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EBI DbfetchID BX640415; SV 1; linear; genomic DNA; STD; PRO; 347071 BP. XX AC BX640415; XX DT 09-AUG-2003 (Rel. 76, Created) DT 23-OCT-2008 (Rel. 97, Last updated, Version 6) XX DE Bordetella pertussis strain Tohama I, complete genome; segment 5/12 XX KW complete genome. XX OS Bordetella pertussis OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Bordetella. XX RN [2] RP 1-347071 RA Sebaihia M.; RT ; RL Submitted (06-AUG-2003) to the EMBL/GenBank/DDBJ databases. RL Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute, RL Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail: RL ms5@sanger.ac.uk XX RN [3] RA Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E., RA Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., RA Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A., RA Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I., RA Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., RA Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., RA Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., RA Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., RA Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., RA Barrell B.G., Maskell D.J.; RT "Comparative analysis of the genome sequences of Bordetella pertussis, RT Bordetella parapertussis and Bordetella bronchiseptica"; RL Nat. Genet. 35(1):0-0(2003). XX DR EMBL-CON; BX470248. DR RFAM; RF00169; SRP_bact. XX FH Key Location/Qualifiers FH FT source 1..347071 FT /organism="Bordetella pertussis" FT /strain="Tohama I" FT /mol_type="genomic DNA" FT /db_xref="taxon:520" FT CDS join(100..1953,1953..3071) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1322" FT /product="two-component sensor histidine kinase FT (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 618. The sequence has been checked FT and believed to be correct. Similar, over its C-terminal FT region, to Pseudomonas syringae histidine protein FT kinase-response regulator hybrid protein CvgsY TR:Q9WWH5 FT (EMBL:AF133263) (671 aa) fasta scores: E(): 2.6e-60, 38.48% FT id in 569 aa, and to Rhizobium loti two-component sensor FT histidine kinase mll8067 TR:Q984C1 (EMBL:AP003013) (1386 FT aa) fasta scores: E(): 7.7e-49, 41.6% id in 387 aa" FT /db_xref="PSEUDO:CAE41616.1" FT misc_feature 226..645 FT /note="HMMPfam hit to PF01590, GAF domain" FT misc_feature 766..849 FT /note="HMMPfam hit to PF00989, PAS domain" FT misc_feature 1546..1740 FT /note="HMMPfam hit to PF00989, PAS domain" FT misc_feature join(1942..1953,1953..2147) FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain" FT variation 1954 FT /note="C(-)G in pertussis; C(T)G in parapertussis and FT bronchiseptica" FT misc_feature 2268..2639 FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, phytochrome-like ATPase" FT misc_feature 2703..3041 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain" FT CDS complement(3062..5605) FT /transl_table=11 FT /locus_tag="BP1323" FT /product="probable alpha amylase" FT /note="Similar to Streptomyces coelicolor putative alpha FT amylase Scbac1a6.05C TR:Q9ADI2 (EMBL:AL589708) (805 aa) FT fasta scores: E(): 8.8e-23, 38.42% id in 864 aa, and to FT Pseudomonas aeruginosa probable glycosyl hydrolase Pa2162 FT TR:Q9I1V3 (EMBL:AE004643) (926 aa) fasta scores: E(): FT 4.1e-28, 45.05% id in 930 aa" FT /db_xref="GOA:Q7VYK3" FT /db_xref="HSSP:1IV8" FT /db_xref="InterPro:IPR013781" FT /db_xref="UniProtKB/TrEMBL:Q7VYK3" FT /protein_id="CAE41617.1" FT /translation="MIRATVRLQLHAGFTLDAAGAQLDYYDALGISHLYLSPVARARCG FT STHGYDVIDHAQVNPELGGLAALRRLAGAARARGMGLILDIVPNHMAAHPDNRWWREVL FT RDGPASAYADWFDIDWRPPGRTLRGRVLLPVLTCGARAALASGEIGLRAGSDGTPALHA FT NGLDLPLAPASLPMAALLLHHGGTPAQWHALLRAQAYRLAWWRSAAQAINWRRFFEIGD FT LVGVRVERPEVFDAVHALPLALYRAGLIDGLRIDHVDGLAEPGAYCRRLRAELAQAGQA FT RAARGLSAEPYVVVEKILGDKETLRTDWPVQGTTGYDFMNEASAWLHDARGAAPLAAFW FT RDNAGTWPHWREQLRRIRLRLLRRHFGAERRALARSLADLPELRASAAAIDPVLTQWLA FT CFPVYRTYAEGGAGQAADQAWRQTAQTRANAHLDPAQQALLAALCLALDGRMADAPHRL FT ALRRLQQLTPPLAAKALEDTWFYRDGTLLSRNEVGPAPAQFALGGGALRRSVAARARRH FT PQALLATASHDHKRGEDVRARLAVLSEMPQQWCDWARQWLADAGGSAAPPAWADRYMLL FT QTLVGAWPADLAPDDQAGMAALLRRVAAWQAKALREARQRSSWTCPDLAYETLCARYLR FT ALADDGAALPAVAALARRLAPAGLVNSLAQTALRLGLPGVPDLYQGCETWDLSLVDPDN FT RRAVDYAARRGALASLGNGALALPELWRDGRAKQALVARALQWRREQPALFEHGACRWL FT RVSGARARHVLACLRTRGPQQALIVVPRASALALAGQTGPDRDAAAHWRDTCVHLPADA FT PPWRDILTHAGHQGRALALSELLARWPVALCRVQS" FT misc_feature complement(4154..5593) FT /note="HMMPfam hit to PF00128, Alpha amylase, catalytic FT domain" FT CDS complement(join(5602..6576,6576..6896,6898..6975)) FT /pseudo FT /transl_table=11 FT /gene="malQ" FT /gene_synonym="malA" FT /locus_tag="BP1324" FT /product="putative 4-alpha-glucanotransferase (pseudogene)" FT /EC_number="2.4.1.25" FT /note="Pseudogene. This CDS appears to contain a deletion FT that has lead to a shift in reading frame around codon 133, FT and also appears to have a frameshift mutation following FT codon 26. The sequence has been checked and believed to be FT correct. Similar to Escherichia coli FT 4-alpha-glucanotransferase MalQ or MalA or B3416 FT SWALL:MALQ_ECOLI (SWALL:P15977) (694 aa) fasta scores: E(): FT 2.1e-25, 38.31% id in 327 aa" FT /db_xref="PSEUDO:CAE41618.1" FT variation complement(6576..6578) FT /note="large deletion relative to parapertussis and FT bronchiseptica" FT variation complement(6898..6900) FT /note="CGC(-) in pertussis; CGC(A) in parapertussis and FT bronchiseptica" FT CDS complement(6972..8726) FT /transl_table=11 FT /locus_tag="BP1326" FT /product="probable alpha amylase" FT /note="Similar to Sulfolobus shibatae maltooligosyl FT trehalose trehalohydrolase TreZ TR:Q9UWN9 (EMBL:AF201335) FT (559 aa) fasta scores: E(): 3.4e-50, 34.79% id in 500 aa, FT and to Pseudomonas aeruginosa probable glycosyl hydrolase FT Pa2164 TR:Q9I1V1 (EMBL:AE004643) (583 aa) fasta scores: FT E(): 3.1e-101, 53.79% id in 554 aa" FT /db_xref="GOA:Q7VYK2" FT /db_xref="HSSP:1EH9" FT /db_xref="InterPro:IPR013781" FT /db_xref="UniProtKB/TrEMBL:Q7VYK2" FT /protein_id="CAE41619.1" FT /translation="MNEPAPLGATVCAPGKIRFRLWAPSAPPALALEIEGRAPIALRPG FT PDGYAQAIVDGAPGLRYRYRLAADCVVPDPASRLQDGDVHGHSVVVGPDRYPWRHTGWR FT GRPWQDSVIYEAHAGLCGGYAGLRRRLPEVARLGVTLLELMPIADFPGPRNWGYDGVLP FT YAPDTAYGTPDELKALIDAAHGLEMGVMLDVVYNHFGPDGNYLHRYAADFFDARADTPW FT GAAIDYRQQAVQRYFIDNALYWLRKYRFDGLRLDAVHAMGRTDWLAGLAREARAACPDR FT RVHLVVENDANQASLLEQGFDAQWNDDAHHVLHHLLTGERQGYYADYAQAPAALLARAL FT GEGYVYQGQAAPTRGGRARGEPSAHLPPWAFVLFLHNHDQVGNRADGLRLTSLLAPGSP FT ALRAAIALQLLAPHIPLLFMGEEYGSTAPFFYFTSHGPELAAAVRAGRAREFAASMHDC FT DPPPDPNDPDTYRRSCPWPPPGAERQAWFEYYRELLRLRARLLGERLTGARADGAAALG FT PAAVRAAWRLGDGARLTLYANLLPGSVIVPAPPAGQLAYATLAGAGQDLVAGVLRGGCA FT LALWEPAP" FT misc_feature complement(7005..8393) FT /note="HMMPfam hit to PF00128, Alpha amylase, catalytic FT domain" FT CDS complement(8723..10843) FT /transl_table=11 FT /gene="glgX" FT /locus_tag="BP1327" FT /product="probable glycosyl hydrolase" FT /note="Similar to Escherichia coli glycogen operon protein FT GlgX or GlyX or B3431 SW:GLGX_ECOLI (P15067) (657 aa) fasta FT scores: E(): 5.3e-95, 47.25% id in 656 aa, and to FT Pseudomonas aeruginosa probable glycosyl hydrolase Pa2160 FT TR:Q9I1V5 (EMBL:AE004643) (716 aa) fasta scores: E(): FT 8.2e-151, 55.61% id in 712 aa" FT /db_xref="GOA:Q7VYK1" FT /db_xref="HSSP:1BF2" FT /db_xref="InterPro:IPR013781" FT /db_xref="UniProtKB/TrEMBL:Q7VYK1" FT /protein_id="CAE41620.1" FT /translation="MYPSLPDRLLPGLPAPLGATSDGLGVNFAVFSANAARIELCLFDA FT RGRKELARLPMPECTDEVWHGYLPDAQPGLVYGYRAHGPYNPRAGHRFNPHKLLLDPYA FT TALTGALRWSDALFGYRMQHPRADLSMDRRDSAAGVPKAVVTEPAFHWGATRRPAAAWA FT HTVIYEAHVRGVSMLRSDLREPIRGTCAALSDPRFIDHLHRLGVTALELMPVHAFLQDR FT TLVERGLRNYWGYNTLAYFAPEPAYLADGQPHDLRRAIRRLHAAGIEVILDVVYNHTCE FT GNELGPTLSWRGLDNASYYRLVPGDERRYIDDTGTGNTLNLSHPRVLQMVMDSLRHWAV FT HYRVDGFRFDLGVTLGREGTGFDAGSGFFDALLQDPVLARVKLISEPWDVGPDGYQLGR FT HPPGMAEWNDQFRDTARRFWRGDAGMAGALATRLTASRDVFDHRHRRPWSSINFAAAHD FT GFTLQDVVSFAERHNEANGEDGADGHGENYSSNWGVEGAASSAAIRETRARVQRALLAT FT VMLADGTPMLLAGDEFGNSQGGNNNAYCQDGPMGWLDWAVAQSTPGRALTAYAARLAGL FT RRAHPSLRATRYGDPAHQWQEGLGAIDWFNGRGAPMTSADWDAPEGRLLVLRRALPDPA FT QPGRVDVTLLLCNAAAEPRPCVLPAPTLAWTLALDSASPEAPAAPCDGGEAIVGARAVL FT LLTASVDGAHAP" FT misc_feature complement(8942..10348) FT /note="HMMPfam hit to PF00128, Alpha amylase, catalytic FT domain" FT CDS complement(10848..13043) FT /transl_table=11 FT /gene="glgB" FT /locus_tag="BP1328" FT /product="1,4-alpha-glucan branching enzyme" FT /EC_number="2.4.1.18" FT /note="Similar to Escherichia coli 1,4-alpha-glucan FT branching enzyme GlgB or B3432 SW:GLGB_ECOLI (P07762) (728 FT aa) fasta scores: E(): 5.4e-140, 50.88% id in 731 aa, and FT to Pseudomonas aeruginosa 1,4-alpha-glucan branching enzyme FT GlgB or Pa2153 TR:Q9I1W2 (EMBL:AE004642) (732 aa) fasta FT scores: E(): 1.3e-166, 59.07% id in 716 aa" FT /db_xref="GOA:Q7VYK0" FT /db_xref="InterPro:IPR013783" FT /db_xref="UniProtKB/Swiss-Prot:Q7VYK0" FT /protein_id="CAE41621.1" FT /translation="MMRDSPSIQGTLDAATQHALLAGRHADPFSVLGPHQAGAHTVVRV FT LAPGARTVMAVLPGGQRTPLLPMQPGLFENTVPGLQPGAPAAYRLCIEWEGGIQHTADP FT YAFGPVLDAAQLDHCAAGGWRYLAGLLGAHAASVDGCAGTRFALWAPNARRVAVVGDFN FT GWDGRRHAMRLRYPAGVWELFLPDVGPGARYKFQVLGADGHTVLKADPLARQAEAPPAT FT ASIVPDERPFAWTDKAWMEQRAARQRCDAPISIYEVHAGSWFDDAGAPRWQNLAARLPE FT YARSLGFTHIELLPVMAHPFGGSWGYQPLGLFAPAAAHGAPADFAHFVDRCHEAGLGVI FT LDWVPAHFPDDAHGLARLDGTPLYEHADPREGRHPDWNTLIYNYGRREVRTFLIASAIH FT WLRHYHVDGLRVDAVASMLYRDYSRPAGQWIPNRHGRRENLEAIDFLRELNAAVGVQCP FT GAITVAEESTAWPGVTAPVANGGLGFDYKWNMGWMHDTLRYMRRDPIHRRHHHHDLSFG FT MVYAYAERFVLPLSHDEVVHGKGSLLGKMPGERAAQLAQLRLYYAFMWAHPGKKLLFMG FT GEFGQQGEWNHDAMLQWSLLDDPAHRGLQRLVADLNHVYATLPELHCRDADPSGFAWIV FT GDDADNSVLAFARVDASHCLVAVCNFTPVPRPGYRFGVPHAGDWRVRVDTGATRYGGAG FT GGPPICLRSEPIPAHGHPQSLVLDLPGFTALYLRHSE" FT misc_feature complement(11028..12284) FT /note="HMMPfam hit to PF00128, Alpha amylase, catalytic FT domain" FT CDS complement(13040..16381) FT /transl_table=11 FT /locus_tag="BP1329" FT /product="alpha-glucosidase" FT /note="Similar to Pimelobacter sp trehalose synthase treS FT TR:P72235 (EMBL:D78198) (573 aa) fasta scores: E(): FT 2.4e-90, 58.22% id in 553 aa, and to Pseudomonas aeruginosa FT probable trehalose synthase Pa2152 TR:Q9I1W3 FT (EMBL:AE004642) (1100 aa) fasta scores: E(): 0, 58.35% id FT in 1107 aa" FT /db_xref="GOA:Q7VYJ9" FT /db_xref="HSSP:1M53" FT /db_xref="InterPro:IPR013781" FT /db_xref="UniProtKB/TrEMBL:Q7VYJ9" FT /protein_id="CAE41622.1" FT /translation="MPATHPAPDPLWYKDAVIYQLHVKSFFDANDDGVGDFAGLLAKLD FT YIVELGVNTIWLLPFYPSPRRDDGYDIADYRGVHPDYGSLADARLLVRAAHARGLRVIT FT ELVINHTSDQHPWFQRARAARPGSAHRAYYVWSDDDKAYAGTRIIFCDTEKSNWTWDPV FT AGAYFWHRFYSHQPDLNYDNPQVLREVLGAMRYWLDMGVDGLRLDAVPYLVEREGTNNE FT NLPETHAILRRIRRVIDSEYPGRMLLAEANQWPEDAQEYFGAGDECHMAFHFPLMPRMY FT MAIAQEDRLPVTDIIRQTPSIAPQCQWAIFLRNHDELTLEMVTSRERDYLWNVYAAEPR FT ARINLGIRRRLAPLLERDRRRIELMNSLLLSMPGTPVLYYGDELGMGDNIHLGDRDGVR FT TPMQWSPDRNGGFSRADPERLPLPLLMGPLYGYEAVNVEAQQRDPHSLLNWTRRMLAKR FT RQSHVFGRGELSFLYPGNRKILAYLRTWEDTVVLCVANLSQAAQPVELHLSEYAGRVPV FT EMLGGTAFPQIGELPYLLTLPPFGFYWLDLSAGAAPPAWHSELPPQMPESITLVSRGAG FT AALRLTEASRRQLEADVLPAYLQRQRWYAARRKPGVMRLAYSVPLNDDVESYYEAEIEV FT SDDGPPRRFHTPVALAWQDDTAAQYPLARVRRGAQLGTLTDASLQPGYARVLLAALTAG FT RDIQAGGEPAVRLRFLPEPGLADLALRDDSEVRALSADQSNSSLLVGERVVFKLLRELH FT AGPHPEAEMTRYLTQAGYAHTPALLGEVVRVQGDQAPHTLALAHAYVVNEGDAWNWTVA FT YLKRTLDAAILTGASADDYQQELAGYEVLAGTIGQRLAQMHSVLARAGELPGFAPRPAS FT ERDAALAGERAVAQLDRALQALRACESGLAPASHACAQWLFEHRDRLAAHIMTLAQAET FT GALRIRVHGDFHLGQILVAQTDAYLIDFEGEPARPMAERRQLSSPFKDVAGILRSFDYA FT VAELSRDDPLGGAPRDFNTGVAEPADPASAPRETREALLARFRQRAGAALLASYGNAID FT PVLALPPERAQALTCLYLLEKAAYEICYESAYRPERLPVPIHGLAETARAALLAAAVDH FT DEGPAP" FT misc_feature complement(14993..16333) FT /note="HMMPfam hit to PF00128, Alpha amylase, catalytic FT domain" FT CDS complement(join(16393..17955,17955..19085)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1330" FT /product="putative alpha-amylase (pseudogene)" FT /note="Pseudogene. This CDS appears to be disrupted by the FT insertion of IS481 element, and contains a frameshift. FT Similar to Ralstonia solanacearum putative FT alpha-amylase-related protein Rsp0241 or Rs05182 FT SWALL:Q8XT74 (EMBL:AL646077) (1201 aa) fasta scores: E(): FT 4.1e-131, 47.79% id in 998 aa" FT misc_feature complement(16420..16485) FT /note="Predicted helix-turn-helix motif with score 983 FT (+2.53 SD) at aa 481-502, sequence ASWREAALDLELTPQRPYRLWR" FT misc_feature complement(16531..17772) FT /note="HMMPfam hit to PF00128, Alpha amylase, catalytic FT domain" FT misc_feature complement(17044..17073) FT /note="ScanRegExp hit to PS00019, Actinin-type FT actin-binding domain signature 1." FT repeat_region 19082..19113 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 19082..20134 FT CDS 19184..20134 FT /transl_table=11 FT /locus_tag="BP1332" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA8" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA8" FT /protein_id="CAE41624.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHR" FT misc_feature 19442..19507 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 19565..20098 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(20103..20134) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(20114..20203) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1332A" FT /product="conserved hypothetical protein (pseudogene)" FT /note="This CDS is disrupted by the insertion of IS481. FT Similar to The N-terminus of Pseudomonas aeruginosa FT hypothetical protein Pa2244 SWALL:Q9I1M5 (EMBL:AE004650) FT (333 aa) fasta scores: E(): 0.2, 66.66% id in 21 aa" FT /db_xref="PSEUDO:CAE41625.1" FT CDS complement(20200..20379) FT /transl_table=11 FT /locus_tag="BP1333" FT /product="hypothetical protein" FT /note="no significant database matches." FT /db_xref="UniProtKB/TrEMBL:Q7VYJ8" FT /protein_id="CAE41626.1" FT /translation="MKPTPTSQDRKQDDDTQREAQRSHGSQQARTKKDGHVSQIGSNQD FT QSSQRNRGQGARRS" FT CDS complement(20496..21218) FT /transl_table=11 FT /locus_tag="BP1334" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2168 TR:Q9I1U7 (EMBL:AE004644) (258 aa) fasta FT scores: E(): 8.8e-66, 65% id in 240 aa" FT /db_xref="GOA:Q7VYJ7" FT /db_xref="InterPro:IPR002471" FT /db_xref="UniProtKB/TrEMBL:Q7VYJ7" FT /protein_id="CAE41627.1" FT /translation="MFDTQVAGTLLTPRAKLPGVLFVHGWGGNQRFDLSRARDIAGLGC FT ICLTFDLRGHAATEAQRRQVTREDSLRDIMAAYDALIAHPAVDTSAIAVVGSSYGGYLA FT AILTTLRAVRWLALHVPALYRDDEWAQPKLQLDRAAISAYRHATVAPEGNRALSACSSF FT RGDVLIVEAEHDDYIPHSTIMSYRGAFLHSHSLTHRIVDGADHALSDKRCQQAYSSILL FT NWATEMVVGARVGAGRPA" FT misc_feature complement(20910..21002) FT /note="ScanRegExp hit to PS00708, Prolyl endopeptidase FT family serine active site. Confirmed by InterPro eMOTIF FT pattern match." FT misc_feature complement(20910..21005) FT /note="HMMPfam hit to PF00326, Prolyl oligopeptidase FT family" FT CDS complement(21238..22383) FT /transl_table=11 FT /locus_tag="BP1335" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2167 TR:Q9I1U8 (EMBL:AE004644) (365 aa) fasta FT scores: E(): 2.1e-39, 41.48% id in 364 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VYJ6" FT /protein_id="CAE41628.1" FT /translation="MNPAAAVPRRPVDLVVAHPGRRDAPRHERASLRALGLDIAELLGC FT EYADALPAAARDPRLRVYYVPARTLLDGRALALGIQGPDDLFGGVAPHGFVATKAITHA FT LPHDGCAAPAAWSRELGARLSDCVLPGCTVFALDEARQGGARMLRTSALRVKPVRATAG FT RGQRKVADAAALDQALAEQDAGEVRRYGLVLEEHLEDISTYSVGVAQVGVHLASYIGTQ FT SLTLDHAGLEVYGGSDLWFVSGPLPALLQLELDAPRRTALEHAMRYDEQAFACYPRLYA FT SRRNYDVARGRDAQGRWRTGVLEQSWRAGGASLAEIAALRAFAQGGGLRRAHAATSEHY FT GPDPAHPPGTRIVFHAHDAEVGFISKAGGMTQDNGTDDDDT" FT CDS complement(join(22437..23189,24238..24432)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1338" FT /product="putative membrane protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Pseudomonas aeruginosa FT hypothetical protein Pa2154 TR:Q9I1W1 (EMBL:AE004642) (331 FT aa) fasta scores: E(): 9.5e-38, 44.44% id in 306 aa, and to FT Escherichia coli hypothetical protein YbhN or b0788 FT SW:YBHN_ECOLI (P75770) (318 aa) fasta scores: E(): 6.6e-36, FT 37.77% id in 315 aa" FT /db_xref="PSEUDO:CAE41629.1" FT misc_feature complement(join(22470..22535,22599..22664,22695..22760, FT 22821..22886,22932..22997,23061..23126)) FT /note="6 probable transmembrane helices predicted for FT BP1336 by TMHMM2.0 at aa 49-71, 92-114, 129-151, 171-193, FT 203-225 and 246-268" FT repeat_region 23192..24241 FT CDS 23291..24241 FT /transl_table=11 FT /locus_tag="BP1337" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA8" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA8" FT /protein_id="CAE41630.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHR" FT misc_feature 23549..23614 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 23672..24205 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(24210..24241) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT misc_feature complement(24337..24393) FT /note="1 probable transmembrane helix predicted for BP1338 FT by TMHMM2.0 at aa 13-32" FT CDS complement(24429..25631) FT /transl_table=11 FT /locus_tag="BP1339" FT /product="probable phospholipase" FT /note="Similar to Pseudomonas aeruginosa probable FT phospholipase Pa2155 TR:Q9I1W0 (EMBL:AE004642) (401 aa) FT fasta scores: E(): 3.6e-84, 58.2% id in 390 aa, and to FT Escherichia coli hypothetical protein YbhO or B0789 or FT Z1008 or Ecs0867 SW:YBHO_ECOLI (P75771) (413 aa) fasta FT scores: E(): 1.4e-81, 52.68% id in 391 aa" FT /db_xref="GOA:Q7VYJ5" FT /db_xref="InterPro:IPR001736" FT /db_xref="UniProtKB/TrEMBL:Q7VYJ5" FT /protein_id="CAE41631.1" FT /translation="MSTPWRDGNRFAILENGASYFPRVYTAIGKAREEILIETFILFDD FT AVGRELREALMAAARRGVRIDVTVDGYGSDSLPPDFIAGLVELGVGFHVFDPRPRLLGM FT RTNLFRRLHRKIVAIDGTLAYVGGLNFSADHLDDYGPQSKQDYAIEIAGPLAADIRDFA FT RAALAAVPRRRWRRARPAAPPQAAGPARARLVVRDNDQHTNDIEQSYRVAIRAARRDIV FT IANAYFFPGYRLLRDLRAAAARGVRVRLILQGEPDMPIAQLGARLLYDALAEAGVEILE FT YCERPLHGKVASIDDEWATVGSSNLDPFSLALNLEANVEVRDSAFASGLRERLERLAID FT HCRPAPQSDGAGRQLRRLFAGALVYHFLRRFPAWAGSLPAHKPRIQTLRPDGQGQPDEA FT T" FT misc_feature complement(24702..24785) FT /note="HMMPfam hit to PF00614, Phospholipase D. Active site FT motif" FT misc_feature complement(25227..25310) FT /note="HMMPfam hit to PF00614, Phospholipase D. Active site FT motif" FT CDS complement(25628..26386) FT /transl_table=11 FT /locus_tag="BP1340" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2156 TR:Q9I1V9 (EMBL:AE004642) (245 aa) fasta FT scores: E(): 2.2e-62, 63.93% id in 244 aa, and to FT Escherichia coli hypothetical protein YbhP or B0790 or FT Z1009 or Ecs0868 SW:YBHP_ECOLI (P75772) (253 aa) fasta FT scores: E(): 2.8e-53, 53.72% id in 255 aa. Also similar to FT BP0710, 37.801% identity (46.610% ungapped) in 291 aa FT overlap." FT /db_xref="InterPro:IPR005135" FT /db_xref="UniProtKB/TrEMBL:Q7VYJ4" FT /protein_id="CAE41632.1" FT /translation="MPPEPIRLRILTVNAHKGFTSFNRRFILHELREALREARPDLVFL FT QEVLGEHQRHAARHARWPAVSQYEFLADTLWSAYAYGRNAVYPDGHHGNAVLSKYPIVS FT HRNEDLSVGAAHEPRGMLHCVLDVRDAPAPLHALCVHLGLREAHRQEQLRRLCQYLRQH FT VPAQAAALLAGDFNDWRQRADATLARCGLADVHRLALGHAARTFPAACPLLRLDRIYVR FT NVAGSEPRRLSRRPWSRLSDHVPLAAEVTL" FT CDS join(26480..26641,26643..26672) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1341" FT /product="hypothetical protein (pseudogene)" FT /note="no significant database matches" FT /db_xref="PSEUDO:CAE41633.1" FT CDS 26780..27412 FT /transl_table=11 FT /locus_tag="BP1342" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti Mll2459 protein Mll2459 FT TR:Q98ID0 (EMBL:AP002999) (180 aa) fasta scores: E(): FT 2.1e-16, 41.11% id in 180 aa, and to Escherichia coli FT hypothetical protein YqjI or B3071 SW:YQJI_ECOLI (Q46872) FT (207 aa) fasta scores: E(): 7e-11, 41.54% id in 142 aa" FT /db_xref="InterPro:IPR005149" FT /db_xref="UniProtKB/TrEMBL:Q7VYJ3" FT /protein_id="CAE41634.1" FT /translation="MHPFHVFAMSAHGGRGGGHAGGRHGGGHGAGGDGPDWRRGRKFSA FT DDLQLMILALLDEGPSHGYELIKALGARSRGFYTPSPGMVYPTLTWLEEAGHATVSQDG FT ARKHYHLAEPGRAHLQANRERVTLLMAQLAHVGRKMEWMRRAWAGQPIETGSEGEDLAT FT GWLPEYVQARMALKQALARHADATPARQRQLAAILARAAAELDDLSS" FT CDS join(27438..27800,27796..28206) FT /pseudo FT /transl_table=11 FT /gene="mxcB" FT /locus_tag="BP1343" FT /product="iron utilization protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation around codon 121. The sequence has been checked FT and believed to be correct. Similar to Stigmatella FT aurantiaca MxcB TR:Q9F641 (EMBL:AF299336) (270 aa) fasta FT scores: E(): 2.4e-21, 45.92% id in 270 aa, and to FT Escherichia coli hypothetical protein YqjH or B3070 FT SW:YQJH_ECOLI (Q46871) (254 aa) fasta scores: E(): 5.2e-21, FT 39.44% id in 251 aa" FT /db_xref="PSEUDO:CAE41635.1" FT variation 27798..27800 FT /note="~27 bp deletion in pertussis; ~27 bp insertion in FT parapertussis and bronchiseptica" FT CDS 28368..30968 FT /transl_table=11 FT /locus_tag="BP1344" FT /product="autotransporter" FT /note="Similar to Agrobacterium tumefaciens Agr_pat_528p FT TR:AAK90738 (EMBL:AE007905) (921 aa) fasta scores: E(): FT 4.8e-42, 33.19% id in 931 aa, and to Bordetella pertussis FT BapA protein bapA TR:Q9F4B4 (EMBL:AJ277632) (903 aa) fasta FT scores: E(): 1.3e-18, 29.75% id in 894 aa" FT /db_xref="GOA:Q7VYJ2" FT /db_xref="InterPro:IPR003991" FT /db_xref="UniProtKB/TrEMBL:Q7VYJ2" FT /protein_id="CAE41636.1" FT /translation="MRSARRRTPARLAPLPAMLAAAGLLQSLGATPAAAACAPTLAPAS FT GQSVQCDGAVVNQSVEAAAGSQNVTITVAPGALFSTNATRALSVDDRSRIVNEGTIQMA FT GGAGASRGAMVGFGDNNQLINRGSITTSGSGVRGISVPNVGSTGTLVDNSGSIRTQGAS FT AHGIAINGPGNRVQNSGAITVNGTDAKGVYLQGGSPAANVLVNGGTIHARGASSNGIFG FT PDGVHVNTTNANGFHARVENLPGGRILSDHSYALRGQNGNDTFINAGYLQGHGGAGRDT FT AVYMGPQGTGTLILRTGSAIAGLADGGGAASHAYLEGSGTVDNRFANFRTLTMRGADWR FT WTSDAAFTESVDLRTGTFFLAGTLASPANRLAAGAVLAGTGTLAGALRNAGEIRPGPND FT GSGYGALTVRGDYTGAGGALRVNTVLAGDGAASDRLVIDGGHAGGSTPVTVVNRGGQGA FT LTAADGILVVQAINGASSDAGAFSLAAPLNAGAYEYRLYRGGATGAAPDSWYLRSRAYL FT VEDQLAGSLAEAEAIADDIGRRTGERPSIEDTPLYRPEVALYSSIPMLARRMGLAQLGT FT FHERQGNQALLARDGERVAAWARAYGGNSKQALDGDAQPGIDARLAGVQLGQDLYSSVR FT PDGGQHRFGLFGGYGQARGDTHGSAGGERDAATGRLTIDGYSVGGYWTYVGPRGWYVDA FT VLANTWMDIDTDSKAGRDADTRGQAFTASLESGYPLALSERWTLEPQAQLIYQHTRVDG FT FSDAVSEVRIRDDNALTARLGARLQGEYAAAAQVWRPYAALNFWRTFSGENTVVLGEDS FT IDTRRGATSLELAAGASVTLARSLALYGRLAYATSIDSQYLRGASAQLGMRYTW" FT misc_feature 28368..28475 FT /note="Signal peptide predicted for BP1354 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.539 between residues 35 and 36" FT CDS complement(30956..34375) FT /transl_table=11 FT /locus_tag="BP1345" FT /product="conserved hypothetical protein" FT /note="Similar to Mycobacterium tuberculosis hypothetical FT 123.1 kDa protein Rv1251c or Mtv006.23C TR:O50466 FT (EMBL:AL021006) (1139 aa) fasta scores: E(): 3e-51, 37.83% FT id in 1171 aa, and to Mycobacterium leprae hypothetical FT protein Ml1098 TR:Q9CC95 (EMBL:AL583920) (1152 aa) fasta FT scores: E(): 2.9e-45, 36.9% id in 1176 aa" FT /db_xref="InterPro:IPR019993" FT /db_xref="UniProtKB/TrEMBL:Q7VYJ1" FT /protein_id="CAE41637.1" FT /translation="MQQLGATRRYAASDLVGFLACEHLTQLDLRALDAGQAPAAADDEQ FT MALVQAKGQAHEQAWLERLRARHPDLADVTRAGPDLAARLAATRAAMAAGAPVIYQAAL FT CHGPYVGHADFLLRTECPSALGDYGYEALDTKLARSPRASFVLQLSFYAWLLEHAQGVA FT PRSMHVVLGSGRELALRVADYAHYLRQVLRRFEAAIAAEPAPPTYPEPCEHCPQCRWRV FT ACEARRVADDHLSLVAGMSRQQARRLNAQGVATLAQLGALPEHAQVAGIEAGTLQRLRA FT QAALQWRARVDGARHYELLAAQDEGPRGLARLPRPDPGDMFFDMEGDPLEDGGLEYLFG FT LYVIDDGAERFVPFWAHDRRQEKQAFEAFMDFVAERLRRHPDAHIYHYAPYEATALKKL FT MSLHGTREAEVDHLLRAGKLVDLYRVVREGLRISEPSYSIKYVERFYLPRRAGEVTNAG FT ASIVYYERWKATDEPRLLQDIADYNRDDVISTWRLRDWLCGIRPAALPWHNEAGQQDLD FT AARAVIGEMTEAERRLLPYRAALADDLPADEAAWSPRDAFRALAWHLLDFHRREQKPAW FT WAWFARAEATDGELIEDAECLGGLARDDAAPPVRQAQSLRYTYRYPAQETKLRTGARCT FT DVRTGASLANLVVDPHARLASFTCSARKPAPPPRMALGPAAPVNNKELVNAVFRYGDAV FT CRAPDGMSMPMRAVDALLRREPPRIRGLARGAPLVAPHAELLPQVLDVVARMDETTLFL FT QGPPGAGKTYTGSRVLLQLLRAGRRVAVSSNSHHAINNLLRGLERLAEREGFALRGAKK FT STSAGDDSCLGGAQIEDVFDNKDVDPARHQLVAGTAWLFARPEFEQAFDYLFVDEAGQV FT SLANLVAMGQCARNIVLLGDQMQLGQPSQGTHPGRSGESALDYLLDGQATIAASQGVFL FT DTSYRMHPEICGFISEAIYDGRLRAAPATAAHRLLLDEAAGRELPAHGIRYVPVPHDGN FT TQSSREEAARVAELCALLLRQRHVDEAGAPAPLTLDDILFVAPYNVQVNTLRAALPDGA FT RVGTVDKFQGQEAQVVIVSMATSSGDYLPRDLEFLFSRNRLNVAISRARTLAILVASPA FT LTAVRCRSAEQMALVNTLCWVAETGSASPYQV" FT misc_feature complement(32090..32113) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(34383..35288) FT /transl_table=11 FT /locus_tag="BP1346" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa2417 TR:Q9I164 (EMBL:AE004669) FT (312 aa) fasta scores: E(): 4.1e-55, 52.72% id in 294 aa, FT and to Rhizobium meliloti putative transcription regulator FT protein Smc01570 TR:CAC46900 (EMBL:AL591790) (296 aa) fasta FT scores: E(): 6.3e-42, 41.69% id in 295 aa" FT /db_xref="GOA:Q7VYJ0" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VYJ0" FT /protein_id="CAE41638.1" FT /translation="MQDLNDLYYFVQTVDHRGFAPAGRALGMPKSKLSRRIAVLEERLG FT VRLIQRSTRHFSVTDIGQTYYEHCKAMLVEAEAAQEAIDAAQVEPRGVVRLSCPVALLH FT THVGAMLGEFMLRYPRVTLHLDASNRRVDVLGEGVDVAIRVRPPPLENSDLVMRPFADR FT GQCLVASPALLARHGAPALPADLAAWPRLALGLPNQPHSWLLTGPQGAQATVPLAPRMV FT TTDMLALRSAAVAGVGVVQLPSMMVRGQLADGTLVRLLPEWAPCRELIHAVFPSRRGLL FT SSVRTLVDFLAERFAALQEG" FT misc_feature complement(34860..35279) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(35175..35240) FT /note="Predicted helix-turn-helix motif with score 1152 FT (+3.11 SD) at aa 17-38, sequence RGFAPAGRALGMPKSKLSRRIA" FT CDS 35427..36005 FT /transl_table=11 FT /locus_tag="BP1347" FT /product="putative reductase" FT /note="Similar to Rhizobium loti Mll5191 protein Mll5191 FT TR:Q98CD9 (EMBL:AP003005) (203 aa) fasta scores: E(): FT 4.2e-35, 52.17% id in 184 aa, and to Streptomyces FT coelicolor putative reductase Scah10.16 TR:Q9RKU1 FT (EMBL:AL132824) (185 aa) fasta scores: E(): 1.8e-21, 40.32% FT id in 186 aa" FT /db_xref="InterPro:IPR005025" FT /db_xref="UniProtKB/TrEMBL:Q7VYI9" FT /protein_id="CAE41639.1" FT /translation="MARLHIIICSTRPGRVGPAVADWFHAQALAHGGFEVALVDLAQVG FT LPLYDEPRHPMLQQYEHAHTRAWSRSVASADAFVFVTPEYNYGPPPALVNALNYVYKEW FT NYKPAAFVSYGGVSGGMRAVQAEKQTLTTLRMVPIFEYVAIPMVAERLDAAGRFQPQPI FT HDSMAQGLLTELRRFSDALQVLREPASTP" FT CDS 36002..36913 FT /transl_table=11 FT /gene="citE" FT /locus_tag="BP1348" FT /product="putative citrate lyase beta chain" FT /EC_number="4.1.3.6" FT /note="Similar to Leuconostoc mesenteroides citrate lyase FT beta chain CitE SW:CILB_LEUMC (O53078) (302 aa) fasta FT scores: E(): 1.8e-26, 35.06% id in 288 aa, and to FT Caulobacter crescentus citrate lyase beta subunit, putative FT Cc3659 TR:Q9A2A7 (EMBL:AE006024) (295 aa) fasta scores: FT E(): 1.3e-42, 47.22% id in 288 aa" FT /db_xref="GOA:Q7VYI8" FT /db_xref="InterPro:IPR005000" FT /db_xref="UniProtKB/TrEMBL:Q7VYI8" FT /protein_id="CAE41640.1" FT /translation="MIPDPATAPSMNPTQTTNPMRPFRSVLYTPGANARALARARELDA FT DALILDLEDAVAVSAKEEARVQVTHALREGGFGRRSVIVRVNGLDTPWGEDDVRALAPL FT GPHAMLLPKVEHPAQLARAAALAAEAGAPGLAWWAMIETPLAILNIGAIAAAGAPLRAL FT VAGTSDLVKALHARHTPARAEVQAALSMTVLAARAHGLLALDGVHLDLADAEGLRHACR FT QGRDLGFDGKTLIHPRQIDSANAAFGPSEAEVVRAHAIMAAWQDAQAHGAGVTVVDGML FT VEALHVEDAQRVLALAQAIAAD" FT CDS complement(36927..37607) FT /transl_table=11 FT /locus_tag="BP1349" FT /product="putative GntR-family transcriptional regulator" FT /note="Similar to Rhizobium meliloti putative FT transcriptional regulator, GntR family protein Smb20773 FT TR:CAC49865 (EMBL:AL603647) (228 aa) fasta scores: E(): FT 4.7e-14, 35.29% id in 204 aa, and to Pseudomonas aeruginosa FT probable transcriptional regulator Pa0797 TR:Q9I5E1 FT (EMBL:AE004515) (240 aa) fasta scores: E(): 1.8e-13, 31.28% FT id in 211 aa" FT /db_xref="GOA:Q7VYI7" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VYI7" FT /protein_id="CAE41641.1" FT /translation="MTGTSKPNATSGSTLEYVVDTLRQGILSGRLVPGQRLVEADLTRQ FT LGVSRGPVRESFRRLSAEGLVESIPNQTTMVRRYSKAEMLELFEIRAELEALAARRAAE FT CMDDPAAKARFLQAIGPIWDEHSLAAGPSYFDENRRFHQAIADLSANTQLAELIRKLQL FT PLIMFQLGGAITPQAIQASIDEHRRIAQAIVDGNRRKAAAEVKAHLKRACEMVERMPPD FT IFRP" FT misc_feature complement(37380..37556) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT misc_feature complement(37428..37502) FT /note="ScanRegExp hit to PS00043, Bacterial regulatory FT proteins, gntR family signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature complement(37434..37499) FT /note="Predicted helix-turn-helix motif with score 982 FT (+2.53 SD) at aa 37-58, sequence LVEADLTRQLGVSRGPVRESFR" FT CDS 37809..39848 FT /transl_table=11 FT /locus_tag="BP1350" FT /product="putative acetyl-CoA synthetase" FT /note="Similar to Giardia lamblia acetyl-CoA synthetase FT TR:Q9Y1N2 (EMBL:AF107206) (726 aa) fasta scores: E(): FT 8.7e-33, 27.75% id in 735 aa, and to Archaeoglobus fulgidus FT conserved hypothetical protein Af1211 TR:O29057 FT (EMBL:AE001020) (685 aa) fasta scores: E(): 1.6e-41, 31.98% FT id in 691 aa" FT /db_xref="GOA:Q7VYI6" FT /db_xref="HSSP:1IUK" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VYI6" FT /protein_id="CAE41642.1" FT /translation="MNAVQRIGKLLNPSSIAIVGASPAPNKLAGQLIPALREGGYEGAI FT YPVNPRYQEVAGLRCFASVGDIPDEVDHCVIVVGKERVPQVLRDCCAKQVPGASIYISG FT YAEASGDGREAQRALEEAASALTFIGPNCMGFSNLTARVMAAPSAVLKRAEGVGDVALV FT SQSGGLAYATMAYYAQRDGLGFSHIVNTGNSAGVSYSDLIEYMFQDPATRVVLAVAEAE FT RAACEVIDAVHRLGLRKPVVLLKLGRGQTGTRMALSHTGSLAGDYRLVRDVAEQHGIAC FT ADDVDQVLGLCELLRHGFGAEHAEGIASLCISGGNITLFADQADAHGLGFAELDAATEA FT RLTAVLPDYISVHNPIDITALGYENPALHADVLDVLLTDAAVRTVVPILTTVDDYTEVC FT RLLADVRARTRCAMIALWNGGSYETRSREILREAAIPVFHSAALLAACLQRLRRAAGRR FT APMQAASAAPVADGALRALRESEAMQWLAGHGVAVPPLRACARAGLAEAAREVGYPLVI FT KADSADTHISDQDSVILNIRNDGELAQALERVAGWPDERVLAMRYLPGQELVAGVLAHP FT QLGQVLMVGSGGQWVELLKDVRFAALPASRDELADALAGTLVGRALHARFRGAAGFDEA FT VGLLAALAEAAVRAGPQVAQIELNPVTVGRHGAVAVDAAVYLRA" FT misc_feature 37836..38183 FT /note="HMMPfam hit to PF02629, CoA binding domain" FT CDS join(39867..39878,39880..40854) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1351" FT /product="putative exported protein (pseudogene)" FT /note="Similar to Comamonas testosteroni OrfJ protein FT TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 9.3e-35, 38.08% id in 323 aa, and to Rhizobium meliloti FT conserved hypothetical protein Sma1927 TR:AAK65716 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 1.8e-32, 35.71% FT id in 308 aa" FT /db_xref="PSEUDO:CAE41643.1" FT misc_feature 39895..39945 FT /note="Signal peptide predicted for BP1351 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.996 between residues 17 and 18" FT CDS 40880..41677 FT /transl_table=11 FT /locus_tag="BP1352" FT /product="conserved hypothetical protein" FT /note="Similar to Aquifex aeolicus citrate synthase GltA or FT Aq_150 TR:O66541 (EMBL:AE000675) (259 aa) fasta scores: FT E(): 2.6e-17, 31.44% id in 229 aa, and to FT Methanothermobacter thermautotrophicus citrate synthase I FT Mth962 TR:O27043 (EMBL:AE000870) (280 aa) fasta scores: FT E(): 4.5e-16, 32.55% id in 258 aa" FT /db_xref="GOA:Q7VYI5" FT /db_xref="InterPro:IPR016142" FT /db_xref="UniProtKB/TrEMBL:Q7VYI5" FT /protein_id="CAE41644.1" FT /translation="MNALTSDMGWSDARTIVVRGHDLNHEIIGHLNLGDFAFLEITGRK FT PDPQESTLFNALLAMLVEHGMTPTAMVARLTYLGAPESMQAAIAAGLCGMGTKFVGTAE FT GAARLLQEALPLGSEQALDIDATAQRIVAEQRAARQMLPGIGHPVHKPVDPRTTALFAL FT AERTGFHGRYVALMQALSAQAEKALGKPGVLPVNATGALAALASELGIAWQLCRGIAVI FT GRAVGLVGHIAEELRNPIAERLWVRTDAEVSAHLKPAPQEPRP" FT CDS 41674..42867 FT /transl_table=11 FT /locus_tag="BP1353" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti putative conserved FT membrane-anchored protein Smb21182 TR:CAC49248 FT (EMBL:AL603645) (394 aa) fasta scores: E(): 8.4e-39, 37.01% FT id in 389 aa, and to Streptomyces coelicolor putative FT racemase Scf41.21 TR:Q9RJU8 (EMBL:AL117387) (403 aa) fasta FT scores: E(): 3.5e-37, 38.06% id in 402 aa" FT /db_xref="GOA:Q7VYI4" FT /db_xref="HSSP:1PQY" FT /db_xref="InterPro:IPR003673" FT /db_xref="UniProtKB/TrEMBL:Q7VYI4" FT /protein_id="CAE41645.1" FT /translation="MKLLSHIRVLDLGRFITAPLAGQLLGELGADVVKVESRDAIDPFR FT AFEGGLYGPHFQSHNRNKRSLALEFATPEGQAALRRLIAGADVVLLNMRPGAEHKLGLD FT YESLRALNPGLVYCSITGFGASGPYAHRPAFDNVGQALSGWLSMFHQGSDPRVPGPPVS FT DSLTGLYAAMGVLAALLERARSGQGRKVEVSMLESLIAFSNEPLGQLSAKGARPAHYGR FT ASLSQSYILTCADGLRIGLHLSSPEKFWRSLVEAIERPDLLARFPDRASRVDGYEALAR FT ELAAVFAQRERADWMRVLEAHDVPAAPERLLDELADDAQVRHLEVFQQLRHPRHGPVTA FT ANRAIRFDGDNHSAFAPPPAFGEHTLEVLVQAGFGAEDIERLHACGAIAATGHGAHA" FT