EBI Dbfetch

ID   BX640414; SV 1; linear; genomic DNA; STD; PRO; 343243 BP.
XX
AC   BX640414;
XX
DT   09-AUG-2003 (Rel. 76, Created)
DT   23-OCT-2008 (Rel. 97, Last updated, Version 6)
XX
DE   Bordetella pertussis strain Tohama I, complete genome; segment 4/12
XX
KW   complete genome.
XX
OS   Bordetella pertussis
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Alcaligenaceae; Bordetella.
XX
RN   [2]
RP   1-343243
RA   Sebaihia M.;
RT   ;
RL   Submitted (06-AUG-2003) to the EMBL/GenBank/DDBJ databases.
RL   Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute,
RL   Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail:
RL   ms5@sanger.ac.uk
XX
RN   [3]
RA   Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E.,
RA   Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L.,
RA   Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A.,
RA   Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I.,
RA   Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T.,
RA   Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S.,
RA   Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E.,
RA   Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M.,
RA   Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S.,
RA   Barrell B.G., Maskell D.J.;
RT   "Comparative analysis of the genome sequences of Bordetella pertussis,
RT   Bordetella parapertussis and Bordetella bronchiseptica";
RL   Nat. Genet. 35(1):0-0(2003).
XX
DR   EMBL-CON; BX470248.
DR   GOA; P61034.
DR   InterPro; IPR003010; Ntlse/CNhydtse.
DR   RFAM; RF01070; sucA.
DR   UniProtKB/Swiss-Prot; P61034; LNT_BORPE.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..343243
FT                   /organism="Bordetella pertussis"
FT                   /strain="Tohama I"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:520"
FT   CDS             194..2230
FT                   /transl_table=11
FT                   /gene="tktA"
FT                   /gene_synonym="tkt"
FT                   /locus_tag="BP0999"
FT                   /product="transketolase 1"
FT                   /EC_number="2.2.1.1"
FT                   /note="Similar to Escherichia coli transketolase 1 TktA or
FT                   Tkt or B2935 SW:TKT1_ECOLI (P27302) (663 aa) fasta scores:
FT                   E(): 5.7e-137, 63.433% id in 670 aa, and to Pasteurella
FT                   multocida transketolase 1 TktA or Pm1242 SW:TKT1_PASMU
FT                   (P57927) (668 aa) fasta scores: E(): 3e-158, 61.504% id in
FT                   678 aa"
FT                   /db_xref="GOA:Q7VZC0"
FT                   /db_xref="HSSP:1GPU"
FT                   /db_xref="InterPro:IPR005475"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZC0"
FT                   /protein_id="CAE41300.1"
FT                   /translation="MSNPTAPKLALADAIRVLAMDAVQKANSGHPGAPMGMAEIAQALW
FT                   LGNLRHNPADPAWANRDRFVLSNGHGSMLIYALLHLTGYDLPLEELKNFRQLHSRTPGH
FT                   PEVGITPGVETTTGPLGQGLANAVGMALAEALLAAEFNRAGHTVVDHHTYVFLGDGCLM
FT                   EGISHEACSLAGTLKLSKLVALYDDNGISIDGHVEHWFADDTATRFEGYGWNVIRGVDG
FT                   HDVAAVDAAIKQARAQSEKPTLIVCRTVIGKGSPNMAGTHNVHGAPLGNDEIAATRAAL
FT                   GWSAGPFEVPQDIYAAWDSRPAGALAQAAWEDKFQAYAAQYPAEAAEFTRRMKGELPEG
FT                   FAARFEAFLQATVAKGETVATRKASQFAIAELAGLLPEMLGGSADLTGSNFTDWKGVAP
FT                   LRAGHHGVHFGRHINYGVREFGMAAIMNGIALHGGYLPFGGTFLTFSDYSRNAIRMAAL
FT                   MKQRVVHVFTHDSIGLGEDGPTHQSIEHAASLRLIPNLSVWRPCDTVETAAAWGAAVTR
FT                   PASIGMDLHDGGPTALLLSRQNLPFVARDEATQKAIVRGGYVLRDAHDARAAIIATGSE
FT                   VAIALAAQELLAADGIAVRVVSMPSTDVFDRQDAEWKREVLPAGMPRVAVEAGVTAFWH
FT                   KYVGLEGAVVGIDRYGESAPAGALFKFFGLTAEKVAEAVKQVL"
FT   misc_feature    227..2203
FT                   /note="HMMPfam hit to PF00456, Transketolase, thiamine
FT                   diphosphate binding domain"
FT   misc_feature    239..301
FT                   /note="ScanRegExp hit to PS00801, Transketolase signature
FT                   1. Confirmed by InterPro eMOTIF pattern match."
FT   CDS             2248..3258
FT                   /transl_table=11
FT                   /gene="gap"
FT                   /gene_synonym="hexC"
FT                   /locus_tag="BP1000"
FT                   /product="glyceraldehyde-3-phosphate dehydrogenase"
FT                   /EC_number="1.2.1.12"
FT                   /note="Similar to Pseudomonas aeruginosa glyceraldehyde
FT                   3-phosphate dehydrogenase Gap or HexC or pa3195
FT                   SWALL:G3P_PSEAE (SWALL:P27726) (334 aa) fasta scores: E():
FT                   9.1e-84, 66.07% id in 336 aa, and to Alcaligenes eutrophus
FT                   glyceraldehyde 3-phosphate dehydrogenase, plasmid cbbgP
FT                   SWALL:G3PP_ALCEU (SWALL:P50322) (336 aa) fasta scores: E():
FT                   1.1e-107, 84.52% id in 336 aa"
FT                   /db_xref="GOA:Q7VZB9"
FT                   /db_xref="HSSP:1GD1"
FT                   /db_xref="InterPro:IPR006424"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZB9"
FT                   /protein_id="CAE41301.1"
FT                   /translation="MTIRVVINGYGRIGRNILRAHYENGKKHDIEIVAINDLGDPKTNA
FT                   HLTRFDTAHGKFPGTVTVDGDYMVVNGDKIRVLANRNPAELPWGELGVDVVLECTGFFT
FT                   SKEKAGAHLKGGAKKVIISAPGGKDVDATIVFGVNQNVLKAEHTVISNASCTTNCLAPL
FT                   VKPLHDKLGVETGLMTTVHAYTNDQVLTDVYHEDLRRARSATMSMIPTKTGAAAAVGLV
FT                   LPELNGKLDGFAIRVPTINVSLVDLSFVAKRDTTVEEVNSILQAAAEGELKDILTYNTE
FT                   PLVSIDFNHNPASSNFDATLTKVSGKLVKVSSWYDNEWGFSNRMLDTTVALMSAK"
FT   misc_feature    2251..3252
FT                   /note="HMMPfam hit to PF00044, Glyceraldehyde 3-phosphate
FT                   dehydrogenase, NAD binding domain"
FT   misc_feature    2704..2727
FT                   /note="ScanRegExp hit to PS00071, Glyceraldehyde
FT                   3-phosphate dehydrogenase active site. Confirmed by
FT                   InterPro eMOTIF pattern match."
FT   CDS             3376..4569
FT                   /transl_table=11
FT                   /gene="pgk"
FT                   /locus_tag="BP1001"
FT                   /product="phosphoglycerate kinase"
FT                   /EC_number="2.7.2.3"
FT                   /note="Similar to Escherichia coli phosphoglycerate kinase
FT                   Pgk or B2926 SW:PGK_ECOLI (P11665) (386 aa) fasta scores:
FT                   E(): 6.3e-83, 64.042% id in 381 aa, and to Alcaligenes
FT                   eutrophus phosphoglycerate kinase, chromosomal CbbkC
FT                   SW:PGKC_ALCEU (P50319) (413 aa) fasta scores: E():
FT                   1.8e-103, 75.381% id in 394 aa"
FT                   /db_xref="GOA:Q7VZB8"
FT                   /db_xref="InterPro:IPR015824"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VZB8"
FT                   /protein_id="CAE41302.1"
FT                   /translation="MSNVNTLSALAKSGALSGKRVFIRADLNVPFDDAGRISEDTRIRA
FT                   SVPGIRLALDAGAAVMVTSHLGRPKEGALTEADSLAPVAQRLSELLGMQVRLVPDWVDG
FT                   VSVEPGEVVLLENCRGNVGEKKDDEGLSRKMAALCDVYVNDAFGTAHRAEATTHGIARF
FT                   APVACAGPLLEAELDALGRALHDPKRPLVAIVGGSKVSTKLSILQSLADKVDQLVVGGG
FT                   IANTFMLAAGLPIGKSLAEPEQVEQARAVIEIMKRRGAEVPIPTDVVCAKSFGADAAAT
FT                   VKAAADVAEDDMILDIGPQTAQRLADILKTAGTIVWNGPVGVFEFDQFAHGTEVVARAI
FT                   ADSAGFSIAGGGDTLAAIAKYGIADQTGYISTGGGAFLEFLEGKALPAVAVLQARAA"
FT   misc_feature    3421..4563
FT                   /note="HMMPfam hit to PF00162, Phosphoglycerate kinase"
FT   misc_feature    3433..3465
FT                   /note="ScanRegExp hit to PS00111, Phosphoglycerate kinase
FT                   signature. Confirmed by InterPro eMOTIF pattern match."
FT   misc_feature    4066..4089
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   CDS             complement(4599..5372)
FT                   /transl_table=11
FT                   /gene="fabI"
FT                   /gene_synonym="envM"
FT                   /locus_tag="BP1002"
FT                   /product="enoyl-[acyl-carrier-protein] reductase [NADH]"
FT                   /EC_number="1.3.1.9"
FT                   /note="Similar to Escherichia coli, and
FT                   enoyl-[acyl-carrier-protein] reductase [NADH] FabI or EnvM
FT                   or B1288 or Z2512 or Ecs1861 SW:FABI_ECOLI (P29132) (261
FT                   aa) fasta scores: E(): 1.1e-35, 41.200% id in 250 aa, and
FT                   to Rhizobium meliloti putative enoyl-acyl-carrier-protein
FT                   reductase NADH TR:CAC41683 (EMBL:AL591783) (268 aa) fasta
FT                   scores: E(): 3e-40, 44.578% id in 249 aa"
FT                   /db_xref="GOA:Q7VZB7"
FT                   /db_xref="HSSP:1DFI"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZB7"
FT                   /protein_id="CAE41303.1"
FT                   /translation="MNAAAPLQGRRGLVTGIANQDSIAWGCARAFRALGAELAVTYLND
FT                   KARVHVEPLARSIDAALLLPLDLRVDGQLESVFEQIGARWGSLDFVMHSIAYAPRDDLR
FT                   GRVVDCSRAGFLQAMDISCWSFIRMAHLAEPLMPKGGTLFCMTYYGSQMVVEHYNMMGP
FT                   VKAALESATRYLAAELGPQGIRVHAISPGPLKTRAASGITGFDALLDRAQAKAPARSLV
FT                   GIDDVDEATAWLATDAARRITGQTLYIDGGYHIID"
FT   misc_feature    complement(4626..4718)
FT                   /note="HMMPfam hit to PF00678,"
FT   misc_feature    complement(5049..5078)
FT                   /note="ScanRegExp hit to PS00215, Mitochondrial energy
FT                   transfer proteins signature."
FT   CDS             complement(5369..6559)
FT                   /transl_table=11
FT                   /gene="ackA"
FT                   /gene_synonym="ack"
FT                   /locus_tag="BP1003"
FT                   /product="acetate kinase"
FT                   /EC_number="2.7.2.1"
FT                   /note="Similar to Escherichia coli acetate kinase AckA or
FT                   Ack or B2296 or z3558 or ecs3180 SW:ACKA_ECOLI (P15046)
FT                   (400 aa) fasta scores: E(): 7.7e-39, 38.653% id in 401 aa,
FT                   and to Rhizobium meliloti putative acetate kinase
FT                   TR:CAC49250 (EMBL:AL603645) (392 aa) fasta scores: E():
FT                   2.3e-76, 54.198% id in 393 aa"
FT                   /db_xref="GOA:Q7VZB6"
FT                   /db_xref="HSSP:1G99"
FT                   /db_xref="InterPro:IPR004372"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZB6"
FT                   /protein_id="CAE41304.1"
FT                   /translation="MSDNLLVINAGSSSLKFYLYEIAEGDELRPTLGGQLDGIGGSRPH
FT                   LRIRAQDGHTLLERDVAPTHAADVPGAQEVLGTWLSGHLGGAPCAIGHRVVHGGTQYDA
FT                   PVLVDDDVLAQLDDLTPLAPLHQPNNLAPIRVIRERRPNIPQVACFDTAFHRTHSPLAD
FT                   RYALPEHLYQEGVRRYGFHGLSYEYIAQRLRRALPEIAGGKIVAAHLGNGVSACTMVDG
FT                   RSVDSTMGFTALEGLPMGTRPGRLDPGVVLWMMERGMSHDDIEHLLYHDCGLKGLSGIG
FT                   NDVRELLASDAPAARLALDYFAWRVAEGIAGLGCAMNGIDAIVFTAGIGENAAPVRAAI
FT                   ARHWEWLGVRLDEARNARHGPRISSDDSAIGVYVVRTNEELIIAQHTLALVRQRQA"
FT   misc_feature    complement(5405..6550)
FT                   /note="HMMPfam hit to PF00871, Acetokinase family"
FT   misc_feature    complement(6512..6547)
FT                   /note="ScanRegExp hit to PS01075, Acetate and butyrate
FT                   kinases family signature 1. Confirmed by InterPro eMOTIF
FT                   pattern match."
FT   CDS             complement(6585..7523)
FT                   /transl_table=11
FT                   /locus_tag="BP1004"
FT                   /product="phosphate acetyl/butaryl transferase"
FT                   /EC_number="2.3.1.19"
FT                   /note="Similar to Clostridium beijerinckii phosphate
FT                   butyryltransferase Ptb SW:PTB_CLOBE (Q05624) (302 aa) fasta
FT                   scores: E(): 2.3e-39, 40.339% id in 295 aa, and to
FT                   Rhizobium meliloti phosphate acetyltransferase Pta
FT                   SW:PTA_RHIME (Q9X448) (316 aa) fasta scores: E(): 1.4e-76,
FT                   71.661% id in 307 aa"
FT                   /db_xref="GOA:Q7VZB5"
FT                   /db_xref="InterPro:IPR002505"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZB5"
FT                   /protein_id="CAE41305.1"
FT                   /translation="MSATRHNHYERLIAHARTLPALPCAVAHPCDETSLGAALQAMQLG
FT                   LLTPILVGPQQKIRDVAERCGLDLGGAAIVDAPHSHAAAAAAVQLVRGGQASLLMKGSL
FT                   HTDELMHEVVARDTGLRTERRISHVFIMDVPTYPEPLFITDAAINIFPDLETKADIVRN
FT                   AIALHLGLGLGEPRVAILSAVEQVMPSIPSTLEAAALCKMADRGQIQGGILDGPLALDN
FT                   AISPEAAQVKGIVSPVAGRAQVLVVPDLEAGNMLAKNLSFLANAQAAGIVLGARVPIVL
FT                   TSRADSAQTRLASCAVATLYAHHLARATPLA"
FT   misc_feature    complement(6627..7505)
FT                   /note="HMMPfam hit to PF01515, Phosphate acetyl/butaryl
FT                   transferase"
FT   CDS             complement(7520..9868)
FT                   /transl_table=11
FT                   /locus_tag="BP1005"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Rhizobium meliloti hypothetical 80.6 kDa
FT                   protein in ackA 5'region SW:YACK_RHIME (Q9X447) (733 aa)
FT                   fasta scores: E(): 4.3e-155, 56.428% id in 739 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZB4"
FT                   /protein_id="CAE41306.1"
FT                   /translation="MAASAADRTAPDRSPAPAAHPAANLWTSAYQYTLDAWQRGILYTD
FT                   VMRQRGNQYLTHMAKRAPNVLSMKSELVLDGRKFERPVNYALLRIVPPADAPVDPQKHP
FT                   FLVVDPRAGHGPGIGGFKPESEIGVAVRAGHPCYFATFLPHPTDTQTVEDVMRAEARFL
FT                   EEIIALHPQAEGRPVVVGNCQAGWQIMMTAAMRPELFGPIIVAGAPLSYWAGWRDMNPM
FT                   RYSGGLLGGSWLTQMTSDLGNGKFDGAWLVQNFENLNPANTLWSKQYNLYAKVDTEAPR
FT                   YLEFEKWWGGHVFLNGPEIQYIVDNLFVGNRLATAGLVTSDGIRIDLRNIRSPIIVFCS
FT                   KGDNITPPPQALGWITDLYQDDREVVAHNQTIVYAVHESIGHLGIFVSGAVARKEHQEF
FT                   TANIDVIDVLPPGIYQAEIADKTPDTPNADLAYGDYVLSFERRRLDDVREIVERNEEDD
FT                   QRFAAVARISDINLGLYRSFVQPWVRAAVTPQSAEWMQRMHPLRLPYELISDRNPWVAP
FT                   VAQLAEQVREQRQPAAPDNPFWALQKMASDAIVAGLDIWRDLRDSACERIFMATYGSPL
FT                   VQDWAGLGAKDGPPRRHPGVSPEHRDFMAARAAELRAQIDQGGLREAGLRMLLYVSGAE
FT                   GGVDERSFAMIRKMRADTDAKLSLQAFKDATRDQALMMQLDGPAAIRAIPKLLENASAA
FT                   DIRATLHGITHVLEAAGPLSDRARASLDEMKRLFQGAERRAVKRADAPAPARKAAARKT
FT                   ATGKAATGKTAARPAGRKAAATPRKGRTA"
FT   misc_feature    complement(7580..7603)
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   CDS             complement(10023..10664)
FT                   /transl_table=11
FT                   /locus_tag="BP1006"
FT                   /product="probable glutathione S-transferase"
FT                   /note="Similar to Escherichia coli hypothetical Gst-like
FT                   protein YfcF or B2301 SW:YFCF_ECOLI (P77544) (214 aa) fasta
FT                   scores: E(): 1e-33, 52.683% id in 205 aa, and to
FT                   Pseudomonas aeruginosa probable glutathione S-transferase
FT                   Pa4401 TR:Q9HW05 (EMBL:AE004855) (211 aa) fasta scores:
FT                   E(): 5.6e-08, 31.905% id in 210 aa"
FT                   /db_xref="GOA:Q7VZB3"
FT                   /db_xref="InterPro:IPR012335"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZB3"
FT                   /protein_id="CAE41307.1"
FT                   /translation="MPAPLTLYVDARFRSPYAMSAHVALAEKQLEFEVRLVDLAAGEQR
FT                   MQPYQSRALTARVPALAHAGFHLTESSAIQEYLEDAFAPPAHPALYPAGAQARARARQV
FT                   QAWLRTDLAALRRARPIDSVFDAPATTPLDDAAHCDAAKLIRVAEALLPPGQAHLFGAW
FT                   SIVDTELALMLNRLAHSGDDLPAPLRDYAAAQWQRASVQAWLRHYEAARG"
FT   misc_feature    complement(10338..10652)
FT                   /note="HMMPfam hit to PF00043, Glutathione S-transferase,
FT                   C-terminal domain"
FT   CDS             complement(join(10768..10947,11997..12152))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP1008"
FT                   /product="conserved hypothetical protein (Pseudogene)"
FT                   /note="Pseudogene. This CDS is disrupted by the insertion
FT                   of IS481 element. No significant database matches"
FT                   /db_xref="PSEUDO:CAE41308.1"
FT   CDS             complement(10951..11901)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP1007"
FT                   /product="transposase (Pseudogene)"
FT                   /note="Pseudogene. Transposase for IS481 element. The
FT                   transposase lacks a stop codon, hence it is fused to the
FT                   C-terminal portion of the disrupted CDS."
FT   repeat_region   10952..10978
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   complement(10952..12003)
FT   misc_feature    complement(10987..11520)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   CDS             complement(12178..12726)
FT                   /transl_table=11
FT                   /locus_tag="BP1009"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Bacillus subtilis DinB protein DinB
FT                   SW:DINB_BACSU (Q02886) (172 aa) fasta scores: E(): 0.0003,
FT                   28.571% id in 161 aa, and to Rhizobium meliloti conserved
FT                   hypothetical protein Smc00593 TR:CAC45741 (EMBL:AL591786)
FT                   (170 aa) fasta scores: E(): 4.6e-09, 38.554% id in 166 aa"
FT                   /db_xref="InterPro:IPR007837"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZB2"
FT                   /protein_id="CAE41310.1"
FT                   /translation="MPTPADLQLLADYNQWMNQRLYACAAQLPPDELARERGAYFGSLL
FT                   GTLNHVAVSDRVWLQRFAAHPARPAALQPVLALPTPARLDEVLYPALGPLAAHRAWLDR
FT                   CIVDWAAQLRPDDLACELAYTSLACEAARRPFGGLVLHFFNHQTHHRGQATTLLSQAGI
FT                   DMGATDLVLRVPASGDAPA"
FT   CDS             complement(12745..13230)
FT                   /transl_table=11
FT                   /locus_tag="BP1010"
FT                   /product="putative acetyltransferase"
FT                   /note="Similar to Synechocystis sp hypothetical 19.4 kDa
FT                   protein Slr1340 TR:P74076 (EMBL:D90912) (178 aa) fasta
FT                   scores: E(): 9.8e-35, 55.346% id in 159 aa, and to Anabaena
FT                   sp putative acetyltransferase TR:Q9KHE3 (EMBL:AF262218)
FT                   (164 aa) fasta scores: E(): 2.3e-07, 31.111% id in 135 aa"
FT                   /db_xref="GOA:Q7VZB1"
FT                   /db_xref="InterPro:IPR016181"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZB1"
FT                   /protein_id="CAE41311.1"
FT                   /translation="MLEIIEADFNDAAHARAIIALLDEYARGPMGGGEPLSAHARANLV
FT                   AELARRPHARALLAWQDGEPAGLAICIEGFSTFACRPLLNLHDLAVAERFRGQGVGTRL
FT                   LEALEALAARLDCCKVTLEVLEGNTRAQALYRRLGYAGYELAADTGRAMFWQKKLSA"
FT   misc_feature    complement(12808..13062)
FT                   /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT)
FT                   family"
FT   CDS             13408..14346
FT                   /transl_table=11
FT                   /gene="cbpA"
FT                   /locus_tag="BP1011"
FT                   /product="curved DNA-binding protein"
FT                   /note="Similar to Escherichia coli curved DNA-binding
FT                   protein CbpA or B1000 SW:CBPA_ECOLI (P36659) (306 aa) fasta
FT                   scores: E(): 2.9e-26, 41.772% id in 316 aa, and to
FT                   Caulobacter crescentus DnaJ family protein cc2772 TR:Q9A4Q8
FT                   (EMBL:AE005942) (314 aa) fasta scores: E(): 4.2e-31,
FT                   41.742% id in 333 aa"
FT                   /db_xref="GOA:Q7VZB0"
FT                   /db_xref="HSSP:1BQZ"
FT                   /db_xref="InterPro:IPR003095"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZB0"
FT                   /protein_id="CAE41312.1"
FT                   /translation="MEFKDYYKILGVQSDAPEDEIRRAYRKLARKYHPDVSKESDAETR
FT                   MRDVNEAYDVLGNQEKRQAYDNLAAGVAPDGGFQPPPGWDQGFEFHYARDGEGDQQFSD
FT                   FFSSLFGGQARRRAAQQDFRARGEDHHAAIEVDLEDALRGATRDISLRSMQPDEHGQPQ
FT                   VRTRTLSVRIPAGVREGQYIRLAGQGMPGYGGAENGDLYLEVRFKPHPRYRAEGRDLYM
FT                   NLPVAPWEAALGAQVEAPTPGGAVEVAVPPGSRNGRKLRLRGRGIPGDPPGDLYLVLDL
FT                   VLPPADSEAAREAYRKMAQDLAFDPRRNLGV"
FT   misc_feature    13420..13614
FT                   /note="HMMPfam hit to PF00226, DnaJ domain"
FT   misc_feature    13948..14304
FT                   /note="HMMPfam hit to PF01556, DnaJ C terminal region"
FT   CDS             14349..14666
FT                   /transl_table=11
FT                   /locus_tag="BP1012"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Thermus thermophilus dnaK operon DafA
FT                   TR:P77527 (EMBL:Y07826) (78 aa) fasta scores: E(): 0.93,
FT                   38.776% id in 49 aa, and to Rhizobium meliloti hypothetical
FT                   13.0 kDa protein Sma0117 TR:AAK64718 (EMBL:AE007200) (112
FT                   aa) fasta scores: E(): 0.48, 39.706% id in 68 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZA9"
FT                   /protein_id="CAE41313.1"
FT                   /translation="MSKIVVTQATVIGKTRALSAEELAHACDAEVEWVARLVEVGIVPA
FT                   RGRQPAEWRFYSLDLRRAREARRLERDMGAGLDAAALILDLCQEVRQLKARLRALGEPP
FT                   A"
FT   CDS             14712..15656
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP1013"
FT                   /product="putative membrane protein (pseudogene)"
FT                   /note="Psudogene. Due to a deletion relative to
FT                   parapertussis and bronchiseptica, it's possible that this
FT                   CDS is the result of a fusion between two adjacent CDSs.
FT                   Similar to Escherichia coli hypothetical protein YgaZ or
FT                   B2682 SW:YGAZ_ECOLI (P76630) (245 aa) fasta scores: E():
FT                   2e-21, 38.318% id in 214 aa, and to Erwinia chrysanthemi
FT                   YgaZ protein TR:CAC44347 (EMBL:AJ410307) (247 aa) fasta
FT                   scores: E(): 1.1e-20, 39.524% id in 210 aa"
FT                   /db_xref="PSEUDO:CAE41314.1"
FT   misc_feature    join(14781..14849,14862..14930,14940..15008,15126..15194,
FT                   15222..15275,15309..15377,15450..15518,15579..15647)
FT                   /note="8 probable transmembrane helices predicted for
FT                   BP1013 by TMHMM2.0 at aa 24-46, 51-73, 77-99, 139-161,
FT                   171-188, 200-222, 247-269 and 290-312"
FT   CDS             complement(15677..17152)
FT                   /transl_table=11
FT                   /gene="pitA"
FT                   /gene_synonym="pit"
FT                   /locus_tag="BP1014"
FT                   /product="probable phosphate transporter"
FT                   /note="Similar to Escherichia coli low-affinity inorganic
FT                   phosphate transporter 1 PitA or Pit or B3493 or Z4893 or
FT                   Ecs4365 SW:PITA_ECOLI (P37308) (499 aa) fasta scores: E():
FT                   1.3e-66, 57.085% id in 494 aa, and to Pseudomonas
FT                   aeruginosa probable phosphate transporter pa4292 TR:Q9HWA8
FT                   (EMBL:AE004845) (489 aa) fasta scores: E(): 2e-152, 80.493%
FT                   id in 487 aa"
FT                   /db_xref="GOA:Q7VZA8"
FT                   /db_xref="InterPro:IPR001204"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZA8"
FT                   /protein_id="CAE41315.1"
FT                   /translation="MLHLFSGLDLWVGLSLVLALTFVLAFEFINGFHDTANAVATVIYT
FT                   KAMPPHLAVILSGIFNFLGVLLGGVGVAYAIVHLLPVELLINVDTGRGLAMVFAMLSAA
FT                   IAWNLGTWYFGIPASSSHTLIGSILGVGMANALLTDISLAEGVNWGKAIDIGLSLVVSP
FT                   VAGFMVAGGILLLLKRWLPLSKMHKTPEQRRAIDAKKHPPFWNRLVLVLSAMGVSFVHG
FT                   SNDGQKGIGLIMLVLIGIVPAKFVLDVNSTTYQIDRTRDAASHLSAFYHRNEATLGEFL
FT                   ALSRGGNGADLPKTFRCDPKLTMPTIAALQDDLRGVTNYADLSADKRIDVRRYLLCLDD
FT                   TAKKVARLEGLPARERADLQRLRGDLTTTTEYAPLWVIVAVALALGIGTMVGWRRVVLT
FT                   VGEKIGKQGMTYAQGMAAQVTAVGAIGLANVFSLPVSTTHVLSSGVAGTMVANNSGLQG
FT                   GTVRTILMAWVLTLPASMLLSAGLFWVGTLLAA"
FT   misc_feature    complement(join(15695..15760,15860..15925,15971..16036,
FT                   16412..16462,16493..16543,16622..16687,16718..16783,
FT                   16805..16870,16931..16996,17057..17122))
FT                   /note="10 probable transmembrane helices predicted for
FT                   BP1014 by TMHMM2.0 at aa 10-32, 52-74, 94-116, 123-145,
FT                   155-177, 203-220, 230-247, 372-394, 409-431 and 464-486"
FT   misc_feature    complement(15716..16063)
FT                   /note="HMMPfam hit to PF01384, Phosphate transporter
FT                   family"
FT   misc_feature    complement(16436..17065)
FT                   /note="HMMPfam hit to PF01384, Phosphate transporter
FT                   family"
FT   misc_feature    complement(17078..17152)
FT                   /note="Signal peptide predicted for BP1014 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.663) with cleavage site
FT                   probability 0.449 between residues 25 and 26"
FT   CDS             17337..17987
FT                   /transl_table=11
FT                   /gene="mog"
FT                   /gene_synonym="mogA"
FT                   /gene_synonym="chlG"
FT                   /locus_tag="BP1015"
FT                   /product="molybdopterin biosynthesis protein"
FT                   /note="Similar to Escherichia coli molybdopterin
FT                   biosynthesis Mog protein Mog or MogA or ChlG or B0009 or
FT                   Z0009 or Ecs0009 SW:MOG_ECOLI (P28694) (195 aa) fasta
FT                   scores: E(): 4e-47, 68.557% id in 194 aa, and to
FT                   Haemophilus influenzae molybdopterin biosynthesis Mog
FT                   protein Mog or MogA or Hi0336 SW:MOG_HAEIN (P44645) (197
FT                   aa) fasta scores: E(): 8e-45, 65.803% id in 193 aa"
FT                   /db_xref="GOA:Q7VZA7"
FT                   /db_xref="HSSP:1DI6"
FT                   /db_xref="InterPro:IPR008284"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZA7"
FT                   /protein_id="CAE41316.1"
FT                   /translation="MSTSTSPSAPLVRSHPDELLIGLVSISDRASTGVYQDQGLPSLRD
FT                   WLGTALTSPWQAVERLIPDEPAAISAAMVDLVDGCGCDLVLTTGGTGPARRDCTPEATL
FT                   AVATKEMPGFGEQMRQISLRFVPTAILSRQVAVIRETAGHAALIINLPGQPKAIRETLE
FT                   GLKDADGAVLAAGVFAAVPYCIDLIGGPYAETDPAVIKAFRPKSALRQPAARQ"
FT   misc_feature    17586..17627
FT                   /note="ScanRegExp hit to PS01078, Molybdenum cofactor
FT                   biosynthesis proteins signature 1. Confirmed by InterPro
FT                   eMOTIF pattern match."
FT   CDS             18041..18376
FT                   /transl_table=11
FT                   /locus_tag="BP1016"
FT                   /product="putative exported protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein Pa2759 TR:Q9I084 (EMBL:AE004704) (104 aa) fasta
FT                   scores: E(): 1.1, 27.027% id in 111 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZA6"
FT                   /protein_id="CAE41317.1"
FT                   /translation="MKARFALLALGLALAGCANVKDIRDREPAFYGSPQRSAQEYAACV
FT                   SAAWKGLGVPVEQREIRNGYELVSRGSLGVDAVLTTTTWQGKTDASLSTRLPQSGQQLV
FT                   DAANLCL"
FT   misc_feature    18041..18100
FT                   /note="Signal peptide predicted for BP1016 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.999) with cleavage site
FT                   probability 0.939 between residues 20 and 21"
FT   misc_feature    18059..18091
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             18373..19233
FT                   /transl_table=11
FT                   /locus_tag="BP1017"
FT                   /product="putative peptidase"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein Pa3787 TR:Q9HXK8 (EMBL:AE004797) (282 aa) fasta
FT                   scores: E(): 1.9e-72, 68.978% id in 274 aa, and to Xylella
FT                   fastidiosa hypothetical protein Xf0987 TR:Q9PEP1
FT                   (EMBL:AE003937) (285 aa) fasta scores: E(): 5.5e-25,
FT                   38.462% id in 247 aa"
FT                   /db_xref="GOA:Q7VZA5"
FT                   /db_xref="InterPro:IPR002886"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZA5"
FT                   /protein_id="CAE41318.1"
FT                   /translation="MSAAARLWRGAWLALALLAAQGAQAQGYISRKLSAPVPGGVAVVD
FT                   LGQAAQAPEVTYRGRPVMVLREADGPWIAVVGIPLAARPGSEAISVRGSGGAVRSIAFD
FT                   IGAKKYTAQHIKLKNQRQVTPNPDDLKRIERELAEQTDAYRIFRAGVTPSNVLLDRPVP
FT                   GRLSSPFGLRRFFNGQERNPHSGLDFAAAAGTPIKAPAAGRVVLVGDYFFNGRTVFVDH
FT                   GQGFISMFCHMSEIDVKVGDEVPRGGVVGKVGATGRATGPHLHWNISLNDARVDPAIFI
FT                   GAFKP"
FT   misc_feature    18373..18447
FT                   /note="Signal peptide predicted for BP1017 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.989 between residues 25 and 26"
FT   misc_feature    18964..19212
FT                   /note="HMMPfam hit to PF01551, Peptidase family M23/M37"
FT   CDS             complement(19250..19531)
FT                   /transl_table=11
FT                   /locus_tag="BP1018"
FT                   /product="hypothetical protein"
FT                   /note="no significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZA4"
FT                   /protein_id="CAE41319.1"
FT                   /translation="MTDKHETLRDAADRLNSARRAFGLGEDGLRLLRRSREAFINSLRN
FT                   TGLTYAQAQVKYDNCLDEQQQLHQQAIHELQYAERLHRQLLAELEQTA"
FT   CDS             complement(19605..19868)
FT                   /transl_table=11
FT                   /gene="infA"
FT                   /locus_tag="BP1019"
FT                   /product="translation initiation factor IF-1"
FT                   /note="Similar to Escherichia coli translation initiation
FT                   factor IF-1 InfA or B0884 or Z1228 or Ecs0969 TR:BAB34392
FT                   (EMBL:Y00373) (72 aa) fasta scores: E(): 1.2e-12, 58.333%
FT                   id in 72 aa, and to Rhizobium meliloti probable translation
FT                   initiation factor IF-1 protein TR:CAC45186 (EMBL:AL591784)
FT                   (72 aa) fasta scores: E(): 1.7e-14, 61.111% id in 72 aa.
FT                   Also similar to BP3637, 54.167% identity (54.167% ungapped)
FT                   in 72 aa overlap."
FT                   /db_xref="GOA:Q7VZA3"
FT                   /db_xref="InterPro:IPR004368"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VZA3"
FT                   /protein_id="CAE41320.1"
FT                   /translation="MAKEELIELNGIVDEVLPDSRYRVKLDNGIEVGAYASGRMRKHRI
FT                   RILAGDRVTLEMSPYDLTKGRINFRHKDERSGPPSRPPQHRR"
FT   misc_feature    complement(19653..19865)
FT                   /note="HMMPfam hit to PF00575, S1 RNA binding domain"
FT   repeat_region   20010..20041
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   20010..21062
FT   CDS             20112..21062
FT                   /transl_table=11
FT                   /locus_tag="BP1020"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTA3"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTA3"
FT                   /protein_id="CAE41321.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS"
FT   misc_feature    20370..20435
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   misc_feature    20493..21026
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   repeat_region   complement(21031..21062)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(21361..22098)
FT                   /transl_table=11
FT                   /gene="fliA"
FT                   /gene_synonym="flaD"
FT                   /locus_tag="BP1021"
FT                   /product="RNA polymerase sigma factor for flagellar operon"
FT                   /note="Similar to Escherichia coli RNA polymerase sigma
FT                   factor for flagellar operon FliA or FlaD or B1922 or Z3012
FT                   or Ecs2661 SW:FLIA_ECOLI (P31804) (239 aa) fasta scores:
FT                   E(): 9.2e-37, 52.466% id in 223 aa, and to Yersinia
FT                   enterocolitica RNA polymerase sigma factor for flagellar
FT                   operon FliA SW:FLIA_YEREN (P52621) (230 aa) fasta scores:
FT                   E(): 1.1e-38, 52.402% id in 229 aa"
FT                   /db_xref="GOA:Q7VZA2"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZA2"
FT                   /protein_id="CAE41322.1"
FT                   /translation="MPNPEDSLVQYAPLVRKLALQLLARLPSSVQLDDLVQAGMIGLLD
FT                   AVRRYQESPDAQFETYATARIRGAMLDELRSQDWLPRSVRSKSRRIETAIQRKEQELMR
FT                   APSEGEIAEELGVPLAEYQGMLADAQGVQILHYEDFNTDGDSDSPWAESSAEHADPLDA
FT                   LLAGDLRRALIDAIDGLPEREKLLLSLCYEQGLNLKEIGAVLNVTEARVCQLRAQATAR
FT                   IRARLKEQAWARLPTAHHLAQVV"
FT   misc_feature    complement(21424..22095)
FT                   /note="HMMPfam hit to PF00140, Sigma-70 factor"
FT   misc_feature    complement(21448..21513)
FT                   /note="Predicted helix-turn-helix motif with score 1172
FT                   (+3.18 SD) at aa 196-217, sequence LNLKEIGAVLNVTEARVCQLRA"
FT   misc_feature    complement(21958..21999)
FT                   /note="ScanRegExp hit to PS00715, Sigma-70 factors family
FT                   signature 1. Confirmed by InterPro eMOTIF pattern match."
FT   CDS             22534..22857
FT                   /transl_table=11
FT                   /gene="flhD"
FT                   /gene_synonym="flbB"
FT                   /gene_synonym="frlA"
FT                   /locus_tag="BP1022"
FT                   /product="flagellar transcriptional activator FlbB"
FT                   /note="Identical to Bordetella bronchiseptica FrlA
FT                   TR:Q44730 (EMBL:U17998) (107 aa) fasta scores: E():
FT                   2.5e-39, 98.131% id in 107 aa, and similar to Escherichia
FT                   coli flagellar transcriptional activator FlhD or FlbB or
FT                   B1892 SW:FLHD_ECOLI (P11164) (119 aa) fasta scores: E():
FT                   1.1e-13, 48.936% id in 94 aa"
FT                   /db_xref="GOA:Q7VZA1"
FT                   /db_xref="InterPro:IPR007911"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VZA1"
FT                   /protein_id="CAE41323.1"
FT                   /translation="MKTADSSLLADIREVNLSYLLLAQRMLRDDYAASMFRLGFSNEVA
FT                   DILMRLSPAQLVKLANSSSLLCRFRFDDYSLLSALTQDVLGGALQQAHATILLARQPVE
FT                   ELA"
FT   CDS             22892..23452
FT                   /transl_table=11
FT                   /gene="flhC"
FT                   /gene_synonym="flaI"
FT                   /gene_synonym="frlB"
FT                   /locus_tag="BP1023"
FT                   /product="flagellar transcriptional activator FlhC"
FT                   /note="Identical to Bordetella bronchiseptica FrlB
FT                   TR:Q44731 (EMBL:U17998) (186 aa) fasta scores: E():
FT                   1.5e-76, 99.462% id in 186 aa, and similar to Escherichia
FT                   coli flagellar transcriptional activator FlhC or FlaI or
FT                   B1891 or Z2945 or Ecs2601 SW:FLHC_ECOLI (P11165) (192 aa)
FT                   fasta scores: E(): 4e-38, 57.059% id in 170 aa"
FT                   /db_xref="GOA:Q7VZA0"
FT                   /db_xref="InterPro:IPR007944"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZA0"
FT                   /protein_id="CAE41324.1"
FT                   /translation="MATKSVSQEADEILLASSMITLGARLQVLQAETGLSHDRLARLYR
FT                   EIRGCSPPKGMLPFSVDWFMTWLPNIHSSLFYNVYTFLNQRTSSQGIRAVIDAYRLYLE
FT                   HAPADAAEPVLSFTRAWMLVRFFDGGMLQLSGCRQCGGHFIAHAHDPQTDFVCAICRPP
FT                   PRAGKTRAAARARAGQLAAPARP"
FT   CDS             23573..24448
FT                   /transl_table=11
FT                   /gene="motA"
FT                   /locus_tag="BP1024"
FT                   /product="chemotaxis protein MotA"
FT                   /note="Similar to Escherichia coli chemotaxis MotA protein
FT                   MotA or B1890 SW:MOTA_ECOLI (P09348) (295 aa) fasta scores:
FT                   E(): 2.9e-60, 55.439% id in 285 aa, and to Salmonella
FT                   typhimurium chemotaxis MotA protein MotA SW:MOTA_SALTY
FT                   (P55891) (295 aa) fasta scores: E(): 9e-63, 56.842% id in
FT                   285 aa"
FT                   /db_xref="GOA:Q7VZ99"
FT                   /db_xref="InterPro:IPR000540"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ99"
FT                   /protein_id="CAE41325.1"
FT                   /translation="MLIVIGYAVVILAVVGSFIGLGGHLGALYQPFELTLIAGAAVGAF
FT                   MAGNSRKSLGLVAKAIPEAFRSSPYSKDVYMELMALLYVLLNKARREGLMAIESHIEDP
FT                   LSSPIFNEYPRIMKDAKLMEFITDYLRIMISGNMSSFEIETLMDEEIETYRHEREVPTH
FT                   ALQQVADALPAFGIVAAVLGVIKALAAVDQPPAILGDLISKAMVGTFLGVLLAYGFVAP
FT                   MAARIERRTSESVKVLECIKVTLLASMNGYPPQLAVEFGRKVLFSAVRPSFGELEEHVR
FT                   QAKSAATGRA"
FT   misc_feature    join(23576..23644,23654..23722,24074..24142,24185..24253)
FT                   /note="4 probable transmembrane helices predicted for
FT                   BP1024 by TMHMM2.0 at aa 2-24, 28-50, 168-190 and 205-227"
FT   misc_feature    24185..24238
FT                   /note="ScanRegExp hit to PS01307, Flagellar motor protein
FT                   motA family signature. Confirmed by InterPro eMOTIF pattern
FT                   match."
FT   CDS             24461..25408
FT                   /transl_table=11
FT                   /gene="motB"
FT                   /locus_tag="BP1025"
FT                   /product="chemotaxis protein MotB"
FT                   /note="Similar to Escherichia coli chemotaxis MotB protein
FT                   MotB or B1889 or Z2943 or Ecs2599 SW:MOTB_ECOLI (P09349)
FT                   (308 aa) fasta scores: E(): 8.5e-54, 57.500% id in 280 aa,
FT                   and to Salmonella typhimurium chemotaxis MotB protein MotB
FT                   SW:MOTB_SALTY (P55892) (309 aa) fasta scores: E(): 9.8e-54,
FT                   58.156% id in 282 aa"
FT                   /db_xref="GOA:Q7VZ98"
FT                   /db_xref="InterPro:IPR006665"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ98"
FT                   /protein_id="CAE41326.1"
FT                   /translation="MSTVNNHRVVIRRRKVRRGGHHGGSWKIAYADFITAMMAFFLVMW
FT                   LISIVPREELKGIAEYFRMPLRVALTGGPSSSAETSAIPGGGQDPLRSQGDVRRAEGNR
FT                   VEAQPMGDAERRDRHRLERLKVRLENLIEESPVLKNFRPQLLIDMTTEGLRIQIVDNQN
FT                   RPMFATGSADVQPYMRDILRELGPVLNDLPNKISIAGHTDASQYARGERAYSNWELSAD
FT                   RANASRQELVAGGMHEGKVLRIQGLASSMSLVKDDPFAAVNRRISLVVLNASTQRRIEN
FT                   ENAAAADVNARDAQGVGAALAGQLAASGSDGGAR"
FT   misc_feature    24542..24610
FT                   /note="1 probable transmembrane helix predicted for BP1025
FT                   by TMHMM2.0 at aa 28-50"
FT   misc_feature    24956..25252
FT                   /note="HMMPfam hit to PF00691, OmpA family"
FT   CDS             join(25423..25500,25504..25803)
FT                   /pseudo
FT                   /transl_table=11
FT                   /gene="cheY"
FT                   /locus_tag="BP1026"
FT                   /product="chemotaxis protein CheY (Pseudogene)"
FT                   /note="Pseudogene. This CDS contains an in-frame TGA stop
FT                   codon. The sequence has been checked and believed to be
FT                   correct. Similar to Escherichia coli chemotaxis protein
FT                   CheY or B1882 or Z2936 or Ecs2592 SW:CHEY_ECOLI (P06143)
FT                   (128 aa) fasta scores: E(): 8.3e-09, 40.000% id in 110 aa,
FT                   and to Caulobacter crescentus chemotaxis protein CheyI or
FT                   Cc0432 TR:Q9AB03 (EMBL:AE005716) (121 aa) fasta scores:
FT                   E(): 4.1e-15, 45.614% id in 114 aa"
FT                   /db_xref="PSEUDO:CAE41327.1"
FT   variation       25501..25503
FT                   /note="in-frame TGA stop codon in pertussis; TGG in
FT                   parapertussis and bronchiseptica"
FT   misc_feature    25510..25770
FT                   /note="HMMPfam hit to PF00072, Response regulator receiver
FT                   domain"
FT   CDS             25830..27887
FT                   /transl_table=11
FT                   /gene="cheA"
FT                   /locus_tag="BP1028"
FT                   /product="chemotaxis protein CheA"
FT                   /note="Similar to Escherichia coli chemotaxis protein CheA
FT                   or B1888 SW:CHEA_ECOLI (P07363) (654 aa) fasta scores: E():
FT                   8.2e-86, 61.21% id in 673 aa, and to Salmonella typhimurium
FT                   chemotaxis protein CheA SW:CHEA_SALTY (P09384) (671 aa)
FT                   fasta scores: E(): 9.8e-94, 62.16% id in 674 aa"
FT                   /db_xref="GOA:Q7VZ97"
FT                   /db_xref="HSSP:1I5N"
FT                   /db_xref="InterPro:IPR008207"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ97"
FT                   /protein_id="CAE41328.1"
FT                   /translation="MSSGLDLSQFYETFFDEADELLAQMEQLLLELDVGAPDIEQLNAI
FT                   FRAAHSIKGGAATFGCFQKLAGTTHLLENLLDAIRRGEMGLRADMVDIFLETKDVLKSQ
FT                   LDAYRASEEPEDAVFERICAVLRQLALEGGQAPAAAAPAPVAAPEPDPEPEPAPQPAAA
FT                   STAAGLPLRVRFSKVSDKDAQSLLEEMGNLGDVRASERAGQTLTVWVDTTCSPDDIEAV
FT                   CCFIIDADQLEIAREAEPAHAPAQAAVAAAPDAAATPTPAPAPAAAQAAEPARAARPSI
FT                   APAHADKESTSIRVGVEKVDQVINLVGELVITQAMLAQTASTLDPVLHDRLLNGMEQLE
FT                   RNARDLQEAVMSIRMMPMDYVFSCFPRLVRDIAGKMGKQIELQTYGRATELDKSLIERI
FT                   IDPLTHLVRNSLDHGIETPDKRVAAGKEPVGQLVLSAQHNGGNIAIEVSDDGGGLSRER
FT                   ILRKAVAQGLTVNENSPDDEIWQLIFAPGFSTADQVTDISGRGVGMDVVRRNIQDMGGH
FT                   VQLSSVPGQGTTTRIVLPLTLAILDGMSVRVGEETFILPLNHVTESLQPQVDQIYSVAG
FT                   NERVMQVRGEYLPLVEMHRVFSVGQAQADPTQAIAVIMQAEERRFALLVDHLVGQHQVV
FT                   VKNLESNYRKVPGISAATILGDGSVALIVDVLALARANREKWSQPEAILN"
FT   misc_feature    25848..26165
FT                   /note="HMMPfam hit to PF01627, Hpt domain"
FT   misc_feature    25869..25895
FT                   /note="ScanRegExp hit to PS00039, DEAD-box subfamily
FT                   ATP-dependent helicases signature."
