    complement(158741..159274)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   repeat_region   complement(159726..159757)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(159754..160050)
FT                   /transl_table=11
FT                   /locus_tag="BP2119"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein PA0490 TR:Q9I628 (EMBL:AE004486) (97 aa) fasta
FT                   scores: E(): 1.6e-12, 50.53% id in 93 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWS7"
FT                   /protein_id="CAE42397.1"
FT                   /translation="MQNEDSFFGSLGAMLGAVIRAIVDGLRYVFGGLGRALGDFFGGLA
FT                   SALGMSPSVFNFALLVLGLLLLWTAVRAFMGRAIVAGIFWLVLAMLLLGGLIG"
FT   misc_feature    complement(join(159760..159816,159838..159903,
FT                   159964..160029))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BP2119 by TMHMM2.0 at aa 7-29, 49-71 and 78-97"
FT   CDS             160225..161577
FT                   /transl_table=11
FT                   /gene="gor"
FT                   /locus_tag="BP2120"
FT                   /product="glutathione reductase"
FT                   /EC_number="1.8.1.7"
FT                   /note="Similar to e.g. Pseudomonas aeruginosa glutathione
FT                   reductase Gor or PA2025 SW:GSHR_PSEAE (P23189) (451 aa)
FT                   fasta scores: E(): 1.6e-143, 80.44% id in 450 aa, and to
FT                   Escherichia coli glutathione reductase Gor or b3500
FT                   SWALL:GSHR_ECOLI (SWALL:P06715) (450 aa) fasta scores: E():
FT                   2.1e-67, 45.11% id in 450 aa"
FT                   /db_xref="GOA:Q7VWS6"
FT                   /db_xref="HSSP:1GER"
FT                   /db_xref="InterPro:IPR000815"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWS6"
FT                   /protein_id="CAE42398.1"
FT                   /translation="MAFDFDLYVIGAGSGGVRAARFAAGYGARVAVAESRYLGGTCVNV
FT                   GCVPKKLLVYGAHFHEDFEQAAGFGWNPGRPEFDWPTLIANKNREIERLNGIYRNLLVN
FT                   SGVALHEGHARIVDPHTVEINGQRHSAQHILVATGGWPFVPDIPGKEHAITSNDAFFLP
FT                   ELPRRVLVVGGGYIAVEFASIFDGLGAQTVQVYRRELFLRGFDGSVREHLRDELVKKGL
FT                   DLRFNTDVERIDKRADGVLAVTLSDGSVLETDCVFYATGRRAMLDDLGLENTGVRLAES
FT                   GYIEVDDEYRTSEPSILAIGDVIGRVPLTPVALAEGMAVARRLFRPQEYRKVDYDLIPT
FT                   AVFSLPNIGTVGLTTEQALERGFRVTRYESRFRPMKLTLTQSQEKTLMKLVVDADSQKV
FT                   LGCHMVGPDAGEIVQGLAVALKAGATKQVFDDTIGIHPTAAEEFVTMRTAT"
FT   misc_feature    160243..161133
FT                   /note="HMMPfam hit to PF00070, Pyridine
FT                   nucleotide-disulphide oxidoreductase"
FT   misc_feature    160339..160371
FT                   /note="ScanRegExp hit to PS00076, Pyridine
FT                   nucleotide-disulphide oxidoreductases class-I active site.
FT                   Confirmed by InterPro eMOTIF pattern match."
FT   repeat_region   complement(161691..162921)
FT                   /note="Insertion sequence"
FT   CDS             complement(161720..162736)
FT                   /transl_table=11
FT                   /locus_tag="BP2121"
FT                   /product="transposase for IS1663"
FT                   /note="Similar to Neisseria meningitidis putative
FT                   invertase/transposase Nma1800 TR:Q9JTF3 (EMBL:AL162757)
FT                   (318 aa) fasta scores: E(): 2e-17, 28.48% id in 316 aa and
FT                   Acinetobacter spSE19. pilin inverting protein ChnY
FT                   TR:Q9F7E1 (EMBL:AF282240) (324 aa) fasta scores: E():
FT                   8.2e-50, 47.516% id in 322 aa"
FT                   /db_xref="GOA:Q7TTD7"
FT                   /db_xref="InterPro:IPR003346"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTD7"
FT                   /protein_id="CAE42399.1"
FT                   /translation="MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKVVVN
FT                   TAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQAATALPQVRVSLVNPAQARDFAKA
FT                   LALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELNRKE
FT                   KSQFSPSAPVVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQ
FT                   AGNAILAVMHNRHIDSAQSLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAA
FT                   LVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLCFGVLKNRIPYQPNYAMNG"
FT   misc_feature    complement(161852..162184)
FT                   /note="HMMPfam hit to PF02371, Transposase
FT                   IS116/IS110/IS902 family"
FT   misc_feature    complement(162197..162484)
FT                   /note="HMMPfam hit to PF01548, Transposase"
FT   CDS             join(163002..163133,163132..163500)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2122"
FT                   /product="putative membrane protein (pseudogene)"
FT                   /note="Pseudogene. This CDS appears to have a frameshift
FT                   mutation around codon 44. The sequence has been checked and
FT                   believed to be correct. Similar to many hypothetical
FT                   membrane proteins e.g. Rhizobium meliloti putative amino
FT                   acid efflux protein SMC00423 TR:CAC41779 (EMBL:AL591783)
FT                   (210 aa) fasta scores: E(): 1.2e-24, 51.42% id in 210 aa"
FT                   /db_xref="PSEUDO:CAE42400.1"
FT   variation       163130
FT                   /note="large deletion in pertussis relative to
FT                   parapertussis and bronchiseptica"
FT   CDS             join(163547..163756,163761..164708)
FT                   /pseudo
FT                   /transl_table=11
FT                   /gene="aroG"
FT                   /locus_tag="BP2123"
FT                   /product="phospho-2-dehydro-3-deoxyheptonate aldolase,
FT                   Phe-sensitive (pseudogene)"
FT                   /EC_number="2.5.1.54"
FT                   /note="Pseudogene. This CDS appears to have a frameshift
FT                   mutation following codon 70. The frameshift occurs within a
FT                   dimeric tract of (GAGG)2. The sequence has been checked and
FT                   believed to be correct. Similar to Escherichia coli
FT                   phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive
FT                   AroG or B0754 or Z0924 or Ecs0782 SWALL:AROG_ECOLI
FT                   (SWALL:P00886) (350 aa) fasta scores: E(): 1.3e-74, 57.1%
FT                   id in 345 aa, and to Ralstonia solanacearum probable
FT                   phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive
FT                   AroG2 or Rsc0743 or Rs05110 SWALL:CAD14273 (EMBL:AL646060)
FT                   (392 aa) fasta scores: E(): 5.2e-120, 80% id in 375 aa.
FT                   Also similar to BP2908, 59.249% identity (59.420% ungapped)
FT                   in 346 aa overlap."
FT                   /db_xref="PSEUDO:CAE42401.1"
FT   misc_feature    join(163655..163753,163758..164690)
FT                   /note="HMMPfam hit to PF00793, DAHP synthetase I family"
FT   variation       163754..163761
FT                   /note="(GAGG)2 in pertussis; (GAGG)1 in parapertussis and
FT                   bronchiseptica"
FT   CDS             complement(164716..165729)
FT                   /transl_table=11
FT                   /locus_tag="BP2124"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to hypothetical proteins e.g. Rhizobium
FT                   meliloti hypothetical protein SMB20006 TR:CAC48409
FT                   (EMBL:AL603642) (317 aa) fasta scores: E(): 5.3e-55, 52.34%
FT                   id in 298 aa"
FT                   /db_xref="GOA:Q7VWS5"
FT                   /db_xref="InterPro:IPR011576"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWS5"
FT                   /protein_id="CAE42402.1"
FT                   /translation="MAVVRYDIPGALMSDSLVFHTDLPGLADGPWHGGELAMQERAGAR
FT                   ERMAQLGPRVIRDYMPQQHRDFFAQLPFMLLATVDAQGDPWASVLEGPPGFAHSPDERT
FT                   LRLDAWPAGDDPARAGLAHGAGVGMLGIELSTRRRNRVNGHVAALDGQGFCVAVTQSFG
FT                   NCPQYIQTRHARQAAPAPQPARWLAGLDAAARTLVGQADTLFVASYARQAGPHAVDVSH
FT                   RGGPPGFVHLRGDTLTMPDFSGNRFFNTLGNLLANPRAGLVFVDFARGDLLQLCGRAEV
FT                   LAEAGAPAAYPGAQRLWRVHVERAVRRPAALGLRAGFGEYAAQLAAVGQWAGEPPA"
FT   CDS             complement(165816..166721)
FT                   /transl_table=11
FT                   /locus_tag="BP2125"
FT                   /product="putative lysR-family transcriptional regulator"
FT                   /note="Similar to many putative transcriptional regulators
FT                   e.g. Rhizobium meliloti putative gstR-like transcriptional
FT                   regulator protein TR:CAC48407 (EMBL:AL603642) (301 aa)
FT                   fasta scores: E(): 4e-44, 43.47% id in 299 aa"
FT                   /db_xref="GOA:Q7VWS4"
FT                   /db_xref="HSSP:1IXC"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWS4"
FT                   /protein_id="CAE42403.1"
FT                   /translation="MDKFQEVSLFLAVAEARSFAAAGRRLGLSASTVTRAVAALEARLG
FT                   ILLLVRTTRHVRLTDAGEQFAHDCRAVLDSLAQAEEAAAGGRVQPRGELSVTAPALFGE
FT                   LHVMPAIVDYLRQHRQVRLRALLVDRVVRLLDEGVDVAVRIGRLPDSSLTAIHVGDVRR
FT                   IVCAAPDFLARAGVPSHPDMLPRYCTVSVVMEGQMDRWRFVCDGHARDLDVQAQLTVTS
FT                   SQAAVRAAVQGWGLAQVVSYQAAGALREGALQVVLREFEPPPLPVHVVYPEGRKGAAKV
FT                   RSFVEFCVERLRAELGELPA"
FT   misc_feature    complement(166293..166712)
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family"
FT   misc_feature    complement(166578..166670)
FT                   /note="ScanRegExp hit to PS00044, Bacterial regulatory
FT                   proteins, lysR family signature."
FT   misc_feature    complement(166608..166673)
FT                   /note="Predicted helix-turn-helix motif with score 1663
FT                   (+4.85 SD) at aa 17-38, sequence RSFAAAGRRLGLSASTVTRAVA"
FT   CDS             166878..167222
FT                   /transl_table=11
FT                   /locus_tag="BP2125A"
FT                   /product="putative exported protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein Pa1969 TR:Q9I2D5 (EMBL:AE004623) (130 aa) fasta
FT                   scores: E()=4.5e-06, 38.18% id in 110 aa."
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWS3"
FT                   /protein_id="CAE42404.1"
FT                   /translation="MIWKLIPIALLAGLTACASGTRTDSSPPASSQTSSSAAPGSATTP
FT                   SGPDCDAQPVQNLVGQKYSDSVGNDALRRSNSGSMRLLKPGQVMTMEYNARRLNIILEG
FT                   NGSISALRCG"
FT   CDS             167380..167838
FT                   /transl_table=11
FT                   /locus_tag="BP2126"
FT                   /product="putative oxidoreductase subunit"
FT                   /note="Similar to e.g. Brevundimonas diminuta isoquinoline
FT                   1-oxidoreductase alpha subunit iorA SW:IORA_BREDI (Q51697)
FT                   (152 aa) fasta scores: E(): 1.3e-27, 50.98% id in 153 aa
FT                   and Pseudomonas aeruginosa probable oxidoreductase PA1881
FT                   TR:Q9I2L6 (EMBL:AE004614) (153 aa) fasta scores: E():
FT                   6.1e-37, 65.13% id in 152 aa"
FT                   /db_xref="GOA:Q7VWS2"
FT                   /db_xref="HSSP:1DGJ"
FT                   /db_xref="InterPro:IPR001041"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWS2"
FT                   /protein_id="CAE42405.1"
FT                   /translation="MPTLNINGKDTVLDAPGEMPLLWALRDVADLTGTKYGCGMALCGA
FT                   CTVHADGQPIRACITPVQAVAGRRIVTIEGVAADRTGQAVQQAWRELDVAQCGYCQSGQ
FT                   IMSAAALLRANPAPTDRDIDDAMNGNICRCATYVRIRAAIHAAAAALA"
FT   misc_feature    167383..167571
FT                   /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster
FT                   binding domain"
FT   misc_feature    167491..167517
FT                   /note="ScanRegExp hit to PS00197, 2Fe-2S ferredoxins,
FT                   iron-sulfur binding region signature."
FT   misc_feature    167593..167817
FT                   /note="HMMPfam hit to PF01799, [2Fe-2S] binding domain"
FT   CDS             167852..170068
FT                   /transl_table=11
FT                   /locus_tag="BP2127"
FT                   /product="putative exported oxidoreductase subunit"
FT                   /note="Similar to e.g. Brevundimonas diminuta isoquinoline
FT                   1-oxidoreductase beta subunit iorB SW:IORB_BREDI (Q51698)
FT                   (781 aa) fasta scores: E(): 4e-16, 34.58% id in 775 aa and
FT                   Rhizobium meliloti putative aldehyde dehydrogenase protein
FT                   SMB20342 TR:CAC48728 (EMBL:AL603643) (737 aa) fasta scores:
FT                   E(): 1.4e-92, 50% id in 746 aa"
FT                   /db_xref="GOA:Q7VWS1"
FT                   /db_xref="InterPro:IPR008274"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWS1"
FT                   /protein_id="CAE42406.1"
FT                   /translation="MRIAIQNLSRRRFVQGAGGLLLGLSLPPLARRAMAAGPQAGDGFA
FT                   ANAFVRIGADGRVTVLAKHLEMGQGAYTGLATLLAEELDADWRQVRVEGAPADSARYGN
FT                   QALGGLQGTGGSTAMFDSWEPMRRAGATARAMLVQAAAQRWQVPADTIEVAEGVLSHPA
FT                   SGRRAGFGELAEAAARSPVPEDVPLKDPARFRLIGKHRLPHVDSAAKSDGSALYTQDMK
FT                   LPGMLVAVVAHAPRLGAAVARVDDAAARAVPGVRAVVRFGGAALRHAGVAVLATNTWAA
FT                   RAGRDALRIEWDEGPAYRQGSADILARYREAVGRPGSMAARKGDIDAAFAGAAKVIEAE
FT                   YTYPYLAHAAMEPLNCLVRLDDERCEIWNGEQFQTADQRAIAQYLGMPAERITLTQLYA
FT                   GGSFGRRASSHADYLLEAVAIARTARAQGLNAPVKLVWMREDDMRAGYYRPLNLHRARL
FT                   ALGADGALQAVHVRMAGQSILLGTPLADWVRDGVDPVSVEGLSDLAYAVPNLQVELHTP
FT                   TDVPVPVLWYRSVGHTHTAFSAETLIDEAAVAAGQDPVAYRLALLAAHPRHREVLQLAA
FT                   VRAGWREPLAAGAPGTRRGRGVAVHESFRSVMAQVVEVTIAADGALKVDRVVCAAVHCG
FT                   LAVNPDVVRAQMEGGIGFALSTALHGAITLKDGAVEQSNFHDYPVLRLAEMPAVEVHIA
FT                   PSTQPPTGVGEPGVPPLAPALANAIAQATGQRLRTLPLGTTVKA"
FT   misc_feature    167852..167956
FT                   /note="Signal peptide predicted for BP2127 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.999) with cleavage site
FT                   probability 0.980 between residues 35 and 36"
FT   misc_feature    167951..168352
FT                   /note="HMMPfam hit to PF01315, Aldehyde oxidase and
FT                   xanthine dehydrogenase, a/b hammerhead domain"
FT   misc_feature    168485..168628
FT                   /note="HMMPfam hit to PF01315, Aldehyde oxidase and
FT                   xanthine dehydrogenase, a/b hammerhead domain"
FT   misc_feature    168812..169267
FT                   /note="HMMPfam hit to PF01315, Aldehyde oxidase and
FT                   xanthine dehydrogenase, a/b hammerhead domain"
FT   misc_feature    169430..169516
FT                   /note="HMMPfam hit to PF01315, Aldehyde oxidase and
FT                   xanthine dehydrogenase, a/b hammerhead domain"
FT   CDS             170065..171126
FT                   /transl_table=11
FT                   /locus_tag="BP2128"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to many e.g. Pseudomonas aeruginosa
FT                   hypothetical protein PA4618 TR:Q9HVH3 (EMBL:AE004876) (323
FT                   aa) fasta scores: E(): 2.4e-34, 37.72% id in 326 aa. Also
FT                   similar to BP0576, 50.893% identity (53.271% ungapped) in
FT                   336 aa overlap."
FT                   /db_xref="GOA:Q7VWS0"
FT                   /db_xref="InterPro:IPR003777"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWS0"
FT                   /protein_id="CAE42407.1"
FT                   /translation="MRSIAMQAADLYVLQTAQSWLDAGQAAVLLTVARTWGSSPRPPGA
FT                   MMAIRADGAVAGSVSGGCIEDDLIDQIRQRGIAALCPGARPALATYGVDGEQARRFGLP
FT                   CGGTLQLVLEPLGAHSRLADLLARLRAHQTVRRSVRLADGAVTLEPAAADAEPRLDGAG
FT                   FASVLGPRHRLLVVGAGQLSRYLCEMAIALDFDVTVSDPRQEYRAGWQVEGVALTTAMP
FT                   DDMVIAARPDARTAVIALTHDPKLDDLALIDALQTPAFYVGALGSRANHARRVARLREH
FT                   FGLTPAQLARLRGPAGIYIGSRTPPEIALSIMAEIVAGKNGAPLPPAASVAAGKARQPG
FT                   GAGVIQAGLCATL"
FT   misc_feature    170116..171039
FT                   /note="HMMPfam hit to PF02625, Uncharacterized BCR,
FT                   COG1975"
FT   CDS             171155..172129
FT                   /transl_table=11
FT                   /locus_tag="BP2129"
FT                   /product="putative araC-family transcriptional regulator"
FT                   /note="Similar to many putative transcriptional regulators
FT                   e.g. Pseudomonas aeruginosa probable transcriptional
FT                   regulator PA2047 TR:Q9I268 (EMBL:AE004631) (329 aa) fasta
FT                   scores: E(): 7.8e-55, 55.47% id in 292 aa"
FT                   /db_xref="GOA:Q7VWR9"
FT                   /db_xref="InterPro:IPR012287"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWR9"
FT                   /protein_id="CAE42408.1"
FT                   /translation="MSALPDSPSASPPPRHDELASLIERHTPADGSTATALPGLNFYRS
FT                   SSPTELNVSFYRPSLALLAQGAKRVQLGDDVYEYDTSHYLLTSFDLPVASRVTLATPGT
FT                   PYLCFALDLDPHRIAGLISELGAPPAGQPLRRGLTLARLTEPLLDAVLRLARLLDTPAD
FT                   IPVLAPLIEREIHYRLLSGPMGGRLRHIARAEGTALQIARAIDWLRRHYAQPLRVEHLA
FT                   TTVNMSVSSLHHHFKAVTALSPLQYQKQLRLHEAHRLMVAETLDAGAAAHRVGYESASQ
FT                   FSREYSRLCGAPPLRDAARLRGTAPADAQSPGLARASASATVS"
FT   misc_feature    171752..171886
FT                   /note="ScanRegExp hit to PS00041, Bacterial regulatory
FT                   proteins, araC family signature."
