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EBI DbfetchID BX640416; SV 1; linear; genomic DNA; STD; PRO; 349354 BP. XX AC BX640416; XX DT 09-AUG-2003 (Rel. 76, Created) DT 23-OCT-2008 (Rel. 97, Last updated, Version 8) XX DE Bordetella pertussis strain Tohama I, complete genome; segment 6/12 XX KW complete genome. XX OS Bordetella pertussis OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Bordetella. XX RN [2] RP 1-349354 RA Sebaihia M.; RT ; RL Submitted (06-AUG-2003) to the EMBL/GenBank/DDBJ databases. RL Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute, RL Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail: RL ms5@sanger.ac.uk XX RN [3] RA Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E., RA Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., RA Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A., RA Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I., RA Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., RA Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., RA Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., RA Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., RA Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., RA Barrell B.G., Maskell D.J.; RT "Comparative analysis of the genome sequences of Bordetella pertussis, RT Bordetella parapertussis and Bordetella bronchiseptica"; RL Nat. Genet. 35(1):0-0(2003). XX DR EMBL-CON; BX470248. DR RFAM; RF00005; tRNA. XX FH Key Location/Qualifiers FH FT source 1..349354 FT /organism="Bordetella pertussis" FT /strain="Tohama I" FT /mol_type="genomic DNA" FT /db_xref="taxon:520" FT CDS 189..926 FT /transl_table=11 FT /locus_tag="BP1646" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1170 TR:Q9I4G7 (EMBL:AE004547) (244 aa) fasta FT scores: E(): 2.6e-42, 54.27% id in 234 aa, and to Bacillus FT subtilis YjbE protein TR:O31603 (EMBL:Z99110) (218 aa) FT fasta scores: E(): 2.6e-26, 46.66% id in 180 aa. Also FT similar to BP2538 (69.456% identity in 239 aa overlap), and FT to BP2539 (45.982% identity in 224 aa overlap)." FT /db_xref="GOA:Q7VXT7" FT /db_xref="InterPro:IPR005496" FT /db_xref="UniProtKB/TrEMBL:Q7VXT7" FT /protein_id="CAE41934.1" FT /translation="MVEAIETFHWGAIFQIVLIDILLGGDNAVVIALACRNLPHRQRIK FT GILWGTAGAVLLRVLLIAFALVLLDIPFLKALGCLLLVWIGVKLLAPHEDAHGNITGGT FT SVLAAIRTIILADFAMSLDNVIAIAGAAQNAQADHQLYYVIFGLCVSVPIIVWGSTLVL FT KLIDRFPLVVTLGAGLLGWIAGGMLITDIYVVERWGEPAPMLKLAVEAAGALVVVAAGK FT WLAARRRHARPTHDESASTTPGG" FT misc_feature join(219..287,324..392,609..677,696..764,807..866) FT /note="5 probable transmembrane helices predicted for FT BP1646 by TMHMM2.0 at aa 11-33, 46-68, 141-163, 170-192 and FT 207-226" FT repeat_region 923..954 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 923..1975 FT CDS 1025..1975 FT /transl_table=11 FT /locus_tag="BP1647" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTC0" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTC0" FT /protein_id="CAE41935.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN" FT misc_feature 1283..1348 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 1406..1939 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(1944..1975) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 1972..2163 FT /pseudo FT /transl_table=11 FT /locus_tag="BP1648" FT /product="putative branched chain amino acid transport FT permease (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. This CDS is the C-terminal region of FT BP2088. Similar to the C-terminal regions of Escherichia FT coli high-affinity branched-chain amino acid transport FT system permease protein LivM or b3456 SW:LIVM_ECOLI FT (P22729) (425 aa) fasta scores: E(): 0.035, 42.3% id in 52 FT aa, and to Streptomyces coelicolor putative branched chain FT amino acid transport permease Sc7h2.24 TR:Q9S2J3 FT (EMBL:AL109732) (608 aa) fasta scores: E(): 5.6e-05, 44.82% FT id in 58 aa" FT misc_feature join(1984..2052,2065..2133) FT /note="2 probable transmembrane helices predicted for FT BP1648 by TMHMM2.0 at aa 5-27 and 32-54" FT CDS 2160..2942 FT /transl_table=11 FT /gene="livG" FT /locus_tag="BP1649" FT /product="high-affinity branched-chain amino acid FT transport, ATP-binding protein" FT /note="Similar to Escherichia coli high-affinity FT branched-chain amino acid transport ATP-binding protein FT LivG or B3455 or Z4825 or Ecs4302 SW:LIVG_ECOLI (P22730) FT (255 aa) fasta scores: E(): 3.2e-33, 46.58% id in 249 aa, FT and to Deinococcus radiodurans branched-chain amino acid FT ABC transporter, ATP-binding protein Dr0283 TR:Q9RXM7 FT (EMBL:AE001889) (290 aa) fasta scores: E(): 7.8e-35, 47.65% FT id in 256 aa" FT /db_xref="GOA:Q7VXT6" FT /db_xref="HSSP:1G9X" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VXT6" FT /protein_id="CAE41937.1" FT /translation="MSLLEIHGLGITFGGLRAVHDVAFSVEPGEIVSVIGPNGAGKTTL FT FNMISGIYRPGAGRVVLDRDDVTGMAPFRLARRGMSRTFQNLQIFQNMTVLENAIAGFH FT LQEQGALLSDLFNLRASRARARRAEEGARALLQRVGLERAAEREAASLSYGSLKRLEIA FT RALALQPKVLLLDEPAAGCNAVETEEIDHLIAEVAATGVAILLVEHDMKMVMRISNHIV FT VLDHGEKIAEGPPDAISRDPAVIAAYLGTDSQPGDRPC" FT misc_feature 2244..2840 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 2265..2288 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 2936..3637 FT /transl_table=11 FT /gene="livF" FT /locus_tag="BP1650" FT /product="high-affinity branched-chain amino acid FT transport, ATP-binding protein" FT /note="Similar to Escherichia coli high-affinity FT branched-chain amino acid transport ATP-binding protein FT LivF or B3454 SW:LIVF_ECOLI (P22731) (237 aa) fasta scores: FT E(): 1.9e-34, 46.12% id in 232 aa, and to Streptomyces FT coelicolor putative branched chain amino acid transport FT ATP-binding protein Sc7h2.26 TR:Q9S2J1 (EMBL:AL109732) (238 FT aa) fasta scores: E(): 4.3e-42, 55.55% id in 234 aa" FT /db_xref="GOA:Q7VXT5" FT /db_xref="HSSP:1JI0" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VXT5" FT /protein_id="CAE41938.1" FT /translation="MLTVQGLRSCYGRIEVLHGIDLQVDSGEIVTVVGANGAGKTTLLR FT CLSGVQPVSAGAITFRGEALAAVPAHRRLARGLAHSPEGRQIFTNLSVEENLRLGAYLY FT ADDRVERDMDDAFQMFPILREKRHLAAGGLSGGQQQMLAMARALMGRPSCLLLDEPSMG FT LAPIIVQQIFDVIRGLKALGVTVLLIEQNAYGALQIADRGYVMETGNITMQGAASALIA FT DPRIRAAYLGI" FT misc_feature 3014..3562 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 3035..3058 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 3335..3379 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature." FT CDS 3877..4479 FT /transl_table=11 FT /locus_tag="BP1651" FT /product="putative TetR-family transcriptional regulator" FT /note="Similar to Bacillus halodurans transcriptional FT regulator Bh2958 TR:Q9K8P5 (EMBL:AP001517) (215 aa) fasta FT scores: E(): 8e-09, 28.1% id in 185 aa, and to Pseudomonas FT fluorescens putative transcriptional regulator Pfi2 FT TR:Q9RFR4 (EMBL:AF173683) (207 aa) fasta scores: E(): FT 1.2e-07, 24.06% id in 187 aa" FT /db_xref="GOA:Q7VXT4" FT /db_xref="InterPro:IPR012287" FT /db_xref="UniProtKB/TrEMBL:Q7VXT4" FT /protein_id="CAE41939.1" FT /translation="MARTRSADYENIRDTIIERAAAMFARQGYSETSIGDIARACECSK FT SRLYHYFDSKEAVLRDMLTTHVDSLLERCRQVLYGSNEPKTRFLQIVKLFLEIYATSRD FT RHVVMLTCLDALPEDQRKALIAKQRELIAYVRDALLQLRPDMAANRTLAHVDTMLFFGM FT INWTYTWYKADGSVSPDALAERTVQLFLDGYLNLPSA" FT misc_feature 3922..4062 FT /note="HMMPfam hit to PF00440, Bacterial regulatory FT proteins, tetR family" FT misc_feature 3970..4035 FT /note="Predicted helix-turn-helix motif with score 1762 FT (+5.19 SD) at aa 32-53, sequence TSIGDIARACECSKSRLYHYFD" FT CDS complement(4455..5369) FT /transl_table=11 FT /locus_tag="BP1652" FT /product="putative oxidoreductase (Partial)" FT /note="Partial CDS, it lacks the N-terminal region. Similar FT to Pseudomonas putida putidaredoxin reductase camA FT SW:CAMA_PSEPU (P16640) (422 aa) fasta scores: E(): 5.1e-34, FT 40.98% id in 283 aa, and to Rhizobium meliloti putative FT oxidoreductase protein smc00914 TR:CAC45363 (EMBL:AL591785) FT (405 aa) fasta scores: E(): 6.1e-47, 50.5% id in 299 aa" FT /db_xref="GOA:Q7VXT3" FT /db_xref="HSSP:1D7Y" FT /db_xref="InterPro:IPR013027" FT /db_xref="UniProtKB/TrEMBL:Q7VXT3" FT /protein_id="CAE41940.1" FT /translation="MTTGAAPRPLPAAFAGRSNVFELRNLADVQRLQPAFLAGRRLLVL FT GGGYIGLETAAVAAQAGLSVQVVERASRVLERVACPATAAAIRALHQRHGVLIHEGRTV FT AGTEGDEALTGVELDNGLRIACDLVVAGVGVAPQTALAEAAGIDCDDGILVDAYGRTSA FT PDVWAAGDCARFVLGGEPARLESVQNAIDQAEAVADDMLGQGRPYQPVPWFWSDQYDMK FT LQIVGLNRGYDAVVSHASAKGESHWYFRADRLISVDALNDGRAYMVGKKLLEAGRAVGR FT GEVERPGFEPMQLLRDQAEGRLR" FT misc_feature complement(4854..5363) FT /note="HMMPfam hit to PF00070, Pyridine FT nucleotide-disulphide oxidoreductase" FT misc_feature complement(5151..5216) FT /note="Predicted helix-turn-helix motif with score 988 FT (+2.55 SD) at aa 52-73, sequence LETAAVAAQAGLSVQVVERASR" FT variation complement(5370..5372) FT /note="There is a large deletion in pertussis, relative to FT parapertussis and bronchiseptica, upstream this codon" FT repeat_region 5704..5735 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 5704..6756 FT CDS 5806..6756 FT /transl_table=11 FT /locus_tag="BP1653" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q84CT8" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q84CT8" FT /protein_id="CAE41941.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT misc_feature 6064..6129 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 6187..6720 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(6725..6756) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(6753..8309) FT /transl_table=11 FT /gene="wcbQ" FT /locus_tag="BP1654" FT /product="putative capsular polysaccharide biosynthesis FT protein" FT /note="Similar to Rhizobium meliloti capsular FT polysaccharide biosynthesis protein RkpI or R00574 or FT smc02270 SW:RKPI_RHIME (Q52938) (538 aa) fasta scores: E(): FT 1.9e-18, 29.24% id in 489 aa, and to Burkholderia mallei FT WcbQ TR:Q9AI31 (EMBL:AF285636) (511 aa) fasta scores: E(): FT 6e-45, 39.2% id in 500 aa" FT /db_xref="GOA:Q7VXT2" FT /db_xref="InterPro:IPR017849" FT /db_xref="UniProtKB/TrEMBL:Q7VXT2" FT /protein_id="CAE41942.1" FT /translation="MAETFWLALAPAWAGGLVLSWALEALLRPPVQPPWRRPAWMLLLH FT AGVWTLLFALELALFRRPYFGAINVLAIEAVLVLVSAAKARVLREPFVYSDFEYFTDAL FT RHPRLYLPFLGWPAALLLACGYGLALWAGLALESSATGARTAAWAAHAAPAPFWGATLA FT LAAAGAALAVLAGHRDAGLTYEADQDLRRLGLVATLWLYGRAERQPWTPAMRSGPFGAA FT PAAAGAGPLPHLVSVQSESFFDARRVFGTLKPEVLAGLDALRAEALEHGQLEVAAWGAN FT TVRTEFAFLTGLAASALGVHRYNPYRRLRQPQPSLASHLRQRGYRTVCVHPFHASFYGR FT DRVMPWLGFDEFVHLDAFADAPRAGPYVADAALARYVAERLAGQGSQPLYVHVITMENY FT GPLHWESVDAADAAAVLDGPLAPGCADLVAYARHLRNADAMFTGLAAAMRGLSRPAGLC FT VYGDHVPIMAEVYRRLGEPDGRTDYLIWQAGGQGSAAPGLRRVDELAQVFLRHMGLAPP FT G" FT misc_feature complement(join(7779..7844,7905..7970,8049..8114, FT 8130..8195,8241..8294)) FT /note="5 probable transmembrane helices predicted for FT BP1654 by TMHMM2.0 at aa 5-23, 38-60, 65-87, 113-135 and FT 155-177" FT misc_feature complement(7893..7940) FT /note="ScanRegExp hit to PS00453, FKBP-type peptidyl-prolyl FT cis-trans isomerase signature 1." FT misc_feature complement(8244..8309) FT /note="Signal peptide predicted for BP1654 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.701) with cleavage site FT probability 0.627 between residues 22 and 23" FT CDS complement(8302..9075) FT /transl_table=11 FT /gene="wcbP" FT /locus_tag="BP1655" FT /product="putative oxidoreductase" FT /note="Similar to Myxococcus xanthus hypothetical FT oxidoreductase in uraA 5'region SW:YURA_MYXXA (P25970) (258 FT aa) fasta scores: E(): 1.4e-15, 39.35% id in 216 aa, and to FT Burkholderia mallei WcbP TR:Q9AI32 (EMBL:AF285636) (262 aa) FT fasta scores: E(): 2.1e-33, 44.26% id in 253 aa" FT /db_xref="GOA:Q7VXT1" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VXT1" FT /protein_id="CAE41943.1" FT /translation="MRSNWPACVLLTGASGEIGRALALEYAAPGVRLILQGRRLGRLDE FT LVGLCRERGATLSVAAFDIRATERLLAWLEEVNATHPPDLAIINADVNIDIGPDRAGER FT WEDVCMVMDTNLRAAQATVHGLLPAMRARGQGQIALMSSLAAWRGLPDTPSYSASKAAV FT KAYGEALRDWLAPQGVRVNVIMPGYVASPMCAAMPGPKPFLWPPGKAARAIRRGLAANR FT ARISFPFPLNLGCWFLGLAHPAVSSRLLRWLGYGG" FT misc_feature complement(8500..9057) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT misc_feature complement(8563..8649) FT /note="ScanRegExp hit to PS00061, Short-chain FT dehydrogenases/reductases family signature." FT misc_feature complement(9007..9075) FT /note="Signal peptide predicted for BP1655 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.970) with cleavage site FT probability 0.957 between residues 23 and 24" FT CDS complement(9134..10084) FT /transl_table=11 FT /locus_tag="BP1656" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q84CT8" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q84CT8" FT /protein_id="CAE41944.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT repeat_region 9134..9165 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(9134..10186) FT misc_feature complement(9170..9703) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(9761..9826) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT CDS 10189..11136 FT /transl_table=11 FT /locus_tag="BP1657" FT /product="putative exported protein (Pseudogene)" FT /note="No significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VXT0" FT /protein_id="CAE41945.1" FT /translation="MRPGPWLMALAACAVASSAWGQQGLRLSKDDLQKRANGVLALMSF FT SIVPDITTSALNIAGGGGSTSGSTEFYMTQLGGGDTISKSVPLYLEGVLAASRYDPTFV FT ATQGADSRRIPAKWNSVSATGGIGWDFPLTDELKLRPIFNVALGNVTSDLRAASWYVGR FT QTGQDVDFLDRGSLNAYGLGGSLMLDYEHYRPGYEVDVELRYSDIRLRSFDSSAAVRGQ FT ATAQSANLWARYRAPTGATLLQRPLRYVLELTHSEFLGDQRGVLGFDRLTSVGAGLELD FT SSAYDVFVTRTRLVGRYVFGNNVSGFSVGLAVSF" FT CDS complement(11190..12983) FT /transl_table=11 FT /locus_tag="BP1658" FT /product="probable two-component sensor histidine kinase" FT /note="The C-terminal region of this CDS is Similar to FT Deinococcus radiodurans sensor histidine kinase Dr0577 FT TR:Q9RWT8 (EMBL:AE001916) (590 aa) fasta scores: E(): FT 1.4e-05, 31.27% id in 227 aa, and to Pseudomonas aeruginosa FT probable two-component sensor pa1979 TR:Q9I2C8 FT (EMBL:AE004624) (216 aa) fasta scores: E(): 1.6e-06, 32.38% FT id in 176 aa" FT /db_xref="GOA:Q7VXS9" FT /db_xref="InterPro:IPR003594" FT /db_xref="UniProtKB/TrEMBL:Q7VXS9" FT /protein_id="CAE41946.1" FT /translation="MRRAWAVLAWLWLALPAAVLAEPRHVTTAQFLLQDEAAAAAPDLV FT PARGPPGDWQSVALPHAGLQRRVVPDPQAGDAALAWYRLDLDAGGVDDPVLYLPRWQTV FT GRLAVYGDGKLLYRSGGSAQWSGFNRPVWLPLAAGGAPPATLLLLRISSLDGAGAGLST FT VWVGAAGELRWRYELRRWLQQDLPYLASAVFLALGLFALGVWAVRRKESIYGLFFAASV FT VFYLRCLHYHAGPFQLLLDDEWFSWLTITSVGWLAIASYFFAFRLHGRAYPRSERAMLA FT GMGALTAAMLPVWQIHPHLVLLAPLAYLGITVVALFACLLAVWGAWRARSRDGLVLACW FT NLAAIPVAVHDMLLQNYRLSMEHVYLLPYTGIGMFVIFLYVAYRRYVNALAQAAGAQAT FT LQRRLAERERELERSHRRLREIERTRILAGERERLMQDMHDGLGSSLVSALRMVQHGNS FT SEGAVAQVLQECLDDLRLTIDSLEPAQTDLALLLATLRFRLGPRLQAAGLALDWRVGPL FT PPVSWLTPPAALHVLRILQEVFTNILKHARARRLTVSTRLEPAHAVIAVIDDGAGFRGG FT RPAPAAASPGRGLSGMQARIL" FT misc_feature complement(11265..11402) FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, phytochrome-like ATPase" FT misc_feature complement(join(11835..11891,11922..11978,12000..12065, FT 12096..12149,12189..12251,12282..12347,12363..12419)) FT /note="7 probable transmembrane helices predicted for FT BP1658 by TMHMM2.0 at aa 188-207, 212-234, 244-265, FT 278-296, 306-328, 335-354 and 364-383" FT misc_feature complement(12921..12983) FT /note="Signal peptide predicted for BP1658 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.984 between residues 21 and 22" FT CDS complement(12997..13671) FT /transl_table=11 FT /locus_tag="BP1659" FT /product="response regulatory protein" FT /note="Similar to Streptomyces reticuli response regulatory FT protein SenR TR:Q9RIM0 (EMBL:Y14336) (217 aa) fasta scores: FT E(): 1.8e-15, 34.52% id in 223 aa, and to Streptomyces FT coelicolor AbsA2 or Sce8.19 TR:Q53894 (EMBL:U51332) (222 FT aa) fasta scores: E(): 3.9e-16, 30.88% id in 204 aa" FT /db_xref="GOA:Q7VXS8" FT /db_xref="InterPro:IPR000792" FT /db_xref="UniProtKB/TrEMBL:Q7VXS8" FT /protein_id="CAE41947.1" FT /translation="MQTCTPARPAGSLRIAIVEDDPAFRHAVVAAIAHEPGMSVLAQAQ FT TCADALAMLQGPPADVLLVDLGLPDGSDIDVIWQARRLWRDCGIMVNTMFGDDVHVLRS FT IEAGACGYLLKDSEPAGIVRDICALRDGGSPISPLIARQLLDRLREGLPPAEPPAATAL FT SPRERQVLERITLGYTYDEIASELEVSRHTVQTFVRRIYRKLQVHSKVDAINAAPGLRP FT HE" FT misc_feature complement(13003..13194) FT /note="HMMPfam hit to PF00196, Bacterial regulatory FT proteins, luxR family" FT misc_feature complement(13060..13143) FT /note="ScanRegExp hit to PS00622, Bacterial regulatory FT proteins, luxR family signature." FT misc_feature complement(13075..13140) FT /note="Predicted helix-turn-helix motif with score 995 FT (+2.58 SD) at aa 178-199, sequence YTYDEIASELEVSRHTVQTFVR" FT misc_feature complement(13294..13635) FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain" FT CDS 13840..16875 FT /transl_table=11 FT /gene="sphB2" FT /locus_tag="BP1660" FT /product="autotransporter" FT /note="sequence contains 6 Ns. to be corrected" FT /db_xref="GOA:Q7VXS7" FT /db_xref="InterPro:IPR005546" FT /db_xref="UniProtKB/TrEMBL:Q7VXS7" FT /protein_id="CAE41948.1" FT /translation="MPARAARAGLLLAGALACSAAAHAELLGVDGGGPSGGAGASGPGL FT AGQPGNGPAPGLGGDRTMPRPGGNGGAGGGAGAASGGSELIHYGGGGGGSDSGGGGGIA FT IIDPMGAAGGNGGGVAQALSAGADLQSSRGGAGDDGGAMSSGSEPGGGGGGGGSGAAVL FT AGGGYRALAVSIVGGRGGAGGAGFESGGGGGGGHGIRIDAADVRIELLATQAAGGQGGD FT GGAGSGSSGGGGDGGHGLAGAANDLRLHVAADSTLRGGDGGASRPVTHRAGAGGPDGTG FT LSLSASRWQVKTAGLIQGGNGGRGEASREFDGGKGGAGGAGLALAGNMGTLHNRGRIQG FT GQGATGGTSVLAAPGAAGAGGVGVRIAGNGNRLVNAGRIAGGASADGQQADAVRIDGAG FT NTFELHAGSVLQGNAVATGSANVLALGGAQPGVFDVSALAAGAPAAWSGVPRYAGFAAY FT EKTGAGTWRLTGGNAAALSWTVRAGRLAVDAEMAGSAMTVAAGGTLGGTGTVGDTTVRA FT GGALAPGNSIGTLRVAGDLVFEPGSRFEVEADPDGTASDRVVVSGTADIRGGAVLHVGP FT EGGFEARQRYVILTAGQRRGQFDAVGSGYAYLAPALSYDATSVALILQRRGAPGSGDLA FT FADLADTANQRATARAVETLPAAHPVYRAIETLPEGAPPAAFDALSGEVHASTRSALLT FT GARQAQRVNLGRLRDHLGLAWQAGAPMAASGGAPGAAALPGAPSPAWAEVVGAWQRLDG FT DGNAAQVRQHVGGLFVGADTALANGWRVGGSLGFTDGRIEVDARASQTDVASYTAALYG FT GRAWDAGAGRLNLLAGAAYTWHDIASERRVDVGDLRQELTADYGASTTQLFTELSYAMP FT LGMTAELEPFAGLAWNQLRVRGFTETGGSAALSGASSRDDMAITTLGARVAAPLGAGAT FT LRAMAGWRHAFGDRTPQSTLAFGQGSAFEVAGAPIARDAALLGVGAGIEVARNAFLDAA FT YAGEFGGGNRQHTASVVLRWRF" FT misc_feature 13840..13911 FT /note="Signal peptide predicted for BP1660 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.974 between residues 24 and 25" FT misc_feature 13861..13893 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 15877..15963 FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign." FT CDS complement(16889..17188) FT /transl_table=11 FT /locus_tag="BP1662" FT /product="putative DNA-binding protein" FT /note="Similar to Vibrio cholerae hypothetical protein FT Vca0469 TR:Q9KMA5 (EMBL:AE004379) (104 aa) fasta scores: FT E(): 7.4e-05, 33.69% id in 92 aa, and to Agrobacterium FT tumefaciens Agr_c_3184p TR:AAK87504 (EMBL:AE008095) (95 aa) FT fasta scores: E(): 3.6e-05, 32.94% id in 85 aa" FT /db_xref="GOA:Q7VXS6" FT /db_xref="InterPro:IPR001387" FT /db_xref="UniProtKB/TrEMBL:Q7VXS6" FT /protein_id="CAE41949.1" FT /translation="MKKDNTVFNDLQASLKQAVAIRQGKMPPSRVFKVETVDVKATREK FT THMSQTEFAKAIHVSVRTLQNWEQGHRNPTDPAMALLKIVASAPDIAVRALRTA" FT misc_feature complement(16901..17074) FT /note="HMMPfam hit to PF01381, Helix-turn-helix" FT misc_feature complement(16982..17047) FT /note="Predicted helix-turn-helix motif with score 2270 FT (+6.92 SD) at aa 48-69, sequence MSQTEFAKAIHVSVRTLQNWEQ" FT CDS complement(17191..>17385) FT /transl_table=11 FT /locus_tag="BP1663" FT /product="conserved hypothetical protein (partial)" FT /note="Partial CDS (lacking the N-terminal region). Similar FT to Vibrio cholerae hypothetical protein Vca0468 TR:Q9KMA6 FT (EMBL:AE004379) (110 aa) fasta scores: E(): 0.00013, 37.73% FT id in 53 aa, and to Rhizobium meliloti hypothetical protein FT Smc01995 TR:Q92MY0 (EMBL:AL591790) (128 aa) fasta scores: FT E(): 0.0066, 34.92% id in 63 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VXS5" FT /protein_id="CAE41950.1" FT /translation="RGGGGIRKMHYGRQGTGKRGGIRVIYYWISQDCQIYMLAAYAKSK FT KINLTPDEIAALRELVKEL" FT variation complement(17383..17385) FT /note="There is a ~100 bp deletion (upstream of this codon) FT in pertussis relative to parapertussis an bronchiseptica" FT CDS complement(17503..18126) FT /transl_table=11 FT /gene="gst" FT /locus_tag="BP1664" FT /product="glutathione S-transferase" FT /EC_number="2.5.1.18" FT /note="Similar to Escherichia coli glutathione FT S-transferase Gst or B1635 or Z2647 or Ecs2344 SW:GT_ECOLI FT (P39100) (201 aa) fasta scores: E(): 8.3e-17, 34.15% id in FT 202 aa, and to Rhizobium meliloti putative glutathione FT S-transferase protein TR:CAC45528 (EMBL:AL591785) (206 aa) FT fasta scores: E(): 3.8e-45, 57.71% id in 201 aa" FT /db_xref="GOA:Q7VXS4" FT /db_xref="HSSP:1N2A" FT /db_xref="InterPro:IPR012335" FT /db_xref="UniProtKB/TrEMBL:Q7VXS4" FT /protein_id="CAE41951.1" FT /translation="MSRWTFYTAPGTCALATHIALHEAGADFDLVKLDFGATQQQSPDY FT LRVNPKGRVPALATEHGVLTENPALLAFIAQSFPQAQLAPLGDPFAFARMQELANYLAS FT TAHVAHAHKRRGARWADDPAAHEAMRAKIPENMTAIAGYLESQIIGPWALGERFSVVDG FT YLYTVGSWMEGDSVDMTRFPKLADYLARVGARPAVQRALAEMNG" FT misc_feature complement(17539..18117) FT /note="HMMPfam hit to PF00043, Glutathione S-transferase, FT C-terminal domain" FT CDS 18370..19239 FT /transl_table=11 FT /gene="tfdA" FT /locus_tag="BP1665" FT /product="alpha-ketoglutarate-dependent FT 2,4-dichlorophenoxyacetate dioxygenase" FT /EC_number="1.14.-.-" FT /note="Similar to Alcaligenes eutrophus FT alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate FT dioxygenase TfdA SW:TFDA_ALCEU (P10088) (287 aa) fasta FT scores: E(): 3.2e-37, 43.21% id in 280 aa, and to FT Alcaligenes denitrificans 2,4-d dioxygenase TfdA TR:Q9KX47 FT (EMBL:U32188) (287 aa) fasta scores: E(): 2.3e-34, 41.28% FT id in 281 aa" FT /db_xref="GOA:Q7VXS3" FT /db_xref="HSSP:1GY9" FT /db_xref="InterPro:IPR003819" FT /db_xref="UniProtKB/TrEMBL:Q7VXS3" FT /protein_id="CAE41952.1" FT /translation="MTITITPIQGEIAASIGGIDVRRGVTDDQVQAIERALDQYIVVVL FT RGQPLDDDLQQDFIQRFGPAIVTNTIKELTSRRSHRPHLLDITTVDEHGEPLKDRSFMK FT LYMLANQLWHSDGSHIQPPTRLTALSTRMLPSDPPDTEFADMRAAWDALPADQQEQLLD FT LQAEHSIAHSRTLLGMEVDQFSDDSLNRRPPVQHSLVRTNPRTGRRSLYLSGHASHIIG FT WPVEQGRALLQQLTEHATQRQFVYAHAWQMDDLVMWNNAASMHRALPYTGTEPRLLRWS FT GVTELEPV" FT misc_feature 18649..18696 FT /note="ScanRegExp hit to PS00589, PTS HPR component serine FT phosphorylation site signature." FT misc_feature 19171..19188 FT /note="ScanRegExp hit to PS00343, Gram-positive cocci FT surface proteins 'anchoring' hexapeptide." FT CDS complement(19217..20161) FT /transl_table=11 FT /locus_tag="BP1666" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa2115 TR:Q9I200 (EMBL:AE004639) FT (317 aa) fasta scores: E(): 2.2e-09, 22.48% id in 298 aa, FT and to Rhizobium meliloti LysR family transcriptional FT regulator, probable Sma0557 TR:AAK64948 (EMBL:AE007221) FT (295 aa) fasta scores: E(): 3.3e-07, 26.15% id in 260 aa" FT /db_xref="GOA:Q7VXS2" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VXS2" FT /protein_id="CAE41953.1" FT /translation="MKLPTPVQIETICTVDRLRTFTAAAAYLHTTQSAISARVREVEEM FT LGVILFKRNGRNVETTLDGRRFVEATAPLQQRLADFMGTFLEPHAISGRIRLAVGNSSM FT GRVSSMLSAIEKVLPNICFDLEVMYAAEILRDLEAGRTDIGVFHTPSRLDSKLFIHTSI FT GTEPTQWLMSGALRADFERRSPGFGLQTLLDHCQIWCVPKPAFYFDQAIESIASHGGKI FT RRLSTSGNMPATVDILLAHGGIGLITDHLSQAHCQNGSLVAAFDGISPPGFDYVLACAR FT SRQSHLLGTVMEIATAAVHAGAAAPALRPVPAR" FT misc_feature complement(19724..20140) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(20012..20104) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT misc_feature complement(20042..20107) FT /note="Predicted helix-turn-helix motif with score 1557 FT (+4.49 SD) at aa 19-40, sequence RTFTAAAAYLHTTQSAISARVR" FT CDS complement(20247..21218) FT /transl_table=11 FT /locus_tag="BP1667" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Sma1927 TR:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: FT E(): 4.3e-37, 36.66% id in 300 aa, and to Pseudomonas FT putida hypothetical 34.5 kDa protein in clcB-clcD FT intergenic region precursor SW:YCLC_PSEPU (Q47100) (329 aa) FT fasta scores: E(): 8.6e-37, 37.82% id in 312 aa" FT /db_xref="GOA:Q7VXS1" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VXS1" FT /protein_id="CAE41954.1" FT /translation="MLPRNILLACSGIVGMLAVPAHSDQAYPSQPIRIIVPIAAGGSTD FT VLARSVAQELGKTLGATVVVENKPGAAGAIGAQAVARAAPDGYTLLLTSPDPITVLPNY FT KSNLHYDAAADFAPIQLIAEINYVFATRTDFPAQDLAAFLKMAQQSPGKYTFSSAGTGS FT NTQLVTEMLRQRLGVDMVHVPYQGSGPALIAVASGEVDVQATSMPSMKALYDAGRLKAL FT AVTSEQRFKALPAVPTMQESGVNDFVLSAWFGVFAPAGTPAPIQEKLDNALGKVMSSPE FT IRTRLDSLSMTARPMSLAAFGAYLDTERQRWKTVIDIVGLKD" FT misc_feature complement(21150..21218) FT /note="Signal peptide predicted for BP1667 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.880 between residues 23 and 24" FT CDS complement(21286..22059) FT /transl_table=11 FT /locus_tag="BP1668" FT /product="probable short-chain dehydrogenase" FT /note="Similar to Pseudomonas aeruginosa probable FT short-chain dehydrogenase Pa5524 TR:Q9HT49 (EMBL:AE004965) FT (260 aa) fasta scores: E(): 1.6e-22, 38.43% id in 255 aa, FT and to Streptomyces cinnamonensis monensin polyketide FT synthase putative ketoacyl reductase SW:DHKR_STRCM (P41177) FT (261 aa) fasta scores: E(): 7.4e-21, 36.92% id in 260 aa" FT /db_xref="GOA:Q7VXS0" FT /db_xref="HSSP:1Q7B" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VXS0" FT /protein_id="CAE41955.1" FT /translation="MNDRLPVAVVSGAAHGIGWAISRRLAEEGHEIVLLDRDEAALEAR FT WQALRATGHAARVCQVDLSDRAQVLALARRLSEPLQRVRVLVNNAGISPKRNGARIGFA FT AVALELDWRPAVETNLTAALILSELVIPAMKSHGRGRIINIGSRVGRSPTGTSALASMP FT YLVTKTAMQGMTRAVARQLAPHGITVNGIAPGRIQTAMGSNVQPALHAAILADIPVGRW FT GAPADVAHVAAFLASEHAGFITGATVDVNGGALML" FT misc_feature complement(21310..21402) FT /note="HMMPfam hit to PF00678," FT misc_feature complement(21460..22044) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT CDS complement(22056..23252) FT /transl_table=11 FT /gene="lldA" FT /locus_tag="BP1669" FT /product="lactate dehydrogenase" FT /note="Similar to Neisseria meningitidis lactate FT dehydrogenase LldA or Nmb1377 TR:Q51135 (EMBL:U58911) (390 FT aa) fasta scores: E(): 3.4e-45, 36.05% id in 380 aa, and to FT Pseudomonas aeruginosa L-lactate dehydrogenase LldA or FT Pa2382 TR:Q9I197 (EMBL:AE004664) (383 aa) fasta scores: FT E(): 4.7e-49, 38.48% id in 382 aa" FT /db_xref="GOA:Q7VXR9" FT /db_xref="HSSP:1KBI" FT /db_xref="InterPro:IPR017934" FT /db_xref="UniProtKB/TrEMBL:Q7VXR9" FT /protein_id="CAE41956.1" FT /translation="MKTHDALQRRALCIDDLRAWARKALPKGLFEFVDRGTEDEFLLSR FT NRRSLDELRLLPRVMRDVSRRNCSTHYFGQASSMPMIIAPTGAAGLLAYEGEYLMAKAA FT ARAGIPFVLSTASIVSMERVAQAGGDLWFQLYMLPDLGASYRLMDRARNAGYRALMVTL FT DTPVSPNREYNVRNHFTLPMQISSRNALDVMRRPAWIWNVFFRYLLRNGVPMLENYPDE FT YRQRLDASGKGRMSLPKTDSITWESLRALRRHWRGPLIAKGILHPEDARMARDCGVDAI FT VVSNHGGRNFDAAATPIEALPRIVDEIADKAEVFVDSGFRRGVDVAKALALGARGVLLG FT RAPLWGVASAGEPGALHALELMREELLRSMAFLGCESLAALDRGLLAPATLPRNGGWP" FT misc_feature complement(22089..23192) FT /note="HMMPfam hit to PF01070, FMN-dependent dehydrogenase" FT CDS complement(23283..24233) FT /transl_table=11 FT /locus_tag="BP1670" FT /product="putative hydrolase" FT /note="Similar to Burkholderia solanacearum conserved FT hypothetical protein Rsc1824 TR:CAD15526 (EMBL:AL646066) FT (319 aa) fasta scores: E(): 1.8e-19, 35.39% id in 308 aa" FT /db_xref="GOA:Q7VXR8" FT /db_xref="HSSP:1GTT" FT /db_xref="InterPro:IPR002529" FT /db_xref="UniProtKB/TrEMBL:Q7VXR8" FT /protein_id="CAE41957.1" FT /translation="MKLGRFSYRHRAAAHVNLAAIVRRDGQECALDLAAVRAARPELAL FT PASMEAVIRLGRAGVDRCNEALAWASREGAASWFTPAADLAWRLPLEVGCCVAAGRNFA FT SHVNEGKAFWDGQASAAGLNQDMPAGFIKIASVMTPHDSAVARPCGVLAFDYEVEVAAV FT LGGPVPLGTPPERALEHVFGYTLFNDLSAREWARAEMKNQMIAMGKNFPGAGPLGPWIV FT TADEVPDPAQLELSLSVNGEPRQHGSCKEMIFTFAQLIAHWSRIGLGAGELIASGTPEG FT GAISRKPDPAPFFLKPGDIVEAHCPQIGTLRTRIV" FT misc_feature complement(23376..23867) FT /note="HMMPfam hit to PF01557, Fumarylacetoacetate (FAA) FT hydrolase family" FT CDS 24455..25144 FT /transl_table=11 FT /locus_tag="BP1671" FT /product="probable short chain dehydrogenase" FT /note="Similar to Escherichia coli 3-oxoacyl-[acyl-carrier FT protein] reductase FabG or B1093 SW:FABG_ECOLI (P25716) FT (244 aa) fasta scores: E(): 1.2e-07, 27.23% id in 246 aa, FT and to Streptomyces coelicolor putative FT dehydrogenase/reductase Scah10.14C TR:Q9RKU3 FT (EMBL:AL132824) (258 aa) fasta scores: E(): 9.6e-08, 31.14% FT id in 244 aa" FT /db_xref="GOA:Q7VXR7" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VXR7" FT /protein_id="CAE41958.1" FT /translation="MGRVACIAGSGTERGRAIAARLADEGWKVVQLDGPDGQDARAASP FT ALGIDLGAAADIATIAARLGVDYDEVGAYIHCACAPPAGVATEPSVALALQAWDAALAI FT HLEAPLLISQLLVRPMLAKGWGRVLFVGEHADNIPHGAQETAFACSMSGLIGLARSIAS FT ETGPHGVTANVILPGPLQPEPDPFGLGPRCTYETDGFAATVAFLLSDGARLVNGATIHA FT NGGQAMR" FT misc_feature 24461..25003 FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT misc_feature 25055..25120 FT /note="HMMPfam hit to PF00678," FT CDS 25209..25964 FT /transl_table=11 FT /gene="fabG" FT /locus_tag="BP1672" FT /product="3-oxoacyl-[acyl-carrier protein] reductase" FT /EC_number="1.1.1.100" FT /note="Similar to Escherichia coli 3-oxoacyl-[acyl-carrier FT protein] reductase FabG or B1093 SW:FABG_ECOLI (P25716) FT (244 aa) fasta scores: E(): 7.6e-21, 34.69% id in 245 aa, FT and to Agrobacterium tumefaciens Agr_l_2601p agr_l_2601 FT TR:AAK89866 (EMBL:AE008330) (246 aa) fasta scores: E(): FT 7.2e-29, 44.13% id in 247 aa" FT /db_xref="GOA:Q7VXR6" FT /db_xref="HSSP:1E7W" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VXR6" FT /protein_id="CAE41959.1" FT /translation="MQSVGTALVTGAAAGIGRAIAERLAQDGHDLVLLDVDAPGLEATK FT AVVAGHGRRADVHCIDLGDLQAVRRFAAAHEAAHISILVNNAAISPKRAGRRVTLSETD FT LEQDWLRVLQVNLTTPLVLAQMAAAGMQRARWGRIVNISSLAARCPSGLASLGYTTTKT FT GLLGLTRALAQELAADGITVNSIAPGRFATAMGENLEPEARQRIVAAIPVGRWGEPPEI FT AGLVSYLCGPQTGFITGAVLDINGGAVML" FT misc_feature 25221..25790 FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT misc_feature 25641..25727 FT /note="ScanRegExp hit to PS00061, Short-chain FT dehydrogenases/reductases family signature." FT misc_feature 25848..25940 FT /note="HMMPfam hit to PF00678," FT CDS 26016..27008 FT /transl_table=11 FT /locus_tag="BP1673" FT /product="putative exported protein" FT /note="Similar to Variovorax paradoxus 2,4-diphenoxyacetic FT acid gene cluster TR:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta FT scores: E(): 1.9e-39, 38.8% id in 317 aa, and to FT Pseudomonas chlororaphis hypothetical 35.8 kDa protein FT TR:Q9L3W5 (EMBL:AJ271325) (336 aa) fasta scores: E(): FT 2.9e-39, 37.85% id in 317 aa" FT /db_xref="GOA:Q7VXR5" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VXR5" FT /protein_id="CAE41960.1" FT /translation="MTRRIPRRLIAALASFSFLIPGAGSHAADLPESYPNRPIKLLYGF FT STGGPADYVTRLVGRRLAQELGQPVIVESKPGASSTIATNLVAQAPGDGYTIMMGAMNQ FT AVNPSLLPDLPFDQQKDLRAIAIAAFTPNVLVVSADSSIASVDEIVARARRAPGSISYG FT SSGVGTSVHLAGALFGTATGTELIHVPYKGIAPAKLDVVAGRVTMLFDSVVSAKKLIDA FT GRLKAFAVSSANRSALLPDVPTMAELGWQDFDVSPWYAFFAPASTPDAIVERLNAIIVA FT TMSDPQEQANLLAQGVEPRTSTAREADAYVAAEIGKWGELVKRLELKPE" FT misc_feature 26016..26096 FT /note="Signal peptide predicted for BP1673 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 27 and 28" FT CDS complement(27018..27971) FT /transl_table=11 FT /locus_tag="BP1674" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa2206 TR:Q9I1R1 (EMBL:AE004647) FT (315 aa) fasta scores: E(): 5.9e-19, 28.85% id in 305 aa, FT and to Burkholderia solanacearum probable transcriptional FT regulatory DNA-binding transcription regulator protein PcaQ FT TR:CAD15142 (EMBL:AL646064) (319 aa) fasta scores: E(): FT 2.1e-16, 34.82% id in 313 aa" FT /db_xref="GOA:Q7VXR4" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VXR4" FT /protein_id="CAE41961.1" FT /translation="MVQRSLAALSHLKFRHIALIQYLLQEGTLRKAARRLSISQPAATA FT MLSDIENLLGVQLFTRSRQGVAPTAQTLALAPRLRILMNDFDELGAMLDRLDTGEHEVL FT RVGVVPQAFTVLLPRAIEGFRQAGGCHLHTVEGSAQDLLARLLAGELDCVLGRLPPDVA FT KLGRDIASLTFVNLYEDDVCVVCGPDHPAARLKKPGYARLAQCDWVLQRISSSVRQALT FT EAFLRQGLLLPHPVVETPTYTQALDIVAATRLLTAAPRHTAMAHARSGRVKVLDIALGV FT APMQVCLILRKSAEAHPQIVRFRSVIEAMPMRFPGA" FT misc_feature complement(27507..27932) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(27798..27890) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT misc_feature complement(27828..27893) FT /note="Predicted helix-turn-helix motif with score 1335 FT (+3.73 SD) at aa 50-71, sequence GTLRKAARRLSISQPAATAMLS" FT CDS 28087..29049 FT /transl_table=11 FT /locus_tag="BP1675" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 4.8e-32, 34.47% id in 322 aa, and to Alcaligenes eutrophus FT hypothetical 35.7 kDa protein MacB TR:Q9RBG2 FT (EMBL:AF130250) (340 aa) fasta scores: E(): 3.3e-30, 35.87% FT id in 315 aa" FT /db_xref="GOA:Q7VXR3" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VXR3" FT /protein_id="CAE41962.1" FT /translation="MKTVLRILLLGAGLLGAAAASAEWPADQPIKIIVPQAAGGTNDTV FT ARLMGVELGKALGQTVVVENRPGASGAIGMQLASRSPADGYTLAIASDTASILSATRKM FT DWRLDHDMAGVAMVGDQPIGVAVSMRAPYASLDELLAAARKEPGTIAFGTSGLGTSQHI FT VGEWLTHLAGVQMIHVPYKGGGQAVTDLVSGTTPAAVLGFAPLLGQARSGGIRIVAVTT FT AERNPAMPEVPTLTELGYPQITRSQWVGVVAPRDTPPAIVKRLSDAMAAIGAQPAIQDK FT LREIGLTPKSMDAAQFDAFIHKDVADWGRLVTELNIKLD" FT misc_feature 28087..28152 FT /note="Signal peptide predicted for BP1675 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.850 between residues 22 and 23" FT CDS join(29064..29984,29981..30454) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1676" FT /product="probable sulfatase (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 307. The frameshift occurs within FT a dimeric tract of (CGGC)2. The sequence has been checked FT and believed to be correct. Similar to Homo sapiens FT arylsulfatase A precursor ArsA SW:ARSA_HUMAN (P15289) (507 FT aa) fasta scores: E(): 2.2e-36, 33.99% id in 453 aa, and to FT Rhizobium meliloti putative arylsulfatase protein FT TR:CAC49614 (EMBL:AL603646) (537 aa) fasta scores: E(): FT 1.8e-29, 30.27% id in 469 aa" FT /db_xref="PSEUDO:CAE41963.1" FT misc_feature join(29085..29984,29981..30268) FT /note="HMMPfam hit to PF00884, Sulfatase" FT variation 29977..29984 FT /note="(CGGC)2 in pertussis; (CGGC)3 in parapertussis an FT bronchiseptica" FT CDS 30451..30879 FT /pseudo FT /transl_table=11 FT /locus_tag="BP1677" FT /product="hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have an internal FT deletion relative to parapertussis and bronchiseptica, and FT it appears to be disrupted by the insertion of IS481 FT element." FT /db_xref="PSEUDO:CAE41964.1" FT variation 30745..30747 FT /note="There is ~100 bp deletion in pertussis and FT parapertussis and bronchiseptica" FT CDS complement(30876..31826) FT /transl_table=11 FT /locus_tag="BP1678" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q84CT8" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q84CT8" FT /protein_id="CAE41965.