misc_feature 41869..42432 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family" FT CDS 42864..43826 FT /transl_table=11 FT /locus_tag="BP1354" FT /product="putative exported protein" FT /note="Similar to Pseudomonas putida hypothetical 34.5 kDa FT protein in clcB-clcD intergenic region precursor FT SW:YCLC_PSEPU (Q47100) (329 aa) fasta scores: E(): 6.3e-30, FT 33.11% id in 308 aa, and to Alcaligenes eutrophus FT hypothetical 35.7 kDa protein MacB TR:Q9RBG2 FT (EMBL:AF130250) (340 aa) fasta scores: E(): 1.8e-29, 34.61% FT id in 312 aa" FT /db_xref="GOA:Q7VYI3" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VYI3" FT /protein_id="CAE41646.1" FT /translation="MKPNILQWALGAAFACVAAASTAQDYPARPVHLIVPYPPGGGTDV FT VARAVAQRLQAELGQPVVVESKPGASEIIGTGSVARAAPDGYTIGLVTSTYSINWVLDA FT SLPYKPAQFAAVAPLVGVPMLALVPAGSPVQDMAGLVAASRQAPGRMNYASLGPNSLQA FT MSTEWLKHLSGADLTAVAYKGAAPALVALSTGEVDFTFAGLGASRPMLDAGKVRALAIS FT TAQAFPPMPTLPPVAQAAPGYDVQIWYGLIAPAGVPPAILDRLNAALARVMDDAALRRQ FT FSDLGYVPTVMDRKAFEQFLQRDTLQWREMIGAAGIRAQ" FT misc_feature 42864..42932 FT /note="Signal peptide predicted for BP1354 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.969 between residues 23 and 24" FT misc_feature 42879..42911 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(43844..44884) FT /transl_table=11 FT /locus_tag="BP1355" FT /product="probable LacI-family transcriptional regulator" FT /note="Similar to Escherichia coli transcriptional FT repressor CytR or B3934 or Z5481 or Ecs4861 SW:CYTR_ECOLI FT (P06964) (341 aa) fasta scores: E(): 8.7e-25, 30% id in 350 FT aa, and to Streptomyces coelicolor probable LacI-family FT transcriptional regulator Scc57a.16 TR:Q9RDI2 FT (EMBL:AL136519) (347 aa) fasta scores: E(): 4e-27, 30.03% FT id in 323 aa" FT /db_xref="GOA:Q7VYI2" FT /db_xref="HSSP:1DBQ" FT /db_xref="InterPro:IPR001761" FT /db_xref="UniProtKB/TrEMBL:Q7VYI2" FT /protein_id="CAE41647.1" FT /translation="MAGIAARTNVTIKDIATRLKLSHATVSRALADHPKISAATKASVR FT EAAQAMGYVPNGTAQNMRTAHSPVIGLIVPDIQNDFYAAVAKIVADAAVARGFQLALSI FT TEDNPEREFNDLRAFVVSRAAGVIITPTIKPKPETIALLKGVRAIQLIRQHAAVAAEAV FT VIDERAATRAAAEHLIHYGHRRIAYVGTTTDLSLGEDRLSGFSSAMSKAGLDASLTAVG FT PPRVEFAHRAVHGLMSGPKPPTALIIGSSRLTVGALKALRGLGLSCPADVSVVGYGDPD FT WFELVGDGLTTVSPPVYPLGAYAINLLLARIQGEAVPAAADPAHATASRFPATLAIRGS FT TRPLAR" FT misc_feature complement(43973..44689) FT /note="HMMPfam hit to PF00532, Periplasmic binding proteins FT and sugar binding domain of the LacI family." FT misc_feature complement(44780..44863) FT /note="HMMPfam hit to PF00356, Bacterial regulatory FT proteins, lacI family" FT misc_feature complement(44792..44857) FT /note="Predicted helix-turn-helix motif with score 2000 FT (+6.00 SD) at aa 10-31, sequence VTIKDIATRLKLSHATVSRALA" FT CDS complement(44872..45480) FT /transl_table=11 FT /gene="leuD" FT /locus_tag="BP1356" FT /product="3-isopropylmalate dehydratase small subunit" FT /EC_number="4.2.1.33" FT /note="Similar to Escherichia coli 3-isopropylmalate FT dehydratase small subunit LeuD or B0071 SW:LEUD_ECOLI FT (P30126) (201 aa) fasta scores: E(): 3.6e-30, 46.15% id in FT 195 aa, and to Alcaligenes eutrophus 3-isopropylmalate FT dehydratase small subunit LeuD SW:LEUD_ALCEU (Q44022) (208 FT aa) fasta scores: E(): 1.7e-33, 48.03% id in 204 aa. Also FT similar to BP1482, 46.190% identity (48.259% ungapped) in FT 210 aa overlap." FT /db_xref="GOA:Q7VYI1" FT /db_xref="InterPro:IPR015937" FT /db_xref="UniProtKB/Swiss-Prot:Q7VYI1" FT /protein_id="CAE41648.1" FT /translation="MQAFIRAHGIILPMNQDHVDTDAIIPQRWLVTVERDGLADGFMGA FT WRYDEHGQPRPECVLNQPAYQGAAIVLARENYGCGSSREHAVWAHQGYGIRAIVAASYG FT PIFHENCLKNGLLPVTLPAADVATLMAQALADPGCACEVDLVSQRVIGPDGRAYPFEID FT AGRRQLLLEGVDDIDLALARAADIAAFQRRQQQDQPWLA" FT misc_feature complement(44974..45480) FT /note="HMMPfam hit to PF00694, Aconitase C-terminal domain" FT CDS complement(join(45482..45880,45868..46899)) FT /pseudo FT /transl_table=11 FT /gene="leuC" FT /locus_tag="BP1357" FT /product="3-isopropylmalate dehydratase large subunit FT (Pseudogene)" FT /EC_number="4.2.1.33" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 344. The sequence has been checked FT and believed to be correct. Similar to Escherichia coli FT 3-isopropylmalate dehydratase large subunit LeuC or B0072 FT SW:LEU2_ECOLI (P30127) (465 aa) fasta scores: E(): 2.6e-84, FT 49.35% id in 466 aa, and to Rhizobium meliloti probable FT 3-isopropylmalate dehydratase large subunit protein FT TR:CAC47785 (EMBL:AL591793) (469 aa) fasta scores: E(): FT 2.1e-85, 49.57% id in 466 aa. Also similar to BP1481 FT (51.983% identity in 479 aa overlap)" FT /db_xref="PSEUDO:CAE41649.1" FT misc_feature complement(join(45512..45880,45868..46845)) FT /note="HMMPfam hit to PF00330, Aconitase family (aconitate FT hydratase)" FT misc_feature complement(45647..45688) FT /note="ScanRegExp hit to PS01244, Aconitase family FT signature 2. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(45818..45868) FT /note="ScanRegExp hit to PS00450, Aconitase family FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT variation complement(45875..45878) FT /note="GGGC in pertussis; GGGC(GGGCCGTCCGCTGGCGGGC) in FT parapertussis and bronchiseptica" FT CDS 47069..48064 FT /transl_table=11 FT /locus_tag="BP1358" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta FT scores: E(): 1.2e-42, 39.37% id in 320 aa, and to Comamonas FT testosteroni OrfJ protein TR:Q9RHM9 (EMBL:AB029044) (326 FT aa) fasta scores: E(): 1.4e-40, 38.87% id in 319 aa" FT /db_xref="GOA:Q7VYI0" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VYI0" FT /protein_id="CAE41650.1" FT /translation="MNSIKRVRGKTAALFAALGLWAAAVPAAGAATPYPERPIRLIVPF FT GAGGTTDILGRVLGQQLGEALKQTVIVENRPGANGNIGSDAVAKAAPDGYTLLFAADAT FT LVINPTLYSQLPFKPESDFAPISRIAVVPLVLVANPAVKADTLPELVKLGGKPDARLDF FT GSAGAGSMGHLVGERLNRATGMSMTHIPYKSGAQAISDVVSGQIPLLITGLAVAEPFLR FT DGKLKAIAVTSGQRFPGAPKVPTIAEGGVKDFDSPSWYGLLAPAGTPAPVLEKIHAALA FT SALQTEDMKKCMVELGAWPVVDTQAAFAELIKADTQRWSQIIQAAGITVQ" FT misc_feature 47069..47158 FT /note="Signal peptide predicted for BP1358 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.593 between residues 30 and 31" FT misc_feature 47102..47170 FT /note="1 probable transmembrane helix predicted for BP1358 FT by TMHMM2.0 at aa 12-34" FT CDS 48084..49262 FT /transl_table=11 FT /locus_tag="BP1359" FT /product="putative mandelate racemase" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4041 TR:Q9HWY6 (EMBL:AE004821) (389 aa) fasta FT scores: E(): 1.7e-54, 43.97% id in 382 aa, and to FT Sulfolobus tokodaii 373aa long hypothetical mandelate FT racemase St1108 TR:BAB66141 (EMBL:AP000985) (373 aa) fasta FT scores: E(): 1.9e-13, 28.92% id in 325 aa" FT /db_xref="GOA:Q7VYH9" FT /db_xref="InterPro:IPR001354" FT /db_xref="UniProtKB/TrEMBL:Q7VYH9" FT /protein_id="CAE41651.1" FT /translation="MRITAIREIAVPLQGNISNSLVSFAEHTVSLVALVSDVVRDGRPL FT IGYAFDSIGRYAQPGLMRERFIPRLLQAAPHELLDDGGQAFDPARASAIMLRNEKPGGH FT GDRAAAVGALELAFWDLNAKLRDEPAYCTIARHVGRPAQAGATQVYAAGGYYYDSGDPL FT QRLRDEFRGYLDQGFVKFKMKIGGASLADDLARIEAALGVAGEGANLAVDANGRFDLDT FT ALAYARALEPYGLRWYEEIGDPLDYHLNSLVAQAYAGTIATGENLFSLPDVRNLLHFAG FT VRPGRDILQMDPGLSYGLTEYLRMMAAVEAAGFGRSCLHPHGGHLINLHIAAGLGLGGC FT EAYPGVFQPFGGYPAACALGAGQVRPTDAPGFGLEQKQELAPYISVLAHGKA" FT misc_feature 48105..49154 FT /note="HMMPfam hit to PF01188, Mandelate racemase / FT muconate lactonizing enzyme, C-terminal domain" FT CDS 49273..50190 FT /transl_table=11 FT /locus_tag="BP1360" FT /product="putative ketopantoate reductase" FT /EC_number="1.1.1.169" FT /note="Similar to Streptococcus pyogenes putative FT 2-dehydropantoate 2-reductase ApbA or Spy0852 TR:Q9A0B3 FT (EMBL:AE006535) (307 aa) fasta scores: E(): 7.2e-19, 29.04% FT id in 303 aa, and to Halobacterium sp Vng0730C TR:Q9HRF0 FT (EMBL:AE005017) (303 aa) fasta scores: E(): 3.1e-18, 31.04% FT id in 306 aa" FT /db_xref="GOA:Q7VYH8" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VYH8" FT /protein_id="CAE41652.1" FT /translation="MKIAIMGCGAMGSVYAGLLAANGHEVIAVDRWAEHVQAMSEQGLR FT VEGASGDRVARLRAYREAPAEPVDLIIIAVKAAQAGSAAAQARAMLGPDTLVLTIQNGL FT GSADSVAEAIGAERLAVGIAAAFGASLSGPGHVHHNGMSAVRMGAYAGLGAEKLDGIAE FT VWRGAGFNAQAVDNLPAMQWEKLICNVAYSAPCTLTGLTIGEVLDAPHASAVSQAAATE FT AWNVARALGVPVAVEDPVAHVRAFGERIRGAKPSVMLDHEQRRVSEIDYINGAIPRQAA FT RAGIQAPVNQTLTALVKQREEAWK" FT misc_feature 49273..49320 FT /note="Signal peptide predicted for BP1360 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.962) with cleavage site FT probability 0.386 between residues 16 and 17" FT misc_feature 49276..49638 FT /note="HMMPfam hit to PF02254, KTN NAD-binding domain" FT misc_feature 49405..50178 FT /note="HMMPfam hit to PF02558, Ketopantoate reductase FT PanE/ApbA" FT CDS complement(50246..51196) FT /transl_table=11 FT /locus_tag="BP1361" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA8" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA8" FT /protein_id="CAE41653.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHR" FT repeat_region 50246..50277 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(50246..51298) FT misc_feature complement(50282..50815) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(50873..50938) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(51267..51298) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(51295..52065) FT /transl_table=11 FT /locus_tag="BP1362" FT /product="putative amino-acid ABC transporter, ATP-binding FT protein" FT /note="Similar to Rhizobium meliloti putative amino-acid FT ABC transporter ATP-binding protein Smc03894 TR:CAC47856 FT (EMBL:AL591793) (253 aa) fasta scores: E(): 1.3e-55, 69.91% FT id in 246 aa, and to Clostridium acetobutylicum amino acid FT ABC-type transporter, ATPase component Cac3327 TR:Q97DZ3 FT (EMBL:AE007829) (247 aa) fasta scores: E(): 1.3e-39, 49.59% FT id in 246 aa. Similar to several B. pertussis CDSs: BP1181, FT P3828, BP1534, BP1855, BP1575, BP0054, P0768, and BP1510." FT /db_xref="GOA:Q7VYH7" FT /db_xref="HSSP:1B0U" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VYH7" FT /protein_id="CAE41654.1" FT /translation="MIGLQGIDKSFGGNRVLHGVDVVIPEGSVTALIGPSGSGKSTLLR FT CVNLLEIPEAGVLRLGPETLAFDGRRPARDAVQRIRRQTGMVFQNFQLFPHQSVIDNVM FT EGLVTVQRWDKPRARARAMELLEKVGMTAKADAWPVTLSGGQQQRVAIARALAPSPRVL FT LCDEPTSALDPSLAIEVVDVLRRLAGEGMTMLMATHDLRLAASIAQQVVFLEGGAVVEA FT GTPREVFAQSRDARTAAFVSTLTQGLPEEWSAPA" FT misc_feature complement(51415..51987) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(51598..51642) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(51943..51966) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(52062..52742) FT /transl_table=11 FT /locus_tag="BP1363" FT /product="putative amino-acid ABC transporter, permease FT protein" FT /note="Similar to Rhizobium meliloti putative amino-acid FT transport system permease ABC transporter protein Smc03893 FT TR:CAC47855 (EMBL:AL591793) (226 aa) fasta scores: E(): FT 1.2e-57, 71.3% id in 223 aa, and to Clostridium FT acetobutylicum amino acid ABC-type transporter, permease FT component Cac3326 TR:Q97DZ4 (EMBL:AE007829) (227 aa) fasta FT scores: E(): 3.2e-47, 64.95% id in 214 aa" FT /db_xref="GOA:Q7VYH6" FT /db_xref="InterPro:IPR010065" FT /db_xref="UniProtKB/TrEMBL:Q7VYH6" FT /protein_id="CAE41655.1" FT /translation="MPAWLQLMLDSFWPLLHAGLMFTVPLTLLSFAAGLALAFVVALLR FT LFGPWPIVALMRFYVWLIRGTPLLVQLFVIFYGLPSVGIVLDPLPAALIGFTLNVGAYN FT SEVIRGAIESIPRGQWEAAYSLSMTRGQAMRRTVLPQAARVAVPPLANSFIALVKDTSL FT AAVLTVPEIFQAAQRIAAVTYEPLILYTEAALIYLVFSSALSSLQVRLEKRFGQHAVFA FT EQHR" FT misc_feature complement(52200..52412) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature complement(join(52506..52571,52611..52676)) FT /note="2 probable transmembrane helices predicted for FT BP1363 by TMHMM2.0 at aa 22-44 and 57-79" FT misc_feature complement(52629..52742) FT /note="Signal peptide predicted for BP1363 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.635) with cleavage site FT probability 0.379 between residues 38 and 39" FT CDS complement(52809..53597) FT /transl_table=11 FT /locus_tag="BP1364" FT /product="putative amino-acid ABC transporter, periplasmic FT amino acid-binding protein" FT /note="Similar to Rhizobium loti amino acid ABC FT transporter, periplasmic amino acid-binding protein Mll3861 FT TR:Q98FA8 (EMBL:AP003002) (267 aa) fasta scores: E(): FT 1.8e-58, 65.88% id in 255 aa, and to Clostridium FT acetobutylicum periplasmic amino acid binding protein FT cac3325 TR:Q97DZ5 (EMBL:AE007829) (269 aa) fasta scores: FT E(): 1.5e-47, 57.85% id in 242 aa" FT /db_xref="GOA:Q7VYH5" FT /db_xref="HSSP:1HSL" FT /db_xref="InterPro:IPR018313" FT /db_xref="UniProtKB/TrEMBL:Q7VYH5" FT /protein_id="CAE41656.1" FT /translation="MNFSLRKLLLAGLVPLAMIGTAVQADDLAAIKAAGVIKIGTEGTY FT APFSYHDASNKLTGFDVEIGRAIAQKLGVKAEFVEGKWDGLIAGLDVKRYDAVINQVGI FT TDARKAKYDFSDPYISSQAALIVREDNQAIKSFADLKGRKSANTLTSNFGKLAQSYGAE FT VVPVQGFNEAIDLLMSGRVEATVNDNLSFLDFKKQKPNAKVKVAAYDKSKEFSESGVLI FT RKNNPELQAAINKALAELKADGTYRKISEQYFGADLSAAQ" FT misc_feature complement(52830..53489) FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3" FT misc_feature complement(53382..53423) FT /note="ScanRegExp hit to PS01039, Bacterial extracellular FT solute-binding proteins, family 3 signature. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature complement(53523..53597) FT /note="Signal peptide predicted for BP1364 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.953 between residues 25 and 26" FT repeat_region complement(53802..55003) FT /note="Truncated insertion sequence. This IS element lacks FT the 5' 42 bps. However, this deletion does not extend into FT the transposase coding sequence." FT CDS complement(53844..54860) FT /transl_table=11 FT /locus_tag="BP1365" FT /product="transposase for IS1663" FT /note="Similar to Neisseria meningitidis putative FT invertase/transposase Nma1800 TR:Q9JTF3 (EMBL:AL162757) FT (318 aa) fasta scores: E(): 2e-17, 28.48% id in 316 aa and FT Acinetobacter spSE19. pilin inverting protein ChnY FT TR:Q9F7E1 (EMBL:AF282240) (324 aa) fasta scores: E(): FT 8.2e-50, 47.516% id in 322 aa" FT /db_xref="GOA:Q7VYH4" FT /db_xref="InterPro:IPR002525" FT /db_xref="UniProtKB/TrEMBL:Q7VYH4" FT /protein_id="CAE41657.1" FT /translation="MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKAVVN FT TAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQAATALPQVRVSLVNPAQARDFAKA FT LALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELNRKE FT KSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQ FT AGNAILAVMHNRHIDSAQSLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAA FT LVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLCFGVLKNRIPYQPNYAMNG" FT misc_feature complement(53976..54308) FT /note="HMMPfam hit to PF02371, Transposase FT IS116/IS110/IS902 family" FT misc_feature complement(54321..54608) FT /note="HMMPfam hit to PF01548, Transposase" FT CDS 55166..56320 FT /transl_table=11 FT /gene="flhB" FT /locus_tag="BP1366" FT /product="flagellar biosynthetic protein FlhB" FT /note="Similar to Salmonella typhimurium flagellar FT biosynthetic protein FlhB SW:FLHB_SALTY (P40727) (383 aa) FT fasta scores: E(): 2.7e-75, 54.04% id in 383 aa, and to FT Escherichia coli flagellar biosynthetic protein FlhB or FT B1880 SW:FLHB_ECOLI (P76299) (382 aa) fasta scores: E(): FT 6.6e-74, 54.54% id in 374 aa" FT /db_xref="GOA:Q7VYH3" FT /db_xref="InterPro:IPR006135" FT /db_xref="UniProtKB/TrEMBL:Q7VYH3" FT /protein_id="CAE41658.1" FT /translation="MAEESDLEKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVAG FT VWLSGSMLYQGLTGVLRRGLGFEPRVAQDPGVMVEQAVHGAGRALLTVLPMFGMLAVVA FT VLSAVLLGGFVFSTKPLEPNFSKLSLWSGIKRMFSAQTVVELVKALAKAALVGGVAVWV FT IWHYHDDMLGLMHVAPSAALTSAMSLVALCSALIVGSLLFVVLLDVPWQIWNHLKKLRM FT TKEDVRQEHKEGEGDPHVKGRIRQQQRAMARRRMMSEVPGADVVVTNPTHYAVALKYAD FT GAAGAPRVVAKGTGLIAARIRELAAEHRIPTLEAPPLARALHQHVELGQEIPTALYTAV FT AEVLAWVFQLRSWRPGLGREPQAPTALVVPAELDPHSPTAAQGA" FT misc_feature 55181..56209 FT /note="HMMPfam hit to PF01312, FlhB HrpN YscU SpaS Family" FT misc_feature join(55271..55339,55445..55513,55592..55660,55718..55786) FT /note="4 probable transmembrane helices predicted for FT BP1366 by TMHMM2.0 at aa 36-58, 94-116, 143-165 and FT 185-207" FT CDS join(56324..57634,57638..58441) FT /pseudo FT /transl_table=11 FT /gene="flhA" FT /locus_tag="BP1367" FT /product="flagellar biosynthesis protein FlhA (Pseudogene)" FT /note="Pseudogene. This CDS contains an in-frame TAG stop FT codon. The sequence has been checked and believed to be FT correct. Similar to Escherichia coli flagellar biosynthesis FT protein FlhA or B1879 SW:FLHA_ECOLI (P76298) (692 aa) fasta FT scores: E(): 1.4e-138, 65.24% id in 705 aa, and to FT Salmonella typhimurium flagellar biosynthesis protein FlhA FT SW:FLHA_SALTY (P40729) (692 aa) fasta scores: E(): FT 2.4e-138, 65.1% id in 705 aa. Also similar to BP2261, FT 36.510% identity (38.426% ungapped) in 682 aa overlap." FT /db_xref="PSEUDO:CAE41659.1" FT misc_feature join(56402..57634,57638..58405) FT /note="HMMPfam hit to PF00771, FHIPEP family" FT misc_feature 56753..56824 FT /note="ScanRegExp hit to PS00994, Bacterial export FHIPEP FT family signature. Confirmed by InterPro eMOTIF pattern FT match." FT variation 57635..57637 FT /note="TAG stop in pertussis; TGG in parapertussis and FT bronchiseptica" FT CDS join(58438..60636,60635..60808) FT /pseudo FT /transl_table=11 FT /gene="flhF" FT /locus_tag="BP1368" FT /product="flagellar biosynthesis protein FlhF (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 733. The frameshift occurs within FT a polymeric tract of (GC)4. The sequence has been checked FT and believed to be correct. Similar, over its N-terminal FT region, to Pseudomonas putida flagellar biosynthesis FT protein FlhF SW:FLHF_PSEPU (O52256) (437 aa) fasta scores: FT E(): 1.1e-24, 36.21% id in 439 aa" FT /db_xref="PSEUDO:CAE41660.1" FT misc_feature 58849..59598 FT /note="HMMPfam hit to PF00448, SRP54-type protein, GTPase FT domain" FT misc_feature 59035..59058 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT variation 60628..60635 FT /note="(GC)4 in pertussis; (GC)5 in parapertussis and FT bronchiseptica" FT CDS complement(60826..61308) FT /transl_table=11 FT /locus_tag="BP1370" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa FlgN TR:AAK31637 FT (EMBL:AY029221) (156 aa) fasta scores: E(): 3.5, 28.16% id FT in 142 aa" FT /db_xref="GOA:Q7VYH2" FT /db_xref="InterPro:IPR007809" FT /db_xref="UniProtKB/TrEMBL:Q7VYH2" FT /protein_id="CAE41661.1" FT /translation="MNSAALKSCLERENALVVEFLHALEAETEALMDRRAHESLQAAVQ FT RKETLADDLAQLGAERDALLSGAGLASGPAGTDAAAAAHPELGPLWQALQANAAQAREH FT NQRNGTLIAVNLRHTQESLDALRQAAGTGAAATYDAQGRGKRGYSSAASGRAIVAT" FT CDS complement(61326..61616) FT /transl_table=11 FT /gene="flgM" FT /locus_tag="BP1371" FT /product="negative regulator of flagellin synthesis" FT /note="Similar to Escherichia coli negative regulator of FT flagellin synthesis FlgM or B1071 SW:FLGM_ECOLI (P43532) FT (97 aa) fasta scores: E(): 0.0023, 37.36% id in 91 aa, and FT to Salmonella typhimurium negative regulator of flagellin FT synthesis FlgM or FlgR or MviS SW:FLGM_SALTY (P26477) (97 FT aa) fasta scores: E(): 0.00074, 36.55% id in 93 aa" FT /db_xref="GOA:Q7VYH1" FT /db_xref="InterPro:IPR007412" FT /db_xref="UniProtKB/TrEMBL:Q7VYH1" FT /protein_id="CAE41662.1" FT /translation="MKIQSSTSHPVGPNAVGARAEHAVAQAYGSGAQAGSGSAQVALSP FT ASRQLLAQEGGSDIDVERVAAIRAAIASGQLRIDPTRIADSLIASARDLLK" FT CDS complement(61743..62453) FT /transl_table=11 FT /gene="flgA" FT /locus_tag="BP1372" FT /product="flagella basal body P-ring formation protein" FT /note="Similar to Salmonella typhimurium flagella basal FT body P-ring formation protein FlgA precursor FlgA FT SW:FLGA_SALTY (P40131) (219 aa) fasta scores: E(): 1.2e-12, FT 33.01% id in 206 aa, and to Escherichia coli flagella basal FT body P-ring formation protein FlgA precursor FlgA or B1072 FT SW:FLGA_ECOLI (P75933) (219 aa) fasta scores: E(): 9.5e-13, FT 32.36% id in 207 aa" FT /db_xref="GOA:Q7VYH0" FT /db_xref="InterPro:IPR013974" FT /db_xref="UniProtKB/TrEMBL:Q7VYH0" FT /protein_id="CAE41663.1" FT /translation="MKSPRSRSIARLAALAILAGAMPRAAAEPPAQDPAELAAAAESYL FT RQQLAALPGEPSITLDPLRSDRLDACEALTPFMPSGMRVRARMTVGLRCVAPRTWTVYA FT QATVSVPGQYYVAARQIAPGKTIEAADLTTRDGDLVALPPGVITDAAAILGMRPAHRIA FT AGQPIKGAGLRSAESVSRGQSVRITARGNGFVVSSEGQALDNAPPGATVQVRTASGQVV FT SGIVQAAGLVEIQL" FT misc_feature complement(62376..62453) FT /note="Signal peptide predicted for BP1372 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.647 between residues 26 and 27" FT CDS 62637..63044 FT /transl_table=11 FT /gene="flgB" FT /gene_synonym="flbA" FT /gene_synonym="fla FII" FT /locus_tag="BP1373" FT /product="flagellar basal-body rod protein FlgB" FT /note="Similar to Salmonella typhimurium flagellar FT basal-body rod protein FlgB or FlbA or Fla FII FT SW:FLGB_SALTY (P16437) (137 aa) fasta scores: E(): 5.6e-23, FT 50.74% id in 134 aa, and to Escherichia coli flagellar FT basal-body rod protein FlgB or FlbA or Fla FII or B1073 FT SW:FLGB_ECOLI (P75934) (137 aa) fasta scores: E(): 3.1e-25, FT 57.03% id in 135 aa" FT /db_xref="GOA:Q7VYG9" FT /db_xref="InterPro:IPR001444" FT /db_xref="UniProtKB/TrEMBL:Q7VYG9" FT /protein_id="CAE41664.1" FT /translation="MLDRLNEDFRFFQQSIALRAQRQEVLSSNIANADTPNYKARDFDF FT KAAMQGALEQRMRLPDTNLALISARHIPGQATTPSPAELMYRLPYQPSLDGNTVDMDSE FT RVRFADNTLHYQSSLQVLSGRIRSLMSAIQE" FT misc_feature 62661..62753 FT /note="HMMPfam hit to PF00460, Flagella basal body rod FT protein" FT CDS 63057..63476 FT /transl_table=11 FT /gene="flgC" FT /gene_synonym="flaW" FT /gene_synonym="fla FIII" FT /locus_tag="BP1374" FT /product="flagellar basal-body rod protein FlgC" FT /note="Similar to Salmonella typhimurium flagellar FT basal-body rod protein FlgC or FlaW or Fla FIII FT SW:FLGC_SALTY (P16438) (134 aa) fasta scores: E(): 3.4e-31, FT 67.39% id in 138 aa, and to Yersinia enterocolitica FT flagellar basal-body rod protein FlgC SW:FLGC_YEREN FT (Q56894) (134 aa) fasta scores: E(): 4.1e-32, 72.46% id in FT 138 aa" FT /db_xref="GOA:Q7VYG8" FT /db_xref="InterPro:IPR019776" FT /db_xref="UniProtKB/TrEMBL:Q7VYG8" FT /protein_id="CAE41665.1" FT /translation="MSLLSIFEIAGSALSAQSQRMNVSASNMANADSVAGPDGQPYRAR FT QVVFQVNPPAGQAFGQEIGGVRVAGVVEDQSPFKKIYDPKHPMADAQGYVNMPNVDPVA FT ETVNMIAASRSYQANVEVLNTAKQLMLKTLTIGQS" FT misc_feature 63075..63170 FT /note="HMMPfam hit to PF00460, Flagella basal body rod FT protein" FT misc_feature 63093..63155 FT /note="ScanRegExp hit to PS00588, Flagella basal body rod FT proteins signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 63524..64228 FT /transl_table=11 FT /gene="flgD" FT /gene_synonym="flaV" FT /gene_synonym="fla FIV" FT /locus_tag="BP1375" FT /product="basal-body rod modification protein FlgD" FT /note="Similar to Salmonella typhimurium basal-body rod FT modification protein FlgD or FlaV or Fla FIV SW:FLGD_SALTY FT (P16321) (232 aa) fasta scores: E(): 4.1e-31, 46.18% id in FT 223 aa, and to Escherichia coli basal-body rod modification FT protein FlgD or FlaV or Fla FIV or B1075 SW:FLGD_ECOLI FT (P75936) (231 aa) fasta scores: E(): 9.3e-31, 44.73% id in FT 228 aa" FT /db_xref="InterPro:IPR005648" FT /db_xref="UniProtKB/TrEMBL:Q7VYG7" FT /protein_id="CAE41666.1" FT /translation="MTTVNETTSQAGLALAQAGSNSAAQGIQDQFLTLLVTQLRNQDPL FT NPMENAELTSQLAQISTVEGINNLKNTMLAISGQIDVSQSMDAVSMIGKGVLMPGDKVS FT LGADPNDPAQRGATPFGIDLQGDATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGN FT NDGGQPLADGKYSITVSASDADANPVKTEALTYGQVKSVAYSTNGLRLDLGLAGQISML FT DVRKVIGASGSA" FT misc_feature 63524..63592 FT /note="Signal peptide predicted for BP1375 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.780) with cleavage site FT probability 0.389 between residues 23 and 24" FT CDS 64294..65715 FT /transl_table=11 FT /gene="flgE" FT /gene_synonym="flaK" FT /gene_synonym="fla FV" FT /locus_tag="BP1376" FT /product="flagellar hook protein FlgE" FT /note="Similar to Salmonella typhimurium flagellar hook FT protein FlgE or FlaK or Fla FV SW:FLGE_SALTY (P16322) (402 FT aa) fasta scores: E(): 4e-24, 40.08% id in 479 aa, and to FT Escherichia coli flagellar hook protein FlgE or FlaK or Fla FT FV or B1076 SW:FLGE_ECOLI (P75937) (401 aa) fasta scores: FT E(): 1.8e-25, 40.08% id in 479 aa" FT /db_xref="GOA:Q7VYG6" FT /db_xref="InterPro:IPR020013" FT /db_xref="UniProtKB/TrEMBL:Q7VYG6" FT /protein_id="CAE41667.1" FT /translation="MGFGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYAS FT SRVGLGVKVSAINQRFTVGNISTTGGEYDMAIDGGKGFFRLTDQSGGVFYSRNGEFMVD FT KNFYIVNAQGFRLTGYPAGGVGAQPVDLQLPQGNIAPQATSTAGLQTNLNANAKVIDPN FT DTPPEDGLVELDGTTYRFTNAGGTFAWVAPAPLDGTYNGGDIVIAGGAVTGDLTSQPGY FT QPYKPLVAGIPFDPTNPLSYTDQVPTTVYDSLGNSHQMIQYFAKRPAVGTESVYEVYYV FT LDGQAMQVNGGASQTLNFDTAGNLLNQPPTAQVTFANPGGNAAPADPLEITVSYNGVTQ FT YGSDFAPKVVQNGYSSGEFMGLSVGKDGSLVAKYTNGETQTIGTLVLANFNNVQGLQPV FT GNNAWVETSESGQATLGQPGTNGLATIAGQALEASNVDMSRELVNMIVAQRTYQANAQT FT IKTQDEVMQVLMNMR" FT misc_feature 64300..64392 FT /note="HMMPfam hit to PF00460, Flagella basal body rod FT protein" FT CDS 65754..66518 FT /transl_table=11 FT /gene="flgF" FT /gene_synonym="flaX" FT /gene_synonym="fla FVI" FT /locus_tag="BP1377" FT /product="flagellar basal-body rod protein FlgF" FT /note="Similar to Salmonella typhimurium flagellar FT basal-body rod protein FlgF or FlaX or Fla FVI FT SW:FLGF_SALTY (P16323) (251 aa) fasta scores: E(): 3.1e-34, FT 48.01% id in 252 aa, and to Escherichia coli flagellar FT basal-body rod protein FlgF or FlaX or Fla FVI or B1077 FT SW:FLGF_ECOLI (P75938) (251 aa) fasta scores: E(): 6.6e-34, FT 48.01% id in 252 aa" FT /db_xref="GOA:Q7VYG5" FT /db_xref="InterPro:IPR020013" FT /db_xref="UniProtKB/TrEMBL:Q7VYG5" FT /protein_id="CAE41668.1" FT /translation="MDRIIYTAMNGAARIAEHQTVLGNNMANVNTPGFREQIALYRSVP FT MADGTSLPTRVSTVASTPGNNFEMGNMMTTGRELDVALAGPGWFALQTPQGEAYTRAGA FT LQVGVNGLLQTATGQPVLSDQNAVIEVPDQASLTIASDGTVTAIGAGDPPNNILNLGRL FT KMVNPPPQQLVHGDDGVFRMPPQPGGQPAAPLPADPSQRLLSGVLEGSNASPMGAMVGM FT IQNARRFEMQMQVIREADKNAERANGILAAAS" FT misc_feature 65766..65858 FT /note="HMMPfam hit to PF00460, Flagella basal body rod FT protein" FT misc_feature 65784..65846 FT /note="ScanRegExp hit to PS00588, Flagella basal body rod FT proteins signature." FT CDS 66562..67347 FT /transl_table=11 FT /gene="flgG" FT /gene_synonym="flaL" FT /gene_synonym="fla FVII" FT /locus_tag="BP1378" FT /product="flagellar basal-body rod protein FlgG" FT /note="Similar to Salmonella typhimurium flagellar FT basal-body rod protein FlgG or FlaL or Fla FVII FT SW:FLGG_SALTY (P16439) (260 aa) fasta scores: E(): 3.2e-60, FT 67.05% id in 261 aa, and to Escherichia coli, and flagellar FT basal-body rod protein FlgG or FlaL or Fla FVII or B1078 or FT Z1716 or Ecs1456 SW:FLGG_ECOLI (P75939) (260 aa) fasta FT scores: E(): 7.2e-60, 66.66% id in 261 aa" FT /db_xref="GOA:Q7VYG4" FT /db_xref="InterPro:IPR020013" FT /db_xref="UniProtKB/TrEMBL:Q7VYG4" FT /protein_id="CAE41669.1" FT /translation="MMRSLWVAKTGLEGQQTSMDVISNNLANVQTNGFKWGRAVFQDLM FT YQTLRQPGAQVGDANQLPSGLQLGMGVQVAATQRVFSQGNMNNTGGEMDIAIQGRGFLQ FT VELPDGTQAYTRDGSLQVDQNGQLTTAGGYVIQPPINVPDNALSLTIGKDGTVSVTQPG FT AAGTNVQIGQLQVATFINPTGLQSVGENLYLETDSSGPANLLQPGIDGAGQILQQYVET FT SNVNVAEELVNMITTQRAYEMNSKAVKTSDEMLARLTQL" FT misc_feature 66574..66666 FT /note="HMMPfam hit to PF00460, Flagella basal body rod FT protein" FT misc_feature 67344..67400 FT /note="Signal peptide predicted for BP1379 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.994) with cleavage site FT probability 0.603 between residues 19 and 20" FT CDS 67347..68036 FT /transl_table=11 FT /gene="flgH" FT /gene_synonym="flaY" FT /gene_synonym="fla FVIII" FT /locus_tag="BP1379" FT /product="flagellar L-ring protein precursor" FT /note="Similar to Salmonella typhimurium flagellar L-ring FT protein precursor FlgH or FlaY or Fla FVIII SW:FLGH_SALTY FT (P15929) (232 aa) fasta scores: E(): 7.9e-37, 54.5% id in FT 233 aa, and to Escherichia coli flagellar L-ring protein FT precursor FlgH or FlaY or Fla FVIII or B1079 or Z1717 or FT Ecs1457 SW:FLGH_ECOLI (P75940) (232 aa) fasta scores: E(): FT 5.7e-36, 54.07% id in 233 aa" FT /db_xref="GOA:Q7VYG3" FT /db_xref="InterPro:IPR000527" FT /db_xref="UniProtKB/Swiss-Prot:Q7VYG3" FT /protein_id="CAE41670.1" FT /translation="MLKTVLRLPVCAALLALAAGCAMIPPEPVVICPLTAPPPSPPQPS FT ARPNGSIYQPSAYGNYPLFEDRRPRNVGDIVTIVLEEKTNAAKGVATNTSRDGSATLGV FT AAAPRFMDGIINDKLDTDISGGNTANGTGKSSANNTFTGTITTTVIGVLPNGNLQIAGE FT KQIAINRGSEYVRFSGVVDPRSITGSNTVSSTRVADARIEYRSKGVMDEVQTMGWLQRF FT FLIASPF" FT misc_feature 67377..67409 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 67407..68030 FT /note="HMMPfam hit to PF02107, Flagellar L-ring protein" FT CDS 68039..69172 FT /transl_table=11 FT /gene="flgI" FT /gene_synonym="flaM" FT /gene_synonym="fla FIX" FT /locus_tag="BP1380" FT /product="flagellar P-ring protein precursor" FT /note="Similar to Salmonella typhimurium flagellar P-ring FT protein precursor FlgI or FlaM or Fla FIX SW:FLGI_SALTY FT (P15930) (365 aa) fasta scores: E(): 5.4e-81, 66.2% id in FT 364 aa, and to Escherichia coli flagellar P-ring protein FT precursor FlgI or FlaM or Fla FIX or B1080 SW:FLGI_ECOLI FT (P75941) (365 aa) fasta scores: E(): 8e-81, 66.47% id in FT 355 aa" FT /db_xref="GOA:Q7VYG2" FT /db_xref="InterPro:IPR001782" FT /db_xref="UniProtKB/Swiss-Prot:Q7VYG2" FT /protein_id="CAE41671.1" FT /translation="MTFPTSLSVLLIPLARAVLALELLGAGAAHAERLKDLASIQGVRG FT NQLIGYGLVVGLDGSGDQVRQTLFTQQSLTNMLSQLGITVPQGSNMQLKNVAAVMVTAT FT LPSFARPGQTVDVVVSSMGNAKSLRGGTLLMTPLKGADNQVYVIAQGNLLVGGAGASAG FT GSSVQINQLNGGRISNGAIVERAVPTMYAQDGMVYLEMNNTDFGTTQNAATAINRQFGA FT GTAMALDGRVIQVRGPLDPSMMPAFMSQVENLQVARAPATAKVIINARTGSVVMNRTVM FT IEEAAVAHGNLSVIINRQNQVFQPDTPFTEGQTVVVPNTQIEVRQDGGALQRVTTSANL FT ADVVKALNALGATPQDLLAILQAMKTAGALRADLEII" FT misc_feature 68039..68098 FT /note="Signal peptide predicted for BP1380 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.783 between residues 20 and 21" FT misc_feature 68135..69169 FT /note="HMMPfam hit to PF02119, Flagellar P-ring protein" FT CDS 69190..70212 FT /transl_table=11 FT /gene="flgJ" FT /gene_synonym="flaZ" FT /gene_synonym="fla FX" FT /locus_tag="BP1381" FT /product="peptidoglycan hydrolase" FT /EC_number="3.2.1.