FT   misc_feature    27021..27443
FT                   /note="HMMPfam hit to PF02518, Histidine kinase-, DNA
FT                   gyrase B-, phytochrome-like ATPase"
FT   misc_feature    27447..27851
FT                   /note="HMMPfam hit to PF01584, CheW-like domain"
FT   CDS             27902..28402
FT                   /transl_table=11
FT                   /gene="cheW"
FT                   /locus_tag="BP1029"
FT                   /product="chemotaxis protein CheW"
FT                   /note="Similar to Escherichia coli chemotaxis protein CheW
FT                   or B1887 or Z2941 or Ecs2597 SW:CHEW_ECOLI (P07365) (167
FT                   aa) fasta scores: E(): 1.3e-41, 74.83% id in 155 aa, and to
FT                   Burkholderia pseudomallei (Pseudomonas pseudomallei)
FT                   chemotaxis protein CheW TR:O05183 (EMBL:U92493) (175 aa)
FT                   fasta scores: E(): 7e-43, 72.56% id in 164 aa"
FT                   /db_xref="GOA:Q7VZ96"
FT                   /db_xref="InterPro:IPR002545"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ96"
FT                   /protein_id="CAE41329.1"
FT                   /translation="MAAKPHTQATRAEDVGNEFLVFTLGEEEYGIDILKVQEIRGYDAA
FT                   TVTRIANVPSFIKGVTNLRGIIVPIVDLRIKFNLGSVEYNEQTVVIILNLDRRVVGIVV
FT                   DGVSDVLMLNAAQVRPAPEFGATLSTEYLTGLGTVDERMLILVDIEKLMTSDEMALVEK
FT                   VAS"
FT   misc_feature    27947..28372
FT                   /note="HMMPfam hit to PF01584, CheW-like domain"
FT   misc_feature    28464..28562
FT                   /note="Signal peptide predicted for BP1030 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.997) with cleavage site
FT                   probability 0.656 between residues 33 and 34"
FT   CDS             28476..30182
FT                   /transl_table=11
FT                   /gene="tsr"
FT                   /gene_synonym="cheD"
FT                   /locus_tag="BP1030"
FT                   /product="methyl-accepting chemotaxis protein I"
FT                   /note="Similar to Escherichia coli methyl-accepting
FT                   chemotaxis protein I Tsr or CheD or B4355 SW:MCP1_ECOLI
FT                   (P02942) (551 aa) fasta scores: E(): 3e-64, 46.71% id in
FT                   533 aa, and to Salmonella typhimurium methyl-accepting
FT                   chemotaxis protein II TaR SW:MCP2_SALTY (P02941) (553 aa)
FT                   fasta scores: E(): 1.2e-63, 45.87% id in 558 aa. Also
FT                   similar to BP1384 (64.476% identity in 563 aa overlap),
FT                   BP1385 (61.649% identity in 558 aa overlap), BP2268
FT                   (56.415% identity in 491 aa overlap), and to BP1591
FT                   (44.216% identity in 536 aa overlap),"
FT                   /db_xref="GOA:Q7VZ95"
FT                   /db_xref="InterPro:IPR003660"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ95"
FT                   /protein_id="CAE41330.1"
FT                   /translation="MRKFLANLSIRGSLLGVLAFFSFMLVVGAALGVLSLRVSNDTLQG
FT                   VKQTQDVADAMDRVVNSYKDALNGLGRAAASHYGAIVSAIGQPVQVEQGLGSEAAGLLQ
FT                   RAKASLNRAETEYEYYKGLARPASAADSLKEVENAFEALVGQGLHPLAAALEKGDMAGY
FT                   QSHAQNVLDALEGRFSGAIAAFDFWRASELLDAHEVAETRYRFVLAAVAAGGVLAALLV
FT                   FSTYLFLRRRVLQPLREVGQHFDKIAAGDLTARVDVRNSNEIGQLFAGLKRMEESLTRT
FT                   VAAVRRGVDEINVGSREISAGNTDLSSRTEEQAASLEETAASMEQLASTVKQNADNARQ
FT                   ANQLAGVASDVAERGGSAVSEVVTTMQDISASSRKISEIVSVIDGIAFQTNILALNAAV
FT                   EAARAGEQGKGFAVVAGEVRSLAQRSAQAAKEIKVLIEDSVDKVGTGSQQVERAGATMQ
FT                   EIVASVKRVTDIMGEISAASEEQSSGIEQVNRAVSQMDEVTQQNAALVEEAAAAAGSLQ
FT                   EQAQRLAEAVAVFKINTGEVIEVPAHQLGSRQAPGAREAALARDDALALGH"
FT   misc_feature    join(28521..28589,29091..29159)
FT                   /note="2 probable transmembrane helices predicted for
FT                   BP1030 by TMHMM2.0 at aa 20-42 and 210-232"
FT   misc_feature    29106..29315
FT                   /note="HMMPfam hit to PF00672, HAMP domain"
FT   misc_feature    29601..29783
FT                   /note="HMMPfam hit to PF00015, Methyl-accepting chemotaxis
FT                   protein (MCP) signaling domain"
FT   CDS             join(30191..30610,30609..31049)
FT                   /pseudo
FT                   /transl_table=11
FT                   /gene="cheR"
FT                   /gene_synonym="cheX"
FT                   /locus_tag="BP1031"
FT                   /product="chemotaxis protein methyltransferase
FT                   (Pseudogene)"
FT                   /EC_number="2.1.1.80"
FT                   /note="Pseudogene. This CDS appears to have a frameshift
FT                   mutation following codon 140. The frameshift occurs within
FT                   a polymeric tract of (CG)3. The sequence has been checked
FT                   and believed to be correct. Similar to Escherichia coli
FT                   chemotaxis protein methyltransferase CheR or CheX or B1884
FT                   SW:CHER_ECOLI (P07364) (286 aa) fasta scores: E(): 1.1e-64,
FT                   60.83% id in 263 aa, and to Salmonella typhimurium
FT                   chemotaxis protein methyltransferase CheR SW:CHER_SALTY
FT                   (P07801) (288 aa) fasta scores: E(): 1.6e-63, 58.18% id in
FT                   275 aa"
FT                   /db_xref="PSEUDO:CAE41331.1"
FT   misc_feature    join(30272..30613,30612..31028)
FT                   /note="HMMPfam hit to PF01739, CheR methyltransferase"
FT   variation       30604..30609
FT                   /note="(CG)3 in pertussis; (CG)4 in parapertussis in
FT                   bronchiseptica"
FT   CDS             31046..32098
FT                   /transl_table=11
FT                   /gene="cheB"
FT                   /locus_tag="BP1032"
FT                   /product="protein-glutamate methylesterase"
FT                   /EC_number="3.1.1.61"
FT                   /note="Similar to Escherichia coli protein-glutamate
FT                   methylesterase CheB or B1883 SW:CHEB_ECOLI (P07330) (349
FT                   aa) fasta scores: E(): 5.3e-88, 71.22% id in 344 aa, and to
FT                   Salmonella typhimurium protein-glutamate methylesterase
FT                   CheB SW:CHEB_SALTY (P04042) (349 aa) fasta scores: E():
FT                   1.3e-89, 71.8% id in 344 aa"
FT                   /db_xref="GOA:Q7VZ94"
FT                   /db_xref="InterPro:IPR001789"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VZ94"
FT                   /protein_id="CAE41332.1"
FT                   /translation="MKKIKVLCVDDSALVRGLMTEIINSHPDMEVVATAPDPLVARELI
FT                   KKHNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTERGGEITLRALELGAIDF
FT                   VTKPKLGIRDGLIEYSEVIADKIRAASRARLRALAPASHAAPLRLRSPFASSEKLVIVG
FT                   ASTGGTEAIREVLQPLPADSPAILITQHMLAGFTRSFAQRLDALCAVTVREASDGERVL
FT                   PGHVYLAPGGETHMRLGRSGANYVIGLQASEPVNRHRPSVDVLFHSAAEAAGGNAIGVI
FT                   LTGMGKDGAAGLLAMKRAGARTMAQDEASCVVFGMPREAIALGAADEVVPLADISERIL
FT                   TRLGDRGHRV"
FT   misc_feature    31055..31405
FT                   /note="HMMPfam hit to PF00072, Response regulator receiver
FT                   domain"
FT   misc_feature    31520..32071
FT                   /note="HMMPfam hit to PF01339, CheB methylesterase"
FT   CDS             32151..32540
FT                   /transl_table=11
FT                   /gene="cheY"
FT                   /locus_tag="BP1033"
FT                   /product="chemotaxis protein CheY"
FT                   /note="Similar to Escherichia coli chemotaxis protein CheY
FT                   or B1882 or Z2936 or Ecs2592 TR:AAG56872 (EMBL:K02175) (129
FT                   aa) fasta scores: E(): 5.1e-36, 78.73% id in 127 aa, and to
FT                   Burkholderia pseudomallei (Pseudomonas pseudomallei) CheY
FT                   TR:P94342 (EMBL:U78087) (131 aa) fasta scores: E():
FT                   1.9e-37, 80.31% id in 127 aa"
FT                   /db_xref="GOA:Q7VZ93"
FT                   /db_xref="HSSP:1JBE"
FT                   /db_xref="InterPro:IPR001789"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ93"
FT                   /protein_id="CAE41333.1"
FT                   /translation="MVDKGMKILVVDDFPTMRRIIRNLLKELGFENVDEAEDGAIGLEK
FT                   LRNGAFQFVVSDWNMPNLDGLEMLKQIRADAALKSLPVLMVTAEAKKENIVAAAQAGAN
FT                   GYVVKPFTAATLEEKLNKIFEKLAG"
FT   misc_feature    32166..32510
FT                   /note="HMMPfam hit to PF00072, Response regulator receiver
FT                   domain"
FT   CDS             32549..33181
FT                   /transl_table=11
FT                   /gene="cheZ"
FT                   /locus_tag="BP1034"
FT                   /product="chemotaxis protein CheZ"
FT                   /note="Similar to Escherichia coli chemotaxis protein CheZ
FT                   or B1881 SW:CHEZ_ECOLI (P07366) (214 aa) fasta scores: E():
FT                   2.7e-42, 67.5% id in 200 aa, and to Salmonella typhimurium
FT                   chemotaxis protein CheZ SW:CHEZ_SALTY (P07800) (214 aa)
FT                   fasta scores: E(): 3.6e-42, 66% id in 200 aa"
FT                   /db_xref="GOA:Q7VZ92"
FT                   /db_xref="InterPro:IPR007439"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ92"
FT                   /protein_id="CAE41334.1"
FT                   /translation="MNATDTGMQADPTDLIQRIASLTRMLRDSMRELGLDQAIKDAAEA
FT                   IPDARDRLRYVAQMTEQAANRVLNATEAAGPIQDGMARGAQALDERWQQWYDQPLELPQ
FT                   ARALVQDTRAFLAAVPQHTQQTQAKLMEIVMAQDFQDLTGQVIMRMMDVVGAIERELLQ
FT                   VLLDNVPQERRDEANSLLNGPQVNPGGKADVVTSQDQVDDLLASLGF"
FT   repeat_region   complement(33252..34482)
FT                   /note="Insertion sequence"
FT   CDS             complement(33281..34297)
FT                   /transl_table=11
FT                   /locus_tag="BP1035"
FT                   /product="transposase for IS1663"
FT                   /note="Similar to Neisseria meningitidis putative
FT                   invertase/transposase Nma1800 TR:Q9JTF3 (EMBL:AL162757)
FT                   (318 aa) fasta scores: E(): 2e-17, 28.48% id in 316 aa and
FT                   Acinetobacter spSE19 pilin inverting protein ChnY TR:Q9F7E1
FT                   (EMBL:AF282240) (324 aa) fasta scores: E(): 8.2e-50,
FT                   47.516% id in 322 aa"
FT                   /db_xref="GOA:Q7VZ91"
FT                   /db_xref="InterPro:IPR002525"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ91"
FT                   /protein_id="CAE41335.1"
FT                   /translation="MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKCKTKVVVN
FT                   TAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQAATALPQVRVSLVNPAQARDFAKA
FT                   LALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELNRKE
FT                   KSQFSPSAPVVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQ
FT                   AGNAILAVMHNRHIDSAQSLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAA
FT                   LVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLCFGVLKNRIPYQPNYAMNG"
FT   misc_feature    complement(33413..33745)
FT                   /note="HMMPfam hit to PF02371, Transposase
FT                   IS116/IS110/IS902 family"
FT   misc_feature    complement(33758..34045)
FT                   /note="HMMPfam hit to PF01548, Transposase"
FT   tRNA            complement(34533..34609)
FT                   /note="tRNA Asp anticodon GTC, Cove score 95.07"
FT   tRNA            complement(34645..34720)
FT                   /note="tRNA Glu anticodon TTC, Cove score 60.10"
FT   tRNA            complement(34752..34827)
FT                   /note="tRNA Ala anticodon GGC, Cove score 86.46"
FT   CDS             35086..36135
FT                   /transl_table=11
FT                   /locus_tag="BP1036"
FT                   /product="putative aldo/keto reductase"
FT                   /note="Similar to Rhizobium meliloti putative aldoketo
FT                   reductase protein Smb20500 TR:CAC48882 (EMBL:AL603643) (331
FT                   aa) fasta scores: E(): 7.8e-35, 39.26% id in 326 aa, and to
FT                   Agrobacterium tumefaciens Agr_l_1936p TR:AAK89542
FT                   (EMBL:AE008296) (332 aa) fasta scores: E(): 2e-31, 36.44%
FT                   id in 332 aa"
FT                   /db_xref="GOA:Q7VZ90"
FT                   /db_xref="HSSP:1HW6"
FT                   /db_xref="InterPro:IPR001395"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ90"
FT                   /protein_id="CAE41336.1"
FT                   /translation="MSTSFPTQRLGATDMRITRVGFGAWAIGGPGWSVGWGAQDDGESI
FT                   RAIRHAVNRGINWIDTAAVYGLGHSESLVGRALAGMPPSERPYVFTKGGLVGSPADPMA
FT                   KPRRIGAPDSLRREVEASLRRLGVEAIDLYQMHWPAGDGTPLEVYWQALLDLRQAGKVR
FT                   HVGLSNHNLAQVQAAEQLGHVETLQPPFSAIRRESAADLLPWCASHDTGVIVYSPMQSG
FT                   LLSGAFSAERAAALPEGDWRARNAEFMAPRLAANLEFADALKPIAQHHGASVGAIAVAW
FT                   ALAWPGVTGAIAGARSAEQVDGWLGAATLELDSDDMRQIADALARTGVGGGPLLPPPDE
FT                   AALALTARP"
FT   misc_feature    35416..35613
FT                   /note="HMMPfam hit to PF00248, Aldo/keto reductase family"
FT   CDS             complement(join(36132..36707,36709..37776))
FT                   /pseudo
FT                   /transl_table=11
FT                   /gene="lnt"
FT                   /gene_synonym="cutE"
FT                   /locus_tag="BP1037"
FT                   /product="putative apolipoprotein N-acyltransferase
FT                   (Pseudogene)"
FT                   /EC_number="2.3.1.-"
FT                   /note="Pseudogene. This CDS appears to have a frameshift
FT                   mutation following codon 356. Similar to Escherichia coli
FT                   apolipoprotein N-acyltransferase Lnt or CutE or B0657
FT                   SW:LNT_ECOLI (P23930) (512 aa) fasta scores: E(): 5.6e-18,
FT                   30.76% id in 533 aa, and to Neisseria meningitidis
FT                   apolipoprotein N-acyltransferase, putative Nmb0713
FT                   TR:Q9K0A2 (EMBL:AE002426) (524 aa) fasta scores: E():
FT                   4.3e-20, 34.63% id in 537 aa"
FT                   /db_xref="PSEUDO:CAE41337.1"
FT   variation       complement(36710)
FT                   /note="A in pertussis; (-) deleted in parapertussis and
FT                   bronchiseptica"
FT   CDS             complement(37773..38660)
FT                   /transl_table=11
FT                   /gene="corC"
FT                   /locus_tag="BP1038"
FT                   /product="magnesium and cobalt efflux protein"
FT                   /note="Similar to Salmonella typhimurium magnesium and
FT                   cobalt efflux protein CorC SW:CORC_SALTY (Q9R874) (292 aa)
FT                   fasta scores: E(): 7.9e-39, 40.95% id in 293 aa, and to
FT                   Neisseria meningitidis hypothetical protein Nma0716
FT                   TR:Q9JVS6 (EMBL:AL162754) (274 aa) fasta scores: E():
FT                   1.5e-43, 46.44% id in 267 aa"
FT                   /db_xref="InterPro:IPR005170"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ89"
FT                   /protein_id="CAE41338.1"
FT                   /translation="MSDPYPATEAHAQRAAKSPPKSLLDRLLSLVRREPEDREGIKAIL
FT                   EAAHERELLDAESYAMIKGALAVSERTVADIMVPRSRMDLLDISQPLPQLLATIIETAH
FT                   SRFPVYEDDRDNIIGILLAKDLLRYMLEPALDIRSLVRPAVFIPEVKRLNVLLREFRAS
FT                   RNHLAIVIDEHGGISGLVTMEDVLEQIVGDIEDEFDEDEEESIFPEGENQWRLTASTDI
FT                   SHFNATFATDLPDDEYDSVGGWLGGQLGRIPRRGDSADHDGLHIEVVRADARRALWLRV
FT                   RRNAGAQPPASAAE"
FT   misc_feature    complement(38088..38249)
FT                   /note="HMMPfam hit to PF00571, CBS domain"
FT   misc_feature    complement(38268..38432)
FT                   /note="HMMPfam hit to PF00571, CBS domain"
FT   CDS             complement(38801..39250)
FT                   /transl_table=11
FT                   /locus_tag="BP1039"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Xylella fastidiosa hypothetical protein
FT                   Xf0903 TR:Q9PEX5 (EMBL:AE003930) (161 aa) fasta scores:
FT                   E(): 2.1e-19, 45.8% id in 155 aa, and to Pseudomonas
FT                   aeruginosa hypothetical protein Pa3982 TR:Q9HX37
FT                   (EMBL:AE004816) (160 aa) fasta scores: E(): 6.9e-18, 46.35%
FT                   id in 151 aa"
FT                   /db_xref="GOA:Q7VZ88"
FT                   /db_xref="InterPro:IPR002036"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VZ88"
FT                   /protein_id="CAE41339.1"
FT                   /translation="MQYGVADARLPRWRLRRWVQYALAGAAGDGHAGLAGAELGLRLVG
FT                   LAEGRRLNREFRGRDYATNVLTFEYGTGPDGVARGDIVVCVPVLAREAREQRKTLLDHA
FT                   AHLTVHGTLHALGYDHIKAGEARRMEALETAVLARMGIADPYLAA"
FT   misc_feature    complement(38852..39121)
FT                   /note="HMMPfam hit to PF02130, Uncharacterized protein
FT                   family UPF0054"
FT   CDS             complement(39264..40286)
FT                   /transl_table=11
FT                   /locus_tag="BP1040"
FT                   /product="PhoH-like protein"
FT                   /note="Similar to Escherichia coli PhoH-like protein YbeZ
FT                   or B0660 or Z0809 or Ecs0698 SW:PHOL_ECOLI (P77349) (359
FT                   aa) fasta scores: E(): 2.6e-60, 54.74% id in 316 aa, and to
FT                   Salmonella typhimurium YbeZ protein TR:Q9RCI1
FT                   (EMBL:AJ249116) (361 aa) fasta scores: E(): 1.8e-60, 52.94%
FT                   id in 340 aa"
FT                   /db_xref="GOA:Q7VZ87"
FT                   /db_xref="InterPro:IPR003714"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ87"
FT                   /protein_id="CAE41340.1"
FT                   /translation="MSTSRSRARRTMPAIVNLDGDNIHLANLCGPLDENLRQLADGMGV
FT                   KLARRGSRVTIEGEQAELAGRALRRFHEQATHRALSVDDIQLGLVEIGVGRPVEVQADP
FT                   RELDQTLPPVDDESGGVVLRTRRTDLRPRTPRQRDYMNNILKHDITFGVGPAGTGKTWL
FT                   AVACAIDAMERDTVQRLVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLMGFE
FT                   RVQRLFEKQTIEIAPLAYMRGRTLNHAFVILDEAQNTTPEQMKMFLTRIGFGSKAVITG
FT                   DPSQVDLPRGQQSGLAHAVQVLEEVQGIATTRFTNRDVVRHPLVARIVDAYDQAAANGD
FT                   "
FT   misc_feature    complement(39288..40265)
FT                   /note="HMMPfam hit to PF02562, PhoH-like protein"
FT   misc_feature    complement(39804..39827)
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   CDS             complement(40283..41626)
FT                   /transl_table=11
FT                   /locus_tag="BP1041"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Neisseria meningitidis hypothetical
FT                   protein Nma0590 TR:Q9JW12 (EMBL:AL162753) (442 aa) fasta
FT                   scores: E(): 5.1e-120, 68.65% id in 437 aa, and to
FT                   Haemophilus influenzae hypothetical protein Hi0019
FT                   SW:YLEA_HAEIN (Q57163) (474 aa) fasta scores: E():
FT                   2.8e-116, 67.86% id in 445 aa"
FT                   /db_xref="GOA:Q7VZ86"
FT                   /db_xref="InterPro:IPR013848"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VZ86"
FT                   /protein_id="CAE41341.1"
FT                   /translation="MYIRTFGCQMNEYDSDKMADVLRADQGLELTDNPEDADVILFNTC
FT                   SVREKAQEKVFSDLGRVQHLKKQNPNLVIGVGGCVASQEGEAIVKRAPYVDVVFGPQTL
FT                   HRLPDLIKRRRAQGVSQVDISFPEIEKFDALPPPRVDGATAFVSIMEGCSKYCSFCVVP
FT                   YTRGEEVSRPFDDVLLEVADLADQGVKEVTLLGQNVNAYRGAMGDSGEIADFAMLLEYV
FT                   HEIPGIERIRYTTSHPKEMTQRMVDAYARLPKLVSFLHLPVQAGSDRVLAAMKRGYTAL
FT                   EFKSVVRRLRAARPSLTLSSDFIVGFPGETEEDFQKTMKLIEDVGFDTSFSFVYSRRPG
FT                   TPAADLHDDTPQDVKLRRLQQLQALINQQAAAIAQGMIGTRQRVLVEGPSRRDPNELMG
FT                   RTENNRIVNFPGVPRLIGHMVDVVVTHAHTNSLRGRVAGIERDTSGAE"
FT   misc_feature    complement(40316..41629)
FT                   /note="HMMPfam hit to PF00919, Uncharacterized protein
FT                   family UPF0004"
FT   misc_feature    complement(41126..41188)
FT                   /note="ScanRegExp hit to PS01278, Uncharacterized protein
FT                   family UPF0004 signature. Confirmed by InterPro eMOTIF
FT                   pattern match."
FT   CDS             join(41939..42256,42255..42593)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP1042"
FT                   /product="putative membrane protein (Pseudogene)"
FT                   /note="Pseudogene. This CDS appears to have a frameshift
FT                   mutation following codon 106. The frameshift occurs within
FT                   a polymeric tract of (GC)5. The sequence has been checked
FT                   and believed to be correct. Similar to Vibrio cholerae
FT                   hypothetical protein Vc2488 TR:Q9KP85 (EMBL:AE004318) (178
FT                   aa) fasta scores: E(): 2.6e-05, 30.1% id in 186 aa, and to
FT                   Rhizobium meliloti hypothetical transmembrane protein
FT                   TR:CAC47890 (EMBL:AL591793) (235 aa) fasta scores: E():
FT                   2e-06, 38.97% id in 136 aa"
FT                   /db_xref="PSEUDO:CAE41342.1"
FT   misc_feature    join(41939..41995,42083..42151,42188..42241)
FT                   /note="3 probable transmembrane helices predicted for
FT                   BP1042 by TMHMM2.0 at aa 21-43, 73-95 and 108-125"
FT   misc_feature    41948..41980
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   variation       42254..42263
FT                   /note="(GC)5 in pertussis; (GC)6 in parapertussis and
FT                   bronchiseptica"
FT   repeat_region   complement(42619..43849)
FT                   /note="Insertion sequence"
FT   CDS             complement(42648..43664)
FT                   /transl_table=11
FT                   /locus_tag="BP1044"
FT                   /product="transposase for IS1663"
FT                   /note="Similar to Neisseria meningitidis putative
FT                   invertase/transposase Nma1800 TR:Q9JTF3 (EMBL:AL162757)
FT                   (318 aa) fasta scores: E(): 2e-17, 28.48% id in 316 aa and
FT                   Acinetobacter spSE19. pilin inverting protein ChnY
FT                   TR:Q9F7E1 (EMBL:AF282240) (324 aa) fasta scores: E():
FT                   8.2e-50, 47.516% id in 322 aa"
FT                   /db_xref="GOA:Q7TTD7"
FT                   /db_xref="InterPro:IPR003346"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTD7"
FT                   /protein_id="CAE41343.1"
FT                   /translation="MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKVVVN
FT                   TAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQAATALPQVRVSLVNPAQARDFAKA
FT                   LALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELNRKE
FT                   KSQFSPSAPVVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQ
FT                   AGNAILAVMHNRHIDSAQSLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAA
FT                   LVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLCFGVLKNRIPYQPNYAMNG"
FT   misc_feature    complement(42780..43112)
FT                   /note="HMMPfam hit to PF02371, Transposase
FT                   IS116/IS110/IS902 family"
FT   misc_feature    complement(43125..43412)
FT                   /note="HMMPfam hit to PF01548, Transposase"
FT   CDS             complement(43996..44931)
FT                   /transl_table=11
FT                   /gene="secF"
FT                   /locus_tag="BP1045"
FT                   /product="protein-export membrane protein"
FT                   /note="Similar to Escherichia coli protein-export membrane
FT                   protein SecF or B0409 or Z0508 or Ecs0460 SW:SECF_ECOLI
FT                   (P19674) (323 aa) fasta scores: E(): 1.7e-45, 42.24% id in
FT                   303 aa, and to Neisseria meningitidis protein-export
FT                   membrane protein SecF or Nma0813 or Nmb0608 TR:Q9JRH2
FT                   (EMBL:AL162754) (311 aa) fasta scores: E(): 1e-68, 62.54%
FT                   id in 307 aa"
FT                   /db_xref="GOA:Q7VZ85"
FT                   /db_xref="InterPro:IPR005665"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ85"
FT                   /protein_id="CAE41344.1"
FT                   /translation="MEFFRIHRTIPFMRHALVLNIISLVTFLAAVFFIITRGFHLSIEF
FT                   TGGTVMEVSYAQTAQLDQVRTAIGTLGYTDFQVQNFGTSRDVMIRLPIAEGQTSATQSE
FT                   TVMGALKAADPAVELRRVEFVGPQIGQELLHNGLMALLVVVIGIMVYLGLRFEWKFAVA
FT                   GVIANLHDVVIILGFFAFFQWEFSLAVLAGVLAVLGYSVNESVVIMDRIRENFRKYRKA
FT                   SVQEVINSAITQTISRTIITHGSTQMMVLAMLFFGGPTLHYFSLALTIGIWFGIYSSVF
FT                   VAAALAMWMGVKREDLVKPVKKDGDEVEIA"
FT   misc_feature    complement(44053..44847)
FT                   /note="HMMPfam hit to PF02355, Protein export membrane
FT                   protein"
FT   misc_feature    complement(join(44056..44121,44134..44199,44308..44373,
FT                   44386..44451,44467..44532,44815..44880))
FT                   /note="6 probable transmembrane helices predicted for
FT                   BP1045 by TMHMM2.0 at aa 17-39, 133-155, 160-182, 186-208,
FT                   244-266 and 270-292"
FT   misc_feature    complement(44764..44931)
FT                   /note="Signal peptide predicted for BP1045 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.625) with cleavage site
FT                   probability 0.291 between residues 56 and 57"
FT   CDS             complement(44981..46861)
FT                   /transl_table=11
FT                   /gene="secD"
FT                   /locus_tag="BP1046"
FT                   /product="protein-export membrane protein"
FT                   /note="Similar to Escherichia coli protein-export membrane
FT                   protein SecD or B0408 or Z0507 or Ecs0459 SW:SECD_ECOLI
FT                   (P19673) (615 aa) fasta scores: E(): 3.2e-51, 45.57% id in
FT                   632 aa, and to Neisseria meningitidis protein-export
FT                   membrane protein SecD or Nmb0607 TR:Q9K0J0 (EMBL:AE002416)
FT                   (618 aa) fasta scores: E(): 6.1e-112, 56.61% id in 627 aa"
FT                   /db_xref="GOA:Q7VZ84"
FT                   /db_xref="InterPro:IPR003335"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ84"
FT                   /protein_id="CAE41345.1"
FT                   /translation="MNRYPLWKYITVLVAVVIGLLYTLPNFYGESPAVQVSSAKATIKV
FT                   DQATLEQVQQIIENAQLPVDSVYYEQNGTLGTVRARFPSTDVQLQARDLIDRTLNTVAG
FT                   DPHYTVALNLLPASPPWMRSLGWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLV
FT                   ADVRSALRDQKAEVGAIERSGQSVVATFATAEQRDRARDVLRSRLPDLQFTETSDGGKL
FT                   QLTGMLNPAAVTRVQDTALKQNINTLHNRINELGVAEPVIQQQGADRIIVQLPGVQDVA
FT                   KAKELLGRTATLEIRMVDDSPAAQSALAAGSVPFGLERYTDRDGRPLLVRRQVVLTGEN
FT                   LQDAQPGRDGQTQQPAVHLTLDSKGARIFRDVTRDNIGKRMAILLFENGKGEVVTAPVI
FT                   RSEIGGGQVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKGFYS
FT                   TLYGFIAIAIFIIVYYHLFGIFSTIGLTVNVLLLLALLSMLQATLTLPGIAAIALTLGM
FT                   AIDANVLINERIREELRNGATPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGPI
FT                   RGFAVVHCLGIVTSMFSSVVGVRALANLWYGRKKKLSSISIGTVWKPKAN"
FT   misc_feature    complement(45038..45814)
FT                   /note="HMMPfam hit to PF02355, Protein export membrane
FT                   protein"
FT   misc_feature    complement(join(45041..45106,45119..45184,45287..45352,
FT                   45368..45433,45440..45496,46775..46840))
FT                   /note="6 probable transmembrane helices predicted for
FT                   BP1046 by TMHMM2.0 at aa 7-29, 455-474, 476-498, 503-525,
FT                   559-581 and 585-607"
FT   CDS             complement(46928..47272)
FT                   /transl_table=11
FT                   /locus_tag="BP1047"
FT                   /product="putative secreted protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein Pa3822 TR:Q9HXI0 (EMBL:AE004799) (112 aa) fasta
FT                   scores: E(): 1.2e-14, 48.27% id in 116 aa, and to
FT                   Escherichia coli hypothetical protein YajC or B0407 or
FT                   Z0506 or Ecs0458 SW:YAJC_ECOLI (P19677) (110 aa) fasta
FT                   scores: E(): 6.2e-14, 45.28% id in 106 aa"
FT                   /db_xref="InterPro:IPR003849"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ83"
FT                   /protein_id="CAE41346.1"
FT                   /translation="MSAIDTAGLVLAQAAPAEGNALMGMLPIVLMFVILYFLMIRPQMK
FT                   RQKEHRNMVAALSKGDEVVTSGGMLGRVSKVTDSYITVEVSELADKPVEVVMQKTAVSA
FT                   VLPKGTIKAL"
FT   misc_feature    complement(46955..47215)
FT                   /note="HMMPfam hit to PF02699, Uncharacterized secreted
FT                   proteins, YajC family COG1862"
FT   misc_feature    complement(47156..47212)
FT                   /note="1 probable transmembrane helix predicted for BP1047
FT                   by TMHMM2.0 at aa 20-39"
FT   CDS             complement(47417..48367)
FT                   /transl_table=11
FT                   /locus_tag="BP1048"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTC0"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTC0"
FT                   /protein_id="CAE41347.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN"
FT   repeat_region   47417..47448
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   complement(47417..48469)
FT   misc_feature    complement(47453..47986)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   misc_feature    complement(48044..48109)
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   repeat_region   complement(48438..48469)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(48466..49602)
FT                   /transl_table=11
FT                   /gene="tgt"
FT                   /locus_tag="BP1049"
FT                   /product="queuine tRNA-ribosyltransferase"
FT                   /EC_number="2.4.2.29"
FT                   /note="Similar to Escherichia coli queuine
FT                   tRNA-ribosyltransferase Tgt or B0406 SW:TGT_ECOLI (P19675)
FT                   (375 aa) fasta scores: E(): 2.9e-99, 65.77% id in 374 aa,
FT                   and to Neisseria meningitidis putative queuine
FT                   tRNA-ribosyltransferase Tgt or Nma0928 TR:Q9JVA4
FT                   (EMBL:AL162754) (371 aa) fasta scores: E(): 7.1e-103, 67.2%
FT                   id in 375 aa"
FT                   /db_xref="GOA:Q7VZ82"
FT                   /db_xref="HSSP:1PXG"
FT                   /db_xref="InterPro:IPR004803"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ82"
FT                   /protein_id="CAE41348.1"
FT                   /translation="MTGLQFELLATDGGARRGRLTLNHGVVETPIFMSVGTYGSVKAML
FT                   PHELEDIGAQIVLGNTFHLWLRPGTAIMEKHGGLHGFMQWDKPILTDSGGFQVFSLQGM
FT                   RKITEEGVKFASPIDGARLFLTPEESMRIQRSLNSDIVMVFDECTPYEIDGRPASIDED
FT                   ARSMRMSLRWARRSRDEFDRLGNPNALFGIVQGGMYEALRDESLAGLAEIGFHGYAIGG
FT                   LSVGEPKEDMMRILAHVTPRLPAQAPRYLMGVGTPEDLVEGVARGVDMFDCVMPTRNAR
FT                   NGWLFTRYGDVKIRNARYRDDTRPLDPSCACHTCGHFSRAYLHHLQRANEITGARLNTL
FT                   HNLHFYLAIMGEMREAIAAGRFEAWRAQFAADRARGVD"
FT   misc_feature    complement(48490..49221)
FT                   /note="HMMPfam hit to PF01702, Queuine
FT                   tRNA-ribosyltransferase"
FT   CDS             complement(49599..50642)
FT                   /transl_table=11
FT                   /gene="queA"
FT                   /locus_tag="BP1050"
FT                   /product="S-adenosylmethionine:tRNA
FT                   ribosyltransferase-isomerase"
FT                   /EC_number="5.-.-.-"
FT                   /note="Similar to Escherichia coli
FT                   S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA
FT                   or B0405 or Z0504 or Ecs0456 SW:QUEA_ECOLI (P21516) (356
FT                   aa) fasta scores: E(): 3.2e-67, 55.97% id in 343 aa, and to
FT                   Pseudomonas syringae QueA TR:Q9L6W9 (EMBL:AF232004) (354
FT                   aa) fasta scores: E(): 2.6e-71, 59.42% id in 345 aa"
FT                   /db_xref="GOA:Q7VZ81"
FT                   /db_xref="InterPro:IPR003699"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VZ81"
FT                   /protein_id="CAE41349.1"
FT                   /translation="MPTPLTLADFDYHLPPELIAQSPAAERGGSRLLHLDAASRLHDRR
FT                   FPDLAGLLRPHDLLVFNDTRVIKARLTGQKATGGKVEVLVERITAPDRALAHVRASKSP
FT                   GPGMRLRLAEAFEAEVLGREGELFDLRFPAPVLDLLDAHGATPLPPYITHAADATDERR
FT                   YQTVYAREPGAVAAPTAGLHFDQPMLEQLAAQGVQRAFVTLHVGAGTFQPVRVQNLAEH
FT                   IMHAEWYTVPEATVAAIARARAHGGRIVAVGTTSVRALESAAAQAQDGPLAAAQGDTRL
FT                   FITPGYRYRAVDALLTNFHLPQSTLLMLVSALAGVEPIRRAYAHAVAERYRFFSYGDAM
FT                   FIETPAP"
FT   misc_feature    complement(49995..50630)
FT                   /note="HMMPfam hit to PF02547, Queuosine biosynthesis
FT                   protein"
FT   CDS             50830..52266
FT                   /transl_table=11
FT                   /locus_tag="BP1051"
FT                   /product="probable D-alanyl-D-alanine carboxypeptidase"
FT                   /note="Similar to Escherichia coli penicillin-binding
FT                   protein 4 precursor DacB or B3182 SW:PBP4_ECOLI (P24228)
FT                   (477 aa) fasta scores: E(): 2.5e-21, 29.19% id in 435 aa,
FT                   and to Pseudomonas aeruginosa probable D-alanyl-D-alanine
FT                   carboxypeptidase Pa3047 TR:Q9HZG1 (EMBL:AE004729) (476 aa)
FT                   fasta scores: E(): 4.4e-57, 40.21% id in 470 aa"
FT                   /db_xref="GOA:Q7VZ80"
FT                   /db_xref="InterPro:IPR000667"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ80"
FT                   /protein_id="CAE41350.1"
FT                   /translation="MRRAGKQGKWQQWLAGVMLALGAAGAAAQGLPSSLVAAWKATKLP
FT                   DQSLSLVVQEINGPRLATLNAKEPRNPASVMKLVTTWAALSELGPSYAWRTEFLTEPGN
FT                   RPDAHGVLRGPLYLRAGGDPQLLLQDLWALLRELRLRGVKQIGDLVVDRSIFGQVAIDP
FT                   GAFDGASDRAYNASPDALMVGFGAQRLLFTPDAAARKWVPMIDPPLPGLRLEGAVEWSD
FT                   VRCPGPPVVGTEPVVTQQGVSIRLSGKVAGSCGEFSLYRLALSQPEYASAVFRLLWREL
FT                   GGTLKGQIRSGVVPPDAVVLASHDSPTLGEAIRTINKRSNNVMARTLLLTLGAERGRRP
FT                   ATVESSGVVARTVLGAQGLEMPELVIDNGSGLSREGRVSADSLASMLTVAWNSPLMPEF
FT                   ISSLAIAGVDGTVRRRLKGNGAQGMAHLKTGSLRDVRAVAGYVLGASGKRYVVVSMVNH
FT                   ENAAAVRSFDDALVAWLAEQ"
FT   misc_feature    50830..50913
FT                   /note="Signal peptide predicted for BP1051 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.794 between residues 28 and 29"
FT   misc_feature    51043..51378
FT                   /note="HMMPfam hit to PF02113, D-Ala-D-Ala carboxypeptidase
FT                   3 (S13) family"
FT   misc_feature    51631..52200
FT                   /note="HMMPfam hit to PF02113, D-Ala-D-Ala carboxypeptidase
FT                   3 (S13) family"
FT   CDS             52357..52998
FT                   /transl_table=11
FT                   /gene="upp"
FT                   /gene_synonym="uraP"
FT                   /locus_tag="BP1052"
FT                   /product="uracil phosphoribosyltransferase"
FT                   /EC_number="2.4.2.9"
FT                   /note="Similar to Escherichia coli uracil
FT                   phosphoribosyltransferase Upp or Urap or B2498 SW:UPP_ECOLI
FT                   (P25532) (208 aa) fasta scores: E(): 3.1e-52, 65.21% id in
FT                   207 aa, and to Pseudomonas aeruginosa uracil
FT                   phosphoribosyltransferase Upp or Pa4646 SW:UPP_PSEAE
FT                   (Q9HVE6) (212 aa) fasta scores: E(): 4.1e-60, 76.88% id in
FT                   212 aa"
FT                   /db_xref="GOA:Q7VZ79"
FT                   /db_xref="HSSP:1I5E"
FT                   /db_xref="InterPro:IPR005765"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VZ79"
FT                   /protein_id="CAE41351.1"
FT                   /translation="MPVHEIRHPLIRHKLGIMRRADLSTKSFRELSQEVAALLTYEATK
FT                   DMPLAPASVEGWCGTVEVDKITGKKVTVVPILRAGIGMLDGVLSLIPGAKVSVVGVARN
FT                   EETLQAHTYLERLVGELDQRLALIVDPMLATGGSMVAAIDMLKRAGCREIRALTLVSAP
FT                   EGIDAVLKAHPDVQIYTASIDQGLNENGYIMPGLGDAGDRIFGTTQKHAE"
FT   misc_feature    52405..52902
FT                   /note="HMMPfam hit to PF00156, Phosphoribosyl transferase
FT                   domain"
FT   repeat_region   53149..54379
FT                   /note="Insertion sequence"
FT   CDS             53334..54350
FT                   /transl_table=11
FT                   /locus_tag="BP1053"
FT                   /product="transposase for IS1663"
FT                   /note="Similar to Neisseria meningitidis putative
FT                   invertase/transposase Nma1800 TR:Q9JTF3 (EMBL:AL162757)
FT                   (318 aa) fasta scores: E(): 2e-17, 28.48% id in 316 aa and
FT                   Acinetobacter spSE19. pilin inverting protein ChnY
FT                   TR:Q9F7E1 (EMBL:AF282240) (324 aa) fasta scores: E():
FT                   8.2e-50, 47.516% id in 322 aa"
FT                   /db_xref="GOA:Q7VZ78"
FT                   /db_xref="InterPro:IPR002525"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ78"
FT                   /protein_id="CAE41352.1"
FT                   /translation="MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKVVVN
FT                   TAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQAATALPQVRVSLVNPAQARDFAKA
FT                   LALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELNRKE
FT                   KSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQ
FT                   AGNAILAVMHNRHIDSAQSLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAA
FT                   LVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKQVHLCFGVLKNRIPYQPNYAMNG"
FT   misc_feature    53586..53873
FT                   /note="HMMPfam hit to PF01548, Transposase"
FT   misc_feature    53886..54218
FT                   /note="HMMPfam hit to PF02371, Transposase
FT                   IS116/IS110/IS902 family"
FT   CDS             54683..57415
FT                   /transl_table=11
FT                   /gene="prn"
FT                   /locus_tag="BP1054"
FT                   /product="pertactin precursor"
FT                   /note="Identical to the previously sequenced Bordetella
FT                   pertussis pertactin precursor Prn or Omp69A SW:PERT_BORPE
FT                   (P14283) (910 aa) fasta scores: E(): 0, 100% id in 910 aa,
FT                   and to Bordetella bronchiseptica pertactin precursor Prn
FT                   SW:PERT_BORBR (Q03035) (911 aa) fasta scores: E():
FT                   1.4e-160, 91.31% id in 921 aa"
FT                   /db_xref="GOA:P14283"
FT                   /db_xref="InterPro:IPR003992"
FT                   /db_xref="PDB:1DAB"
FT                   /db_xref="UniProtKB/Swiss-Prot:P14283"
FT                   /protein_id="CAE41353.1"
FT                   /translation="MNMSLSRIVKAAPLRRTTLAMALGALGAAPAAHADWNNQSIVKTG
FT                   ERQHGIHIQGSDPGGVRTASGTTIKVSGRQAQGILLENPAAELQFRNGSVTSSGQLSDD
FT                   GIRRFLGTVTVKAGKLVADHATLANVGDTWDDDGIALYVAGEQAQASIADSTLQGAGGV
FT                   QIERGANVTVQRSAIVDGGLHIGALQSLQPEDLPPSRVVLRDTNVTAVPASGAPAAVSV
FT                   LGASELTLDGGHITGGRAAGVAAMQGAVVHLQRATIRRGDAPAGGAVPGGAVPGGAVPG
FT                   GFGPGGFGPVLDGWYGVDVSGSSVELAQSIVEAPELGAAIRVGRGARVTVSGGSLSAPH
FT                   GNVIETGGARRFAPQAAPLSITLQAGAHAQGKALLYRVLPEPVKLTLTGGADAQGDIVA
FT                   TELPSIPGTSIGPLDVALASQARWTGATRAVDSLSIDNATWVMTDNSNVGALRLASDGS
FT                   VDFQQPAEAGRFKVLTVNTLAGSGLFRMNVFADLGLSDKLVVMQDASGQHRLWVRNSGS
FT                   EPASANTLLLVQTPLGSAATFTLANKDGKVDIGTYRYRLAANGNGQWSLVGAKAPPAPK
FT                   PAPQPGPQPPQPPQPQPEAPAPQPPAGRELSAAANAAVNTGGVGLASTLWYAESNALSK
FT                   RLGELRLNPDAGGAWGRGFAQRQQLDNRAGRRFDQKVAGFELGADHAVAVAGGRWHLGG
FT                   LAGYTRGDRGFTGDGGGHTDSVHVGGYATYIADSGFYLDATLRASRLENDFKVAGSDGY
FT                   AVKGKYRTHGVGASLEAGRRFTHADGWFLEPQAELAVFRAGGGAYRAANGLRVRDEGGS
FT                   SVLGRLGLEVGKRIELAGGRQVQPYIKASVLQEFDGAGTVHTNGIAHRTELRGTRAELG
FT                   LGMAAALGRGHSLYASYEYSKGPKLAMPWTFHAGYRYSW"
FT   misc_feature    54683..54784
FT                   /note="Signal peptide predicted for BP1054 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.995 between residues 28 and 29"
FT   CDS             complement(57482..58903)
FT                   /transl_table=11
FT                   /gene="cysG"
FT                   /locus_tag="BP1055"
FT                   /product="siroheme synthase"
FT                   /EC_number="2.1.1.107"
FT                   /note="Similar to Escherichia coli siroheme synthase CysG
FT                   or B3368 or Z4729 or Ecs4219 SW:CYSG_ECOLI (P11098) (457
FT                   aa) fasta scores: E(): 5.7e-77, 49.56% id in 462 aa, and to
FT                   Xylella fastidiosa siroheme synthase Xf0832 TR:Q9PF46
FT                   (EMBL:AE003922) (476 aa) fasta scores: E(): 2e-95, 60% id
FT                   in 470 aa"
FT                   /db_xref="GOA:Q7VZ77"
FT                   /db_xref="HSSP:1PJT"
FT                   /db_xref="InterPro:IPR003043"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VZ77"
FT                   /protein_id="CAE41354.1"
FT                   /translation="MTLFPIFADLTGRRVLVVGGGAVAVRKTQALLQAGAEVVVGAPRL
FT                   DPALAALAEQGGIARLDGGFEPAWLAGAWLVVAATDDRAVNAAVSEAARARRVFCNVVD
FT                   DAELSSFQVPSVVDRSPLIVAISSSGVAPVLARRLRERIESLFDHSLGQLAALAARYRP
FT                   RIRAARPDLGQRRRFYDWLLDGPVAARLRQQQPGLAEQELEQALRAPQAAPRGSVVLVG
FT                   AGPGDPGLLTLKALRALNEADIILYDRLVSEGVLALARRDAERVPVGKLPGKGHDATQA
FT                   RIHALMLAQARAGRRVVRLKGGDAFIFGRGGEELEYLRAHGVPYEVVPGITAALACAAY
FT                   AGMPLTHRDHAQSVRMVTAHCRADQDTLDWAGLARDQQTLAFYMGVGQLDYVTARLLEH
FT                   GRAPATPFALIENGSRPEQRVVTGTLADLPEIARRRGVRPPALLVIGEVAALADTLQWF
FT                   GQHQRGLPGPQALAA"
FT   misc_feature    complement(57617..58255)
FT                   /note="HMMPfam hit to PF00590, Tetrapyrrole
FT                   (Corrin/Porphyrin) Methylases."
FT   misc_feature    complement(57914..58015)
FT                   /note="ScanRegExp hit to PS00840, Uroporphyrin-III
FT                   C-methyltransferase signature 2. Confirmed by InterPro
FT                   eMOTIF pattern match."
FT   misc_feature    complement(58199..58243)
FT                   /note="ScanRegExp hit to PS00839, Uroporphyrin-III
FT                   C-methyltransferase signature 1. Confirmed by InterPro
FT                   eMOTIF pattern match."