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT repeat_region 30876..30907 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(30876..31928) FT misc_feature complement(30912..31445) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(31503..31568) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region 31897..31928 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 31929..32123 FT /pseudo FT /transl_table=11 FT /locus_tag="BP1679" FT /product="Putative LysR-family transcriptional regulator FT (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to the C-terminal region of FT Burkholderia solanacearum conserved hypothetical protein FT Rsp1208 TR:CAD18359 (EMBL:AL646083) (449 aa) fasta scores: FT E(): 2.9, 35% id in 60 aa" FT CDS complement(32120..32842) FT /transl_table=11 FT /gene="arsH" FT /locus_tag="BP1680" FT /product="putative NADPH-dependent FMN reductase" FT /note="Similar to Thiobacillus ferrooxidans ArsH-like FT protein TR:Q9L9D0 (EMBL:AF173880) (240 aa) fasta scores: FT E(): 1.2e-60, 69.29% id in 228 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa2280 TR:Q9I1J5 FT (EMBL:AE004653) (230 aa) fasta scores: E(): 2e-61, 69.56% FT id in 230 aa" FT /db_xref="InterPro:IPR005025" FT /db_xref="UniProtKB/TrEMBL:Q7VXR2" FT /protein_id="CAE41967.1" FT /translation="MSEVLADLPNIDPSRFKQPSAAELFPPGRATHAPRFLLLYGSLRE FT RSYSRLVAEEAARLRRALGGETRLFNPSGLPLVDDASEDHPKVRELHELVRWAEGMIWS FT SPERHGAMSGLMKTQIDWIPLSMGAMRPTQGKTLAVMQVSGGSQSFNAVNQMRVLGRWM FT RMLTIPNQSSVAKAYQEFDEAGRMQPSPYYDRVVDVAEELMKFTLLTRDASPYLVDRYS FT ERKEAAETLSRRTAQARI" FT CDS complement(join(32835..33173,33177..33257)) FT /pseudo FT /transl_table=11 FT /gene="arsC" FT /locus_tag="BP1681" FT /product="arsenate reductase (Pseudogene)" FT /EC_number="1.20.4.1" FT /note="Pseudogene. This CDS contains an in-frame TAG stop FT codon. The sequence has been checked and believed to be FT correct. Similar to Escherichia coli arsenate reductase FT ArsC SW:ARC1_ECOLI (P08692) (141 aa) fasta scores: E(): FT 5.4e-33, 65% id in 140 aa, and to Serratia marcescens FT arsenate reductase ArsC TR:Q9L337 (EMBL:AJ288983) (141 aa) FT fasta scores: E(): 2.5e-33, 64.28% id in 140 aa. Also FT similar to BP1306, 56.140% identity (57.658% ungapped) in FT 114 aa overlap." FT /db_xref="PSEUDO:CAE41968.1" FT variation complement(33174..33176) FT /note="TAG stop in pertussis; GAG in parapertussis and FT bronchiseptica" FT CDS complement(33281..34468) FT /transl_table=11 FT /locus_tag="BP1682" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti putative transport FT protein Smb21575 TR:CAC49415 (EMBL:AL603645) (401 aa) fasta FT scores: E(): 1.2e-30, 35.16% id in 401 aa, and to FT Agrobacterium tumefaciens Agr_pat_464p TR:AAK90697 FT (EMBL:AE007901) (417 aa) fasta scores: E(): 9.9e-31, 36.17% FT id in 387 aa" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7VXR1" FT /protein_id="CAE41969.1" FT /translation="MPGAPVRVVGILGTAQTLAWASSYYLPAMLADPMARDLGVSTPTV FT YAAFSAALVASALIGPWTGLAIDRHGGRMVLAGTSLLFALGLGMLGAAQGLWTMVAAWL FT VMGVAMGAGLYEAAFSSLVRLYGHHARGAITGITLIAGFASTVGWPLSAWMETLFGWRG FT ACLGWAALHLMIGLPLNAWLPKAVAAETPSPDAPAAQEGTLPAARPGPQGLATALLAFV FT FAATWFISTAMATHLPRMLQATGATLAAAVAVGALIGPAQVAGRLLEFGLLRHVHPLLS FT ARLAALTHPAGVAVLLAAGPALAPLFAILHGAGNGILTIAKGTLPLALFGPRGYGARQG FT WLMMPARVAQALAPFLFGLALDAWRANALWLSGGIGLAACAALLVLRARPDPIKP" FT misc_feature complement(join(33311..33376,33461..33526,33548..33613, FT 33674..33739,33779..33829,34007..34072,34112..34177, FT 34190..34255,34271..34336,34382..34447)) FT /note="10 probable transmembrane helices predicted for FT BP1682 by TMHMM2.0 at aa 7-29, 44-66, 71-93, 97-119, FT 132-154, 213-230, 243-265, 285-307, 314-336 and 364-386" FT CDS complement(34472..34822) FT /transl_table=11 FT /locus_tag="BP1683" FT /product="putative transcriptional regulator" FT /note="Similar to Thiobacillus ferrooxidans ArsR-like FT protein TR:Q9L9D2 (EMBL:AF173880) (118 aa) fasta scores: FT E(): 1.3e-11, 45.09% id in 102 aa, and to Caulobacter FT crescentus transcriptional regulator, ArsR family Cc1505 FT TR:Q9A859 (EMBL:AE005825) (109 aa) fasta scores: E(): FT 2e-11, 42.2% id in 109 aa" FT /db_xref="GOA:Q7VXR0" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VXR0" FT /protein_id="CAE41970.1" FT /translation="MNAEQAVSSLGALAHAQRLSVFRALVVAGPAGLTPSVMADGLGIA FT RNALSFHLKELAHAGLVSVEQQGRNLIYRADFFRMNALLGYLTKHCCQGATCEVSDSRK FT NTAGCDAGARRA" FT misc_feature complement(34661..34726) FT /note="Predicted helix-turn-helix motif with score 1018 FT (+2.65 SD) at aa 33-54, sequence LTPSVMADGLGIARNALSFHLK" FT CDS join(35071..36474,36477..36554) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1684" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 468. The frameshift occurs within FT a dimeric tract of (G)6. It also contains a large deletion FT relative to parapertussis and bronchiseptica. The sequence FT has been checked and believed to be correct. Similar to FT Caulobacter crescentus hypothetical protein Cc3460 FT TR:Q9A2U6 (EMBL:AE006004) (581 aa) fasta scores: E(): FT 1.9e-89, 51.82% id in 494 aa" FT /db_xref="PSEUDO:CAE41971.1" FT variation 36470..36475 FT /note="(G)6 in pertussis; (G)4 in parapertussis and FT bronchiseptica. There is also a large deletion in FT pertussis, relative to parapertussis and bronchiseptica, FT downstream of this position" FT CDS 36572..37543 FT /transl_table=11 FT /locus_tag="BP1685" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: FT E(): 1.5e-43, 40.37% id in 322 aa, and to Comamonas FT testosteroni OrfJ protein TR:Q9RHM9 (EMBL:AB029044) (326 FT aa) fasta scores: E(): 5.1e-39, 39.37% id in 320 aa" FT /db_xref="GOA:Q7VXQ9" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VXQ9" FT /protein_id="CAE41972.1" FT /translation="MMKGICAAFAFAALAASWQGPAQAAFPDQPIKLVVPFAPGATIGP FT LAQLVSEQLSSDLGTPVYTEFKTGAGGNIGADIVAKSPGDGYTLLLGTISILTINPSLY FT PDLPFDPVKDFKPVSMLVTTQNILVVNPESKIQSVADLADYARQHPGQATFGSSGTGST FT MHLAGELFSTTAQVKMTHVPYRGGGPARSDLLGGRLTLMFSDLSAVPMVQAGKLRALAV FT TGSQRDGRIPDIPTMQESGMKGFDVEPWYGLVAPAGTPDAVIARLNASVRKVFDKQKVR FT DALQNIGLRPASDLSVAYMAGKIDSDLGKWAPIVKSVDMKTN" FT misc_feature 36572..36643 FT /note="Signal peptide predicted for BP1685 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.975 between residues 24 and 25" FT CDS 37557..38270 FT /transl_table=11 FT /locus_tag="BP1686" FT /product="probable short-chain dehydrogenase" FT /note="Similar to Pseudomonas abietaniphila DitG TR:Q9X4X1 FT (EMBL:AF119621) (244 aa) fasta scores: E(): 1.9e-35, 50.22% FT id in 227 aa, and to Rhizobium loti short-chain FT dehydrogenase/reductase family mlr5208 TR:Q98CC5 FT (EMBL:AP003006) (235 aa) fasta scores: E(): 7.2e-19, 37.11% FT id in 229 aa" FT /db_xref="GOA:Q7VXQ8" FT /db_xref="HSSP:1OOE" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VXQ8" FT /protein_id="CAE41973.1" FT /translation="MKTQATAGDGAAVVAIAGGMGALGRALAQRFKQRGDQVVVLDQAT FT DAAGLPQAGADLALLDVDLNDVASTRHAFDTIARRFGRLDALVSVAGGFHHETLAEGKV FT KAWDHMYALNLRTAVVACQAALPLMLARGAGHVVCIGSDAIGRAHAGLGAYAASKAGVA FT ELVRTLAAETRDQGIAANAVLPGTLDTPGNRRAMPDADFSRWVSLDAAAALILFLASPL FT AAQINGACIPIVNRC" FT misc_feature 37557..37640 FT /note="Signal peptide predicted for BP1686 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.625) with cleavage site FT probability 0.538 between residues 28 and 29" FT misc_feature 37590..38129 FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT misc_feature 37980..38066 FT /note="ScanRegExp hit to PS00061, Short-chain FT dehydrogenases/reductases family signature." FT misc_feature 38190..38255 FT /note="HMMPfam hit to PF00678," FT CDS complement(38275..39192) FT /transl_table=11 FT /locus_tag="BP1687" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Agrobacterium tumefaciens pca operon FT transcriptional activator PcaQ SW:PCAQ_AGRTU (P52668) (311 FT aa) fasta scores: E(): 9.2e-13, 27.55% id in 294 aa, and to FT Rhizobium meliloti putative transcriptional regulator FT protein Smb20123 TR:CAC48523 (EMBL:AL603642) (298 aa) fasta FT scores: E(): 1.4e-14, 29.43% id in 248 aa" FT /db_xref="GOA:Q7VXQ7" FT /db_xref="HSSP:1IXC" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VXQ7" FT /protein_id="CAE41974.1" FT /translation="MGPTDMRVSTRQLQAFLLVAEVRSFTRAAEALHVTQAGLSSMINE FT LETQVGIRLFERSNRATALTQAGTQFLPYARQAVESLNKGMLELSALNRRQQGGICVGV FT SPLIASTVLPAVMREFQQCTGRSCEVVDAELEVLHDMVETGRLDATYGTYMRRASRLKS FT EYIFGMALRLAGPGRLIPPGLEIAGVEDWARQHDIVLWALPDSNAVQQVVDRYLLEVGA FT HALRRQEVCHVATVASLISAGMGMGFVPTFLADFYDRDTVGQIALPQGAPAVDFYCTSD FT ASNPASSSIHVFSRLLAAHCSAAA" FT misc_feature complement(38740..39165) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(39031..39123) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT misc_feature complement(39061..39126) FT /note="Predicted helix-turn-helix motif with score 1525 FT (+4.38 SD) at aa 23-44, sequence RSFTRAAEALHVTQAGLSSMIN" FT CDS 39299..39595 FT /transl_table=11 FT /locus_tag="BP1688" FT /product="putative membrane protein" FT /note="Similar to Drosophila melanogaster Cg13065 protein FT TR:Q9VV13 (EMBL:AE003528) (140 aa) fasta scores: E(): 2.2, FT 39.53% id in 86 aa, and to Streptomyces coelicolor FT hypothetical 9.1 kDa protein Sch22a.29 TR:Q9L0V4 FT (EMBL:AL159178) (89 aa) fasta scores: E(): 8.7, 36.5% id in FT 63 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VXQ6" FT /protein_id="CAE41975.1" FT /translation="MSLYYRISFVLSVLALAAWAIAVTLYKAPRHGDGYGPDPLGVLLF FT LALWPVGLLLAHSGLLACLVRGQRPASILQGRYGVAIHLALGAGFLAYALYRV" FT misc_feature 39299..39358 FT /note="Signal peptide predicted for BP1688 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.643 between residues 20 and 21" FT misc_feature join(39317..39376,39413..39481,39518..39586) FT /note="3 probable transmembrane helices predicted for FT BP1688 by TMHMM2.0 at aa 7-26, 39-61 and 74-96" FT repeat_region 39592..39623 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 39592..40644 FT CDS 39694..40644 FT /transl_table=11 FT /locus_tag="BP1689" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA7" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA7" FT /protein_id="CAE41976.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHR" FT misc_feature 39952..40017 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 40075..40608 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(40613..40644) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(40635..41381) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1690" FT /product="putative exported protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. The C-terminal part of this CDS is FT BP2631. Similar to Rhizobium meliloti hypothetical protein FT Sma1927 TR:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: FT E(): 2.5e-44, 55.23% id in 239 aa, and to Agrobacterium FT tumefaciens Agr_l_312p TR:AAK88723 (EMBL:AE008213) (329 aa) FT fasta scores: E(): 2.4e-43, 53.13% id in 239 aa." FT /db_xref="PSEUDO:CAE41977.1" FT misc_feature complement(41301..41381) FT /note="Signal peptide predicted for BP1690 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.910 between residues 27 and 28" FT misc_feature complement(41325..41357) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 41803..44736 FT /transl_table=11 FT /gene="phaA" FT /locus_tag="BP1691" FT /product="putative pH adaptation potassium efflux protein" FT /note="Similar to Rhizobium meliloti PhaA protein TR:Q52978 FT (EMBL:X93358) (725 aa) fasta scores: E(): 1.4e-160, 62.5% FT id in 688 aa, and to Rhodobacter capsulatus NADH-quinone FT oxidoreductase chain 5 TR:O68034 (EMBL:AF010496) (961 aa) FT fasta scores: E(): 1.8e-159, 53.16% id in 963 aa" FT /db_xref="GOA:Q7VXQ5" FT /db_xref="InterPro:IPR003916" FT /db_xref="UniProtKB/TrEMBL:Q7VXQ5" FT /protein_id="CAE41978.1" FT /translation="MSLLLVLALPFLGSLCAALLPANARNAEAWLAGLIALACTLLVAS FT LYPQIAAGGVIRADLPWAPALGLQFTLRMDGYAWLFALIVSGMGALVVLYARYYMSPED FT PVPRFFSFFQAFMAAMLGVVMSGNLIQLVMFWEMTSLASFMLIAYWHHRLDARRGARMA FT LTVTGAGGLSLLAGVLMLGHIVGSYDMDQVLAAGDIVRADPWYPAVLVLIALGALTKSA FT QFPFQFWLPNAMAAPTPVSAYLHSATMVKAGVFLLARFWPMLAGTDEWFWIIGGAGLCS FT LVLGAYAAIFQQDMKGVLAYSTISHLGLITLMLGLNSSLGLVAAIFHMVNHATFKASLF FT MAAGIVDHETGTRDVGRLSGLYGAMPITATLAMVAAASMAGVPLLNGFISKEMFFAETT FT FVSGDVLVRWGLPLMATLAGAFSVTYSLRFILQVFFGPPAEDLPRAPHEPPRWMLLPSA FT LLVMVCLVVGVLPGVTLGPILHLAASSILGEHMPQYSLSVWHGFNLPLAMSFVALTAGV FT LLYLALRARQRAHPGLVPFIYRFDGRRTFEYLLDASSVAAAWLLRYLASSRMQVQMLVI FT VLGTLWVAWLPLRAGGWLAGQARLTPADPAFAILWVVGAACALGAAYQAKYHRLASLTL FT SGGAGLITCLTFVWFSAPDLALTQLAVEVVTVVLLLLGLRWLPRRIQTGGDEDRPDLRA FT RVRRLRDLGLAGVAGACMAALAYAVLTRPVGDTISSFFTERALPDGGGTNVVNVILVDF FT RGFDTLGEITVLGIVALTVYALLRRFRPAPESVELPHQQREQDGMPTVDETGERPAPDT FT KSPLPAGPMMIPAVLVRLLLPVAVLVSVYLLLRGHNLPGGGFVGGLVMATAIILQYMVG FT GVYWVESRSRLNPQHWVGLGLLAAGGAAVSAWLALRPFLSALAWDVALPVVGHVHLSSV FT LLFDLGVYMLVVGATVLVLVALAHQSLRAQRQAAVEAQAVAQTGSPA" FT misc_feature 41803..41874 FT /note="Signal peptide predicted for BP1691 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.409 between residues 24 and 25" FT misc_feature join(41806..41874,41902..41970,42031..42099,42142..42210, FT 42289..42357,42424..42492,42529..42597,42607..42675, FT 42712..42780,42901..42969,43177..43245,43303..43371, FT 43522..43590,43618..43671,43690..43758,43768..43836, FT 43897..43965,44077..44130,44275..44334,44362..44430, FT 44464..44532,44590..44658) FT /note="22 probable transmembrane helices predicted for FT BP1691 by TMHMM2.0 at aa 2-24, 34-56, 77-99, 114-136, FT 163-185, 208-230, 243-265, 269-291, 304-326, 367-389, FT 459-481, 501-523, 574-596, 606-623, 630-652, 656-678, FT 699-721, 759-776, 825-844, 854-876, 888-910 and 930-952" FT misc_feature 42004..42147 FT /note="HMMPfam hit to PF00662, NADH-Ubiquinone FT oxidoreductase (complex I), chain 5 N-terminus" FT misc_feature 42178..42981 FT /note="HMMPfam hit to PF00361, FT NADH-Ubiquinone/plastoquinone (complex I), various chains" FT CDS 44736..45080 FT /transl_table=11 FT /gene="phaC" FT /locus_tag="BP1692" FT /product="putative pH adaptation potassium efflux protein" FT /note="Similar to Rhizobium meliloti pH adaptation FT potassium efflux system C transmembrane protein PhaC FT TR:CAC47490 (EMBL:X93358) (115 aa) fasta scores: E(): FT 3e-27, 72.97% id in 111 aa, and to Rhodobacter capsulatus FT potential poly(3-hydroxyalkanoate) polymerase TR:O68035 FT (EMBL:AF010496) (114 aa) fasta scores: E(): 8.7e-31, 76.31% FT id in 114 aa" FT /db_xref="GOA:Q7VXQ4" FT /db_xref="InterPro:IPR001133" FT /db_xref="UniProtKB/TrEMBL:Q7VXQ4" FT /protein_id="CAE41979.1" FT /translation="MEVVYALAIGVLAGSGVWLLLRPRTFQVIMGLSLLSYAVNLFIFG FT MGRLTVGRPPVVSASAPVDAAAYADPLPQALVLTAIVIGFATTALFLVVLLASRGLTGT FT DHVDGREPES" FT misc_feature 44736..45071 FT /note="HMMPfam hit to PF01898, Protein of unknown function FT DUF67" FT misc_feature join(44745..44798,44817..44885,44958..45026) FT /note="3 probable transmembrane helices predicted for FT BP1692 by TMHMM2.0 at aa 4-21, 28-50 and 75-97" FT CDS 45077..46705 FT /transl_table=11 FT /gene="phaD" FT /locus_tag="BP1693" FT /product="putative pH adaptation potassium efflux protein" FT /note="Similar to Rhizobium meliloti PhaD protein TR:Q52981 FT (EMBL:X93358) (547 aa) fasta scores: E(): 6e-96, 52.33% id FT in 535 aa, and to Agrobacterium tumefaciens Agr_c_899p FT TR:AAK86324 (EMBL:AE007986) (548 aa) fasta scores: E(): FT 5.1e-94, 50.28% id in 533 aa" FT /db_xref="GOA:Q7VXQ3" FT /db_xref="InterPro:IPR001750" FT /db_xref="UniProtKB/TrEMBL:Q7VXQ3" FT /protein_id="CAE41980.1" FT /translation="MIDWLQHLPIYPITVPLIAGALMLLLPDTQRKTRAGIGLLSSLLQ FT LASAIALLSLAAGAGGIWPDGIGVYLPGDWPAPFGIVLVVDRLAAVMLALTAVLGLAAL FT IYSLARWDRAGVHFHSLYQFLLMGLNGAFLTGDLFNLFVFFEVLLAASYGLMLHGSGIA FT RVTAGLQYIAVNLVASFLLLISIALIYGVTGTLNLADLALRAGTLTGGERSLFEAGAAI FT LGVAFLVKAGAWPLNFWLVKGYGSAAAPVAALFSIMTKVGIYALLRIGSLLLPTGAPAA FT FSLDWMFAAGLATLVFGGLGLLANQQLEKLTGYCVIVSAGTLLTALGMPGVTLTGPALF FT YLISSVLATGALFMLVELIERTRSFGANVLAVTMDLFDLDDPSTPNRSDDVVGVAIPAA FT MAFLGLAFVSCALLVTGLPPLSGFVAKFSLLSAAVTAANTPSVALDAWVLVALVLLSGL FT AGLIALGRVGIRIFWSSDDRVTPRLRLMEAGPVAVLLLLCVVLAAGAGPVSAYLDAAAQ FT SLDRPASYVNAVLAKQPARALSEGL" FT misc_feature join(45086..45154,45191..45259,45335..45403,45416..45484, FT 45497..45565,45602..45670,45728..45796,45809..45877, FT 45920..45988,46007..46075,46085..46153,46253..46321, FT 46415..46483,46544..46612) FT /note="14 probable transmembrane helices predicted for FT BP1693 by TMHMM2.0 at aa 4-26, 39-61, 87-109, 114-136, FT 141-163, 176-198, 218-240, 245-267, 282-304, 311-333, FT 337-359, 393-415, 447-469 and 490-512" FT misc_feature 45479..45979 FT /note="HMMPfam hit to PF00361, FT NADH-Ubiquinone/plastoquinone (complex I), various chains" FT misc_feature 46274..46456 FT /note="HMMPfam hit to PF00361, FT NADH-Ubiquinone/plastoquinone (complex I), various chains" FT CDS 46702..47181 FT /transl_table=11 FT /gene="phaE" FT /locus_tag="BP1694" FT /product="putative pH adaptation potassium efflux protein" FT /note="Similar to Rhizobium meliloti PhaE protein TR:Q52982 FT (EMBL:X93358) (161 aa) fasta scores: E(): 1.9e-18, 39.26% FT id in 163 aa, and to Agrobacterium tumefaciens Agr_c_898p FT TR:AAK86323 (EMBL:AE007986) (162 aa) fasta scores: E(): FT 4.3e-21, 45.45% id in 154 aa" FT /db_xref="GOA:Q7VXQ2" FT /db_xref="InterPro:IPR002758" FT /db_xref="UniProtKB/TrEMBL:Q7VXQ2" FT /protein_id="CAE41981.1" FT /translation="MMRRYYLALLPLAMLALWLMLNQSASIGQLALGAALALWLGWASS FT RLRPLRGKPRSLWLLPGLAARVFADIVRSNVAVARLVWQRRPDFSPGFIAIPLDLHDPH FT GLAILACIVTYTPGTVWVDIIDGKLVLHVLDLQNEEAWIALVKQRYERTLIEVFE" FT misc_feature 46702..46776 FT /note="Signal peptide predicted for BP1694 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.427 between residues 25 and 26" FT misc_feature join(46714..46767,46777..46830) FT /note="2 probable transmembrane helices predicted for FT BP1694 by TMHMM2.0 at aa 5-22 and 26-43" FT CDS 47178..47462 FT /transl_table=11 FT /gene="phaF" FT /gene_synonym="phaF1" FT /locus_tag="BP1695" FT /product="pH adaptation potassium efflux system protein F" FT /note="Similar to Rhizobium meliloti pH adaptation FT potassium efflux system protein F PhaF or PhaF1 or R02914 FT or Smc03183 SW:PHAF_RHIME (Q52983) (92 aa) fasta scores: FT E(): 4.3e-16, 54.34% id in 92 aa, and to Agrobacterium FT tumefaciens Agr_c_896p TR:AAK86322 (EMBL:AE007986) (93 aa) FT fasta scores: E(): 7.8e-17, 52.68% id in 93 aa" FT /db_xref="GOA:Q7VXQ1" FT /db_xref="InterPro:IPR007208" FT /db_xref="UniProtKB/TrEMBL:Q7VXQ1" FT /protein_id="CAE41982.1" FT /translation="MMNIVLYWSASFALLCFALAMACAAIRLLRGPTAQDRVLALDSLY FT VSGMLTMLVFGIRAGTPVYFDIALLIALFGFVGSTAMAKFLLRGEVIEP" FT misc_feature 47178..47243 FT /note="Signal peptide predicted for BP1695 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.746 between residues 22 and 23" FT misc_feature join(47187..47255,47289..47357,47370..47438) FT /note="3 probable transmembrane helices predicted for FT BP1695 by TMHMM2.0 at aa 4-26, 38-60 and 65-87" FT CDS 47459..47785 FT /transl_table=11 FT /gene="phaG" FT /locus_tag="BP1696" FT /product="putative pH adaptation potassium efflux protein" FT /note="Similar to Rhizobium meliloti PhaG protein FT TR:CAC47494 (EMBL:X93358) (121 aa) fasta scores: E(): FT 6.7e-11, 44.89% id in 98 aa, and to Rhodobacter capsulatus FT hypothetical 12.6 kDa protein TR:O68039 (EMBL:AF010496) FT (116 aa) fasta scores: E(): 9.4e-14, 48.98% id in 98 aa" FT /db_xref="GOA:Q7VXQ0" FT /db_xref="InterPro:IPR005133" FT /db_xref="UniProtKB/TrEMBL:Q7VXQ0" FT /protein_id="CAE41983.1" FT /translation="MSDVDIPLWAGIPAAILLVLGGLLTLAGALGMLRFGHFYARIHAP FT TLGNTMGACSVLTASILVFSSLSMRPVVHEFVIGMLLVLTSPVTGMLLMRAAVYRARRA FT DDSA" FT misc_feature join(47486..47554,47591..47659,47687..47755) FT /note="3 probable transmembrane helices predicted for FT BP1696 by TMHMM2.0 at aa 10-32, 45-67 and 77-99" FT repeat_region 47839..47870 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 47839..48891 FT CDS 47941..48891 FT /transl_table=11 FT /locus_tag="BP1697" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q84CT8" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q84CT8" FT /protein_id="CAE41984.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT misc_feature 48199..48264 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 48322..48855 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(48860..48891) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 48968..49477 FT /transl_table=11 FT /locus_tag="BP1698" FT /product="putative exported protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VXP9" FT /protein_id="CAE41985.1" FT /translation="MSKIRIQRWCGALALGAGSLMAFGAHAAGTGSGQSQYQMDVQRCN FT SGDTSQDRATCLREAGAARQESQRNRLDDKQEGRYQDNAMMRCKNLPASQQQDCITQMT FT SGNTTTRGSVGGGGVLRETVIQVPAGTPGRPMPGSQMPSGQMPGAAPGGLQPPPAGTVA FT PPPVMR" FT misc_feature 48968..49048 FT /note="Signal peptide predicted for BP1698 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 27 and 28" FT CDS 49575..50423 FT /transl_table=11 FT /locus_tag="BP1699" FT /product="conserved hypothetical protein" FT /note="Similar to Borrelia burgdorferi hypothetical protein FT Bb0007 SW:Y007_BORBU (O51040) (285 aa) fasta scores: E(): FT 7.4e-16, 26.31% id in 285 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VXP8" FT /protein_id="CAE41986.1" FT /translation="MSDVIALVFDFDDTLASDSTTGFLESIGVDTASFWKDQVDPLLSQ FT QDWDPVPAYLYQMIQLSRQGSHGLITRERLREWGVRLALHDGVQTLFGRLRAAVRAEHP FT KVQLEFYLISSGIGDVVRATPIAHEFTEIWASEFVYGEDGGISFPRRIVSFTDKTRYLF FT HIQKGLIGREYRNKPFEVNRKVPEDRLRVPFDQMVFVGDGYTDIPCFSLIRSAGGFAFG FT VWDPKHRDKRSRAWGFIEEGRVSNLNQARYDEQAELYQWLEEAVTSLAGRIALKSRVYR FT G" FT CDS 50473..50922 FT /transl_table=11 FT /gene="cumB" FT /locus_tag="BP1700" FT /product="putative zinc-binding hydrolase" FT /note="Similar to Pseudomonas putida CumB TR:Q9X3V3 FT (EMBL:AF086638) (145 aa) fasta scores: E(): 5.4e-31, 59.31% FT id in 145 aa, and to Burkholderia solanacearum putative FT hydrolase protein rsc1451 TR:CAD15153 (EMBL:AL646064) (183 FT aa) fasta scores: E(): 6.3e-32, 63.69% id in 146 aa" FT /db_xref="GOA:Q7VXP7" FT /db_xref="HSSP:1P6O" FT /db_xref="InterPro:IPR002125" FT /db_xref="UniProtKB/TrEMBL:Q7VXP7" FT /protein_id="CAE41987.1" FT /translation="MALALEQAQEAARLGEVPVGAVVVDAQGEVLGTGYNRTIIDRDPT FT AHAEIVALRAAARRLDNYRLPGVSLYVTLEPCVMCIGAMLHARLARVVYGARDPKTGAC FT GSVLDVGAVGQLNHHTTITGGVLAEPCGELLRGFFRARRAKESPV" FT misc_feature 50506..50748 FT /note="HMMPfam hit to PF00383, Cytidine and deoxycytidylate FT deaminase zinc-binding region" FT misc_feature 50611..50724 FT /note="ScanRegExp hit to PS00903, Cytidine and FT deoxycytidylate deaminases zinc-binding region signature." FT CDS 50919..51920 FT /transl_table=11 FT /gene="ldcA" FT /locus_tag="BP1701" FT /product="muramoyltetrapeptide carboxypeptidase" FT /EC_number="3.4.17.13" FT /note="Similar to Escherichia coli muramoyltetrapeptide FT carboxypeptidase LdcA or B1192 SW:LDCA_ECOLI (P76008) (304 FT aa) fasta scores: E(): 2.6e-36, 40% id in 300 aa, and to FT Neisseria meningitidis hypothetical protein Nma1819 or MccF FT TR:Q9JR41 (EMBL:AL162757) (394 aa) fasta scores: E(): FT 9.9e-35, 41.28% id in 281 aa" FT /db_xref="GOA:Q7VXP6" FT /db_xref="InterPro:IPR003507" FT /db_xref="UniProtKB/TrEMBL:Q7VXP6" FT /protein_id="CAE41988.1" FT /translation="MTKKKNPPASHGHDHHEHHGHEPGHVCDAGCAHAPAQASGIYLVS FT PSSAVRDAAELELACQRLAAEGFQTKVDRAALAVHQRFAGTDKQRAAGLQRAIKQKHPI FT VMATRGGYGLIRLLPMIDWRAMADSGKRFVGMSDFTAFNLALLAQTGAVSYSGATAVRD FT FGLAKTDELTVALFGEIMRGELEILSFETRDADAFDGRGVLWGGNLATLVSLLGTPYMP FT KVRGGILFLEDVAEHPYRVERMLAQLWQAGVLERQKAIVLGSFSDYRLAAHDNGYDMHA FT VVGWLRKTVKVPVVTGLPYGHTDTKATLPIGKKVGLATERGMAHLVIDEHTH" FT misc_feature 51237..51461 FT /note="HMMPfam hit to PF02016, Uncharacterized protein FT family UPF0094" FT misc_feature 51519..51899 FT /note="HMMPfam hit to PF02016, Uncharacterized protein FT family UPF0094" FT CDS complement(51933..52727) FT /transl_table=11 FT /locus_tag="BP1702" FT /product="probable enoyl-CoA hydratase/isomerase" FT /note="Similar to Pseudomonas aeruginosa probable enoyl-CoA FT hydratase/isomerase Pa2013 TR:Q9I298 (EMBL:AE004627) (265 FT aa) fasta scores: E(): 2.1e-37, 41.06% id in 263 aa, and to FT Caulobacter crescentus enoyl-CoA hydratase/isomerase family FT protein Cc2169 TR:Q9A6C5 (EMBL:AE005888) (262 aa) fasta FT scores: E(): 3.4e-38, 44.22% id in 251 aa" FT /db_xref="GOA:Q7VXP5" FT /db_xref="HSSP:1HZD" FT /db_xref="InterPro:IPR001753" FT /db_xref="UniProtKB/TrEMBL:Q7VXP5" FT /protein_id="CAE41989.1" FT /translation="MLQTLEVAYGPQTAVVWLNRPDVRNALDPRMIAELTETFMALGAD FT NEVRAIVLAGRGKAFCAGADLNWMRRSAQAGDAENRADAQTLATMLHTIYTCPKPTIAR FT IHGPCMAGGMGLAAACDIAVASHEARFALTETRLGLIASMISPYVLRAMGARTASRWFL FT SAEVFEATEAWRIGLVHELCEADRLDGQINELLGSFMLTSPHAVAQAKRLIRDVAGAPI FT DAALLEETAARIAEQRASADGREGLASFLEKRQPAWVPRQDT" FT misc_feature complement(52176..52688) FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT CDS complement(52776..54677) FT /transl_table=11 FT /locus_tag="BP1703" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti putative transmembrane FT protein Smc04283 TR:CAC46625 (EMBL:AL591789) (579 aa) fasta FT scores: E(): 3.8e-49, 49.83% id in 610 aa" FT /db_xref="InterPro:IPR010656" FT /db_xref="UniProtKB/TrEMBL:Q7VXP4" FT /protein_id="CAE41990.1" FT /translation="MKIHKALWFGLSCIGLVLLMIAFLTPWDHLATGHIGLLMLALIVV FT AIMLGFPTAFTLMGMGVLFTFLAYFMQHEDGARAVRQTLDLMVQRTYATMTNDSLISVP FT LFVFMGYLVERANLIERLFRSMHLALARLPGALGVATLITCAIFATATGIVGAVVTLMG FT LLAMPAMLKAGYSVRLTAGSITAGGCLGILIPPSVMLIVYGATTGVSVVQLYAGAFFPG FT IMLAGLYVLYVMVVAKLRPDMAPPLSKEERHIPLQPGAEVLRQQGHRHAVPGLLAGLFK FT RRDPQVTGSFLARNLMLVVAPLAAFVLITGATYDTLTEPPVVYEIPDELRLGSGDSFDS FT GLAEPPSEDGGLAEPPGAAAAPETAAAQVEAAEAAEDAAAERLPAPYGFWIFFAVCVAL FT LAVFYALLNWSRLEVFRLLMSSFFPLALMIVAVLGSIVFGLATPSEAAAMGALGGALLA FT LAYRRLTMPVLRESVYLTAKTSAMVCWLFVGSSIFSAAFALLGGQGIVEQWVLSLGLTP FT IQFMLLAQIIIFLLGWPLEWTEIIVIFMPIFVPLLKAFGIDPLFFGLLVALNLQTAFLS FT PPVAMSAFYLKGVAPPHVTLNQIFLGMMPFMGIQLLAIFLLYMFPGIGLWLPTVLYR" FT misc_feature complement(join(52794..52859,52992..53057,53079..53144, FT 53160..53225,53286..53339,53370..53435,53457..53522, FT 53739..53804,53979..54044,54075..54140,54180..54278, FT 54339..54404,54468..54560,54606..54656)) FT /note="14 probable transmembrane helices predicted for FT BP1703 by TMHMM2.0 at aa 7-24, 39-70, 91-113, 133-166, FT 179-201, 211-233, 291-313, 385-407, 414-436, 446-464, FT 484-506, 511-533, 540-562 and 606-628" FT misc_feature complement(54606..54677) FT /note="Signal peptide predicted for BP1703 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.904) with cleavage site FT probability 0.407 between residues 24 and 25" FT CDS complement(54674..55297) FT /transl_table=11 FT /locus_tag="BP1704" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti hypothetical FT transmembrane protein Smc04287 TR:CAC46626 (EMBL:AL591789) FT (233 aa) fasta scores: E(): 5e-40, 52.63% id in 209 aa, and FT to Rhizobium loti Mll5171 protein TR:Q98CF5 (EMBL:AP003005) FT (194 aa) fasta scores: E(): 4.3e-14, 40.24% id in 164 aa" FT /db_xref="InterPro:IPR007387" FT /db_xref="UniProtKB/TrEMBL:Q7VXP3" FT /protein_id="CAE41991.1" FT /translation="MLRLIRLVDRLSTFVGQAFAWLIVVLTLHICWEVSARYILNTPSA FT WAFDLQLMYYGILFMMAGAYTLAKNGHVRGDILYGFLPPRVQAGLDLLLYILFFIPGVV FT AMVWAGWYYAGESIAIREHSSLMANGPPIYPFKAFIPIAGAFLLLQGLAEIARCLLCLR FT KGQWPSRAEDVEEVDVDKLKEMVHVKDEDIAELDQYVEKGEQTR" FT misc_feature complement(join(54818..54883,54956..55021,55085..55141, FT 55202..55258)) FT /note="4 probable transmembrane helices predicted for FT BP1704 by TMHMM2.0 at aa 13-32, 52-71, 92-114 and 138-160" FT CDS complement(55424..56548) FT /transl_table=11 FT /locus_tag="BP1705" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Smc04289 TR:CAC46627 (EMBL:AL591789) (339 aa) fasta scores: FT E(): 1.1e-92, 69.27% id in 332 aa, and to Rhizobium loti FT periplasmic mannitol-binding protein, SmoM Mlr5166 FT TR:Q98CF9 (EMBL:AP003005) (369 aa) fasta scores: E(): FT 3.4e-29, 30.98% id in 355 aa" FT /db_xref="GOA:Q7VXP2" FT /db_xref="InterPro:IPR018389" FT /db_xref="UniProtKB/TrEMBL:Q7VXP2" FT /protein_id="CAE41992.1" FT /translation="MQHVTQSRRKFISGAGAVAGTAVLGFPAVTRAQGSPVSMRFQSTW FT PANDIFHEFAQDYARKVNDMAEGQLKIEVLPAGAVVKAFDLLDAVSAGTLDGGHGVVAY FT WYGKNTAVALWGSGPSFGMDANMLLAWHEYGGGKELLTEIQKAMGVNVTSLMYGPMPTQ FT PFGWFKKPITKADDVKGAKFRTVGLAIDMYSAMGAAVNALPGGEIVPALDRGLLDGAEF FT NNASSDLALGFQDVSKICMLQSFHQSAEQFEILFNKNKYDALPKHLKHILAYAAQAASA FT DMSWKAADRYSKDYIKLQKDHNVKFYKTPDAILQQQLKIWDEMIAKRSAENPLFKKVLD FT SQRQFAERAGRWSNDTNVNFRMAFNHYFARKQPA" FT misc_feature complement(56453..56548) FT /note="Signal peptide predicted for BP1705 