-" FT /note="Similar to Salmonella typhimurium peptidoglycan FT hydrolase FlgJ or FlaZ or Fla FX SW:FLGJ_SALTY (P15931) FT (316 aa) fasta scores: E(): 3.9e-22, 42.58% id in 317 aa, FT and to Escherichia coli peptidoglycan hydrolase FlgJ or FT FlaZ or Fla FX or B1081 SW:FLGJ_ECOLI (P75942) (313 aa) FT fasta scores: E(): 3.9e-22, 40.56% id in 318 aa" FT /db_xref="GOA:Q7VYG1" FT /db_xref="InterPro:IPR019301" FT /db_xref="UniProtKB/TrEMBL:Q7VYG1" FT /protein_id="CAE41672.1" FT /translation="MSFVSYTSRPGVQESVFDLGRLADLKRDAVKAPDGQRQQTEVARQ FT FEALFLQMMLKRMREATPKEGLFDSQQTEMLQGMADEQLALQLASPDIGLAQALLGQMQ FT QGQPPVPAAAAAGGDAAAARALAGTAAPAPLVRDLRGNYVQPDPAPRREVNALLDVLRS FT NRARDRAMAAAEGAPSHVVDFVSRMSRAANVAAQQSGVPARLILGQAALESGWGRRELR FT HEDGSTSYNLFGIKAGASWKGKVVNVMTTEYVDGVAQKLVQSFRAYSSYEESFSDYARL FT IGNSPRYEAAVTQAGNEIEAARRIQEAGYATDPRYAEKLISIMGQLRTSVARADFSGGL FT " FT misc_feature 69727..70185 FT /note="HMMPfam hit to PF01832, N-acetylmuramoyl-L-alanine FT amidase" FT CDS 70282..71928 FT /transl_table=11 FT /gene="flgK" FT /gene_synonym="flaS" FT /gene_synonym="flaW" FT /locus_tag="BP1382" FT /product="flagellar hook-associated protein 1" FT /note="Similar to Salmonella typhimurium flagellar FT hook-associated protein 1 FlgK or FlaS or FlaW FT SW:FLGK_SALTY (P15932) (552 aa) fasta scores: E(): 1.2e-68, FT 40.32% id in 558 aa, and to Escherichia coli flagellar FT hook-associated protein 1 FlgK or FlaS or FlaW or B1082 FT SW:FLGK_ECOLI (P33235) (546 aa) fasta scores: E(): 3.5e-70, FT 40.1% id in 551 aa" FT /db_xref="GOA:Q7VYG0" FT /db_xref="InterPro:IPR002371" FT /db_xref="UniProtKB/TrEMBL:Q7VYG0" FT /protein_id="CAE41673.1" FT /translation="MNLYNLALTGLNASQAGLETTSHNINNATTVGYSRQRVITSTAGA FT GETGQGFFGRGVQVDTVTRQYDSFLYRQLVGAQGSSAQLSTHLAQVSQVNNLFGDRTVG FT ITPALAGLFTSTNAAATKPADPAVRADMIGKANSLVTQINTAYQELENQRNGLNTQIST FT TVEQANSYLERINDLNKKIVIARGKDGHAPNDLLDQRDQAVSELNQLTGIRFYEQGDAF FT NITLQSGQTLLSGTTVYPLQAVPSASDPKRLTVAYTLPSGPGTTIQVEMNDSEVTGGQL FT GGLLSFRSQSLDAVQDQLGQLAIGLAMAFNAQHRQGYDLDGQPGGDMFGLQAPAAIRNS FT GNTSTGEWQSAYTDADAIRASAYRIQYDGANYTVTRLSDGSSFDVTPSGTPPTLSFDGL FT TLTGSGTPAAGDAWTLQPARDAARDLKQLISDPSKLALADSALGTTNGNNGLKLAELQT FT AKVLGNGSMSLNEMFSQLVNNVGVQTQQVSTANTAQANLVKQQATAHLSVSGVNLNEEY FT VNLTIFQEQYQASAKILDVASTVFDTLLGLR" FT CDS 71962..73494 FT /transl_table=11 FT /gene="flgL" FT /gene_synonym="flaT" FT /gene_synonym="flaU" FT /locus_tag="BP1383" FT /product="flagellar hook-associated protein 3" FT /note="Similar, over the N-terminal region, to Salmonella FT typhimurium flagellar hook-associated protein 3 FlgL or FT FlaT or FlaU SW:FLGL_SALTY (P16326) (317 aa) fasta scores: FT E(): 1.9e-21, 42.78% id in 194 aa, and to Pseudomonas FT aeruginosa flagellar hook-associated protein type 3 FlgL FT TR:Q9AGJ3 (EMBL:AF332547) (433 aa) fasta scores: E(): FT 2.4e-17, 28.29% id in 509 aa" FT /db_xref="GOA:Q7VYF9" FT /db_xref="InterPro:IPR013384" FT /db_xref="UniProtKB/TrEMBL:Q7VYF9" FT /protein_id="CAE41674.1" FT /translation="MRLSTALIYQNGLNGVLNQEAAMARLQEQLSSGRRVLTPADDPLA FT AALAINVSQTSSMNSNYDANRKQAEQALGAQTNTLQSVVKNMQEMLKRVVEAGNGTMSD FT ADRQALVIALKGAREELVGLANATDGNGQYLFSGYKGFTQPYSFDAATGKVTYNGDLGQ FT RGIQVDQSRLMSGGDVGSDIFNSVTSGTLAYIADAGAGNTGTGQYSAVSFDGPRAGNYV FT GRDFRIEFTRDAVTDELQYSVLSDPPVVPPEQPLPANMPYSEGSVIDMNGVSIKLSGQP FT EAGDVFTVETPKSWKMGVQGDAANTGSATLTPVSLPDGLTGKNLSVAFLDDGAGGLLYS FT VTSTPPDPSLPANVPVKPGDVIDIGGLKVKVDGQPAAGDTYAVTTPKSANVDVFDTLND FT LIGALDTPISGDPQAAAALANTLATANKKLNLSLDNVLTVQASVGARLNELEALGNTGA FT QKVLSYVKQLSDLEDVNIYQATSDLLLRQVALQAASLALQRIQGNSLFSMGR" FT misc_feature 72040..72462 FT /note="HMMPfam hit to PF00669, Bacterial flagellin FT N-terminus" FT CDS 73573..75393 FT /transl_table=11 FT /gene="tsr" FT /gene_synonym="cheD" FT /locus_tag="BP1384" FT /product="methyl-accepting chemotaxis protein I" FT /note="Similar to Escherichia coli methyl-accepting FT chemotaxis protein I Tsr or Ched or B4355 SW:MCP1_ECOLI FT (P02942) (551 aa) fasta scores: E(): 1.4e-54, 46.18% id in FT 550 aa, and to Escherichia coli methyl-accepting chemotaxis FT protein II Tar or Chem or B1886 SW:MCP2_ECOLI (P07017) (553 FT aa) fasta scores: E(): 1.3e-53, 45.24% id in 557 aa" FT /db_xref="GOA:Q7VYF8" FT /db_xref="InterPro:IPR003660" FT /db_xref="UniProtKB/TrEMBL:Q7VYF8" FT /protein_id="CAE41675.1" FT /translation="MWSNLKVRTCITLVLGLFLVAMLVSNGMAWLGMSSSNDKLERVNN FT AYSNQAVPAYDAYVMLLRARLNIVSSMMDLQEGRLKESADTLAHAQRQAGEARERFEAF FT LAVAKASSGADRVGAVETAFHAYLEVAARQMEAMQNQRLGEFVQLNPSAQRLNTAFDTA FT ASAYLDRIDTDTDALVDDARAEHLRANTVTLVLIVLALALCAGCGVFIGRAVLRPLKEA FT GQHFDRIAAGDLTARVDVRNSNEIGQLFAGLKRMEESLTRTVAAVRRGVDEINVGSREI FT SAGNTDLSSHTEEQAASLEETAASMEQLASTVKQNADNARQANQLAGVASDVAERGGSA FT VSEVVTTMQDISASSRKISEIVSVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGE FT VRSLAQRSAQAAKEIKVLIEDSVGKVGTGSQQVERVGATMQEIVASVKRVTDIMGEISA FT ASEEQSSGIEQVNRAVSQMDEATQQNAALVEEAAAAAGSLQEQAQRLAEAVSVFRINAG FT EVIDVSARQLAQQRQAPRVAAAPASAAAPEAPPEPAPRLARPAARADVAAEAASVRRPA FT RRPAATEPAARTTAAPSRRRPPADNDWESF" FT misc_feature join(73603..73671,74152..74220) FT /note="2 probable transmembrane helices predicted for FT BP1384 by TMHMM2.0 at aa 28-50 and 211-233" FT misc_feature 74149..74358 FT /note="HMMPfam hit to PF00672, HAMP domain" FT misc_feature 74644..74826 FT /note="HMMPfam hit to PF00015, Methyl-accepting chemotaxis FT protein (MCP) signaling domain" FT variation 75154..75156 FT CDS 75514..77133 FT /transl_table=11 FT /gene="tar" FT /gene_synonym="cheM" FT /locus_tag="BP1385" FT /product="methyl-accepting chemotaxis protein II" FT /note="Similar to Escherichia coli methyl-accepting FT chemotaxis protein II Tar or CheM or B1886 SW:MCP2_ECOLI FT (P07017) (553 aa) fasta scores: E(): 1.8e-64, 45.36% id in FT 529 aa, and to Escherichia coli methyl-accepting chemotaxis FT protein I Tsr or CheD or B4355 SW:MCP1_ECOLI (P02942) (551 FT aa) fasta scores: E(): 1.1e-62, 45.59% id in 522 aa" FT /db_xref="GOA:Q7VYF7" FT /db_xref="InterPro:IPR003660" FT /db_xref="UniProtKB/TrEMBL:Q7VYF7" FT /protein_id="CAE41676.1" FT /translation="MFANLKVRTGLLLALVALALAALVSIALGWESVREGSRSLHALDS FT VSVQQGSLLKDAYAQMLRATIRADIAAVQRRGDAAGTLENERTVKQLMGEAKARIEAFR FT KVPKLSELGRSMETGLTSSFGSFAASLDEMMAALERNDDAAYLQLKNVKAGQASAAFAA FT RLGEFSTNLDKLSSETLAAHETRETIMLYVYAALLLLIVGVIAGSYLYMTRAVVRPLQR FT ASQQFERMAAGDLSARIEGNSRNEIGALLTALRHMQESLTRTVAAVRRGVDEINVGSRE FT ISAGNTDLSSRTEEQAASLEETAASMEQLASTVKQNADNARQANQLAASASDVAESGGS FT AVSEVVSTMDGISASSRKISEIVSVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAG FT EVRSLAQRSAQAAKEIKVLIEDSVDKVGTGSQQVERAGATMQEIVASVKRVTDIMGEIS FT AASEEQSSGIEQVNRAVSQMDEVTQQNAALVEEAAAAAGSLQEQAQRLAEAVSVFKINT FT GEVIEVPAHQLSGYAAPLVAQS" FT misc_feature 75514..75600 FT /note="Signal peptide predicted for BP1385 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.457 between residues 29 and 30" FT misc_feature join(75541..75609,76084..76152) FT /note="2 probable transmembrane helices predicted for FT BP1385 by TMHMM2.0 at aa 10-32 and 191-213" FT misc_feature 76093..76302 FT /note="HMMPfam hit to PF00672, HAMP domain" FT misc_feature 76588..76770 FT /note="HMMPfam hit to PF00015, Methyl-accepting chemotaxis FT protein (MCP) signaling domain" FT CDS join(77312..77575,77577..78752) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1386" FT /product="methyl-accepting chemotaxis protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 88. The sequence has been checked FT and believed to be correct. Similar to Escherichia coli FT methyl-accepting chemotaxis protein II Tar or CheM or B1886 FT SW:MCP2_ECOLI (P07017) (553 aa) fasta scores: E(): 2.1e-43, FT 51.57% id in 318 aa, and to Escherichia coli FT methyl-accepting chemotaxis protein I Tsr or CheD or B4355 FT SW:MCP1_ECOLI (P02942) (551 aa) fasta scores: E(): 4.7e-42, FT 52.17% id in 322 aa" FT /db_xref="PSEUDO:CAE41677.1" FT misc_feature 77381..77530 FT /note="HMMPfam hit to PF00989, PAS domain" FT variation 77575..77581 FT /note="GACGGCG in pertussis; (G)GACGGCG(G) in parapertussis FT and bronchiseptica" FT misc_feature 77823..78032 FT /note="HMMPfam hit to PF00672, HAMP domain" FT misc_feature 78264..78446 FT /note="HMMPfam hit to PF00015, Methyl-accepting chemotaxis FT protein (MCP) signaling domain" FT repeat_region 78784..80014 FT /note="Insertion sequence" FT CDS 78969..79985 FT /transl_table=11 FT /locus_tag="BP1388" FT /product="transposase for IS1663" FT /note="Similar to Neisseria meningitidis putative FT invertase/transposase Nma1800 TR:Q9JTF3 (EMBL:AL162757) FT (318 aa) fasta scores: E(): 2e-17, 28.48% id in 316 aa and FT Acinetobacter spSE19. pilin inverting protein ChnY FT TR:Q9F7E1 (EMBL:AF282240) (324 aa) fasta scores: E(): FT 8.2e-50, 47.516% id in 322 aa" FT /db_xref="GOA:Q7TTN4" FT /db_xref="InterPro:IPR003346" FT /db_xref="UniProtKB/TrEMBL:Q7TTN4" FT /protein_id="CAE41678.1" FT /translation="MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKCKTKVVVN FT TAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQAATALPQVRVSLVNPAQARDFAKA FT LALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELNRKE FT KSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQ FT AGNAILAVMHNRHIDSAQSLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAA FT LVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLCFGVLKNRIPYQPNYAMNG" FT misc_feature 79221..79508 FT /note="HMMPfam hit to PF01548, Transposase" FT misc_feature 79521..79853 FT /note="HMMPfam hit to PF02371, Transposase FT IS116/IS110/IS902 family" FT CDS complement(80032..80820) FT /transl_table=11 FT /gene="fliR" FT /gene_synonym="flaP" FT /locus_tag="BP1389" FT /product="flagellar biosynthetic protein FliR" FT /note="Similar to Escherichia coli flagellar biosynthetic FT protein FliR or FlaP or B1950 SW:FLIR_ECOLI (P33135) (261 FT aa) fasta scores: E(): 3.9e-43, 49.8% id in 259 aa, and to FT Salmonella typhimurium flagellar biosynthetic protein FliR FT or FlaP SW:FLIR_SALTY (P54702) (264 aa) fasta scores: E(): FT 2.5e-42, 49.41% id in 257 aa" FT /db_xref="GOA:Q7VYF6" FT /db_xref="InterPro:IPR002010" FT /db_xref="UniProtKB/TrEMBL:Q7VYF6" FT /protein_id="CAE41679.1" FT /translation="MIAFTMEQLNGWLAQFLWPFVRILALVGAAPLFSESTIPTRVKIG FT LAFMLTIAVAPAIGPMPAVPPSSYAGLFLLSQQVLIGIALGLSMRVVFAAVQTAGEFVG FT LQMGLSFASFFDPATGANTAVLSRLFNIVAMLVFLALDGHLLVLGALVRSFDTLPVAVG FT VLDRNGWGILAEWGTTIFVSGLLLALPLICALLTINLAMGILNRAAPQLSVFAIGFPVS FT LIVGLVLLAIVLPHSGPFLERLFEQGLNTMNNVANGLAGK" FT misc_feature complement(80062..80802) FT /note="HMMPfam hit to PF01311, Bacterial export proteins, FT family 1" FT misc_feature complement(join(80119..80184,80221..80286,80368..80433, FT 80533..80598,80629..80694,80722..80787)) FT /note="6 probable transmembrane helices predicted for FT BP1389 by TMHMM2.0 at aa 11-33, 42-64, 74-96, 129-151, FT 178-200 and 212-234" FT CDS complement(80843..81112) FT /transl_table=11 FT /gene="fliQ" FT /gene_synonym="flaQ" FT /locus_tag="BP1390" FT /product="flagellar biosynthetic protein FliQ" FT /note="Similar to Escherichia coli flagellar biosynthetic FT protein FliQ or FlaQ or B1949 or Z3039 or Ecs2688 FT SW:FLIQ_ECOLI (P33134) (89 aa) fasta scores: E(): 6e-17, FT 60.22% id in 88 aa, and to Salmonella typhimurium flagellar FT biosynthetic protein FliQ or FlaQ SW:FLIQ_SALTY (P54701) FT (89 aa) fasta scores: E(): 5.2e-17, 61.36% id in 88 aa" FT /db_xref="GOA:Q7VYF5" FT /db_xref="InterPro:IPR006305" FT /db_xref="UniProtKB/TrEMBL:Q7VYF5" FT /protein_id="CAE41680.1" FT /translation="MTAETVMSMTYQALKVALALAGPLLLVTLIVGLVISIFQAATQIN FT EMTLSFIPKLLAMCGTLVLLGPWLLGLLTDYIRQLIGQIPMLVS" FT misc_feature complement(80876..81103) FT /note="HMMPfam hit to PF01313, Bacterial export proteins, FT family 3" FT misc_feature complement(join(80897..80962,81008..81073)) FT /note="2 probable transmembrane helices predicted for FT BP1390 by TMHMM2.0 at aa 13-35 and 50-72" FT misc_feature complement(80993..81112) FT /note="Signal peptide predicted for BP1390 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.889) with cleavage site FT probability 0.864 between residues 40 and 41" FT CDS complement(81129..81863) FT /transl_table=11 FT /gene="fliP" FT /gene_synonym="flaR" FT /locus_tag="BP1391" FT /product="flagellar biosynthetic protein FliP" FT /note="Similar to Escherichia coli flagellar biosynthetic FT protein FliP or FlaR or B1948 or Z3038 or Ecs2687 FT SW:FLIP_ECOLI (P33133) (245 aa) fasta scores: E(): 7e-59, FT 67.08% id in 240 aa, and to Salmonella typhimurium FT flagellar biosynthetic protein FliP or FlaR SW:FLIP_SALTY FT (P54700) (245 aa) fasta scores: E(): 4.5e-58, 67.66% id in FT 235 aa. Also similar to BP2240, 40.625% identity (44.175% FT ungapped) in 224 aa overlap." FT /db_xref="GOA:Q7VYF4" FT /db_xref="InterPro:IPR005838" FT /db_xref="UniProtKB/TrEMBL:Q7VYF4" FT /protein_id="CAE41681.1" FT /translation="MAAVAVAAAALWPSGALAQATLPALTATPGPNGSETYSLSMQTLL FT LMTSLSFLPAALLMMTGFTRIIIVLGLLRSAMGTAMSPPNHVLIGLALFLTFYTMSPVF FT DKIYTDAYQPLAAGSIPFETAVERAGAPLHNFMLHQTRENDLTLFANLANLPAMEDPSQ FT VPMRILIPAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPVTVALPFKL FT MLFVLADGWHLLLGSLAQSFYQ" FT misc_feature complement(81147..81728) FT /note="HMMPfam hit to PF00813, FliP family" FT misc_feature complement(join(81159..81224,81246..81311,81552..81608, FT 81645..81710,81804..81863)) FT /note="5 probable transmembrane helices predicted for FT BP1391 by TMHMM2.0 at aa 20-42, 73-95, 107-126, 206-228 and FT 235-257" FT misc_feature complement(81171..81209) FT /note="ScanRegExp hit to PS01061, Flagella transport FT protein fliP family signature 2. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature complement(81306..81353) FT /note="ScanRegExp hit to PS01060, Flagella transport FT protein fliP family signature 1. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature complement(81810..81863) FT /note="Signal peptide predicted for BP1391 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.959 between residues 18 and 19" FT CDS complement(81932..82273) FT /transl_table=11 FT /gene="fliO" FT /gene_synonym="flbD" FT /gene_synonym="flaP" FT /locus_tag="BP1392" FT /product="flagellar protein FliO" FT /note="Similar to Escherichia coli flagellar protein FliO FT or FlbD or FlaP or B1947 SW:FLIO_ECOLI (P22586) (121 aa) FT fasta scores: E(): 2.8e-06, 36.36% id in 110 aa, and to FT Salmonella typhimurium flagellar protein FliO or FlbD or FT FlaP SW:FLIO_SALTY (P54699) (124 aa) fasta scores: E(): FT 2.1e-07, 37.61% id in 109 aa" FT /db_xref="GOA:Q7VYF3" FT /db_xref="InterPro:IPR007442" FT /db_xref="UniProtKB/TrEMBL:Q7VYF3" FT /protein_id="CAE41682.1" FT /translation="MTESAVLRVVIGLALVIAAILVSAWLARRSGLIQRHGGALLRQVG FT GMSLGPRQRVVVLEIEGTWLVLGVTPNQLTTLHTLPAGQLPDPSPAAAGTFAAKLGQAL FT QRGHRVDRP" FT misc_feature complement(82193..82258) FT /note="1 probable transmembrane helix predicted for BP1392 FT by TMHMM2.0 at aa 5-27" FT misc_feature complement(82205..82273) FT /note="Signal peptide predicted for BP1392 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.646) with cleavage site FT probability 0.347 between residues 23 and 24" FT CDS complement(82284..82784) FT /transl_table=11 FT /gene="fliN" FT /gene_synonym="motD" FT /locus_tag="BP1393" FT /product="flagellar motor switch protein FliN" FT /note="Similar to Escherichia coli flagellar motor switch FT protein FliN or MotD or FlaN or B1946 SW:FLIN_ECOLI FT (P15070) (137 aa) fasta scores: E(): 1.3e-23, 61.53% id in FT 130 aa, and to Salmonella typhimurium flagellar motor FT switch protein FliN or MotD or FlaNf SW:FLIN_SALTY (P26419) FT (137 aa) fasta scores: E(): 3.7e-24, 63.84% id in 130 aa" FT /db_xref="GOA:Q7VYF2" FT /db_xref="InterPro:IPR001543" FT /db_xref="UniProtKB/TrEMBL:Q7VYF2" FT /protein_id="CAE41683.1" FT /translation="MTDTNERPDQTGAGAPAPAADDWADALAEQNRAAAPTQADGLKPQ FT DDWADALAEQNAAPAAAAQSVFKPLATKETGQGTDIDLIMDVPVQMTVELGRTRLTIKN FT LLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVVDDKYGIRLTDIITPSERINRLN FT SRR" FT misc_feature complement(82317..82547) FT /note="HMMPfam hit to PF01052, Surface presentation of FT antigens (SPOA) protein" FT CDS complement(82777..83787) FT /transl_table=11 FT /gene="fliM" FT /gene_synonym="fla AII" FT /gene_synonym="fla QII" FT /gene_synonym="CheC2" FT /locus_tag="BP1394" FT /product="flagellar motor switch protein FliM" FT /note="Similar to Escherichia coli flagellar motor switch FT protein FliM or Fla AII or Fla QII or CheC2 or B1945 FT SW:FLIM_ECOLI (P06974) (334 aa) fasta scores: E(): 3.6e-66, FT 52.32% id in 323 aa, and to Salmonella typhimurium FT flagellar motor switch protein FliM or Fla AII or Fla QII FT or CheC2 SW:FLIM_SALTY (P26418) (334 aa) fasta scores: E(): FT 1.6e-67, 52.96% id in 321 aa" FT /db_xref="GOA:Q7VYF1" FT /db_xref="InterPro:IPR001543" FT /db_xref="UniProtKB/TrEMBL:Q7VYF1" FT /protein_id="CAE41684.1" FT /translation="MAYEAFLSQDEVDALLAGVTGESDEKQPAGDEAGAPRAYDLSSPE FT RVVRRRMQTLELINERFARHMRNVLLNFMRRNADITVGAIKILKYADFERNLPVPSNLN FT MIQMKPLRGTALFTYDPNLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRRLLNLTL FT ESYGKSWDPVYPIEFEYVRSEMHTKFASITGNNEVVVVSPFHIEFGATGGDLNICLPYS FT MIEPVRDLLTRPLQDTALEEVDQRWAQQLQRQVRSADIDLVAEFGHIPSSIGELMRMKT FT GDVLPIAVPETVTAHVDGVPLMECGYGVFNGRYALRVQNLINYDDTDSNEAPDHD" FT misc_feature complement(82813..83037) FT /note="HMMPfam hit to PF01052, Surface presentation of FT antigens (SPOA) protein" FT misc_feature complement(83095..83673) FT /note="HMMPfam hit to PF02154, Flagellar motor switch FT protein FliM" FT CDS complement(83790..84338) FT /transl_table=11 FT /gene="fliL" FT /gene_synonym="fla AI" FT /gene_synonym="fla QI" FT /gene_synonym="cheC1" FT /locus_tag="BP1395" FT /product="flagellar protein FliL" FT /note="Similar to Escherichia coli flagellar protein FliL FT or Fla AI or Fla QI or CheC1 or b1944 or z3034 or ecs2683 FT SW:FLIL_ECOLI (P06973) (154 aa) fasta scores: E(): 2.7e-10, FT 43.92% id in 107 aa, and to Salmonella typhimurium FT flagellar protein FliL or Fla AI or Fla QI or CheC1 FT SW:FLIL_SALTY (P26417) (155 aa) fasta scores: E(): 2.4e-11, FT 39.26% id in 163 aa" FT /db_xref="GOA:Q7VYF0" FT /db_xref="InterPro:IPR005503" FT /db_xref="UniProtKB/TrEMBL:Q7VYF0" FT /protein_id="CAE41685.1" FT /translation="MPPRTTLPLRPGGAGRLLRPLLMLLVLALVVAASVAGTWYFMKRM FT QPPVAVPVQLGVGQPQATPMQFVAPPATPPVVPAPIFIPLEAFTVTLQNADSERILHVG FT ITLRVSDEQTRQRIEKYMPEVRSRILMVLSSQSPQAVQTLQGKTEMAHAITEAVKRPFS FT PLPDGQYVTDALFTAFVVQ" FT misc_feature complement(84213..84278) FT /note="1 probable transmembrane helix predicted for BP1395 FT by TMHMM2.0 at aa 20-42" FT misc_feature complement(84231..84338) FT /note="Signal peptide predicted for BP1395 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.976) with cleavage site FT probability 0.663 between residues 36 and 37" FT CDS complement(join(84504..84731,85784..86752)) FT /pseudo FT /transl_table=11 FT /gene="fliK" FT /gene_synonym="flaE" FT /gene_synonym="flaR" FT /locus_tag="BP1398" FT /product="flagellar hook-length control protein FT (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Escherichia coli flagellar FT hook-length control protein FliK or FlaE or FlaR or B1943 FT SW:FLIK_ECOLI (P52614) (375 aa) fasta scores: E(): 1.4e-07, FT 30.02% id in 373 aa, and to Salmonella typhimurium FT flagellar hook-length control protein FliK or FlaE or FlaR FT SW:FLIK_SALTY (P26416) (405 aa) fasta scores: E(): 9e-08, FT 29.97% id in 407 aa" FT /db_xref="PSEUDO:CAE41686.1" FT misc_feature complement(84546..84716) FT /note="ScanRegExp hit to PS00430, TonB-dependent receptor FT proteins signature 1." FT CDS complement(84732..85682) FT /transl_table=11 FT /locus_tag="BP1397" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE41687.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 84732..84763 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(84732..85784) FT misc_feature complement(84768..85301) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(85359..85424) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(85753..85784) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT misc_feature complement(86174..86191) FT /note="ScanRegExp hit to PS00343, Gram-positive cocci FT surface proteins 'anchoring' hexapeptide." FT CDS complement(86884..87330) FT /transl_table=11 FT /gene="fliJ" FT /gene_synonym="flaO" FT /gene_synonym="flaS" FT /locus_tag="BP1399" FT /product="flagellar protein FliJ" FT /note="Similar to Escherichia coli flagellar protein FliJ FT or FlaO or FlaS or B1942 SW:FLIJ_ECOLI (P52613) (147 aa) FT fasta scores: E(): 5.2e-10, 33.1% id in 145 aa, and to FT Salmonella typhimurium flagellar protein FliJ or FlaO or FT FlaS SW:FLIJ_SALTY (P26463) (147 aa) fasta scores: E(): FT 6e-10, 33.79% id in 145 aa" FT /db_xref="GOA:Q7VYE9" FT /db_xref="InterPro:IPR018006" FT /db_xref="UniProtKB/TrEMBL:Q7VYE9" FT /protein_id="CAE41688.1" FT /translation="MPSQLPLDMLIGLAKDSTDEAARELGRLSAERNNAEQQLNMLQDY FT RQDYLQRMQTAMQSGMSAADCHNYQRFIATLDDAIGQQRHVLHRAEAHLNDGRLNWQQQ FT KRKLNSFDTLAQRESRTQALLEARREQRVNDEYSARLVRRQAGF" FT misc_feature complement(86890..87312) FT /note="HMMPfam hit to PF02050, Flagellar FliJ protein" FT CDS complement(87323..88756) FT /transl_table=11 FT /gene="fliI" FT /gene_synonym="fla AIII" FT /gene_synonym="flaC" FT /locus_tag="BP1400" FT /product="flagellum-specific ATP synthase FliI" FT /EC_number="3.6.3.14" FT /note="Similar to Escherichia coli flagellum-specific ATP FT synthase FliI or Fla AIII or FlaC or B1941 SW:FLII_ECOLI FT (P52612) (457 aa) fasta scores: E(): 4.1e-87, 64.95% id in FT 468 aa, and to Salmonella typhimurium flagellum-specific FT ATP synthase FliI or Fla AIII or FlaC SW:FLII_SALTY FT (P26465) (456 aa) fasta scores: E(): 4.1e-87, 65.58% id in FT 462 aa" FT /db_xref="GOA:Q7VYE8" FT /db_xref="InterPro:IPR020005" FT /db_xref="UniProtKB/TrEMBL:Q7VYE8" FT /protein_id="CAE41689.1" FT /translation="MPVADRWQTQLQIGSIRAASTEPWLVSGRITRAAGLVLHTTGLRL FT PVGAACRIELARGHDHWADAEVVGFDGHTLYLMPQSDISGLPPGARVVPAEPAVQRPVP FT LPRKAELNGNAKPQVGRHLPVGNAMLGRVVDGAGRPLDGLGPLAGAEQAPLTALPINPL FT SRAPIDSVLDVGVRAINGLLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADIIVVGLI FT GERGREVKEFIEHNLGPEGLARSVVVAAPADVSPLLRLQGASYATRLAEHFRDQGLDVL FT LIMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPALVERTGMGAPGPNGKAGSIT FT AFYTVLAEGDDQQDPIADSARAILDGHVVLSRHLAEAGHYPAIDIEASISRAMTSLITT FT EQFQQVRRFKQILSRYQRNRDLISVGAYVAGADPQLDDAIARYPRLEAYLQQNIGDSVD FT YGTAIDQLQRSLETREAYA" FT misc_feature complement(87584..88660) FT /note="HMMPfam hit to PF00006, ATP synthase alpha/beta FT family, nucleotide-binding domain" FT misc_feature complement(87587..87616) FT /note="ScanRegExp hit to PS00152, ATP synthase alpha and FT beta subunits signature." FT misc_feature complement(88151..88174) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(88795..89550) FT /transl_table=11 FT /gene="fliH" FT /gene_synonym="fla BIII" FT /gene_synonym="fla AII.3" FT /locus_tag="BP1401" FT /product="flagellar assembly protein FliH" FT /note="Similar to Escherichia coli flagellar assembly FT protein FliH or Fla BIII or Fla AII.3 or B1940 FT SW:FLIH_ECOLI (P31068) (228 aa) fasta scores: E(): 4.8e-14, FT 29.77% id in 225 aa, and to Salmonella typhimurium FT flagellar assembly protein FliH or Fla BIII or Fla AII.3 FT SW:FLIH_SALTY (P15934) (235 aa) fasta scores: E(): 7.2e-15, FT 31.85% id in 226 aa" FT /db_xref="GOA:Q7VYE7" FT /db_xref="InterPro:IPR018035" FT /db_xref="UniProtKB/TrEMBL:Q7VYE7" FT /protein_id="CAE41690.1" FT /translation="MSEALAREPVALPRSAAWRRWQMLSFDEPAEAETPEPAALEPEPE FT PAPDPEELLREWRATAERAGHAAGHQAGQEQGQREGYAAGHAQGLAAGRAEGHAEGLAQ FT GREDARQQAERLHALAQACAASVARLEDNMGQSLLTLALDIAGQVLRTTLAEHPEAMVA FT AVREVLQINPATGAAMRLWVHPDDLELVRTHLADELNEANWRLQADESITRGGCRTETA FT YGDVDATLQTRWRRVAASLGRSAAWEETA" FT misc_feature complement(88837..89358) FT /note="HMMPfam hit to PF02108, Flagellar assembly protein FT FliH" FT CDS complement(89543..90553) FT /transl_table=11 FT /gene="fliG" FT /gene_synonym="fla BII" FT /gene_synonym="fla AII.2" FT /locus_tag="BP1402" FT /product="flagellar motor switch protein FliG" FT /note="Similar to Escherichia coli flagellar motor switch FT protein FliG or Fla BII or Fla AII.2 or b1939 or z3029 or FT ecs2678 SW:FLIG_ECOLI (P31067) (331 aa) fasta scores: E(): FT 1.7e-70, 61.39% id in 329 aa, and to Salmonella typhimurium FT flagellar motor switch protein FliG or Fla BII or Fla AII.2 FT SW:FLIG_SALTY (P15933) (331 aa) fasta scores: E(): 6.3e-70, FT 60.48% id in 329 aa" FT /db_xref="GOA:Q7VYE6" FT /db_xref="HSSP:1QC7" FT /db_xref="InterPro:IPR000090" FT /db_xref="UniProtKB/TrEMBL:Q7VYE6" FT /protein_id="CAE41691.1" FT /translation="MKNDGKPLDGMTRSAVLMMSLGEDAAAEVFKYLSAREVQQVGAAM FT ASLKQVTRGDVAVVLEEFRQEADQFMAVTLGSDDYIRTVLTKALGSDRAAGLIEDILEA FT GEGGSGIDALNWLDPHTVAELIGDEHPQIIATILVHLERDRAASVLAMLSERMRNDVML FT RIATFGGVQPAALSELTDVLNSVLAGQGAKRSKMGGVRTAAEILNMMNSSQEEAVVESL FT RERDSDLAQKIIDEMFVFDNLLDVEDRAIQLILKEIDNDTLMVALKGAGDELRNKFLRN FT MSSRAAEMLREDLEAQGPIRMSKVEGEQKKILQIARRLAESGQIVLGTQGDDAYV" FT misc_feature complement(89570..89899) FT /note="HMMPfam hit to PF01706, FliG C-terminal domain" FT CDS complement(90543..92219) FT /transl_table=11 FT /gene="fliF" FT /gene_synonym="fla BI" FT /gene_synonym="fla AII.1" FT /locus_tag="BP1403" FT /product="flagellar M-ring protein FliF" FT /note="Similar to Escherichia coli flagellar M-ring protein FT FliF or Fla BI or Fla AII.1 or B1938 SW:FLIF_ECOLI (P25798) FT (552 aa) fasta scores: E(): 7.9e-61, 46.15% id in 572 aa, FT and to Salmonella typhimurium flagellar M-ring protein FliF FT or Fla BI or Fla AII.1 SW:FLIF_SALTY (P15928) (559 aa) FT fasta scores: E(): 1.1e-62, 45.84% id in 554 aa" FT /db_xref="GOA:Q7VYE5" FT /db_xref="InterPro:IPR006182" FT /db_xref="UniProtKB/TrEMBL:Q7VYE5" FT /protein_id="CAE41692.1" FT /translation="MNQQATLSASLMARFPVLEKLRALPKPVLLGAAAALIAVVAAVAM FT WSREPDYKVLFSNLDDRDGGAIVSALDQMNVPYRFSDNGSALLVPAERVYDTRMQLASQ FT GLPRGGSVGFELLDNTRFGASQFAEQINYQRGLEGELARSIEAMHTVQHARVHLAMPRQ FT SLFVRDRQAPTASVLLNLYPGRSLSDAQVSAVAWLVASSVPELTAENVSIVDQNGRLLS FT APLGEGRGMDADQLRFVREMEQRTVERILTILNPLVGPGNVHAQASAEIDFARREETSE FT VYRPNQEPGQAAVRSQQTSDSRQTGPNAAQGVPGALSNQPPANAQAPIVNPPAVAGTPQ FT QQQQQRAQQQAAGATTTQTQQGAAAPSNDRHDATINYEVDRTISHVKQPVGMLKRLSVA FT VVVNYLPNKEGESEALPPEELNKLTNLVREAMGYSEARGDSLNLVNSQFNDTPVAVPLW FT RDPELIAMIKTALGWLFGLILAFWLYRKIRPVVTDYFYPQVDPEVAAAQRQEAEREAQA FT AARTREVNRYEDNLQLARDMAGKDPRAVAMVLRSWMSKDEK" FT misc_feature complement(join(90765..90830,92079..92135)) FT /note="2 probable transmembrane helices predicted for FT BP1403 by TMHMM2.0 at aa 28-47 and 463-485" FT misc_feature complement(91533..92159) FT /note="HMMPfam hit to PF01514, Secretory protein of FT YscJ/FliF family" FT misc_feature complement(92088..92219) FT /note="Signal peptide predicted for BP1403 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.842) with cleavage site FT probability 0.543 between residues 44 and 45" FT CDS 92532..92864 FT /transl_table=11 FT /gene="fliE" FT /gene_synonym="flaN" FT /gene_synonym="fla AI" FT /locus_tag="BP1404" FT /product="flagellar hook-basal body complex protein FliE" FT /note="Similar to Escherichia coli flagellar hook-basal FT body complex protein FliE or FlaN or Fla AI or B1937 or FT Z3027 or Ecs2676 SW:FLIE_ECOLI (P25797) (103 aa) fasta FT scores: E(): 3e-12, 47.22% id in 108 aa, and to Salmonella FT typhimurium flagellar hook-basal body complex protein FliE FT or FlaN or Fla AI SW:FLIE_SALTY (P26462) (103 aa) fasta FT scores: E(): 1.9e-11, 45.79% id in 107 aa" FT /db_xref="GOA:Q7VYE4" FT /db_xref="InterPro:IPR001624" FT /db_xref="UniProtKB/TrEMBL:Q7VYE4" FT /protein_id="CAE41693.1" FT /translation="MAVSGLSGIESMLSQMRAVVRAAQSGGATEAELAPGPSGFAAELQ FT RSIRSVSQAQNAASDQAKAFELGAPGISLNDVMIDLQKASLGFQTSVQVRNRLVAAYKE FT ISSMAV" FT misc_feature 92616..92861 FT /note="HMMPfam hit to PF02049, Flagellar hook-basal body FT complex protein FliE" FT CDS complement(92878..93273) FT /transl_table=11 FT /locus_tag="BP1405" FT /product="hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VYE3" FT /protein_id="CAE41694.1" FT /translation="MTAQDQIVVLTQSDQIRSTLQERRHPDCQIVISGIDQRPWPVRIL FT GPDAKDGYFFWRPLDQACPDPVMLARMADEDEPPLAFHAQTADGARIHFCVDSPVTLRF FT GDGSIAVLSLFPSAVRHTCARPPQAPA" FT CDS complement(93283..93609) FT /transl_table=11 FT /locus_tag="BP1406" FT /product="putative flagellar protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1473 TR:Q9I3N9 (EMBL:AE004576) (111 aa) fasta FT scores: E(): 2e-07, 43.18% id in 88 aa, and to Bacillus FT subtilis YlqH protein TR:O34867 (EMBL:AJ000975) (93 aa) FT fasta scores: E(): 2.7e-07, 42.68% id in 82 aa" FT /db_xref="GOA:Q7VYE2" FT /db_xref="InterPro:IPR006135" FT /db_xref="UniProtKB/TrEMBL:Q7VYE2" FT /protein_id="CAE41695.1" FT /translation="MNTPAPPTPATADADPNRPVAVALSYDGGEAAPRVVAKGYGQLAD FT TIVRTAREHGLHVHESRELVGLLMQVDLDAHIPPQLYTAVAELLAWLYRLEARELPEAL FT APRA" FT CDS complement(join(93606..93935,93940..94881)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1407" FT /product="hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 314. The frameshift occurs within FT a dimeric tract of (CCAA)2. The sequence has been checked FT and believed to be correct. Similar to Pseudomonas FT aeruginosa polyhydroxyalkanoate synthesis protein PhaF or FT Pa5060 TR:Q9HUC3 (EMBL:AE004919) (309 aa) fasta scores: FT E(): 0.002, 27.77% id in 270 aa, and to Xenopus laevis skin FT secretory protein Xp2 precursor SW:XP2_XENLA (P17437) (439 FT aa) fasta scores: E(): 0.0015, 34.42% id in 244 aa" FT /db_xref="PSEUDO:CAE41696.1" FT variation complement(93937..93944) FT /note="(CCAA)2 in pertussis; (CCAA)1 in parapertussis" FT CDS complement(94878..95228) FT /transl_table=11 FT /gene="fliT" FT /locus_tag="BP1408" FT /product="flagellar protein FliT" FT /note="Similar to Salmonella typhimurium flagellar protein FT FliT SW:FLIT_SALTY (P26611) (122 aa) fasta scores: E(): FT 0.0035, 26.78% id in 112 aa, and to Escherichia coli FT flagellar protein FliT or B1926 or Z3016 or Ecs2665 FT SW:FLIT_ECOLI (P26610) (121 aa) fasta scores: E(): 0.009, FT 28.94% id in 114 aa" FT /db_xref="GOA:Q7VYE1" FT /db_xref="InterPro:IPR008622" FT /db_xref="UniProtKB/TrEMBL:Q7VYE1" FT /protein_id="CAE41697.1" FT /translation="MTALTQHAPVLEIYQDIANLTSRMLAAANASNWDLVLNHGQEYVC FT LVERLRELEPGEPLDEAARGMKFDLLVRILENDAAVRDLALPQLARLSDLLGRMKRQQS FT LLATYSGKANGT" FT CDS complement(95276..95704) FT /transl_table=11 FT /gene="fliS" FT /locus_tag="BP1409" FT /product="flagellar protein FliS" FT /note="Similar to Salmonella typhimurium flagellar protein FT FliS SW:FLIS_SALTY (P26609) (135 aa) fasta scores: E(): FT 4.5e-19, 47.86% id in 117 aa, and to Escherichia coli FT flagellar protein FliS or B1925 SW:FLIS_ECOLI (P26608) (136 FT aa) fasta scores: E(): 1.8e-11, 33.33% id in 123 aa" FT /db_xref="GOA:Q7VYE0" FT /db_xref="HSSP:1VH6" FT /db_xref="InterPro:IPR003713" FT /db_xref="UniProtKB/TrEMBL:Q7VYE0" FT /protein_id="CAE41698.1" FT /translation="MTYAARRPTGSYSVKSYSDIGLETQVMSATPERLITLLYAGARAA FT IAQARLHLEAGRIVERGQAIGKAIRIVDEGLKLGLNQNAGGEVAANLARLYDYITRTLL FT TANLKADKEQLDIADRLLADLSEAWQASVDHPAPAVPA" FT misc_feature complement(95297..95671) FT /note="HMMPfam hit to PF02561, Flagellar protein FliS" FT CDS complement(95712..97085) FT /transl_table=11 FT /gene="fliD" FT /gene_synonym="flbC" FT /gene_synonym="flaV" FT /locus_tag="BP1410" FT /product="flagellar hook-associated protein 2" FT /note="Similar to Escherichia coli flagellar FT hook-associated protein 2 FliD or FlbC or FlaV or B1924 FT SW:FLID_ECOLI (P24216) (467 aa) fasta scores: E(): 1.8e-32, FT 35.24% id in 471 aa, and to Salmonella typhimurium FT flagellar hook-associated protein 2 FliD or FlbC or FlaV FT SW:FLID_SALTY (P16328) (466 aa) fasta scores: E(): 6.2e-27, FT 34.18% id in 471 aa" FT /db_xref="GOA:Q7VYD9" FT /db_xref="InterPro:IPR003481" FT /db_xref="UniProtKB/TrEMBL:Q7VYD9" FT /protein_id="CAE41699.1" FT /translation="MATISSLGSSGLELEGILEKLQAAEEKKLTLITARQASYETRISA FT YSKIQAAVEAVQKAAATLGSIDTLSAVKAVVSGDGLSVKTAAGAVPGQYTVNIDKLATA FT QNLQSGQLDSRTDKHGTGGSIEIVQKDGTTTTVTLGEDTSLNGIVKAINGTDGLDVRAT FT VISDGNGKHYLMLNNKTEGTETAVTRITVSGNQEVADILDFDAANAGASNLTVQLAAQK FT AELTINGIPVVSDTNTVETAIDGLTLTLTKQSAAPLTVTVSSDPSVAATAVNDFVKAYN FT GLQTTIADLTAFDVKAEKQSALTGDGTTRNIQSAIAAALRVATGEGTLRTLSQLGITTD FT PKTGSLKTDTEKLEAALRDNPADVARIFSGPFGLGEKVKLATEQILGDEGSIKIRQEGL FT EETLESLQNQYDRQKLSIAATIEAYRKQFVQLDVFVTQMNNTSNYLSQQFAALSGTKK" FT misc_feature complement(95766..97061) FT /note="HMMPfam hit to PF02465, Flagellar hook-associated FT protein 2" FT CDS complement(97226..97603) FT /transl_table=11 FT /gene="flaG" FT /locus_tag="BP1411" FT /product="putative flagellar protein" FT /note="Similar to Pseudomonas aeruginosa FlaG TR:O33420 FT (EMBL:L81176) (128 aa) fasta scores: E(): 0.033, 31.35% id FT in 118 aa, and to Riftia pachyptila endosymbiont FlaG FT TR:Q9ZFD5 (EMBL:AF105060) (115 aa) fasta scores: E(): FT 0.049, 28.42% id in 95 aa" FT /db_xref="GOA:Q7VYD8" FT /db_xref="InterPro:IPR005186" FT /db_xref="UniProtKB/TrEMBL:Q7VYD8" FT /protein_id="CAE41700.1" FT /translation="MAVSPINAAAPALVSVAPAPVPAQPAAAVAPAAAAANGGGAQSAT FT QDQYGAPKLPMDRALEEINAQLKAWSTQLQFEIDPDVHQVVVSIVDAETGDVLRTIPSE FT AVIRIAKMIVKMQGNAVETTA" FT CDS 97866..99173 FT /transl_table=11 FT /gene="folC" FT /gene_synonym="dedC" FT /locus_tag="BP1412" FT /product="FolC bifunctional protein [includes: FT folylpolyglutamate synthase and dihydrofolate synthase]" FT /EC_number="6.3.2.17" FT /note="Similar to Escherichia coli FolC bifunctional FT protein [includes: folylpolyglutamate synthase and FT dihydrofolate synthase] FolC or DedC or B2315 SW:FOLC_ECOLI FT (P08192) (422 aa) fasta scores: E(): 4.1e-62, 48% id in 427 FT aa, and to Neisseria gonorrhoeae FolC bifunctional protein FT [includes: folylpolyglutamate synthase and dihydrofolate FT synthase] FolC TR:Q50990 (EMBL:Z68205) (424 aa) fasta FT scores: E(): 1.8e-72, 49.18% id in 429 aa" FT /db_xref="GOA:Q7VYD7" FT /db_xref="HSSP:1FGS" FT /db_xref="InterPro:IPR018109" FT /db_xref="UniProtKB/TrEMBL:Q7VYD7" FT /protein_id="CAE41701.1" FT /translation="MSTSRPDASADLPAWLQYLESIHAKAIDLGLDRVRQVAGRLDLSL FT DGVNFVVGGTNGKGSTCAMLESILLAAGYRVGLYTSPHLIDFNERARINGEIASDAALV FT QQFEAVEAARGDVSLTYFEFTTLAILRLFAQSRLDAVGLEVGLGGRLDAVNIVDADCSI FT ITSIDLDHTDWLGDTREKIGFEKAHIYRAGRPAICADPVPPQSLLDHVQAIGADLWLLG FT RDYNYSGDRQQWAYGGRAQRRNALAYPALRGANQLLNAAAALAALEAVRDRLPVPQQAV FT RLGLLQASLPGRFQILPGQPTVILDVAHNPHAAAVLAQNLDNMGFHPYTHAVFGMLADK FT NVDGVIARLGSRVDHWYCAGLPGPRGLDGQALAGHVRQVLPEAEGAAETPTVQACADPA FT AAYAAAREKAGEGDRIIVFGSFLTVASVLQALGRKI" FT misc_feature 98010..98798 FT /note="HMMPfam hit to PF01225, Mur ligase family, catalytic FT domain" FT misc_feature 98013..98084 FT /note="ScanRegExp hit to PS01011, Folylpolyglutamate FT synthase signature 1. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 99366..100064 FT /transl_table=11 FT /locus_tag="BP1413" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa5052 TR:Q9HUC7 (EMBL:AE004918) (231 aa) fasta FT scores: E(): 0.00036, 35.71% id in 168 aa" FT /db_xref="InterPro:IPR007730" FT /db_xref="UniProtKB/TrEMBL:Q7VYD6" FT /protein_id="CAE41702.1" FT /translation="MVLAAVIVLPMILDSEPVPVDSDIPIRVPDRNSAFQPTVNDPQAA FT APQPEQPAPQAPAGTPEAGAPQPPALASAPPQTPPPGQTPAQPQTPPAAQPPATPPQQA FT ATPPAAPKPEAKPEPKPAKPAAPARSDDGARAMALLEGRSPPPAQSKPAANGNFVLQVA FT SYTTQADAQARRGKLHQAGVTNAFVEQASINGKQQYRLRVGPFPSREAAQAAQARLRTL FT GYDNGFIAAQ" FT CDS 100061..100549 FT /transl_table=11 FT /gene="cvpA" FT /gene_synonym="dedE" FT /locus_tag="BP1414" FT /product="colicin V production protein" FT /note="Similar to Escherichia coli colicin V production FT protein CvpA or DedE or B2313 SW:CVPA_ECOLI (P08550) (162 FT aa) fasta scores: E(): 1.5e-10, 32.7% id in 159 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa3109 FT TR:Q9HZB0 (EMBL:AE004735) (180 aa) fasta scores: E(): FT 1.1e-13, 36.25% id in 160 aa" FT /db_xref="GOA:Q7VYD5" FT /db_xref="InterPro:IPR003825" FT /db_xref="UniProtKB/TrEMBL:Q7VYD5" FT /protein_id="CAE41703.1" FT /translation="MTGFDFVVLTILAVSAVLGLVRGLLKEILSLLAYLLAFVAAIWWG FT PTVYVWLEPYIETALLRMGIAYAVVFIIVLLAVGLVNMTLAALIRTTGLTPADHGLGAM FT FGLARGLVLVLVLVALAGFTPLPQEDWWRDAMFSHSATEAVRQVKSWLPPSLATWLPY" FT misc_feature 100067..100513 FT /note="HMMPfam hit to PF02674, Colicin V production FT protein" FT misc_feature join(100076..100135,100148..100216,100259..100327, FT 100361..100429) FT /note="4 probable transmembrane helices predicted for FT BP1414 by TMHMM2.0 at aa 6-25, 30-52, 67-89 and 101-123" FT CDS 100591..102111 FT /transl_table=11 FT /gene="purF" FT /locus_tag="BP1415" FT /product="amidophosphoribosyltransferase" FT /EC_number="2.4.2.14" FT /note="Similar to Escherichia coli FT amidophosphoribosyltransferase PurF or B2312 SW:PUR1_ECOLI FT (P00496) (504 aa) fasta scores: E(): 4.5e-109, 60.04% id in FT 488 aa, and to Vibrio cholerae FT amidophosphoribosyltransferase Vc1004 TR:Q9KT99 FT (EMBL:AE004182) (504 aa) fasta scores: E(): 1.6e-117, 61.8% FT id in 487 aa" FT /db_xref="GOA:Q7VYD4" FT /db_xref="HSSP:1ECB" FT /db_xref="InterPro:IPR002375" FT /db_xref="UniProtKB/TrEMBL:Q7VYD4" FT /protein_id="CAE41704.1" FT /translation="MCGIVGVIGRGPVNQLLYDSLLLLQHRGQDAAGIATLQGNHFNMY FT KAHGLVRDVFRTRNMRALPGTSGVGQVRYPTAGSSASEEEAQPFYVNAPFGIMFAHNGN FT LTNWRELRESLYRVDRRHINTNSDSEVLLNVLAHELQSAASGVSLDDDTIFRAVSAVHQ FT RVKGAYAVVAQISGYGMLAFRDPHGIRPLCIGRQETEEGVEWMAASESVALEGSGFAFV FT RDVEPGEAIFVDLDGRMTSRQCADNAQLVPCIFEYVYFARPDSLIDGVSVYDARLRMGE FT YLADKVARSMRLGDIDVVMPIPDSSRPAAMQLAHRLGLDYREGLIKNRYVGRTFIMPGQ FT AVRRKSVRQKLNAIGMEFKGKNVLLVDDSIVRGTTSREIVDMARAAGANKVYFASAAPP FT VRFPNVYGIDMPTQKELIATGRTDDEIARTIGADALIYQDLQDMQQAVRDINPRLSRFE FT ASCFDGEYVTGDITAEYLARLGQSRDSSAGDEEAGGLQFNMGYAANDA" FT misc_feature 100591..100608 FT /note="ScanRegExp hit to PS00443, Glutamine FT amidotransferases class-II active site." FT misc_feature 100594..101175 FT /note="HMMPfam hit to PF00310, Glutamine amidotransferases FT class-II" FT misc_feature 101359..101850 FT /note="HMMPfam hit to PF00156, Phosphoribosyl transferase FT domain" FT misc_feature 101677..101715 FT /note="ScanRegExp hit to PS00103, Purine/pyrimidine FT phosphoribosyl transferases signature. Confirmed by FT InterPro eMOTIF pattern match." FT CDS complement(102155..102631) FT /transl_table=11 FT /gene="dsbB" FT /gene_synonym="roxB" FT /locus_tag="BP1416" FT /product="disulfide bond formation protein B" FT /note="Similar to Escherichia coli disulfide bond formation FT protein B DsbB or RoxB or B1185 or Z1948 or Ecs1680 FT SW:DSBB_ECOLI (P30018) (176 aa) fasta scores: E(): 3.1e-05, FT 28.47% id in 144 aa, and to Pseudomonas aeruginosa FT disulfide bond formation protein B 1 DsbB1 or Pa5256 FT SW:DSB1_PSEAE (P21482) (163 aa) fasta scores: E(): 8.3e-08, FT 30.57% id in 157 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VYD3" FT /protein_id="CAE41705.1" FT /translation="MTRYRERLLFLIAILCFGAVGLALLSQHVFDMPPCAWCVLQRLIY FT LCIGVVALAGALAGAIAARLAAMLAALLAICGIVAAWYQYSVAAKMLSCDQTFADRFMS FT ATGLDGALPWLFGIYATCMDATVAVLGIEYAIWSLALFVIVLALALPAALRRNA" FT misc_feature complement(join(102170..102223,102236..102301, FT 102365..102430,102446..102502,102542..102607, FT 102746..102811,102848..102913,102959..103024, FT 103103..103159,103172..103237,103286..103351)) FT /note="11 probable transmembrane helices predicted for FT BP1416 by TMHMM2.0 at aa 15-37, 53-75, 79-98, 124-146, FT 161-183, 195-217, 263-285, 298-317, 322-344, 365-387 and FT 391-409" FT CDS complement(join(102682..102684,102686..103396)) FT /pseudo FT /transl_table=11 FT /gene="marC" FT /locus_tag="BP1416A" FT /product="putative multiple antibiotic resistance protein FT (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 237. Similar to Escherichia coli FT multiple antibiotic resistance protein MarC or B1529 FT SW:MARC_ECOLI (P31123) (221 aa) fasta scores: E(): 2e-13, FT 27.18% id in 217 aa, and to Salmonella typhimurium multiple FT antibiotic resistance protein MarC SW:MARC_SALTY (Q56068) FT (221 aa) fasta scores: E(): 8.3e-14, 30.14% id in 209 aa" FT /db_xref="PSEUDO:CAE41706.1" FT variation complement(102685) FT /note="(C)TAA in pertussis (-)TAA (stop codon) in pertussis FT and bronchiseptica" FT misc_feature complement(102734..103366) FT /note="HMMPfam hit to PF01914, Uncharacterised protein FT family UPF0056" FT CDS complement(103435..106032) FT /transl_table=11 FT /gene="glnD" FT /locus_tag="BP1417" FT /product="[protein-PII] uridylyltransferase" FT /EC_number="2.7.7.59" FT /note="Similar to Escherichia coli [protein-PII] FT uridylyltransferase GlnD or B0167 SW:GLND_ECOLI (P27249) FT (890 aa) fasta scores: E(): 5.8e-103, 38.78% id in 825 aa, FT and to Pseudomonas aeruginosa [protein-pii] FT uridylyltransferase GlnD or Pa3658 SW:GLND_PSEAE (Q9Z9H0) FT (900 aa) fasta scores: E(): 5e-119, 40.86% id in 881 aa" FT /db_xref="GOA:Q7VYD2" FT /db_xref="InterPro:IPR013546" FT /db_xref="UniProtKB/Swiss-Prot:Q7VYD2" FT /protein_id="CAE41707.1" FT /translation="MPHVDLNPLKQRMQAARAAAVAQFRQHPRPDMLLTELRRIVDQAL FT RELVKLCPLPAGATLAAVGSYGRGELYPHSDVDLLILLPQPPSAADARAVEALVAALWD FT LGLEPGHSVRTLEDCEREARGDITVETALLESRWLAGSRTLMKRLDSAMQARLDAAVFF FT QAKRVEMQQRHAHYQDTPYALEPNCKESPGGLRDLQVILWMARAAGFGHSWREVAQAGL FT LTSSEARDLRRAEQAFKRLRIELHLLTGRREDRVLFDLQPGLAAVYGIASTATRRASEL FT LMQRYYWAARLVTQLNVILVQNIEERLFPRPDSDARLIDDDFRNLRERLDIVREDGFER FT NPTLLLRAFLVMQQHPELIGMSARTLRAIWHSRHRIDAQFRRNPVNRKLFLQILQQPRG FT IVHELRRMTMLNILPRYLPVFRRIVGQMQHDLFHVYTVDQHTLAVVRNLRRFTMPEHAQ FT EYPLASQLIAGLDRHWLLYVAALFHDIAKGRGGDHSELGAREVRRFAQDHGLDPTDAEL FT VEFLVRHHLLMSAVAQKRDLSDPQVVRDFAAQVGDERRLAALYLLTVADIRGTSPRVWN FT AWKGKLLEDLFRLTLAALGGAHADAHTVLTERKDEAARLTRLAGLRDDAREAFWNQLDI FT AYFLRHDASEIAWHTRHLYYQVAPDEPVVRVRPTEHGEGLQVMVYTRDAPDLFVTTCGY FT FDAKSLSVQDARVHTTRHGWALDSFIVLAPEGFADLRAQATLVEHELAERLRDPHAARH FT AHAPRRLPHSHARRSRVFPVMPQAELSPDERSQSWRLSVTATDRPGLLYALARVFAEHG FT VDLIMAKIMTLGERVEDVFIVSGSALERPRSQMQFERAILDALAGDEPRQQAA" FT misc_feature complement(103462..103671) FT /note="HMMPfam hit to PF01842, ACT domain" FT misc_feature complement(103798..104010) FT /note="HMMPfam hit to PF01842, ACT domain" FT misc_feature complement(104362..104724) FT /note="HMMPfam hit to PF01966, HD domain" FT misc_feature complement(105631..105933) FT /note="HMMPfam hit to PF01909, Nucleotidyltransferase FT domain" FT CDS complement(106062..106883) FT /transl_table=11 FT /gene="map" FT /locus_tag="BP1418" FT /product="methionine aminopeptidase" FT /EC_number="3.4.11.18" FT /note="Similar to Escherichia coli, and methionine FT aminopeptidase Map or B0168 or Z0178 or Ecs0170 FT SW:AMPM_ECOLI (P07906) (264 aa) fasta scores: E(): 1.5e-53, FT 53.99% id in 263 aa, and to Xylella fastidiosa methionine FT aminopeptidase Xf0111 TR:Q9PH35 (EMBL:AE003865) (259 aa) FT fasta scores: E(): 5.7e-59, 60.08% id in 248 aa" FT /db_xref="GOA:Q7VYD1" FT /db_xref="HSSP:1C24" FT /db_xref="InterPro:IPR001714" FT /db_xref="UniProtKB/TrEMBL:Q7VYD1" FT /protein_id="CAE41708.1" FT /translation="MGIVTDPADLAKMRAACQDAAKILDFITPYVKPGVTTGELDKLCL FT AYLTDELKVKSATIGYAPPGYPPFTGAICTSVNHQVCHGIPGDKVLKNGDSLNIDVTII FT KDGWFGDTSRMYHVGEPSILSRRLTDITYDCMWKGIEQVRNGATLGDIGHAIQKYAEAQ FT GFSVVREFCGHGIGQRFHEDPQVLHYGKPGTGVKLVTGMLFTVEPMINAGRREIRQLAD FT GWTVVTRDHSLSAQWEHTVLVTDTGYEVLTVSPGMPAPPAFVTRPVEIPAL" FT misc_feature complement(106137..106877) FT /note="HMMPfam hit to PF00557, metallopeptidase family M24" FT misc_feature complement(106317..106373) FT /note="ScanRegExp hit to PS00680, Methionine aminopeptidase FT subfamily 1 signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 107610..108359 FT /transl_table=11 FT /gene="rpsB" FT /locus_tag="BP1419" FT /product="30S ribosomal protein S2" FT /note="Similar to Escherichia coli 30S ribosomal protein S2 FT RpsB or B0169 or Z0180 or Ecs0171 SW:RS2_ECOLI (P02351) FT (240 aa) fasta scores: E(): 5.1e-52, 61.3% id in 230 aa, FT and to Spirulina platensis 30S ribosomal protein S2 RpsB FT SW:RS2_SPIPL (P34831) (251 aa) fasta scores: E(): 2.9e-57, FT 62.14% id in 243 aa" FT /db_xref="GOA:Q7VYD0" FT /db_xref="HSSP:1VI6" FT /db_xref="InterPro:IPR001865" FT /db_xref="UniProtKB/Swiss-Prot:Q7VYD0" FT /protein_id="CAE41709.1" FT /translation="MSLMREMLEAGVHFGHQTRYWNPKMAPYIFGHRNKIHIINLEQTV FT AKYQEASKFVKQLVARGGNILFVGTKRAARELVATEAARCGMPYVDARWLGGMLTNFKT FT VKSSIKRLKDMEAMVADGGFERMTKKEGLLFQRELDKLNKSIGGIKDMNGLPDALFVID FT VGYHKIAVAEAKVLGIPVVAVVDTNHSPDGIDHVIPGNDDSARAIALYAKGMADAVLEG FT REQNINGLVEEIGEGQEEFVEVQDNQA" FT misc_feature 107619..107654 FT /note="ScanRegExp hit to PS00962, Ribosomal protein S2 FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 107628..108278 FT /note="HMMPfam hit to PF00318, Ribosomal protein S2" FT CDS 108543..109421 FT /transl_table=11 FT /gene="tsf" FT /locus_tag="BP1420" FT /product="elongation factor Ts" FT /note="Similar to Escherichia coli elongation factor Ts Tsf FT or B0170 or Z0181 or Ecs0172 SW:EFTS_ECOLI (P02997) (282 FT aa) fasta scores: E(): 1.1e-40, 49.65% id in 286 aa, and to FT Neisseria meningitidis and elongation factor Ts Tsf or FT Nma0327 or Nmb2102 TR:Q9JRH4 (EMBL:AL162752) (284 aa) fasta FT scores: E(): 1e-47, 51.72% id in 290 aa" FT /db_xref="GOA:Q7VYC9" FT /db_xref="InterPro:IPR000449" FT /db_xref="UniProtKB/Swiss-Prot:Q7VYC9" FT /protein_id="CAE41710.1" FT /translation="MAEITAALVKELREKTDAPMMECKKALTEAEGDLARAEEILRVKL FT GNKASKAAARVTAEGLIGLYIAADGKQGAVIEVNCETDFVAKNTDFIDFINKLAELVAT FT QNPADVAALSALPFGEGTVETTRTALVGKIGENISVRRFERIQTPNSLASYVHGGKIGV FT LVEFSGAEEVGKDLAMHIAATKPKALNADGVNAEDIAAERSVAEQKAAESGKPAEIVAK FT MVEGSVQKFLKEVTLLSQPFVKNDKQTIEQMLKEKGASITKFVLFVVGEGIEKKTADFA FT SEVAAAAAGRA" FT misc_feature 108549..108668 FT /note="HMMPfam hit to PF02094, TS-N domain" FT misc_feature 108711..109355 FT /note="HMMPfam hit to PF00889, Elongation factor TS" FT misc_feature 108771..108803 FT /note="ScanRegExp hit to PS01127, Elongation factor Ts FT signature 2. Confirmed by InterPro eMOTIF pattern match." FT CDS 109519..110235 FT /transl_table=11 FT /gene="pyrH" FT /gene_synonym="smbA" FT /locus_tag="BP1421" FT /product="uridylate kinase" FT /EC_number="2.7.4.-" FT /note="Similar to Escherichia coli uridylate kinase PyrH or FT SmbA or B0171 or Z0182 or Ecs0173 SW:PYRH_ECOLI (P29464) FT (240 aa) fasta scores: E(): 2e-45, 55.41% id in 231 aa, and FT to Neisseria meningitidis uridylate kinase PyrH or Nma0326 FT or Nmb2103 TR:Q9JQT5 (EMBL:AL162752) (239 aa) fasta scores: FT E(): 2e-58, 69.82% id in 232 aa" FT /db_xref="GOA:Q7VYC8" FT /db_xref="InterPro:IPR015963" FT /db_xref="UniProtKB/Swiss-Prot:Q7VYC8" FT /protein_id="CAE41711.1" FT /translation="MSSRSYKRVLLKLSGEALMGEDAFGINRSTIVRMTDEIAEVAALG FT VELAIVIGGGNIFRGVAPGAQGMDRATADYMGMMATIMNALALQDALKHKGVDTRVQSA FT LNIDQVVEPYIRPKALRYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEIGAEIVLKATK FT VDGIYSADPNKDPTATRYARISFDEVIVRRLEVMDATAFALCRDQKLPIKVFSINKSGA FT LKRAVSGEDEGTLVHV" FT misc_feature 109573..110088 FT /note="HMMPfam hit to PF00696, Amino acid kinase family" FT CDS 110250..110810 FT /transl_table=11 FT /gene="frr" FT /gene_synonym="rrf" FT /locus_tag="BP1422" FT /product="ribosome recycling factor" FT /note="Similar to Escherichia coli ribosome recycling FT factor Frr or Rrf or B0172 or Z0183 or Ecs0174 SW:RRF_ECOLI FT (P16174) (185 aa) fasta scores: E(): 3.4e-33, 57.69% id in FT 182 aa, and to Neisseria meningitidis ribosome recycling FT factor Frr or Nma0080 or Nmb0187 TR:Q9JR52 (EMBL:AL162752) FT (185 aa) fasta scores: E(): 2.1e-36, 59.78% id in 184 aa" FT /db_xref="GOA:Q7VYC7" FT /db_xref="InterPro:IPR015998" FT /db_xref="UniProtKB/Swiss-Prot:Q7VYC7" FT /protein_id="CAE41712.1" FT /translation="MSVADIRKSAETRMAKSLETLKASLAKIRTGRAHTGILDHVQVEY FT YGSPVPISQVANVNLVDARTISVQPYEKSMAGPIEKAIRESDLGLNPVSMGETIRVPMP FT ALTEERRRDLTKVVKSEGEDAKVAVRNLRREANEALKKLVKDKEISEDDERRAQDDVQK FT LTDRAVGDIDKMIVQKEAEIMTV" FT misc_feature 110307..110801 FT /note="HMMPfam hit to PF01765, Ribosome recycling factor" FT CDS 110977..111741 FT /transl_table=11 FT /gene="uppS" FT /gene_synonym="rth" FT /locus_tag="BP1423" FT /product="undecaprenyl pyrophosphate synthetase" FT /EC_number="2.5.1.31" FT /note="Similar to Escherichia coli undecaprenyl FT pyrophosphate synthetase UppS or Rth or B0174 or Z0185 or FT Ecs0176 SW:UPPS_ECOLI (Q47675) (253 aa) fasta scores: E(): FT 7.5e-44, 51.4% id in 249 aa, and to Neisseria meningitidis FT undecaprenyl pyrophosphate synthetase Nmb0186 TR:Q9K1G6 FT (EMBL:AE002375) (248 aa) fasta scores: E(): 2.4e-50, 54.28% FT id in 245 aa" FT /db_xref="GOA:Q7VYC6" FT /db_xref="InterPro:IPR018520" FT /db_xref="UniProtKB/Swiss-Prot:Q7VYC6" FT /protein_id="CAE41713.1" FT /translation="MALSSTQAIPETGDIPRHVAIIMDGNGRWATRRHLPRTAGHAKGV FT HAVRRVVEACGRRGVRYLTLFAFSSENWRRPADEVSLLMRLFVQALEREVDKLQDQGVR FT LHVVGDLSAFEPKLQELIAQAQERTEHNDRLHLTVAANYGGRWDILQATRAMLRADPGL FT AQDPDRIDEARLAEHLSMAWAPEPDLFIRTGGEQRISNFLVWQLAYAEFYFTEQFWPDF FT GADELDAAFEWYRTRERRFGRTSAQLRGGAKR" FT misc_feature 111040..111705 FT /note="HMMPfam hit to PF01255, Putative undecaprenyl FT diphosphate synthase" FT CDS 111761..112618 FT /transl_table=11 FT /gene="cdsA" FT /gene_synonym="cds" FT /locus_tag="BP1424" FT /product="phosphatidate cytidylyltransferase" FT /EC_number="2.7.7.41" FT /note="Similar to Escherichia coli phosphatidate FT cytidylyltransferase CdsA or Cds or B0175 or Z0186 or FT Ecs0177 SW:CDSA_ECOLI (P06466) (249 aa) fasta scores: E(): FT 1.1e-15, 33.72% id in 255 aa, and to Haemophilus influenzae FT phosphatidate cytidylyltransferase CdsA or Cds or Hi0919 FT SW:CDSA_HAEIN (P44937) (288 aa) fasta scores: E(): 1.4e-19, FT 32.51% id in 286 aa" FT /db_xref="GOA:Q7VYC5" FT /db_xref="InterPro:IPR000374" FT /db_xref="UniProtKB/TrEMBL:Q7VYC5" FT /protein_id="CAE41714.1" FT /translation="MLGQRIITAAVLLAVLALTLALANPWWFVALLALGAACAAWEWLR FT LTVRQPLSGALCVGLAAALLAAMLAMAQAWIQGGVSGLRLEVWVGYWLTPAVVAVWLLG FT AGTAVARGRADAPAASLGWTLFAIPAVLAAWSVLALMYLSRGGAYVVSLLALVWVADIA FT AYFAGRAFGKRKLAPRVSPGKTVAGAVAGVLGAVAWIALSSQWDGTYGQALVERWSWWL FT ALPAAALLGVVSIVGDLFESLLKRRAGRKDSSALLPGHGGVYDRIDAILPVAPLALLMS FT GVLF" FT misc_feature 111761..111829 FT /note="Signal peptide predicted for BP1424 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.637 between residues 23 and 24" FT misc_feature 111764..112615 FT /note="HMMPfam hit to PF01148, Phosphatidate FT cytidylyltransferase" FT misc_feature join(111773..111826,111836..111904,111923..111991, FT 112019..112087,112121..112189,112202..112261, FT 112298..112366,112424..112492) FT /note="8 probable transmembrane helices predicted for FT BP1424 by TMHMM2.0 at aa 5-22, 26-48, 55-77, 87-109, FT 121-143, 148-167, 180-202 and 222-244" FT misc_feature 112484..112564 FT /note="ScanRegExp hit to PS01315, Phosphatidate FT cytidylyltransferase signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 112615..113814 FT /transl_table=11 FT /gene="dxr" FT /locus_tag="BP1425" FT /product="1-deoxy-D-xylulose 5-phosphate reductoisomerase" FT /EC_number="1.1.1.-" FT /note="Similar to Escherichia coli 1-deoxy-D-xylulose FT 5-phosphate reductoisomerase Dxr or B0173 SW:DXR_ECOLI FT (P45568) (398 aa) fasta scores: E(): 1.4e-64, 51.4% id in FT 391 aa, and to Pseudomonas aeruginosa 1-deoxy-D-xylulose FT 5-phosphate reductoisomerase Dxr or Pa3650 SW:DXR_PSEAE FT (Q9KGU6) (396 aa) fasta scores: E(): 3e-77, 59.24% id in FT 395 aa" FT /db_xref="GOA:Q7VYC4" FT /db_xref="InterPro:IPR013512" FT /db_xref="UniProtKB/Swiss-Prot:Q7VYC4" FT /protein_id="CAE41715.1" FT /translation="MTRFQRVAVLGSTGSIGDSTLDVIARHPDRLGVYALSAYSRMDKL FT AAQAAACGAAVVVVPDDAAAARFRAAWRGKAAMPEVRVGPRALAETAAAPECTTVMAAI FT VGAAGLPAALAAAQAGKRVLLANKEALVAAGSLFMAAVRENGAELLPIDSEHNAIFQCM FT PQGARAAAPTAPAPGVRRLLLTASGGPFRRQDPADLHEVTPAQACAHPNWSMGRKISVD FT SATMLNKGLEVIEAHWLFAMPSERIDVLIHPQSVVHSMVEYDDGSVLAQLGQPDMRTPI FT AYGLGFPERLASGVGLLDLTRWGRLDFEQPDLQRFPCLALSFAALRAGQPACVALNAAN FT EVAVAAFLEGRLRYTWIARVIEAVLEWQAKQASVTLTSLDDVLDLDARARSFAGNLGLA FT " FT misc_feature 112633..113793 FT /note="HMMPfam hit to PF02670, 1-deoxy-D-xylulose FT 5-phosphate reductoisomerase" FT CDS 113854..115188 FT /transl_table=11 FT /locus_tag="BP1426" FT /product="putative membrane protein" FT /note="Similar to Escherichia coli inner membrane protein FT EcfE TR:AAL01378 (EMBL:AF407012) (450 aa) fasta scores: FT E(): 4e-55, 40.17% id in 448 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa3649 TR:Q9HXY3 FT (EMBL:AE004785) (450 aa) fasta scores: E(): 7.8e-55, 43.45% FT id in 451 aa" FT /db_xref="GOA:Q7VYC3" FT /db_xref="InterPro:IPR006025" FT /db_xref="UniProtKB/TrEMBL:Q7VYC3" FT /protein_id="CAE41716.1" FT /translation="MLFTLLAFVVALGTLITFHELGHYWIARLCGVRVLRFSVGFGRVL FT ARRTDRHGTEWAISAIPLGGYVKMQDDPPAGASAAEAARSFNAQPVGRRIAIVAAGPLF FT NLFLAVVLYAGLNLAGTEVPAPVVGQPAAGTPAAQAGLMAGDRIEAVQGRAVDSWNDAR FT WRLLDVLSSQGEAQLEVRGPGGAARGLVLQVPGGNRLDPADGDPLAETGLRLAQPKPVV FT REVIAGGAGEQAGLRGGDLIVAAGQAADLDAGALVALIQRHAGQPLALTVQRGADRLTL FT TVVPRAESVQGQEVGRIGVQLGGDIPMVTVRYGVIDSVWRGVQRTWDTAWLSLRMMGRM FT VLGEVSWRNISGPVTIADYAGQTARIGLKAYIAYLALISISLGVLNLLPIPMLDGGHLL FT YYLVEIVKGSPVSDRWIDIGQRAGIGLLAGLMGLALFNDFARLFT" FT misc_feature join(113866..113934,114136..114204,114964..115032, FT 115105..115173) FT /note="4 probable transmembrane helices predicted for FT BP1426 by TMHMM2.0 at aa 5-27, 95-117, 371-393 and 418-440" FT misc_feature 113899..113928 FT /note="ScanRegExp hit to PS00142, Neutral zinc FT metallopeptidases, zinc-binding region signature." FT misc_feature 114382..114678 FT /note="HMMPfam hit to PF00595, PDZ domain (Also known as FT DHR or GLGF)." FT CDS 115241..117577 FT /transl_table=11 FT /locus_tag="BP1427" FT /product="probable surface antigen" FT /note="Similar to Pseudomonas aeruginosa probable outer FT membrane protein Pa3648 TR:Q9HXY4 (EMBL:AE004784) (797 aa) FT fasta scores: E(): 7.3e-103, 39.77% id in 802 aa, and to FT Xylella fastidiosa outer membrane antigen Xf1046 TR:Q9PEI2 FT (EMBL:AE003941) (784 aa) fasta scores: E(): 1.9e-88, 37.58% FT id in 785 aa" FT /db_xref="GOA:Q7VYC2" FT /db_xref="InterPro:IPR000184" FT /db_xref="UniProtKB/TrEMBL:Q7VYC2" FT /protein_id="CAE41717.1" FT /translation="MSLRRMFHHKKGVIPGLLAAALLAPALAHAFEPFVVRDIRVEGIQ FT RTDAGTVFGYLPVKVGEKFTDEEATEAVRRLYGTGFFSDVQIQTDNNVVVVVVQERPTI FT ASISFNGMREFDSKAITKSLAQVGFGEGRIFDQSMLERAEYELKEQYLAKGKYGVEVTA FT TVTPLPRNRVGVSFDVFEGEVAKIREIRVVGSKAFSEGELLDQFDLTTPGWLTWYTNTD FT KYSREKLEGDIERLRSFYLDQGYLEFTVEPPQVTISPDRKDIYITITVHEGEPYKVREV FT KLAGNLMGLDSEINNLVEIKPGEVFSAAKANNSAKAITNYLGDLGYAFANVNPNPQLDR FT AKHEADVTFYVDPSRRVYVRRIQIGGNTRTRDEVVRREMRQQEAAWYDAGDIKVSRDRV FT DRLGYFNEVNVKTDPVPGSPDQVDVNVDVKEKPTGIINLGVGYGSSEKAILSAGISEDN FT VFGSGTNLTLQLNTSKTNRAVVLSHTDPYFTKDGISRTTSAYYRVTEPWDNNDGDYRVK FT AMGLGMNFGVPISEYDRIFLGGTFERNQIDLYNNSPQAYRDFVDQYGNSTNALIFNTGW FT SKDTRDSALAPTKGAYTRLKGDFSTMDLKYYLLTAQQQYYLPLGRSYTLALNGMIDYGR FT SYGGLDYPVIKNVYAGGIGTVRGYEGASLGPRDRLTGDYIGGSRRMVANAQLYLPFPGA FT SKDRTLRWFVFTDAGQVAAGSGMSCTAGKPDSEVEDPCGWRFSAGIGLSWQSPLGPLQL FT SYARPLNSKSGDDTQAFQFQIGTGF" FT misc_feature 115241..115330 FT /note="Signal peptide predicted for BP1427 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.755 between residues 30 and 31" FT misc_feature 115268..117574 FT /note="HMMPfam hit to PF01103, Bacterial surface antigen" FT misc_feature 115274..115333 FT /note="1 probable transmembrane helix predicted for BP1427 FT by TMHMM2.0 at aa 20-39" FT misc_feature 116453..116476 FT /note="ScanRegExp hit to PS00867, Carbamoyl-phosphate FT synthase subdomain signature 2." FT misc_feature 117365..117397 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 117703..118266 FT /transl_table=11 FT /locus_tag="BP1428" FT /product="putative outer membrane protein" FT /note="Similar to Salmonella typhimurium outer membrane FT protein OmpH precursor OmpH SW:OMPH_SALTY (P16974) (161 aa) FT fasta scores: E(): 3.6e-06, 28.84% id in 156 aa, and to FT Neisseria meningitidis putative outer membrane protein FT Nma0086 TR:Q9JX30 (EMBL:AL162752) (166 aa) fasta scores: FT E(): 8.9e-13, 39.63% id in 164 aa" FT /db_xref="GOA:Q7VYC1" FT /db_xref="InterPro:IPR005632" FT /db_xref="UniProtKB/TrEMBL:Q7VYC1" FT /protein_id="CAE41718.1" FT /translation="MMSDFALNTSGSKRAKRGAGKLGVSLALAGALLFGSSAAVTAQAQ FT GTKIGFVNTERILRESGPAKAAQSKIESEFKRRDDELQRLSSSLRSQAEKFDKDAPVLS FT ESDRVKRQRELSNLDMDLQRKRREFQEDFNRRRNEEFSSIVTKANDAIKRIAEQENYDL FT IIQDAVTVNPRIDITDKVIQSLGR" FT misc_feature 117703..117834 FT /note="Signal peptide predicted for BP1428 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.488 between residues 41 and 42" FT misc_feature 117766..117834 FT /note="1 probable transmembrane helix predicted for BP1428 FT by TMHMM2.0 at aa 38-60" FT CDS 118275..119366 FT /transl_table=11 FT /gene="lpxD" FT /gene_synonym="firA" FT /locus_tag="BP1429" FT /product="UDP-3-O-[3-hydroxymyristoyl] glucosamine FT N-acyltransferase" FT /EC_number="2.3.1.-" FT /note="Similar to Escherichia coli FT UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase FT LpxD or FirA or OmsA or B0179 SW:LPXD_ECOLI (P21645) (340 FT aa) fasta scores: E(): 4.1e-42, 43.27% id in 342 aa, and to FT Pseudomonas aeruginosa UDP-3-O-3-hydroxylauroyl LpxD or FT Pa3646 TR:Q9HXY6 (EMBL:AE004784) (353 aa) fasta scores: FT E(): 1.2e-48, 51.22% id in 328 aa" FT /db_xref="GOA:Q7VYC0" FT /db_xref="InterPro:IPR007691" FT /db_xref="UniProtKB/Swiss-Prot:Q7VYC0" FT /protein_id="CAE41719.1" FT /translation="MPVLLDPENALALDVLLAGIDAQGLDWHLSAPDAADLPRIRGIGT FT LSSAGNEEISFLSNPRYQNQLATTRAAAVIVTPDVAQARQEQGASGHVLVVCKHPYLLY FT ARLAQWFERASRPAGPAGVHPSAVVDPSAEIDADVRVGAQCVIEAGARIGRGARLGPGC FT VIGAGSTVGADSLLHPRVTLYAGVHVGERAIIHSGAVLGADGFGFAPDPTLGRGAWGKI FT PQLGEVRVGNDVEIGANTTIDRGALDDTIVGDGVKLDNQIMVAHNVRIGAHTAIAACVG FT IAGSTTIGERCTIGGASMLSGHLAIADDVNISGGTAVTSNIAKAGRYTGVYPYAEHSEW FT QRNAAVIQQLALLRRRLRALERE" FT misc_feature 118668..118721 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 118722..118775 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 118731..118817 FT /note="ScanRegExp hit to PS00101, Hexapeptide-repeat FT containing-transferases signature." FT misc_feature 118776..118829 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 118830..118883 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 118953..119006 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 119019..119072 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 119028..119114 FT /note="ScanRegExp hit to PS00101, Hexapeptide-repeat FT containing-transferases signature." FT misc_feature 119073..119126 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 119127..119180 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT CDS 119438..119893 FT /transl_table=11 FT /gene="fabZ" FT /gene_synonym="sefA" FT /locus_tag="BP1430" FT /product="(3R)-hydroxymyristol-[acyl carrier protein] FT dehydratase" FT /EC_number="4.2.1.-" FT /note="Similar to Escherichia coli FT (3R)-hydroxymyristol-[acyl carrier protein] dehydratase FT FabZ or SefA or B0180 or z0192 or ecs0182 SW:FABZ_ECOLI FT (P21774) (151 aa) fasta scores: E(): 7.5e-27, 53.37% id in FT 148 aa, and to Aquifex aeolicus FabZ or Aq_056 FT SW:FABZ_AQUAE (O66468) (150 aa) fasta scores: E(): 8.3e-26, FT 51% id in 149 aa" FT /db_xref="GOA:Q7VYB9" FT /db_xref="InterPro:IPR010084" FT /db_xref="UniProtKB/Swiss-Prot:Q7VYB9" FT /protein_id="CAE41720.1" FT /translation="MELDIKGIMDRLPHRYPMLLIDRVLEMVPGKSIVAIKNVSINEPF FT FTGHFPHHPVMPGVLIVEAMAQASALFSFTDENGGLKCDGAKTAYYLVGIDGARFRKPV FT VPGDQLRLEVEAERLSRTICKYQGRALVDGQLVAEAKLMCAIRSLEE" FT misc_feature 119444..119854 FT /note="HMMPfam hit to PF01377, Thioester dehydrase" FT CDS 119894..120688 FT /transl_table=11 FT /gene="lpxA" FT /locus_tag="BP1431" FT /product="acyl-[acyl-carrier-protein]--UDP-N-acetylglucos FT amine O-acyltransferase" FT /EC_number="2.3.1.129" FT /note="Similar to Escherichia coli FT acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine FT O-acyltransferase LpxA or B0181 SW:LPXA_ECOLI (P10440) (262 FT aa) fasta scores: E(): 1.4e-51, 53.81% id in 262 aa, and to FT Neisseria meningitidis FT acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine FT O-acyltransferase LpxA or Nma0090 SW:LPXA_NEIMA (Q9JX26) FT (258 aa) fasta scores: E(): 8.8e-53, 52.87% id in 261 aa" FT /db_xref="GOA:Q7VYB8" FT /db_xref="HSSP:1J2Z" FT /db_xref="InterPro:IPR010137" FT /db_xref="UniProtKB/TrEMBL:Q7VYB8" FT /protein_id="CAE41721.1" FT /translation="MSGNIHPTAVVDPAAQIDSSVVIGPYSVVGPGVSIAAGTEVGAHC FT VLDGVTSIGRDNRFYRFCSIGGMPQDKKYSGEPTRLVIGDRNTVREFTTFNTGTVQDGG FT VTSIGDDNWIMAYVHIAHDCHIGNNTILANSVQLGGHVQVGDWAIVGGLTGVHQFAKIG FT AHSMTGGNSSLMQDAPPFVLAAGNPCRPVGVNVEGLKRRGFSAAAISALRDAYKSIYRR FT GLSLDEGRAELRARQQAEPDVAEHLQTMLDFLDASTRGIIRP" FT misc_feature 119933..119986 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 119987..120040 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 120041..120094 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 120206..120259 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 120260..120313 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 120314..120367 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature 120368..120421 FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT CDS 120685..121866 FT /transl_table=11 FT /gene="lpxB" FT /gene_synonym="pgsB" FT /locus_tag="BP1432" FT /product="lipid-A-disaccharide synthase" FT /EC_number="2.4.1.182" FT /note="Similar to Escherichia coli lipid-A-disaccharide FT synthase LpxB or PgsB or B0182 SW:LPXB_ECOLI (P10441) (382 FT aa) fasta scores: E(): 3.4e-46, 40.76% id in 390 aa, and to FT Pseudomonas aeruginosa lipid-A-disaccharide synthase LpxB FT or Pa3643 SW:LPXB_PSEAE (Q9HXY8) (378 aa) fasta scores: FT E(): 1.3e-52, 45.75% id in 389 aa" FT /db_xref="GOA:Q7VYB7" FT /db_xref="InterPro:IPR003835" FT /db_xref="UniProtKB/Swiss-Prot:Q7VYB7" FT /protein_id="CAE41722.1" FT /translation="MSLRIGMVAGEPSGDLLAGRIIAGLQARAPGVHCAGIGGPQMAAR FT GFEAWHPMHALTVFGYIDAFKRIPSLLSTYGDVKRRLLAEPPSVFVGIDAPDFNLRLEH FT QLRQAGTPTVHFVGPSIWAWRYERINKIRAAVSHMLVLFPFEEALYRKEGIPVTYVGHP FT LAGVIPMQPDRAAARARLGIDADARVLAILPGSRSSEIRLLAPRFLQAAAELVRRDPRL FT QCVVPMVNPQRRAEFEAIATQHPVPGLRCVTAAEGQGETPVAWSVMEASNAVLVASGTA FT TLETALYKRPMVISYVLSPWMRRIMAWKSGQQRPYLPWVGLPNVLLRDFAVPELLQDEA FT TPAALAEATWQALTDEAGAARIEARFTALHQDLLRDTPALAAQAILEVADGAA" FT misc_feature 120697..121839 FT /note="HMMPfam hit to PF02684, Lipid-A-disaccharide FT synthetase" FT CDS 121853..122458 FT /transl_table=11 FT /gene="rnhB" FT /locus_tag="BP1433" FT /product="ribonuclease HII" FT /EC_number="3.1.26.4" FT /note="Similar to Escherichia coli ribonuclease HII RnhB or FT B0183 SW:RNH2_ECOLI (P10442) (198 aa) fasta scores: E(): FT 2.2e-37, 58.91% id in 185 aa, and to Pseudomonas aeruginosa FT ribonuclease HII RnhB or Pa3642 TR:Q9HXY9 (EMBL:AE004784) FT (201 aa) fasta scores: E(): 3.5e-37, 59.66% id in 181 aa" FT /db_xref="GOA:Q7VYB6" FT /db_xref="InterPro:IPR001352" FT /db_xref="UniProtKB/Swiss-Prot:Q7VYB6" FT /protein_id="CAE41723.1" FT /translation="MEQPDLFGTLAPLPAIIAGVDEAGRGPLAGAVYAAAVILDPDRPV FT DGLADSKVLKAEQREALAVQIRAQALAWFVASASVQEIDSLNILRATMLAMQRAVAGLA FT MAPELAMVDGNQAPKLRCAVQTVIKGDALVPAISAASILAKTARDADLLRLHALYPQYG FT FDQHKGYGTPQHLSLLREHGPCPEHRRSFAPIKAYGAP" FT misc_feature 121904..122437 FT /note="HMMPfam hit to PF01351, Ribonuclease HII" FT CDS 122455..123228 FT /transl_table=11 FT /locus_tag="BP1434" FT /product="putative RNA methyltransferase" FT /note="Similar to Neisseria meningitidis putative RNA FT methyltransferase Nma1351 TR:Q9JUE8 (EMBL:AL162755) (261 FT aa) fasta scores: E(): 7.7e-33, 42.91% id in 261 aa, and to FT Synechocystis sp hypothetical tRNA/rRNA methyltransferase FT Slr1673 SW:YG73_SYNY3 (P74261) (274 aa) fasta scores: E(): FT 5.4e-18, 32.95% id in 264 aa" FT /db_xref="GOA:Q7VYB5" FT /db_xref="HSSP:1GZ0" FT /db_xref="InterPro:IPR001537" FT /db_xref="UniProtKB/TrEMBL:Q7VYB5" FT /protein_id="CAE41724.1" FT /translation="MKHLSSRDNPAVKALHKLAAGGGRRDGRILLDGVHLCQAWLAHQG FT TPLQALFDVARLDHPEIRALAGQVPPQHCLALDSRLLQGLASVESGQGVVFVARAPEPA FT LPERIDENCVLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHF FT ALHIHEHLDLEAVLPRLDVPLVATTLARSGSLYDTDLPARCAWVFGHEGQGVAEALLRA FT AALRVHIPHESAAVESLNVGAAAAICLFEQRRQRR" FT misc_feature 122785..123204 FT /note="HMMPfam hit to PF00588, SpoU rRNA Methylase family" FT CDS complement(123240..124067) FT /transl_table=11 FT /locus_tag="BP1435" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1769 TR:Q9I2X0 (EMBL:AE004602) (274 aa) fasta FT scores: E(): 1.2e-51, 49.44% id in 269 aa, and to Neisseria FT meningitidis hypothetical protein Nmb0619 TR:Q9K0I1 FT (EMBL:AE002417) (273 aa) fasta scores: E(): 1.2e-48, 48.16% FT id in 272 aa" FT /db_xref="GOA:Q7VYB4" FT /db_xref="InterPro:IPR005177" FT /db_xref="UniProtKB/Swiss-Prot:Q7VYB4" FT /protein_id="CAE41725.1" FT /translation="MTSTPIERAVYIVSDSTGITAETFSHSVLSQFDEVNFKPVRLPFI FT DTLDKAREVVARINRNALEAGVPPIVFSTLVNPEILALVRQSNGVFLDLFGTFVSHIEQ FT ALGLKSSHSIGRSHMAANSEKYRNRIDAINFSLAHDDGQFVNQLDQADVILLGVSRCGK FT TPTSLYLAMQYAVKAANFPLTPDDFERGALPKTIAPYRGKLFGLSIQPERLAEVRNERR FT PNSHYARLEQCRYEVAEAERMMRREGISWLSTTTKSIEEIATTVLQEVGLERV" FT misc_feature complement(123576..123599) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 124229..126592 FT /transl_table=11 FT /gene="ppsA" FT /gene_synonym="pps" FT /locus_tag="BP1436" FT /product="phosphoenolpyruvate synthase" FT /EC_number="2.7.9.2" FT /note="Similar to Escherichia coli phosphoenolpyruvate FT synthase PpsA or Pps or B1702 SW:PPSA_ECOLI (P23538) (791 FT aa) fasta scores: E(): 8.5e-201, 65.34% id in 785 aa, and FT to Neisseria meningitidis phosphoenolpyruvate synthase FT Nmb0618 TR:Q9K0I2 (EMBL:AE002417) (794 aa) fasta scores: FT E(): 1.6e-209, 67.89% id in 788 aa" FT /db_xref="GOA:Q7VYB3" FT /db_xref="InterPro:IPR018274" FT /db_xref="UniProtKB/TrEMBL:Q7VYB3" FT /protein_id="CAE41726.1" FT /translation="MSYVVSFEQLRMTDVDSVGGKNASLGEMISQLAGAGVRVPGGFAT FT TAQAFRDFLQASGLDKRIADRLATLNPEDVRELASAGAEIRQWVIDAPFSPEFEQAIRT FT AFAELDADGKGSFAVRSSATAEDLPDASFAGQQETFLNVVGVDDVLDKIRHVFASLYND FT RAISYRVHKGYAHAEVALSAGIQRMVRSDKGSAGVMFTIDTESGFQDVVFITSSYGLGE FT TVVQGAVNPDEFYVFKPSLERGNYPIVSRRIGSKLIKMEFDPERPEGRAVRTVDVPVSE FT RNRYSLTDDEVIELARYAVIIEKHYQRPMDIEWGRDGVDGKIYILQARPETVKSQQGVN FT DVQQRYRLKATGQVLVTGRAIGQKIGAGKVRVVADISEMDKVQAGDVLVTDMTDPNWEP FT VMKRASAIITNRGGRTCHAAIIARELGIPAVVGCGDATDLLKDGQAVTASCAEGDEGRI FT YDGLIETEVEEVRRGEMPPIDVKIMMNVGNPQLAFDFAQIPNAGVGLARLEFIINNNIG FT IHPKAVLDYPNVDGELKKAVESAARGHASPRAFFVEKLAEGVATIGAAFWPKPVIVRMS FT DFKSNEYRKLVGGSRYEPEEENPMLGLRGASRYIAADFEECFRMECEALKKVRDEMGLT FT NVEIMVPFVRTLGQARKVVELLAAHGLARGENGLKLIMMCEVPSNAILAEQFLEYFDGF FT SIGSNDMTQLTLGLDRDSGMELLAADFDERDDAVKFMLRRAIKACLAANKYVGICGQGP FT SDHPDFAQWLKDEGILSMSLNPDTVVETWQQLAK" FT misc_feature 124232..125314 FT /note="HMMPfam hit to PF01326, Pyruvate phosphate dikinase, FT PEP/pyruvate binding domain" FT misc_feature 125387..126481 FT /note="HMMPfam hit to PF00391, PEP-utilizing enzyme, mobile FT domain" FT misc_feature 125462..125497 FT /note="ScanRegExp hit to PS00370, PEP-utilizing enzymes FT phosphorylation site signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 126302..126358 FT /note="ScanRegExp hit to PS00742, PEP-utilizing enzymes FT signature 2. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(126660..127379) FT /transl_table=11 FT /locus_tag="BP1437" FT /product="probable class-I glutamine amidotransferase" FT /note="Similar to Xylella fastidiosa GMP synthase xf0560 FT TR:Q9PFU7 (EMBL:AE003903) (240 aa) fasta scores: E(): FT 7.8e-30, 46.15% id in 234 aa, and to Caulobacter crescentus FT glutamine amidotransferase, class-i family protein cc0409 FT TR:Q9AB25 (EMBL:AE005713) (238 aa) fasta scores: E(): FT 1.3e-14, 33.88% id in 242 aa" FT /db_xref="GOA:Q7VYB2" FT /db_xref="InterPro:IPR017926" FT /db_xref="UniProtKB/TrEMBL:Q7VYB2" FT /protein_id="CAE41727.1" FT /translation="MTAALPVLILHTGNPAAALRAAHGSYAEMLRQAAGLDAAGTHVVA FT SYKDEAPRAPGAYRAALITGSPAMVTDRAPWSEAAADWLRQAAGAGLPMFGICYGHQLL FT AHALGGVVGDNPAGRELGTLPVELLPAAATDPLLAGLPAAFDAQMMHEQAVLAAPPGAT FT VLARSAQDAHQILRLAPRIYTAQFHPEFTPGFVAAHLRHHAALYAAHGLDVEGLARAAG FT PTPLAASLVRRFLACCA" FT misc_feature complement(126762..127328) FT /note="HMMPfam hit to PF00117, Glutamine amidotransferase FT class-I" FT misc_feature complement(127068..127103) FT /note="ScanRegExp hit to PS00442, Glutamine FT amidotransferases class-I active site. Confirmed by FT InterPro eMOTIF pattern match." FT CDS 127503..127928 FT /transl_table=11 FT /locus_tag="BP1438" FT /product="putative membrane protein" FT /note="Similar to Neisseria meningitidis putative membrane FT protein Nma1383 TR:Q9JUC5 (EMBL:AL162755) (135 aa) fasta FT scores: E(): 4e-06, 29.92% id in 137 aa, and to FT Mycobacterium tuberculosis hypothetical 15.2 kDa protein FT Cy277.08 precursor Rv1487 or Mtcy277.08 TR:P71767 FT (EMBL:Z79701) (144 aa) fasta scores: E(): 0.012, 30.07% id FT in 143 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VYB1" FT /protein_id="CAE41728.1" FT /translation="MWIWFGLAAVALIGEVGSGTFYLLLVALGLAAGGIAAWLGADLAW FT QLVACGLVALLGLLALRRTGVLKKREVNAARNADVNLDIGQSVMVDAWSDAGTTQVYYR FT GAQWQAELAHGQPRQAGRHIIAEIRGTRLVLAPAPAA" FT misc_feature 127503..127595 FT /note="Signal peptide predicted for BP1438 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.622) with cleavage site FT probability 0.235 between residues 31 and 32" FT misc_feature join(127521..127589,127632..127685) FT /note="2 probable transmembrane helices predicted for FT BP1438 by TMHMM2.0 at aa 7-29 and 44-61" FT CDS complement(127963..128913) FT /transl_table=11 FT /locus_tag="BP1439" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE41729.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 127963..127994 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(127963..129015) FT misc_feature complement(127999..128532) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(128590..128655) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(128984..129015) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 129031..129957 FT /transl_table=11 FT /locus_tag="BP1440" FT /product="putative membrane protein" FT /note="Similar to Rickettsia conorii hypothetical 34.0 kDa FT protein Rc0452 TR:AAL02990 (EMBL:AE008609) (312 aa) fasta FT scores: E(): 2.1e-55, 53.33% id in 300 aa, and to Neisseria FT meningitidis membrane protein Gna1220 TR:Q9JPN3 FT (EMBL:AF226519) (315 aa) fasta scores: E(): 3.4e-53, 64.83% FT id in 310 aa" FT /db_xref="GOA:Q7VYB0" FT /db_xref="InterPro:IPR001972" FT /db_xref="UniProtKB/TrEMBL:Q7VYB0" FT /protein_id="CAE41730.1" FT /translation="MIDVSTVVLIVIVILALMIVVKAIAIVPQQHAWVVERLGKFDRVL FT SPGAGFVIPFIERVSYKHSLKEIPLDVPSQVCITRDNTQLQVDGVLYFQVTDPMRASYG FT SSNYISAITQLAQTTLRSVIGKLELDRTFEEREFINSTIVASLDEAALNWGVKVLRYEI FT KDLTPPNEILRAMQAQITAEREKRALIAASEGRRQEQINIATGEREAAIARSEGEKQAQ FT INQAQGEAAAVLAIAEATAKAIEQVGEAVRQPGGMEAVNLKVAERYVDAFSNVAKEGNT FT LILPSNLSDVGGLIASAMTIVKSTKSA" FT misc_feature 129031..129105 FT /note="Signal peptide predicted for BP1440 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.709) with cleavage site FT probability 0.611 between residues 25 and 26" FT misc_feature 129049..129117 FT /note="1 probable transmembrane helix predicted for BP1440 FT by TMHMM2.0 at aa 7-29" FT misc_feature 129055..129627 FT /note="HMMPfam hit to PF01145, SPFH domain / Band 7 family" FT CDS 130023..131180 FT /transl_table=11 FT /locus_tag="BP1441" FT /product="probable membrane protein" FT /note="Similar to Rhizobium meliloti hypothetical FT transmembrane protein Smc01464 TR:CAC46726 (EMBL:AL591789) FT (426 aa) fasta scores: E(): 4.8e-25, 33.42% id in 377 aa, FT and to Rhizobium loti Mll4270 protein TR:Q98EF3 FT (EMBL:AP003003) (403 aa) fasta scores: E(): 1.3e-19, 29.72% FT id in 397 aa" FT /db_xref="InterPro:IPR000160" FT /db_xref="UniProtKB/TrEMBL:Q7VYA9" FT /protein_id="CAE41731.1" FT /translation="MLAPVTLLVISTLSSLVTQGVLGSLLRSGIAGIRELMWANVLVLC FT SLLLFTLQANPAMPPWLAIQAPNVLISSGVVLFCAGVFRFMQQRPPWRLLLLGLALSIG FT ANIWFHYVDPSVNARVVTASGLHALLWGGSAWTIYRNMPLRRSRYSYWFAGVTATVAAL FT GHALRTAVYGLQIEQTQGLLQSSVWNVAFLAIGVLVMPSMTLGMIMMIHDRMLAERERE FT ANQDFLTGLLSRKAWWREGERLCARALRTGRPLTLLALDIDRFKQVNDQHGHAAGDVVL FT RHFGSLATALLRSGDVIGRLGGEEFVALLPDTDGDTGVSVAERLLASVRATPCSHGGKA FT LTYTFSGGVAQYRAGDTLPVLVERADAALYAAKQAGRDRIRNRAG" FT misc_feature 130023..130082 FT /note="Signal peptide predicted for BP1441 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.775) with cleavage site FT probability 0.352 between residues 20 and 21" FT misc_feature join(130032..130100,130134..130193,130203..130271, FT 130290..130358,130368..130436,130470..130538, FT 130581..130649) FT /note="7 probable transmembrane helices predicted for FT BP1441 by TMHMM2.0 at aa 4-26, 38-57, 61-83, 90-112, FT 116-138, 150-172 and 187-209" FT misc_feature 130668..131159 FT /note="HMMPfam hit to PF00990, GGDEF domain" FT CDS complement(131161..131628) FT /transl_table=11 FT /gene="smpB" FT /gene_synonym="smqB" FT /locus_tag="BP1442" FT /product="SsrA-binding protein" FT /note="Similar to Escherichia coli ssrA-binding protein FT SmpB or SmqB or B2620 or Z3913 or Ecs3482 SW:SSRP_ECOLI FT (P32052) (159 aa) fasta scores: E(): 2e-26, 45.94% id in FT 148 aa, and to Neisseria meningitidis SsrA-binding protein FT SmpB or Nma1726 or Nmb1526 SW:SSRP_NEIMA (Q51111) (148 aa) FT fasta scores: E(): 2.3e-35, 61.64% id in 146 aa" FT /db_xref="GOA:Q7VYA8" FT /db_xref="InterPro:IPR020081" FT /db_xref="UniProtKB/Swiss-Prot:Q7VYA8" FT /protein_id="CAE41732.1" FT /translation="MSIIDNRKATHDYFIEDRYEAGMVLEGWEVKAIRDGRVQLKESYV FT IVRDGEIYLLGMHVSPLPTASTHIRPDATRTRKLLLKAEEIRKLIGKVEQRGYTLVPLN FT LHYKNGRIKLDFALGRGKKLYDKRDTAREKDWQREKERVLKHDTRVNQRDS" FT misc_feature complement(131422..131628) FT /note="HMMPfam hit to PF01668, SmpB protein" FT misc_feature complement(131530..131568) FT /note="ScanRegExp hit to PS01317, SSRA-binding protein. FT Confirmed by InterPro eMOTIF pattern match." FT CDS 131694..132128 FT /transl_table=11 FT /locus_tag="BP1443" FT /product="conserved hypothetical protein" FT /note="Similar to Vibrio cholerae hypothetical protein FT Vc0849 SW:Y849_VIBCH (P52122) (144 aa) fasta scores: E(): FT 2.9e-24, 46.52% id in 144 aa, and to Escherichia coli FT hypothetical protein YfjG or B2619 SW:YFJG_ECOLI (P52121) FT (158 aa) fasta scores: E(): 1.1e-23, 42.25% id in 142 aa" FT /db_xref="InterPro:IPR005031" FT /db_xref="UniProtKB/TrEMBL:Q7VYA7" FT /protein_id="CAE41733.1" FT /translation="MHKVQRSVLVPYSAAQMFDLVADVEKYPEFMPWCGGAEVHSRSEH FT GMQASILISFAGLKQRFSTRNTHDYPQRIDLELVDGPFSMLVGHWVFQPLAEDACKVLF FT TLEYAFSNRALEMVVGPVFNRIAASFIDSFTKRAQAKYGE" FT CDS 132157..132468 FT /transl_table=11 FT /locus_tag="BP1444" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli protein YfjF or B2618 FT SW:YFJF_ECOLI (P52119) (96 aa) fasta scores: E(): 9.8e-07, FT 43.52% id in 85 aa, and to Neisseria meningitidis FT hypothetical protein nma1005 or nmb0796 SW:YA05_NEIMA FT (Q9JRC2) (92 aa) fasta scores: E(): 6.1e-07, 36.78% id in FT 87 aa" FT /db_xref="InterPro:IPR005346" FT /db_xref="UniProtKB/TrEMBL:Q7VYA6" FT /protein_id="CAE41734.1" FT /translation="MTVCHACPDGAWQRAVTLPAGATVADAVAASGFAAAHRGQDPWAH FT GVGVFGKAQAADAPLADGDRVEIYRGLSFDPKESRRRRAEHRRALAARGGKARPAGLL" FT CDS 132665..133819 FT /transl_table=11 FT /locus_tag="BP1445" FT /product="probable acyl-CoA dehydrogenase" FT /note="Similar to Pseudomonas aeruginosa probable acyl-CoA FT dehydrogenase Pa0746 TR:Q9I5I3 (EMBL:AE004509) (387 aa) FT fasta scores: E(): 2.8e-92, 62.36% id in 380 aa, and to FT Caulobacter crescentus acyl-CoA dehydrogenase Cc1350 FT TR:Q9A8K3 (EMBL:AE005810) (379 aa) fasta scores: E(): FT 5.4e-85, 56.99% id in 379 aa" FT /db_xref="GOA:Q7VYA5" FT /db_xref="HSSP:1BUC" FT /db_xref="InterPro:IPR006092" FT /db_xref="UniProtKB/TrEMBL:Q7VYA5" FT /protein_id="CAE41735.1" FT /translation="MDFELTDEQRAFAQAARDYAQGELAPHAARWDAEGIFPREAFARA FT GELGFCAIYASEEIGGLGLPRLDATLVFEEMAAVDPSTTAFLTIHNMATWMVGQWARPA FT VREQWGPLLASGEKLASYCLTEPNAGSDAGSLATRAERQGDDYVLNGAKAFISGGGDTD FT LLVVMARTGGDGPGGVSAFAVPADAAGIAYGRKEEKMGWNSQSTRPITFEQVRVPASHM FT LGEPGEGFKIAMKGLDGGRINIGTCSVGAAQGAMDAARRYMDERRQFNRKLAQFQALQF FT KLADMATHLVAARQMVRLAACKLDAGSADASTYCAMAKRFATDMGFQICLDAQQIHGGY FT GYLRDYPLERLVRDTRVHQILEGTNEIMRVIVARQLLEKGADIR" FT misc_feature 132677..133786 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT misc_feature 133031..133069 FT /note="ScanRegExp hit to PS00072, Acyl-CoA dehydrogenases FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 133667..133726 FT /note="ScanRegExp hit to PS00073, Acyl-CoA dehydrogenases FT signature 2. Confirmed by InterPro eMOTIF pattern match." FT CDS 133816..134988 FT /transl_table=11 FT /locus_tag="BP1446" FT /product="enoly-CoA hydratase" FT /note="Similar to Pseudomonas putida enoyl-coenzyme A FT hydratase TR:Q51969 (EMBL:U24215) (355 aa) fasta scores: FT E(): 1.9e-29, 38.66% id in 375 aa, and to Pseudomonas FT aeruginosa probable enoyl-CoA hydratase/isomerase Pa0744 FT TR:Q9I5I5 (EMBL:AE004509) (367 aa) fasta scores: E(): FT 1.5e-41, 46.47% id in 383 aa" FT /db_xref="GOA:Q7VYA4" FT /db_xref="InterPro:IPR001753" FT /db_xref="UniProtKB/TrEMBL:Q7VYA4" FT /protein_id="CAE41736.1" FT /translation="MNAPVLFEERIADNGVRLGVATLNAPQTLNGLSLEMVELLDARLR FT AWAADAAVAMVILQGAGEKAFCAGGDLHGLYRSMRENTGGDPWANTHARRFFEHEYRLD FT YLIHTYPKPVLCWGHGIVMGGGVGLMMGASHRVVSETTRMAMPEITIGLFPDVGGSWLL FT NRMPGRTGLFLALTGAHVNASDAFFAGLADFRLDSAQWPDFCASLLSLPWAGQPGGPGT FT GNAAPRSINDGLLRQALLAHEPATQLEPGPLRQHSFLVNSLCSGKRLDDIYAEIAELKD FT HADPWLARAAATMLAGSPGSARLAYALQQHTRLRSLADVFRIEYVAALACAAHGDFAEG FT IRALLVDKDRQPRWNPATLSEASDDWVRKFFDEPWPAGQPHPLADLGHGA" FT misc_feature 133870..134406 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT CDS 135036..135929 FT /transl_table=11 FT /gene="mmsB" FT /locus_tag="BP1447" FT /product="3-hydroxyisobutyrate dehydrogenase" FT /EC_number="1.1.1.31" FT /note="Similar to Pseudomonas aeruginosa FT 3-hydroxyisobutyrate dehydrogenase MmsB or Pa3569 FT SW:MMSB_PSEAE (P28811) (298 aa) fasta scores: E(): 4.2e-66, FT 67% id in 294 aa, and to Rhizobium loti FT 3-hydroxyisobutyrate dehydrogenase Mlr1203 TR:Q98L30 FT (EMBL:AP002996) (294 aa) fasta scores: E(): 3.1e-44, 50.69% FT id in 290 aa" FT /db_xref="GOA:Q7VYA3" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VYA3" FT /protein_id="CAE41737.1" FT /translation="MSSIAFIGLGNMGAPMALNLVKAGHDLTVFDLVPAAVKTLTDAGA FT RAAGSAAEAVQGAELVISMLPASKHVEGLYLGQDLLASIGASALVIECSTIAPDSARKV FT AAAAQARGIAMIDAPVSGGTGGAAAGTLTFIVGGEAPALERARPVLASMGKNIFHAGGA FT GAGQVAKICNNMLLGILMAGTSEALALGVANGLDPKVLSDIISKSSGRNWATELYNPWP FT GVMEHAPASKGYAGGFGVDLMLKDLGLAAEAALGTRSSIPLGELARNLYSLHSQGGSGG FT LDFSSIVNLYSPGERN" FT misc_feature 135051..135092 FT /note="ScanRegExp hit to PS00895, 3-hydroxyisobutyrate FT dehydrogenase signature. Confirmed by InterPro eMOTIF FT pattern match." FT CDS 135975..136412 FT /transl_table=11 FT /locus_tag="BP1448" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti Mlr6946 protein TR:Q987R7 FT (EMBL:AP003010) (171 aa) fasta scores: E(): 5.5e-18, 48.85% FT id in 131 aa, and to Agrobacterium tumefaciens Agr_c_483p FT TR:AAK86098 (EMBL:AE007967) (149 aa) fasta scores: E(): FT 7.3e-14, 39.09% id in 133 aa" FT /db_xref="InterPro:IPR006683" FT /db_xref="UniProtKB/TrEMBL:Q7VYA2" FT /protein_id="CAE41738.1" FT /translation="MPDTEAFEAARQRVHDNFARQSVMALIGARLGAVEPGEVEIALPY FT RADLCQQNGFLHAGISTTIADSAGGYAAYTLFGPGEDVLTSEFKMNFLAPADGEHFVAS FT GKVLKPGRRLSICQVELRACRGERSTLCLVGLMTAVRVTPR" FT misc_feature 136023..136400 FT /note="HMMPfam hit to PF02584, Uncharacterized protein FT PaaI, COG2050" FT CDS 136472..137161 FT /transl_table=11 FT /locus_tag="BP1449" FT /product="putative membrane protein" FT /note="Similar to Caulobacter crescentus nodulin-related FT protein Cc0717 TR:Q9AA89 (EMBL:AE005747) (233 aa) fasta FT scores: E(): 8.4e-38, 60.71% id in 224 aa, and to Rhizobium FT loti Mlr6622 protein TR:Q988S0 (EMBL:AP003009) (231 aa) FT fasta scores: E(): 3.8e-37, 60.26% id in 224 aa" FT /db_xref="InterPro:IPR008217" FT /db_xref="UniProtKB/TrEMBL:Q7VYA1" FT /protein_id="CAE41739.1" FT /translation="MPARSHHRIFRSGWLRAAVLGANDGIVSTASLIAGVAAAQASYAA FT ILTSGLAGLVAGALSMAAGEYVSVKSQADIEAADLRLEQSSLKRNSREELEELTGIYVE FT RGLSPDLAGQVARQLTRHNALDAHARDELGISVHNRAQPVQAALASAASFAVGAALPLA FT IAMAAPLAQLMPVVIAGSVAGLGILGAVAARAGGAPVGPAAVRVVLLGAAAMALTAGVG FT ALFGVAV" FT misc_feature 136472..136603 FT /note="Signal peptide predicted for BP1449 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.925) with cleavage site FT probability 0.619 between residues 44 and 45" FT misc_feature join(136508..136576,136604..136672,136907..136975, FT 136988..137047,137084..137152) FT /note="5 probable transmembrane helices predicted for FT BP1449 by TMHMM2.0 at aa 13-35, 45-67, 146-168, 173-192 and FT 205-227" FT CDS complement(137171..138121) FT /transl_table=11 FT /locus_tag="BP1450" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7VYA0" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7VYA0" FT /protein_id="CAE41740.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS" FT repeat_region 137171..137198 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(137171..138223) FT misc_feature complement(137207..137740) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(137798..137863) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(138192..138223) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(138220..139182) FT /transl_table=11 FT /gene="talB" FT /locus_tag="BP1451" FT /product="transaldolase B" FT /EC_number="2.2.1.2" FT /note="Similar to Escherichia coli transaldolase B TalB or FT B0008 or Z0008 or Ecs0008 SW:TALB_ECOLI (P30148) (316 aa) FT fasta scores: E(): 5.8e-56, 53.94% id in 317 aa, and to FT Drosophila melanogaster probable transaldolase Tal or FT Cg2827 SW:TAL1_DROME (Q9W1G0) (320 aa) fasta scores: E(): FT 2.4e-60, 55.72% id in 323 aa" FT /db_xref="GOA:Q7VY99" FT /db_xref="InterPro:IPR018225" FT /db_xref="UniProtKB/Swiss-Prot:Q7VY99" FT /protein_id="CAE41741.1" FT /translation="MPSQLEALRRHTVVVADTGDFEAMRALRPTDATTNPSLILKAVQQ FT EAYRPLLVQTARAHQGASPAEITDRLLVAFGRQILDIVPGRVSTEVDARLSFDTRATVE FT RARGLIALYQAAGVPRERVLIKIASTWEGIQAARVLQAEGIRCNLTLLFCLPQAAACAD FT AGVQLISPFVGRIYDWHKKNAGAEWVEDARRGANDPGVQSVSRIYRYYKRFGIETEIMG FT ASFRNVDQILALAGCDLLTISPELLTRLAQTEGEVPAALSPQAGHDDADAVRLDGGEVA FT FRTQLNEDAMASEKLSEGIRLFVADARKLDALIESHGAA" FT misc_feature complement(138448..139155) FT /note="HMMPfam hit to PF00923, Transaldolase" FT misc_feature complement(138763..138816) FT /note="ScanRegExp hit to PS00958, Transaldolase active FT site. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(139066..139092) FT /note="ScanRegExp hit to PS01054, Transaldolase signature FT 1. Confirmed by InterPro eMOTIF pattern match." FT CDS 139466..140563 FT /transl_table=11 FT /gene="carA" FT /gene_synonym="pyrA" FT /locus_tag="BP1452" FT /product="carbamoyl-phosphate synthase small chain" FT /EC_number="6.3.5.5" FT /note="Similar to Escherichia coli carbamoyl-phosphate FT synthase small chain CarA or PyrA or B0032 or Z0037 or FT Ecs0035 SW:CARA_ECOLI (P00907) (382 aa) fasta scores: E(): FT 6.1e-94, 65.02% id in 366 aa, and to Pseudomonas aeruginosa FT carbamoyl-phosphate synthase small chain CarA or Pa4758 FT SW:CARA_PSEAE (P38098) (378 aa) fasta scores: E(): FT 7.1e-100, 68.64% id in 370 aa" FT /db_xref="GOA:Q7VY98" FT /db_xref="HSSP:1CE8" FT /db_xref="InterPro:IPR011702" FT /db_xref="UniProtKB/TrEMBL:Q7VY98" FT /protein_id="CAE41742.1" FT /translation="MADGTIFRGVSIGVPGHTVAEVVFNTSMTGYQEILTDPSYAGQTV FT MLTYPHIGNTGVNPEDVEANRVYAAGLVVRDCPARVSNFRATQSLPEYLNAQGIVAIAG FT IDTRKLTRILRESGAQGSCILVGEDAERAVELARGFPGMSGQDLAKVVSIKERADWTQG FT TWELGSGYTQPAQDRFHVVAYDYGVKSNILRLLADRGCRVTLVPAQTTAEEAFKLQPDG FT VFLSNGPGDPEPCDYAVDATRAFLERKLPVFGICLGHQLMGLALGGKTVKMKTGHHGAN FT HPVQDVQSGRVFITSQNHGFAVDAATLPANTRVTHISLFDGTLQGFELTDRPAFCFQGH FT PEASPGPHDIIVLFDKFISLMAGQK" FT misc_feature 139469..139927 FT /note="HMMPfam hit to PF00988, Carbamoyl-phosphate synthase FT small chain, CPSase domain" FT misc_feature 140009..140545 FT /note="HMMPfam hit to PF00117, Glutamine amidotransferase FT class-I" FT misc_feature 140216..140251 FT /note="ScanRegExp hit to PS00442, Glutamine FT amidotransferases class-I active site. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature 140252..140275 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 140574..143816 FT /transl_table=11 FT /gene="carB" FT /gene_synonym="pyrA" FT /locus_tag="BP1453" FT /product="carbamoyl-phosphate synthase large chain" FT /EC_number="6.3.5.5" FT /note="Similar to Escherichia coli carbamoyl-phosphate FT synthase large chain CarB or PyrA or B0033 SW:CARB_ECOLI FT (P00968) (1072 aa) fasta scores: E(): 0, 68.42% id in 1080 FT aa, and to Neisseria meningitidis carbamoyl phosphate FT synthase large subunit CarB or Nma0602 TR:Q9JW02 FT (EMBL:AL162753) (1071 aa) fasta scores: E(): 0, 72.42% id FT in 1077 aa" FT /db_xref="GOA:Q7VY97" FT /db_xref="HSSP:1A9X" FT /db_xref="InterPro:IPR013817" FT /db_xref="UniProtKB/TrEMBL:Q7VY97" FT /protein_id="CAE41743.1" FT /translation="MPKRTDLKSILIIGAGPIIIGQACEFDYSGAQACKALKAEGYRTI FT LVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLPTMGGQTALNCALDLAH FT HGVLKKHNVELIGANEHAIEKAEDRQKFKQAMTDIGLESAKSGVAHSMDEAWEVQRRIA FT ADIGTAGFPVVIRPSFTLGGSGGGIAYNAEEFEVICRRGLEASPTKELLIEESLLGWKE FT FEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNASIAVLRE FT IGVDTGGSNVQFAVNPQNGRMIVIEMNPRVSRSSALASKATGFPIAKVAARLAVGYTLD FT ELRNEITGGATPASFEPTIDYVVTKVPRFAFEKFPQADARLTTQMKSVGEVMAMGRTFQ FT ESFQKALRGLEVGVDGLNQKTTDREKLQIELGEPGPERIWYVGDAFAQGFTLDEVHGLT FT RIDPWFLAQIKEIVDIELALEQKTLADLDYATLWELKRRGFSDRRLAFLLDSSESEVRK FT LRHQLNVRPVYKRVDTCAAEFATNTAYMYSTYEEECESQPTDRKKIIVLGGGPNRIGQG FT IEFDYCCVHAALALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVHKEN FT PVGMIVQYGGQTPLKLARALEANGVSIIGTSPESIDVAEDRERFQKLLNKLGLRQPPNR FT TARTEAEALAHASEIGYPLVVRPSYVLGGRAMEIVHEQQDLERYMREAVKVSNDSPVLL FT DRFLNDATEVDVDCLADGQTVFIGGVMEHIEQAGVHSGDSACSLPPYSLSAEVIAEIKR FT QTTMMAKALNVSGLMNVQFAIQGGDVYVLEVNPRASRTVPYVSKATGLQLAKIAARAMA FT GRTLADQGITREVVPPYFSVKEAVFPFVKFPGVDTILGPEMKSTGEVMGVGNSFGEAFV FT KSQLAAGVRLPDSGTVFISVRNQDKPRAVEVARGLHNLGFKLVATRGTAAEIEAAGIPV FT QVVNKVTEGRPHIVDMVKNGEVSLVINTVEERRNAIADSRTIRTQALANRITFFTTIAG FT ARAAVEGMQFMRQGLGLQVYPLQELHAGLTAQ" FT misc_feature 140598..141815 FT /note="HMMPfam hit to PF00289, Carbamoyl-phosphate synthase FT L chain, N-terminal domain" FT misc_feature 140613..140645 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 141084..141128 FT /note="ScanRegExp hit to PS00866, Carbamoyl-phosphate FT synthase subdomain signature 1. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 141483..141506 FT /note="ScanRegExp hit to PS00867, Carbamoyl-phosphate FT synthase subdomain signature 2." FT misc_feature 142257..143390 FT /note="HMMPfam hit to PF00289, Carbamoyl-phosphate synthase FT L chain, N-terminal domain" FT misc_feature 142704..142748 FT /note="ScanRegExp hit to PS00866, Carbamoyl-phosphate FT synthase subdomain signature 1. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 143091..143114 FT /note="ScanRegExp hit to PS00867, Carbamoyl-phosphate FT synthase subdomain signature 2." FT misc_feature 143409..143705 FT /note="HMMPfam hit to PF02142, MGS-like domain" FT CDS join(143966..144595,144594..144719) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1454" FT /product="probable short chain dehydrogenase (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 210. The frameshift occurs within FT a polymeric tract of (CG)3. The sequence has been checked FT and believed to be correct. Similar to Myxococcus xanthus FT hypothetical oxidoreductase in uraA 5'region SW:YURA_MYXXA FT (P25970) (258 aa) fasta scores: E(): 5e-20, 39.22% id in FT 232 aa, and to Mycobacterium tuberculosis putative FT oxidoreductase rv0945 rv0945 or mt0971 or mtcy10d7.29C FT SW:Y945_MYCTU (P71564) (253 aa) fasta scores: E(): 2.8e-18, FT 37.6% id in 250 aa" FT /db_xref="PSEUDO:CAE41744.1" FT misc_feature 143969..144511 FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT misc_feature 144362..144448 FT /note="ScanRegExp hit to PS00061, Short-chain FT dehydrogenases/reductases family signature." FT variation 144589..144594 FT /note="(CG)3 in pertussis; (CG)4 in parapertussis and FT bronchiseptica" FT CDS complement(144838..145482) FT /transl_table=11 FT /gene="gpmB" FT /locus_tag="BP1455" FT /product="probable phosphoglycerate mutase 2" FT /EC_number="5.4.2.1" FT /note="Similar to Escherichia coli probable FT phosphoglycerate mutase 2 GpmB or B4395 SW:PMG2_ECOLI FT (P36942) (215 aa) fasta scores: E(): 6e-15, 31.16% id in FT 215 aa, and to Arabidopsis thaliana putative FT phosphoglyerate mutase TR:AAK59606 (EMBL:AY035101) (230 aa) FT fasta scores: E(): 2.2e-21, 38.57% id in 210 aa" FT /db_xref="GOA:Q7VY96" FT /db_xref="HSSP:1EBB" FT /db_xref="InterPro:IPR013078" FT /db_xref="UniProtKB/TrEMBL:Q7VY96" FT /protein_id="CAE41745.1" FT /translation="MTEIWFIRHGETDWNRQRRLQGWQDIPLNESGREQARLLAERLRD FT TASEHPFAALYSSDLKRAHDTAASLSAALQLRVRTEPGIRERGFGVLEGLEMENLEQQA FT PQAAQAWRSRDPLRALEGGETLGQFQARIIATVDDLAARHAGERILAVTHGGALDIIWR FT HASGVPLDAPRYAALLNVSINRVAIAQRKWEVLGWGDVEHIGAETGNDVTP" FT misc_feature complement(144967..145470) FT /note="HMMPfam hit to PF00300, Phosphoglycerate mutase FT family" FT CDS complement(145493..146392) FT /transl_table=11 FT /locus_tag="BP1456" FT /product="LysR-family transcriptional regulator" FT /note="Similar to the previously sequenced Bordetella FT pertussis Brg1 TR:O30441 (EMBL:AF006000) (291 aa) fasta FT scores: E(): 9.6e-14, 30.46% id in 302 aa, and to Neisseria FT meningitidis putative LysR-family transcriptional regulator FT Nma1437 or Nmb1049 TR:Q9JRJ3 (EMBL:AL162755) (304 aa) fasta FT scores: E(): 5e-19, 31.52% id in 295 aa" FT /db_xref="GOA:Q7VY95" FT /db_xref="HSSP:1IXC" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VY95" FT /protein_id="CAE41746.1" FT /translation="MEIYQIRAFVTVARLGNLTKAAEALSLTQPAVTAQLKALEQSLGV FT ALFDRAAGRLSLAKAGEALLPTAEALLVLGAQLKSEARQLQGQLQGVIDLGVPSEQPDF FT LRLGELAAALRQHLPLVELKTHVLPSTALLEQVGTARLAGALTIVAHPPRGVTWHALRS FT VRYRIALPASLADTLKRAGWRDIAQLPWLDGPSGSHLHLLLRDMFERHGLAPRVVMQND FT DQSNLDALVRAGAGCALLREETALAGAAAGDFIVWGQARADATLGFIAPPEQAGEPMLV FT ALISIIQKIWKPGAAVAT" FT misc_feature complement(145955..146386) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(146252..146344) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT misc_feature complement(146282..146347) FT /note="Predicted helix-turn-helix motif with score 1603 FT (+4.65 SD) at aa 16-37, sequence GNLTKAAEALSLTQPAVTAQLK" FT CDS complement(146440..147525) FT /transl_table=11 FT /locus_tag="BP1457" FT /product="probable ATP-binding component of ABC FT transporter" FT /note="Similar to Escherichia coli putrescine transport FT ATP-binding protein PotG or B0855 SW:POTG_ECOLI (P31134) FT (377 aa) fasta scores: E(): 4.2e-46, 44.1% id in 331 aa, FT and to Rhizobium meliloti putative ATP-binding ABC FT transporter protein smc01608 TR:CAC46799 (EMBL:AL591790) FT (353 aa) fasta scores: E(): 1.2e-48, 45.74% id in 341 aa" FT /db_xref="GOA:Q7VY94" FT /db_xref="HSSP:1Q1B" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VY94" FT /protein_id="CAE41747.1" FT /translation="MKKVSVECRNIRLSYGRNEVLKDISIHIEPGEFFALLGPSGSGKS FT TLLRLIAGFNRQSHGQLLVDGRDIGATPPWDRNIGMVFQNYALWPHMTVWDNVAFGLVE FT RRLPRAEIRDKVAAALELVGLADFGRRRPNQLSGGQQQRVALARTIVIEPQVLLLDEPL FT SNLDKKLRVQMRQDLLSLQRRLGITTIFVTHDQEEAMTTADRMAVLDHGVVQQIGAPST FT LFDYPVNRFVANFVGTMNVLEGEVRERSRGGVVLAVDGVGELHLPVNGDAPQAGRLAAS FT FRPHTVLIEMADGTGDARYVWLPGVVESSEFLGEFTRYQVQVGEQRLTADQHHLAGLSP FT FPVGAPVAVGLEPTQIRLLAA" FT misc_feature complement(146890..147435) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(147076..147120) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(147391..147414) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(147522..149216) FT /transl_table=11 FT /locus_tag="BP1458" FT /product="probable permease component of ABC transporter" FT /note="Similar to Actinobacillus pleuropneumoniae ferric FT transport system permease protein AfuB SW:AFUB_ACTPL FT (Q44123) (687 aa) fasta scores: E(): 4.3e-38, 28% id in 550 FT aa, and to Agrobacterium tumefaciens Agr_l_586p agr_l_586 FT TR:AAK88866 (EMBL:AE008229) (561 aa) fasta scores: E(): FT 2.3e-50, 34.22% id in 564 aa" FT /db_xref="GOA:Q7VY93" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7VY93" FT /protein_id="CAE41748.1" FT /translation="MTSTGTFRLPAGPALAALLALFLVFPVGTVFYTAFVNADGSFTLG FT HFGAFFNQPLMKEAFFNSLYVAGWSSLLASLIAVPLAYFTVRFEFRGALLIQTLGVLPL FT IMPPFVGAVAMQLIFGRSGSVNLLLDDWLGITLPFMDGLNGVIFVESLHYFPFILMNLV FT VALRNIDGSMEEAAFNLGSRGFRLFCRIIFPLALPGYLAGTSLVFVKVFDDLGTPLVLG FT TTNMLAPQAYLRITQVGLEDPLGYVISVIMIGFSILALWLSARVLKGKDYSTLQKGGNA FT IHKRRLRPVESMLAYAWIGAVLLLVLSPHLGVLLLSLASVWSYAPLPDGYTLAHYTAVF FT TESQGMIANTLLYCGLAAGVDVVLGTAIAYLMLRTRLPARQWLDFIASAALAIPGIVLA FT IGYLRTFRGVEIPGTGVLLTSSWVLIMIAYSVRRLPYALRSCVAALQQINVSLEEAAES FT LGASRLRTIRRIVVPLMAGGMLAGFVTSFITAAVELSATIMLVTRDSQAPMSYGIYLYM FT QSAAGRGPGAALGVLAVVAVGIGTYVSHLLVERASARQRPARSGESS" FT misc_feature complement(join(147573..147638,147741..147806, FT 147924..147989,148005..148061,148098..148163, FT 148269..148334,148416..148481,148590..148655, FT 148719..148784,148857..148922,148959..149024, FT 149112..149177)) FT /note="12 probable transmembrane helices predicted for FT BP1458 by TMHMM2.0 at aa 13-35, 64-86, 98-120, 144-166, FT 187-209, 245-267, 294-316, 351-373, 385-404, 409-431, FT 470-492 and 526-548" FT misc_feature complement(147663..147887) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature complement(147798..147884) FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature complement(148506..148724) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature complement(148635..148721) FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature complement(149103..149216) FT /note="Signal peptide predicted for BP1458 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.996) with cleavage site FT probability 0.925 between residues 38 and 39" FT repeat_region 149293..149324 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 149293..150345 FT CDS 149395..150345 FT /transl_table=11 FT /locus_tag="BP1459" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTC0" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTC0" FT /protein_id="CAE41749.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN" FT misc_feature 149653..149718 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 149776..150309 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(150314..150345) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS join(150481..150786,150790..151857) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1460" FT /product="putative membrane protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to be lacking the FT N-terminal region, this is possibly due to the insertion of FT IS481 upstream. This CDS also contains an in-frame TAA stop FT codon. The sequence has been checked and believed to be FT correct. Similar to Caulobacter crescentus sensory FT box/ggdef family protein Cc3094 TR:Q9A3V7 (EMBL:AE005972) FT (748 aa) fasta scores: E(): 5.4e-48, 37.61% id in 428 aa, FT and to Agrobacterium tumefaciens Agr_l_2664p TR:AAK89899 FT (EMBL:AE008333) (644 aa) fasta scores: E(): 3.9e-47, 35.93% FT id in 423 aa" FT /db_xref="PSEUDO:CAE41750.1" FT misc_feature 150508..150573 FT /note="1 probable transmembrane helix predicted for BP1460 FT by TMHMM2.0 at aa 10-31" FT variation 150787..150789 FT /note="in-frame TAA stop codon in pertussis; CAA in FT parapertussis and bronchiseptica" FT misc_feature 151090..151827 FT /note="HMMPfam hit to PF00563, Domain of unknown function FT 2" FT CDS 151899..152960 FT /transl_table=11 FT /gene="aroC" FT /locus_tag="BP1462" FT /product="chorismate synthase" FT /EC_number="4.2.3.5" FT /note="Similar to Escherichia coli chorismate synthase AroC FT or B2329 SW:AROC_ECOLI (P12008) (360 aa) fasta scores: E(): FT 8e-87, 64.18% id in 349 aa, and to Pseudomonas aeruginosa FT chorismate synthase AroC or Pa1681 SW:AROC_PSEAE (Q9I344) FT (363 aa) fasta scores: E(): 2.3e-96, 72.57% id in 350 aa" FT /db_xref="GOA:Q7VY92" FT /db_xref="HSSP:1Q1L" FT /db_xref="InterPro:IPR000453" FT /db_xref="UniProtKB/Swiss-Prot:Q7VY92" FT /protein_id="CAE41751.1" FT /translation="MSGNTLGTLFCVTNFGESHGPAIGCVVDGCPPGLPLEAADIQAEL FT DRRRPGTSRHVTQRQEADQVEILSGVYEGVTTGTPIGLLIRNTDARSKDYSNIADTFRP FT GHADFAYWRKYGVRDPRGGGRSSARLTAPTVAAGAIAKKWLASQFGVRVRGYMSQLGPI FT AIPFSSWDDVPGNAFYAPNAAVVPELEAYMDQLRRDGDSVGARIEVVAEGLPAGWGEPI FT YDRLDADIAHAMMGLNAVKGVSLGAGFESIAQRGSEHGDEITPEGFASNHAGGVLGGIS FT TGQPITVSLAIKPTSSIRVERRSVNRAGEPVMVQTLGRHDPCVGIRATPIAEALLALVL FT IDHALRQRAQCGG" FT misc_feature 151926..152942 FT /note="HMMPfam hit to PF01264, Chorismate synthase" FT misc_feature 151944..151991 FT /note="ScanRegExp hit to PS00787, Chorismate synthase FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 152268..152318 FT /note="ScanRegExp hit to PS00788, Chorismate synthase FT signature 2." FT misc_feature 152853..152903 FT /note="ScanRegExp hit to PS00789, Chorismate synthase FT signature 3. Confirmed by InterPro eMOTIF pattern match." FT CDS 152994..153830 FT /transl_table=11 FT /locus_tag="BP1463" FT /product="putative lipoprotein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4632 TR:Q9HVF9 (EMBL:AE004877) (273 aa) fasta FT scores: E(): 6.6e-50, 53% id in 266 aa, and to Vibrio FT cholerae hypothetical protein Vca0581 TR:Q9KM08 FT (EMBL:AE004389) (263 aa) fasta scores: E(): 5.6e-24, 36.53% FT id in 271 aa" FT /db_xref="GOA:Q7VY91" FT /db_xref="InterPro:IPR006025" FT /db_xref="UniProtKB/TrEMBL:Q7VY91" FT /protein_id="CAE41752.1" FT /translation="MKPVIQTFLRAAAVAGLALLAGCAGVSTTQSGAIGVDRTQYMSSL FT VPEQALVQEAGQQYAEIVQEARAKGLLDRDPAQLSRVRAISQRLIAQTGVFRADAANWP FT WEVHVLSVDEVNAWCMPGGKIAVYTGLLAHIKPTDDELAAVLGHEIAHALREHARERVS FT QQMATSIGLSVLSMATGSPGASDLGGKLTEVMFTLPNSRTHETEADRMGVELAARAGFD FT PRAAVTLWQKMGAADGNAPPEFLSTHPSASTRIGELQQALQKVLPLYEQARGQAAK" FT misc_feature 152994..153080 FT /note="Signal peptide predicted for BP1463 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.591 between residues 29 and 30" FT misc_feature 153030..153062 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 153426..153455 FT /note="ScanRegExp hit to PS00142, Neutral zinc FT metallopeptidases, zinc-binding region signature." FT CDS complement(153840..154382) FT /transl_table=11 FT /gene="mobB" FT /locus_tag="BP1464" FT /product="molybdopterin-guanine dinucleotide biosynthesis FT protein B" FT /note="Similar to Escherichia coli molybdopterin-guanine FT dinucleotide biosynthesis protein B MobB or B3856 FT SW:MOBB_ECOLI (P32125) (174 aa) fasta scores: E(): 1.4e-19, FT 42.51% id in 167 aa, and to Rhizobium loti FT molybdopterin-guanine dinucleotide biosynthesis protein B FT Mlr0548 TR:Q98MK1 (EMBL:AP002995) (167 aa) fasta scores: FT E(): 4.9e-29, 54.08% id in 159 aa" FT /db_xref="GOA:Q7VY90" FT /db_xref="HSSP:1P9N" FT /db_xref="InterPro:IPR004435" FT /db_xref="UniProtKB/TrEMBL:Q7VY90" FT /protein_id="CAE41753.1" FT /translation="MTRIIGFAGWSGAGKTQLLSRLIPCLKARGHSVSTLKHAHHTFDI FT DTPGKDSFRHREAGATEVLIASSARWALMHELRDEPEPELGELLARMCPVDFILVEGFK FT RNAHIKIEVHRHANGKPWLFPDDPSIGAIACDAAPPHGTLPRVALDDYDAVADLVERLA FT WPLDTTIARLAAPVSPA" FT misc_feature complement(154335..154358) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(154396..155688) FT /transl_table=11 FT /gene="moeA" FT /gene_synonym="chlE" FT /gene_synonym="bisB" FT /gene_synonym="narE" FT /locus_tag="BP1465" FT /product="molybdopterin biosynthesis protein" FT /note="Similar to Escherichia coli molybdopterin FT biosynthesis protein MoeA or ChlE or BisB or NarE or B0827 FT SW:MOEA_ECOLI (P12281) (411 aa) fasta scores: E(): 1.5e-63, FT 47.5% id in 400 aa, and to Vibrio cholerae molybdopterin FT biosynthesis MoeA protein Vc1527 TR:Q9KRV7 (EMBL:AE004231) FT (606 aa) fasta scores: E(): 6.6e-59, 43.72% id in 430 aa" FT /db_xref="GOA:Q7VY89" FT /db_xref="HSSP:1G8L" FT /db_xref="InterPro:IPR005111" FT /db_xref="UniProtKB/TrEMBL:Q7VY89" FT /protein_id="CAE41754.1" FT /translation="MNHAPTPSLEEIASCVNGYDPDALPISQAREFIDRLVPRLNAVEW FT LPLRSALGRVLAHDIVSTLNVPAHDNSAMDGYAFAGAELAGGADTPLRVVGSGLAGDNY FT QGTVGPGQCVRIMTGAVMPDGLDTVIPQEFVRQDGDRIVVPAGAVRPGDNRRLAGEDLA FT LGENALTAGRVLRPADIGLLASLAQAEVPVVRRLRVAFFSTGDELRSIGEPLDPGCVYD FT SNRYTIWSMLQRLGVEVLDLGVVRDDPHALETAFSAAADNADVVITSGGVSVGEADYTK FT KVMAKLGDVLFWKIAMRPGRPLAIGRIHSNGRDAILFGLPGNPVAVMVTFYALVRDALL FT TMSGATAQPMPWLRCVAAQPIRKKPGRTEYQRAIVTPAPGGGWQAAITGSQGSGILRSM FT SQANGLLVLHHDQGNIAAGEPVDVLPFDGVI" FT misc_feature complement(154411..155622) FT /note="HMMPfam hit to PF00994, Molybdenum cofactor FT biosynthesis protein" FT CDS complement(155685..156278) FT /transl_table=11 FT /gene="mobA" FT /gene_synonym="mob" FT /gene_synonym="chlB" FT /gene_synonym="narB" FT /locus_tag="BP1466" FT /product="molybdopterin-guanine dinucleotide biosynthesis FT protein A" FT /note="Similar to Escherichia coli molybdopterin-guanine FT dinucleotide biosynthesis protein A MobA or Mob or ChlB or FT NarB or B3857 SW:MOBA_ECOLI (P32173) (194 aa) fasta scores: FT E(): 6.2e-18, 36.64% id in 191 aa, and to Pasteurella FT multocida probable molybdopterin-guanine dinucleotide FT biosynthesis protein a MobA or Pm1799 SW:MOBA_PASMU FT (P57971) (189 aa) fasta scores: E(): 8.5e-24, 41.17% id in FT 187 aa" FT /db_xref="GOA:Q7VY88" FT /db_xref="HSSP:1E5K" FT /db_xref="InterPro:IPR013482" FT /db_xref="UniProtKB/Swiss-Prot:Q7VY88" FT /protein_id="CAE41755.1" FT /translation="MIDKNDITGLILAGGRASRMGSVDKGLQNFHGMPLAMHTLLRLGP FT QVGDIMINANRNLAAYEAMGAPVWPDALPDFPGPLAGFAAGLERCETPYMVTAPCDTPN FT FPADMVSRLADALIAEGAQIAMAATTADGALRTQPVFCLMRIDLLDSLLEFLHSGQRKT FT EIWANQHRCAIVRFDDAQAFAGANTLAELRQLQS" FT CDS 156431..157528 FT /transl_table=11 FT /locus_tag="BP1467" FT /product="putative iron sulfur binding protein" FT /note="Similar to Escherichia coli Mrp protein Mrp or B2113 FT SW:MRP_ECOLI (P21590) (369 aa) fasta scores: E(): 1e-54, FT 50% id in 334 aa, and to Pseudomonas aeruginosa FT hypothetical protein Pa3481 TR:Q9HYC8 (EMBL:AE004769) (364 FT aa) fasta scores: E(): 3.9e-65, 53.61% id in 360 aa.Also FT similar to BP0182, 60.000% identity (60.167% ungapped) in FT 360 aa overlap." FT /db_xref="GOA:Q7VY87" FT /db_xref="InterPro:IPR019591" FT /db_xref="UniProtKB/TrEMBL:Q7VY87" FT /protein_id="CAE41756.1" FT /translation="MVASESILQALQTVIDPNTGKDLVTTRAIRNLEVNGADVTFDAQL FT GYPAKSQIPALRRALIAAARGVAGVDNVSVNMQSVIETHAVPRGIALLPNVKNVIAVAS FT GKGGVGKSTTAVNLALALAAEGARVGLLDADIYGPSQAQMMGIEGRPQSEDGKTMEPLE FT NYGVQVMSIGFLVDADEAMIWRGPMAVQALEQLLRQTNWKNLDYLVIDMPPGTGDIHLT FT LSQKVPVTGAVIVTTPQDIALLDARKGVKMFEKVGVPIVGVVENMAVHVCSQCGHAEHI FT FGQGGGQRMAQDYGLAYLGALPLDINIRQQADGGRPSVVADPDGEVAGLYKDVARQVAV FT AVAAMGKDYSSKFSSISISRAPAGG" FT misc_feature 156722..156817 FT /note="HMMPfam hit to PF00142, 4Fe-4S iron sulfur cluster FT binding proteins, NifH/frxC family" FT misc_feature 156743..156766 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 156935..157243 FT /note="HMMPfam hit to PF00991, ParA family ATPase" FT misc_feature 157034..157084 FT /note="ScanRegExp hit to PS01215, Mrp family signature. FT Confirmed by InterPro eMOTIF pattern match." FT CDS 157535..158095 FT /transl_table=11 FT /locus_tag="BP1468" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q7VY86" FT /protein_id="CAE41757.1" FT /translation="MSDTLPLSMEVAVVMRKERIVGEMSRWQDSRWVLEDVVPDEPGFG FT RAPRMLYHDENQQRWLHPGLTVRLFKDDAEGYLLNVSAPAPCWFVLWRMEEEPGVASEP FT LARPEIVTLSYHDAGRWLDAQETVEQIPAPAYIVQWLHAFVQAHYVPEPKRRRRPVSFQ FT PLQDRFGNPASVSTTKKRGGGEP" FT CDS 158092..158772 FT /transl_table=11 FT /locus_tag="BP1469" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q7VY85" FT /protein_id="CAE41758.1" FT /translation="MSQDPAGFIGRWSRRKSEARQQAETAADPAAGVAQASLADTPFAG FT APAVADRPEETPERADAAPVQAPGPAADAETDLPLPTLDDVRALTLDSDFSRFVAGGVS FT PDVKNAALKKLFTDPHYNVMDGLDVYIDDYTQLEGLPQETVRRMASAKVFKLFEEDEPA FT SAQGEPADGACGPGQQAPGAMAEPDAAPAVPASAPDAIQSALPRDDAAGPADGPLPDAE FT PRRD" FT CDS 158796..160886 FT /transl_table=11 FT /locus_tag="BP1470" FT /product="putative iron-sulfur binding protein" FT /note="Similar to Vibrio cholerae iron-sulfur FT cluster-binding protein Vc1516 TR:Q9KRW8 (EMBL:AE004230) FT (553 aa) fasta scores: E(): 7.7e-19, 35.92% id in 451 aa" FT /db_xref="GOA:Q7VY84" FT /db_xref="InterPro:IPR017900" FT /db_xref="UniProtKB/TrEMBL:Q7VY84" FT /protein_id="CAE41759.1" FT /translation="MTTLICDCNRTMPLQPEALGQALGETLTLHSTLCRREAGAFQAAI FT RDGQDVVVACTQEKRLFGELGGATQGAVSPVRFVNIRETGGWSRDAAQAMPKLAALLAA FT AHLPEPDPVATVTYKSGGRLLIIGSLDQAEQAAALLDDVLDVTLFGQGPGRAGGAQERR FT YPVLSGRIDSLQGWLGAFELRWTRGNPIDLDLCTRCNACISACPDGAIGLDYQVDTARC FT TSHRACEQACTVAGAIDFSRSPENFTDQYDLVLDLGGTPLFTQHAPPQGYFAWGGQAPA FT TLLRLRELVGEFEKPKFFDYRQQLCAHSRNETVGCRACIDICSARAISSDSHHQRIVVN FT PSLCVGCGACTTVCPSGALTYTYPRATDQGSKLRTLLATYAKAGGQDAMLLLHSQQEGA FT RLVEQLGRQAALKQADGVPANVIPMALWHTASVGLDLWLSAVAFGARHIAVLTTAEEAP FT QYLEGLQAQFAQAQAILNGLGYAGIHLSLVPADTPQALDAALRQLAPAQGPAVAARHAV FT VQEKRSTLDLALDHLVAHAPAPAPESIALPAGAPGAGAPFGTVAVDSDACTLCMSCVSA FT CPSNALLDNPQSPQLRMVEKNCVQCGLCATTCPENAITLVPRLLLAPRRREAVVLNESA FT PFHCVRCNKAFGTQKGVEAMLGRLGGHAMFQGAALERLKMCGDCRVIDLYSAENETRIT FT DL" FT misc_feature 159360..159431 FT /note="HMMPfam hit to PF00037, 4Fe-4S binding domain" FT misc_feature 159381..159416 FT /note="ScanRegExp hit to PS00198, 4Fe-4S ferredoxins, FT iron-sulfur binding region signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 159804..159875 FT /note="HMMPfam hit to PF00037, 4Fe-4S binding domain" FT misc_feature 159825..159860 FT /note="ScanRegExp hit to PS00198, 4Fe-4S ferredoxins, FT iron-sulfur binding region signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 160473..160544 FT /note="HMMPfam hit to PF00037, 4Fe-4S binding domain" FT misc_feature 160494..160529 FT /note="ScanRegExp hit to PS00198, 4Fe-4S ferredoxins, FT iron-sulfur binding region signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 160566..160637 FT /note="HMMPfam hit to PF00037, 4Fe-4S binding domain" FT misc_feature 160587..160622 FT /note="ScanRegExp hit to PS00198, 4Fe-4S ferredoxins, FT iron-sulfur binding region signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 160883..161512 FT /transl_table=11 FT /locus_tag="BP1471" FT /product="conserved hypothetical protein" FT /note="Similar to Vibrio cholerae chaperone, formate FT dehydrogenase-specific, putative Vc1515 TR:Q9KRW9 FT (EMBL:AE004230) (218 aa) fasta scores: E(): 1.1e-21, 43.54% FT id in 186 aa, and to Vibrio cholerae TorD protein Vc1720 FT TR:Q9KRC2 (EMBL:AE004250) (220 aa) fasta scores: E(): FT 0.0061, 25% id in 204 aa" FT /db_xref="GOA:Q7VY83" FT /db_xref="InterPro:IPR010395" FT /db_xref="UniProtKB/TrEMBL:Q7VY83" FT /protein_id="CAE41760.1" FT /translation="MNVSVTFASIAAPGFDEEVARAEIYGLLAQLYYAPPPSDLLAQLR FT AAPRQAPDQGGFLEASWQALVACAAEMGDDAVRAEYDALFGGVGKPDIYLFASHYLTGF FT LNEKPLVGLRDDLAALGLRRDAAMSETEDHIAYLCEVMRYLIAGDDVAVANLTQQRQFH FT ARHLRPWIADLCDAIAAHPAARFYGALAEFTRAFFSVEAQAFDMMA" FT CDS 161966..164857 FT /transl_table=11 FT /gene="fdhA" FT /locus_tag="BP1472" FT /product="formate dehydrogenase large subunit precursor" FT /EC_number="1.2.1.2" FT /note="Similar to Wolinella succinogenes formate FT dehydrogenase large subunit precursor FdhA TR:P28179 FT (EMBL:X54057) (939 aa) fasta scores: E(): 2.4e-89, 43.78% FT id in 973 aa, and to Campylobacter jejuni putative formate FT dehydrogenase large subunit FdhA or Cj1511 TR:Q9PMF2 FT (EMBL:AL139078) (934 aa) fasta scores: E(): 9.8e-103, FT 44.84% id in 961 aa" FT /db_xref="GOA:Q7VY82" FT /db_xref="InterPro:IPR006311" FT /db_xref="UniProtKB/TrEMBL:Q7VY82" FT /protein_id="CAE41761.1" FT /translation="MAQALPTMDRRTFLRRSGLGVGAGLAATQLSLVKRAEAAEGDGKV FT AIGNTKIEVRRTVCTHCSVGCAVDAVVENGVWVRQEPVFDSPINLGAHCAKGASVREHG FT HGEHRLRYPMKLVNGKYQRISWDTAYEEITAKLMQLRKESGPDSVYWIGSSKHNNEQSY FT LLRKFVSFWGSNNCDHQARICHSTTVAGVANTWGYGAMTNSYNDMQNSKVALYIGSNAA FT EAHPVSMLHMLHAKETGCKMIVVDPRFTRTAAKADQYVRIRSGTDIPFLFGLLYHIFKN FT GWEDQAYIDARVYGMDEVKADILAKWSPDKVEEACGVDEATMYSVAKTMHENRPGTLVW FT CMGQTQHSIGNAMVRASCIVQLALGNVGKSGGGANIFRGHDNVQGATDVGPNPDSLPGY FT YGLAEGSWKHFANTWGVDYEWIKDRYASPAMMTKPGITVSRWIDGVLENPDLIDQDTNL FT RAVFYWGHAPNSQTRGLEMKRAMDKLDLLVVVDPYPSATAAMAAMPGKAEDLNPNRAVY FT LLPAATQFETNGSCTASNRSLQWREKVIDPLWESRTDHMIMHQLAEKLGFGKELSKNYK FT MQKVKGMDEPVVEDILREINASVWAIGYTGQSPERLKAHMRNMHVFDVKTLRAKGGKDA FT ETGYDLTGDYFGLPWPCWGNPSLKHPGTANLYDTSLHVMDGSGNFRANFGVERNGVNLL FT AADGSHSKGADLTTGYPEFDHVLLKKLGWWEDLTPEEQKAAEGKNWKTDPSGGIIRVTM FT KVHGCHPFGNARARAVVWNFPDAIPQHREPIYGTRPDLVAKYPTHNDLKTFWRLPTLYT FT SLQQKNVAEKLYEKFPIILTSGRLVEYEGGGEETRSNPWLAELQQESFVELNPKAAADR FT GIRNGDRVWVLTPTGARLNVQALVTERVGPDTAFMPFHFSGHWQGVDMLASYPEGAAPI FT VRGEAVNTGTTYGYDSVTMMQETKTTICNIEKA" FT misc_feature 162134..162187 FT /note="ScanRegExp hit to PS00551, Prokaryotic molybdopterin FT oxidoreductases signature 1." FT misc_feature 163052..163075 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 163514..163651 FT /note="HMMPfam hit to PF00384, Molybdopterin FT oxidoreductase" FT misc_feature 164450..164836 FT /note="HMMPfam hit to PF01568, Molydopterin dinucleotide FT binding domain" FT CDS join(164868..165074,165076..165495) FT /pseudo FT /transl_table=11 FT /gene="fdhB" FT /locus_tag="BP1473" FT /product="formate dehydrogenase iron-sulfur subunit FT (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 69. The sequence has been checked FT and believed to be correct. Similar to Wolinella FT succinogenes formate dehydrogenase iron-sulfur subunit FdhB FT SW:FDHB_WOLSU (P27273) (200 aa) fasta scores: E(): 2.4e-49, FT 65.97% id in 194 aa, and to Vibrio cholerae formate FT dehydrogenase, iron-sulfur subunit Vc1512 TR:Q9KRX1 FT (EMBL:AE004229) (202 aa) fasta scores: E(): 7.4e-55, 73.43% FT id in 192 aa" FT /db_xref="PSEUDO:CAE41762.1" FT misc_feature 164883..164954 FT /note="HMMPfam hit to PF00037, 4Fe-4S binding domain" FT variation 165074..165075 FT /note="CC in pertussis; C(AA)C in parapertussis and FT bronchiseptica" FT misc_feature 165103..165174 FT /note="HMMPfam hit to PF00037, 4Fe-4S binding domain" FT misc_feature 165124..165159 FT /note="ScanRegExp hit to PS00198, 4Fe-4S ferredoxins, FT iron-sulfur binding region signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 165492..165725 FT /transl_table=11 FT /locus_tag="BP1474" FT /product="putative lipoprotein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VY81" FT /protein_id="CAE41763.1" FT /translation="MKTNPRLLLIAAAAVFGLAACTEKPQELHSGVVGKPAYDGTGSNF FT VAPGWKQGDKNSWQQELKVRAQRGQNEYTRVN" FT misc_feature 165492..165557 FT /note="Signal peptide predicted for BP1474 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.517 between residues 22 and 23" FT misc_feature 165522..165554 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 165738..166895 FT /transl_table=11 FT /gene="fdhC" FT /locus_tag="BP1475" FT /product="formate dehydrogenase subunit C precursor" FT /EC_number="1.2.1.2" FT /note="Similar to Wolinella succinogenes formate FT dehydrogenase subunit C precursor FdhC TR:P28180 FT (EMBL:X54057) (306 aa) fasta scores: E(): 2.3e-08, 27.75% FT id in 245 aa, and to Vibrio cholerae formate dehydrogenase, FT cytochrome B556 subunit Vc1511 TR:Q9KRX2 (EMBL:AE004229) FT (357 aa) fasta scores: E(): 3e-34, 36.9% id in 336 aa" FT /db_xref="GOA:Q7VY80" FT /db_xref="InterPro:IPR006471" FT /db_xref="UniProtKB/TrEMBL:Q7VY80" FT /protein_id="CAE41764.1" FT /translation="MIRSLFAALLASALLATAGAQTAAPSADAPAMGGIQSANIFEVKP FT DASEQPGYAEQTNAERAKVQPGNNAPMWRQVNSGQPGYSSLPASEAPEAGVLIQRFVQY FT PGSQYTTAGEAWRQVRNNWLIPYGGGLLLIVLVAIALFFLAKGPMKLREAETGRRIERF FT TYFERAAHWVNATAFVILALTGIVIAFGKFFLLPIMGSAAFGWMTWLLKTVHNFVGPVF FT AVSLLVVILTFIKDNLPRRDDLIWLRKGGGLITGAHVPSHRFNAGEKIMFWVGMLFLGA FT LAVASGLFLDQVFPGLSYVRGNMQIAHMVHAASVVLMMCMIMGHIYLGTIGMRGAFKAM FT KTGYVDETWAREHHELWYDDIKAGKIPAQRTPDKSAKRLTRPAGA" FT misc_feature 165738..165806 FT /note="Signal peptide predicted for BP1475 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.649 between residues 23 and 24" FT misc_feature join(165750..165809,166104..166172,166269..166337, FT 166380..166439,166551..166619,166662..166730) FT /note="6 probable transmembrane helices predicted for FT BP1475 by TMHMM2.0 at aa 5-24, 123-145, 178-200, 215-234, FT 272-294 and 309-331" FT CDS 166918..167292 FT /transl_table=11 FT /locus_tag="BP1476" FT /product="putative exported protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VY79" FT /protein_id="CAE41765.1" FT /translation="MKKIAALIIALAAAPALAKLPPPTPEAAAKAKETAAKAAWSGKMD FT AFRLCRVQDEVAATYFERAKAAGKTTRAPMATPECKDPGPFVYNVEDKPREAAGAHSPA FT DTAAKPPSSPAPAAEQKPGQ" FT misc_feature 166918..166971 FT /note="Signal peptide predicted for BP1476 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.996 between residues 18 and 19" FT CDS complement(167326..168441) FT /transl_table=11 FT /locus_tag="BP1477" FT /product="conserved hypothetical protein" FT /note="Similar to Alcaligenes eutrophus formate FT dehydrogenase FdsR TR:Q9RBF7 (EMBL:AJ007718) (299 aa) fasta FT scores: E(): 5.6e-30, 39.23% id in 288 aa, and to Bacillus FT subtilis YvgK protein YvgK TR:O32207 (EMBL:Z99121) (308 aa) FT fasta scores: E(): 7.8e-19, 30.47% id in 315 aa" FT /db_xref="GOA:Q7VY78" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VY78" FT /protein_id="CAE41766.1" FT /translation="MRHIEISYSLGPSDPRPALLRNALMDLLSAVREHGSISAAAKALD FT LSYRHVWGELKKWEQTLGRTLIVWDKGQPARLNEFGEKLLWAERQAQARLAPQINALRA FT DLERAFAVAFDDAAHVVPLYASHDNALQALREHAVASAKLHLDIRFTGSVDAISALNEG FT RCVMAGFHTREAPEPGSLAERTYKPMLQPGLHKIIGFAQRSQGLIVARGNPHGITSLAD FT LAASGVRYVNRALGTGTRVLFDELLERAGLKPAAIAGYERTEPSHAAVAHAIVSGSADA FT GLGIEPAAHRERLDFIPLVRENYFLVCLKSTLDQPSTQALLSILRSPAWQATLAAIPGY FT APAQTGQVLSMRRVLPWWDFARKKVRRTRPA" FT misc_feature complement(168274..168339) FT /note="Predicted helix-turn-helix motif with score 1105 FT (+2.95 SD) at aa 65-86, sequence GSISAAAKALDLSYRHVWGELK" FT CDS join(168605..169216,169219..169344) FT /pseudo FT /transl_table=11 FT /locus_tag="BP1478" FT /product="putative permease component of ABC transporter FT (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 204. The frameshift occurs within FT a dimeric tract of (TG)2. The sequence has been checked and FT believed to be correct. Similar to Eubacterium FT acidaminophilum permease component of tungstate ABC FT transporter TupB TR:CAC40783 (EMBL:AJ291988) (228 aa) fasta FT scores: E(): 9.2e-25, 37.96% id in 216 aa, and to FT Methanothermobacter thermautotrophicus sulfate transport FT system permease protein Mth478 TR:O26578 (EMBL:AE000832) FT (235 aa) fasta scores: E(): 6e-27, 39.23% id in 209 aa" FT /db_xref="PSEUDO:CAE41767.1" FT variation 169215..169218 FT /note="(TG)2 in pertussis; (TG)1 in parapertussis and FT bronchiseptica" FT CDS 169341..170045 FT /transl_table=11 FT /locus_tag="BP1479" FT /product="probable ATP-binding component of ABC FT transporter" FT /note="Similar to Pseudomonas aeruginosa probable FT ATP-binding component of ABC transporter Pa3442 TR:Q9HYG4 FT (EMBL:AE004765) (274 aa) fasta scores: E(): 1.7e-16, 41.12% FT id in 214 aa, and to Agrobacterium tumefaciens Agr_l_1395p FT TR:AAK89278 (EMBL:AE008268) (276 aa) fasta scores: E(): FT 2.6e-17, 37.26% id in 212 aa" FT /db_xref="GOA:Q7VY77" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VY77" FT /protein_id="CAE41768.1" FT /translation="MTVLFDLRGADVYYGPVHALRAAELRICAGEQVALVGANGSGKST FT LLRLLHGLVTPRAGQARCAARARQAMVFQQPYMLRTSAQNNVALALWLRGMRWRDARAR FT ALHALERVELIELAGRNAKSMSGGQQQRLALARAWALEPEVLLLDEPTASLDPHAKRDV FT ELLMEQFARPRDGLAPAMIFSSHNLGQVKRLARRVIYLERGRILADLPVDQFFNGPLPE FT AAALFVKGERIP" FT misc_feature 169428..169952 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 169449..169472 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 169713..169757 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature." FT CDS 170042..170860 FT /transl_table=11 FT /locus_tag="BP1480" FT /product="putative exported protein" FT /note="Similar to Eubacterium acidaminophilum extracellular FT tungstate binding protein precursor TupA TR:CAC40782 FT (EMBL:AJ291988) (286 aa) fasta scores: E(): 1e-40, 51.21% FT id in 248 aa, and to Vibrio cholerae hypothetical protein FT Vc1523 TR:Q9KRW1 (EMBL:AE004231) (275 aa) fasta scores: FT E(): 2.8e-42, 47.14% id in 263 aa" FT /db_xref="GOA:Q7VY76" FT /db_xref="InterPro:IPR006059" FT /db_xref="UniProtKB/TrEMBL:Q7VY76" FT /protein_id="CAE41769.1" FT /translation="MKILNAIRRGLALAGLATVLAAPLAARAETIVMASTTSTEQSGLF FT GHLLPAFKKASGIDIKVVAQGTGQALDMARRGDADVLFVHDQVAEEKFVADGYAVKRYP FT VMYNDFILVGPAKDPAGVKGNDIVAALGKLAKDNADFISRGDKSGTHAAELRFWKQTGS FT DSKGSGYKECGCGMGPALNMGSSMNAYVLSDRGTWLSFKNPGELKILVEGDKRLFNQYG FT VMVVNPAKFPHVKAKAAQQFVDWVTSKAGQDAIASYQVNGQQLFFPNADK" FT misc_feature 170042..170125 FT /note="Signal peptide predicted for BP1480 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.862 between residues 28 and 29" FT CDS 171144..172547 FT /transl_table=11 FT /gene="leuC" FT /locus_tag="BP1481" FT /product="3-isopropylmalate dehydratase large subunit" FT /EC_number="4.2.1.33" FT /note="Similar to Escherichia coli 3-isopropylmalate FT dehydratase large subunit LeuC or B0072 SW:LEU2_ECOLI FT (P30127) (465 aa) fasta scores: E(): 6.1e-119, 63.3% id in FT 466 aa, and to Pseudomonas aeruginosa 3-isopropylmalate FT dehydratase large subunit LeuC or Pa3121 TR:Q9HZA3 FT (EMBL:AE004736) (474 aa) fasta scores: E(): 1.1e-142, 74.3% FT id in 467 aa" FT /db_xref="GOA:Q7VY75" FT /db_xref="InterPro:IPR015936" FT /db_xref="UniProtKB/Swiss-Prot:Q7VY75" FT /protein_id="CAE41770.1" FT /translation="MAQTLYDKLWDAHVVHQESDGTCMLYIDRHLLHEVTSPQAFEGLA FT LAGRQPWRVGANLAVADHNVPTLNRAQGIEDPISRLQVDTLDDNCAKYGITEFRMNDLR FT QGIVHVIGPEQGATLPGMTVVCGDSHTSTHGALGALAFGIGTSEVEHVLATQTLLMKKA FT KSMQINVEGELPFGCTAKDVVLHIIGIIGTAGGTGHAIEFSGSTIRGLSVEGRMTVCNM FT AIEAGARSGMVAVDDKTIDYFRGRPFAPVGVLWDQAVGYWRTLHSDAGARFDRVINVDA FT RDIKPQVTWGTSPEMVLPVDGRVPDPDREKDDVRRSGMERALEYMGLKPNTPLVDIRVD FT RVFIGSCTNSRIEDLRAAAVVARGKRVAANVRQAMVVPGSGLVKQQAEREGLDKIFIEA FT GFEWREPGCSMCLAMNADRLEPGERCASTSNRNFEGRQGQGGRTHLVSPAMAAAAAVAG FT HFVDVRSFR" FT misc_feature 171153..172517 FT /note="HMMPfam hit to PF00330, Aconitase family (aconitate FT hydratase)" FT misc_feature 172158..172208 FT /note="ScanRegExp hit to PS00450, Aconitase family FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 172341..172382 FT /note="ScanRegExp hit to PS01244, Aconitase family FT signature 2. Confirmed by InterPro eMOTIF pattern match." FT CDS 172562..173212 FT /transl_table=11 FT /gene="leuD" FT /locus_tag="BP1482" FT /product="3-isopropylmalate dehydratase small subunit" FT /EC_number="4.2.1.33" FT /note="Similar to Escherichia coli 3-isopropylmalate FT dehydratase small subunit LeuD or B0071 SW:LEUD_ECOLI FT (P30126) (201 aa) fasta scores: E(): 4.8e-44, 57.35% id in FT 204 aa, and to Pseudomonas aeruginosa 3-isopropylmalate FT dehydratase small subunit LeuD or Pa3120 TR:Q9HZA4 FT (EMBL:AE004736) (212 aa) fasta scores: E(): 1.7e-65, 74.76% FT id in 210 aa. Also similar to BP1356, 46.190% identity FT (48.259% ungapped) in 210 aa overlap." FT /db_xref="GOA:Q7VY74" FT /db_xref="InterPro:IPR000573" FT /db_xref="UniProtKB/Swiss-Prot:Q7VY74" FT /protein_id="CAE41771.1" FT /translation="MQAFTQHEGLVALLDRENVDTDLIIPKQFLKSIKRAGFGPNLFDE FT LRYLDHGEPGMDNSKRPLNSDFVLNQPRYQGASVLLARKNFGCGSSREHAPWALTQYGF FT RAIIAPSYADIFFNNSFKNGLLPIVLGELEVARLFDEVKAFPGFKLNIDLERQVVIAPD FT GRELGFDIEPFRKYCLLNGLDDIGLTLRQADKIRAFEAERLARHPWLESRPVA" FT misc_feature 172562..173095 FT /note="HMMPfam hit to PF00694, Aconitase C-terminal domain" FT CDS 173294..174370 FT /transl_table=11 FT /gene="leuB" FT /locus_tag="BP1483" FT /product="3-isopropylmalate dehydrogenase" FT /EC_number="1.1.1.85" FT /note="Similar to Escherichia coli 3-isopropylmalate FT dehydrogenase LeuB or B0073 SW:LEU3_ECOLI (P30125) (362 aa) FT fasta scores: E(): 1.4e-65, 53.48% id in 359 aa, and to FT Neisseria meningitidis 3-isopropylmalate dehydrogenase FT Nmb1031 TR:Q9JZI9 (EMBL:AE002453) (356 aa) fasta scores: FT E(): 2.3e-87, 66.66% id in 360 aa. Also similar to BP2291 FT (35.457% identity in 361 aa overlap)" FT /db_xref="GOA:Q7VY73" FT /db_xref="InterPro:IPR004429" FT /db_xref="UniProtKB/Swiss-Prot:Q7VY73" FT /protein_id="CAE41772.1" FT /translation="MTHQIAVLPGDGIGPEIVEQAERVLKALDLPLELRQAPVGGAAFD FT QFEHPLPPATLELAQGSHAVLFGAVGDWKYDTLPREFRPEQAILGLRKALGLFANLRPA FT ILYPELASASSLKPEIVSGLDILIIRELTGDIYFGTPRGVRTAADGAFAGEREGYDTMR FT YAESEVRRIARIGFESARKRNKKLCSVDKANVLETSQFWRDLVIEVSRDYLDVELSHMY FT VDNAAMQLVRNPRQFDVIVTGNLFGDILSDEAAMLTGSIGMLPSASLNAAGQGLYEPSH FT GSAPDIAGQGIANPLATILSAAMLLRYSLNLAPQADRVEAAVRKVLADGLRTADIHEAG FT TTKVSTSQMGDAVLKALG" FT misc_feature 173303..174352 FT /note="HMMPfam hit to PF00180, Isocitrate/isopropylmalate FT dehydrogenase" FT misc_feature 174023..174082 FT /note="ScanRegExp hit to PS00470, Isocitrate and FT isopropylmalate dehydrogenases signature. Confirmed by FT InterPro eMOTIF pattern match." FT CDS 174557..175687 FT /transl_table=11 FT /gene="asd" FT /locus_tag="BP1484" FT /product="aspartate-semialdehyde dehydrogenase" FT /EC_number="1.2.1.11" FT /note="Previously sequenced as Bordetella pertussis FT aspartate-semialdehyde dehydrogenase Asd SW:DHAS_BORPE FT (P41399) (376 aa) fasta scores: E(): 4.9e-151, 100% id in FT 376 aa, and similar to Escherichia coli FT aspartate-semialdehyde dehydrogenase Asd or Hom or B3433 or FT Z4797 or Ecs4278 SW:DHAS_ECOLI (P00353) (367 aa) fasta FT scores: E(): 3.3e-95, 65.76% id in 368 aa" FT /db_xref="GOA:P41399" FT /db_xref="HSSP:1BRM" FT /db_xref="InterPro:IPR012280" FT /db_xref="UniProtKB/Swiss-Prot:P41399" FT /protein_id="CAE41773.1" FT /translation="MTQAVGLVGWRGMVGSVLMQRMRDENDFALIEPVFFSTSNAGGAA FT PAWAEGAGSLQNAYDIDALKKLPIIVTAQGGDYTSEVYPKLRGAGWQGIWIDAASTLRM FT ADDAIIVLDPVNRPVIDAALKRGVRNFVGGNCTVSCMLMGLAGLFNNDLVEWMSSMTYQ FT AASGGGAQHMRELLTQFGLLNQAVKPLLDDPAAAILDIDRGVLARQQDPSLPQEHFGVP FT LGGNLIPWIDKDLGDGMSREEWKAEAETNKILGRGAAFGTPATPIDGLCVRIGAMRCHS FT QALTIKLKRDVPLDEIEDLIAAGTQWAKVVPNTKEDTVKALTPVAVTGTLDIPVGRLRK FT LSMGLQYLGAFTVGDQLLWGAAEPLRRMLRIALAEA" FT misc_feature 174563..175678 FT /note="HMMPfam hit to PF01118, Semialdehyde dehydrogenase, FT NAD binding domain" FT misc_feature 175355..175399 FT /note="ScanRegExp hit to PS01103, Aspartate-semialdehyde FT dehydrogenase signature. Confirmed by InterPro eMOTIF FT pattern match." FT CDS 175858..177441 FT /transl_table=11 FT /locus_tag="BP1485" FT /product="putative membrane protein" FT /note="Similar to The N-terminal region of Pseudomonas FT aeruginosa twitching motility protein FimV TR:O87015 FT (EMBL:U93274) (927 aa) fasta scores: E(): 4.1e-09, 28.87% FT id in 561 aa" FT /db_xref="GOA:Q7VY72" FT /db_xref="InterPro:IPR020012" FT /db_xref="UniProtKB/TrEMBL:Q7VY72" FT /protein_id="CAE41774.1" FT /translation="MRSTLRPLQPARRSQALSWALVLALGAGATGAEAARLGHARVVSP FT PGAALQVVVPLLELSADDLATLQVSLADEAAWRQAGLTPPVPLSSATVRIEPGADASRR FT NVRISSSQPPAGNAVDVLLDLRSGAGQRQVQVTVLVPPRGSAARVAPASVGTPAPAGQA FT SAGSIDVRRGDTLFGIAQRNAVAGASVYQMLVALWRANPEAFIQNNMNLVRAGETLDIP FT DAATVRAIDPAEARRIFAQHAEAFARYRGRAGALAAGGAAVSGTGEAGAGRLGSAAQAE FT AAGAATAQDRLRLSSAQGGANAQADAAGDARASSGRALDDAQQRVEKLQSNVDALSQAA FT GAGKTASGEGSAPANASAGAGGQPGADGKAGADGKPGSDGKPGADGKPGADGKPGGAAA FT GAGAATQAGAASAGSTGGNGAAGSAGAGTAGSGPAAAAAKGESSQGGMPGWLADNLLAI FT VTAVLALIVFIVAWALRRAGARRDDDDEASAAYPEPTLDTAALTRKLDSISLDLDEPPT FT DEPRPGGKRT" FT misc_feature 177220..177279 FT /note="1 probable transmembrane helix predicted for BP1485 FT by TMHMM2.0 at aa 495-514" FT CDS 177445..178257 FT /transl_table=11 FT /gene="truA" FT /gene_synonym="hisT" FT /gene_synonym="asuC" FT /locus_tag="BP1486" FT /product="tRNA pseudouridine synthase A" FT /EC_number="4.2.1.70" FT /note="Similar to Escherichia coli tRNA pseudouridine FT synthase A TruA or HisT or AsuC or LeuK or B2318 FT SW:TRUA_ECOLI (P07649) (270 aa) fasta scores: E(): 8.8e-46, FT 44.06% id in 261 aa, and to Pseudomonas aeruginosa tRNA FT pseudouridine synthase A TruA or HisT or Pa3114 FT SW:TRUA_PSEAE (O87016) (285 aa) fasta scores: E(): 4e-50, FT 48.33% id in 271 aa" FT /db_xref="GOA:Q7U363" FT /db_xref="InterPro:IPR001406" FT /db_xref="UniProtKB/Swiss-Prot:Q7U363" FT /protein_id="CAE41775.1" FT /translation="MSRIALGLAYDGSAWQGWQTQPHGVTVQDQVEAALASFAGGGGPV FT ATVCAGRTDTGVHAAMQVIHLDTDLQRRDESWVRGVNAFLPPSIVVQWARPVSEAFHAR FT FSARSRTYVYLLWRGRVRPALWAGRAGWAFQPLDVPAMRAAARALLGEHDFSSFRSSQC FT QARHPVRTLHRLDIDERGAFLVFTLRANAFLHHMVRNLIGALLQVGQGREPVAWMDALL FT CARDRRLGAPTFMPDGLYLSAIEYPAEFGFDELDGGITLLSPFTGALG" FT misc_feature 177520..178122 FT /note="HMMPfam hit to PF01416, tRNA pseudouridine synthase" FT CDS 178402..179496 FT /transl_table=11 FT /gene="smoM" FT /locus_tag="BP1487" FT /product="putative periplasmic solute-binding protein" FT /note="Similar to Rhodobacter sphaeroides periplasmic FT mannitol-binding protein SmoM TR:O30835 (EMBL:AF018073) FT (365 aa) fasta scores: E(): 1.1e-78, 54.9% id in 357 aa, FT and to Rhizobium loti periplasmic mannitol-binding protein, FT SmoM Mlr5166 TR:Q98CF9 (EMBL:AP003005) (369 aa) fasta FT scores: E(): 5.4e-77, 54.62% id in 368 aa" FT /db_xref="GOA:Q7VY71" FT /db_xref="InterPro:IPR018389" FT /db_xref="UniProtKB/TrEMBL:Q7VY71" FT /protein_id="CAE41776.1" FT /translation="MQRRSFLKQATLGAAAGGAALAAPPLAQDSPTIHWRLASSFPRSA FT DAIFTGGENLAKYVSEATDGKFSIRAFPAGEIVPALQVLDAVQNGTIECGHTASYYYFG FT KDPALCFDGAVPFGLNTRQMNAWMRHGDGLKLTRELFQKYNVVNFPCGYTGTQMGGWFR FT NEIKSVDDLKGLRFRASAFAGAVLSRLGVVPQQIAGGDIYPALEKGTIDAAEWIGPYDD FT EKLGFHKVAKNYYFPGWWEGTLQVSLYVNQDVYNQLPKHYQAALAQAAAAATNDMIAKY FT DAENPAALRRLVAEGAQLKAFPKSVMEACYTQAQAVYKEFSEKDPMFKRVYDSMVAFRD FT NEIPWFRVAEGSYDGFMATVARGK" FT misc_feature 178402..178482 FT /note="Signal peptide predicted for BP1487 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.713 between residues 27 and 28" FT CDS 179708..180337 FT /transl_table=11 FT /locus_tag="BP1488" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti hypothetical FT transmembrane protein Smc04248 TR:CAC46497 (EMBL:AL591788) FT (191 aa) fasta scores: E(): 6.9e-34, 53.48% id in 172 aa, FT and to Rhizobium loti Mll5171 protein TR:Q98CF5 FT (EMBL:AP003005) (194 aa) fasta scores: E(): 3.9e-34, 50.78% FT id in 191 aa. Almost identical to BP0596, 99.522% identity FT in 209 aa overlap." FT /db_xref="InterPro:IPR007387" FT /db_xref="UniProtKB/TrEMBL:Q7VY70" FT /protein_id="CAE41777.1" FT /translation="MKALLALSRGIDALNLRVGRAVTWVTLLVVLVSAGNAVVRKVFHS FT SSNAWLELQWYMFGAMFLLTAGYTLLKNEHVRVDILSSRLPRHKQIWIEIFGVVFFLLP FT ACTLIMVLSWPVFMDSYLSGEQSSNSGGLIRWPVKLLIPVGFALLVLAGLSHLIKCIGF FT LRGQCPDPTAREGSKSAEELLAEEIAREALEREASVQEQRNNHEGR" FT misc_feature join(179768..179824,179867..179920,179978..180046, FT 180104..180172) FT /note="4 probable transmembrane helices predicted for FT BP1488 by TMHMM2.0 at aa 21-39, 54-71, 91-113 and 133-155" FT CDS 180340..182007 FT /transl_table=11 FT /locus_tag="BP1489" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti hypothetical FT transmembrane protein Smc04249 TR:CAC46498 (EMBL:AL591788) FT (597 aa) fasta scores: E(): 8.1e-127, 61.42% id in 560 aa, FT and to Rhizobium loti Mll5170 protein Mll5170 TR:Q98CF6 FT (EMBL:AP003005) (589 aa) fasta scores: E(): 2.5e-122, FT 61.38% id in 549 aa" FT /db_xref="GOA:Q7VY69" FT /db_xref="InterPro:IPR004681" FT /db_xref="UniProtKB/TrEMBL:Q7VY69" FT /protein_id="CAE41778.1" FT /translation="MEFLIANLAPIMFATLVLFLLLGFPVAFALAANGILYGLVGIELD FT LLSPALFQALPQRVFGIISNDTLLAVPFFTLMGLVLERSGMAEDLLETIGQVFGPLRGG FT LAIAVVFVGAMLAATTGVVSASVISMGLISLPIMLRYGYDRRLASGVIAASGTLSQIIP FT PSLVLIILADQLGRSIGDMYRAAMVPGFVLAGAYIAYVVIVSLVKPSAAPALPEEARRF FT REPNGSRGGRSLLVLMLISSLSAYVLGQWLENDTAPVDEQVVVSLLLWGLTAFVIAIAN FT KVFRLKMLSALAERVTFVMIPPLFLIFLVLGTIFIGVATPTEGGAMGAVGAIIMALIRR FT RLTLDLLKQAMDTTTKLSCFVVFILVGSTVFGLTFRGVNGDLWVEHLLIGLPGGEWGFL FT IVVSVLTFVLAFFLDFFELAFIIVPLLGPVADKMGIDLIWFGIILAVNMQTSFMHPPFG FT FALFYLRSVAPKDAYKDKITGKIIQPVTTGQIYWGSVPFIVIQLFMVAAVMLFPGMVMH FT YKGGQSTVDPASVKIEIESNYGTNIYGDESSDPGAAFK" FT misc_feature 180340..180432 FT /note="Signal peptide predicted for BP1489 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.703 between residues 31 and 32" FT misc_feature join(180376..180444,180514..180582,180619..180687, FT 180700..180768,180787..180855,180883..180951, FT 181027..181095,181123..181191,181225..181293, FT 181303..181371,181408..181476,181519..181578, FT 181597..181665,181693..181746,181807..181875) FT /note="15 probable transmembrane helices predicted for FT BP1489 by TMHMM2.0 at aa 13-35, 59-81, 94-116, 121-143, FT 150-172, 182-204, 230-252, 262-284, 296-318, 322-344, FT 357-379, 394-413, 420-442, 452-469 and 490-512" FT CDS 182022..182678 FT /transl_table=11 FT /gene="trpF" FT /locus_tag="BP1490" FT /product="N-(5'-phosphoribosyl)anthranilate isomerase" FT /EC_number="5.3.1.24" FT /note="Similar to Pseudomonas aeruginosa FT N-(5'-phosphoribosyl)anthranilate isomerase TrpF or Pa3113 FT SW:TRPF_PSEAE (Q59649) (211 aa) fasta scores: E(): 1.2e-28, FT 49.52% id in 210 aa, and to Acinetobacter calcoaceticus FT N-(5'-phosphoribosyl)anthranilate isomerase TrpF FT SW:TRPF_ACICA (P16923) (213 aa) fasta scores: E(): 1.4e-26, FT 44.9% id in 216 aa" FT /db_xref="GOA:Q7VY68" FT /db_xref="HSSP:1DL3" FT /db_xref="InterPro:IPR001240" FT /db_xref="UniProtKB/Swiss-Prot:Q7VY68" FT /protein_id="CAE41779.1" FT /translation="MRTRVKICGLTREQDIASAVQAGADAIGFVFYPASKRHVDPARAA FT QLRREVPAFVDVVALFVNPRPDEVQAVLDHVAPDLLQFHGDETPQDCGRYGRRYLRAFR FT AGAPGLDSAAGLAAACRQYADAAGWLFDSYSAGYGGSGQGFDHGLLAGVQADPASCAIV FT LAGGLHPGNVADAVRAVRPWAVDVSSGVEDAPGIKSAGKIRQLMAAIKSVDQVAR" FT misc_feature 182034..182648 FT /note="HMMPfam hit to PF00697, FT N-(5'phosphoribosyl)anthranilate (PRA) isomerase" FT tRNA 182713..182789 FT /note="tRNA Val anticodon GAC, Cove score 88.50" FT repeat_region 183056..183087 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 183056..184108 FT CDS 183158..184108 FT /transl_table=11 FT /locus_tag="BP1491" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE41780.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 183416..183481 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 183539..184072 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(184077..184108) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 184140..185237 FT /transl_table=11 FT /locus_tag="BP1492" FT /product="hypothetical protein" FT /note="Similar to the C-terminal regions of Salmonella FT typhimurium AdrA protein AdrA TR:Q9L401 (EMBL:AJ271071) FT (370 aa) fasta scores: E(): 8.8e-15, 34.71% id in 193 aa, FT and to Escherichia coli hypothetical protein YaiC or B0385 FT SW:YAIC_ECOLI (P21830) (371 aa) fasta scores: E(): 1e-14, FT 34.57% id in 188 aa" FT /db_xref="InterPro:IPR000160" FT /db_xref="UniProtKB/TrEMBL:Q7VY67" FT /protein_id="CAE41781.1" FT /translation="MCLGMAGEHMAPNSKHLSLHMPVDFIDALAQAESIDEILKVVATW FT FMEMFVADRASITFPVNDSHLRVVALEGNRVIDVDAPVPIHGTMVGRVFSRGQAEICDD FT LAASTDLDCLILASRGLGSCLDAPLRSGRDCYGTINVGRRDRNGFTLADMRKIEALAMW FT IATLIRVHRQVERLTHLSRTDPLTQIMNRRAFTESFQTRRLEGERRRAEVGTGLGFAVV FT DIDHFKQINDTYGHDVGDVVLAFVGKMMNEFFRESDCVARFGGEEFCVLMQDVDEGGMQ FT RLLERFRVALGDCVVTHSAGTVSITASIGAVLVKTSVAGIDRAFRSADLALYKAKADGR FT NRVRIAPSAEQSHAGNPANRLCYPG" FT misc_feature 184239..184658 FT /note="HMMPfam hit to PF01590, GAF domain" FT misc_feature 184659..185165 FT /note="HMMPfam hit to PF00990, GGDEF domain" FT CDS complement(185234..186184) FT /transl_table=11 FT /locus_tag="BP1493" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q84CT8" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q84CT8" FT /protein_id="CAE41782.