FT   misc_feature    171797..172057
FT                   /note="HMMPfam hit to PF00165, Bacterial regulatory
FT                   helix-turn-helix proteins, araC family"
FT   misc_feature    171800..171865
FT                   /note="Predicted helix-turn-helix motif with score 1390
FT                   (+3.92 SD) at aa 216-237, sequence LRVEHLATTVNMSVSSLHHHFK"
FT   CDS             complement(172081..172899)
FT                   /transl_table=11
FT                   /locus_tag="BP2130"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Xanthomonas axonopodis hypothetical
FT                   protein Xac2490 SWALL:AAM37341 (EMBL:AE011886) (294 aa)
FT                   fasta scores: E(): 1.3e-28, 54.26% id in 293 aa, and to
FT                   Xanthomonas campestris hypothetical protein Xcc2358
FT                   SWALL:AAM41636 (EMBL:AE012344) (364 aa) fasta scores: E():
FT                   7.3e-28, 52.74% id in 292 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWR8"
FT                   /protein_id="CAE42409.1"
FT                   /translation="MTGTMTIRIDEELRAYIDPLTPDEYAALEQSLLAEGCRDALVLWG
FT                   DLLVDGHNRHAICSKHGIAFNTVQNTRLQSMDDVRLWMIDNHLGRRSVSDFQRGVLALR
FT                   KKEILESRRQAGEGDAAPAGGDGPAPLTRQTLARQARLSSATLGQIEKIRQQAAPELVR
FT                   AVQSGEISINAAAAVATLPAPQQAAAAAGGRGELRAAARQVREARLPVRRAPEAEPAPA
FT                   AELRVVDDYPAEVARLDRLVAQLAEERDALKKKVVQLTVALAEARAKPGD"
FT   misc_feature    complement(172444..172509)
FT                   /note="Predicted helix-turn-helix motif with score 1279
FT                   (+3.54 SD) at aa 131-152, sequence LTRQTLARQARLSSATLGQIEK"
FT   CDS             complement(172912..173520)
FT                   /transl_table=11
FT                   /locus_tag="BP2131"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to hypothetical proteins e.g. Pseudomonas
FT                   aeruginosa hypothetical protein PA4012 TR:Q9HX15
FT                   (EMBL:AE004818) (197 aa) fasta scores: E(): 5.1e-10, 32.97%
FT                   id in 188 aa"
FT                   /db_xref="GOA:Q7VWR7"
FT                   /db_xref="InterPro:IPR003111"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWR7"
FT                   /protein_id="CAE42410.1"
FT                   /translation="MAEIPLFPLSNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVV
FT                   VLEQGTEVRRPDGREVLARAGTMARIDHWEAPMPALLELACTGTGRFRLHACTQGKYGL
FT                   WTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHIMPMAAPFRLDDCGWVA
FT                   DRWAEMLSLPPADKARLLLLPPLDRLREIDAVLAADGHA"
FT   misc_feature    complement(172927..173514)
FT                   /note="HMMPfam hit to PF02190, ATP-dependent protease La
FT                   (LON) domain"
FT   CDS             173695..174090
FT                   /transl_table=11
FT                   /locus_tag="BP2132"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to hypothetical proteins e.g. Pseudomonas
FT                   aeruginosa hypothetical protein PA1353 TR:Q9I3Z1
FT                   (EMBL:AE004565) (137 aa) fasta scores: E(): 6.3e-21, 47.69%
FT                   id in 130 aa"
FT                   /db_xref="InterPro:IPR009725"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWR6"
FT                   /protein_id="CAE42411.1"
FT                   /translation="MFDGDCAEVMRLYERILGGKLDALITYGESPPEMPCEPQDRDLIM
FT                   HARLRLDDQLLMASDSNSQCPYEGKKGFSLSLVYPTVSDAQRIFNALAEGGQVTMPLQK
FT                   TFWAEIFGVLVDRHGTAWMISGGQMNS"
FT   CDS             174109..175548
FT                   /transl_table=11
FT                   /locus_tag="BP2133"
FT                   /product="putative transmembrane efflux protein"
FT                   /note="Similar to many e.g. Streptomyces lavendulae
FT                   mitomycin C translocase mct TR:Q9WVV3 (EMBL:AF127374) (484
FT                   aa) fasta scores: E(): 8.6e-53, 41.7% id in 470 aa and
FT                   Streptomyces lipmanii puromycin resistance protein Pur8
FT                   SW:PUR8_STRLP (P42670) (503 aa) fasta scores: E(): 7.2e-49,
FT                   40.51% id in 464 aa"
FT                   /db_xref="GOA:Q7VWR5"
FT                   /db_xref="InterPro:IPR011701"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWR5"
FT                   /protein_id="CAE42412.1"
FT                   /translation="MPHTLDERKRWLALMVLCLGVLMIVLDTTIVNVALPSIKADLGFT
FT                   EASLVWVVNAYMLTFGCFLLLGGRLGDLLGQRRMFLAGLTLFTLASLACGMAQGQAMLV
FT                   AARAVQGLGGAVVSAVALSLIMTLFTEPAERARAMGVYGFVCAGGGSIGVLLGGLLTSS
FT                   LSWHWIFLVNLPIGALVYALCLPLLPASQGPTGHPRLDLAGAAAITASLMLAVYAVVNG
FT                   NEAGWTSPQSLGLLALAVALLALFLRIEARVPAPLMPLSLFALRNVATANIVGVLWAAA
FT                   MFAWFFISALYMQLVLGYTAMQVGLGFLPANIIMAAFSLGLSARLVMRFDIRAPLVCGL
FT                   LVAALGLALFARAPVAGSFAVDVLPGMLLLGLGAGIAFNPVLLAAMSDVDPSEAGLASG
FT                   VVNTSFMMGGALGLAVLASLAAGRSASLRAGGADVLTALNGGYHAAFAVGAVFAALAAL
FT                   LAGVLLRRPQPGASAPAADAH"
FT   misc_feature    174109..174207
FT                   /note="Signal peptide predicted for BP2133 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.777) with cleavage site
FT                   probability 0.512 between residues 33 and 34"
FT   misc_feature    join(174142..174210,174253..174312,174346..174414,
FT                   174427..174495,174529..174597,174610..174678,
FT                   174712..174768,174781..174849,174910..174978,
FT                   175006..175074,175108..175167,175195..175263,
FT                   175300..175368,175432..175500)
FT                   /note="14 probable transmembrane helices predicted for
FT                   BP2133 by TMHMM2.0 at aa 12-34, 49-68, 80-102, 107-129,
FT                   141-163, 168-190, 202-220, 225-247, 268-290, 300-322,
FT                   334-353, 363-385, 398-420 and 442-464"
FT   CDS             175577..175924
FT                   /transl_table=11
FT                   /locus_tag="BP2134"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to hypothetical proteins e.g. Agrobacterium
FT                   tumefaciens hypothetical protein TR:AAK88141
FT                   (EMBL:AE008154) (118 aa) fasta scores: E(): 2.1e-19, 42.98%
FT                   id in 114 aa and Arabidopsis thaliana hypothetical protein
FT                   F2K13_90 TR:Q9LFK7 (EMBL:AL391141) (135 aa) fasta scores:
FT                   E(): 8.5e-11, 33.04% id in 115 aa"
FT                   /db_xref="GOA:Q7VWR4"
FT                   /db_xref="InterPro:IPR006913"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWR4"
FT                   /protein_id="CAE42413.1"
FT                   /translation="MHYHGSCHCGTIRFDVEGELTGAMSCNCSICRRKGALLWFVPRGH
FT                   LRLATPDEQIATYTFNRHLIKHRFCPTCGIHTHGEGVDQQGRAMAAINIRCLDDVDLDA
FT                   VAVHQYDGRAA"
FT   CDS             complement(175943..176893)
FT                   /transl_table=11
FT                   /locus_tag="BP2135"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTA3"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTA3"
FT                   /protein_id="CAE42414.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS"
FT   repeat_region   175943..175974
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   complement(175943..176995)
FT   misc_feature    complement(175979..176512)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   misc_feature    complement(176570..176635)
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   repeat_region   complement(176964..176995)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             177034..177447
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2136"
FT                   /product="putative acetyltransferase (pseudogene)"
FT                   /note="Pseudogene. This CDS is disrupted by the insertion
FT                   of IS481. Similar to putative acetyltransferases e.g.
FT                   Pseudomonas aeruginosa probable acetyltransferase PA2271
FT                   TR:Q9I1K2 (EMBL:AE004653) (171 aa) fasta scores: E():
FT                   1.2e-16, 48.36% id in 122 aa"
FT                   /db_xref="PSEUDO:CAE42415.1"
FT   misc_feature    177088..177324
FT                   /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT)
FT                   family"
FT   repeat_region   177444..177475
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   177444..178496
FT   CDS             177546..178496
FT                   /transl_table=11
FT                   /locus_tag="BP2137"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTA3"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTA3"
FT                   /protein_id="CAE42416.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS"
FT   misc_feature    177804..177869
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   misc_feature    177927..178460
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   repeat_region   complement(178465..178496)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             178535..180397
FT                   /transl_table=11
FT                   /locus_tag="BP2138"
FT                   /product="putative ABC-transporter membrane-spanning
FT                   ATP-binding component"
FT                   /note="Similar to ABC-transporter ATP-binding components
FT                   e.g. Vibrio cholerae putative toxin secretion transporter
FT                   VC1446 TR:Q9KS15 (EMBL:AE004223) (721 aa) fasta scores:
FT                   E(): 3.2e-44, 32.58% id in 577 aa"
FT                   /db_xref="GOA:Q7VWR3"
FT                   /db_xref="HSSP:1MV5"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWR3"
FT                   /protein_id="CAE42417.1"
FT                   /translation="MPGYWGPAFARETPTMRMLWTYLRPHGGLALLALLLAAASQVLAL
FT                   IDPIIFGRIIDEYAIGRAGKTGDQLLAGVLGLLALALAVAILSRLAKALQEYVTRLVVQ
FT                   KLGTQIFNDGLRQVMRLRFQEFEELRSGETLSLLQKVRSDSERFINAFINTAFAAGVGV
FT                   AFLCWYSVTRHWLLVPVFFVGVLLLGGLTGLLSRQIRSQQRSIMRETNRNSGFITESLR
FT                   NIELIKSLGLTYPEIRRLQAQTQQIFALEMQKIKRIRLLSFLQGMILSVLKLSVLFALL
FT                   WLILRDVLSTGELIAMQFISVAIFAPLQELGNLILAYREADASLNHYAALMARPVERNP
FT                   ESAQDSGPIQRVRFGEVRFRHQGAAENALDGVSFEARLGDTVAFVGPSGSGKSTLFKLL
FT                   VGLYAPDHGEVYYNDVSTRDLRFNPTRRQIGFVTQETHLFSGTLRENMQLVKPDVTDEE
FT                   IVAAMRQASCANVLARSPAGLDTTIGEGGVKLSGGERQRLSIARALVRQPRLLIFDEAT
FT                   SALDSLTEEQITQTIRDVSRRAGQITILIAHRLSTIMHADTIFVLEKGRVVEQGSHAEL
FT                   LAGKGLYYAMWRQQIGERPAVRAPEPQSEPDTAGRGPEAGVSLL"
FT   misc_feature    178535..178666
FT                   /note="Signal peptide predicted for BP2138 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.924) with cleavage site
FT                   probability 0.913 between residues 44 and 45"
FT   misc_feature    join(178613..178681,178739..178807,178976..179044,
FT                   179057..179125,179318..179386,179414..179482)
FT                   /note="6 probable transmembrane helices predicted for
FT                   BP2138 by TMHMM2.0 at aa 27-49, 69-91, 148-170, 175-197,
FT                   262-284 and 294-316"
FT   misc_feature    178622..179458
FT                   /note="HMMPfam hit to PF00664, ABC transporter
FT                   transmembrane region."
FT   misc_feature    178709..178732
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   misc_feature    179669..180229
FT                   /note="HMMPfam hit to PF00005, ABC transporter"
FT   misc_feature    179690..179713
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   misc_feature    180002..180046
FT                   /note="ScanRegExp hit to PS00211, ABC transporters family
FT                   signature. Confirmed by InterPro eMOTIF pattern match."
FT   CDS             180525..181118
FT                   /transl_table=11
FT                   /locus_tag="BP2139"
FT                   /product="putative lipoprotein"
FT                   /note="Unknown function"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWR2"
FT                   /protein_id="CAE42418.1"
FT                   /translation="MKSRRLQLAGAALMMAAACGQAVAGGGHHGHHGYYGGYGHSHGSS
FT                   SDGWWIAGALALVAAGTYLAVSSQPSYAPAAQYSAGGITYTTPGGYAASPYDSTVYDPP
FT                   SYDPPTAYDDAGYAPAGHGQPAYDDGTVAGYPVAPQGAGIARTASRQPTGEAACRREAM
FT                   NQSGYDPATPSAWTTGVSVDSYQRALSACLAGRG"
FT   misc_feature    180525..180596
FT                   /note="Signal peptide predicted for BP2139 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.909) with cleavage site
FT                   probability 0.874 between residues 54 and 55"
FT   misc_feature    180549..180581
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   misc_feature    180666..180725
FT                   /note="1 probable transmembrane helix predicted for BP2139
FT                   by TMHMM2.0 at aa 78-97"
FT   CDS             complement(181131..182060)
FT                   /transl_table=11
FT                   /locus_tag="BP2140"
FT                   /product="putative membrane protein"
FT                   /note="Similar to e.g. Pseudomonas aeruginosa hypothetical
FT                   protein PA4467 TR:Q9HVV1 (EMBL:AE004860) (310 aa) fasta
FT                   scores: E(): 6.6e-31, 48.42% id in 254 aa and Myxococcus
FT                   xanthus GufA protein gufA SW:GUFA_MYXXA (Q06916) (254 aa)
FT                   fasta scores: E(): 9.6e-28, 43.65% id in 252 aa. Also
FT                   similar to BP0194, 47.458% identity (47.782% ungapped) in
FT                   295 aa overlap."
FT                   /db_xref="GOA:Q7VWR1"
FT                   /db_xref="InterPro:IPR003689"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWR1"
FT                   /protein_id="CAE42419.1"
FT                   /translation="MNQPSSLAADLRGAWHAQAQSHPLITLGLAASAAGVVLLLVAGIV
FT                   NALTGENRVHVGYAVLGGTAGFAATALGALMALGLRAISARTQDAMLGFAAGMMLAASA
FT                   FSLILPGLDAAGTIVGPGPAAAAVVALGLGLGVLLMLGLDYFTPHEHERTGHQGPEAAR
FT                   VNRVWLFVLTIILHNLPEGMAIGVSFATGDLRIGLPLTSAIAIQDIPEGLAVALALRAV
FT                   GLPIGRAVLVAVASGLMEPLGALVGVGISSGFALAYPISMGLAAGAMIFVVSHEVIPET
FT                   HRNGHETIATVGLMAGFAVMMFLDTALG"
FT   misc_feature    complement(join(181137..181193,181239..181295,
FT                   181317..181382,181494..181559,181623..181688,
FT                   181734..181790,181827..181892,181923..181988))
FT                   /note="8 probable transmembrane helices predicted for
FT                   BP2140 by TMHMM2.0 at aa 45-67, 77-99, 111-130, 145-167,
FT                   188-210, 247-269, 276-295 and 310-329"
FT   CDS             182230..182688
FT                   /transl_table=11
FT                   /locus_tag="BP2141"
FT                   /product="putative exported protein"
FT                   /note="Unknown function"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWR0"
FT                   /protein_id="CAE42420.1"
FT                   /translation="MHTRTRHATAPLPAMPTSLPARAYALPLILPLLLAACSDAVQTQY
FT                   RDLDEARVAGAIQRGWLPAWLPARTGAITEAHDLDTNRRAARFVLPDGARIEPPGCAPA
FT                   SGRLPSPALALPGWPASLHQDGAAGRYRLYRCADGYAAFDANHGYVWN"
FT   misc_feature    182230..182298
FT                   /note="Signal peptide predicted for BP2141 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.994) with cleavage site
FT                   probability 0.745 between residues 23 and 24"
FT   CDS             182936..183616
FT                   /transl_table=11
FT                   /locus_tag="BP2142"
FT                   /product="putative gntR-family transcriptional regulator"
FT                   /note="Similar to many e.g. Rhizobium meliloti putative
FT                   transcription regulator protein SMC02425 TR:CAC47179
FT                   (EMBL:AL591791) (225 aa) fasta scores: E(): 9.6e-26, 36.6%
FT                   id in 224 aa"
FT                   /db_xref="GOA:Q7VWQ9"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWQ9"
FT                   /protein_id="CAE42421.1"
FT                   /translation="MRSSTDLSAEGISQAIAAAIVSHRLPPGTRLREEALASVYKVSRT
FT                   KIRAALLMLSKDKLIQIVPDKGAFVSKPDAHEAREVYAVRRILEAALAREFVACAAPQD
FT                   YERLEQHLHQEREAIHEGDVQRRNQLLAGFHLQLAEIVGNSVLTAMLHELLARTAVITV
FT                   MYQSAHDASCSSQEHYAFLAAARDGDAERACALMDEHLLHLQTALDFDGAPAPNRDLVA
FT                   ALLS"
FT   misc_feature    182969..183145
FT                   /note="HMMPfam hit to PF00392, Bacterial regulatory
FT                   proteins, gntR family"
FT   CDS             183665..185356
FT                   /transl_table=11
FT                   /locus_tag="BP2143"
FT                   /product="putative sulfate transporter"
FT                   /note="Similar to many e.g. Vibrio cholerae sulfate
FT                   permease family protein VCA0077 TR:Q9KN88 (EMBL:AE004350)
FT                   (553 aa) fasta scores: E(): 1.8e-139, 68.14% id in 540 aa"
FT                   /db_xref="GOA:Q7VWQ8"
FT                   /db_xref="InterPro:IPR011547"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWQ8"
FT                   /protein_id="CAE42422.1"
FT                   /translation="MPHSVACLDLRVIALLEAKRAGLLRRAHWLPNIVSGLIVGVVALP
FT                   LAMAFAIASGAKPEQGLYTAIVAGLLVSLCGGSRVQIAGPTGAFIVILAGITAQHGVAG
FT                   LQLATLMAGCILLALGAARLGAIIKYIPAPVIVGFTAGIGVIIWVGQWKDFFGLPSPAG
FT                   THFHEKLWQLVHSLPQLHLATTALAALSLALLLLNNRLPYLRRVPGPLVALVVATTLQA
FT                   ALGLDGVATIGSAFGGIPQGLPSWQWPEITVSRVIELIGPAFAIAMLGAIESLLSAVVA
FT                   DGMAGTRHDSNQELVGQGLANIVAPLFGGFAATGAIARTATNIRNGGTSPLAGVVHCIT
FT                   LLLMVLLLAPLAENVPLAALAAILFVVAWNMSDAPHFVRMIKRAPRADVAILLVTFVLT
FT                   VFADLVVAVNIGVVIAILHFLRRMASSVQVQAQSPAELGDELGHRGYGPLPDDVLVYAV
FT                   EGPLFFGAAENFERALAATHTDPRTLIIRLRWVPFIDITGLQALEEVITDLQRRGVRVI
FT                   LSGANPRVKAKLHRAGLVGLAGADNVFDRFEDAVLSCRAPAAPATA"
FT   misc_feature    join(183758..183826,183845..183913,183956..184024,
FT                   184043..184111,184202..184255,184439..184507,
FT                   184550..184618,184652..184720,184730..184798,
FT                   184835..184903)
FT                   /note="10 probable transmembrane helices predicted for
FT                   BP2143 by TMHMM2.0 at aa 32-54, 61-83, 98-120, 127-149,
FT                   180-197, 259-281, 296-318, 330-352, 356-378 and 391-413"
FT   misc_feature    184019..184933
FT                   /note="HMMPfam hit to PF00916, Sulfate transporter family"
FT   misc_feature    184982..185314
FT                   /note="HMMPfam hit to PF01740, STAS domain"
FT   CDS             complement(185372..185923)
FT                   /transl_table=11
FT                   /locus_tag="BP2144"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Agrobacterium tumefaciens hypothetical
FT                   protein AGR_C_3685P TR:AAK87787 (EMBL:AE008120) (182 aa)
FT                   fasta scores: E(): 2e-21, 37.83% id in 185 aa and Rhizobium
FT                   meliloti hypothetical protein SMA0191 TR:AAK64759
FT                   (EMBL:AE007204) (176 aa) fasta scores: E(): 1.3e-19, 42.19%
FT                   id in 173 aa"
FT                   /db_xref="GOA:Q7VWQ7"
FT                   /db_xref="InterPro:IPR013538"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWQ7"
FT                   /protein_id="CAE42423.1"
FT                   /translation="MTSPSSASPDGHGARLDAQSIRFERLLPGPIERVWAWLADADKRA
FT                   RWLAGGELPRQPGQTFELHFNHAALTAETAPARYAQYDRPIVAHHTLLRCEPPRVLALT
FT                   WGGAAGEAPSEVLFELSEAGEQVRLVLTHTRLADRAAMLDVAGGWHAHLAVLAGKLAGQ
FT                   APPPFWTTLAQAEQDYEQRL"
FT   CDS             complement(185920..186291)
FT                   /transl_table=11
FT                   /locus_tag="BP2145"
FT                   /product="putative ArsR-family transcriptional regulator"
FT                   /note="Similar to many e.g. Agrobacterium tumefaciens
FT                   hypothetical protein AGR_C_3686P TR:AAK87788
FT                   (EMBL:AE008120) (142 aa) fasta scores: E(): 1.1e-21, 51.66%
FT                   id in 120 aa. Also similar to BP3466, 43.137% identity
FT                   (43.137% ungapped) in 102 aa overlap."