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.996) with cleavage site FT probability 0.768 between residues 32 and 33" FT CDS 56929..58533 FT /transl_table=11 FT /locus_tag="BP1706" FT /product="probable ATP-binding ABC transporter protein" FT /note="Similar to Ralstonia solanacearum probable FT ATP-binding ABC transporter protein Rsc1453 TR:CAD15155 FT (EMBL:AL646064) (540 aa) fasta scores: E(): 1.2e-125, 72.5% FT id in 542 aa, and to Escherichia coli hypothetical ABC FT transporter ATP-binding protein YbiT or B0820 or Z1042 or FT Ecs0897 SW:YBIT_ECOLI (P75790) (530 aa) fasta scores: E(): FT 5e-116, 67.41% id in 534 aa" FT /db_xref="GOA:Q7VXP1" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:Q7VXP1" FT /protein_id="CAE41993.1" FT /translation="MISTANLTIQFGPKPLFENVSVKFGEGNRYGLIGANGSGKSTFMK FT IIGGDLEPSAGNVSLEPGVRLGKLRQDQFAFEEVRVLDVVMMGHTEMWAAMSERDAIYA FT NPEATEDDYMRAADLEAKFAEYDGYTAEARAGELLLGLEIAVDQHNLLMREIAPGWKLR FT VLLAQALFSNPDVLLLDEPTNNLDINTIRWLENVLNGYQSTMIIISHDRHFLNQVCTHM FT ADVDYGEIRVYPGNYDDYMLASTQARERLTANNAKAKERIVELQDFVRRFAANKSKSRQ FT ATSRLKQIDRIKADQVEVKPSSRQNPYIRFEQNKVMHRLAVTIEKLSKSYDQPVIRDFS FT AMVDAGEKVAIIGANGVGKTTLLRMLATDLAPDSGTVKWSENADIGYMAQDVSDQFQQG FT DINLFDWMAEHRQPGDDDQSIRSALGRLLFSGDDLPKAPKVLSGGEKNRMTFGRLMLGR FT HNVMLLDEPTNHLDMESIESLQFALEKYEGALIFVSHDREFVSGLATRIIEILPDGELV FT DYRGGYEDYLASRGIEA" FT misc_feature 57007..57612 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 57028..57051 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 57964..58467 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 57985..58008 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 58249..58293 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature." FT CDS 58689..59465 FT /transl_table=11 FT /locus_tag="BP1707" FT /product="putative ABC-transport protein, ATP-binding FT component" FT /note="Similar to Streptomyces coelicolor putative FT ABC-transport protein, ATP-binding component Sc8g12.21 FT TR:Q9KYY4 (EMBL:AL355753) (270 aa) fasta scores: E(): FT 4.4e-32, 49.52% id in 212 aa, and to Pseudomonas aeruginosa FT probable ATP-binding component of ABC transporter Pa2294 FT TR:Q9I1I1 (EMBL:AE004655) (284 aa) fasta scores: E(): FT 2.7e-30, 45.65% id in 230 aa" FT /db_xref="GOA:Q7VXP0" FT /db_xref="HSSP:1G29" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VXP0" FT /protein_id="CAE41994.1" FT /translation="MNLTFDHVHKSFGSLNVVEGFSSEFKTGELVALVGPSGCGKSTLL FT HLAAGLEQASQGRVLADGKPVQGPHPSRTLVFQEHALYPWLTLRDNVALALEFQNAPKA FT QARQQAVHWLERVGLGGFDAYYPHQVSGGMRQRAALARAFIAQPQTLLMDEPFGALDAL FT TRLSLQDVLRQLIEQEKPSVVLVTHDVDEALFLADRIVVFSQRPARVLREFNLAHRAKS FT HDLSDLASEKREILRLLGIEVDSHGHGHGPKVALAA" FT misc_feature 58770..59306 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 58791..58814 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 59076..59120 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature." FT CDS 59550..60548 FT /transl_table=11 FT /locus_tag="BP1708" FT /product="putative exported protein" FT /note="Similar to Methanobacterium bryantii copper response FT extracellular protein TR:Q48929 (EMBL:U40213) (353 aa) FT fasta scores: E(): 1.3e-14, 29.32% id in 266 aa, and to FT Deinococcus radiodurans ABC transporter, periplasmic FT substrate-binding protein, putative dr1277 TR:Q9RUV4 FT (EMBL:AE001975) (325 aa) fasta scores: E(): 6.4e-14, 29.76% FT id in 299 aa" FT /db_xref="InterPro:IPR015168" FT /db_xref="UniProtKB/TrEMBL:Q7VXN9" FT /protein_id="CAE41995.1" FT /translation="MKLKQWLSLPLAAALLAAAPAMAAEKFRVGYLRVMDDAQAIVAQE FT GGYYKKAGLDSELIEFKSGTDLIKAIVGGQLDIGVLGFTNAVAWASKGADLKVVGGAQQ FT GYHSLLVRDDSDIKDIAGLKGKTLASQAEGSTADVVLKGVVLKEGKLGADDVNVMGGSP FT AVAVQSLVGKRVDAAFLFEPYDRIAQLVAPVKQIYEVGQAWPFPCMVVITSGDVLAKRK FT DDVWKALDAQKEAIDLLQNKPADASRLIASYFIAEPTLKTLTRGELPRETVISEAISTQ FT VFTPKLTDKDTNRLQEIADILQAQGSLKTRDGKPYDVSSIVDLSWQEARKL" FT misc_feature 59550..59618 FT /note="Signal peptide predicted for BP1708 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 23 and 24" FT CDS 60545..61318 FT /transl_table=11 FT /locus_tag="BP1709" FT /product="putative permease of ABC transporter" FT /note="Similar to Pseudomonas aeruginosa probable permease FT of ABC transporter Pa3448 TR:Q9HYF8 (EMBL:AE004765) (274 FT aa) fasta scores: E(): 2.7e-18, 35.4% id in 257 aa, and to FT Streptomyces coelicolor putative ABC-transport protein, FT membrane component sc8g12.20 TR:Q9KYY5 (EMBL:AL355753) (267 FT aa) fasta scores: E(): 4e-18, 29.96% id in 257 aa" FT /db_xref="GOA:Q7VXN8" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7VXN8" FT /protein_id="CAE41996.1" FT /translation="MSSSTRVTGARKHLAGVLGVLFILALWQAAAWVLPDFLMPGVPTV FT AQRLVEDLGQASFHQSLLGTLGRLGAGYGLALAAGIGFGLVAAVLFFFREVLRSAIVIL FT QSIPSIAWVPLFLIVMGFGNTPIIVVVALSAFFPAALSVMNATESVQRVHVSAARVMGA FT TRWGLIKRVYLPAVMPELITGAQLAFGNAWRALISAEMLIGFGKGLGRSLAYSGEIADM FT TGVMTNILVIAVLAALIDQFVLENLKHRLLRYQYV" FT misc_feature 60545..60637 FT /note="Signal peptide predicted for BP1709 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.960) with cleavage site FT probability 0.551 between residues 31 and 32" FT misc_feature join(60581..60649,60755..60823,60842..60910,60923..60982, FT 61043..61111,61208..61276) FT /note="6 probable transmembrane helices predicted for FT BP1709 by TMHMM2.0 at aa 13-35, 71-93, 100-122, 127-146, FT 167-189 and 222-244" FT misc_feature 60980..61216 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT CDS join(61355..62062,62064..62204) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1710" FT /product="putative substrate-binding protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 236. The frameshift occurs within FT a dimeric tract of (C)2. The sequence has been checked and FT believed to be correct. Similar to Escherichia coli FT cystine-binding periplasmic protein precursor FliY or B1920 FT SW:FLIY_ECOLI (P39174) (266 aa) fasta scores: E(): 0.44, FT 24.72% id in 275 aa, and to Pseudomonas glumae lipase FT chaperone lipB SW:LICH_PSEGL (Q05490) (353 aa) fasta FT scores: E(): 0.25, 32.44% id in 262 aa" FT /db_xref="PSEUDO:CAE41997.1" FT variation 62061..62062 FT /note="(C)2 in pertussis; (C)1 in parapertussis and FT bronchiseptica" FT repeat_region 62201..62232 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 62201..63253 FT CDS 62303..63253 FT /transl_table=11 FT /locus_tag="BP1711" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TT88" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TT88" FT /protein_id="CAE41998.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEATRAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 62561..62626 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 62684..63217 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(63222..63253) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 63291..63878 FT /transl_table=11 FT /locus_tag="BP1712" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Smc01701 TR:CAC41902 (EMBL:AL591783) (194 aa) fasta scores: FT E(): 1.3e-36, 54.01% id in 187 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa0168 TR:Q9I6W4 FT (EMBL:AE004454) (196 aa) fasta scores: E(): 4.1e-35, 52.66% FT id in 188 aa" FT /db_xref="HSSP:1VI7" FT /db_xref="InterPro:IPR001498" FT /db_xref="UniProtKB/TrEMBL:Q7VXN7" FT /protein_id="CAE41999.1" FT /translation="MMHTLAAACRHQEEIKKSRFAAYAAPVGTIAEAMAHFAAHSDPAA FT THNCWAYRIGNEYRFNDDGEPGGTAGRPILQAIDGQGLDRVAVLVVRWFGGIKLGAGGL FT VRAYGGCAANCLRAGERLPVIALATVRCRCGFAELPLLQARLAQAGASVRSETFDADGA FT QLEFDVSRAALEELARTFANITRGRGDWDVQA" FT misc_feature 63501..63590 FT /note="ScanRegExp hit to PS00910, Uncharacterized protein FT family UPF0029 signature. Confirmed by InterPro eMOTIF FT pattern match." FT CDS complement(63896..64279) FT /transl_table=11 FT /gene="trxC" FT /locus_tag="BP1713" FT /product="thioredoxin 2" FT /note="Similar to Escherichia coli thioredoxin 2 TrxC or FT B2582 or Z3867 or Ecs3448 SW:THI2_ECOLI (P33636) (139 aa) FT fasta scores: E(): 2.2e-13, 51.28% id in 78 aa, and to FT Streptomyces coelicolor thioredoxin TrxA2 TR:Q9RD25 FT (EMBL:AL133422) (134 aa) fasta scores: E(): 7.1e-23, 49.23% FT id in 130 aa. Also similar to BP1263, 39.000% identity in FT 100 aa overlap." FT /db_xref="GOA:Q7VXN6" FT /db_xref="HSSP:1KEB" FT /db_xref="InterPro:IPR013766" FT /db_xref="UniProtKB/TrEMBL:Q7VXN6" FT /protein_id="CAE42000.1" FT /translation="MSIVELTKDTFQDAITPDGTLIIDFWAPWCGPCRGFAPVFEQAAE FT QHPDVTFAKVNTDVEQELAGALGIRSIPTLMVFREKVLLFSQPGALSAGQLGELLTKVK FT EVDMAEVHRDIAQARENGEGEQA" FT misc_feature complement(64043..64276) FT /note="HMMPfam hit to PF00085, Thioredoxin" FT misc_feature complement(64160..64216) FT /note="ScanRegExp hit to PS00194, Thioredoxin family active FT site. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(join(64415..65005,65005..65433)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1714" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 143. The frameshift occurs within FT a dimeric tract of (GC)2. The sequence has been checked and FT believed to be correct. Similar to Bacillus subtilis FT hypothetical 37.1 kDa protein in ara-lacA intergenic region FT YvbT SW:YVBT_BACSU (O32254) (336 aa) fasta scores: E(): FT 6.3e-72, 59.69% id in 325 aa, and to Pseudomonas aeruginosa FT hypothetical protein Pa2483 TR:Q9I0Z9 (EMBL:AE004676) (333 FT aa) fasta scores: E(): 6.9e-70, 58.91% id in 331 aa" FT /db_xref="PSEUDO:CAE42001.1" FT variation complement(65005..65008) FT /note="(GC)2 in pertussis; (GC)3(G) in parapertussis and FT bronchiseptica" FT CDS complement(65639..66931) FT /transl_table=11 FT /locus_tag="BP1715" FT /product="permease" FT /note="Similar to Pseudomonas fluorescens OrfX protein FT TR:Q9RHS8 (EMBL:AB023289) (431 aa) fasta scores: E(): FT 4.7e-101, 64.33% id in 429 aa, and to Rhizobium meliloti FT putative integral membrane transporter protein, FT xanthineuracil permeases family smb21281 TR:CAC49185 FT (EMBL:AL603644) (457 aa) fasta scores: E(): 1.3e-125, FT 78.37% id in 430 aa" FT /db_xref="GOA:Q7VXN5" FT /db_xref="InterPro:IPR006043" FT /db_xref="UniProtKB/TrEMBL:Q7VXN5" FT /protein_id="CAE42002.1" FT /translation="MLEKLFQLRDHATTVRTEIVAGLTTFLTMSYIIFLNPDILSSTGM FT DRNAVFVATCLAAALGSLIMALVANWPIGMAPGMGLNAFFAFTVVKTMGYTWEQALGAV FT FISGVIFLFLTISGIRAWLIRGIPHSLRSAIAAGIGLFLAIIALSNANIVVAHPATKVT FT LGDLREPGPLFAILGFFIIAALDALRVRGAILIGILSVTVLSMLLGYNQFNGIFSSPPS FT LAPTFMQLDILGALHTGFVHVILVFVLVEVFDATGTLMGIAKRAGLVPEDRPNRLGRAL FT FADSTAIVAGSMLGTSSTTAYVESASGVQAGGRTGLTALVVALLFLAALFIAPLAGSVP FT AYATAPALLYVAGLMMRELIDIDWNDVSEATPAALTALVMPFTYSIANGLAFGFISYVV FT LKTCTGRIREVHPATWLVAILFIVRYAFFPE" FT misc_feature complement(join(65648..65698,65735..65800,65906..65971, FT 66173..66238,66284..66349,66371..66421,66467..66532, FT 66560..66625,66641..66697,66719..66784,66830..66895)) FT /note="11 probable transmembrane helices predicted for FT BP1715 by TMHMM2.0 at aa 12-34, 49-71, 78-97, 102-124, FT 133-155, 170-187, 194-216, 231-253, 320-342, 377-399 and FT 411-428" FT misc_feature complement(65756..66886) FT /note="HMMPfam hit to PF00860, Xanthine/uracil permeases FT family" FT CDS 67066..68106 FT /transl_table=11 FT /gene="gcp" FT /locus_tag="BP1716" FT /product="probable glycoprotease" FT /EC_number="3.4.24.57" FT /note="Similar to Escherichia coli probable FT O-sialoglycoprotein endopeptidase Gcp or B3064 SW:GCP_ECOLI FT (P05852) (337 aa) fasta scores: E(): 2.5e-68, 57.8% id in FT 346 aa, and to Ralstonia solanacearum probable FT O-sialoglycoprotein endopeptidase gcP TR:CAD15926 FT (EMBL:AL646068) (347 aa) fasta scores: E(): 2.1e-81, 65.69% FT id in 344 aa" FT /db_xref="GOA:Q7VXN4" FT /db_xref="InterPro:IPR017861" FT /db_xref="UniProtKB/Swiss-Prot:Q7VXN4" FT /protein_id="CAE42003.1" FT /translation="MIILGFESSCDETGVAAVCTERGLLAHALHTQIAMHQEYGGVVPE FT LASRDHIRRVVPLTRQVLAEAGLTLADVGAVAYTAGPGLAGALLVGASVAQALAWSRAL FT PAIGIHHLEGHLLSPLLAEPRPEFPFVALLVSGGHTQLMLVDGVGRYELLGETLDDAAG FT EAFDKSAKLMGLGYPGGPALARLAEQGDASRYDLPRPMLHSGDLDFSFSGLKTAVLTRV FT KAATRDGGELGEQDRADLAAATQAAIVEVLAAKAIRALKQTGLRRLVVAGGVGANALLR FT AHLARALKPLRAEAYFPPLSLCTDNGAMIAFAAAERVKAGLADLREGDHAFTVRPRWDL FT ADIQAG" FT misc_feature 67066..68022 FT /note="HMMPfam hit to PF00814, Glycoprotease family" FT repeat_region complement(68175..69405) FT /note="Insertion sequence" FT CDS complement(68204..69220) FT /transl_table=11 FT /locus_tag="BP1717" FT /product="transposase for IS1663" FT /note="Similar to Neisseria meningitidis putative FT invertase/transposase Nma1800 TR:Q9JTF3 (EMBL:AL162757) FT (318 aa) fasta scores: E(): 2e-17, 28.48% id in 316 aa and FT Acinetobacter spSE19. pilin inverting protein ChnY FT TR:Q9F7E1 (EMBL:AF282240) (324 aa) fasta scores: E(): FT 8.2e-50, 47.516% id in 322 aa" FT /db_xref="GOA:Q7TTM7" FT /db_xref="InterPro:IPR003346" FT /db_xref="UniProtKB/TrEMBL:Q7TTM7" FT /protein_id="CAE42004.1" FT /translation="MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKVVVN FT TAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQAATALPQVRVSLVNPAQARDFAKA FT LALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELNRKE FT KSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQ FT AGNAILAVMHNRHIDSAQSLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAA FT LVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLCFGVLKNRIPYQPNYAMNG" FT misc_feature complement(68336..68668) FT /note="HMMPfam hit to PF02371, Transposase FT IS116/IS110/IS902 family" FT misc_feature complement(68681..68968) FT /note="HMMPfam hit to PF01548, Transposase" FT CDS complement(69488..70135) FT /transl_table=11 FT /locus_tag="BP1718" FT /product="putative membrane protein" FT /note="Similar to Neisseria meningitidis putative integral FT membrane protein Nma1261 TR:Q9JUL4 (EMBL:AL162755) (200 aa) FT fasta scores: E(): 1.5e-32, 54% id in 200 aa, and to FT Caulobacter crescentus hypothetical protein Cc2446 FT TR:Q9A5K1 (EMBL:AE005913) (218 aa) fasta scores: E(): FT 9.4e-29, 50.7% id in 213 aa" FT /db_xref="GOA:Q7VXN3" FT /db_xref="InterPro:IPR003811" FT /db_xref="UniProtKB/Swiss-Prot:Q7VXN3" FT /protein_id="CAE42005.1" FT /translation="MPATMVLTAPSLLSSSALIVLAYLIGSIPFAVVVSKLMGLQDPRS FT YGSGNPGATNVLRTGNKTAAALTLLGDAAKGWFALWLARALVPELSWGAYALVALAVFL FT GHLYPLFLRFKGGKGVATALGVLMAIEPWLAVATIATWLIVAVFSRYSSLAALVAAFFA FT PVYYVFGSGAAWHARLEVGLAIAVISALLFYRHRANIARLLKGTESRIGKKK" FT misc_feature complement(69518..70081) FT /note="HMMPfam hit to PF02660, Domain of unknown function FT DUF" FT misc_feature complement(join(69548..69613,69626..69682,69704..69769, FT 69800..69865,69887..69943,70034..70099)) FT /note="6 probable transmembrane helices predicted for FT BP1718 by TMHMM2.0 at aa 12-34, 64-83, 90-112, 122-144, FT 151-170 and 174-196" FT misc_feature complement(70070..70135) FT /note="Signal peptide predicted for BP1718 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.978) with cleavage site FT probability 0.879 between residues 22 and 23" FT CDS 70261..71019 FT /transl_table=11 FT /gene="surE" FT /locus_tag="BP1719" FT /product="stationary-phase survival protein" FT /note="Similar to Escherichia coli stationary-phase FT survival protein SurE or B2744 or Z4052 or Ecs3598 FT SW:SURE_ECOLI (P36664) (253 aa) fasta scores: E(): 5.4e-43, FT 49.79% id in 245 aa, and to Ralstonia solanacearum probable FT stationary-phase survival protein SurE TR:CAD14906 FT (EMBL:AL646063) (251 aa) fasta scores: E(): 1.9e-61, 64.14% FT id in 251 aa" FT /db_xref="GOA:Q7VXN2" FT /db_xref="InterPro:IPR002828" FT /db_xref="UniProtKB/Swiss-Prot:Q7VXN2" FT /protein_id="CAE42006.1" FT /translation="MRILVSNDDGYNAPGLEALVEALSGLGELTVVAPETNHSGASNSL FT TLNRPLTVRTAANGFIYVNGTPSDCVHVALTGLMDARPDLVVSGINNGANMGDDTLYSG FT TVAAASEGYLFGIPSIAFSLIEKGWQHIESAARAARQVVERQIAQPLAAPVLLNVNIPN FT RRYEDMKGYAVTRLGKRHPSEPVVRTTTPYGDTVYWVGPVGLAADATPGTDFHATAQGQ FT VSVTPLRLDLTQHSQLDDVRNWAEPLCVNA" FT misc_feature 70261..70818 FT /note="HMMPfam hit to PF01975, Survival protein SurE" FT CDS 71145..71783 FT /transl_table=11 FT /gene="pcm" FT /locus_tag="BP1720" FT /product="protein-L-isoaspartate O-methyltransferase" FT /EC_number="2.1.1.77" FT /note="Similar to Escherichia coli protein-L-isoaspartate FT O-methyltransferase Pcm or B2743 or Z4051 or Ecs3597 FT SW:PIMT_ECOLI (P24206) (207 aa) fasta scores: E(): 2.6e-31, FT 51.7% id in 205 aa, and to Rhodocyclus gelatinosus Pcm FT protein TR:Q9JP91 (EMBL:AB034704) (270 aa) fasta scores: FT E(): 5.7e-33, 52.75% id in 218 aa" FT /db_xref="GOA:Q7VXN1" FT /db_xref="HSSP:1JG1" FT /db_xref="InterPro:IPR000682" FT /db_xref="UniProtKB/TrEMBL:Q7VXN1" FT /protein_id="CAE42007.1" FT /translation="MNSDRLRQAMVQRLRAQGIADERVLNAMAAVPRHLFVDEALASRA FT YEDAALPIGHSQTISQPWVVARMIAAVCEDRAPARVLEVGAGCGYQAAVLAQIVREVHA FT IERIRGLYELARGHLRALRLATRVRLIHGDGMLGVPGVAPFDAIVVAAAGLAIPQALLD FT QLAPGGRLIAPEGSTHQRLVLIERTGATAWSRKELEAVRFVPLRAGIQS" FT misc_feature 71160..71777 FT /note="HMMPfam hit to PF01135, FT Protein-L-isoaspartate(D-aspartate) O-methyltransferase FT (PCMT)" FT misc_feature 71541..71588 FT /note="ScanRegExp hit to PS01279, FT Protein-L-isoaspartate(D-aspartate) O-methyltransferase FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 71801..72685 FT /transl_table=11 FT /locus_tag="BP1721" FT /product="putative peptidase" FT /note="Similar to Escherichia coli lipoprotein NlpD FT precursor NlpD or B2742 SW:NLPD_ECOLI (P33648) (379 aa) FT fasta scores: E(): 2.2e-18, 39.39% id in 264 aa, and to FT Rhodocyclus gelatinosus NlpD protein nlpD TR:Q9JP90 FT (EMBL:AB034704) (314 aa) fasta scores: E(): 2.5e-29, 43.77% FT id in 297 aa" FT /db_xref="GOA:Q7VXN0" FT /db_xref="InterPro:IPR018392" FT /db_xref="UniProtKB/TrEMBL:Q7VXN0" FT /protein_id="CAE42008.1" FT /translation="MLNGQLQLTESQSVAGASAAAASRPVLWAGVLAIALLAGCASKGP FT RAPVVDLTGQPGASGPTDGSYVVKPGDTLYKIARANNVDIENLKRWNNLTDPNQISVGQ FT VLRLSSSGAGGAQTTPVTSSKPQPKPLDQGSAETPAGGMEAGAGGETGGATTPPAATVP FT DPKPARAADAAVINWGWPANGAILQTFNSNTKGIDLAGSLGDPVIAAADGKVMYSGNGV FT RGLGNLIIINHQNGFITAYAHNRALLVKTGQNVKRGAKIAEIGETDTTSPRLHFEIRRQ FT GTPVDPMQYLPPR" FT misc_feature 71996..72127 FT /note="HMMPfam hit to PF01476, LysM domain" FT misc_feature 72014..72079 FT /note="Predicted helix-turn-helix motif with score 1132 FT (+3.04 SD) at aa 79-100, sequence DTLYKIARANNVDIENLKRWNN" FT misc_feature 72422..72670 FT /note="HMMPfam hit to PF01551, Peptidase family M23/M37" FT CDS 72682..73461 FT /transl_table=11 FT /locus_tag="BP1722" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nma1628 TR:Q9JTU6 (EMBL:AL162756) (264 aa) fasta FT scores: E(): 6.4e-60, 55.89% id in 263 aa, and to FT Campylobacter jejuni hypothetical protein Cj1132C TR:Q9PNG2 FT (EMBL:AL139077) (264 aa) fasta scores: E(): 2.1e-26, 35.56% FT id in 239 aa" FT /db_xref="GOA:Q7VXM9" FT /db_xref="InterPro:IPR019288" FT /db_xref="UniProtKB/TrEMBL:Q7VXM9" FT /protein_id="CAE42009.1" FT /translation="MTPTLVFDLETIPDVAGLRRLNDWGGEVSDLEVVERAFAARREAV FT GHDFLPLHLHQVAVVGCVFRDDQGFRVKTLGQPDDPEAALLSGFFKTIERYTPRLVSWN FT GSGFDLPVLHYRSLIHGVPAPRYWDTGDEDRDFKFNNYISRYHNRHIDLMDLLAKYNGR FT ANAPLDELAKLCGFPGKLGMDGSKVWEAWNQGKADEVRAYCETDVVNTWLVYCRFRFLR FT GELDRVAYDAEVALVRDTLAASDAPHWKEYLAAWDAA" FT CDS 73566..74165 FT /transl_table=11 FT /locus_tag="BP1723" FT /product="putative exported protein" FT /note="Weakly similar to Epiphyas postvittana FT apolipophorin-iii-like protein TR:Q9GPN5 (EMBL:AF314181) FT (186 aa) fasta scores: E(): 5.3, 22.89% id in 166 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VXM8" FT /protein_id="CAE42010.1" FT /translation="MSRHAIRSTLAGLTLALSAGVVAAPALAATQEGPAAGHMKEQGRH FT HHKKMMRDGVWLPGVGPLSKAQIESLKLDAKQQGLVDQARQAQRDVHKSRRDAGATGRD FT ALKAQLDSGKLDPRALLAESDKRHEQFRAQATQVRDKWLAVWDSLNEAQRGQVTEIAKA FT NQARMSERHARMQERMQKRHAEGGQSAAPAGAATAN" FT misc_feature 73566..73649 FT /note="Signal peptide predicted for BP1723 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.981 between residues 28 and 29" FT CDS 74454..75206 FT /transl_table=11 FT /locus_tag="BP1724" FT /product="putative exported protein" FT /note="Similar to Ralstonia solanacearum probable signal FT peptide protein Rsc0341 TR:CAD13869 (EMBL:AL646058) (268 FT aa) fasta scores: E(): 3.5e-18, 37.9% id in 277 aa, and to FT Caulobacter crescentus hypothetical protein Cc2658 FT TR:Q9A513 (EMBL:AE005933) (230 aa) fasta scores: E(): FT 2.5e-11, 34.65% id in 202 aa" FT /db_xref="InterPro:IPR010239" FT /db_xref="UniProtKB/TrEMBL:Q7VXM7" FT /protein_id="CAE42011.1" FT /translation="MKKPLFALPLVLAVCAAAGARAEPTDLGAGFSLSGNAAMVSDYLF FT RGYSQTDFRPAIQLGFDLTHTSGLYLGNWNSNVSDFVFTDGNLEMDFYGGWKGEAGGGV FT GLDVGVLHYYYPGSSSPKGGNYNNTDLYLGVSYANYSLKYSYTPGDFFSTPDTKGTWYL FT DGTATFDLGDGWGLVGHLGYQKLKKAQDMDGDALGHYVDYKLGVTKDLSGWVLGLAAVG FT ATRDNWLPTKNGHPSGRLGAVLSVARTF" FT misc_feature 74454..74519 FT /note="Signal peptide predicted for BP1723 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.948 between residues 22 and 23" FT misc_feature 75322..75483 FT /note="HMMPfam hit to PF01938, TRAM domain" FT CDS 75325..76725 FT /transl_table=11 FT /locus_tag="BP1725" FT /product="conserved hypothetical protein" FT /note="Similar to Rhodocyclus gelatinosus YgcA protein FT TR:Q9JP88 (EMBL:AB034704) (473 aa) fasta scores: E(): FT 1.1e-106, 61.96% id in 447 aa, and to Ralstonia FT solanacearum probable RNA methyltransferase protein rsc1209 FT TR:CAD14911 (EMBL:AL646063) (450 aa) fasta scores: E(): FT 1.2e-104, 62.1% id in 446 aa" FT /db_xref="GOA:Q7VXM6" FT /db_xref="InterPro:IPR010280" FT /db_xref="UniProtKB/Swiss-Prot:Q7VXM6" FT /protein_id="CAE42012.1" FT /translation="MVDVLNIESLDLEARGIAHRDGKVLFVEGALPGERVTVQTVRRKP FT SYEIAKVEEVLRPSSQRVAPRCPHFGVCGGCAMQHLAPAAQVAIKQRALEDTFWHVGKL FT KPARILPPLYGPTWGYRYRARLSVRVVPKKGGVLVGFHERKSSYVADMRECHVLPPAVS FT RLLLPLRAMIAAMSAPDRMPQIEVALGDETIVLVLRHLLPLTDGDIAVLRAFAAEHGVQ FT WWLQSKGPDTVHPLEREHADALAYTLPEFGLRMPYRPTDFTQVNHAINRAMVSRALKLL FT DVQPQDRVADLFCGLGNFTLPLATQGREAVGVEGSKALTDRAHEAAARHGLGERTRFAT FT LNLFEVDVQWLRGLGYFDRMLIDPPREGAQAVAQALSLLAPGERPRRIVYVSCSPGTLA FT RDAAIMVHEGGYALRSAGVINMFPHTGHVESIAVFESLDEATVLQAQAQARQKAREEAE FT RLAEAAAA" FT CDS complement(76749..77147) FT /transl_table=11 FT /locus_tag="BP1726" FT /product="MerR-family transcriptional regulator" FT /note="Similar to Rhizobium meliloti heavy metal dependent FT transcription regulator HmrR SW:HMRR_RHIME (Q9X5X4) (147 FT aa) fasta scores: E(): 1.2e-35, 71.53% id in 130 aa, and to FT Agrobacterium tumefaciens strC58 Agr_c_1709p TR:AAK86743 FT (EMBL:AE008024) (140 aa) fasta scores: E(): 3.7e-29, 60.3% FT id in 131 aa. Also similar to BP3173, 58.333% identity in FT 84 aa overlap." FT /db_xref="GOA:Q7VXM5" FT /db_xref="HSSP:1Q06" FT /db_xref="InterPro:IPR015358" FT /db_xref="UniProtKB/TrEMBL:Q7VXM5" FT /protein_id="CAE42013.1" FT /translation="MNIGDAAQASGISAKMIRYYESIGLIGPAARTESGYRVYGDAELH FT TLRFVRRARDLGFSVEQMNELLALWRDRSRASADVKRIALEHVATLERKADELRQMADT FT LKHLAHHCHGDTRPDCPIIEELSNTGRR" FT misc_feature complement(77031..77138) FT /note="HMMPfam hit to PF00376, Bacterial regulatory FT proteins, merR family" FT misc_feature complement(77070..77138) FT /note="ScanRegExp hit to PS00552, Bacterial regulatory FT proteins, merR family signature." FT misc_feature complement(77082..77147) FT /note="Predicted helix-turn-helix motif with score 1364 FT (+3.83 SD) at aa 1-22, sequence MNIGDAAQASGISAKMIRYYES" FT CDS 77323..77523 FT /transl_table=11 FT /locus_tag="BP1727" FT /product="putative exported protein" FT /note="Similar to Pseudomonas syringae OrfH protein FT TR:Q9KWM7 (EMBL:AB033420) (65 aa) fasta scores: E(): FT 2.9e-05, 43.54% id in 62 aa, and to Agrobacterium FT tumefaciens strC58 Agr_c_2220p TR:AAK87005 (EMBL:AE008049) FT (84 aa) fasta scores: E(): 2.5e-07, 47.61% id in 63 aa" FT /db_xref="GOA:Q7VXM4" FT /db_xref="InterPro:IPR017969" FT /db_xref="UniProtKB/TrEMBL:Q7VXM4" FT /protein_id="CAE42014.1" FT /translation="MTIAFHVPDMTCGHCVKSITQAVQQAVPQALVQIDLAARRVTVEG FT AAAAEPVAQAIRAAGYAVQAA" FT misc_feature 77329..77517 FT /note="HMMPfam hit to PF00403, Heavy-metal-associated FT domain" FT misc_feature 77341..77430 FT /note="ScanRegExp hit to PS01047, Heavy-metal-associated FT domain." FT CDS 77662..78390 FT /transl_table=11 FT /locus_tag="BP1728" FT /product="putative glutaredoxin" FT /note="Similar to Vibrio cholerae peroxiredoxin family FT protein/glutaredoxin Vc2637 TR:Q9KNU3 (EMBL:AE004330) (247 FT aa) fasta scores: E(): 3.4e-61, 65.14% id in 241 aa, and to FT Neisseria meningitidis putative redoxin Nma1141 or Nmb0946 FT TR:Q9JQS4 (EMBL:AL162755) (245 aa) fasta scores: E(): FT 4e-59, 64.31% id in 241 aa" FT /db_xref="GOA:Q7VXM3" FT /db_xref="HSSP:1FOV" FT /db_xref="InterPro:IPR012335" FT /db_xref="UniProtKB/TrEMBL:Q7VXM3" FT /protein_id="CAE42015.1" FT /translation="MLQNREGQRVPSVTFPVRENNAWKQVTTDDVFKNKTVVVFSLPGA FT FTPTCSSTHLPRYNELAPTFFAAGVDSIVCVSVNDTFVMNERAKDQESANVTLLPDGNG FT EFTDGMGMLVDKKDLGFGKRSWRYAMLVKDGVVEKMFIEPEKEGDPFEVSDADTMLAYV FT APQARKPDQVVVFSKPGCPFCVDAKALLKGKGFDPIEIPLDNKVRGRVIGAVSGGDTAP FT QVFINGKLIGGFDALKAYLA" FT misc_feature 77677..78144 FT /note="HMMPfam hit to PF00578, AhpC/TSA family" FT misc_feature 78175..78345 FT /note="HMMPfam hit to PF00462, Glutaredoxin" FT misc_feature 78184..78234 FT /note="ScanRegExp hit to PS00195, Glutaredoxin active site. FT Confirmed by InterPro eMOTIF pattern match." FT CDS 78524..79939 FT /transl_table=11 FT /locus_tag="BP1729" FT /product="putative pyridine nucleotide-disulfide FT oxidoreductase" FT /note="Similar to Halobacterium volcanii dihydrolipoamide FT dehydrogenase Lpd SW:DLDH_HALVO (Q04829) (474 aa) fasta FT scores: E(): 1.4e-30, 32.27% id in 471 aa, and to Vibrio FT cholerae pyridine nucleotide-disulfide oxidoreductase, FT class I Vc2638 TR:Q9KNU2 (EMBL:AE004330) (484 aa) fasta FT scores: E(): 1e-102, 60.17% id in 467 aa" FT /db_xref="GOA:Q7VXM2" FT /db_xref="InterPro:IPR000815" FT /db_xref="UniProtKB/TrEMBL:Q7VXM2" FT /protein_id="CAE42016.1" FT /translation="MKTLHTDVAIIGAGTAGLAAHRAARAAGKRALLIEGGQYGTTCAR FT VGCMPSKLLIAAAEAAHAAAHGGPFGVHIDGAVRIDGAQVMARVKSERDRFVGFVLEGV FT ENIPAEDKLRGMARFVEDTVLRVDGHTEVRAGSVVIASGSRPAVPPPFLALGDRLVVND FT DVFAWDTLPARVAVFGPGVIGLELGQALARLGVQVRVFGVSGSLGGITDPRVRQSARKA FT FQQEFYLDPDARVLETKRVGDEVEVRYVALDNTERTERFDYALVATGRRPNVDGLDLHN FT TSLALDARGVPHFDRHTMQAGQAPVFIAGDANADAPLLHEAADEGRIAGENAARYPDVA FT PGLRRAALGVVFSDPQIALVGTPFARLESGTFVAGEVDFGDQGRSRVMLRNRGMLRVYA FT DIESGRFVGAEMVGPSAEHIGHLLAWAAQQSLTVAQMLEMPFYHPVVEEGLRTALRDAA FT ARLAQARPQRLAA" FT misc_feature 78524..78601 FT /note="Signal peptide predicted for BP1729 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.900) with cleavage site FT probability 0.633 between residues 26 and 27" FT misc_feature 78545..79393 FT /note="HMMPfam hit to PF00070, Pyridine FT nucleotide-disulphide oxidoreductase" FT CDS complement(79943..80806) FT /transl_table=11 FT /locus_tag="BP1730" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nmb1061 TR:Q9JZH0 (EMBL:AE002456) (281 aa) fasta FT scores: E(): 9.7e-50, 45.77% id in 284 aa, and to FT Escherichia coli O157:H7 hypothetical 32.0 kDa protein FT Ecs4371 TR:BAB37794 (EMBL:AP002565) (280 aa) fasta scores: FT E(): 1.4e-45, 42.8% id in 271 aa" FT /db_xref="InterPro:IPR007473" FT /db_xref="UniProtKB/TrEMBL:Q7VXM1" FT /protein_id="CAE42017.1" FT /translation="MFSYRHAFHAGNHADVLKHAILVHVLDYMNRKEAPYWVVDTHAGA FT GLYALGSDWASKNAEHADGVARLWELSGLPPLLADYVARIRDYNTDGVLRHYPGSPWLT FT LDVLRERDRLRLFEMHPSESDVLVRNLERRNERTALRQTTVFAADGFEGVKALLPPPTR FT RGLVLIDPSYEDKQDYRRTLTAVREGVKRFATGTFVVWYPLVQRREASEMARQLERLPV FT KSWLHATLTVRKPAADGFGLHGSGMFLVNPPWTLHDALKPAMPLLARELAQDDRAGFTL FT QYRENP" FT CDS complement(80819..81568) FT /transl_table=11 FT /gene="ugpQ" FT /locus_tag="BP1731" FT /product="glycerophosphoryl diester phosphodiesterase" FT /EC_number="3.1.4.46" FT /note="Similar to Escherichia coli glycerophosphoryl FT diester phosphodiesterase UgpQ or B3449 SW:UGPQ_ECOLI FT (P10908) (247 aa) fasta scores: E(): 4.5e-40, 47.73% id in FT 243 aa, and to Alcaligenes eutrophus Orf1 protein TR:Q44028 FT (EMBL:X91877) (248 aa) fasta scores: E(): 2e-53, 58.5% id FT in 241 aa" FT /db_xref="GOA:Q7VXM0" FT /db_xref="InterPro:IPR004129" FT /db_xref="UniProtKB/TrEMBL:Q7VXM0" FT /protein_id="CAE42018.1" FT /translation="MTAPLPAWPYSPYIAHRGGGRLAPENTLAAMRVGAAHGFTMFEFD FT VKLSRDNVEVLLHDDDVDRTSNGHGPAASKTYAELAQLDAGSWYAPQYAGEPVPTFSAV FT ARYALANGIACNVEIKPCPGREAETGAAVARAAAALWQDALPAPLLSSFAEPALHAARG FT AAPQLPRALLVDRVPADWLERLRKYDCIALNINQRDASRELVDAVHQAGYRIAAWTVND FT PARARLLLDWGMDAIFTDELATIRPAV" FT CDS 81811..83766 FT /transl_table=11 FT /gene="ppiD" FT /locus_tag="BP1732" FT /product="peptidyl-prolyl cis-trans isomerase D" FT /EC_number="5.2.1.8" FT /note="Similar to Escherichia coli peptidyl-prolyl FT cis-trans isomerase D PpiD or B0441 SW:PPID_ECOLI (P77241) FT (623 aa) fasta scores: E(): 2.9e-17, 26.07% id in 652 aa, FT and to Pseudomonas aeruginosa peptidyl-prolyl cis-trans FT isomerase D PpiD or Pa1805 TR:Q9I2T8 (EMBL:AE004606) (621 FT aa) fasta scores: E(): 6.5e-30, 31.49% id in 651 aa" FT /db_xref="GOA:Q7VXL9" FT /db_xref="HSSP:1EQ3" FT /db_xref="InterPro:IPR015391" FT /db_xref="UniProtKB/TrEMBL:Q7VXL9" FT /protein_id="CAE42019.1" FT /translation="MFEIIRTHRRWMQLILLLLIVPSFMLVGVQGYDSFINREPELATV FT AGQPVTRSEFDQAHRNQLEQLRQRLGSQFDPAMIDTPAMREQLLNQLIDQRLLAVVAAD FT NGFSVSDGTLRNTIAAIPQVQDNGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVL FT DPISQSASVPAEVARSVEAALTQRRTVQLRQFAASDFRAKVTVSPQDIQAWYDANQEQL FT RVPEQVQAQYLVLDEAAATEGVQVKDEDIASYYEQNKSRFGQPERRRVSHIMISIPPGA FT SEEARKAAAAKAQEIAAQAAADPAGFAELARKNSQDTGSAGQGGDLGWAPLPAPLQQAA FT QALAKDQVSGVVDTPTAFHILKVTDFQPGSVKPLAEVKDEVVGEIRKQLASARFADMAT FT DMTRLVYDQRDSLQPTADKLGLKLRTAGGITRTGLLPAEQAGAGSAAGGDDAQLLDNPR FT VRQVLFSPDVLREKLNSGVIELTPDTMLAVRVAAVEPSHIPPLEQVRASIEDRLFGERA FT AQAARQAGEAALKSVQADASATPEGFAPAIVVSRQDAQNLPRRVLDAVMRQAPSPLPAY FT TGVELGADYVVARIEKVEAGQSTEQDLDLLKTQLSGAWGQAEDAAVLRQLRDQYKVQIL FT PEAAEAIKGDAQSAAG" FT misc_feature 81811..81903 FT /note="Signal peptide predicted for BP1732 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.959) with cleavage site FT probability 0.562 between residues 31 and 32" FT misc_feature 82603..82905 FT /note="HMMPfam hit to PF00639, PPIC-type PPIASE domain." FT misc_feature 82729..82794 FT /note="ScanRegExp hit to PS01096, PpiC-type peptidyl-prolyl FT cis-trans isomerase signature. Confirmed by InterPro eMOTIF FT pattern match." FT CDS complement(83748..84356) FT /transl_table=11 FT /gene="tesA" FT /gene_synonym="apeA" FT /gene_synonym="pldC" FT /locus_tag="BP1733" FT /product="acyl-CoA thioesterase I precursor" FT /EC_number="3.1.2.-" FT /note="Similar to Escherichia coli acyl-CoA thioesterase I FT precursor TesA or ApeA or PldC or B0494 SW:TESA_ECOLI FT (P29679) (208 aa) fasta scores: E(): 9.7e-24, 42.07% id in FT 183 aa, and to Pseudomonas aeruginosa acyl-CoA thioesterase FT I precursor TesA or Pa2856 TR:Q9HZY8 (EMBL:AE004712) (201 FT aa) fasta scores: E(): 2.1e-36, 56.28% id in 183 aa" FT /db_xref="GOA:Q7VXL8" FT /db_xref="HSSP:1JRL" FT /db_xref="InterPro:IPR000169" FT /db_xref="UniProtKB/TrEMBL:Q7VXL8" FT /protein_id="CAE42020.1" FT /translation="MPAQAQTASAPTGSAPHAVLVVGDSLSAEYGLRRGSGWVPMLAQR FT VSQQSPNYRVVNASISGDTTSGGLARLPALLRQHAPAVVVLELGSNDALRGLALDMTER FT NLRAMAQASRQAGASVLVVGMQIPPNYGRDYTQRFAQVFPAVAEQEKARLVPFLMEGIA FT TNRAMFQADGIHPNENAQPALLDNVWPLLEPMLAQPAAD" FT misc_feature complement(84060..84305) FT /note="HMMPfam hit to PF00657, Lipase/Acylhydrolase with FT GDSL-like motif" FT misc_feature complement(84282..84314) FT /note="ScanRegExp hit to PS00639, Eukaryotic thiol FT (cysteine) proteases histidine active site." FT CDS 84415..85092 FT /pseudo FT /transl_table=11 FT /locus_tag="BP1734" FT /product="probable ATP-binding ABC transporter protein FT (Pseudogene)" FT /note="This CDS is possibly a pseudogene. This CDS appears FT to have a large deletion, relative to B. parapertussis and FT B. bronchiseptica, following codon 169. This deletion may FT have resulted from an insertion of IS481 downstream. FT Similar to Ralstonia solanacearum probable ATP-binding ABC FT transporter protein Rsc1718 TR:CAD15420 (EMBL:AL646066) FT (236 aa) fasta scores: E(): 2.1e-33, 70.06% id in 167 aa, FT and to Pseudomonas aeruginosa probable ATP-binding FT component of ABC transporter Pa2857 TR:Q9HZY7 FT (EMBL:AE004712) (227 aa) fasta scores: E(): 1.3e-29, 64.63% FT id in 164 aa" FT /db_xref="PSEUDO:CAE42021.1" FT misc_feature 84520..85074 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 84541..84564 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 84844..84888 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT variation 84919..84921 FT /note="There is a large deletion in pertussis, relative to FT parapertussis and bronchiseptica, following this codon" FT repeat_region 85089..85120 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 85089..86141 FT CDS 85191..86141 FT /transl_table=11 FT /locus_tag="BP1735" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE42022.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 85449..85514 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 85572..86105 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(86110..86141) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(86290..86628) FT /transl_table=11 FT /locus_tag="BP1736" FT /product="putative exported protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4739 TR:Q9HV60 (EMBL:AE004887) (114 aa) fasta FT scores: E(): 2.6e-06, 40.18% id in 107 aa, and to the FT N-terminal region of Escherichia coli osmotically inducible FT protein Y precursor OsmY or B4376 SW:OSMY_ECOLI (P27291) FT (201 aa) fasta scores: E(): 5.6e-06, 33.33% id in 120 aa" FT /db_xref="InterPro:IPR007055" FT /db_xref="UniProtKB/TrEMBL:Q7VXL7" FT /protein_id="CAE42023.1" FT /translation="MQVRKLFVATLIGATAAIGSLAHAAGEDKPKQSVGEYASDATVTT FT KVKAAFVADKSLSALDIAVETNNGVVTLTGTVGTATEADQAATVARDVEGVKQVMNNIK FT VDPAKAAK" FT misc_feature complement(86557..86628) FT /note="Signal peptide predicted for BP1736 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 24 and 25" FT CDS complement(86686..86847) FT /transl_table=11 FT /locus_tag="BP1737" FT /product="putative membrane protein" FT /note="Similar to Rhizobium loti Msr3702 protein TR:Q98FM7 FT (EMBL:AP003002) (54 aa) fasta scores: E(): 1.3e-08, 60.37% FT id in 53 aa, and to Pseudomonas aeruginosa hypothetical FT protein Pa5482 TR:Q9HT88 (EMBL:AE004961) (53 aa) fasta FT scores: E(): 4.5e-07, 63.46% id in 52 aa" FT /db_xref="GOA:Q7VXL6" FT /db_xref="InterPro:IPR009760" FT /db_xref="UniProtKB/Swiss-Prot:Q7VXL6" FT /protein_id="CAE42024.1" FT /translation="MLHYAVVFFVIAIIAAVLGFGGIAAGAAGIAKILFFVFLVLALLS FT ILGGVFRK" FT misc_feature complement(join(86695..86748,86761..86826)) FT /note="2 probable transmembrane helices predicted for FT BP1737 by TMHMM2.0 at aa 7-29 and 33-51" FT misc_feature complement(86770..86847) FT /note="Signal peptide predicted for BP1737 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.990) with cleavage site FT probability 0.435 between residues 26 and 27" FT CDS complement(86879..87079) FT /transl_table=11 FT /locus_tag="BP1738" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4738 TR:Q9HV61 (EMBL:AE004887) (65 aa) fasta FT scores: E(): 1.5e-13, 60.93% id in 64 aa, and to FT Escherichia coli protein YjbJ or B4045 or Z5644 or ecs5028 FT SW:YJBJ_ECOLI (P32691) (69 aa) fasta scores: E(): 2.7e-10, FT 52.3% id in 65 aa" FT /db_xref="HSSP:1RYK" FT /db_xref="InterPro:IPR008462" FT /db_xref="UniProtKB/Swiss-Prot:Q7VXL5" FT /protein_id="CAE42025.1" FT /translation="MNNDIVAGKWKQLTGKAKAAWGELTDDELTRTEGNAERLAGLIQE FT RYGKTKEQAQREVREFFDRNP" FT CDS complement(87345..89918) FT /transl_table=11 FT /gene="cphA" FT /locus_tag="BP1739" FT /product="cyanphycin synthetase" FT /note="Similar to Synechococcus elongatus cyanphycin FT synthetase CphA TR:Q9F2I7 (EMBL:AJ288949) (896 aa) fasta FT scores: E(): 5.9e-113, 41.6% id in 870 aa, and to FT Cyanothece cyanophycin synthetase CphA TR:Q9KGY4 FT (EMBL:AF279247) (872 aa) fasta scores: E(): 4.1e-110, FT 40.25% id in 872 aa. Also similar to the adjacent CDS, FT BP1740, 44.509% identity (46.921% ungapped) in 856 aa FT overlap." FT /db_xref="GOA:Q7VXL4" FT /db_xref="InterPro:IPR018109" FT /db_xref="UniProtKB/TrEMBL:Q7VXL4" FT /protein_id="CAE42026.1" FT /translation="MEVSRIRALRGPNLWSRNTAIEAIAACSDAECAINGMPDFEARLR FT ARFPQLGVLQPEGQRDAISMAHVLQATALGLQAHAGCPVTFGRTSPTIEPGVFQVVVEY FT SEEDVGRLAFELAEALIRSAQDDTPFDLPQALQRLRDLDEDTRLGPSTGSIVNAAVARS FT IPYHRLTQGSMVQFGWGSKQRRIQAAETDMTSAISESIAQDKDLTKMLLDAAGVPVPMG FT SSVDSAAAAWQAAQALGGSVVVKPRDGSQGRGVAVNIETRDRIESAFEAAAEISSEAIV FT ERYIPGHDFRLLVVGDTLVAAARRDPPQVTGDGTHTIAELVAQVNADPLRGDGHATSLT FT KIRFDDIAIATLRKQGYEADSVAAAGALVVLRNNANLSTGGAATDVTDEVHPELAARAV FT TAARMIGLDICGVDVVAETVHLPLEDQHGGVVEVNAAPGLRMHLNPSFGKGRAVGEAII FT SHMFAERDDGRIPVVAVAGTNGKTTTVRLTAHILDCAGHRVGMTNSDGVYVGKQRIDTG FT DCSGPRSARRLLLHPDVDAAVLETARGGVLREGLAFDRCNVAIVTNIGMGDHFGLGYIS FT TVEDLAVVKRVIVQYVQPDGMAVLNAADPMVAEMASACPGSITYFAEDRNHPVMATHRA FT QGHRVVYRDGDSLVAAQGGAEVAFALADIPLTRGGAIAFQVENTMAALAAAWALGIDWD FT TIRHALAIFVNDAQTAPGRFNVFDFRGATLIADYGHNPDAIQALVRAIDTMPARRRSVV FT ISGAGDRRDEDLRQQTEILGGAFDDVILYQDQCQRGRADGEVVALLRQGLQQAPRTRHI FT DEIQGEFVAIDAALERLAPGDLCLILVDQVEEALAHIASRVTGQP" FT misc_feature complement(87723..88505) FT /note="HMMPfam hit to PF01225, Mur ligase family, catalytic FT domain" FT misc_feature complement(88431..88502) FT /note="ScanRegExp hit to PS01011, Folylpolyglutamate FT synthase signature 1." FT CDS complement(89989..92562) FT /transl_table=11 FT /gene="cphA" FT /locus_tag="BP1740" FT /product="cyanophycin synthetase" FT /EC_number="6.-.-.-" FT /note="Similar to Cyanothece cyanophycin synthetase CphA FT TR:Q9KGY4 (EMBL:AF279247) (872 aa) fasta scores: E(): FT 1.9e-49, 37.54% id in 863 aa, and to Synechocystis sp FT cyanophycin synthetase CphA or Slr2002 SW:CPHA_SYNY3 FT (P73833) (873 aa) fasta scores: E(): 2.4e-49, 37.98% id in FT 874 aa. Also similar to the adjacent CDS, BP1739, 44.509% FT identity (46.921% ungapped) in 856 aa overlap." FT /db_xref="GOA:Q7VXL3" FT /db_xref="InterPro:IPR004101" FT /db_xref="UniProtKB/TrEMBL:Q7VXL3" FT /protein_id="CAE42027.1" FT /translation="MRNHSSITMKKKDIEFLDVVTLRGPNIWTYRPVLEAWVDIGELED FT FPSNTIPGFYERLSGWLPTLIEHRCSPGVRGGFLQRLREGTWPGHILEHVTLELQNLAG FT LPGGFGKARETSRRGVYKVVVRAWHEQVTRAALQEGRDLVMAAIEDRPFNVPAAVARLR FT ALVDSLCLGPSTACIVDAADDRDIPYIRLFEGNLVQFGYGSRQRRIWTAETDRTSAIAE FT GISRDKDLTKELLSTCGVPVPEGRLVQSAADAWEAAQDIGLPVVVKPYDGNHGRGVFTN FT LLTRDEIESAYAVAVDEGSGVIVERFITGNEHRLLVVGDRMVAAAAGEPAWVTGDGVST FT IEDLIGSQINTDPRRGRTENHPLNPVRLDSAARLEIARQGMTATSVPAAGRNVLIQRSG FT SVAFDVTDRVHPSVAATVALAARVVGLDVAGVDLVTDDISRPLDQTRGAIVEVNAGPGL FT LMHLKPADCPPRPVGRSIVDHLFPADDDGRIPIVGVTGTNGKTVVARLVARLVQKGDCA FT NWAAGRRVLMNRSVDAAVIENDSGVILGQGLAYDRCLVGVVTNIDDGDHLGDFDINETD FT RLVDVFRTQIDVVLPGGAAVLNARDPRVVRMAELCDGEVLYFGLDPALPTLAAHLAEGK FT RAVYLRAGRIVLARGRDEEALADIAAVPLTHGGRVAFQIENVLAAVAAAWALDIPVELI FT RAGIETFDIDQADAPWQFTLFERNGACVVVDDVHNPSALRALLAAIEQFPARRRAAVYS FT AGADRNDDALVEQGRLLGTTFDQVVLYDDATVASKRPAGQARSLLRQGLEQSARATAIA FT DEADHARAIARVLDDLREGDFALLQSDEAFSGPTIDLVRRWIQQG" FT misc_feature complement(90373..91092) FT /note="HMMPfam hit to PF01225, Mur ligase family, catalytic FT domain" FT misc_feature complement(91633..91884) FT /note="HMMPfam hit to PF00289, Carbamoyl-phosphate synthase FT L chain, N-terminal domain" FT CDS join(92953..93015,93019..93063,93065..95092) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1741" FT /product="putative ABC transporter (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a an in-frame FT TGA stop codon and a frameshift mutation following codon FT 36. The frameshift occurs within a polymeric tract of (G)3. FT The sequence has been checked and believed to be correct. FT Similar to Deinococcus radiodurans ABC transporter, FT ATP-binding protein Dra0349 TR:Q9RYG8 (EMBL:AE001863) (602 FT aa) fasta scores: E(): 1.2e-66, 38.66% id in 613 aa, and to FT Bacillus subtilis YknV protein TR:O31708 (EMBL:Z99111) (604 FT aa) fasta scores: E(): 5.6e-64, 36.19% id in 594 aa" FT /db_xref="PSEUDO:CAE42028.1" FT variation 93016..93018 FT /note="in-frame TGA stop codon in pertussis; TGG in FT parapertussis and bronchiseptica" FT variation 93061..93063 FT /note="(G)3 in pertussis; (G)2 in parapertussis and FT bronchiseptica" FT misc_feature join(93353..93421,93479..93547,93707..93775,93785..93853, FT 94037..94105,94133..94186) FT /note="6 probable transmembrane helices predicted for FT BP1742 by TMHMM2.0 at aa 12-34, 54-76, 130-152, 156-178, FT 240-262 and 272-289" FT misc_feature 93359..94192 FT /note="HMMPfam hit to PF00664, ABC transporter FT transmembrane region." FT misc_feature 94403..94957 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 94424..94447 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 94736..94780 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 95089..95577 FT /transl_table=11 FT /locus_tag="BP1743" FT /product="hypothetical protein" FT /note="no significant database matches" FT /db_xref="InterPro:IPR015005" FT /db_xref="UniProtKB/TrEMBL:Q7VXL2" FT /protein_id="CAE42029.1" FT /translation="MRAQPAMNDSAFQLHRNQAGRLVFTGADGRAHEGVVPVRAFPISA FT PASGLSLVSADGHELAWLDDVAQLPPAQRPLVEAELASREFMPEIRRIVSVSTFATPSS FT WQVETDRGNATFVLRGEEDIRRLAGHTLLITDMHGIFFLIRDALALDRHSRKLLDRFL" FT CDS complement(95669..96799) FT /transl_table=11 FT /locus_tag="BP1744" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3230 TR:Q9HZ10 (EMBL:AE004746) (374 aa) fasta FT scores: E(): 1e-64, 46.88% id in 369 aa, and to Ralstonia FT solanacearum conserved hypothetical protein TR:CAD16055 FT (EMBL:AL646069) (408 aa) fasta scores: E(): 1.8e-74, 51.44% FT id in 381 aa" FT /db_xref="InterPro:IPR007434" FT /db_xref="UniProtKB/TrEMBL:Q7VXL1" FT /protein_id="CAE42030.1" FT /translation="MPSSVELSVQAGLEHFDAAQWDALAGPQPFVRHAFLRALHDTGCA FT SPGTGWTPCFLALRRAGLLAGAVPLYAKSHSRGEYVFDYAWADAYARNGLPYYPKLLSA FT VPFTPVGGARLLAHTHADRLLLARGLIQLARQFEVSSLHVLFPSDDDLLALREAGYLIR FT AGVQFHWRNAGYAGFDDFLAAFSHDKRKKIRQDRKKVAAERVSFRWLRGADIDAAALDF FT FYQCYRHTYLAHGNPPYLNLEFFRQLHAEMPDALVLILAEQDGQPVAAALNLQADGVLY FT GRYWGARRYIPGLHFETCYLQSIEYCIAHGQASFEGGAQGEHKMARGLLPTPTWSAHWI FT ADTRFAAAIDDFLGHETHAIDEYRDELATHSPFRKT" FT CDS 96874..97695 FT /transl_table=11 FT /locus_tag="BP1745" FT /product="putative exported protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nmb0621 TR:Q9K0H9 (EMBL:AE002417) (275 aa) fasta FT scores: E(): 6.4e-40, 53.94% id in 241 aa, and to FT Pasteurella multocida hypothetical protein Pm0569 TR:Q9CN70 FT (EMBL:AE006092) (287 aa) fasta scores: E(): 7.4e-37, 52.83% FT id in 229 aa" FT /db_xref="InterPro:IPR011197" FT /db_xref="UniProtKB/TrEMBL:Q7VXL0" FT /protein_id="CAE42031.1" FT /translation="MEAASIAVPGAGAGASLRAQALDALMTPAWADKLAAVAAIDAGAP FT VGAQQDLAEPAGLPGRPPAPQLVPPSQVRQRSVQSPEGRAALLHALAHIEFNAINLALD FT AVWRYGGLPDAYYLDWLKVAREEAYHFDLLNRHLSGLGHAYGDFPAHNGLWEMAEKTRA FT DLLARLALVPRTLEARGLDASPLIRDKLAAAGDADGAAILEIILRDEIGHVAIGNHWYK FT ALCAQRGLDPVAQYAQLASRYGAPRLRGPFNLEARRAAGFDEDELRALLQA" FT misc_feature 96874..96936 FT /note="Signal peptide predicted for BP1745 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.947) with cleavage site FT probability 0.901 between residues 21 and 22" FT CDS 97734..98963 FT /transl_table=11 FT /locus_tag="BP1746" FT /product="putative peptidoglycan-binding protein" FT /note="Similar to Pseudomonas aeruginosa probable FT transglycolase Pa1171 TR:Q9I4G6 (EMBL:AE004547) (398 aa) FT fasta scores: E(): 2.8e-92, 62.46% id in 389 aa, and to FT Caulobacter crescentus peptidoglycan-binding protein, FT putative Cc3322 TR:Q9A382 (EMBL:AE005994) (433 aa) fasta FT scores: E(): 1.6e-49, 41.23% id in 388 aa" FT /db_xref="GOA:Q7VXK9" FT /db_xref="HSSP:1D0K" FT /db_xref="InterPro:IPR011970" FT /db_xref="UniProtKB/TrEMBL:Q7VXK9" FT /protein_id="CAE42032.1" FT /translation="MVHMNKAYLRLLCATAFAAAAIPALAAPAAATPADLDAYRACLKQ FT LRGDAIKSGVQAATYDAQTASLAPDMDVLGFLDVQPEFKTPIWDYMAGLVDEERIEDGR FT QALARHADVLARAQAEYGVDPATVVAVWGVESNFGKNLGGRPLLTSLSTLSCFGRRQSY FT FRGEFFATLKIIQDEHMQPERLAGSWAGAFGQTQFMPSTYLRLAVDFDGDGRRDLVDSV FT PDALGSTANFLRRAGWQTGQPWGFEVKLPAGMDLAGTGRRNKQPMSAWQARGIKRVDGG FT ALPAGDTPAALLAPAGAQGPVFLVLRNFDALYSYNAAESYALAIAHLSDRLRGDLPFAR FT AWPTDDPGLSRAERRELQELLLARGFDIGKPDGVIGVRTRQALQTVQGQLGLPADGRAG FT QKTLKALRTP" FT misc_feature 97734..97811 FT /note="Signal peptide predicted for BP1746 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.651 between residues 26 and 27" FT misc_feature 98781..98957 FT /note="HMMPfam hit to PF01471, Putative peptidoglycan FT binding domain" FT CDS 99092..99532 FT /transl_table=11 FT /locus_tag="BP1747" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3796 TR:Q9HXK1 (EMBL:AE004798) (195 aa) fasta FT scores: E(): 9.9e-12, 41.61% id in 149 aa, and to FT Escherichia coli hypothetical protein YidB or B3698 FT SW:YIDB_ECOLI (P09996) (132 aa) fasta scores: E(): 5.3e-05, FT 31.72% id in 145 aa" FT /db_xref="InterPro:IPR009282" FT /db_xref="UniProtKB/TrEMBL:Q7VXK8" FT /protein_id="CAE42033.1" FT /translation="MGLLDSLTSIAGGALGGGDERSANGGMAALLPVLVAQLNNYPGGL FT TALIQRFQEGGLGEVIASWVSAGPNQPVTPAQLDSVLEPGMVDQMAQQSGQDRGDVLAN FT LSRLLPGLVDTATPGGQAESGQSFDAGSLLASLSGLLDGKRG" FT repeat_region 99541..99572 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 99541..100593 FT CDS 99643..100593 FT /transl_table=11 FT /locus_tag="BP1748" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTC0" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTC0" FT /protein_id="CAE42034.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN" FT misc_feature 99901..99966 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 100024..100557 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(100562..100593) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(100590..101063) FT /transl_table=11 FT /locus_tag="BP1749" FT /product="putative AsnC-family transcriptional regulator" FT /note="Similar to Rhizobium loti transcriptional regulator FT Mll7935 TR:Q984M5 (EMBL:AP003013) (159 aa) fasta scores: FT E(): 1.9e-15, 36.42% id in 151 aa, and to Agrobacterium FT tumefaciens StrC58 Agr_c_1339p TR:AAK86548 (EMBL:AE008008) FT (150 aa) fasta scores: E(): 8e-23, 45.27% id in 148 aa" FT /db_xref="GOA:Q7VXK7" FT /db_xref="InterPro:IPR019888" FT /db_xref="UniProtKB/TrEMBL:Q7VXK7" FT /protein_id="CAE42035.1" FT /translation="MQLDAIDHRIIGILQRDADISNAVLAERVGLSASACLRRVARLKE FT NGVIRRIVAVLDPARVERPLSAIVTLEFARHGSEYRRTFMEQVALEPAVTQCYMVTGEV FT SCVLIVHMRDMDEYLAFADRLFDQDDNVQAFYTHIVMQTVKDEPVVAVPAAPR" FT misc_feature complement(100674..100985) FT /note="HMMPfam hit to PF01037, AsnC family" FT misc_feature complement(100941..101006) FT /note="Predicted helix-turn-helix motif with score 1034 FT (+2.71 SD) at aa 20-41, sequence ISNAVLAERVGLSASACLRRVA" FT CDS 101204..102163 FT /transl_table=11 FT /locus_tag="BP1750" FT /product="putative membrane protein" FT /note="Similar to Agrobacterium tumefaciens strC58 FT Agr_c_1338p TR:AAK86547 (EMBL:AE008008) (320 aa) fasta FT scores: E(): 1.6e-32, 33.44% id in 296 aa, and to Bacillus FT halodurans Bh3588 protein TR:Q9K6Y6 (EMBL:AP001519) (317 FT aa) fasta scores: E(): 1.1e-14, 26.35% id in 296 aa" FT /db_xref="GOA:Q7VXK6" FT /db_xref="InterPro:IPR011642" FT /db_xref="UniProtKB/TrEMBL:Q7VXK6" FT /protein_id="CAE42036.1" FT /translation="MPYLSGLMRRSGRLFLTLVKVMLPVMIAVQAAQAWGWIDILGQAF FT APAMGLLNLPAEAGMVWMTGAFVGIYGAIAALISLAPALELTGGQFSALCSMLLFAHAL FT PVEQAIVRRAGASFWATAALRVGAALGYGAAVSWFCHATGWLDEPVSLQWLQSTALAGE FT QAGGIWAWVRGTAVSLSFTYLIILALLVALDVMERTGITRAITVALTPVLRVSGLDPRV FT TPVTILGVLLGLSYGGALIIEEAEKQQLEARPRFLALAWLSLSHSLIEDTVLLMALGAN FT GWIVLVGRLLVTLVVVAILARMLGGGGAARRPLGAPAG" FT misc_feature 101204..101296 FT /note="Signal peptide predicted for BP1750 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.808) with cleavage site FT probability 0.570 between residues 31 and 32" FT misc_feature join(101237..101305,101378..101446,101570..101638, FT 101714..101782,102050..102118) FT /note="5 probable transmembrane helices predicted for FT BP1750 by TMHMM2.0 at aa 12-34, 59-81, 123-145, 171-193 and FT 283-305" FT CDS complement(102165..103373) FT /transl_table=11 FT /gene="dfp" FT /locus_tag="BP1751" FT /product="DNA/pantothenate metabolism flavoprotein" FT /note="Similar to Escherichia coli DNA/pantothenate FT metabolism flavoprotein Dfp or B3639 SW:DFP_ECOLI (P24285) FT (406 aa) fasta scores: E(): 1.7e-56, 43.95% id in 405 aa, FT and to Neisseria meningitidis DNA/pantothenate metabolism FT flavoprotein Nmb1658 TR:Q9JYB7 (EMBL:AE002516) (394 aa) FT fasta scores: E(): 3.2e-65, 48.72% id in 392 aa" FT /db_xref="GOA:Q7VXK5" FT /db_xref="HSSP:1E20" FT /db_xref="InterPro:IPR005252" FT /db_xref="UniProtKB/TrEMBL:Q7VXK5" FT /protein_id="CAE42037.1" FT /translation="MLDLARKRIVLGLTGGIACYKIAELVRRMTEQGAVVDVVMTEAAT FT HFITPVTMQALSGRPVFVDAWDARVDNNMAHIDLTRGADAVLIAPASADFMAKLAHGLA FT DDLLSTLCLARACPLLVAPAMNREMWANPATQRNAAQLRADGITVLGPAAGEQACGETG FT TGRMLEAHELLADLIASFQPKVLADRHMLLTAGPTSEPVDPVRVLSNRSSGKTGYALAR FT AAHEAGARVTLITGATALAIPRGVTALHVTTARQMHDAVMANANDADIFVAVAAVADWR FT VKNVSEQKLKKTTEGGGAPALEFEPNPDILAEVAKLASGPWCVGFAAETEKLAEHAEAK FT RLRKGIPLLVGNLAHKVMDADTTELVLFDEHGVHPLPAAAKLDAARRLIAEIAARLPAP FT ARP" FT misc_feature complement(103002..103355) FT /note="HMMPfam hit to PF02441, Flavoprotein" FT misc_feature complement(103317..103349) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(103478..103984) FT /transl_table=11 FT /gene="lspA" FT /locus_tag="BP1752" FT /product="lipoprotein signal peptidase" FT /EC_number="3.4.23.36" FT /note="Similar to Escherichia coli lipoprotein signal FT peptidase LspA or B0027 SW:LSPA_ECOLI (P00804) (164 aa) FT fasta scores: E(): 5.5e-22, 41.17% id in 153 aa, and to FT Pseudomonas aeruginosa lipoprotein signal peptidase LspA or FT Ls or Pa4559 TR:Q9HVM5 (EMBL:AE004869) (169 aa) fasta FT scores: E(): 3.8e-28, 49.36% id in 158 aa" FT /db_xref="GOA:Q7VXK4" FT /db_xref="InterPro:IPR001872" FT /db_xref="UniProtKB/TrEMBL:Q7VXK4" FT /protein_id="CAE42038.1" FT /translation="MTQARAAAPRLAPWLAAAALIIVLDQATKLYFDGAFQYGERLNVL FT PFFDFTLLYNRGAVFSFLASEEGWQRWFFTALGVGASIVIVWLLRRTAGQPRFSLALTL FT IMGGALGNVIDRVAYGHVVDFLLFYWRDWHYPAFNLADVAITCGAVLLVVDELLRARKR FT PTAQD" FT misc_feature complement(103490..103951) FT /note="HMMPfam hit to PF01252, Signal peptidase (SPase) II" FT misc_feature complement(join(103523..103579,103625..103690, FT 103718..103768,103913..103963)) FT /note="4 probable transmembrane helices predicted for FT BP1752 by TMHMM2.0 at aa 7-24, 72-89, 98-120 and 135-154" FT misc_feature complement(103634..103672) FT /note="ScanRegExp hit to PS00855, Signal peptidases II FT signature." FT CDS complement(103987..106848) FT /transl_table=11 FT /gene="ileS" FT /gene_synonym="ilvS" FT /locus_tag="BP1753" FT /product="isoleucyl-tRNA synthetase" FT /EC_number="6.1.1.5" FT /note="Similar to Escherichia coli isoleucyl-tRNA FT synthetase IleS or IlvS or B0026 SW:SYI_ECOLI (P00956) (937 FT aa) fasta scores: E(): 1.3e-99, 51.64% id in 972 aa, and to FT Aquifex aeolicus isoleucyl-tRNA synthetase IleS or Aq_305 FT SW:SYI_AQUAE (O66651) (956 aa) fasta scores: E(): 2.3e-130, FT 40.53% id in 982 aa" FT /db_xref="GOA:Q7VXK3" FT /db_xref="HSSP:1FFY" FT /db_xref="InterPro:IPR013155" FT /db_xref="UniProtKB/Swiss-Prot:Q7VXK3" FT /protein_id="CAE42039.1" FT /translation="MDYKKSLNLPDTPFPMRGDLAKREPGWVAEWEETQVYQAIRAASR FT GRPRFVLHDGPPYANGDIHIGHAVNKILKDIIVKSRNMAGYDAHYVPGWDCHGMPIEIQ FT IEKKYGKHLPVTEVQSKARAYALEQIDRQRKDFKRLGVLGDWHNPYLTMNFSNEADEIR FT VLGRILEKGYVFRGLKPVNWCFDCGSALAEAEVEYADRVDPAIDVAFPFTDRGALARAF FT GLDEVDAGAIVIWTTTPWTIPSNQALNVHPEIDYALVRVTPAPVHGPLLLLAQERVEPS FT LKAWGLEGEIIATAKGEALEGLRFRHPLAAAAQGYDRTSPIYLGDYVTLDTGTGVVHSA FT PAYGIEDFVSCKAHGLADSDILGPVMGDGKFVDSLPLFGGLSIWDANPRIVEALKLADS FT LMLVQKLSHSYMHCWRHKTPVIYRATSQWFAGMDVKPRDGGPSLRESALAGIDATAFYP FT AWGRARLHAMIANRPDWTLSRQRQWGVPMAFFVHKETGELHPRTVELLEQIAQRVEKGG FT IEAWQSLDPRELLGDEAELYEKNRDTLDVWFDSGSTHATVLGGKDGVLGGSHGAELAWP FT ADLYLEGSDQHRGWFHSSLLTGCMLYGHPPYKGLLTHGFVVDGQGRKMSKSVGNVIAPQ FT KVSDSLGAEILRLWVASTDYSGELSISDEILKRVVESYRRIRNTLRFLLANVADFDAVG FT QAVPYGELFEIDRYALAMTAQMQAEVQGHYERYDFHPAVSRLQTFCSEDLGAFYLDILK FT DRLYTTAAGSAARRSAQTALLDITQTLLKLMAPILSFTAEEAWKILAGSALAKQADAPR FT VTIFTEVYHALPPFADGEALTAKWTRLRAIRAEVQRKLEEVRSAGAIGSSLQAEVDLYA FT NAADHDILASLGDDLRFVLIVSRATVHADADDLRIEIAASGHKKCERCWHWRPDVGQDA FT DHPEICGRCVSNLFGAGEPRTRA" FT misc_feature complement(104686..106773) FT /note="HMMPfam hit to PF00133, tRNA synthetases class I (I, FT L, M and V)" FT misc_feature complement(106645..106680) FT /note="ScanRegExp hit to PS00178, Aminoacyl-transfer RNA FT synthetases class-I signature. Confirmed by InterPro eMOTIF FT pattern match." FT CDS complement(106838..107803) FT /transl_table=11 FT /gene="ribF" FT /locus_tag="BP1754" FT /product="riboflavin biosynthesis protein" FT /EC_number="2.7.1.26" FT /note="Similar to Escherichia coli riboflavin biosynthesis FT protein RibF or B0025 or Z0029 or Ecs0028 SW:RIBF_ECOLI FT (P08391) (313 aa) fasta scores: E(): 4e-48, 47.49% id in FT 299 aa, and to Pseudomonas aeruginosa riboflavin kinase/FAD FT synthase RibF or pa4561 TR:Q9HVM3 (EMBL:AE004869) (312 aa) FT fasta scores: E(): 2.6e-47, 48.48% id in 297 aa" FT /db_xref="GOA:Q7VXK2" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/TrEMBL:Q7VXK2" FT /protein_id="CAE42040.1" FT /translation="MKPSLRIYRYPPPPSQRTPCALTIGNFDGVHLGHQAILARVRQEA FT RARGLVPAVMTFEPHPREYFATLNRRPELAPTRISGLRDKLQALAAAGIEQVVVERFDA FT RLAEMSANAFIEDLLVAGLQTRWLLVGEDFRYGHKRSGDIDLLREAGLTHGFEVCTLAD FT ITDRQGHRISSSEVRTALAVGDLDRAAQLLGQPFHISGHVIHGQKLGRELGFPTMNLRV FT APRCATRSGIYVVRVLGLQDRPLPAVASLGVRPTVEDRGRVLLEAHLLDESLDAYGKLV FT RVEFLHKLRDEEKFADLPSLTAAIAQDAQNARAYFAVHGL" FT misc_feature complement(106853..107230) FT /note="HMMPfam hit to PF01687, Riboflavin kinase / FAD FT synthetase" FT CDS 107854..108477 FT /pseudo FT /transl_table=11 FT /gene="purN" FT /locus_tag="BP1755" FT /product="phosphoribosylglycinamide formyltransferase FT (Pseudogene)" FT /EC_number="2.1.2.2" FT /note="Pseudogene. A deletion removed the C-terminal region FT of this CDS. Similar to Escherichia coli FT phosphoribosylglycinamide formyltransferase 1 PurN FT SWALL:Q9F6I6 (EMBL:AF293163) (212 aa) fasta scores: E(): FT 1.8e-36, 54.4% id in 193 aa, and to Ralstonia solanacearum FT probable phosphoribosylglycinamide formyltransferase FT protein PurN or rsc2454 or rs01151 SWALL:Q8XWM0 FT (EMBL:AL646070) (216 aa) fasta scores: E(): 2.4e-45, 63.07% FT id in 195 aa" FT misc_feature 107878..108432 FT /note="HMMPfam hit to PF00551, Formyl transferase" FT misc_feature 107908..107940 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT variation 108475..108477 FT /note="There is a ~140 bp deletion in pertussis, relative FT to parapertussis and bronchiseptica, following this codon" FT CDS 108556..109857 FT /transl_table=11 FT /locus_tag="BP1756" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein Rsc2453 or Rs01153 SWALL:Q8XWM1 (EMBL:AL646070) FT (417 aa) fasta scores: E(): 2.2e-77, 54.41% id in 419 aa, FT and to Neisseria meningitidis fmu and fmv protein, putative FT nmb1351 SWALL:Q9JZ03 (EMBL:AE002483) (418 aa) fasta scores: FT E(): 1e-67, 48.81% id in 420 aa" FT /db_xref="HSSP:1IXK" FT /db_xref="InterPro:IPR001678" FT /db_xref="UniProtKB/TrEMBL:Q7VXK1" FT /protein_id="CAE42042.1" FT /translation="MLGEVLQWTYPADAVLSHWLRAYPGMGGRDRAELAQAVYDVLRHL FT RRYRQFAESGVGPATRRLAILGLAATMNPDVLAEGLGADQAAWLQRIRHIDVATLPRAV FT RASVPDWLDERLAQLDDSEALLDALNRPANLDIRVNPLKAERDPMLTVLRAGPAGRFDP FT QPMPYSPWGIRLAGHPSVNRWPQFEDGSIEVQDEGSQLLALLMGPRRGEMIIDFCAGAG FT GKTLLLGALMRSTGRLYAFDVSAARLARAKPRFARSGLSNVVPVAIDSENDTRVKRLAG FT KAQRVLVDAPCSGIGTLRRNPDLKWRQHPQSIAEMCELQHRILKSAARCVAPGGRLVYA FT TCSLLAEENAEQAERFLAEHPDFERLDAAQLLANRCANLTLSGPYVQLRPDVHGTDGFF FT AAVFERRKPSAAATQEPADVAAETGPGEPEDAAG" FT misc_feature 108928..109767 FT /note="HMMPfam hit to PF01189, NOL1/NOP2/sun family" FT repeat_region 109854..109885 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 109854..110906 FT CDS 109956..110906 FT /transl_table=11 FT /locus_tag="BP1757" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE42043.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 110214..110279 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 110337..110870 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(110875..110906) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(110903..111277) FT /transl_table=11 FT /locus_tag="BP1757A" FT /product="putative exported protein" FT /note="Similar to the N-terminal region of Escherichia coli FT PilL TR:AAL05516 (EMBL:AF399919) (357 aa) fasta scores: FT E(): 3.8, 33.01% id in 106 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VXK0" FT /protein_id="CAE42044.1" FT /translation="MLRLLPALLALAVPAAWAAGPTVQVGDNVTLASYYQIRGADCASL FT RPPLVRIVQPPRLGTATVVQSQGNSGPGGRCAHTAVPVTQIVYRGTQPGQDTVVWEVTH FT QPRQPASRRDSAAIVVVPRN" FT misc_feature complement(111224..111277) FT /note="Signal peptide predicted for BP1757A by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.997 between residues 18 and 19" FT CDS 111539..112747 FT /transl_table=11 FT /locus_tag="BP1758" FT /product="probable fatty acid desaturase" FT /note="Similar to Azotobacter vinelandii stearoyl-CoA FT desaturase TR:Q59162 (EMBL:U37517) (367 aa) fasta scores: FT E(): 7.8e-68, 47.7% id in 348 aa, and to Pseudomonas FT aeruginosa probable fatty acid desaturase pa0286 TR:Q9I6K4 FT (EMBL:AE004466) (392 aa) fasta scores: E(): 2.5e-79, 49.23% FT id in 392 aa" FT /db_xref="GOA:Q7VXJ9" FT /db_xref="InterPro:IPR005804" FT /db_xref="UniProtKB/TrEMBL:Q7VXJ9" FT /protein_id="CAE42045.1" FT /translation="MDSILSFISGGLTQATWWQIVLFTLVVTHITIVSVTVFLHRSQAH FT RGLDLHPAVMHFFRFWLWMTTGMVTKEWVAIHRKHHAKCEKEGDPHSPMLFGIWKVLFR FT GAELYREESANKETMAKFGHGTPDDWLERNIYSKHSLAGVLTMLAIDLALFGAVGLTVW FT AVQMAWIPFWAAGVVNGIGHYWGYRNYNSPDTSTNVFPWGIIIGGEELHNNHHAHGTSA FT KFSAKWYELDIGWGYISILKFFGLAKVKKVAPKLKLESGSKGIDLSTLQGVITHRYEVM FT ARYGDLVKRAAREELSKLKSSRQQDAANCRWTTLRRVRRWLHRNEEVLQPEQRAEVDQA FT IAQNQSLSTLVQMRRELGRLWESSSASSEQLLHDLQAWCQRAQQSGIAGLEQFALHLRR FT YAA" FT misc_feature 111545..112243 FT /note="HMMPfam hit to PF01069, Fatty acid desaturase" FT misc_feature join(111581..111649,111959..112027,112040..112099) FT /note="3 probable transmembrane helices predicted for FT BP1758 by TMHMM2.0 at aa 15-37, 141-163 and 168-187" FT misc_feature 112442..112507 FT /note="Predicted helix-turn-helix motif with score 1213 FT (+3.32 SD) at aa 302-323, sequence SRQQDAANCRWTTLRRVRRWLH" FT CDS 112744..115044 FT /transl_table=11 FT /gene="uvrD" FT /gene_synonym="mutU" FT /gene_synonym="pdeB" FT /gene_synonym="rad" FT /gene_synonym="recL" FT /locus_tag="BP1759" FT /product="DNA helicase II" FT /EC_number="3.6.1.-" FT /note="Similar to Escherichia coli DNA helicase II UvrD or FT MutU or PdeB or Rad or RecL or B3813 SW:UVRD_ECOLI (P03018) FT (720 aa) fasta scores: E(): 1.3e-94, 46.5% id in 772 aa, FT and to Neisseria meningitidis DNA helicase II Nmb0232 FT TR:Q9K1D0 (EMBL:AE002380) (735 aa) fasta scores: E(): FT 1.2e-108, 53.78% id in 766 aa" FT /db_xref="GOA:Q7VRY2" FT /db_xref="InterPro:IPR014017" FT /db_xref="UniProtKB/TrEMBL:Q7VRY2" FT /protein_id="CAE42046.1" FT /translation="MMLEKLNPEQRAAVTLEPQHALVLAGAGSGKTRVLTTRMAWLIQT FT GQASPFALLAVTFTNKAAREMLTRMSTLLPIDTRGLWIGTFHGLCNRMLRAHHRDAGLP FT QAFQILDTTDQLAAIKRLLKAGNIDDEKYPPRDVQRFINGAKEEGLRPGDVEAYDPHRR FT KLIEIYQLYEAQCQREGVVDFAELLLRAYELLSRNAPVREHYQRRFRHILVDEFQDTNT FT LQYKWLRLLAGTGAAIFAVGDDDQSIYAFRGANVGNMADFERDYAHGRVIRLEQNYRSY FT GHILDSANALIGHNTGRLGKNLWTEQGEGEPVRVIEQPSDGMEAQWLVDEIRALINDGR FT MRSEIAVLYRSNAQSRVLEHALFSVGIPYKVYGGLRFFERQEIKHALAYLRLIANPNDD FT TSWMRVVNFPTRGIGARTLEQLSDAARAHDTSLFGAVARVGGKGGSNLAQFAQLIGQMA FT HDTRELPLPELVDHVIEASGLKAHYQTEREGAERLENLNELITAATVFAAEENFEGLPA FT GVVPDHDVSGALMPGVVDAPQPDTLGGLTPLAAFLSHAALEAGDNQAQVGQDAVQLMTV FT HAAKGLEFDAVFITGLEEGLFPHENSIMEPAGLEEERRLMYVAITRARERLYLSLAQSR FT MLHGQTRYAMRSRFLEEIPEQHLKWLSPRAGLHQGGGFGGAAPAWSSRGDAFGRKPTGT FT AAPRQPRGMASGVTVGEQQFRVGQGVRHARFGDGTIIGLSGSGQDAQAQIQFRDVGAKT FT LALGIAKLDIITA" FT misc_feature 112759..114180 FT /note="HMMPfam hit to PF00580, UvrD/REP helicase" FT misc_feature 112816..112839 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(115097..117709) FT /transl_table=11 FT /locus_tag="BP1760" FT /product="putative exported protein" FT /note="Similar to Pseudomonas aeruginosa probable FT siderophore receptor Pa1365 TR:Q9I3X9 (EMBL:AE004565) (813 FT aa) fasta scores: E(): 1.1e-08, 23.6% id in 771 aa, and to FT Escherichia coli hypothetical protein Yddb or B1495 FT SW:YDDB_ECOLI (P31827) (790 aa) fasta scores: E(): 3.1e-72, FT 32.65% id in 781 aa" FT /db_xref="GOA:Q7VXJ8" FT /db_xref="InterPro:IPR011662" FT /db_xref="UniProtKB/TrEMBL:Q7VXJ8" FT /protein_id="CAE42047.1" FT /translation="MSKPILKKRQRTTLAALLLCTAAATHAATQSPALAFDLPAQPLDA FT ALRAYARQAGVALSFDAREAARKQAPALRATMTAQAALQHLLRGSGLTWRAAGANRYAV FT VRAADAAAAWPLEPVRVYGDATRERVYTEQEIAATPASNRDLSALIATHPAIRESGTAE FT DGANRGTLNVEDISIHGASPYQNLFLIDGVGATSRVDPANKSRNFTDVPSNPQAYFLDT FT ALLGEVRVFDNSIPVEYGAFNGGVVDARLRRPSGENHVKLDYRWNGSNLTRQKIAPGNA FT EDWLQGTPDFTPSWRKRFHTASADIALGERAGLVLGLSRRISRIERWRLGAVGHLDRPE FT RDDSLDRVDNLLGKFSLRLDADTITDLSLKYADRREHLVSNFFRDTDWRNRHGAQGAVW FT NIEHTLRGGKLSAQLGWDRFDSHRNSAHTEFVQHDFVDGRPGFASGGYGKDEKGQRNLT FT LATRLDLAPIQTGPVSHASYVGLQVEHTGARFKRYNQSYSYRAVHREDGTEKHFSKVRH FT LPGSVTLDYTRLGLYASDELTWRRWTLNAGLRYDRDNFLHHRTLAPRARLDWDVLGSDD FT TVLSAGWSRYYGGHVLKIAMQEEFSRLSEQVLDHHGDPVPNGRKITRVNYDGLRSPYDD FT EWAFSLAQRAYGIRGVLTFVHRNGRDQVTRRGDSRVGYRYTNEGNSRTDGWNLTLANEE FT AWRLGETLWHAQASWGYQRNKRNLNLAEGYESSPVERADYVYYNGKRIPAANLPPSNFN FT LPHKVSLDLTGHWPRHGLTWSNTVNWHGRRKEIAFVDTGPAPEYLDMYESLSAPSYWSW FT DTRLIWQPPFARQVTLALDVLNVLNRIAALTTNPRDSLIDARRYRTGREIWLQVGYRY" FT misc_feature complement(117629..117709) FT /note="Signal peptide predicted for BP1760 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.967 between residues 27 and 28" FT CDS complement(118069..119994) FT /transl_table=11 FT /locus_tag="BP1761" FT /product="probable ABC transporter ATP-binding protein" FT /note="Similar to Escherichia coli hypothetical ABC FT transporter ATP-binding protein YheS or B3352 or Z4713 or FT Ecs4203 SW:YHES_ECOLI (P45535) (637 aa) fasta scores: E(): FT 2.4e-90, 50.31% id in 632 aa, and to Pasteurella multocida FT hypothetical protein Pm1582 TR:Q9CKM9 (EMBL:AE006195) (640 FT aa) fasta scores: E(): 1.6e-89, 49.68% id in 638 aa" FT /db_xref="GOA:Q7VXJ7" FT /db_xref="HSSP:1F2T" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VXJ7" FT /protein_id="CAE42048.1" FT /translation="MIRASGLTLRRGTKVLLDGADFVVHPGERVGIVGKNGAGKSSLFA FT LLTGALDPDAGNLDLPAGWRIASVQQEIAADAQAAREFVIDGDTHLRALQAQRAALTDD FT QGTQIAETEAALIEAGAWSAASRAEQLLAGLGFKPSEWMQPVRSFSGGWRMRLVLARAL FT MAPSELLLLDEPTNHLDLDAMLWLEKWLTAYPGTVLLISHDTEFLDAVARAILHFDQAK FT LQRYRGGYQDFLLQRAERLRQANIAYERQTREAARLQGFIDRFKAKASKAKQAQSRVKA FT LARMEALAPIHAESGIDIRIPSPDHMPDPLLAMEHMDAGYGGAEPILRDVTLMVRAGSR FT IGVLGANGAGKSTLIKTLADELAPHAGTRRASRGLAIGYFHQHQLDMLDLDSTPLAHLA FT RLAPEVREQELRNYLGGFGFSGDTVLSKVGPMSGGEKARLALSLIVWQKPNLLLLDEPS FT NHLDVETREALATALAEFSGSMLLVSHDRHLLRTTVDSFWIVADGGVREFDGDLEDYRD FT WLAARNAGERAAAREAAAGEPGVAVDRKAQRRLEAEQRQRLATLRKPLAAKLAKVEADM FT ERARARLQELDAVIADADLYSDARRTERQQVMTEHGESGKRLNDLEEQWLEIQQALEEI FT EQDNAA" FT misc_feature complement(118486..118983) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(118660..118704) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature." FT misc_feature complement(118939..118962) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(119332..119916) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(119506..119550) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature." FT misc_feature