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT repeat_region 185234..185265 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(185234..186286) FT misc_feature complement(185270..185803) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(185861..185926) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(186255..186286) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 186283..186609 FT /pseudo FT /transl_table=11 FT /gene="hemN" FT /locus_tag="BP1494" FT /product="oxygen-independent coproporphyrinogen III oxidase FT (Pseudogene)" FT /EC_number="1.-.-.-" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to The C-terminal regions of FT Alcaligenes eutrophus oxygen-independent coproporphyrinogen FT III oxidase HemN SW:HEMN_ALCEU (O34162) (491 aa) fasta FT scores: E(): 8.1e-12, 47.27% id in 110 aa, and to FT Escherichia coli oxygen-independent coproporphyrinogen III FT oxidase HemN or B3867 SW:HEMN_ECOLI (P32131) (457 aa) fasta FT scores: E(): 5.2e-06, 35.35% id in 99 aa" FT CDS complement(186606..186998) FT /transl_table=11 FT /locus_tag="BP1495" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3688 TR:Q9HXV2 (EMBL:AE004788) (114 aa) fasta FT scores: E(): 3.7, 27.55% id in 98 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VY66" FT /protein_id="CAE41784.1" FT /translation="MAKHHQASGTLCVQWLCPGPAQQRALLELALRCLRDDRLEIRRAL FT RQRDNATVRERLHRAKGAICTLWPDPETLARLEAVHRQLPRRGSQLWSQAAALESRLLQ FT LEQAMLASLDALGGDPMAQEQQPAPP" FT CDS complement(187004..187663) FT /transl_table=11 FT /locus_tag="BP1496" FT /product="probable two-component response regulator" FT /note="Similar to Escherichia coli capsular synthesis FT regulator component B RcsB or B2217 or Z3476 or Ecs3106 FT SW:RCSB_ECOLI (P14374) (216 aa) fasta scores: E(): 1.7e-12, FT 30.73% id in 205 aa, and to Pseudomonas aeruginosa probable FT two-component response regulator Pa3714 TR:Q9HXS7 FT (EMBL:AE004790) (213 aa) fasta scores: E(): 6.9e-16, 32.38% FT id in 210 aa" FT /db_xref="GOA:Q7VY65" FT /db_xref="InterPro:IPR000792" FT /db_xref="UniProtKB/TrEMBL:Q7VY65" FT /protein_id="CAE41785.1" FT /translation="MLLSRPSRRLRVAILDDHPAVAVGLSAYLGEHGDFEVALTETNAV FT ALAHQLKRHPCDAAVIDFFMPAQSWDGVDFIRRLRRLCPDMAVITISAGKAHETEYAAF FT RAGANGFLPKGAPLSLLAELIRTTVVSRRAFFSARTGQLRATIPDPPDSRLTNAEREIL FT RQIAKGFSVTQISGRLLRSKKTVSTHKRRAMKKLGLADDLALALYLSEKFEQNVYG" FT misc_feature complement(187013..187210) FT /note="HMMPfam hit to PF00196, Bacterial regulatory FT proteins, luxR family" FT misc_feature complement(187076..187159) FT /note="ScanRegExp hit to PS00622, Bacterial regulatory FT proteins, luxR family signature." FT misc_feature complement(187289..187636) FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain" FT CDS 188168..190117 FT /transl_table=11 FT /gene="thrS" FT /locus_tag="BP1497" FT /product="threonyl-tRNA synthetase" FT /EC_number="6.1.1.3" FT /note="Similar to Escherichia coli threonyl-tRNA synthetase FT ThrS or B1719 SW:SYT_ECOLI (P00955) (642 aa) fasta scores: FT E(): 7.7e-150, 56.34% id in 646 aa, and to Pseudomonas FT aeruginosa threonyl-tRNA synthetase ThrS or Pa2744 FT TR:Q9I099 (EMBL:AE004702) (640 aa) fasta scores: E(): FT 6.1e-162, 59.62% id in 639 aa" FT /db_xref="GOA:Q7VY64" FT /db_xref="HSSP:1EVL" FT /db_xref="InterPro:IPR012947" FT /db_xref="UniProtKB/Swiss-Prot:Q7VY64" FT /protein_id="CAE41786.1" FT /translation="MVQITLPDGSQRQYPGPVTVAEVAQSIGAGLAKAALAGRVAFDGA FT EPRLVDTSFRIDNDAQLAIVTAKDADGLDLIRHSTAHLLAYAVKSLFPDAQVTIGPVID FT NGFYYDFSYKRPFTPEDLQAIEKKMAELARKDEVVTREEWSRDEAVAYFKGIGEVYKAE FT IIASIPSNETLSLYREGDFIDLCRGPHVPSTGKLKVFKLMKVAGAYWRGDSKNEMLQRI FT YGTAWASKDDQDAYLHMLEEAERRDHRKIGRELDLFHFQDEAPGLIFWHPKGWALWQQV FT EQYMRKVYQDNGYQEVKAPQILDLTLWKKTGHWDNYRENMFTTESENRVYGLKPMNCPG FT HVQIFNAGLHSYRELPLRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIFCTEDQLQD FT ECAAFTALLQKVYKDFGFTEVLYKVATRPEKRIGSDEIWDKAETALMESLRRTGCEFEI FT SPGEGAFYGPKVEYTLKDAIGRHWQCGTIQVDFSMPVRLGAEYVDQNDQRRPPVMLHRA FT ILGSLERFIGMLIENHAGAMPPWLAPLQAVVCCISEHSAEYAAQITQSLKKQGFRVQAD FT LRGEKITRKIREHSLQKIPYLLVVGDKEMQNGTVAVRGLGGLDLGVIALDDFIARLAED FT ISTRRNVTQLASAA" FT misc_feature 188897..190030 FT /note="HMMPfam hit to PF00587, tRNA synthetase class II (G, FT H, P, S and T)" FT misc_feature 189263..189328 FT /note="ScanRegExp hit to PS00179, Aminoacyl-transfer RNA FT synthetases class-II signature 1. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 189722..189751 FT /note="ScanRegExp hit to PS00339, Aminoacyl-transfer RNA FT synthetases class-II signature 2." FT CDS 190189..190683 FT /transl_table=11 FT /gene="infC" FT /gene_synonym="fit" FT /locus_tag="BP1498" FT /product="translation initiation factor IF-3" FT /note="Similar to Escherichia coli translation initiation FT factor IF-3 InfC or Fit or B1718 SW:IF3_ECOLI (P02999) (180 FT aa) fasta scores: E(): 5.7e-39, 71.79% id in 156 aa, and to FT Klebsiella pneumoniae translation initiation factor IF-3 FT infC SW:IF3_KLEPN (P33318) (180 aa) fasta scores: E(): FT 2.5e-39, 71.79% id in 156 aa" FT /db_xref="GOA:Q7VY63" FT /db_xref="InterPro:IPR019814" FT /db_xref="UniProtKB/Swiss-Prot:Q7VY63" FT /protein_id="CAE41787.1" FT /translation="MRLIGLDGEQLGIVKIADAFRLSEQSDVDLVEIAPNADPPVCRLM FT DYGKFKYQEQKRQAEARSKQKVIQVKEVKFRPATDEGDYQVKLRNLRRFLEEGDKAKVT FT LRFRGREMAHQELGMRVLERVRDDLIELAQVEAMPKLEGRQMVMVLAPRKKAVGKPDAA FT G" FT misc_feature 190192..190650 FT /note="HMMPfam hit to PF00707, Translation initiation FT factor IF-3" FT misc_feature 190315..190356 FT /note="ScanRegExp hit to PS00938, Initiation factor 3 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 190820..191776 FT /transl_table=11 FT /gene="gshB" FT /gene_synonym="gsh-II" FT /locus_tag="BP1499" FT /product="glutathione synthetase" FT /EC_number="6.3.2.3" FT /note="Similar to Escherichia coli glutathione synthetase FT GshB or Gsh-II or B2947 SW:GSHB_ECOLI (P04425) (316 aa) FT fasta scores: E(): 8.5e-54, 46.77% id in 310 aa, and to FT Neisseria meningitidis glutathione synthetase GshB or FT Nma1747 TR:Q9JTJ6 (EMBL:AL162757) (318 aa) fasta scores: FT E(): 3.6e-64, 57.46% id in 315 aa" FT /db_xref="GOA:Q7VY62" FT /db_xref="InterPro:IPR013817" FT /db_xref="UniProtKB/Swiss-Prot:Q7VY62" FT /protein_id="CAE41788.1" FT /translation="MHVLFIIDPLPLLKAYKDSSVAMMQALQARGHTLSVALQGDLYID FT AGEVRTRFAPIALRDGADLHGHDWWRETGAADEAPLARFDAVVMRKDPPFDMEYVYSTH FT LLEYAQQQGARVFNSGAAIRNHPEKLAITEFPDLTTPTLVTRDMARIRAFHAAQGDVIV FT KPLDDMGGTGIFRLQRSEPNLNAILETLTDNGTRTIMAQRYIPEIVKGDKRILLIGGEP FT MPYSLARIPLAGETRGNLAAGGRGVAQPLSERDLHLARTVADRLAGRGLLLVGLDVIGD FT YITEVNVTSPTCFVEITEQTGFNVPEMFAVALESAAG" FT CDS 191787..192185 FT /transl_table=11 FT /locus_tag="BP1500" FT /product="putative IIa component of sugar transport PTS FT system" FT /note="Similar to Vibrio furnissii PTS permease for mannose FT subunit IIIman N terminal domain ManW TR:P96165 FT (EMBL:U65015) (146 aa) fasta scores: E(): 0.00043, 33.33% FT id in 138 aa, and to Neisseria meningitidis sugar transport FT PTS system IIa component nma0390 TR:Q9JWF9 (EMBL:AL162753) FT (145 aa) fasta scores: E(): 9.9e-08, 29.85% id in 134 aa" FT /db_xref="GOA:Q7VY61" FT /db_xref="InterPro:IPR004701" FT /db_xref="UniProtKB/TrEMBL:Q7VY61" FT /protein_id="CAE41789.1" FT /translation="MTGIVIVVHAPLGSAMRESVAHVLGDATEALAVHDIHPEDLPDDA FT APRVLADILRVDQGQGVLVLTDLIGATPANIAKRAVADAQAQGIQCCVLAGLNTPMLLR FT ALTYRNLSLAETREKALAGGVQGCLRVD" FT CDS 192301..192570 FT /transl_table=11 FT /gene="ptsH" FT /gene_synonym="phbH" FT /locus_tag="BP1501" FT /product="phosphocarrier protein HPr" FT /note="Similar to Alcaligenes eutrophus phosphocarrier FT protein HPr PhbH SW:PTHP_ALCEU (P23537) (89 aa) fasta FT scores: E(): 1.6e-15, 57.3% id in 89 aa, and to Neisseria FT meningitidis phosphocarrier protein HPr PtsH or Nma0391 or FT Nmb2045 SW:PTHP_NEIMA (Q9JQN1) (89 aa) fasta scores: E(): FT 3e-13, 49.43% id in 89 aa" FT /db_xref="GOA:Q7VY60" FT /db_xref="HSSP:1MU4" FT /db_xref="InterPro:IPR002114" FT /db_xref="UniProtKB/TrEMBL:Q7VY60" FT /protein_id="CAE41790.1" FT /translation="MPSSDIVISNKLGLHARAAAKLTQLASRFSSEIFISRGAQRVNAK FT SIMGVMMLAAGLGVTVKLEASGSDADQALSEIQTLFDNKFGEQE" FT misc_feature 192301..192531 FT /note="HMMPfam hit to PF00381, PTS HPr component FT phosphorylation site" FT misc_feature 192337..192360 FT /note="ScanRegExp hit to PS00369, PTS HPR component FT histidine phosphorylation site signature." FT misc_feature 192415..192462 FT /note="ScanRegExp hit to PS00589, PTS HPR component serine FT phosphorylation site signature." FT CDS 192692..194386 FT /transl_table=11 FT /gene="ptsI" FT /locus_tag="BP1502" FT /product="phosphoenolpyruvate-protein phosphotransferase" FT /EC_number="2.7.3.9" FT /note="Similar to Escherichia coli FT phosphoenolpyruvate-protein phosphotransferase PtsI or FT B2416 SW:PT1_ECOLI (P08839) (575 aa) fasta scores: E(): FT 1.9e-68, 39.03% id in 561 aa, and to Neisseria meningitidis FT phosphoenolpyruvate-protein phosphotransferase PtsI or FT Nma0392 TR:Q9JWF8 (EMBL:AL162753) (591 aa) fasta scores: FT E(): 1.8e-85, 44.82% id in 551 aa" FT /db_xref="GOA:Q7VY59" FT /db_xref="HSSP:1EZC" FT /db_xref="InterPro:IPR018274" FT /db_xref="UniProtKB/TrEMBL:Q7VY59" FT /protein_id="CAE41791.1" FT /translation="MARGYAIGRAVVMGAAALEVAHYRIAPEDAAAESQRLTEALAKAQ FT ADLLQMADTLPEDAPRELGAMLNVHRLLLGDPLLAEQALALIAERHYNAEWALTAQGQI FT LGQQFEAMEDEYLRERGGDVRQVIERALHVLAGTSAMLPDGAQLDGNDPLVVVAHDISP FT ADMLRLRGGRFAAFVTDLGGPTSHTAIVARSMGVPAVVALGNVRELVRDGDMLIVDGAD FT GVVVLNPSARILAEYQARQRVYADERAELALLRDEPAVTLDGIDIVLHANIELPEEASL FT SLACGAHGIGLFRSEFLFMGRPDLPGEEEQYEAYASVVKVMAGRPVTIRTLDIGADKTL FT DDEATVATNPALGQRAIRYCLARPEMFATQLRAILRASAHGPVRVLIPMIAHMHEVHAT FT YAALESARRELDARGQPYAARVEVGAMVEIPAIAIAIEPFVQALDFLSIGTNDLIQYTL FT AIDRGDHDVAGLYDPLHPAVLRLVANTINAGERAGKPVAVCGEMAGDARLTRLLLGLGL FT TEFSMHPQQLLDVKREVRRAHSNALRVKVAAALNRALPIDPDTLDAL" FT misc_feature 193154..194194 FT /note="HMMPfam hit to PF00391, PEP-utilizing enzyme, mobile FT domain" FT misc_feature 193235..193270 FT /note="ScanRegExp hit to PS00370, PEP-utilizing enzymes FT phosphorylation site signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 194021..194077 FT /note="ScanRegExp hit to PS00742, PEP-utilizing enzymes FT signature 2. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(194551..194775) FT /transl_table=11 FT /locus_tag="BP1503" FT /product="conserved hypothetical protein" FT /note="Similar to Homo sapiens proline rich peptide P-B FT precursor PbII TR:Q9UBN0 (EMBL:D29833) (79 aa) fasta FT scores: E(): 6.7, 38.59% id in 57 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VY58" FT /protein_id="CAE41792.1" FT /translation="MTTSPRGARRPGASARGWRKPALLAPMRRNHRMLAPALVHGMQDF FT ADCVEKPGGAGLDPPPPAAPHGYQGGAPG" FT CDS complement(join(194772..194852,194855..195199)) FT /pseudo FT /transl_table=11 FT /gene="osmC" FT /locus_tag="BP1504" FT /product="osmotically inducible protein C (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 115. The frameshift occurs within FT a polymeric tract of (G)4. The sequence has been checked FT and believed to be correct. Similar to Escherichia coli FT osmotically inducible protein C OsmC or B1482 SW:OSMC_ECOLI FT (P23929) (142 aa) fasta scores: E(): 2.4e-29, 57.85% id in FT 140 aa, and to Pseudomonas aeruginosa osmotically inducible FT protein OsmC or Pa0059 TR:Q9I773 (EMBL:AE004445) (151 aa) FT fasta scores: E(): 4.1e-38, 73.05% id in 141 aa" FT /db_xref="PSEUDO:CAE41793.1" FT misc_feature complement(join(194778..194852,194855..195196)) FT /note="HMMPfam hit to PF02566, OsmC-like protein" FT variation complement(194852..194855) FT /note="(G)4 in pertussis; (G)2 in parapertussis and FT bronchiseptica" FT CDS 195374..196324 FT /transl_table=11 FT /locus_tag="BP1505" FT /product="putative ornithine cyclodeaminase" FT /note="Similar to Rhizobium loti ornithine cyclodeaminase, FT Ocd2 Mlr3204 TR:Q98GR8 (EMBL:AP003001) (321 aa) fasta FT scores: E(): 2.6e-42, 47.79% id in 318 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa4908 FT TR:Q9HUQ5 (EMBL:AE004904) (310 aa) fasta scores: E(): FT 5.5e-41, 46.23% id in 305 aa" FT /db_xref="GOA:Q7VY57" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VY57" FT /protein_id="CAE41794.1" FT /translation="MLQIDAEHTRRALRFTAVIDALRDAFRGGAHVPPRHVHAIESGGA FT QGTTLIMPAWNDAGYFGVKVINIFPANTHQGLPGLHATYTLYSARTGVPLAQVDGDVVT FT AYRTAGAVALGASYLARADARVLLILGSGRIAGLVAQAMRAVRPIERVLVWNVRPAGAQ FT RLAAELREQGFDAQAATDLQAAVGQADIVSCATLSTEPLVRGEWLRPGVHLDLIGSFTP FT EMKETDPQCFAGTSVYVDTDEAPTKAGDLLEAFAAGTLARTQIRGTLADLAAGRAAGRR FT DAAEITVFKAVGSALEDLTLAAQVYEARQGDVQAQ" FT misc_feature 195374..196309 FT /note="HMMPfam hit to PF02423, Ornithine FT cyclodeaminase/mu-crystallin family" FT CDS 196366..197526 FT /transl_table=11 FT /locus_tag="BP1506" FT /product="putative exported protein" FT /note="Similar to Deinococcus radiodurans branched-chain FT amino acid ABC transporter, periplasmic amino acid- binding FT protein Dra0263 TR:Q9RYP6 (EMBL:AE001863) (424 aa) fasta FT scores: E(): 1.3e-66, 50.81% id in 370 aa, and to FT Agrobacterium tumefaciens Agr_c_2609p TR:AAK87205 FT (EMBL:AE008067) (387 aa) fasta scores: E(): 1.5e-52, 44.08% FT id in 372 aa. Similar to BP3568 (52.926% identity in 376 aa FT overlap)" FT /db_xref="InterPro:IPR001828" FT /db_xref="UniProtKB/TrEMBL:Q7VY56" FT /protein_id="CAE41795.1" FT /translation="MSTLLARLAVLATALVPAFAAQAEVVIGVDVSTTGPAAAIGIQTN FT NAIRLWPATLGGEPARYVVLDDGTDVSRAVKNMRKLTSEDKVDAIVGPNTTAAALAGLD FT VLAEIKTPMIALAASAVIVEPMSDPKRAWAFKMPQNDSLMASVLVQDMKKKGVKTVAFI FT GFADSYGDSWWKEFSQAAGDDLKIVAQERFQRTDASVVGQVLKVIAAKPEAVLIAGAGT FT PSALPQKTLLERGYAGKVYQTHGIGTLEFLQVGGRDVEGTLFPTGPGVVARELPDSNPV FT KKVAVEFADKYEAQYGANTLTQFAGDAYGAWILLDSAVARALKTGAKPGTPEFRAALRD FT ALENTRDLTVPNGVLNISAENHQGFDERARVMGVVRNGRFSYAGQP" FT misc_feature 196366..196434 FT /note="Signal peptide predicted for BP1506 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.822 between residues 23 and 24" FT CDS 197687..198607 FT /transl_table=11 FT /locus_tag="BP1507" FT /product="putative extracellular solute-binding protein" FT /note="Similar to Desulfitobacterium dehalogenans ABC FT transporter binding protein-like protein AabH TR:Q9APF8 FT (EMBL:AF299117) (269 aa) fasta scores: E(): 7.4e-41, 45.98% FT id in 274 aa, and to Streptomyces coelicolor probable amino FT acid ABC transporter protein, solute-binding component FT Sce20.02 TR:Q9RDC3 (EMBL:AL136058) (309 aa) fasta scores: FT E(): 1e-39, 43.1% id in 290 aa" FT /db_xref="GOA:Q7VY55" FT /db_xref="InterPro:IPR001638" FT /db_xref="UniProtKB/TrEMBL:Q7VY55" FT /protein_id="CAE41796.1" FT /translation="MLMRRFNFVKWGLLMVGAGLLAACSDSDSSDPGAAQQPAAQSAST FT LDAAKAAGKIRIGYANEAPYAYMDSKEARVTGESVEIARVVLKRMGIDEVEGVLTEFGS FT LIPGLQAKRFDIIAAGMYVTPERCQQVAFSDPTYGVGQAFLVQKGNPKNLHSYADVAKN FT GEAKLGVVVGAIEAEYATKQEIPAGQVVVFPDAVSALSGIEAGRADAYAATTLTVNDLM FT HKTSAGDKLEKADPFTDPTVDGKSVRGYGAFAFRKDDQAFADAFNAELKKFVGSDKHRK FT LVEPFGFTAGELPGDVTAAKLCAAQ" FT misc_feature 197687..197773 FT /note="Signal peptide predicted for BP1507 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.996) with cleavage site FT probability 0.225 between residues 29 and 30" FT misc_feature 197726..197758 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 197849..198514 FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3" FT CDS 198620..199261 FT /transl_table=11 FT /locus_tag="BP1508" FT /product="putative inner membrane component of FT binding-protein-dependent transport system" FT /note="Similar to Rhizobium meliloti putative amino acid FT ABC transporter permease protein Smb20429 TR:CAC48815 FT (EMBL:AL603643) (219 aa) fasta scores: E(): 1.9e-33, 52.91% FT id in 206 aa, and to Agrobacterium tumefaciens Agr_l_252p FT TR:AAK88696 (EMBL:AE008210) (221 aa) fasta scores: E(): FT 1.7e-30, 49.75% id in 207 aa" FT /db_xref="GOA:Q7VY54" FT /db_xref="InterPro:IPR010065" FT /db_xref="UniProtKB/TrEMBL:Q7VY54" FT /protein_id="CAE41797.1" FT /translation="MDNTWSLLPPLLDGLAVTLRIAAGAAALAIPLALAAGLARLSASP FT WLRAPAAVYVEVFRGTSALVQLFWFYFVLPMFGMKLPALLVGIVVLGANAGAYGAEVVR FT GAILAVPAGQREAAVALNLTRARTIWRIILPQAVPAMLPPTGNLLIELLKNTALVSLIT FT ITDLTFRGQLLRSETLRTTEIFTLVLLLYFAVALVITGGIRMLERRFKVR" FT misc_feature 198620..198724 FT /note="Signal peptide predicted for BP1508 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.871) with cleavage site FT probability 0.763 between residues 35 and 36" FT misc_feature join(198662..198730,198818..198886,199169..199237) FT /note="3 probable transmembrane helices predicted for FT BP1508 by TMHMM2.0 at aa 15-37, 67-89 and 184-206" FT misc_feature 198935..199147 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT CDS 199258..199929 FT /transl_table=11 FT /locus_tag="BP1509" FT /product="putative inner membrane component of FT binding-protein-dependent transport system" FT /note="Similar to Rhizobium meliloti putative amino acid FT ABC transporter permease protein Smb20430 TR:CAC48816 FT (EMBL:AL603643) (220 aa) fasta scores: E(): 3.2e-42, 55.45% FT id in 211 aa, and to Streptomyces coelicolor probable amino FT acid ABC transporter protein, integral membrane component FT Sce20.04 TR:Q9RDC1 (EMBL:AL136058) (216 aa) fasta scores: FT E(): 2.2e-36, 52.31% id in 216 aa" FT /db_xref="GOA:Q7VY53" FT /db_xref="InterPro:IPR010065" FT /db_xref="UniProtKB/TrEMBL:Q7VY53" FT /protein_id="CAE41798.1" FT /translation="MSPIFDWGFALEILPMLGSALAITVQATLLGMLVAVTLGLALALL FT RRSPFWPVSALTALVIEFVRSTPLLVQMYFLFYVLPVTGWQMSPLTTGILALGLHYAAY FT CAEVYRAGIEAVPRGQHEAATALNLSRWRTAVGVVLPQAIPPVVPALGNYLVAMFKDTP FT LLSAITVVELLQQSKIIGSTTFRYTEPLTLVGVLFLLLSLVAAWGVRRLEARLKLYGGK FT R" FT misc_feature join(199324..199392,199405..199473,199501..199569, FT 199660..199728,199816..199884) FT /note="5 probable transmembrane helices predicted for FT BP1509 by TMHMM2.0 at aa 23-45, 50-72, 82-104, 135-157 and FT 187-209" FT misc_feature 199591..199824 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT CDS 199926..200696 FT /transl_table=11 FT /locus_tag="BP1510" FT /product="putative ATP-binding component of ABC FT transporter" FT /note="Similar to Rhizobium sp probable amino-acid ABC FT transporter ATP-binding protein Y4th SW:Y4TH_RHISN () (257 FT aa) fasta scores: E(): 2e-45, 54.29% id in 256 aa, and to FT Rhizobium meliloti putative amino acid ABC transporter FT ATP-binding protein smb20427 TR:CAC48813 (EMBL:AL603643) FT (261 aa) fasta scores: E(): 7.4e-45, 53.57% id in 252 aa. FT Similar to several B. pertussis CDSs: BP1181, P3828, FT BP1534, BP1855, BP1575, BP1362, P0768, and BP0054." FT /db_xref="GOA:Q7VY52" FT /db_xref="HSSP:1B0U" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VY52" FT /protein_id="CAE41799.1" FT /translation="MSASIRLAKLCKRYGDLDVLRGIDLEIPAGQTVSVIGPSGSGKST FT LLRLLMTLDRPTSGAIEIDGESMWHDAQGREMGPNSAHVRRVRGKIGMVFQHFNLFPHK FT TALGNVIEAPLYVLGLSRDEAVARGREYLDMVGLGDKLDAYPAQLSGGQKQRVGIARAL FT AMCPEVMLFDEVTSALDPELVGGILQILRDLAARRTMTMIIVTHQMKFAERSSDRTLFF FT DEGNIVEDAESAQLFAAPREPRTQQFLQSVIEAA" FT misc_feature 200013..200600 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 200034..200057 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 200370..200414 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT repeat_region 200693..200724 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 200693..201745 FT CDS 200795..201745 FT /transl_table=11 FT /locus_tag="BP1511" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA4" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA4" FT /protein_id="CAE41800.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 201053..201118 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 201176..201709 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(201714..201745) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(201962..202366) FT /transl_table=11 FT /locus_tag="BP1512" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2706 TR:Q9I0D6 (EMBL:AE004698) (131 aa) fasta FT scores: E(): 2.7e-20, 48.06% id in 129 aa, and to Rhizobium FT loti Mll0824 protein TR:Q98LY2 (EMBL:AP002995) (138 aa) FT fasta scores: E(): 1.9e-15, 38.76% id in 129 aa" FT /db_xref="GOA:Q7VY51" FT /db_xref="InterPro:IPR006913" FT /db_xref="UniProtKB/TrEMBL:Q7VY51" FT /protein_id="CAE41801.1" FT /translation="MLNGSCLCGRVAYTVDGPLADVVNCHCAMCRKAHGAAFRTRATVR FT AEHFAFVRGESDITWYSSSPGNYRGFCSACGTPLLSRFDQTPDVYALPLGALDDDPGVK FT AACHVYVAHKAPWHDITDDLPRHPEGRPGH" FT CDS complement(202440..203630) FT /transl_table=11 FT /locus_tag="BP1513" FT /product="formate dehydrogenase" FT /EC_number="1.2.1.2" FT /note="Similar to Pseudomonas sp formate dehydrogenase FT SW:FDH_PSESR (P33160) (400 aa) fasta scores: E(): 2.9e-113, FT 70.95% id in 396 aa, and to Rhizobium meliloti probable FT NAD-dependent formate dehdyrogenase Sma0478 TR:AAK64909 FT (EMBL:AE007218) (401 aa) fasta scores: E(): 1.9e-122, FT 75.56% id in 397 aa" FT /db_xref="GOA:Q7VY50" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VY50" FT /protein_id="CAE41802.1" FT /translation="MAKILCVLYDDPVGGMPATYARDSLPAIARYPGGATLPTPLALDF FT TPGHLLGCVSGELGLRPFLQARGHTLVVTADKDGPGSVFERELPDADVVISQPFWPAYL FT TAARIAKAPRLKLAITAGIGSDHVDLQAAAQHGLTVAEVTYSNSISVSEHVVMMVLALV FT RNYLPSYQCVLDGGWNIADCVARSYDLEGMQVGAGRIGSAVLRRLKPFDVGLHYTDQHR FT LPAATEQELGARYHPDAAALAGACDVISLHCPLHPGTEHLFDAAMLARMKRGAYLINTA FT RGKICDRDAVVQALASGQLAGYAGDVWFPQPAPRDHPWRSMPHHGMTPHISGSSLPAQA FT RYAAGTREILECWLDGRAIRTEYLIVDQGRLAGAGAHAYTPGDTTAGSENAARFHP" FT misc_feature complement(202641..203261) FT /note="HMMPfam hit to PF00389, D-isomer specific FT 2-hydroxyacid dehydrogenase, catalytic domain" FT misc_feature complement(202770..202820) FT /note="ScanRegExp hit to PS00671, D-isomer specific FT 2-hydroxyacid dehydrogenases signature 3." FT CDS complement(203664..203990) FT /transl_table=11 FT /locus_tag="BP1514" FT /product="conserved hypothetical protein" FT /note="Similar to Methylophilus methylotrophus putative FT regulatory protein FmdB SW:FMDB_METME () (112 aa) fasta FT scores: E(): 6.1e-09, 39.82% id in 113 aa, and to FT Caulobacter crescentus hypothetical protein Cc2510 FT TR:Q9A5E0 (EMBL:AE005919) (106 aa) fasta scores: E(): 1.2, FT 34.24% id in 73 aa" FT /db_xref="InterPro:IPR013429" FT /db_xref="UniProtKB/TrEMBL:Q7VY49" FT /protein_id="CAE41803.1" FT /translation="MPLYDYACPQCGPFRAWRALREAGAPLACPQCGEHAPKAVTAPFL FT ADMNPAVRQAHARNEKSAHEPTVASRPAPGHDHGHGHGHAPVPAGLDPGPWVVSPHRSM FT VGHH" FT CDS complement(204013..204528) FT /transl_table=11 FT /locus_tag="BP1515" FT /product="putative transporter protein" FT /note="Similar to Streptococcus salivarius UreI TR:Q55052 FT (EMBL:AF042344) (171 aa) fasta scores: E(): 2e-18, 39.53% FT id in 172 aa, and to Pseudomonas aeruginosa putative FT transporter protein AmiS SW:AMIS_PSEAE () (171 aa) fasta FT scores: E(): 1.8e-30, 51.47% id in 169 aa" FT /db_xref="GOA:Q7VY48" FT /db_xref="InterPro:IPR003211" FT /db_xref="UniProtKB/TrEMBL:Q7VY48" FT /protein_id="CAE41804.1" FT /translation="MLLGLTLLYVGAVLFLNGLWLLEKIGDKEIWIINIFSGALTLLVS FT LRLAFGEDATPLSVRAAALTLLFTFTYIWVALNRYNGADGRGLGWYSLFVALTAVPVAL FT QTLAGATTLWGYWLGLNWVAWAVLWFMFFLLLVKKRPIARATGILTVLEGIVTGWIPGF FT LLLNGMLA" FT misc_feature complement(join(204019..204084,204121..204186, FT 204202..204267,204289..204345,204376..204441, FT 204463..204513)) FT /note="6 probable transmembrane helices predicted for FT BP1515 by TMHMM2.0 at aa 5-22, 29-51, 61-80, 87-109, FT 114-136 and 148-170" FT misc_feature complement(204019..204525) FT /note="HMMPfam hit to PF02293, AmiS/UreI family FT transporter" FT CDS complement(204587..205813) FT /transl_table=11 FT /gene="fmdA" FT /locus_tag="BP1516" FT /product="formamidase" FT /EC_number="3.5.1.49" FT /note="Similar to Methylophilus methylotrophus formamidase FT FmdA SW:FMDA_METME (Q50228) (407 aa) fasta scores: E(): FT 2e-125, 71.53% id in 397 aa, and to Emericella nidulans FT formamidase FmdS TR:Q9C453 (EMBL:AF274009) (411 aa) fasta FT scores: E(): 2e-91, 53.56% id in 407 aa" FT /db_xref="GOA:Q7VY47" FT /db_xref="InterPro:IPR004304" FT /db_xref="UniProtKB/TrEMBL:Q7VY47" FT /protein_id="CAE41805.1" FT /translation="MAQTAFHVEFNKAPEDQATKTHNRWHPDIPMVEWFNPGDEFRVEC FT YDWTGGQISNDDSANDVRDVDLTRVHYLSGPFGVKGAEPGDLLVVDLLDVGALPESAWG FT FTGIFARENGGGFLCEHFPDARKACWDFHGIYTTSRHVPNVRWPGIIHPGLIGCLPDRA FT LLERANKREAALLATDPNRVPPLLAPSYADTALMGQMSGEAARKAGAEAWRTVPPREHG FT GNCDIKNLSRGSRVYFPVYVKGGGLSMGDIHWSQGDGEITFCGAIEMAGFLDIRVDLIK FT DGINKYGIVNPIFKPSPIEPHFAEYLVFEGISVDEHTGEQYYLDAHVAYRRACLNAIEY FT LKKFGYTSEQAYIILGTAPVEGRISGIVDIPNACCTLAIPTEIFDFDIRPNAAGPSAKV FT GKAKVAVTS" FT CDS complement(205991..207121) FT /transl_table=11 FT /locus_tag="BP1517" FT /product="putative LuxR-family transcriptional regulator" FT /note="Similar to Rhizobium loti Mll1934 protein TR:Q98JH9 FT (EMBL:AP002998) (390 aa) fasta scores: E(): 5.7e-09, 23.54% FT id in 361 aa, and to Agrobacterium tumefaciens Agr_c_3081p FT TR:AAK87447 (EMBL:AE008089) (365 aa) fasta scores: E(): FT 3e-07, 24.28% id in 350 aa" FT /db_xref="GOA:Q7VY46" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VY46" FT /protein_id="CAE41806.1" FT /translation="MDAKPAAAAAAQTEDRLLHVLYGTLNDDTQWQQVLAALCRRFATR FT AAALAHYDFDAGAGRILYQAPADGPLQAIYDQGRPLNPWFLSKAPYLPGRILDSPELIA FT PEDFLQTDFYREILRPHGLFHRLCGVLARQRNHVWYLVLHRRKEQMPFDSADRARLRTL FT MPHLMTVFEVRTRCAAQVRLAGLLARIVQAYLPPVLVLDRDGAVLHGEIAADALPAQLR FT LVDGRLATRDAALQKPLRDRIRRMAEAAQAGKPGRASLALDEADGAAPIQLTLCALGPD FT TNAQGGQAGALVGLLISDPGQDARQAMRRFADHFALSPAEEKVSALILQGMTPARVARS FT LHISEHTVRSHLKQIFRKTNTHRQAELMSLRERADY" FT misc_feature complement(205994..206182) FT /note="HMMPfam hit to PF00196, Bacterial regulatory FT proteins, luxR family" FT misc_feature complement(206063..206128) FT /note="Predicted helix-turn-helix motif with score 1725 FT (+5.06 SD) at aa 371-392, sequence MTPARVARSLHISEHTVRSHLK" FT CDS 207377..207937 FT /transl_table=11 FT /locus_tag="BP1518" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4875 TR:Q9HUT8 (EMBL:AE004901) (98 aa) fasta FT scores: E(): 1.9e-18, 61.22% id in 98 aa, and to FT Deinococcus radiodurans hypothetical 12.2 kDa protein FT Dr0134 TR:Q9RY18 (EMBL:AE001876) (114 aa) fasta scores: FT E(): 3.5e-16, 47.32% id in 112 aa" FT /db_xref="GOA:Q7VY45" FT /db_xref="InterPro:IPR005302" FT /db_xref="UniProtKB/TrEMBL:Q7VY45" FT /protein_id="CAE41807.1" FT /translation="MCSSPGHTFSKPVREAITLVAGLGVAGDAHQGATVRHRSRVRADP FT GQPNLRQVHLIHGELHDALQQAGFNVAEGTLGENITTRGIDLLDLPRDSLLYLGGQAIV FT RITGLRNPCAQLDRYQRGLMAAVLERDAAGGLVRKAGIMAVVEAGGDVRAGDPIEVVLP FT PPPHHRLDCVYGPRNRDRRAVPR" FT CDS 208074..209138 FT /transl_table=11 FT /gene="fba" FT /gene_synonym="fda" FT /gene_synonym="cbbA" FT /locus_tag="BP1519" FT /product="fructose-bisphosphate aldolase" FT /EC_number="4.1.2.13" FT /note="Similar to Xanthobacter flavus fructose-bisphosphate FT aldolase CbbA SW:ALF_XANFL (Q56815) (354 aa) fasta scores: FT E(): 4.4e-96, 72.59% id in 354 aa, and to Pseudomonas FT aeruginosa fructose-bisphosphate aldolase FbA or Pa0555 FT SW:ALF_PSEAE (Q9I5Y1) (354 aa) fasta scores: E(): 4.4e-96, FT 73.63% id in 349 aa" FT /db_xref="GOA:Q7VY44" FT /db_xref="HSSP:1GVF" FT /db_xref="InterPro:IPR006412" FT /db_xref="UniProtKB/TrEMBL:Q7VY44" FT /protein_id="CAE41808.1" FT /translation="MALVSMRQLLDHAAEHGYGIPAFNVNNLEQVQAIMEAAAETDSPV FT IMQASAGARKYAGEGFLKYLIQAAVESYPHIPVVMHQDHGQSPAVCQGAIDLGFSSVMM FT DGSLKEDGKTIADYDYNVDVTKKVVDMAHKLGVTVEGELGCLGSLETMQGDKEDGHGAD FT GKLTMEQLLTDPEQAADFVRRTQLDALAIAIGTSHGAYKFTRKPTGDILSIARIKEIHA FT RLPNTHLVMHGSSSVPQDLLAEIREFGGDMKETYGVPVEEIQEAIKFGVRKINIDTDIR FT LAMTGAIRRFFAENPSKFDPREYLKPARAAAKAICVQRYTQFGTAGNASKIKPLPLADM FT AQQYAAGKLAQVVQ" FT misc_feature 208077..209060 FT /note="HMMPfam hit to PF01116, Fructose-bisphosphate FT aldolase class-II" FT misc_feature 208290..208328 FT /note="ScanRegExp hit to PS00602, Fructose-bisphosphate FT aldolase class-II signature 1. Confirmed by InterPro eMOTIF FT pattern match." FT misc_feature 208488..208523 FT /note="ScanRegExp hit to PS00806, Fructose-bisphosphate FT aldolase class-II signature 2. Confirmed by InterPro eMOTIF FT pattern match." FT CDS complement(209223..209669) FT /transl_table=11 FT /locus_tag="BP1520" FT /product="conserved hypothetical protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc3092 TR:Q9A3V9 (EMBL:AE005972) (134 aa) fasta FT scores: E(): 4.2e-22, 46.97% id in 132 aa, and to Rhizobium FT loti Mlr0112 protein TR:Q98NJ4 (EMBL:AP002994) (132 aa) FT fasta scores: E(): 1.4e-12, 34.09% id in 132 aa" FT /db_xref="GOA:Q7VY43" FT /db_xref="InterPro:IPR006913" FT /db_xref="UniProtKB/TrEMBL:Q7VY43" FT /protein_id="CAE41809.1" FT /translation="MSPAPAAGTPADIHTYTGGCLCQAVRFRATGPLLAAATCHCRECQ FT YLSGGAPAHALLLPAGALRLERGAPREYHYRSAAGRRVMRSFCADCGTPLFGHTEDAGY FT TVVRAGALDEPERFANQLTVWTASAPPWHAIDTAHPHFAGNAPS" FT CDS 209894..210775 FT /transl_table=11 FT /gene="purC" FT /locus_tag="BP1521" FT /product="phosphoribosylaminoimidazole-succinocarboxamide FT synthase" FT /EC_number="6.3.2.6" FT /note="Similar to Corynebacterium ammoniagenes FT 5'-phosphoribosyl-4-N-succinocarboxamide-5-amino imidazole FT synthetase PurC TR:Q9RHX2 (EMBL:AB003161) (295 aa) fasta FT scores: E(): 8.8e-55, 57.34% id in 279 aa, and to Neisseria FT meningitidis FT phosphoribosylaminoimidazole-succinocarboxamide synthase FT Nmb0757 TR:Q9K063 (EMBL:AE002430) (287 aa) fasta scores: FT E(): 1.6e-71, 63.37% id in 273 aa" FT /db_xref="GOA:Q7VY42" FT /db_xref="InterPro:IPR018236" FT /db_xref="UniProtKB/Swiss-Prot:Q7VY42" FT /protein_id="CAE41810.1" FT /translation="MTSALHESSIKSLPLLGRGKVRDMYAVGDDKLLIVASDRISAFDV FT ILDDPIPGKGQVLTELTDFWLRKLAHILPNHSTGIQPEDVVAPDEVDQVRGRAVVVKRL FT KPILVEAVARGYLIGSGWKDYQASGSVCGIALPAGLQQASQLPEPIFTPAAKAEFGMHD FT ENVDFAHVVKEVGQEMAERIRDVTLRLYGEAARFAATKGIIIADTKFEFGLDDNGTLHL FT MDEVLTPDSSRFWPADGYRVGISPPSFDKQFVRDWLETQPWDKTPPAPRLPRDVLEKTA FT AKYREALDRLLA" FT misc_feature 209927..210721 FT /note="HMMPfam hit to PF01259, SAICAR synthetase" FT misc_feature 210506..210532 FT /note="ScanRegExp hit to PS01058, SAICAR synthetase FT signature 2. Confirmed by InterPro eMOTIF pattern match." FT CDS 210908..211081 FT /transl_table=11 FT /locus_tag="BP1522" FT /product="conserved hypothetical protein" FT /note="Similar to Alcaligenes eutrophus hypothetical 10.9 FT kDa protein TR:Q9ZAL5 (EMBL:Y10831) (98 aa) fasta scores: FT E(): 1.1e-16, 71.93% id in 57 aa, and to Xylella fastidiosa FT hypothetical protein Xf2490 TR:Q9PAL4 (EMBL:AE004057) (100 FT aa) fasta scores: E(): 6.4e-12, 67.24% id in 58 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VY41" FT /protein_id="CAE41811.1" FT /translation="MVEIVLALTPRDFHKSMTTHADHRIWQDVYCPVTAMGAVYLKLTV FT LDGVPIVSFKEL" FT CDS 211084..211485 FT /transl_table=11 FT /locus_tag="BP1523" FT /product="putative DNA-binding protein" FT /note="Similar to Alcaligenes eutrophus hypothetical 14.2 FT kDa protein TR:Q9ZAL4 (EMBL:Y10831) (133 aa) fasta scores: FT E(): 3.3e-41, 77.27% id in 132 aa, and to Xylella FT fastidiosa hypothetical protein Xf2491 TR:Q9PAL3 FT (EMBL:AE004057) (133 aa) fasta scores: E(): 1.9e-34, 65.15% FT id in 132 aa" FT /db_xref="GOA:Q7VY40" FT /db_xref="InterPro:IPR001387" FT /db_xref="UniProtKB/TrEMBL:Q7VY40" FT /protein_id="CAE41812.1" FT /translation="MKCPVCGAAALARDTRDVPYSYKGETITIAAVTGDWCPACGENVL FT DGAESARVSEAMLAFNRLVNARRVDPGFIVRVRRKLGLDQREAAALFGGGTNAFSRYEN FT GKTRPPLALVKLLRLLDRHPELLEEVRAD" FT misc_feature 211303..211464 FT /note="HMMPfam hit to PF01381, Helix-turn-helix" FT misc_feature 211330..211395 FT /note="Predicted helix-turn-helix motif with score 1148 FT (+3.10 SD) at aa 85-106, sequence LDQREAAALFGGGTNAFSRYEN" FT CDS 211505..211741 FT /transl_table=11 FT /locus_tag="BP1524" FT /product="putative membrane protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VY39" FT /protein_id="CAE41813.1" FT /translation="MNYFVLLRYTRPSSHKGKRKGSDEMLMMLPFLSGALAVWFGILGK FT RRPCFALWLVTLAVFAVGAHRYMTGPVPLPLAL" FT misc_feature join(211580..211633,211652..211711) FT /note="2 probable transmembrane helices predicted for FT BP1524 by TMHMM2.0 at aa 26-43 and 50-69" FT CDS 211749..212228 FT /transl_table=11 FT /locus_tag="BP1525" FT /product="putative membrane protein" FT /note="Similar to Agrobacterium tumefaciens Agr_l_2587p FT TR:AAK89860 (EMBL:AE008329) (171 aa) fasta scores: E(): FT 0.96, 29.03% id in 155 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VY38" FT /protein_id="CAE41814.1" FT /translation="MIFLRNPGRGSRIVNTLVLLAVSLLLLSALAWQWLDAEAPCPLCL FT LQRAALVLIGVGLLLNVRMGPSPLHYAMVLAPALGGLTAAGWQLLSPDAGAAAPPWQGW FT AFLLFGAMLVYCTLMLAADRKWGDNALKKPVALPGALVMGLFLVAVLANAAGTAL" FT misc_feature 211749..211841 FT /note="Signal peptide predicted for BP1525 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.975) with