FT   CDS             59167..59883
FT                   /transl_table=11
FT                   /locus_tag="BP1056"
FT                   /product="putative membrane protein"
FT                   /note="Weakly similar to Bacteriophage Mx8 p64 TR:AAK94399
FT                   (EMBL:AF396866) (357 aa) fasta scores: E(): 6.6, 25.54% id
FT                   in 137 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ76"
FT                   /protein_id="CAE41355.1"
FT                   /translation="MMVRFFVSIGVLAWAGAAQAGVCDAKFMHDGGQVQLTGSGNIGLG
FT                   ADLGFTEVSKTNGDNCRARVQGMATFSYAGLPPGKSRLDYLMTVKNGQATFVKYAEAGE
FT                   QPRSEGQFDLRMLGLFAYDKISGEGQRLPGASYRLRIGKEAPVGGQPTTVVRIGEKTVG
FT                   ARQDLSTALGRHACWPITYPRSSEPTMATFKGLTLPIPGMDTTVTDWYCPSVNLVMRQD
FT                   IDQAGIKSSVEITQLK"
FT   misc_feature    59173..59232
FT                   /note="1 probable transmembrane helix predicted for BP1056
FT                   by TMHMM2.0 at aa 56-75"
FT   misc_feature    59386..59409
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   CDS             59968..60285
FT                   /transl_table=11
FT                   /locus_tag="BP1057"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Escherichia coli ElaB protein ElaB or
FT                   B2266 or Z3526 or Ecs3154 SW:ELAB_ECOLI (P52084) (101 aa)
FT                   fasta scores: E(): 1.1e-06, 35.86% id in 92 aa, and to
FT                   Pseudomonas aeruginosa hypothetical protein Pa3040
FT                   TR:Q9HZG8 (EMBL:AE004729) (109 aa) fasta scores: E():
FT                   5.6e-10, 39.45% id in 109 aa"
FT                   /db_xref="InterPro:IPR010279"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ75"
FT                   /protein_id="CAE41356.1"
FT                   /translation="MAARRSDEATKEKLIDSVKTSLNDAETLLREAASTTGDKATELRE
FT                   RALASVRRTREALYDAQDAVLERGRRAARATDDYVHDNPWQAISIAGVTGLLLGLLISR
FT                   R"
FT   misc_feature    60220..60273
FT                   /note="1 probable transmembrane helix predicted for BP1057
FT                   by TMHMM2.0 at aa 85-102"
FT   CDS             60326..60739
FT                   /transl_table=11
FT                   /locus_tag="BP1058"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein Pa3041 TR:Q9HZG7 (EMBL:AE004729) (126 aa) fasta
FT                   scores: E(): 0.00021, 34.48% id in 116 aa"
FT                   /db_xref="InterPro:IPR019279"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ74"
FT                   /protein_id="CAE41357.1"
FT                   /translation="MGLRRSVFGVAASLVGLTRTRLELLALEAAGEKIRLIKLLGMAFG
FT                   ALLFLTLAVLVFTITIAVAFWPTESRYAALGWLAGGYGVIGLVLFFLVRRDLVDGPVPF
FT                   AATLEELGRDTDMLERVRDAQRASDGQRNAEDD"
FT   misc_feature    join(60455..60523,60536..60604)
FT                   /note="2 probable transmembrane helices predicted for
FT                   BP1058 by TMHMM2.0 at aa 44-66 and 71-93"
FT   CDS             60741..61100
FT                   /transl_table=11
FT                   /locus_tag="BP1059"
FT                   /product="hypothetical protein"
FT                   /note="Weakly similar to Synechocystis sp hypothetical 23.9
FT                   kDa protein Slr1949 TR:P74511 (EMBL:D90915) (212 aa) fasta
FT                   scores: E(): 8.6, 22.85% id in 140 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ73"
FT                   /protein_id="CAE41358.1"
FT                   /translation="MARHSASVDRMVRLELLRARAALEREALAQGIVEAGRTLTPSNMV
FT                   KSIWPSLGKANTSRLFWQAFALVRRYPFVSSTLSAMVMGRGARRSRLLKLAGVALVGWQ
FT                   AYRIWQSAREERQAD"
FT   CDS             complement(61143..62702)
FT                   /transl_table=11
FT                   /gene="ubiD"
FT                   /locus_tag="BP1060"
FT                   /product="3-octaprenyl-4-hydroxybenzoate carboxy-lyase"
FT                   /EC_number="4.1.1.-"
FT                   /note="Similar to Escherichia coli
FT                   3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD or B3843
FT                   SW:UBID_ECOLI (P26615) (497 aa) fasta scores: E(): 2.7e-65,
FT                   68.15% id in 515 aa, and to Neisseria meningitidis
FT                   3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD or
FT                   Nmb1694 SW:UBID_NEIMB (Q9JY86) (494 aa) fasta scores: E():
FT                   4.6e-70, 70.68% id in 515 aa"
FT                   /db_xref="GOA:Q7VZ72"
FT                   /db_xref="InterPro:IPR002830"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VZ72"
FT                   /protein_id="CAE41359.1"
FT                   /translation="MPGSALKYRDLRDFLAQLERQGELKRITAPVSTRLEMTEIADRVL
FT                   RAGGPALLFENARHNDAPADMPVLANLFGTPRRVAWGMGADDVGALRETGELLASLREP
FT                   EAPKGLRDALAKVSMLKAALWDMSPKTVRSAACQEIVWEGADVELSRLPIQTCWPGDVA
FT                   PLLAWGLVITRGPNARRQNLGIYRQQPLGPNKLIMRWLSHRGGALDFRDHAQAHPGKPF
FT                   PITVALGADPATILGAVTPVPDTLSEYQFAGLLRGSRTEVVKALGSDLSVPASAEIVLE
FT                   GHLLPADDPRAVAAVVPEGANPPPATGYEMALEGPYGDHTGYYNEQDWFPVFTVDRITM
FT                   RRNPIYHSTYTGKPPDEPAVLGVALNEVFVPLLRRQLPEIVDFYLPPEGCSYRLAVVSI
FT                   RKQYAGHAKRVMFGLWSVLRQFMYTKFIVVVDEDIDPRDWTEVVWAMTTRMDPVRDTVL
FT                   VENAPIDYLDFASPVSGLGGKMGLDATNKWPGETSREWGTPIHMDEAVKRRVDAMWDTL
FT                   GL"
FT   misc_feature    complement(61305..62660)
FT                   /note="HMMPfam hit to PF01977, VdcC family"
FT   CDS             62771..63601
FT                   /transl_table=11
FT                   /locus_tag="BP1061"
FT                   /product="putative transglycosylase"
FT                   /note="Similar to Neisseria meningitidis putative
FT                   transglycosylase Nma1674 TR:Q9JTQ7 (EMBL:AL162756) (207 aa)
FT                   fasta scores: E(): 0.017, 30.05% id in 193 aa, and to
FT                   Caulobacter crescentus transglycosylase, putative Cc2416
FT                   TR:Q9A5N1 (EMBL:AE005911) (218 aa) fasta scores: E():
FT                   0.034, 31.32% id in 166 aa"
FT                   /db_xref="InterPro:IPR008258"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ71"
FT                   /protein_id="CAE41360.1"
FT                   /translation="MPDASVAGLFRQLAQGVHHHLAEWLRISSVYLGIAVIVTVSMGFA
FT                   LPGLRDQALQVHKALLTALAPTSMPSAELEPGAEAGADASSAVVMAIPSAPASNATGFL
FT                   GPLRSDTPPAPPNRPSAASSAQVEALRNYISRKYKVAYDATAVLVNTVYKVGREKQLDP
FT                   LLLLAVIAIESRYNPFAESPVGAQGLMQVMTRVHQDKFDAIAHVGKGNPLDPVANIHVG
FT                   STILKDCINRRGSFNGGLACYVGATGPDDGGYGAKVLAERRRLALASGIALARD"
FT   misc_feature    62849..62917
FT                   /note="1 probable transmembrane helix predicted for BP1061
FT                   by TMHMM2.0 at aa 27-49"
FT   misc_feature    63218..63568
FT                   /note="HMMPfam hit to PF01464, Transglycosylase SLT domain"
FT   CDS             complement(63636..64790)
FT                   /transl_table=11
FT                   /locus_tag="BP1062"
FT                   /product="probable aminotransferase"
FT                   /note="Similar to Thermus aquaticus aspartate
FT                   aminotransferase AspC SW:AAT_THETH (Q56232) (385 aa) fasta
FT                   scores: E(): 9.9e-32, 34.27% id in 388 aa, and to
FT                   Pseudomonas aeruginosa probable aminotransferase Pa4722
FT                   TR:Q9HV76 (EMBL:AE004885) (390 aa) fasta scores: E():
FT                   7e-65, 47.89% id in 380 aa"
FT                   /db_xref="GOA:Q7VZ70"
FT                   /db_xref="HSSP:1DJU"
FT                   /db_xref="InterPro:IPR015421"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ70"
FT                   /protein_id="CAE41361.1"
FT                   /translation="MPRLATRTNDFLTFQVVELFKEAQALQAAGRDIISLGIGEPDFTA
FT                   PPQVVEALERATRAGLNGYSAPAGLSALREAIAAFYESEFGARVDPARIIVTAGASGAL
FT                   ALACAALVNPGAQVLMPDPSYPANSNFVLAAGGQPRLIPSTAAKRFQLSAQDVRDHWND
FT                   ATQGVLIASPSNPTGTSIAHDELAELLAAVRERQGFSIVDEIYLGLSYESQPRSALLLD
FT                   DNIIVINSFSKYFHMTGWRLGWMIVPESMAAKVEKMAASLAICAPTLAQHAALACFTPD
FT                   ALKIFEHRREAFKQRRDYLLPEFERLGIPVPVRPDGAFYIYADIAALGTTSMAFSHRLL
FT                   HEGGVAAVPGLDFGPAHGERTMRFSYATGLDRLQEAVARIEKLL"
FT   misc_feature    complement(63639..64790)
FT                   /note="HMMPfam hit to PF00155, Aminotransferase class I and
FT                   II"
FT   CDS             64833..65705
FT                   /transl_table=11
FT                   /locus_tag="BP1063"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Mycobacterium tuberculosis hypothetical
FT                   27.6 kDa protein Rv1249c or Mtv006.21C TR:O50464
FT                   (EMBL:AL021006) (262 aa) fasta scores: E(): 0.28, 33.92% id
FT                   in 168 aa, and to Streptomyces coelicolor hypothetical 37.5
FT                   kDa protein Scbac19f3.03C TR:CAC44326 (EMBL:AL596102) (377
FT                   aa) fasta scores: E(): 4, 28.98% id in 314 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ69"
FT                   /protein_id="CAE41362.1"
FT                   /translation="MQPSRRAFLLGRRPRQSSWAAFCERLSLAVAAPLRDLDPAGGAAL
FT                   LRARSDAEVRRARALCQEYGVSLGLPGARPAGRPVLQIDPRGLRALAPEGGAWRAGPGC
FT                   LAGELAAAGLGQFAEVAPTCTLADWLADSHGWPTGETGVSGVLEASVLLADGTAEVLGP
FT                   FGAADVRPLRSATVQRLVPALFQLAGGQDAAACLAQPAWPARYRLDALQPREPAGVNLA
FT                   HLLLGHDSALAWVESVLLAPAAAPPPAASGSAPAEAARLDARVRALFDPDGVLAARAGS
FT                   GAVGAKGRE"
FT   CDS             65822..68110
FT                   /transl_table=11
FT                   /gene="maeB"
FT                   /locus_tag="BP1064"
FT                   /product="NADP-dependent malic enzyme"
FT                   /EC_number="1.1.1.40"
FT                   /note="Similar to Escherichia coli NADP-dependent malic
FT                   enzyme Maeb or B2463 SW:MAO2_ECOLI (P76558) (759 aa) fasta
FT                   scores: E(): 1.3e-173, 59.81% id in 759 aa, and to
FT                   Haemophilus influenzae NADP-dependent malic enzyme MaeB or
FT                   hi1245 SW:MAO2_HAEIN (P43837) (756 aa) fasta scores: E():
FT                   3.1e-168, 58.1% id in 759 aa. Almost identical to BP3456
FT                   (97.082% identity in 754 aa overlap), and highly similar to
FT                   BP1120 (63.900% identity in 759 aa overlap)"
FT                   /db_xref="GOA:Q7VZ68"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ68"
FT                   /protein_id="CAE41363.1"
FT                   /translation="MDANFRKAALEYHEHGRPGKISVTPTKQLSNQRDLSLAYSPGVAA
FT                   ACEEIVDDPVNVFRYTGRGNLVGVITNGTAVLGLGNIGALASKPVMEGKAVLFKKFAGL
FT                   DVFDIEINETDPDKLVEIIAGLEATFGGINLEDIKAPECFTVERKLRERMKIPVFHDDQ
FT                   HGTAITVCAAVVNGLAVAGKRIEDVKLVTSGAGAAALACLDLLVDLGLPLEHIWVTDIE
FT                   GVVYEGRKKLMDADKERFARKTKARTLAEVIEGADVFLGLSAGNVLKPEMVATMAANPL
FT                   ILALANPNPEILPEAAHAVRDDIVMATGRSDYPNQVNNVLCFPYIFRGALDVGATTITR
FT                   EMEKAAVLAIASLAREEQNEVVAAAYGTYDISFGRDYLIPKPFDPRLIVRIAPAVAKAA
FT                   MEGGVATRPIADLDAYAEQLQQFVYHSGAFMKPLFSQAKQIVRDGGRARIVFTEGEDER
FT                   VLRAVQVIVDEKVAKPILVGRPQVLLSRIEKFGLRLRLGQDVEVCNPEYDERFHQYWTT
FT                   YWDMMCRNGITKEMARVEMRRRLTLIGAMMVHLGDADGMICGAVSGFHDHLRFIDQVIG
FT                   RKPGAQTYAAMNILLLNERTVALVDTHVNEDPSAEQIAEYTVAAAEEMQRLGLAPKVAL
FT                   LSRSNFGSGSSASGAKMRHALELVNRQAPGLEIDGEMHGDCALDESLRLRLLPDSPLKG
FT                   SANLLVCPNVDSGNIAYNLLKTTAGGNVAVGPFLLGANAAVHILTSSSTVRRIVNMAAM
FT                   AVVNADAVR"
FT   misc_feature    67103..68086
FT                   /note="HMMPfam hit to PF01515, Phosphate acetyl/butaryl
FT                   transferase"
FT   CDS             join(68160..68456,68458..69033,69033..69320)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP1065"
FT                   /product="conserved hypothetical protein (Pseudogene)"
FT                   /note="Pseudogene. This CDS appears to have two frameshift
FT                   mutation following codons 99 and 291. The second frameshift
FT                   occurs within a polymeric tract of (G)4. The sequence has
FT                   been checked and believed to be correct. Similar to
FT                   Pseudomonas aeruginosa hypothetical protein Pa3241
FT                   TR:Q9HYZ9 (EMBL:AE004747) (389 aa) fasta scores: E():
FT                   6.9e-54, 43.84% id in 390 aa, and to Rhizobium loti Mlr3635
FT                   protein Mlr3635 TR:Q98FS8 (EMBL:AP003002) (361 aa) fasta
FT                   scores: E(): 0.46, 26.38% id in 235 aa"
FT                   /db_xref="PSEUDO:CAE41364.1"
FT   variation       68457
FT                   /note="G in pertussis; (AT)G in parapertussis and
FT                   bronchiseptica"
FT   variation       69030..69033
FT                   /note="(G)4 in pertussis; GG(A)GG in parapertussis and
FT                   bronchiseptica"
FT   CDS             69317..69781
FT                   /transl_table=11
FT                   /locus_tag="BP1066"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Xylella fastidiosa hypothetical protein
FT                   Xf2616 TR:Q9PAA2 (EMBL:AE004068) (138 aa) fasta scores:
FT                   E(): 0.34, 27.92% id in 111 aa"
FT                   /db_xref="HSSP:1A19"
FT                   /db_xref="InterPro:IPR000468"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ67"
FT                   /protein_id="CAE41365.1"
FT                   /translation="MTRNGQTTLQRQLRRGGALDHDGLDKQAVVDATRELGMSLLVADC
FT                   DRARSRSAVLRAIAKAVDFPEYFGGNLDALYDCLCDTVLDHKTGIVLWLYRLHSGDPAL
FT                   HEDSNLIDGVCADTAEFARENGRVFAYVIEHAGRHPDPEPGVAAAPYGEA"
FT   CDS             complement(69808..70758)
FT                   /transl_table=11
FT                   /locus_tag="BP1067"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q84CT8"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q84CT8"
FT                   /protein_id="CAE41366.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT"
FT   repeat_region   69808..69839
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   complement(69808..70860)
FT   misc_feature    complement(69844..70377)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   misc_feature    complement(70435..70500)
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   repeat_region   complement(70829..70860)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   tRNA            complement(71009..71085)
FT                   /note="tRNA Pro anticodon TGG, Cove score 87.76"
FT   CDS             complement(71126..71902)
FT                   /transl_table=11
FT                   /gene="pstB"
FT                   /gene_synonym="phoT"
FT                   /locus_tag="BP1068"
FT                   /product="phosphate transport ATP-binding protein"
FT                   /note="Similar to Escherichia coli phosphate transport
FT                   ATP-binding protein PstB or PhoT or B3725 or Z5216 or
FT                   Ecs4661 SW:PSTB_ECOLI (P07655) (257 aa) fasta scores: E():
FT                   1.2e-76, 80.47% id in 251 aa, and to Edwardsiella tarda
FT                   peripheral membrane protein B PstB TR:Q9AML4
FT                   (EMBL:AF324340) (259 aa) fasta scores: E(): 1.8e-75, 76.83%
FT                   id in 259 aa"
FT                   /db_xref="GOA:Q7VZ66"
FT                   /db_xref="InterPro:IPR005670"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VZ66"
FT                   /protein_id="CAE41367.1"
FT                   /translation="MENTATAAKAKLEVKNLNFYYGKFHAIRNVNMSIRENKVTAFIGP
FT                   SGCGKSTLLRTFNRMFELYPGQRAEGEILLDGENLLTSKTDISLIRAKVGMVFQKPTPF
FT                   PMSIYDNIAFGVRLFERLSKGEMDERVEWALSKAALWNEVKDKLHQSGNSLSGGQQQRL
FT                   CIARGVAIKPEVLLLDEPCSALDPISTAKIEELIAELKHEYTVVIVTHNMQQAARCSDY
FT                   TAYMYLGELMEYGATDQIFVKPARKETEDYITGRFG"
FT   misc_feature    complement(71216..71794)
FT                   /note="HMMPfam hit to PF00005, ABC transporter"
FT   misc_feature    complement(71396..71440)
FT                   /note="ScanRegExp hit to PS00211, ABC transporters family
FT                   signature. Confirmed by InterPro eMOTIF pattern match."
FT   misc_feature    complement(71750..71773)
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   CDS             complement(71947..72783)
FT                   /transl_table=11
FT                   /gene="pstA"
FT                   /gene_synonym="phoT"
FT                   /locus_tag="BP1069"
FT                   /product="phosphate transport system permease protein"
FT                   /note="Similar to Escherichia coli phosphate transport
FT                   system permease protein PstA or PhoT or B3726 SW:PSTA_ECOLI
FT                   (P07654) (296 aa) fasta scores: E(): 1.8e-60, 58.45% id in
FT                   272 aa, and to Pasteurella multocida PstA or Pm0434
FT                   TR:Q9CNJ6 (EMBL:AE006079) (280 aa) fasta scores: E():
FT                   7.7e-74, 72% id in 275 aa"
FT                   /db_xref="GOA:Q7VZ65"
FT                   /db_xref="InterPro:IPR005672"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ65"
FT                   /protein_id="CAE41368.1"
FT                   /translation="MNNGVYRRRHLVNKVMLTISLGALLFGLFWLFWIIATLLVKGAPA
FT                   LSFTLFTEITPPPGQAGGLLNAVVGSVLMAGVGTLIGTPVGILAGTYLAEYGQRGWLAP
FT                   ATRFLNDVLLSAPSIIIGLFIYAVYVAQVGHYSGWAGALALSILVIPVVVRTTDNMLLL
FT                   VPNSLREATAALGCPKWRMITLVCYRAAKTGIITGVLLAIARISGETAPLLFTALSNQF
FT                   MSLNMNAPMANLPVVIYQYAASPFKDWNNLAWAGATLITLLVLGINILARNLFRKS"
FT   misc_feature    complement(join(71959..72024,72163..72228,72322..72378,
FT                   72391..72456,72517..72582,72667..72732))
FT                   /note="6 probable transmembrane helices predicted for
FT                   BP1069 by TMHMM2.0 at aa 24-46, 74-96, 116-138, 142-161,
FT                   192-214 and 260-282"
FT   misc_feature    complement(72055..72306)
FT                   /note="HMMPfam hit to PF00528, Binding-protein-dependent
FT                   transport systems inner membrane component"
FT   misc_feature    complement(72217..72303)
FT                   /note="ScanRegExp hit to PS00402, Binding-protein-dependent
FT                   transport systems inner membrane comp. sign."
FT   misc_feature    complement(72658..72783)
FT                   /note="Signal peptide predicted for BP1069 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.964) with cleavage site
FT                   probability 0.379 between residues 45 and 46"
FT   CDS             complement(72826..73842)
FT                   /transl_table=11
FT                   /gene="pstC"
FT                   /gene_synonym="phoW"
FT                   /locus_tag="BP1070"
FT                   /product="phosphate transport system permease protein"
FT                   /note="Similar to Escherichia coli phosphate transport
FT                   system permease protein PstC or PhoW or B3727 or Z5218 or
FT                   Ecs4663 SW:PSTC_ECOLI (P07653) (319 aa) fasta scores: E():
FT                   9.9e-70, 64.56% id in 302 aa, and to Pasteurella multocida
FT                   PstC or Pm0435 TR:Q9CNJ5 (EMBL:AE006079) (320 aa) fasta
FT                   scores: E(): 1.4e-82, 71.33% id in 307 aa"
FT                   /db_xref="GOA:Q7VZ64"
FT                   /db_xref="InterPro:IPR011864"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ64"
FT                   /protein_id="CAE41369.1"
FT                   /translation="MSAVMDNSVPLPSSTADSTTTGTPSPMKQNNNALMDALFKNLTRT
FT                   FAFLVFILLAAIMISLIYGSRESLAKYGLSFLWLNDWDPVQQNYGAVVPIIGTLLTSFI
FT                   ALLIAVPVSFGIAIFLIELAPTWLRRPLGTAVEMLAAIPSIIYGMWGLFVFVPVFQQYV
FT                   QPALIATLGSVPIIGGLFAGPPFGIGIFTAGLILSIMIIPFIAAVMRDVFELVPPMLKE
FT                   SAYGLGSTTWEVMWRVVLPFTKSGVIGGIMLGLGRALGETMAVTFVIGNAFRWSGSLFS
FT                   PGNSIASALANEFNEAGGIQKSALLELGLILFLITTVVLAFSKMLLVRLSRAEGRQA"
FT   misc_feature    complement(join(72853..72918,73036..73101,73219..73284,
FT                   73297..73347,73369..73434,73480..73545,73651..73716))
FT                   /note="7 probable transmembrane helices predicted for
FT                   BP1070 by TMHMM2.0 at aa 42-64, 99-121, 136-158, 165-182,
FT                   186-208, 247-269 and 308-330"
FT   misc_feature    complement(72979..73209)
FT                   /note="HMMPfam hit to PF00528, Binding-protein-dependent
FT                   transport systems inner membrane component"
FT   misc_feature    complement(73120..73206)
FT                   /note="ScanRegExp hit to PS00402, Binding-protein-dependent
FT                   transport systems inner membrane comp. sign. Confirmed by
FT                   InterPro eMOTIF pattern match."
FT   CDS             complement(73977..75017)
FT                   /transl_table=11
FT                   /gene="pstS"
FT                   /gene_synonym="phoS"
FT                   /locus_tag="BP1071"
FT                   /product="phosphate-binding periplasmic protein precursor"
FT                   /note="Similar to Escherichia coli phosphate-binding
FT                   periplasmic protein precursor PstS or PhoS or B3728
FT                   SW:PSTS_ECOLI (P06128) (346 aa) fasta scores: E(): 1.2e-71,
FT                   56.67% id in 337 aa, and to Pasteurella multocida PstS or
FT                   Pm0436 TR:Q9CNJ4 (EMBL:AE006079) (403 aa) fasta scores:
FT                   E(): 1.3e-89, 69.97% id in 333 aa"
FT                   /db_xref="GOA:Q7VZ63"
FT                   /db_xref="HSSP:1IXH"
FT                   /db_xref="InterPro:IPR005673"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ63"
FT                   /protein_id="CAE41370.1"
FT                   /translation="MFKRVFKQISIGAALSAAVFAAQAADVTGAGASFPYPIYAKWASD
FT                   YKAATNNAVNYQSIGSGGGQQQIKAKTVDFGASDDPLKAEDLEKNGLLQFPAVIGGTVP
FT                   VINIDGIAPGQLKLSGAVLADIFLGKVKKWDDAAIKALNPDLKLPSADIVVVHRSDGSG
FT                   TTFGWTNYLSKVSSAWKEQVGEGKAVKWPTGQGGKGNEGVAAYVGQLKNSIGYVEYAYA
FT                   KQNKLAWTQLQNKDGKFVQPEQKAFAAAAANADWKSAPGMGVVLTNEPGADSWPVTAAT
FT                   FILVHKSQDKPVQGRAVLEFFDWAFKNGAKSAEALDYVPLPEAVTTEIRAAWGEVKGAD
FT                   GKAVWQ"
FT   misc_feature    complement(74112..74951)
FT                   /note="HMMPfam hit to PF01449, Phosphate-binding protein"
FT   misc_feature    complement(74946..75017)
FT                   /note="Signal peptide predicted for BP1071 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.993 between residues 24 and 25"
FT   CDS             complement(75212..77293)
FT                   /transl_table=11
FT                   /gene="ppk"
FT                   /locus_tag="BP1072"
FT                   /product="polyphosphate kinase"
FT                   /EC_number="2.7.4.1"
FT                   /note="Similar to Escherichia coli, and polyphosphate
FT                   kinase Ppk or B2501 or Z3764 or Ecs3363 SW:PPK_ECOLI
FT                   (P28688) (687 aa) fasta scores: E(): 1.4e-70, 33.66% id in
FT                   698 aa, and to Neisseria meningitidis polyphosphate kinase
FT                   Ppk or Nmb1900 SW:PPK_NEIMB (Q9JXS9) (685 aa) fasta scores:
FT                   E(): 1.9e-142, 54.07% id in 688 aa"
FT                   /db_xref="GOA:Q7VZ62"
FT                   /db_xref="InterPro:IPR003414"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ62"
FT                   /protein_id="CAE41371.1"
FT                   /translation="MTSRPPSEPLLLNRELSLLKFNERVLAMAENPRVPLLERLRYVCI
FT                   VSSNLDEFFEIRISTLKEQQRQTPTLVGPDGMTADEAFERVQVKVHALVASQYALLNDD
FT                   ILPRLQAEGIVLHHASEWNAQQQEWAREVFNRDVMPLLTPIGLDPAHPFPRVYNKSLNF
FT                   IVALSGADAFGRQASIAVVQAPRALPRLIKMPPEISGHPDGYILLTSLLRAFVGELFPG
FT                   LEMLGCYQWRVTRNSDLFVDEEEVTNLRHALQGELSQRNFGAAVRLEVDKLTPPDLEAY
FT                   LQREFSLAPEDTYRVSGPVNLSRLMQLCNSNTRPDLLFPAYLAPVPAPFDRVGEKPAEL
FT                   FAAVAEQDRLLHHPYQSFQPVIDFLTAAALDPDVMAIKQTIYRTGEDSELMQILLAAAC
FT                   AGKEVTVVVELMARFDEQTNINWAARLEEVGAHVVYGVVAHKTHAKMALVLRREKGRLR
FT                   RYAHLGTGNYHPRTARLYTDFGLLTADPRLCEDMDKVFTQLTGLGARRSLKALLQSPFS
FT                   LHDGMVSLIRAETRAARAGKRARIMAKMNSLLEVQVIEELYKASQAGVKIDLIVRGVCA
FT                   LRAGVPGLSENIRVRSIVGRFLEHSRVFYFYADGAETVYLSSADWMDRNFFRRVEIAFP
FT                   VYDKTLRKRVIDEAFTYALRDNQLAWQQQADGTYARVRNRREAYDVQEALIQRLGQDG"
FT   misc_feature    complement(75221..77278)
FT                   /note="HMMPfam hit to PF02503, Polyphosphate kinase"
FT   CDS             77529..79022
FT                   /transl_table=11
FT                   /gene="ppx"
FT                   /locus_tag="BP1073"
FT                   /product="exopolyphosphatase"
FT                   /EC_number="3.6.1.11"
FT                   /note="Similar to Escherichia coli, and exopolyphosphatase
FT                   Ppx or B2502 or Z3765 or Ecs3364 SW:PPX_ECOLI (P29014) (512
FT                   aa) fasta scores: E(): 1.8e-68, 40.88% id in 499 aa, and to
FT                   Neisseria meningitidis exopolyphosphatase Nmb1467 TR:Q9JYR3
FT                   (EMBL:AE002496) (502 aa) fasta scores: E(): 1.2e-86, 47.18%
FT                   id in 498 aa"
FT                   /db_xref="GOA:Q7VZ61"
FT                   /db_xref="InterPro:IPR003695"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ61"
FT                   /protein_id="CAE41372.1"
FT                   /translation="MDHLLAAVDLGSNSFRLSIGRVVQQDGTAQIYQIDRLKETVRLAA
FT                   GLDQDKNLGEDALARALAVLERFGERLRSFHPSRVRAVATNTFRVARNTRDFLPRAERA
FT                   LGFPIEVIAGREEARLIFSGVAHSLPPSLNRRLVIDIGGGSTEVIIGKGVEPNLMSSLY
FT                   MGCVSFSRQFFGDGVVDSHQMKQAELAARREIEVISKQYRKTGWKEAYGSSGTAKALYA
FT                   ILTECGFSTRGITRAGLAKLKDRIIRSGRVIPAELPGIKLERADVLPGGLAIMSALFDE
FT                   LNIDVMHTGDGALRLGVLYDLLGRDDEHDKRHESVQQFMKRYHVDANQARRVRQAALAL
FT                   FDVLLPDGDGHERAELRLALGWAADLHEVGLSIAHNAYHKHTAYVLEHADMPGFSNDEQ
FT                   ELLALLALGHHGKLSKLESLVANRSQWIAILCLRLAALLFRRREDITPLPLAVSIKGTS
FT                   IVVRAQQAWLNRHPLSDFTLRAEDGEWSKVGFSFELLET"
FT   misc_feature    77580..78446
FT                   /note="HMMPfam hit to PF02541, Ppx/GppA phosphatase family"
FT   CDS             complement(79253..80047)
FT                   /transl_table=11
FT                   /locus_tag="BP1074"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Streptomyces coelicolor hypothetical 28.0
FT                   kDa protein Scm10.09C TR:Q9RCY9 (EMBL:AL133469) (256 aa)
FT                   fasta scores: E(): 7.9e-44, 50% id in 250 aa, and to
FT                   Pseudomonas aeruginosa hypothetical protein Pa4350
FT                   TR:Q9HW51 (EMBL:AE004851) (251 aa) fasta scores: E():
FT                   2.3e-37, 43.9% id in 246 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ60"
FT                   /protein_id="CAE41373.1"
FT                   /translation="MLELVRIDTGSTAATAWPGAAPRTLAVGLARTAEEVEQIQRLRYD
FT                   VFTEDMGAVFPQAQDGVEQDRFDQWCEHLMVRELDTGRVVGTYRILTPEKAREAGGYYS
FT                   ESEFDLSGLGALREQLVEVGRSCTHADYRNGAVIMLLWSGLAEYLRRGGYEYVLGCASV
FT                   SLRDDGVTAAEVWRNVARHLDDPALPRVRPLHRYPIERLNSTLPARVPPLIKGYLKLGA
FT                   KVCGEPAWDPDFNAADFPVLLSMAGMDERYRRHFGLDREARR"
FT   CDS             complement(80268..81626)
FT                   /transl_table=11
FT                   /gene="mrsA"
FT                   /locus_tag="BP1075"
FT                   /product="phosphoglucomutase/phosphomannomutase"
FT                   /note="Similar to Escherichia coli protein MrsA or B3176
FT                   SW:MRSA_ECOLI (P31120) (445 aa) fasta scores: E(): 3.7e-80,
FT                   55.94% id in 454 aa, and to Neisseria meningitidis putative
FT                   phosphoglucomutase/phosphomannomutase Nma1949 TR:Q9JT71
FT                   (EMBL:AL162757) (444 aa) fasta scores: E(): 8.4e-88, 55.75%
FT                   id in 452 aa"
FT                   /db_xref="GOA:Q7VZ59"
FT                   /db_xref="InterPro:IPR006352"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VZ59"
FT                   /protein_id="CAE41374.1"
FT                   /translation="MSQRKYFGTDGVRGEVGGPVINAAFALRLGYAAGRVLAREHREHA
FT                   SGRGRNRPQVVIGKDTRISGYMLESALEAGLSAAGIDVLLAGPVPTPAVAYLTRTLRLA
FT                   AGIVISASHNPYQDNGIKFFSAHGMKLPDDIEAAIEQAVDEPLGCVGSEELGRARRMAD
FT                   AQGRYIEFCKSTFPHDLDLNGLKLVVDAAHGAAYNVAPHVFRELGAEVHAIGVSPDGFN
FT                   INKGVGALHPESLAEEVRARGADLGIALDGDADRLQMVDGTGRIYNGDELLYAIVRERM
FT                   QRGPVAGVVGTLMTNYGLERQLQQIGVGFERANVGDRYVLEQMQARGWLYGGESSGHLL
FT                   CLDCHTTGDGTIAALQVLTALRRADATLAEWVADLRMYPQRMINVPLAPGLDWKTHDGL
FT                   ARARGAVEAELAGRGRVLIRASGTEPKLRLMVEAEDEALAQASAQKLADSLGA"
FT   misc_feature    complement(80307..81620)
FT                   /note="HMMPfam hit to PF00408,
FT                   Phosphoglucomutase/phosphomannomutase, C-terminal domain"
FT   misc_feature    complement(80589..80606)
FT                   /note="ScanRegExp hit to PS00190, Cytochrome c family
FT                   heme-binding site signature."
FT   misc_feature    complement(81282..81311)
FT                   /note="ScanRegExp hit to PS00710, Phosphoglucomutase and
FT                   phosphomannomutase phosphoserine signature. Confirmed by
FT                   InterPro eMOTIF pattern match."
FT   CDS             complement(81623..82465)
FT                   /transl_table=11
FT                   /gene="folP"
FT                   /gene_synonym="dhpS"
FT                   /locus_tag="BP1076"
FT                   /product="dihydropteroate synthase"
FT                   /EC_number="2.5.1.15"
FT                   /note="Similar to Escherichia coli dihydropteroate synthase
FT                   FolP or DhpS or B3177 SW:DHPS_ECOLI (P26282) (282 aa) fasta
FT                   scores: E(): 2.1e-44, 48.47% id in 262 aa, and to
FT                   Pseudomonas aeruginosa dihydropteroate synthase FolP or
FT                   Pa4750 TR:Q9HV49 (EMBL:AE004888) (283 aa) fasta scores:
FT                   E(): 4.9e-49, 51.3% id in 269 aa"
FT                   /db_xref="GOA:Q7VZ58"
FT                   /db_xref="HSSP:1EYE"
FT                   /db_xref="InterPro:IPR006390"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ58"
FT                   /protein_id="CAE41375.1"
FT                   /translation="MANNFQCGRFEFDLERPLVMGIVNVTPDSFSDGGEHADTDSAIAH
FT                   ARQLIDEGAHILDLGGESTRPGAQPVSAADELARILPLIEGLRDCGVPLSIDTFKPEVM
FT                   RAVLDAGADMINDIYGFRQPGAIDAVARSRCGLCVMHMKGEPRTMQEAPEYADLMGEIG
FT                   VFLGARAQRLRAAWVDPRRIVLDPGFGFGKTMDQNYQLLRRLASLRVSSYPLLVGVSRK
FT                   SMIGAATGKPVGDRLAGSVAAALACVARGAAIVRVHDVAATVDALKVWQAAEQGAVPT"
FT   misc_feature    complement(81650..82408)
FT                   /note="HMMPfam hit to PF00809, Dihydropteroate synthase"
FT   misc_feature    complement(82268..82309)
FT                   /note="ScanRegExp hit to PS00793, Dihydropteroate synthase
FT                   signature 2."
FT   misc_feature    complement(82364..82411)
FT                   /note="ScanRegExp hit to PS00792, Dihydropteroate synthase
FT                   signature 1. Confirmed by InterPro eMOTIF pattern match."
FT   CDS             complement(82484..84370)
FT                   /transl_table=11
FT                   /gene="ftsH"
FT                   /gene_synonym="hflB"
FT                   /gene_synonym="mrsC"
FT                   /gene_synonym="tolZ"
FT                   /locus_tag="BP1077"
FT                   /product="cell division protein"
FT                   /EC_number="3.4.24.-"
FT                   /note="Similar to Escherichia coli cell division protein
FT                   FtsH or HflB or MrsC or TolZ or B3178 SW:FTSH_ECOLI
FT                   (P28691) (644 aa) fasta scores: E(): 1.2e-139, 64.32% id in
FT                   611 aa, and to Neisseria meningitidis cell division protein
FT                   FtsH or Nmb0798 TR:Q9K027 (EMBL:AE002433) (655 aa) fasta
FT                   scores: E(): 2.7e-144, 66.28% id in 608 aa"
FT                   /db_xref="GOA:Q7VZ57"
FT                   /db_xref="HSSP:1IY1"
FT                   /db_xref="InterPro:IPR003960"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ57"
FT                   /protein_id="CAE41376.1"
FT                   /translation="MNNSFSKVAVWMVIALVLFTVFKQFDGRAQTQDGVSYTQFMDDAK
FT                   AGRIRKVDVQGDVLYVTPDAGRPYSLTSPGDLWMVSDLLKYGVQVSGKAREEPSLLMSI
FT                   FVSWFPMLLLIGVWIFFMRQMQGGGRGGAFSFGKSRARMLDENTNQVTFADVAGCDEAK
FT                   EDVQELVDFLRDPSKFQKLGGRIPRGVLMVGSPGTGKTLLAKAIAGEAKVPFFSISGSD
FT                   FVEMFVGVGAARVRDMFENAKKHAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQML
FT                   VEMDGFESGQGVIVIAATNRPDVLDPALLRPGRFDRQVVVPLPDIRGREQILKVHMRKV
FT                   PLSPNVDATILARGTPGFSGADLANLVNEAALFAARRNGRTVDMSDFEKAKDKIIMGAE
FT                   RRSIVMPEEERKNTAYHESGHAIVARMLPKTDPVHKVTIIPRGRALGVTMQLPETDRYS
FT                   MDKERLLNTIAVLFGGRIAEEIFMNQMTTGASNDFERATAIARDIVTRYGMTDELGPMV
FT                   YAENEGEVFLGRSVTKTTHVSEATMQKVDSEIRRIIDEQYGVARKILEDNRARVEVMTS
FT                   ALLEWETIDADQIDDIVNDRPPRPPKTPQGPSDTFDTPPTGLAAGGNTAAAV"
FT   misc_feature    complement(82595..83227)
FT                   /note="HMMPfam hit to PF01434, Peptidase family M41"
FT   misc_feature    complement(83243..83806)
FT                   /note="HMMPfam hit to PF00004, ATPase family associated
FT                   with various cellular activities (AAA)"
FT   misc_feature    complement(83438..83494)
FT                   /note="ScanRegExp hit to PS00674, AAA-protein family
FT                   signature. Confirmed by InterPro eMOTIF pattern match."
FT   misc_feature    complement(83768..83791)
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   misc_feature    complement(83954..83977)
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   misc_feature    complement(join(84005..84070,84305..84355))
FT                   /note="2 probable transmembrane helices predicted for
FT                   BP1077 by TMHMM2.0 at aa 5-22 and 100-122"
FT   misc_feature    complement(84278..84370)
FT                   /note="Signal peptide predicted for BP1077 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.702) with cleavage site
FT                   probability 0.419 between residues 31 and 32"
FT   CDS             complement(84608..85240)
FT                   /transl_table=11
FT                   /gene="rrmJ"
FT                   /gene_synonym="ftsJ"
FT                   /gene_synonym="mrsF"
FT                   /locus_tag="BP1078"
FT                   /product="ribosomal RNA large subunit methyltransferase j"
FT                   /EC_number="2.1.1.-"
FT                   /note="Similar to Escherichia coli ribosomal RNA large
FT                   subunit methyltransferase J RrmJ or FtsJ or MrsF or B3179
FT                   or Z4541 or Ecs4058 SW:RRMJ_ECOLI (P28692) (209 aa) fasta
FT                   scores: E(): 1.1e-30, 46.07% id in 204 aa, and to Neisseria
FT                   meningitidis putative cell division protein FtsJ or Nma1008
FT                   or Nmb0799 TR:Q9JQX5 (EMBL:AL162754) (206 aa) fasta scores:
FT                   E(): 1.3e-39, 53.39% id in 206 aa"
FT                   /db_xref="GOA:Q7VZ56"
FT                   /db_xref="HSSP:1EJ0"
FT                   /db_xref="InterPro:IPR002877"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VZ56"
FT                   /protein_id="CAE41377.1"
FT                   /translation="MAKNKFSKDWIHQHINDPYVKLAQQKGYRARAAFKLLEILDAEKL
FT                   MRRGDVVVDLGSAPGSWSQVARERLAGPGGVVDGRIIALDLLPMEPVAGVEFIQGDFRE
FT                   EEVLEQLARMVDGQPVDLVISDMAPNLSGVGVADSARIQHVCELALEFACAHLKPNGAL
FT                   IVKAFHGSGFSQIVQSYKQRFKRVVERKPKASRDKSSETFLVARDLK"
FT   misc_feature    complement(84611..85207)
FT                   /note="HMMPfam hit to PF01728, FtsJ-like methyltransferase"
FT   CDS             85259..85861
FT                   /transl_table=11
FT                   /locus_tag="BP1079"
FT                   /product="conserved hypothetical protein"
FT                   /note="Its N-terminal region is similar to Neisseria
FT                   meningitidis hypothetical protein Nmb0800 TR:Q9K026
FT                   (EMBL:AE002433) (94 aa) fasta scores: E(): 2.7e-09, 47.87%
FT                   id in 94 aa, and to Escherichia coli hypothetical protein
FT                   YhbY or B3180 or Z4542 or Ecs4059 SW:YHBY_ECOLI (P42550)
FT                   (97 aa) fasta scores: E(): 1.1e-07, 46.59% id in 88 aa"
FT                   /db_xref="GOA:Q7VZ55"
FT                   /db_xref="HSSP:1JO0"
FT                   /db_xref="InterPro:IPR001890"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ55"
FT                   /protein_id="CAE41378.1"
FT                   /translation="MPILELTSRERSDLRSAAHPLRPVVLIGDNGLTDAVLKEIDLALT
FT                   AHELIKVRAGGDDREAREAMLATICDTLSCAAVHHLGKTLILFRPDLRAAAAKAAADTP
FT                   AKRRPSEPHTPKKMAAEGKRLTKTRPARKAAEAAAPAAGARPGRDDLNQAGRPARPSTR
FT                   KASPGHAIPRRSGSALSLRAGARGGLAGRKPARANKR"
FT   misc_feature    85313..85525
FT                   /note="HMMPfam hit to PF01985, Uncharacterised protein
FT                   family UPF0044"
FT   misc_feature    85487..85510
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   repeat_region   85911..85942
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   85911..86963
FT   CDS             86013..86963
FT                   /transl_table=11
FT                   /locus_tag="BP1080"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTI6"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTI6"
FT                   /protein_id="CAE41379.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIVHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS"
FT   misc_feature    86271..86336
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   misc_feature    86394..86927
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   repeat_region   complement(86932..86963)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             86960..87544
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP1081"
FT                   /product="C-terminal region of a putative membrane protein
FT                   (pseudogene)"
FT                   /note="Pseudogene. This is the C-terminal region of
FT                   BP2524A, which was disrupted by the insertion of IS481
FT                   element. Similar to Rhizobium loti Mlr6486 protein
FT                   TR:Q989C5 (EMBL:AP003009) (305 aa) fasta scores: E():
FT                   1.9e-10, 32.05% id in 156 aa, and to Caulobacter crescentus
FT                   hypothetical protein Cc2940 TR:Q9A497 (EMBL:AE005958) (362
FT                   aa) fasta scores: E(): 9.2e-09, 29.48% id in 173 aa"
FT   misc_feature    87455..87523
FT                   /note="2 probable transmembrane helices predicted for
FT                   BP1081 by TMHMM2.0 at aa 10-32 and 160-182"
FT   CDS             complement(87766..88566)
FT                   /transl_table=11
FT                   /locus_tag="BP1083"
FT                   /product="putative membrane protein"
FT                   /note="no significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ54"
FT                   /protein_id="CAE41381.1"
FT                   /translation="MQAVSLPAISGWQWVRDGLRLFMKQPLAMFTWAMAISLLLLFATY
FT                   TPLVGPLLFVALMPSITLMTLSACKHVEADRVMLPSMWLQPLKKPGVFKKLFLMGMLYV
FT                   GLCLAAGLLAFLPFSSSLAEGVRMASANNLAPIMTAMRAPLLVFTALYVIIAAVFWHAP
FT                   VLVGWHGLRLLQALFFSGIACWRNKWPFLVYGVVWILVFLFIDLCIGLLIGMGVPDTLA
FT                   GTLQVPVTIIAGGVLYCSFYPAYTSVFGVNDAHAGLDNSDSAHA"
FT   misc_feature    complement(join(87814..87879,87925..87990,88054..88119,
FT                   88213..88278,88360..88425,88438..88503))
FT                   /note="6 probable transmembrane helices predicted for
FT                   BP1083 by TMHMM2.0 at aa 21-43, 47-69, 96-118, 149-171,
FT                   192-214 and 229-251"
FT   CDS             complement(88610..89596)
FT                   /transl_table=11
FT                   /gene="thrB"
FT                   /locus_tag="BP1084"
FT                   /product="homoserine kinase"
FT                   /EC_number="2.7.1.39"
FT                   /note="Similar to Pseudomonas aeruginosa homoserine kinase
FT                   ThrB or Pa5495 SW:KHSE_PSEAE (P29364) (316 aa) fasta
FT                   scores: E(): 6.6e-40, 43.17% id in 315 aa, and to
FT                   Caulobacter crescentus homoserine kinase Cc3364 TR:Q9A342
FT                   (EMBL:AE005998) (317 aa) fasta scores: E(): 4.3e-38, 39.31%
FT                   id in 323 aa"
FT                   /db_xref="GOA:Q7VZ53"
FT                   /db_xref="InterPro:IPR005280"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ53"
FT                   /protein_id="CAE41382.1"
FT                   /translation="MAVFTSVSDQDARTLLARFDLGDLVSLRGITAGIENTNFFLNTTR
FT                   GEYVLTLFEVLTQEQLPFYIELMYHLAARGIPVPQPQTLRDGTRLTTLHGKPCAIVTRL
FT                   PGGYEPAPGPDHCRLAGATLARAHLAGQDFPLRQPNLRGLPWWQATAPKVLPFLEPGQA
FT                   RLLEAELADQQAHAATALWQSLPSGPAHCDLFRDNVLFAGTFDDPLMGGFIDFYFAGCD
FT                   TWLFDVAVSVNDWCIVRDTGEFVPELVHGWLQAYAEVRPFTDAERQAWPVMLRAAALRF
FT                   WLSRLYDFYLPRPAQTLKPHDPRHFERVLQARHRHPAPDLPKSEAAA"
FT   CDS             89736..90749
FT                   /transl_table=11
FT                   /locus_tag="BP1085"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein Pa2795 TR:Q9I048 (EMBL:AE004707) (332 aa) fasta
FT                   scores: E(): 4.8e-62, 54.25% id in 317 aa, and to Neisseria
FT                   meningitidis hypothetical protein Nma2139 TR:Q9JST8
FT                   (EMBL:AL162758) (336 aa) fasta scores: E(): 5.6e-62, 51.54%
FT                   id in 324 aa"
FT                   /db_xref="GOA:Q7VZ52"
FT                   /db_xref="InterPro:IPR018517"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ52"
FT                   /protein_id="CAE41383.1"
FT                   /translation="MSSPDWRLCVAPMIDVTDRHCRYFHRLLAPRARLYTEMITTGALL
FT                   HGDVARHLDFDAAEHPVALQLGGSEPDALAQAARLGRQWGYDEINLNCGCPSERVQRGA
FT                   FGACLMAEPALVADCMKAMQDAVDIPVTVKHRLGLDYDESYGFVRDFVGQIYDTGCRVF
FT                   VVHARNAVLKGLSPKDNREIPPLRYDVARQLKRDFPDCVIVLNGGLADAQAAQAVAGEF
FT                   DGVMLGRAAWHTPRVLSEVSLQWWPAIRLPSDAQVVDAMMQYAATQIARGVPLRVMTRP
FT                   LLGLVNGQAGARRWRRLLSDPVRLAANDPSLLYEAWRSLQGAPRERDACADPLPAV"
FT   misc_feature    89760..90698
FT                   /note="HMMPfam hit to PF01207, Uncharacterized protein
FT                   family UPF0034"
FT   misc_feature    90000..90056
FT                   /note="ScanRegExp hit to PS01136, Uncharacterized protein
FT                   family UPF0034 signature. Confirmed by InterPro eMOTIF
FT                   pattern match."
FT   CDS             complement(90746..91696)
FT                   /transl_table=11
FT                   /locus_tag="BP1086"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7VZ51"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ51"
FT                   /protein_id="CAE41384.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWQRPHQGIGRAVPISRLNLDEYNLLTVHS"
FT   repeat_region   90746..90777
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   complement(90746..91798)
FT   misc_feature    complement(90782..91315)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   misc_feature    complement(91373..91438)
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   repeat_region   complement(91767..91798)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(91809..92267)
FT                   /transl_table=11
FT                   /locus_tag="BP1087"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Mycobacterium tuberculosis hypothetical
FT                   15.1 kDa protein Rv2406c or Mtcy253.14 TR:P71737
FT                   (EMBL:Z81368) (142 aa) fasta scores: E(): 1.6e-11, 26.61%
FT                   id in 139 aa, and to Pseudomonas aeruginosa hypothetical
FT                   protein Pa0250 TR:Q9I6N9 (EMBL:AE004463) (144 aa) fasta
FT                   scores: E(): 5e-10, 33.09% id in 142 aa"
FT                   /db_xref="InterPro:IPR000644"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ50"
FT                   /protein_id="CAE41385.1"
FT                   /translation="MLKVSEILRVKGDTLYTASPDTHVSVAVQTMSEQDIGSLVIMESG
FT                   MLAGMLTFREIIRHIDQHGGNVGDTTIRAIMDDAPVSVSPNTSADEVQRLMLEKHARYI
FT                   PVMDGPTLLGVISFYDMAQAIVAAQQFENNMLKAYIRDWPMESAPSKP"
FT   misc_feature    complement(91890..92048)
FT                   /note="HMMPfam hit to PF00571, CBS domain"
FT   misc_feature    complement(92085..92243)
FT                   /note="HMMPfam hit to PF00571, CBS domain"
FT   CDS             complement(92304..93617)
FT                   /transl_table=11
FT                   /locus_tag="BP1088"
FT                   /product="putative membrane protein"
FT                   /note="Its N-terminal region is similar to Escherichia coli
FT                   ribonuclease BN rbn or B3886 or Z5425 or Ecs4809
FT                   SW:RBN_ECOLI (P32146) (290 aa) fasta scores: E(): 1.8e-33,
FT                   39.2% id in 250 aa, and to Neisseria meningitidis
FT                   ribonuclease BN, putative Nmb0524 TR:Q9K0R0 (EMBL:AE002408)
FT                   (406 aa) fasta scores: E(): 1.2e-36, 36.36% id in 396 aa"
FT                   /db_xref="GOA:Q7VZ49"
FT                   /db_xref="InterPro:IPR004664"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ49"
FT                   /protein_id="CAE41386.1"
FT                   /translation="MEPHAESAAAGQAAPPEKRRASWFTRMGRVVRFAGQRADEQKLLQ
FT                   VASSLTFTTVLAIVPMLAVVLSLFTAFPVFQEFRVALEDFLANSLMPPSVSDNIMDYLN
FT                   QFARQATRLTAIGGAFLIVTSLLLIMTIDKTFNDIWQVTRQRPLPQRALVYWAVITLGP
FT                   VVAGASLWATSFVARESLGLVRDVPEAVSVAISFIPLVLTGLGFAALFVVVPNRRVYWK
FT                   DALVGGFGTAIVLELMKAGFAYYLTRFPAYTVIYGAFATLPIFLLWIYLSWLAVLFGAT
FT                   VAASAPLIRLGRWEINRHAGAPFIDALGVLRVLHAAQGSRPAGRSANALAKRLRLHHDE
FT                   LNAVLEALEDMGLVARTAEQRWVLTCDPRTTTLEPVFDRFLLDRGQPRLRDEPEIAAVA
FT                   AGVLGQGPDPTLADLAGVAQNTDIGPAAAVLQLETGKK"
FT   misc_feature    complement(join(92751..92816,92877..92942,92982..93047,
FT                   93093..93158,93222..93287,93414..93479))
FT                   /note="6 probable transmembrane helices predicted for
FT                   BP1088 by TMHMM2.0 at aa 46-68, 110-132, 153-175, 190-212,
FT                   225-247 and 267-289"
FT   CDS             93635..94006
FT                   /transl_table=11
FT                   /locus_tag="BP1089"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Neisseria meningitidis hypothetical
FT                   protein Nma0801 TR:Q9JVK4 (EMBL:AL162754) (117 aa) fasta
FT                   scores: E(): 1.1e-13, 45.45% id in 99 aa, and to Vibrio
FT                   cholerae hypothetical protein Vc2167 TR:Q9KQ37
FT                   (EMBL:AE004288) (145 aa) fasta scores: E(): 0.00097, 31.13%
FT                   id in 106 aa"
FT                   /db_xref="InterPro:IPR018643"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ48"
FT                   /protein_id="CAE41387.1"
FT                   /translation="MNAELNPTLRRGAVACLLALIVLCVAWETVLAPIRPGGSWLFLKA
FT                   LPLAFPLRGVLRGNLYTFQWAAMLVLLYLMEGVVRAMSDPAPLSAALGGVEIVLSGGFF
FT                   LCAILYVRPAKRAARRSRA"
FT   misc_feature    93635..93712
FT                   /note="Signal peptide predicted for BP1089 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.844) with cleavage site
FT                   probability 0.744 between residues 26 and 27"
FT   misc_feature    join(93668..93736,93899..93967)
FT                   /note="2 probable transmembrane helices predicted for
FT                   BP1089 by TMHMM2.0 at aa 12-34 and 89-111"
FT   CDS             94003..95466
FT                   /transl_table=11
FT                   /locus_tag="BP1090"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Escherichia coli hypothetical protein
FT                   YdiU or B1706 SW:YDIU_ECOLI (P77649) (478 aa) fasta scores:
FT                   E(): 1.9e-77, 48.33% id in 480 aa, and to Pseudomonas
FT                   aeruginosa hypothetical protein Pa5023 TR:Q9HUE6
FT                   (EMBL:AE004915) (486 aa) fasta scores: E(): 1.1e-76, 46.15%
FT                   id in 494 aa"
FT                   /db_xref="InterPro:IPR003846"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VZ47"
FT                   /protein_id="CAE41388.1"
FT                   /translation="MKWLRLQDLPTDNSFAALPAEFYTRLQPRPPAAPRLLHANAEAAA
FT                   LIGLDPAEFSTQAFLDVFSGHAPLPGGDTLAAVYSGHQFGVWAGQLGEVRGPAGGWELQ
FT                   LKGAGMTPYSRMGDGRAVLRSSVREYLASEAMHGLGIPTTRSLALVVSDDPVMRETVET
FT                   AAVVTRMAPSFVRFGSFEHWSARRQPEQLRVLADYVIDRFYPECRVAGAGRLDGEHGEI
FT                   LGLLAAVTRRTALLMADWQAVGFCHGVMNTDNMSILGLTLDYGPYGFMDTFQLGHICNH
FT                   SDSEGRYAWNRQPSVGLWNLYRLASSLHTLAPDPEALRAVLDGYEAVFTQAFHGRMAGK
FT                   LGLPQFLPEDETLLDDLLQLMHQQGADFTLAFRRLGEAVRGQRQPFEDSFIDRAAAGAW
FT                   YDRLAARHASDGRAAQARAAAMDEVNPLYVLRNHLAEQAIRAAARGDAGEIDILLKLLR
FT                   NPYKHQPGYDAYAGLAPDWAAGLEVSCSS"
FT   misc_feature    94039..95385
FT                   /note="HMMPfam hit to PF02696, Uncharacterized ACR,
FT                   YdiU/UPF0061 family"
FT   CDS             95607..96335
FT                   /transl_table=11
FT                   /locus_tag="BP1091"
FT                   /product="probable two-component response regulator"
FT                   /note="Similar to Rhodobacter sphaeroides
FT                   DmsO/TmaO-response regulator DorR TR:O30741 (EMBL:AF016236)
FT                   (232 aa) fasta scores: E(): 8.7e-18, 33.76% id in 234 aa,
FT                   and to Pseudomonas aeruginosa probable two-component
FT                   response regulator Pa4983 TR:Q9HUI2 (EMBL:AE004911) (244
FT                   aa) fasta scores: E(): 2.2e-17, 33.33% id in 243 aa"
FT                   /db_xref="GOA:Q7VZ46"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ46"
FT                   /protein_id="CAE41389.1"
FT                   /translation="MLVADGLLRIGLLEDDEDFRDELALGLGGYGFNVVCACGDAPSLY
FT                   RFLQSQSCDIVILDANVPGEDGFSVATRLRAQSTTGIVMLTGRGALEDRVRGLEGGADV
FT                   YLTKPVDLLELSSVIRSLARRMRLARGAQGQAPASAGDTQRGVGGWSLQEGGWVLVGPD
FT                   GVSLHLNAQERIFMTSLLQSGGDAVTRQMLAEAFQPGNPDDFEPRRVDVMVSRLRAKAQ
FT                   SAGFKLPVLSVRGQGYVFAA"
FT   misc_feature    95628..95963
FT                   /note="HMMPfam hit to PF00072, Response regulator receiver
FT                   domain"
FT   CDS             complement(96317..99166)
FT                   /transl_table=11
FT                   /locus_tag="BP1092"
FT                   /product="probable two-component histidine kinase"
FT                   /note="Similar to Escherichia coli sensor protein KdpD or
FT                   B0695 SW:KDPD_ECOLI (P21865) (894 aa) fasta scores: E():
FT                   6.1e-11, 30.9% id in 233 aa, and to Pseudomonas aeruginosa
FT                   hypothetical protein Pa1433 TR:Q9I3R4 (EMBL:AE004573) (650
FT                   aa) fasta scores: E(): 2.9e-27, 24.77% id in 654 aa"
FT                   /db_xref="GOA:Q7VZ45"
FT                   /db_xref="InterPro:IPR001633"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ45"
FT                   /protein_id="CAE41390.1"
FT                   /translation="MSISRRLFLSVVLLAGLLVIGTQAAGLAANYRASVERQKRHVETA
FT                   AASLAWVLSQSHTTPAQWQTLATDLQRHGGYALVRIQEHYTGRMIEAGQLSEAPARADG
FT                   SLQQGRASQIVATRTFRSADGTYVGSVAVYNPVIPILEAPFLTESVAQLVLIVAGLLIW
FT                   YSYMSRLHDRLQRGPLKRLAHNLAHIGQAGVDPKLAEGLPRELQPLGTALVQSHQRVHD
FT                   QLRQQRARIDALENETYHDPVTRLPNRKFFNESLRRAVQRDGGVDGHLLIFRQRDMAEI
FT                   NRQMKREATDQWLRLACAQLSKTIKEQAGAGAVLVRINGSDFAALLPGLPSPRAAVLAE
FT                   RLRRELRVLRLPLRTHGWCRWAMVLTPYTVGEQVSDILARLDHALMRAEIAESDEVEPA
FT                   FSQTGNRIDGEYGWQDILTRALEQHRFFLTLYPRQDAEGQVLHTEAQLTLRDQDSPEPL
FT                   HAQLFMPPAARLGLSADCDIQAIRMSMDQLVARDGDMVVRVSLPSLEQAHFLKRLEDVL
FT                   RDRPEQAGHLIIEIDAHGLVDYFHNVQALCEIAARTGVRVGVRRLSEQFAALERLHQLP
FT                   LAYLKIGGSFVQGITRSPGNQQLADTVIQVARTLDIPAYAEDAEEPVARELLQAIGFRL
FT                   MQEADNADFLAPRHNWIADLPAAPAAAEDNGDTAAHAPTRTRATDGRPWPPHELGMQRK
FT                   RQEQSDRRLAEVARALEAQRQVHALLSHELRTPAATISAAAQSLEIILAGSGQEVDSRL
FT                   ARIRRAVTRMIELMNQVLSPERLRDQALTLRPEPIELGELARDTVEGMRLDTAHPLVLN
FT                   AEAAVPAWCDPLLTALVLRNLIHNAVKYSPADQPVHIDVGLSYGAHGATAWVAVTDHGP
FT                   GISDDESQRIFEEHYRRAAHRETPGSGLGLHLARQICQSQDGTLTVQTQLGQGARFVMT
FT                   LPTPGQAYTDGGNAQAANT"
FT   misc_feature    complement(96362..96706)
FT                   /note="HMMPfam hit to PF02518, Histidine kinase-, DNA
FT                   gyrase B-, phytochrome-like ATPase"
FT   misc_feature    complement(96830..97033)
FT                   /note="HMMPfam hit to PF00512, His Kinase A
FT                   (phosphoacceptor) domain"
FT   misc_feature    complement(97250..97942)
FT                   /note="HMMPfam hit to PF00563, Domain of unknown function
FT                   2"
FT   misc_feature    complement(97982..98476)
FT                   /note="HMMPfam hit to PF00990, GGDEF domain"
FT   misc_feature    complement(99080..99145)
FT                   /note="1 probable transmembrane helix predicted for BP1092
FT                   by TMHMM2.0 at aa 7-29"
FT   misc_feature    complement(99095..99166)
FT                   /note="Signal peptide predicted for BP1092 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.656 between residues 24 and 25"
FT   repeat_region   99277..99308
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   99277..100329
FT   CDS             99379..100329
FT                   /transl_table=11
FT                   /locus_tag="BP1093"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTA3"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTA3"
FT                   /protein_id="CAE41391.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS"
FT   misc_feature    99637..99702
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   misc_feature    99760..100293
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   repeat_region   complement(100298..100329)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             100497..101321
FT                   /transl_table=11
FT                   /gene="livG"
FT                   /locus_tag="BP1094"
FT                   /product="high-affinity branched-chain amino acid transport
FT                   ATP-binding protein"
FT                   /note="Similar to Escherichia coli high-affinity
FT                   branched-chain amino acid transport ATP-binding protein
FT                   LivG or B3455 or Z4825 or Ecs4302 SW:LIVG_ECOLI (P22730)
FT                   (255 aa) fasta scores: E(): 7e-31, 41.73% id in 254 aa, and
FT                   to Pseudomonas aeruginosa high-affinity branched-chain
FT                   amino acid transport ATP-binding protein BraF or Pa1071
FT                   SW:BRAF_PSEAE (P21629) (255 aa) fasta scores: E(): 3.5e-34,
FT                   45.85% id in 253 aa"
FT                   /db_xref="GOA:Q7VZ44"
FT                   /db_xref="HSSP:1G6H"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ44"
FT                   /protein_id="CAE41392.1"
FT                   /translation="MAQSEQDPLLRVDGVTLAFGGVKALTGVGFAVSSGSITTVIGPNG
FT                   AGKTSLFNTISGFYTPDAGSIHFLGQDITRLPAPRRARLGLARSFQNIALFRGMTVLDN
FT                   IKLGRHAHLRSNVLDALLYLGRARREEVALRADIETRIIDFLEIDHIRHAPVAALSYGL
FT                   QKRVELARALAMQPRILMLDEPVAGMNREETEDMARFILDARAEWGVTVLMVEHDMGMV
FT                   MDLSDHVVVLNFGQVIADGTPAQVQADPEVIKAYLGAGEVGELRRRLAAQAA"
FT   misc_feature    100599..101201
FT                   /note="HMMPfam hit to PF00005, ABC transporter"
FT   misc_feature    100620..100643
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   CDS             101321..102199
FT                   /transl_table=11
FT                   /gene="livH"
FT                   /locus_tag="BP1095"
FT                   /product="high-affinity branched-chain amino acid transport
FT                   system permease protein"
FT                   /note="Similar to Escherichia coli high-affinity
FT                   branched-chain amino acid transport system permease protein
FT                   LivH or B3457 SW:LIVH_ECOLI (P08340) (308 aa) fasta scores:
FT                   E(): 4.1e-17, 33.88% id in 304 aa, and to Salmonella
FT                   typhimurium high-affinity branched-chain amino acid
FT                   transport system permease protein LivH or LivA
FT                   SW:LIVH_SALTY (P30295) (308 aa) fasta scores: E(): 3.9e-18,
FT                   35.19% id in 304 aa"
FT                   /db_xref="GOA:Q7VZ43"
FT                   /db_xref="InterPro:IPR001851"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ43"
FT                   /protein_id="CAE41393.1"
FT                   /translation="MDALFFLEVTLAGLGGGALYALAALAFVIVYKATRVVNIAIGEFL
FT                   MMGAYAFYAFAADMQWPVWAAIGGAILASALLGALVERVAIRPMLGESPISVFMITVGL
FT                   ASILVGVVELVWTADQRRLPEFMPRDPVMIGEAFVAPKVFYGFWVAVGLAALVLLVFRY
FT                   WRGGVALRATAADQGAAYAMGINVPRVFSLAWAAAGAMAAVARLIVGAIGGISSSMGAF
FT                   GLSVLVVVIVGGLDSVAGALLGGLFIGLVEAWAGAYLGGEYKLLVTFVVLVATLMARPY
FT                   GLFGTREIERL"
FT   misc_feature    101321..101389
FT                   /note="Signal peptide predicted for BP1095 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.805) with cleavage site
FT                   probability 0.421 between residues 23 and 24"
FT   misc_feature    101336..102184
FT                   /note="HMMPfam hit to PF02653, Branched-chain amino acid
FT                   transport system / permease component"
FT   misc_feature    join(101348..101407,101426..101485,101495..101563,
FT                   101600..101668,101747..101815,101888..101956,
FT                   101999..102067,102086..102154)
FT                   /note="8 probable transmembrane helices predicted for
FT                   BP1095 by TMHMM2.0 at aa 10-29, 36-55, 59-81, 94-116,
FT                   143-165, 190-212, 227-249 and 256-278"
FT   CDS             102203..103099
FT                   /pseudo
FT                   /transl_table=11
FT                   /gene="livM"
FT                   /locus_tag="BP1096"
FT                   /product="high-affinity branched-chain amino acid transport
FT                   system permease protein (Pseudogene)"
FT                   /note="Pseudogene. There is a large deletion, following
FT                   codon 299, within this CDS relative to parapertussis and
FT                   bronchiseptica. This deletion removed the stop codon for
FT                   this CDS. Similar to Escherichia coli high-affinity
FT                   branched-chain amino acid transport system permease protein
FT                   LivM or B3456 SW:LIVM_ECOLI (P22729) (425 aa) fasta scores:
FT                   E(): 1.2e-10, 33.22% id in 295 aa, and to Rhizobium loti
FT                   ABC transporter, permease protein Mlr5222 TR:Q98CB4
FT                   (EMBL:AP003006) (346 aa) fasta scores: E(): 3.8e-27, 39.5%
FT                   id in 281 aa"
FT   misc_feature    102215..103099
FT                   /note="This hit extended beyond the end of the feature by 1
FT                   aa and was clipped."
FT                   /note="HMMPfam hit to PF02653, Branched-chain amino acid
FT                   transport system / permease component"
FT   misc_feature    102635..102652
FT                   /note="ScanRegExp hit to PS00343, Gram-positive cocci
FT                   surface proteins 'anchoring' hexapeptide."
FT   variation       103097..103099
FT                   /note="Large deletion in pertussis, relative to
FT                   parapertussis and bronchiseptica, following this codon.
FT                   This deletion may have also removed the N-terminal region
FT                   of the downstream CDS, BP1097"
FT   CDS             103104..104219
FT                   /transl_table=11
FT                   /gene="livK"
FT                   /locus_tag="BP1097"
FT                   /product="putative amino acids binding protein"
FT                   /note="Due to a possible large deletion event immediately
FT                   upstream, this CDS may be lacking part of its amino
FT                   terminal region. Similar to Escherichia coli
FT                   leucine-specific binding protein precursor LivK or B3458
FT                   SW:LIVK_ECOLI (P04816) (369 aa) fasta scores: E(): 1.2e-09,
FT                   23.1% id in 329 aa, and to Pseudomonas aeruginosa leucine-,
FT                   isoleucine-, valine-, threonine-, and alanine-binding
FT                   protein precursor BraC or pa1074 SW:BRAC_PSEAE (P21175)
FT                   (373 aa) fasta scores: E(): 3.5e-10, 22.74% id in 321 aa"
FT                   /db_xref="InterPro:IPR001828"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ42"
FT                   /protein_id="CAE41395.1"
FT                   /translation="MLAAPVAQAAEDLVIGGSIPLSGVFAFAGQGIHAGIGDYVKMVNE
FT                   EGGVAGRKLVYVPEDTAYKVDASVAAFKKIASQNKVNFYYGDSTGFSKTINAELNRAGT
FT                   MIMTGASFATELNDPAKYPNQFMLGPDYTEMFGILLRYIAKEQPGAKVAFVYSDTEFGR
FT                   DPITSSRAVAEKLGLKVVTEIMTPPGSVDVSTEVIKLRRAAPDYTIFHGYVLAPIPEFV
FT                   GQGKRMGLKTRYMGTFWTMDNSTVMQMGEDADGFMGVMPYRYYYDDAADAPMLKKIRAM
FT                   RPDYQSTGYMQGFLAAMLFAETAKRTLAADKPLTAANMKATLDAIKDFDTGGLIGVPIS
FT                   IKGNSIPVGRIYRADAKQKKMLPVSDWIVLD"
FT   CDS             104227..105042
FT                   /transl_table=11
FT                   /gene="livF"
FT                   /locus_tag="BP1098"
FT                   /product="high-affinity branched-chain amino acid transport
FT                   ATP-binding protein"
FT                   /note="Similar to Escherichia coli high-affinity
FT                   branched-chain amino acid transport ATP-binding protein
FT                   LivF or B3454 SW:LIVF_ECOLI (P22731) (237 aa) fasta scores:
FT                   E(): 1.2e-26, 43.75% id in 240 aa, and to Rhizobium loti
FT                   ABC transporter, ATP-binding protein Mlr5224 TR:Q98CB2
FT                   (EMBL:AP003006) (268 aa) fasta scores: E(): 2.1e-38, 51.41%
FT                   id in 247 aa"
FT                   /db_xref="GOA:Q7VZ41"
FT                   /db_xref="HSSP:1JI0"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ41"
FT                   /protein_id="CAE41396.1"
FT                   /translation="MTTSAAPVLAINNIEVVYNKAVQVLRGLSLEVPRGGIVALLGSNG
FT                   AGKSTTLKAVSRLLELEDGALVSGAIRFQGSDTAGRAPQALVRAGLAHVMEGRRVFEDL
FT                   TVEENLVAAAYALSGRAGARPDFDLVYGYFPRLYERRRGLAGYLSGGEQQMLAIGRALI
FT                   AQPSLMLLDEPSLGLSPMLVESIFSIIARINAEQGVSMLLVEQNASVALAVAHYGYIME
FT                   TGKVVIGGSAERLAGDPDVREFYLGVGGGGEARGFRQLKHYKRRKRWLS"
FT   misc_feature    104329..104898
FT                   /note="HMMPfam hit to PF00005, ABC transporter"
FT   misc_feature    104350..104373
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   misc_feature    104668..104712
FT                   /note="ScanRegExp hit to PS00211, ABC transporters family
FT                   signature."
FT   CDS             105039..106904
FT                   /transl_table=11
FT                   /locus_tag="BP1099"
FT                   /product="putative long-chain fatty-acid--CoA ligase"
FT                   /note="Similar to Vibrio cholerae
FT                   long-chain-fatty-acid--CoA ligase, putative Vc2484
FT                   TR:Q9KP89 (EMBL:AE004318) (601 aa) fasta scores: E():
FT                   2e-51, 31.82% id in 597 aa, and to Aeropyrum pernix 651aa
FT                   long hypothetical long-chain-fatty-acid--CoA ligase Ape1307
FT                   TR:Q9YCF0 (EMBL:AP000061) (651 aa) fasta scores: E():
FT                   5.9e-68, 34.65% id in 629 aa"
FT                   /db_xref="GOA:Q7VZ40"
FT                   /db_xref="InterPro:IPR000873"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ40"
FT                   /protein_id="CAE41397.1"
FT                   /translation="MTRASMHPRAEGLPRGDWPALTLPQMLREQARRQPARIALRQKDY
FT                   GIWQPIDWATYWRRACQVALGLRAAGLEPGGKVAIIAENRLEWLLAQMGAGVLGAVPVG
FT                   VYCTSPAAEVGYVLEHAEVDMVVCEDQEQTDKVLEVAARLPGLRRIVVMETKGLRNHAE
FT                   AERARMISFAELEARGAQCGAAEQARLEQALDAQTLDDVGLMIYTSGSTGKPKGVMISY
FT                   RNMRGVAPGIADRLDMDAGSVHLSYLPLCHVAEQMLSTFVPVYLGSQVNFGESIRTVQE
FT                   DLREVAPTVFLGVPRIWEKLHAAISIKMQESGRLRRWLYARALRGCAPFLELSRARYGW
FT                   RERLVYGWHYALILRALHNFVGLRRVKVAMTGAAPIPPEVLRYFRTLGIPLIEVYGLTE
FT                   STGMIFGQHPDRVRVGTVGEPTLGVQARVGEQGELLVRGEMVFHGYYRNPQASADTVCD
FT                   GWLHTGDVVALEDGQYRIVDRLKDIMITAGGKNLTPSEIENAVKGSPYVKECIAIGDQR
FT                   RYVAALIQIEYDTVAKWAELNGIAYTHFRSLAEHPRVRQLVHGEVERANAALAQVARVK
FT                   RFHLLVKELDHDDGEVTATMKVRRASIAQAYRSEIEALYRQEEAA"
FT   misc_feature    105201..106574
FT                   /note="HMMPfam hit to PF00501, AMP-binding enzyme"
FT   misc_feature    105651..105686
FT                   /note="ScanRegExp hit to PS00455, Putative AMP-binding
FT                   domain signature. Confirmed by InterPro eMOTIF pattern
FT                   match."
FT   CDS             106983..107615
FT                   /transl_table=11
FT                   /locus_tag="BP1100"
FT                   /product="probable TetR-family transcriptional regulator"
FT                   /note="Similar to Pseudomonas aeruginosa probable
FT                   transcriptional regulator Pa2885 TR:Q9HZW2 (EMBL:AE004714)
FT                   (198 aa) fasta scores: E(): 3.9e-24, 45.45% id in 176 aa,
FT                   and to Pseudomonas fluorescens putative transcriptional
FT                   regulator Pfi2 TR:Q9RFR4 (EMBL:AF173683) (207 aa) fasta
FT                   scores: E(): 6.4e-23, 43.88% id in 180 aa"
FT                   /db_xref="GOA:Q7VZ39"
FT                   /db_xref="InterPro:IPR012287"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ39"
FT                   /protein_id="CAE41398.1"
FT                   /translation="MHASSRGTEEAAGSPRRADVIATAGELFRLHGYERTTVRELARAV
FT                   GLQSGSLFHHFRSKEEILVAVMSEGIEEVLEQGALALAHYQDPGARLAALFRVHMWSML
FT                   KGAGGDAMNALVYEWRSLSPAARGGVKALSDRYEDMWQDAVDDALRAGLVDGDARVIKR
FT                   YLLGGLNLTVQWYRPQGRLAPGDFIEAMLRAALPGLPPGTGAWPLRD"
FT   misc_feature    107040..107180
FT                   /note="HMMPfam hit to PF00440, Bacterial regulatory
FT                   proteins, tetR family"
FT   misc_feature    107076..107168
FT                   /note="ScanRegExp hit to PS01081, Bacterial regulatory
FT                   proteins, tetR family signature."
FT   misc_feature    107088..107153
FT                   /note="Predicted helix-turn-helix motif with score 1174
FT                   (+3.19 SD) at aa 36-57, sequence TTVRELARAVGLQSGSLFHHFR"
FT   CDS             complement(107612..107914)
FT                   /transl_table=11
FT                   /locus_tag="BP1101"
FT                   /product="putative membrane protein"
FT                   /note="no significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ38"
FT                   /protein_id="CAE41399.1"
FT                   /translation="MAALAYLLLSRRARPAAAPRPLRALPAGRRRMPLYLGVAAVLALA
FT                   GALLSAFLLVTAMAGGSGGGYRGQADFLQQVAIVLLAIGVVCAIAALVSFFRQRG"
FT   misc_feature    complement(join(107627..107692,107738..107803))
FT                   /note="2 probable transmembrane helices predicted for
FT                   BP1101 by TMHMM2.0 at aa 37-59 and 74-96"
FT   misc_feature    complement(107738..107914)
FT                   /note="Signal peptide predicted for BP1101 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.797) with cleavage site
FT                   probability 0.725 between residues 59 and 60"
FT   CDS             complement(107957..109477)
FT                   /transl_table=11
FT                   /gene="lysS"
FT                   /gene_synonym="herC"
FT                   /gene_synonym="asuD"
FT                   /locus_tag="BP1102"
FT                   /product="lysyl-tRNA synthetase"
FT                   /EC_number="6.1.1.6"
FT                   /note="Similar to Escherichia coli lysyl-tRNA synthetase
FT                   LysS or HerC or AsuD or B2890 SW:SYK1_ECOLI (P13030) (504
FT                   aa) fasta scores: E(): 3.6e-115, 59.43% id in 498 aa, and
FT                   to Neisseria meningitidis lysyl-tRNA synthetase LysS or
FT                   Nma1638 TR:Q9JTT7 (EMBL:AL162756) (503 aa) fasta scores:
FT                   E(): 1e-126, 62.32% id in 507 aa"
FT                   /db_xref="GOA:Q7VZ37"
FT                   /db_xref="InterPro:IPR018150"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VZ37"
FT                   /protein_id="CAE41400.1"
FT                   /translation="MTDQSPAPTAQDENRLIAERRAKLARLRETGVAFPNNFVPDAHAA
FT                   DLHARYDGLDQEALTAAAVTVKVAGRMMLKRVMGKASFATLQDGSGRIQIYLERGTLGE
FT                   EAYAAFKQWDIGDIIAIEGPVFKTNKGELSVHANSARLLSKSLRPLPDKFHGVADQELR
FT                   YRQRYVDLIMTDATRRTFEARSKAVGGIRQAMLNAGFLEVETPMLHPIPGGAAAKPFVT
FT                   HHNALDMQMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAY
FT                   ADYRWLMDFTEDLIRQAAIAATGSAVLSYQDRELDLSQPFDRLTICEAILKYAEGYTQA
FT                   QLDDPAFVRAELRKLGANVEGPPLARAGLGALQLALFEETAEAKLWRPTYIIDYPVEVS
FT                   PLARASDTRDGITERFELFITGREIANGFSELNDPEDQAERFRAQVEAKDAGDEEAMYF
FT                   DADYIRALEYGMPPTGGCGIGIDRLVMLLTDSPSIRDVILFPHLRRED"
FT   misc_feature    complement(107966..109003)
FT                   /note="HMMPfam hit to PF00152, tRNA synthetases class II
FT                   (D, K and N)"
FT   misc_feature    complement(108020..108049)
FT                   /note="ScanRegExp hit to PS00339, Aminoacyl-transfer RNA
FT                   synthetases class-II signature 2."
FT   misc_feature    complement(108650..108703)
FT                   /note="ScanRegExp hit to PS00179, Aminoacyl-transfer RNA
FT                   synthetases class-II signature 1. Confirmed by InterPro
FT                   eMOTIF pattern match."
FT   misc_feature    complement(109049..109282)
FT                   /note="HMMPfam hit to PF01336, OB-fold nucleic acid binding
FT                   domain"
FT   CDS             complement(109484..110239)
FT                   /transl_table=11
FT                   /locus_tag="BP1103"
FT                   /product="probable short chain dehydrogenase"
FT                   /note="Similar to Homo sapiens sepiapterin reductase Spr
FT                   SW:SPRE_HUMAN (P35270) (261 aa) fasta scores: E(): 2.1e-15,
FT                   38.4% id in 250 aa, and to Bacillus subtilis YueD protein
FT                   TR:O32099 (EMBL:Z99120) (243 aa) fasta scores: E():
FT                   1.1e-20, 36.25% id in 251 aa"
FT                   /db_xref="GOA:Q7VZ36"
FT                   /db_xref="HSSP:1E92"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ36"
FT                   /protein_id="CAE41401.1"
FT                   /translation="MTDTVAILTGASRGLGAALARGLLAPGTRLITLARRADPDLEAAA
FT                   RTRGASLEQVQVDLSDPAAAGAAAKRLCAALPRDARRYLLINNAGTVSPVAQAAGLTDG
FT                   AAIAGALNLNVTAVVLLTARFVAALQGLPADRRVLNISSGAGRNPNAGWGVYCAAKAAL
FT                   DMYSRVLKQEQGQDGVRVVALAPGIVDTDMQGAIRASDPADFPALERFREFHATGKLSA
FT                   PADVAARILAYLDRDDFGTTEIDDIRNYQ"
FT   misc_feature    complement(109664..110230)
FT                   /note="HMMPfam hit to PF00106, short chain dehydrogenase"
FT   CDS             complement(join(110269..111291,111293..111373))
FT                   /transl_table=11
FT                   /gene="prfB"
FT                   /gene_synonym="supK"
FT                   /locus_tag="BP1104"
FT                   /product="peptide chain release factor 2"
FT                   /note="Similar to Escherichia coli peptide chain release
FT                   factor 2 PrfB or SupK or B2891 SW:RF2_ECOLI (P07012) (365
FT                   aa) fasta scores: E(): 2.3e-90, 64.26% id in 361 aa, and to
FT                   Neisseria meningitidis peptide chain release factor 2 PrfB
FT                   or Nma0224 TR:Q9JWV4 (EMBL:AL162752) (367 aa) fasta scores:
FT                   E(): 1.7e-93, 65.12% id in 367 aa. Contains a naturally
FT                   occurring frameshift following an in-frame UGA stop codon
FT                   after Leu 27. Also similar to BP0678, 40.571% identity in
FT                   350 aa overlap."
FT                   /db_xref="GOA:Q7VZ35"
FT                   /db_xref="HSSP:1GQE"
FT                   /db_xref="InterPro:IPR004374"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VZ35"
FT                   /protein_id="CAE41402.1"
FT                   /translation="MEAERQNQLVARLEDYAEREQALRRYLDYDAKSERLQVVNAELED
FT                   PAIWNDPKHAQDLGREKKSLEDVVETLTELGSGLADSCELVELALADSDDATLEAIEHD
FT                   ADRFQEKLETLEFRRMFANPADPLNCFVDIQAGAGGTEAQDWASMLLRQYLKYAERKGF
FT                   KAEILEESEGDVAGLKSATIKIEGEYAFGYLRTETGVHRLVRKSPFDSSGGRHTSFASV
FT                   FVYPEVDESFEVEVNPADLRIDTYRASGAGGQHINKTDSAVRITHAPSGIVVQCQNDRS
FT                   QHRNRAEAMQMLKSKLYELEMRNRMTEQQKLEDSKTDVGWGHQIRSYVLDQSRIKDLRT
FT                   NVEISNTQKVLDGDLDPFIQASLKQGV"
FT   misc_feature    complement(110356..110694)
FT                   /note="HMMPfam hit to PF00472, Peptidyl-tRNA hydrolase
FT                   domain"
FT   CDS             complement(111476..113176)
FT                   /transl_table=11
FT                   /gene="recJ"
FT                   /locus_tag="BP1105"
FT                   /product="single-stranded-DNA-specific exonuclease"
FT                   /EC_number="3.1.-.-"
FT                   /note="Similar to Escherichia coli
FT                   single-stranded-DNA-specific exonuclease RecJ or B2892
FT                   SW:RECJ_ECOLI (P21893) (577 aa) fasta scores: E(): 2.1e-86,
FT                   46.6% id in 575 aa, and to Neisseria meningitidis putative
FT                   single-stranded-DNA-specific exonuclease RecJ or Nma1052
FT                   TR:Q9JV09 (EMBL:AL162755) (566 aa) fasta scores: E():
FT                   3.2e-110, 54.32% id in 567 aa"
FT                   /db_xref="GOA:Q7VZ34"
FT                   /db_xref="HSSP:1IR6"
FT                   /db_xref="InterPro:IPR003156"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ34"
FT                   /protein_id="CAE41403.1"
FT                   /translation="MVSPRLIIRTADLQACQHLEAAGIHPLLSRLWAARGVIHPEQTRM
FT                   AWPALLPPDRLTHSAHAAAVLADAIEQGKRLLIVADYDCDGATACAVGLRALSAMGADV
FT                   DFLVPNRFETGYGLSPAVVELACRHRRGKPDIIITVDNGIASVDGVAAANAAGIGVVIT
FT                   DHHLPGDTLPEALAIVNPNQPGCGFGSKHLAGVGVIFYMMLALRAELRRRGVYAPDGGP
FT                   RLDALSDLVALGTVADVVKLDANNRLLVTQGLQRMRAGRMQPGVRALFAVAGREPRTAS
FT                   GFDLGFALGPRINAAGRLADMSLGIACLTTDDEAQTLEMARELDNINRERRTIEAEMRD
FT                   QALAAMEAPDAAAGATVCVFDPGWHQGVVGLVASRLKEKFWRPTLAFAPAGEDELRGSG
FT                   RSIPDVHLRDALDLVSKRHPGLIRKFGGHAMAAGLTLGSGDFAAFAPAFDAAVRELTGR
FT                   DRFEPLLETDGSLESGYANAEVAGLLQQQVWGAGFAAPLFLDEFTVRSQRLVGGKHLKL
FT                   ALERGHQRFDAIWFGHDQSLPERIQAAYRLEQNIWNGMVSVQLVIEHAA"
FT   misc_feature    complement(111827..112036)
FT                   /note="HMMPfam hit to PF02272, DHHA1 domain"
FT   misc_feature    complement(112454..112972)
FT                   /note="HMMPfam hit to PF01368, DHH family"
FT   CDS             complement(113158..114135)
FT                   /transl_table=11
FT                   /locus_tag="BP1106"
FT                   /product="putative exported protein"
FT                   /note="Similar to Xanthomonas campestris regulatory protein
FT                   RpfE TR:Q9L4D4 (EMBL:AJ245997) (306 aa) fasta scores: E():
FT                   6e-10, 30.59% id in 317 aa, and to Xylella fastidiosa
FT                   hypothetical protein Xf1109 TR:Q9PEB9 (EMBL:AE003946) (293
FT                   aa) fasta scores: E(): 1.2e-06, 29.06% id in 234 aa"
FT                   /db_xref="InterPro:IPR019304"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ33"
FT                   /protein_id="CAE41404.1"
FT                   /translation="MALTGTRTTIAAMLIVIPGALPAAAVAPELARLLPQHAPTLHGWL
FT                   QAASARVQAFDAARQGCTPFEGWQLEQAGYQPQPGLPLGAGLGPLRAAGGTPGQPVWLA
FT                   DLAHLMLGADQAALLDPALLDLRADESAQLFEAAAPLFADSGFGATPIDAARWRLTLPA
FT                   GMAPQTASPAAVAGQRLRAWWTQDVAMRPWRRLLNEIQMVWYEHPVNEARAARGAAPIN
FT                   ALWLYGGATPWPAGAPAPARVCDELAATQRAGDWAAWLDALAMLDAAQLAPLAGPHGRP
FT                   VQPLQLLLLGDDRRAALTLKPRAGLARWLPAPKHNWNAWWSRPV"
FT   misc_feature    complement(114061..114135)
FT                   /note="Signal peptide predicted for BP1106 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.997) with cleavage site
FT                   probability 0.712 between residues 25 and 26"
FT   CDS             114193..115425
FT                   /transl_table=11
FT                   /gene="lolC"
FT                   /gene_synonym="lolE"
FT                   /locus_tag="BP1107"
FT                   /product="lipoprotein releasing system transmembrane
FT                   protein"
FT                   /note="Similar to Escherichia coli lipoprotein releasing
FT                   system transmembrane protein LolE or B1118 SW:LOLE_ECOLI
FT                   (P75958) (413 aa) fasta scores: E(): 1.4e-42, 36.27% id in
FT                   408 aa, and to Escherichia coli lipoprotein releasing
FT                   system transmembrane protein LolC or B1116 or Z1757 or
FT                   Ecs1494 SW:LOLC_ECOLI (P75956) (399 aa) fasta scores: E():
FT                   2.7e-22, 34.86% id in 413 aa"
FT                   /db_xref="GOA:Q7VZ32"
FT                   /db_xref="InterPro:IPR011925"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ32"
FT                   /protein_id="CAE41405.1"
FT                   /translation="MARIRQRRGCRDRFISFIAATSMAGIALGVAALIVVLSVMNGFQK
FT                   EVRDRMLSVLPHIELYIPGAAPERVLQQWRQFAQAARANPEVKGEAPFVAAQGMLVRGQ
FT                   ALRGVQVRGIDPATEGNVSDIPRQMVSGKLSDLVAGGFGAVLGSDLADGLGVKTGDTVL
FT                   MLAPQGSISPAGFAPRMRQFTVVGIFSSGHYEYDSTLVFIDDEDAAKVFRESGTAGVRL
FT                   RVADMQRAPEVAAELTKVLPPYVMAADWSRNNRTWFAAVQTEKRMMFLILALIVAVAAF
FT                   NLLSSLVMAVKDKQSDIAILRTLGAGPGEVARIFLVQGALIGVVGTLLGVAGGIAIAYN
FT                   VDVIVPFIERLLGVQFLPREVYFISALPSDPQADDIITIGLTSLVLSLLATLYPSWRAS
FT                   RLQPAQVLRHD"
FT   misc_feature    114193..114279
FT                   /note="Signal peptide predicted for BP1107 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.988) with cleavage site
FT                   probability 0.512 between residues 29 and 30"
FT   misc_feature    join(114229..114297,114997..115065,115135..115203,
FT                   115318..115386)
FT                   /note="4 probable transmembrane helices predicted for
FT                   BP1107 by TMHMM2.0 at aa 13-35, 269-291, 315-337 and
FT                   376-398"
FT   misc_feature    114667..115413
FT                   /note="HMMPfam hit to PF02687, Predicted permease"
FT   CDS             115418..116113
FT                   /transl_table=11
FT                   /gene="lolD"
FT                   /locus_tag="BP1108"
FT                   /product="lipoprotein releasing system ATP-binding protein"
FT                   /note="Similar to Escherichia coli lipoprotein releasing
FT                   system ATP-binding protein LolD or B1117 SW:LOLD_ECOLI
FT                   (P75957) (233 aa) fasta scores: E(): 1e-39, 57.79% id in
FT                   218 aa, and to Pseudomonas aeruginosa probable ATP-binding
FT                   component of ABC transporter Pa2987 TR:Q9HZL7
FT                   (EMBL:AE004724) (227 aa) fasta scores: E(): 1.1e-38, 57.14%
FT                   id in 224 aa"
FT                   /db_xref="GOA:Q7VZ31"
FT                   /db_xref="InterPro:IPR011924"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VZ31"
FT                   /protein_id="CAE41406.1"
FT                   /translation="MTEPNDTGPALQAEHLGKVYDEGPARIEVLSDVSLSVARGEMVAI
FT                   VGASGSGKSTLLHILGLLDVPSSGTVSVDGVPAAGLSEKRKSALRNRSLGFVYQFHHLL
FT                   PEFSALDNVAMPLIVRRENRDRARAQAREVLELVGLAAREEHFPGQLSGGERQRVALAR
FT                   ALVTRPACVLADEPTGNLDRHTAHNMFELLTRVNRESGTAFVIVTHDPELAARADRQLH
FT                   MENGRLQPD"
FT   misc_feature    115535..116095
FT                   /note="HMMPfam hit to PF00005, ABC transporter"
FT   misc_feature    115556..115579
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   misc_feature    115868..115912
FT                   /note="ScanRegExp hit to PS00211, ABC transporters family
FT                   signature. Confirmed by InterPro eMOTIF pattern match."
FT   CDS             116147..116974
FT                   /transl_table=11
FT                   /locus_tag="BP1109"
FT                   /product="putative deoxyribonuclease"
FT                   /EC_number="3.1.21.-"
FT                   /note="Similar to Escherichia coli putative
FT                   deoxyribonuclease YjjV or B4378 SW:YJJV_ECOLI (P39408) (259
FT                   aa) fasta scores: E(): 7.3e-29, 42.06% id in 252 aa, and to
FT                   Pseudomonas aeruginosa hypothetical protein Pa3564
FT                   TR:Q9HY53 (EMBL:AE004777) (225 aa) fasta scores: E():
FT                   1.2e-25, 40.62% id in 224 aa"
FT                   /db_xref="GOA:Q7VZ30"
FT                   /db_xref="HSSP:1J6O"
FT                   /db_xref="InterPro:IPR018228"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ30"
FT                   /protein_id="CAE41407.1"
FT                   /translation="MLIDTHCHLDAAEFDADRMAVARAAREAGVQAIVIPAVERANFAT
FT                   VRQLAHAVDSGAYALGIHPLYVARARDEDLDSLRRAIESALPDPRFVAIGEIGLDFFVA
FT                   EIASGAPRERQERFYAAQLDLAAEYGLPVLLHVRRSQDILLKHLRRRPGVPGGIAHAFN
FT                   GSAQQAGAFVEQGFALGLGGAMTYPRALQIRRHAADIGLDHLVLETDAPDIPPAWLYEP
FT                   ERRNTPGQLPRIAAELAALRGQAVADVARATTTTALRVLPRLGALLQDRAATP"
FT   misc_feature    116150..116176
FT                   /note="ScanRegExp hit to PS01137, TatD deoxyribonuclease
FT                   family signature 1. Confirmed by InterPro eMOTIF pattern
FT                   match."
FT   misc_feature    116165..116932
FT                   /note="HMMPfam hit to PF01026, TatD related DNase"
FT   CDS             117256..120486
FT                   /transl_table=11
FT                   /gene="sphB3"
FT                   /locus_tag="BP1110"
FT                   /product="serine protease"
FT                   /note="Similar to Pseudomonas tolaasii serine protease EprS
FT                   TR:O87811 (EMBL:AJ007828) (985 aa) fasta scores: E():
FT                   1.1e-18, 25% id in 1060 aa, and to Serratia marcescens
FT                   Ssp-h1 TR:Q54483 (EMBL:D78380) (1036 aa) fasta scores: E():
FT                   9.3e-26, 27.08% id in 1067 aa"
FT                   /db_xref="GOA:Q7VZ29"
FT                   /db_xref="InterPro:IPR005546"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ29"
FT                   /protein_id="CAE41408.1"
FT                   /translation="MAQASARGMGLRITSLAAALLGVYGAAGAAENRLECIGACPPGQP
FT                   VAGAHYSGTNLSANREWVVYGEGSNAVFTLQGGSVTASGGLMGAVNAADGARVYLNQVS
FT                   VRTDAGNGWEAPGVRAEYGALVNVRGGSIATVGGGSYGVQSLDSGTMIELNGTDIRTTD
FT                   AYSDGLRAEFGGSIRAVGLTINTTGEHAVGAMGADDGTIALRDSRITTSGVDAYGLGTE
FT                   SQVLSPGGVLQVSNTAIQTSGKNAHGVYLQGGSSLNMSGGSIRTTGSGAAGLRVSNGSS
FT                   VALNGVEVVASGPSLLSTLSATRQQSIVVGAGSNLTRNDGRLLLVRRVAGGELGQVTLT
FT                   LKSGSYAAGNIENLAADGSRESSALTIVDVQSGAQWAGLVIDDTTAIVNGSQSGQHSGF
FT                   STAGDMVLEGGSAPVTFTGVSNIGGSSSLGAGSQTTFGGATTIGQSLAVLPGGSVAFNG
FT                   PLTIGESVTEGQGTALSFNAPAIIGANVQGAGGAAFTFSGPAQVGGSVQGLDGASFRFS
FT                   TSAPTAIAGGLSLAGGSSLGGGSPTTPIVVIGGADAVSGAILGGNLDIGGALRMTGASL
FT                   APGNSIGTVTVGSVGALSGSTYLAEVNAKGQSDLLVVRSGNVDLAGVSLVVGQENGTGG
FT                   YVLNHDYTIIKTEAGKIVGEFAAASLDESLASTLVKLDPVKYGAQATQVSLSPDADKLA
FT                   AARAGLIRNQSAVLDGALSVAGRNASADAVMLMSDTGQRADALDQLSGEVHGSAVSALY
FT                   SNTQLLNRTVARRMSANLGAGLLAGAPTAQAAGPAAASAMPGTAAYPLWADVVDNWSSF
FT                   DAKDNAAKAKSNTAGLFIGGDAAVGAGWRVGGALGFTDGRIKADAVDSRSDVTSYTAAL
FT                   YGGNSWAAGKGKLNFLAGVGYTHHDIDSRRSVDVGGAQTLKADYKANTTQLFAELGYQV
FT                   PVGASSSVEPYAGLAWFNNHSDSFDEDGGPAALHGSGQTDQITTFTLGLRGNTALQLGA
FT                   TETRLSAGLGWRHANGDVDATRKLAFIQGGGTAFTVAGSPVAREAAVLDLAAEVDVGRN
FT                   AALGLAYGGQFGNGNKENTGSLYLKVRF"
FT   misc_feature    117256..117342
FT                   /note="Signal peptide predicted for BP1110 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.977) with cleavage site
FT                   probability 0.936 between residues 29 and 30"
FT   misc_feature    117817..117849
FT                   /note="ScanRegExp hit to PS00639, Eukaryotic thiol
FT                   (cysteine) proteases histidine active site."
FT   repeat_region   120477..120759
FT                   /note="to be defined- Nick"
FT   CDS             120755..120931
FT                   /transl_table=11
FT                   /locus_tag="BP1111"
FT                   /product="hypothetical protein"
FT                   /note="no significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ28"
FT                   /protein_id="CAE41409.1"
FT                   /translation="MGAFCLFEECVAGIASRHPQWADVALPGDIQAEVLPRAPLPVHGA
FT                   PAARYPGLFDVPD"
FT   CDS             121222..125148
FT                   /transl_table=11
FT                   /gene="bipA"
FT                   /locus_tag="BP1112"
FT                   /product="putative outer membrane ligand binding protein"
FT                   /note="Similar to Bordetella bronchiseptica putative outer
FT                   membrane ligand binding protein BipA TR:Q9APE8
FT                   (EMBL:AF304006) (1578 aa) fasta scores: E(): 0, 79.75% id
FT                   in 1576 aa, and to Escherichia coli O157:H7 EDL933 putative
FT                   adhesin EaeH TR:AAG54632 (EMBL:AE005207) (1417 aa) fasta
FT                   scores: E(): 1.6e-17, 23.88% id in 1390 aa. Also similar to
FT                   BP3204, 41.856% identity (43.284% ungapped) in 970 aa
FT                   overlap."
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ27"
FT                   /protein_id="CAE41410.1"
FT                   /translation="MNKNIYRVVWSLVRGAWVVAGEWARAGRKSSSPRRQNRQRARRGV
FT                   AAMVGGSILAQALLPLSALAQGAPTLRPARVAQEEAGQDAAWTRKLAAQAESLARRQAE
FT                   RQPGARVDGDYLKREAQAQVNDVLRDGVNLARESGLPFLRNLQGGLSHDFESGRTSLQL
FT                   NTIDEVYRAGRNTGLLQLGAHNQNDRPTANAGAVYRREVNDALMVGANGFLDYEFGKQH
FT                   LRGSVGLEVIAPEFSLYGNVYAPLSDWKGAKRNNRREEKPASGMDVGVGYRPAFAPGLS
FT                   LSATHFRWNGAEVDYFDNGRTQAGAKGFKVGVEYRPVSLVSVGLEQTKVIGGGRETRMQ
FT                   LGLNINLSEPLSKQLRRDASGTPAFSPDARRHALVERENRIVLNTRRKEIILPLVVSKV
FT                   STLQADGRVTVIGATQPFATVTVRMPDGMTGTATADASGRFAYTSAGDQPSGVLALRAR
FT                   NAEGDSSREVTYRYVDEVVLGDLQVAVMALVPLPADRALEVRGKTEPKVDVKVSFSNGE
FT                   SVLAKADAKGLFTVRSTRKVTQGKVLVQATHPQTRKEARAVADYLPPATLAPTIDAVTA
FT                   QADTGRVTVTGQAEPGAQVDVHFPDGTAKTVDAGADGAYAATSDGDMVSGDIHAQATDK
FT                   AGNQSPEATRHYGDTTDITPPAAPTIANVATDATSGRVTAAGMAEPGANVTVNFPDGTR
FT                   KTVVAGGDGAYTATSDRDMVSGDIRVQATDKAGNQSPEATRAYADAVDRTAPEVPTVTH
FT                   VATDAKSGRITVTGMAEPGANVTVNFPDGTRKTAVAGGDGAYTATSDGDMVSGDIRVQA
FT                   TDKAGNRSPEATRAYADTVDTTPPAVPTITDVTTDATNGRITVTGVAEPGANVTVDFPD
FT                   GTRKTVVAGGDGAYTATSDRDMASGDVRVQAIDKGGNRSPEATRAYADTVDKTAPAAPT
FT                   ITNVTTDAASGRITVTGMAEPGANVAVNFPDGTRKTVVADGAGAYAADSDGDMVAGDIH
FT                   VQATDKAGNRSPEGTRAYVDTVDKTPSAAPTIVRVTTDRSSGVVTVAGTADPDNDVTVQ
FT                   FPDGGRKTVKAGKDGSYSVTSDNDIFSGIIQVSARNPAGNASPEVRQDYRDEFVPANAI
FT                   TNIETNSRNGIVTVSGKTSPDATVVVSFPGGDEARTRAKGDGTFSVSSPMDIPRGVVSL
FT                   STEVNGVQTVVATRTYEDKFTKGGLDFTAFLPYTPKFNGVSTSDTSAVLLSIPRYFYSG
FT                   GAPVAKIMPPEADGSEFAKRAAAAMRAQVTPGRDSSEYDVRVSWPAGTFTPADVGQRAD
FT                   LAVKVFDKGTGKYMLLLAPVNFPY"
FT   misc_feature    121351..121419
FT                   /note="1 probable transmembrane helix predicted for BP1112
FT                   by TMHMM2.0 at aa 44-66"
FT   misc_feature    122707..122730
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   misc_feature    124267..124317
FT                   /note="ScanRegExp hit to PS00237, G-protein coupled
FT                   receptors family 1 signature."