FT                   /db_xref="GOA:Q7VWQ6"
FT                   /db_xref="InterPro:IPR001845"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWQ6"
FT                   /protein_id="CAE42424.1"
FT                   /translation="MVEYQAPALDRVFHALSDPTRRAMLRRLADGEHNIRALAAPFAMS
FT                   FTAASKHLKVLESAGLVSRRVQGRSHLCRIDAAPLAAIDAWLKFYERFWNARLDMLETL
FT                   LRADAASSVPSHPDQDPTP"
FT   misc_feature    complement(186022..186255)
FT                   /note="HMMPfam hit to PF01022, Bacterial regulatory
FT                   protein, arsR family"
FT   misc_feature    complement(186130..186195)
FT                   /note="Predicted helix-turn-helix motif with score 1024
FT                   (+2.67 SD) at aa 33-54, sequence HNIRALAAPFAMSFTAASKHLK"
FT   CDS             186404..187240
FT                   /transl_table=11
FT                   /locus_tag="BP2146"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar, except at the N-terminus, to Deinococcus
FT                   radiodurans hydrolase-related protein DR1403 TR:Q9RUI3
FT                   (EMBL:AE001985) (277 aa) fasta scores: E(): 3.7e-37, 45.57%
FT                   id in 237 aa"
FT                   /db_xref="InterPro:IPR000073"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWQ5"
FT                   /protein_id="CAE42425.1"
FT                   /translation="MTPPARSSAAAPAQYADVHYADRPMRIEYALLAPERRDAPLLVFL
FT                   HEGLGSLAMWRDWPRRVCDAAGCRGLVYSRYGYGRSTVRPLDESRPIDYLHQQAAQALP
FT                   ALFAALGIDARRDKPVLFGHSDGASIALLYAALCPDAVAGIAVAAPHIYVEDITVANIA
FT                   VALRAYRETTLRDRLARYHDDVDSTFASWTDTWLDPAFRQWNIEAYLPAITCPVLAMQG
FT                   VDDEYGTLEQIRGIRRLAPQTRLLEIQDCGHSPHKDQPELVTRALAGFVGGLRRPA"
FT   misc_feature    186605..187216
FT                   /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold"
FT   CDS             complement(187251..187730)
FT                   /transl_table=11
FT                   /locus_tag="BP2147"
FT                   /product="putative exported protein"
FT                   /note="Similar to e.g. Neisseria meningitidis hypothetical
FT                   protein NMB0783 TR:Q9K039 (EMBL:AE002432) (159 aa) fasta
FT                   scores: E(): 5.5e-15, 44.65% id in 159 aa and Haemophilus
FT                   ducreyi hypothetical protein TR:Q9L7U8 (EMBL:AF219260) (149
FT                   aa) fasta scores: E(): 4.2e-11, 39.66% id in 121 aa"
FT                   /db_xref="InterPro:IPR005180"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWQ4"
FT                   /protein_id="CAE42426.1"
FT                   /translation="MQISRRFPLLARRAALALCLAGAVQAHAQEAAVQRKSDYPFAATV
FT                   ARLQDALRAKGMTIFAVIDHQAAAKQAELDMPPTQVVVYGNPKAGTPLMLAAPDFALEL
FT                   PLKVLVRETASGEVLVVYHPAGTREGMLGLPAGMAQQLAGAERIVDAAVRRAPAD"
FT   misc_feature    complement(187647..187730)
FT                   /note="Signal peptide predicted for BP2147 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.996 between residues 28 and 29"
FT   CDS             187873..188052
FT                   /transl_table=11
FT                   /locus_tag="BP2148"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Rhizobium loti hypothetical protein
FT                   MSR0042 TR:Q98NP7 (EMBL:AP002994) (62 aa) fasta scores:
FT                   E(): 1.2e-11, 67.79% id in 59 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWQ3"
FT                   /protein_id="CAE42427.1"
FT                   /translation="MPAKSKAQQMAAGAALAAKRGESRVSDLKGASRDMYDSMSERELE
FT                   HMAGTARKGKPYHK"
FT   CDS             complement(188182..189156)
FT                   /transl_table=11
FT                   /locus_tag="BP2149"
FT                   /product="putative araC-family transcriptional regulator"
FT                   /note="Similar to many e.g. Agrobacterium tumefaciens
FT                   AGR_PAT_562P TR:AAK90764 (EMBL:AE007908) (340 aa) fasta
FT                   scores: E(): 7e-25, 32.45% id in 265 aa"
FT                   /db_xref="GOA:Q7VWQ2"
FT                   /db_xref="InterPro:IPR018060"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWQ2"
FT                   /protein_id="CAE42428.1"
FT                   /translation="MLGAMKRLALLVPERANIASLENARQGFLAANGFLRERGRAPSFD
FT                   VRLVAATPQVRLDHGRITVQADTVLEAVGEVDLCVVPPIQGDPQPALQENGALIDWLAG
FT                   YYKNGGEVASLCVGAALLAAGGVLDGQRAVVHWAAQSDFGRLFPAVRWVSDRVVLEANG
FT                   IYTSGGAFSAAHLVLHLVDKYTDRETAIWCAKLFQLDWSRQSQLPFVVFVGQKTHGDGV
FT                   VRQVQEHIEANYTERLTVEQLAQRVALGRRTLERRFRHATGNSIVEYVQRIRIEAAKKQ
FT                   LESSRKSVAEVMYEVGYNDTKAFRDIFNKYCGMSPLMYKERYL"
FT   misc_feature    complement(188188..188448)
FT                   /note="HMMPfam hit to PF00165, Bacterial regulatory
FT                   helix-turn-helix proteins, araC family"
FT   misc_feature    complement(188380..188445)
FT                   /note="Predicted helix-turn-helix motif with score 1340
FT                   (+3.75 SD) at aa 238-259, sequence LTVEQLAQRVALGRRTLERRFR"
FT   RBS             189275..189279
FT                   /note="possible RBS"
FT   CDS             189287..189643
FT                   /transl_table=11
FT                   /locus_tag="BP2150"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to e.g. Rhizobium meliloti conserved
FT                   hypothetical protein SMC01560 TR:CAC46890 (EMBL:AL591790)
FT                   (117 aa) fasta scores: E(): 8.1e-22, 52.17% id in 115 aa
FT                   and Escherichia coli hypothetical protein ybaA or b0456
FT                   SW:YBAA_ECOLI (P09161) (117 aa) fasta scores: E(): 4.3e-18,
FT                   46.95% id in 115 aa"
FT                   /db_xref="InterPro:IPR009874"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWQ1"
FT                   /protein_id="CAE42429.1"
FT                   /translation="MDQYVDGFLLSVPNDKLDTYRQMATKAGAIWKEHGALAYCECTGD
FT                   DLDIEGMVSFKTSAAAREGETVVFAWIVYPSRAERDRINAAVMADPRLKEQCVDGVFDC
FT                   KRMAYGGFKTLVNL"
FT   CDS             complement(189633..190508)
FT                   /transl_table=11
FT                   /locus_tag="BP2151"
FT                   /product="putative oxidoreductase"
FT                   /note="Similar to e.g. Streptomyces coelicolor putative
FT                   oxidoreductase SCF55.14 TR:Q9RJQ0 (EMBL:AL132991) (289 aa)
FT                   fasta scores: E(): 1.4e-35, 46.12% id in 284 aa and
FT                   Pseudomonas chlororaphis phenazine biosynthesis protein
FT                   PhzF phzF or phzC SW:PHZF_PSECL (Q51520) (278 aa) fasta
FT                   scores: E(): 1.4e-12, 31.78% id in 280 aa"
FT                   /db_xref="GOA:Q7VWQ0"
FT                   /db_xref="InterPro:IPR003719"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWQ0"
FT                   /protein_id="CAE42430.1"
FT                   /translation="MQTTTSLIASVRRIAAFSDGARGGNPAGVHVAEVLPDAMTMQQMA
FT                   AEIDYSETVFAAPAYGGWRVRYFAPEAEVPFCGHATIALGAVLAEQEGDGVFALTTNHA
FT                   NITVEGRRQGGLYSAALQSPRTRSAPLEAAVRDEALALFGYTPADLDSRLPPAYAEAGA
FT                   AHLILPLNSRERLAAMRYDLAAGRAFMKRTGVVTIAWVHAESATLLHARNAFAAGGVYE
FT                   DPATGAAAAALAGHLRDSGWLRAGAIEILQGFDMGVPARLRAEYGPEPGSSVRVAGTAH
FT                   ALARQPALID"
FT   misc_feature    complement(189636..190490)
FT                   /note="HMMPfam hit to PF02567, Phenazine biosynthesis-like
FT                   protein"
FT   CDS             190607..191491
FT                   /transl_table=11
FT                   /locus_tag="BP2152"
FT                   /product="putative lysR-family transcriptional regulator"
FT                   /note="Similar to many e.g. Burkholderia cepacia
FT                   2,2-dialkylglycine decarboxylase repressor protein dgdR
FT                   SW:DGDR_BURCE (P16931) (293 aa) fasta scores: E(): 4e-24,
FT                   32.62% id in 282 aa"
FT                   /db_xref="GOA:Q7VWP9"
FT                   /db_xref="HSSP:1IXC"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWP9"
FT                   /protein_id="CAE42431.1"
FT                   /translation="MSRNIDTALLRAFLAVHDTGSLTAAAALLHLTQSAVSQQLQRLEA
FT                   LFGRTLLERRRSGAALTGDGARLLGRAREMVRLNDELMQHMTGAGCVGAVRLGVPHDLI
FT                   GTHLPGLLRAYSLRYPDVDISLISATSPELLEQVRRRKLDLTLAEEPIGAAAGGERLAV
FT                   DRVVWLAAPGGQAWRKNPLPVSLVSDACAFRPVLADALDGGRIPWRSVFENGNADATLT
FT                   TVRLDLAVTASLLSVAPADLQVLDAASGLPALPDYAINLYIAPGERSQAVEEMARHIRQ
FT                   AYQERRPAYAAAA"
FT   misc_feature    190625..191047
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family"
FT   misc_feature    190664..190729
FT                   /note="Predicted helix-turn-helix motif with score 1984
FT                   (+5.94 SD) at aa 20-41, sequence GSLTAAAALLHLTQSAVSQQLQ"
FT   misc_feature    190667..190759
FT                   /note="ScanRegExp hit to PS00044, Bacterial regulatory
FT                   proteins, lysR family signature."
FT   CDS             complement(191513..192808)
FT                   /transl_table=11
FT                   /locus_tag="BP2153"
FT                   /product="putative exported protein"
FT                   /note="Similar to e.g. Xylella fastidiosa hypothetical
FT                   protein Xf1278 TR:Q9PDV1 (EMBL:AE003961) (451 aa) fasta
FT                   scores: E(): 9.3e-87, 56.77% id in 421 aa and Escherichia
FT                   coli hypothetical protein YjiN yjiN or b4336 SW:YJIN_ECOLI
FT                   (P39385) (426 aa) fasta scores: E(): 1.1e-42, 36.69% id in
FT                   417 aa"
FT                   /db_xref="InterPro:IPR007383"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWP8"
FT                   /protein_id="CAE42432.1"
FT                   /translation="MSAPADPRLAQLRRMQRWALALLAAMIAGFVTSHLMGGQGAWAWV
FT                   RAFCEAATVGALADWFAVVALFRRPLGLPIPHTAIIPANKARIGDNLALFVRDHFLDPA
FT                   TLLEKLRVFDPAARLGHWLADPRQTRSLGQGARQVALQALDLLDEQAVSRAIQGFAVAQ
FT                   LRRWDAARTAGEVLALLTRDGRHQELLDAALHRLGDYLGEEDIRQRASALLVKFARKEW
FT                   PRIIAAVDVIGSVEGIADNLADRMARALVDELRDVLSRPDHPVRRNYEAWVADYIARLR
FT                   DDPELAGQVEALKQRLIDDPRVQEYALGLWRDIHAVLRRDLEAEDSALARHLEDALQAL
FT                   GQRLSRDPELRRAVNEHVLDSARKLTDSLRSGVTEHISRTVKNWDERHLVRELELSVGR
FT                   DLQYIRFNGTLVGGLIGLALHAGVLLVQRAGG"
FT   misc_feature    complement(192680..192808)
FT                   /note="Signal peptide predicted for BP2153 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.945) with cleavage site
FT                   probability 0.407 between residues 43 and 44"
FT   CDS             complement(join(192805..193161,193170..193625))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2154"
FT                   /product="putative LysR-family transcriptional regulator
FT                   (pseudogene)"
FT                   /note="Pseudogene. This CDS appears to contain a deletion
FT                   that has lead to a shift in reading frame around codon 152.
FT                   The sequence has been checked and believed to be correct.
FT                   Similar to e.g. Pseudomonas aeruginosa probable
FT                   transcriptional regulator PA0784 TR:Q9I5F4 (EMBL:AE004513)
FT                   (309 aa) fasta scores: E(): 6.9e-31, 54.16% id in 288 aa
FT                   and Escherichia coli glycine cleavage system
FT                   transcriptional activator GcvA or B2808 SW:GCVA_ECOLI
FT                   (P32064) (305 aa) fasta scores: E(): 3.1e-19, 34.27% id in
FT                   283 aa"
FT                   /db_xref="PSEUDO:CAE42433.1"
FT   variation       complement(193170..193172)
FT                   /note="large deletion in pertussis relative to
FT                   parapertussis around this codon"
FT   misc_feature    complement(193191..193607)
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family"
FT   misc_feature    complement(193473..193565)
FT                   /note="ScanRegExp hit to PS00044, Bacterial regulatory
FT                   proteins, lysR family signature."
FT   misc_feature    complement(193503..193568)
FT                   /note="Predicted helix-turn-helix motif with score 1608
FT                   (+4.66 SD) at aa 29-50, sequence LSFKGAAAELHVTPTAVSHQIR"
FT   CDS             193757..194407
FT                   /transl_table=11
FT                   /locus_tag="BP2156"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Bacillus subtilis hypothetical 20.5 kDa
FT                   protein ywqN TR:P96726 (EMBL:Z92952) (181 aa) fasta scores:
FT                   E(): 5e-08, 27.07% id in 181 aa, and to Clostridium
FT                   acetobutylicum multimeric flavodoxin wrba family protein
FT                   cac3334 TR:Q97DY6 (EMBL:AE007830) (178 aa) fasta scores:
FT                   E(): 6.8e-07, 29.78% id in 188 aa"
FT                   /db_xref="GOA:Q7VWP7"
FT                   /db_xref="InterPro:IPR003680"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWP7"
FT                   /protein_id="CAE42434.1"
FT                   /translation="MDSSQVPNPVLVLVGSPRRDGNSALLAQAVAEGARQSGAAATLLF
FT                   LDDYIAGFLTDEKEADARRPDDRYGELFFDHFLPARAVVLCTPVYWYGMSAQAKAFFDR
FT                   SFTYYSASHPRHAEVLRRMTGKRLALAVSSEETYPGAALGIVHQLQEFTRYTHSQFVGM
FT                   VHGAGNRRGEVAHDPRRPLQAAHRLGHDLLSLPYSDYRIDSPRDHQVWPGAPA"
FT   CDS             complement(194495..196015)
FT                   /transl_table=11
FT                   /gene="acoD"
FT                   /locus_tag="BP2157"
FT                   /product="aldehyde dehydrogenase"
FT                   /EC_number="1.2.1.3"
FT                   /note="Similar to Alcaligenes eutrophus acetaldehyde
FT                   dehydrogenase II AcoD SW:DHA2_ALCEU (P46368) (506 aa) fasta
FT                   scores: E(): 1.1e-155, 74.65% id in 509 aa"
FT                   /db_xref="GOA:Q7VWP6"
FT                   /db_xref="HSSP:1CW3"
FT                   /db_xref="InterPro:IPR016162"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWP6"
FT                   /protein_id="CAE42435.1"
FT                   /translation="MDLSDLKKLGLDVAYPFKEQYENYIGGQWVAPAGGEYFDNLSPIT
FT                   GQPFCRVPRSGAADVELALDAAHRACAAWARTSPAERANILLRIADRIEGQLPMLAVAE
FT                   SIDNGKPLRETTAADLPLAIDHFRYFAGCIRAQEGAISEIDANTVAYHFHEPIGVVGQI
FT                   IPWNFPLLMVAWKLAPALAAGCVVVLKPAEQTPASILVLAELIGDLLPPGVLNVVNGYG
FT                   KEAGQALATSKRIAKIAFTGSTPVGKHILHAAADNLIPATVELGGKSPNIFFDDVMDHD
FT                   DEFLDKALEGLAMFALNQGEVCTCPSRILIQESIYERFIEKAIARVQSIKTGHPLDAGT
FT                   MVGAQVSQVQMDKILSYIDIGRQEGAQCLTGGARNDMLPGGLDQGFYVQPTMLLGKNSM
FT                   RIFQEEIFGPVAAVATFKDEEEAIAMANDTFYGLGAGVWSRDGARAYRVGRGIEAGRVW
FT                   TNCYHLYPAHAAFGGYKQSGIGREAALSNYQQTKCLLVSYSAKALGFF"
FT   misc_feature    complement(194522..195934)
FT                   /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase
FT                   family"
FT   misc_feature    complement(195095..195130)
FT                   /note="ScanRegExp hit to PS00070, Aldehyde dehydrogenases
FT                   cysteine active site."
FT   misc_feature    complement(195206..195229)
FT                   /note="ScanRegExp hit to PS00687, Aldehyde dehydrogenases
FT                   glutamic acid active site."
FT   CDS             196273..198138
FT                   /transl_table=11
FT                   /locus_tag="BP2158"
FT                   /product="putative sigma-54-dependent transcriptional
FT                   regulator"
FT                   /note="Similar to Yersinia pseudotuberculosis putative
FT                   transcriptional regulator TR:Q9AGD7 (EMBL:AF335466) (614
FT                   aa) fasta scores: E(): 1.1e-60, 39.49% id in 628 aa, and to
FT                   Alcaligenes eutrophus acetoin catabolism regulatory protein
FT                   acoR SW:ACOR_ALCEU (P28614) (668 aa) fasta scores: E():
FT                   1e-36, 37.26% id in 628 aa"
FT                   /db_xref="GOA:Q7VWP5"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWP5"
FT                   /protein_id="CAE42436.1"
FT                   /translation="MPGYQLSASGQHLPSTQAAAPIVRSWERCASAAADLHDDPVALRH
FT                   GDLQERLEQHACVLRAAQPEIETLAGMVASASSLVLLADASGVILQASGNTGFLQRADH
FT                   VALRPGVSWAENHRGTNAIGTALIEAAALRVHGAEHFLRRNQILSCHAAPIRSPRGEIL
FT                   GVLDISGDAGRMHAYALSLASMCARQVANRVIEQAGERCLYLVFHKQASLLDSVERGLL
FT                   LIEDERIVGANDAAVALLGATWPALLDQPLDGWLVDWRAVARTPGRVHTPQGAPFHAVL
FT                   RQGGHARSLPAPPRPPRAMPAQAPEETLPALAPALQAGFERARRALDGGLSVLLQGETG
FT                   AGKEVYAQHLYRRSIWRDGPFVAVNCGALPESLIEAELFGYEPGAYTGARRLGARGRLR
FT                   EADGGVLFLDEIGDMPLALQTRLLRALQERMVQPLGADKAVPVNFGLVSATHRDLDAMI
FT                   AAGEFRADLYYRLHDYAVPLPRLRERDDLRPFICAALRALDDTPAGLTLADDALDALAA
FT                   YAWPGNYRQLRSVLRTLALFHPPGSLIHRHHLPAAIAAPAVHAADGAAPPPSVVAPPAA
FT                   ATLRDAGLHRIDQALARHGGNIAGAAHELGIHRSTLYRHLARQRG"
FT   misc_feature    197197..197886
FT                   /note="HMMPfam hit to PF00158, Sigma-54 interaction domain"
FT   misc_feature    197269..197310
FT                   /note="ScanRegExp hit to PS00675, Sigma-54 interaction
FT                   domain ATP-binding region A signature."
FT   misc_feature    198058..198123
FT                   /note="Predicted helix-turn-helix motif with score 1941
FT                   (+5.80 SD) at aa 596-617, sequence GNIAGAAHELGIHRSTLYRHLA"
FT   CDS             complement(join(198135..198221,198225..199085))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2159"
FT                   /product="transposase (Pseudogene)"
FT                   /note="Pseudogene. Transposase for IS481 element. This
FT                   transposase appears to have an in-frame stop codon."
FT                   /db_xref="PSEUDO:CAE42437.1"
FT   repeat_region   198135..198166
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   complement(198135..199187)
FT   misc_feature    complement(198225..198704)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   repeat_region   complement(199156..199187)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(join(199322..200041,200045..200065))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2160"
FT                   /product="conserved hypothetical protein (pseudogene)"
FT                   /note="Pseudogene. This CDS contains an in-frame TAG stop
FT                   codon. The sequence has been checked and believed to be
FT                   correct. Similar to Ralstonia solanacearum probable
FT                   transmembrane protein Rsc2670 or Rs04535 SWALL:CAD16377
FT                   (EMBL:AL646071) (240 aa) fasta scores: E(): 6.3e-36, 51.48%
FT                   id in 235 aa, and to Pseudomonas aeruginosa hypothetical
FT                   protein Pa4013 SWALL:Q9HX14 (EMBL:AE004818) (236 aa) fasta
FT                   scores: E(): 4.5e-23, 40.17% id in 229 aa"
FT                   /db_xref="PSEUDO:CAE42438.1"
FT   variation       complement(200042..200044)
FT                   /note="In-frame TAG stop codon in pertussis; TGG in
FT                   parapertussis and bronchiseptica"
FT   CDS             complement(200058..200417)
FT                   /transl_table=11
FT                   /locus_tag="BP2161"
FT                   /product="putative integral membrane protein"
FT                   /note="Similar to Clostridium acetobutylicum predicted
FT                   membrane protein yohj family cac0612 TR:Q97LE9
FT                   (EMBL:AE007576) (117 aa) fasta scores: E(): 3.4e-06, 32.99%
FT                   id in 97 aa"
FT                   /db_xref="GOA:Q7VWP4"
FT                   /db_xref="InterPro:IPR005538"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWP4"
FT                   /protein_id="CAE42439.1"
FT                   /translation="MQALTGFTWLLALQALGEACSRLLHFPIPGPVTGMLLLLVALRWP
FT                   PVREPVALAAQFLLSHLSLLFVPVGVGVMTHIALLAEYGLRMAAVIVLSTLAGMAATYW
FT                   ALRVGRSATPEADDA"
FT   misc_feature    complement(join(200100..200165,200181..200246,
FT                   200283..200348))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BP2161 by TMHMM2.0 at aa 23-45, 57-79 and 84-106"
FT   CDS             complement(200405..201841)
FT                   /transl_table=11
FT                   /locus_tag="BP2162"
FT                   /product="putative biotin synthesis protein"
FT                   /note="N-terminal region similar to many eg.Escherichia
FT                   coli biotin synthesis protein BioC or b0777 SW:BIOC_ECOLI
FT                   (P12999) (251 aa) fasta scores: E(): 3.4e-13, 33.98% id in
FT                   256 aa. C-terminal region similar to many eg. Bacillus
FT                   subtilis dethiobiotin synthetase bioD SW:BIOD_BACSU
FT                   (P53558) (231 aa) fasta scores: E(): 1.4e-09, 34.59% id in
FT                   211 aa"
FT                   /db_xref="GOA:Q7VWP3"
FT                   /db_xref="HSSP:1DAI"
FT                   /db_xref="InterPro:IPR013217"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWP3"
FT                   /protein_id="CAE42440.1"
FT                   /translation="MNTRSTPTIGQRFDRAAARYETHAEVQRHAAEQLAERIAALPLPA
FT                   EPRILEIGCGTGLLTRALARRLGRADWTITDIAPAMLAAQQAGPPPAGRVRHQLVDGEH
FT                   PAGLPGGYDLICSSLAVQWFGDLDAGLARLAGLLAPGGLLAIATLAEHTFSEWRAAHQA
FT                   HGLHAATPAYPPAERIGRTLAGLRGGITREAYRQRHPDALHFVRSLKAIGATAPAAGHA
FT                   PLSPAAFRRVLAQFDRQGNHVTYDLAYGLWRKQAPGVFVTGTDTGVGKTLASAILARAW
FT                   RAHYWKPLQTGVAEEPGDTETVAALAGLEPARLHPPAHVLQAPLSPWAAAPLEGVTLDA
FT                   AAIAPPQVDGPLVIEGAGGLYVPIDERHMMIDLIARLGMPVVLAARSGLGTINHTLLSL
FT                   HALRERRLPVLGVIMLGEPSAGNRHAIEHFGGVPVLAQIPRLARVDAEAVEAWAARIPP
FT                   LADCLARRWPDPQETPACRP"
FT   CDS             complement(201838..202491)
FT                   /transl_table=11
FT                   /locus_tag="BP2163"
FT                   /product="hypothetical protein"
FT                   /note="Weakly similar to predicted hydrolases eg.
FT                   Streptomyces coelicolor putative hydrolase SCE87.22C
FT                   TR:Q9RKB6 (EMBL:AL132674) (314 aa) fasta scores: E():
FT                   0.017, 30.62% id in 258 aa, and to Streptomyces peucetius
FT                   10-carbomethoxy-13-deoxycarminomycin esterase DnrP
FT                   TR:Q54809 (EMBL:L40425) (298 aa) fasta scores: E(): 2.8,
FT                   31.25% id in 112 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWP2"
FT                   /protein_id="CAE42441.1"
FT                   /translation="MSAPRPLLRFEHGWAHDAGVWAPLRAALADWPQQAADAGYFGPAV
FT                   EPPADGAPVVAIGHSLGFLKILQSPAPGCIAYIAINGFARFAGGADYPPGVAPRLLERM
FT                   LARLELDPAAVVDDFRRRAGSAPHAGTPRPEPLRHDLRRLREADERQALAASRLPLLAL
FT                   AGTADPIVPPALTRAQFGACAGLHWRDGGGHLLPASDPDWCAGRIRAFLAGLPA"
FT   CDS             complement(202488..203681)
FT                   /transl_table=11
FT                   /locus_tag="BP2164"
FT                   /product="putative 8-amino-7-oxononanoate synthase"
FT                   /note="Similar to biotin synthesis enzymes eg. Kurthia
FT                   sp538-KA26. KapA synthase-II BioFII TR:Q9AJM7
FT                   (EMBL:AB045875) (398 aa) fasta scores: E(): 2.6e-49, 41.73%
FT                   id in 381 aa, and to Bacillus subtilis
FT                   8-amino-7-oxononanoate synthase BioF SW:BIOF_BACSU (P53556)
FT                   (389 aa) fasta scores: E(): 7.3e-44, 38.24% id in 387 aa"
FT                   /db_xref="GOA:Q7VWP1"
FT                   /db_xref="HSSP:1BS0"
FT                   /db_xref="InterPro:IPR015421"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VWP1"
FT                   /protein_id="CAE42442.1"
FT                   /translation="MSKLDSLFTAALEQAAQRQVRRRLRHAAATPPGRLALDGRTLVNF
FT                   SSNDYLGLARHPLLAERASLWATRHGAGAQASRLVCGNLDLHEQVEAKLARLKGTEAAL
FT                   LLASGWQANAAVLPALFKAAAAQGEPQVYTDRLNHASLHHGCQAAGVRQIRFRHNDLAH
FT                   LEHLLAERAGAPGARFIVTESVFSMDGDRADVPALAALAARHHAFLYLDEAHATGVLGP
FT                   RGMGLAGLAPGGVDLAMGTFSKGLGSFGAYVAGSRALCDYLVNACSGFIYTTALPPAVL
FT                   GAIDAALDLVPRLDQARATLQGHGERLRASLAAQGIDCGASSTQIVPAIIGDAGHALAL
FT                   AAELERRGLLAVAIRPPTVPAGTSRLRIALSAAHGEAELDQLIEALAAGWRAVRQAA"
FT   misc_feature    complement(202581..203438)
FT                   /note="HMMPfam hit to PF00222,"
FT   misc_feature    complement(202932..202961)
FT                   /note="ScanRegExp hit to PS00599, Aminotransferases
FT                   class-II pyridoxal-phosphate attachment site."
FT   CDS             203785..205059
FT                   /transl_table=11
FT                   /gene="bioA"
FT                   /locus_tag="BP2165"
FT                   /product="adenosylmethionine-8-amino-7-oxononanoate
FT                   aminotransferase"
FT                   /EC_number="2.6.1.62"
FT                   /note="Similar to Escherichia coli
FT                   adenosylmethionine-8-amino-7-oxononanoate aminotransferase
FT                   BioA or b0774 SW:BIOA_ECOLI (P12995) (429 aa) fasta scores:
FT                   E(): 2.1e-77, 50.48% id in 414 aa, and to Caulobacter
FT                   crescentus adenosylmethionine-8-amino-7-oxononanoate
FT                   aminotransferase cc1577 TR:Q9A7Z0 (EMBL:AE005832) (400 aa)
FT                   fasta scores: E(): 2.6e-99, 64.48% id in 397 aa"
FT                   /db_xref="GOA:Q7VWP0"
FT                   /db_xref="HSSP:1DTY"
FT                   /db_xref="InterPro:IPR015421"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWP0"
FT                   /protein_id="CAE42443.1"
FT                   /translation="MSNTTPAWMAQGYPHIWLPYAQMKTAAPPLPVVRSHGSLLELADG
FT                   RTLIDGVAAWWTACHGYNHPHIAQAVREQLDRMPHVMFGGLAHEPALNLASRLSALLGP
FT                   GLERVFYTDSGSVAVEVAMKMAVQFWLNQGERGRTRFVAFRGGYHGDTFGTMAVCDPDE
FT                   GMHAMFRGLLPEHDVLALPRDEAALAALQAHLERHAGRIAGMLVEPLVQGAGGMLLHDP
FT                   QVLARLRELADRYGILLIFDEIFTGFGRTGTMFAFEQAGVRPDIVTLSKALTGGTLPLA
FT                   ATVASARVFEGFWSDDPGHALMHGPTFMGCALACAAANASLDLFEREPRLRQVAALEQA
FT                   LRAGLEPCRDLPWVRDVRVLGAIGVIELDGIGARDDLRRRLVEAGVWVRPFGNIVYLTP
FT                   AFTIAEDELQALLEAVRQVVAERRP"
FT   misc_feature    203893..204987
FT                   /note="HMMPfam hit to PF00202, Aminotransferase class-III"
FT   misc_feature    204499..204612
FT                   /note="ScanRegExp hit to PS00600, Aminotransferases
FT                   class-III pyridoxal-phosphate attachment site. Confirmed by
FT                   InterPro eMOTIF pattern match."
FT   CDS             complement(205056..206006)
FT                   /transl_table=11
FT                   /locus_tag="BP2166"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTA3"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTA3"
FT                   /protein_id="CAE42444.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS"
FT   repeat_region   205056..205087
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   complement(205056..206108)
FT   misc_feature    complement(205092..205625)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   misc_feature    complement(205683..205748)
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   repeat_region   complement(206077..206108)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             206173..207147
FT                   /transl_table=11
FT                   /locus_tag="BP2167"
FT                   /product="putative integral membrane protein"
FT                   /note="Similar to Vibrio cholerae cation transport ATPase,
FT                   E1-E2 family VC1437 TR:Q9KS24 (EMBL:AE004222) (790 aa)
FT                   fasta scores: E(): 5.4e-11, 29.43% id in 316 aa, and to
FT                   Pseudomonas aeruginosa probable cation-transporting p-type
FT                   ATPase PA1549 TR:Q9I3G8 (EMBL:AE004583) (811 aa) fasta
FT                   scores: E(): 9.6e-11, 39.24% id in 158 aa"
FT                   /db_xref="GOA:Q7VWN9"
FT                   /db_xref="InterPro:IPR008250"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWN9"
FT                   /protein_id="CAE42445.1"
FT                   /translation="MRPTSILAVPADLPGADRQARRHALVRLGVAWLAMMQVMMFAWPG
FT                   YVRNDGIPADALATLDWAIVLMNWAALLMTVPVVLYCAWPIWRGAAGGLRRGRAGMDAP
FT                   VALGIVAAFVPSVHATWTGRGEVYFDSVTMFVAFLLTARYLELCARQACGASALATPLV
FT                   RRLHQAGGELGAAADRLATRFVFVQVALALAAGEAWTQIDAAHAVPVMVALLVMSCPCA
FT                   MSMAVPSAMACAHSALLARPEATTAQGDALLAAAARVARQNLYGSLAWHLLMTPLALAG
FT                   WVAPWLAAITMLLSSLAVAGNAWRLRRHRWDAAPAAAVAQPAP"
FT   misc_feature    join(206245..206313,206356..206424,206485..206538,
FT                   206551..206607,206800..206868,207004..207072)
FT                   /note="6 probable transmembrane helices predicted for
FT                   BP2167 by TMHMM2.0 at aa 25-47, 62-84, 105-122, 127-145,
FT                   210-232 and 278-300"
FT   CDS             207144..207287
FT                   /transl_table=11
FT                   /locus_tag="BP2168"
FT                   /product="putative outer membrane protein"
FT                   /note="Similar to Neisseria meningitidis (serogroup A), and
FT                   putative inner membrane protein NMA1716 or NMB1516
FT                   TR:Q9JR08 (EMBL:AL162756) (62 aa) fasta scores: E():
FT                   0.0012, 36.17% id in 47 aa, and to Caulobacter crescentus
FT                   cytochrome oxidase maturation protein, cbb3-type cc1408
FT                   TR:Q9A8E6 (EMBL:AE005815) (55 aa) fasta scores: E(): 0.68,
FT                   36.95% id in 46 aa"
FT                   /db_xref="InterPro:IPR004714"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWN8"
FT                   /protein_id="CAE42446.1"
FT                   /translation="MSILYLLLPLSLAFVLAIGVALWWAVFSGQYDDTEDQGAAILRDN
FT                   DN"
FT   misc_feature    207144..207227
FT                   /note="Signal peptide predicted for BP2168 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.973) with cleavage site
FT                   probability 0.394 between residues 28 and 29"
FT   CDS             join(207412..208071,208071..208898)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2169"
FT                   /product="probable cytochrome C oxidase subunit
FT                   (Pseudogene)"
FT                   /EC_number="1.9.3.1"
FT                   /note="Pseudogene. This CDS appears to have a frameshift
FT                   mutation following codon 220. The sequence has been checked
FT                   and believed to be correct. Strongly similar to many eg.
FT                   Pseudomonas aeruginosa probable cytochrome oxidase subunit
FT                   PA1557 TR:Q9I3G0 (EMBL:AE004584) (475 aa) fasta scores:
FT                   E(): 5.7e-145, 74.5% id in 455 aa"
FT                   /db_xref="PSEUDO:CAE42447.1"
FT   misc_feature    join(207481..208071,208071..208721)
FT                   /note="HMMPfam hit to PF00115, Cytochrome C and Quinol
FT                   oxidase polypeptide I"
FT   misc_feature    join(208033..208071,208071..208199)
FT                   /note="ScanRegExp hit to PS00077, Heme-copper oxidase
FT                   catalytic subunit, copper B binding region signature.
FT                   Confirmed by InterPro eMOTIF pattern match."
FT   variation       208070
FT                   /note="(C)1 in pertussis; (C)2 in parapertussis and
FT                   bronchiseptica"
FT   CDS             208909..209571
FT                   /transl_table=11
FT                   /locus_tag="BP2170"
FT                   /product="probable cytochrome C oxidase subunit"
FT                   /note="Similar to many eg. Pseudomonas aeruginosa probable
FT                   cytochrome C oxidase subunit PA1553 TR:Q9I3G4
FT                   (EMBL:AE004583) (203 aa) fasta scores: E(): 2.1e-49, 64.14%
FT                   id in 198 aa"
FT                   /db_xref="GOA:Q7VWN7"
FT                   /db_xref="InterPro:IPR009056"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWN7"
FT                   /protein_id="CAE42448.1"
FT                   /translation="MAQKQHGFFSHQTLEKNIGLMIIASILVVSVAGLVQIIPLFFQHS
FT                   TTQAMPGVEPYEPLQLMGRDVYIREGCVGCHSQQVRTLQAEVQRYGPYSVAGESVFDHP
FT                   FLWGSKRTGPDLARVGERYSDEWHRIHLRDPRAVVPESNMPAYPWLQHADLTGQNVAQR
FT                   MQALRRLGVPYTDEAIAAAPAAIAGKTEEDALVAYLQALGVGARRGAASEPQRAAGG"
FT   misc_feature    208939..209553
FT                   /note="HMMPfam hit to PF02433, Cytochrome C oxidase,
FT                   mono-heme subunit/FixO"
FT   misc_feature    208966..209034
FT                   /note="1 probable transmembrane helix predicted for BP2170
FT                   by TMHMM2.0 at aa 20-42"
FT   misc_feature    209122..209139
FT                   /note="ScanRegExp hit to PS00190, Cytochrome c family
FT                   heme-binding site signature."
FT   CDS             209574..209750
FT                   /transl_table=11
FT                   /locus_tag="BP2171"
FT                   /product="putative cytochrome C oxidase subunit
FT                   (periplasmic protein)"
FT                   /note="Similar to Vibrio cholerae cytochrome C oxidase,
FT                   subunit CcoQ VC1440 TR:Q9KS21 (EMBL:AE004222) (54 aa) fasta
FT                   scores: E(): 0.25, 34.78% id in 46 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWN6"
FT                   /protein_id="CAE42449.1"
FT                   /translation="MMGYLSALITVLSMGTFLGIVWWAWSSHRQSANRESALLPFALPD
FT                   EDGPAQQDGAMQP"
FT   misc_feature    209574..209660
FT                   /note="Signal peptide predicted for BP2171 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.767) with cleavage site
FT                   probability 0.380 between residues 29 and 30"
FT   CDS             209747..210685
FT                   /transl_table=11
FT                   /locus_tag="BP2172"
FT                   /product="putative cytochrome C oxidase subunit"
FT                   /note="Similar to Neisseria meningitidis cytochrome C
FT                   oxidase, subunit III NMB1723 TR:Q9JY60 (EMBL:AE002522) (365
FT                   aa) fasta scores: E(): 1.3e-51, 44.82% id in 319 aa"
FT                   /db_xref="GOA:Q7VWN5"
FT                   /db_xref="InterPro:IPR009056"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWN5"
FT                   /protein_id="CAE42450.1"
FT                   /translation="MSDFVNGFWSYFIGIIAIGGIVWCVWLLYSQRRWLSTRPAGGVVE
FT                   DTGHVWDGDLTELNNPVPRWWTWMYLLTCVFALGYLVLFPGVGSYQGTLGYTSVGEVKQ
FT                   KQAELAERVKPVYERFGGMTPEQLVADAPAREIGQRLFLNTCAQCHGSDAKGSTSFPNL
FT                   TDGDWLYGGTPEIIAETIAKGRHGVMPPWKGVIDPRMAGDIAHYVRSLSGLAVDPVRVF
FT                   RGKREFANYCVACHGVDGKGNQALGAPNLTDDVWLYGSSEASIVRTILDGRDNRMPAHE
FT                   EVLTPEQIKLLSAWVWGLSNQAPAKAAEAAR"
FT   misc_feature    join(209765..209833,209939..210007)
FT                   /note="2 probable transmembrane helices predicted for
FT                   BP2172 by TMHMM2.0 at aa 7-29 and 65-87"
FT   misc_feature    210134..210382
FT                   /note="HMMPfam hit to PF00034, Cytochrome c"
FT   misc_feature    210182..210199
FT                   /note="ScanRegExp hit to PS00190, Cytochrome c family
FT                   heme-binding site signature."