complement(119872..119895) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(119991..120887) FT /transl_table=11 FT /locus_tag="BP1762" FT /product="putative adenine-specific methylase" FT /note="Similar to Neisseria meningitidis hypothetical FT adenine-specific methylase Nmb1655 SW:YG55_NEIMB (Q9JYC0) FT (303 aa) fasta scores: E(): 1.9e-60, 55.4% id in 296 aa, FT and to Escherichia coli hypothetical adenine-specific FT methylase YfcB or B2330 SW:YFCB_ECOLI (P39199) (310 aa) FT fasta scores: E(): 9.6e-56, 50.51% id in 289 aa" FT /db_xref="GOA:Q7VXJ6" FT /db_xref="InterPro:IPR017127" FT /db_xref="UniProtKB/TrEMBL:Q7VXJ6" FT /protein_id="CAE42049.1" FT /translation="MQNNNRQELQTLRDLIRYAVSRLNAARVALGHGSDNAWDEAVYLV FT LHGLHLPPDTLDPFLDARVLPSERSRVLDLIDRRVTERLPAAYLTGEAWLRGHRFHVDR FT RVIVPRSPIAELLDEGLAPWVRDPLQVERALDMCTGSGCLAILAALAFPVAQVDAVDVS FT SDALEVAARNVAEYGLQDRLTLRQGNLFEALPAAAYDVIVCNPPYVNQASMGALPQEYR FT HEPALALAGGADGMDLVRRILAAAPGYLSADGVLVLEIGHERDHFEAAFPDLQPVWLDT FT AESSDQILLLTREQLNT" FT misc_feature complement(120264..120284) FT /note="ScanRegExp hit to PS00092, N-6 Adenine-specific DNA FT methylases signature." FT CDS complement(120894..122033) FT /transl_table=11 FT /gene="dapE" FT /locus_tag="BP1763" FT /product="succinyl-diaminopimelate desuccinylase" FT /EC_number="3.5.1.18" FT /note="Identical to the previously sequenced Bordetella FT pertussis DapE TR:Q9ZEX1 (EMBL:AJ009834) (379 aa) fasta FT scores: E(): 1.3e-146, 96.04% id in 379 aa, and similar to FT Escherichia coli succinyl-diaminopimelate desuccinylase FT DapE or MsgB or B2472 SW:DAPE_ECOLI (P24176) (375 aa) fasta FT scores: E(): 5.5e-86, 58.49% id in 371 aa" FT /db_xref="GOA:Q7VXJ5" FT /db_xref="InterPro:IPR011650" FT /db_xref="UniProtKB/Swiss-Prot:Q7VXJ5" FT /protein_id="CAE42050.1" FT /translation="MTASAVLDLVKDLIARPSVTPDDVDCQMLLAQRLERIGFQCETIA FT RGGVTNLWARRGAGAPLTVFAGHTDVVPPGPRDKWDSDPFVPTERDGFLYGRGAADMKS FT SIAAFVVAAEEFVAVHPEHPGSIALLITSDEEGPAVDGTVIVCDELRQRGEQLDYCIVG FT EPTSTEALGDVCKNGRRGSLSGRLLVKGVQGHVAYPHLARNPVHQLAPALTELVAIEWD FT QGNEYFPPTTFQVSNLHAGTGATNVVPGEAVALFNFRFSTASTPGQLKARVHEVLDRHG FT LEYQLDWELGGEPFLTPRGSLTDALVSAIQAETGLQAELSTTGGTSDGRFIARICPQVI FT EFGPCNATIHKVNERIELSSLAPLKNIYRRTLENLLLAD" FT misc_feature complement(121056..122006) FT /note="HMMPfam hit to PF01546, Peptidase family FT M20/M25/M40" FT CDS complement(122033..122854) FT /transl_table=11 FT /gene="dapD" FT /locus_tag="BP1764" FT /product="2,3,4,5-tetrahydropyridine-2-carboxylate FT N-succinyltransferase" FT /EC_number="2.3.1.117" FT /note="Identical to the previously sequenced Bordetella FT pertussis 2,3,4,5-tetrahydropyridine-2-carboxylate FT N-succinyltransferase DapD SW:DAPD_BORPE (Q9ZEX2) (273 aa) FT fasta scores: E(): 2.3e-107, 100% id in 273 aa, and similar FT to Escherichia coli FT 2,3,4,5-tetrahydropyridine-2-carboxylate FT N-succinyltransferase DapD or B0166 SW:DAPD_ECOLI (P03948) FT (274 aa) fasta scores: E(): 3.4e-76, 72.01% id in 268 aa" FT /db_xref="GOA:P0A4U8" FT /db_xref="HSSP:1TDT" FT /db_xref="InterPro:IPR018357" FT /db_xref="UniProtKB/Swiss-Prot:P0A4U8" FT /protein_id="CAE42051.1" FT /translation="MTLDLQTTIEQAWENRANLSPVDASAEVRDAVEHTIDGLDLGRLR FT VAEKIDDQWIVHQWIKKAVLLSFRLHDNAVMGQGPLQFYDKVPTKFAGYGEAAFKAGGY FT RVVPPAVARRGAFIARNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGV FT GIGGVLEPLQANPTIIEDNCFIGARSEVVEGVVVEENSVLAMGVFLSQSTKIYDRATGK FT VSYGRVPSGSVVVPGSLPSEDGSHSLACAVIVKRVDAQTRAKTSINDLLRA" FT misc_feature complement(122204..122257) FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature complement(122258..122311) FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature complement(122354..122407) FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature complement(122366..122452) FT /note="ScanRegExp hit to PS00101, Hexapeptide-repeat FT containing-transferases signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature complement(122408..122461) FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT CDS complement(join(122880..123602,123601..124074)) FT /pseudo FT /transl_table=11 FT /gene="dapC" FT /locus_tag="BP1765" FT /product="N-succinyl-L,L-diaminopimelate aminotransferase FT (Pseudogene)" FT /EC_number="2.6.1.17" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 158. The frameshift occurs within FT a dimeric tract of (CG)2. Identical to the previously FT sequenced Bordetella pertussis DapC TR:Q9ZEX3 FT (EMBL:AJ009834) (397 aa) fasta scores: E(): 4.1e-154, FT 96.48% id in 398 aa, and similar to Pseudomonas aeruginosa FT probable aminotransferase Pa3659 TR:Q9HXY0 (EMBL:AE004785) FT (402 aa) fasta scores: E(): 7.4e-88, 58.1% id in 401 aa" FT /db_xref="PSEUDO:CAE42052.1" FT misc_feature complement(join(122889..123602,123601..124074)) FT /note="HMMPfam hit to PF00155, Aminotransferase class I and FT II" FT variation complement(123602..123605) FT /note="(CG)2 in pertussis; (CG)3 in parapertussis and FT bronchiseptica" FT misc_feature complement(124012..124041) FT /note="ScanRegExp hit to PS00215, Mitochondrial energy FT transfer proteins signature." FT tRNA 124120..124206 FT /note="tRNA Leu anticodon TAG, Cove score 68.96" FT CDS complement(124425..124754) FT /transl_table=11 FT /locus_tag="BP1766" FT /product="putative exported protein" FT /note="no significant database matches. Similar to BP0266, FT BP2719, BP3099, BP3683, and BP3731" FT /db_xref="UniProtKB/TrEMBL:Q7VXJ4" FT /protein_id="CAE42053.1" FT /translation="MKTLATALMLSLGPLSAGAQAAPNAEPNNLPYQGVYGQTDANAPT FT RAQVQAELAQAKANGQYTFGELEYPAAQTGSTAAPSRDQVKAELAQAKASGQYTFGELD FT YPPRN" FT misc_feature complement(124692..124754) FT /note="Signal peptide predicted for BP1766 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.903 between residues 21 and 22" FT CDS 125137..126393 FT /transl_table=11 FT /gene="phg" FT /locus_tag="BP1767" FT /product="autotransporter" FT /note="Identical to the previously sequenced Bordetella FT pertussis Phg protein TR:Q9Z5R3 (EMBL:AJ009835) (418 aa) FT fasta scores: E(): 1.6e-154, 100% id in 418 aa" FT /db_xref="GOA:Q9Z5R3" FT /db_xref="InterPro:IPR006315" FT /db_xref="UniProtKB/TrEMBL:Q9Z5R3" FT /protein_id="CAE42054.1" FT /translation="MKPTSILARLPRYLGACALAALAALAVAPLAPAQAQTPLPAGLGA FT AEVRQYLSGLPSDALRQQASWLAPALLRPYLSGLTDAQLRQYVQALTPGQITQGLAALT FT PAQRARLQREFERQARRQVQQAVRAEVAARSARAVAMGQSASMLLLDAEMGTLAQRQGD FT LRRGHDEGAFWARGSANRFKVDTPDTPAFDLRVEYLTLGADHGWRLDTGRLYLGAYAGV FT SRARMDDNDIMHGRIESRFLGTYLTYVDNGGFYVDAVSKLGRIDESVSFDLPLGLGDYD FT DDISHTTYTGSAEAGYHFKLPQRWFVEPQAQVIYSRSSQTSVQGRAGVRAGRDFTLAGG FT ATLRPYVSASYLHEFSHDDSVDFGGKSYDAELPGSRWQLGAGAALDVGAHRAYADLRYG FT HGANISQDLSLNIGYAYRF" FT misc_feature 125137..125241 FT /note="Signal peptide predicted for BP1767 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.914 between residues 35 and 36" FT CDS 126468..126749 FT /transl_table=11 FT /locus_tag="BP1768" FT /product="putative membrane protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VXJ3" FT /protein_id="CAE42055.1" FT /translation="MVYEDFFWFMAALVALALVGGALFGRLGRLAHSVIAMLGLAIAVG FT VAVLLGARGEDVGPYAPLLAIAAFMFCLMIGGAATLVTRRVRRRHLTH" FT misc_feature 126468..126560 FT /note="Signal peptide predicted for BP1768 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.626) with cleavage site FT probability 0.236 between residues 31 and 32" FT misc_feature join(126483..126551,126564..126617,126645..126713) FT /note="3 probable transmembrane helices predicted for FT BP1768 by TMHMM2.0 at aa 6-28, 33-50 and 60-82" FT CDS 126791..127111 FT /transl_table=11 FT /locus_tag="BP1769" FT /product="hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VXJ2" FT /protein_id="CAE42056.1" FT /translation="MDISSHLLAELANGVCLETRVDGQTIGTYVVLGPADLDAIADIVP FT RQRVEEGADIHAAAVDSVDGAQMEIDQVIENMNPGDVAVFFCADGDCYGAALDLLGLPV FT DE" FT CDS 127418..127621 FT /transl_table=11 FT /gene="cspA" FT /locus_tag="BP1770" FT /product="cold shock-like protein" FT /note="Identical to the previously sequenced Bordetella FT pertussis cold shock-like protein CspA SW:CSPA_BORPE FT (Q9Z5R4) (67 aa) fasta scores: E(): 3.4e-26, 100% id in 67 FT aa, and similar to Ralstonia solanacearum probable cold FT shock-like CspC transcription regulator protein CspC FT TR:CAD16944 (EMBL:AL646074) (67 aa) fasta scores: E(): FT 5.5e-17, 67.69% id in 65 aa" FT /db_xref="GOA:P0A352" FT /db_xref="HSSP:1MJC" FT /db_xref="InterPro:IPR012340" FT /db_xref="UniProtKB/Swiss-Prot:P0A352" FT /protein_id="CAE42057.1" FT /translation="METGVVKWFNAEKGYGFITPEAGGKDLFAHFSEIQANGFKSLEEN FT QRVSFVTAMGPKGPQATKIQIL" FT misc_feature 127418..127618 FT /note="HMMPfam hit to PF00313, 'Cold-shock' DNA-binding FT domain" FT misc_feature 127460..127519 FT /note="ScanRegExp hit to PS00352, 'Cold-shock' domain FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 127705..128271 FT /transl_table=11 FT /locus_tag="BP1771" FT /product="conserved hypothetical protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc2122 TR:Q9A6H2 (EMBL:AE005885) (187 aa) fasta FT scores: E(): 1.9e-37, 54.74% id in 179 aa, and to Rhizobium FT meliloti hypothetical protein Smc00282 TR:CAC46289 FT (EMBL:AL591788) (221 aa) fasta scores: E(): 5.3e-40, 54.25% FT id in 188 aa" FT /db_xref="InterPro:IPR010323" FT /db_xref="UniProtKB/TrEMBL:Q7VXJ1" FT /protein_id="CAE42058.1" FT /translation="MSDSMAGPAALPDAATVLAFWREAGPARWYAKDEQFDRTFTMRFE FT AAHMAAARGELMAWSASAEGMLALLILLDQFPRNAYRGTGHMFATDGLARQICEQAIAA FT GLDRQGPEDLRQFYYMPLEHAEDLAAQEQCVSLMAPLHAETLRWAEIHRDIIARFGRFP FT HRNTVLGRATTAEEQQFLDQGGFSG" FT CDS 128617..128817 FT /transl_table=11 FT /gene="cspA" FT /locus_tag="BP1772" FT /product="cold shock-like protein" FT /note="Similar to Bordetella pertussis cold shock-like FT protein CspA SW:CSPA_BORPE (Q9Z5R4) (67 aa) fasta scores: FT E(): 1.2e-15, 71.66% id in 60 aa, and to Escherichia coli FT cold shock protein CspA or B3556 or Z4981 or Ecs4441 or FT Sty4153 SW:CSPA_ECOLI (P15277) (69 aa) fasta scores: E(): FT 6.2e-14, 68.42% id in 57 aa" FT /db_xref="GOA:Q7VXJ0" FT /db_xref="HSSP:1C9O" FT /db_xref="InterPro:IPR019844" FT /db_xref="UniProtKB/TrEMBL:Q7VXJ0" FT /protein_id="CAE42059.1" FT /translation="MATGIVKWFNAEKGYGFIMPDDGSKDLFAHYSEICSEGYKSLQEN FT QRVSFEVGQGPKGPRGQAPRT" FT misc_feature 128617..128793 FT /note="HMMPfam hit to PF00313, 'Cold-shock' DNA-binding FT domain" FT misc_feature 128659..128718 FT /note="ScanRegExp hit to PS00352, 'Cold-shock' domain FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(128929..129489) FT /transl_table=11 FT /locus_tag="BP1773" FT /product="putative membrane protein" FT /note="Similar to Bradyrhizobium japonicum PipA TR:Q9L8L2 FT (EMBL:AF200320) (193 aa) fasta scores: E(): 1.6e-48, 76.16% FT id in 172 aa, and to Pasteurella multocida hypothetical FT protein Pm1258 SW:YC58_PASMU (P57929) (192 aa) fasta FT scores: E(): 4.5e-36, 56.52% id in 184 aa" FT /db_xref="GOA:Q7VXI9" FT /db_xref="InterPro:IPR005134" FT /db_xref="UniProtKB/TrEMBL:Q7VXI9" FT /protein_id="CAE42060.1" FT /translation="MHPIQEPRLGPLPALIFSSRWLQLPLYLGLIVAQGVYVLLFLKEL FT WHLVTHTLSFGEQEIMLIVLGLIDVVMISNLLVMVIVGGYETFVSRLRLEDHPDQPEWL FT SHVNASVLKVKLAMAIIGISSIHLLRTFIEASNLGSPNSRFTETGVMWQTIIHVVFILS FT AIGIAYVDRLTSQSVGHGAHPSH" FT misc_feature complement(join(128980..129045,129238..129303, FT 129364..129429)) FT /note="3 probable transmembrane helices predicted for FT BP1773 by TMHMM2.0 at aa 20-42, 62-84 and 148-170" FT CDS 129686..130996 FT /transl_table=11 FT /gene="tig" FT /locus_tag="BP1774" FT /product="trigger factor" FT /note="Similar to Escherichia coli trigger factor Tig or FT B0436 or Z0541 or Ecs0490 SW:TIG_ECOLI (P22257) (432 aa) FT fasta scores: E(): 1.6e-53, 38.94% id in 434 aa, and to FT Neisseria meningitidis trigger factor Tig or Nmb1313 FT SW:TIG_NEIMB (Q9JZ37) (437 aa) fasta scores: E(): 8.8e-62, FT 44% id in 434 aa" FT /db_xref="GOA:Q7VXI8" FT /db_xref="InterPro:IPR008881" FT /db_xref="UniProtKB/Swiss-Prot:Q7VXI8" FT /protein_id="CAE42061.1" FT /translation="MQPVVETLSGLERRVDLAVSVAEVEKEVQAQLKRVGRTAKVAGFR FT PGKAPLAMLERSHGPGIRYDVINSLVGRAFEQAVDGAKLRVAGSPTLTPKTEGVAEDTL FT AFTATFEVYPEVTVPDLSALAVTRYDTPVTDAEVNQTLDVLRKQRAKFEIREGRASQDG FT DRVVLDFAGTIDGVPFEGGKAEDFPFVLGQGRMLPEFEEAALGLKAGESKVFPLKFPDD FT YQGKEVAGKTAEFTITVKEVAEGVLPEVDAEFAKSLGQAEGDVEKLKADIRTNIEREVK FT ARLQGRTKGSVMDALVEAGKFDVPKALVDSDVEGRIAAAREELKQRGVPNADSVPMPAE FT VFSTESERRVRLGLLVSELVKQAQLQAKPEQVRARIEEFAQNYEQPAQVVSYYLADRQR FT RAEIEAIVLEDNVVAHVLENAKVADEKVPFDQLMGMA" FT misc_feature 130358..130381 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 130999..131652 FT /transl_table=11 FT /gene="clpP" FT /gene_synonym="lopP" FT /locus_tag="BP1775" FT /product="ATP-dependent Clp protease proteolytic subunit" FT /EC_number="3.4.21.92" FT /note="Similar to Escherichia coli ATP-dependent Clp FT protease proteolytic subunit ClpP or LopP or B0437 or Z0542 FT or Ecs0491 SW:CLPP_ECOLI (P19245) (207 aa) fasta scores: FT E(): 1.3e-50, 68.91% id in 193 aa, and to Neisseria FT meningitidis ATP-dependent Clp protease proteolytic subunit FT ClpP or Nma1525 SW:CLPP_NEIMA (Q9JU33) (204 aa) fasta FT scores: E(): 3.7e-53, 74.09% id in 193 aa" FT /db_xref="GOA:Q7VXI7" FT /db_xref="InterPro:IPR018215" FT /db_xref="UniProtKB/Swiss-Prot:Q7VXI7" FT /protein_id="CAE42062.1" FT /translation="MQRFTDFYAAMHGGSSVTPTGLGYIPMVIEQSGRGERAYDIYSRL FT LRERLIFLVGPVNDNTANLVVAQLLFLESENPDKDISFYINSPGGSVYAGMAIYDTMQF FT IKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQIQARE FT ILDLRERLNRILAENTGQPVERIAVDTERDNFMSAEDAVSYGLVDKVLTSRAQT" FT misc_feature 131068..131637 FT /note="HMMPfam hit to PF00574, Clp protease" FT misc_feature 131395..131436 FT /note="ScanRegExp hit to PS00382, Endopeptidase Clp FT histidine active site. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 131757..133061 FT /transl_table=11 FT /gene="clpX" FT /gene_synonym="lopC" FT /locus_tag="BP1776" FT /product="ATP-dependent Clp protease ATP-binding subunit" FT /note="Similar to Escherichia coli ATP-dependent Clp FT protease ATP-binding subunit ClpX or LopC or B0438 or Z0543 FT or Ecs0492 SW:CLPX_ECOLI (P33138) (423 aa) fasta scores: FT E(): 2.5e-101, 71.15% id in 423 aa, and to Pseudomonas FT aeruginosa ATP-dependent Clp protease ATP-binding subunit FT ClpX or Pa1802 TR:Q9I2U0 (EMBL:AE004606) (426 aa) fasta FT scores: E(): 2.2e-104, 72.72% id in 418 aa" FT /db_xref="GOA:Q7VXI6" FT /db_xref="InterPro:IPR010603" FT /db_xref="UniProtKB/Swiss-Prot:Q7VXI6" FT /protein_id="CAE42063.1" FT /translation="MPEKKGSADAKVLHCSFCNKSQHEVRKLIAGPSVFICDECIDLCN FT DIIREEAQATARAAIRSELPTPAEIKTFLDQYVIGQTSPKRMLAVAVYNHYKRIRHGEI FT KGDEVELSKSNIMLIGPTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENII FT QKLLQNCNYDVEKAQRAIIYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAS FT VPPQGGRKHPNQDFVQVDTTNILFIVGGAFDGLEKVIRDRTEKSGIGFSAAVRAKSERG FT VGELFSEAEPEDLIKFGLIPELVGRLPVVATLDELDEAVLVQILTEPKNALVKQFQKLF FT AMEGAELDVRPDALKAISRKALKRKTGARGLRSILEGALLDTMYDLPSQGNVSRVVLEA FT NAVEGVGKPLLIYADESEAASGEKAGRGEVRDAAA" FT misc_feature 132099..132722 FT /note="HMMPfam hit to PF00004, ATPase family associated FT with various cellular activities (AAA)" FT misc_feature 132114..132137 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 133250..135703 FT /transl_table=11 FT /gene="lon" FT /gene_synonym="capR" FT /gene_synonym="deg" FT /gene_synonym="muc" FT /gene_synonym="lopA" FT /locus_tag="BP1777" FT /product="ATP-dependent protease La" FT /EC_number="3.4.21.53" FT /note="Similar to Escherichia coli ATP-dependent protease FT La Lon or CapR or Deg or Muc or LopA or B0439 SW:LON_ECOLI FT (P08177) (784 aa) fasta scores: E(): 5.6e-127, 68.24% id in FT 781 aa, and to Neisseria meningitidis ATP-dependent FT protease La Lon or Nma1398 TR:Q9JUC0 (EMBL:AL162755) (820 FT aa) fasta scores: E(): 4.7e-177, 67.83% id in 799 aa" FT /db_xref="GOA:Q7VRY1" FT /db_xref="HSSP:1RR9" FT /db_xref="InterPro:IPR003959" FT /db_xref="UniProtKB/TrEMBL:Q7VRY1" FT /protein_id="CAE42064.1" FT /translation="MSASQTLSSDPIDLPLLPLRDVVVFPHMVIPLFVGRPRSIRALEV FT AMEAGKSIMLVAQKSAGKDDPTPEDVYEIGCVASILQMLKLPDGTVKVLVEGTQRARID FT SIEDVDSHFTCQVTPIEPDTLQGSETEALRRAIVAQFEQYVKLNKKIPPEILTSLAGID FT DAGRLADTIAAHLPLKLEQKQKMLEVVVTAERLEGLLTQLETEIDILQVEKRIRGRVKK FT QMEKSQRDYYLNEQVKAIQKELGEGEEGADIEELEKKIIAAHMPKEARKKADGELKKLK FT LMSPMSAEATVVRNYIDTLINLPWKRKSKINNSIGNAERVLDDDHYGLEKVKERILEYL FT AVQQRVDKVKAPILCLVGPPGVGKTSLGQSIAKATNRKFVRMALGGVRDEAEIRGHRRT FT YIGSMPGKILQNMSKVGVRNPLFLLDEIDKLGMDFCGDPSSALLEVLDPEQNHTFQDHY FT IEVDFDLSDVMFVATSNTLNIPPALLDRMEVIRLSGYTEEEKIHIARDHLLPKLMKNNG FT VKDNELTVDDSALRDIVRYYTREAGVRALEREVGKICRKVVKQLLIKSDEAKAAGNKTA FT EAQTVLVNGDNLNDFLGVRRYTFGMAEKENQIGQVTGLAWTEVGGDLLTIEVADMPGKG FT NIQRTGSLGDVMKESVEAARTVVRSRARRLGFADSVFEKHDMHVHVPEGATPKDGPSAG FT IAITTAMVSALSRIPVRADVAMTGEITLRGEVLPIGGLKEKLLAAHRGGIKTVLIPEEN FT VKDLAEIPDNVKNFLEIVPVRWIDKVLELALERMPEPLSEEEAVKEAIVAKPAEAGAAD FT PVMKH" FT misc_feature 133286..133864 FT /note="HMMPfam hit to PF02190, ATP-dependent protease La FT (LON) domain" FT misc_feature 134306..134890 FT /note="HMMPfam hit to PF00004, ATPase family associated FT with various cellular activities (AAA)" FT misc_feature 134321..134344 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 135314..135340 FT /note="ScanRegExp hit to PS01046, ATP-dependent serine FT proteases, lon family, serine active site. Confirmed by FT InterPro eMOTIF pattern match." FT CDS complement(135827..136726) FT /transl_table=11 FT /locus_tag="BP1778" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa1826 TR:Q9I2R9 (EMBL:AE004609) FT (301 aa) fasta scores: E(): 5e-36, 43.19% id in 294 aa, and FT to Ralstonia solanacearum probable transcription regulator FT protein Rsp1326 TR:CAD18477 (EMBL:AL646084) (306 aa) fasta FT scores: E(): 1.2e-27, 38.17% id in 296 aa" FT /db_xref="GOA:Q7VXI5" FT /db_xref="HSSP:1IXC" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VXI5" FT /protein_id="CAE42065.1" FT /translation="MLDLRRVRQFVTLGETLNFRRAADRLHMTQPPLTVAIQKLEAELG FT TRLFERGGSGGVSLTPGGHAALAEARRLLFHNAQLLAAARAASSGTGGALKVGFVGSTT FT NGVLQRIVRLFRVEYPGVELVLKEGTSVRIAERVDSGDLDVGLVRTPLLTPSRSHLAPL FT LAEDFVAALPLGNPLAQKADIRMEELATESFVFYSREDAAGLHATAMLACQRAGFLPRV FT TQEATQVQTVLSLVESGLGVALVPAVMQYNPSPRVAYRAIADVSPAAEIGLALLLPEPS FT SAAAQRFREVALHCFGDD" FT misc_feature complement(136286..136717) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(136583..136675) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT misc_feature complement(136613..136678) FT /note="Predicted helix-turn-helix motif with score 1471 FT (+4.20 SD) at aa 34-55, sequence LNFRRAADRLHMTQPPLTVAIQ" FT CDS 137005..138228 FT /transl_table=11 FT /locus_tag="BP1779" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0446 TR:Q9I672 (EMBL:AE004482) (407 aa) fasta FT scores: E(): 7.6e-94, 56.71% id in 402 aa, and to FT Acinetobacter spNCIMB9871 L-carnitine dehydrogenase-like FT protein Orf17 TR:BAB61747 (EMBL:AB026669) (405 aa) fasta FT scores: E(): 4.3e-82, 51.11% id in 405 aa. Also similar to FT BP0143 (68.059% identity in 407 aa overlap), and BP3309 FT (57.644% identity in 399 aa overlap)." FT /db_xref="GOA:Q7VXI4" FT /db_xref="HSSP:1PQY" FT /db_xref="InterPro:IPR003673" FT /db_xref="UniProtKB/TrEMBL:Q7VXI4" FT /protein_id="CAE42066.1" FT /translation="MDTALGHIKVLDLTRILAGPWATQTLADMGAEVVKVERPRVGDDT FT RAWGPPFLKDSEGNETADSSYFLAANRGKKSITVDLAHPDGQALIRDLAATADVVVENY FT KVGTLARYGLDYESLKAINPRLVYCSITGFGQDGPYASLPDYDFVFQGMGGLMSITGQP FT EGTPGDEPMKVGIAISDLLTGMYATTAILAALERRHVSGTGQHVDMSLLDCVVSISSYQ FT AINHFLSGKIPRRMGNAHSNMVPYQVFRCKEGDVIVAVGNDGQYRALCKLIERDDLATD FT ERYATPGQRNRNRDTLIPEIAQAMLARTMQEWVALMEAANVPCGPIYNMQQMFEDPHVQ FT HRGMRLSLPHSAGVQAPAVASPIRLSDTPIQYGRSAPLLGEHTDSVLAQRLGLAPARIA FT ELRARGAI" FT misc_feature 137233..137814 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family" FT CDS 138294..139265 FT /transl_table=11 FT /locus_tag="BP1780" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni Orf4 protein FT TR:Q9S155 (EMBL:AB024335) (325 aa) fasta scores: E(): FT 6.8e-40, 39.93% id in 313 aa, and to Variovorax paradoxus, FT and 2,4-diphenoxyacetic acid gene cluster TR:AAK81675 FT (EMBL:AB028643) (337 aa) fasta scores: E(): 1.7e-32, 35.57% FT id in 312 aa" FT /db_xref="GOA:Q7VXI3" FT /db_xref="InterPro:IPR002155" FT /db_xref="UniProtKB/TrEMBL:Q7VXI3" FT /protein_id="CAE42067.1" FT /translation="MLRHTFIRAALAAALAVCAAGAHAQAKPSSIRLVVPYPAGGAADQ FT IARLVANDAGAILGTPIVIENKGGAGGMIAAESVLQAAPDGATFFVGSNAPIVINQAIY FT EKMSYDPAKDFVPVAGMGKAPLLLVTRKDLGTADVKALAELGKREAGKLTMGSASSGNI FT THLAGEYAASQMGFKVTHVPFKGSAPAITSLMGGNIDIMFDALPSCMAQAESGRIVPLA FT ILDDQRFPQLRDVPTAKELGYSGLEAAAWFGVMACAGTPDSSIGAMNKAINQALQKQEL FT IDKLRRIGAQPMPGSQQDFARFIDAERKQWVPLAKSLGVRAD" FT misc_feature 138294..138365 FT /note="Signal peptide predicted for BP1780 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.878 between residues 24 and 25" FT misc_feature 138330..138371 FT /note="ScanRegExp hit to PS00099, Thiolases active site." FT CDS 139332..139733 FT /transl_table=11 FT /locus_tag="BP1781" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium leguminosarum nodulation FT protein N NodN SW:NODN_RHILV (P08634) (161 aa) fasta FT scores: E(): 4e-18, 43.84% id in 130 aa, and to FT Mycobacterium tuberculosis hypothetical 16.0 kDa protein FT rv0130 or mtci5.04 TR:P96807 (EMBL:Z92770) (151 aa) fasta FT scores: E(): 6.5e-20, 48.43% id in 128 aa" FT /db_xref="GOA:Q7VXI2" FT /db_xref="InterPro:IPR002539" FT /db_xref="UniProtKB/TrEMBL:Q7VXI2" FT /protein_id="CAE42068.1" FT /translation="MGQPIVVDQSAIDTFGDVVHDRQWIHVDPVRAAAESPFGTTIAHG FT LLTLSLITGWYHQLFEFPGRKLALNYGFDKVRFPAPVPSGSALVGSFRLARVDELGPDE FT ARCLWEVDVRVAGAERPAMVAEWLMQLRY" FT misc_feature 139332..139670 FT /note="HMMPfam hit to PF01575, MaoC like domain" FT CDS 139753..140550 FT /transl_table=11 FT /locus_tag="BP1782" FT /product="probable enoyl-CoA hydratase/isomerase" FT /EC_number="4.2.1.17" FT /note="Similar to Escherichia coli probable enoyl-CoA FT hydratase PaaG or B1394 SW:PAAG_ECOLI (P77467) (262 aa) FT fasta scores: E(): 4e-24, 38.79% id in 250 aa, and to FT Caulobacter crescentus enoyl-CoA hydratase/isomerase family FT protein cc2575 TR:Q9A582 (EMBL:AE005925) (265 aa) fasta FT scores: E(): 4.2e-25, 35.84% id in 265 aa" FT /db_xref="GOA:Q7VXI1" FT /db_xref="HSSP:1HZD" FT /db_xref="InterPro:IPR018376" FT /db_xref="UniProtKB/TrEMBL:Q7VXI1" FT /protein_id="CAE42069.1" FT /translation="MSVLEISRVGACAVLTLNRPAARNALDMDLRNALAKALPEIRDDA FT TVRAVVLTGAGGHFCAGGDIRAIAAGQGNADVFEGRNRILSMQRWFDGLVDLEKPVIAA FT VDGVAFGAGLSLALAADFVLASPRATFCAVFARLGYVPDLGGMYLLPRAVGLARAKALA FT FSARVVGAPEALEMGIAHQLVDDRPVLDAALELAGRFEQAPAGALGIVKSVMNHAFESD FT RRTVYMQEALAQALCRESAFHQEAARRFLDKQAPLYQWPQEQQ" FT misc_feature 139789..140307 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT misc_feature 140056..140118 FT /note="ScanRegExp hit to PS00166, Enoyl-CoA FT hydratase/isomerase signature." FT CDS 140547..140978 FT /transl_table=11 FT /locus_tag="BP1783" FT /product="conserved hypothetical protein" FT /note="Similar to Pyrococcus abyssi AcaC protein or Pab0908 FT TR:Q9UYY6 (EMBL:AJ248287) (134 aa) fasta scores: E(): FT 1.3e-05, 29.83% id in 124 aa, and to Archaeoglobus fulgidus FT conserved hypothetical protein Af1292 TR:O28977 FT (EMBL:AE001015) (136 aa) fasta scores: E(): 3.8e-05, 29.66% FT id in 118 aa" FT /db_xref="InterPro:IPR002878" FT /db_xref="UniProtKB/TrEMBL:Q7VXI0" FT /protein_id="CAE42070.1" FT /translation="MTEHPQAASALLPQQEYFAHLADGRFMIQRSRSSGEYVFYPRVAA FT PRTGAQDLEWVAASGRGTVYATTVMRVRPPAAPYNVCLVELEEGPRMMSRVEGIGPEDV FT QVGMAVRARIIRDDAGEPLVVFEPAGPSDAGIGQGRAAQ" FT misc_feature 140583..140921 FT /note="HMMPfam hit to PF01796, Domain of unknown function FT DUF35" FT CDS 140975..142132 FT /transl_table=11 FT /locus_tag="BP1784" FT /product="putative thiolase" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1016 TR:Q9I4V7 (EMBL:AE004534) (383 aa) fasta FT scores: E(): 7.5e-88, 60.31% id in 378 aa, and to FT Methanothermobacter thermautotrophicus lipid-transfer FT protein Mth793 TR:O26884 (EMBL:AE000857) (383 aa) fasta FT scores: E(): 8e-31, 32.03% id in 384 aa" FT /db_xref="GOA:Q7VXH9" FT /db_xref="InterPro:IPR002155" FT /db_xref="UniProtKB/TrEMBL:Q7VXH9" FT /protein_id="CAE42071.1" FT /translation="MIQERFPRGKTAIVACATYGIGESPGLSSLDLAVRASVQALDSVG FT LTPADVDGLFIGLPDDFVSGLSFTEYLGISPRLTDNNRTGGSSFLTHAIHAALALEAGL FT CDVALIAYGSNQRSGAGKLVSSMRPSPYEGAYKLARPVGAYALAASRYAAQYGLQKEQL FT GAVALAARQWAQKNPEAYMRAPLTMDECLASRLVCDPFSVRDCCLVTDGAAAVVMVRAD FT RARDLAARPAYLLGGAAAAWHKDITNMPDLTVTAASLSGPRAMAQAGVTPADIDVLELY FT DAFTLNTILFLEDLGFCAKGEGGAFVEDGRIAPGGALPVNTNGGGLSCVHPGMYGLFTM FT VEAAQQLAGAAGERQVAQARLALAHGNGGELSSQATLILGTEETI" FT misc_feature 140996..142108 FT /note="HMMPfam hit to PF00108, Thiolase, N-terminal domain" FT CDS 142154..142930 FT /transl_table=11 FT /gene="fabG" FT /locus_tag="BP1785" FT /product="3-oxoacyl-[acyl-carrier protein] reductase" FT /EC_number="1.1.1.100" FT /note="Similar to Escherichia coli 3-oxoacyl-[acyl-carrier FT protein] reductase FabG or B1093 SW:FABG_ECOLI (P25716) FT (244 aa) fasta scores: E(): 3.3e-24, 36.69% id in 248 aa, FT and to Thermotoga maritima 3-oxoacyl-[acyl-carrier protein] FT reductase FabG or Tm1724 SW:FABG_THEMA (Q9X248) (246 aa) FT fasta scores: E(): 2.2e-27, 41.5% id in 253 aa" FT /db_xref="GOA:Q7VXH8" FT /db_xref="HSSP:1GZ6" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VXH8" FT /protein_id="CAE42072.1" FT /translation="MQDKLLTLENRQVIVTGAGQGIGRALASAIAGLGGRVVAVDLNAD FT ALAALREALGHERCVTVAGNVADPSLAQQAVDAGVTAFGGVNGLVNNAGVTRTAMIDKM FT SISDWQQVIDVHLSGSFYFLQALGRHLLGRAKAGGDGAGAIVNISSDAGRRGTIGQINY FT GAAKAGVLGLTMCAAREWARYGIRTNTVGFGVVETPMTETIRGEKFRDTYLSQIPLGRW FT GEADEVVRPVCFLLSDADSYVTGQHLSVNGGYTIGL" FT misc_feature 142184..142750 FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT misc_feature 142601..142687 FT /note="ScanRegExp hit to PS00061, Short-chain FT dehydrogenases/reductases family signature." FT misc_feature 142811..142903 FT /note="HMMPfam hit to PF00678," FT CDS join(142927..143838,143840..144082) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1786" FT /product="putative acyl-CoA dehydrogenase (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 304. The sequence has been checked FT and believed to be correct. Similar to Mycobacterium FT tuberculosis CDC1551 acyl-CoA dehydrogenase, putative FT Mt1984 TR:AAK46256 (EMBL:AE007053) (409 aa) fasta scores: FT E(): 4e-26, 32.34% id in 405 aa, and to Sulfolobus FT solfataricus acyl-CoA dehydrogenase Acd-1 TR:Q97YZ6 FT (EMBL:AE006732) (363 aa) fasta scores: E(): 6.6e-26, 33.81% FT id in 346 aa" FT /db_xref="PSEUDO:CAE42073.1" FT misc_feature 142969..143553 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT misc_feature 143329..143367 FT /note="ScanRegExp hit to PS00072, Acyl-CoA dehydrogenases FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 143593..143655 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT variation 143839 FT /note="G in pertussis; ACCGCCCGA in parapertussis and FT ACCGCCCGG in bronchiseptica" FT CDS join(144104..144652,144652..145098) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1787" FT /product="putative acyl-CoA dehydrogenase (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 183. The frameshift occurs within FT a polymeric tract of (G)5. The sequence has been checked FT and believed to be correct. Similar to Mycobacterium FT tuberculosis CDC1551 acyl-CoA dehydrogenase, putative FT Mt3668 TR:AAK48026 (EMBL:AE007168) (317 aa) fasta scores: FT E(): 5.1e-13, 33.44% id in 311 aa, and to Pseudomonas FT aeruginosa probable acyl-CoA dehydrogenase Pa1020 TR:Q9I4V4 FT (EMBL:AE004534) (370 aa) fasta scores: E(): 4.3e-09, 33.97% FT id in 312 aa" FT /db_xref="PSEUDO:CAE42074.1" FT variation 144648..144652 FT /note="(G)5 in pertussis; (G)6 in parapertussis and FT bronchiseptica" FT misc_feature 144679..144963 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT CDS 145143..145811 FT /transl_table=11 FT /gene="pcaI" FT /locus_tag="BP1788" FT /product="3-oxoadipate CoA-transferase subunit A" FT /EC_number="2.8.3.6" FT /note="Similar to Pseudomonas putida 3-oxoadipate FT CoA-transferase subunit A PcaI SW:PCAI_PSEPU (Q01103) (231 FT aa) fasta scores: E(): 1.9e-43, 52.51% id in 219 aa, and to FT Ralstonia solanacearum probable 3-oxoadipate FT CoA-transferase subunit A protein PcaI TR:CAD15961 FT (EMBL:AL646069) (229 aa) fasta scores: E(): 4.8e-44, 52.51% FT id in 219 aa. Also similar to BP0221 (50.228% identity in FT 219 aa overlap), and to BP2401 (46.083% identity in 217 aa FT overlap)." FT /db_xref="GOA:Q7VXH7" FT /db_xref="HSSP:1K6D" FT /db_xref="InterPro:IPR004165" FT /db_xref="UniProtKB/TrEMBL:Q7VXH7" FT /protein_id="CAE42075.1" FT /translation="MLNKTCESADEAVSVVESGATILISGFGDIGLPFELLHALARTSV FT KDLTIVSNNAGTGELGLSRLFRNRQVSRLIASFPSQPDSHHYFAAYQEGLVDLELVPQG FT TLAERIRAAGAGLAGFFTPTGYGTELAQGKECRMFKGKGYVFEEALPGDFAFIKAHVAD FT AYGNFRYRRASRTFNPIMAMAARTTIAEAKQMVPVGSIDPDDVHTPGVFVDRIVEVRDE FT " FT misc_feature 145152..145802 FT /note="HMMPfam hit to PF01144, Coenzyme A transferase" FT CDS 145804..146445 FT /transl_table=11 FT /gene="pcaJ" FT /locus_tag="BP1789" FT /product="3-oxoadipate CoA-transferase subunit B" FT /EC_number="2.8.3.6" FT /note="Similar to Pseudomonas putida 3-oxoadipate FT CoA-transferase subunit B PcaJ SW:PCAJ_PSEPU (Q01104) (212 FT aa) fasta scores: E(): 8.3e-38, 52.45% id in 204 aa, and to FT Caulobacter crescentus 3-oxoadipate CoA-transferase, beta FT subunit Cc0207 TR:Q9ABM0 (EMBL:AE005695) (213 aa) fasta FT scores: E(): 8e-36, 50.96% id in 208 aa. Also similar to FT BP222 (50.472% identity in 212 aa overlap), and to BP2400 FT (46.667% identity in 210 aa overlap)." FT /db_xref="GOA:Q7VXH6" FT /db_xref="InterPro:IPR004164" FT /db_xref="UniProtKB/TrEMBL:Q7VXH6" FT /protein_id="CAE42076.1" FT /translation="MSKGWSNDEIAARIAVDLPEHAIVNLGIGLPILVANHIPEGKTIF FT FHSENGIIGLGPVPAPGQEDPDIVNAAKKHATLIAGASIVHHADSFSLIRGGRLDYSVL FT GGLQVSSGGDIANWKVPGQKGGGGVGGAMDLAVGARNVLVMMRHQDKTGASKLVKSCTF FT PLTAVSAVTRVYTELGIFECAGDAFIVRESAPGIGKDELLRKTEAALTFP" FT misc_feature 145819..146421 FT /note="HMMPfam hit to PF01144, Coenzyme A transferase" FT misc_feature 145939..145965 FT /note="ScanRegExp hit to PS01274, Coenzyme A transferases FT signature 2." FT CDS join(146480..147190,147190..147441) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1790" FT /product="putative exported protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 237. The frameshift occurs within FT a polymeric tract of (A)3. The sequence has been checked FT and believed to be correct. Similar to Rhizobium meliloti FT hypothetical protein Sma1927 TR:Q92Y30 (EMBL:AE007292) (330 FT aa) fasta scores: E(): 2.8e-39, 38.36% id in 305 aa, and to FT Agrobacterium tumefaciens strC58 Agr_l_312p TR:AAK88723 FT (EMBL:AE008213) (329 aa) fasta scores: E(): 1.4e-40, 37.22% FT id in 317 aa" FT /db_xref="PSEUDO:CAE42077.1" FT misc_feature 146480..146542 FT /note="Signal peptide predicted for BP1790 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 21 and 22" FT variation 147189..147191 FT /note="(A)3 in pertussis; (A)4 in parapertussis and FT bronchiseptica" FT CDS join(147769..147912,148962..150293) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1793" FT /product="autotransporter (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to the C-terminal regions of FT Bordetella pertussis tracheal colonization factor TcfA2 FT TR:O86135 (EMBL:AJ009785) (647 aa) fasta scores: E(): FT 5.5e-62, 56.83% id in 417 aa, and to Bordetella FT parapertussis pertactin precursor Prn SW:PERT_BORPA FT (P24328) (922 aa) fasta scores: E(): 2.5e-48, 48.95% id in FT 429 aa, and to Bordetella bronchiseptica pertactin FT precursor Prn SW:PERT_BORBR (Q03035) (911 aa) fasta scores: FT E(): 4.9e-48, 54.67% id in 364 aa" FT /db_xref="PSEUDO:CAE42078.1" FT repeat_region 147911..147941 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 147911..148962 FT CDS 148012..148962 FT /transl_table=11 FT /locus_tag="BP1792" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE42079.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 148270..148335 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 148393..148926 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(148931..148962) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(150520..151170) FT /transl_table=11 FT /gene="lexA" FT /gene_synonym="exra" FT /gene_synonym="spr" FT /gene_synonym="tsl" FT /gene_synonym="umuA" FT /locus_tag="BP1794" FT /product="LexA repressor" FT /EC_number="3.4.21.88" FT /note="Similar to Escherichia coli LexA repressor LexA or FT ExrA or Spr or Tsl or UmuA or B4043 or Z5642 or Ecs5026 FT SW:LEXA_ECOLI (P03033) (202 aa) fasta scores: E(): 5.2e-23, FT 59.13% id in 208 aa, and to Ralstonia solanacearum probable FT transcription regulation repressor transcription regulator FT protein LexA TR:CAD15006 (EMBL:AL646063) (216 aa) fasta FT scores: E(): 1e-49, 70.56% id in 214 aa" FT /db_xref="GOA:Q7VRY0" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/Swiss-Prot:Q7VRY0" FT /protein_id="CAE42080.1" FT /translation="MATKLTERQQEILDLIRQTVARTGFPPTRAEIAQALGFRSPNAAE FT DHLKALARKGAIELTAGASRGIRLKVPDSATPSAQLTHPLLAQLVLPLVGRVAAGSPIL FT ASEHVEREVGVDPGLFAQTPDYLLKVRGMSMRDAGILEGDLLAVKRAAEARNGQIVVAR FT LGDEVTVKRLQRQNGRIELLPENPDFAPIVVANTDEFALEGIAVGLIRTQPLH" FT misc_feature complement(150577..150936) FT /note="HMMPfam hit to PF00717, Peptidase family S24" FT misc_feature complement(150973..151167) FT /note="HMMPfam hit to PF01726, LexA DNA binding domain" FT CDS complement(151299..152501) FT /transl_table=11 FT /gene="tyrB" FT /gene_synonym="aspC" FT /locus_tag="BP1795" FT /product="aromatic-amino-acid aminotransferase" FT /EC_number="2.6.1.57" FT /note="Similar to Escherichia coli aromatic-amino-acid FT aminotransferase TyrB or B4054 SW:TYRB_ECOLI (P04693) (397 FT aa) fasta scores: E(): 6.9e-78, 52.51% id in 398 aa, and to FT Pseudomonas aeruginosa aspartate aminotransferase AspC or FT Pa3139 SW:AAT_PSEAE (P72173) (398 aa) fasta scores: E(): FT 2e-105, 68.76% id in 397 aa. Also similar to BP2858, FT 49.622% identity (49.622% ungapped) in 397 aa overlap." FT /db_xref="GOA:Q7VXH5" FT /db_xref="HSSP:1ART" FT /db_xref="InterPro:IPR015422" FT /db_xref="UniProtKB/TrEMBL:Q7VXH5" FT /protein_id="CAE42081.1" FT /translation="MSTLFASVELAPRDPILGLNEQYNADTRPGKVNLGVGVYYDDEGR FT IPLLQAVRKAEVARIEAAAARGYLPIEGIAGYNKGAQALLLGADSPLAAEGRVLTAQAL FT GGTGALKIGADFLRQLLPQSKVLISDPSWENHRALFERAGFPVETYAYYDAATHGLNFE FT AMLAALQAAPEQTIVVLHACCHNPTGVDPTPQQWEQIAAVVKARNLVPFLDIAYQGFGE FT GLEQDAAVVRMFAALDLTMFISSSFSKSFSLYGERVGALTVVAGSKDEAARVLSQLKRV FT IRTNYSNPPTHGGTVVSTVLNTPELFALWENELAGMRDRIRLMRKELVEKIKTQGVAQD FT FSFVLAQRGMFSYSGLTAAQVDRLREEHGIYAVSSGRICVAALNSRNIDAVAAGIAAVL FT K" FT misc_feature complement(151302..152501) FT /note="HMMPfam hit to PF00155, Aminotransferase class I and FT II" FT misc_feature complement(151725..151766) FT /note="ScanRegExp hit to PS00105, Aminotransferases class-I FT pyridoxal-phosphate attachment site. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 152579..154615 FT /transl_table=11 FT /gene="uvrB" FT /locus_tag="BP1796" FT /product="excinuclease ABC subunit B" FT /note="Similar to Escherichia coli, and excinuclease ABC FT subunit B UvrB or B0779 or Z0998 or Ecs0857 SW:UVRB_ECOLI FT (P07025) (673 aa) fasta scores: E(): 2.4e-156, 67.42% id in FT 663 aa, and to Burkholderia cepacia excinuclease ABC FT subunit B UvrB TR:AAK64610 (EMBL:AY036068) (697 aa) fasta FT scores: E(): 7.6e-190, 75.92% id in 673 aa" FT /db_xref="GOA:Q7VXH4" FT /db_xref="HSSP:1D9X" FT /db_xref="InterPro:IPR004807" FT /db_xref="UniProtKB/Swiss-Prot:Q7VXH4" FT /protein_id="CAE42082.1" FT /translation="MTAPGFVEFPDSPFHLYQPYPPAGDQPGAIDALTEGVSDGLMFQT FT LLGVTGSGKTYTMANMIARLGRPALVLAPNKTLAAQLYAEMREFFPRNAVEYFVSYYDY FT YQPEAYVPTRDLFIEKDSSINEHIEQMRLSATKSLLERRDTVIVGTVSCIYGIGNPGDY FT HAMVLILRTGDRISRREVLARLVAMQYTRNDADFTRGVFRVRCETIDIFPAESPELALR FT LTLFDDEIESLELFDPLTGRVRQKLPRFTVYPGSHYVTPRETVLRAIETIKEELRERLA FT QLIADGKLVEAQRLEQRTRFDLEMLQELGFCKGIENYSRHLSGAAPGEPPPTLIDYLPA FT DALMFIDESHVTIGQLGGMYRGDRSRKETLVQYGFRLPSALDNRPLRLEEFEARMRQCV FT FVSATPAAYEQEHADNVVEQVVRPTGLVDPIVEVRPAHTQVDDLLGEIHKRAALQERVL FT VTTLTKRMAEDLTDFLSEHGVRVRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREG FT LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGRAILYADRITDSMRRAIDET FT ERRRAKQIQHNTDHGITARGVSKAVRELIDGVVAPAGHDALESAVPAEVLTDEKAMARE FT IRRLEKLMMDHARNLEFEQAAAARDALNALKSRLLLDGVGWSG" FT misc_feature 152720..152743 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 153980..154240 FT /note="HMMPfam hit to PF00271, Helicase conserved FT C-terminal domain" FT misc_feature 154475..154582 FT /note="HMMPfam hit to PF02151, UvrB/uvrC motif" FT CDS 154868..155359 FT /transl_table=11 FT /gene="ptpA" FT /locus_tag="BP1797" FT /product="low molecular weight FT protein-tyrosine-phosphatase" FT /EC_number="3.1.3.48" FT /note="Similar to Streptomyces coelicolor low molecular FT weight protein-tyrosine-phosphatase PtpA or Scq11.04C FT SW:PTPA_STRCO (P53433) (164 aa) fasta scores: E(): 2.9e-20, FT 45.28% id in 159 aa, and to Pseudomonas aeruginosa FT phosphotyrosine protein phosphatase Pt or Pa2978 TR:Q9HZM6 FT (EMBL:AE004723) (154 aa) fasta scores: E(): 6.6e-27, 51.29% FT id in 154 aa" FT /db_xref="GOA:Q7VXH3" FT /db_xref="HSSP:1DG9" FT /db_xref="InterPro:IPR017867" FT /db_xref="UniProtKB/TrEMBL:Q7VXH3" FT /protein_id="CAE42083.1" FT /translation="MMTKVLFVCMGNICRSPSAEGVFRYLVNDAGMGDVVRVDSAGTHA FT FHIGEAPDARAQAAARKRGYDLTHCAARQVTADDFREFDLILAMDWDNLAALQQQCPKA FT YQHKLMLLMRFANEFEEATVPDPYYGGPEGFGKVLDYLEDACQGVLELVRKRATQYQAA FT " FT misc_feature 154874..155323 FT /note="HMMPfam hit to PF01451, Low molecular weight FT phosphotyrosine protein phosphatase" FT CDS 155575..156087 FT /transl_table=11 FT /locus_tag="BP1798" FT /product="putative DNA-binding protein" FT /note="Similar to Ralstonia solanacearum conserved FT hypothetical protein Rsc1018 TR:CAD14720 (EMBL:AL646062) FT (193 aa) fasta scores: E(): 9.9e-42, 70.58% id in 170 aa, FT and to Neisseria meningitidis hypothetical protein FT Nma1593/Nmb1378 precursor Nma1593 or Nmb1378 SW:YF93_NEIMA FT (Q51134) (148 aa) fasta scores: E(): 6.3e-28, 60.87% id in FT 138 aa" FT /db_xref="GOA:Q7VXH2" FT /db_xref="InterPro:IPR010242" FT /db_xref="UniProtKB/TrEMBL:Q7VXH2" FT /protein_id="CAE42084.1" FT /translation="MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQL FT FGKLRRHELVDSVRGPGGGYSLARLARNVTVADIIFAVDEPLDATSCGGKRDCTSGNDG FT KPGKCMTHELWTTLNRKMVDYLDSVSLQDLVDQQRVRQLQEAANQAQGCSAVRVNRSTP FT VAANATA" FT misc_feature 155575..155952 FT /note="HMMPfam hit to PF02082, Uncharacterized protein FT family UPF0074" FT misc_feature 155650..155715 FT /note="Predicted helix-turn-helix motif with score 1117 FT (+2.99 SD) at aa 39-60, sequence VTLAAISQRQNISLSYLEQLFG" FT CDS 156105..157316 FT /transl_table=11 FT /gene="iscS" FT /locus_tag="BP1799" FT /product="cysteine desulfurase" FT /EC_number="4.4.1.-" FT /note="Similar to Escherichia coli cysteine desulfurase FT IscS or B2530 SW:ISCS_ECOLI (P39171) (404 aa) fasta scores: FT E(): 7.6e-117, 74.56% id in 401 aa, and to Azotobacter FT vinelandii cysteine desulfurase IscS SW:ISCS_AZOVI (O31269) FT (403 aa) fasta scores: E(): 9.4e-112, 72.81% id in 401 aa" FT /db_xref="GOA:Q7VXH1" FT /db_xref="HSSP:1EG5" FT /db_xref="InterPro:IPR015421" FT /db_xref="UniProtKB/TrEMBL:Q7VXH1" FT /protein_id="CAE42085.1" FT /translation="MSNRPIYLDYSATTPVDPSVVEKMIPWLYESFGNPASRSHAFGWE FT AEDAVEKAREEVAKLVNADPREIVWTSGATESDNLAIKGAANFYAERGKHIITVKTEHK FT AVLDTCRELERQGFEVTYLDVQDDGLLSLDAFKAALRPDTILVSVMMVNNEIGVIQDIA FT ALGEICREKGIIFHVDAAQATGKVEIDLQKLKVDLMSFSAHKTYGPKGIGALYVRRKPR FT VRIEAQMHGGGHERGFRSGTLATHQIVGMGEAFRLAREEMGTENERVRMLRDRLLAGLT FT QIEEVYVNGSMEHRVPHNLNISFNYVEGESLIMAIKELAVSSGSACTSASLEPSYVLRA FT LGRNDELAHSSIRFTLGRFTTEQEIDFTIELIKSRVGKLRDMSPLWEMAQEGIDLNSVQ FT WAAH" FT misc_feature 156150..157208 FT /note="HMMPfam hit to PF00266, Aminotransferase class-V" FT misc_feature 156690..156749 FT /note="ScanRegExp hit to PS00595, Aminotransferases class-V FT pyridoxal-phosphate attachment site." FT CDS 157354..157764 FT /transl_table=11 FT /gene="iscU" FT /gene_synonym="nifU" FT /locus_tag="BP1800" FT /product="[Fe-S] cluster formation/repair protein" FT /note="Similar to Azotobacter vinelandii IscU TR:O31270 FT (EMBL:AF010139) (128 aa) fasta scores: E(): 1.3e-40, 81.74% FT id in 126 aa, and to Escherichia coli, and NifU-like FT protein NifU or B2529 or Z3796 or ecs3395 SW:NIFU_ECOLI FT (P77310) (128 aa) fasta scores: E(): 7.7e-42, 82.81% id in FT 128 aa" FT /db_xref="GOA:Q7VXH0" FT /db_xref="HSSP:1Q48" FT /db_xref="InterPro:IPR002871" FT /db_xref="UniProtKB/TrEMBL:Q7VXH0" FT /protein_id="CAE42086.1" FT /translation="MAYSSKVLDHYENPRNVGSFDKGDDSVGTGMVGAPACGDVMKLQI FT KVNEAGVIEDARFKTYGCGSAIASSSLVTEWVKGKTLDEAMNIRNTQIAEELALPPVKI FT HCSILAEDAIKAAVQDYKTKHGAETPEAVAAN" FT misc_feature 157357..157737 FT /note="HMMPfam hit to PF01592, NifU-like N terminal domain" FT CDS 157766..158089 FT /transl_table=11 FT /gene="iscA" FT /locus_tag="BP1801" FT /product="[Fe-S] cluster formation/repair protein" FT /note="Similar to Azotobacter vinelandii IscA TR:O31271 FT (EMBL:AF010139) (107 aa) fasta scores: E(): 1.5e-28, 68.22% FT id in 107 aa, and to Pseudomonas aeruginosa probable FT iron-binding protein isca isca or pa3812 TR:Q9HXJ0 FT (EMBL:AE004799) (107 aa) fasta scores: E(): 1.5e-29, 71.02% FT id in 107 aa. Also similar to BP2958, 39.623% identity FT (40.000% ungapped) in 106 aa overlap." FT /db_xref="GOA:Q7VXG9" FT /db_xref="HSSP:1R94" FT /db_xref="InterPro:IPR011302" FT /db_xref="UniProtKB/TrEMBL:Q7VXG9" FT /protein_id="CAE42087.1" FT /translation="MAVTLTQSAANHVGRYLQKRGKGIGLRLGVRTTGCSGMAYKLEYV FT DEQAADDVVFDSFGVKVFIDPKSLAYLDGTELDYAREGLNEGFRFSNPNEKATCGCGES FT FTV" FT misc_feature 157769..158083 FT /note="HMMPfam hit to PF01521, HesB-like domain" FT misc_feature 158027..158080 FT /note="ScanRegExp hit to PS01152, Hypothetical FT hesB/yadR/yfhF family signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 158092..158604 FT /transl_table=11 FT /gene="hscB" FT /locus_tag="BP1802" FT /product="chaperone protein" FT /note="Similar to Escherichia coli chaperone protein HscB FT or B2527 or Z3794 or Ecs3393 SW:HSCB_ECOLI (P36540) (171 FT aa) fasta scores: E(): 4.6e-14, 36.3% id in 157 aa, and to FT Neisseria meningitidis chaperone protein HscB Nmb1383 FT TR:Q9JYX6 (EMBL:AE002486) (166 aa) fasta scores: E(): FT 2.3e-17, 41.31% id in 167 aa" FT /db_xref="GOA:Q7VXG8" FT /db_xref="HSSP:1FPO" FT /db_xref="InterPro:IPR015609" FT /db_xref="UniProtKB/Swiss-Prot:Q7VXG8" FT /protein_id="CAE42088.1" FT /translation="MAADDHFSLFGLPTRFALDPVQLEQAWRAVAARVHPDRYATASAA FT ERRVAMQWAARANEAYRQLRDPMLRARYLCEQAGVDLQTESNTAMDPAFLMQQMEWREM FT LDDARRDPAAFAALRAELEQARLRMQQTLSELIDERGDYQQAGTKVREWMFVEKLAQEL FT SAAQPMQ" FT misc_feature 158104..158322 FT /note="HMMPfam hit to PF00226, DnaJ domain" FT CDS 158734..160596 FT /transl_table=11 FT /gene="hscA" FT /gene_synonym="hsc" FT /locus_tag="BP1803" FT /product="chaperone protein" FT /note="Similar to Escherichia coli chaperone protein HscA FT or Hsc or B2526 or Z3793 or Ecs3392 SW:HSCA_ECOLI (P36541) FT (616 aa) fasta scores: E(): 2.3e-119, 60.06% id in 626 aa, FT and to Ralstonia solanacearum probable chaperone protein FT HscA TR:CAD14726 (EMBL:AL646062) (621 aa) fasta scores: FT E(): 1.1e-145, 69.35% id in 620 aa." FT /db_xref="GOA:Q7VXG7" FT /db_xref="HSSP:1DKG" FT /db_xref="InterPro:IPR010236" FT /db_xref="UniProtKB/Swiss-Prot:Q7VXG7" FT /protein_id="CAE42089.1" FT /translation="MALLQISEPGDSPAPHQRKLAVGIDLGTTNSLVAAVRSSVPEVLA FT DAQGQVLLPSAVRYLDGGAVRIGREALLEQARDPLNTIVSVKRFMGRSAADAAASGAPY FT EFVDAPGMVRLRTVQGDLSPVEVSAQILAVLRQRAEDVLGDDLVGAVITVPAYFDDAQR FT QATRDAARLAGLNVLRLLNEPTAAAIAYGLDQAAEGIYAVYDLGGGTFDISILRLTQGV FT FEVIATGGDTALGGDDFDSAIVAHACAGEDVAALPVADRRALLVAARAAREALTDQAQA FT PFEVTLRDGRAIQATLTRAQFEQLAEPLVGRTLDSARRALRDAGLAVGDVRGVVMVGGA FT TRMPVVRQQVGALFGTEPLTNLDPDQVVALGAALQANLLAGNRALGEDWLLLDVIPLSL FT GLETMGGLVERIIPRNSTIPVARAQEFTTFKDGQTAMSVHVVQGERDLVSDCRSLARFE FT LRGIPPMVAGAARIRVTFQVDADGLLSVTAREQSTGVEAAVAVKPSYGLSDDEIARMLA FT DSVTQADSDARARMLREQQVEARQLVESVGAALAADGDLLDPAERATVDQRLQAAAQAQ FT SLDDVEAVRAAVQALSDATEEFAARRMDRSIRSALAGRKLDELA" FT misc_feature 158794..160545 FT /note="HMMPfam hit to PF00012, Hsp70 protein" FT misc_feature 158803..158826 FT /note="ScanRegExp hit to PS00297, Heat shock hsp70 proteins FT family signature 1. Confirmed by InterPro eMOTIF pattern FT match." FT misc_feature 159340..159381 FT /note="ScanRegExp hit to PS00329, Heat shock hsp70 proteins FT family signature 2. Confirmed by InterPro eMOTIF pattern FT match." FT misc_feature 159733..159777 FT /note="ScanRegExp hit to PS01036, Heat shock hsp70 proteins FT family signature 3. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 160606..160947 FT /transl_table=11 FT /gene="fdx" FT /locus_tag="BP1804" FT /product="ferredoxin, 2Fe-2S" FT /note="Similar to Escherichia coli ferredoxin, 2Fe-2S Fdx FT or B2525 or Z3792 or Ecs3391 TR:AAG57639 (EMBL:M88654) (111 FT aa) fasta scores: E(): 1.5e-28, 62.5% id in 112 aa, and to FT Neisseria meningitidis putative ferredoxin Fdx or Nma1344 FT or Nmb1172 TR:Q9JQT7 (EMBL:AL162755) (113 aa) fasta scores: FT E(): 7.3e-33, 67.25% id in 113 aa. Also similar to BP3174, FT 63.964% identity (64.545% ungapped) in 111 aa overlap." FT /db_xref="GOA:Q7VXG6" FT /db_xref="HSSP:1I7H" FT /db_xref="InterPro:IPR018298" FT /db_xref="UniProtKB/TrEMBL:Q7VXG6" FT /protein_id="CAE42090.1" FT /translation="MPKLTVLPHPDVCPEGAVIEDAPKGVSICRVMLDNHIEIEHACEL FT SCACTTCHVVVRQGFNSLEDATDDEEDLLDKAWGLTSTSRLSCQALIGEEDLTVEIPKY FT TINHAKEQH" FT misc_feature 160627..160887 FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain" FT misc_feature 160732..160764 FT /note="ScanRegExp hit to PS00814, Adrenodoxin family, FT iron-sulfur binding region signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 160750..160767 FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT CDS 160947..161141 FT /transl_table=11 FT /locus_tag="BP1805" FT /product="conserved hypothetical protein" FT /note="Similar to Azotobacter vinelandii hypothetical 7.9 FT kDa protein TR:O69223 (EMBL:AF010139) (68 aa) fasta scores: FT E(): 1.3e-14, 62.5% id in 64 aa, and to Neisseria FT meningitidis hypothetical protein Nma1347 or Nmb1175 FT TR:Q9JR02 (EMBL:AL162755) (65 aa) fasta scores: E(): FT 9.5e-14, 60% id in 65 aa" FT /db_xref="GOA:Q7VXG5" FT /db_xref="InterPro:IPR007479" FT /db_xref="UniProtKB/TrEMBL:Q7VXG5" FT /protein_id="CAE42091.1" FT /translation="MKWTDIYEIAAALADTHPDADPQTVRFTQLREWVLGLPGFADDPA FT HCGEKILEAIQMAWIEEMD" FT CDS 161266..162159 FT /transl_table=11 FT /locus_tag="BP1806" FT /product="hypothetical protein" FT /note="The C-terminal region of this CDS is similar to FT Brucella abortus methylglyoxal synthase MgsA SW:MGSA_BRUAB FT (Q44615) (125 aa) fasta scores: E(): 3.6e-10, 41.12% id in FT 124 aa, and to Rhizobium meliloti probable methylglyoxal FT synthase protein TR:CAC41545 (EMBL:AL591782) (126 aa) fasta FT scores: E(): 1.1e-07, 40.95% id in 105 aa" FT /db_xref="GOA:Q7VXG4" FT /db_xref="HSSP:1B93" FT /db_xref="InterPro:IPR018148" FT /db_xref="UniProtKB/TrEMBL:Q7VXG4" FT /protein_id="CAE42092.1" FT /translation="MTTASLRFGLAANRLHHETPDAALFTWLRACSATIREMGIQLHTV FT GRTHDAIVREGMLQGYSGLVRYPYGREGGLMKLVARVTEGRDGDAPFDGAIYLIDPVDP FT SSIFPEALALKRQCITHGRPFISTLAGAIEWIEVERVLAGLAPDATAARLFDFTGQTLA FT LISHDALKEDMVAFAAEHFDLLSQFARRVATGTTGGLLNDLAWSRGWPKDRPWVHRYLS FT GPLGGDAQIAELVLEHQCQRVIFFEDPHVARQHEADIQLLERAVRVVTASATCATSPSV FT ARRWAQAVQRRQAGRA" FT misc_feature 161929..161955 FT /note="ScanRegExp hit to PS01335, Methylglyoxal synthase FT active site. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(162156..163106) FT /transl_table=11 FT /locus_tag="BP1807" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q84CT8" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q84CT8" FT /protein_id="CAE42093.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT repeat_region 162156..162187 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(162156..163208) FT misc_feature complement(162192..162725) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(162783..162848) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(163177..163208) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(163231..164040) FT /transl_table=11 FT /gene="paaG" FT /locus_tag="BP1808" FT /product="probable enoyl-CoA hydratase" FT /EC_number="4.2.1.17" FT /note="Similar to Escherichia coli probable enoyl-CoA FT hydratase PaaG or B1394 SW:PAAG_ECOLI (P77467) (262 aa) FT fasta scores: E(): 2.3e-24, 38.79% id in 250 aa, and to FT Rhizobium meliloti putative enoyl-CoA hydratase protein FT TR:Q92TG7 (EMBL:AL603647) (263 aa) fasta scores: E(): FT 7.3e-25, 37.73% id in 265 aa" FT /db_xref="GOA:Q7VXG3" FT /db_xref="InterPro:IPR018376" FT /db_xref="UniProtKB/TrEMBL:Q7VXG3" FT /protein_id="CAE42094.1" FT /translation="MSAADQPPRYGTLTLQTDGALAILTLDRPAALNAIDIAMARDLQA FT AARWLQDRAALRVVLLRGAGKAFCAGGDIALFQGPPEEIRASLRALFTPLNDCVARIAA FT MDQLWLADVHGVAAGAGLSLALACDLAIAADDARLVTAYLKLGATPDAGMTHALAHLLG FT RRRALALLLRAEPIDAAQALQWGLVDRVAPAAERADQALAYARELAAHAPHDVAAAKRL FT LRQAPATSLEQQLEDEAAAFLAAAGRADFAEGVQAFLAKRPPRFTGA" FT misc_feature complement(163462..163977) FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT misc_feature complement(163651..163713) FT /note="ScanRegExp hit to PS00166, Enoyl-CoA FT hydratase/isomerase signature." FT repeat_region 164139..164170 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 164139..165191 FT CDS 164241..165191 FT /transl_table=11 FT /locus_tag="BP1809" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE42095.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 164499..164564 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 164622..165155 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(165160..165191) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 165188..165219 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 165188..166240 FT CDS 165290..166240 FT /transl_table=11 FT /locus_tag="BP1810" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTJ9" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTJ9" FT /protein_id="CAE42096.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVSEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS" FT misc_feature 165548..165613 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 165671..166204 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(166213..166240) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS join(166490..167056,167058..167513) FT /pseudo FT /transl_table=11 FT /gene="kdgT" FT /locus_tag="BP1811" FT /product="2-keto-3-deoxygluconate permease (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 189. The frameshift occurs within FT a tract of (T)2. The sequence has been checked and believed FT to be correct. Similar to Erwinia chrysanthemi FT 2-keto-3-deoxygluconate permease KdgT SW:KDGT_ERWCH FT (P15701) (339 aa) fasta scores: E(): 1.4e-32, 34.24% id in FT 330 aa, and to Erwinia carotovora 2-keto-3-deoxygluconate FT permease KdgT SW:KDGT_ERWCA (Q9XB52) (318 aa) fasta scores: FT E(): 1.3e-35, 37.78% id in 307 aa" FT /db_xref="PSEUDO:CAE42097.1" FT variation 167055..167056 FT /note="(T)2 in pertussis; (T)1 in parapertussis and FT bronchiseptica" FT CDS 167514..168731 FT /transl_table=11 FT /locus_tag="BP1812" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Smb20670 TR:CAC49777 (EMBL:AL603646) (425 aa) fasta scores: FT E(): 4.8e-08, 30.02% id in 433 aa, and to Escherichia coli FT hypothetical protein YgbK or B2737 SW:YGBK_ECOLI (Q46889) FT (388 aa) fasta scores: E(): 2.1e-07, 28.98% id in 383 aa" FT /db_xref="InterPro:IPR010737" FT /db_xref="UniProtKB/TrEMBL:Q7VXG2" FT /protein_id="CAE42098.1" FT /translation="MGGPYIGIVADDLTGSGDTAVQFVRAGWATQLSVGGAEQALADPA FT VRQAEVLAVTTHSRPLAAADAAAVVRGEVERLRAAGVQRLYKKVDSTLRGAFKAEIDAA FT RLAWGEGAIAVVCPAFPVTGRTVRQGVLYVSDRPVTETSAATDPVTPVTESHIPTLLGC FT AQLAAQAGETPAELARRIAAAAPVVVVDALDDADVQRLARAIGVLGQRAVPVGSGGLAA FT PLAWVWAGGQAAGPVLVVVTSQHSAARQQAAALQQAGARTWAPTLAQLADDRNWAAWTA FT EVEAAEHGMPAVDALMLLAPEGRLAGLDADSVARRLGELAARLVLAHGAAGVVATGGDG FT ASAVLAALQASGIALVDEVTGGVPLGTLTGGQAAGLPVVTKAGGFGEQDVLIRAAQAIR FT ERRFTK" FT CDS 168728..169783 FT /transl_table=11 FT /gene="pdxA" FT /locus_tag="BP1813" FT /product="putative pyridoxal phosphate biosynthetic FT protein" FT /note="Similar to Escherichia coli pyridoxal phosphate FT biosynthetic protein PdxA or B0052 SW:PDXA_ECOLI (P19624) FT (329 aa) fasta scores: E(): 1.2e-18, 31.7% id in 287 aa, FT and to Caulobacter crescentus pyridoxal phosphate FT biosynthetic protein PdxA Cc1686 TR:Q9A7N4 (EMBL:AE005843) FT (333 aa) fasta scores: E(): 1.1e-26, 36.33% id in 333 aa. FT Also similar to BP2789, 46.233% identity (49.451% ungapped) FT in 292 aa overlap." FT /db_xref="GOA:Q7VXG1" FT /db_xref="HSSP:1PTM" FT /db_xref="InterPro:IPR005255" FT /db_xref="UniProtKB/TrEMBL:Q7VXG1" FT /protein_id="CAE42099.1" FT /translation="MTQDATPSRIPTLAVTLGDVAGIGPEITAKMLLGHDELRQRARLL FT VVGDAAVLAQAVQAVGGDPARVRVIATPAEATNQPGSIEVIQAGPSLAHVPPGQLSAEA FT GDGSVRYVTTACALARDGLIDGIVTAPLNKAAMHMAGHKWPGHTELLAHEFGVKTFSLV FT LSAGDLYIFHATTHVSLRQAIEDVNPQRMRAVLRLAGSFARALGRADHPVAVAGLNPHA FT GENGIFGTEDAEILAPAVTQANNAEGILAAGPIPADALFPQAVRGKWKFVIACYHDQGY FT APFKSVYGDDGVNITVACRWCACRSTTAPRSTSPARASREDSLVLAAERAAQLAPGWHQ FT VWETARSTTGG" FT CDS 169788..170690 FT /transl_table=11 FT /locus_tag="BP1814" FT /product="probable GntR-family transcriptional regulator" FT /note="Similar to Rhizobium meliloti putative transcription FT regulator protein Smc02340 TR:CAC47147 (EMBL:AL591791) (244 FT aa) fasta scores: E(): 3.8e-18, 33.47% id in 239 aa, and to FT Deinococcus radiodurans transcriptional regulator, GntR FT family Dra0211 TR:Q9RYU6 (EMBL:AE001863) (279 aa) fasta FT scores: E(): 3.8e-17, 37.7% id in 244 aa" FT /db_xref="GOA:Q7VXG0" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VXG0" FT /protein_id="CAE42100.1" FT /translation="MALSAIEPFALDRSGATPLHAQVADAIRNHIRDHRLTAGTVLPSE FT AALCHSFGVARSVVRQALGALVAEGLIRRDPGRAPVVAPPREHRRMVQRSAGLYEQFAG FT LGVALRTRVLACRPAEPPPEVAAFFGTTETLLLERLRSVDAQPLAYVRTWLPRAAIAGL FT AADHLQDASLHRVLAQRFGLRPGRGRNRIRAVAAEAALAQALDVAPGSPLLMLEGQGLD FT QDGHPLEWFTTWHRPENLVFDVDVGQERESVQPALTCGTAAVAPPAVAAPPSGALDAVE FT QSLLQALQAVRRAREDQQE" FT misc_feature 169854..170033 FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT CDS 170767..171639 FT /transl_table=11 FT /locus_tag="BP1815" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Smc02631 TR:CAC45671 (EMBL:AL591786) (283 aa) fasta scores: FT E(): 1e-13, 36.45% id in 288 aa, and to Streptomyces FT coelicolor conserved hypothetical protein 2 Scd46.31C FT TR:Q9FCF3 (EMBL:AL391406) (294 aa) fasta scores: E(): FT 4.9e-13, 34.89% id in 298 aa" FT /db_xref="GOA:Q7VXF9" FT /db_xref="InterPro:IPR005303" FT /db_xref="UniProtKB/TrEMBL:Q7VXF9" FT /protein_id="CAE42101.1" FT /translation="MSTRIRSLHIYPVKSCAGIDLAESIVDRAGLAHDRRWMVTTAAGQ FT FMTQRQYPQMARIRTALEDGMLVLRAPGMEDLRIPADGSELAERTQPVGVWRDTVIARA FT EHPRSAEWLSRFLGLPCRLLKIDLRADRTANPEWVDTWLERHPEWAEDFAGDHFFGFAD FT GFPLLVANQSSLDELNERLAARGQAPVPMNRFRANIVVEGDWPAFEEDQTACIVAGGVR FT MAFVKPCTRCPMSNVDQVTAEVYDELGLTLTTFRSLEIGVVFGQNAIVDRTAPAPLRVG FT DAVEIELDF" FT CDS 171770..172138 FT /transl_table=11 FT /gene="panD" FT /locus_tag="BP1816" FT /product="aspartate 1-decarboxylase precursor" FT /EC_number="4.1.1.11" FT /note="Similar to Escherichia coli aspartate FT 1-decarboxylase precursor PanD or B0131 or Z0142 or Ecs0135 FT SW:PAND_ECOLI (P31664) (126 aa) fasta scores: E(): 1.2e-21, FT 54.62% id in 119 aa, and to Alcaligenes eutrophus aspartate FT 1-decarboxylase precursor PanD SW:PAND_ALCEU (Q9ZHI5) (120 FT aa) fasta scores: E(): 2e-36, 77.5% id in 120 aa" FT /db_xref="GOA:Q7VXF8" FT /db_xref="HSSP:1PYU" FT /db_xref="InterPro:IPR003190" FT /db_xref="UniProtKB/Swiss-Prot:Q7VXF8" FT /protein_id="CAE42102.1" FT /translation="MQRIMLRAKLHRVTVTEADLHYEGSCGIDEDLLDAAGMREFERIE FT LYNVTNGERFDTYIIKAARGSGAISLNGAAARRAQVGDLLIICTYGPMSEEQSAAHKPQ FT VVLVDDANRVKEIRKFPA" FT misc_feature 171770..172117 FT /note="HMMPfam hit to PF02261, Aspartate decarboxylase" FT CDS 172196..173242 FT /transl_table=11 FT /gene="ascD" FT /gene_synonym="rfbI" FT /locus_tag="BP1817" FT /product="CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehy FT drase reductase" FT /EC_number="1.17.1.-" FT /note="Similar to Yersinia pestis and Y. pseudotuberculosis FT CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase FT reductase AscD or RfbI or Ypo3116 SW:ASCD_YERPE (P37911) FT (328 aa) fasta scores: E(): 1.1e-37, 42.85% id in 336 aa, FT and to Ralstonia solanacearum putative reductase FT oxidoreductase protein Rsc2434 TR:CAD16141 (EMBL:AL646070) FT (349 aa) fasta scores: E(): 2.8e-86, 61.2% id in 348 aa" FT /db_xref="GOA:Q7VXF7" FT /db_xref="HSSP:1CZP" FT /db_xref="InterPro:IPR001221" FT /db_xref="UniProtKB/TrEMBL:Q7VXF7" FT /protein_id="CAE42103.1" FT /translation="MSFQVTIEPSKHQFQAEAGQTVLDAALAAGIVLPYSCRTGACSTC FT KGKVVAGEVDAGPYPAQILSPEDLAQGYTLFCQAKPQSDLVVESTEVRLASDIQIRKLP FT SRVQTIERVAPDVAVLKLQLPASEQFRYYAGQYIEVILKDGKRRSYSMAGAPHTGSPLE FT LHIRHMPGGLFTDHVFGAGDTQMKEREILRLEGPFGSFFLREDSDKPIVLLASGTGFAP FT VKAIVEHMIHNQIQRPVVLYWGGRRPRDLYHDALAQSWAGRLPGFRYVPVVSDALDEDG FT WSGRTGYVHEAVMQDLPDLSGYEVYACGTPLMVDAARREFSAQCGLPAEAFYADAFTSE FT ADLAKATP" FT misc_feature 172208..172444 FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain" FT misc_feature 172304..172330 FT /note="ScanRegExp hit to PS00197, 2Fe-2S ferredoxins, FT iron-sulfur binding region signature." FT misc_feature 172817..173155 FT /note="HMMPfam hit to PF00175, Oxidoreductase NAD-binding FT domain" FT CDS 173438..174694 FT /transl_table=11 FT /gene="dadA" FT /gene_synonym="dadR" FT /locus_tag="BP1818" FT /product="D-amino acid dehydrogenase small subunit" FT /EC_number="1.4.99.1" FT /note="Similar to Escherichia coli D-amino acid FT dehydrogenase small subunit DadA or DadR or B1189 or Z1952 FT or Ecs1684 SW:DADA_ECOLI (P29011) (432 aa) fasta scores: FT E(): 4.2e-68, 45.14% id in 412 aa, and to Salmonella FT typhimurium LT2 D-amino acid dehydrogenase subunit DadA FT TR:AAL20718 (EMBL:AE008780) (432 aa) fasta scores: E(): FT 3.7e-68, 44.63% id in 410 aa. Also similar to BP2634, FT 42.079% identity in 404 aa overlap" FT /db_xref="GOA:Q7VXF6" FT /db_xref="InterPro:IPR006076" FT /db_xref="UniProtKB/TrEMBL:Q7VXF6" FT /protein_id="CAE42104.1" FT /translation="MKVAVLGSGIIGVSSAWWLSQAGHDVVVVDRCTGAAQETSLANGA FT QISVSYAEPWANPQAPFKLLKWMFQDDAPLLFRPQLDWRQWQWGLAFLRECLPSRLAPN FT IRAMVRMAEYSRATLQGMRAELGIQYDHLERGILNFYRDQREFETSQRAAGLMRDFGVE FT RRVINADEVVAIEPALAPHLQTIVGGDYTPEDESGDVHLFTAALARRCEAAGVEFRFST FT RVTRLLGEGGRVQGVELIEPDGRYGRLDADAFVVAMGSFSAQLVRPLGVPCMVYPAKGY FT SATFPVRPGALAPVVSLTDSSHKVVFSRLGERLRMAGTAELSGYSRGLNTGRCEAMTRL FT ARELFPDALDFERVSYWSGLRPSTPSNVPLIGRTSVSNLYLNTGHGTLGWTMGVGSGRA FT LADLLSGRRPEPEFPFLGL" FT CDS 174714..176036 FT /transl_table=11 FT /gene="ugpB" FT /locus_tag="BP1819" FT /product="glycerol-3-phosphate-binding periplasmic protein FT precursor" FT /note="Similar to Escherichia coli FT glycerol-3-phosphate-binding periplasmic protein precursor FT UgpB or B3453 or Z4822 or Ecs4299 SW:UGPB_ECOLI (P10904) FT (438 aa) fasta scores: E(): 5.3e-42, 30.76% id in 429 aa, FT and to Yersinia pestis glycerol-3-phosphate-binding FT periplasmic protein UgpB TR:CAC93263 (EMBL:AJ414159) (439 FT aa) fasta scores: E(): 1.7e-43, 32.54% id in 424 aa" FT /db_xref="GOA:Q7VXF5" FT /db_xref="InterPro:IPR006059" FT /db_xref="UniProtKB/TrEMBL:Q7VXF5" FT /protein_id="CAE42105.1" FT /translation="MTGFARAMRASRRACVLGLAMAAMGVAQAADSVEIQVWHTLSGPN FT KAEFEKLAKQFNKEQGDVVVKLRDFGNQDDLKKEAVSAVKSKKGPNLVQLADNHSPEVV FT AEHKSILPLHQLLAKYPVKDLNWFLPSTTSFTRDGKGRLLAFPWMAEVPVMFYNTAYYK FT KAGLDPNKPARTWADLQAELLKLRDVANIDCPYATSDQVTVHLENLAPVNNQLYATLNN FT GLDVAKKGSPSMQFDTLYMRHVSLMVSWKRSLLLTAYSDDNKSDQLFAKGECAVLTTSS FT SALGQFLNTRSLSFGVAPLPYYDQVTKTGGRPFVSGSALWAMEGHPQAEEKATAKFLAW FT LSKPVIAAEWHQRTGYLPLTEAAFRASDVSFYNKVPGAQQLVELMRNPPAATSRGFRIA FT NYERIEPVLNTQLTAAFDGKTPPVAALNNAASQARSLAAQR" FT misc_feature 174714..174800 FT /note="Signal peptide predicted for BP1819 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 29 and 30" FT misc_feature 175131..176018 FT /note="HMMPfam hit to PF01547, Bacterial extracellular FT solute-binding protein" FT CDS complement(176186..177142) FT /transl_table=11 FT /locus_tag="BP1820" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa1998 TR:Q9I2B1 (EMBL:AE004626) FT (306 aa) fasta scores: E(): 4.7e-30, 36.3% id in 314 aa, FT and to Rhizobium loti transcriptional regulator Mlr6981 FT TR:Q987N6 (EMBL:AP003010) (299 aa) fasta scores: E(): FT 1.1e-28, 36.23% id in 287 aa" FT /db_xref="GOA:Q7VXF4" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VXF4" FT /protein_id="CAE42106.1" FT /translation="MRPQADLSTRQLRAFVMLADLRHFTKAAQACHLSQPAFSALIQSL FT EATLAMQLFDRSTRRVVLTQEGELFEPLARRLLADLGHAMTHIASFVELRRGRVHVAAL FT PSLAAGWLPKVLHEFHAEHPDIELMLSDVLSDECIELVRSGQADFALASRGIRASDPAV FT LHARELCSDTFHLICRKDHPLAREPRLTLKHLAPWPFIHLTRNSSVRQTVEAALRPQVA FT KTILEVAQLATVAGMIEAGLGISVVPTFTLYQFERPGLLIRPISLPGLTRQIYIVRRQE FT ERLSIAAQALYDLVVAKLGTPAASPARPRRRRTEKRD" FT misc_feature complement(176690..177118) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(176984..177076) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT misc_feature complement(177014..177079) FT /note="Predicted helix-turn-helix motif with score 1613 FT (+4.68 SD) at aa 30-51, sequence RHFTKAAQACHLSQPAFSALIQ" FT CDS join(177239..178276,178275..178613) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1821" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 346 (The frameshift occurs within FT a polymeric tract of (GC)5), and a stop codon at position FT 459. The sequence has been checked and believed to be FT correct. Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2886 TR:Q9HZW1 (EMBL:AE004714) (600 aa) fasta FT scores: E(): 4.7e-32, 31.58% id in 611 aa, and to FT Streptomyces coelicolor conserved hypothetical protein FT Scd10.11 TR:Q9K3W5 (EMBL:AL359988) (558 aa) fasta scores: FT E(): 2.1e-23, 31.84% id in 603 aa" FT /db_xref="PSEUDO:CAE42107.1" FT misc_feature 177986..178009 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT variation 178268..178277 FT /note="(GC)5 in pertussis; (GC)6 in parapertussis and FT bronchiseptica" FT variation 178404..178406 FT /note="GAG in pertussis; TAG stop in parapertussis" FT variation 178611..178613 FT /note="Stop codon in pertussis, parapertussis and FT bronchiseptica. According to Fasta hits there is no stop FT codon but a frameshift" FT CDS 178615..178965 FT /transl_table=11 FT /locus_tag="BP1822" FT /product="hypothetical protein" FT /note="No significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VXF3" FT /protein_id="CAE42108.1" FT /translation="MLVPLFRVAHARTGDKGDRSNISVIARDRALYPLLVEQLTPEVVL FT AQFAHRRPAGAQRYLLPKLGAMNFVLDAVLDGGVNGALNLDAHGKALSYLILKTEIAVP FT SDLVCRLAGSPG" FT CDS 179013..180587 FT /transl_table=11 FT /locus_tag="BP1823" FT /product="probable extracellular solute-binding protein" FT /note="Similar to Rhizobium sp probable peptide ABC FT transporter periplasmic binding protein Y4tO precursor y4tO FT SW:Y4TO_RHISN (P55669) (531 aa) fasta scores: E(): 2e-70, FT 39.92% id in 521 aa, and to Bradyrhizobium japonicum FT putative ABC transporter TR:Q9RH65 (EMBL:AF065159) (516 aa) FT fasta scores: E(): 1.5e-64, 38.35% id in 524 aa" FT /db_xref="GOA:Q7VXF2" FT /db_xref="InterPro:IPR000914" FT /db_xref="UniProtKB/TrEMBL:Q7VXF2" FT /protein_id="CAE42109.1" FT /translation="MRYLKSTYAAVLLAIGTAVPHATTLAQEVKVAAEAPLRLLDPVGT FT TAYITRNHAYMVYDTLFALDAQLKPQPQMVSTWSVSPDKLVYRFTLRDGLKFHDGSPVT FT AADCVASIKRWAQRDLTGLRMMAAAKEITAKDDKTFEIVLEQPFGAVIEGLSKASSLPA FT FIMPKRIADAPASQAITEVIGSGPFRFVASEYRPGLQVVYERNTDYVPRSEPPSGLAGG FT KVVNVDRVVWLSLPDIQTEANALAKGEVDYVQTVYPDVVQTLEASKDVVIQKLASTTTP FT TLRLNWLQPPFNNQKVRQALLHAVSQRDYMDAQVGDPKAYRVCWAMFGCDSPLASTAGV FT VSQDDEADLNAAKALLKESGYKNEKAVVLHATDYPPTSAISPFTAQILRSIGMKAEVQS FT MDWATFLTRRGKQDPVEKGGWSVAYGSWNTLDLMSPIANLNLDGRGKEGYAGWTESAEM FT ESLRTQYAQATEPASRQQIAAKIQQLAYDQVFYIPLGTYSNYAARRSNVTPLLDAPVTV FT FWGISKN" FT misc_feature 179013..179090 FT /note="Signal peptide predicted for BP1823 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.782 between residues 26 and 27" FT misc_feature 179178..179951 FT /note="HMMPfam hit to PF00496, Bacterial extracellular FT solute-binding proteins, family 5" FT CDS 180640..181584 FT /transl_table=11 FT /locus_tag="BP1824" FT /product="probable inner membrane component of FT binding-protein-dependent transport system" FT /note="Similar to Rhizobium sp probable peptide ABC FT transporter permease protein Y4tP SW:Y4TP_RHISN (Q53191) FT (313 aa) fasta scores: E(): 7e-57, 48.89% id in 317 aa, and FT to Rhizobium loti ABC transporter, permease protein Mlr6289 FT TR:Q989T3 (EMBL:AP003008) (314 aa) fasta scores: E(): FT 9.3e-54, 45.36% id in 313 aa" FT /db_xref="GOA:Q7VXF1" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7VXF1" FT /protein_id="CAE42110.1" FT /translation="MQILRLLFLRLASAIPVVLVVVTVVFLLVRLTGDPATILAGDMAS FT PEVVASVRADLGLDRPLLGQYAQWLWDLLQGNLGTSIVTKQPVATLIGERLESTLVLSL FT SALVVTVLLAVPLGVLAAWRHNTLVDRVVMIYAVIGFSLPSFVVGYLLILMFSVWLGWL FT PVQGYVSITDDIWLAAQHLVLPTLALAIFYMSLISRVTRASVLEVLNEDFVRTAKAKGV FT PPLRILSQHVLRNAAIPIVTVIGIGLAFLISGVVITESVFNLPGLGRLTIDAVLSRDYP FT VVQGVILFFACVYILVNLLIDMLYVVIDPRIRY" FT misc_feature 180640..180699 FT /note="Signal peptide predicted for BP1824 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.692) with cleavage site FT probability 0.226 between residues 20 and 21" FT misc_feature join(180658..180726,180934..181002,181036..181104, FT 181162..181230,181345..181413,181495..181563) FT /note="6 probable transmembrane helices predicted for FT BP1824 by TMHMM2.0 at aa 7-29, 99-121, 133-155, 175-197, FT 236-258 and 286-308" FT misc_feature 181252..181467 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature 181255..181341 FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature 181357..181431 FT /note="ScanRegExp hit to PS00043, Bacterial regulatory FT proteins, gntR family signature." FT CDS 181602..182432 FT /transl_table=11 FT /locus_tag="BP1825" FT /product="probable probable inner membrane component of FT binding-protein-dependent transport system" FT /note="Similar to Rhizobium sp probable peptide ABC FT transporter permease protein Y4tQ SW:Y4TQ_RHISN (Q53192) FT (291 aa) fasta scores: E(): 1e-49, 52.96% id in 270 aa, and FT to Rhizobium loti ABC transporter, permease protein Mlr6290 FT TR:Q989T2 (EMBL:AP003008) (280 aa) fasta scores: E(): FT 5.1e-46, 49.8% id in 261 aa" FT /db_xref="GOA:Q7VXF0" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7VXF0" FT /protein_id="CAE42111.1" FT /translation="MTSILRHNRLALLGGGVLLLMVAISVAASWIASTDPAMMQPRMRL FT TPPGEAFLLGTDALGRDVYSRVVHGSRMSLAIGALVVLITIAIGTLIGLVAGASRIMDR FT VLMRIMDGVMAIPGILLAVALVSLFGASLASVVIAIAVPEIPRVVRLVRSVVLSVREEP FT YVEAAVGLGVPYPKVVWRHILPNCFVPLIVQASYVFAAAILLEAVLGFLGVGFPPEIPT FT FGNILAEARPVFQRAPWATVAPGLLLAVTVLAVNLLGDGLRDSLDPKLARRAND" FT misc_feature 181602..181682 FT /note="Signal peptide predicted for BP1825 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.687 between residues 27 and 28" FT misc_feature join(181635..181703,181827..181895,181956..182024, FT 182181..182249,182310..182378) FT /note="5 probable transmembrane helices predicted for FT BP1825 by TMHMM2.0 at aa 12-34, 76-98, 119-141, 194-216 and FT 237-259" FT misc_feature 182067..182288 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature 182070..182156 FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign. Confirmed by FT InterPro eMOTIF pattern match." FT CDS 182425..184059 FT /transl_table=11 FT /locus_tag="BP1826" FT /product="probable ATP-binding component of ABC FT transporter" FT /note="Similar to Rhizobium meliloti probable ABC FT transporter, ATP-binding protein Sma1434 TR:AAK65441 FT (EMBL:AE007265) (550 aa) fasta scores: E(): 4.3e-80, 48.08% FT id in 549 aa, and to Pseudomonas aeruginosa probable FT ATP-binding component of ABC transporter Pa2061 TR:Q9I254 FT (EMBL:AE004632) (536 aa) fasta scores: E(): 1.5e-76, 49.24% FT id in 526 aa" FT /db_xref="GOA:Q7VXE9" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VXE9" FT /protein_id="CAE42112.1" FT /translation="MTENTPKQRVLEVSGLAIRAGARTLVQDVTLSLAQGEILCLVGES FT GSGKSLTASAVMGLLPGNLGVGAGSIRLDGEDLTAASPARMQALRGDRMAMVFQEPMTS FT LNPLMRVGRQIAEVLQVHRPDLGAGQVRARVLELMGDVHLPTPEALMDAFPHQLSGGQR FT QRIMIAMALALEPALIIADEPTTALDVTTQVQVLKLFRQLLAKHSSAVLFITHDFDVVR FT DIADHVAVMQLGRIVEQGPAGQVLDAPRHDYTRKLLAAVPSGVPKTQQNASSDELLSVS FT GLNLVYESRGLLGPARRTHAVADVGFTLKKGETLGVVGESGSGKSTLGRCITRAHAPTS FT GRIVFDGVDIAGLSGKALRAVRRRVQMVFQDPYRSLNPRRRILHALIEGPIESGVDRKT FT ACARAAELMALVGLPADGLQRYPHQFSGGQRQRICIARALAMEPDLIVADEAVSALDVS FT VQAQVLELFEDLQKRLGFAMIFITHDLRVAAQVCDRIGVMQKGRLLELGPVRQVIHAPQ FT HPYTRHLFDSLPGRVGQTAEPAMELQA" FT misc_feature 182530..183126 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 182551..182574 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 182896..182940 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 183358..183927 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 183379..183402 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 183697..183741 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 184056..185411 FT /transl_table=11 FT /locus_tag="BP1827" FT /product="putative amidase" FT /EC_number="3.5.1.4" FT /note="Similar to Pseudomonas putida amidase SW:AMID_PSEPU FT (O69768) (466 aa) fasta scores: E(): 2e-26, 32.39% id in FT 460 aa, and to Rhizobium meliloti putative amidase protein FT Smc02881 TR:CAC41593 (EMBL:AL591782) (453 aa) fasta scores: FT E(): 2.4e-38, 35.57% id in 447 aa" FT /db_xref="GOA:Q7VXE8" FT /db_xref="InterPro:IPR000120" FT /db_xref="UniProtKB/TrEMBL:Q7VXE8" FT /protein_id="CAE42113.1" FT /translation="MTSTDQHIARAGVAELARGIARGAFTPTEVTDVFLRRIQDLNPAI FT GAFVAVYEDEARHAARQATQALAQGQRLSPLHGIPFAVKDIVDVAGKFTTYGSRTGAGR FT QAGATAEYVRALLDAGMILLGKTHTVEFAFGGWGTNQRMGTPRNPLRADVPCATGGSSS FT GSGAAVGAQMVPFAVGTDTGGSIRIPSAFCGLTGMRPSMGRHSGAGVMSLSHTLDTIGP FT LARTVEDVQMLDDLLTGKTATDTAQPGSQAVARVRDARIGVLGAQWLGAIEPEVAHAYA FT QSLRAFEAMGAMLVELALPFDREAFAQLTSTLIACEGLQFAGKYAHDPLSGMDEDVRAR FT FLVGDQYDAEAYAGLLGRRSAMIDTFTQAMAGVKALLMPTTPCVAQPLAGLEQSPYNPA FT VYTRLPAWLGCCALAVPNGTGAHGLPTSLQIVGLPESDRLVMSLGRAYQEYA" FT misc_feature 184140..185378 FT /note="HMMPfam hit to PF01425, Amidase" FT misc_feature 184413..184436 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 184530..184625 FT /note="ScanRegExp hit to PS00571, Amidases signature. FT Confirmed by InterPro eMOTIF pattern match." FT CDS join(185589..186017,186016..186321) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1828" FT /product="putative lipoprotein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 143. The sequence has been checked FT and believed to be correct. No significant database FT matches" FT /db_xref="PSEUDO:CAE42114.1" FT misc_feature 185607..185639 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 185817..185849 FT /note="ScanRegExp hit to PS00133, Zinc carboxypeptidases, FT zinc-binding region 2 signature." FT variation 186023 FT /note="14 bp deletion in pertussis, relative to FT parapertussis and bronchiseptica, around this position" FT CDS 186318..187895 FT /transl_table=11 FT /locus_tag="BP1829" FT /product="lipoprotein" FT /note="Similar to Escherichia coli lipoprotein PilN FT TR:O07372 (EMBL:AB021078) (560 aa) fasta scores: E(): FT 2.3e-11, 24.69% id in 567 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VXE7" FT /protein_id="CAE42115.1" FT /translation="MKARRLAMAGLSLALGGCSLSQQMQAMRDAATSLRARLLEGQQAV FT GRAGERPAREAAQDVARPWLAGRAQPLAREVLLPPALRADVDTTLLFAGKATLPVLAER FT LHRATGIAVRVHPDALLPRAAFLPRLAGQAELAAEPPAQAELRAGPRPLADTLDALAAQ FT LYVHWRYHRGAIEFYRTETRVFDVRTLALAASAQARLGRAGSGETGSFDHASSTVLSAD FT AGKALQAVRDRVAAFLTRAGVIAEIEAGGSTLAVTDTPEALARIEKYLQGENRALTRRV FT RLVFEELTVRTTAAAEGGIDWQAVYASARAAASYAMPGGAGAAGALGARVLAGPWRDAR FT ALIAALSTMGAVLRHRSIPMLTLNRRAVTHAVRTTFSYVDQVQRLSPTAAAPGGRDAVP FT GLAVQQKRETVGTFLTLLPEARDDGRILLSISYDNTIAQPLRTLTFGEGGQQVSLQQIA FT IDGSGIVQQVELLPGQPVILSGFDHSEDQYERHRLFPDAPLAAGGHDRTARERVTTVVM FT VTAQIDEG" FT misc_feature 186318..186380 FT /note="Signal peptide predicted for BP1829 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.463 between residues 21 and 22" FT misc_feature 186339..186371 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 187899..189173 FT /transl_table=11 FT /locus_tag="BP1830" FT /product="hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VXE6" FT /protein_id="CAE42116.1" FT /translation="MRAATHPPLVLQQTQGGPMLAFGLTWFAVLGSHAALQGRARARAL FT RATHYVVGGRHAVAAGCARLPRRYGAMAIHSAAQAYASLHPDGAQAGVASLPDGQGWLI FT AVQDGAVLASADRLFADAAQAQACLRTLLAQRPDLREVPAQAALDTLLARPDPSARLAP FT LASRWSRAPVAARAVVLALAVAGGASLWRGLGQAPPPAAPDPRAVWRAAQAEFLRGWPV FT HTSSELARVLDTLQALPLQVAGWALRQAQCVPGPAWHCDADYHRVDAAATSLAFAAAVP FT PGWRMRLHTLEHTRVAWTLAGDQHGLDRTAPASPADTLALAATLQRASAAFTHVSVGAA FT QALAGPAWDGPPELAPPAAPELHRREVVLDGPLRSLALVWPLPAPIGWTAVSLRVVPDA FT IATLRASVLSLHLQGSLYEQTTSRS" FT CDS 189271..189645 FT /transl_table=11 FT /locus_tag="BP1831" FT /product="hypothetical protein" FT /note="The N-terminal region of this CDS is similar to FT Streptomyces coelicolor hypothetical 7.7 kDa protein FT Sc7h1.36C TR:O54195 (EMBL:AL021411) (81 aa) fasta scores: FT E(): 0.24, 45.45% id in 66 aa" FT /db_xref="InterPro:IPR013838" FT /db_xref="UniProtKB/TrEMBL:Q7VXE5" FT /protein_id="CAE42117.1" FT /translation="MRELLRRETLAAAQPPRPAAPAPWSDAPAARKAAPGPRADRIVLL FT AIYGVGAALRAEVSINRRHWRYLAGQRRPFGQAPEARYQLEAIAAPCVHLRSGAVRRTA FT CLAPAASLDNGAASAAGAAP" FT CDS join(189642..191003,191015..191368) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1832" FT /product="putative general secretion pathway protein FT (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 454. The sequence has been checked FT and believed to be correct. Similar to Klebsiella FT pneumoniae general secretion pathway protein E PulE FT SW:GSPE_KLEPN (P15645) (497 aa) fasta scores: E(): 9.5e-13, FT 27.78% id in 547 aa, and to Escherichia coli probable FT general secretion pathway protein E GspE or b3326 FT SW:GSPE_ECOLI (P45759) (493 aa) fasta scores: E(): 8.8e-12, FT 24.13% id in 547 aa" FT /db_xref="PSEUDO:CAE42118.1" FT misc_feature 190260..190634 FT /note="HMMPfam hit to PF00437, Bacterial type II secretion FT system protein" FT misc_feature 190476..190499 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 190821..190907 FT /note="HMMPfam hit to PF00437, Bacterial type II secretion FT system protein" FT variation 191004..191014 FT /note="11 bp insertion in pertussis relative to FT parapertussis and bronchiseptica" FT CDS 191361..192494 FT /transl_table=11 FT /locus_tag="BP1833" FT /product="putative general secretion pathway protein" FT /note="Similar to Escherichia coli integral membrane FT protein PilR TR:O07376 (EMBL:AB021078) (365 aa) fasta FT scores: E(): 3.3e-06, 24.07% id in 353 aa, and to FT Caulobacter crescentus general secretion pathway protein F FT Cc0175 TR:Q9ABQ1 (EMBL:AE005692) (403 aa) fasta scores: FT E(): 0.052, 23.94% id in 355 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VXE4" FT /protein_id="CAE42119.1" FT /translation="MAEHAALASAWRAAGALGQRLDAWRFGAERGDYYEYLADMLEGLQ FT GRQTLRDIFETDAARHGEASVRGRLARRWLHRYQDCGGDLRATWARCLPEGDCTLLALA FT QAAGGGALGIVLRDLAHLTRLTQGMRREFCVTIAAGLVAMTVACALLAAVPAFSAPRLR FT LVFQAVPPDYHGAWSAGLFALARYVEAAWSAAVAALTAAVALVCWSLPRYAGRARVFLD FT RWQPWRLYRDMQAIRFLALATVLLRQRGNIDTRLRTALLVQGADAPPWLAWHLERMLLR FT VDAGVVDASVFDTGLFEPAHAWFMADMVAAHGLADGLARARTRVEAHMLPRLRRQAQGL FT RWALLLGAVGAVLALALWHYAAIDDLRHALVSFYASQ" FT misc_feature join(191757..191825,191922..191990,192375..192443) FT /note="3 probable transmembrane helices predicted for FT BP1833 by TMHMM2.0 at aa 133-155, 188-210 and 339-361" FT CDS 192532..193137 FT /transl_table=11 FT /locus_tag="BP1834" FT /product="putative fimbrial protein" FT /note="Similar to Escherichia coli type IV prepilin PilS FT TR:O88170 (EMBL:AB007463) (204 aa) fasta scores: E(): 0.62, FT 24.49% id in 196 aa, and to Salmonella typhi PilS protein FT TR:Q9ZIU9 (EMBL:AF000001) (206 aa) fasta scores: E(): 0.71, FT 29.78% id in 188 aa" FT /db_xref="InterPro:IPR001120" FT /db_xref="UniProtKB/TrEMBL:Q7VXE3" FT /protein_id="CAE42120.1" FT /translation="MSHTILSGRQAGFSLVEVSIVTAIVLLVAIIGIPAIGSYVIESKV FT PRVGEELQRFVARTKANAQGDGAAPYTGIGTASLAHALRDSSVVSVRGEGASATVAHGL FT GGQGAGAHGVISVAPAAPGGAPPGSAFTLTLTNVNGAACPALASVMQRVSDIIAVQGKA FT GPVVVKNALAVPALPYRAQAAQAQCVAGDRNTFVFTAR" FT misc_feature 192562..192624 FT /note="ScanRegExp hit to PS00409, Prokaryotic N-terminal FT methylation site." FT CDS 193134..193952 FT /transl_table=11 FT /locus_tag="BP1835" FT /product="putative exported protein" FT /note="no significant database matches" FT /db_xref="InterPro:IPR012902" FT /db_xref="UniProtKB/TrEMBL:Q7VXE2" FT /protein_id="CAE42121.1" FT /translation="MRSAHAQGGLALLELAVAAALAAMAAVWAANRLVQDAQDAAARGA FT GVWLGEIQRGLDQLLQRHFDTLADGLAPRDERGRALFRDAWRPTLPELQAAGLLARSLP FT RHSPLGTGVIMLVRRDPHCPRAGCRLDALAWLDRPLLDGHGQVDLMRMAPLVAATAGRG FT GFAVAGGVRGAAFRFANPPWPGVARLPAGTPLAWAGLAAGKASPAFGGAYSVNSHVGCR FT SYSGHTSRNPLTGQCSCPPGYASVIMAQAIDRVDGAPGFTSFVCVRPGKE" FT misc_feature 193134..193208 FT /note="Signal peptide predicted for BP1835 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.996) with cleavage site FT probability 0.554 between residues 25 and 26" FT CDS 194024..196648 FT /transl_table=11 FT /gene="alaS" FT /gene_synonym="lovB" FT /locus_tag="BP1836" FT /product="alanyl-tRNA synthetase" FT /EC_number="6.1.1.7" FT /note="Similar to Escherichia coli alanyl-tRNA synthetase FT AlaS or LovB or B2697 SW:SYA_ECOLI (P00957) (876 aa) fasta FT scores: E(): 3.9e-197, 62.1% id in 876 aa, and to Neisseria FT meningitidis alanyl-tRNA synthetase AlaS or Nma1788 FT TR:Q9JTG4 (EMBL:AL162757) (874 aa) fasta scores: E(): FT 9.7e-197, 62.2% id in 881 aa" FT /db_xref="GOA:Q7VXE1" FT /db_xref="InterPro:IPR012947" FT /db_xref="UniProtKB/Swiss-Prot:Q7VXE1" FT /protein_id="CAE42122.1" FT /translation="MKSSEIRQKFLQFFQSKGHTIVPSSSLVPANDPTLLFTNSGMVQF FT KDVFTGKEARAYKRATSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRE FT AIQYAWELLTQVYKLPAEKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYAS FT DNFWQMADTGPCGPCSEIFYDHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGN FT MERLPKPCVDTGMGLERIAAVLQHVHSNYEIDLFQKLIAAAARETGVKDLADNSLKVIA FT DHIRACAFLIVDGIIPSNEGRGYVLRRIVRRALRHGYKLGQTKSFFHRLVPDLVAEMGE FT AYPELAQVAERVAQVLRQEEERFGETLEHGMKILDGALAKVAKGDPLDGTTLFTLYDTY FT GFPVDLTADICREREVEVDMAGFEAAMQRQREQARAAGKFKMAEGLSYEGAETRFEGYE FT NLELSGVKVTALYVEGTQVEQVSAGQDAVVVLDATPFYAESGGQVGDTGLLEAGGVRFA FT VADTLKIQPGVFGHHGTLEAGALKVGDTLLARVDAVRRARTVRNHSATHLMHKALREVL FT GAHVQQRGSLVDPDKTRFDFAHDAPMTAEQIARVEAIVNAEVLANQATEAKVMAYDDAV FT KGGAMALFGEKYGDTVRVLDIGFSRELCGGTHVRRTGDIGLFKVVSEGGVAAGVRRIEA FT ITGDNALAWVQDQNALLQRAAGVLRAPAHELPERIAQVQEQLKALEKELEQARTKLAAS FT AGNDLVATATVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVLLAAGSADGKIS FT LVGGVTADLTGRIKAGDLVGFVAGQVGGKGGGRPDMAMGGGTDLAALPAAVASVQKWVD FT ERL" FT misc_feature 194036..196129 FT /note="HMMPfam hit to PF01411, tRNA synthetases class II FT (A)" FT misc_feature 194723..194752 FT /note="ScanRegExp hit to PS00339, Aminoacyl-transfer RNA FT synthetases class-II signature 2." FT misc_feature 196406..196627 FT /note="HMMPfam hit to PF02272, DHHA1 domain" FT CDS 196635..196889 FT /transl_table=11 FT /locus_tag="BP1837" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nma0882 or Nmb0681 SW:Y882_NEIMA (Q9JR98) (74 aa) FT fasta scores: E(): 1.1e-10, 61.66% id in 60 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa1006 FT TR:Q9I4W7 (EMBL:AE004533) (83 aa) fasta scores: E(): FT 1.6e-10, 45.23% id in 84 aa" FT /db_xref="GOA:Q7VXE0" FT /db_xref="HSSP:1DCJ" FT /db_xref="InterPro:IPR001455" FT /db_xref="UniProtKB/TrEMBL:Q7VXE0" FT /protein_id="CAE42123.1" FT /translation="MSASDTGGLPSYQHEVDASGLTCPLPILRAKKALAQMESGQVLRV FT VTTDPNAIRDFQAFARQTGNTLLAQREAEGRGEHFLQRR" FT misc_feature 196668..196883 FT /note="HMMPfam hit to PF01206, Uncharacterized protein FT family UPF0033" FT misc_feature 196680..196754 FT /note="ScanRegExp hit to PS01148, Uncharacterized protein FT family UPF0033 signature." FT CDS complement(196956..197537) FT /transl_table=11 FT /locus_tag="BP1838" FT /product="putative exported protein" FT /note="Weakly similar to Bacillus subtilis endoglucanase FT precursor TR:Q03882 (EMBL:M38634) (148 aa) fasta scores: FT E(): 4, 26.71% id in 131 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VXD9" FT /protein_id="CAE42124.1" FT /translation="MKHCSILAPLTRLAACGALAAVLAVPLPAAARVGDAALVSVTGQI FT TAVDPATRTVTVRGPQGNEVPLQAGPDVRNFDRIKVGDTMRVDYYESVSIATRAKGSGV FT PEVRSETVATRAKEGALPQGAVGRSTTITAEIWHIAKDGRTVILQGPQGGRETFHLRSA FT AAQEKLRTLKEGDLVDFTVTRALAAAVRSR" FT misc_feature complement(197445..197537) FT /note="Signal peptide predicted for BP1838 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.885 between residues 31 and 32" FT misc_feature complement(197514..197537) FT /note="ScanRegExp hit to PS00443, Glutamine FT amidotransferases class-II active site." FT CDS 197841..198101 FT /transl_table=11 FT /gene="rpsP" FT /locus_tag="BP1839" FT /product="30S ribosomal protein S16" FT /note="Similar to Escherichia coli 30S ribosomal protein FT S16 RpsP or B2609 or Z3903 or Ecs3472 SW:RS16_ECOLI FT (P02372) (82 aa) fasta scores: E(): 5.3e-17, 58.44% id in FT 77 aa, and to Ralstonia solanacearum probable 30S ribosomal FT subunit protein S16 RpsP TR:CAD14635 (EMBL:AL646061) (84 FT aa) fasta scores: E(): 1.3e-23, 72.61% id in 84 aa" FT /db_xref="GOA:Q7VXD8" FT /db_xref="InterPro:IPR000307" FT /db_xref="UniProtKB/Swiss-Prot:Q7VXD8" FT /protein_id="CAE42125.1" FT /translation="MLVIRLARGGSKKRPFYNLVATDSRNRRDGRFVERVGFYNPVAAE FT GTENLRIALDRVQYWTGNGALLSPAVERLVKEYSAKVSAAA" FT misc_feature 197862..198044 FT /note="HMMPfam hit to PF00886, Ribosomal protein S16" FT CDS 198267..198890 FT /transl_table=11 FT /gene="rimM" FT /locus_tag="BP1840" FT /product="16S rRNA processing protein" FT /note="Similar to Escherichia coli 16S rRNA processing FT protein RimM or B2608 SW:RIMM_ECOLI (P21504) (182 aa) fasta FT scores: E(): 0.00051, 29.29% id in 198 aa, and to Xylella FT fastidiosa probable 16S rRNA processing protein RimM or FT Xf0108 SW:RIMM_XYLFA (Q9PH38) (170 aa) fasta scores: E(): FT 1.7e-06, 28.35% id in 194 aa" FT /db_xref="GOA:Q7VXD7" FT /db_xref="InterPro:IPR002676" FT /db_xref="UniProtKB/Swiss-Prot:Q7VXD7" FT /protein_id="CAE42126.1" FT /translation="MSEAAHSGAAPADLVELGRIASAYGVKGWVKVQPHSAQAEVLRTV FT SHWWLTRPAPQAARDVVASVPRAYQVLQARVHGGAVVAQLAGIDDRDQAEALRGCFVQA FT ARSAFPAPADDEYYWVDLIGCALYSDADGEPRLLGVVDEVFDNGAHAVLKVLRQQIQPG FT QPGPVPLLDPKGRPLEELVPFVRAHIRHVDLAARRIDSDWPLDY" FT misc_feature 198312..198887 FT /note="HMMPfam hit to PF01782, RimM" FT CDS 198890..199663 FT /transl_table=11 FT /gene="trmD" FT /locus_tag="BP1841" FT /product="tRNA (guanine-N1)-methyltransferase" FT /EC_number="2.1.1.31" FT /note="Similar to Escherichia coli tRNA FT (guanine-N1)-methyltransferase TrmD or B2607 or Z3901 or FT Ecs3470 SW:TRMD_ECOLI (P07020) (255 aa) fasta scores: E(): FT 5.3e-46, 53.54% id in 254 aa, and to Salmonella typhimurium FT tRNA (guanine-N1)-methyltransferase TrmD or Stm2674 FT SW:TRMD_SALTY (P36245) (255 aa) fasta scores: E(): 1.7e-46, FT 54.33% id in 254 aa" FT /db_xref="GOA:Q7U361" FT /db_xref="InterPro:IPR002649" FT /db_xref="UniProtKB/Swiss-Prot:Q7U361" FT /protein_id="CAE42127.1" FT /translation="MRFDVVTLFPDMFGLVRDQGVTGRAHAQGLWALHAWNPRDFTHDV FT HRTVDDRPYGGGPGMVMMAAPLEAAVAAAQAARAAQGLQAAPVILLSPAGRRYDQAEAT FT TLAAGTGAIFICGRYEGVDQRFIERCVTHELSLGDFVLSGGELAALAMMDAAVRLLPGV FT LNDGDSALQDSFNAALDGLLDSPHYTRPEVYEGVPVPQPLLSGHHANIARWRREQSLRL FT TASRRPELIERARGEGRLSKADERFLASLAGERES" FT misc_feature 198953..199603 FT /note="HMMPfam hit to PF01746, tRNA FT (Guanine-1)-methyltransferase" FT CDS complement(199660..200868) FT /transl_table=11 FT /locus_tag="BP1842" FT /product="probable class-V aminotransferase" FT /note="Similar to Escherichia coli selenocysteine lyase FT CsdB or SufS or B1680 SW:CSDB_ECOLI (P77444) (406 aa) fasta FT scores: E(): 1.3e-18, 29.57% id in 355 aa, and to FT Streptomyces capreolus capreomycin acetyltransferase Cac FT TR:Q53824 (EMBL:U13077) (359 aa) fasta scores: E(): FT 8.9e-38, 39.33% id in 361 aa" FT /db_xref="GOA:Q7VXD6" FT /db_xref="InterPro:IPR015422" FT /db_xref="UniProtKB/TrEMBL:Q7VXD6" FT /protein_id="CAE42128.1" FT /translation="MPATLTDELVAALRARTPGAQGAFIHFNHAGASLPSAGTLQAIKA FT HLRLEATQGPMEAGVQAREQAERARLLAARLLNAQPAEVALTTGNSAGWGAAFAALGPW FT RAGDRILVARHEWGGNLAAMRLAAQRAGATIGTIASDESGAVDPGALQAMLDERVRLIA FT LTWLPANGGLVNPAAAVGRIARRHGIAYFVDAAQAVGQLPIDVAEVGCDVLSGAGRKAL FT RGPRGTGLLYVRQAFLERLAPAWVDTWSAPLGEDGCPIVRGDAARFESAENSVALRCGL FT AHALHEALELDIASIRARIDAVATRLRTRLAALDGITLLDQGRVRSGLIAFDVAGWQAD FT AVQRELARQGIALGCNGVAYTPLDMQARGLRQIARASVSYLTTEAEIDALLDALAALAR FT RAP" FT misc_feature complement(199699..200763) FT /note="HMMPfam hit to PF00266, Aminotransferase class-V" FT misc_feature complement(200176..200238) FT /note="ScanRegExp hit to PS00595, Aminotransferases class-V FT pyridoxal-phosphate attachment site." FT CDS complement(200894..201367) FT /transl_table=11 FT /locus_tag="BP1843" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Smc02103 TR:CAC46072 (EMBL:AL591787) (154 aa) fasta scores: FT E(): 2.4e-22, 50% id in 156 aa, and to Agrobacterium FT tumefaciens strC58 Agr_c_2535p TR:AAK87164 (EMBL:AE008063) FT (156 aa) fasta scores: E(): 8.6e-21, 46.75% id in 154 aa" FT /db_xref="HSSP:1J7H" FT /db_xref="InterPro:IPR006175" FT /db_xref="UniProtKB/TrEMBL:Q7VXD5" FT /protein_id="CAE42129.1" FT /translation="MTASISVRVAELGLTLEPANAPAANYVPFVRDGNLLYISGQVPRV FT DGKPVHLGRLGDSVSDEEGVQAARQAALGVLAQLAAATGDRLQGVARIVRLGVFVAAAP FT DFNRHSAIANGASDLMVNVFGEAGRHARSAVGVASLPNGVAVEVEAVVALAQA" FT misc_feature complement(200906..201316) FT /note="HMMPfam hit to PF01042, YjgF family" FT CDS complement(201441..202391) FT /transl_table=11 FT /locus_tag="BP1844" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA4" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA4" FT /protein_id="CAE42130.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 201441..201472 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(201441..202493) FT misc_feature complement(201477..202010) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(202068..202133) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(202462..202493) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(202490..203506) FT /transl_table=11 FT /locus_tag="BP1845" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli unknown protein from FT 2D-PAGE YgfZ or B2898 SW:UP14_ECOLI (P39179) (325 aa) fasta FT scores: E(): 7.2e-17, 31.3% id in 345 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa0759 FT TR:Q9I5H0 (EMBL:AE004511) (314 aa) fasta scores: E(): FT 1.6e-13, 32.91% id in 316 aa" FT /db_xref="GOA:Q7VXD4" FT /db_xref="InterPro:IPR006222" FT /db_xref="UniProtKB/TrEMBL:Q7VXD4" FT /protein_id="CAE42131.1" FT /translation="MHAFYDSIPARADGSAQCAPLASLRVIGAAGADALAFLHGQLTQD FT VTGQPADHARLAGYCTAKGRLLATLVMWLAAAADESAPVWQALVRADVAEAVLKRLSMF FT VLRAKARLAPVPAWAAGVQCAPAALAALQDAAGGALPAAPWQRAELPTGTWIGAPSADA FT QPRWWWIATEAQLERAGALAAHLGRASESAWQAADLAAGLPWIGAATQDVFIPQTVNLD FT LIGGVSFTKGCYPGQEVVARSHYRGTVKRRMAHGVIAEAPADLPDPLAGQDIYDSARPD FT EPCGRVVDAARSDGQLALLFETTLASLPDGDLRLLSAQGPRIALAPLPYELAGNAAG" FT CDS 203685..204719 FT /transl_table=11 FT /locus_tag="BP1846" FT /product="putative exported protein" FT /note="Similar to Ralstonia solanacearum conserved FT hypothetical protein Rsc1783 TR:CAD15485 (EMBL:AL646066) FT (377 aa) fasta scores: E(): 1.8e-60, 50% id in 334 aa, and FT to Pseudomonas aeruginosa hypothetical protein Pa2963 FT TR:Q9HZN7 (EMBL:AE004722) (349 aa) fasta scores: E(): FT 3.3e-46, 44.27% id in 332 aa" FT /db_xref="InterPro:IPR003770" FT /db_xref="UniProtKB/TrEMBL:Q7VXD3" FT /protein_id="CAE42132.1" FT /translation="MRKRIRFYFLLLVLVALLGAALAAGGAWTWMHRPVALKSDRIDFV FT VDPGSAPRAIARTLNQAGVAVWEPGFVWMARLSELDKQIKAGGYQAIDGDSPWQLLQRL FT ARGDMSQRQITFLEGWTFRQMRQALREHPDVKQTLGETSDEALMERLGSTVTHPEGMFF FT PDTYVFTPGSTDFDILRRAYQEGQRILESTWAKRQDGLPVGTPYEALILASIVEKETGH FT GSERARVAGVFANRLRIGMLLQTDPTVIYGMGEAYQGRIRKRDLQTDTPWNTYTRPGLP FT PTPIAAPGRAALLAAVQPERHKYLFFVSRGNGTSEFSVNLNDHNRNVSRYILGQGQPQQ FT GSQQ" FT misc_feature 203685..203753 FT /note="Signal peptide predicted for BP1846 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.721 between residues 23 and 24" FT misc_feature 203685..204686 FT /note="HMMPfam hit to PF02618, Uncharacterized BCR, YceG FT family COG1559" FT misc_feature 204009..204074 FT /note="Predicted helix-turn-helix motif with score 1112 FT (+2.97 SD) at aa 113-134, sequence MSQRQITFLEGWTFRQMRQALR" FT CDS 204716..205342 FT /transl_table=11 FT /gene="tmk" FT /locus_tag="BP1847" FT /product="thymidylate kinase" FT /EC_number="2.7.4.9" FT /note="Similar to Escherichia coli thymidylate kinase Tmk FT or B1098 SW:KTHY_ECOLI (P37345) (213 aa) fasta scores: E(): FT 2.1e-22, 42.18% id in 211 aa, and to Pseudomonas aeruginosa FT thymidylate kinase Tmk or pa2962 SW:KTHY_PSEAE (Q9HZN8) FT (210 aa) fasta scores: E(): 7.3e-36, 55.1% id in 196 aa" FT /db_xref="GOA:Q7VXD2" FT /db_xref="InterPro:IPR018095" FT /db_xref="UniProtKB/Swiss-Prot:Q7VXD2" FT /protein_id="CAE42133.1" FT /translation="MTPRGRFITLEGVDGAGKSTHTAWMVQALRDLGLTVLATREPGGT FT PVGEKLRELLLSEPMALETETLLMFAARCEHVREVIAPALARGEWVVCDRFTDASYAYQ FT GGGRQLGAARVAALEQWVHPDLQPDRTWLFDVPLDVARARLARSRQLDRFEREEDAFFE FT RTRAAYHERARSSDGRIRIIDSSRPLEVVRAQLDSEVRELVAQAA" FT misc_feature 204743..205303 FT /note="HMMPfam hit to PF02223, Thymidylate kinase" FT misc_feature 204749..204772 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 205124..205153 FT /note="ScanRegExp hit to PS00215, Mitochondrial energy FT transfer proteins signature." FT CDS 205339..206391 FT /transl_table=11 FT /gene="holB" FT /locus_tag="BP1848" FT /product="DNA polymerase III, delta' subunit" FT /EC_number="2.7.7.7" FT /note="Similar to Escherichia coli DNA polymerase III, FT delta' subunit HolB or B1099 SW:HOLB_ECOLI (P28631) (334 FT aa) fasta scores: E(): 8e-10, 29.94% id in 354 aa, and to FT Neisseria meningitidis putative DNA polymerase III, delta' FT subunit HolB or Nma0980 TR:Q9JV62 (EMBL:AL162754) (325 aa) FT fasta scores: E(): 3.6e-17, 34.4% id in 343 aa" FT /db_xref="GOA:Q7VXD1" FT /db_xref="HSSP:1A5T" FT /db_xref="InterPro:IPR004622" FT /db_xref="UniProtKB/TrEMBL:Q7VXD1" FT /protein_id="CAE42134.1" FT /translation="MSLGRFLPWQTEIARSWLSGRDRFAHAWLIHGNGGIGKLDFTAAA FT AASLLCESPRQGLACGECAACAWVASGNHPDLRRIRPEAVALEEGADQTEGAEEAEAGS FT GGAAAKRAPSKDIRIDQIRALEPWFNTATHRGGWRVALLYPAHALNVISANALLKVLEE FT PPAHTVFLLVADAPDRLLPTLVSRCRRLPLPTPSAGQALQWLGEQGVEPAADWLAAAGG FT APLAAQRLAARGDAPCPAWLAQLVQPLAAGKAPDVGTLTENLEKVAAAEWIDALQRLFT FT DLTLAAHGAASRYYPLLAEPVRQAAARAQPAQLAETARWLSRQRGLATHPLNAKLFVHA FT ALQRVVLSCQ" FT CDS 206441..207211 FT /transl_table=11 FT /locus_tag="BP1849" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nmb0771 TR:Q9K050 (EMBL:AE002431) (259 aa) fasta FT scores: E(): 1.5e-44, 50% id in 252 aa, and to Vibrio FT cholerae hypothetical protein Vc2014 TR:Q9KQI4 FT (EMBL:AE004276) (255 aa) fasta scores: E(): 1.7e-43, 49.8% FT id in 255 aa" FT /db_xref="GOA:Q7VXD0" FT /db_xref="HSSP:1J6O" FT /db_xref="InterPro:IPR018228" FT /db_xref="UniProtKB/TrEMBL:Q7VXD0" FT /protein_id="CAE42135.1" FT /translation="MYVDSHCHLNFPELAQDLPAVLDRMAANQVTHALVVSVNMPDWPG FT LMQLVEPHGNLWASVGVHPDYEDTPDPEPAELERLAAHPKVVAIGETGLDYYRLSEPLD FT WQRERFRRHIRAARSTGLPLIVHTRASAQDTVRLLREEGADEVGGVMHCFTESWEIAQQ FT AVALNFHISLSGIVTFKNAQLVHEVAANMPLDRLLIETDSPYLAPVPYRGKLNDPSKVI FT HVAEKIAELKGIPVAEVAHASTENFFKLFNKIKR" FT misc_feature 206444..206470 FT /note="ScanRegExp hit to PS01137, TatD deoxyribonuclease FT family signature 1. Confirmed by InterPro eMOTIF pattern FT match." FT misc_feature 206459..207196 FT /note="HMMPfam hit to PF01026, TatD related DNase" FT misc_feature 207002..207052 FT /note="ScanRegExp hit to PS01091, TatD deoxyribonuclease FT family signature 3." FT CDS 207262..208098 FT /transl_table=11 FT /locus_tag="BP1850" FT /product="putative exported protein" FT /note="Similar to Chromatium vinosum ankyrin homolog FT precursor SW:ANKH_CHRVI (Q06527) (323 aa) fasta scores: FT E(): 3.1e-09, 32.87% id in 219 aa" FT /db_xref="HSSP:1OT8" FT /db_xref="InterPro:IPR002110" FT /db_xref="UniProtKB/TrEMBL:Q7VXC9" FT /protein_id="CAE42136.1" FT /translation="MKPLRTRFLRWRGAAAGGLLAGALLASPAWAAKQADWWVYVHNDK FT ARDIGALLAAGADPNVRYDNGQPAIMRAVVDNAWEVFDVLAANRRTDLNAENPAGETPL FT MYLAVAGQTERAQALIARGAQVNRLGWTPLHYAASKGRLETARMLLGKQALVNAPSPDG FT TTPLMMAAYSGDRRMVQLLLDAGADITTRNLKGMSAADWAAFGKSEALARELKPMIARA FT EAERQARHGAVATSKLAPAAETPPTAQPAAASAAASQPGEGRSLSGVSGVRLNSYD" FT misc_feature 207262..207354 FT /note="Signal peptide predicted for BP1850 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 31 and 32" FT misc_feature 207454..207555 FT /note="HMMPfam hit to PF00023, Ank repeat" FT misc_feature 207556..207645 FT /note="HMMPfam hit to PF00023, Ank repeat" FT misc_feature 207646..207744 FT /note="HMMPfam hit to PF00023, Ank repeat" FT misc_feature 207745..207843 FT /note="HMMPfam hit to PF00023, Ank repeat" FT CDS 208294..209034 FT /transl_table=11 FT /locus_tag="BP1851" FT /product="probable transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa3174 TR:Q9HZ60 (EMBL:AE004741) FT (242 aa) fasta scores: E(): 1e-28, 41.77% id in 237 aa, and FT to Vibrio cholerae transcriptional regulator, putative FT Vca0029 TR:Q9KND6 (EMBL:AE004346) (244 aa) fasta scores: FT E(): 2.7e-19, 34.02% id in 241 aa" FT /db_xref="GOA:Q7VXC8" FT /db_xref="InterPro:IPR005471" FT /db_xref="UniProtKB/TrEMBL:Q7VXC8" FT /protein_id="CAE42137.1" FT /translation="MQEQAIAGGAERVLYVLATLAREEAPLTVAALAERTGLAQSTLYR FT QVALLKRWGFVLEQAGAYTPGPLCVQLARGFDQSSYLIQEALPDMTRLAADSGETVGLL FT VAMSDQAVCLEMVESRHPLRCSFVKGRGLPPLARGASAKSLMAFMAPARLQGRLHELAG FT QGVDAAALARDLEAIRAAGYAVSDSEVDAGVWGCSAPVFERPHQAAGSVTLMAPSTRVA FT ERTANLINLTLAAAKRISSRLQHS" FT misc_feature 208372..208437 FT /note="Predicted helix-turn-helix motif with score 1775 FT (+5.23 SD) at aa 27-48, sequence LTVAALAERTGLAQSTLYRQVA" FT misc_feature 208480..209019 FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator" FT CDS 209109..209852 FT /transl_table=11 FT /locus_tag="BP1852" FT /product="putative glutamine-binding periplasmic protein FT precursor" FT /note="Similar to Escherichia coli glutamine-binding FT periplasmic protein precursor GlnH or B0811 or Z1033 or FT Ecs0889 SW:GLNH_ECOLI (P10344) (248 aa) fasta scores: E(): FT 5.1e-24, 36% id in 250 aa, and to Yersinia pestis putative FT glutamine-binding periplasmic protein glnH TR:CAC91317 FT (EMBL:AJ414152) (247 aa) fasta scores: E(): 9.6e-25, 38.79% FT id in 250 aa" FT /db_xref="GOA:Q7VXC7" FT /db_xref="HSSP:1GGG" FT /db_xref="InterPro:IPR018313" FT /db_xref="UniProtKB/TrEMBL:Q7VXC7" FT /protein_id="CAE42138.1" FT /translation="MTTRRQLLTAALTLNLAWGAGAAHAQETIRAVTDATFPPMEFVKD FT GKRTGFDIELVEALAQAMGKKIEWIDIDFKGLIPALQAGRADIAVSAIYITAERQKVVD FT FTDPYYAGGLVVLTKKDGPVKSLKDLEGRKVSVQVGTKSVNYLKEHFPKVQRVEVEKNQ FT EMFNLVQIGRADAAVTGKPAAKLFAQSTQNLAVLSEQITTEEYGIAVPKSKSGLTRELN FT EALKKLKADGTYERIVNKWFEAQAK" FT misc_feature 209109..209183 FT /note="Signal peptide predicted for BP1852 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 25 and 26" FT misc_feature 209193..209840 FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3" FT misc_feature 209256..209297 FT /note="ScanRegExp hit to PS01039, Bacterial extracellular FT solute-binding proteins, family 3 signature." FT CDS join(209849..210241,210245..210517) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1853" FT /product="glutamine transport system permease (Pseudogene)" FT /note="Pseudogene. This CDS contains an in-frame TAG stop FT codon. The sequence has been checked and believed to be FT correct. Similar to Salmonella typhimurium glutamine FT transport system permease TR:P74887 (EMBL:U73111) (219 aa) FT fasta scores: E(): 3e-22, 37.15% id in 218 aa, and to FT Thermotoga maritima amino acid ABC transporter, permease FT protein tm0592 TR:Q9WZ61 (EMBL:AE001734) (216 aa) fasta FT scores: E(): 8.8e-31, 48.14% id in 216 aa" FT /db_xref="PSEUDO:CAE42139.1" FT misc_feature join(209906..209974,210011..210079,210092..210160) FT /note="3 probable transmembrane helices predicted for FT BP1853 by TMHMM2.0 at aa 20-42, 55-77 and 82-104" FT variation 210242..210244 FT /note="In-frame TAG stop codon in pertussis; CAG in FT parapertussis and bronchiseptica" FT misc_feature 210413..210481 FT /note="1 probable transmembrane helix predicted for BP1854 FT by TMHMM2.0 at aa 56-78" FT CDS 210514..211287 FT /transl_table=11 FT /gene="glnQ" FT /locus_tag="BP1855" FT /product="glutamine transport ATP-binding protein" FT /note="Similar to Bacillus stearothermophilus glutamine FT transport ATP-binding protein GlnQ SW:GLNQ_BACST (P27675) FT (242 aa) fasta scores: E(): 1.3e-40, 52.84% id in 246 aa, FT and to Archaeoglobus fulgidus glutamine ABC transporter, FT ATP-binding protein af0680 TR:O29577 (EMBL:AE001058) (242 FT aa) fasta scores: E(): 5.3e-44, 59.83% id in 244 aa. FT Similar to several B. pertussis CDSs: BP1181, P3828, FT BP1534, BP0054, BP1575, BP1362, P0768, and BP1510." FT /db_xref="GOA:Q7VXC6" FT /db_xref="HSSP:1B0U" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VXC6" FT /protein_id="CAE42140.1" FT /translation="MSTQEMIRIRGLRKAYGEHEVLRGIDFNVEASQVVVVIGPSGSGK FT STLLRCCNGLEVAQGGTIDICGHNLLKDGRLLPEAELNRLRMQVGMVFQGFNLFPHLSV FT LDNVTVGPRTLRGMSRAQAEELGGDLLAKVGLREKMAAMPGSLSGGQKQRVAIARALAM FT QPRVMLFDEPTSALDPELVGEVLQVMKLLAREGMTMMVVTHEMGFAREVADVVAVMDGG FT SIVESGPPELIFSQPREARTRAFLQAVLSASQGAA" FT misc_feature 210607..211179 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 210628..210651 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 210952..210996 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS join(211284..211463,211462..212232) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1856" FT /product="probable arginase (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 60. The frameshift occurs within a FT dimeric tract of (GCGGC)2. The sequence has been checked FT and believed to be correct. Similar to Ralstonia FT solanacearum probable arginase protein Rsc2645 TR:CAD16352 FT (EMBL:AL646071) (325 aa) fasta scores: E(): 1.2e-59, 57.37% FT id in 312 aa, and to Pseudomonas aeruginosa probable FT arginase family protein pa3175 TR:Q9HZ59 (EMBL:AE004741) FT (311 aa) fasta scores: E(): 4.8e-47, 51.66% id in 300 aa" FT /db_xref="PSEUDO:CAE42141.1" FT variation 211454..211463 FT /note="(GCGGC)2 in pertussis relative; (GCGGC)3 in FT bronchiseptica" FT misc_feature 211549..211788 FT /note="HMMPfam hit to PF00491, Arginase family" FT misc_feature 211636..211677 FT /note="ScanRegExp hit to PS00147, Arginase family signature FT 1." FT misc_feature 211723..211749 FT /note="ScanRegExp hit to PS00148, Arginase family signature FT 2." FT misc_feature 211993..212154 FT /note="HMMPfam hit to PF00491, Arginase family" FT misc_feature 212002..212067 FT /note="ScanRegExp hit to PS01053, Arginase family signature FT 3." FT CDS 212425..213714 FT /transl_table=11 FT /gene="gdhA" FT /gene_synonym="gdh" FT /locus_tag="BP1857" FT /product="glutamate dehydrogenase" FT /EC_number="1.4.1.3" FT /note="Similar to Thermotoga maritima glutamate FT dehydrogenase GdhA or Gdh or Tm1015 SW:DHE3_THEMA (P96110) FT (415 aa) fasta scores: E(): 2.3e-86, 55.17% id in 406 aa, FT and to Deinococcus radiodurans glutamate dehydrogenase, FT putative Dr0980 TR:Q9RVP5 (EMBL:AE001950) (392 aa) fasta FT scores: E(): 3.4e-85, 67.08% id in 322 aa" FT /db_xref="GOA:Q7VXC5" FT /db_xref="HSSP:1B26" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VXC5" FT /protein_id="CAE42142.1" FT /translation="MSQAPAHSLPSYLDAEHLGPWGIYLQQVDRVTPYLGPLARWVETL FT KRPKRALIVDVPIEMDNGSIAHFEGYRVQHNTSRGPGKGGVRFHQDVTLSEVMALAAWM FT SIKNAAVNLPYGGAKGGVRVDPRTLSHSELERMTRRYTSEIGVIIGPSKDIPAPDVNTN FT AQTMAWMMDTYSMNEGATATGVVTGKPIALGGSLGRVEATGRGVFVVGCEAARDLNLDV FT SKARIVVQGFGNVGGTAARLFHEAGAKVIAVQDHTGTIHNDGGLDVHKLLAHVGNQGGV FT AGFTGAQQLADDDFWGLETDFLIPAALEGQINENNAARVRAKVVVEGANGPTTPEADDI FT LRENGVYVVPDVLANAGGVTVSYFEWVQDFSSFFWSEEEINQRLERLMREAYSAVSQVA FT KEHKVTLRTAAFIVACTRILQARQVRGLYP" FT misc_feature 212761..212802 FT /note="ScanRegExp hit to PS00074, Glu / Leu / Phe / Val FT dehydrogenases active site. Confirmed by InterPro eMOTIF FT pattern match." FT misc_feature 213004..213702 FT /note="HMMPfam hit to PF00208, FT Glutamate/Leucine/Phenylalanine/Valine dehydrogenase" FT misc_feature 213313..213354 FT /note="ScanRegExp hit to PS01039, Bacterial extracellular FT solute-binding proteins, family 3 signature." FT CDS complement(join(213790..213936,213935..215275)) FT /pseudo FT /transl_table=11 FT /gene="aldH" FT /locus_tag="BP1858" FT /product="probable aldehyde dehydrogenase (Pseudogene)" FT /EC_number="1.2.1.3" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 447. The sequence has been checked FT and believed to be correct. Similar to Escherichia coli FT putative aldehyde dehydrogenase AldH or B1300 SW:DHAL_ECOLI FT (P23883) (495 aa) fasta scores: E(): 5.4e-98, 53.92% id in FT 497 aa, and to Pseudomonas aeruginosa probable aldehyde FT dehydrogenase Pa0219 TR:Q9I6R9 (EMBL:AE004460) (496 aa) FT fasta scores: E(): 1.7e-109, 60.61% id in 490 aa" FT /db_xref="PSEUDO:CAE42143.1" FT misc_feature complement(join(213801..213942,213935..215197)) FT /note="This hit extended beyond the end of the feature by 1 FT aa and was clipped." FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family" FT variation complement(213935..213937) FT /note="11 bp deletion in pertussis, relative to FT parapertussis, following this codon" FT misc_feature complement(214358..214393) FT /note="ScanRegExp hit to PS00070, Aldehyde dehydrogenases FT cysteine active site." FT misc_feature complement(214457..214480) FT /note="ScanRegExp hit to PS00687, Aldehyde dehydrogenases FT glutamic acid active site." FT CDS complement(215325..216572) FT /transl_table=11 FT /gene="amaB" FT /locus_tag="BP1859" FT /product="N-carbamoyl-L-amino acid amidohydrolase" FT /EC_number="3.5.1.-" FT /note="Similar to Bacillus stearothermophilus FT N-carbamoyl-L-amino acid amidohydrolase AmaB SW:AMB2_BACST FT (Q53389) (409 aa) fasta scores: E(): 6.5e-52, 41.08% id in FT 404 aa, and to Pseudomonas aeruginosa FT N-carbamoyl-beta-alanine amidohydrolase Pa0444 TR:Q9I673 FT (EMBL:AE004481) (427 aa) fasta scores: E(): 2.8e-98, 61.97% FT id in 405 aa. Also similar to BP2301,70.120% identity FT (70.803% ungapped) in 415 aa overlap." FT /db_xref="GOA:Q7VXC4" FT /db_xref="InterPro:IPR011650" FT /db_xref="UniProtKB/TrEMBL:Q7VXC4" FT /protein_id="CAE42144.1" FT /translation="MSNNSPISIDGQRLWQSLMDLARIGATPKGGNCRLALTALDGQGR FT DLVTGWMRDAGLTVRVDQVGNIFARRAGRDPSRAPVMTGSHIDTQPTGGKFDGCYGVLA FT GLEVMRTLDDHGVQTDAPLEVAIWTNEEGSRFLPVMMGSGVFAGKFPLETALTARDAEG FT KSVADELRAIGYAGADPVGGRAVDAYFEAHIEQGPILEHEDRIVGVVTGSLGVRWYDVV FT VQGMEMHAGPTPMPIRKDALYAASHLLQAVVEIANAHQPHGRDTVGEIHAYPGSRNVIP FT GQVRFTVDLRHEDEATLATMDALWRQACADTAARHAVSVQCEQVQYFAPTPFHPDLVGK FT VRDGAQRRGLPAMDIVTGAGHDAVYMAAVAPTAMIFVPCKDGISHNEIEDAQPAHLEAG FT CNVLLDAMVARANAPR" FT misc_feature complement(215490..216026) FT /note="HMMPfam hit to PF01546, Peptidase family FT M20/M25/M40" FT misc_feature complement(216078..216101) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(216294..216383) FT /note="HMMPfam hit to PF01546, Peptidase family FT M20/M25/M40" FT CDS complement(216582..218291) FT /transl_table=11 FT /gene="ilvG" FT /locus_tag="BP1860" FT /product="acetolactate synthase large subunit" FT /EC_number="2.2.1.6" FT /note="Similar to Escherichia coli acetolactate synthase FT isozyme II large subunit IlvG or B3767 SW:ILVG_ECOLI FT (P00892) (548 aa) fasta scores: E(): 3.7e-41, 28.54% id in FT 522 aa, and to Rhizobium loti acetolactate synthase large FT subunit Mlr1615 TR:Q98K66 (EMBL:AP002997) (549 aa) fasta FT scores: E(): 4e-111, 51.8% id in 554 aa" FT /db_xref="GOA:Q7VXC3" FT /db_xref="HSSP:1JSC" FT /db_xref="InterPro:IPR012000" FT /db_xref="UniProtKB/TrEMBL:Q7VXC3" FT /protein_id="CAE42145.1" FT /translation="MTTPALPERNGGQILMQQLRVHGARRVFMIPGESYLPCIDALNEH FT RGAIDAIVCRQESGAAYMAEAYGKLTGEPGICFVTRGPGATNASIGVHTAYQDSTPMIL FT FIGQVGNDFMEREAFQEIDYRRMFGQMAKWVAQIDRTERIPEFIARAFAVATSGRPGPV FT VLALPEDTLWGRARVADMPRYRRARCLPGAADLARMVELLDQAKRPFMLLGGTGWSAEA FT IGQAAAFAERFELPVGTAWRRLECFDQRHPNAAGHVGWAMAPELRQRIAGADLVLAVGT FT RMGEATTEGYTVIESPLPRQRLVHVYPDPNELGRVFAPTLGIVADPAGFAAALDALRPG FT HRASRAQAVRAAHDEYLATLAPLPSPGPLNLDSAAAYVNQHIPADACITVGAGNYALYP FT HRYRQFSGPGTSLAPTVGAMGYGLPAAISAKLENPARTVVCYAGDGCFQMNMQELGVAL FT QYRVGVVVLVFNNGIWGTIRAHQEREFPGRAIALDFQNPDFTQFVRAYGGYGEAVERTE FT DFGPAFERARAFAEREQLPALLEIRYEADGIAPGQTLTEIRQAAQAQAAGVQ" FT misc_feature complement(216669..218237) FT /note="HMMPfam hit to PF00205, Thiamine pyrophosphate FT enzyme, central domain" FT CDS complement(218288..219226) FT /transl_table=11 FT /gene="citE" FT /locus_tag="BP1861" FT /product="citrate lyase beta chain" FT /EC_number="4.1.3.6" FT /note="Similar to Escherichia coli citrate lyase beta chain FT CitE or B0616 SW:CILB_ECOLI (P77770) (302 aa) fasta scores: FT E(): 4.8e-19, 31.48% id in 289 aa, and to Salmonella FT enteritidis CitE TR:AAK97548 (EMBL:AF376036) (280 aa) fasta FT scores: E(): 3.7e-18, 30.96% id in 281 aa" FT /db_xref="GOA:Q7VXC2" FT /db_xref="InterPro:IPR005000" FT /db_xref="UniProtKB/TrEMBL:Q7VXC2" FT /protein_id="CAE42146.1" FT /translation="MTPISNPGGQRRPASLRRSWMFVPGLLEQAQAAGLASGADALVAD FT LEEFTAPADRPAARRRIVALLAQCRAAGVIGAVRINKLEEDGLDDLRGIMAGAPDAIFL FT PHAESAAQIAALDRAISACEAEAGLAPGSTEIVPTLESALGVTRACEILTASPRVSACL FT LAAEDLTASLGAERGPDGIELHALRARFLVDCVAAGCLPIDCPFNYRDPAAQQADLLWA FT RRIGLKSKCAVFAEQVPAIHAAFTPDADRVAAARDLAARFEAQRDGRDAGGARVDPPDY FT NTARRLLARHAEFEQWAARAARPRESQGEQS" FT CDS complement(219223..220506) FT /transl_table=11 FT /locus_tag="BP1862" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti putative FT C4-dicarboxylate transport system, permease large protein FT transmembrane Smb21436 TR:CAC49665 (EMBL:AL603646) (426 aa) FT fasta scores: E(): 1.5e-80, 54.97% id in 422 aa, and to FT Caulobacter crescentus DedA family protein Cc1448 TR:Q9A8A6 FT (EMBL:AE005819) (426 aa) fasta scores: E(): 8.7e-55, 39.37% FT id in 419 aa" FT /db_xref="GOA:Q7VXC1" FT /db_xref="InterPro:IPR004681" FT /db_xref="UniProtKB/TrEMBL:Q7VXC1" FT /protein_id="CAE42147.1" FT /translation="MSTGALFLMGVFTVTVLIDMPIAFGLVLACLAYLAVYDAAPMMVA FT AQQYVVGLDSFTLLAIPLFILAAQLMNGAGLTQRIVRLCAAIVGDIKGGLAVVAVLACL FT MFGALSGSGVADVIAIGSLLLPAMARSGYDKGFSCALIGSAGATSTIIPPSIVLIVYGT FT ITDTSVGKLFLAGIIPGILLGASLIVVAIWQARKHNWAGGQPFSWGELRAAAIDALPAL FT MVPVLIIGGIRFGIFTATEAASSAIVYALLVGFFWYRTLSLKSLWESLKSTGEGSASIL FT LLIGASGLFAWVLVAEQVPQALSGLLVDWTDSKIAVLLVLTVVLLLLGTFMEAIPVIII FT VAPVVMPVLAHYNIDPVHFGILLSINMAIGANTPPVGVDLMAACKIGGINMMQTLRPLS FT WMMLAMTAVMLLLTFVPELVLFLPRHVQ" FT misc_feature complement(join(219247..219312,219373..219438, FT 219469..219561,219622..219678,219724..219780, FT 219796..219861,219922..219987,220024..220089, FT 220120..220176,220183..220248,220294..220359, FT 220396..220461)) FT /note="12 probable transmembrane helices predicted for FT BP1862 by TMHMM2.0 at aa 15-37, 49-71, 86-108, 110-129, FT 139-161, 173-195, 215-237, 242-261, 276-295, 315-346, FT 356-378 and 398-420" FT misc_feature complement(219631..220107) FT /note="HMMPfam hit to PF00597, DedA family" FT misc_feature complement(220420..220506) FT /note="Signal peptide predicted for BP1862 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.782) with cleavage site FT probability 0.234 between residues 29 and 30" FT CDS complement(220510..220992) FT /transl_table=11 FT /locus_tag="BP1863" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti putative FT C4-dicarboxylate transport system, permease small protein FT transmembrane Smb21437 TR:CAC49666 (EMBL:AL603646) (186 aa) FT fasta scores: E(): 1.7e-15, 40.13% id in 147 aa, and to FT Agrobacterium tumefaciens strC58 Agr_l_3346p TR:AAK90250 FT (EMBL:AE008369) (183 aa) fasta scores: E(): 1.8e-05, 27.04% FT id in 159 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VXC0" FT /protein_id="CAE42148.1" FT /translation="MLGRISHALSGLSKAIAALAVALLAALITYVVFERFVMHTTPHWA FT EELPRLVLVWAAFIGGVTCSHERTHLMAGLLPFVVRNPRALAISDRVNQALIIVGLAAL FT GYAGWQLAELTMDQTLPALDVSAGTVYLALPAACAITIVVHLAQLFQPADPVAAKD" FT misc_feature complement(join(220546..220611,220657..220707, FT 220894..220947)) FT /note="3 probable transmembrane helices predicted for FT BP1863 by TMHMM2.0 at aa 15-33, 95-112 and 127-149" FT misc_feature complement(220918..220992) FT /note="Signal peptide predicted for BP1863 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.973) with cleavage site FT probability 0.895 between residues 25 and 26" FT CDS complement(220993..221979) FT /transl_table=11 FT /locus_tag="BP1864" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti putative FT C4-dicarboxylate transport system, C4-dicarboxylate-binding FT protein precursor signal peptide Smb21438 TR:Q926B4 FT (EMBL:AL603646) (332 aa) fasta scores: E(): 1.1e-71, 56.44% FT id in 326 aa, and to Pasteurella multocida hypothetical FT protein Pm1252 TR:Q9CLH9 (EMBL:AE006164) (328 aa) fasta FT scores: E(): 6.7e-35, 33.75% id in 320 aa" FT /db_xref="GOA:Q7VXB9" FT /db_xref="InterPro:IPR018389" FT /db_xref="UniProtKB/TrEMBL:Q7VXB9" FT /protein_id="CAE42149.1" FT /translation="MQLTRTLTSLFAAAGLALAVAPAAHALDIKLGHVLAPSHSWNKAA FT EGFAAEVKEKTAGRVNLILFPSGQLGNEKTMLEGLQIGSQGAAIIGSGSLQPIEPKFGI FT VELPYTWTTSQQAYKAYDGELGAALAKLAEKKNLVIVSWWENGFRHLTNNRGPVNTPAD FT LNGLKTRVTPDKMRLDTFTALGANPAPLAFGELYSALQQKVFDAQENPLSIIYTSSFFE FT VQKYLSLTGHVWGPASLIVSKPIWNRISADDRKIVQAAADKWRDAQRQMITEGDLQFVA FT QLKEKGMQVNEVDKAPFAAAVAPIWKTYETAYGPELMGLLQKYREAK" FT misc_feature complement(221902..221979) FT /note="Signal peptide predicted for BP1863 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 26 and 27" FT CDS complement(222152..222871) FT /transl_table=11 FT /locus_tag="BP1865" FT /product="GntR-family transcriptional regulator" FT /note="Similar to Erwinia chrysanthemi exu regulon FT transcriptional regulator ExuR SW:EXUR_ERWCH (Q9X9E0) (259 FT aa) fasta scores: E(): 1.5e-19, 34.57% id in 214 aa, and to FT Rhizobium meliloti putative transcriptional regulator FT protein Smb20441 TR:CAC48823 (EMBL:AL603643) (246 aa) fasta FT scores: E(): 3.4e-23, 40% id in 235 aa" FT /db_xref="GOA:Q7VXB8" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VXB8" FT /protein_id="CAE42150.1" FT /translation="MGSFQAVAPTRLYRMIADQIAGRIRAGDFPAGGRLPAERELAEQL FT QVSRASVREALIALEIEGYVEVRVGTGVFVAAPRADGDYGVAPAPQPGHTDIGPFDLLD FT TRLLLEPECASLAAQKASPAQIAAISSAHAAMSLSDSPGAHDQAFHGAIAAACGNAALA FT AAISHIWHLSATSPVFSRLEQHFVTTKVWEAAEREHERILAAIVDRDPIRARHAMHDHL FT VGILARLREDFGSGAIR" FT misc_feature complement(222647..222826) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT misc_feature complement(222695..222769) FT /note="ScanRegExp hit to PS00043, Bacterial regulatory FT proteins, gntR family signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS complement(222988..223938) FT /transl_table=11 FT /locus_tag="BP1866" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q84CT8" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q84CT8" FT /protein_id="CAE42151.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT repeat_region 222988..223019 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(222988..224040) FT misc_feature complement(223024..223557) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(223615..223680) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(224009..224040) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(join(224037..224051,224057..224425)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1867" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 123. The frameshift occurs within FT a polymeric tract of (CGCGG)3. The sequence has been FT checked and believed to be correct. Similar to Rhizobium FT loti Mll7394 protein TR:Q986E6 (EMBL:AP003011) (120 aa) FT fasta scores: E(): 1.1e-17, 52.63% id in 114 aa, and to FT Streptomyces coelicolor hypothetical 13.8 kDa protein FT Sc2h2.18 TR:Q9F3D7 (EMBL:AL450289) (119 aa) fasta scores: FT E(): 4.2e-16, 43.1% id in 116 aa" FT /db_xref="PSEUDO:CAE42152.1" FT variation complement(224042..224056) FT /note="(CGCGG)3 in pertussis; (CGCGG)2 in parapertussis and FT bronchiseptica" FT CDS 224480..224695 FT /pseudo FT /transl_table=11 FT /locus_tag="BP1868" FT /product="putative cytochrome (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. The stop codon for this CDS is encoded FT within the IS481 element. Similar to Thiobacillus novellus FT C-type cytochrome SoxD precursor SoxD TR:Q9LAH4 FT (EMBL:AF139113) (84 aa) fasta scores: E(): 0.54, 35.55% id FT in 45 aa, and to Synechococcus sp CytM TR:Q9Z3G2 FT (EMBL:U39811) (145 aa) fasta scores: E(): 0.014, 39.06% id FT in 64 aa" FT misc_feature 224642..224659 FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT repeat_region 224708..225107 FT CDS <224712..225107 FT /transl_table=11 FT /locus_tag="BP1869" FT /product="transposase (partial)" FT /note="Partial CDS (truncated at the N-terminal region). FT transposase for IS481 element" FT /db_xref="GOA:Q7VXB7" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7VXB7" FT /protein_id="CAE42154.1" FT /translation="PDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAAL FT CHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWH FT RPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 224760..225071 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(225076..225107) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS join(225110..225289,225293..226321) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1870" FT /product="putative membrane protein (Pseudogene)" FT /note="Pseudogene. This CDS seems to be disrupted by the FT insertion of IS481 element, and contains an in-frame stop FT codon. The sequence has been checked and believed to be FT correct. Similar to Agrobacterium tumefaciens putative FT transmembrane protein DctM TR:Q9F7C8 (EMBL:AF282677) (416 FT aa) fasta scores: E(): 5.9e-53, 42.06% id in 378 aa, and to FT Rhizobium meliloti hypothetical protein Sma0151 TR:Q930W3 FT (EMBL:AE007202) (866 aa) fasta scores: E(): 3.5e-42, 36.48% FT id in 370 aa" FT /db_xref="PSEUDO:CAE42155.1" FT misc_feature 225194..225262 FT /note="1 probable transmembrane helix predicted for BP1870 FT by TMHMM2.0 at aa 29-51" FT variation 225290..225292 FT /note="In-frame TAG stop codon in pertrussis; TGG in FT parapertussis and bronchiseptica" FT misc_feature join(225344..225403,225440..225508,225551..225619, FT 225680..225748,225761..225817,225854..225922, FT 225950..226018,226037..226096,226109..226177, FT 226214..226282) FT /note="10 probable transmembrane helices predicted for FT BP1871 by TMHMM2.0 at aa 10-29, 42-64, 79-101, 122-144, FT 149-167, 180-202, 212-234, 241-260, 265-287 and 300-322" FT misc_feature 225440..225907 FT /note="HMMPfam hit to PF00597, DedA family" FT CDS join(226344..226589,226593..227063) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1871" FT /product="hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS contains an in-frame TAG stop FT codon. The sequence has been checked and believed to be FT correct. No significant database matches" FT /db_xref="PSEUDO:CAE42156.1" FT variation 226590..226592 FT /note="In-frame TAG stop codon in pertussis; CAG in FT parapertussis and bronchiseptica" FT CDS 227124..228473 FT /transl_table=11 FT /locus_tag="BP1874" FT /product="putative amidase" FT /note="Similar to Rhizobium meliloti putative amidase FT protein Smc03245 TR:CAC47672 (EMBL:AL591792) (435 aa) fasta FT scores: E(): 1.1e-55, 44.98% id in 429 aa, and to FT Agrobacterium tumefaciens StrC58 Agr_l_3143p TR:AAK90146 FT (EMBL:AE008359) (403 aa) fasta scores: E(): 2.7e-54, 45.88% FT id in 401 aa" FT /db_xref="GOA:Q7VXB6" FT /db_xref="InterPro:IPR000120" FT /db_xref="UniProtKB/TrEMBL:Q7VXB6" FT /protein_id="CAE42157.1" FT /translation="MLPTLKQQSLALQEGRDTSSGLTQAALARAADPAGEGARVFTRVY FT AEQARAEARAADALRAAGVTRSAIDGLPISIKDLFDVAGETTMAGSVARQGEPAAVRDA FT VVVRRLRAAGAVIVGRTNMTEFAYSGLGLNPHYGTPRNPWDRATGRIPGGSSSGAAVSV FT TDGMASGAIGSDTGGSVRIPAALCGLAGFKPSAQRVSMQGVLPLSANLDSIGPLAPSVR FT CCATLDAILAGGDDADMPAPAALRGLRLAVPTTLALDGLDAHVSATFAATLAKLAEAGA FT CIDEIAVPEFAQLADINSKGGFTAAEAWAWHRDLIERAADRYDPRVVARIRRGADMSAA FT DYIDLLAARQAWRAGVEARIAGYDALVLPTVPVVAPAIADLEASDALFGSTNLLILRNP FT TLINFLDGSALSLPCHEAGTAPVGLMVAAANGSDRRVLAIGMAIEDLLGG" FT misc_feature 227184..228434 FT /note="HMMPfam hit to PF01425, Amidase" FT CDS 228531..229325 FT /transl_table=11 FT /locus_tag="BP1875" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2116 TR:Q9I1Z9 (EMBL:AE004639) (265 aa) fasta FT scores: E(): 3e-59, 63.11% id in 244 aa, and to Bacillus FT subtilis hypothetical 28.1 kDa protein in sipU-kipI FT intergenic region YcsI SW:YCSI_BACSU (P42966) (257 aa) FT fasta scores: E(): 1.7e-57, 56.8% id in 257 aa" FT /db_xref="InterPro:IPR016938" FT /db_xref="UniProtKB/Swiss-Prot:Q7VXB5" FT /protein_id="CAE42158.1" FT /translation="MTILSLAGAGHQARLDARGGMLTGPTANLAPGHVQANLAILPQAV FT AGDFLRFCQRNPKPCPLLAVSEPGDPSLPELGLDIDIRTDVPRYRVWRDGKLVDEPLDV FT RGLWRDDLVAFLIGCSFSFEEAMLENGLPVRHIEQGCNVPMYRTNIATHPAGPFSGPLV FT VSMRPLKAADAIRAIQVTSRFPSVHGAPVHLGDPALIGIADLGRPDYGDAVEIRAGEIP FT VFWACGVTPQSVVAAVRPEFCITHAPGHMLVTDLLNSRLAAF" FT CDS 229459..230334 FT /transl_table=11 FT /gene="bvgR" FT /locus_tag="BP1876" FT /product="regulatory protein BvgR" FT /note="Previously sequenced as Bordetella pertussis BvgR FT TR:O85677 (EMBL:AF071567) (291 aa) fasta scores: E(): FT 5.1e-121, 100% id in 291 aa" FT /db_xref="InterPro:IPR001633" FT /db_xref="UniProtKB/TrEMBL:O85677" FT /protein_id="CAE42159.1" FT /translation="MIHWTNSARSSFEASLSPSRRTLRARLAPVEGPTVAELRAALKRD FT EFIPAFQPVVDAGTGSLFGVATTIQWAHRHWGLVPEHCYMAALVRDNLHIALAQQLLAQ FT VFDLAAAMRRGNRHVGLFIQPEPICLMSRSYSDDVLRNLDHRGLPPFALTLAVSPSLLQ FT SPYGQQSLHSLRRLHRAGCNLVLTVSTFDAESPPHLDALEICGIALMPELMYALRQGGR FT AGEACRAIAQQASAQRIPVMAAGVVDEAMAQAADLLPCRYLLGDHVAPPMTGQRFLYWY FT YRREMPPNYP" FT CDS complement(230378..234094) FT /transl_table=11 FT /gene="bvgS" FT /locus_tag="BP1877" FT /product="virulence sensor protein" FT /note="Previously sequenced as Bordetella pertussis FT virulence sensor protein BvgS precursor bvgS SW:BVGS_BORPE FT (P16575) (1238 aa) fasta scores: E(): 0, 99.83% id in 1238 FT aa" FT /db_xref="GOA:P16575" FT /db_xref="HSSP:1DCF" FT /db_xref="InterPro:IPR001789" FT /db_xref="UniProtKB/Swiss-Prot:P16575" FT /protein_id="CAE42160.1" FT /translation="MPAPHRLYPRSLICLAQALLAWALLAWAPAQASQELTLVGKAAVP FT DVEVALDGDDWRWLARKRVLTLGVYAPDIPPFDVTYGERYEGLTADYMAIIAHNLGMQA FT KVLRYPTREQALSALESGQIDLIGTVNGTDGRQQSLRLSVPYAADHPVIVMPIGARHVP FT ASNLAGQRLAVDINYLPKETLARAYPQATLHYFPSSEQALAAVAYGQADVFIGDALTTS FT HLVSQSYFNDVRVVAPAHIATGGESFGVRADNTRLLRVVNAVLEAIPPSEHRSLIYRWG FT LGSSISLDFAHPAYSAREQQWMADHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLL FT QLRTGLDFEIIGVDTVEELIAKLRSGEADMAGALFVNSARESFLSFSRPYVRNGMVIVT FT RQDPDAPVDADHLDGRTVALVRNSAAIPLLQRRYPQAKVVTADNPSEAMLMVANGQADA FT VVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRGQTELMSILNKALYSISNDE FT LASIISRWRGSDGDPRTWYAYRNEIYLLIGLGLLSALLFLSWIVYLRRQIRQRKRAERA FT LNDQLEFMRVLIDGTPNPIYVRDKEGRMLLCNDAYLDTFGVTADAVLGKTIPEANVVGD FT PALAREMHEFLLTRVAAEREPRFEDRDVTLHGRTRHVYQWTIPYGDSLGELKGIIGGWI FT DITERAELLRKLHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPTDQE FT PDRQSIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRVLPEGAIRVFDGLAR FT QKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLAVTARPDGDAAH FT VQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVM FT RSAPGVGTTVSVDLRLTMVEKSVQAAPPAAATAATPSKPQVSLRVLVVDDHKPNLMLLR FT QQLDYLGQRVIAADSGEAALALWREHAFDVVITDCNMPGISGYELARRIRAAEAAPGYG FT RTRCILFGFTASAQMDEAQRCRAAGMDDCLFKPIGVDALRQRLNEAVARAALPTPPSPQ FT AAAPATDDATPTAFSAESILALTQNDEALIRQLLEEVIRTNRADVDQLQKLHQQADWPK FT VSDMAHRLAGGARVVDAKAMIDTVLALEKKAQGQAGPSPEIDGLVRTLAAQSAALETQL FT RAWLEQRPHQDQP" FT misc_feature complement(230822..231178) FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain" FT misc_feature complement(231251..231601) FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, phytochrome-like ATPase" FT misc_feature complement(231740..231940) FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain" FT misc_feature complement(232157..232351) FT /note="HMMPfam hit to PF00989, PAS domain" FT misc_feature complement(232217..232240) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(232406..232471) FT /note="1 probable transmembrane helix predicted for BP1877 FT by TMHMM2.0 at aa 541-563" FT misc_feature complement(232511..233170) FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3" FT misc_feature complement(233999..234094) FT /note="Signal peptide predicted for BP1877 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.996) with cleavage site FT probability 0.816 between residues 32 and 33" FT CDS complement(234103..234732) FT /transl_table=11 FT /gene="bvgA" FT /locus_tag="BP1878" FT /product="virulence factors transcription regulator" FT /note="Previously sequenced as Bordetella pertussis FT virulence factors putative positive transcription regulator FT BvgA bvgA SW:BVGA_BORPE (P16574) (209 aa) fasta scores: FT E(): 3e-77, 100% id in 209 aa" FT /db_xref="GOA:P0A4H2" FT /db_xref="HSSP:1QMP" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/Swiss-Prot:P0A4H2" FT /protein_id="CAE42161.1" FT /translation="MYNKVLIIDDHPVLRFAVRVLMEKEGFEVIGETDNGIDGLKIARE FT KIPNLVVLDIGIPKLDGLEVIARLQSLGLPLRVLVLTGQPPSLFARRCLNSGAAGFVCK FT HENLHEVINAAKAVMAGYTYFPSTTLSEMRMGDNAKSDSTLISVLSNRELTVLQLLAQG FT MSNKDIADSMFLSNKTVSTYKTRLLQKLNATSLVELIDLAKRNNLA" FT misc_feature complement(234106..234297) FT /note="HMMPfam hit to PF00196, Bacterial regulatory FT proteins, luxR family" FT misc_feature complement(234163..234246) FT /note="ScanRegExp hit to PS00622, Bacterial regulatory FT proteins, luxR family signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature complement(234178..234243) FT /note="Predicted helix-turn-helix motif with score 1131 FT (+3.04 SD) at aa 164-185, sequence MSNKDIADSMFLSNKTVSTYKT" FT misc_feature complement(234388..234726) FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain" FT CDS 235159..245931 FT /transl_table=11 FT /gene="fhaB" FT /locus_tag="BP1879" FT /product="filamentous hemagglutinin/adhesin" FT /note="Previously sequenced as Bordetella pertussis FT filamentous hemagglutinin FhaB or BP1879 SW:FHAB_BORPE FT (P12255) (3591 aa) fasta scores: E(): 0, 99.91% id in 3573 FT aa. Also similar to Bordetella bronchiseptica adhesin FhaB FT TR:Q9JP78 (EMBL:AF111796) (3634 aa) fasta scores: E(): 0, FT 92.38% id in 3639 aa. The product of this CDS is also FT similar to B. pertussis BP2667 E(): 9.8e-120 37.940% FT identity in 2670 aa and BP2907 fasta scores: E(): 9e-125, FT 33.52% id in 2750 aa." FT /db_xref="GOA:P12255" FT /db_xref="InterPro:IPR012334" FT /db_xref="PDB:1RWR" FT /db_xref="UniProtKB/Swiss-Prot:P12255" FT /protein_id="CAE42162.1" FT /translation="MNTNLYRLVFSHVRGMLVPVSEHCTVGNTFCGRTRGQARSGARAT FT SLSVAPNALAWALMLACTGLPLVTHAQGLVPQGQTQVLQGGNKVPVVNIADPNSGGVSH FT NKFQQFNVANPGVVFNNGLTDGVSRIGGALTKNPNLTRQASAILAEVTDTSPSRLAGTL FT EVYGKGADLIIANPNGISVNGLSTLNASNLTLTTGRPSVNGGRIGLDVQQGTVTIERGG FT VNATGLGYFDVVARLVKLQGAVSSKQGKPLADIAVVAGANRYDHATRRATPIAAGARGA FT AAGAYAIDGTAAGAMYGKHITLVSSDSGLGVRQLGSLSSPSAITVSSQGEIALGDATVQ FT RGPLSLKGAGVVSAGKLASGGGAVNVAGGGAVKIASASSVGNLAVQGGGKVQATLLNAG FT GTLLVSGRQAVQLGAASSRQALSVNAGGALKADKLSATRRVDVDGKQAVALGSASSNAL FT SVRAGGALKAGKLSATGRLDVDGKQAVTLGSVASDGALSVSAGGNLRAKQLVSSAQLEV FT RGQREVALDDASSARGMTVVAAGALAARNLQSKGAIGVQGGEAVSVANANSDAELRVRG FT RGQVDLHDLSAARGADISGEGRVNIGRARSDSDVKVSAHGALSIDSMTALGAIGVQAGG FT SVSAKDMRSRGAVTVSGGGAVNLGDVQSDGQVRATSAGAMTVRDVAAAADLALQAGDAL FT QAGFLKSAGAMTVNGRDAVRLDGAHAGGQLRVSSDGQAALGSLAAKGELTVSAARAATV FT AELKSLDNISVTGGERVSVQSVNSASRVAISAHGALDVGKVSAKSGIGLEGWGAVGADS FT LGSDGAISVSGRDAVRVDQARSLADISLGAEGGATLGAVEAAGSIDVRGGSTVAANSLH FT ANRDVRVSGKDAVRVTAATSGGGLHVSSGRQLDLGAVQARGALALDGGAGVALQSAKAS FT GTLHVQGGEHLDLGTLAAVGAVDVNGTGDVRVAKLVSDAGADLQAGRSMTLGIVDTTGD FT LQARAQQKLELGSVKSDGGLQAAAGGALSLAAAEVAGALELSGQGVTVDRASASRARID FT STGSVGIGALKAGAVEAASPRRARRALRQDFFTPGSVVVRAQGNVTVGRGDPHQGVLAQ FT GDIIMDAKGGTLLLRNDALTENGTVTISADSAVLEHSTIESKISQSVLAAKGDKGKPAV FT SVKVAKKLFLNGTLRAVNDNNETMSGRQIDVVDGRPQITDAVTGEARKDESVVSDAALV FT ADGGPIVVEAGELVSHAGGIGNGRNKENGASVTVRTTGNLVNKGYISAGKQGVLEVGGA FT LTNEFLVGSDGTQRIEAQRIENRGTFQSQAPAGTAGALVVKAAEAIVHDGVMATKGEMQ FT IAGKGGGSPTVTAGAKATTSANKLSVDVASWDNAGSLDIKKGGAQVTVAGRYAEHGEVS FT IQGDYTVSADAIALAAQVTQRGGAANLTSRHDTRFSNKIRLMGPLQVNAGGAVSNTGNL FT KVREGVTVTAASFDNETGAEVMAKSATLTTSGAARNAGKMQVKEAATIVAASVSNPGTF FT TAGKDITVTSRGGFDNEGKMESNKDIVIKTEQFSNGRVLDAKHDLTVTASGQADNRGSL FT KAGHDFTVQAQRIDNSGTMAAGHDATLKAPHLRNTGQVVAGHDIHIINSAKLENTGRVD FT ARNDIALDVADFTNTGSLYAEHDATLTLAQGTQRDLVVDQDHILPVAEGTLRVKAKSLT FT TEIETGNPGSLIAEVQENIDNKQAIVVGKDLTLSSAHGNVANEANALLWAAGELTVKAQ FT NITNKRAALIEAGGNARLTAAVALLNKLGRIRAGEDMHLDAPRIENTAKLSGEVQRKGV FT QDVGGGEHGRWSGIGYVNYWLRAGNGKKAGTIAAPWYGGDLTAEQSLIEVGKDLYLNAG FT ARKDEHRHLLNEGVIQAGGHGHIGGDVDNRSVVRTVSAMEYFKTPLPVSLTALDNRAGL FT SPATWNFQSTYELLDYLLDQNRYEYIWGLYPTYTEWSVNTLKNLDLGYQAKPAPTAPPM FT PKAPELDLRGHTLESAEGRKIFGEYKKLQGEYEKAKMAVQAVEAYGEATRRVHDQLGQR FT YGKALGGMDAETKEVDGIIQEFAADLRTVYAKQADQATIDAETDKVAQRYKSQIDAVRL FT QAIQPGRVTLAKALSAALGADWRALGHSQLMQRWKDFKAGKRGAEIAFYPKEQTVLAAG FT AGLTLSNGAIHNGENAAQNRGRPEGLKIGAHSATSVSGSFDALRDVGLEKRLDIDDALA FT AVLVNPHIFTRIGAAQTSLADGAAGPALARQARQAPETDGMVDARGLGSADALASLASL FT DAAQGLEVSGRRNAQVADAGLAGPSAVAAPAVGAADVGVEPVTGDQVDQPVVAVGLEQP FT VATVRVAPPAVALPRPLFETRIKFIDQSKFYGSRYFFEQIGYKPDRAARVAGDNYFDTT FT LVREQVRRALGGYESRLPVRGVALVAKLMDSAGTVGKALGLKVGVAPTAQQLKQADRDF FT VWYVDTVIDGQKVLAPRLYLTEATRQGITDQYAGGGALIASGGDVTVNTDGHDVSSVNG FT LIQGRSVKVDAGKGKVVVADSKGAGGGIEADDEVDVSGRDIGIEGGKLRGKDVRLKADT FT VKVATSMRYDDKGRLAARGDGALDAQGGQLHIEAKRLETAGATLKGGKVKLDVDDVKLG FT GVYEAGSSYENKSSTPLGSLFAILSSTTETNQSAHANHYGTRIEAGTLEGKMQNLEIEG FT GSVDAAHTDLSVARDARFKAAADFAHAEHEKDVRQLSLGAKVGAGGYEAGFSLGSESGL FT EAHAGRGMTAGAEVKVGYRASHEQSSETEKSYRNANLNFGGGSVEAGNVLDIGGADINR FT NRYGGAAKGNAGTEEALRMRAKKVESTKYVSEQTSQSSGWSVEVASTASARSSLLTAAT FT RLGDSVAQNVEDGREIRGELMAAQVAAEATQLVTADTAAVALSAGISADFDSSHSRSTS FT QNTQYLGGNLSIEATEGDATLVGAKFGGGDQVSLKAAKSVNLMAAESTFESYSESHNFH FT ASADANLGANAVQGAVGLGLTAGMGTSHQITNETGKTYAGTSVDAANVSIDAGKDLNLS FT GSRVRGKHVVLDVEGDINATSKQDERNYNSSGGGWDASAGVAIQNRTLVAPVGSAGFNF FT NTEHDNSRLTNDGAAGVVASDGLTGHVKGDANLTGATIADLSGKGNLKVDGAVNAQNLK FT DYRDKDGGSGGLNVGISSTTLAPTVGVAFGRVAGEDYQAEQRATIDVGQTKDPARLQVG FT GGVKGTLNQDAAQATVVQRNKHWAGGGSEFSVAGKSLKKKNQVRPVETPTPDVVDGPPS FT RPTTPPASPQPIRATVEVSSPPPVSVATVEVVPRPKVETAQPLPPRPVAAQVVPVTPPK FT VEVAKVEVVPRPKVETAQPLPPRPVVAEKVTTPAVQPQLAKVETVQPVKPETTKPLPKP FT LPVAKVTKAPPPVVETAQPLPPVKPQKATPGPV |