FT   CDS             join(125330..126949,127999..128844)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP1113"
FT                   /product="putative competence protein (Pseudogene)"
FT                   /note="Pseudogene. This CDS is disrupted by the insertion
FT                   of IS481 element. Similar to Pseudomonas stutzeri
FT                   competence protein ComA TR:Q9XAU3 (EMBL:AJ243354) (741 aa)
FT                   fasta scores: E(): 4.6e-20, 34.52% id in 814 aa, and to
FT                   Acinetobacter spBD413. competence factor ComA TR:Q9EYM1
FT                   (EMBL:AF320001) (792 aa) fasta scores: E(): 3.4e-25, 25.21%
FT                   id in 833 aa"
FT                   /db_xref="PSEUDO:CAE41411.1"
FT   misc_feature    join(125330..125374,125402..125470,125984..126052,
FT                   126095..126163,126221..126289,126404..126472,
FT                   126509..126577,126620..126688,126707..126775,
FT                   126803..126859)
FT                   /note="10 probable transmembrane helices predicted for
FT                   BP1113 by TMHMM2.0 at aa 20-42, 52-74, 246-268, 283-305,
FT                   325-347, 386-408, 421-443, 458-480, 487-509 and 519-537"
FT   repeat_region   126946..126977
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   126946..127997
FT   CDS             127048..127998
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP1114"
FT                   /product="transposase (Pseudogene)"
FT                   /note="Pseudogene. Transposase for IS481 element. The
FT                   transposase lacks a stop codon, hence it is fused to the
FT                   C-terminal portion of the disrupted CDS"
FT   misc_feature    127429..127962
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   repeat_region   complement(127967..127997)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   misc_feature    128014..128625
FT                   /note="HMMPfam hit to PF00753, Metallo-beta-lactamase
FT                   superfamily"
FT   CDS             128886..129812
FT                   /transl_table=11
FT                   /locus_tag="BP1115"
FT                   /product="probable hydrolase"
FT                   /note="Similar to Acidovorax spSA1 D-(-)-3-hydroxybutyrate
FT                   oligomer hydrolase TR:Q9F1T8 (EMBL:AB044565) (291 aa) fasta
FT                   scores: E(): 2.2e-10, 35.92% id in 309 aa, and to
FT                   Rickettsia prowazekii hypothetical 33.7 kDa protein Rp444
FT                   TR:Q9ZD98 (EMBL:AJ235271) (293 aa) fasta scores: E():
FT                   3.4e-10, 28.42% id in 292 aa"
FT                   /db_xref="GOA:Q7VZ26"
FT                   /db_xref="InterPro:IPR000073"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ26"
FT                   /protein_id="CAE41413.1"
FT                   /translation="MQEPRLDFVTCASPTGFHRMAYWEWGDPLNDRVLVCVHGLTRTGR
FT                   DFDHLARRLAGQWRVVCPDVAGRGKSDWLSNPALYAVPQYVSDMATLIARVWPATLAWV
FT                   GTSMGGLIGLGLAGAATMMRLARAMRPRPDGLPAQADDLRLHRLVLNDVGPRLNVEVLQ
FT                   RIAGNVAAQDSYSTFEAAVAAMRQISTTFGPHTDAQWDELARHIYVRQGGGWVRHFDPA
FT                   LAVPLGAQVAQAFEAGERILWQAYDSLDCPVLIVRGQDSDLLSAATAGEMLARNPRARL
FT                   HEVPGVGHAPTLMTPEQIEPIARFLQE"
FT   misc_feature    129057..129803
FT                   /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold"
FT   misc_feature    129186..129254
FT                   /note="1 probable transmembrane helix predicted for BP1115
FT                   by TMHMM2.0 at aa 115-137"
FT   CDS             129882..130727
FT                   /transl_table=11
FT                   /locus_tag="BP1116"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Salmonella typhimurium protein TrpH
FT                   SW:TRPH_SALTY (O54453) (289 aa) fasta scores: E(): 1.8e-32,
FT                   39.78% id in 274 aa, and to Neisseria meningitidis
FT                   hypothetical protein Nmb1824 TR:Q9JXZ5 (EMBL:AE002531) (278
FT                   aa) fasta scores: E(): 3e-45, 50.18% id in 271 aa"
FT                   /db_xref="GOA:Q7VZ25"
FT                   /db_xref="InterPro:IPR003141"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ25"
FT                   /protein_id="CAE41414.1"
FT                   /translation="MNIAAPNVDLHCHSTVSDGSMPPAAVARRAHANGVDVWALTDHDE
FT                   IGGVAEAAQAAAALGMRFVAGVEISVTWAGLTVHIVGLRVDPANEALVQGLRDTRAGRA
FT                   ARAVQIGERLAGLGMPGAYEGALPFAGNPELISRTHFARFLVEAGYCPDVQTVFNKYLG
FT                   DDCPGHVPMQWASLAEAVGWIRGAGGCAVIAHPGRYKYSPMQFDALYDEFLQLGGTGIE
FT                   VVTGSHTSEEARRYAEVARRHGFLASRGSDFHSPTESRVDLGRLPPLPPDLKPVWHDWF
FT                   "
FT   misc_feature    129903..130094
FT                   /note="HMMPfam hit to PF02231, PHP domain N-terminal
FT                   region"
FT   CDS             130795..131349
FT                   /transl_table=11
FT                   /gene="greB"
FT                   /locus_tag="BP1117"
FT                   /product="transcription elongation factor"
FT                   /note="Similar to Escherichia coli transcription elongation
FT                   factor GreB or B3406 SW:GREB_ECOLI (P30128) (158 aa) fasta
FT                   scores: E(): 3e-19, 46.35% id in 151 aa, and to Neisseria
FT                   meningitidis transcription elongation factor GreB or
FT                   Nmb0689 TR:Q9K0C5 (EMBL:AE002423) (163 aa) fasta scores:
FT                   E(): 4.4e-36, 63.87% id in 155 aa. Also similar to BP2267,
FT                   40.789% identity (41.060% ungapped) in 152 aa overlap."
FT                   /db_xref="GOA:Q7VZ24"
FT                   /db_xref="HSSP:1GRJ"
FT                   /db_xref="InterPro:IPR018151"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ24"
FT                   /protein_id="CAE41415.1"
FT                   /translation="MNKAFVKESDRDDEDDLPEAQALPAGTRNYMTPQGYARLRDELSH
FT                   LMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRMRFLTKRLDIAEVVDPAA
FT                   QPNRDQVFFGATVLYMDRAGEERTVTIVGVDEAEPLAGKISWISPVARALTKAHEGDTV
FT                   TLRTPGGVEELEILEVRYPDA"
FT   misc_feature    130870..131340
FT                   /note="HMMPfam hit to PF01272, Prokaryotic transcription
FT                   elongation factor, GreA/GreB"
FT   misc_feature    130918..131013
FT                   /note="ScanRegExp hit to PS00829, Prokaryotic transcription
FT                   elongation factors signature 1."
FT   CDS             complement(131396..132346)
FT                   /transl_table=11
FT                   /locus_tag="BP1118"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7VZ23"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ23"
FT                   /protein_id="CAE41416.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLAGLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS"
FT   repeat_region   131396..131427
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   complement(131396..132448)
FT   misc_feature    complement(131432..131965)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   misc_feature    complement(132023..132088)
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   repeat_region   complement(132417..132448)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(132445..133077)
FT                   /transl_table=11
FT                   /gene="fim2"
FT                   /locus_tag="BP1119"
FT                   /product="serotype 2 fimbrial subunit precursor"
FT                   /note="Previously sequenced as Bordetella pertussis
FT                   serotype 2 fimbrial subunit precursor Fim2 SW:FM2_BORPE
FT                   (P05788) (207 aa) fasta scores: E(): 1.6e-76, 100% id in
FT                   207 aa, and highly similar to Bordetella bronchiseptica
FT                   fimbrial subunit precursor Fim2 TR:Q44885 (EMBL:X74119)
FT                   (208 aa) fasta scores: E(): 1.9e-55, 71.63% id in 208 aa,
FT                   and to Bordetella bronchiseptica fimbrial subunit protein
FT                   FimN TR:Q9F8W4 (EMBL:AF231910) (209 aa) fasta scores: E():
FT                   2e-42, 62.43% id in 205 aa. Also similar to BP2674 (57.619%
FT                   identity in 210 aa overlap), and to BP1568 (56.338%
FT                   identity in 213 aa overlap)"
FT                   /db_xref="GOA:P05788"
FT                   /db_xref="InterPro:IPR014779"
FT                   /db_xref="UniProtKB/Swiss-Prot:P05788"
FT                   /protein_id="CAE41417.1"
FT                   /translation="MLPMQIPFQRALRLCLRAALAAIASAAHADDGTIVITGTITDTTC
FT                   VIEDPSGPNHTKVVQLPKISKNALKANGDQAGRTPFIIKLKDCPSSLGNGVKAYFEPGP
FT                   TTDYSTGDLRAYKMVYATNPQTQLSNITAATEAQGVQVRISNLNDSKITMGANEATQQA
FT                   AGFDPEVQTGGTSRTVTMRYLASYVKKNGDVEASAITTYVGFSVVYP"
FT   misc_feature    complement(132448..132984)
FT                   /note="HMMPfam hit to PF00419, Fimbrial protein"
FT   misc_feature    complement(132991..133077)
FT                   /note="Signal peptide predicted for BP1119 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 1.000 between residues 29 and 30"
FT   CDS             complement(133248..135530)
FT                   /transl_table=11
FT                   /gene="maeB"
FT                   /locus_tag="BP1120"
FT                   /product="NADP-dependent malic enzyme"
FT                   /EC_number="1.1.1.40"
FT                   /note="Similar to Escherichia coli NADP-dependent malic
FT                   enzyme MaeB or B2463 SW:MAO2_ECOLI (P76558) (759 aa) fasta
FT                   scores: E(): 8.6e-184, 62.13% id in 758 aa, and to
FT                   Pasteurella multocida Mdh Mdh_1 or pm0002 TR:Q9CPN5
FT                   (EMBL:AE006034) (758 aa) fasta scores: E(): 5.8e-179,
FT                   62.48% id in 757 aa"
FT                   /db_xref="GOA:Q7VZ22"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ22"
FT                   /protein_id="CAE41418.1"
FT                   /translation="MDENLTKLALDYHAYPTPGKISVTPTKTLANQDDLSLAYSPGVAA
FT                   ACMAIFDQGNDAASKYTSRSNLVGVITNGTAVLGLGNIGSLAAKPVMEGKGCLFKKFAG
FT                   IDVFDIELAENDPDKLVDIIAALEPTLGGVNLEDIKAPECFYIEKKLRERMNIPVFHDD
FT                   QHGTAIISSAAILNGLKVVGKDIGQVKLACSGAGAAAIACLDLLVHLGIKREHIYVVDS
FT                   RGVIWEGRDENMEPNKRRYAQKTEARTLADVVNGADVFLGCSTAGVLTPEMVKTMAAQP
FT                   LILALANPEPEIRPELAKAARPDCIVATGRSDYPNQVNNVLCFPFIFRGALDAGATRIT
FT                   EEMKLACVKAIAELAQAEQNDEVARAYAGQELSFGPDYIIPKPFDPRLIVQIAPAVAQA
FT                   AADSGVATRPIEDIEAYRQKLMGFVYHSGQLMRPLFQQAKQAPKRVVYADGEDERVLRA
FT                   VQTVIDEKLAEPILVGRPSVIEMRIKKFGLRMVPGQNVEIVDPEDDSRFNDTWNGYYQL
FT                   RGREGVTPAIAKAMIRKHNTLIGAMLLRRGDADALLCGVASKYDNQLKYVEEVIGRKPG
FT                   QTYGALNVLMLPNQTLFVTDTHVNENPSADEIANITIQAAEEMLRFGVMPKIALLSHSN
FT                   FGSRPTDSSRKMAHARKLVAERAPHLEVDGEMHADAALSESIRLQAYPDSTLKGRANLL
FT                   VMPNLDTGNITYNMLKMTGSNGIAMGPILLGSARPVHILTTSATVRRIVNMTALAVVDA
FT                   QQEAAEG"
FT   misc_feature    complement(133281..134246)
FT                   /note="HMMPfam hit to PF01515, Phosphate acetyl/butaryl
FT                   transferase"
FT   misc_feature    complement(134469..134603)
FT                   /note="HMMPfam hit to PF00390, Malic enzyme"
FT   misc_feature    complement(134664..135071)
FT                   /note="HMMPfam hit to PF00390, Malic enzyme"
FT   CDS             complement(135685..138381)
FT                   /transl_table=11
FT                   /gene="aceE"
FT                   /locus_tag="BP1121"
FT                   /product="pyruvate dehydrogenase E1 component"
FT                   /EC_number="1.2.4.1"
FT                   /note="Similar to Escherichia coli pyruvate dehydrogenase
FT                   E1 component AceE or B0114 or Z0124 or Ecs0118
FT                   SW:ODP1_ECOLI (P06958) (886 aa) fasta scores: E():
FT                   2.9e-181, 53.94% id in 862 aa, and to Alcaligenes eutrophus
FT                   pyruvate dehydrogenase E1 component PdhE TR:Q59107
FT                   (EMBL:X91878) (898 aa) fasta scores: E(): 0, 63.52% id in
FT                   869 aa. Also similar to BP1121, 54.711% identity (56.243%
FT                   ungapped) in 881 aa overlap."
FT                   /db_xref="GOA:Q7VZ21"
FT                   /db_xref="InterPro:IPR004660"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ21"
FT                   /protein_id="CAE41419.1"
FT                   /translation="MCNAQAGATPPQIPDPDPVETAEWCEALDSLTQAGGPERAAYVLQ
FT                   QLLARATALGVRAPGITRTAYLNTIAADQEPPFPGNLSLEERIASINRWNALAMVVRAN
FT                   QAHGELGGHIASYASAADLFEVGFNHFFRAPAPGFGGDLVYMQPHSAPGIYARAYLEGF
FT                   LNDVDLAHFRQEITAGAQGLRGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRY
FT                   LEHRSLAMPSDRKVWGIFGDGEMDEPESIAALTLAARERLDNLVFVINCNLQRLDGPVR
FT                   GNGRIIDELETLYAGAGWNVIKLVWGGDWDALLRRDPDGVLAGTFSHTVDGQFQTFAAN
FT                   DGAYNRQHFFGQDPRLSALVADWSDEAIDRLRRGGHDMVKIHAAYHRATHHRGQPTVIL
FT                   AQTKKGFGMGTAGQGKMTTHQQKKLDDEALLAFRDRFALPISDADCLALKFYKPAEDSA
FT                   ELRYLESRRAALGGYLPRRRTEAPRLAPPPVADWARFALQAAGKEMSSTMAIVRMLTAL
FT                   LKDPQLGPRIVPIVADEARTFGMANLFRQVGIYSAQGQLYEPEDIGSVLAYREARDGQI
FT                   LEEGITEAGAISSWTAAGTSYSVNGLPMLPFYIYYSMFGFQRIGDLIWAAADQRTRGFL
FT                   IGATSGRTTLGGEGLQHQDGYSHLAAAAVPNCRAYDPAYAYEVAVLVEHGMQRMLDEQC
FT                   DEFYYLTVTNENLAQPDMPEGEETRTGILRGMHRVRAADATPQVRLLGAGPMLDEAMRA
FT                   AQLLRDEHGLDAEVWSVTSFSELARGGRGAERAQALGLPCPDGNWLAQCLGDQATPVVA
FT                   VSDYVRAVPEQIRAWVPGPYRVLGTDGFGHSDTRARLRDFFEVGAPWIVLHALDLLARE
FT                   DSAWQPALQARREQLQAATRNVPSWQS"
FT   CDS             138507..138995
FT                   /transl_table=11
FT                   /locus_tag="BP1122"
FT                   /product="AsnC-family transcriptional regulator"
FT                   /note="Similar to Escherichia coli leucine-responsive
FT                   regulatory protein Lrp or AlsB or LivR or Ihb or OppI or
FT                   B0889 SW:LRP_ECOLI (P19494) (163 aa) fasta scores: E():
FT                   1.8e-21, 41.29% id in 155 aa, and to Pseudomonas putida bkd
FT                   operon transcriptional regulator BkdR SW:BKDR_PSEPU
FT                   (P42179) (161 aa) fasta scores: E(): 2.6e-32, 61.33% id in
FT                   150 aa"
FT                   /db_xref="GOA:Q7VZ20"
FT                   /db_xref="HSSP:1I1G"
FT                   /db_xref="InterPro:IPR019888"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ20"
FT                   /protein_id="CAE41420.1"
FT                   /translation="MPPHALDAIDRRILDLLQTDASLTNVELARRVHLSPSPCLARVKA
FT                   LEAAGIIRGYVALADPAQLGLNLNVFIQVSLEKQVESELERFQGAMADCPEVMECYLMT
FT                   GDADYLLRVVVADMPGLERFIVNRLSRIPGVKNIRSGFALKQVKYQTALPLRQGSGPQ"
FT   misc_feature    138594..138905
FT                   /note="HMMPfam hit to PF01037, AsnC family"
FT   CDS             139031..141079
FT                   /transl_table=11
FT                   /locus_tag="BP1123"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein Pa3934 TR:Q9HX82 (EMBL:AE004811) (678 aa) fasta
FT                   scores: E(): 1.7e-151, 66.22% id in 678 aa, and to
FT                   Neisseria meningitidis putative integral membrane protein
FT                   Nma0207 TR:Q9JWW6 (EMBL:AL162752) (672 aa) fasta scores:
FT                   E(): 4e-127, 56.58% id in 668 aa"
FT                   /db_xref="InterPro:IPR004813"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ19"
FT                   /protein_id="CAE41421.1"
FT                   /translation="MADATRIPDSVTLPELTLRGVLLGALITVIFTASNVFLGLKVGLT
FT                   FSSAIPAAVISMSVLRMFRDANILENNMVQTQASAAGTLSAIIFILPALVMMGHWQGFP
FT                   FWQTLAICGAGGMLGVMFTIPLRHIMVVQSDLPYPEGVAAAEILRVGSAEAPDTAPGRR
FT                   GASGMGDILAGGGVAALVSLATGGLRVLGDSFSWWGQLGASVFRLPMGFSLALLGAGYL
FT                   IGIVAGVAMLVGLLIAWLVAVPVLTATTPMPDGQSISAFANSLWASQVRFIGAGVIGVG
FT                   AIWTLATLFMPMVRGVRTSFAAFGRSGEAAYGSAPRTERDLPSRWISLITLALVAVLVG
FT                   VFAAFLQPAVLSPGARWGLVAYAVVFAFVFGFLVAAACGYMAGLIGSSTSPISGVGIVA
FT                   IVLVSLLMLAIQRGDGLLATPQGLQMGIALAIFTTSAVVAVASISNDNLQDLKTGWLVG
FT                   ATPWRQQVALLIGCVVGAAVISPVLELLYNAYGFGDALPRPGMDPSQALAAPQATLMLA
FT                   IAQGIFTHQLNWTMILIGMGVGVALIVIDQVLRRTCRVARLPVLAVGIGIYLPPSASAP
FT                   IVVGAVLAWLLEGALRRRAAAAGQDYERYAEGPNRRGVLVASGLIVGESLVGVLLAAVI
FT                   GATGDEAPLAVVGAGFGPTAEWLGFVVFAAVAVWIYRRVVRTRPEQA"
FT   misc_feature    join(139088..139147,139157..139210,139271..139330,
FT                   139340..139408,139541..139594,139637..139705,
FT                   139718..139786,139844..139912,140006..140074,
FT                   140117..140185,140204..140260,140303..140362,
FT                   140423..140491,140549..140602,140621..140680,
FT                   140723..140791,140870..140938,140966..141034)
FT                   /note="18 probable transmembrane helices predicted for
FT                   BP1123 by TMHMM2.0 at aa 20-39, 43-60, 81-100, 104-126,
FT                   171-188, 203-225, 230-252, 272-294, 326-348, 363-385,
FT                   392-410, 425-444, 465-487, 507-524, 531-550, 565-587,
FT                   614-636 and 646-668"
FT   CDS             141404..144274
FT                   /transl_table=11
FT                   /gene="odhA"
FT                   /gene_synonym="sucA"
FT                   /locus_tag="BP1124"
FT                   /product="2-oxoglutarate dehydrogenase E1 component"
FT                   /EC_number="1.2.4.2"
FT                   /note="Similar to Escherichia coli 2-oxoglutarate
FT                   dehydrogenase E1 component SucA or B0726 or Z0880 or
FT                   Ecs0751 SW:ODO1_ECOLI (P07015) (933 aa) fasta scores: E():
FT                   3e-194, 53.87% id in 941 aa, and to Alcaligenes eutrophus
FT                   oxoglutarate dehydrogenase OdhA SW:ODO1_ALCEU (Q59106) (950
FT                   aa) fasta scores: E(): 0, 73.52% id in 948 aa"
FT                   /db_xref="GOA:Q7VZ18"
FT                   /db_xref="InterPro:IPR011603"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ18"
FT                   /protein_id="CAE41422.1"
FT                   /translation="MSTESESLSTSYLFGGNAPYVEELYESYLDNPGSVPDNWREYFDQ
FT                   LQHSPATDGQEATRDQAHAPIVESFAQRARANAFVQRVAEPDLSVASKQVSVQSLIAAY
FT                   RSLGSRWADLDPLKRQERPAIPELDPAFYGLTEADLDQVYSATNTYFTTASTMTLRDIL
FT                   KALRDTYCRSVGAEFMHISDPAAKRWIQQRLESTFSAPVFSTEEKRHILQQLTESEGLE
FT                   RFLHTKYVGQKRFSLEGGESFIASMDEVVNHAGESGVQEIVVGMAHRGRLNLLVNIMGK
FT                   MPGDLFAEFEGKHAEGLTDGDVKYHNGFSSDLSTRGGPVHLSLAFNPSHLEIVNPVVEG
FT                   SVRARQERRGDGEGKQVLPVLVHGDAAFAGQGVVMETLNLAQTRGYGTGGTLHIVINNQ
FT                   IGFTTSDPRDSRSTLYCTDVVKMIEAPVFHVNGDDPEAVVFATRLALDYRMQFRHDVVL
FT                   DIVCFRKLGHNEQDTPSLTQPLMYKRIGHHPGTRKLYADKLTTQGVLAEGDADQLVKDY
FT                   RQLMEDGQRTIEPVLTDYKSKYAIDWSPFLGAKWTDQADTAVPLAELKRIGERITTVPE
FT                   GFTVHPLVAKLLNDRRNMAKGEVNLDWGMGEHLAFATLVASGYAVRITGQDSGRGTFTH
FT                   RHAVLHDQNRERWNDGFYVPLQNVSEGQAPFTVIDSVLSEEAVLAFEYGYSSAEPNTLT
FT                   IWEAQFGDFVNGAQVVIDQFITAGEAKWGRQSGLTLMLPHGYEGQGPEHSSGRIERFLQ
FT                   LCADHNIQVVQPTSAAQIFHLLRRQMIRPFRKPLVIFTPKSLLRNKDAGSPLTDLAGGS
FT                   FRPVIGEVDESIKAASVKRVLACSGKVYYDLVNARRERGADHVAIVRVEQLYPFAHKAF
FT                   ETELRKYPKATEVIWVQDEPQNQGPWFYVQHHLYENMADGQKLGYAGRAASASPAVGYL
FT                   AKHQEQQKALIEQAFAAKYKGFMLTK"
FT   misc_feature    141911..141976
FT                   /note="Predicted helix-turn-helix motif with score 1108
FT                   (+2.96 SD) at aa 170-191, sequence YCRSVGAEFMHISDPAAKRWIQ"
FT   misc_feature    142040..143002
FT                   /note="HMMPfam hit to PF00676, Dehydrogenase E1 component"
FT   misc_feature    144074..144103
FT                   /note="ScanRegExp hit to PS00904, Protein
FT                   prenyltransferases alpha subunit repeat signature."
FT   CDS             144320..145534
FT                   /transl_table=11
FT                   /gene="odhB"
FT                   /gene_synonym="sucB"
FT                   /locus_tag="BP1125"
FT                   /product="dihydrolipoamide succinyltransferase component of
FT                   2-oxoglutarate dehydrogenase complex"
FT                   /EC_number="2.3.1.61"
FT                   /note="Similar to Escherichia coli dihydrolipoamide
FT                   succinyltransferase component of 2-oxoglutarate
FT                   dehydrogenase complex SucB or B0727 or Z0881 or Ecs0752
FT                   TR:AAG55051 (EMBL:J01619) (405 aa) fasta scores: E():
FT                   2.3e-61, 53.54% id in 409 aa, and to Alcaligenes eutrophus
FT                   dihydrolipoamide succinyltransferase component of
FT                   2-oxoglutarate dehydrogenase complex SucB or OdhB
FT                   SW:ODO2_ALCEU (P52993) (416 aa) fasta scores: E(): 2.5e-63,
FT                   76.73% id in 417 aa"
FT                   /db_xref="GOA:Q7VZ17"
FT                   /db_xref="HSSP:1C4T"
FT                   /db_xref="InterPro:IPR006255"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ17"
FT                   /protein_id="CAE41423.1"
FT                   /translation="MAITDVLVPQLSESVSEATLLTWKKQAGAAVEADEILIEIETDKV
FT                   VLEVPAPSSGVLSEIVMGDGSTVTSGEVIARIDTAAKAAAAPAAAAEAPAAAAAPAAAA
FT                   PAAASSAASGVASPAAAKILAEKGVDAASVAGTGRDGRVTKGDALAAGNAPAAKAAAPV
FT                   APPTLSLDGRPEQRVPMSRLRARIAERLLQSQAENAILTTFNEVNMQAVMDLRARYKDK
FT                   FEKEHGVKLGFMSFFVKAAVAALKKYPVLNASVDGKDIIYHGYFDIGIAVGTPRGLVVP
FT                   ILRNADQLTIAEIEKTIADFGKRAADGKLGIEEMTGGTFSISNGGVFGSMLSTPIINPP
FT                   QAAILGIHATKERPVVENGQIVIRPINYLAMSYDHRIIDGREAVLGLVAMKEALEDPQR
FT                   LLLDL"
FT   misc_feature    144329..144550
FT                   /note="HMMPfam hit to PF00364, Biotin-requiring enzyme"
FT   misc_feature    144401..144490
FT                   /note="ScanRegExp hit to PS00189, 2-oxo acid dehydrogenases
FT                   acyltransferase component lipoyl binding site. Confirmed by
FT                   InterPro eMOTIF pattern match."
FT   misc_feature    144869..145528
FT                   /note="HMMPfam hit to PF00198, 2-oxo acid dehydrogenases
FT                   acyltransferase (catalytic domain)"
FT   CDS             145764..147191
FT                   /transl_table=11
FT                   /gene="odhL"
FT                   /locus_tag="BP1126"
FT                   /product="2-oxoglutarate dehydrogenase complex, E3
FT                   component"
FT                   /EC_number="1.8.1.4"
FT                   /note="Similar to Alcaligenes eutrophus dihydrolipoamide
FT                   dehydrogenase OdhL SW:DLDH_ALCEU (P52992) (474 aa) fasta
FT                   scores: E(): 4.8e-107, 60.29% id in 476 aa, and to
FT                   Neisseria meningitidis putative dihydrolipoamide
FT                   dehydrogenase e3 component lpda3 or nma1151 TR:Q9JUT1
FT                   (EMBL:AL162755) (477 aa) fasta scores: E(): 1.8e-109,
FT                   64.34% id in 474 aa"
FT                   /db_xref="GOA:Q7VZ16"
FT                   /db_xref="HSSP:1DXL"
FT                   /db_xref="InterPro:IPR006258"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ16"
FT                   /protein_id="CAE41424.1"
FT                   /translation="MSKQFDVVVIGAGPGGYIAAIRAAQLGMSVACIDAWQNGQGGPAP
FT                   GGTCTNVGCIPSKALLQSSEHYEQANHHFAEHGIEVKGVSLKLDTLIGRKNTVVKQNND
FT                   GILYLFKKNKVTYFHGKGAFAGQVDGGWSIKVTGTTDADLVAKHVIVATGSSARELPGL
FT                   PFDEKNILSNDGALNIGAVPKKLGVIGAGVIGLEMGSVWRRLGAEVTILEAMPEFLAAA
FT                   DQQVAKEALKSFAKQGLDIQTGVKIGEIKAAAKSITVPYVDAKGAEQKLVVDKLIVSIG
FT                   RVPYTGGLNAEAVGLKLDERGFVAVDEDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAV
FT                   AERIAGQHGHVNFATVPWVIYTSPEIAWVGKTEQQLKAEGREYKAGSFPFMANGRARAL
FT                   GDTTGFAKVIADAKTDEVLGVHIIGPMASELISEAVTIMEFRGAAEDIARICHAHPTLS
FT                   EAVKEAALAVDKRTLNF"
FT   misc_feature    145782..146732
FT                   /note="HMMPfam hit to PF00070, Pyridine
FT                   nucleotide-disulphide oxidoreductase"
FT   CDS             147247..148380
FT                   /transl_table=11
FT                   /locus_tag="BP1127"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Alcaligenes eutrophus odhA, odhB, odhL,
FT                   orf1 and orf5 genes TR:Q44029 (EMBL:X91877) (186 aa) fasta
FT                   scores: E(): 5e-56, 77.83% id in 185 aa, and to Pseudomonas
FT                   aeruginosa hypothetical protein Pa4438 pa4438 TR:Q9HVX7
FT                   (EMBL:AE004858) (364 aa) fasta scores: E(): 1e-64, 49.31%
FT                   id in 363 aa"
FT                   /db_xref="GOA:Q7VZ15"
FT                   /db_xref="InterPro:IPR005654"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ15"
FT                   /protein_id="CAE41425.1"
FT                   /translation="MCNPPLCFGFSGCDMNVREYYEHALAERGYQPDEAQLQAVERLQR
FT                   YYDEWVRFKALRSNALKKLLNRLDVPRGVYLWGGVGRGKSFLMDAFYATVPVVRKTRLH
FT                   FHEFMRGVHRELEEVKGTQDPLDEVARRLARRYRLICFDEFHVSDVADAMILYRLLLKL
FT                   FEHGTSFVMTSNYEPSTLYPDGLHRDRILPAIALIQGRMDVLNVDAGIDYRRRSLEQVQ
FT                   CYHTPLDAQARQALEHAFAQLSDTAPQDPVLHIEHREIRAQALAGSVVWFDFATLCGGP
FT                   RSQNDYLELANRFHAVILSDVPRMGPRQASEARRFTWLIDVFYDHKVKLIMSAEVEPEQ
FT                   LYTEGALANEFHRTVSRILEMQSREYLEAERRLAVTL"
FT   misc_feature    147478..147501
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   CDS             complement(148393..149151)
FT                   /transl_table=11
FT                   /gene="fabG"
FT                   /locus_tag="BP1128"
FT                   /product="3-oxoacyl-[acyl-carrier protein] reductase"
FT                   /EC_number="1.1.1.100"
FT                   /note="Similar to Escherichia coli 3-oxoacyl-[acyl-carrier
FT                   protein] reductase FabG or B1093 SW:FABG_ECOLI (P25716)
FT                   (244 aa) fasta scores: E(): 6e-23, 38.73% id in 253 aa, and
FT                   to Pseudomonas aeruginosa 3-oxoacyl-[acyl-carrier protein]
FT                   reductase FabG or Pa2967 SW:FABG_PSEAE (O54438) (247 aa)
FT                   fasta scores: E(): 5.2e-25, 40.07% id in 252 aa"
FT                   /db_xref="GOA:Q7VZ14"
FT                   /db_xref="HSSP:1Q7B"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ14"
FT                   /protein_id="CAE41426.1"
FT                   /translation="MTAANRTALVTGAARGIDLAIATRLALDGHPVIMLDASPDVQASA
FT                   RALAGRGLRAHGMRLDIADEQAVRDLPRRCGQWWENLAIVVNNAGISPKHEGRKRKVAD
FT                   MPLDEWRRVLDVNLTGTFLVTQTCLPALIAAGWGRIIMITSQAARTRTPVPGAHYSATK
FT                   SGMTGLARVLAGEVAEHGITVNCVAPGRIQSAMTAEVGGAVNASHSATVPLGRLGLPEE
FT                   VAATVAFLASDGAGYTTGATIDVNGGSFML"
FT   misc_feature    complement(148417..148509)
FT                   /note="HMMPfam hit to PF00678,"
FT   misc_feature    complement(148567..149136)
FT                   /note="HMMPfam hit to PF00106, short chain dehydrogenase"
FT   CDS             149239..150141
FT                   /transl_table=11
FT                   /locus_tag="BP1129"
FT                   /product="LysR-family transcriptional regulator"
FT                   /note="Similar to Frateuria spANA-18 regulator of cat2 gene
FT                   cluster OrfR2 TR:Q9Z9Y2 (EMBL:AB009373) (295 aa) fasta
FT                   scores: E(): 3.1e-30, 37.96% id in 295 aa, and to
FT                   Deinococcus radiodurans transcriptional regulator, LysR
FT                   family dr0615 TR:Q9RWQ1 (EMBL:AE001919) (317 aa) fasta
FT                   scores: E(): 1.4e-31, 39.35% id in 310 aa"
FT                   /db_xref="GOA:Q7VZ13"
FT                   /db_xref="HSSP:1IXC"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ13"
FT                   /protein_id="CAE41427.1"
FT                   /translation="MELRHLRYFLMLAETLHFGRAASRLGIAQPPLSRQIRDLEEQVGA
FT                   TLFYRGTRGVSLTDAGVAFAQRAAQIVAAADEAVFEAREAGQGRTGRIVIGFVHSLAYS
FT                   LLPRVLPGFRQKHPGIAVSLREVTVADKESALLSGQIDTGIYRPTVRHPEIATLPIFEE
FT                   GFVLALPSGHPLARKRRVSVHSLRDQPLILFRALRGDVGLHGTIAAFLRAHDVPVKACE
FT                   EVGTIHAGMGLVLAGVGVCIIPETSRMVHIEGVVTRPFAEATTRVSSTVCWRHQDSSRS
FT                   LDAWVRHVRELIRTGESAG"
FT   misc_feature    149245..149673
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family"
FT   misc_feature    149284..149349
FT                   /note="Predicted helix-turn-helix motif with score 1295
FT                   (+3.60 SD) at aa 31-52, sequence LHFGRAASRLGIAQPPLSRQIR"
FT   misc_feature    149287..149379
FT                   /note="ScanRegExp hit to PS00044, Bacterial regulatory
FT                   proteins, lysR family signature."
FT   CDS             complement(150138..151088)
FT                   /transl_table=11
FT                   /locus_tag="BP1130"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTA3"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTA3"
FT                   /protein_id="CAE41428.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS"
FT   repeat_region   150138..150169
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   complement(150138..151190)
FT   misc_feature    complement(150174..150707)
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   misc_feature    complement(150765..150830)
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   repeat_region   complement(151159..151190)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(151218..152201)
FT                   /transl_table=11
FT                   /locus_tag="BP1131"
FT                   /product="putattive exported protein"
FT                   /note="Similar to Rhizobium meliloti conserved hypothetical
FT                   protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta
FT                   scores: E(): 1.2e-52, 46.95% id in 328 aa, and to
FT                   Agrobacterium tumefaciens Agr_l_312p TR:AAK88723
FT                   (EMBL:AE008213) (329 aa) fasta scores: E(): 1.4e-49, 45.39%
FT                   id in 315 aa"
FT                   /db_xref="GOA:Q7VZ12"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ12"
FT                   /protein_id="CAE41429.1"
FT                   /translation="MTFITLRAQACLAALLALAGASGAMAAGYPAQPIRLIVPYAAGGT
FT                   TDLIARLVGQHMGTKLGQPVIVENKAGAGGNIGTEQVSRATPDGYTLLLGTAGNMTVNQ
FT                   AIYKDMAFDPNKDFQPISLIATLPNLMVVNKTVPAQTTKEFVAWAKENPKTVFFASSGV
FT                   GSTTHLTGELFNMATGLHMEHVPYKGSGPALIDLVGGTGPVVMFDNMPSAIALVRDGSL
FT                   RALAVTGPDRESSAKDIPTVKESGYPDFDVVTWFGLFAPAGTPADVVQKLNKTVQEVVH
FT                   SPQVSKRLSELGATPKTNSPQEYATIMKDDTAKWAKVVKTANIVKP"
FT   misc_feature    complement(152100..152165)
FT                   /note="1 probable transmembrane helix predicted for BP1131
FT                   by TMHMM2.0 at aa 12-34"
FT   misc_feature    complement(152124..152201)
FT                   /note="Signal peptide predicted for BP1131 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.995 between residues 26 and 27"
FT   CDS             complement(152256..152978)
FT                   /transl_table=11
FT                   /locus_tag="BP1132"
FT                   /product="probable short-chain dehydrogenase"
FT                   /note="Similar to Vibrio harveyi 3-oxoacyl-[acyl-carrier
FT                   protein] reductase FabG SW:FABG_VIBHA (P55336) (244 aa)
FT                   fasta scores: E(): 6.5e-16, 40.85% id in 235 aa, and to
FT                   Pseudomonas aeruginosa probable short-chain dehydrogenase
FT                   Pa4162 TR:Q9HWL9 (EMBL:AE004832) (238 aa) fasta scores:
FT                   E(): 4.7e-32, 47.8% id in 228 aa"
FT                   /db_xref="GOA:Q7VZ11"
FT                   /db_xref="HSSP:1Q7B"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ11"
FT                   /protein_id="CAE41430.1"
FT                   /translation="MTRAQGYTLITGATRGIGRAIADLLAARGEPVMGIARSGDAGFPG
FT                   PLLQADLLDAAQRREVLREAASHGVLRLVNNAGFNQMQPLGEITDAATSAILELNIAVA
FT                   IDAAQAVLPGMTEAGAGRIVNIASRSLLARPGGSVYSAAKAAMVGLTRSWALELATRGI
FT                   TVNCVAPGPVATEMFQRNNPPELARSRALVEAIPVARLGTPEEIAHAVDYFLAPHAAYT
FT                   TGQTLFVCGGASISQIKL"
FT   misc_feature    complement(152292..152384)
FT                   /note="HMMPfam hit to PF00678,"
FT   misc_feature    complement(152451..152963)
FT                   /note="HMMPfam hit to PF00106, short chain dehydrogenase"
FT   misc_feature    complement(152514..152600)
FT                   /note="ScanRegExp hit to PS00061, Short-chain
FT                   dehydrogenases/reductases family signature."
FT   CDS             complement(join(152975..153346,154396..154491,
FT                   154491..154760,154760..154858))
FT                   /pseudo
FT                   /transl_table=11
FT                   /gene="tauD"
FT                   /gene_synonym="ssiD"
FT                   /locus_tag="BP1135"
FT                   /product="alpha-ketoglutarate-dependent taurine dioxygenase
FT                   (Pseudogene)"
FT                   /EC_number="1.14.11.17"
FT                   /note="Pseudogene. This CDS appears to have two frameshift
FT                   mutations following codons 33 and 123 (the sequence has
FT                   been checked and believed to be correct), and disrupted by
FT                   the insertion of IS481 element following codon 155. Similar
FT                   to Escherichia coli alpha-ketoglutarate-dependent taurine
FT                   dioxygenase TauD or SsiD or B0368 SW:TAUD_ECOLI (P37610)
FT                   (282 aa) fasta scores: E(): 1.2e-37, 38.9% id in 275 aa,
FT                   and to Pseudomonas aeruginosa taurine dioxygenase TauD or
FT                   Pa3935 TR:Q9HX81 (EMBL:AE004811) (277 aa) fasta scores:
FT                   E(): 3.1e-35, 39.78% id in 279 aa. Also similar to BP3856"
FT                   /db_xref="PSEUDO:CAE41431.1"
FT   repeat_region   153345..153375
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   153345..154396
FT   CDS             153446..154396
FT                   /transl_table=11
FT                   /locus_tag="BP1134"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTA8"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTA8"
FT                   /protein_id="CAE41432.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHR"
FT   misc_feature    153704..153769
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   misc_feature    153827..154360
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   repeat_region   complement(154365..154396)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   variation       complement(154491..154493)
FT                   /note="13 bp deletion in pertussis, relative to
FT                   parapertussis and bronchiseptica, following this codon"
FT   variation       complement(154761..154762)
FT                   /note="CC in pertussis; (A)CC in parapertussis and
FT                   bronchiseptica"
FT   CDS             155118..155651
FT                   /transl_table=11
FT                   /gene="fecI"
FT                   /locus_tag="BP1136"
FT                   /product="ECF-family sigma factor"
FT                   /note="Similar to Escherichia coli probable RNA polymerase
FT                   sigma factor FecI or B4293 SW:FECI_ECOLI (P23484) (173 aa)
FT                   fasta scores: E(): 1e-21, 43.82% id in 162 aa, and to
FT                   Pseudomonas aeruginosa putative RNA polymerase sigma factor
FT                   Pa3899 TR:Q9HXB4 (EMBL:AE004807) (169 aa) fasta scores:
FT                   E(): 1.9e-31, 54.54% id in 165 aa. Also similar to BP0349,
FT                   46.875% identity in 160 aa overlap"
FT                   /db_xref="GOA:Q7VZ10"
FT                   /db_xref="InterPro:IPR007627"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ10"
FT                   /protein_id="CAE41433.1"
FT                   /translation="MPASLITSPSARPAADTAAVEGLYRQHRSWLAGWLRRRLGCPHRA
FT                   EDLTQDVFVRVIQGRKAVRMEQARALLATIAKGLVIDHQRRAALEHAYLEYLAAQPSGH
FT                   APSPQQQAELLQALVELDRLLEGLPPHARAVFLMSQLEGLGYAEIAQRLRISLSSVQQY
FT                   MLRAMSACYMAFHE"
FT   misc_feature    155214..155378
FT                   /note="HMMPfam hit to PF00776, Sigma-70 factor (ECF
FT                   subfamily)"
FT   misc_feature    155547..155612
FT                   /note="Predicted helix-turn-helix motif with score 1074
FT                   (+2.84 SD) at aa 144-165, sequence LGYAEIAQRLRISLSSVQQYML"
FT   CDS             155644..156606
FT                   /transl_table=11
FT                   /gene="fecR"
FT                   /locus_tag="BP1137"
FT                   /product="putative signal transduction protein"
FT                   /note="Similar to Escherichia coli protein FecR or B4292
FT                   SW:FECR_ECOLI (P23485) (317 aa) fasta scores: E(): 5.3e-19,
FT                   32.17% id in 317 aa, and to Pseudomonas putida pupI and
FT                   pupR genes PupR TR:Q52209 (EMBL:X77918) (324 aa) fasta
FT                   scores: E(): 1.3e-28, 37.88% id in 322 aa"
FT                   /db_xref="InterPro:IPR006311"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ09"
FT                   /protein_id="CAE41434.1"
FT                   /translation="MSRPAAPDAVAQQAIAWWVRLQSGCAAAAEHEACRAWLARDKAHQ
FT                   RAWDRVATLAAGIRRAPAAPALAILPDLASRGPSRRQALRLLAGLGVGAAAGAGAYSWA
FT                   PWQRLVADASTGVGERRQIVPGPGVRLVLASDSAVRLRIDATRRAIALLRGEMLVDVHS
FT                   GAAQPALQVDTGYGMALAEQARFGVCRAGGSARIGVYAGSVQVASAPHAPWHRGEAGES
FT                   LRLDGAGVPRRGRVAADESAWEDGLLVVHGWRLDRLAAQLARYRLGVIRVDPAVAGLRL
FT                   SGVFPLDDAERALAAVRQSLPIEIRRHTAYWLSVTPRAA"
FT   CDS             156700..159177
FT                   /transl_table=11
FT                   /gene="bfrH"
FT                   /locus_tag="BP1138"
FT                   /product="putative ferric siderophore receptor"
FT                   /note="Similar to Escherichia coli ferrichrome-iron
FT                   receptor precursor FhuA or TonA or B0150 SW:FHUA_ECOLI
FT                   (P06971) (747 aa) fasta scores: E(): 4.9e-61, 38.21% id in
FT                   717 aa, and to Burkholderia cepacia ornibactin receptor
FT                   precursor OrbA TR:Q9F480 (EMBL:AF013993) (755 aa) fasta
FT                   scores: E(): 6.7e-72, 36.05% id in 746 aa"
FT                   /db_xref="GOA:Q7VZ08"
FT                   /db_xref="HSSP:1BY5"
FT                   /db_xref="InterPro:IPR010105"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ08"
FT                   /protein_id="CAE41435.1"
FT                   /translation="MFSRSQKHPSWRLSPCVLAAALCAVAVGSADTARAQAPAASAQHY
FT                   EIAAGPLADALTRFARRAGVVLSFDPALVQGRSTAGLQGVYGVRDGFAALLAGSGLQAR
FT                   AGGGNNWSLAALPRGGDAQTLAPVTVLGLEGALAPTVGYVASASLSGTKTDTPLIETPQ
FT                   SISVVTRDQITEQGAQTLNQVLRYTAGVATETRGATATRLDQFSVRGFSAATYLDGMRV
FT                   FGGRDALPQVDAYRLERVDVLKGPASVLYGQGGPGGVVNQVSKRPLDEPLREIEVQAGN
FT                   FDFRRVNMDFSGPVDEDRRFLYRVTGAAYMSDGQVDHTRERRYFVSPSFTWRPSADTTL
FT                   TVLTNFQRDPDMGSYGSISAMRTLLSAPDGRRLGPNHYDGDADFEKSDRRSYSLGYQLE
FT                   HRFNDTFKASQNLRFQHAEGVYRSIYGASNNNYGYLDKDYRYSQRGLAISDVDVDAFTI
FT                   DNNLQARFDTGALAHTVLVGFDYQRVQTDTLSGYGSAPPLDVFDPDYHMGIERPPFTSD
FT                   QTQYNYQTGLYLQDQIRLDRLSLLLGGRYDWSRTHTGTDNLANGSHSSSALAAEAFTGR
FT                   VGAIYNFDNGVAPYASYSESFEPQTGTGWNNTPFKPTEGKQYEVGVKYQPPGSATLLTL
FT                   AAFDIRRKNLPTTDPDPTHMCGVSRCSIQAGEVRTRGIELEAKTEPLRGLSLIAAYSYL
FT                   DNEYEKAYPNTTGLDLKGKKPVAVPAHQASAWARYQLQEGPLAGLGMGAGVRYIGSSYA
FT                   NETNTLKVPSVTLVDMMLDYDLGRASPALKGMQVALNVSNLFDKEYIGSCLSDSWCWYG
FT                   YQRSIKASLRYRW"
FT   misc_feature    156700..156786
FT                   /note="Signal peptide predicted for BP1138 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.360 between residues 29 and 30"
FT   misc_feature    158836..159174
FT                   /note="HMMPfam hit to PF00593, TonB dependent receptor
FT                   C-terminal region"
FT   CDS             159294..159602
FT                   /transl_table=11
FT                   /locus_tag="BP1139"
FT                   /product="putative iron uptake protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein Pa0800 TR:Q9I5D8 (EMBL:AE004515) (177 aa) fasta
FT                   scores: E(): 1.4e-08, 44.82% id in 87 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ07"
FT                   /protein_id="CAE41436.1"
FT                   /translation="MKAPAAGAHMLHYRFAVTSRALAAILGGYALSSAAAACLAVWLPM
FT                   RRVDAVVAALMLSFVVYTCAVLWVFATRNAWRAWAGVLLPALALLMLYWLGKAAGGA"
FT   misc_feature    159294..159404
FT                   /note="Signal peptide predicted for BP1139 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.891) with cleavage site
FT                   probability 0.480 between residues 37 and 38"
FT   misc_feature    join(159354..159422,159435..159503,159522..159581)
FT                   /note="3 probable transmembrane helices predicted for
FT                   BP1139 by TMHMM2.0 at aa 21-43, 48-70 and 77-96"
FT   misc_feature    159375..159407
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             join(159599..160660,160664..161242)
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP1140"
FT                   /product="putative iron uptake protein (Pseudogene)"
FT                   /note="Pseudogene. This CDS contains an in-frame TGA stop
FT                   codon. The sequence has been checked and believed to be
FT                   correct.Similar to Pseudomonas aeruginosa hypothetical
FT                   protein Pa0801 TR:Q9I5D7 (EMBL:AE004515) (506 aa) fasta
FT                   scores: E(): 5.9e-64, 40.73% id in 518 aa"
FT                   /db_xref="PSEUDO:CAE41437.1"
FT   variation       160661..160663
FT                   /note="TGA stop in pertussis; TGG in parapertussis and
FT                   bronchiseptica"
FT   CDS             161247..161573
FT                   /transl_table=11
FT                   /locus_tag="BP1141"
FT                   /product="putative iron uptake protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein Pa0802 TR:Q9I5D6 (EMBL:AE004515) (107 aa) fasta
FT                   scores: E(): 8.5e-05, 37.25% id in 102 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ06"
FT                   /protein_id="CAE41438.1"
FT                   /translation="MLNATAFCLAYAGFAALSLGMDRHYEDVFDRALPRRRRLALRSLE
FT                   WLGLALSLWASAGAWGWNYGTVEWIGILSLAGLLLIWLLTFWPRAALGAGGACALAAPV
FT                   LALL"
FT   misc_feature    161247..161306
FT                   /note="Signal peptide predicted for BP1141 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.865) with cleavage site
FT                   probability 0.479 between residues 20 and 21"
FT   misc_feature    join(161361..161429,161439..161507)
FT                   /note="2 probable transmembrane helices predicted for
FT                   BP1141 by TMHMM2.0 at aa 39-61 and 65-87"
FT   repeat_region   161620..161651
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   161620..162672
FT   CDS             161722..162672
FT                   /transl_table=11
FT                   /locus_tag="BP1142"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q84CT8"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q84CT8"
FT                   /protein_id="CAE41439.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT"
FT   misc_feature    161980..162045
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   misc_feature    162103..162636
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   repeat_region   complement(162641..162672)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             162682..164037
FT                   /transl_table=11
FT                   /gene="trpS"
FT                   /locus_tag="BP1143"
FT                   /product="tryptophanyl-tRNA synthetase"
FT                   /EC_number="6.1.1.2"
FT                   /note="Similar to Escherichia coli tryptophanyl-tRNA
FT                   synthetase TrpS or B3384 SW:SYW_ECOLI (P00954) (334 aa)
FT                   fasta scores: E(): 1e-25, 34.91% id in 338 aa, and to
FT                   Pseudomonas aeruginosa tryptophanyl-tRNA synthetase TrpS or
FT                   Pa4439 TR:Q9HVX6 (EMBL:AE004858) (448 aa) fasta scores:
FT                   E(): 1e-110, 65.7% id in 449 aa"
FT                   /db_xref="GOA:Q7VZ05"
FT                   /db_xref="InterPro:IPR002306"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VZ05"
FT                   /protein_id="CAE41440.1"
FT                   /translation="MNTRVLTGITTTGTPHLGNYAGAIRPAIQASTQPGVDAFFFLADY
FT                   HALIKCDDPARVARSRLELAATWLAAGLDPERVTFYRQSDIPEITELCWLLTCVTPKGL
FT                   MNRAHAYKASVDQNAAKGVEPDDGVTMGLFSYPVLMAADILLFNANQVPVGRDQVQHLE
FT                   MARDIAQRFNHLYGREFFVLPEVVIAEEVATLPGLDGRKMSKSYNNTIPLFEGGAAGLR
FT                   NATQRIVTDSRLPGEPKDAEASHLYMLYRAFSTQQESMAFRRQLEEGMGWGDAKQALYE
FT                   RLERDLAPMRERYVELISNPGLIEDILQVGAAKARKLAQPLVRTLRDAVGLGVLQPAAA
FT                   KAAQPARKAAKDARFVSFRDEDGSFRFRLLAADGEELLCSVPFANPKEAGALMRRLQDE
FT                   APEQALRGHDDVSYAAWLDGKEVAYGPQAADAGARDALLAKAREALAQLAAA"
FT   misc_feature    162694..163380
FT                   /note="HMMPfam hit to PF00579, tRNA synthetases class I (W
FT                   and Y)"
FT   CDS             complement(164118..166493)
FT                   /transl_table=11
FT                   /gene="tex"
FT                   /locus_tag="BP1144"
FT                   /product="transcription accessory protein"
FT                   /note="Identical to the previously sequenced Bordetella
FT                   pertussis Tex protein SW:TEX_BORPE (Q45388) (791 aa) fasta
FT                   scores: E(): 0, 99.36% id in 791 aa, and to Escherichia
FT                   coli protein YhgF or B3407 SW:YHGF_ECOLI (P46837) (773 aa)
FT                   fasta scores: E(): 5.2e-166, 61.35% id in 766 aa"
FT                   /db_xref="GOA:Q45388"
FT                   /db_xref="HSSP:1SRO"
FT                   /db_xref="InterPro:IPR018974"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q45388"
FT                   /protein_id="CAE41441.1"
FT                   /translation="MPETSATTNAAPGVDHARIIAQLATEIGARASQVASAVELLDDGA
FT                   TVPFIARYRKEATGGLDDGALRTLEVRLGYLRELEERRGAILESITQQGKLTPELQQEI
FT                   ATAETKQRLEDLYAPYKPKRRTRAQIAREAGLEPLADAILADPACDPAALAAQYLNPEA
FT                   SINDAKAALDGARDILAERHAENADLLADIREHLWSTGLLYSKMVEGKETDGANFRDWF
FT                   DFNEPLRTLPSHRILALMRGRQQGVLELRVGLEADLEAETPHPCVVRIASFLKLGNGLF
FT                   ALDATPRARWLGEVCRWTWRVKLLTAFESELFGRLRESAEAEAIRVFAANLKDLLLAAP
FT                   AGPKTVLGLDPGIRTGCKVAVIDRTGKVVDTATVYPFEPRRDREGTIKTLAALAARHKV
FT                   ELIAIGNGTASRESEKLVGDMMARFPDLALTRVVVSEAGASVYSASETAALEFPDLDVT
FT                   LRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVNQRELARSLDAVVEDCVNAVGVDV
FT                   NTASAALLARVSGLNTLLAKNIVAWRDENGAFPTRDMLRKVPRFGEKAFEQAAGFLRIP
FT                   NGDNPLDASAVHPEAYPVVERIVARIKADVRHIIGQREALKGVSPSDFTDERFGLPTVR
FT                   DIFAELEKPGRDPRPEFKTAQFKEGVETLNDLFPGMVLEGVVTNVANFGAFVDIGVHQD
FT                   GLVHISALAEKFVKDPRDVVRVGQTVTVKVLEVDVARKRVALTMRLNDAAEPARRGNGA
FT                   GAGAARGADRGARRPQADNGKGAPANSAMADAFAKLKR"
FT   misc_feature    complement(164277..164498)
FT                   /note="HMMPfam hit to PF00575, S1 RNA binding domain"
FT   CDS             166658..168733
FT                   /transl_table=11
FT                   /locus_tag="BP1145"
FT                   /product="probable ATP-dependent helicase"
FT                   /note="Similar to Escherichia coli probable ATP-dependent
FT                   helicase DinG or RarB or B0799 SW:DING_ECOLI (P27296) (716
FT                   aa) fasta scores: E(): 2.1e-27, 30.15% id in 703 aa, and to
FT                   Escherichia coli probable ATP-dependent helicase YoaA or
FT                   B1808 SW:YOAA_ECOLI (P76257) (636 aa) fasta scores: E():
FT                   3.1e-41, 40.49% id in 684 aa"
FT                   /db_xref="GOA:Q7VZ04"
FT                   /db_xref="InterPro:IPR014001"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ04"
FT                   /protein_id="CAE41442.1"
FT                   /translation="MLDLDISEFFADDGPLARAMPGYRPRQSQVELAQAIDSAIAARAT
FT                   LVAEAGTGIGKTWAYLVPAFAQGGKVLISTGTRTLQDQLFARDLPKVRQALAAPVTAAL
FT                   LKGRGNYVCHYHLDRLQGDDRALKSRAEIGQLRQIQVFAGISKTGDRAELAQVPEDADI
FT                   WQRVTSTRENCLGQECPRIRDCFVVKARRQAQEADVVVVNHALFMADLVLREEGVTDLL
FT                   PEVDTVIFDEAHQLPDTATRFLGSSVSTHQLLDFARTLEAAGLAYAREAAKWSDVGRQV
FT                   ETAARELRLACAPLERLPGRKATFEAMPDPDEFDAALASLREVLDAAVRALSGVAEKHP
FT                   DLAAAARAGAEISVRLSRWATPPRHAAQAAEHDEGWGRDDQGVAVAAPSEALLAEAAAA
FT                   ANWSGPAVRWVEHGQHHVRLHAAPLSVAQAFSRYRKPGQAWILTSATLSVYGDFGHFTR
FT                   QLGLEDARTGRWESPFDYPAQGLLFVPRDMPEPQSPRFVERFVENLLPLLEASPGGALV
FT                   LCTTLRAVDKVAQLLTDAFADAGHDWPLLRQGEATRRDLLERFCKLEHPVLVGSASFWE
FT                   GIDLPGDVLTLVAIDKLPFAPPDDPVIEARLRACRLRGGNPFAEYQLPEAAISLKQGAG
FT                   RLIRTETDWGVLMVGDARLVEKPYGKRLWRGLPPFARTRDMNEALAFYARMGEAEP"
FT   misc_feature    166805..166828
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   CDS             complement(168795..169595)
FT                   /transl_table=11
FT                   /gene="comL"
FT                   /locus_tag="BP1146"
FT                   /product="competence lipoprotein precursor"
FT                   /note="Similar to Neisseria gonorrhoeae competence
FT                   lipoprotein ComL precursor SW:COML_NEIGO (Q50985) (267 aa)
FT                   fasta scores: E(): 2.2e-40, 45.17% id in 259 aa, and to
FT                   Pseudomonas aeruginosa hypothetical lipoprotein Pa4545
FT                   precursor SW:Y9F5_PSEAE (P33641) (341 aa) fasta scores:
FT                   E(): 1.7e-35, 41.47% id in 258 aa"
FT                   /db_xref="InterPro:IPR017689"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ03"
FT                   /protein_id="CAE41443.1"
FT                   /translation="MALRAAIALSTILIVAGCGSSSTKYDKTAGWSAEQLYADAKQEVA
FT                   AGNWTDARERLTAIESRYPFGTYAQQALIELAYVNWKDGENEQALAAIDRFQQLYPNHP
FT                   GTDYVLYLKGLVNFTPASAFMSNLTGQDPAERDPKGLRASYDAFNELVQRFPNSKYTPD
FT                   AQKRMTWLVNAIAMNEVHVARYYYERGAYVAAANRAQTVITDFEGAPASEEALYIMVES
FT                   YDKLGMTELKGDAERVLDQNYPNSKFKTQGLSADKSWWNPFSWR"
FT   misc_feature    complement(169524..169595)
FT                   /note="Signal peptide predicted for BP1146 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.753) with cleavage site
FT                   probability 0.453 between residues 24 and 25"
FT   misc_feature    complement(169542..169574)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             169697..170659
FT                   /transl_table=11
FT                   /gene="rluD"
FT                   /gene_synonym="sfhB"
FT                   /locus_tag="BP1147"
FT                   /product="ribosomal large subunit pseudouridine synthase D"
FT                   /EC_number="4.2.1.70"
FT                   /note="Similar to Escherichia coli ribosomal large subunit
FT                   pseudouridine synthase D RluD or Sfhb or B2594
FT                   SW:RLUD_ECOLI (P33643) (326 aa) fasta scores: E(): 5.1e-40,
FT                   44.26% id in 314 aa, and to Neisseria meningitidis
FT                   ribosomal large subunit pseudouridine synthase D Nmb0704
FT                   TR:Q9K0B0 (EMBL:AE002425) (374 aa) fasta scores: E():
FT                   1.1e-45, 46.84% id in 333 aa"
FT                   /db_xref="GOA:Q7VZ02"
FT                   /db_xref="HSSP:1PRZ"
FT                   /db_xref="InterPro:IPR006225"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ02"
FT                   /protein_id="CAE41444.1"
FT                   /translation="MSDTAASVDLLSDDEPLLLTVPPDTPADRLDKVLAGLLPGHSRSR
FT                   LQGWIEAGYVLVNGAQAKVRQAVGPGDVLSVWEQPAPESRAFAPEPVAFDVVAESPDWI
FT                   VVDKPAGLVTHPGAGNWSGTLLNGLLHRYPELARVARAGIVHRLDKDTSGLMVVARNER
FT                   AQTHLVRQLQARTMGRQYIALAHGWLGAAGTVDRPIGRDARVPVRMSVERPIAPKPAVT
FT                   HFDPRRRGCAEGGARVSEVLCRLETGRTHQIRVHLASLGHPLLADTLYGGKPLAGATRQ
FT                   MLHARALHFDDPGGAGEVSFEAGVPADMSDVQEALAWNA"
FT   misc_feature    169778..169918
FT                   /note="HMMPfam hit to PF01479, S4 domain"
FT   misc_feature    170000..170473
FT                   /note="HMMPfam hit to PF00849, RNA pseudouridylate
FT                   synthase"
FT   misc_feature    170129..170173
FT                   /note="ScanRegExp hit to PS01129, Rlu family of
FT                   pseudouridine synthase signature. Confirmed by InterPro
FT                   eMOTIF pattern match."
FT   CDS             170701..171402
FT                   /transl_table=11
FT                   /locus_tag="BP1148"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein Pa4543 SW:Y9E3_PSEAE (P33663) (242 aa) fasta
FT                   scores: E(): 9.1e-33, 49.78% id in 229 aa, and to
FT                   Escherichia coli hypothetical protein YfiH or B2593
FT                   SW:YFIH_ECOLI (P33644) (243 aa) fasta scores: E(): 1.4e-31,
FT                   47.61% id in 231 aa"
FT                   /db_xref="InterPro:IPR003730"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ01"
FT                   /protein_id="CAE41445.1"
FT                   /translation="MNYFCTTRAGGAGVAPHDTLNLGLRAGDRPETVAENRRRVRAAVP
FT                   AEPLWLRQVHGHEVVDADAGPPHEPAADASVTAAPGRVLAIMVADCLPVVIADQDGTVL
FT                   GAAHAGWRGLAGGVLENTLRAMQAKVPDARGWRAWIGPGIGPAAFEVGADVLQAFAADG
FT                   PEAAALFAPRPGLPGKWLADLPGLALLRLRRAGVQAQSCGLCTVQDSRFFSYRRDRETG
FT                   RMALLAWLDAR"
FT   misc_feature    170743..171393
FT                   /note="HMMPfam hit to PF02578, Uncharacterized ACR, YfiH
FT                   family COG1496"
FT   CDS             171510..173147
FT                   /transl_table=11
FT                   /gene="phbC"
FT                   /locus_tag="BP1149"
FT                   /product="poly-beta-hydroxybutyrate polymerase"
FT                   /EC_number="2.3.1.-"
FT                   /note="Similar to Alcaligenes eutrophus
FT                   poly-beta-hydroxybutyrate polymerase PhbC SW:PHBC_ALCEU
FT                   (P23608) (589 aa) fasta scores: E(): 8.2e-129, 58.96% id in
FT                   541 aa, and to Burkholderia SpDSMZ 9242. phac TR:Q9RB82
FT                   (EMBL:AF153086) (625 aa) fasta scores: E(): 1.6e-124,
FT                   55.78% id in 545 aa"
FT                   /db_xref="GOA:Q7VZ00"
FT                   /db_xref="InterPro:IPR017964"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VZ00"
FT                   /protein_id="CAE41446.1"
FT                   /translation="MNAHLSAAWPVPVSVAPDALAEIQADFSREWLRLCDEAKRGVLGA
FT                   PADKRFAGAAWLDDRQRLLMAHAYLLSARAMARLVEAAQVSEPMRNRLRFSVMQWVDAM
FT                   SPANFLAFNPDAQRAIVESAGRTLQEGMANLLNDIQRGRISQTDETQFEIGRNVATTPG
FT                   HVVFENSLMQLIQYAPQTAKVCERPLVIVPPNINKYYILDLQPENSFVRYAVEQGHTVF
FT                   IISWRNPLAADTDGVDTATWSEYLDDAVLKALAVASDISGQPQVNALGFCVGGTMLASA
FT                   LALAQVRGERPVASLTLLTSLLDFHDTGILKVFVDEAHALLRDHQYGQRGLMPARDLAT
FT                   TFSFLRPNELVWNYVVSNYLKGKTPPAFDLLFWNADSTNLPGPFFAWYFRNTYLENNLK
FT                   VPGRARVAGVPLDLTRLDMPTYLYGSREDHIVPWPSAYASTQLLRGPMRFVLGASGHIA
FT                   GVINPPAKQRRSYWVNESAGAVSHDLPGDPNAWLAGAVEHAGSWWPDWTSWLAGHGGKQ
FT                   VAAPAQAGNKRFRPIEPAPGRYVKVRAV"
FT   misc_feature    172164..172928
FT                   /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold"
FT   misc_feature    172200..172226
FT                   /note="ScanRegExp hit to PS00116, DNA polymerase family B
FT                   signature."
FT   CDS             173215..173952
FT                   /transl_table=11
FT                   /gene="phbB"
FT                   /locus_tag="BP1150"
FT                   /product="acetoacetyl-CoA reductase"
FT                   /EC_number="1.1.1.36"
FT                   /note="Similar to Alcaligenes eutrophus acetoacetyl-CoA
FT                   reductase PhbB SW:PHBB_ALCEU (P14697) (246 aa) fasta
FT                   scores: E(): 1.6e-71, 76.82% id in 246 aa, and to
FT                   Escherichia coli 3-oxoacyl-[acyl-carrier protein] reductase
FT                   FabG or B1093 SW:FABG_ECOLI (P25716) (244 aa) fasta scores:
FT                   E(): 2.5e-34, 45.67% id in 243 aa"
FT                   /db_xref="GOA:Q7VYZ9"
FT                   /db_xref="HSSP:1Q7B"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYZ9"
FT                   /protein_id="CAE41447.1"
FT                   /translation="MSGKLAYVTGGMGGIGTAICQRLAKDGFRVVAGCGPSRNYQQWLD
FT                   EQAAQGYTFYASVGNVSDWESTVKAFERVTADLGQVDVLVNNAGITRDGLFRKMSVDDW
FT                   RAVIDTNLNSLFNVTKQVLDGMVERQWGRIVNISSVNGQKGQFGQTNYSTAKAGIHGFT
FT                   MALAQEVASKGITVNTISPGYIGTDMVRAIRPDVLEKIVATIPVRRLGTPEEIASMTSW
FT                   LASDESGFATGADFSLNGGLHMG"
FT   misc_feature    173224..173778
FT                   /note="HMMPfam hit to PF00106, short chain dehydrogenase"
FT   misc_feature    173629..173715
FT                   /note="ScanRegExp hit to PS00061, Short-chain
FT                   dehydrogenases/reductases family signature. Confirmed by
FT                   InterPro eMOTIF pattern match."
FT   misc_feature    173836..173928
FT                   /note="HMMPfam hit to PF00678,"
FT   CDS             174055..174630
FT                   /transl_table=11
FT                   /locus_tag="BP1151"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Alcaligenes eutrophus hypothetical 21.0
FT                   kDa protein TR:O68272 (EMBL:AF026544) (183 aa) fasta
FT                   scores: E(): 2.8e-48, 73.48% id in 181 aa, and to
FT                   Burkholderia spDSMZ 9242. hypothetical 21.8 kDa protein
FT                   TR:Q9RB79 (EMBL:AF153086) (188 aa) fasta scores: E():
FT                   2.1e-47, 71.5% id in 179 aa"
FT                   /db_xref="InterPro:IPR007897"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYZ8"
FT                   /protein_id="CAE41448.1"
FT                   /translation="MTQAQTGAALRLIKKYPNRRLYDTQTSTYITLADVKQLVLANENF
FT                   QVVDAKSGEDLTRSILLQIILEEESGGMPMFSSNMLAQIIRFYGHAMQGIMGSYLEKNI
FT                   QAFMEIQQRMAEQSKGLYGSQFGPEAWTQFMNVQTPMLQKMMNNYIDQSKNLFVQMQDQ
FT                   MQDQTRAMFSNFPFTPPGGDGPQGGRGK"
FT   CDS             174803..175339
FT                   /transl_table=11
FT                   /locus_tag="BP1152"
FT                   /product="putative exported protein"
FT                   /note="Similar to Pasteurella multocida hypothetical
FT                   protein Pm0452 TR:Q9CNH9 (EMBL:AE006081) (173 aa) fasta
FT                   scores: E(): 3.9e-34, 55.74% id in 174 aa, and to
FT                   Campylobacter jejuni periplasmic protein P19 or Cj1659
FT                   TR:Q9PM18 (EMBL:AL139079) (179 aa) fasta scores: E():
FT                   1.2e-32, 51.09% id in 182 aa"
FT                   /db_xref="InterPro:IPR018470"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYZ7"
FT                   /protein_id="CAE41449.1"
FT                   /translation="MMKKALLLALALSLPGAAFAAEYPIGKPAEKGGMEIGAVYLQPIE
FT                   MDPPGMMRAAKDSDVHLEADIHATAGNATGFPEGEWVPYLVVKYEVQKVGSDKVQKGTF
FT                   MPMVANDGPHYGDNVKLDGPGKYKLKYTIMPPTADKMNHFGRHIDKETGVGPWFEPFDL
FT                   EYEFVFAGTGKKGGY"
FT   misc_feature    174803..174862
FT                   /note="Signal peptide predicted for BP1152 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 1.000 between residues 20 and 21"
FT   CDS             175342..175686
FT                   /transl_table=11
FT                   /locus_tag="BP1153"
FT                   /product="putative exported protein"
FT                   /note="Similar to Prochlorothrix hollandica plastocyanin
FT                   precursor PetE SW:PLAS_PROHO (P50057) (131 aa) fasta
FT                   scores: E(): 2.7, 27.2% id in 125 aa, and to Rickettsia
FT                   prowazekii hypothetical protein Rp394 SW:Y394_RICPR
FT                   (Q9ZDD7) (125 aa) fasta scores: E(): 0.00021, 39.74% id in
FT                   78 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYZ6"
FT                   /protein_id="CAE41450.1"
FT                   /translation="MRAPAAALLAMALGLGAPLAARAADLPTFTLTFQPDGTFEPARLE
FT                   VPAGRFKIELINASNEPVEFESIPLRKEKVLGPGVKSFVVITISRPGEYPFFDDFHQDV
FT                   KGTLVVKPKD"
FT   misc_feature    175342..175410
FT                   /note="Signal peptide predicted for BP1153 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.996 between residues 23 and 24"
FT   CDS             175702..176547
FT                   /transl_table=11
FT                   /locus_tag="BP1154"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Neisseria meningitidis hypothetical
FT                   protein Nmb0034 TR:Q9K1P7 (EMBL:AE002362) (279 aa) fasta
FT                   scores: E(): 2.1e-20, 31.59% id in 269 aa, and to
FT                   Streptomyces coelicolor putative membrane protein Scc75a.23
FT                   TR:Q9RKQ1 (EMBL:AL133220) (290 aa) fasta scores: E():
FT                   3.3e-18, 34.4% id in 250 aa"
FT                   /db_xref="GOA:Q7VYZ5"
FT                   /db_xref="InterPro:IPR004923"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYZ5"
FT                   /protein_id="CAE41451.1"
FT                   /translation="MEQVLFIVWRESVEALLVVGILYAWLRATPAGRRGMPYLWGGVAA
FT                   GLALALLLALVLLGVSSWLSDEGQEWFQAGMSLVACALVVQMVIWMKRHGRTLKRELEG
FT                   GARASIERDNWWGLLVLVMIAVAREGSETVVFLYGTVAAAAGQAGDAALLVLAGAAGFL
FT                   IALLTFWLLQLGGKLITWRRFFRVTEILLLLLAGALLVGGLDHLISLDVLPTLIDPVWD
FT                   SSWLLDDSSGMGKVLADFAGYRAYPALISVLLWLAYWLVVWLLLRRADGAAAISARSAA
FT                   "
FT   misc_feature    join(175711..175779,175816..175884,175912..175971,
FT                   176044..176112,176155..176223,176260..176328,
FT                   176431..176499)
FT                   /note="7 probable transmembrane helices predicted for
FT                   BP1154 by TMHMM2.0 at aa 4-26, 39-61, 71-90, 115-137,
FT                   152-174, 187-209 and 244-266"
FT   CDS             176586..177965
FT                   /transl_table=11
FT                   /locus_tag="BP1155"
FT                   /product="putative regulatory protein"
FT                   /note="Similar to Synechocystis sp nitrogen assimilation
FT                   regulatory protein Slr1529 TR:P74210 (EMBL:D90913) (835 aa)
FT                   fasta scores: E(): 1.5e-09, 26.03% id in 434 aa, and to
FT                   Achromobacter cycloclastes regulatory protein NosR
FT                   TR:O68476 (EMBL:AF047429) (731 aa) fasta scores: E(): 0.05,
FT                   24.9% id in 261 aa, and to Rhizobium meliloti regulatory
FT                   protein NosR TR:O68483 (EMBL:AF047430) (755 aa) fasta
FT                   scores: E(): 1.4, 24.9% id in 249 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYZ4"
FT                   /protein_id="CAE41452.1"
FT                   /translation="MASVLGRATARFADVLRDHAPLLRKLQWGIVAAYAFLLIVPVFLP
FT                   LPDNAASVFDNLTVLAQFAFWGVWWPFVLVSMPLLGRAWCGWFCPEGMLTEWASERGQG
FT                   RAIPRWMRWGGWPFVAFALTTIYGQLVSVYQYPLAALAVLGGSTVAAMIVGWRYGRSKR
FT                   VWCKYLCPVNGVFNLLAKLAPWHFKVDEEKWRHPVIRVEAINCAPLVPLRHMKGAGDCH
FT                   VCGRCSGYRGAIALAPRSPETEIVEVADGDGWQTALICFGLMGVAVGAFLWSASPWYVT
FT                   IKQWAAAWLVEHDIIWPLLDNAPWFVLTHYPDVNDSFSWLDGAGILLFVAGATLAVGLP
FT                   AFAALWLADRVAPLAARAGRLAGVHKLAQGLIPCAGIGVFLGLSATTLTLLRHEGVGTG
FT                   WANPVRFTLLALAVLWSLRLVWRLLARRPAGLARRGLAWLAAAAGLAPFCLSWVLFFAI
FT                   W"
FT   misc_feature    join(176646..176714,176757..176825,176922..176978,
FT                   176991..177059,177357..177425,177561..177629,
FT                   177690..177758,177801..177857,177891..177959)
FT                   /note="9 probable transmembrane helices predicted for
FT                   BP1155 by TMHMM2.0 at aa 21-43, 58-80, 113-131, 136-158,
FT                   258-280, 326-348, 369-391, 406-424 and 436-458"
FT   misc_feature    177885..177950
FT                   /note="Predicted helix-turn-helix motif with score 1057
FT                   (+2.79 SD) at aa 434-455, sequence RGLAWLAAAAGLAPFCLSWVLF"
FT   CDS             178043..178924
FT                   /transl_table=11
FT                   /locus_tag="BP1156"
FT                   /product="conserved hypotheticals protein"
FT                   /note="Similar to Pseudomonas aeruginosa
FT                   phenazine/pyocyanine biosynthesis protein PhzF
FT                   SW:PHZF_PSEAE (O69754) (278 aa) fasta scores: E(): 2.7e-08,
FT                   31.43% id in 299 aa, and to Erwinia chrysanthemi putative
FT                   antibiotic biosynthesis protein Pab TR:CAC59746
FT                   (EMBL:AJ310612) (293 aa) fasta scores: E(): 1.5e-17, 36.42%
FT                   id in 302 aa"
FT                   /db_xref="GOA:Q7VYZ3"
FT                   /db_xref="InterPro:IPR003719"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYZ3"
FT                   /protein_id="CAE41453.1"
FT                   /translation="MTSYAFRLLNVFAESCFGGNPLCVFEDARGLRDEEMQALALQFNL
FT                   SETTFILPGGEGADAQVRVFTPDAEMRFAGHPALGTARVVSELLGLGASVRLGFKAGVV
FT                   PVREHDGAWTFTAPSSGMPRTARAALAAGEIAGLLGLDPADLHDEPLWVDTGSDQLLVP
FT                   LKTPEAVMRAAPHAAWPARWPANSLGRKTAYVFAFGPQTGAGARRIVQSRYFHARAGGG
FT                   VAEDPGTGSACANLGGWLLARGAPLPAHILVEQGDLVRRPCRLRLDVDDAGAIQVGGGV
FT                   IEIGRGEIRLPR"
FT   misc_feature    178046..178912
FT                   /note="HMMPfam hit to PF02567, Phenazine biosynthesis-like
FT                   protein"
FT   repeat_region   178921..178952
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   178921..179973
FT   CDS             179023..179973
FT                   /transl_table=11
FT                   /locus_tag="BP1157"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TT97"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TT97"
FT                   /protein_id="CAE41454.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHT"
FT   misc_feature    179281..179346
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   misc_feature    179404..179937
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   repeat_region   complement(179946..179973)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(179970..180380)
FT                   /transl_table=11
FT                   /locus_tag="BP1158"
FT                   /product="putative dioxygenase"
FT                   /note="Similar to Agrobacterium tumefaciens Agr_l_1189p
FT                   TR:AAK89172 (EMBL:AE008257) (134 aa) fasta scores: E():
FT                   1.3e-30, 65.89% id in 129 aa, and to Pseudomonas aeruginosa
FT                   hypothetical protein Pa3956 TR:Q9HX60 (EMBL:AE004813) (144
FT                   aa) fasta scores: E(): 4.3e-15, 45.9% id in 122 aa"
FT                   /db_xref="GOA:Q7VYZ2"
FT                   /db_xref="InterPro:IPR004360"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYZ2"
FT                   /protein_id="CAE41455.1"
FT                   /translation="MFSHVTVGVSDLARAGRFYDALLQPLGLRQRQTQPDGGPPSLCWV
FT                   RAGTSLPRFFAYMPFNGRPPSPGNGAMVAFLAETSEQVDQAHAAGLAAGGSDEGAPGPR
FT                   ARYGPGYYGAYLRDPDGNKLHVVHRSGPAAAG"
FT   misc_feature    complement(179994..180359)
FT                   /note="HMMPfam hit to PF00903, Glyoxalase/Bleomycin
FT                   resistance protein/Dioxygenase superfamily"
FT   CDS             complement(180488..181342)
FT                   /transl_table=11
FT                   /locus_tag="BP1159"
FT                   /product="putative 2-pyrone-4,6-dicarboxylic acid
FT                   hydrolase"
FT                   /note="Similar to Pseudomonas paucimobilis
FT                   2-pyrone-4,6-dicarboxylic acid hydrolase LigI TR:O87170
FT                   (EMBL:AB015964) (293 aa) fasta scores: E(): 6.8e-17, 30.76%
FT                   id in 273 aa, and to Sphingomonas spLB126 FldB protein
FT                   TR:Q9L399 (EMBL:AJ277295) (295 aa) fasta scores: E():
FT                   4.1e-19, 32.24% id in 276 aa"
FT                   /db_xref="GOA:Q7VYZ1"
FT                   /db_xref="InterPro:IPR006992"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYZ1"
FT                   /protein_id="CAE41456.1"
FT                   /translation="MVERARLAEGGGWDCHFHVFDASRYTLAAGSAYQPEDASLAAFRG
FT                   VCRARGIGRAVLVHPSVYGADHSSYEDALAANGDWLRGVAVVYPDEATTPDARIEHWDL
FT                   LGTAGTRINRLFPGAPQHPERIVERVKPFGWHVQVLTDIVEDIGLVRRIAARDVPVVVD
FT                   HFGHHPHAQLLRSAGWQDLIALVREGAAWVKLSAPYRVGAQGPAWPGAQALVDQLVQAN
FT                   PRQLVWGSDWPHPPDHRHPFPAPDQAAIGATIAQWLPDAQLRRQVMELNPLRLYGGTRA
FT                   AGR"
FT   CDS             complement(181335..182297)
FT                   /transl_table=11
FT                   /locus_tag="BP1160"
FT                   /product="putative lipoprotein"
FT                   /note="Similar to Burkholderia cepacia hypothetical 35.5
FT                   kDa protein TR:AAK81675 (EMBL:AF029344) (337 aa) fasta
FT                   scores: E(): 3.1e-31, 37.1% id in 318 aa, and to Variovorax
FT                   paradoxus 2,4-diphenoxyacetic acid gene cluster TR:Q9RHQ7
FT                   (EMBL:AB028643) (337 aa) fasta scores: E(): 3.1e-31, 37.1%
FT                   id in 318 aa"
FT                   /db_xref="GOA:Q7VYZ0"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYZ0"
FT                   /protein_id="CAE41457.1"
FT                   /translation="MMKLRAACALAAALACGAVLAQDLGGKPLTLVVPFAPGGNADIVA
FT                   RSYAVPMARLIGATVVVDNRGGGGGAIGTAIVAKAPADGSTLLSATPGQLGTLPHMFKT
FT                   GYKSADFVPVGVVSKTSIALVVKHDDARFKTTEEFIAYARRNPGKLNVGHAGPGSPNHL
FT                   AMLQFENATGTRFTPIAYKGSGPALIDLLSGQIDVIFDQVSSSLPHLKAGKLSALLILG
FT                   PTRDPSIGQVRTLKEAGLPEFDASTYIGVLAPKGVPAETVAKLTSVIRQVADDPAFDSK
FT                   LREIGSGAFYADPADFARILQADEDLAKAMIQQGRLIDG"
FT   misc_feature    complement(182235..182297)
FT                   /note="Signal peptide predicted for BP1160 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 1.000 between residues 21 and 22"
FT   misc_feature    complement(182250..182282)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             complement(182343..183467)
FT                   /transl_table=11
FT                   /locus_tag="BP1161"
FT                   /product="putative racemase"
FT                   /note="Similar to Rhizobium loti Mlr3365 protein TR:Q98GE6
FT                   (EMBL:AP003001) (389 aa) fasta scores: E(): 5.1e-26, 31.16%
FT                   id in 385 aa, and to Streptomyces coelicolor putative
FT                   isomerase Sce65.11C TR:Q9RKG2 (EMBL:AL133236) (377 aa)
FT                   fasta scores: E(): 3.7e-24, 32.04% id in 362 aa"
FT                   /db_xref="GOA:Q7VYY9"
FT                   /db_xref="InterPro:IPR013342"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYY9"
FT                   /protein_id="CAE41458.1"
FT                   /translation="MAIIKSIEVCVARVPMDKVTYLSNRTVVDRHYGLVKVRSADGVEG
FT                   IGFCYVGNQAGEIFRVAVEQLLGPVLIGRDSLAVEGLWREMYQEALLQGRMGMVMRALS
FT                   ALDIALWDLNARAANLPLHKYLGAVELDSVAAYASGGYYVEGKTAGQLGEEMASYVELG
FT                   FKAVKMKTGRWSPQGEESRVRAAREAIGEDVELMLDCNNGWVDTVQAMEYLRRMEPYNP
FT                   YFIEEPFSPDDVESHARLARLTRIPVATAEIGYGRWYHKQLLDMGAAAILQTDAAVCGG
FT                   ITEWKRIAAMAAGYGIQMCPHWFHDVHAPLAAATPNARYVEFFWDDQVLNFRRLVDRQL
FT                   EHKDGRVILHQTPGLGFGFDENAVARYGRWTTVS"
FT   misc_feature    complement(182421..183452)
FT                   /note="HMMPfam hit to PF01188, Mandelate racemase /
FT                   muconate lactonizing enzyme, C-terminal domain"
FT   misc_feature    complement(183024..183047)
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   misc_feature    complement(183210..183251)
FT                   /note="ScanRegExp hit to PS00213, Lipocalin signature."
FT   CDS             183579..184451
FT                   /transl_table=11
FT                   /locus_tag="BP1162"
FT                   /product="probable LysR-family transcriptional regulator"
FT                   /note="Similar to the previously sequenced Bordetella
FT                   pertussis Brg1 TR:O30441 (EMBL:AF006000) (291 aa) fasta
FT                   scores: E(): 3.4e-23, 34.02% id in 288 aa, and to
FT                   Pseudomonas aeruginosa probable transcriptional regulator
FT                   Pa0816 TR:Q9I5C3 (EMBL:AE004516) (294 aa) fasta scores:
FT                   E(): 3e-23, 33.9% id in 289 aa"
FT                   /db_xref="GOA:Q7VYY8"
FT                   /db_xref="HSSP:1IXC"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYY8"
FT                   /protein_id="CAE41459.1"
FT                   /translation="MRFLHSFVTVAESGSIADAARRLGLAPTTVAQQIRALEADLGSRL
FT                   LTRAGRTVRPTVAGARIVDRARELLRGERDLRSAASDTGLPAGPMRLGATPTALMGLVP
FT                   PLLRRWMRAHPDIQIYIEPGTSSVLLERVMAGQLDAAILVHPNFELHKTCAWSLIREER
FT                   LVLLAPSALRVGNALRVAAREPFIQYDRKVVAGKMADEYLRAHGVRPKVQFELDGIEHI
FT                   SALVAEGFGVSVLPDWPTLGPADARVRRWPLPDPCPSRQVGMVWLRSSVRSPLAQAFHA
FT                   YLGAAAGAP"
FT   misc_feature    183579..184004
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family"
FT   misc_feature    183618..183683
FT                   /note="Predicted helix-turn-helix motif with score 1838
FT                   (+5.45 SD) at aa 18-39, sequence GSIADAARRLGLAPTTVAQQIR"
FT   misc_feature    183621..183713
FT                   /note="ScanRegExp hit to PS00044, Bacterial regulatory
FT                   proteins, lysR family signature."
FT   CDS             184576..185355
FT                   /transl_table=11
FT                   /locus_tag="BP1163"
FT                   /product="probable short-chain dehydrogenase"
FT                   /note="Similar to Picea abies short-chain type
FT                   dehydrogenase/reductase SW:SDR1_PICAB (Q08632) (271 aa)
FT                   fasta scores: E(): 1.4e-22, 38.37% id in 258 aa, and to
FT                   Streptomyces coelicolor reductase Stah10.29 TR:Q9RKS8
FT                   (EMBL:AL132824) (262 aa) fasta scores: E(): 5e-40, 54.43%
FT                   id in 248 aa"
FT                   /db_xref="GOA:Q7VYY7"
FT                   /db_xref="HSSP:1Q7B"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYY7"
FT                   /protein_id="CAE41460.1"
FT                   /translation="MNQVATQSSLAGRTALVTGASRGIGRAIALALGRRGATVAVHYNA
FT                   AREQADEVVQAIGAAGGRAWALRADLAHPDGAGALARDLRASLREQTGDEGLDILVNNA
FT                   GVSLRARLPEVSPQDFDRIIQVNLKTPFFLIQHLLPLLRDAGRIVNVSSMGTRAAYPEM
FT                   SVYAPAKAGLEALTLLLASDLGARGITVNAVLPGATATDMNTRARDPAMADALARDIAL
FT                   GRVGQPEDIADIVAFLASDQARWITGQRLDATGGQRL"
FT   misc_feature    184612..185181
FT                   /note="HMMPfam hit to PF00106, short chain dehydrogenase"
FT   misc_feature    185242..185334
FT                   /note="HMMPfam hit to PF00678,"
FT   CDS             185509..186930
FT                   /transl_table=11
FT                   /locus_tag="BP1164"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Zymomonas mobilis tetracenomycin C
FT                   resistance and export protein YjcC TR:Q9X3X9
FT                   (EMBL:AF088896) (487 aa) fasta scores: E(): 6.8e-48, 45.64%
FT                   id in 436 aa, and to Escherichia coli hypothetical
FT                   transport protein YebQ or B1828 SW:YEBQ_ECOLI (P76269) (457
FT                   aa) fasta scores: E(): 6.9e-46, 45.59% id in 443 aa"
FT                   /db_xref="GOA:Q7VYY6"
FT                   /db_xref="InterPro:IPR011701"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYY6"
FT                   /protein_id="CAE41461.1"
FT                   /translation="MPPSRHLPPITALLSFRLNQLAQAGAGLPHPTRAIAVAAILINVF
FT                   MATLESAIANTALPAIAADLGVSEASSIWVISAYHLAMVAALLPIASLGEIIGHRRISM
FT                   AGLVLFTLASLACGLAPSLPWLIAGRLAQGVGAAGILGVALAMTRFVYPREQLGRGLGL
FT                   NALVVSLSLAAGPTAASLILSLGSWHWLFLINVPLGLLGLALGVCALPPTPRSARRYDA
FT                   VAGLLCALFLALLVYTLNAYAHDVGAGGNTAYALATLAMLALLLRRQSGRGAPMLATDL
FT                   LRRPIFALSAAATLGAFAAQTLAFVALPFMLQSLLGYTQVQTGFLITPWPALSDRHPPG
FT                   LLGGIGMAVLAAGLLSLVALPAAPDAFDLGWRMALCGAGFGFFQAPNMRAMLADAPPER
FT                   SGGASGMTSSSIMLGQSLGAALVAGLFTLRGAAAAPAALWLGAAFAVIAGIASLLRLRH
FT                   AAAAGAGARLDLTRV"
FT   misc_feature    185509..185580
FT                   /note="Signal peptide predicted for BP1164 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.798) with cleavage site
FT                   probability 0.491 between residues 24 and 25"
FT   misc_feature    join(185623..185691,185734..185802,185821..185889,
FT                   185899..185967,185986..186054,186067..186135,
FT                   186172..186240,186253..186306,186364..186432,
FT                   186526..186594,186613..186666,186802..186870)
FT                   /note="12 probable transmembrane helices predicted for
FT                   BP1164 by TMHMM2.0 at aa 39-61, 76-98, 105-127, 131-153,
FT                   160-182, 187-209, 222-244, 249-266, 286-308, 340-362,
FT                   369-386 and 432-454"
FT   CDS             187365..189062
FT                   /transl_table=11
FT                   /locus_tag="BP1165"
FT                   /product="sodium/solute symporter"
FT                   /note="Similar to Escherichia coli sodium/pantothenate
FT                   symporter PanF or B3258 SW:PANF_ECOLI (P16256) (483 aa)
FT                   fasta scores: E(): 7.4e-16, 25.22% id in 448 aa, and to
FT                   Haemophilus influenzae sodium/pantothenate symporter PanF
FT                   or Hi0975 SW:PANF_HAEIN (P44963) (484 aa) fasta scores:
FT                   E(): 8.4e-14, 22.05% id in 467 aa"
FT                   /db_xref="GOA:Q7VYY5"
FT                   /db_xref="InterPro:IPR001734"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYY5"
FT                   /protein_id="CAE41462.1"
FT                   /translation="MQESEFFQLSGTTAVLLLVAFYGATFLMSLMIGQKKENVDGYMVS
FT                   NSSVGFGLSAASMIATWIWAASFYASATSGFKYGLSGPIQYGFWGALMILFIYPFGKRF
FT                   RQLAPKAHTLAEVIHARHGASSQMIMAVSNIVGSCISLMVNFTAAGALVSVLSPLSFIQ
FT                   GVLIAGLGVLSYTLWSGFRASVMTDFAQLVAMILAAVIIIPLIFFNAGGPDMLQANMWR
FT                   LSSEQADFFSTTAILEQGAPYFVAVLAYAIGNQTIAQRLFAVREDLIKPTFLTATIGYG
FT                   AVVIGLDMLGLLALFVGLEPVNGNMNNIIPQMASTYLPPVGIALFFILVVGSLSSTADS
FT                   DLAALSAIVITDIYAKNLAGGRPDPRRMLWWGRATMIVATMVGVIFASLRLDILVMLVF
FT                   VGALWGAIVFPVIASFYWDRVSNSAFFWSVISAVVLFTIVRFELVPIEGAVAVFYEICA
FT                   AIGGGVVIGLMSFAFFGRVTALTLGTLATLILLPCFVGTLREYIVLLGSLTAYGVSTVV
FT                   CVALSLRNQERFDFSLLAERVTSFHYEKARMMGAKPAAPAAQPQPARG"
FT   misc_feature    join(187395..187463,187500..187568,187596..187664,
FT                   187755..187823,187839..187907,187926..187994,
FT                   188052..188120,188178..188246,188289..188357,
FT                   188469..188537,188547..188615,188634..188702,
FT                   188712..188780,188799..188852,188865..188933)
FT                   /note="15 probable transmembrane helices predicted for
FT                   BP1165 by TMHMM2.0 at aa 43-65, 78-100, 110-132, 163-185,
FT                   191-213, 220-242, 262-284, 304-326, 341-363, 401-423,
FT                   427-449, 456-478, 482-504, 511-528 and 533-555"
FT   misc_feature    187488..188660
FT                   /note="HMMPfam hit to PF00474, Sodium:solute symporter
FT                   family"
FT   CDS             189091..189213
FT                   /transl_table=11
FT                   /locus_tag="BP1165A"
FT                   /product="putative membrane protein"
FT                   /note="no significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYY4"
FT                   /protein_id="CAE41463.1"
FT                   /translation="MLLTLYFLAWPVVSAAVLLVLIVTLWRDIRDARATGKSMI"
FT   misc_feature    189100..189168
FT                   /note="1 probable transmembrane helix predicted for BP1165A
FT                   by TMHMM2.0 at aa 4-26"
FT   CDS             complement(189289..190230)
FT                   /transl_table=11
FT                   /gene="ldcA"
FT                   /locus_tag="BP1166"
FT                   /product="putative muramoyltetrapeptide carboxypeptidase"
FT                   /EC_number="3.4.17.13"
FT                   /note="Similar to Escherichia coli muramoyltetrapeptide
FT                   carboxypeptidase LdcA or B1192 SW:LDCA_ECOLI (P76008) (304
FT                   aa) fasta scores: E(): 1.3e-16, 32.83% id in 265 aa, and to
FT                   Streptomyces coelicolor hypothetical protein Sc9c7.25
FT                   SW:YC25_STRCO (Q9ZBI5) (310 aa) fasta scores: E(): 7.3e-24,
FT                   40.62% id in 320 aa"
FT                   /db_xref="GOA:Q7VYY3"
FT                   /db_xref="InterPro:IPR003507"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYY3"
FT                   /protein_id="CAE41464.1"
FT                   /translation="MPALRAGARITIVAPASAIAGAADEAAEWLLERGYEPQVMPAARA
FT                   RLAPPFDYLAGDDAARLADLHAAFADPAVGAVWCLQGGFGSWRVLDQIDYGLLRRHAKP
FT                   FIGYSDVTALHLAIQRYAGFVTFHGPMLAQDLLAGRQAPTEQALLDMVSGRLGAGSWIA
FT                   APPQARLATLASGVATGRLIGGNLALLAALTGTRYAIDARDGILFFEDVNEALPRVDRM
FT                   LAQLRRAGAFDGVRGVLVGSFTRLLGVPGDGEAAQAALYPLVREHFQARGIPVLAGWPS
FT                   GHGDPNLTLPLGARVTLDAGRGALRLEQPVAV"
FT   misc_feature    complement(189307..189714)
FT                   /note="HMMPfam hit to PF02016, Uncharacterized protein
FT                   family UPF0094"
FT   misc_feature    complement(189832..189996)
FT                   /note="HMMPfam hit to PF02016, Uncharacterized protein
FT                   family UPF0094"
FT   misc_feature    complement(190165..190230)
FT                   /note="Signal peptide predicted for BP1166 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.946) with cleavage site
FT                   probability 0.636 between residues 22 and 23"
FT   CDS             190557..191303
FT                   /transl_table=11
FT                   /locus_tag="BP1167"
FT                   /product="putative adolase"
FT                   /note="Similar to Rhizobium meliloti putative
FT                   adolase/adducin sma1976 TR:AAK65743 (EMBL:AE007294) (249
FT                   aa) fasta scores: E(): 3.9e-36, 48.01% id in 227 aa, and to
FT                   Pseudomonas aeruginosa hypothetical aldolase class ii
FT                   protein Pa3430 SW:YY30_PSEAE (Q9HYH5) (259 aa) fasta
FT                   scores: E(): 6.5e-19, 34.48% id in 232 aa"
FT                   /db_xref="GOA:Q7VYY2"
FT                   /db_xref="InterPro:IPR001303"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYY2"
FT                   /protein_id="CAE41465.1"
FT                   /translation="MPPSAPTDSARSLYQDTAVAALRDDLALALCAAAHHGLGEGVCNH
FT                   FSVALPGQAGAFLLNPRGLMWSEVRAEDIVLVDAAGNKLAGRHEVEPTAMFIHAAIHQV
FT                   AGKACVLHTHMPYATALTLTEARMLDTTLSQNAMRFHGRVAADRRYNGLALDAAEGERI
FT                   ARAMDGADIAFLGNHGVVVCGERIDYAFDDLYYLERACCAQVLAESSGRPLVPLDAALA
FT                   ASVAGQARSERLQSTLFFEALRRALG"
FT   misc_feature    190572..190601
FT                   /note="ScanRegExp hit to PS00215, Mitochondrial energy
FT                   transfer proteins signature."
FT   misc_feature    190614..191261
FT                   /note="HMMPfam hit to PF00596, Class II Aldolase and
FT                   Adducin N-terminal domain."
FT   CDS             complement(191311..192216)
FT                   /transl_table=11
FT                   /locus_tag="BP1168"
FT                   /product="LysR-family transcriptional regulator"
FT                   /note="Similar to Escherichia coli transcriptional
FT                   activator protein LysR or B2839 SW:LYSR_ECOLI (P03030) (311
FT                   aa) fasta scores: E(): 3.4e-21, 32.36% id in 275 aa, and to
FT                   Pseudomonas aeruginosa probable transcriptional regulator
FT                   Pa5085 TR:Q9HU98 (EMBL:AE004921) (318 aa) fasta scores:
FT                   E(): 7.8e-27, 34% id in 300 aa"
FT                   /db_xref="GOA:Q7VYY1"
FT                   /db_xref="InterPro:IPR005119"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYY1"
FT                   /protein_id="CAE41466.1"
FT                   /translation="MRFKLRQMEAFRAVMLTGSMNGVARLLFVSQPAVSRLIAHAEQSL
FT                   GLRLFERDKGKLTPTAEAQRLFEEVGQLFDEALRIDELARDLAERPEGELKLCSSPSLA
FT                   LNFLPPVIARYVNEHPRVRLKYHTTLLSDMAHELLGRKVELAVSVLPIDNPNLVVEPFA
FT                   TGHMVCILPQGHALARQDSVGLAELARNRLVLYSRNIPFGQLVAAAFQRANVPWRATVD
FT                   IVRAELACALVRSGVGVAIVDEFSVAGGGWPGIEVRPLREPIPLALSLVRSRFERPGRQ
FT                   AQRFVKLLKEQAQRRAAAVQ"
FT   misc_feature    complement(191776..192204)
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family"
FT   misc_feature    complement(192100..192165)
FT                   /note="Predicted helix-turn-helix motif with score 1503
FT                   (+4.31 SD) at aa 25-46, sequence GSMNGVARLLFVSQPAVSRLIA"
FT   CDS             192359..193276
FT                   /transl_table=11
FT                   /locus_tag="BP1169"
FT                   /product="putative oxidoreductase"
FT                   /note="Similar to Escherichia coli
FT                   2-hydroxy-3-oxopropionate reductase GarR or B3125
FT                   SW:GARR_ECOLI (P23523) (294 aa) fasta scores: E(): 6.8e-21,
FT                   31.61% id in 291 aa, and to Homo sapiens
FT                   3-hydroxyisobutyrate dehydrogenase, mitochondrial precursor
FT                   HibadH SW:D3HI_HUMAN (P31937) (336 aa) fasta scores: E():
FT                   1.9e-21, 32% id in 300 aa"
FT                   /db_xref="GOA:Q7VYY0"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYY0"
FT                   /protein_id="CAE41467.1"
FT                   /translation="MMQTLGFVGLGMMGLPMLENLAGDERWQILAYDRSPAPFERLAGH
FT                   PAWGKRLRAAAGLQELAACDTVITMLPNSAITNAVVLGGDGQPGLIDLLESGAAIVDMG
FT                   SSNPADTRRLSEQLAARGLTLIDAPVSGAVAKASTGTLAIMAGAAEADLRRVRPILERM
FT                   GAAIIHTGAVGSAHAMKALNNYVYAAGLLAVSEAMVIARRMELDLEVFTDVLNASSGRN
FT                   VASETKLRQFIIPGTYNGGFALALMAKDLGTAQSLQALTGVQADQLALCAELWRQALAQ
FT                   LPGGADNTEIHRFLAQRTPATEPA"
FT   CDS             193316..194269
FT                   /transl_table=11
FT                   /locus_tag="BP1170"
FT                   /product="putative exported protein"
FT                   /note="Similar to Comamonas testosteroni OrfJ protein
FT                   TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E():
FT                   4.1e-36, 37.73% id in 318 aa, and to Burkholderia cepacia
FT                   hypothetical 35.5 kDa protein TR:AAK81675 (EMBL:AF029344)
FT                   (337 aa) fasta scores: E(): 1.4e-32, 35.69% id in 311 aa"
FT                   /db_xref="GOA:Q7VYX9"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYX9"
FT                   /protein_id="CAE41468.1"
FT                   /translation="MFKPLFATAALALAIGQATAAYPERPIRMVVPFPPGSITDVVARS
FT                   LGQGMAAELGQPVVVENKPGANGIIGTQDVVKAQPDGYTLVVVGVSTAASGVSLFKNLP
FT                   YDPARDLTPIGAVAETPYLLVGGQDVAGKTVADLYDYGRQHPGKLTYAYGSGSAQVFGA
FT                   KLAAMGDITVTPVPYRGGPQALTDVIGGTVDLTFTDLANGLQQARAGKVKVYGVSTPGR
FT                   FALTPDIPTLNESGAPGFDLTVWFGLMGPAGLPPAVTERLAGALDKALAAPELTQTYAR
FT                   QGLSVKTQGPAAFGAFVRSEIDKWAGIVKETGIAPQ"
FT   misc_feature    193316..193375
FT                   /note="Signal peptide predicted for BP1170 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.904 between residues 20 and 21"
FT   misc_feature    193694..193717
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   CDS             194294..194872
FT                   /transl_table=11
FT                   /locus_tag="BP1171"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Rhizobium loti Mll4877 protein TR:Q98D37
FT                   (EMBL:AP003005) (194 aa) fasta scores: E(): 1.2e-33, 49.48%
FT                   id in 194 aa, and to Eubacterium barkeri hypothetical
FT                   protein in mgm 5' region TR:Q45883 (EMBL:X77484) (123 aa)
FT                   fasta scores: E(): 5.3e-16, 44.53% id in 119 aa"
FT                   /db_xref="InterPro:IPR009569"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYX8"
FT                   /protein_id="CAE41469.1"
FT                   /translation="MSLIEIRKRTLIVETTYHENGPAPAQPLKLAASCAVIRNPYAGRY
FT                   EPDLMPFMAELRSLGTLLATELVDTLGKDNIEVYSKAAIVGVDGEMEHGAVWHEAGGWA
FT                   MRSVLGEPKAMVPAVKAVATAGYRMMVPVHYIHASYVRSHFNSIEIGIQDAPRPREILF
FT                   ALVMGTGARVHARLGGLTKEAVSVHDGQR"
FT   CDS             complement(join(194887..195321,195321..195449,
FT                   195449..196471))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP1172"
FT                   /product="putative membrane protein (Pseudogene)"
FT                   /note="Pseudogene. This CDS appears to have two frameshift
FT                   mutations, following codons 341 and 384. The sequence has
FT                   been checked and believed to be correct. Similar to
FT                   Pseudomonas aeruginosa hypothetical protein Pa1331
FT                   TR:Q9I413 (EMBL:AE004562) (515 aa) fasta scores: E():
FT                   6.6e-84, 50.86% id in 523 aa, and to Agrobacterium
FT                   tumefaciens Agr_l_1024p TR:AAK89085 (EMBL:AE008249) (518
FT                   aa) fasta scores: E(): 5e-89, 52.81% id in 515 aa"
FT                   /db_xref="PSEUDO:CAE41470.1"
FT   variation       complement(195320..195321)
FT                   /note="(C)2 pertussis; (C)3 in parapertussis and
FT                   bronchiseptica"
FT   variation       complement(195450)
FT                   /note="(C)1 in pertussis; (C)2 in parapertussis and
FT                   bronchiseptica"
FT   misc_feature    complement(join(195770..195826,195842..195907,
FT                   195929..195994,196040..196096,196160..196216,
FT                   196247..196312,196373..196438))
FT                   /note="7 probable transmembrane helices predicted for
FT                   BP1173 by TMHMM2.0 at aa 85-107, 127-149, 159-178, 199-218,
FT                   233-255, 262-284 and 289-308"
FT   CDS             196546..197154
FT                   /transl_table=11
FT                   /locus_tag="BP1174"
FT                   /product="hypothetical protein"
FT                   /note="no significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYX7"
FT                   /protein_id="CAE41471.1"
FT                   /translation="MGRRARRPGSGRRFFGHGGYDPRHGDLIRLPLHFYKFPAAELPGA
FT                   RPGPTLYRLASEHAMEIAALTWSTPLARLAPVPPRTPAAPPSHDWPHAAPSVRPHGAAG
FT                   PAAAPVDLLRDLHAQARMARAVAAYQAEQAARQTAARSPCAAQDLGDIDCLMVLQAYRV
FT                   AMPNAPVQDLQGMPPAAQRGSPAVGPIARTGPADQQIRR"
FT   CDS             complement(197232..197585)
FT                   /transl_table=11
FT                   /locus_tag="BP1175"
FT                   /product="putative exported protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein Pa0320 TR:Q9I6H1 (EMBL:AE004470) (116 aa) fasta
FT                   scores: E(): 3.7e-06, 35.05% id in 97 aa, and to
FT                   Escherichia coli protein YgiW precursor or B3024 or Z4376
FT                   or Ecs3906 SW:YGIW_ECOLI (P52083) (130 aa) fasta scores:
FT                   E(): 3.8e-05, 36.63% id in 101 aa"
FT                   /db_xref="InterPro:IPR005220"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYX6"
FT                   /protein_id="CAE41472.1"
FT                   /translation="MSKSIVLTLATQAGLAQAQYVGPSSNQQMSVKELLDTARDDAVVT
FT                   LRGKLVKQLSDDTYLLDDGTGRVQVEIDRHLFPPNQPVDANTLVEVSGEFDKEVIGTSE
FT                   VEAKALRILGAAK"
FT   misc_feature    complement(197532..197585)
FT                   /note="Signal peptide predicted for BP1175 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.982) with cleavage site
FT                   probability 0.829 between residues 18 and 19"
FT   CDS             complement(197669..198658)
FT                   /transl_table=11
FT                   /gene="astE"
FT                   /gene_synonym="aruE"
FT                   /locus_tag="BP1176"
FT                   /product="putative succinylglutamate desuccinylase"
FT                   /EC_number="3.1.-.-"
FT                   /note="Similar to Pseudomonas aeruginosa succinylglutamate
FT                   desuccinylase AstE or AruE or Pa0901 SW:ASTE_PSEAE (O50177)
FT                   (332 aa) fasta scores: E(): 0.23, 25.82% id in 302 aa, and
FT                   to Agrobacterium tumefaciens Agr_pat_335p TR:AAK90609
FT                   (EMBL:AE007893) (335 aa) fasta scores: E(): 0.0023, 26.44%
FT                   id in 276 aa"
FT                   /db_xref="GOA:Q7VYX5"
FT                   /db_xref="InterPro:IPR007036"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYX5"
FT                   /protein_id="CAE41473.1"
FT                   /translation="MNTPTPVFTDYLRAHQFLGMQPGPRLLVLGAVHGNEVCGTRAIER
FT                   ILAELESGALAITRGQLTLLPVTNPLAYRKGERQGDRNLNRNLRVCATPTDYEDRIGNA
FT                   LCPLLQAHDVLLDLHSFHTGGQPFAMLGPRDNQEALEPFAHAREEARLVAHLGPRRVVE
FT                   GWMQAYERGVRRRREQNPGAPAALLDAAYGVGSTEYFRAHGGYGVTLECGQHDDPAAPE
FT                   VAYRAIRQTLALLGLADIALEPPRRDFETLCLVDVVDREADGDAFARPWASFDPVRQGE
FT                   LVGTRADGRQVLAPRDGYVVFPNPRALAGNEWFYFAVASDRLGEDAGN"
FT   repeat_region   198759..198790
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   198759..199811
FT   CDS             198861..199811
FT                   /transl_table=11
FT                   /locus_tag="BP1177"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTA4"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTA4"
FT                   /protein_id="CAE41474.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS"
FT   misc_feature    199119..199184
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   misc_feature    199242..199775
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   repeat_region   complement(199780..199811)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(199877..200740)
FT                   /transl_table=11
FT                   /locus_tag="BP1178"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein Pa2712 TR:Q9I0D0 (EMBL:AE004699) (287 aa) fasta
FT                   scores: E(): 6.3e-48, 52.77% id in 288 aa, and to Rhizobium
FT                   loti Mlr3480 protein TR:Q98G57 (EMBL:AP003002) (303 aa)
FT                   fasta scores: E(): 3.5e-08, 31.67% id in 281 aa"
FT                   /db_xref="GOA:Q7VYX4"
FT                   /db_xref="InterPro:IPR000620"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYX4"
FT                   /protein_id="CAE41475.1"
FT                   /translation="MPFNQTVWAARGSTALFVLLWSSGAIFAKWGLDYASPFAFLVLRF
FT                   ALALAVLTALGLRAGRCLPAPGTRLRTAATGALLLGGYSICYLLALQHGVTPGVLATVL
FT                   GVQPLLTLLWLERDLPARRLAGLTLALAGLVLVVWRNIDVARLNHAGMAYALAALGCMT
FT                   AGALLQKGSRQAPGEVLPLQYATSLALCLALAPGQPWQVQWSPGFVAAWLWLALVISVA
FT                   ATLLLYRLIQGGNLVNVTSLFYLVPPGTALLDYLLLGNRPAPASLAGMAAIVAGLGLVF
FT                   GRRRAH"
FT   misc_feature    complement(199895..200266)
FT                   /note="HMMPfam hit to PF00892, Integral membrane protein
FT                   DUF6"
FT   misc_feature    complement(join(199895..199951,199967..200032,
FT                   200048..200113,200240..200305,200327..200383,
FT                   200456..200521,200561..200626,200657..200719))
FT                   /note="8 probable transmembrane helices predicted for
FT                   BP1178 by TMHMM2.0 at aa 7-28, 38-60, 73-95, 119-138,
FT                   145-167, 209-231, 236-258 and 263-282"
FT   misc_feature    complement(200324..200686)
FT                   /note="HMMPfam hit to PF00892, Integral membrane protein
FT                   DUF6"
FT   misc_feature    complement(200657..200740)
FT                   /note="Signal peptide predicted for BP1178 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.926) with cleavage site
FT                   probability 0.882 between residues 28 and 29"
FT   CDS             complement(201086..202021)
FT                   /transl_table=11
FT                   /locus_tag="BP1180"
FT                   /product="LysR-family transcriptional regulator"
FT                   /note="Similar to the previously sequenced Bordetella
FT                   pertussis Brg1 TR:O30441 (EMBL:AF006000) (291 aa) fasta
FT                   scores: E(): 8e-11, 28.74% id in 254 aa, and to Yersinia
FT                   pestis similar to hypothetical transcriptional regulator
FT                   TR:Q9ZC44 (EMBL:AL031866) (320 aa) fasta scores: E():
FT                   8.5e-23, 30.36% id in 303 aa"
FT                   /db_xref="GOA:Q7VYX3"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYX3"
FT                   /protein_id="CAE41476.1"
FT                   /translation="MYTLKQLEAFYWSAVLGSFSASSRKLHTTQSAVAKRVGELEGFAG
FT                   TPLFERRAKSLVLTQPGRKLFEGAREMLELNSRMVLDMADPSRFEGSVRLGVTELVALT
FT                   SLAGVIERLNQRYPKIQLVPEIEAGITMYQQLERDELDLAIMPGPFWSYEYDCVQLGSV
FT                   TNVWMASPALALDAARALTPHDLAPFPVISQPQNSALSHLYDAWFAQQGLSVKRVLTCN
FT                   SLAMMAQLTMLGLGISHLPSAYFDPLVARGALCRLRVQPDLPTIHYYAVYKKSLINPVV
FT                   STVIDIARETCNFEVEGAFLPLPPGGLRSG"
FT   misc_feature    complement(201587..202012)
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family"
FT   misc_feature    complement(201878..201970)
FT                   /note="ScanRegExp hit to PS00044, Bacterial regulatory
FT                   proteins, lysR family signature."
FT   misc_feature    complement(201908..201973)
FT                   /note="Predicted helix-turn-helix motif with score 1013
FT                   (+2.64 SD) at aa 43-64, sequence GSFSASSRKLHTTQSAVAKRVG"
FT   CDS             complement(202134..202871)
FT                   /transl_table=11
FT                   /gene="glnQ"
FT                   /locus_tag="BP1181"
FT                   /product="amino acids ABC transporter, ATP-binding protein"
FT                   /note="Similar to Bacillus stearothermophilus glutamine
FT                   transport ATP-binding protein GlnQ SW:GLNQ_BACST (P27675)
FT                   (242 aa) fasta scores: E(): 1.6e-52, 61.15% id in 242 aa,
FT                   and to Pseudomonas aeruginosa probable ATP-binding
FT                   component of ABC transporter Pa4192 TR:Q9HWI9
FT                   (EMBL:AE004835) (247 aa) fasta scores: E(): 9.6e-59, 70.29%
FT                   id in 239 aa"
FT                   /db_xref="GOA:Q7VYX2"
FT                   /db_xref="HSSP:1B0U"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYX2"
FT                   /protein_id="CAE41477.1"
FT                   /translation="MIKLEGVNKWYGEHHVLKDVSLEVGRGEVLVVCDPSGSGKSTLIR
FT                   TINRLEPIGKGVIRIDGQDIHAKGVNINTLRRGIGFVFQQFNLFPHMSVLDNVTYAPLH
FT                   ILKTPRREAEALAHQLLERVGMAHKAQAYPGALSGGQQQRVAIARALALKPPIMLFDEP
FT                   TSALDPEMVGEVLQVIKSLARDGMTMVCVTHEMGFAREVSDRVIFMDAGEILEIATPQR
FT                   FFSAPEHPRAQRFLADIIGHHPA"
FT   misc_feature    complement(202236..202793)
FT                   /note="HMMPfam hit to PF00005, ABC transporter"
FT   misc_feature    complement(202419..202463)
FT                   /note="ScanRegExp hit to PS00211, ABC transporters family
FT                   signature. Confirmed by InterPro eMOTIF pattern match."
FT   CDS             complement(202891..203580)
FT                   /transl_table=11
FT                   /locus_tag="BP1182"
FT                   /product="amino acids ABC transporter, permease protein"
FT                   /note="Similar to Pseudomonas aeruginosa probable permease
FT                   of ABC transporter Pa4193 TR:Q9HWI8 (EMBL:AE004835) (234
FT                   aa) fasta scores: E(): 3.1e-45, 57.33% id in 218 aa, and to
FT                   Agrobacterium tumefaciens Agr_l_1163p TR:AAK89156
FT                   (EMBL:AE008256) (252 aa) fasta scores: E(): 4.6e-43, 52.42%
FT                   id in 227 aa"
FT                   /db_xref="GOA:Q7VYX1"
FT                   /db_xref="InterPro:IPR010065"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYX1"
FT                   /protein_id="CAE41478.1"
FT                   /translation="MLDILHDYWPMLLVGQYPNGPLGGLALTLILALLGLLLSMPLALL
FT                   IAIARVSPFRGLRVASRLLVNTVRGMPLLMLIFWAYFAVPKLTGGSISGFWTLVTALVI
FT                   YESAYLSEVIRSGIEAIPKGQIEASRSLGVGYWTTMRKVVLPQALFNVLPSMTSQFVST
FT                   IKETSLGYVISVNELTFAANQVNNLVLTQPLQVFGILAIIYFLVCFSLSRSVAWLDSWV
FT                   RRSRSMA"
FT   misc_feature    complement(join(202927..202992,203329..203394,
FT                   203434..203499))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BP1182 by TMHMM2.0 at aa 27-49, 62-84 and 196-218"
FT   misc_feature    complement(203020..203232)
FT                   /note="HMMPfam hit to PF00528, Binding-protein-dependent
FT                   transport systems inner membrane component"
FT   misc_feature    complement(203143..203229)
FT                   /note="ScanRegExp hit to PS00402, Binding-protein-dependent
FT                   transport systems inner membrane comp. sign. Confirmed by
FT                   InterPro eMOTIF pattern match."
FT   CDS             complement(203573..204262)
FT                   /transl_table=11
FT                   /locus_tag="BP1183"
FT                   /product="amino acids ABC transporter, permease protein"
FT                   /note="Similar to Escherichia coli glutamate/aspartate
FT                   transport system permease protein gltj gltj or b0654
FT                   SW:GLTJ_ECOLI (P41074) (246 aa) fasta scores: E(): 6.4e-22,
FT                   32.47% id in 234 aa, and to Pseudomonas aeruginosa probable
FT                   permease of ABC transporter Pa4194 TR:Q9HWI7
FT                   (EMBL:AE004835) (232 aa) fasta scores: E(): 7.6e-36, 47.03%
FT                   id in 219 aa"
FT                   /db_xref="GOA:Q7VYX0"
FT                   /db_xref="InterPro:IPR010065"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYX0"
FT                   /protein_id="CAE41479.1"
FT                   /translation="MFFLDAHYLSQLADGMMTTVQLFLVAWVLAFTLAVLLVVIRTTNL
FT                   APCRWFVDAYVEYHRNVPLLVQVLFWYFGMPELLPEGVRGWLYQHNAELSLAAIALGLG
FT                   SAAYIAEDIRSGLRAIPGTQFEAARALGSSYLQCMRHVIVPQALRISIPPLVGRALLLF
FT                   KNTSVAMAIGVVELTYQAREIENETYRTFATFGAATLMYLLGSFLLMFIGSRVYARYNI
FT                   GSGGRRA"
FT   misc_feature    complement(join(203624..203689,203720..203785,
FT                   204143..204208))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BP1183 by TMHMM2.0 at aa 18-40, 159-181 and 191-213"
FT   misc_feature    complement(203705..203917)
FT                   /note="HMMPfam hit to PF00528, Binding-protein-dependent
FT                   transport systems inner membrane component"
FT   misc_feature    complement(203828..203914)
FT                   /note="ScanRegExp hit to PS00402, Binding-protein-dependent
FT                   transport systems inner membrane comp. sign. Confirmed by
FT                   InterPro eMOTIF pattern match."
FT   misc_feature    complement(203834..203899)
FT                   /note="Predicted helix-turn-helix motif with score 1010
FT                   (+2.63 SD) at aa 122-143, sequence GTQFEAARALGSSYLQCMRHVI"
FT   CDS             complement(204366..205082)
FT                   /transl_table=11
FT                   /locus_tag="BP1184"
FT                   /product="probable solute-binding protein"
FT                   /note="Similar to Escherichia coli cystine-binding
FT                   periplasmic protein precursor FliY or B1920 SW:FLIY_ECOLI
FT                   (P39174) (266 aa) fasta scores: E(): 4.8e-13, 26% id in 223
FT                   aa, and to Pseudomonas aeruginosa probable binding protein
FT                   component of ABC transporter Pa4195 TR:Q9HWI6
FT                   (EMBL:AE004836) (276 aa) fasta scores: E(): 8.1e-24, 36.17%
FT                   id in 235 aa"
FT                   /db_xref="GOA:Q7VYW9"
FT                   /db_xref="InterPro:IPR018313"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYW9"
FT                   /protein_id="CAE41480.1"
FT                   /translation="MLCGTLGTSQPFSYQDAATRTVVGYDVDMCKLVADKLGVKVNYKL
FT                   LSVAARVPELNESRVDILAANLGYSPERAEQIAFSHTYYVSPQKLLVRKDSNLQTIESV
FT                   NGRRVAATKGSSSEREIKRILDKSQVLGFTDSSASYLALQQKKVDAQFASELVLVRLML
FT                   QSPPTAPVSIIDKAVFDEPWGLGMRKSETRFIAKVNEILDQAEASGEAQRLFEKWFGAQ
FT                   TPYKLQRSFKIGPIAG"
FT   misc_feature    complement(204420..205082)
FT                   /note="HMMPfam hit to PF00497, Bacterial extracellular
FT                   solute-binding proteins, family 3"
FT   misc_feature    complement(204972..205013)
FT                   /note="ScanRegExp hit to PS01039, Bacterial extracellular
FT                   solute-binding proteins, family 3 signature."
FT   CDS             complement(205245..206447)
FT                   /transl_table=11
FT                   /gene="aspC"
FT                   /gene_synonym="aatA"
FT                   /locus_tag="BP1185"
FT                   /product="aspartate aminotransferase"
FT                   /EC_number="2.6.1.1"
FT                   /note="Similar to Rhizobium leguminosarum aspartate
FT                   aminotransferase AspC or AatA SW:AAT_RHILP (O86459) (400
FT                   aa) fasta scores: E(): 3.8e-76, 51.76% id in 396 aa, and to
FT                   Rhizobium meliloti aspartate aminotransferase A AatA or
FT                   R02325 or smc01578 SW:AATA_RHIME (Q02635) (400 aa) fasta
FT                   scores: E(): 4.4e-76, 50.75% id in 396 aa"
FT                   /db_xref="GOA:Q7VYW8"
FT                   /db_xref="HSSP:5BJ4"
FT                   /db_xref="InterPro:IPR015421"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYW8"
FT                   /protein_id="CAE41481.1"
FT                   /translation="MSIVADKIKRIKLSPSVATRAIVAQLREEGRRVIDLTVGEPDFST
FT                   PAHICEAAIAAMQRGETKYPPAQGTMPLRKAVRARLREETGVDYPEGRIIVGTGAKQVL
FT                   YNGLAATLNEGDEVIIPAPYWVSYPDMVLVNGGVPVAVTATPATQYKLTPQALEAAITP
FT                   RTKWLMMNAPSNPTGAIYTADEWRGLAEVLRRHPHVWLMTDDIYARLNFTATPTVHPLQ
FT                   VAPELAERTLVVNGVSKAYAMTGWRIGYGAGPEALIKAIAILQSQSTSGACSISQAAAR
FT                   EALAGPQDCVAEFARTFKARRDAAVAALQGAPGLSVVMPEGAFYVFPDCAGVLGKTTPD
FT                   GRVLETDTDFVHYLLREAGVAVIDGTPYGVPGTFRLSFAAALEDIQQGCAAIRAACERL
FT                   A"
FT   misc_feature    complement(205254..206447)
FT                   /note="HMMPfam hit to PF00155, Aminotransferase class I and
FT                   II"
FT   misc_feature    complement(205701..205742)
FT                   /note="ScanRegExp hit to PS00105, Aminotransferases class-I
FT                   pyridoxal-phosphate attachment site. Confirmed by InterPro
FT                   eMOTIF pattern match."
FT   CDS             complement(206444..207124)
FT                   /transl_table=11
FT                   /locus_tag="BP1186"
FT                   /product="putative aldolase"
FT                   /note="Similar to Pseudomonas straminea
FT                   4-hydroxy-4-methyl-2-oxoglutarate aldolase ProA TR:Q9AQI0
FT                   (EMBL:AB050935) (227 aa) fasta scores: E(): 1.2e-20, 39.37%
FT                   id in 193 aa, and to Agrobacterium tumefaciens Agr_pat_472p
FT                   TR:AAK90703 (EMBL:AE007901) (227 aa) fasta scores: E():
FT                   2.8e-31, 46.39% id in 222 aa"
FT                   /db_xref="HSSP:1Q5X"
FT                   /db_xref="InterPro:IPR005493"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYW7"
FT                   /protein_id="CAE41482.1"
FT                   /translation="MSSIGFRILPLPEPPAADEVLAGFAQIGTAQISDCMGRLYGVQGL
FT                   RPLHAGAARIVGRAITVKTRPGDNLMIHKAISLAGPGDVIVVDGAGETANALVGELMMM
FT                   DAQSRGVAAFVIDGAVRDLDVFQQGAFGCFARAVSHKGPYKDGPGEINVPVSIGGQVVA
FT                   AGDVIVGDADGVVAIPLAQAGAVLAAARRKEDAELAAKEKLRAGTYAKPWVDRIIAEKT
FT                   GDAQ"
FT   CDS             207761..208645
FT                   /transl_table=11
FT                   /locus_tag="BP1188"
FT                   /product="hypothetical protein"
FT                   /note="Similar to the internal region of Bordetella
FT                   bronchiseptica adhesin FhaB TR:Q9JP78 (EMBL:AF111796) (3634
FT                   aa) fasta scores: E(): 0.8, 28.31% id in 226 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYW6"
FT                   /protein_id="CAE41483.1"
FT                   /translation="MQLTKNFVKAKNPCTAGYRWFLRDHNGHGEYQPVLDALVEAGRID
FT                   DAMWLIDQFGPTDQVLNLDTLDAPALVFAGTVTVRRGITVDGVLRAGRNIVCGAGIRAG
FT                   TLVQAGEGIDARGSIVCDGDVQAGGDIQTTWGVQVGKRLTVGGQLRAGWDIRTGGDLNV
FT                   AGPIRAGDAVVSGGILKCEQGIRAGQDVQAEYDINVVSGIQAGGSILAGGHVETGWGMI
FT                   AGHDIVADGAIRSGEGLEAGGRIEAGEGHGVYAGLRVRVDAWPDSARVAAARCFGPLLS
FT                   GHWIGAAALDAQA"
FT   CDS             208657..208875
FT                   /transl_table=11
FT                   /locus_tag="BP1188A"
FT                   /product="hypothetical protein"
FT                   /note="Similar to Homo sapiens MHC class III region
FT                   complement C4A TR:Q30211 (EMBL:S58715) (79 aa) fasta
FT                   scores: E(): 4.1, 32.87% id in 73 aa"
FT                   /db_xref="InterPro:IPR019180"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYW5"
FT                   /protein_id="CAE41484.1"
FT                   /translation="MAYPRVMQRLPDQAVAGDPRPQPPEPPEPSDCCQSGCIPCVYDLY
FT                   DEARERYQEALRAWRARHPEAAGGGDA"
FT   CDS             complement(208883..209311)
FT                   /transl_table=11
FT                   /locus_tag="BP1189"
FT                   /product="lipoprotein"
FT                   /note="Similar to Vibrio cholerae lipoprotein Vc1962
FT                   TR:Q9KQN6 (EMBL:AE004271) (163 aa) fasta scores: E():
FT                   5.4e-15, 42.63% id in 129 aa, and to Treponema pallidum 17
FT                   kDa lipoprotein precursor Tpp17 or Tp0435 SW:TA17_TREPA
FT                   (P29722) (156 aa) fasta scores: E(): 0.0073, 30.06% id in
FT                   153 aa"
FT                   /db_xref="InterPro:IPR007298"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYW4"
FT                   /protein_id="CAE41485.1"
FT                   /translation="MKTLLPVLALAALLSACNANAPSDTPEGAPPPDTHTSRNSLDWQG
FT                   TYQGVLPCADCPGIRTVLTLRADNTYQLQTQYLERQPRPDTVQGRFGWLTGDNAIELDS
FT                   AGDHYRYQVGENRLTMMSQDGTLPSGPLAEHYVLKRSQ"
FT   misc_feature    complement(209249..209311)
FT                   /note="Signal peptide predicted for BP1189 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.653 between residues 21 and 22"
FT   misc_feature    complement(209261..209293)
FT                   /note="PS00013 Prokaryotic membrane lipoprotein lipid
FT                   attachment site."
FT   CDS             209539..209985
FT                   /transl_table=11
FT                   /locus_tag="BP1190"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Rhizobium loti Mll1641 protein TR:Q98K47
FT                   (EMBL:AP002997) (152 aa) fasta scores: E(): 1e-31, 54.11%
FT                   id in 146 aa, and to Agrobacterium tumefaciens Agr_c_871p
FT                   TR:AAK86305 (EMBL:AE007984) (167 aa) fasta scores: E():
FT                   1.3e-30, 52.05% id in 146 aa. Also similar to BP2382,
FT                   42.553% identity (42.553% ungapped) in 141 aa overlap."
FT                   /db_xref="InterPro:IPR003779"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYW3"
FT                   /protein_id="CAE41486.1"
FT                   /translation="MKPRMNPYTVAPRTMQALMALQSYVNDCGLEHSLLELVKMRASQI
FT                   NGCAFCLNLHYTEARRQGESELRLQLLNAWRESPLYTARERAALAWTEALTLLAQTRAP
FT                   DADYAELATHFDELERVNLTMAINTINAWNRIAVGFRSLHPVNE"
FT   CDS             209978..210883
FT                   /transl_table=11
FT                   /locus_tag="BP1191"
FT                   /product="putative RNA polymerase sigma factor"
FT                   /note="Similar to Caulobacter crescentus putative RNA
FT                   polymerase sigma factor Cc3266 TR:Q9A3D8 (EMBL:AE005990)
FT                   (291 aa) fasta scores: E(): 2.9e-50, 53.19% id in 282 aa,
FT                   and to Streptomyces coelicolor putative RNA polymerase
FT                   sigma factor 2 Scg18.10C TR:Q9K3H7 (EMBL:AL390188) (295 aa)
FT                   fasta scores: E(): 3.5e-39, 42.76% id in 297 aa"
FT                   /db_xref="GOA:Q7VYW2"
FT                   /db_xref="InterPro:IPR007627"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYW2"
FT                   /protein_id="CAE41487.1"
FT                   /translation="MSKTAAITIDTPGADDFEPHRRHLYGLAYRMLGSWSEAEDIVQET
FT                   WLRWREIDPATLDNARAFLSRIATRLCLDVLKSARVRRQVYVGPWLPEPLPDAQAYAGA
FT                   APGEIAHDVSVALMLALERLSASERAAFLLHDVFDVPFAEIAGTLGRTEAGCRQLAARA
FT                   RNRVRESRPRFAVEESEGIRLARAFIDAAQHGDVDILRQLLADDAVLHSDGGGKKLAFM
FT                   RPIQGRANIVRAFAGLARKGQSDLSSVRIVQLNGMPAIYGIERDGLPRTISLGVCGGRI
FT                   VRVYIMRNPDKLAHLARFTG"
FT   misc_feature    210053..210214
FT                   /note="HMMPfam hit to PF00776, Sigma-70 factor (ECF
FT                   subfamily)"
FT   CDS             211028..211354
FT                   /transl_table=11
FT                   /locus_tag="BP1192"
FT                   /product="putative exported protein"
FT                   /note="Similar to Burkholderia cepacia phosphate transport
FT                   protein TR:Q9RMS6 (EMBL:AF190626) (181 aa) fasta scores:
FT                   E(): 7.3, 31.63% id in 98 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYW1"
FT                   /protein_id="CAE41488.1"
FT                   /translation="MKTTHRILAAGLLAALCAAASAAQAQAVQQQYQYPSAPSKDGSQS
FT                   PPSTLRITETPGAAAVPIRDTPESVREYQRCRDVSDRAAVSNEQMRAGVAQCLKELEAR
FT                   RQAG"
FT   misc_feature    211028..211102
FT                   /note="Signal peptide predicted for BP1192 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.751 between residues 25 and 26"
FT   CDS             211379..211597
FT                   /transl_table=11
FT                   /locus_tag="BP1193"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein Pa3612 TR:Q9HY14 (EMBL:AE004781) (73 aa) fasta
FT                   scores: E(): 1.6e-11, 51.47% id in 68 aa, and to Vibrio
FT                   cholerae hypothetical protein Vca0163 TR:Q9KN03
FT                   (EMBL:AE004357) (70 aa) fasta scores: E(): 4.5e-09, 49.2%
FT                   id in 63 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYW0"
FT                   /protein_id="CAE41489.1"
FT                   /translation="MNPQLLALLVEREMPYGKYKGRLMADLPGHYLAWFARNGFPAGEI
FT                   GRLLALMHELDHNGLRDLLKPLRGGRA"
FT   CDS             211647..212264
FT                   /transl_table=11
FT                   /locus_tag="BP1194"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Thermotoga maritima conserved
FT                   hypothetical protein Tm1181 TR:Q9X0R3 (EMBL:AE001774) (179
FT                   aa) fasta scores: E(): 7.8e-26, 45.18% id in 166 aa, and to
FT                   Bacillus halodurans Bh1524 protein TR:Q9KCP5
FT                   (EMBL:AP001512) (183 aa) fasta scores: E(): 7.4e-24, 41.95%
FT                   id in 174 aa"
FT                   /db_xref="GOA:Q7VYV9"
FT                   /db_xref="HSSP:1VIU"
FT                   /db_xref="InterPro:IPR020084"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYV9"
FT                   /protein_id="CAE41490.1"
FT                   /translation="MSAARMPANAMSADPSDSSHLVETLVSSETLCDGGFLKARRDTVR
FT                   LPSGRNATREYIVHPGAVVVVPLLDDGRVLLERQFRYPIGQVMTEFPAGKLDPGEDPLA
FT                   CARRELLEETGYTAGQWASAGALHLAIAYSTEIIHIFFARQLRAGTRQLDEDEFLDVHS
FT                   ATVPELLQACREGRVTDAKTLTCVLWLQNVLAGDWPLDWQPA"
FT   misc_feature    211821..212216
FT                   /note="HMMPfam hit to PF00293, MutT-like domain"
FT   misc_feature    211926..211991
FT                   /note="ScanRegExp hit to PS00893, Nudix hydrolase
FT                   signature."
FT   CDS             212261..212602
FT                   /transl_table=11
FT                   /locus_tag="BP1195"
FT                   /product="ferredoxin"
FT                   /note="Similar to Synechococcus sp ferredoxin II
FT                   SW:FER2_SYNP6 (P08451) (104 aa) fasta scores: E(): 0.00022,
FT                   37.5% id in 96 aa, and to Vibrio cholerae ferredoxin Vc0311
FT                   TR:Q9KV47 (EMBL:AE004119) (89 aa) fasta scores: E():
FT                   1.3e-06, 40.47% id in 84 aa"
FT                   /db_xref="GOA:Q7VYV8"
FT                   /db_xref="HSSP:1CZP"
FT                   /db_xref="InterPro:IPR001041"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYV8"
FT                   /protein_id="CAE41491.1"
FT                   /translation="MNPAGHEVEVRPQGWRFDARPGESLLRAAARAGIRLPSSCRNGTC
FT                   RTCLCRLVAGEVAYLVEWPGVSADEKAQGWILPCVAQALAPVAIEAPQATPLPPKPPPS
FT                   TLLTGARRA"
FT   misc_feature    212276..212515
FT                   /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster
FT                   binding domain"
FT   CDS             complement(212636..213790)
FT                   /transl_table=11
FT                   /locus_tag="BP1196"
FT                   /product="putative exported protein"
FT                   /note="no significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYV7"
FT                   /protein_id="CAE41492.1"
FT                   /translation="MTGTPRAPMVSGLFRIGALLAAGLLCGGAWAQDAEADPYGDPIVA
FT                   PRAAPPQWKPLKIDPPGHRYAFPLYSSKNLERDDLRGIRRLVIVLHGVKRNAASIHGTV
FT                   TALFAANPERAEDTLVIAPKFASAIDAGFAAMPAWRRASWEDGELSMQARGRPAPVSSL
FT                   QVLDDLLHELSDSSRLPALRTIVLAGHSGGAQLVQRYAVLNSLDETLRREGLTLQYVVA
FT                   NPSSYLYLSPERPRADGKGHAPYERGICPTYNQYKYGLDHLPAYARGLDPASLPARYAQ
FT                   RHVTYLLGSADNNPEHQLLDKSCGAEAQGATRLARGLGYWRYEAGVLAPRLPRSVAWHH
FT                   DAQEVVDAGHDAAQMFSSSCGARALLGDRSAPLPDGPACLPARR"
FT   misc_feature    complement(213698..213790)
FT                   /note="Signal peptide predicted for BP1196 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.998 between residues 31 and 32"
FT   CDS             complement(213787..214515)
FT                   /transl_table=11
FT                   /gene="btr"
FT                   /locus_tag="BP1197"
FT                   /product="transcriptional regulatory protein"
FT                   /note="Similar to the previously sequenced Bordetella
FT                   pertussis transcriptional regulatory protein Btr
FT                   SW:BTR_BORPE (Q08530) (241 aa) fasta scores: E(): 9.9e-65,
FT                   78.68% id in 244 aa. The previously sequenced btr may
FT                   contain a frameshift following codon 26."
FT                   /db_xref="GOA:Q08530"
FT                   /db_xref="InterPro:IPR018335"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q08530"
FT                   /protein_id="CAE41493.1"
FT                   /translation="MQRRVPLSPDAAHCSSCMLGHVCVPVGMPANEVEKLDELVKERVR
FT                   VERGKTLYELDDPLDAVYGVRFGSLKTQLEDSSGQLQITGFHLPGEIVGLDGMIESKHV
FT                   SSAVALEDSEVCVIRLPEIDRVSTQLPSLQQQFRRLMSREITRSHQMLATVGAMRSEQR
FT                   LAAFLLNLSQRYAALGYSSTEFVLRMSREEIGNYLGLTLETVSRLFSRFGREGLIRINQ
FT                   REVRLIDLPGLKQLIGQESC"
FT   misc_feature    complement(213862..213957)
FT                   /note="HMMPfam hit to PF00325, Bacterial regulatory
FT                   proteins, crp family"
FT   misc_feature    complement(213880..213951)
FT                   /note="ScanRegExp hit to PS00042, Bacterial regulatory
FT                   proteins, crp family signature. Confirmed by InterPro
FT                   eMOTIF pattern match."
FT   misc_feature    complement(213886..213951)
FT                   /note="Predicted helix-turn-helix motif with score 1980
FT                   (+5.93 SD) at aa 189-210, sequence MSREEIGNYLGLTLETVSRLFS"
FT   misc_feature    complement(214120..214398)
FT                   /note="HMMPfam hit to PF00027, Cyclic nucleotide-binding
FT                   domain"
FT   CDS             214853..217450
FT                   /transl_table=11
FT                   /gene="clpB"
FT                   /gene_synonym="htpM"
FT                   /locus_tag="BP1198"
FT                   /product="ATP-dependent protease, ATPase subunit"
FT                   /note="Similar to Escherichia coli clpB protein ClpB or
FT                   HtpM or b2592 SW:CLPB_ECOLI (P03815) (857 aa) fasta scores:
FT                   E(): 2.6e-183, 65.77% id in 862 aa, and to Neisseria
FT                   meningitidis ClpB protein ClpB or Nma1683 TR:Q9JTP9
FT                   (EMBL:AL162756) (859 aa) fasta scores: E(): 3.1e-197,
FT                   69.98% id in 863 aa. Also similar to BP2753, 37.133%
FT                   identity (46.014% ungapped) in 886 aa overlap."
FT                   /db_xref="GOA:Q7VYV6"
FT                   /db_xref="InterPro:IPR004176"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VYV6"
FT                   /protein_id="CAE41494.1"
FT                   /translation="MRFDKLTTKFQQALADAQSLAARNDHPYIEPVHVLAALLGDPDSG
FT                   AASLLARAGVAVNRVQPAIDSALKGLPQVQGDDNVQVGRELQSVLVRTDKEAARRGDTY
FT                   IASELFLLALADDKGDAGRILREAGLQKKALEAAIDAVRGGENVSGAEGESNREALSKY
FT                   TLDLTERARQGKLDPVIGRDDEIRRTIQILQRRTKNNPVLIGEPGVGKTAIVEGLAQRI
FT                   VNDEVPETLRGKRVLSLDLAALLAGAKFRGEFEERLKAVLKELAQDDGQNIVFIDELHT
FT                   MAGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQKVLVGEP
FT                   DVESTIAILRGLQERYELHHGVEITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAGAR
FT                   IRMEIDSKPEVMDRLDRRIIQLKIEREAVKKETDDASMRRLAVIEEELEKLQREYNDYE
FT                   EIWKAEKAAVQGTQAIKEEIDRVRAEMAELQRKGQFDKLAELQYGKLPELEARLKAADS
FT                   AEREAGESDSGKPRLLRTQVGAEEIAEVVSRATGIPVAKMMQGERDKLLRMEDFLHKRV
FT                   VGQDEAVRLVSDAIRRSRAGLADPSRPYGSFLFLGPTGVGKTELTRALADFLFDSEEHM
FT                   IRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFN
FT                   VLLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSQHIQSMAGKPYEVIKEVVWDELKHT
FT                   FRPEFLNRIDEVVVFHGLEAQHIESIARIQLKRLGERLEKQEMRLDVSDAALAEIARSG
FT                   FDPVFGARPLKRAIQQQIENPVAKLILEGVFGPRDVVPVDWQDGKFVFTRTLQ"
FT   misc_feature    215450..216034
FT                   /note="HMMPfam hit to PF00004, ATPase family associated
FT                   with various cellular activities (AAA)"
FT   misc_feature    215465..215488
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   misc_feature    215729..215767
FT                   /note="ScanRegExp hit to PS00870, Chaperonins clpA/B
FT                   signature 1. Confirmed by InterPro eMOTIF pattern match."
FT   misc_feature    216683..216706
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   misc_feature    216761..216817
FT                   /note="ScanRegExp hit to PS00871, Chaperonins clpA/B
FT                   signature 2. Confirmed by InterPro eMOTIF pattern match."
FT   CDS             join(217766..218122,219157..220644)
FT                   /pseudo
FT                   /transl_table=11
FT                   /gene="bapB"
FT                   /locus_tag="BP1200"
FT                   /product="autotransporter (pseudogene)"
FT                   /note="Pseudogene. This CDS is disrupted by the insertion
FT                   of IS481. Identical to the previously sequenced Bordetella
FT                   pertussis BapB protein BapB TR:Q9F4B3 (EMBL:AJ277633) (482
FT                   aa) fasta scores: E(): 1.5e-131, 100% id in 482 aa, and
FT                   similar to the C-terminal region of the previously
FT                   sequenced Bordetella pertussis tracheal colonization factor
FT                   precursor TcfA2 (BP1201) TR:O86135 (EMBL:AJ009785) (647 aa)
FT                   fasta scores: E(): 1e-81, 71.28% id in 491 aa"
FT                   /db_xref="PSEUDO:CAE41495.1"
FT   repeat_region   218105..218136
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   218105..219157
FT   CDS             218207..219157
FT                   /transl_table=11
FT                   /locus_tag="BP1199"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q7TTA4"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q7TTA4"
FT                   /protein_id="CAE41496.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS"
FT   misc_feature    218465..218530
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   misc_feature    218588..219121
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   repeat_region   complement(219126..219157)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             221028..222971
FT                   /transl_table=11
FT                   /gene="tcfA"
FT                   /locus_tag="BP1201"
FT                   /product="tracheal colonization factor precursor"
FT                   /note="Identical to the previously sequenced Bordetella
FT                   pertussis tracheal colonization factor precursor Tcfa2
FT                   TR:O86135 (EMBL:AJ009785) (647 aa) fasta scores: E():
FT                   1.7e-171, 99.84% id in 647 aa"
FT                   /db_xref="GOA:O86135"
FT                   /db_xref="InterPro:IPR006315"
FT                   /db_xref="UniProtKB/TrEMBL:O86135"
FT                   /protein_id="CAE41497.1"
FT                   /translation="MHIYGNMNRATPCRGAVRALALALLGAGMWTLSPPSAWALKLPSL
FT                   LTDDELKLVLPTGMSLEDFKRSLQESAPSALATPPSSSPPVAKPGPGSVAEAPSGSGHK
FT                   DNPSPPVVGVGPGMAESSGGHNPGVGGGTHENGLPGIGKVGGSAPGPDTSTGSGPDAGM
FT                   ASGAGSTSPGASGGAGKDAMPPSEGERPDSGMSDSGRGGESSAGGLNPDGAGKPPREEG
FT                   EPGSKSPADGGQDGPPPPRDGGDADPQPPRDDGNGEQQPPKGGGDEGQRPPPAAGNGGN
FT                   GGNGNAQLPERGDDAGPKPPEGEGGDEGPQPPQGGGEQDAPEVPPVAPAPPAGNGVYDP
FT                   GTHTLTTPASAAVSLASSSHGVWQAEMNALSKRMGELRLTPVAGGVWGRAFGRRQDVDN
FT                   RVSREFRQTISGFELGADTALPVADGRWHVGAVAGYTNGRIKFDRGGTGDDDSVHVGAY
FT                   ATYIEDGGFYMDGIVRVSRIRHAFKVDDAKGRRVRGQYRGNGVGASLELGKRFTWPGAW
FT                   YVEPQLEVAAFHAQGADYTASNGLRIKDDGTNSMLGRLGLHVGRQFDLGDGRVVQPYMK
FT                   LSWVQEFDGKGTVRTNDIRHKVRLDGGRTELAVGVASQLGKHGSLFGSYEYAKGSRQTM
FT                   PWTFHVGYRYAW"
FT   misc_feature    221028..221144
FT                   /note="Signal peptide predicted for BP1201 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.986) with cleavage site
FT                   probability 0.982 between residues 39 and 40"
FT   CDS             complement(223068..223763)
FT                   /transl_table=11
FT                   /locus_tag="BP1202"
FT                   /product="TetR-family transcriptional regulator"
FT                   /note="Similar to Rhizobium loti transcriptional regulator
FT                   Mll3386 TR:Q98GC7 (EMBL:AP003001) (219 aa) fasta scores:
FT                   E(): 2.1e-34, 50.73% id in 205 aa, and to Mycobacterium
FT                   tuberculosis CDC1551 transcriptional regulator, TetR family
FT                   Mt3262 TR:AAK47601 (EMBL:AE007140) (200 aa) fasta scores:
FT                   E(): 4.3e-05, 30.23% id in 172 aa"
FT                   /db_xref="GOA:Q7VYV5"
FT                   /db_xref="InterPro:IPR012287"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYV5"
FT                   /protein_id="CAE41498.1"
FT                   /translation="MPLIAPASPQAALSGEPPHGPRARMRRTLLDTAQRLMVQGITPSV
FT                   AELAEAAAVSRATAYRYFPSQSALIAAVVDQSLGPILQWQPQSDDAAERIDELLRFAYP
FT                   RLQQHEASLRAAIMVSLQQYAEASAGQNPDTPRLVRGHRVDTLKHVTAPLASQLEPAAH
FT                   QRVIRALSLLYGTEVFLILKDIWHLELDDIVDVVTWAAQAIVRQAQQEAGIAPTSGKTP
FT                   AKRKRNAPG"
FT   misc_feature    complement(223545..223679)
FT                   /note="HMMPfam hit to PF00440, Bacterial regulatory
FT                   proteins, tetR family"
FT   misc_feature    complement(223572..223637)
FT                   /note="Predicted helix-turn-helix motif with score 1464
FT                   (+4.17 SD) at aa 83-104, sequence PSVAELAEAAAVSRATAYRYFP"
FT   CDS             223921..225129
FT                   /transl_table=11
FT                   /locus_tag="BP1203"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Rhizobium loti Mll9388 protein Mll9388
FT                   TR:Q981G1 (EMBL:AP003016) (408 aa) fasta scores: E():
FT                   5.5e-89, 63.03% id in 395 aa, and to Rhizobium sp
FT                   hypothetical protein Y4ou precursor Y4ou SW:Y4OU_RHISN
FT                   (P55606) (402 aa) fasta scores: E(): 7.6e-88, 62.02% id in
FT                   395 aa"
FT                   /db_xref="InterPro:IPR008322"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VYV4"
FT                   /protein_id="CAE41499.1"
FT                   /translation="MQEIEQRIYLAATYDTKGEEAEYLRQLLRRDGVMVVTVDVATSGQ
FT                   GSPAMVSAQEVAACHPQGAQAVFTGERGSAIVAMALAFERYLAGQRDVGAVLGIGGSGG
FT                   TALVTPAMRALPVGVPKLMVSTMASGNVAPYVGPSDIAMMYSVTDVAGLNRISRRVLAN
FT                   AAGAIAGAFRQARQPIADDGRPAVGITMFGVTTPCVQHVTAALHDRYDCLVFHATGTGG
FT                   QSMEKLADSRLLAGVLDLTTTEVCDFLFGGVLACTDDRFGAIARSGVPYVGSCGALDMV
FT                   NFGALDTVPAACRERLLYPHNPQVTLMRTTAQENARQGAWIAERLNRCEGQVRFLIPEG
FT                   GVSALDAPGQAFHDEAADAALFQALYDHVRQTDKRRLVRVPCHINDPLFARAAVEQFHE
FT                   ISQ"
FT   misc_feature    224548..224568
FT                   /note="ScanRegExp hit to PS00290, Immunoglobulins and major
FT                   histocompatibility complex proteins signature."
FT   CDS             225139..225969
FT                   /transl_table=11
FT                   /locus_tag="BP1204"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Rhizobium meliloti conserved hypothetical
FT                   protein Sma1332 TR:AAK65386 (EMBL:AE007260) (280 aa) fasta
FT                   scores: E(): 9.4e-70, 69.09% id in 275 aa, and to Rhizobium
FT                   loti Mll9387 protein Mll9387 TR:Q981G2 (EMBL:AP003016) (285
FT                   aa) fasta scores: E(): 1.1e-69, 69.34% id in 274 aa"
FT                   /db_xref="InterPro:IPR009215"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYV3"
FT                   /protein_id="CAE41500.1"
FT                   /translation="MPRFERSALLDKFQDMVRRRQPIVGGGAGTGLSAKCEEAGGIDLI
FT                   VIYNSGRYRMAGRGSLAGLLAYGNANDIVLDMAREVLPVVRHTPVLAGVNGTDPFCNFD
FT                   AFLDELARVGFSGVQNFPTVGLIDGTFRANLEETGMGYGLEVEMIRLAHAKGLLTTPYV
FT                   FDPDQARAMTAAGADIVVAHMGLTTGGNIGAETALSLDDCVARIDAIAAAALAERGDVI
FT                   VLCHGGPIATPQDAAHVLQRCRHCHGFYGASSMERLPVEQALTATTRAFKQLSF"
FT   misc_feature    225865..225882
FT                   /note="ScanRegExp hit to PS00190, Cytochrome c family
FT                   heme-binding site signature."
FT   CDS             226037..226489
FT                   /transl_table=11
FT                   /locus_tag="BP1205"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Rhizobium loti Mlr1698 protein Mlr1698
FT                   TR:Q98K03 (EMBL:AP002998) (147 aa) fasta scores: E():
FT                   5.6e-16, 38.29% id in 141 aa, and to Mycobacterium
FT                   tuberculosis hypothetical 16.8 kDa protein Rv1919c or
FT                   Mtv050.03C TR:O53961 (EMBL:AL022020) (154 aa) fasta scores:
FT                   E(): 0.046, 29.41% id in 136 aa"
FT                   /db_xref="InterPro:IPR019587"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYV2"
FT                   /protein_id="CAE41501.1"
FT                   /translation="MSHLVYVSRVVAAPIERVWPHLRDFNGLSAWHPGVADSRLEEGGR
FT                   DDAPGTVRFLSLNPSGYVRERLLMLDDAGRSLRYAIIETDLPMRDYVAGVDLCPVTEGG
FT                   GTFAQWWADFDVVAGANRDEVARLVGEGVFAAGLQALDQYLRDRQG"
FT   CDS             complement(226497..227459)
FT                   /transl_table=11
FT                   /locus_tag="BP1206"
FT                   /product="LysR-family transcriptional regulator"
FT                   /note="Similar to Salmonella typhimurium OsmT protein
FT                   TR:CAC44465 (EMBL:AJ313506) (308 aa) fasta scores: E():
FT                   3.8e-19, 31.66% id in 300 aa, and to Agrobacterium
FT                   tumefaciens Agr_l_1195p TR:AAK89175 (EMBL:AE008258) (298
FT                   aa) fasta scores: E(): 5.7e-25, 34.25% id in 289 aa"
FT                   /db_xref="GOA:Q7VYV1"
FT                   /db_xref="InterPro:IPR011991"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYV1"
FT                   /protein_id="CAE41502.1"
FT                   /translation="MNRLPKHVTLKHLTAFVAVAQESSFTHAARRLFQTQSSVTTLVRQ
FT                   LETALGTQLFARTSRKVLLSAAGQDFLPRVMRLLADFDGVIEDVVRYGALERGRVSVAA
FT                   APSAITQLIAPAAADFARRHPAIRLYLRDDNSGRIQRQVAAQEVDFGLTSRWADAPGLA
FT                   FDPLLEDRFGVLYRADDTSIQPGRDGHVRWERLSHRKLVGVVDETGIMALLRARADLPI
FT                   EAAAPFYEASSTTSQAALVKAGLGVALLPALAVERVREPGLAFALLARPTVMRTLCIIG
FT                   HQERALSPAAAALIDTLRAYVRQATLPAGCRPAGRNSRA"
FT   misc_feature    complement(227004..227432)
FT                   /note="HMMPfam hit to PF00126, Bacterial regulatory
FT                   helix-turn-helix protein, lysR family"
FT   misc_feature    complement(227298..227390)
FT                   /note="ScanRegExp hit to PS00044, Bacterial regulatory
FT                   proteins, lysR family signature."
FT   misc_feature    complement(227328..227393)
FT                   /note="Predicted helix-turn-helix motif with score 1069
FT                   (+2.83 SD) at aa 23-44, sequence SSFTHAARRLFQTQSSVTTLVR"
FT   misc_feature    complement(227376..227459)
FT                   /note="Signal peptide predicted for BP1206 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.801) with cleavage site
FT                   probability 0.764 between residues 28 and 29"
FT   CDS             227564..229006
FT                   /transl_table=11
FT                   /locus_tag="BP1207"
FT                   /product="N-acyl-D-glutamate deacylase"
FT                   /EC_number="3.5.1.82"
FT                   /note="Similar to Alcaligenes xylosoxydans xylosoxydans
FT                   N-acyl-D-glutamate deacylase SW:NDED_ALCXX (P94211) (488
FT                   aa) fasta scores: E(): 1.9e-144, 78.78% id in 476 aa, and
FT                   to Alcaligenes faecalis D-aminoacylase TR:Q9AGH8
FT                   (EMBL:AF332548) (484 aa) fasta scores: E(): 2e-73, 48.13%
FT                   id in 482 aa"
FT                   /db_xref="GOA:Q7VYV0"
FT                   /db_xref="InterPro:IPR012855"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYV0"
FT                   /protein_id="CAE41503.1"
FT                   /translation="MQNAEKLDFKITGGWIIDGTGAPRRRADLGVRDGRIAAIGELGAH
FT                   PARHAWDASGKIVAPGFIDVHGHDDLMFVEKPDLRWKTSQGITTVVVGNCGVSAAPAPL
FT                   PGNTAAALALLGETPLFADVPAYFAALDAQRPMINVAALVGHANLRLAAMRDPQAAPTA
FT                   AEQQAMQDMLQAALEAGAVGFSTGLAYQPGAAAQAAELEGLARVAAERRRLHTSHIRDE
FT                   ADGVEAAVEEVLAIGRGTGCATVVSHHKCMMPQNWGRSRATLANIDRAREQGVEVALDI
FT                   YPYPGSSTILIPERAETIDDIRITWSTPHPECSSEYLADIAARWGCDKTTAARRLAPAG
FT                   AIYFAMDEDEVKRIFQHPCCMVGSDGLPNDARPHPRLWGSFTRVLGRYVREARLMTLEQ
FT                   AVARMTALPARVFGFAERGVLQPGAWADVVVFDPDTVADRATWDEPTLASVGIAGVLVN
FT                   GAEVFPQPPADGRPGQVLRAGA"
FT   CDS             229057..230013
FT                   /transl_table=11
FT                   /locus_tag="BP1208"
FT                   /product="putative exported protein"
FT                   /note="Similar to Rhizobium meliloti conserved hypothetical
FT                   protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta
FT                   scores: E(): 4.6e-47, 44.98% id in 309 aa, and to Comamonas
FT                   testosteroni OrfJ protein TR:Q9RHM9 (EMBL:AB029044) (326
FT                   aa) fasta scores: E(): 6.7e-42, 41.45% id in 316 aa"
FT                   /db_xref="GOA:Q7VYU9"
FT                   /db_xref="InterPro:IPR005064"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYU9"
FT                   /protein_id="CAE41504.1"
FT                   /translation="MRKTLAVLALMAALPAAHADFPERPITLIVPFPAGGPTDIVGRVA
FT                   AAKAGEILGQQIVVENRTGAAGTIGITATARAKPDGYTLGLATVSTHGTAPHLFPNLAY
FT                   DPIKDFTPVSNLVTSPNILSVNPSYPAADLTAFVAHVRANPGRDGYANAGAGGVNDLGM
FT                   IWFLQLIGGKMTSIAYRGSAPALTDAVSGVVPVIFDNFPSSLPYIKSGHLRPLAITGAA
FT                   RNPRLPEVPTFAEQGYRDYDVTAWYGVVAPAGLPDAVRDKLAQAFAQAVRDPATAAKME
FT                   ETSAFPLGNTPAEFAAQIQAEQARWKTVIEKADIKLQ"
FT   misc_feature    229057..229113
FT                   /note="Signal peptide predicted for BP1208 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 1.000 between residues 19 and 20"
FT   CDS             complement(230029..231408)
FT                   /transl_table=11
FT                   /locus_tag="BP1209"
FT                   /product="probable oxidoreductase"
FT                   /note="Similar to Escherichia coli sulfite reductase
FT                   [NADPH] flavoprotein alpha-component CysJ or B2764
FT                   SW:CYSJ_ECOLI (P38038) (598 aa) fasta scores: E(): 7.2e-14,
FT                   27.01% id in 596 aa, and to Caulobacter crescentus sulfite
FT                   reductase Cc3063 TR:Q9A3Y7 (EMBL:AE005969) (504 aa) fasta
FT                   scores: E(): 1.3e-40, 51.88% id in 503 aa"
FT                   /db_xref="GOA:Q7VYU8"
FT                   /db_xref="HSSP:1J9Z"
FT                   /db_xref="InterPro:IPR001094"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYU8"
FT                   /protein_id="CAE41505.1"
FT                   /translation="MPLPPHPRLLAAAGLVLAWLLLYLWAWRQARMRAASQARALRALE
FT                   ARPGPQTVLVAYASQTGFAAELAEHTAAALASGGLQARVAELGQIDAATLGHYARALFI
FT                   VSTYGEGDPPDAAAPFADTAMQSGAGLGALRYAVLALGDSSYAHFCGFGHRLDDWLRAN
FT                   GAAPLFDLVEVDAGDAAALRHWQHHLGVVTGCTDLPDWQAPAYQAWRLARRTLLNPGSQ
FT                   GAPCYFIELTPPHSTAPQWQAGDIAEIGPRDAPDSPLHAHREYSIASLPADGAVHLLVR
FT                   QMRTADGALGLGSGWLTHTAQTGQAIDLRVRANRNFHPPADARPLILVGNGTGLAGLRA
FT                   LIKARRSAGHGRNWLVFGERSAAHDWFCRDELEQWRGEGWLEYVDAVFSRDAPQRRYVQ
FT                   DLLRDRAERVRDWIREGAAVYVCGSLHGMAEGVHQALADILGPAQLQALQHAGRYRRDV
FT                   Y"
FT   misc_feature    complement(230104..230442)
FT                   /note="HMMPfam hit to PF00175, Oxidoreductase NAD-binding
FT                   domain"
FT   misc_feature    complement(231328..231381)
FT                   /note="1 probable transmembrane helix predicted for BP1209
FT                   by TMHMM2.0 at aa 10-28"
FT   misc_feature    complement(231331..231411)
FT                   /note="Signal peptide predicted for BP1209 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.818) with cleavage site
FT                   probability 0.530 between residues 27 and 28"
FT   CDS             complement(231408..232424)
FT                   /transl_table=11
FT                   /gene="apbE"
FT                   /locus_tag="BP1210"
FT                   /product="thiamine biosynthesis lipoprotein precursor"
FT                   /note="Similar to Salmonella typhimurium thiamine
FT                   biosynthesis lipoprotein ApbE precursor ApbE SW:APBE_SALTY
FT                   (P41780) (350 aa) fasta scores: E(): 3.9e-27, 34.15% id in
FT                   325 aa, and to Caulobacter crescentus thiamine biosynthesis
FT                   protein ApbE, putative Cc3062 TR:Q9A3Y8 (EMBL:AE005969)
FT                   (342 aa) fasta scores: E(): 1.4e-49, 47.02% id in 336 aa"
FT                   /db_xref="GOA:Q7VYU7"
FT                   /db_xref="InterPro:IPR003374"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYU7"
FT                   /protein_id="CAE41506.1"
FT                   /translation="MSMARPPSYAPPLAARLPSAPPRLSGEPVALAGASMGTTWSARLA
FT                   LPPGVTRQQAQAAIAAALDEVVAQMSTWEAGSDISRFNRAATGWQALPEALFHVLSHAL
FT                   DLADASGGAYDPTIGALVDAWGFGAGPRVHEPPAAAAIAAALADCGHGRVRLDAQARRA
FT                   WQPGGVRLDLSSIAKGYGVDRAALALRALGVTACLVEVGGELRAHGVRPDGLPWRVAVE
FT                   VPDASGAHALAVPLRDQSIATSGDYRRYIEQAGRRYAHTLAPRTGKPLDNDLASVTVIH
FT                   PECMLADGLATALGVLGAAAGADYAARHDLAALFILRGAAGHEVRATPAFAALLDRP"
FT   misc_feature    complement(231462..232397)
FT                   /note="HMMPfam hit to PF02424, ApbE family"
FT   CDS             complement(232429..233229)
FT                   /transl_table=11
FT                   /locus_tag="BP1211"
FT                   /product="putative exported protein"
FT                   /note="Similar to Xylella fastidiosa hypothetical protein
FT                   Xf0595 TR:Q9PFR2 (EMBL:AE003905) (267 aa) fasta scores:
FT                   E(): 4e-46, 50.76% id in 260 aa, and to Caulobacter
FT                   crescentus hypothetical protein Cc3061 TR:Q9A3Y9
FT                   (EMBL:AE005969) (247 aa) fasta scores: E(): 7.2e-34, 49.5%
FT                   id in 200 aa"
FT                   /db_xref="InterPro:IPR019613"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYU6"
FT                   /protein_id="CAE41507.1"
FT                   /translation="MKAVAKLAAALTLALPLAAQAHDVWVLPSSTVLSGVDSWITVDAA
FT                   VGNDKFYFNHAPLRLDGLDIIAPDGSAAQAENVSRGKIRSTFDLQLKQNGTYRVAVVND
FT                   GVFARWKEDGKPKRYFGKPEGMAAAVPANAQELEVSQSLGRVETFVTAGKPGAIKPVGK
FT                   GLELVAVSHPNDLYSDEPATFQMLLDGKPAAGLEMEIVPNGSRYRDKVEEIELKTNADG
FT                   KFQVKWPQPGMYWVHTEAEDDKVSVPTATKRRMSYALTLEVLRP"
FT   misc_feature    complement(233167..233229)
FT                   /note="Signal peptide predicted for BP1211 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.999 between residues 21 and 22"
FT   CDS             complement(233259..233774)
FT                   /transl_table=11
FT                   /locus_tag="BP1212"
FT                   /product="putative exported protein"
FT                   /note="Similar to Caulobacter crescentus hypothetical
FT                   protein Cc3060 TR:Q9A3Z0 (EMBL:AE005969) (171 aa) fasta
FT                   scores: E(): 1.3e-34, 55.23% id in 172 aa, and to Xylella
FT                   fastidiosa hypothetical protein Xf0596 TR:Q9PFR1
FT                   (EMBL:AE003905) (174 aa) fasta scores: E(): 1.9e-33, 52.63%
FT                   id in 171 aa"
FT                   /db_xref="InterPro:IPR014469"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYU5"
FT                   /protein_id="CAE41508.1"
FT                   /translation="MRKLLLSVLLAGLVARTAYAADLGLSVEIPRLDVAEYHRPYVAIW
FT                   IEQADQSVAGDLAVWYDVAKKNNEGTEWLKDMRQWWRRSGRNQQFPVDGVSGATRPAGK
FT                   HALSFAGTAKPLADLKPGKYAVVVEAAREVGGRELVRVPFDWPPQQAQQLTARGEHELG
FT                   AIAVDLKP"
FT   misc_feature    complement(233715..233774)
FT                   /note="Signal peptide predicted for BP1212 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 1.000 between residues 20 and 21"
FT   CDS             complement(233797..234426)
FT                   /transl_table=11
FT                   /locus_tag="BP1213"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Caulobacter crescentus hypothetical
FT                   protein Cc3059 TR:Q9A3Z1 (EMBL:AE005969) (209 aa) fasta
FT                   scores: E(): 2.7e-43, 55.92% id in 211 aa, and to Xylella
FT                   fastidiosa hypothetical protein Xf0597 TR:Q9PFR0
FT                   (EMBL:AE003905) (218 aa) fasta scores: E(): 7.7e-45, 56.73%
FT                   id in 208 aa"
FT                   /db_xref="InterPro:IPR005625"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYU4"
FT                   /protein_id="CAE41509.1"
FT                   /translation="MDGKTSSKRRAYWLKTLHQWHWISSALCLLGMLLFAVTGLTLNNA
FT                   SHIESRARVDTRHLELPAPLRAELAAAAPARPALPPALLEWLDRELDVDARGAAAKPEW
FT                   SPDELYVSLPRPGGDAWLSIDLQSGELEYERTDRGWIAYLNDLHKGRHTGLAWSWFLDI
FT                   FAVACLVFSLTGLVLLKMHAGNRAATWPMVGLGVVIPVVLALLFIH"
FT   misc_feature    complement(join(233803..233868,233890..233955,
FT                   234301..234366))
FT                   /note="3 probable transmembrane helices predicted for
FT                   BP1213 by TMHMM2.0 at aa 20-42, 157-179 and 186-208"
FT   misc_feature    complement(234319..234426)
FT                   /note="Signal peptide predicted for BP1213 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.988) with cleavage site
FT                   probability 0.364 between residues 36 and 37"
FT   CDS             234573..235520
FT                   /transl_table=11
FT                   /gene="nodI"
FT                   /locus_tag="BP1214"
FT                   /product="ABC, transporter, ATP-binding protein"
FT                   /note="Similar to Rhizobium loti nodulation ATP-binding
FT                   protein I NodI or Mlr6164 SW:NODI_RHILO (P23703) (340 aa)
FT                   fasta scores: E(): 3.7e-62, 63.14% id in 312 aa, and to
FT                   Rhizobium tropici NodI TR:AAL02416 (EMBL:AY029295) (304 aa)
FT                   fasta scores: E(): 6.2e-63, 63.33% id in 300 aa"
FT                   /db_xref="GOA:Q7VYU3"
FT                   /db_xref="HSSP:1G9X"
FT                   /db_xref="InterPro:IPR005978"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYU3"
FT                   /protein_id="CAE41510.1"
FT                   /translation="MSSNPVSASCAPVLQVHGLTKRYGERVIVDGLSFALRRGECYGLL
FT                   GPNGAGKTTTLRALLGLTPFDDGAVEVLGHAVPAQARQARARLGVVPQLDNLDPDFTVA
FT                   ENLLVFGRYFGLSDAQVRARLPQLLAFAALAAKADARIGELSGGMKRRLTLARALINDP
FT                   DLIIMDEPTTGLDPQARHLIWERLKALLARGKTILLTTHFMDEAERLCHRLGVIDHGRL
FT                   ITEGAPRALIERCLEPQVVEVYGDDLHAWLAAHRAALPARVEVSGETAFCHTDDATPVV
FT                   QALQGWPDLRYLHRPANLEDLFLRLTGRGMREDA"
FT   misc_feature    234687..235232
FT                   /note="HMMPfam hit to PF00005, ABC transporter"
FT   misc_feature    234708..234731
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   misc_feature    235005..235049
FT                   /note="ScanRegExp hit to PS00211, ABC transporters family
FT                   signature. Confirmed by InterPro eMOTIF pattern match."
FT   misc_feature    235137..235160
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   CDS             235517..236302
FT                   /transl_table=11
FT                   /gene="nodJ"
FT                   /locus_tag="BP1215"
FT                   /product="ABC transporter, permease protein"
FT                   /note="Similar to Rhizobium sp nodulation protein J NodJ or
FT                   Y4hE SW:NODJ_RHISN (P55475) (262 aa) fasta scores: E():
FT                   2.2e-39, 42.3% id in 260 aa, and to Bradyrhizobium spWM9
FT                   probable nodulation ABC transporter permease nodJ TR:Q9AQ19
FT                   (EMBL:AF222753) (261 aa) fasta scores: E(): 3.8e-39, 44.7%
FT                   id in 255 aa"
FT                   /db_xref="GOA:Q7VYU2"
FT                   /db_xref="InterPro:IPR013526"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYU2"
FT                   /protein_id="CAE41511.1"
FT                   /translation="MSAGAWGWPPLTRRCVAVLRRNFLVWRKTALTTVLGDVLDPVVAL
FT                   LALGFGLGALLPGIEGVPYVTFLSAGSMCVGALYGATFEATYNAFSRLHVQRTWDAMLS
FT                   TPLDLDDVVWAEILWAAAKALKSGIAILLVVVALDIARAPTLLWVPPVLALAGLAFASM
FT                   ALVVSALARGYEFFMYYFTLGVTPMVFLSGVFFPASQLPAALAGPLQWLPVAPAVNLIR
FT                   PLTLGQVPHAWWADVAQLAVTAALGIWLVAVLMRRRLLR"
FT   misc_feature    235574..236293
FT                   /note="HMMPfam hit to PF01061, ABC-2 type transporter"
FT   misc_feature    join(235616..235684,235697..235765,235955..236023,
FT                   236042..236110,236210..236278)
FT                   /note="5 probable transmembrane helices predicted for
FT                   BP1215 by TMHMM2.0 at aa 34-56, 61-83, 147-169, 176-198 and
FT                   232-254"
FT   CDS             236391..236951
FT                   /transl_table=11
FT                   /locus_tag="BP1216"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein Pa5409 TR:Q9HTF5 (EMBL:AE004953) (186 aa) fasta
FT                   scores: E(): 1.1e-33, 55.3% id in 179 aa, and to Rhizobium
FT                   loti Mll6732 protein Mll6732 TR:Q988I2 (EMBL:AP003010) (200
FT                   aa) fasta scores: E(): 0.00082, 25.59% id in 168 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYU1"
FT                   /protein_id="CAE41512.1"
FT                   /translation="MVTDAVLNHAGREWGWVALRGVVAVLFGLMAVLMPGITLSALVLV
FT                   WGAFALADGIFALVAGWRIRDQDKPLWPLILVGLTGIAAGIATFAWPGLTALVLLYIIA
FT                   FWAVIGGVFQIAAAIRFRKDIENEWLHGLSGALSIVFGALLLFQPGAGALALVWVIGVY
FT                   AVLFGVLLLALAFRLKNHVATPA"
FT   misc_feature    join(236436..236504,236514..236582,236601..236660,
FT                   236670..236738,236775..236843,236856..236924)
FT                   /note="6 probable transmembrane helices predicted for
FT                   BP1216 by TMHMM2.0 at aa 16-38, 42-64, 71-90, 94-116,
FT                   129-151 and 156-178"
FT   CDS             236961..237347
FT                   /transl_table=11
FT                   /locus_tag="BP1217"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Escherichia coli protein CrcB or B0624
FT                   SW:CRCB_ECOLI (P37002) (127 aa) fasta scores: E(): 1.6e-10,
FT                   42.6% id in 115 aa, and to Pseudomonas syringae
FT                   pvmaculicola hypothetical 13.3 kDa protein TR:AAK49548
FT                   (EMBL:AF359557) (127 aa) fasta scores: E(): 6.5e-17, 49.18%
FT                   id in 122 aa"
FT                   /db_xref="GOA:Q7VYU0"
FT                   /db_xref="InterPro:IPR003691"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VYU0"
FT                   /protein_id="CAE41513.1"
FT                   /translation="MLTYAPLNFIAIGIGATLGAWLRWVLGLRLNGAGWPWGTLTANLV
FT                   GGYLIGVMVALIASHPEWPAWIRLAAVTGFLGGLTTFSTFSAETVDMLERGVYATAAAY
FT                   AGASLAGSLAMTGLGLATVRLLLR"
FT   misc_feature    join(236979..237035,237063..237131,237150..237218,
FT                   237261..237329)
FT                   /note="4 probable transmembrane helices predicted for
FT                   BP1217 by TMHMM2.0 at aa 7-25, 35-57, 64-86 and 101-123"
FT   misc_feature    236985..237329
FT                   /note="HMMPfam hit to PF02537, CrcB-like protein"
FT   CDS             complement(237370..238701)
FT                   /transl_table=11
FT                   /locus_tag="BP1218"
FT                   /product="putative exported protein"
FT                   /note="Similar to Zymomonas mobilis shc hpnE TR:Q56996
FT                   (EMBL:X80766) (414 aa) fasta scores: E(): 4.8e-06, 25.87%
FT                   id in 456 aa, and to Neisseria meningitidis putative
FT                   oxidoreductase Nma1338 TR:Q9JUF6 (EMBL:AL162755) (437 aa)
FT                   fasta scores: E(): 5.1e-33, 38.92% id in 447 aa"
FT                   /db_xref="GOA:Q7VYT9"
FT                   /db_xref="InterPro:IPR002937"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYT9"
FT                   /protein_id="CAE41514.1"
FT                   /translation="MKVAVIGAGWAGLAASVALREADAKVTVFEAGRTPGGRARRVVHP
FT                   EFGDDLDNGQHILLGAYGETLALMRRLGRNPDALLMRRPLRLASLDGGFRLSAPPLPAP
FT                   LHAAAALLLARGLPWRSRVAAVRLMHYLRQMQWQAPRDWTVTQLLDHTRQPAGIRQSVW
FT                   APLCLAALNTPPAQASALLYAHILRDSLTGHRRNSDLLLPYADLSALWPDVAARQATMR
FT                   YGNTVRRLTPQTHSVEVNGERFDAAVLAVSPQVAARLLEHALAEQGSGGLLRALQAFDY
FT                   EPIATLNLRLAGPWPLPEPMMMLREEPARGFHGQWLFDRSRLTGRGERGELAVVVSAAR
FT                   AVAAADREQAIAALTRQVAEQARRHPARLAPMPAVEIAELFVEKRATFAAMPGLARPLN
FT                   STPWRSLALAGDWTDTGYPGVLEGAVRSGLQAARVVLGGAATPD"
FT   misc_feature    complement(238642..238701)
FT                   /note="Signal peptide predicted for BP1218 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.851) with cleavage site
FT                   probability 0.458 between residues 20 and 21"
FT   CDS             complement(238698..239561)
FT                   /transl_table=11
FT                   /locus_tag="BP1219"
FT                   /product="putative phytoene synthase"
FT                   /note="Similar to Narcissus pseudonarcissus phytoene
FT                   synthase precursor Psy SW:PSY_NARPS (P53797) (423 aa) fasta
FT                   scores: E(): 8.1e-29, 32.72% id in 275 aa, and to Neisseria
FT                   meningitidis phytoene synthase, putative Nmb1168 or Nmb1130
FT                   TR:Q9JRU9 (EMBL:AE002465) (290 aa) fasta scores: E():
FT                   3.7e-54, 51.43% id in 278 aa"
FT                   /db_xref="GOA:Q7VYT8"
FT                   /db_xref="InterPro:IPR002060"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYT8"
FT                   /protein_id="CAE41515.1"
FT                   /translation="MTPDEYCQEKAAKSGSSFYYSFLFLPPARRRAITALYAFCREVDD
FT                   VVDECSDPSLARVKLAWWRTQVDQMVDGKPDHPVTRALQPHLADCNITRERLLAVIDGM
FT                   EMDLDQTRYLDWPGLRKYCWHVAGVVGELSAGVFGYQDARTLDYAGKLGLAFQLTNIIR
FT                   DVGDDARRGRIYLPVNELQQFEVKAADILNGVHSERFSALMRFQAERTRGLYREAMQAL
FT                   PETDRRAQRPGLMMAAIYHALLDEIERDDWQVLHQRISLTPVRKLWLAWKTWVSGGAPL
FT                   VRRLAR"
FT   misc_feature    complement(238725..239531)
FT                   /note="HMMPfam hit to PF00494, Squalene/phytoene synthase"
FT   misc_feature    complement(239031..239108)
FT                   /note="ScanRegExp hit to PS01045, Squalene and phytoene
FT                   synthases signature 2. Confirmed by InterPro eMOTIF pattern
FT                   match."
FT   misc_feature    complement(239151..239198)
FT                   /note="ScanRegExp hit to PS01044, Squalene and phytoene
FT                   synthases signature 1."
FT   CDS             complement(239563..240393)
FT                   /transl_table=11
FT                   /locus_tag="BP1220"
FT                   /product="putative phytoene synthase"
FT                   /note="Similar to Streptomyces griseus phytoene synthase
FT                   CrtB or CrtI SW:CRTB_STRGR (P54977) (342 aa) fasta scores:
FT                   E(): 2.4e-14, 34.57% id in 269 aa, and to Neisseria
FT                   meningitidis putative transferase Nma1721 TR:Q9JTL7
FT                   (EMBL:AL162756) (276 aa) fasta scores: E(): 1.9e-49, 50.54%
FT                   id in 275 aa"
FT                   /db_xref="GOA:Q7VYT7"
FT                   /db_xref="InterPro:IPR002060"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYT7"
FT                   /protein_id="CAE41516.1"
FT                   /translation="MAIDHYENFPVASLLLPRRLRGAVTDIYRFARAADDIADEGAAED
FT                   AERLRQLAAFRAELHRIGAEPGTLAVPASADLAPIFTPLAATIARHQLPITPFFDLLSA
FT                   FEQDISVKRYESHDDLLDYCRRSANPVGRLMLHLYGAVDEANLRDADAICTGLQLVNFW
FT                   QDVRIDWRKQRVYLPEEDLRRHGVSRDDLAACRLTPQWRELMAFEVQRTRALLHSGAAL
FT                   PRRLPGRIGLELRLVVQGGLRILQRIEDAGYDVFMNRPELGAKDWAVMLWRAFT"
FT   misc_feature    complement(239731..240363)
FT                   /note="HMMPfam hit to PF00494, Squalene/phytoene synthase"
FT   CDS             240522..241649
FT                   /transl_table=11
FT                   /gene="dadX"
FT                   /gene_synonym="dadB"
FT                   /gene_synonym="alnB"
FT                   /locus_tag="BP1221"
FT                   /product="alanine racemase, catabolic"
FT                   /EC_number="5.1.1.1"
FT                   /note="Similar to Escherichia coli alanine racemase,
FT                   catabolic DadX or DadB or AlnB or B1190 SW:ALR2_ECOLI
FT                   (P29012) (356 aa) fasta scores: E(): 7.2e-61, 51.88% id in
FT                   372 aa, and to Salmonella typhimurium alanine racemase,
FT                   catabolic DadB SW:ALR2_SALTY (P06191) (356 aa) fasta
FT                   scores: E(): 1.3e-62, 52.81% id in 373 aa. Also similar to
FT                   BP2228, 41.398% identity (42.659% ungapped) in 372 aa
FT                   overlap."
FT                   /db_xref="GOA:Q7VYT6"
FT                   /db_xref="HSSP:1NIU"
FT                   /db_xref="InterPro:IPR000821"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYT6"
FT                   /protein_id="CAE41517.1"
FT                   /translation="MPRPIFASISQSALRHNLATVRRHLDDVAAKADGTPPSIWAVIKA
FT                   NAYGHGIEQAVAGFSAAQGLAMLDLQEAVRCREAGWGGPILLLEGFFQPSDLEIVDRYH
FT                   LATTVHTREQFDMLAHARLSRRVDIMVKLNSGMNRLGFAPDAYGSAYARAQQLHEYGVV
FT                   GGIGKMTHFACADGPQGVTQQMNVFNGATAHLAGATSVCNSAATLRYADLAVGHDGQTH
FT                   WVRPGICLYGASPFADAQAGAFGLIPAMTLRSELIAIQDIPAGAAVGYGAIFRADRPMR
FT                   IGVVACGYADGYPRHAGTGTPLTVGGVRTRLVGRVSMDMLMVDLDPVPAAGIGTPVVLW
FT                   GEDGPSVDEVAEAAGTIGYELLCALAPRVPVRHEG"
FT   misc_feature    240633..241634
FT                   /note="HMMPfam hit to PF00842, Alanine racemase"
FT   misc_feature    240642..240674
FT                   /note="ScanRegExp hit to PS00395, Alanine racemase
FT                   pyridoxal-phosphate attachment site."
FT   CDS             241801..242517
FT                   /transl_table=11
FT                   /locus_tag="BP1222"
FT                   /product="probable short-chain dehydrogenase"
FT                   /note="Similar to Streptococcus agalactiae CylG TR:Q9X429
FT                   (EMBL:AF093787) (240 aa) fasta scores: E(): 1e-20, 34.16%
FT                   id in 240 aa, and to Pseudomonas aeruginosa probable
FT                   short-chain dehydrogenase Pa4162 TR:Q9HWL9 (EMBL:AE004832)
FT                   (238 aa) fasta scores: E(): 2.6e-52, 61.53% id in 234 aa"
FT                   /db_xref="GOA:Q7VYT5"
FT                   /db_xref="HSSP:1AE1"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYT5"
FT                   /protein_id="CAE41518.1"
FT                   /translation="MKDKCVLVTGATKGIGWALTQRLTDLGCHVVGIARNTADVDFPGY
FT                   LYACDLADAGRTEEVLREIRDKFPVDAVVNNVGIVAPQALGEIDLATLYSVLDLNVRVA
FT                   VQVTQTFVESMKVRRSGRIVNICSRAILGAYDRTSYSAAKSALVGCTRTWALELAEYGV
FT                   TVNAVAPGPVETELFRRGHPAGSDAEKRAQASIPMKRFGTPAEVAAAVAFLLSDDAGFI
FT                   TGQVLGVDGGGSLGGH"
FT   misc_feature    241810..242328
FT                   /note="HMMPfam hit to PF00106, short chain dehydrogenase"
FT   misc_feature    242395..242487
FT                   /note="HMMPfam hit to PF00678,"
FT   CDS             complement(242531..243223)
FT                   /transl_table=11
FT                   /locus_tag="BP1223"
FT                   /product="putative membrane protein"
FT                   /note="no significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYT4"
FT                   /protein_id="CAE41519.1"
FT                   /translation="MNPHLPPDDDDRDLRALYRELPRHEPDIMLDASIREQAQRAAEAD
FT                   RRARRPRATWHPAWAVAACVVAVSALFVFTDLEQYALQPAAEVELQAEQEAAQATRDAV
FT                   PEPPAPDPALAAPPPLGALAPEAARGAAAESSAQDAAPARRGYMPQRAAPAVRAEKQQQ
FT                   ENLAASARQRDDPAYAQRVERIRALVREGKPQEAAAEVLAWRRAAPGLALPPDLEQLAP
FT                   ADGGTPGQ"
FT   misc_feature    complement(243002..243058)
FT                   /note="1 probable transmembrane helix predicted for BP1223
FT                   by TMHMM2.0 at aa 55-74"
FT   repeat_region   243227..243258
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   repeat_region   243227..244279
FT   CDS             243329..244279
FT                   /transl_table=11
FT                   /locus_tag="BP1224"
FT                   /product="transposase"
FT                   /note="transposase for IS481 element"
FT                   /db_xref="GOA:Q84CT8"
FT                   /db_xref="InterPro:IPR001584"
FT                   /db_xref="UniProtKB/TrEMBL:Q84CT8"
FT                   /protein_id="CAE41520.1"
FT                   /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW
FT                   LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS
FT                   RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG
FT                   AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF
FT                   RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS
FT                   WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT"
FT   misc_feature    243587..243652
FT                   /note="Predicted helix-turn-helix motif with score 2406
FT                   (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA"
FT   misc_feature    243710..244243
FT                   /note="HMMPfam hit to PF00665, Integrase core domain"
FT   repeat_region   complement(244248..244279)
FT                   /rpt_type=INVERTED
FT                   /note="Inverted repeat for IS481 element"
FT   CDS             complement(244276..244854)
FT                   /transl_table=11
FT                   /locus_tag="BP1225"
FT                   /product="putative Ecf-type RNA polymerase sigma factor"
FT                   /note="Similar to Pseudomonas aeruginosa putative RNA
FT                   polymerase sigma factor Pa2896 TR:Q9HZV1 (EMBL:AE004716)
FT                   (194 aa) fasta scores: E(): 8.5e-19, 43.15% id in 190 aa,
FT                   and to Rhizobium loti RNA polymerase Ecf-type sigma factor
FT                   Mll8140 TR:Q983W6 (EMBL:AP003013) (208 aa) fasta scores:
FT                   E(): 1.3e-10, 33.33% id in 171 aa"
FT                   /db_xref="GOA:Q7VYT3"
FT                   /db_xref="InterPro:IPR007630"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYT3"
FT                   /protein_id="CAE41521.1"
FT                   /translation="MDTASAADEALMLAYGAEGDMDAFDALYARHRAGLYRYILRSARN
FT                   AAQADDIFQETWSRVIDARARYRPQARFTTWLLQIAHNLLVDAHRRQPAPVAPEQAEAA
FT                   LASVPAAEHEQPEARLSEFQQRRRLQLAIERLPDEQRLAMLLRLEHDLDVEEIAQVTGV
FT                   SRETVKSRLRYATRRIREELSSESAPRSP"
FT   misc_feature    complement(244336..244401)
FT                   /note="Predicted helix-turn-helix motif with score 1360
FT                   (+3.82 SD) at aa 176-197, sequence LDVEEIAQVTGVSRETVKSRLR"
FT   misc_feature    complement(244579..244746)
FT                   /note="HMMPfam hit to PF00776, Sigma-70 factor (ECF
FT                   subfamily)"
FT   CDS             complement(join(244932..246623,246623..246646))
FT                   /pseudo
FT                   /transl_table=11
FT                   /locus_tag="BP1226"
FT                   /product="putative exported protein (pseudogene)"
FT                   /note="Pseudogene. This CDS appears to have a frameshift
FT                   mutation following codon 8. The frameshift occurs within a
FT                   polymeric tract of (C)5.Similar to Escherichia coli
FT                   hypothetical protein YfbK or b2270 SWALL:YFBK_ECOLI
FT                   (SWALL:P76481) (575 aa) fasta scores: E(): 8.8e-71, 45.02%
FT                   id in 573 aa, and to Xanthomonas campestris hypothetical
FT                   protein Xcc2915 SWALL:AAM42187 (EMBL:AE012405) (618 aa)
FT                   fasta scores: E(): 9.3e-78, 51.05% id in 568 aa"
FT                   /db_xref="PSEUDO:CAE41522.1"
FT   misc_feature    complement(245496..246020)
FT                   /note="HMMPfam hit to PF00092, von Willebrand factor type A
FT                   domain"
FT   variation       complement(246620..246624)
FT                   /note="(C)5 in pertussis; (C)6 in parapertussis and
FT                   bronchiseptica"
FT   CDS             246773..248134
FT                   /transl_table=11
FT                   /gene="radA"
FT                   /gene_synonym="sms"
FT                   /locus_tag="BP1227"
FT                   /product="DNA repair protein"
FT                   /note="Similar to Escherichia coli DNA repair protein RadA
FT                   or Sms or B4389 SW:RADA_ECOLI (P24554) (460 aa) fasta
FT                   scores: E(): 3.3e-91, 57.93% id in 454 aa, and to Neisseria
FT                   meningitidis putative DNA repair protein RadA or Nma0992
FT                   TR:Q9JV51 (EMBL:AL162754) (459 aa) fasta scores: E():
FT                   4.2e-109, 66.08% id in 457 aa"
FT                   /db_xref="GOA:Q7VYT2"
FT                   /db_xref="InterPro:IPR003593"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYT2"
FT                   /protein_id="CAE41523.1"
FT                   /translation="MAKSRTIYVCAECGGTSLKWQGKCPHCSAWNTLEETVESAAPSAG
FT                   GHRYAPLAAASPVRSLSEIEARETPRQPTGLDEFDRVLGGGLVAGAVVLIGGDPGIGKS
FT                   TLLLQALASLSATTKVLYVTGEESAEQVALRARRLGLQTGNVDLLAEIRLEAIQAAVSE
FT                   QKPTVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGAL
FT                   AGPRVLEHIVDTVLYFEGDTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSAL
FT                   FLSQHQQQVAGSCVLATQEGTRPLLVEVQALVDTSHAPNPRRLTVGLEGNRLAMLLAVM
FT                   HRHAGVSTYDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDKPLPAGLVAFGEIGLAG
FT                   EIRPAPRGQERLREAAKLGFSVALIPKANAPRQPIEGLEIWAVDRLDAALDKLR"
FT   misc_feature    247061..247084
FT                   /note="ScanRegExp hit to PS00017, ATP/GTP-binding site
FT                   motif A (P-loop)."
FT   CDS             248157..248930
FT                   /transl_table=11
FT                   /locus_tag="BP1228"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein Pa2847 TR:Q9HZZ6 (EMBL:AE004711) (249 aa) fasta
FT                   scores: E(): 2.8e-32, 45.45% id in 242 aa, and to
FT                   Streptomyces coelicolor hypothetical 26.0 kDa protein
FT                   Sc7a8.24C TR:Q9L2D4 (EMBL:AL137187) (260 aa) fasta scores:
FT                   E(): 8.7e-10, 29.8% id in 255 aa"
FT                   /db_xref="GOA:Q7VYT1"
FT                   /db_xref="InterPro:IPR002781"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYT1"
FT                   /protein_id="CAE41524.1"
FT                   /translation="MSLLVIAACLASGALIGFMGGALGIGGGLIAIPALGLLLGMPQQL
FT                   AQGTALIMVLPTIMMAVRKYHQHARIDMRVAGAGAAGAVVFTWVGAQLALGIASRTLRL
FT                   SFAVFLFFIALFYVYQTVRKRAAAAPAAPARPAPVLSPPRASVLGVLCGTLGGFFGVGG
FT                   AVLAVPIITSVFRLPQTMAQALALTMVIPGSMIALVTYTWAGQADWWIGVPLAAGSLVF
FT                   VPVGVRLAYRLPERKLRACFAAMLFATVALLIFEA"
FT   misc_feature    248157..248228
FT                   /note="Signal peptide predicted for BP1228 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 0.997) with cleavage site
FT                   probability 0.676 between residues 24 and 25"
FT   misc_feature    join(248193..248261,248289..248342,248379..248447,
FT                   248460..248513,248700..248768,248781..248849,
FT                   248868..248921)
FT                   /note="7 probable transmembrane helices predicted for
FT                   BP1228 by TMHMM2.0 at aa 13-35, 45-62, 75-97, 102-119,
FT                   182-204, 209-231 and 238-255"
FT   misc_feature    248421..248918
FT                   /note="HMMPfam hit to PF01925, Domain of unknown function
FT                   DUF81"
FT   CDS             249089..249316
FT                   /transl_table=11
FT                   /locus_tag="BP1229"
FT                   /product="putative exported protein"
FT                   /note="no significant database matches"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYT0"
FT                   /protein_id="CAE41525.1"
FT                   /translation="MTTQSRIAAFLSTSALCLGLAAAPSAYAAQSDAQSGAKSSVKAPS
FT                   GGKHAKSEKHAKSGAHHGAHHAKTGSTSTK"
FT   misc_feature    249089..249154
FT                   /note="Signal peptide predicted for BP1229 by SignalP 2.0
FT                   HMM (Signal peptide probabilty 1.000) with cleavage site
FT                   probability 0.994 between residues 28 and 29"
FT   CDS             complement(249390..250796)
FT                   /transl_table=11
FT                   /gene="norM"
FT                   /locus_tag="BP1230"
FT                   /product="multidrug resistance protein"
FT                   /note="Similar to Escherichia coli multidrug resistance
FT                   protein NorM or B1663 SW:NORM_ECOLI (P37340) (457 aa) fasta
FT                   scores: E(): 1.2e-33, 32% id in 450 aa, and to Neisseria
FT                   meningitidis probable multidrug resistance protein NorM or
FT                   Nmb0812 SW:NORM_NEIMB (Q9K015) (459 aa) fasta scores: E():
FT                   3e-46, 35.21% id in 443 aa"
FT                   /db_xref="GOA:Q7VYS9"
FT                   /db_xref="InterPro:IPR002528"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYS9"
FT                   /protein_id="CAE41526.1"
FT                   /translation="MTPAAAPSPGFGATMRDIARQAWPVLISQWAGISFGVLDTAMTGH
FT                   ASPQDLAAMSLSVSVYITVFVGLMGVVHALIPILAQHFGAGQQREVGSTWGQGVWLALG
FT                   LSVVGAILMLFPDAWLSLSGDVDPAVRDRVAAYLRALVLALPATLVFRTIYALGTAVSR
FT                   PKVVMSINLAAVFVKAFCNWVLIYGKFGLPALGAVGAGLATAISGWLSLAAGLWIITHD
FT                   RYYRRFRLRVGRPDWRALKELLRLGLPMGGSYLVEVSAFTFMALLVAREGTYVSGGHQI
FT                   MSNLAALCYMMPMALGVATAALTAQAIGAGRPDLAHRTGMAGLALGLLGAALTAAVLLV
FT                   GRPLIIAAYTDDLEVAAVAASLLAIIPLFHLCDSMQCINSYLLRAHKVAVMPLVLQTVA
FT                   LGGVGLLGGWWLGFGPGRGGLDPLRTALMPGSPAGAGTMWLMAMAGLGLSAVLLHYWYR
FT                   RIARLALARG"
FT   misc_feature    complement(join(249426..249491,249552..249617,
FT                   249681..249731,249762..249827,249888..249953,
FT                   249999..250064,250140..250205,250236..250286,
FT                   250326..250391,250452..250517,250557..250622,
FT                   250668..250733))
FT                   /note="12 probable transmembrane helices predicted for
FT                   BP1230 by TMHMM2.0 at aa 21-43, 58-80, 93-115, 135-157,
FT                   170-187, 197-219, 244-266, 281-303, 323-345, 355-372,
FT                   393-415 and 435-457"
FT   misc_feature    complement(249567..250055)
FT                   /note="HMMPfam hit to PF01554, Uncharacterized membrane
FT                   protein family UPF0013"
FT   misc_feature    complement(250245..250730)
FT                   /note="HMMPfam hit to PF01554, Uncharacterized membrane
FT                   protein family UPF0013"
FT   misc_feature    complement(250587..250604)
FT                   /note="ScanRegExp hit to PS00267, Tachykinin family
FT                   signature."
FT   CDS             complement(250793..252529)
FT                   /transl_table=11
FT                   /locus_tag="BP1231"
FT                   /product="putative membrane protein"
FT                   /note="Similar to Neisseria meningitidis putative inner
FT                   membrane protein Nma0497 TR:Q9JW86 (EMBL:AL162753) (558 aa)
FT                   fasta scores: E(): 2.5e-18, 26.04% id in 599 aa, and to
FT                   Xylella fastidiosa hypothetical protein Xf0929 TR:Q9PEU9
FT                   (EMBL:AE003932) (583 aa) fasta scores: E(): 2.8e-06, 27.3%
FT                   id in 498 aa"
FT                   /db_xref="UniProtKB/TrEMBL:Q7VYS8"
FT                   /protein_id="CAE41527.1"
FT                   /translation="MSPISRSTPARLTVQATAKLPRLVLLGLSLIYIVAGLFMRDPWKT
FT                   DDVVGLATMVTALREGGMTWLLPQVGHLAHAEEGPMITWVGGASMWLFGPWLGDITAGR
FT                   LPNLLWFGIATVSVWYGTYLLGRRAEAQPLKLPFGGEPAARDYGRMLADAALLLLLATV
FT                   GILQRLHETSVVPAIMAWQALAFYAMARTLDRPFLGATTLGVAVAGAFLTRGWIGAAPV
FT                   MVAAVLAFYPRSLLWQRVRWLPWAALIAAALMLAWWLPATLAEGSDYWIRNWKTWTLAS
FT                   YDWPDLRITGRTLRDLPWYLWPTWPLALLAIWRWRAWLYAPHIWVPLVLAATAALMLLF
FT                   LDGPNDAEYAMLAVPCAILGAFSLPTLRRGVVNTLDWFAVMCFSLTAATAWLGWVALHF
FT                   GWPAQISRNIARQTTGYEASISWLASALALVISAAWVVLVVWRLRSRPLALWRGTVLSA
FT                   GGLTATWILLVLLWQPAVDYARSYRTVSGQLAEALQANLQPGECMRGLSLGSGQRASFL
FT                   VFDNMSFTYDSKCTLVLQQTTHSSLRDGTAAYSDGATELWRGGRRADRHEVFRLLRVTP
FT                   TR"
FT   misc_feature    complement(join(251111..251176,251207..251272,
FT                   251333..251398,251429..251485,251507..251572,
FT                   251738..251803,251843..251908,251954..252010,
FT                   252032..252088,252149..252214,252236..252286,
FT                   252413..252469))
FT                   /note="12 probable transmembrane helices predicted for
FT                   BP1231 by TMHMM2.0 at aa 20-39, 81-98, 105-127, 147-166,
FT                   173-192, 207-229, 242-264, 319-341, 348-367, 377-399,
FT                   419-441 and 451-473"
FT   CDS             complement(252645..252911)
FT                   /transl_table=11
FT                   /locus_tag="BP1232"
FT                   /product="50S ribosomal protein L31"
FT                   /note="Similar to Xylella fastidiosa 50S ribosomal protein
FT                   L31 Xf1534 TR:Q9PD45 (EMBL:AE003983) (80 aa) fasta scores:
FT                   E(): 2.4e-14, 53.75% id in 80 aa, and to Streptococcus
FT                   pneumoniae R6 50S ribosomal protein L31 rpmE TR:AAK99980
FT                   (EMBL:AE008490) (80 aa) fasta scores: E(): 2.9e-14, 51.94%
FT                   id in 77 aa"
FT                   /db_xref="GOA:Q7VYS7"
FT                   /db_xref="InterPro:IPR002150"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VYS7"
FT                   /protein_id="CAE41528.1"
FT                   /translation="MKEGIHPEYREVVFMDVQTGNKFVTRSTIHTRETVEIDGKTYPLF
FT                   KCDVTSESHPFYTGAQTRIVETGRVEKFRARFARTAGTVKSAS"
FT   misc_feature    complement(252672..252911)
FT                   /note="HMMPfam hit to PF01197, Ribosomal protein L31"
FT   misc_feature    complement(252696..252752)
FT                   /note="ScanRegExp hit to PS01143, Ribosomal protein L31
FT                   signature. Confirmed by InterPro eMOTIF pattern match."
FT   CDS             complement(253080..253934)
FT                   /transl_table=11
FT                   /locus_tag="BP1233"
FT                   /product="putative tryptophan oxygenase"
FT                   /note="Similar to Anopheles gambiae tryptophan oxygenase To
FT                   TR:O77457 (EMBL:L76433) (392 aa) fasta scores: E():
FT                   1.3e-09, 31.32% id in 332 aa, and to Pseudomonas aeruginosa
FT                   hypothetical protein Pa2579 pa2579 TR:Q9I0Q7
FT                   (EMBL:AE004686) (288 aa) fasta scores: E(): 3.9e-70, 62.84%
FT                   id in 288 aa"
FT                   /db_xref="GOA:Q7VYS6"
FT                   /db_xref="InterPro:IPR004981"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q7VYS6"
FT                   /protein_id="CAE41529.1"
FT                   /translation="MQPTPTQRPEAIVHDEKAQLDFARDMSYGDYLHLDELLGAQHPLS
FT                   PEHNEMLFIVQHQTSELWMKLMLHELRAAIAAIQQDRLQPAFKMLARVSKILEQLVSAW
FT                   DVLATMTPPEYSALRPYLAHSSGFQSYQYRQIEYLLGNKNAAMLQPHAHRADLLAQVRA
FT                   AFEAPSLYDEALRFLARSGLAVPAGALQRDWTQPYRADDQVEQAWLTVYRQSERYWNQY
FT                   QLGEKLTDLEDAFRLWRFRHVTTVERIIGFKRGTGGTSGVTYLRKMLEVVLFPEIWKLR
FT                   TDL"
FT   misc_feature    complement(253179..253208)
FT                   /note="ScanRegExp hit to PS00339, Aminoacyl-transfer RNA
FT                   synthetases class-II signature 2."
FT   CDS             complement(253962..254591)
FT                   /transl_table=11
FT                   /locus_tag="BP1234"
FT                   /product="conserved hypothetical protein"
FT                   /note="Similar to Pseudomonas aeruginosa hypothetical
FT                   protein Pa2081 TR:Q9I234 (EMBL:AE004635) (213 aa) fasta
FT                   scores: E(): 3.2e-46, 58.25% id in 206 aa, and to
FT                   Synechocystis sp hypothetical 23.8 kDa protein Slr2121
FT                   TR:P73988 (EMBL:D90911) (215 aa) fasta scores: E():
FT                   9.2e-14, 31.62% i