FT   misc_feature    210392..210646
FT                   /note="HMMPfam hit to PF00034, Cytochrome c"
FT   misc_feature    210440..210457
FT                   /note="ScanRegExp hit to PS00190, Cytochrome c family
FT                   heme-binding site signature."
FT   CDS             210777..212267
FT                   /transl_table=11
FT                   /locus_tag="BP2173"
FT                   /product="putative ferredoxin"
FT                   /note="Similar to many predicted ferredoxins eg. Neisseria
FT                   meningitidis putative ferredoxin NMA1668 TR:Q9JTR2
FT                   (EMBL:AL162756) (498 aa) fasta scores: E(): 2.7e-76, 44.93%
FT                   id in 494 aa"
FT                   /db_xref="GOA:Q7VWN4"
FT                   /db_xref="InterPro:IPR017900"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWN4"
FT                   /protein_id="CAE42451.1"
FT                   /translation="MTQGTPAAPGGPSDPQPPAWRPAPGPRRADGETLEQTLADVRSKI
FT                   YPRSVSGIFARWRVVFVVLTQLIFYGLPWLQWNGRQAVLFDLGARKFYLFGLVLWPQDV
FT                   VYLAVLLVISALALFLFTAVAGRLFCGYACPQTVYTEIFMWIERRVEGDRIARIRLDEA
FT                   PWSARKLRIKATKHVLWLAVAWWTGSTFIGYFAPIRELGHQLFALQLGGWQWFWMLFYG
FT                   FATWGNAGFMRESVCKYMCPYARFQSVMVDHDTFVVTYDKRRGEPRGGRSRKIDHKAAG
FT                   LGDCVDCSLCVQVCPTGIDIRDGLQYMCIGCGACIDVCGQVMDKMRYAPGLIRYTSERA
FT                   VDEGLDGRRARSHLLRPRVLIYGGLILALAIAFAVSLGMRNPLRVNVIRDRGALGREVA
FT                   GGLVENVYRLQIINTSDQPLRLQLTAEGIDGLAVLAGRDGSDVVEVEAAANKLVPVVLR
FT                   APRGDTAPGAHAIVVQARSQDTGRVLEVREPASFYLPE"
FT   misc_feature    join(210936..211004,211086..211154,211308..211370,
FT                   211413..211472,211851..211910)
FT                   /note="5 probable transmembrane helices predicted for
FT                   BP2173 by TMHMM2.0 at aa 54-76, 104-126, 178-198, 213-232
FT                   and 359-378"
FT   misc_feature    211608..211679
FT                   /note="HMMPfam hit to PF00037, 4Fe-4S binding domain"
FT   misc_feature    211629..211664
FT                   /note="ScanRegExp hit to PS00198, 4Fe-4S ferredoxins,
FT                   iron-sulfur binding region signature. Confirmed by InterPro
FT                   eMOTIF pattern match."
FT   misc_feature    211701..211736
FT                   /note="ScanRegExp hit to PS00198, 4Fe-4S ferredoxins,
FT                   iron-sulfur binding region signature. Confirmed by InterPro
FT                   eMOTIF pattern match."
FT   CDS             212353..212505
FT                   /transl_table=11
FT                   /locus_tag="BP2174"
FT                   /product="putative lipoprotein"
FT                   /note="similar to Ralstonia solanacearum probable
FT                   lipoprotein SWALL:Q8XZW4 (EMBL:AL646063) Rsc1281 or
FT                   Rs02794; length 76 aa; id=54.34%; ungapped id=56.81%;
FT                   E()=3.4e-05; ; 46 aa overlap; query 1-45 aa; subject 24-68
FT                   aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWN3"
FT                   /protein_id="CAE42452.1"
FT                   /translation="MAGPLVAIIGCVITIYLAMTRYGDQPIAEGAVKRGLVVERVAAPA
FT                   ADARR"
FT   CDS             212519..212758
FT                   /transl_table=11
FT                   /locus_tag="BP2175"
FT                   /product="putative inner membrane protein"
FT                   /note="No significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWN2"
FT                   /protein_id="CAE42453.1"
FT                   /translation="MRWRSLMWILWPSFLAAGVGSALIFALIDPLDVAIFGQVPTSRTG
FT                   FYTVSFFVLWLVTALSSTVTAYLMPPGGQDETPF"
FT   misc_feature    212519..212596
FT                   /note="Signal peptide predicted for BP2175 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.982) with cleavage site
FT                   probability 0.623 between residues 26 and 27"
FT   misc_feature    join(212537..212605,212648..212716)
FT                   /note="2 probable transmembrane helices predicted for
FT                   BP2175 by TMHMM2.0 at aa 7-29 and 44-66"
FT   CDS             212854..213597
FT                   /transl_table=11
FT                   /locus_tag="BP2176"
FT                   /product="putative inner membrane protein"
FT                   /note="No significant database matches"
FT                   /db_xref="GOA:Q7VWN1"
FT                   /db_xref="InterPro:IPR018130"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWN1"
FT                   /protein_id="CAE42454.1"
FT                   /translation="MDALHVVVVAGAVVAGFVQGLSGFGYGLTAMSVWAWSIDPRLAAA
FT                   LVVFGSLTGQLIAAFSVRRGFDWRRLLPFLLGGLVGIPIGVRILPMLDVHMFKALLGCF
FT                   LVLWCPLMLAVKYLPRITAGGRLADAVVGGLGGVMGGIGGFTGTLPTLWCTLRGFARDE
FT                   QRSIIQNFNLGTLLVTMATYVGTGIVTADMLPLFGLVALAMLIPTVLGTRLYLGISDQA
FT                   FRRIVLGLLTLSGVAMLASSLPRLL"
FT   misc_feature    join(212866..212934,212977..213045,213064..213126,
FT                   213139..213207,213241..213309,213352..213420,
FT                   213433..213501,213529..213582)
FT                   /note="8 probable transmembrane helices predicted for
FT                   BP2176 by TMHMM2.0 at aa 5-27, 42-64, 71-91, 96-118,
FT                   130-152, 167-189, 194-216 and 226-243"
FT   CDS             213630..214130
FT                   /transl_table=11
FT                   /locus_tag="BP2177"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Rhizobium meliloti conserved hypothetical
FT                   protein SMC00230 TR:CAC46234 (EMBL:AL591788) (165 aa) fasta
FT                   scores: E(): 3.6e-31, 56.09% id in 164 aa, and to
FT                   Pseudomonas aeruginosa hypothetical protein PA0711
FT                   TR:Q9I5L7 (EMBL:AE004506) (168 aa) fasta scores: E():
FT                   7.7e-27, 52.46% id in 162 aa"
FT                   /db_xref="GOA:Q7VWN0"
FT                   /db_xref="InterPro:IPR016181"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWN0"
FT                   /protein_id="CAE42455.1"
FT                   /translation="MLIRSETPADQRAIFDVTQAAFRGHPHSEQTEAYIVQALRAAGAL
FT                   TLSLVAELDARVVGHAAFSPVQISDGSPSWFGLGPVSVDPAHQGRGIGTALIEHGLARL
FT                   QARGAAGCVLVGEPAYYGRFGFRPEPGLVLPDMPPTHFLALTFGAPARGTVTYHPGFAA
FT                   RDA"
FT   CDS             214229..215152
FT                   /transl_table=11
FT                   /locus_tag="BP2178"
FT                   /product="putative ABC transporter, ATP-binding subunit"
FT                   /note="Similar to many eg. Caulobacter crescentus ABC
FT                   transporter, ATP-binding protein CC3373 TR:Q9A333
FT                   (EMBL:AE005998) (314 aa) fasta scores: E(): 4.8e-77, 77.12%
FT                   id in 306 aa"
FT                   /db_xref="GOA:Q7VWM9"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWM9"
FT                   /protein_id="CAE42456.1"
FT                   /translation="MQAVISVQGLSKTYASGHPALKNINLDIYRGEIFALLGPNGAGKT
FT                   TLISIICGIVNPGSGRVLADGHDIVREFRAARDAIGLVPQELTTDAFETVWNTVSFSRG
FT                   LFGKPADPALIERILRDLSLWDKKDSRIMALSGGMKRRAMIAKALSHEPRILFLDEPTA
FT                   GVDVELRHGMWQMVRRLRENGVTIILTTHYIEEAQEMADRIGVIRKGEIILVEDKHALM
FT                   SKLGKKQLVIMLDAPLAALPALAGDYQLELAAEGTQLVYTYDNQVSGGIAALLRELDAR
FT                   GIGFHDLQSSESSLEDIFVSLVSAQT"
FT   misc_feature    214319..214858
FT                   /note="HMMPfam hit to PF00005, ABC transporter"
FT   misc_feature    214340..214363
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   misc_feature    214631..214675
FT                   /note="ScanRegExp hit to PS00211, ABC transporters family
FT                   signature."
FT   CDS             215149..215910
FT                   /transl_table=11
FT                   /locus_tag="BP2179"
FT                   /product="putative ABC transporter inner membrane subunit"
FT                   /note="Similar to Caulobacter crescentus ABC-2 type
FT                   transporter, putative cc3372 TR:Q9A334 (EMBL:AE005998) (253
FT                   aa) fasta scores: E(): 1.6e-69, 75.79% id in 252 aa"
FT                   /db_xref="GOA:Q7VWM8"
FT                   /db_xref="InterPro:IPR013526"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWM8"
FT                   /protein_id="CAE42457.1"
FT                   /translation="MNWYAIKAIYKFEMARAWRTLMQSVASPVISTSLYFVVFGAAIGS
FT                   HMVEIDGVSYGAFIVPGMIMLSLLTQSVANASFGIYMPRFSGTIYEIHSAPISYVEIVL
FT                   GYVGAAASKSILLGLIMLATARLFVPFHIDHPVWMLAFLVLTAVTFSLFGFIIGIWADG
FT                   FEKLQIIPLMIITPLTFLGGTFYSIKMLPPFWQTVTLFNPVVYLVSGFRWAFYGSADVS
FT                   LGVSLGMTLAFLLVCLLTVRWIFRTGYRLKT"
FT   misc_feature    215179..215898
FT                   /note="HMMPfam hit to PF01061, ABC-2 type transporter"
FT   misc_feature    join(215209..215277,215320..215388,215449..215517,
FT                   215560..215628,215647..215715,215728..215796,
FT                   215815..215883)
FT                   /note="7 probable transmembrane helices predicted for
FT                   BP2179 by TMHMM2.0 at aa 21-43, 58-80, 101-123, 138-160,
FT                   167-189, 194-216 and 223-245"
FT   CDS             complement(215926..217011)
FT                   /transl_table=11
FT                   /locus_tag="BP2180"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to many eg. Rhizobium meliloti conserved
FT                   hypothetical protein sma0665 TR:AAK65009 (EMBL:AE007226)
FT                   (413 aa) fasta scores: E(): 9.9e-38, 38.28% id in 350 aa,
FT                   and to Escherichia coli hypothetical protein ydik or b1688
FT                   SW:YDIK_ECOLI (P77175) (370 aa) fasta scores: E(): 9.4e-27,
FT                   28.85% id in 350 aa"
FT                   /db_xref="InterPro:IPR002549"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWM7"
FT                   /protein_id="CAE42458.1"
FT                   /translation="MMQTESNPLAERFIARNLLDLAIRITLIGGLTVWCYRVAEPFIGM
FT                   LLWSIILAVTLAPLHMRLTRLLGARPRLAAVVLTLATMLVLLVPGAMLTASLGDSLVNI
FT                   FHHSTGRIVRIPAPPDFVIELPLIGVRLHEIWLQAMTNLQDVLKPLQPHLATAGRWLLA
FT                   GMASAGLGIAVFLASIAIAGVILVYADPAKRAAHAIGVRIAGPEQGVALAQLTAATIRA
FT                   VAQGVIGVALIQAVLAGLGFLLAGVPAAGLWAIVALLICIVQLPLFLLMVPMVVYVFLN
FT                   NTPTVAIVFAVWCLLVSLCDNVLKPLMLARGVDIPIPVILIGALGGVLAAGIVGLFLGS
FT                   VGFGLGYVLFMQWVRQQSPAG"
FT   misc_feature    complement(215950..216957)
FT                   /note="HMMPfam hit to PF01594, Domain of unknown function
FT                   DUF20"
FT   misc_feature    complement(join(215965..216066,216112..216177,
FT                   216199..216264,216277..216342,216448..216513,
FT                   216727..216792,216829..216885,216898..216948))
FT                   /note="8 probable transmembrane helices predicted for
FT                   BP2180 by TMHMM2.0 at aa 21-38, 42-61, 73-95, 166-188,
FT                   223-245, 249-271, 278-300 and 315-349"
FT   repeat_region   217109..217140
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   217109..218161
FT   CDS             217211..218161
FT                   /transl_table=11
FT                   /locus_tag="BP2181"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q84CT8"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q84CT8"
FT                   /protein_id="CAE42459.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT"
FT   misc_feature    217469..217534
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   misc_feature    217592..218125
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   CDS             complement(218121..218534)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2182"
FT                   /product="conserved hypothetical protein (Pseudogene)"
FT                   /note="Pseudogene. This CDS is disrupted by the insertion
FT                   of IS481 element. The insertion occurred near the
FT                   C-terminus (following codon 124), replacing the 2
FT                   C-terminal aa with 13 aa encoded within the IS481 element.
FT                   It is not clear whether this insertion affects the function
FT                   of the protein. Similar to Rhizobium loti Mll1856 protein
FT                   Mll1856 TR:Q98JN9 (EMBL:AP002998) (133 aa) fasta scores:
FT                   E(): 8.4e-21, 55.46% id in 119 aa, and to Escherichia coli
FT                   hypothetical protein YgjM or B3082 SW:YGJM_ECOLI (P42594)
FT                   (138 aa) fasta scores: E(): 0.014, 33.33% id in 117 aa"
FT                   /db_xref="PSEUDO:CAE42460.1"
FT   repeat_region   complement(218130..218161)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   misc_feature    complement(218181..218342)
FT                   /note="HMMPfam hit to PF01381, Helix-turn-helix"
FT   misc_feature    218535..219439
FT                   /note="Region of unusual DNA content"
FT   CDS             218819..219118
FT                   /transl_table=11
FT                   /locus_tag="BP2183"
FT                   /product="conserved hypothetical protein"
FT                   /note="Lies in region of unusual DNA content. Weakly
FT                   similar to Xylella fastidiosa hypothetical protein Xf2507
FT                   TR:Q9PAK8 (EMBL:AE004058) (110 aa) fasta scores: E():
FT                   1.3e-05, 31.57% id in 95 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWM6"
FT                   /protein_id="CAE42461.1"
FT                   /translation="MNRIGGVGIAWYRKEDYERVRAISNDAHTFPDTFEDWEKRAEERR
FT                   EEILKLGHVVIKAYIDPDTFPAWCRANRYKVDAKGRMAFASAEAHRVTSHVHKD"
FT   tRNA            complement(219440..219518)
FT                   /note="tRNA Met anticodon CAT, Cove score 66.21"
FT   CDS             complement(219528..221810)
FT                   /transl_table=11
FT                   /gene="rpoD"
FT                   /locus_tag="BP2184"
FT                   /product="RNA polymerase sigma factor 70"
FT                   /note="Previously sequenced as Bordetella pertussis RNA
FT                   polymerase sigma factor RpoD TR:P77833 (EMBL:U73858) (733
FT                   aa) fasta scores: E(): 0, 100% id in 733 aa, and similar to
FT                   Escherichia coli RNA polymerase sigma factor RpoD TR:Q59371
FT                   (EMBL:U23083) (603 aa) fasta scores: E(): 1.2e-101, 56.1%
FT                   id in 606 aa"
FT                   /db_xref="GOA:Q7VWM5"
FT                   /db_xref="HSSP:1IW7"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWM5"
FT                   /protein_id="CAE42462.1"
FT                   /translation="MTKSTGKSPSAIDAATAQSTTAKRAASMAAEKAPAKTAVKVAKPA
FT                   AKTAAKKTATKTVAAKTAAADKPAKTTKARAKKAEDKLADLVGAARPAPSGRRPGRPAK
FT                   NANNDSDAFDDSMDGEGEVLPDLKPPKRGGKRGKADPKDLIARGPVSPEEYEARRNRLK
FT                   QLIKLGKDRGYLTYGEINDHLPDDLVDAEAIDGIISTFSDMGIAVYDQAPDAETLLMSE
FT                   NAPVASNDDDVEDEAEAALTTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIE
FT                   DGLKHMVMAISACPTTINEILAHITRVREGQAQIDEVVDGLVDPEDGEEYAGAGVTADE
FT                   DEGDDGPAGGMSSKQLEDLRVKALAKFDEVSKQFEKMRQSYEKEGYKSDAYLKAQDIIQ
FT                   TELMGIRFTAKMVEKLADTLRAQVEEVRQLERAVLHTCVDRAGMPRSHFLKAFPGNETN
FT                   LQWVLDEVAAAHAYSETLERQIPAVQELQQKLIDLQTRVVLPLKDLKDVNKRMATGEAK
FT                   ARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY
FT                   ATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAQKMDM
FT                   PEDKIRKILKIAKEPISMETPIGDDDDSHLGDFIEDTATLAPSDAALHGSMRDVVKEVL
FT                   DSLTPREAKVLRMRFGIEMSTDQTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADKL
FT                   KSFLEGQ"
FT   misc_feature    complement(219573..220256)
FT                   /note="HMMPfam hit to PF00140, Sigma-70 factor"
FT   misc_feature    complement(219579..219659)
FT                   /note="ScanRegExp hit to PS00716, Sigma-70 factors family
FT                   signature 2. Confirmed by InterPro eMOTIF pattern match."
FT   misc_feature    complement(219597..219662)
FT                   /note="Predicted helix-turn-helix motif with score 1783
FT                   (+5.26 SD) at aa 717-738, sequence QTLEEVGKQFDVTRERIRQIEA"
FT   misc_feature    complement(220125..220166)
FT                   /note="ScanRegExp hit to PS00715, Sigma-70 factors family
FT                   signature 1. Confirmed by InterPro eMOTIF pattern match."
FT   CDS             complement(222496..224526)
FT                   /transl_table=11
FT                   /gene="dnaG"
FT                   /gene_synonym="dnaP"
FT                   /gene_synonym="parB"
FT                   /locus_tag="BP2185"
FT                   /product="DNA primase"
FT                   /EC_number="2.7.7.-"
FT                   /note="Similar to Escherichia coli DNA primase DnaG or DnaP
FT                   or ParB or b3066 or z4419 or ecs3949 SW:PRIM_ECOLI (P02923)
FT                   (581 aa) fasta scores: E(): 2.7e-63, 46.18% id in 446 aa,
FT                   and to Neisseria meningitidis DNA primase dnag or nma1736
FT                   SW:PRIM_NEIMA (P57028) (590 aa) fasta scores: E(): 7.4e-76,
FT                   46.45% id in 508 aa"
FT                   /db_xref="GOA:Q7VWM4"
FT                   /db_xref="HSSP:1DD9"
FT                   /db_xref="InterPro:IPR006154"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWM4"
FT                   /protein_id="CAE42463.1"
FT                   /translation="MIPESFIQDLLARVDVVDVVGRYVQLRKGGANLLGLCPFHNEKSP
FT                   SFTVSPTKQFYHCFGCGAHGSAITFLMEHTGASFPEAVRTLAAAVGLTVPEENHSPRQQ
FT                   AESARRKAEVSRHTQVLDAAQAHYLRQLRGSPQAIAYLKQRGLTGEIAAHFGLGWSGTD
FT                   RHGLSHVFDNYEDPVLVEAGLVIESEDGRRYDRFRERVMFPIRNARGSLIGFGGRIIGK
FT                   GEPKYLNSPETPLFSKGHELYGLWEARLAIRQEGQVVVVEGYMDVVGLALQGIANAVAT
FT                   LGTSTTPDHVKKLLRASDKVIFSFDGDAAGRRAAWRALQACLPVLRDDIAIRFLFLPAE
FT                   HDPDSYVRELGAEAFRTRLGEAVALSRFLLDELASRHTMGEAEGRASCLHEAKPLLAAI
FT                   PECALRVQIERELARLVQLTPEEMAQVLAQQPARPLASAAAPAQASAPAAGREGGPGHA
FT                   DEAPPDWAFEPVHDFEPDAYSVGAVDGEPSMPAAGGWQERKGRQGGDWKGKKGDWKGKK
FT                   GDWKGRRDNDTGGYEGRRTMPSLARRLLCLLLAHPELVDTMGDQQLEVIDHGPHLGLVR
FT                   DLILLAQTSGARHVGALMEAADPDSDLYVVLKGLRADVLAQEDLPHPQTEWDDALRRME
FT                   FDAARAEMAKLAESGLATDEARRRYLELSSRIMVLKNAGAQ"
FT   misc_feature    complement(223513..223761)
FT                   /note="HMMPfam hit to PF01751, Toprim domain"
FT   misc_feature    complement(224260..224430)
FT                   /note="HMMPfam hit to PF01807, CHC2 zinc finger"
FT   CDS             complement(224546..224758)
FT                   /transl_table=11
FT                   /gene="rpsU"
FT                   /locus_tag="BP2186"
FT                   /product="30S ribosomal protein S21"
FT                   /note="Similar to Escherichia coli 30S ribosomal protein
FT                   S21 RpsU or B3065 or Z4418 or Ecs3948 SW:RS21_ECOLI
FT                   (P02379) (70 aa) fasta scores: E(): 9.2e-14, 60% id in 70
FT                   aa, and to Neisseria meningitidis 30S ribosomal protein S21
FT                   RpsU or NMA0502 or NMB1950 SW:RS21_NEIMA (Q9JRG3) (70 aa)
FT                   fasta scores: E(): 7.4e-20, 77.14% id in 70 aa"
FT                   /db_xref="GOA:Q7VWM3"
FT                   /db_xref="InterPro:IPR018278"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VWM3"
FT                   /protein_id="CAE42464.1"
FT                   /translation="MPIVRLKENEPFEAALRRFKRTIEKTGLLTELRSREFYEKPTAER
FT                   KRKHAAAVKRHYKRIRSQQLPPRLY"
FT   misc_feature    complement(224594..224755)
FT                   /note="HMMPfam hit to PF01165, Ribosomal protein S21"
FT   misc_feature    complement(224684..224722)
FT                   /note="ScanRegExp hit to PS01181, Ribosomal protein S21
FT                   signature. Confirmed by InterPro eMOTIF pattern match."
FT   CDS             complement(225036..225575)
FT                   /transl_table=11
FT                   /locus_tag="BP2187"
FT                   /product="putative transferase"
FT                   /note="Similar to Archaeoglobus fulgidus xanthine-guanine
FT                   phosphoribosyltransferase AF0239 TR:O30000 (EMBL:AE001089)
FT                   (194 aa) fasta scores: E(): 1e-09, 31.81% id in 154 aa"
FT                   /db_xref="GOA:Q7VWM2"
FT                   /db_xref="InterPro:IPR002375"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWM2"
FT                   /protein_id="CAE42465.1"
FT                   /translation="MSSPSSDDSHLWVTWDDYHRLIERLALQVYQSGWQFDQILCLARG
FT                   GVRVGDVMSRIFDVPLGILATSSYREAAGTKQGDLDIAQFITITRGTLSGRVLLVDDMV
FT                   DTGHTFNKVHTHLSEQFPAISELRSAVLWWKGHSQATPDYFVDKLPTNPWIHQPFEDYD
FT                   SLRPHQLEAWIRKGYK"
FT   misc_feature    complement(225108..225566)
FT                   /note="HMMPfam hit to PF00156, Phosphoribosyl transferase
FT                   domain"
FT   misc_feature    complement(225249..225287)
FT                   /note="ScanRegExp hit to PS00103, Purine/pyrimidine
FT                   phosphoribosyl transferases signature."
FT   CDS             complement(225689..226996)
FT                   /transl_table=11
FT                   /gene="purA"
FT                   /gene_synonym="adeK"
FT                   /locus_tag="BP2188"
FT                   /product="adenylosuccinate synthetase"
FT                   /EC_number="6.3.4.4"
FT                   /note="Similar to Escherichia coli and adenylosuccinate
FT                   synthetase PurA or AdeK or b4177 or z5784 or ecs5153
FT                   SW:PURA_ECOLI (P12283) (431 aa) fasta scores: E(): 5e-98,
FT                   59.25% id in 427 aa, and to Neisseria meningitidis
FT                   adenylosuccinate synthetase NMB0815 TR:Q9K012
FT                   (EMBL:AE002435) (434 aa) fasta scores: E(): 1.9e-114,
FT                   66.58% id in 431 aa"
FT                   /db_xref="GOA:Q7VWM1"
FT                   /db_xref="InterPro:IPR001114"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VWM1"
FT                   /protein_id="CAE42466.1"
FT                   /translation="MIRKMSKNVVVIGTQWGDEGKGKIVDWLAESVQGVVRFQGGHNAG
FT                   HTLWINGKKTILRLIPSGIMHDGVTCFIGNGVVLSPEALLREIEELEAAGLDVRSRLQV
FT                   SEICTLILPYHVAVDKAREARKGEGKIGTTGRGIGPAYEDKVARRALRVQDLFNPALFD
FT                   EKLAEVLDYHNFVLTQYLGAEPVSANEVRDQAMALAPALAPMVRDVSSNLFALQQEGKN
FT                   LLFEGAQGALLDVDHGTYPFVTSSNCVAGAASAGAGVGPQALQYVLGITKAYTTRVGSG
FT                   PFPTELVDEIGARLATIGKEFGSVTGRPRRCGWLDGAALKRSVRLNGISGLCITKLDVL
FT                   DGLETIQLGVGYRVNGEFRDVLPYGAHAVAQAQAVLEELPGWTESTVGITEYSKLPVNA
FT                   RRYLERVAEVCGVPIDLVSTGPDRNKTIVLRHPFKG"
FT   misc_feature    complement(225803..226969)
FT                   /note="HMMPfam hit to PF00709, Adenylosuccinate synthetase"
FT   misc_feature    complement(226553..226588)
FT                   /note="ScanRegExp hit to PS00513, Adenylosuccinate
FT                   synthetase active site. Confirmed by InterPro eMOTIF
FT                   pattern match."
FT   misc_feature    complement(226931..226954)
FT                   /note="ScanRegExp hit to PS01266, Adenylosuccinate
FT                   synthetase GTP-binding site. Confirmed by InterPro eMOTIF
FT                   pattern match."
FT   CDS             complement(227061..228218)
FT                   /transl_table=11
FT                   /locus_tag="BP2189"
FT                   /product="putative tRNA synthetase"
FT                   /note="Similar to Escherichia coli and histidyl-RNA
FT                   synthetase HisS or b2514 or z3777 or ecs3376 SW:SYH_ECOLI
FT                   (P04804) (423 aa) fasta scores: E(): 4.9e-05, 24.02% id in
FT                   333 aa, and to Neisseria meningitidis histidyl-tRNA
FT                   synthetase NMB0814 TR:Q9K013 (EMBL:AE002434) (383 aa) fasta
FT                   scores: E(): 1.5e-51, 43.26% id in 386 aa"
FT                   /db_xref="GOA:Q7VWM0"
FT                   /db_xref="InterPro:IPR004516"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VWM0"
FT                   /protein_id="CAE42467.1"
FT                   /translation="MGNWLLPEGLADVLPAEARRIEELRRELLDLYRTYGFELVAPPLV
FT                   EYIDSLLSSTGSDLNLRTCKLVDQLSGRTLGVRADMTSQVTRIDAHLLNRAGVTRLCYC
FT                   GSVLHARPADLLSSRELLQIGAEIYGHAGFEADLEIIQLVMDTLATAGVRNARLDLCHS
FT                   GVMRAIFDADPQASRHAGDLCTLLREKDVPGLAELASRVDGLGEDTVRALQALATLYGG
FT                   PEIIARARRELPAVPGMAQALDALQALVDAMPGVTLSVDLADVGGYGYHSGVTFAVYGE
FT                   DWHDALVRGGRYDDVSCAFGRARPATGFSLDLRKLAAGLTPAEPARAVRAPWGQDPALT
FT                   DAVRRLRRSGEIVVQVLPGHEQGLDEFVCDRELALQDGAWTVRTL"
FT   CDS             complement(228402..229301)
FT                   /transl_table=11
FT                   /gene="hflC"
FT                   /locus_tag="BP2190"
FT                   /product="putative inner membrane-anchored protein"
FT                   /note="Similar to predicted proteases eg. Pseudomonas
FT                   aeruginosa protease subunit HflC or PA4941 TR:Q9HUM3
FT                   (EMBL:AE004907) (289 aa) fasta scores: E(): 7.3e-37, 40.13%
FT                   id in 289 aa"
FT                   /db_xref="GOA:Q7VWL9"
FT                   /db_xref="InterPro:IPR010200"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWL9"
FT                   /protein_id="CAE42468.1"
FT                   /translation="MQRLMPILVGLLVVLAVLSSCVFVVRERDYALVFSLGEVRQVISE
FT                   PGLYFKAPPPFQNVVTLDKRILTIESSDAERIQTSEKKNLLIDSYVKWRIADPRLYYVT
FT                   FGGNERAAQERLQAQIRDALNAAVNVRTVKDVVSAERDKVMAEILTNVVKRAEPLGVQV
FT                   VDVRLRRIEFAPEISESVYRRMEAERTRVANELRSIGAAESEKIRAEADRQREVIVAQA
FT                   YARAQGIMGEGDAQAGSIYAQAFGRNTEFYTYYKSLEAYRAAFGKTGDVLVVDPTSEFF
FT                   QFFKNPGKGAAGAPAPAN"
FT   misc_feature    complement(228690..229283)
FT                   /note="HMMPfam hit to PF01145, SPFH domain / Band 7 family"
FT   misc_feature    complement(229230..229301)
FT                   /note="Signal peptide predicted for BP2190 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.934) with cleavage site
FT                   probability 0.520 between residues 24 and 25"
FT   misc_feature    complement(229239..229271)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(229320..230624)
FT                   /transl_table=11
FT                   /gene="hflK"
FT                   /locus_tag="BP2191"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Pseudomonas aeruginosa protease subunit
FT                   HflK or PA4942 TR:Q9HUM2 (EMBL:AE004907) (400 aa) fasta
FT                   scores: E(): 3.1e-34, 42.5% id in 400 aa, and to
FT                   Escherichia coli and HflK protein or HflA or b4174 or z5781
FT                   or ecs5150 SW:HFLK_ECOLI (P25662) (419 aa) fasta scores:
FT                   E(): 3e-31, 39.04% id in 420 aa"
FT                   /db_xref="GOA:Q7VWL8"
FT                   /db_xref="InterPro:IPR010201"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWL8"
FT                   /protein_id="CAE42469.1"
FT                   /translation="MSRITKLFNLNDPGWGRGNNNGNGSEPPRRPQGGGDGPPDLDEVW
FT                   RDFNNRIGALFGRKGGGGNNRPNNRGGMTPPSPRGARIGLGIIALVLVLLWLASGFFIV
FT                   QEGQVAVVTQFGKYKSTAPAGFQWRMPYPIQNHEMVNVSQLRTFEVGFRGGSRNKVLPE
FT                   ALMLTTDENIVDMQFVVQYRLRADGAPDYLFKMRDPDESVRQAAETAMREIVGKKPMDF
FT                   VLYEGRTEVATEVQNLMQQILDRYSAGIQISTVAIQNVQPPEQVQAAFDDAVKAGQDRE
FT                   RQINEGQAYANQVVPLASGQASRMIEQAEGYKAKVIGDAQGNASRFSSILNEYEKAPQV
FT                   MRERLYLETMQEVFTRASKVMVDTKGGNNMLYLPLDKIMQQAAQDAGKPSSSSLGLPGA
FT                   NQPAIPQAPARGSTSGQSSSGSSTSNTLPRDRMSR"
FT   misc_feature    complement(229746..230366)
FT                   /note="HMMPfam hit to PF01145, SPFH domain / Band 7 family"
FT   misc_feature    complement(230310..230375)
FT                   /note="1 probable transmembrane helix predicted for BP2191
FT                   by TMHMM2.0 at aa 83-105"
FT   CDS             complement(230590..231696)
FT                   /transl_table=11
FT                   /gene="hflX"
FT                   /locus_tag="BP2192"
FT                   /product="putative GTP-binding protein"
FT                   /note="Similar to Escherichia coli GTP-binding protein HflX
FT                   or b4173 SW:HFLX_ECOLI (P25519) (426 aa) fasta scores: E():
FT                   1e-60, 56.62% id in 332 aa"
FT                   /db_xref="GOA:Q7VWL7"
FT                   /db_xref="InterPro:IPR002917"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWL7"
FT                   /protein_id="CAE42470.1"
FT                   /translation="MRALIISVDLGNPDYPAHAEEFAMLAKGAGAEIVGTLTARRDRPD
FT                   AKFFIGSGKVEEGVAMAGALLADIILFDQPLSPAQQRNLEREFNLRVVDRVALILDIFA
FT                   LRAKSHEGKLQVELAQLQHLATRLTRMWSHLERQRGGIGMRGPGEAQLEMDRRMIGAKV
FT                   KVLRERLDRVERQRVTQRRARARGGALSVSLVGYTNAGKSTLFNAMTRAGAYAADQLFA
FT                   TLDTTTRRIWIDGAGSVVLSDTVGFIRDLPHNLIAAFRATLEETVYADLLLHVVDAASA
FT                   QRDEQIAEVDKVLAEIGAAQIPTILVYNKIDRAGLEPRVDRDAHGTIARVFVSATERAG
FT                   LDALRGAIAEIGQIVGNNVSNHQTLQSE"
FT   misc_feature    complement(231088..231111)
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   CDS             complement(231784..232020)
FT                   /transl_table=11
FT                   /gene="hfq"
FT                   /locus_tag="BP2193"
FT                   /product="putative RNA-binding regulatory protein"
FT                   /note="Similar to Escherichia coli Hfq protein or b4172 or
FT                   z5779 or ecs5148 SW:HFQ_ECOLI (P25521) (101 aa) fasta
FT                   scores: E(): 1.6e-21, 83.58% id in 67 aa. Implicated in
FT                   bacteriophage replication poly-A tail elongation and
FT                   selective mRNA degradation."
FT                   /db_xref="GOA:Q7VWL6"
FT                   /db_xref="HSSP:1HK9"
FT                   /db_xref="InterPro:IPR001163"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VWL6"
FT                   /protein_id="CAE42471.1"
FT                   /translation="MSNKGQTLQDPFLNTLRKEHVPVSIYLVNGIKLQGQIESFDQYVV
FT                   LLRNTVTQMVYKHAISTVVPARAVNFQVEVPAE"
FT   CDS             complement(232159..233229)
FT                   /transl_table=11
FT                   /gene="his1"
FT                   /gene_synonym="hisC"
FT                   /locus_tag="BP2194"
FT                   /product="histidinol-phosphate aminotransferase"
FT                   /EC_number="2.6.1.9"
FT                   /note="Similar to Acetobacter pasteurianus
FT                   histidinol-phosphate aminotransferase HisC or His1
FT                   SW:HIS8_ACEPA (P45358) (356 aa) fasta scores: E(): 6.2e-79,
FT                   59.6% id in 354 aa. Similar to BP3769 (34.118% identity in
FT                   340 aa overlap)"
FT                   /db_xref="GOA:Q7VWL5"
FT                   /db_xref="InterPro:IPR015421"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VWL5"
FT                   /protein_id="CAE42472.1"
FT                   /translation="MSRYWSPVVGTLSPYVPGEQPKLPDLIKLNTNENPYGPSPKVLQA
FT                   IAAAAGDTLKLYPDPASDELRGAIAAAVGVQADQVFVGNGSDEVLAHVFMALFRHGRPV
FT                   RFPDISYSFYPVYCGLYEIPYQVVPLTDDFRIDPADYQPGGQAAGGIIFPNPNAPTGRA
FT                   LTRDEVERIVTANPDTVVVVDEAYVDFGAESVAPLVDRHDNLLVVQTLSKSRSLAGLRV
FT                   GFAVGNRALIDGLERVKNSFNSYPIDRLASAGAQAAMQDQAYFDRTRQAVMATRERMSA
FT                   DLRALGFDVLPSAANFVFARHPEHDAAQLAARLRERSILVRYFRQARIDQFLRITVGTD
FT                   AQCEALIGALKKIFSL"
FT   misc_feature    complement(232228..233010)
FT                   /note="HMMPfam hit to PF00222,"
FT   misc_feature    complement(232573..232602)
FT                   /note="ScanRegExp hit to PS00599, Aminotransferases
FT                   class-II pyridoxal-phosphate attachment site."
FT   CDS             complement(233233..234588)
FT                   /transl_table=11
FT                   /locus_tag="BP2195"
FT                   /product="putative GTP-binding protein"
FT                   /note="Similar to many eg. Neisseria gonorrhoeae probable
FT                   GTP-binding protein EngA SW:ENGA_NEIGO (O87407) (485 aa)
FT                   fasta scores: E(): 5e-95, 60.81% id in 444 aa"
FT                   /db_xref="GOA:Q7VWL4"
FT                   /db_xref="InterPro:IPR005225"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VWL4"
FT                   /protein_id="CAE42473.1"
FT                   /translation="MSFKPVVALVGRPNVGKSTLFNRLTRSRAALVADFSGLTRDRHYG
FT                   EGRVGDTPFLVIDTGGFEPVAKDGILAEMARQTRQAIAEADVVVFLVDARAGVNAHDHE
FT                   IARLLRKSGQQRVLLAVNKAEGMGVGNATGDFHELGLGEPHPISAAHGDGIVDLIEIAL
FT                   SGLVAPPADTGEQLEQDVVDHRIKLAIVGRPNVGKSTLINTLLGEERVIAFDMPGTTRD
FT                   AIEIDFERDGRKYTLIDTAGLRKRGKVFEAIEKFSVIKTLQAIEASNVVLLMIDAQAEV
FT                   SEQDAHIAGFVLETGRAVVVAINKWDGLDSDQRERIEREFQRKLRFLGFARMHTISALK
FT                   GQGVKPLLKSVNAAHAAAFAKLSTPRLTRELQAAVEQQPPPRKGIFRPKMRYAHQGGQN
FT                   PPLIVIHGNALDAVPDSYRRYLETRFRNAFDLAGTPLRIEFKSSRNPYVQEN"
FT   misc_feature    complement(233572..234369)
FT                   /note="HMMPfam hit to PF01926, GTPase of unknown function"
FT   misc_feature    complement(233992..234015)
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   misc_feature    complement(234535..234558)
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   CDS             complement(234615..235775)
FT                   /transl_table=11
FT                   /locus_tag="BP2196"
FT                   /product="putative quinoprotein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein PA3800 TR:Q9HXJ7 (EMBL:AE004798) (380 aa) fasta
FT                   scores: E(): 5e-36, 33.33% id in 375 aa, and to Vibrio
FT                   cholerae hypothetical protein VC0762 TR:Q9KTW8
FT                   (EMBL:AE004161) (386 aa) fasta scores: E(): 3.8e-33, 30.31%
FT                   id in 376 aa. Contains six PQQ enzyme repeats."
FT                   /db_xref="InterPro:IPR011047"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWL3"
FT                   /protein_id="CAE42474.1"
FT                   /translation="MMRNSRPGRAWRGAVVLTGLLALSGCSMFSSDDDRYKPAELTQYA
FT                   PGMSVRTAWTASVGSGSGLGFAPTVLGESIYAATPDGSVGKFDLLSGRAIWKSSADAKL
FT                   SAGAGSDGQTTAVATPDGEVIAFDDTGKIKWRARATSDVAIPPVVGYGVVVVRSGDYRI
FT                   QAFNAENGERMWSMQRPGPALALRSAAQMVLAEGLVISGLPGGKLLAINSATGNVQWEG
FT                   TVATPRGASDLERLTDVVGAPRIAGRLMCAVAYQGRIVCFDVSAGGRPIWAKDFSSASG
FT                   MVIDDRFAYAPDQGSVVSAFALDSGNNVWKQAELKNRLLTAPALLGEAVAVGDFEGYVH
FT                   FLSRSDGRLLARLSVGGGAIVSPPQTTSQGVLVQTGNGSLVMVRAN"
FT   misc_feature    complement(234681..234797)
FT                   /note="HMMPfam hit to PF01011, PQQ enzyme repeat"
FT   misc_feature    complement(234918..235037)
FT                   /note="HMMPfam hit to PF01011, PQQ enzyme repeat"
FT   misc_feature    complement(235074..235187)
FT                   /note="HMMPfam hit to PF01011, PQQ enzyme repeat"
FT   misc_feature    complement(235209..235322)
FT                   /note="HMMPfam hit to PF01011, PQQ enzyme repeat"
FT   misc_feature    complement(235329..235442)
FT                   /note="HMMPfam hit to PF01011, PQQ enzyme repeat"
FT   misc_feature    complement(235446..235559)
FT                   /note="HMMPfam hit to PF01011, PQQ enzyme repeat"
FT   misc_feature    complement(235683..235775)
FT                   /note="Signal peptide predicted for BP2196 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.976) with cleavage site
FT                   probability 0.966 between residues 31 and 32"
FT   misc_feature    complement(235698..235730)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(235778..236416)
FT                   /transl_table=11
FT                   /locus_tag="BP2197"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Neisseria meningitidis putative membrane
FT                   protein NMA1064 TR:Q9JV00 (EMBL:AL162755) (209 aa) fasta
FT                   scores: E(): 4.8e-16, 35.07% id in 211 aa"
FT                   /db_xref="InterPro:IPR018704"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWL2"
FT                   /protein_id="CAE42475.1"
FT                   /translation="MAYDLEEQEKLDAIRAWWARYGTLILTLATLVVLAWGGWSGWKAY
FT                   QNYRANQAMGYFEALEDAARLGGADAATRIKAAAATLRTDYPATGYAGRGALIAAQALQ
FT                   SQQDVDGAREQLEWLAAQAKQLALQPVARLRLAGILLDQKQYDAALAQLNNPPASFAAL
FT                   FADRRGDVLAAQGKRDEARAAWQSAIDGLGTSNPLTQVVQLKLDALSGA"
FT   misc_feature    complement(236300..236365)
FT                   /note="1 probable transmembrane helix predicted for BP2197
FT                   by TMHMM2.0 at aa 17-39"
FT   CDS             complement(236418..237722)
FT                   /transl_table=11
FT                   /gene="hisS"
FT                   /locus_tag="BP2198"
FT                   /product="histidyl-tRNA synthetase"
FT                   /EC_number="6.1.1.21"
FT                   /note="Similar to Escherichia coli and histidyl-tRNA
FT                   synthetase HisS or b2514 or z3777 or ecs3376 SW:SYH_ECOLI
FT                   (P04804) (423 aa) fasta scores: E(): 3.1e-88, 55.89% id in
FT                   424 aa"
FT                   /db_xref="GOA:Q7VWL1"
FT                   /db_xref="InterPro:IPR004516"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VWL1"
FT                   /protein_id="CAE42476.1"
FT                   /translation="MVGMTKMTQVFQKVSAIRGMNDVLPGPSARWEKFEEIVRGWLRSY
FT                   GYRNVRTPVLEHTRLFARGIGEVTDIVEKEMYTFTDALNGDSLTMRPEMTAGIVRASIE
FT                   HNMLYDRPHRVYAIGPVFRHERPQRGRYRQFHQIDVEALGFAGPDVDAEMIVMLARLWK
FT                   LLGLQDVRLELNSLGQPAERAAHRAALIEHLERHQDVLDEDGRRRMYSNPLRVLDTKNP
FT                   AMQEMADSAPRLFDFLGEASRSHFDGLCQRLADAGIEYRLNPRLVRGLDYYNLTVFEWV
FT                   TDRLGAQGTVCGGGRYDGLVELLGGKPTPAVGFAIGMERLLDLWEQSVEIEQPAECEVY
FT                   IVHQGEEGQRLAARVGEQLRDAGLDVIVHAGAAGFKAQFKRADASGARIAVILGGDEVA
FT                   SRTASIKHLRGPVGADAAQQQVPLAQLADVLKSKG"
FT   misc_feature    complement(236481..237533)
FT                   /note="HMMPfam hit to PF00587, tRNA synthetase class II (G,
FT                   H, P, S and T)"
FT   misc_feature    complement(237306..237359)
FT                   /note="ScanRegExp hit to PS00179, Aminoacyl-transfer RNA
FT                   synthetases class-II signature 1."
FT   CDS             complement(237763..239058)
FT                   /transl_table=11
FT                   /gene="ispG"
FT                   /gene_synonym="gcpE"
FT                   /locus_tag="BP2199"
FT                   /product="1-hydroxy-2-methyl-2-(E)-butenyl4-diphosphate
FT                   synthase"
FT                   /note="Similar to Ralstonia solanacearum
FT                   1-hydroxy-2-methyl-2-(E)-butenyl4-diphosphate synthase IspG
FT                   or Rsc1215 or Rs02710 SWALL:ISPG_RALSO (SWALL:P58669) (431
FT                   aa) fasta scores: E(): 9.5e-121, 73.73% id in 415 aa"
FT                   /db_xref="GOA:Q7VWL0"
FT                   /db_xref="InterPro:IPR004588"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VWL0"
FT                   /protein_id="CAE42477.1"
FT                   /translation="MRYMQDSSMPCQDASPPDVGAAPRRATRAVRVQWGGRTVTVGGNA
FT                   SVVVQSMTNTDTADAVATAIQVKELAQAGSEIVRITVNTPEAAREVATIREQLDRMGVE
FT                   VPLVGDFHYNGHKLLTQFPECAQALSKYRINPGNMGGGKQRDDNFAQMIEVACRHDKPV
FT                   RIGVNWGSLDHELMARKMDENSRRAQPWEAQAVIRDALVVSAISNARRAEELGLRSDAI
FT                   VLSCKVSHVQDLIAVYRDLSARCDYPLHLGLTEAGMSSKGIVASTAALAVLLQEGIGDT
FT                   IRISLTPEPGGDRTREVIVAQEILQTMGLRAFTPMVVACPGCGRTSSTFFQELADSIQS
FT                   FLRRQMPLWRTRYPGVESMNVAVMGCVVNGPGESRHADIGISLPGTGEVPAAPVFIDGE
FT                   RTVTLKGDHIAEEFQAIVEDYVARRYGAGITH"
FT   CDS             complement(239065..239571)
FT                   /transl_table=11
FT                   /locus_tag="BP2200"
FT                   /product="putative membrane protein"
FT                   /note="No significant database matches"
FT                   /db_xref="GOA:Q7VWK9"
FT                   /db_xref="InterPro:IPR001387"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWK9"
FT                   /protein_id="CAE42478.1"
FT                   /translation="MTQDPASAASPAAIAPGAAAPTVGSALRALRQAKGWSLEEVSSRI
FT                   KFSTRMIQALEEERWESLPKGVSLRGLVRNYARMLGADAQAVVDSLDLEAARTPAPARP
FT                   APRGGQGLRPAGVNISVDDERSSGSWGWLLAILVVVAAAVAYAFWQGWLPQEWLPAQWF
FT                   SPVTQ"
FT   misc_feature    complement(239116..239181)
FT                   /note="1 probable transmembrane helix predicted for BP2200
FT                   by TMHMM2.0 at aa 130-152"
FT   CDS             complement(239568..240716)
FT                   /transl_table=11
FT                   /locus_tag="BP2201"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Rhizobium loti Mlr4359 protein TR:Q98E86
FT                   (EMBL:AP003004) (410 aa) fasta scores: E(): 2.2e-56, 44.96%
FT                   id in 387 aa, and to Neisseria meningitidis hypothetical
FT                   protein NMB1308 TR:Q9JZ42 (EMBL:AE002479) (364 aa) fasta
FT                   scores: E(): 1.5e-54, 63.88% id in 360 aa"
FT                   /db_xref="GOA:Q7VWK8"
FT                   /db_xref="InterPro:IPR007197"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VWK8"
FT                   /protein_id="CAE42479.1"
FT                   /translation="MEAVERVNLLGLDGAALSELVGQWGGKPFRARQLQRWVHQRGADS
FT                   FDAMTDLARDFRAQLARDCVIEALPVNTEQRSSDGTRKWLFDVGQGNAIETVFIPEDDR
FT                   GTLCISSQAGCVVNCRFCSTGHQGFNRNLRASEIIGQLWWAKRVLEAAADTARLPGGKA
FT                   GEDTRVISNVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRL
FT                   SQDCPVALAVSLHAPNDALRDELVPLNKKYPLNALLAACERYLAHAPRDFITFEYCMLD
FT                   GINDTDQHARELIQLARQVRCKLNLIPFNPFPASGLKRSPSARVRVFAQRLMDAGIVTT
FT                   VRKTRGDDIDAACGQLAGEVRDRTRITERNATRTIPIQQVHA"
FT   CDS             complement(240744..241169)
FT                   /transl_table=11
FT                   /gene="ndk"
FT                   /locus_tag="BP2202"
FT                   /product="nucleoside diphosphate kinase"
FT                   /EC_number="2.7.4.6"
FT                   /note="Similar to Pseudomonas aeruginosa nucleoside
FT                   diphosphate kinase Ndk or PA3807 SW:NDK_PSEAE (Q59636) (143
FT                   aa) fasta scores: E(): 4.3e-34, 69.5% id in 141 aa, and to
FT                   Escherichia coli, and nucleoside diphosphate kinase Ndk or
FT                   b2518 or z3781 or ecs3380 SW:NDK_ECOLI (P24233) (142 aa)
FT                   fasta scores: E(): 9.2e-28, 56.42% id in 140 aa"
FT                   /db_xref="GOA:Q7VWK7"
FT                   /db_xref="HSSP:1K44"
FT                   /db_xref="InterPro:IPR001564"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VWK7"
FT                   /protein_id="CAE42480.1"
FT                   /translation="MSIERTLSIIKPDAVAKNVVGQIVARFEQAGLKVIAARMQQLSRT
FT                   DAERFYAVHKERPFFKDLVDFMVSGPVFVQVLEGESAIQKNRDLMGATDPKKAAPGTIR
FT                   ADFADSIDANAVHGSDAPETAAVEVAFFFPEINIHSR"
FT   misc_feature    complement(240747..241160)
FT                   /note="HMMPfam hit to PF00334, Nucleoside diphosphate
FT                   kinase"
FT   misc_feature    complement(240804..240830)
FT                   /note="ScanRegExp hit to PS00469, Nucleoside diphosphate
FT                   kinases active site. Confirmed by InterPro eMOTIF pattern
FT                   match."
FT   CDS             241492..244374
FT                   /transl_table=11
FT                   /gene="valS"
FT                   /locus_tag="BP2203"
FT                   /product="valyl-tRNA synthetase"
FT                   /EC_number="6.1.1.9"
FT                   /note="Similar to Escherichia coli valyl-tRNA synthetase
FT                   ValS or b4258 SW:SYV_ECOLI (P07118) (951 aa) fasta scores:
FT                   E(): 3e-165, 50% id in 980 aa"
FT                   /db_xref="GOA:Q7VWK6"
FT                   /db_xref="HSSP:1IVS"
FT                   /db_xref="InterPro:IPR002303"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VWK6"
FT                   /protein_id="CAE42481.1"
FT                   /translation="MTDAAPNQPVNESQELSKSFEPAEIETRWYDEWAKRGYFDAGRHV
FT                   ETGTDPQPYVIQFPPPNVTGTLHMGHAFNQTIMDGLVRYHRMLGDDTVFVPGTDHAGIA
FT                   TQIVVERQLDAQKVSRHDLGREKFVEKVWEWKEQSGSTITGQVRRLGASADWPREYFTM
FT                   DARMSRGVAETFVRLYQQGLIYRGKRLVNWDPKLLTAVSDLEVQSEEVDGHMWHILYPF
FT                   VDGPQTITDQDGNTVTLRGMTIATTRPETMLADGALCVHPDDPRYKHLLGKLVELPLCD
FT                   RNIPIIADDFVDPDFGTGCVKITGAHDFNDYACALRHDIPLIVIFTLDAHINENGPKQF
FT                   QGLERYEARQAVVAELQAQQYLVKVEPHKMMQPKGDRTGVVLEPMLTDQWFVAMSKPAP
FT                   AGTLNPGKSITEVALEAVADGRIAFYPENWTTIYNQWLNNIQDWCISRQLWWGHQIPAW
FT                   YSEDGQVFVARSEEEAQEQARAAGVSGPLTRDPDILDTWFSSALVPFTTFGWPEDTPDL
FT                   RRYLPSSVLVTGFDIIFFWVARMVMLTMHMTGSVPFKHVYVHGLIRDADGQKMSKSKGN
FT                   TLDPVDLIDGIDLKGLVRKRTFGLMHPKQAGAIEKATRRQYPDGIPAFGTDALRFTMAA
FT                   YATLGRNINFDLKRCEGYRNFCNKLWNATRFVLMNTEGHALDGDGGELSFADRWIVSQL
FT                   QALEAEVERGFADYRFDNVANALYRYVWDEYCDWYLELAKVQIQQGTPAQQLGTRRTLI
FT                   RVLEAVLRLAHPVIPFITEELWQKVALVAGKRTAGAVASVSVQPYPRANPQAVDAEAEA
FT                   AVAELKSQVEAVRALRGEMNLSPAQRVPLVAEGPTDVLSRNTPYLAALAKLSEVEVVAA
FT                   LPDAGAPVQVVGDARLMLHVEIDVAAECARLDKEIARLEGEIAKANGKLGNASFVERAP
FT                   AAVVEQEKARLAQFSETLEKVRGQRVKLGV"
FT   misc_feature    241573..243597
FT                   /note="HMMPfam hit to PF00133, tRNA synthetases class I (I,
FT                   L, M and V)"
FT   misc_feature    241672..241707
FT                   /note="ScanRegExp hit to PS00178, Aminoacyl-transfer RNA
FT                   synthetases class-I signature. Confirmed by InterPro eMOTIF
FT                   pattern match."
FT   misc_feature    242692..242715
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   CDS             complement(244467..245228)
FT                   /transl_table=11
FT                   /locus_tag="BP2204"
FT                   /product="putative outer membrane (scaffolding) protein"
FT                   /note="Similar to Caulobacter crescentus putative outer
FT                   membrane protein Cc0351 precursor SW:Y351_CAUCR (Q9AB80)
FT                   (254 aa) fasta scores: E(): 5.8e-12, 29.38% id in 245 aa,
FT                   and to Escherichia coli mlta-interacting protein precursor
FT                   MipA or b1782 SW:MIPA_ECOLI (P77486) (248 aa) fasta scores:
FT                   E(): 3e-07, 27.64% id in 246 aa"
FT                   /db_xref="InterPro:IPR010583"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWK5"
FT                   /protein_id="CAE42482.1"
FT                   /translation="MTMKHAWWRATVVCLAGTLGTAAQAQNYIGISAAVAPRYEGAKDY
FT                   RFLPVPLIHYENGPFFISPRAGLPSAGLKWQLGEHVHAGVFVGAHLGRDADDSDILHGL
FT                   DDIDMHATYGAYIEWQYGALGLGAAYRQAARSGYGGVGELRATYRVWQTGRDSVSVGAR
FT                   TEWASDDYMRTWYGISASQAARSEAGLRRYSASSGFKSGGIFASWTHRLDQSWAVNATA
FT                   GVNTLFGDARDSPVSERSTNYFGGVGLTYAF"
FT   misc_feature    complement(245154..245228)
FT                   /note="Signal peptide predicted for BP2204 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.981 between residues 25 and 26"
FT   CDS             join(245352..245765,245767..245991)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2205"
FT                   /product="putative two-component response regulator
FT                   (pseudogene)"
FT                   /note="Pseudogene. This CDS appears to have a frameshift
FT                   mutation following codon 138. The sequence has been checked
FT                   and believed to be correct. Similar to Pseudomonas
FT                   aeruginosa probable two-component response regulator Pa4776
FT                   TR:Q9HV32 (EMBL:AE004891) (221 aa) fasta scores: E():
FT                   2.4e-34, 50.69% id in 217 aa"
FT                   /db_xref="PSEUDO:CAE42483.1"
FT   misc_feature    245355..245681
FT                   /note="HMMPfam hit to PF00072, Response regulator receiver
FT                   domain"
FT   misc_feature    join(245760..245765,245767..245964)
FT                   /note="HMMPfam hit to PF00486, Transcriptional regulatory
FT                   protein, C terminal"
FT   variation       245763..245765
FT                   /note="20 bp deletion in pertussis, relative to
FT                   parapertussis and bronchiseptica, following this codon"
FT   CDS             245988..247337
FT                   /transl_table=11
FT                   /locus_tag="BP2206"
FT                   /product="putative two component sensor kinase"
FT                   /note="Similar to Escherichia coli probable sensor protein
FT                   YgiY or b3026 SW:YGIY_ECOLI (P40719) (449 aa) fasta scores:
FT                   E(): 4.2e-34, 32.82% id in 460 aa"
FT                   /db_xref="GOA:Q7VWK4"
FT                   /db_xref="InterPro:IPR003594"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWK4"
FT                   /protein_id="CAE42484.1"
FT                   /translation="MKSLKRRILTAVLAALLLNWGVWLGWQTFEMGRRETGTWDARLRD
FT                   VASQAVLSMPLDIMERSEPTGFRLPEPVQTSELRMSFQIWSMASRRQIVHSVNAPPGPL
FT                   NPAFADGYADVELDGEPWRVYSVTDAEGRIQAQAGHSLAARRGDILQWLGASLKASALL
FT                   FLFLALSILLAIDRAMRRLDRVGRAVQQRDPLDLAPLPDGDVPAELRPLITAINRQFGR
FT                   VHTALARERRLIADAAHELRTPLAALKMQAEVALGARHADERHSALCKLLDAARRAARL
FT                   SEQLLDQARLDAMEATVPGGEVDLATLTAMIIADHQARAQARHQRIQLDARPAFVSGDL
FT                   DSLGILVSNLVDNALRYTPEGGRVVVYCGPLENSAVGLRVLDNGPGVPADRHERIFERF
FT                   YRQPGQAQRGGGIGLSLVAQIARLHRARIDCGAGLDGRGFGIAVGFAPRG"
FT   misc_feature    245988..246059
FT                   /note="Signal peptide predicted for BP2206 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.978) with cleavage site
FT                   probability 0.624 between residues 24 and 25"
FT   misc_feature    join(246006..246074,246441..246509)
FT                   /note="2 probable transmembrane helices predicted for
FT                   BP2206 by TMHMM2.0 at aa 7-29 and 152-174"
FT   misc_feature    246453..246662
FT                   /note="HMMPfam hit to PF00672, HAMP domain"
FT   misc_feature    246672..246869
FT                   /note="HMMPfam hit to PF00512, His Kinase A
FT                   (phosphoacceptor) domain"
FT   misc_feature    246999..247277
FT                   /note="HMMPfam hit to PF02518, Histidine kinase-, DNA
FT                   gyrase B-, phytochrome-like ATPase"
FT   repeat_region   247334..247365
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   247334..248386
FT   CDS             247436..248386
FT                   /transl_table=11
FT                   /locus_tag="BP2207"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTA3"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTA3"
FT                   /protein_id="CAE42485.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS"
FT   misc_feature    247694..247759
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   misc_feature    247817..248350
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   repeat_region   complement(248355..248386)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             join(248383..250299,250303..251061)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP2208"
FT                   /product="putative DNA polymerase III alpha chain
FT                   (pseudogene)"
FT                   /note="Pseudogene. This CDS is disrupted by the insertion
FT                   of IS481 element, and contains an in-frame TAG stop codon.
FT                   Similar to Pseudomonas aeruginosa probable DNA polymerase
FT                   alpha chain pa0669 TR:Q9I5Q2 (EMBL:AE004502) (1031 aa)
FT                   fasta scores: E(): 1.9e-184, 54.99% id in 891 aa. Also
FT                   similar to the C-terminus of BP2332, 35.149% identity
FT                   (37.238% ungapped) in 606 aa overlap."
FT   misc_feature    249565..249612
FT                   /note="ScanRegExp hit to PS01323, Phosphotriesterase family
FT                   signature 2."
FT   variation       250300..250302
FT                   /note="In-frame TAG stop codon in pertussis; TGG in
FT                   parapertussis and bronchiseptica"
FT   misc_feature    250771..250998
FT                   /note="HMMPfam hit to PF01336, OB-fold nucleic acid binding
FT                   domain"
FT   CDS             complement(251127..252416)
FT                   /transl_table=11
FT                   /locus_tag="BP2210"
FT                   /product="putative amino acid dehydrogenase subunit"
FT                   /note="Similar to Pseudomonas aeruginosa probable
FT                   oxidoreductase pa5084 TR:Q9HU99 (EMBL:AE004921) (416 aa)
FT                   fasta scores: E(): 1.2e-65, 49.88% id in 417 aa, and to
FT                   Escherichia coli and D-amino acid dehydrogenase small
FT                   subunit DadA or DadR or b1189 or z1952 or ecs1684
FT                   SW:DADA_ECOLI (P29011) (432 aa) fasta scores: E(): 3.9e-44,
FT                   35.74% id in 414 aa"
FT                   /db_xref="GOA:Q7VWK3"
FT                   /db_xref="InterPro:IPR006076"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWK3"
FT                   /protein_id="CAE42487.1"
FT                   /translation="MRVCVVGAGVVGVTSAYFLARQGHEVVLVDSHAQPAEASSYANGG
FT                   QLSYSYVAPLAGPGVLPSVPGWLLRSDSPLRLRPRLDPHQWRWCLQFALACRASVAERS
FT                   TAQLQTLSYLSRDVMDGLLAQEELEFGHVRNGKLIAYRDHALLEKARRLVAYQASLGAE
FT                   QQVLDAAQTLALEPALAGLGASLAGAVYTPSEEAGDCRQFTEALFARLQQLDNVQCLMS
FT                   NPVRGLWREGRRIVAVQAAQGDIGVDAVVLATGVGTRALLKPLGQDVPLYPLKGYSLSV
FT                   PLPVGDTTAPAISVTDYERRIVYARIGRVLRIAAMVDIGGADAAIEPARIDLLKRQVAE
FT                   AFPQLDLSQAVAWAGLRPATPTGKPLIGASRAADNLWLNIGQGALGFTLACGSAALLTA
FT                   QMSGLELPIDATPFTPDPRRACPRTGTGTR"
FT   CDS             complement(252535..252972)
FT                   /transl_table=11
FT                   /locus_tag="BP2211"
FT                   /product="putative conserved DNA-binding protein"
FT                   /note="Similar to Escherichia coli, hypothetical protein
FT                   YjeB or b4178 or z5785 or ecs5154 SW:YJEB_ECOLI (P21498)
FT                   (141 aa) fasta scores: E(): 3.1e-18, 44.61% id in 130 aa"
FT                   /db_xref="GOA:Q7VWK2"
FT                   /db_xref="InterPro:IPR000944"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWK2"
FT                   /protein_id="CAE42488.1"
FT                   /translation="MQLNRFTDFGLRVMMYLTQCRDRTVPVTIPEIAARFEISRNHLVK
FT                   VVHFLSQQGWIVATRGKGGGLRLARDAVEYRIGELVRVLEDQGALVNCAQPPCVLNGAC
FT                   RLSGALAESLQAFYRTLDGYTLDDLVRAPTALAIVRLHRAA"
FT   misc_feature    complement(252610..252972)
FT                   /note="HMMPfam hit to PF02082, Uncharacterized protein
FT                   family UPF0074"
FT   misc_feature    complement(252829..252894)
FT                   /note="Predicted helix-turn-helix motif with score 1065
FT                   (+2.81 SD) at aa 27-48, sequence VTIPEIAARFEISRNHLVKVVH"
FT   CDS             complement(253016..254224)
FT                   /transl_table=11
FT                   /gene="fhp"
FT                   /locus_tag="BP2212"
FT                   /product="flavohemoprotein"
FT                   /product="putative flavohemoprotein"
FT                   /note="Similar to Alcaligenes eutrophus flavohemoprotein
FT                   Fhp SW:HMPA_ALCEU (P39662) (403 aa) fasta scores: E():
FT                   1.7e-73, 53.5% id in 400 aa, and to Escherichia coli
FT                   flavohemoprotein Hmp or HmpA or FsrB or b2552 SW:HMPA_ECOLI
FT                   (P24232) (396 aa) fasta scores: E(): 8.5e-55, 43.82% id in
FT                   397 aa"
FT                   /db_xref="GOA:Q7TTP0"
FT                   /db_xref="InterPro:IPR001221"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7TTP0"
FT                   /protein_id="CAE42489.1"
FT                   /translation="MLSPEVRALVKATAPVLKEHGEALTRHFYTRMLGGNPELRQLFNQ
FT                   GHQQSGQQQQALAAAVAAYAEHIDDPSVLLQVVERIAHKHVSLGVRAEHYAIVGKHLLA
FT                   SIREVLGEAATDELIDAWAAAYGQLADLLIGRERALYAAAASRDGGWTGWRAFKVVRKT
FT                   PESAEITSFYLAPADGGATPDYLPGQYVSVRVYVPELGLMQPRQYSLSEAPGMPGQLRI
FT                   SVKREAGSPAGMVSGTLHNRINEGDVLDVSPPQGDFTLDAEDGRPVVLLSGGVGLTPMV
FT                   SMLNHLTARDDGRQIRFVHACREAGVHAMKEHINALAAKRPNVRKAVFYERVGADDRRG
FT                   VDYDYEGRVDLHAIRDEVILPDADYYLCGPLPFMQAQRRALADLGVAEHRIHAEVFGTG
FT                   GVA"
FT   misc_feature    complement(253082..253432)
FT                   /note="HMMPfam hit to PF00175, Oxidoreductase NAD-binding
FT                   domain"
FT   misc_feature    complement(253811..254224)
FT                   /note="HMMPfam hit to PF00042, Globin"
FT   CDS             254371..254835
FT                   /transl_table=11
FT                   /locus_tag="BP2213"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Vibrio cholerae hypothetical protein
FT                   Vc0519 TR:Q9KUK0 (EMBL:AE004138) (147 aa) fasta scores:
FT                   E(): 2.4e-18, 51.04% id in 143 aa, and to Neisseria
FT                   meningitidis hypothetical protein NMB1951 TR:Q9JXP0
FT                   (EMBL:AE002543) (180 aa) fasta scores: E(): 9.2e-18, 47.02%
FT                   id in 168 aa"
FT                   /db_xref="GOA:Q7VWK1"
FT                   /db_xref="InterPro:IPR019004"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWK1"
FT                   /protein_id="CAE42490.1"
FT                   /translation="MSHDTLKARLSDSVKDAMRAKATDRLATLRFLLAAIKQREVDERR
FT                   ELSDAEITAVIEKQVKQRRESIAAFEQAGRTETAEHEKAELAVLQEFLPQAAAPEEVAA
FT                   AVDAALAEVSAQGVTGAPAMGKVMAILKQKLAGRADMAALSQQVKARLLP"
FT   misc_feature    254380..254826
FT                   /note="HMMPfam hit to PF02637, GatB/Yqey domain"
FT   CDS             complement(254859..255809)
FT                   /transl_table=11
FT                   /locus_tag="BP2214"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTB5"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTB5"
FT                   /protein_id="CAE42491.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI"
FT   repeat_region   254859..254890
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   complement(254859..255911)
FT   misc_feature    complement(254895..255428)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   misc_feature    complement(255486..255551)
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   repeat_region   complement(255880..255911)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(255908..256468)
FT                   /transl_table=11
FT                   /gene="ectA"
FT                   /locus_tag="BP2215"
FT                   /product="L-2,4-diaminobutyric acid acetyltransferase"
FT                   /note="Similar to Halomonas elongata L-2,4-diaminobutyric
FT                   acid acetyltransferase ectA SW:ECA2_HALEL (O52249) (192 aa)
FT                   fasta scores: E(): 2.7e-25, 43.82% id in 178 aa, and to
FT                   Bacillus pasteurii EctA TR:Q9AP35 (EMBL:AF316874) (180 aa)
FT                   fasta scores: E(): 1.1e-11, 34.17% id in 158 aa"
FT                   /db_xref="GOA:Q7VWK0"
FT                   /db_xref="InterPro:IPR012772"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWK0"
FT                   /protein_id="CAE42492.1"
FT                   /translation="MRKDETSNTSPDISAAQPASALRYHLRPPRRNDGAAIHQLVSECP
FT                   PLDLNSLYAYLLLCEHHAHTCVVAESPGGRIDGFVSAYLLPTRPDVLFVWQVAVHSRAR
FT                   GHRLGRAMLGHILERQECRHVRHLETTVGPDNQASRRTFAGLAGERGAHVSEQPFFDRQ
FT                   AFGGADHDDEMLLRIGPFTHPPH"
FT   misc_feature    complement(256022..256267)
FT                   /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT)
FT                   family"
FT   CDS             complement(256465..257010)
FT                   /transl_table=11
FT                   /locus_tag="BP2216"
FT                   /product="putative transcriptional regulator (MarR family)"
FT                   /note="Similar to Vibrio cholerae transcriptional
FT                   regulator, MarR family vc1278 TR:Q9KSH8 (EMBL:AE004207)
FT                   (159 aa) fasta scores: E(): 3.1e-11, 36.02% id in 136 aa"
FT                   /db_xref="GOA:Q7VWJ9"
FT                   /db_xref="InterPro:IPR000835"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWJ9"
FT                   /protein_id="CAE42493.1"
FT                   /translation="MNNVAQTDTPQQYDLRILRALRRITRSIALHSRQLAAVSHITAPQ
FT                   LMCLRAVIAGGPMTATAISREIHVSPSTVVGILDRLEDKGLIRRERGREDRRIVFVTAT
FT                   EGGRTLAAEAPSPLQKHLADGLNALPELEQATITLALERIVALMEQEGHAVEAAGEGSP
FT                   PILEMPTGGAPLESGLVV"
FT   misc_feature    complement(256579..256890)
FT                   /note="HMMPfam hit to PF01047, MarR family"
FT   misc_feature    complement(256774..256839)
FT                   /note="Predicted helix-turn-helix motif with score 1237
FT                   (+3.40 SD) at aa 80-101, sequence MTATAISREIHVSPSTVVGILD"
FT   CDS             257206..258234
FT                   /transl_table=11
FT                   /locus_tag="BP2217"
FT                   /product="putative regulator (SIS family)"
FT                   /note="Similar to Rhizobium meliloti putative
FT                   transcriptional regulator protein smb20276 TR:CAC48666
FT                   (EMBL:AL603642) (296 aa) fasta scores: E(): 6.8e-19, 34.53%
FT                   id in 304 aa"
FT                   /db_xref="GOA:Q7VWJ8"
FT                   /db_xref="InterPro:IPR001347"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWJ8"
FT                   /protein_id="CAE42494.1"
FT                   /translation="MFFIFSEIYHVFFILFRAMPPTPAPSMLETLQSLLDDLPAELQRA
FT                   ARWVAAHPAEVGLWSMRRQAQAVGVAPATMLRLARAAGCGSYEDFRAPFQQALTAAGGS
FT                   GWRDRAAELQAAQDAGAAPGHDVLTGLQTQAIGSIRALNPPAAFDAAARTLLAAGQVGF
FT                   LGTRSAFGIAHQMRYAYQLVRRNGLLIDGLGGAPAEQIDNLQAGDALVAISQAPYPAAT
FT                   VHLARQASQRGVTVVALTDDPLSPLALEAGHVLLFARPERERVYAEPAQRGPGSFFHTT
FT                   AGLLGLAEHLIARLAACGGETALARLAEIEARLQAEQVYWSPAHARRDKARPGRGMPRE
FT                   AA"
FT   misc_feature    257458..257523
FT                   /note="HMMPfam hit to PF00081, Iron/manganese superoxide
FT                   dismutases, alpha-hairpin domain"
FT   misc_feature    257659..258087
FT                   /note="HMMPfam hit to PF01380, SIS domain"
FT   CDS             258275..259615
FT                   /transl_table=11
FT                   /locus_tag="BP2218"
FT                   /product="putative aminotransferase"
FT                   /note="Similar to Rhizobium meliloti probable
FT                   aminotransferase protein smb20277 TR:CAC48667
FT                   (EMBL:AL603642) (447 aa) fasta scores: E(): 2.6e-118,
FT                   69.14% id in 444 aa, and to Bacillus sphaericus
FT                   adenosylmethionine-8-amino-7-oxononanoate aminotransferase
FT                   BioA SW:BIOA_BACSH (P22805) (455 aa) fasta scores: E():
FT                   5.2e-46, 34% id in 447 aa"
FT                   /db_xref="GOA:Q7VWJ7"
FT                   /db_xref="HSSP:1DKA"
FT                   /db_xref="InterPro:IPR015421"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWJ7"
FT                   /protein_id="CAE42495.1"
FT                   /translation="MSTTHVLHRSLRHTPPVAVRGEGVWLYDQAGRAYLDGSGGAAVSC
FT                   LGHNHPDVRAAMHAQIDALAYAHTGFFSTEIAERLADRLVADAPAGTSHAYFVSGGSEA
FT                   IEAALKMARQYFVEIGQPQHRHLVARRQSYHGNTLGALAVGGNEWRRAQFAPLLIDVAH
FT                   VAPCYAYRDQREDESAEQYGERLARELEDTFQRLGPDTVIAFVAEPVVGATAGALTAVP
FT                   GYFRRIREICDRYGILMIADEVMCGMGRTGTLYAVEQEEIVPDLITIAKGLGGGYQPIG
FT                   AVMAQGRIVDAMSKGSGFFQHGHTYLGHATACAASLAVQEVIRRDGLLARVRQQGDGLR
FT                   QRLMQALGAHPHVGDIRGRGLFLGVELVRDRATKATFDPELALHARVKREAMARGLMVY
FT                   PMGGTIDGRHGDHVLVAPPFIIADDELDQLVERLAGAIDAAIAQTRA"
FT   misc_feature    258341..259531
FT                   /note="HMMPfam hit to PF00202, Aminotransferase class-III"
FT   misc_feature    258989..259102
FT                   /note="ScanRegExp hit to PS00600, Aminotransferases
FT                   class-III pyridoxal-phosphate attachment site. Confirmed by
FT                   InterPro eMOTIF pattern match."
FT   CDS             259724..260728
FT                   /transl_table=11
FT                   /locus_tag="BP2219"
FT                   /product="putative cell surface protein"
FT                   /note="Similar to Rhizobium meliloti hypothetical
FT                   immunogenic protein smb20292 TR:CAC48682 (EMBL:AL603642)
FT                   (327 aa) fasta scores: E(): 8e-93, 73.62% id in 326 aa, and
FT                   to Brucella abortus 31 kDa immunogenic protein precursor
FT                   BcsP31 SW:BCSP_BRUAB (P12920) (329 aa) fasta scores: E():
FT                   3e-35, 36.69% id in 327 aa"
FT                   /db_xref="InterPro:IPR011852"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWJ6"
FT                   /protein_id="CAE42496.1"
FT                   /translation="MGKSVKHTLGHRKAFSLAAACAAVALAWAAPTPAAAQQKFVSIGT
FT                   GGVTGVYYAAGGAICRLVNKDRASHGVRCSVESTGGSVFNVNTIKAGELDLGVVQSDVG
FT                   FNAYNGEGQFKQGGAYKKLRSVFSIHPEPFTVLARKEAGIKSFEDFKGKRFNVGNPGSG
FT                   TRASMEELLASMGWTLKDFSLASELRPDEHGPALCDGKIDGFFYGVGHPSANIQDPTTT
FT                   CGAQLVSLTGPAVDKLVDKYPYYALATIPGGLYPNNPQDTKTYGVTATFVTSEDVPEQT
FT                   VYLVVKAVFDNFEDFKKLHPAFANLKAADMVKNGLSAPLHPGAQKYFKEKGLL"
FT   misc_feature    259724..259810
FT                   /note="Signal peptide predicted for BP2219 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.625 between residues 29 and 30"
FT   CDS             260835..263435
FT                   /transl_table=11
FT                   /locus_tag="BP2220"
FT                   /product="conserved inner membrane protein"
FT                   /note="Similar to Rhizobium meliloti hypothetical 88.3 kDa
FT                   protein smb20291 TR:CAC48681 (EMBL:AL603642) (827 aa) fasta
FT                   scores: E(): 1.1e-160, 54.67% id in 834 aa"
FT                   /db_xref="InterPro:IPR011853"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VWJ5"
FT                   /protein_id="CAE42497.1"
FT                   /translation="MKNESSTTTADLEQLVAEADRGGRHAGGVAGATLAAGALVWSLFQ
FT                   LWYASPLPFSLHWGVFNDTEARALHLGTAMFLGYLAYPATKRSARDRMPWYDWVLALAA
FT                   GFCGAYLYLFYNELAIRPGQPTSMDVATAVAGLLLLLEVTRRALGLPMTVLGAVFVLYA
FT                   LAGPWLPDVLAHRGASIERLMSHMWLTTEGVYGVALGVSVSYIFIFVLLGSLLDKCGAG
FT                   NYMMQVSFALLGHLRGGPAKVAVVSSAVNGLVSASSVANVVTGGIFTIPLMKKAGYGGV
FT                   RAGAIETASSVNGQIMPPVMGAAAFLMIEYVGIPYTDIIRHAILPASISYIALFYSVHL
FT                   EALKLGIEPMMAAGKPRTPLQKLAGWGMGISGTLIAMGLVYWIGVGVQAVAGAAAIWIL
FT                   LAMLVALNIWLLRVAARHPDLPTEIDVNHPVRPEPWPTVRAGLHFLIPIGILVWCLSVE
FT                   ELSAGLSAFWAAAATLLQMVTQRPLTAWFRGQAIAPAALLGWRDAIGGLQDDARNMIGI
FT                   AIACGTAGLIVGAITLTGLGLRMTAFVELVSMGNVLLMLIFTAIVCLILGLGMPTTANY
FT                   ILMATLMAPVVVELGAQNGLIIPLIAVHMFVFYYGIMADITPPVGLATFAAAAISGADP
FT                   IKTGVQGVTYALRTAVLPFMFVFNPLLLLIDVNSWTELILVAGSATLASLTFASATLGW
FT                   FRVRCTMLEIVVLLAVTFMLFRPDWLLDQVSERYQARPAAEVVQTAAALPHNGRLVAVL
FT                   RGINLEGDELTKTVAVALPALDEGETLQGEAAGRKRLTDAGLTIVALGDQVQIGGVRFG
FT                   STARRAGWEQGWDVLELRVPNPARPAEFWAYLPGLVLLALVWFAQGRRQRAAAR"
FT   misc_feature    join(260910..260978,261036..261089,261126..261179,
FT                   261207..261260,261273..261341,261414..261482,
FT                   261708..261776,261804..261863,261921..261989,
FT                   261999..262067,262377..262445,262473..262541,
FT                   262560..262628,262656..262724,262761..262829,
FT                   262857..262925,262944..262997,263349..263402)
FT                   /note="18 probable transmembrane helices predicted for
FT                   BP2220 by TMHMM2.0 at aa 26-48, 68-85, 98-115, 125-142,
FT                   147-169, 194-216, 292-314, 324-343, 363-385, 389-411,
FT                   515-537, 547-569, 576-598, 608-630, 643-665, 675-697,
FT                   704-721 and 839-856"
FT   repeat_region   263432..263463
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   263432..264484
FT   CDS             263534..264484
FT                   /transl_table=11
FT                   /locus_tag="BP2221"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TT88"
FT                   /db_xref="InterPro:IPR001584"
FT