cleavage site FT probability 0.688 between residues 31 and 32" FT misc_feature join(211785..211853,211881..211934,211953..212021, FT 212049..212114,212151..212219) FT /note="5 probable transmembrane helices predicted for FT BP1525 by TMHMM2.0 at aa 13-35, 45-62, 69-91, 101-122 and FT 135-157" FT CDS 212414..212893 FT /transl_table=11 FT /gene="purE" FT /locus_tag="BP1526" FT /product="phosphoribosylaminoimidazole carboxylase FT catalytic subunit" FT /EC_number="4.1.1.21" FT /note="Similar to Escherichia coli FT phosphoribosylaminoimidazole carboxylase catalytic subunit FT PurE or B0523 or Z0678 or Ecs0585 SW:PUR6_ECOLI (P09028) FT (168 aa) fasta scores: E(): 2e-25, 56.08% id in 148 aa, and FT to Neisseria meningitidis phosphoribosylaminoimidazole FT carboxylase catalytic subunit PurE or nma1651 TR:Q9JTS6 FT (EMBL:AL162756) (161 aa) fasta scores: E(): 5e-35, 67.09% FT id in 155 aa" FT /db_xref="GOA:Q7VY37" FT /db_xref="HSSP:1D7A" FT /db_xref="InterPro:IPR000031" FT /db_xref="UniProtKB/TrEMBL:Q7VY37" FT /protein_id="CAE41815.1" FT /translation="MGVIMGSSSDWEVMKHAVAMLQDFGVAHEARVISAHRMPQDMAEY FT GAAARARGLRAIIAGAGGAAHLPGMMAALTEVPVFGVPVPSRYLRGEDSLLSIVQMPKG FT VPVATFAIGEAGAANAALHAIATLATTDDALHARLVAFRARQTDAARAMKVPPEA" FT misc_feature 212417..212860 FT /note="HMMPfam hit to PF00731, AIR carboxylase" FT CDS 212896..214086 FT /transl_table=11 FT /gene="purK" FT /locus_tag="BP1527" FT /product="phosphoribosylaminoimidazole carboxylase ATPase FT subunit" FT /EC_number="4.1.1.21" FT /note="Similar to Bacillus subtilis FT phosphoribosylaminoimidazole carboxylase ATPase subunit FT PurK SW:PURK_BACSU (P12045) (379 aa) fasta scores: E(): FT 1.8e-43, 41.93% id in 372 aa, and to Neisseria gonorrhoeae FT putative phosphoribosylaminoimidazole carboxylase PurK FT TR:Q9WVW4 (EMBL:AJ242839) (378 aa) fasta scores: E(): FT 4.4e-66, 50.13% id in 383 aa" FT /db_xref="GOA:Q7VY36" FT /db_xref="HSSP:1B6R" FT /db_xref="InterPro:IPR005875" FT /db_xref="UniProtKB/TrEMBL:Q7VY36" FT /protein_id="CAE41816.1" FT /translation="MTQSSTFDPIASGDWLGLLGGGQLGRMFCHAAQSLGYKVAVLDPA FT DECPAGMVADLHIQAAYDDADGLARLAGRCRAVTTEFENVPADSLRALAARCRVSPAAD FT AVAVVQDRIAEKTFIAGQGIEVAPHAAICARDDLLAAPQALFPGILKVARLGYDGKGQA FT RIASREEALAAFDEFGGVPCVLEALLPLDYEISVVIARGFDGASMVFPIARNVHRDGIL FT AVSSVTPGAADASHAARQVQATQAAQAIAQGLGYHGVLCVEFFVLGDGRLVVNEIAPRP FT HNSGHYTIDACVTSQFEQQARVMAGLPLGSADLLAPAVMLNILGDVWFEPGAHAPREPD FT WSAALAVPSAKLHLYGKREARRGRKMGHVTIVAATPEQARDDAARVACALGMAAPL" FT misc_feature 213019..213495 FT /note="HMMPfam hit to PF02222, ATP-grasp domain" FT CDS 214091..215143 FT /transl_table=11 FT /locus_tag="BP1528" FT /product="conserved hypothetical protein" FT /note="Similar to Thermomonospora fusca hypothetical 34.2 FT kDa protein TR:Q9XCD2 (EMBL:AF144563) (335 aa) fasta FT scores: E(): 4.6e-26, 46.47% id in 340 aa, and to Bacillus FT halodurans Bh3771 protein TR:Q9K6F8 (EMBL:AP001519) (348 FT aa) fasta scores: E(): 1e-22, 38.71% id in 341 aa" FT /db_xref="HSSP:1JCU" FT /db_xref="InterPro:IPR010923" FT /db_xref="UniProtKB/TrEMBL:Q7VY35" FT /protein_id="CAE41817.1" FT /translation="MIPAAMNAADPAVAHAAACLLAGELAAFPTETVYGLGADAENPQA FT VARIYAAKGRPSNHPVIVHIAPEGDVDYWASDVPAAARQLIQAFWPGPLTLILKRAPHI FT GAAVSGGQDSIGIRCPSHPVAQALLRAFAAGKPNGQGGVAAPSANTFGHVSPTRAEHVR FT AEFPREVAAGMPVLDGGDAEVGIESTIIDLSRLDQGVGPVLLRPGHISAAQVAAVLGMP FT VARPDAAAPRASGTLKAHYAPRTPLELLDAAQLPRALAAAPAGVRQAVVALAPAPAGLS FT ADVHWRMAPAGPARYAQALYALLRELDRQGYARILVEQPPRSGDWDAVNDRIGRAAAAF FT SLDTTDLPGT" FT misc_feature 214142..214714 FT /note="HMMPfam hit to PF01300, SUA5/yciO/yrdC family" FT misc_feature 214163..214201 FT /note="ScanRegExp hit to PS01147, SUA5/yciO/yrdC family FT signature." FT CDS 215280..216302 FT /transl_table=11 FT /locus_tag="BP1529" FT /product="putative extracellular solute-binding protein" FT /note="Similar to Escherichia coli putative amino-acid ABC FT transporter binding protein YhdW precursor YhdW or B3268 FT SW:YHDW_ECOLI (P45766) (341 aa) fasta scores: E(): 2.5e-70, FT 54.22% id in 343 aa, and to Rhizobium meliloti probable FT general L-amino acid-binding periplasmic ABC transporter FT protein TR:CAC46057 (EMBL:AL591787) (341 aa) fasta scores: FT E(): 3.4e-70, 53.93% id in 343 aa" FT /db_xref="GOA:Q7VY34" FT /db_xref="InterPro:IPR001638" FT /db_xref="UniProtKB/TrEMBL:Q7VY34" FT /protein_id="CAE41818.1" FT /translation="MKRHIAMAAGALALALGAQAAHAGPTLDAVKKKGFVQCGLTDGVA FT GFSATNSKGEWEGMDVDICRAVAAAVFGDAGKFKGTALSTQQRFTALQSGEVDVLLRTV FT TLTQTRDTSLGLAAVAASFYDGQGVLVRKALGVKSAKELDEATICVQPGTTTELNLADW FT FRANGIKFTPVVIDKVTEVVRAFESGRCDAFTDDASQLAAVRATQVAKPDDFEILPERF FT SKEPLGPMVRQGDENWLGIVRWTLFALMEAEEYGITQQNVDEMLKSKNPNVLRILGVTP FT GAGKNMGLDEKWAYNAIKAVGNYSQIFERNVGKDSRLGLQRGVNALWSQGGAMYPWPIR FT " FT misc_feature 215280..215348 FT /note="Signal peptide predicted for BP1529 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 23 and 24" FT misc_feature 215385..216221 FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3" FT CDS 216394..217230 FT /transl_table=11 FT /locus_tag="BP1530" FT /product="putative transcriptional regulator" FT /note="Similar to Pseudomonas putida PcaR protein TR:Q9R9T0 FT (EMBL:AJ252090) (291 aa) fasta scores: E(): 6.5e-21, 31.66% FT id in 240 aa, and to Pseudomonas aeruginosa transcriptional FT regulator PcaR or Pa0155 TR:Q9I6X7 (EMBL:AE004453) (279 aa) FT fasta scores: E(): 7.9e-22, 32.66% id in 248 aa" FT /db_xref="GOA:Q7VY33" FT /db_xref="InterPro:IPR005471" FT /db_xref="UniProtKB/TrEMBL:Q7VY33" FT /protein_id="CAE41819.1" FT /translation="MTTVAPEDSPLFVAALARGLTLLAAFSEGRPAMTLPELAEATGLT FT KSAAQRFAHTLWTLGYLRKNPDSKKFSLSPQSLQLGMQYAQTSPLVLGGNPFLHSLNRT FT SQETCSLAEPDGLDMVYVARFATHKQMFVHMPVGMRIPMYCAAAGRAVLARLEPDRARR FT LLQQSPRAARTATTLTDLDALMAELAFTREHGYARSNGEYYPGDITISAAVLDNAGTPA FT GSVNISVPSSRWSFEEAQAVFGPQVLETAHAISASRTLGVLPPFYRMAPPSALNSD" FT misc_feature 216490..216555 FT /note="Predicted helix-turn-helix motif with score 1223 FT (+3.35 SD) at aa 33-54, sequence MTLPELAEATGLTKSAAQRFAH" FT misc_feature 216604..217164 FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator" FT CDS 217423..218328 FT /transl_table=11 FT /locus_tag="BP1531" FT /product="putative arginase" FT /note="Similar to Pseudomonas aeruginosa agmatinase SpeB1 FT or Pa0288 TR:Q9I6K2 (EMBL:AE004466) (318 aa) fasta scores: FT E(): 5.2e-33, 39.8% id in 304 aa, and to Streptomyces FT coelicolor agmatinase SpeB TR:Q9L083 (EMBL:AL163641) (302 FT aa) fasta scores: E(): 3.7e-32, 40.92% id in 281 aa" FT /db_xref="GOA:Q7VY32" FT /db_xref="HSSP:1GQ6" FT /db_xref="InterPro:IPR006035" FT /db_xref="UniProtKB/TrEMBL:Q7VY32" FT /protein_id="CAE41820.1" FT /translation="MGVPARRPAGEAALACVLGIPFDCGTHPFRVGARQGPDAIREQSR FT LLRPYDLARRAGVDNPVEFLRLLDLGNVACVPGDPQASYPAIEQAVAQVLQAGAIPITM FT GGDGAVTLPQLRAVARRWPGVAVLHFDSHTDTYPIAGYNTATTFTRAAEEGLIDLSHSF FT HVGTRGNSFMGGVIEYGREVGYTVIPYDDFDRDQAGTLARLRGQLGDRPVYLCFDMDIF FT DPSCAPGVCTPEWGGLSPKEGLNLLRALSGLNFVAFDVNTVSPPQDVGGATAFLAASVM FT QEFCALAAAAVQAYPQGRPD" FT misc_feature 217471..217563 FT /note="HMMPfam hit to PF00491, Arginase family" FT misc_feature 217681..218217 FT /note="HMMPfam hit to PF00491, Arginase family" FT misc_feature 217801..217827 FT /note="ScanRegExp hit to PS00148, Arginase family signature FT 2." FT CDS 218355..219146 FT /transl_table=11 FT /locus_tag="BP1532" FT /product="putative amino acid-binding periplasmic protein" FT /note="Similar to Escherichia coli cystine-binding FT periplasmic protein precursor FliY or B1920 SW:FLIY_ECOLI FT (P39174) (266 aa) fasta scores: E(): 3.8e-16, 30.38% id in FT 260 aa, and to Salmonella typhimurium FliY TR:Q9ZNM2 FT (EMBL:AB010947) (266 aa) fasta scores: E(): 1.9e-16, 31.03% FT id in 261 aa" FT /db_xref="GOA:Q7VY31" FT /db_xref="HSSP:1FTK" FT /db_xref="InterPro:IPR001638" FT /db_xref="UniProtKB/TrEMBL:Q7VY31" FT /protein_id="CAE41821.1" FT /translation="MKIKAALGILATVGMLAHAGSAAARTLDEVRAAKSANVVTTASAP FT PHGFKNPASNQLEGIMVDVGAAVAKHLGVAMNLKDVPFSGLIPTLTSGRADVMSAPLFV FT TPERAKVIDFSAPVYEWGEGLVLREQNPDDIKRFEDLQGRRIGVLVDSVQFNMIKDMPD FT TKVSTYQDYSTLLADVRAGRIELGIIDPPSIIYQIRTKKIPGVKLATQYQPQKKWHVGL FT AVQKDNKALLDAVNVALAEMKRNGELAEIGRKWGVADLISK" FT misc_feature 218355..218426 FT /note="Signal peptide predicted for BP1532 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.549 between residues 24 and 25" FT misc_feature 218460..219128 FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3" FT CDS 219169..219861 FT /transl_table=11 FT /locus_tag="BP1533" FT /product="putative inner membrane component of FT binding-protein-dependent transport system" FT /note="Similar to Thermotoga maritima amino acid ABC FT transporter, permease protein Tm0592 TR:Q9WZ61 FT (EMBL:AE001734) (216 aa) fasta scores: E(): 1e-28, 42.57% FT id in 202 aa, and to Clostridium acetobutylicum amino acid FT ABC transporter, permease component Cac3619 TR:Q97D61 FT (EMBL:AE007858) (217 aa) fasta scores: E(): 1.4e-27, 38.42% FT id in 216 aa" FT /db_xref="GOA:Q7VY30" FT /db_xref="InterPro:IPR010065" FT /db_xref="UniProtKB/TrEMBL:Q7VY30" FT /protein_id="CAE41822.1" FT /translation="MNLETLRMYLTPLAEGTMWMLALFFCSAVLAVALGLLVCLCRLSK FT SRVLSRGARLYIDIIRGTPLLLQLFYIYYGMPELGVVINAFVAGVLGLTLNFGAYLAEL FT FRSGIQSVDSGQYEAARALGLNKVDRLRRVVLPQAVRTVFPALGNYALVLIKETSLVAV FT ISVYELMRAGEMLAGATFQALTVYTMVGAIYFAMCSVLAHLFRRSEKRLTVPGYWSGAG FT ENHDISKA" FT misc_feature 219169..219261 FT /note="Signal peptide predicted for BP1533 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.844) with cleavage site FT probability 0.699 between residues 31 and 32" FT misc_feature join(219220..219288,219322..219390,219403..219471, FT 219604..219672,219715..219783) FT /note="5 probable transmembrane helices predicted for FT BP1533 by TMHMM2.0 at aa 18-40, 52-74, 79-101, 146-168 and FT 183-205" FT misc_feature 219490..219723 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature 219493..219579 FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign. Confirmed by FT InterPro eMOTIF pattern match." FT CDS 219883..220635 FT /transl_table=11 FT /locus_tag="BP1534" FT /product="putative ATP-binding component of ABC FT transporter" FT /note="Similar to Escherichia coli hypothetical amino-acid FT ABC transporter ATP-binding protein YhdZ YhdZ or B3271 FT SW:YHDZ_ECOLI (P45769) (252 aa) fasta scores: E(): 1.5e-58, FT 66.93% id in 245 aa, and to Pseudomonas marginalis FT pvalfalfae. hypothetical 28.9 kDa protein TR:O68330 FT (EMBL:AF033673) (254 aa) fasta scores: E(): 5.2e-59, 67.48% FT id in 243 aa. Similar to several B. pertussis CDSs: BP1181, FT P3828, BP0054, BP1855, BP1575, BP1362, P0768, and BP1510." FT /db_xref="GOA:Q7VY29" FT /db_xref="HSSP:1B0U" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VY29" FT /protein_id="CAE41823.1" FT /translation="MDACNQPAPVITLRGVSKWYGDFQVLRDLDLDVYQGERVILCGPS FT ESGKSTTIRLLNRLEEHEKGEIVVNGITLDGELRNIERIRADVGMVFQHFNLFPHLTVL FT ENCTLAPMRVKGLDEGEAARRAMQFLERVRIAQLADKYPGQLSGGQKQRVAIARALCMQ FT PRIMLFDEPTSALDPEMVKEVLDTMVELARDGMTMICVTHEMGFAREVGDRVVFMDGGS FT IVESDTPERFFSAPRSSRAQAFLGQILG" FT variation 219883..219885 FT /note="ATA in pertussis; ATG in parapertussis and FT bronchiseptica" FT misc_feature 219988..220545 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 220009..220032 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 220318..220362 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 220764..222323 FT /transl_table=11 FT /locus_tag="BP1535" FT /product="putative thiamine-pyrophosphate-requiring enzyme" FT /note="Similar to Rhizobium loti acetolactate synthase I FT Mll3567 TR:Q98FY4 (EMBL:AP003002) (517 aa) fasta scores: FT E(): 3.9e-108, 59.38% id in 522 aa, and to Caulobacter FT crescentus thiamine-pyrophosphate-requiring enzyme Cc0393 FT TR:Q9AB41 (EMBL:AE005712) (512 aa) fasta scores: E(): FT 2.7e-86, 51.34% id in 520 aa" FT /db_xref="GOA:Q7VY28" FT /db_xref="HSSP:1JSC" FT /db_xref="InterPro:IPR011766" FT /db_xref="UniProtKB/TrEMBL:Q7VY28" FT /protein_id="CAE41824.1" FT /translation="MNGADSLCDTLLANDIDVCFANPGTSEMHFVAALDRKPRMRCVLG FT LFEGVVTGAADGYARMADKPAATLLHLGPGLGNGLANLHNAKRARTPMVNVVGDHATYH FT VQYDAPLTSDVEAVAQPMSHWVGRIRDAASVAAQTSEAIQVARQEPGNVSTLILPADAA FT WTDLPDDTPAPQPVRQAPQAQVDAQAIRAAAQAIRSGQATTLLLGGAALRGRALAAAGR FT IAHATGVRLAAETSSRRIERGANRPPVVRLPYPVDLAVAFLKDVRHLVLVGSRSPVAFF FT AYPGKPSLLAPQECDQIVLAEPEQDLHHALEWLADELGIPADAPQTRPAALTEAVPAEG FT RLTSAAVNRVAAALLPDNAIVCDESITQGREFGIYSVHSAPHDWLQLTGGAIGIGLPLA FT TGAAVACPDRKVVLLQADGSGMYTVQALWTQARERLDCLTIIYANRTYATLHGEMKNVG FT VIQPGENAKRMLDLVDPHIDWVQVSQGLGVEAVRVDTVEGFTQAMRAALARKGPFLIEA FT VI" FT misc_feature 220794..221447 FT /note="HMMPfam hit to PF00205, Thiamine pyrophosphate FT enzyme, central domain" FT misc_feature 221931..222314 FT /note="HMMPfam hit to PF00205, Thiamine pyrophosphate FT enzyme, central domain" FT CDS 222457..222900 FT /transl_table=11 FT /locus_tag="BP1536" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti Mlr2698 protein TR:Q98HV2 FT (EMBL:AP003000) (156 aa) fasta scores: E(): 2.3e-18, 42.75% FT id in 145 aa, and to Agrobacterium tumefaciens Agr_c_4066p FT TR:AAK87976 (EMBL:AE008139) (169 aa) fasta scores: E(): FT 3.9e-18, 40.97% id in 144 aa" FT /db_xref="GOA:Q7VY27" FT /db_xref="InterPro:IPR002539" FT /db_xref="UniProtKB/TrEMBL:Q7VY27" FT /protein_id="CAE41825.1" FT /translation="MKFADLRAGMVITGGPLQVTEAEILEFARKFDPQWFHTDVQRAAE FT GRWGGLIASGWHTCALAMRMAVDAILHDSESFGSPGLGEVSWRVPVRPGDTLTLHARVQ FT GARVSASRNDLGIVNWAWVVDNQHGETVLELDATSLFDLSGDS" FT misc_feature 222460..222834 FT /note="HMMPfam hit to PF01575, MaoC like domain" FT CDS complement(223038..224231) FT /transl_table=11 FT /gene="gcdH" FT /locus_tag="BP1537" FT /product="glutaryl-CoA dehydrogenase" FT /EC_number="1.3.99.7" FT /note="Similar to Mus musculus glutaryl-CoA dehydrogenase, FT mitochondrial precursor GcdH SW:GCDH_MOUSE (Q60759) (438 FT aa) fasta scores: E(): 3.4e-105, 65.99% id in 397 aa, and FT to Pseudomonas aeruginosa glutaryl-CoA dehydrogenase GcdH FT or Pa0447 TR:Q9I671 (EMBL:AE004482) (393 aa) fasta scores: FT E(): 1.1e-138, 84.38% id in 397 aa" FT /db_xref="GOA:Q7VY26" FT /db_xref="HSSP:1BUC" FT /db_xref="InterPro:IPR006092" FT /db_xref="UniProtKB/TrEMBL:Q7VY26" FT /protein_id="CAE41826.1" FT /translation="MSSTPSFHWQDPLLLDQQLTEEERMVRDAAVAYSQDKLAPRVLEA FT FRHEKTDPAIFAEMGELGLLGATIPTEYGGAGLNYVCYGLIAREVERVDSGYRSMMSVQ FT SSLVMVPINEFGSEAQKRKYLPKLAAGEWIGCFGLTEPNHGSDPGGMETRATKTPDGYK FT LTGNKMWITNSPIADVFVVWAKCVGGDFDGKIRGFILEKGMKGLSAPAIHGKVGLRASI FT TGEIVMDEVEVSEEQMMPGVSGLKGPFTCLNSARYGIAWGALGAAEACWHTARQYTMDR FT KQFGRPLAANQLIQKKLADMQTEITLGLQGCLRLGRMKDEGTAAVEITSIMKRNSCGKA FT LDIARLARDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDVHALILGRAQTGLQAFY" FT misc_feature complement(223068..224177) FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT misc_feature complement(223128..223187) FT /note="ScanRegExp hit to PS00073, Acyl-CoA dehydrogenases FT signature 2." FT CDS complement(224311..226005) FT /transl_table=11 FT /gene="ilvG" FT /locus_tag="BP1538" FT /product="putative acetolactate synthase large subunit" FT /EC_number="2.2.1.6" FT /note="Similar to Escherichia coli acetolactate synthase FT isozyme II large subunit IlvG or B3767 SW:ILVG_ECOLI FT (P00892) (548 aa) fasta scores: E(): 1.6e-49, 32.53% id in FT 544 aa, and to Rhizobium meliloti putative acetolactate FT synthase isozyme II large subunit protein TR:CAC46784 FT (EMBL:AL591789) (548 aa) fasta scores: E(): 6.4e-139, FT 62.63% id in 546 aa" FT /db_xref="GOA:Q7VY25" FT /db_xref="HSSP:1OZH" FT /db_xref="InterPro:IPR012000" FT /db_xref="UniProtKB/TrEMBL:Q7VY25" FT /protein_id="CAE41827.1" FT /translation="MTTANHSTPASRLGGHILVDQLAAHGVKHVFCVPGESYLAVLDGL FT HDASIDVTVCRQEGGAAMMADAHGKLTGEPGICMVTRGPGASNALAGVHIAKQDSTPMI FT LFVGQIERGMREREAFQEMDYRAVFGTQAKWVTEIDQVERIPELISRAFHVATSGRPGP FT VVIALPEDVLVETASVPDAPRYEVIDAAPAAGQMDQLAQMLAQAKAPVAILGGSRWNAQ FT AVQQFADFAQRHALPTAVSFRRQMLFPADHPCFIGDVGLGINPALLKRIEQADLVLMVG FT GRMSENPSQAYTLLDIPVPRQKLVHVHPDSAELGRVYRANLAINTSPAAFCAALAQANG FT PSQPAWADDTQAMRASYLQWSDPAAIRTPGALQLGEVMAFLEKTLPADAIMANGAGNYA FT TWLHRFHRYTRYGTQLAPTSGSMGYGLPAAVGAKRIWPQKTVVCFAGDGCFLMHGQEFA FT TAVQYDLPIVVVLIDNGMYGTIRMHQEKHYPGRISATSLKNPDFAEYARAFGGHGERVE FT TTEQFAPAFERALASGKPAILHCLIDPETITPSTTLEKIRAAALKAQ" FT misc_feature complement(224386..225942) FT /note="HMMPfam hit to PF00205, Thiamine pyrophosphate FT enzyme, central domain" FT misc_feature complement(224659..224718) FT /note="ScanRegExp hit to PS00187, Thiamine pyrophosphate FT enzymes signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 226163..227050 FT /transl_table=11 FT /locus_tag="BP1539" FT /product="probable LysR-familyt ranscriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa0448 TR:Q9I670 (EMBL:AE004482) FT (302 aa) fasta scores: E(): 3.2e-45, 44.33% id in 291 aa, FT and to Rhizobium meliloti probable transcription regulator FT protein Smc04882 TR:CAC47866 (EMBL:AL591793) (297 aa) fasta FT scores: E(): 8.5e-39, 37.75% id in 294 aa" FT /db_xref="GOA:Q7VY24" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VY24" FT /protein_id="CAE41828.1" FT /translation="MRNGIPNLSALQAFEATARLGSFSRAAEELSLTHSAVYRQVASLE FT DRLGVQLFTRVRRRIVLTDHGAEYAGRIRHHLDQIEKDTFGLVSRTGMGRSIHIAVVPT FT LATTWLIPRLADFQRVQPDITVSLSVRTLPFQFKDQPFDGALYHGDGIWPGTQGVLLFP FT ERELVPVCAPELAERAPGRDDGALGGMMHLYLYSRPDAWCQWYAANQYAYGPQAAGGPR FT YDLFTMMLAAVQAGLGVGLMPRFLVQDALDAGTLVMPVPQALSVSQGYYFGYPQRSERS FT GALKAFEVWLKSAV" FT misc_feature 226184..226552 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 226223..226288 FT /note="Predicted helix-turn-helix motif with score 1676 FT (+4.90 SD) at aa 43-64, sequence GSFSRAAEELSLTHSAVYRQVA" FT CDS 227088..228020 FT /transl_table=11 FT /gene="xerD" FT /gene_synonym="xprb" FT /locus_tag="BP1540" FT /product="integrase/recombinase" FT /note="Similar to Escherichia coli integrase/recombinase FT XerD or XprB or B2894 SW:XERD_ECOLI (P21891) (298 aa) fasta FT scores: E(): 1.3e-58, 56.95% id in 302 aa, and to FT Salmonella typhimurium integrase/recombinase XerD FT SW:XERD_SALTY (P55889) (298 aa) fasta scores: E(): 3.1e-58, FT 56.62% id in 302 aa. Also similar to BP3076, 38.066% FT identity (42.568% ungapped) in 331 aa overlap." FT /db_xref="GOA:Q7VY23" FT /db_xref="HSSP:1A0P" FT /db_xref="InterPro:IPR011932" FT /db_xref="UniProtKB/TrEMBL:Q7VY23" FT /protein_id="CAE41829.1" FT /translation="MSSSAPLASQADLDAFIDAVWLEDGLAANTLAAYRRDLSAFAQWL FT ENLACHPGLATGASLREAGKGDIEAWFAARHAESRATTANRRLAALRRFYAWALRERLT FT PSDPCLTLVTAKQPPRLPKTLSEAQVDALLQAPDLDTARGLRDRAMLETLYATGLRVSE FT LVSVKALDVSLNEGVVRVVMGKGGKDRLVPLGAEAAHWIERYAGSARPELLGARVADAL FT FVTARAEPMSRQAFWQLVKKYALAADIHAPLSPHVLRHAFATHLLNHGADLRVVQMLLG FT HADISTTQIYTHVARERLKALHAAHHPRA" FT misc_feature 227442..227990 FT /note="HMMPfam hit to PF00589, Phage integrase family" FT CDS 228034..228522 FT /transl_table=11 FT /locus_tag="BP1541" FT /product="conserved hypothetical protein" FT /note="Similar to Burkholderia solanacearum conserved FT hypothetical protein Rsc2545 TR:CAD16252 (EMBL:AL646070) FT (163 aa) fasta scores: E(): 7.4e-44, 69.75% id in 162 aa, FT and to Neisseria meningitidis hypothetical protein Nma1462 FT TR:Q9JU74 (EMBL:AL162756) (159 aa) fasta scores: E(): FT 2.6e-27, 44.72% id in 161 aa" FT /db_xref="GOA:Q7VY22" FT /db_xref="HSSP:1DBX" FT /db_xref="InterPro:IPR007214" FT /db_xref="UniProtKB/TrEMBL:Q7VY22" FT /protein_id="CAE41830.1" FT /translation="MSKNRHVSETPATQLLRQRKVAFTEHTYDYVDHGGAGEAARQLGL FT DPHAVVKTLIMEDEGGHPLVVLMHGDREVSTKNLERQAGLKKVAPCQPEVAQRHSGYQV FT GGTSPFGTRKRMPVWVEASVLDFPQIYVNGGRRGYLVGIAPQALVDLLGARAVQVALP" FT CDS 228640..229218 FT /transl_table=11 FT /locus_tag="BP1542" FT /product="conserved hypothetical protein" FT /note="Similar to Burkholderia solanacearum conserved FT hypothetical protein Rsc0416 TR:CAD13944 (EMBL:AL646059) FT (192 aa) fasta scores: E(): 1.1e-59, 77.6% id in 192 aa, FT and to Pseudomonas aeruginosa hypothetical protein Pa4336 FT TR:Q9HW65 (EMBL:AE004850) (194 aa) fasta scores: E(): FT 4.2e-58, 78.53% id in 191 aa. Also similar to BP0064, FT 65.104% identity (65.104% ungapped) in 192 aa overlap." FT /db_xref="GOA:Q7VY21" FT /db_xref="HSSP:1G2I" FT /db_xref="InterPro:IPR002818" FT /db_xref="UniProtKB/TrEMBL:Q7VY21" FT /protein_id="CAE41831.1" FT /translation="MSKKLLMLVGDYAEDYETMVPFQTLLAVGHTVHAVCPDKKAGDTV FT ATAIHDFEGAQTYSEKRGHNFTLNHDFAKVEPQHYDGLVIPGGRAPEYLRLDERVLDIV FT RHFDQAGKPIAAVCHGAQLLAAAGILQGRTCSAYPACAPEVRLAGGTYAEIGIDQAHTD FT GNLVTAPAWPAHPAWLAQFLAVLGTRISH" FT misc_feature 228646..229200 FT /note="HMMPfam hit to PF01965, ThiJ/PfpI family" FT CDS 229324..229692 FT /transl_table=11 FT /locus_tag="BP1543" FT /product="conserved hypothetical protein" FT /note="Similar to Burkholderia solanacearum hypothetical FT protein Rsc0415 TR:CAD13943 (EMBL:AL646059) (134 aa) fasta FT scores: E(): 1.7e-32, 73.55% id in 121 aa, and to FT Agrobacterium tumefaciens Agr_l_852p TR:AAK88997 FT (EMBL:AE008241) (152 aa) fasta scores: E(): 5.8e-19, 49.13% FT id in 116 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VY20" FT /protein_id="CAE41832.1" FT /translation="MCEIFIRANQRSYSVQARSLRLHGVATSVRLEQLFWDVLEEIAAR FT DGMRVTQLIERLYDELVQYRGEAANFTSFLRVCCLRYQVLQAEGRIPADATVPIRSLDA FT QAVLRGLPANLYDSRPLG" FT repeat_region 229689..229720 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 229689..230741 FT CDS 229791..230741 FT /transl_table=11 FT /locus_tag="BP1544" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA4" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA4" FT /protein_id="CAE41833.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 230049..230114 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 230172..230705 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(230710..230741) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(230748..231527) FT /transl_table=11 FT /gene="pbpG" FT /locus_tag="BP1545" FT /product="probable D-alanyl-D-alanine carboxypeptidase" FT /note="Similar to Escherichia coli penicillin-binding FT protein 7 precursor PbpG or B2134 SW:PBP7_ECOLI (P33364) FT (313 aa) fasta scores: E(): 3.1e-43, 49.81% id in 263 aa, FT and to Burkholderia solanacearum putative FT D-alanyl-D-alanine-endopeptidase Rsc1609 TR:CAD15311 FT (EMBL:AL646065) (375 aa) fasta scores: E(): 6.1e-50, 59.83% FT id in 244 aa" FT /db_xref="GOA:Q7VY19" FT /db_xref="HSSP:1J9M" FT /db_xref="InterPro:IPR018044" FT /db_xref="UniProtKB/TrEMBL:Q7VY19" FT /protein_id="CAE41834.1" FT /translation="MPPAAASPAAEAAALRSSTAYVQDLETSTVLFAKNENVVRPIASI FT SKLMTALVVVDANLPMDEMIEITDDDVDTLKHTTSRLRVGTVLSRGDMLHLALMSSENR FT AAHALGRNYPGGMPAFVAAMNAKARSLGMLNTRFVEPTGLSSENVSSPRDLARMLRAAS FT QRPLIHRYSTDTEYEVEINNRTQTFRNTNLLVRKPDWDIKVSKTGFINEAGECLVMLAR FT INGRDMAIVLLDSQGKLSRIGDAVRIRRIVQNDVAML" FT misc_feature complement(230754..231515) FT /note="HMMPfam hit to PF00768, D-alanyl-D-alanine FT carboxypeptidase" FT CDS 231526..231786 FT /transl_table=11 FT /locus_tag="BP1545A" FT /product="hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VY18" FT /protein_id="CAE41835.1" FT /translation="MAAVAAALARAVRVRARMVDLRVLPFLALAVFLLLADFFLAVLAD FT FLLEAVLAGAFLAEAFLACWDLQAADLALVLHGSALAACAA" FT tRNA complement(232226..232300) FT /note="tRNA Arg anticodon CCT, Cove score 58.52" FT CDS 232547..233749 FT /transl_table=11 FT /locus_tag="BP1546" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa probable MFS FT transporter Pa1286 TR:Q9I458 (EMBL:AE004558) (399 aa) fasta FT scores: E(): 9.9e-65, 49.61% id in 389 aa, and to FT Agrobacterium tumefaciens Agr_c_1918p TR:AAK86848 FT (EMBL:AE008034) (414 aa) fasta scores: E(): 4.1e-56, 41.87% FT id in 406 aa. Also similar to BP1973, 42.965% identity FT (43.959% ungapped) in 398 aa overlap." FT /db_xref="InterPro:IPR000209" FT /db_xref="UniProtKB/TrEMBL:Q7VY17" FT /protein_id="CAE41836.1" FT /translation="MSTSEKPSLRILFIGTGVVLLAMGVRATFGLFMQPMDLAHGWGRE FT VFSMAFALQNLVWGAACIGMGILADRYGSGRTIVLGAVLYALGMIGTRFATDEATLYLT FT AGVLVGLGQAGTTFPVILPVVARSVPAAYRSTAMGIASAGGSLGQFLVVPAGQQLITGL FT DWPGALWVLSLLVAVGAPLAYFLRGKPGVHGGVQQSLGAAVRQAMAHPSFHFLSWSYFV FT CGFHTAFITLHLPAYVVDAGMKASHGATAIALIGLCNVIGSFYAGKLGGVYSKRLLLAA FT IYGLRAFGMLLLLAVPLTPLVLYVFAGWMGLFWLGTVPLTQGLIGQIYGLRYAATLSGI FT AFLGHQVGSFIGVWMGGAVYARTGNYDLVWWTGVALAVVAALLCLPVREQPLAQPAAAR FT A" FT misc_feature 232547..232645 FT /note="Signal peptide predicted for BP1546 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.660) with cleavage site FT probability 0.202 between residues 33 and 34" FT misc_feature join(232571..232639,232682..232750,232769..232822, FT 232850..232918,232937..233005,233048..233104, FT 233189..233257,233285..233353,233390..233458, FT 233471..233539,233552..233620,233648..233707) FT /note="12 probable transmembrane helices predicted for FT BP1546 by TMHMM2.0 at aa 9-31, 46-68, 75-92, 102-124, FT 131-153, 168-186, 215-237, 247-269, 282-304, 309-331, FT 336-358 and 368-387" FT misc_feature 233252..233287 FT /note="ScanRegExp hit to PS00136, Serine proteases, FT subtilase family, aspartic acid active site." FT CDS 233953..236613 FT /transl_table=11 FT /locus_tag="BP1547" FT /product="conserved hypothetical protein" FT /note="Weakly similar to Caulobacter crescentus FT hypothetical protein Cc3537 TR:Q9A2M0 (EMBL:AE006012) (996 FT aa) fasta scores: E(): 1.6e-09, 26.54% id in 859 aa" FT /db_xref="InterPro:IPR019925" FT /db_xref="UniProtKB/TrEMBL:Q7VY16" FT /protein_id="CAE41837.1" FT /translation="MSDDFRTDFPSCTLRDLGELPAIDTLVLTVNNRLSRRLTLDLAAQ FT LSSERQVSELPRIMPLSAWLADCVAELAFDERYEVPAYRLSSFATQLVWREAIRLEEAD FT RALLDADQAARLALDADLLVDEWQAHVPAGAETDEYRGFSRWRARYRAMLGELDAEDAN FT QGYERVLEALRQGALRAPRHVALAGFVDISPRFARLLRALADGGADVVAWRDAVREPAW FT PQRFEAADRGAEWRAAARWAADRLRADPRGRYAIVSPQLEAEAPFARRVLGQALAGQDA FT PLPFNVAVGRALDEWPAVRAALAWLALLAEVAACGAGEPALFGAALLAGHCAGDLQEGP FT RHAALDARWRRQALAHVGPADWQRGLEECPRLAEGWSQAMAIWQAGQRSDTCDAWAPRF FT KAALTALGFPGERALDSVAYQVMGALGDLLAEFTALAPAAGRLDGRAAVRLLASAARAG FT SFQPQRDPSARLDVLGLLEAEGGAWDGIWVLGLTDDVLPASPKPNPLLPLAVLRQVGAP FT RATPEREREWAEGMFMALRRCAPEMIASHAAMDGERELRPSPLIVRAAPADWQPGTDAQ FT VAALEQEILDDSQGPPLQAERQSRGGLDVLDTQARNPLWAFVRHRLGGRAMAPYADAAT FT VSVRGQFLHRALELVWRMLPDQEALHAAMAEGRLAALVEQAIGEAARTELAGYPAALRE FT LECARAAAVLANWFDSEAQRQPFEVAQIEQEHSWQRGALALKVRLDRMDRLADGRALIV FT DYKTGAAPGRPESDWARARPVNLQLPFYASVLADGADTEVAGLMLAQIHARQVSAQGLA FT ADDLGIEGVTPVEQSKAFEGQPWPRILQRWRAAVEMLADEYANGYAANVALRQDDLKFC FT DAMPFLRLHLDDEDA" FT CDS 236626..240030 FT /transl_table=11 FT /locus_tag="BP1548" FT /product="putative nuclease/helicase" FT /note="Similar to Escherichia coli exodeoxyribonuclease V FT beta chain RecB or RorA or B2820 SW:EX5B_ECOLI (P08394) FT (1180 aa) fasta scores: E(): 0.0011, 23.34% id in 1118 aa, FT and to Rhizobium meliloti putative ATP-dependent FT nuclease/helicase protein Smc02760 TR:CAC41421 FT (EMBL:AL591782) (1189 aa) fasta scores: E(): 6.7e-17, 27.9% FT id in 1229 aa" FT /db_xref="GOA:Q7VY15" FT /db_xref="InterPro:IPR018130" FT /db_xref="UniProtKB/TrEMBL:Q7VY15" FT /protein_id="CAE41838.1" FT /translation="MTEPERLPHDHAARRQALDPSRSFLVQAPAGSGKTELLTDRILAL FT LATVTRPEEIVAITFTRKAASEMHARVLHKLSLGAGEPPRSAHERRSWELARAALARDQ FT EQGWHLLDHPARLAIRTIDSFCAGLVRGMPWLSELGGMPDIADDARAHYEAAARATLEL FT ADEHDAVRALLAHLDVDVQAAKDAIAAMLGQRDQWMPLLQFGLDRDGLEASLAEALEHE FT LDSLCGQLPRGWSQALCGPARLAAAALAGSGDARLAALQDWDAPLPPMAEALDQWRALA FT HLLLTGTGALRSPKGVNKNLGFPAGCDHKEPFTAWLAACDGGAPWVRALAAVRDMPDAH FT FSDAQWDVLSAQLTTLALSVAQLRVQFARAGEVDFIEIAQRAAYALGSGDDPGELLLKL FT DASIRHLLIDEFQDTSQGQIDLLATLTAGWQDGDGRTLFLVGDPMQSIYRFRKAEVGLF FT LQVAERGVGQIRPGFLQLTDNFRSQGGVVDWVNRVFAQLLPRANDADSGAIAYSPSTAF FT HETAPGEAVLFHPAWECGDAASAERQAEDIAVGLVRAALAEHEGSRHPVAILVRARSHL FT GSLTRRLAQEGIPCRAVELVPLGLRPVVADLVQLARALAHPGDRLAWLSVLRAPWCGLT FT LTSLQRLFGADQLTPVPTLLERALRGAARSEGGQGSLFDAPAPGCLAEQALAPDEYRRL FT RAVAAILLDRANDAGLLPLAAWLEQLWRRLGGPGLYAGSSAASDAESLFQLIERLAPHG FT GLDAGLLDTAVARLFAAPQATGEQGTVEIMTMHKSKGLQFDTVILYGLHRAPRGDQAPL FT VRFEQSRGRVLLGPIKPRAETEADPVSRYLGAREARRAAYETDRLFYVAATRARQRLHL FT VAHVAVDAASGQARTPASASLLGRLWPHLSVPQPPDVAQDQAAATGEQPALVGEPLRRL FT AGAGLASLAARTLPREAAAGVYGGGQGAEHPSWQLEAGYDAAVGTLAHAWLARIGGDGP FT QHWSADALAVRLPAMRRQLTRAGIPAGQADAAAQAVLDTLQSTLDDERGRWLLGQARAR FT REWPLIDAAGRVSVIDLALSTEDGWLIVDYKTGRPHEHETPEQFAIRMRQRHGEQLMRY FT CAQVTALDGRPARAALYFPRARAWIDL" FT misc_feature 236653..237003 FT /note="HMMPfam hit to PF00580, UvrD/REP helicase" FT misc_feature 236707..236730 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 237739..237774 FT /note="ScanRegExp hit to PS01034, Glycosyl hydrolases FT family 16 active sites." FT misc_feature 237805..238554 FT /note="HMMPfam hit to PF00580, UvrD/REP helicase" FT misc_feature 238321..238356 FT /note="ScanRegExp hit to PS00962, Ribosomal protein S2 FT signature 1." FT CDS 240833..242923 FT /transl_table=11 FT /gene="dnaX" FT /gene_synonym="dnaZ" FT /gene_synonym="dnazX" FT /locus_tag="BP1549" FT /product="DNA polymerase III subunit Tau" FT /EC_number="2.7.7.7" FT /note="Similar to Escherichia coli DNA polymerase III FT subunit Tau DnaX or DnaZ or DnazX or B0470 SW:DP3X_ECOLI FT (P06710) (643 aa) fasta scores: E(): 4.9e-43, 44.33% id in FT 503 aa, and to Pseudomonas aeruginosa DNA polymerase FT subunits gamma and Tau DnaX or Pa1532 TR:Q9I3I1 FT (EMBL:AE004581) (681 aa) fasta scores: E(): 2.7e-51, 43.14% FT id in 700 aa" FT /db_xref="GOA:Q7VY14" FT /db_xref="HSSP:1JR3" FT /db_xref="InterPro:IPR012763" FT /db_xref="UniProtKB/TrEMBL:Q7VY14" FT /protein_id="CAE41839.1" FT /translation="MTYLVLARKWRPRSFDTLIGQDHVVRALTHALDTQRLHHAWLFTG FT TRGVGKTTLSRILAKSLNCENGITSKPCGQCRACTEIDAGRFVDYLELDAASNRGVEEM FT TQLLEQAVYAPGAGRFKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIP FT VTVLSRCLQFNLKQMPPDAIVGHLQAVLGEEQIGFEVPALRLIGQAAGGSMRDALSLTD FT QAIAYSAGNLSEEAVRGMLGTIDQRHLVRLLDALASGDAAGVLAVADELAVRGLSYAGA FT LADLAVLLSRVAIEQRVRGALPQDDPLTEDITRLAAALHPDAVQLFYSVAVHSRGELTL FT SPDEYAGFVMACLRMLALNGEAGPATAVQAPRADTTPRAAAPAAAAPAETRPEPTPAPA FT LAPQAAAAPRAVARSESKPQPAPEPEPEPEPAPRPAATPVAATPPAVAEPEPVAAPAAQ FT ARAAEPAPAPVPPWEDLPEAVAAPAPAQPAAAPAPVAADDDGPPAWVDEAIPDEAGGGF FT VPEHSFTADPDDEFETLAPAAAAMPAPRAPTPRRESGGRGRAARSRLADMSPTGWPELA FT ARLPVTGLAAELARQSEWAGVQGDAVLLRVAVRTLAESESRVRLQTVLCEHFGQGLRLE FT IEVGVTGDGTAHAVAQIERAARQQAAEDAVAVDPFVQALVADFGGRVVPGSIRHVDNPP FT AA" FT misc_feature 240950..241522 FT /note="HMMPfam hit to PF00004, ATPase family associated FT with various cellular activities (AAA)" FT misc_feature 240965..240988 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 242970..243296 FT /transl_table=11 FT /locus_tag="BP1550" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1533 TR:Q9I3I0 (EMBL:AE004581) (108 aa) fasta FT scores: E(): 4.5e-23, 63.88% id in 108 aa, and to FT Haemophilus influenzae protein Hi0442 SW:YBAB_HAEIN FT (P44711) (109 aa) fasta scores: E(): 3.9e-23, 63.2% id in FT 106 aa" FT /db_xref="InterPro:IPR004401" FT /db_xref="UniProtKB/Swiss-Prot:Q7VY13" FT /protein_id="CAE41840.1" FT /translation="MMKGQLAGLMRQAQQMQENMKKAQDALAEIQVEGAAGGGLVKVTM FT TCRHDVKRVAIDASLLGEDKDMLEDLVAAAFNDALRKAEATSQEKMASVTAGMPLPPGM FT KLPF" FT misc_feature 242970..243257 FT /note="HMMPfam hit to PF02575, Uncharacterized BCR, YbaB FT family COG0718" FT CDS 243347..243955 FT /transl_table=11 FT /gene="recR" FT /locus_tag="BP1551" FT /product="recombination protein RecR" FT /note="Similar to Escherichia coli recombination protein FT RecR or B0472 or Z0589 or Ecs0525 SW:RECR_ECOLI (P12727) FT (201 aa) fasta scores: E(): 6.1e-32, 46.35% id in 192 aa, FT and to Pseudomonas aeruginosa recombination protein RecR or FT Pa1534 TR:Q9I3H9 (EMBL:AE004582) (198 aa) fasta scores: FT E(): 1.3e-34, 51.04% id in 192 aa" FT /db_xref="GOA:Q7VY12" FT /db_xref="InterPro:IPR015967" FT /db_xref="UniProtKB/Swiss-Prot:Q7VY12" FT /protein_id="CAE41841.1" FT /translation="MDPQLPEPEPLIALIEALRRLPGVGVRSARRMAYHLLQHDLQGAD FT MLGRALSAAVQHLRHCARCNSFTEDEVCATCANPKRDPGLLCIVETPADQNMIESSHGY FT RGLYYVLMGRIAPLEGVGPRELDFQRVIERACDGVVQEVILATNFTAEGETTAHFLDDA FT LSERGLKVTRLARGVPAGSELEYVDAGTIAWALMERRST" FT misc_feature 243470..243595 FT /note="HMMPfam hit to PF02132, RecR protein" FT misc_feature 243596..243877 FT /note="HMMPfam hit to PF01751, Toprim domain" FT repeat_region 243952..243983 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 243952..245004 FT CDS 244054..245004 FT /transl_table=11 FT /locus_tag="BP1552" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q84CT8" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q84CT8" FT /protein_id="CAE41842.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAAL |