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EBI DbfetchID BX640413; SV 1; linear; genomic DNA; STD; PRO; 349028 BP. XX AC BX640413; XX DT 09-AUG-2003 (Rel. 76, Created) DT 23-OCT-2008 (Rel. 97, Last updated, Version 8) XX DE Bordetella pertussis strain Tohama I, complete genome; segment 3/12 XX KW complete genome. XX OS Bordetella pertussis OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Bordetella. XX RN [2] RP 1-349028 RA Sebaihia M.; RT ; RL Submitted (06-AUG-2003) to the EMBL/GenBank/DDBJ databases. RL Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute, RL Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail: RL ms5@sanger.ac.uk XX RN [3] RA Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E., RA Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., RA Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A., RA Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I., RA Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., RA Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., RA Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., RA Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., RA Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., RA Barrell B.G., Maskell D.J.; RT "Comparative analysis of the genome sequences of Bordetella pertussis, RT Bordetella parapertussis and Bordetella bronchiseptica"; RL Nat. Genet. 35(1):0-0(2003). XX DR EMBL-CON; BX470248. DR RFAM; RF00023; tmRNA. XX FH Key Location/Qualifiers FH FT source 1..349028 FT /organism="Bordetella pertussis" FT /strain="Tohama I" FT /mol_type="genomic DNA" FT /db_xref="taxon:520" FT CDS 86..1168 FT /transl_table=11 FT /gene="prfA" FT /gene_synonym="sueB" FT /gene_synonym="uar" FT /locus_tag="BP0678" FT /product="peptide chain release factor 1" FT /note="Similar to Escherichia coli peptide chain release FT factor 1 PrfA or SueB or Uar or B1211 SW:RF1_ECOLI (P07011) FT (360 aa) fasta scores: E(): 9.8e-89, 65.922% id in 358 aa, FT and to Neisseria meningitidis peptide chain release factor FT 1 Nmb1686 TR:Q9JY93 (EMBL:AE002519) (358 aa) fasta scores: FT E(): 2e-96, 71.989% id in 357 aa. Also similar to BP1104, FT 40.571% identity in 350 aa overlap." FT /db_xref="GOA:Q7W023" FT /db_xref="InterPro:IPR004373" FT /db_xref="UniProtKB/Swiss-Prot:Q7W023" FT /protein_id="CAE40989.1" FT /translation="MKPSMRSRLEQLAHRLIEVDALLAEPETAADMDRFRKLSRERAEL FT EPVVEAFNAFLGVEADVATAQEMLSDPDMKAMAEDEIKTGRARIEEMEAALQLLLLPRD FT PDDGRSLFLEIRAGTGGDESALFSGDLLRMYTRYAETRGWRVEIMSESESELGGYKEVI FT ARIDGDGAYGRLKFESGAHRVQRVPATEAQGRIHTSACTVAVMPEADAMSDIVINPSDL FT RIDTFRASGAGGQHINKTDSAVRITHVPTGLVVECQDDRSQHRNKDKAMQVLAARLKDK FT EMRERQSKEAAERKSLIGSGDRSERIRTYNYPQGRVTDHRINLTLYKLQQIMEGDLDEL FT TGALLAEHQAEQLAALGHDL" FT misc_feature 707..1048 FT /note="HMMPfam hit to PF00472, Peptidyl-tRNA hydrolase FT domain" FT CDS 1179..1991 FT /transl_table=11 FT /gene="hemK" FT /locus_tag="BP0679" FT /product="heme biosynthesis protein" FT /EC_number="2.1.1.-" FT /note="Similar to Escherichia coli HemK protein or B1212 FT SW:HEMK_ECOLI (P37186) (277 aa) fasta scores: E(): 1.2e-32, FT 42.578% id in 256 aa, and to Neisseria meningitidis HemK FT protein or Nma0369 TR:Q9JWH6 (EMBL:AL162753) (273 aa) fasta FT scores: E(): 7.5e-41, 48.846% id in 260 aa" FT /db_xref="GOA:Q7W022" FT /db_xref="HSSP:1UFK" FT /db_xref="InterPro:IPR002345" FT /db_xref="UniProtKB/TrEMBL:Q7W022" FT /protein_id="CAE40990.1" FT /translation="MTLLKDLLADPGLPRLEARMLAEHVLGRSRAWLLAHDTDPVEPAH FT EAAWRQLAARRLAGEPMAYLLGGREFMGHWYALTPDVLIPRPDTELLVETALHWLQGRA FT APRVLDLGTGSGAIAVSVALGCPQAEVTATDLSAAALAVAEGNAQRLGARVRCLAGDWY FT EALPAQDRYDLIVSNPPYIAREDAHLAQGDLRFEPRGALTDENDGLAALARIAGGAPGR FT LLPGGAIWMEHGWDQAEAARALLRQAGLREVHSRRDLAGIERISGGYL" FT misc_feature 1377..1412 FT /note="ScanRegExp hit to PS00213, Lipocalin signature." FT misc_feature 1701..1721 FT /note="ScanRegExp hit to PS00092, N-6 Adenine-specific DNA FT methylases signature." FT CDS 2028..2354 FT /transl_table=11 FT /locus_tag="BP0680" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nma0984 or Nmb0773 TR:Q9JR73 (EMBL:AL162754) (103 FT aa) fasta scores: E(): 2.8e-24, 66.337% id in 101 aa, and FT to Rhizobium meliloti conserved hypothetical protein FT Smc00538 TR:CAC46360 (EMBL:AL591788) (111 aa) fasta scores: FT E(): 9.6e-21, 57.009% id in 107 aa" FT /db_xref="GOA:Q7W021" FT /db_xref="HSSP:1B4Q" FT /db_xref="InterPro:IPR012335" FT /db_xref="UniProtKB/TrEMBL:Q7W021" FT /protein_id="CAE40991.1" FT /translation="MSDVQEFIRETVTQHPVVLFMKGTTQFPQCGFSGRAIQILKGCGV FT KKLVTVNVLEDDEVRQAIKTFSNWPTIPQLYVGGEFIGGSDIMSEMNESGELKQLLDDS FT GATA" FT CDS 2359..2919 FT /transl_table=11 FT /locus_tag="BP0681" FT /product="probable flavoprotein" FT /note="Similar to Streptomyces sp VdcB TR:Q9X696 FT (EMBL:AF134589) (200 aa) fasta scores: E(): 4.8e-33, FT 51.892% id in 185 aa, and to Escherichia coli phenylacrylic FT acid decarboxylase-like protein Pad1 TR:Q9F8R0 FT (EMBL:AF242211) (197 aa) fasta scores: E(): 1.5e-31, FT 49.189% id in 185 aa" FT /db_xref="GOA:Q7W020" FT /db_xref="InterPro:IPR004507" FT /db_xref="UniProtKB/TrEMBL:Q7W020" FT /protein_id="CAE40992.1" FT /translation="MRRLVVGITGATGAIYAVRLLQALRGVSDVESHLIVSASGVLNIK FT HELDVGRHDVQALADHVHSVRDVGATLASGAFQTAGMVIVPCSMRTLAAVAHGLSDNLI FT TRAADVTLKERRRLVMMVRETPFNLAHLRNMTAVTEMGGIIFPPLPAFYHRPASIEEMV FT DHTVARVLELFDIEVPGPHWAGM" FT misc_feature 2362..2727 FT /note="HMMPfam hit to PF02441, Flavoprotein" FT CDS 3160..4152 FT /transl_table=11 FT /locus_tag="BP0682" FT /product="putative exported protein" FT /note="Similar to Variovorax paradoxus 2,4-diphenoxyacetic FT acid gene cluster TR:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta FT scores: E(): 1.4e-38, 36.577% id in 298 aa, and to FT Rhizobium meliloti conserved hypothetical protein Sma1927 FT TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): FT 2.3e-42, 38.769% id in 325 aa" FT /db_xref="GOA:Q7W019" FT /db_xref="InterPro:IPR006311" FT /db_xref="PDB:2QPQ" FT /db_xref="UniProtKB/TrEMBL:Q7W019" FT /protein_id="CAE40993.1" FT /translation="MQRRSFLAKVAHIAAAVGVSACAATSSFAATGDFPNKPLDIIVTF FT PPGGGTDMLARLIGNYLTESLGQTAVVENRPGASGNVGARLVADRAPDGYSLLMVNSSF FT AVNPGVFRNLPFDPKKDFAAVINVAYVPSVFVVPAGSKYKTLGELMAAAKQTNTQVTYG FT SCGNGTPQHLAGELLNVSAKTHMVHVPYKGCGPALNDVLGSQIGLAVVTASSAIPFIKA FT GKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAK FT VMQRDDVQKKLADLGYSTASDGPEVFQKMVETDIDRFSALTKQIGLKVD" FT misc_feature 3160..3246 FT /note="Signal peptide predicted for BP0682 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.982 between residues 29 and 30" FT misc_feature 3175..3243 FT /note="1 probable transmembrane helix predicted for BP0682 FT by TMHMM2.0 at aa 13-35" FT misc_feature 3193..3225 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 4171..5166 FT /transl_table=11 FT /locus_tag="BP0683" FT /product="4,5-dihydroxyphthalate decarboxylase" FT /EC_number="4.1.1.55" FT /note="Similar to Burkholderia cepacia FT 4,5-dihydroxyphthalate decarboxylase OphC TR:Q9ZFR0 FT (EMBL:AF095748) (330 aa) fasta scores: E(): 6.3e-68, FT 49.848% id in 329 aa, and to Comamonas testosteroni FT 4,5-dihydroxyphthalate decarboxylase PhtD SW:PHTD_COMTE FT (Q59727) (330 aa) fasta scores: E(): 3.6e-65, 48.632% id in FT 329 aa" FT /db_xref="GOA:Q7W018" FT /db_xref="UniProtKB/TrEMBL:Q7W018" FT /protein_id="CAE40994.1" FT /translation="MSSKLKISLSCGDYDRTRALFDGRAPIEGCEVTAVPLEPEEAFHR FT AFRYHEYDVTEISMSSHMMTTARGDNEYIAIPAFLSRVFRHSGIYVRTDRDIDKPQDLR FT GKTIGVPEYQITANVWIRGILEDAYGVKPQDIKWRRGGIEEPGRGERAPIELPDGIDLQ FT QIPDDKTLSDMLEAGEIDGYIGARAPSCFLRGAPNVGRLFNDYLKTEQDYFRETRIFPI FT MHMVGIRRSLVEQNPWLPVSVYKAFLKAKMLAVKELNEICHLAVTLPWMVHHYNAAREL FT MGDDYWPYGLDANRHVIETFARYHYGQGLSRRLVKPEELFAASSLDLSKI" FT CDS join(5182..5958,5960..6052) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0684" FT /product="molybdopterin dehydrogenase (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 259. The frameshift occurs within FT a polymeric tract of (T)3. The sequence has been checked FT and believed to be correct. Similar to Pseudomonas putida FT quinoline 2-oxidoreductase, medium chain QorM TR:P72222 FT (EMBL:X98131) (288 aa) fasta scores: E(): 1.2e-31, 37.063% FT id in 286 aa, and to Arthrobacter nicotinovorans ketone FT dehydrogenase medium subunit KdhM TR:O87681 (EMBL:AJ306903) FT (296 aa) fasta scores: E(): 2.5e-37, 39.175% id in 291 aa" FT /db_xref="PSEUDO:CAE40995.1" FT misc_feature 5185..6012 FT /note="HMMPfam hit to PF00941, FAD binding domain in FT molybdopterin dehydrogenase" FT variation 5958..5960 FT /note="(T)3 in pertussis; (T)2 in parapertussis and FT bronchiseptica" FT CDS 6049..6558 FT /transl_table=11 FT /locus_tag="BP0684A" FT /product="probable 2Fe-2S ferredoxin" FT /note="Similar to Pseudomonas thermocarboxydovorans carbon FT monoxide oxygenase [cytochrome b-561], small chain Cut C FT TR:Q52589 (EMBL:X77931) (163 aa) fasta scores: E(): FT 1.1e-31, 57.051% id in 156 aa, and to Sulfolobus FT solfataricus carbon monoxide dehydrogenase, small chain FT amino-end fragment CutC-2 TR:Q97VI6 (EMBL:AE006859) (163 FT aa) fasta scores: E(): 5.3e-32, 54.658% id in 161 aa" FT /db_xref="GOA:Q7W017" FT /db_xref="HSSP:1FFV" FT /db_xref="InterPro:IPR001041" FT /db_xref="UniProtKB/TrEMBL:Q7W017" FT /protein_id="CAE40996.1" FT /translation="MSDITESTAQHVSLTVNGRACGGCAEPRMHLADFLRGELGLTGTH FT IGCEHGVCGACTVLVDGYSTRSCLMLAVQAQDSRIDTIEGLAGEDDALHPIQQAFHELH FT ALQCGYCTPGILMSVAELLAANPNPDEAQVRDVLSGHLCRCTGYQNIVAAVLRAAQLMR FT AEAGHD" FT misc_feature 6082..6270 FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain" FT misc_feature 6190..6216 FT /note="ScanRegExp hit to PS00197, 2Fe-2S ferredoxins, FT iron-sulfur binding region signature." FT misc_feature 6292..6519 FT /note="HMMPfam hit to PF01799, [2Fe-2S] binding domain" FT CDS 6551..8932 FT /transl_table=11 FT /locus_tag="BP0685" FT /product="probable dehydrogenase/oxidase" FT /note="Similar to Pseudomonas putida quinoline FT 2-oxidoreductase, large chain QorL TR:P72224 (EMBL:X98131) FT (788 aa) fasta scores: E(): 7.5e-52, 36.189% id in 782 aa, FT and to Arthrobacter nicotinovorans ketone dehydrogenase FT large subunit KdhL TR:CAC37487 (EMBL:AJ306904) (794 aa) FT fasta scores: E(): 9.9e-82, 35.379% id in 766 aa" FT /db_xref="GOA:Q7W016" FT /db_xref="HSSP:1FFV" FT /db_xref="InterPro:IPR008274" FT /db_xref="UniProtKB/TrEMBL:Q7W016" FT /protein_id="CAE40997.1" FT /translation="MTDATSPGLGRSAPRIEDDALLRGQARFLDDIEVEGVLHACFVRS FT PHAHARLVSIDLSAARAVPGVAAVYGARDLFGQLTSWRMPLGFPLAALPDDTTPFVLAE FT REVAFVGEAIAVVVADSRHIAEDAAARVAIEYEVLGAVVDCRDALRPDAPLVRGELASN FT ILQQYTLAYGDCETAFAQAHRVLEDDFWVHRGCAHPMEGRGVLARMDRATDTLTVWSST FT QMAHELHYTLALMLGQPEDRLRVVTPDVGGGFGAKFMIYPEEMAIPAAARKLGRPVKWV FT EDRREHFTTSIQERDQYWKVAMAIDDQGHVLGIRGNFVHDNGAYTPQGTNVPYNAASSM FT TGPYVVPAFSLDVSVAYTNKVPVATVRGAGYPQAAFVMERMMDRVAAELGIDPGECRRR FT NLIGPAKIPYTKPLKSRAGMPLTIDSGDFPALQACALQASDYDGFAVRRDAALARGRWR FT GIAVANSVEPTGRGPFEVARVRVQPSGQVSIYTGALAMGQGIKTTLAQICAGHLGVPVA FT AVEVQAGDTAYVGYGMGGFASRQAIMAGSAVDQAAAQVRRQALETAAAVLKAEAETLEL FT ADGEVRAPDGQSVSLARLAMLRKGVPGYALVSPGDPGLDATAYFHCDAQTYAGASHVCE FT VEVDPATGAIEIVRYVAAQDSGRIINPQLAEGQVHGGVVHGIGNALFEWMGYDAAGQPL FT STTFAEYLLPTAPEVPPIEVVFQPSPTPLNPLGVKGVGECATIPVAVAVVGAVEHAVAH FT CGVRVTEFPLTPVRLLELLTQAEARAAAPTDSGEFVDGVH" FT misc_feature 6617..8680 FT /note="HMMPfam hit to PF01315, Aldehyde oxidase and FT xanthine dehydrogenase, a/b hammerhead domain" FT misc_feature 7967..7996 FT /note="ScanRegExp hit to PS00215, Mitochondrial energy FT transfer proteins signature." FT CDS join(8973..9335,9339..9695) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0686" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS contains an in-frame TAG stop FT codon. The sequence has been checked and believed to be FT correct. Similar to Arthrobacter nicotinovorans Orf235 FT TR:AAK64256 (EMBL:AF373840) (235 aa) fasta scores: E(): FT 4.7e-09, 31.604% id in 212 aa, and to Mycobacterium FT tuberculosis CDC1551 hypothetical 21.6 kDa protein mt0384.1 FT TR:AAK44606 (EMBL:AE006943) (200 aa) fasta scores: E(): FT 1.7e-07, 34.194% id in 155 aa" FT /db_xref="PSEUDO:CAE40998.1" FT variation 9336..9338 FT /note="In-frame TAG stop codon in pertussis; CAG in FT parapertussis and bronchiseptica" FT CDS complement(9800..10750) FT /transl_table=11 FT /locus_tag="BP0688" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE40999.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 9800..9831 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(9800..10852) FT misc_feature complement(9836..10369) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(10427..10492) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(10821..10852) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(10849..11799) FT /transl_table=11 FT /locus_tag="BP0689" FT /product="putative lipoprotein" FT /note="Similar to Pseudomonas aeruginosa rare lipoprotein A FT precursor RlpA or Pa4000 TR:Q9X6V6 (EMBL:AF147448) (342 aa) FT fasta scores: E(): 8.6e-23, 39.869% id in 306 aa, and to FT Vibrio cholerae rare lipoprotein A, putative Vc0948 FT TR:Q9KTF4 (EMBL:AE004177) (263 aa) fasta scores: E(): FT 3.4e-23, 37.079% id in 267 aa" FT /db_xref="InterPro:IPR007730" FT /db_xref="UniProtKB/TrEMBL:Q7W015" FT /protein_id="CAE41000.1" FT /translation="MIRSRPLALLSTLLLALAIAGCSTPGKKRGGYYKDDGPDANPPSN FT LDNVPDATPRLEPLASGPNRPYVVFGKRYVPDTSERPFRQQGLASWYGKKFHGNSTSNG FT ESYDMYAMTAAHPTMPIPSYARVTSKINGRTVIVRVNDRGPFHSDRIMDLSYVAAHKLG FT IIGPGSGPVTVERILPAEILAMNGGAAAPRPGPASATGPLPVAAPSAAAAVELHPATQL FT ASNAPTPPRPAAGAGSGVYLQLGAFSQPANAESLVSRINGQLDPASGIPPAVVEQANNL FT YRVRIGPYATREAALGAVQPVADRTGILPSLSATP" FT misc_feature complement(11734..11766) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature complement(11737..11799) FT /note="Signal peptide predicted for BP0689 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.564 between residues 21 and 22" FT CDS complement(11796..12668) FT /transl_table=11 FT /locus_tag="BP0690" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nmb0738 TR:Q9K080 (EMBL:AE002428) (284 aa) fasta FT scores: E(): 6e-48, 46.643% id in 283 aa, and to Vibrio FT cholerae hypothetical protein Vc2532 TR:Q9KP47 FT (EMBL:AE004322) (286 aa) fasta scores: E(): 1.9e-42, FT 43.554% id in 287 aa" FT /db_xref="GOA:Q7W014" FT /db_xref="InterPro:IPR005337" FT /db_xref="UniProtKB/Swiss-Prot:Q7W014" FT /protein_id="CAE41001.1" FT /translation="MLRVVLITGISGSGKSVALRLLEDAGFTCIDNLPVRFLAEFIANA FT RDDAMERVAVAIDVRSPGELAELPDVITASRAMGTSLSVIFLDANTDTLVQRYSESRRR FT HPLTDRLARGGKTPSLAECIALERELMAPLRDQEHVIDTSDLTPGQLRAWIRDLIQADR FT PPLVLTFESFAYKRGVPSDADLMFDVRCLPNPYYDRTLRPLTGRDEPVATWLGGFDIVT FT QMIDDIAAFIRRWLPQYTQDTRNYLTVAIGCTGGQHRSVYVVEQLARRFSDHDPLLVRH FT RTQLPDDPA" FT misc_feature complement(12201..12266) FT /note="Predicted helix-turn-helix motif with score 1076 FT (+2.85 SD) at aa 135-156, sequence RDQEHVIDTSDLTPGQLRAWIR" FT misc_feature complement(12621..12644) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS join(12840..13499,13499..13589) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0691" FT /product="probable cytochrome C (pseudogene)" FT /note="Similar to Pseudomonas aeruginosa probable FT cytochrome C Pa2482 SWALL:Q9I100 (EMBL:AE004676)(217 aa) FT fasta scores: E(): 2.9e-14, 33.01% id in 212 aa." FT /db_xref="PSEUDO:CAE41002.1" FT misc_feature 12840..12947 FT /note="Signal peptide predicted for BP0691 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.939 between residues 36 and 37" FT misc_feature 12999..13016 FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT misc_feature 13278..13514 FT /note="HMMPfam hit to PF00034, Cytochrome c" FT misc_feature 13305..13322 FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT CDS 13599..14885 FT /transl_table=11 FT /locus_tag="BP0692" FT /product="cytochrome C" FT /note="Similar to Pectobacterium cypripedii cytochrome C FT precursor TR:O34215 (EMBL:U97665) (441 aa) fasta scores: FT E(): 2.7e-35, 41.106% id in 416 aa, and to Acetobacter FT pasteurianus cytochrome C subunit of alcohol dehydrogenase FT TR:Q57536 (EMBL:D13893) (472 aa) fasta scores: E(): FT 2.7e-34, 40.146% id in 411 aa" FT /db_xref="GOA:Q7W013" FT /db_xref="HSSP:1C52" FT /db_xref="InterPro:IPR014353" FT /db_xref="UniProtKB/TrEMBL:Q7W013" FT /protein_id="CAE41003.1" FT /translation="MKIIKRVLVVAILALLAAVATLYWLGTRDHVPAGPQAAPATGSAD FT ELVEQGRYLARAGNCMACHTARGGQAYAGGTPIPTPFGTLYGPNITPDAETGIGGWSAD FT DFWQVLHNGKGPGGRLLYPAFPYTEYTRMTRADADALYAFLRTVEPVRQASRPHELASP FT YDQRLLLAAWRALYFEPGGPQADPGQSLQWNRGRYLTEGLGHCAACHTPRNSLGATRAA FT EALGGGMIDGLGWYAPPLTGQPGTGLGDWSAQDIAALLTTGIAPHSTVAGPMAEVVLGS FT TQYLSGDDALAIGTYLKSLPAAASPPARRGAPSATVMELGGKLYGQHCAQCHQADGKGS FT FPAWPALAGNPSVIAAEPANVIRMVLDGGFAPATAANPRPHGMPPFAQALPDNDIAMLV FT SYVRNSWGNQAGAVTPLDVKRTRESGAGR" FT misc_feature 13599..13658 FT /note="Signal peptide predicted for BP0692 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.305 between residues 20 and 21" FT misc_feature 13617..13676 FT /note="1 probable transmembrane helix predicted for BP0692 FT by TMHMM2.0 at aa 7-26" FT misc_feature 13776..13793 FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT misc_feature 14214..14231 FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT misc_feature 14550..14816 FT /note="HMMPfam hit to PF00034, Cytochrome c" FT misc_feature 14583..14600 FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT CDS complement(14939..15865) FT /transl_table=11 FT /locus_tag="BP0693" FT /product="Hpr serine kinase/phosphatase" FT /EC_number="2.7.1.-" FT /note="Similar to Bacillus subtilis Hpr(ser) FT kinase/phosphatase HprK or PtsK SW:HPRK_BACSU (O34483) (309 FT aa) fasta scores: E(): 2.3e-34, 36.149% id in 296 aa, and FT to Neisseria meningitidis putative kinase/phosphatase FT nma0947 TR:Q9JV91 (EMBL:AL162754) (320 aa) fasta scores: FT E(): 1.1e-48, 49.505% id in 303 aa" FT /db_xref="GOA:Q7U365" FT /db_xref="InterPro:IPR011126" FT /db_xref="UniProtKB/Swiss-Prot:Q7U365" FT /protein_id="CAE41004.1" FT /translation="MLTVQELVDDNADKIPFSWIAGHDAADRAISDDGMAAADLVGHLN FT LIHPSRIQVFGQEELAYYTRFDLRRRMHHMDELLIGGVPAILLADGLTPPQDLIDQCAQ FT HQVPLLSTPVAAAQLIDLLRIYLGKKLAPTTTVHGVFLDVLGLGVLITGESGLGKSELA FT LELISRGHGLVADDAVELSRTAPGVIEGHCPQLLQNLLEVRGLGLLDIRTIFGETSVRR FT KMRLKLIVHLVRATAQDKFERLPLQDITQDMLGLPIRKVMLQVAAGRNLAVLVEAAVRN FT TILKLRGIDTLGEFMERQAMAILQSSK" FT misc_feature complement(14942..15862) FT /note="HMMPfam hit to PF02603, Hpr Serine kinase" FT misc_feature complement(15386..15409) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(15884..16339) FT /transl_table=11 FT /gene="rpoP" FT /gene_synonym="ptsN" FT /locus_tag="BP0694" FT /product="nitrogen regulatory IIA protein" FT /EC_number="2.7.1.69" FT /note="Similar to Escherichia coli nitrogen regulatory IIA FT protein PtsN or RpoP or B3204 SW:PTSN_ECOLI (P31222) (163 FT aa) fasta scores: E(): 6.2e-13, 40.000% id in 120 aa, and FT to Alcaligenes eutrophus hypothetical 16.5 kDa protein FT TR:Q9EX66 (EMBL:AJ131690) (151 aa) fasta scores: E(): FT 1.6e-37, 65.986% id in 147 aa" FT /db_xref="GOA:Q7W012" FT /db_xref="HSSP:1A6J" FT /db_xref="InterPro:IPR002178" FT /db_xref="UniProtKB/TrEMBL:Q7W012" FT /protein_id="CAE41005.1" FT /translation="MNHLSRILPAGNVVLDMLATSKKRAFEQAGLLFENHHGLARSVVF FT DSLFSRERLGSTALGQGVAVPHGRVKGLDQALAAFIRLAQPIPFDAPDGQPVSMLLCLL FT VPEAATQQHLDILAELAQLMSNKPLREALASETDPAAVHRMLTTGQL" FT misc_feature complement(16079..16210) FT /note="HMMPfam hit to PF00359, FT Phosphoenolpyruvate-dependent sugar phosphotransferase FT system, EIIA 2" FT misc_feature complement(16136..16186) FT /note="ScanRegExp hit to PS00372, PTS EIIA domains FT phosphorylation site signature 2. Confirmed by InterPro FT eMOTIF pattern match." FT CDS complement(join(16616..16843,16846..16956)) FT /pseudo FT /transl_table=11 FT /gene="rpoN" FT /locus_tag="BP0696" FT /product="probable sigma(54) modulation protein FT (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 37. The frameshift occurs within a FT dimeric tract of (CA)2. The sequence has been checked and FT believed to be correct. Similar to Alcaligenes eutrophus FT probable sigma(54) modulation protein SW:RP5M_ALCEU FT (P28613) (130 aa) fasta scores: E(): 4.3e-18, 50.820% id in FT 122 aa, and to Pseudomonas aeruginosa RpoN TR:Q51562 FT (EMBL:L26916) (103 aa) fasta scores: E(): 3.6e-14, 52.174% FT id in 92 aa" FT /db_xref="PSEUDO:CAE41006.1" FT misc_feature complement(join(16670..16843,16846..16953)) FT /note="HMMPfam hit to PF02482, Sigma 54 modulation protein FT / S30EA ribosomal protein" FT variation complement(16842..16845) FT /note="(CA)2 in pertussis; (CA)1 deleted in parapertussis FT and bronchiseptica" FT CDS complement(17191..17982) FT /transl_table=11 FT /locus_tag="BP0697" FT /product="ABC transporter" FT /note="Similar to Rhizobium leguminosarum ABC-type permease FT homolog TR:Q52785 (EMBL:U23471) (258 aa) fasta scores: E(): FT 3.3e-47, 60.938% id in 256 aa, and to Alcaligenes eutrophus FT hypothetical 28.7 kDa protein TR:Q9EX70 (EMBL:AJ131690) FT (263 aa) fasta scores: E(): 1.6e-57, 69.811% id in 265 aa" FT /db_xref="GOA:Q7W011" FT /db_xref="HSSP:1G6H" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W011" FT /protein_id="CAE41007.1" FT /translation="MTDSHATLSTATAAGAAAGSLRATGLRKTYNGRTVVQDVSLSVVS FT GEVVGLLGPNGAGKTTSFYMIVGLVPADSGRIEIDGSNITSMPIHKRARMGLSYLPQDA FT SVFRRLTVEQNIRAVLELQLGPNGKPLPEARIRDNLEALLEELQIGHIRANTAISLSGG FT ERRRVEIARALATSPRFILLDEPFAGVDPIAVIEIQRIVRFLKGRGIGVLITDHNVRET FT LGICDRAYIISEGKVLTDGHPDEIVGDPAVRRVYLGEHFRM" FT misc_feature complement(17278..17847) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(17461..17505) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(17803..17826) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(17914..17982) FT /note="Signal peptide predicted for BP0697 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.962) with cleavage site FT probability 0.565 between residues 23 and 24" FT CDS complement(18014..18634) FT /transl_table=11 FT /locus_tag="BP0698" FT /product="putative exported protein" FT /note="Similar to Escherichia coli protein YhbN precursor FT YhbN or B3200 or Z4563 or Ecs4079 SW:YHBN_ECOLI (P38685) FT (185 aa) fasta scores: E(): 0.19, 28.877% id in 187 aa, and FT to Alcaligenes eutrophus hypothetical 16.9 kDa protein FT TR:Q9EX71 (EMBL:AJ131690) (155 aa) fasta scores: E(): FT 2.3e-09, 37.984% id in 129 aa" FT /db_xref="InterPro:IPR005653" FT /db_xref="UniProtKB/TrEMBL:Q7W010" FT /protein_id="CAE41008.1" FT /translation="MTHLRLSLAPLRLCSILLLAAAGAAQAQAQSGQAAPAEEPSTLIL FT SDTLHYDDIKRQSIFTGNVILTRGLMTLTSDKLEVNEDAAGNQFGVATADKGKIVTIRQ FT DRPETFELIEGKGLRAEYESSKSQFDLIGQAIVTRYICGKPFDTIRGDRVRYNEKTGIY FT QAQGGPNSSAAGGRVRSLAEPRAKADAAIAECRAKKQAPKKPQ" FT misc_feature complement(18554..18634) FT /note="Signal peptide predicted for BP0698 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.604 between residues 27 and 28" FT CDS complement(18631..19260) FT /transl_table=11 FT /locus_tag="BP0699" FT /product="putative exported protein" FT /note="Similar to Neisseria meningitidis putative FT periplasmic hypothetical protein Nma2133 TR:Q9JSU4 FT (EMBL:AL162758) (193 aa) fasta scores: E(): 0.00062, FT 23.711% id in 194 aa, and to Pseudomonas aeruginosa FT hypothetical protein Pa4459 TR:Q9HVV8 (EMBL:AE004860) (190 FT aa) fasta scores: E(): 0.04, 22.989% id in 174 aa" FT /db_xref="InterPro:IPR010664" FT /db_xref="UniProtKB/TrEMBL:Q7W009" FT /protein_id="CAE41009.1" FT /translation="MKERFPSLIALFLLLALVVGTWWAADYAQRAVQVDPPRRLTHEMD FT SWARDFVMLRTDVQGHPINRLEGVYVEHFPDDDSYHVTTPRAIGQQAGNPITIGVSKTA FT IMEQGGQRIVMNGDTHVHRQPDARNETLDVRSQQLILLPDEDVVFTDLPAQVNKGNSRM FT NGTGMHYNNKTRQLRVSAAADVEIAGTEGRKRQSTETPANSNQNKP" FT misc_feature complement(19177..19260) FT /note="Signal peptide predicted for BP0699 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.991) with cleavage site FT probability 0.508 between residues 28 and 29" FT misc_feature complement(19189..19239) FT /note="1 probable transmembrane helix predicted for BP0699 FT by TMHMM2.0 at aa 7-24" FT CDS complement(19273..19881) FT /transl_table=11 FT /locus_tag="BP0700" FT /product="probable hydrolase" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nma2134 TR:Q9JSU3 (EMBL:AL162758) (178 aa) fasta FT scores: E(): 3.7e-25, 44.706% id in 170 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa4458 FT TR:Q9HVV9 (EMBL:AE004860) (179 aa) fasta scores: E(): FT 4.9e-25, 48.428% id in 159 aa" FT /db_xref="GOA:Q7W008" FT /db_xref="HSSP:1K1E" FT /db_xref="InterPro:IPR006549" FT /db_xref="UniProtKB/TrEMBL:Q7W008" FT /protein_id="CAE41010.1" FT /translation="MTKNSPVSVPHPAEALVLARIPASVRERAAAVRLMVFDVDGVLTD FT GGLYYGEHGEMFKRFHALDGHGLRLLMEGGLKVALITGRSGPIADRRAAELGIAEVLQG FT VRDKGGALSELAQRVGVQLNQTGYMGDDIIDLPAMQRAGFAASVANAPGYVAQAAHWVS FT SQPGGQGAVRECCDLLLAAQGRLGTFLGTPALLGPGAIQ" FT misc_feature complement(19426..19788) FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase" FT CDS complement(19878..20867) FT /transl_table=11 FT /locus_tag="BP0701" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli GutQ protein GutQ or FT SrlQ or B2708 SW:GUTQ_ECOLI (P17115) (321 aa) fasta scores: FT E(): 2e-49, 48.438% id in 320 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa4457 TR:Q9HVW0 FT (EMBL:AE004860) (326 aa) fasta scores: E(): 6.5e-60, FT 56.190% id in 315 aa" FT /db_xref="GOA:Q7W007" FT /db_xref="InterPro:IPR001347" FT /db_xref="UniProtKB/TrEMBL:Q7W007" FT /protein_id="CAE41011.1" FT /translation="MSAHPDPTPEAILASARRTLQTEAQAIADLAARLDDSFVQVVGML FT LACRGRVVVSGIGKTGHIARKLAATLASTGTPAFFVHAAEAIHGDLGMVTRDDVLIAIS FT YSGTGQELLTILPVVRRMGAGLIAITGNAESELARLADVHLDASVSQEACPLNLAPTAS FT TTAALALGDALAVACLEARGFGREDFARSHPGGALGRRLLTHVRDVMRHGPALPIVAED FT APLPRALEEISAKGMGMTAVVDAQRKPVGIFTDGDLRRLIERVGDIRSLTVADGMTRAP FT RTIGPDALAAEAAQQMDDRRLNQMLVVDTAGVLIGALHTHDLMAAKVV" FT misc_feature complement(19884..20045) FT /note="HMMPfam hit to PF00571, CBS domain" FT misc_feature complement(20079..20240) FT /note="HMMPfam hit to PF00571, CBS domain" FT misc_feature complement(20337..20741) FT /note="HMMPfam hit to PF01380, SIS domain" FT CDS 20973..22187 FT /transl_table=11 FT /gene="purT" FT /locus_tag="BP0702" FT /product="phosphoribosylglycinamide formyltransferase 2" FT /EC_number="2.1.2.-" FT /note="Similar to Escherichia coli FT phosphoribosylglycinamide formyltransferase 2 PurT or B1849 FT SW:PURT_ECOLI (P33221) (391 aa) fasta scores: E(): 1.7e-87, FT 63.409% id in 399 aa, and to Pseudomonas aeruginosa FT phosphoribosylglycinamide formyltransferase 2 PurT or FT Pa3751 TR:Q9HXP3 (EMBL:AE004794) (393 aa) fasta scores: FT E(): 9.7e-93, 67.424% id in 396 aa" FT /db_xref="GOA:Q7W006" FT /db_xref="HSSP:1KJI" FT /db_xref="InterPro:IPR013816" FT /db_xref="UniProtKB/Swiss-Prot:Q7W006" FT /protein_id="CAE41012.1" FT /translation="MSTFPAPVLGTPLSPTATRVMLLGAGELGKEVVIALQRLGVEVIA FT VDRYADAPGHQVAHRAHVVSMTDPQALRQVIEQERPHVVVPEIEAIATDLLVALEDEGA FT VHVTPTARAAHLTMNREGIRRLAAETLGLPTSPYRFVDTEQALREAIDGGIGYPCVIKP FT VMSSSGKGQSIIRSADDIAAAWRYAQEGGRVGAGRVIVEGFIEFDYEITLLTVRARGAD FT GQIVTQFCEPIGHRQVDGDYVESWQPHPMSPVALQRSREIALAVTGDLGGLGIFGVELF FT VAGDQVWFSEVSPRPHDTGMVTLISQVQNEFELHARALLGLPVDTRLRQPGASSVIYGG FT VDARGVAFEGVAQALAEPGTDIRLFGKPESYAKRRMGVGLAVADDVDQARAKAARVSQA FT VRVRA" FT misc_feature 21108..21620 FT /note="HMMPfam hit to PF02222, ATP-grasp domain" FT CDS 22324..24057 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0703" FT /product="N-terminal region of TonB dependent receptor FT protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. The C-terminal region of this CDS is FT BP0257. Similar to Salmonella typhimurium ferrichrome iron FT receptor FhuA TR:O86925 (EMBL:Y14025) (729 aa) fasta FT scores: E(): 3.6e-19, 25.738% id in 610 aa, and to FT Pseudomonas SpBG33R. ferrisiderophore receptor-like protein FT TR:Q9RC04 (EMBL:AF153707) (691 aa) fasta scores: E(): FT 1.2e-118, 56.469% id in 572 aa. Similar to BP1962 (30.179% FT identity in 613 aa overlap)" FT /db_xref="PSEUDO:CAE41013.1" FT misc_feature 22324..22407 FT /note="Signal peptide predicted for BP0703 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.938 between residues 28 and 29" FT repeat_region 24037..24068 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 24037..25089 FT CDS 24139..25089 FT /transl_table=11 FT /locus_tag="BP0704" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7W005" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7W005" FT /protein_id="CAE41014.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAHALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 24397..24462 FT /note="Predicted helix-turn-helix motif with score 2363 FT (+7.24 SD) at aa 87-108, sequence LTQARIAHALGVSASTVSRVLA" FT misc_feature 24520..25053 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(25058..25089) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 25089..26396 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0705" FT /product="putative C-terminal region of dehydrogenase FT (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. This is the C-terminal region of BP3209. FT Similar to Escherichia coli choline dehydrogenase BetA or FT B0311 SW:BETA_ECOLI (P17444) (556 aa) fasta scores: E(): FT 1.2e-51, 40.515% id in 427 aa, and to Pseudomonas FT aeruginosa probable Gmc-type oxidoreductase Pa3710 FT TR:Q9HXT1 (EMBL:AE004790) (557 aa) fasta scores: E(): FT 1.3e-107, 65.367% id in 436 aa. The N-terminal part of this FT partial CDS is BP3209." FT misc_feature 25137..26360 FT /note="HMMPfam hit to PF00732, GMC oxidoreductase" FT CDS 26523..27809 FT /transl_table=11 FT /locus_tag="BP0706" FT /product="putative membrane protein" FT /note="Similar to Roseateles depolymerans Orf428 protein FT TR:Q9F206 (EMBL:AB028938) (428 aa) fasta scores: E(): FT 7.6e-89, 58.080% id in 427 aa, and to Xylella fastidiosa FT hypothetical protein Xf0042 TR:Q9PHA2 (EMBL:AE003858) (420 FT aa) fasta scores: E(): 4.2e-44, 53.682% id in 421 aa" FT /db_xref="InterPro:IPR009978" FT /db_xref="UniProtKB/TrEMBL:Q7W004" FT /protein_id="CAE41016.1" FT /translation="MPHAIEIVATLLFSVAVLHTFSVPFFARLAHRNGPHAGVWHLLSE FT VEAVFGVWAFVLIACMALMAGTDRAVQYMDTRNFTEPLFVFAIMVVASSRPILELVGSV FT VRLLAAMVPIRRELATFFIVMSIVPLGGSFITEPAAMTLAAILLRDGYFRCSGRAGFKY FT MTLGVLFVNVSIGGVLTSYAAPPVLMVAATFGWDTAYMATHFGWRAAVAVFLNAGVLTM FT LCRQALLEGAVGTGAGVNASGDASEKRPPVPAPVTLMHLAFLVGIVLTAHHPAVFLGML FT MMFIGFAHAYQRHQSRLMIREGLMVGFFLAGLVVLGGLQKWWLQDLLGGLEPTVLFWGA FT TALTAITDNAALTYLGSLVEGTSEAWRYMLVAGAVTGGGLTVIANAPNPAGFAILGKYF FT PDGSISSGRLFIAALVPTLVAAAMFMLPV" FT misc_feature join(26532..26600,26643..26711,26769..26837,26895..26963, FT 27024..27092,27309..27377,27414..27482,27525..27593, FT 27630..27698,27741..27800) FT /note="10 probable transmembrane helices predicted for FT BP0706 by TMHMM2.0 at aa 21-43, 58-80, 100-122, 142-164, FT 185-207, 280-302, 315-337, 352-374, 387-409 and 424-443" FT CDS 27975..28283 FT /transl_table=11 FT /locus_tag="BP0707" FT /product="conserved hypothetical protein" FT /note="Similar to Streptomyces coelicolor hypothetical 10.8 FT kDa protein Sce22.04 TR:Q9KYV8 (EMBL:AL355832) (110 aa) FT fasta scores: E(): 2.8e-07, 34.653% id in 101 aa, and to FT Mycobacterium leprae hypothetical ser-rich C-terminus FT protein Ml0180 TR:Q9CD66 (EMBL:AL583917) (99 aa) fasta FT scores: E(): 9.8e-05, 32.673% id in 101 aa" FT /db_xref="InterPro:IPR013429" FT /db_xref="UniProtKB/TrEMBL:Q7W003" FT /protein_id="CAE41017.1" FT /translation="MPIYAYKCSACGHAEDVLQKISDAPLADCPACGQSTYSKQVTAAG FT FQLKGSGWYVTDFRNNNGAGKPAAGQSAAPAASGGDAGGASASAATPAPAAPAATST" FT CDS 28284..28949 FT /transl_table=11 FT /locus_tag="BP0708" FT /product="putative membrane protein" FT /note="Similar to Neisseria meningitidis putative integral FT membrane protein Nma2020 TR:Q9JT22 (EMBL:AL162757) (245 aa) FT fasta scores: E(): 1.3e-33, 47.143% id in 210 aa, and to FT Rhizobium meliloti hypothetical transmembrane protein FT Smc00229 TR:CAC46233 (EMBL:AL591788) (230 aa) fasta scores: FT E(): 3.8e-26, 41.627% id in 209 aa" FT /db_xref="InterPro:IPR007462" FT /db_xref="UniProtKB/TrEMBL:Q7W002" FT /protein_id="CAE41018.1" FT /translation="MRHSVMRVFKKYFITGLLIWVPLAITVWVLGLLVATLEGFVPGFL FT SSQSLFGVDIPGFRFVLVITVVLLTGVFAANLLGRSLLEHWERILGRIPLVRSIYNSVK FT QVSDTVLAPNGRAFRQAVLIQYPRAGSWTIAFLTGTPSGEVASYLPGEHLSVYVPTTPN FT PTSGFFLMMPRDQVIDLQMSVDAALKYIVSMGVVAPADRRPVSPPTTPGAPLAPGAEP" FT misc_feature 28299..28439 FT /note="Signal peptide predicted for BP0708 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.871) with cleavage site FT probability 0.441 between residues 47 and 48" FT misc_feature join(28317..28385,28452..28520) FT /note="2 probable transmembrane helices predicted for FT BP0708 by TMHMM2.0 at aa 7-29 and 52-74" FT CDS 28990..30780 FT /transl_table=11 FT /gene="aspS" FT /gene_synonym="tls" FT /locus_tag="BP0709" FT /product="aspartyl-tRNA synthetase" FT /EC_number="6.1.1.12" FT /note="Similar to Escherichia coli aspartyl-tRNA synthetase FT AspS or Tls or B1866 SW:SYD_ECOLI (P21889) (590 aa) fasta FT scores: E(): 1.7e-138, 58.179% id in 593 aa, and to FT Neisseria meningitidis aspartyl-tRNA synthetase Nmb0466 FT TR:Q9K0U5 (EMBL:AE002403) (602 aa) fasta scores: E(): FT 2.1e-173, 70.252% id in 595 aa" FT /db_xref="GOA:Q7W001" FT /db_xref="InterPro:IPR004365" FT /db_xref="UniProtKB/Swiss-Prot:Q7W001" FT /protein_id="CAE41019.1" FT /translation="MRTCYTGQVCRDHLGQTVTLYGWVNRRRDHGGVIFIDLRDRTGLA FT QIVFDPDNAEAFGTAERLRNEFCISITGLVRLRPEGTANAELASGEVEVLCQQVEILNA FT SVTPPFQLDDDNLSETTRLTHRVLDLRRPQMQHNLMLRYRVSIEVRKYLDQLGFIDIET FT PMLTKSTPEGARDYLVPSRVNAGYFFALPQSPQLFKQMLMVSGFDRYYQITKCFRDEDL FT RADRQPEFTQIDCETSFLNEVEIREIFEGMIRHVFKVVQDVDLPTPFPIMSWTEAMQRY FT GSDKPDLRVNLEFTDMTDVMRDVDFKVFASAATTAGSRVVALRVQGGGEMSRSEIDAYT FT QFVGIYGAKGLAYIKVNDVAKGREGLQSPIVKNLHDAALAELVKRTGAQNGDIIFFGAD FT RAKVVNDAIGALRVKIGHSEFGKKAGLFSGGWKPLWVVDFPMFEYDEEENRYTAAHHPF FT TSPKDGHEDFLESDPGKAVAKAYDMVLNGWEIGGGSVRIHREEVQSKVFRALKIDAEEA FT REKFGFLLDALQYGAPPHGGIAFGLDRIITMMAGAESIRDVIAFPKTQRAQCLLTGAPS FT EVDEKQLRELHIRLRNVEVK" FT misc_feature 29041..29295 FT /note="HMMPfam hit to PF01336, OB-fold nucleic acid binding FT domain" FT misc_feature 29341..30687 FT /note="HMMPfam hit to PF00152, tRNA synthetases class II FT (D, K and N)" FT misc_feature 29638..29691 FT /note="ScanRegExp hit to PS00179, Aminoacyl-transfer RNA FT synthetases class-II signature 1. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 30604..30633 FT /note="ScanRegExp hit to PS00339, Aminoacyl-transfer RNA FT synthetases class-II signature 2." FT CDS 30893..31753 FT /transl_table=11 FT /locus_tag="BP0710" FT /product="putative endonuclease/exonuclease/phosphatase FT family protein" FT /note="Similar to Escherichia coli hypothetical protein FT YbhP or B0790 or Z1009 or Ecs0868 SW:YBHP_ECOLI (P75772) FT (253 aa) fasta scores: E(): 2.3e-20, 36.426% id in 291 aa, FT and to Pseudomonas aeruginosa hypothetical protein Pa2156 FT TR:Q9I1V9 (EMBL:AE004642) (245 aa) fasta scores: E(): FT 4.6e-20, 37.457% id in 291 aa. Also similar to BP1340, FT 37.801% identity (46.610% ungapped) in 291 aa overlap." FT /db_xref="GOA:Q7W000" FT /db_xref="InterPro:IPR005135" FT /db_xref="UniProtKB/TrEMBL:Q7W000" FT /protein_id="CAE41020.1" FT /translation="MSLIRVVSYNIHKGRSALGRRESLNDLRLGLYGLRPDLVFLQEVQ FT GRNEVSSVLHAQHESLAAALRLQAAYGRNAIRTGTDHGNALLSRFDILDHENQDISDHR FT LEQRGLLHARIDVGGTEVHCFVVHLGLFAGSRGRQIQALTDRIRQSVPDGAPLLIVGDF FT NDWGDRLAPMFVQQLGLYEVFSHAPRSHGGDLPRLRDSVRRLGNVLRGVPNSVAVLERN FT NQLGMGGAYCPLPPPRTFPAVFPWFRLDRIYQRGFAVRSARVLRGREWARLSDHSPLLA FT ELELP" FT CDS 31750..32955 FT /transl_table=11 FT /locus_tag="BP0711" FT /product="putative phospholipase" FT /note="Similar to Escherichia coli cardiolipin synthetase FT Cls or Nov or B1249 SW:CLS_ECOLI (P31071) (486 aa) fasta FT scores: E(): 2.8e-13, 28.378% id in 370 aa, and to FT Escherichia coli hypothetical protein YbhO or B0789 or FT Z1008 or Ecs0867 SW:YBHO_ECOLI (P75771) (413 aa) fasta FT scores: E(): 9.9e-28, 38.265% id in 392 aa" FT /db_xref="GOA:Q7VZZ9" FT /db_xref="InterPro:IPR001736" FT /db_xref="UniProtKB/TrEMBL:Q7VZZ9" FT /protein_id="CAE41021.1" FT /translation="MKAQIVRLHWTDGNAIRLLQNGGDFFPALCEAIDAARLSVHMETY FT IFLLDRTGRQMLECLESAARRGVKVRVVLDGFGSAGTAETIRLRITQAGGQCRIFRPEP FT RWLGHLAFSRSRLRRLHRKVAVVDAELAFVGGINIVDDYDDLDPGDDIPAPRFDFAVAV FT QGPLVPHILYAQDLLWVRLNWARLRRHPGDWMRLFKPVHADASPAGKLRAALLLRDNLR FT FRQTFEQAYLYGIQHARRDILIANAYFFPGHQFRKSLMQAAARGVRVRLLLQGKPEYRM FT QYFATRALYDRLLRGGIEIYEYMPGYLHAKVAVIDNMATVGSSNLDPFSLLLAREANVV FT VDDQPFAWDLQERLERAIALGGQFIRPLDYQRRGWLRRCVDVAAYTMLRIGVALTGRAG FT RY" FT misc_feature 32095..32178 FT /note="HMMPfam hit to PF00614, Phospholipase D. Active site FT motif" FT misc_feature 32659..32739 FT /note="HMMPfam hit to PF00614, Phospholipase D. Active site FT motif" FT CDS complement(32952..33836) FT /transl_table=11 FT /locus_tag="BP0712" FT /product="putative membrane protein" FT /note="Similar to Vibrio cholerae hypothetical protein FT Vca0090 TR:Q9KN75 (EMBL:AE004352) (297 aa) fasta scores: FT E(): 9.3e-45, 47.887% id in 284 aa, and to Rhizobium loti FT Mlr1585 protein TR:Q98K88 (EMBL:AP002997) (305 aa) fasta FT scores: E(): 4.8e-22, 34.343% id in 297 aa" FT /db_xref="GOA:Q7VZZ8" FT /db_xref="InterPro:IPR000620" FT /db_xref="UniProtKB/TrEMBL:Q7VZZ8" FT /protein_id="CAE41022.1" FT /translation="MPRRDLLDLLALAAVWGGSFLFMRVAVPEFGPAALMELRVGLAAL FT FLLPLALWRGKPALIARHWKAILVVGTLNSALPFLLYAYAAQSLGAGFLSVANAVTPVW FT GAVIGWLWLGDRLPRMRALGLLISLSGIIVLVWDKLDFHDGGTGPAVLAAISAPVFYGM FT AANWTKRYLGHVDALTNATGSMVAASLVLAPLAIIHWPEQAVSFEAWRATVLLAIVCTG FT AAYIVFFRLIARVGPTAAVSVTFLVPVFGVLWGVWFLDEAVTPRILAGAGVILVGTALA FT LGLVGARRVAAAD" FT misc_feature complement(join(32982..33047,33063..33119,33141..33206, FT 33237..33302,33342..33395,33426..33476,33498..33563, FT 33579..33644,33681..33746,33759..33815)) FT /note="10 probable transmembrane helices predicted for FT BP0712 by TMHMM2.0 at aa 7-26, 30-52, 64-86, 91-113, FT 120-137, 147-165, 178-200, 210-232, 239-258 and 263-285" FT misc_feature complement(32988..33362) FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6" FT misc_feature complement(33426..33797) FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6" FT CDS complement(join(33852..34328,34346..35314)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0713" FT /product="putative membrane protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 323. The frameshift occurs within FT a dimeric tract of (TGGATTAt/cTCCCCGAGC)2. The sequence has FT been checked and believed to be correct. Similar to FT Burkholderia cepacia major facilitator superfamily FT transporter homolog OrfD TR:Q9RPH2 (EMBL:AF158699) (531 aa) FT fasta scores: E(): 1e-57, 41.492% id in 429 aa, and to FT Rhizobium loti Mlr6842 protein Mlr6842 TR:Q987Z4 FT (EMBL:AP003010) (529 aa) fasta scores: E(): 7.2e-38, FT 32.353% id in 442 aa" FT /db_xref="PSEUDO:CAE41023.1" FT misc_feature complement(join(33897..33953,33984..34049,34086..34151, FT 34164..34229)) FT /note="4 probable transmembrane helices predicted for FT BP0713 by TMHMM2.0 at aa 24-46, 50-72, 84-106 and 116-135" FT variation complement(34329..34362) FT /note="(TGGATTA(c/t)TCCCCGAGC)2 in pertussis; FT (TGGATTAcTCgCCGAGC)1 in parapertussis and bronchiseptica" FT misc_feature complement(join(34376..34441,34505..34570,34601..34657, FT 34697..34762,34778..34843,34883..34948,34961..35017, FT 35057..35122,35153..35218)) FT /note="9 probable transmembrane helices predicted for FT BP0714 by TMHMM2.0 at aa 32-54, 64-86, 99-118, 122-144, FT 157-179, 184-206, 219-238, 248-270 and 291-313" FT CDS complement(35353..35805) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0715" FT /product="putative membrane protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Pseudomonas carboxydovorans FT CoxG protein TR:Q9KX24 (EMBL:X82447) (205 aa) fasta scores: FT E(): 3.9e-07, 32.877% id in 146 aa, and to Rhizobium FT meliloti conserved hypothetical protein Smc01132 FT TR:CAC41825 (EMBL:AL591783) (152 aa) fasta scores: E(): FT 3e-08, 38.393% id in 112 aa" FT misc_feature complement(35359..35415) FT /note="1 probable transmembrane helix predicted for BP0715 FT by TMHMM2.0 at aa 118-137" FT CDS complement(35750..36748) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0716" FT /product="transposase (Pseudogene)" FT /note="Pseudogene. Transposase for IS481 element. The FT transposase lacks a stop codon, hence it is extended by 15 FT aa at its C-terminus" FT /db_xref="PSEUDO:CAE41025.1" FT repeat_region 35799..35829 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(35799..36850) FT misc_feature complement(35834..36367) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(36819..36850) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(36908..37780) FT /transl_table=11 FT /locus_tag="BP0718" FT /product="carboxyvinyl-carboxyphosphonate phosphorylmutase" FT /EC_number="2.7.8.23" FT /note="Similar to Streptomyces hygroscopicus FT carboxyvinyl-carboxyphosphonate phosphorylmutase BcpA FT SW:CPPM_STRHY (P11435) (294 aa) fasta scores: E(): 2.5e-36, FT 39.789% id in 284 aa, and to Sulfolobus solfataricus FT carboxyphosphonoenolpyruvate phosphonomutase PrpB TR:Q97VN2 FT (EMBL:AE006855) (285 aa) fasta scores: E(): 1e-39, 46.099% FT id in 282 aa" FT /db_xref="GOA:Q7VZZ7" FT /db_xref="HSSP:1UJQ" FT /db_xref="InterPro:IPR000918" FT /db_xref="UniProtKB/TrEMBL:Q7VZZ7" FT /protein_id="CAE41026.1" FT /translation="MSNSTKRVLRERVAQRNGMLVAGAFNAMSARIVADQGFEAVYLTG FT AGLTNMHYGAPDLGIIGLRDVADATSRIRDAVELPLIVDADTGFGNAVNVWHTVRVLER FT AGADAIQLEDQVFPKRCGHFAGKSVAPLSEMVSKIKAAADARRDEDFLIIARTDARAVE FT GFDAAIERARRFAEAGADILFVEAIVDQDEVGKLPQLLSQPLLVNIVVGGKTPPMPAAQ FT LGRLGYSVVLYANATLQGAVLGMQRALGALRRDGKLDEDPALLAPFLERQRLVGKPLYD FT ELEERYKDA" FT misc_feature complement(37298..37546) FT /note="HMMPfam hit to PF00463, Isocitrate lyase family" FT misc_feature complement(37679..37780) FT /note="Signal peptide predicted for BP0718 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.731) with cleavage site FT probability 0.411 between residues 34 and 35" FT CDS 38121..38339 FT /transl_table=11 FT /locus_tag="BP0720" FT /product="conserved hypothetical protein" FT /note="Similar to Thermoplasma volcanium Tvg1306680 protein FT TR:Q978Z7 (EMBL:AP000996) (64 aa) fasta scores: E(): 7.1, FT 33.333% id in 48 aa, and to Agrobacterium tumefaciens FT Agr_c_4413p TR:AAK88168 (EMBL:AE008157) (121 aa) fasta FT scores: E(): 1.3e-13, 59.375% id in 64 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VZZ6" FT /protein_id="CAE41027.1" FT /translation="MSRKYIDCREFPSEMNCSVALSADSDAELLEAAVQHATTVHKHAD FT TPELRAQLKTMFHEGTPPLAAQAGSRA" FT CDS complement(38379..39758) FT /transl_table=11 FT /locus_tag="BP0721" FT /product="probable aminotransferase" FT /note="Similar to Bilophila wadsworthia taurine:pyruvate FT aminotransferase TR:Q9APM5 (EMBL:AF269146) (456 aa) fasta FT scores: E(): 9.3e-99, 54.000% id in 450 aa, and to Bacillus FT subtilis probable aminotransferase YhxA SW:YHXA_BACSU FT (P33189) (450 aa) fasta scores: E(): 7.4e-62, 37.418% id in FT 457 aa" FT /db_xref="GOA:Q7VZZ5" FT /db_xref="HSSP:1DKA" FT /db_xref="InterPro:IPR015421" FT /db_xref="UniProtKB/TrEMBL:Q7VZZ5" FT /protein_id="CAE41028.1" FT /translation="MNDLATINDLHSVVEDDRNAIWHHMLQHDALQATAPWVVVEGKGT FT RIRDASGKEYLDATAGGFWTVNVGYGRERIANAMRDQMLKLNYFAQSAGNVPGALFARQ FT LVSKMPGMSRVYFSNSGSEANEKVFKMVRQISARHHAGRKYKILFRERDYHGSSIATLA FT AAGQPERAAQYGPFPDGFVQVPHCLEYRKQWDVANYGERAADAIEEVILREGPETVGLL FT CLEPITAGGGIIVPPEGYWRRVQEICRRYDVLLHIDEVVCGLGRTGKWFGYQHFDIEPD FT FVTLAKGTASGYAAIACTVTHERIFEQFKDEPDDPLSFFRDVSTFGGCAGSAAAALENL FT RILEEEGLVEHAAQVGDYLQACLRQLADKHAVIGDVRGKGLLQGVELVSDRAAKTPVSE FT ADAKRVVAQCKAQGVLIGVITRALPGLNTTLCLAPPLILTRDEVDELCGAIDRALATVF FT G" FT misc_feature complement(38481..39629) FT /note="HMMPfam hit to PF00202, Aminotransferase class-III" FT CDS complement(39800..41197) FT /transl_table=11 FT /locus_tag="BP0722" FT /product="probable amidase" FT /note="Similar to Bradyrhizobium japonicum indoleacetamide FT hydrolase Bam SW:HYIN_BRAJA (P19922) (465 aa) fasta scores: FT E(): 2.6e-45, 39.409% id in 406 aa, and to Streptomyces FT spR1128 enantiomer selective amidase ZhuL TR:Q9F6D0 FT (EMBL:AF293442) (507 aa) fasta scores: E(): 3.5e-27, FT 33.407% id in 452 aa" FT /db_xref="GOA:Q7VZZ4" FT /db_xref="InterPro:IPR000120" FT /db_xref="UniProtKB/TrEMBL:Q7VZZ4" FT /protein_id="CAE41029.1" FT /translation="MTSELWRLSACEIVAGVKSGAFSASEAVRAALDRMEAVNGRINAV FT VDSDPQAALAAAARVDARIAAGEDPGPLAGVPVTVKVTHDQAGFATTMGIRKLKDHRAA FT ANSPIVDNFERAGAIPIGRTNMPAFGLRWFTNGRLHGDTYNPFDRSLTPGGSSGGASAA FT VASGIGAIAHGTDIAGSIRYPAYACGVHGLRPTLGRIPNYNASFPERGLGGQLMSVSGP FT LARTVADIELSFAALAHADPRDPWWVPAPLAGPARPRRVALCLRPDGLEIDAAVADALL FT DAAARLRDAGWEVAELDDIPPMRDAAVAQVTLWLGDEYPALLAEAQAEGDPGALAMLRG FT QPQSAGVTLQSYCSALKARASYLRQWMLFFEDYPLMMLPVSARLTFANDLDTRSAADYD FT SVWEAQMPQLGLAFMGLPCMSVATGMCGSAPVGIQLAAGRYREDLLFLAAEDIAARGMP FT PVPVDPV" FT misc_feature complement(40292..41122) FT /note="HMMPfam hit to PF01425, Amidase" FT misc_feature complement(40643..40738) FT /note="ScanRegExp hit to PS00571, Amidases signature. FT Confirmed by InterPro eMOTIF pattern match." FT CDS complement(41237..42889) FT /transl_table=11 FT /locus_tag="BP0723" FT /product="probable ABC transporter, ATP-binding protein" FT /note="Similar to Rhizobium meliloti probable ABC FT transporter, ATP-binding protein Sma1434 TR:AAK65441 FT (EMBL:AE007265) (550 aa) fasta scores: E(): 1e-76, 46.125% FT id in 542 aa, and to Agrobacterium tumefaciens Agr_l_3504p FT TR:AAK90329 (EMBL:AE008378) (575 aa) fasta scores: E(): FT 7.1e-84, 48.780% id in 533 aa" FT /db_xref="GOA:Q7VZZ3" FT /db_xref="InterPro:IPR013563" FT /db_xref="UniProtKB/TrEMBL:Q7VZZ3" FT /protein_id="CAE41030.1" FT /translation="MIFRKRDLQHRPVVLRIAGLSLVDGQPGAGSAILRDIDVDIRQGE FT TVCLVGESGSGKSMTSLAVMGLLPKGHLRVTGGRIELDGQNLLDLGPAALRDLRAKRIS FT MIFQEPMTALNPVMKVGPQIEEVLDSHTALPRREKKQRVLDIMEQVHLPDVARIYESYP FT HQLSGGQRQRIMIAMALVLEPRLLIADEPTTALDVTTQNQVLKLISELQHKHDTAVLFI FT THDMGVVAEIADRVYVMRLGEIVESAPVEQLLREPRQDYTRKLLKSVPSLIPRPGRAAP FT QACATLQVQGLAKRYAMGGFPGRRREVQAAHDVAFSIQPGRTLGIVGESGSGKSTVARC FT VMRLIEPSEGAIRVGDADIARLGPRQLKPFRKHLQIVFQDPYRSLNPRRTIGASLIEGP FT VNFGQDRQAALAQAAELLELVGLPADALARYPHQFSGGQRQRIAIARAIAMRPDVLVAD FT EAVSALDVSVQAQVLELLDTLQRKLDIAILFITHDLRVAAQICDEVMVMRHGRVVEHDT FT AENVLARPAHAYTRALIEAAPGRDWDFANFRER" FT misc_feature complement(41360..41929) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(41546..41590) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(41885..41908) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(42164..42760) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(42350..42394) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(42716..42739) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(42893..43777) FT /transl_table=11 FT /locus_tag="BP0724" FT /product="probable ABC transporter, permease protein" FT /note="Similar to Rhizobium sp probable peptide ABC FT transporter permease protein Y4tQ SW:Y4TQ_RHISN (Q53192) FT (291 aa) fasta scores: E(): 1.4e-52, 53.307% id in 257 aa, FT and to Rhizobium loti ABC transporter, permease protein FT mlr6290 TR:Q989T2 (EMBL:AP003008) (280 aa) fasta scores: FT E(): 5.7e-46, 47.547% id in 265 aa. Also similar to several FT B. pertussis CDSs such as BP3161 (57.348% identity in 279 FT aa overlap), BP1825 (57.977% identity in 257 aa overlap), FT BP3459 (55.725% identity in 262 aa overlap), P2592 (40.304% FT identity in 263 aa overlap)" FT /db_xref="GOA:Q7VZZ2" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7VZZ2" FT /protein_id="CAE41031.1" FT /translation="MTTLPQPASALQAVFRVTQLPAWCRFGWPPIAAALVLAVLVLATA FT AAYLYIPHDPIAINPLMRLKPASADHWLGTDALGRDVFSRVMAGGQVSLLVGVAAAVIS FT IAAGLCIGLVSGFFRVLDGVVMRITDAVMSVPSILLAIALVALNGPSIWSVIIAITVPE FT VPRVVRLVRSVVLSAREEPYVEAALALGTSMPGILWRHIMPNTLAPLMVQATYVCASAI FT LTEAVLSFLGAGVSTEIPTWGNIMAEARMYFQIRPGLMLWPGLLLSLCILSINLLGDTA FT RDMLDPRLKRRGE" FT misc_feature complement(join(42944..43000,43061..43126,43301..43366, FT 43427..43492,43622..43687)) FT /note="5 probable transmembrane helices predicted for FT BP0724 by TMHMM2.0 at aa 30-52, 95-117, 137-159, 217-239 FT and 259-278" FT misc_feature complement(43034..43255) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature complement(43166..43252) FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign." FT CDS complement(43777..44718) FT /transl_table=11 FT /locus_tag="BP0725" FT /product="probable ABC transporter, permease protein" FT /note="Similar to Rhizobium sp probable peptide ABC FT transporter permease protein Y4tP SW:Y4TP_RHISN (Q53191) FT (313 aa) fasta scores: E(): 3.2e-65, 54.839% id in 310 aa, FT and to Rhizobium loti ABC transporter, permease protein FT Mlr6289 TR:Q989T3 (EMBL:AP003008) (314 aa) fasta scores: FT E(): 5e-52, 47.284% id in 313 aa. Also similar to several FT B. pertussis CDSs such as BP3160 (58.147% identity in 313 FT aa overlap), BP3458 (54.633% identity in 313 aa overlap), FT BP1824 (53.922% identity in 306 aa overlap), BP2395 FT (44.268% identity in 314 aa overlap), and BP2691 (40.256% FT identity in 313 aa overlap)" FT /db_xref="GOA:Q7VZZ1" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7VZZ1" FT /protein_id="CAE41032.1" FT /translation="MFGYILRRVLATIPVVVIVAVFVFLLLRLTPGDAAAIIAGDSATP FT AQIENIRKSLGLTEPLTVQFRTWMTQLASGDLGTSIISRQPVTKLIGQRVGPTLQIATL FT TIILSVLIAVPLGVLAAWRHRSWLDYAVMAFSVIGFSIPAFVVGYILMKIFAVDLRWLP FT VQGFTSVFQDPQQFLCTAVLPCMTLATVFVALIARMTRASMLDVLGEDYIRTARAKGVK FT ERIVLFRHALGNAAVPIVTIIGTGFALLIVGVVVTESVYNIPGIGRLTVDAVLARDYPV FT IQAMILLTSALYVFINLLIDLSYTIFDPRIRY" FT misc_feature complement(join(43798..43863,43957..44022,44131..44187, FT 44248..44313,44353..44418,44638..44703)) FT /note="6 probable transmembrane helices predicted for FT BP0725 by TMHMM2.0 at aa 5-27, 100-122, 135-157, 177-196, FT 232-254 and 285-307" FT misc_feature complement(43894..44109) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT CDS complement(44797..46416) FT /transl_table=11 FT /locus_tag="BP0726" FT /product="probable ABC transporter, periplasmic binding FT protein" FT /note="Similar to Rhizobium sp probable peptide ABC FT transporter periplasmic binding protein Y4tO precursor FT SW:Y4TO_RHISN (P55669) (531 aa) fasta scores: E(): 5.6e-64, FT 37.786% id in 524 aa, and to Bradyrhizobium japonicum FT putative ABC transporter TR:Q9RH65 (EMBL:AF065159) (516 aa) FT fasta scores: E(): 1.1e-62, 37.670% id in 515 aa" FT /db_xref="GOA:Q7VZZ0" FT /db_xref="InterPro:IPR000914" FT /db_xref="UniProtKB/TrEMBL:Q7VZZ0" FT /protein_id="CAE41033.1" FT /translation="MFIARNAADPAVKIRAGARLAAVAAALCGLAATVPAAAQAPKTVT FT AVMHSGLRVLDPIITTAHITRNHGYMIYDVLVSMDKDFNVRPQMADFSVSPDGLTYTFT FT LRENLWFHDGAPVTAADVVASLKRWGERDTGGQHIFDQTESLAATDARTITWKLSKPFG FT PMLETLGKQSTVPPFIMPKRVARTPSSEAITDYTGSGPFRFVLDEFSPGVKVAYAKFDK FT YVPRNEPANWMAGGKVVKVDRANWVTMPDAQTAVSALSSGEIDYLEQTPTDLLPILESN FT ADVVLEVRDQLGYQALGRMNFKQPPFNDKRIRQAALKAMSQEPILAAMVGNPKYYQVCG FT AVLGCGTPLASEAGAGALTGKGDVEGARALLKEAGYDGSPVVILQPTDVPILAAPPLVA FT AQQLRAAGFKVDLQPMDWQTLVTRRTNKGAPSQGGWSMFFSYWMVPEVTTPLINATLNA FT RGDEGFFGWAQDPELEAMRGEYITAGSPQAQLDVAKRIQARVMDEVTYLPLGQFQTVQG FT RRANLVDIIASPVPVFWQMDKK" FT misc_feature complement(45472..45702) FT /note="HMMPfam hit to PF00496, Bacterial extracellular FT solute-binding proteins, family 5" FT misc_feature complement(46033..46365) FT /note="HMMPfam hit to PF00496, Bacterial extracellular FT solute-binding proteins, family 5" FT misc_feature complement(46300..46356) FT /note="1 probable transmembrane helix predicted for BP0726 FT by TMHMM2.0 at aa 20-39" FT misc_feature complement(46303..46416) FT /note="Signal peptide predicted for BP0726 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.895 between residues 38 and 39" FT CDS 46583..47398 FT /transl_table=11 FT /locus_tag="BP0727" FT /product="probable transcriptional regulator" FT /note="Similar to Rhodococcus opacus putative regulator of FT catechol degradative operon CatR TR:O33539 (EMBL:X99622) FT (256 aa) fasta scores: E(): 1.1e-17, 33.468% id in 248 aa, FT and to Alcaligenes eutrophus hypothetical 30.8 kDa protein FT TR:Q9L789 (EMBL:AF225972) (279 aa) fasta scores: E(): FT 3.4e-22, 33.871% id in 248 aa" FT /db_xref="GOA:Q7VZY9" FT /db_xref="InterPro:IPR005471" FT /db_xref="UniProtKB/TrEMBL:Q7VZY9" FT /protein_id="CAE41034.1" FT /translation="MRRSIVNSELGVRSPTEEELEDPLFVQAAARTLQVLSAFHRAVRP FT MSLDEIAEASGVGRSSTQRILNTLRVLGYVERSDGGRGYVPGIRILDHALDYLRLNTLI FT SRASPVLLDLRRNALERVDLSVFDDLRLVYASRLQSKRETFFATLVGHSVPTFCTAGGR FT AILSHLPGAEVDDIIARSDRAPFTDKTITALREIRKKVEQARVSGYAVTIEEVLVGEIG FT IGVAVLGADGRPVGAIHIAGSLSEWTPEAFTARFAPLAVEAATAINRLS" FT misc_feature 46718..46783 FT /note="Predicted helix-turn-helix motif with score 1461 FT (+4.16 SD) at aa 46-67, sequence MSLDEIAEASGVGRSSTQRILN" FT misc_feature 46832..47392 FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator" FT CDS complement(47466..48035) FT /transl_table=11 FT /locus_tag="BP0728" FT /product="probable transcriptional regulator" FT /note="Similar to Streptomyces roseosporus TetR homologue FT WhiR TR:P72569 (EMBL:U58281) (179 aa) fasta scores: E(): FT 0.00038, 28.814% id in 118 aa, and to Pseudomonas FT aeruginosa probable transcriptional regulator Pa1283 FT TR:Q9I461 (EMBL:AE004558) (186 aa) fasta scores: E(): FT 8.1e-17, 32.973% id in 185 aa. IS481 inserted immediately FT upstream of the start codon. It is not clear whether this FT insertion has any effect on the expression of this gene" FT /db_xref="GOA:Q7VZY8" FT /db_xref="InterPro:IPR012287" FT /db_xref="UniProtKB/TrEMBL:Q7VZY8" FT /protein_id="CAE41035.1" FT /translation="MVRPRTIDRERLLDIAESIISEAGAVTISFGGLAEAAGLSKASVQ FT SVFGTREAMMEALLERWLRKEQRAYQKKIGPQSSLRERVRRHVKITGKESSEANSRLAA FT VLTALVGSDATEGVMAKWYASRVGKFSAETQEERLLRIAFLAAEGAFFMRHVAGFPMSD FT RLWRELFHDLLDFVAEPVGGAARSAA" FT misc_feature complement(47889..47954) FT /note="Predicted helix-turn-helix motif with score 1201 FT (+3.28 SD) at aa 28-49, sequence ISFGGLAEAAGLSKASVQSVFG" FT CDS complement(48036..48986) FT /transl_table=11 FT /locus_tag="BP0729" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q84CT8" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q84CT8" FT /protein_id="CAE41036.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT repeat_region 48036..48067 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(48036..49088) FT misc_feature complement(48072..48605) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(48663..48728) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(49057..49088) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 49641..50738 FT /transl_table=11 FT /gene="nspC" FT /locus_tag="BP0731" FT /product="carboxynorspermidine decarboxylase" FT /note="Similar to Vibrio alginolyticus carboxynorspermidine FT decarboxylase NspC TR:Q56575 (EMBL:D31783) (377 aa) fasta FT scores: E(): 1.4e-71, 52.291% id in 371 aa, and to FT Rhizobium meliloti putative carboxynorspermidine FT decarboxylase protein TR:CAC49950 (EMBL:AL603647) (365 aa) FT fasta scores: E(): 6.7e-103, 69.041% id in 365 aa" FT /db_xref="GOA:Q7VZY7" FT /db_xref="InterPro:IPR005730" FT /db_xref="UniProtKB/TrEMBL:Q7VZY7" FT /protein_id="CAE41037.1" FT /translation="MLKTPYYLIDKRALLQNLEVIRRIRERSGAKVLLALKCFATWSVF FT DLMREYMDGTTSSSLFEVRLGREKFGGETHAYSVAYAEDDIDDVVACADKIIFNSLSQL FT ERYAPRASAIPRGLRLNPGISVSGYDLANPARPFSRLGETDLDRIAQAMPMIDGFMVHN FT NCENRDFTRFDALLTELEHRYGHLLGQINWISLGGGIHFTEPGYALDAFCDRLRRFSEQ FT YGVQVYLEPGEAAITNTATLEVTVLDVMRNEKNLAIVDAATEAHMLDLLIYRMSARVQP FT DQGPHRYVIYGNSCLAGDVFGEFSFESPLQPGSRISIQDAAGYTMVKKNWFNGVRMPAI FT AIRELDGEIRLVREFGYQDYVDSLS" FT CDS 50772..52037 FT /transl_table=11 FT /locus_tag="BP0732" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Smb21630 TR:CAC49949 (EMBL:AL603647) (413 aa) fasta FT scores: E(): 2.6e-117, 67.317% id in 410 aa, and to FT Agrobacterium tumefaciens Agr_l_1365p TR:AAK89265 FT (EMBL:AE008267) (412 aa) fasta scores: E(): 4.7e-117, FT 67.317% id in 410 aa" FT /db_xref="GOA:Q7VZY6" FT /db_xref="InterPro:IPR005097" FT /db_xref="UniProtKB/TrEMBL:Q7VZY6" FT /protein_id="CAE41038.1" FT /translation="MKRNVLIIGAGGVAHVVAHKCAQHNATLGEIHIASRTLDKAQGIV FT RSVHAMGNLQTNGVVKAHGLNALDIKATAALIRATNARIVIQAGTSFLNMAVLAACIET FT GAAYIDTAIHEDPAKTCEAPPWYANYEWKQAQACADAGVTAILGAGFDPGVVNAYAKLA FT VDELFDEVSSIDIIDTNAGSHGKYFATNFDPEINFREFTGSVWSWQEGRWCENRMFEEQ FT RAWDLPVVGRQTTYLTGHDEIHSLSTHLNVPNIRFWMGFSDHYINVFTVLNSLGLLSEQ FT PVRTAEGQQVVPLKVVKAVLPDPASLARTYKGKTCIGDLVRGVKDGRPHEVLIYNVCDH FT EQAYREVGSQAISYTAGVPATAAALLIADGAWDNRKMNNIEQLAPRPWLQLLETMGLPS FT RIRDAHGDRALLSPCGKLLKAA" FT misc_feature 50772..50831 FT /note="Signal peptide predicted for BP0732 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.648) with cleavage site FT probability 0.520 between residues 20 and 21" FT misc_feature 51693..51716 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT repeat_region 52093..52124 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 52093..53145 FT CDS 52195..53145 FT /transl_table=11 FT /locus_tag="BP0733" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE41039.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 52453..52518 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 52576..53109 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(53114..53145) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 53187..53342 FT /transl_table=11 FT /locus_tag="BP0734" FT /product="hypothetical protein" FT /note="no significant database matches" FT /db_xref="InterPro:IPR000215" FT /db_xref="UniProtKB/TrEMBL:Q7VZY5" FT /protein_id="CAE41040.1" FT /translation="MAISTLGPTAPGGLHWCRQRNAVAVSYGYRFNRTFLILMPCPGGQ FT LAWPPP" FT misc_feature 53271..53303 FT /note="ScanRegExp hit to PS00284, Serpins signature." FT CDS 53389..53979 FT /transl_table=11 FT /locus_tag="BP0735" FT /product="putative exported protein" FT /note="Similar to Xylella fastidiosa hypothetical protein FT Xf1840 TR:Q9PCE1 (EMBL:AE004005) (237 aa) fasta scores: FT E(): 4e-29, 47.486% id in 179 aa, and to Zymomonas mobilis FT hypothetical 22.3 kDa protein zm10orf9 TR:Q9XBR4 FT (EMBL:AF157493) (204 aa) fasta scores: E(): 1.4e-18, FT 34.807% id in 181 aa" FT /db_xref="InterPro:IPR007372" FT /db_xref="UniProtKB/TrEMBL:Q7VZY4" FT /protein_id="CAE41041.1" FT /translation="MKKNYPAYFAATLLALAGLSAQAAPVDYRIDPEHTEVVVTWDHLG FT FSKPTAHAGGVTGVVRYDAASPADSAVDLRIPVSKLTSHVPKLDGMLQGVQFFEAARYP FT DIRFKSTSVTDRGDGRLQIDGILRIKGIDKPVVLQARRNGQGMHPMAQRPAIGFDATTT FT LKRSDFGVDAFAPDVSDEVQLRITIEAVAEAAR" FT misc_feature 53389..53457 FT /note="Signal peptide predicted for BP0735 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 23 and 24" FT CDS complement(53995..56439) FT /transl_table=11 FT /gene="bfrF" FT /locus_tag="BP0736" FT /product="putative ferric siderophore receptor" FT /note="Similar to Escherichia coli ferrichrome-iron FT receptor precursor FhuA or TonA or B0150 SW:FHUA_ECOLI FT (P06971) (747 aa) fasta scores: E(): 7.8e-38, 40.000% id in FT 725 aa, and to Pseudomonas aeruginosa probable FT hydroxamate-type ferrisiderophore receptor Pa0470 TR:Q9I648 FT (EMBL:AE004484) (802 aa) fasta scores: E(): 1.4e-103, FT 40.000% id in 815 aa" FT /db_xref="GOA:Q7VZY3" FT /db_xref="HSSP:1BY5" FT /db_xref="InterPro:IPR010105" FT /db_xref="UniProtKB/TrEMBL:Q7VZY3" FT /protein_id="CAE41042.1" FT /translation="MVITFNLFSVKHSMRARPSAATRALHSSSRPRRLIPALLGALACL FT GTGVQAAPIDVDIPPQNLAQALHQLGRQANLQVLYSQDLVDGQRSPAVQGRMEPAEALE FT RLLKGRNIRYSIQHNTVTLTPMPLTATLPAISVVGALPDSDTYVATGTTAGTKTDTPLI FT EIPQSISVVTAAQIREQNPQTLGDAVRYTPGIVVQEGFNRTDDPFIIRGFDVRTNPGVM FT FRDGLKIPLPHYSAMSEPYALERIEVVKGPASVLYGQASPGGIVNVVSKRPTDSPLREL FT QLSGGSHSNRQLAGDFGGRIDDEGRLTYRLTGLARNADTMIDHVPDDRYYLAPALTWRI FT SPDTSLTLLASYMKNKTINNAGYPLEGTVKYNPNGRIPRHRFTGEPDWSKWDQEVANVG FT YQFAHRFNDTWQFKQNLGYAQSRNRVNHAYWWTWVPGSDFSTAERGAYRRDDDAHGVSI FT DNQFEATWQSGRFRHNTLFGLDYTETSFTRKQYAGYNNLAPIDFFDPAYGSDVLLPAKP FT DTYTNEKRSQLGLYLQDQIKFDDKLVVVLSGRYDNADGSTLNKLSGVNTRTGDNAFTWR FT TGLLYLADNGLAPYTSYSTSFQPQAGTTSPARGTTPFDPTKGKQWEAGVKYQPNGSNSF FT ITASVFELTRTNVPTTDPANPVYSVQEGEVRSRGLELSATANLASGWNLIAAYTYTDAE FT ITKSNSNTLGNTPEAVPRNMASLWSDYTVPSGALAGLNIGAGVRYMGSTYNNTNAAKVG FT DYTVFDAALRYDFGARSPSLKGWTADLTVRNLFDKDYVASCTYACFYGEGRTVLGRVTY FT KW" FT misc_feature complement(53998..54327) FT /note="HMMPfam hit to PF00593, TonB dependent receptor FT C-terminal region" FT misc_feature complement(56287..56439) FT /note="Signal peptide predicted for BP0736 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 51 and 52" FT misc_feature complement(56308..56340) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(56559..57530) FT /transl_table=11 FT /locus_tag="BP0737" FT /product="putative inner membrane sensor for iron FT transport" FT /note="Similar to Bordetella bronchiseptica putative inner FT membrane sensor BupR TR:Q9L429 (EMBL:AJ251793) (344 aa) FT fasta scores: E(): 7.6e-19, 33.025% id in 324 aa, and to FT Pseudomonas aeruginosa probable transmembrane sensor Pa2388 FT TR:Q9I192 (EMBL:AE004665) (331 aa) fasta scores: E(): FT 3.9e-47, 44.377% id in 329 aa" FT /db_xref="InterPro:IPR012373" FT /db_xref="UniProtKB/TrEMBL:Q7VZY2" FT /protein_id="CAE41043.1" FT /translation="MAVPPSKQDDLLTEQAVQWCVRIHDACCSEQDRAALQAWLEADPR FT HAREYEAVRDIWTLAQDLPAHEAPAKACAPRRRPYPAARRALGACALGLACWAAGWWFA FT VLPSSYHRYASDARVATVTLGDGTEVDMNIDTAMVYRNYRDARRVRLSDGEAYFRVFHD FT ASHPFVVEAGAGTITVTGTAFNVWKSGDNVVVTLVEGRVDLRASATGKTVSLQPLTQAR FT YAGRGEPVTRAVDGAQSAAWRHGKLVLDNTTLRDAIMQINRYLPAEARYTAVDPAIAGL FT RLGGTYDVRNVGELARALPDILPVRTVRKADGSLALVPNPPR" FT misc_feature complement(57216..57272) FT /note="1 probable transmembrane helix predicted for BP0737 FT by TMHMM2.0 at aa 86-105" FT CDS join(57662..58117,58117..58149) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0738" FT /product="ECF-family sigma factor Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 152. The sequence has been checked FT and believed to be correct. Similar to Bordetella FT bronchiseptica putative Ecf sigma factor BupI TR:Q9L430 FT (EMBL:AJ251793) (177 aa) fasta scores: E(): 6.1e-14, FT 37.419% id in 155 aa, and to Escherichia coli probable RNA FT polymerase sigma factor FecI or B4293 SW:FECI_ECOLI FT (P23484) (173 aa) fasta scores: E(): 1.2e-10, 34.507% id in FT 142 aa" FT /db_xref="PSEUDO:CAE41044.1" FT misc_feature 57689..57853 FT /note="HMMPfam hit to PF00776, Sigma-70 factor (ECF FT subfamily)" FT misc_feature 58025..58090 FT /note="Predicted helix-turn-helix motif with score 996 FT (+2.58 SD) at aa 134-155, sequence MSHDEIANSLGISVDMVHKHLT" FT variation 58118 FT /note="T in pertussis; (A)T in parapertussis and FT bronchiseptica" FT CDS complement(58146..59096) FT /transl_table=11 FT /locus_tag="BP0739" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE41045.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 58146..58177 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(58146..59198) FT misc_feature complement(58182..58715) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(58773..58838) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(59167..59198) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(59193..59231) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0739A" FT /product="transposase (pseudogene)" FT /note="transposase fragment for IS481-like element" FT repeat_region complement(59193..59321) FT /note="Fragment of a IS481-like element" FT repeat_region 59293..59321 FT /note="Inverted repeat for IS481-like element" FT CDS complement(59318..61513) FT /transl_table=11 FT /locus_tag="BP0740" FT /product="putative DNA methylase" FT /note="no significant database matches" FT /db_xref="GOA:Q7VZY1" FT /db_xref="InterPro:IPR014455" FT /db_xref="UniProtKB/TrEMBL:Q7VZY1" FT /protein_id="CAE41047.1" FT /translation="MPPPSRKPAAPRRVRRPAAAPVPRLAPVAGPGRLIDEGLSFYEAS FT LAGKAERYGRGETPHTIHVWWARRPHSAMRALVYAALRAPADKRAAARLSELGATPVPQ FT PGLLAEAAAELAGQYGGAPRVLDMFGGGGTIAFEAALLGCDAHSIDVNELAVFLQQANL FT TYGATLDHGLLKQLAHRHGQAVLQRLARRTETLYPLRGRLASQAEKPIVYLWTYRHACP FT QCGYAYTLSRRPWLSKKAGKALAMVATPGPDGDGVDMVSLPDGEPPPSRWAGRGATACP FT RCSATATPGIADSADHCVAVVTSAGVGKQFALRDDALPAAGLLREQEETLLQRTGLALP FT ATTLPAWSGIVNPALYGMRGHADLFNPRQRLVTLMLLEELLAEHRTLQAAHGADVARFV FT SASLSGLIDQMVDWNCRLSMWIPQNEQVGRAFCGPGVAMLWDYAEVDPVGTGPGNLHAK FT LERICAGIDALALLRRPVQVQRASAAALPYPDDSFDAIVTDPPYYDNIFYSVLADFFYA FT WKKPLIDAIENRPTTPPHVPTANSGHDELVASRQRAGGSARAAHDEYCARLGQALREAA FT RVLKPDGLLAFVYSHASVLGWAALVTAFRAAPFTINSVQPLSIERKARPRALASEAVNT FT CTTFVARRAQAPRPVLARAALQAQFDAILRGGLHRSLLRAGWHEHDAGVALIAQGVALL FT ANCAAVEDADTAALIVDLAGQVSALLPGFSIKQRASL" FT misc_feature complement(60008..60028) FT /note="ScanRegExp hit to PS00092, N-6 Adenine-specific DNA FT methylases signature." FT CDS complement(61586..62014) FT /transl_table=11 FT /locus_tag="BP0741" FT /product="putative transcriptional regulator" FT /note="Similar to Bacteriophage 434 repressor protein CI FT SW:RPC1_BP434 (P16117) (94 aa) fasta scores: E(): 1.2, FT 35.088% id in 57 aa, and to Bacillus subtilis hypothetical FT 15.6 kDa protein TR:O52855 (EMBL:U09819) (139 aa) fasta FT scores: E(): 0.38, 33.333% id in 69 aa. It's possible that FT the upstream IS481 element has inserted within the FT N-terminus of this CDS. Also similar to BP0744, 65.972% FT identity (70.370% ungapped) in 144 aa overlap." FT /db_xref="GOA:Q7VZY0" FT /db_xref="InterPro:IPR001387" FT /db_xref="UniProtKB/TrEMBL:Q7VZY0" FT /protein_id="CAE41048.1" FT /translation="MKKFSDRLKHARRLRQLSQENLAHISGLSQSAVASYENGLRQSSR FT SIRKLAIALQVNLDWFETGVGPMELEAYPSGPAAWRPGLMEPGGERAAAPWPFRAVAHA FT RYQALSARDKLLLEQLVRTFIDACHADYGRAPPWPRER" FT misc_feature complement(61832..61993) FT /note="HMMPfam hit to PF01381, Helix-turn-helix" FT misc_feature complement(61901..61966) FT /note="Predicted helix-turn-helix motif with score 1793 FT (+5.29 SD) at aa 45-66, sequence LSQENLAHISGLSQSAVASYEN" FT repeat_region 62014..62045 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 62014..62416 FT CDS join(62116..62415,62418..62510,62510..62686,62686..63063) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0742" FT /product="transposase (Pseudogene)" FT /note="Pseudogene. This CDS appears to have three FT frameshift mutations. Transposase for IS481 element" FT /db_xref="PSEUDO:CAE41049.1" FT repeat_region 62417..62511 FT repeat_region 62504..62685 FT repeat_region 62681..63063 FT misc_feature 62713..63027 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(63032..63063) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(63179..63622) FT /transl_table=11 FT /locus_tag="BP0744" FT /product="putative transcriptional regulator" FT /note="Similar to Bacteriophage 434 repressor protein CI FT SW:RPC1_BP434 (P16117) (94 aa) fasta scores: E(): 0.021, FT 37.097% id in 62 aa, and to Bacillus subtilis hypothetical FT transcriptional regulator YqaE yqaE SW:YQAE_BACSU (P45902) FT (116 aa) fasta scores: E(): 0.058, 27.083% id in 96 aa. FT Also similar to BP0741, 65.972% identity (70.370% ungapped) FT in 144 aa overlap." FT /db_xref="GOA:Q7VZX9" FT /db_xref="InterPro:IPR001387" FT /db_xref="UniProtKB/TrEMBL:Q7VZX9" FT /protein_id="CAE41050.1" FT /translation="MKTFSDRLKHARALRSLTQQDLARASGLSQSAVASYENGQRQSSR FT SVRKLAAALQVNLDWLETGKGSMESLADYSASPAGGAYYLMEPGSGEAPPRALPPWPFT FT TIARAQYEALAARDKRLLEQMLRSFVEACHAEYADGRGRARKH" FT misc_feature complement(63440..63601) FT /note="HMMPfam hit to PF01381, Helix-turn-helix" FT misc_feature complement(63509..63574) FT /note="Predicted helix-turn-helix motif with score 2149 FT (+6.51 SD) at aa 17-38, sequence LTQQDLARASGLSQSAVASYEN" FT CDS 63730..64479 FT /transl_table=11 FT /locus_tag="BP0745" FT /product="putative transcriptional regulator" FT /note="Similar to Neisseria cinerea BasR TR:Q9F9Y4 FT (EMBL:AF139614) (222 aa) fasta scores: E(): 0.17, 28.729% FT id in 181 aa, and to Bordetella pertussis transcriptional FT regulatory protein, putative BasR TR:Q9S3M3 (EMBL:AJ132741) FT (223 aa) fasta scores: E(): 0.0027, 28.319% id in 226 aa" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VZX8" FT /protein_id="CAE41051.1" FT /translation="MLAFSSVMIEARVQLEAGWRQAGWIVDWCEGQHALARLLAMHPPD FT AVALCGVAGTLSGLVRTTRTSVPAAVVVALLSEGGLPERIAMMRAGVDLCWPIETQVEE FT VAAMVDAFARRGTASAAAASAWYLSNAGRVLAGPGGVRLPLTVAEREFMARLLAAPGHR FT LARQQLACGFRQRGVQDGAPVSSEVLPSWTANSSHAASYDAAAGLSRNVDVMVSRLRAK FT AQRMGINLPLLSVRRWGYLFIADSDAG" FT CDS complement(64645..65721) FT /transl_table=11 FT /gene="proB" FT /locus_tag="BP0746" FT /product="glutamate 5-kinase" FT /EC_number="2.7.2.11" FT /note="Similar to Escherichia coli glutamate 5-kinase ProB FT or B0242 or Z0303 or Ecs0269 SW:PROB_ECOLI (P07005) (367 FT aa) fasta scores: E(): 1.2e-47, 42.697% id in 356 aa, and FT to Pseudomonas aeruginosa glutamate 5-kinase ProB or Pa4565 FT SW:PROB_PSEAE (Q9HVL9) (372 aa) fasta scores: E(): 6.1e-79, FT 61.064% id in 357 aa" FT /db_xref="GOA:Q7VZX7" FT /db_xref="InterPro:IPR002478" FT /db_xref="UniProtKB/Swiss-Prot:Q7VZX7" FT /protein_id="CAE41052.1" FT /translation="MGSSLVTNEGRGLDRAAVGHWAAQIAALHQQGKQVVLVSSGAIAE FT GMARLGWRKRPSAMHELQAAAAVGQMGLCQAYEAAFAEFGLRTAQILLTHEDLADRHRY FT LNARSTLFALLRLGVVPIVNENDTVVTDEIRFGDNDTLGALVTNLIEADALIILTDQRG FT LYEADPRRDPAARFVAHAQAGDAALEAMAGGAGSGVGTGGMLTKILAAKRAAHSGAHTV FT IASGRERNVLTRLAQGECIGTELRAVLPVWSARKQWLADHLRLRGRVVLDDGAVHALLH FT EGKSLLPIGVAEVQGEFERGDVVACVDMHGRECARGLINYSSADTRRILRQPSSQIARI FT LGSMTDPELMHRDNLVVT" FT misc_feature complement(64699..64923) FT /note="HMMPfam hit to PF01472, PUA domain" FT misc_feature complement(64867..64890) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(65080..65133) FT /note="ScanRegExp hit to PS00902, Glutamate 5-kinase FT signature." FT misc_feature complement(65161..65739) FT /note="HMMPfam hit to PF00696, Amino acid kinase family" FT CDS complement(65852..66985) FT /transl_table=11 FT /locus_tag="BP0747" FT /product="probable GTP-binding protein" FT /note="Similar to Burkholderia pseudomallei GTP-binding FT protein TR:Q9FD27 (EMBL:AF292383) (372 aa) fasta scores: FT E(): 2.6e-86, 63.947% id in 380 aa, and to Neisseria FT meningitidis GTP-binding protein Nmb2086 TR:Q9JXE5 FT (EMBL:AE002558) (384 aa) fasta scores: E(): 3.1e-77, FT 58.639% id in 382 aa" FT /db_xref="GOA:Q7VZX6" FT /db_xref="HSSP:1JAL" FT /db_xref="InterPro:IPR002917" FT /db_xref="UniProtKB/TrEMBL:Q7VZX6" FT /protein_id="CAE41053.1" FT /translation="MKFVDEATIEVIAGKGGNGVASFRREKFIPKGGPDGGDGGRGGSI FT YAVADRNINTLIDFRYARLHRAKNGENGRGSDQYGAAAPDITLRVPVGTVVHDADTGEV FT LFDLDRHDQKVTLAAGGAGGMGNIHFKSSTNRAPRQWTPGKEGEQRRLRMELKVLADVG FT LLGLPNAGKSTLISRISNARPKIADYPFTTLHPNLGVVRTSPSRSFVVADIPGLIEGAS FT EGAGLGHLFLRHLARTRVLLHLVDISSPDPEADPIEQAVVDANAIVEELRRYDPELAAK FT PRWLVLNKLDMVPDAQDAQQRFCAEFGWTGPVFAISGLNGEGTQDLIWALQDYLDAEKR FT KDQDAQDQADGTYVFEDPRFDASRGGAAPATPPGGDE" FT misc_feature complement(65993..66940) FT /note="HMMPfam hit to PF01018, GTP1/OBG family" FT misc_feature complement(66308..66349) FT /note="ScanRegExp hit to PS00905, GTP1/OBG family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(66467..66490) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(67135..67395) FT /transl_table=11 FT /gene="rpmA" FT /locus_tag="BP0748" FT /product="50S ribosomal protein L27" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L27 RpmA or B3185 SW:RL27_ECOLI (P02427) (84 aa) fasta FT scores: E(): 2.8e-21, 71.084% id in 83 aa, and to Vibrio FT cholerae ribosomal protein L27 Vc0436 TR:Q9KUS9 FT (EMBL:AE004131) (86 aa) fasta scores: E(): 5.1e-23, 73.256% FT id in 86 aa" FT /db_xref="GOA:Q7VZX5" FT /db_xref="InterPro:IPR018261" FT /db_xref="UniProtKB/Swiss-Prot:Q7VZX5" FT /protein_id="CAE41054.1" FT /translation="MAQKKGGGSTRNGRDSESKRLGVKVYGGQSILAGSIIVRQRGTRF FT HPGVNVGVGKDHTLFALANGKVHFSVKGALNKPTVSVVAAE" FT misc_feature complement(67147..67392) FT /note="HMMPfam hit to PF01016, Ribosomal L27 protein" FT misc_feature complement(67252..67296) FT /note="ScanRegExp hit to PS00831, Ribosomal protein L27 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(67429..67740) FT /transl_table=11 FT /gene="rplU" FT /locus_tag="BP0749" FT /product="50S ribosomal protein L21" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L21 RplU or B3186 or Z4549 or Ecs4065 SW:RL21_ECOLI FT (P02422) (103 aa) fasta scores: E(): 4.8e-18, 47.573% id in FT 103 aa, and to Burkholderia pseudomallei 50S ribosomal FT protein L21 RplU TR:Q9FD29 (EMBL:AF292383) (103 aa) fasta FT scores: E(): 1.4e-29, 80.583% id in 103 aa" FT /db_xref="GOA:Q7VZX4" FT /db_xref="InterPro:IPR018258" FT /db_xref="UniProtKB/Swiss-Prot:Q7VZX4" FT /protein_id="CAE41055.1" FT /translation="MYAVIKTGGKQYRVATGEKLKVEQIPADIGQEITLDQVLSVGEGD FT QLKVGTPLVSGAVVKATVLAHGRHDKIKIFKMRRRKHYQKHQGHRQNYTEIRIEAITA" FT misc_feature complement(67453..67740) FT /note="HMMPfam hit to PF00829, Ribosomal prokaryotic L21 FT protein" FT misc_feature complement(67459..67527) FT /note="ScanRegExp hit to PS01169, Ribosomal protein L21 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 68165..69313 FT /transl_table=11 FT /locus_tag="BP0750" FT /product="conserved hypothetical protein" FT /note="Similar to Streptomyces coelicolor hypothetical 41.1 FT kDa protein Scf41.20C TR:Q9RJU9 (EMBL:AL117387) (390 aa) FT fasta scores: E(): 2.9e-72, 54.856% id in 381 aa, and to FT Agrobacterium tumefaciens Agr_c_4970p TR:AAK88456 FT (EMBL:AE008188) (386 aa) fasta scores: E(): 7e-73, 53.457% FT id in 376 aa" FT /db_xref="GOA:Q7VZX3" FT /db_xref="InterPro:IPR002529" FT /db_xref="UniProtKB/TrEMBL:Q7VZX3" FT /protein_id="CAE41056.1" FT /translation="MAVPHDDLPEDLERALLVGRVWQPAPVDGPCVVAVRGGRLYDLTA FT VTPTLADLLDRGDRVALARNAAGECLGPAADWLAGRAAGAMLAPCDLQPVKAAGATFAA FT SLVERIGAEQAGGDAGRAAAVRERIAGLIGTDLSQLRPGSPEAARLKAVLWARGMWSPY FT LEVGLGPDAEVFSKAPPMASVGYGSWIGLLPESEWNNPEPEIVLAVDARGQAVGATLGN FT DVNLHDVEARSALLQNRAKDNNGSCAMGPFVRLFDASYGLGDVRRADVRLRIEGQEDGF FT VLDATSHMREISRDPLELVRQTCGGHHQYPDGFMLFLGTMFSPTQDRAAAGRGFTHRPG FT DLVRIASPRLGALVNRVGLATAIAPWTFGVRALYANLRRRGL" FT CDS 69428..70393 FT /transl_table=11 FT /gene="ispB" FT /gene_synonym="cel" FT /locus_tag="BP0751" FT /product="octaprenyl-diphosphate synthase" FT /EC_number="2.5.1.-" FT /note="Similar to Escherichia coli octaprenyl-diphosphate FT synthase IspB or Cel or B3187 SW:ISPB_ECOLI (P19641) (323 FT aa) fasta scores: E(): 1.2e-63, 53.560% id in 323 aa, and FT to Vibrio cholerae octaprenyl-diphosphate synthase Vc0434 FT TR:Q9KUT1 (EMBL:AE004131) (348 aa) fasta scores: E(): FT 3.1e-63, 53.870% id in 323 aa" FT /db_xref="GOA:Q7VZX2" FT /db_xref="InterPro:IPR000092" FT /db_xref="UniProtKB/TrEMBL:Q7VZX2" FT /protein_id="CAE41057.1" FT /translation="MNLPELIAPIADDMKAVDTVIRDRLNSDVVLIRTIGDYIIGAGGK FT RMRPAMVLMVARALGYQGTHHQLLAAVVEFIHTATLLHDDVVDESDLRRGRDTANAVFG FT NAASVLVGDYLYSRSFEMMVEADSMRIMQILSQATTVIAEGEVLQLLNVHDPDVSQERY FT LQVVRYKTAKLFEAAAQVGAVLAGASPEQETAAAAYGRHVGTAFQLVDDVLDYSGDAHA FT LGKNVGDDLREGKPTLPLIRVMETGTPEQRELIREAIKTGQADFAAVAQAIQATDALAH FT ARQAAENEAELARQALSAFPVSLYQKSLLEFCAFAVNRDR" FT misc_feature 69518..70270 FT /note="HMMPfam hit to PF00348, Polyprenyl synthetase" FT misc_feature 69668..69712 FT /note="ScanRegExp hit to PS00723, Polyprenyl synthetases FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 70034..70072 FT /note="ScanRegExp hit to PS00444, Polyprenyl synthetases FT signature 2. Confirmed by InterPro eMOTIF pattern match." FT tRNA 70440..70516 FT /note="tRNA Pro anticodon CGG, Cove score 84.17" FT CDS complement(70662..71528) FT /transl_table=11 FT /locus_tag="BP0752" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Escherichia coli transcriptional FT activator protein LysR or B2839 SW:LYSR_ECOLI (P03030) (311 FT aa) fasta scores: E(): 4.6e-23, 34.507% id in 284 aa, and FT to Agrobacterium tumefaciens regulatory protein NocR FT SW:NOCR_AGRT5 (Q00678) (300 aa) fasta scores: E(): 5.3e-22, FT 33.333% id in 285 aa" FT /db_xref="GOA:Q7VZX1" FT /db_xref="HSSP:1IXC" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VZX1" FT /protein_id="CAE41058.1" FT /translation="MLNFRQVETFRAVMLTRSMTQAAKDLHTTQPNVSRVIAQLEARIG FT LRLFERVAGKLVPTREGEVFFRDVEMTFAGLRSLESSAATLRRRGTGHLRISAVPSPAL FT VTVPEAMQLFAERFPDVTVSMHVADSITVCQWTAAGYSDIGVASDIFSSPGIGHHVASE FT ALGVCIVPAGHRLAGMPRALAPADLAGERFLSLSPNDAMRKEIDKVFAAAICHMVGLGL FT GVSIANPDVADGFRSLDIAIKPFAPDIRFSTYLVYPSSSPLSLLAQTFCECYEISAGRK FT RARRQAG" FT misc_feature complement(71091..71483) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(71385..71477) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT misc_feature complement(71415..71480) FT /note="Predicted helix-turn-helix motif with score 1682 FT (+4.92 SD) at aa 4-25, sequence RSMTQAAKDLHTTQPNVSRVIA" FT CDS 71659..73707 FT /transl_table=11 FT /gene="hyuA" FT /locus_tag="BP0753" FT /product="putative hydantoin utilization protein A" FT /note="Similar to Pseudomonas sp hydantoin utilization FT protein A HyuA SW:HYUA_PSESN (Q01262) (690 aa) fasta FT scores: E(): 2.8e-78, 35.044% id in 682 aa, and to FT Rhizobium loti hydantoin utilization protein A Mlr7024 FT TR:Q987J7 (EMBL:AP003010) (692 aa) fasta scores: E(): FT 2.1e-118, 47.415% id in 677 aa" FT /db_xref="GOA:Q7VZX0" FT /db_xref="InterPro:IPR008040" FT /db_xref="UniProtKB/TrEMBL:Q7VZX0" FT /protein_id="CAE41059.1" FT /translation="MSLRIGVDIGGSFADFAVLDESTRTIQTLKVFSRPDAPGSEVLAG FT IEQLKARHGLDPAQVSYFTHGTTVGVNAVVQRRGLKLALITTRNFEDVLDIGRLKIPDM FT YHLMSKRPAPLISRDRVFGVDERLGADGSVVAPVDEASVLAAAEALREAGCEGVVVSLL FT HAYRNPAHERQVKAILQRALPGMFVSCSHEVWPIIREYERTLTATIGGYVQPRVSHYLE FT SLQGALRESGVPVDLKVTKSNGGVMSAEHGKANCVQMILSGTASGVIGAAYIADLCHIP FT NCMSLDIGGTTADIALIVDGKPQFATGEYIGDFQIHIPSVSVSSVGDGGGSIAWVDELG FT VLKVGHQSAGSTPGPVCYGKGGTQPTITDAFAVMGVIGSQQLGYNAVQVDVEAARRSIE FT PLAEKLGTDVLRTAEAIVNVSVSSMYAGVSRVISRFGIDPRVFSLMPFGGAGPMLACYL FT AKALKVQKLLVPTTPGVLSALGGLIADVKNDFVRTTYCDLNAATVGSLAQAASELEAQA FT RAWLVAEVGTDADAEIDISADMRYRGQSFEIDTPVERAWLEAGAIDSLSQAFHKEHERL FT YGHGDASAGVQVVAMRLVITSRTPKPELNHIAQGAGVPPRESTLRIWLEGQYRDVPLYR FT CEKLLAGQAFSGPAIVAQDDCTTCVLPGFDARVDTYGNLELTALALN" FT misc_feature 71668..73311 FT /note="HMMPfam hit to PF01968, Hydantoinase/oxoprolinase" FT CDS 73725..75722 FT /transl_table=11 FT /gene="hyuB" FT /locus_tag="BP0754" FT /product="hydantoin utilization protein B" FT /note="Similar to Pseudomonas sp hydantoin utilization FT protein B HyuB SW:HYUB_PSESN (Q01263) (592 aa) fasta FT scores: E(): 1.7e-52, 31.134% id in 591 aa, and to FT Rhizobium loti hydantoin utilization protein B Mlr7025 FT TR:Q987J6 (EMBL:AP003010) (661 aa) fasta scores: E(): FT 4.6e-142, 55.807% id in 663 aa. Also similar to BP0821 FT (58.133% identity in 664 aa overlap)" FT /db_xref="GOA:Q7VZW9" FT /db_xref="InterPro:IPR003692" FT /db_xref="UniProtKB/TrEMBL:Q7VZW9" FT /protein_id="CAE41060.1" FT /translation="MNFDKTVLQIFANYCVAAAESMAHTLMRTAHSAFVKETEDFSCTI FT MTPRGQTFASPKTLGATWYPGLDFSGAIDMIDGYEPGDICMTNDAYSGYVATHTPDIMM FT WKPVYYQGEMVCFVGGHIHNTDMGGAVPASLSRTLTEVHQEGIRFPPTKIVRRGVLNEE FT LMRLMELNVRSPDQNRGDLQAQTAMLMTGERRIVEIIERFGLQAFKEGMAAMLDYSEQQ FT ARAIVRAMPDGEYFFAEYANEDSLNGKPLRVAITLRIRGDELEFDFTGSDPQLTSSLNM FT PTGGKERHVLALVGLNYVLYSLNPEILLNAGMLRVARCILPEGSVVNPLAPAAVGMRSL FT TCKVVQYATMGVFSQVVPDRLPASPAGGMSIVNVKTTDRDGKTIIAAIEPVGGGAGGDP FT YSDGADASGAIVAFLRNTPVEINETEVPIRITRYGMVPDSGGPGRYRGGLGTCMEFQVY FT TPNSAVTARNRDRSRFASWGVLGGKAGTVSRFLRNPGTAHEEDLGVHDFIHCQPGDVIR FT LEGCGGGGYGSPWERDPARVLHDVRCGYVSVENARGQYGVVIEGGEVSRDATARLRAEL FT AGRDPAVAHYDHGAGRDAFEAVWTLARYERMTHHLAGVAPIWRHFLKIKIFDALEQRLG FT GNVADTRPEIVDEIFAQLLKACPQLQAASA" FT misc_feature 73731..75344 FT /note="HMMPfam hit to PF02538, Hydantoinase B/oxoprolinase" FT misc_feature 74223..74246 FT /note="ScanRegExp hit to PS00867, Carbamoyl-phosphate FT synthase subdomain signature 2." FT CDS 75757..77094 FT /transl_table=11 FT /locus_tag="BP0755" FT /product="putative amino acid deaminase" FT /note="Similar to Proteus vulgaris L-amino acid deaminase FT Lad TR:Q9LCB2 (EMBL:AB030003) (471 aa) fasta scores: E(): FT 9.2e-29, 31.628% id in 430 aa, and to Proteus mirabilis FT amino acid deaminase Aad TR:Q51890 (EMBL:U35383) (473 aa) FT fasta scores: E(): 7e-29, 28.638% id in 426 aa" FT /db_xref="GOA:Q7VZW8" FT /db_xref="InterPro:IPR013027" FT /db_xref="UniProtKB/TrEMBL:Q7VZW8" FT /protein_id="CAE41061.1" FT /translation="MQQLKQALLRIDTPHTPPAEVDVAIIGAGAAGVATAHELTRLGVR FT VAVIEKGWVAAEQSSRNWGWCRTLGRDIRELELARLSVDLWRSVQADTGVDAGFRETGV FT VFVTDDPSELRTWERWQQAAAARGVPARMLSAREANATHAWGKTPWIGGIRTERDGYAE FT PARAIPLLARHAMDNGAQVIQQCAVNELLVEGGRVAGVQTECGLVRASQVVVAGGVWSS FT LFCRKHKLPLPILQVHSSASRSRQFDTGGAAPARATHFSFRHREDGGLTLAKSGRGTMH FT VVPDLLRYGMKFRSLYRARKANVRLSIGRQFFAQCWDEFRYFHLDRPPYARHRVLDPGP FT DMALVRSAYEDAGAVFPGMGSDLIDQAWGGVIDNTPDGIPVISDVARMPGLYLCTGFSG FT HGFSSSLGAGRCLAQWIARGRSDLSLDAFSYARLVDGRRLQPSILY" FT misc_feature 76177..76200 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS join(77091..77255,78305..79210) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0756" FT /product="putative exported protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Comamonas testosteroni OrfJ FT protein TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: FT E(): 2.7e-31, 33.735% id in 332 aa, and to Rhizobium FT meliloti conserved hypothetical protein Sma1927 TR:AAK65716 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 1.1e-31, FT 35.629% id in 334 aa" FT /db_xref="PSEUDO:CAE41062.1" FT repeat_region 77255..78306 FT CDS 77357..78304 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0756A" FT /product="transposase (Pseudogene)" FT /note="Pseudogene. Transposase for IS481 element. The FT transposase lacks a stop codon, hence it is fused to the FT C-terminal portion of the disrupted CDS." FT misc_feature 77615..77680 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 77738..78271 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(78276..78306) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 79265..80746 FT /transl_table=11 FT /gene="gabD" FT /locus_tag="BP0757" FT /product="succinate-semialdehyde dehydrogenase [NADP+]" FT /EC_number="1.2.1.16" FT /note="Similar to Escherichia coli succinate-semialdehyde FT dehydrogenase [NADP+] GabD or B2661 SW:GABD_ECOLI (P25526) FT (482 aa) fasta scores: E(): 4.7e-99, 52.664% id in 488 aa, FT and to Agrobacterium radiobacter AttK TR:Q9WWD5 FT (EMBL:U59485) (484 aa) fasta scores: E(): 4.7e-106, 57.819% FT id in 486 aa" FT /db_xref="GOA:Q7VZW7" FT /db_xref="HSSP:1CW3" FT /db_xref="InterPro:IPR016162" FT /db_xref="UniProtKB/TrEMBL:Q7VZW7" FT /protein_id="CAE41064.1" FT /translation="MSLSVGNAALLPGRNLIGSEWREAALGARFAVADPATGKVIAHVP FT DSGARDAGAAVTAAHQAFADWRRTPAKVRAQIIKRWNALLHENAEDLARLISSEQGKPL FT AEARGEVSYAASYVEWFAEEATRADGDLIPSPAQGRRMFALREPVGVVAAITPWNFPAA FT MIARKIAPALAAGCTVVCKPAEDTPLTSLALTALAQQAGVPPGVLNIVTASRGRAAEVA FT DAWLDDPRVRKITFTGSTPVGKHLARRSADTLKRVSLELGGNAPFIVFDDADLDAAVEG FT LMVSKFRNGGQTCVCPNRIFVQAGVHDAFVRKLAARVEGLVVGPASDPASQIGPMINAR FT AVEKIEHHVADALERGARLAVGGKRIHSARCAGDHYYAPTVLTGVDETMACFREETFGP FT VAPITVFASEAEVVAAANATAFGLAAYFYSTDVRRIWRLADALETGIVGVNEGALAAEA FT APFGGVKDSGYGREGSRHGLAEYMQIKYVCQGQLD" FT misc_feature 79322..80737 FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family" FT misc_feature 79838..79903 FT /note="Predicted helix-turn-helix motif with score 975 FT (+2.51 SD) at aa 192-213, sequence LALTALAQQAGVPPGVLNIVTA" FT misc_feature 80039..80062 FT /note="ScanRegExp hit to PS00687, Aldehyde dehydrogenases FT glutamic acid active site." FT misc_feature 80123..80158 FT /note="ScanRegExp hit to PS00070, Aldehyde dehydrogenases FT cysteine active site." FT CDS complement(80762..81319) FT /transl_table=11 FT /gene="cyaC" FT /gene_synonym="HlyC" FT /locus_tag="BP0758" FT /product="cyclolysin-activating lysine-acyltransferase" FT /EC_number="2.3.1.-" FT /note="Identical to the previously sequenced Bordetella FT pertussis cyclolysin-activating lysine-acyltransferase CyaC FT SW:CYAC_BORPE (Q45359) (185 aa) fasta scores: E(): 2.1e-78, FT 99.459% id in 185 aa, and to Escherichia coli FT hemolysin-activating lysine-acyltransferase HlyC FT SW:HLYC_ECOLI (P06736) (170 aa) fasta scores: E(): 1.5e-24, FT 40.698% id in 172 aa" FT /db_xref="GOA:P0A3I5" FT /db_xref="InterPro:IPR003996" FT /db_xref="UniProtKB/Swiss-Prot:P0A3I5" FT /protein_id="CAE41065.1" FT /translation="MLPSAQAPSLLNPTDDFAALGNIAWLWMNSPMHRDWPVHLLARNT FT LAPIQLGQYILLRCNDVPVAYCSWALMDADTELSYVMAPSSLGGNAWNCGDRLWIIDWI FT APFSRDDNRALRRALAERHPDSVGRSLRVRRGGDTARVKEYRGRALDAAAARAQLDRYH FT AELIAGLRASNGGYAPRGRGTA" FT CDS 81798..86918 FT /transl_table=11 FT /gene="cyaA" FT /gene_synonym="cya" FT /locus_tag="BP0760" FT /product="bifunctional hemolysin-adenylate cyclase FT precursor" FT /EC_number="4.6.1.1" FT /note="Identical to the previously sequenced Bordetella FT pertussis bifunctional hemolysin-adenylate cyclase FT precursor Cya or CyaA SW:CYAA_BORPE (P15318) (1706 aa) FT fasta scores: E(): 0, 99.941% id in 1706 aa, and to FT Bordetella parapertussis bifunctional hemolysin-adenylate FT cyclase precursor CyaA TR:Q9L469 (EMBL:AJ249835) (1706 aa) FT fasta scores: E(): 0, 97.714% id in 1706 aa" FT /db_xref="GOA:P15318" FT /db_xref="InterPro:IPR018504" FT /db_xref="PDB:2COL" FT /db_xref="UniProtKB/Swiss-Prot:P15318" FT /protein_id="CAE41066.1" FT /translation="MQQSHQAGYANAADRESGIPAAVLDGIKAVAKEKNATLMFRLVNP FT HSTSLIAEGVATKGLGVHAKSSDWGLQAGYIPVNPNLSKLFGRAPEVIARADNDVNSSL FT AHGHTAVDLTLSKERLDYLRQAGLVTGMADGVVASNHAGYEQFEFRVKETSDGRYAVQY FT RRKGGDDFEAVKVIGNAAGIPLTADIDMFAIMPHLSNFRDSARSSVTSGDSVTDYLART FT RRAASEATGGLDRERIDLLWKIARAGARSAVGTEARRQFRYDGDMNIGVITDFELEVRN FT ALNRRAHAVGAQDVVQHGTEQNNPFPEADEKIFVVSATGESQMLTRGQLKEYIGQQRGE FT GYVFYENRAYGVAGKSLFDDGLGAAPGVPSGRSKFSPDVLETVPASPGLRRPSLGAVER FT QDSGYDSLDGVGSRSFSLGEVSDMAAVEAAELEMTRQVLHAGARQDDAEPGVSGASAHW FT GQRALQGAQAVAAAQRLVHAIALMTQFGRAGSTNTPQEAASLSAAVFGLGEASSAVAET FT VSGFFRGSSRWAGGFGVAGGAMALGGGIAAAVGAGMSLTDDAPAGQKAAAGAEIALQLT FT GGTVELASSIALALAAARGVTSGLQVAGASAGAAAGALAAALSPMEIYGLVQQSHYADQ FT LDKLAQESSAYGYEGDALLAQLYRDKTAAEGAVAGVSAVLSTVGAAVSIAAAASVVGAP FT VAVVTSLLTGALNGILRGVQQPIIEKLANDYARKIDELGGPQAYFEKNLQARHEQLANS FT DGLRKMLADLQAGWNASSVIGVQTTEISKSALELAAITGNADNLKSVDVFVDRFVQGER FT VAGQPVVLDVAAGGIDIASRKGERPALTFITPLAAPGEEQRRRTKTGKSEFTTFVEIVG FT KQDRWRIRDGAADTTIDLAKVVSQLVDANGVLKHSIKLDVIGGDGDDVVLANASRIHYD FT GGAGTNTVSYAALGRQDSITVSADGERFNVRKQLNNANVYREGVATQTTAYGKRTENVQ FT YRHVELARVGQLVEVDTLEHVQHIIGGAGNDSITGNAHDNFLAGGSGDDRLDGGAGNDT FT LVGGEGQNTVIGGAGDDVFLQDLGVWSNQLDGGAGVDTVKYNVHQPSEERLERMGDTGI FT HADLQKGTVEKWPALNLFSVDHVKNIENLHGSRLNDRIAGDDQDNELWGHDGNDTIRGR FT GGDDILRGGLGLDTLYGEDGNDIFLQDDETVSDDIDGGAGLDTVDYSAMIHPGRIVAPH FT EYGFGIEADLSREWVRKASALGVDYYDNVRNVENVIGTSMKDVLIGDAQANTLMGQGGD FT DTVRGGDGDDLLFGGDGNDMLYGDAGNDTLYGGLGDDTLEGGAGNDWFGQTQAREHDVL FT RGGDGVDTVDYSQTGAHAGIAAGRIGLGILADLGAGRVDKLGEAGSSAYDTVSGIENVV FT GTELADRITGDAQANVLRGAGGADVLAGGEGDDVLLGGDGDDQLSGDAGRDRLYGEAGD FT DWFFQDAANAGNLLDGGDGRDTVDFSGPGRGLDAGAKGVFLSLGKGFASLMDEPETSNV FT LRNIENAVGSARDDVLIGDAGANVLNGLAGNDVLSGGAGDDVLLGDEGSDLLSGDAGND FT DLFGGQGDDTYLFGVGYGHDTIYESGGGHDTIRINAGADQLWFARQGNDLEIRILGTDD FT ALTVHDWYRDADHRVEIIHAANQAVDQAGIEKLVEAMAQYPDPGAAAAAPPAARVPDTL FT MQSLAVNWR" FT misc_feature 82842..82865 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 82887..84659 FT /note="HMMPfam hit to PF02382, RTX N-terminal domain" FT misc_feature 84840..85004 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding protein" FT misc_feature 85188..85373 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding protein" FT misc_feature 85278..85334 FT /note="ScanRegExp hit to PS00330, Hemolysin-type FT calcium-binding region signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 85560..85793 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding protein" FT misc_feature 85704..85760 FT /note="ScanRegExp hit to PS00330, Hemolysin-type FT calcium-binding region signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 85983..86195 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding protein" FT misc_feature 86073..86129 FT /note="ScanRegExp hit to PS00330, Hemolysin-type FT calcium-binding region signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 86361..86573 FT /note="HMMPfam hit to PF00353, Hemolysin-type FT calcium-binding protein" FT misc_feature 86505..86561 FT /note="ScanRegExp hit to PS00330, Hemolysin-type FT calcium-binding region signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 86996..89134 FT /transl_table=11 FT /gene="cyaB" FT /locus_tag="BP0761" FT /product="cyclolysin secretion ATP-binding protein" FT /note="Identical to the previously sequenced Bordetella FT pertussis cyclolysin secretion ATP-binding protein CyaB FT SW:CYAB_BORPE (P18770) (712 aa) fasta scores: E(): 0, FT 97.199% id in 714 aa, and to Escherichia coli hemolysin FT secretion ATP-binding protein, chromosomal HlyB FT SW:HLY2_ECOLI (P10089) (707 aa) fasta scores: E(): FT 1.6e-133, 52.841% id in 704 aa" FT /db_xref="GOA:P18770" FT /db_xref="HSSP:1MT0" FT /db_xref="InterPro:IPR005074" FT /db_xref="UniProtKB/Swiss-Prot:P18770" FT /protein_id="CAE41067.1" FT /translation="MTSPVAQCASVPDSGLLCLVMLARYHGLAADPEQLRHEFAEQAFC FT SETIQLAARRVGLKVRRHRPAPARLPRAPLPAIALDRQGGYFVLARFEPGADQAVLIQR FT PGQAPARLGQAEFEALWAGELLLCACAASPTQALARFDFSWFIPALVKHRHLIGEVLLI FT SLVLQFIALLTPLFFQVVMDKVLVNNAMETLNVIAVGFLAAILFEALLTGIRTYLFAHT FT SSKLDVELGARLYAHLLRLPLAYFQARRVGDSVARVRELEHIRAFLTGNAVTVLLDVVF FT SVVFIAVMFFYSVKLTLVVLAALPCYFLLSLVLTPVLRRRLDVKFNRGAENQAFLVETV FT SGIDTVKSLAVEPQWQRNWDRQLAGYVAAGLSVANVAMLANTGVTLISRLVALGVLWVG FT ATEVVAQRMTVGELVAFNMLSGHVTQPVIRLAQLWNDFQQTGVSMQRLGDILNCRTEVA FT GDKAQLPALRGSIELDRVSFRYRPDAADALRNVSLRIAPGEVVGVVGRSGSGKSTLTRL FT IQRMFVADRGRVLIDGHDIGIVDSASLRRQLGVVLQESTLFNRSVRDNIALTRPGASMH FT EVVAAARLAGAHEFICQLPEGYDTMLGENGVGLSGGQRQRIGIARALIHRPRVLILDEA FT TSALDYESEHIIQRNMRDICDGRTVIIIAHRLSAVRCADRIVVMEGGEVAECGSHETLL FT AAGGLYARLQALQAGEAG" FT misc_feature 87455..88276 FT /note="HMMPfam hit to PF00664, ABC transporter FT transmembrane region." FT misc_feature join(87473..87541,87584..87652,87800..87868,87881..87949, FT 88088..88156) FT /note="5 probable transmembrane helices predicted for FT BP0761 by TMHMM2.0 at aa 160-182, 197-219, 269-291, 296-318 FT and 365-387" FT misc_feature 88487..89041 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 88508..88531 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 88820..88864 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 89131..90453 FT /transl_table=11 FT /gene="cyaD" FT /locus_tag="BP0762" FT /product="cyclolysin secretion protein" FT /note="Identical to the previously sequenced Bordetella FT pertussis CyaD protein cyaD SW:CYAD_BORPE (P11091) (440 aa) FT fasta scores: E(): 6.9e-151, 99.318% id in 440 aa" FT /db_xref="GOA:P11091" FT /db_xref="InterPro:IPR010129" FT /db_xref="UniProtKB/Swiss-Prot:P11091" FT /protein_id="CAE41068.1" FT /translation="MRRALRELAARHGRVLAASWRQRHRRPAGWFDPVETEFLPSALSL FT QERPISPTARWLARILMALAAGALVWSVVGKTEIVVHAAGKVVPVGQSKIIAASETGRV FT ARVLVADNSRVAAGDVLLRLDAGVTEAEERKWRVQAAQARQDEARSRAMIRALDTGRAP FT VLAELPADPGMMAAQSYLDSQYADYQAQLRSIEAAIATYRRELGLVTQIAHAHRGLRRD FT GDVSQQAYLEKEQARMTLEGRLRQSEAQRAALQTQTRRQAFETLVLARKLAAQAEQEIA FT RTSAQRSRLVLTAPVDGVVQQLVALTEGTAVAATQPLMMVVPSGAGIQVQAQLDSKDIG FT FVRAGAPATVKVGAYDYTKYGTLEGKVLYVSPDTVVDDRQQHSYRVTIALAHPALEVDG FT KPRLLKEGMAVQADIRTGSRRLIEYLLSPVARHAGESLGER" FT misc_feature 89404..90360 FT /note="HMMPfam hit to PF00529, HlyD family secretion FT protein" FT misc_feature 90340..90408 FT /note="ScanRegExp hit to PS00543, HlyD family secretion FT proteins signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 90455..91879 FT /transl_table=11 FT /gene="cyaE" FT /locus_tag="BP0763" FT /product="cyclolysin secretion protein" FT /note="Identical to the previously sequenced Bordetella FT pertussis protein CyaE precursor CyaE SW:CYAE_BORPE FT (P11092) (474 aa) fasta scores: E(): 2.3e-165, 100.000% id FT in 474 aa" FT /db_xref="GOA:P11092" FT /db_xref="InterPro:IPR003423" FT /db_xref="UniProtKB/Swiss-Prot:P11092" FT /protein_id="CAE41069.1" FT /translation="MAAVQVRRRGRALALALWAGFALSVGGGVRARDGLATPPAFEGQA FT APAVSWPCPPPADRLDDLALLEAIDLALCHSPALRQGWARIKARSAEVGLARAPYYPSV FT ALSAGRSAQRRSTGLGEDGVRNNVMAVTLAWRLFDSGARSAALRAAQAQLDEAAQAYGA FT VLQDKLAEVVGAYYEAATARQALHTAVEDTEIARRSASIAARRARAGLDSHGDVLHAQA FT ALERARLAQAQAEGAQARALAGLAQVLGVDPATPIVLAPGPLAPQRIEDRELAQWLRDA FT RQRHPAIKAAQAGLAAATAQVDVARATDMPTVDLSLGHYRNSSENVSVFAGSSRSVSAS FT LNLRIPLFDGFARRHRIQGARAEVQRQEALLDQARLATGAAVARAYADLRAARASHEAS FT LRWLKAARAAYESDLRRYEAGVGGVAELLRAQSDWLSARQRHVLYAAQLRTRALALLAA FT AGELGRSTIDGDPPKE" FT misc_feature 90455..90547 FT /note="Signal peptide predicted for BP0763 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.965) with cleavage site FT probability 0.450 between residues 31 and 32" FT misc_feature 90488..90547 FT /note="1 probable transmembrane helix predicted for BP0763 FT by TMHMM2.0 at aa 12-31" FT misc_feature 90647..91237 FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein" FT misc_feature 91274..91867 FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein" FT CDS 91970..92878 FT /transl_table=11 FT /gene="cyaX" FT /locus_tag="BP0764" FT /product="probable LysR-family transcriptional regulator" FT /note="Identical to the previously sequenced Bordetella FT pertussis unknown Orf CyaX TR:Q45360 (EMBL:X14199) (285 aa) FT fasta scores: E(): 1.6e-99, 93.411% id in 258 aa, and FT similar to Escherichia coli transcriptional activator FT protein IlvY or B3773 SW:ILVY_ECOLI (P05827) (297 aa) fasta FT scores: E(): 1.3e-09, 26.733% id in 303 aa" FT /db_xref="GOA:Q7VZW6" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VZW6" FT /protein_id="CAE41070.1" FT /translation="MMVMDLRWFQDFLTLAECGQFTTAAELRHVSQSAFSRRIQSLETW FT VGTPLIDRGCFPTRLTAAGEQFRSAAAEIVRKVIDARGEAGATGHDSMVLRVAMPHCLA FT TSRFPAWCARWQQVGGAASLRLHVGNVHDSVEWLAAGVVDLLVCFRHAVEDIQLDAQSY FT MRAGVEADVLRLYRPAGMALDEAELACEAPQARYPYVSYAQGAYFRRLIELSCGPLLQR FT AVLQRVCETDFVDGARDLVRAGVGLAWLPDSSARAAVEHGEIVAVADRRCAIPMEICMY FT ARRHGPAQEAVERVFDQFGRG" FT misc_feature 91985..92410 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 92024..92089 FT /note="Predicted helix-turn-helix motif with score 1182 FT (+3.21 SD) at aa 19-40, sequence GQFTTAAELRHVSQSAFSRRIQ" FT misc_feature 92027..92119 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS 92943..93857 FT /transl_table=11 FT /locus_tag="BP0765" FT /product="probable extracellular solute-binding protein" FT /note="Similar to Escherichia coli amino-acid ABC FT transporter binding protein YbeJ precursor YbeJ or B0655 FT SW:YBEJ_ECOLI (P37902) (302 aa) fasta scores: E(): 2.3e-50, FT 47.038% id in 287 aa, and to Pseudomonas aeruginosa FT probable binding protein component of ABC transporter FT Pa1342 TR:Q9I402 (EMBL:AE004563) (302 aa) fasta scores: FT E(): 2.5e-52, 47.797% id in 295 aa. Also similar to BP0057, FT 51.325% identity (52.013% ungapped) in 302 aa overlap." FT /db_xref="GOA:Q7VZW5" FT /db_xref="InterPro:IPR001638" FT /db_xref="UniProtKB/TrEMBL:Q7VZW5" FT /protein_id="CAE41071.1" FT /translation="MKRLLNALTAALAIGAAAAGQAHAADLDGTLKKISDTGVITIGHR FT ETSIPFSYYDANQKPVGYSIDICTRIVDAVKTRIKRDDIQVKYLPVTSATRIPLMGNGT FT IDLECASTSNTLDCQKQVAFSVTTFVTGNRFISLKSANLKTIDDLKGKTVASTSGTANI FT RQANEINEARSLGMKVVPVKEHAEGFLMVETGRAAAFIMDDILLYGLAANAKEPDRYQV FT SGDSLSIEPYAIMLRRDDPQFKALVDDTIKSLYASGDFEALYKRWYQSPLPPKGINLNV FT AMSEVLKRVVATPTDSGDPVAYK" FT misc_feature 92943..93014 FT /note="Signal peptide predicted for BP0765 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 24 and 25" FT misc_feature 92991..93023 FT /note="ScanRegExp hit to PS00626, Regulator of chromosome FT condensation (RCC1) signature 2." FT misc_feature 93060..93752 FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3" FT CDS join(93965..94687,94687..94698) FT /pseudo FT /transl_table=11 FT /gene="gltJ" FT /locus_tag="BP0766" FT /product="glutamate/aspartate transport system permease FT protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 241. The frameshift occurs within FT a polymeric tract of (G)5. The sequence has been checked FT and believed to be correct. Similar to Escherichia coli FT glutamate/aspartate transport system permease protein GltJ FT or B0654 SW:GLTJ_ECOLI (P41074) (246 aa) fasta scores: E(): FT 1.7e-37, 44.635% id in 233 aa, and to Pseudomonas FT aeruginosa probable permease of ABC transporter Pa1341 FT TR:Q9I403 (EMBL:AE004563) (248 aa) fasta scores: E(): FT 1.4e-39, 47.639% id in 233 aa. Also similar to BP0056, FT 57.759% identity (58.515% ungapped) in 232 aa overlap." FT /db_xref="PSEUDO:CAE41072.1" FT misc_feature 94328..94549 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature 94331..94417 FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign." FT variation 94684..94688 FT /note="(G)5 in pertussis; (G)6 in parapertussis" FT CDS 94695..95378 FT /transl_table=11 FT /gene="gltK" FT /locus_tag="BP0767" FT /product="glutamate/aspartate transport system permease FT protein" FT /note="Similar to Escherichia coli glutamate/aspartate FT transport system permease protein GltK or B0653 or Z0803 or FT Ecs0692 SW:GLTK_ECOLI (P41075) (224 aa) fasta scores: E(): FT 6.2e-33, 48.214% id in 224 aa, and to Pseudomonas FT aeruginosa probable permease of ABC transporter Pa1340 FT TR:Q9I404 (EMBL:AE004563) (222 aa) fasta scores: E(): FT 3e-32, 45.701% id in 221 aa. Also similar to BP0055, FT 56.696% identity (56.696% ungapped) in 224 aa overlap." FT /db_xref="GOA:Q7VZW4" FT /db_xref="InterPro:IPR010065" FT /db_xref="UniProtKB/TrEMBL:Q7VZW4" FT /protein_id="CAE41073.1" FT /translation="MSSFDYQAIIDALPYLFLTGLRFSLLLTLSSAAGGVVLGALLAIA FT RLYGRRWVAWPAAIYVNLFRSLPLVLVIFLIYFILPYLLQWITQAERPIVLGATGSAFV FT TFILFEAAYFSEIIRAGIGSVGPGQYAAGSALGLTHGQVLRKVILPQAVRNMLPVLLTQ FT VIVIFQETALVYVLSLPDFLGAATKIAQRDNRLVEMYVLVAVVFFVLSFTASRGVRALR FT ARLGA" FT misc_feature join(94761..94829,94890..94958,94971..95039,95163..95231, FT 95289..95348) FT /note="5 probable transmembrane helices predicted for FT BP0767 by TMHMM2.0 at aa 23-45, 66-88, 93-115, 157-179 and FT 199-218" FT misc_feature 95055..95288 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT CDS 95395..96138 FT /transl_table=11 FT /gene="gltL" FT /locus_tag="BP0768" FT /product="glutamate/aspartate transport ATP-binding FT protein" FT /note="Similar to Escherichia coli glutamate/aspartate FT transport ATP-binding protein GltL or B0652 or Z0802 or FT Ecs0691 SW:GLTL_ECOLI (P41076) (241 aa) fasta scores: E(): FT 5.2e-51, 65.000% id in 240 aa, and to Pseudomonas FT aeruginosa probable ATP-binding component of ABC FT transporter Pa1339 TR:Q9I405 (EMBL:AE004563) (244 aa) fasta FT scores: E(): 5.5e-57, 69.262% id in 244 aa. Similar to FT several B. pertussis CDSs: BP1181, P3828, BP1534, BP1855, FT BP1575, BP1362, P0054, and BP1510." FT /db_xref="GOA:Q7VZW3" FT /db_xref="HSSP:1B0U" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VZW3" FT /protein_id="CAE41074.1" FT /translation="MELLSMIEIERLGKCYGDLPVLKDCSLAVARGEVVVVCGPSGSGK FT STLIKCVNRLEPFESGRIVVDGTDVGAPGTDLPALRARVGMVFQHFELFPHLSVLENVC FT LGQMSVLGRSRAQARAKADALLERVGVAAHRDKHPGQLSGGQQQRVAIARALAMDPVVM FT LFDEPTSALDPEMIGEVLDVMTGLARDGMTMMVVTHEMGFARRVADRIVFMEAGEIIDD FT VASAEFFGSAASPRSREFLSRIISH" FT misc_feature 95488..96045 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 95509..95532 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 95818..95862 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 96168..97028 FT /transl_table=11 FT /locus_tag="BP0769" FT /product="probable aminotransferase" FT /note="Similar to Staphylococcus aureus D-alanine FT aminotransferase TR:Q9KWZ6 (EMBL:Y14816) (282 aa) fasta FT scores: E(): 4.4e-32, 39.130% id in 276 aa, and to Brucella FT suis hypothetical 32.0 kDa protein TR:CAC67779 FT (EMBL:AJ305234) (289 aa) fasta scores: E(): 1.5e-47, FT 48.387% id in 279 aa" FT /db_xref="GOA:Q7VZW2" FT /db_xref="HSSP:1DAA" FT /db_xref="InterPro:IPR001544" FT /db_xref="UniProtKB/TrEMBL:Q7VZW2" FT /protein_id="CAE41075.1" FT /translation="MSSLFYINGSFVPAEQARVPAMDRGFLFGDGVYEVMAVIDGMLLE FT FERHAARLARSLGEIGIANPLPRERLLAVCRELVSRAGLREGSVYVQVTRGADARRDFA FT FPSGVEPTVMLFTSEKDLRVNPLAQSGVQVATVPDLRWQRRDIKSVSLLAQVLAKQAAQ FT ARGAFEAVMVDAQGVVTEGSSSSVLLVNAAGEIVVRPLSQDILPGCTRAAVLELARERD FT MAMVERPFTLDECRQAREVILTSALQFVLPVIAVDGEPVADGRPGPVCAALRELYLRHT FT LATAL" FT misc_feature 96189..97001 FT /note="HMMPfam hit to PF01063, Aminotransferase class IV" FT CDS complement(97036..97602) FT /transl_table=11 FT /locus_tag="BP0770" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Smb20087 TR:CAC48487 (EMBL:AL603642) (201 aa) fasta FT scores: E(): 0.00043, 27.807% id in 187 aa, and to FT Rhizobium loti Mll2445 protein Mll2445 TR:Q98ID9 FT (EMBL:AP002999) (200 aa) fasta scores: E(): 9e-06, 28.495% FT id in 186 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VZW1" FT /protein_id="CAE41076.1" FT /translation="MSLIVAARFDTFPDVENAAQRLFSEGFTKQDVHVFYVNSAGEHSR FT YAYGGDRRSDPDSGRADMGAILGAALFGLAFAIAGGFIVAGLNESTIAMLAAAGVGAYI FT GSLFGALWVTGHLARKRGEAAPVDHPEVRPAGLLLALHTDPTRETLACQVLRAANGHDV FT EHAEGVWRDNRWQDFDPLKPPQREP" FT misc_feature complement(join(97264..97329,97342..97407)) FT /note="2 probable transmembrane helices predicted for FT BP0770 by TMHMM2.0 at aa 65-87 and 91-113" FT CDS complement(97691..98647) FT /transl_table=11 FT /locus_tag="BP0771" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 3e-27, 34.727% id in 311 aa, and to Alcaligenes eutrophus FT hypothetical 35.6 kDa protein in gbd 5'region precursor FT SW:YGB7_ALCEU (Q44018) (327 aa) fasta scores: E(): 3.9e-30, FT 37.294% id in 303 aa" FT /db_xref="GOA:Q7VZW0" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VZW0" FT /protein_id="CAE41077.1" FT /translation="MKSINKYLAATLASLGLAAGAAATDFPKNEVRLVVNYGAGGNTDV FT ASRALAKGMEKPLGKPVIVENKPGALGTIGPGYVARQAPDGYTVGVVTYSTQAIMPHLM FT KLPYTMDDFDFVAGVGRYRYGITVRADSPYKTLQDLVEAAKKPNGMFFGAPSSPNNLAL FT LELGRLTGGKFEQVSYKSGSETVTALLGGQVDVIVQNPSDVLPHIRDGKLRMIASASPM FT RWPELPEVPTIQESGWPVQIDSWIGLATPRGAPADVLAKLQQAALAAVADPVTRDSFEK FT LGVDPASLKGSEYAELLKQGHEEMGRMIRDANLPRIN" FT misc_feature complement(98579..98647) FT /note="Signal peptide predicted for BP0771 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.868 between residues 23 and 24" FT CDS complement(98692..99444) FT /transl_table=11 FT /locus_tag="BP0772" FT /product="putative acetoacetyl-CoA reductase" FT /EC_number="1.1.1.36" FT /note="Similar to Zoogloea ramigera acetoacetyl-CoA FT reductase PhbB SW:PHBB_ZOORA (P23238) (241 aa) fasta FT scores: E(): 2.3e-25, 38.710% id in 248 aa, and to FT Azospirillum brasilense nodulation protein G NodG FT SW:NODG_AZOBR (P17611) (246 aa) fasta scores: E(): 8.7e-26, FT 35.458% id in 251 aa" FT /db_xref="GOA:Q7VZV9" FT /db_xref="HSSP:1FJH" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VZV9" FT /protein_id="CAE41078.1" FT /translation="MSEPRIAVVTGAGRGIGLASARALLAAGNHVVTIDRGAIDTQALF FT GAQHDRVTAASADVQDLPALQALKARVEAELGPVSILVNNAGVSPKRPDGRSSGILEVS FT EEEWAQVLGINLTCVMRLCQLFLPAMRDQGYGRIVNVASLAGRARSIVAGPSYMASKAG FT VIGLTRAIASEMGPYGITANCVAPGRILTEMAQQAGPEVNQRYAEQIPVRRLGTPEEVG FT TSIAFLCGPDAGFVNGAIIDINGGFYMP" FT misc_feature complement(98716..98808) FT /note="HMMPfam hit to PF00678," FT misc_feature complement(98866..99432) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT misc_feature complement(99073..99138) FT /note="Predicted helix-turn-helix motif with score 996 FT (+2.58 SD) at aa 103-124, sequence VSEEEWAQVLGINLTCVMRLCQ" FT CDS complement(99441..101186) FT /transl_table=11 FT /locus_tag="BP0773" FT /product="putative acetolactate synthase large subunit" FT /EC_number="2.2.1.6" FT /note="Similar to Methanococcus aeolicus acetohydroxyacid FT synthase large subunit IlvB TR:O08353 (EMBL:U35458) (599 FT aa) fasta scores: E(): 2.2e-48, 32.105% id in 570 aa, and FT to Methanococcus maripaludis acetohydroxyacid synthase FT large subunit IlvB TR:Q9Y8J0 (EMBL:AF118061) (587 aa) fasta FT scores: E(): 3.6e-46, 32.737% id in 559 aa" FT /db_xref="GOA:Q7VZV8" FT /db_xref="HSSP:1OZF" FT /db_xref="InterPro:IPR012000" FT /db_xref="UniProtKB/TrEMBL:Q7VZV8" FT /protein_id="CAE41079.1" FT /translation="MSTLPKPLSAPGFTLDGTVAHAIVRALARHGVDTLFGQSLPSLLH FT LAAEQAGMRQVAYRTENAGGYMADAYARVSGKPAIVTAQNGPAATLLVAPLAEAMKVSV FT PVIALVQDVNRDQTDRNAFQELDHIALFQPVTKWVRRVTEASRIEDYVDQAFAAACSGR FT PGPVALLLPADLLAAAAPAPALPRNNSLGHFPLDRSVAAPQAIARAASLLAQAQRPVVV FT AGGGVHISDASAAMAALQETAHLPVATTVMGKGAVDERHPLSIGVVGSNMGPNGPTRFQ FT RRLIAEADVVLLVGNRTNQNGTDSWQLYPKNAQYIHIDVDGLEVGRNYEALRLVGDARL FT TLEALTAALAGQDLAARRQARAGVEQAIALGHEKHLEDSAAVRLSDASPIRPERIMHEL FT QQQLDEQSIVVADASYSSIWITHFLTALRPGMRFLTPRGLAGLGWGFPMAMGAKLANPA FT AEVYALVGDGGFGHVWSELETAARMGVKVTLIVINNGILGFQKHAENVKFGAHTSAVAF FT APVNHTAIARACGCTGIRVEDPAQLADALAQARAASGSALIEVICDENAFPPITFFTPD FT AGVQA" FT misc_feature complement(99507..101108) FT /note="HMMPfam hit to PF00205, Thiamine pyrophosphate FT enzyme, central domain" FT misc_feature complement(99780..99839) FT /note="ScanRegExp hit to PS00187, Thiamine pyrophosphate FT enzymes signature." FT CDS 101271..102005 FT /transl_table=11 FT /locus_tag="BP0774" FT /product="probable GntR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa5525 TR:Q9HT48 (EMBL:AE004965) FT (246 aa) fasta scores: E(): 8.4e-20, 37.069% id in 232 aa, FT and to Rhizobium loti probable transcriptional regulator FT Mlr1038 TR:Q98LF9 (EMBL:AP002996) (226 aa) fasta scores: FT E(): 1e-19, 34.483% id in 203 aa" FT /db_xref="GOA:Q7VZV7" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VZV7" FT /protein_id="CAE41080.1" FT /translation="MATLANRPLFAPIPPSMNMPLAPMARENIAAVIYRQLKQLLMMGE FT LKPGEILTLRMLTERLGVSQTPVREALLQLVSERALAMSRGKSVSVPAPTREKLQELRD FT IRLTLEVLATERATPRISDAEIKTLERLHREMVRYKNSEQREGVLKTNYEFHFTLYNAS FT GMPDLVAIIEGLWAQTGPSLTYLYQKPFAHLYDAHPHLPLIEALRRHDVEAAVAAIRRD FT VAGYGAALMERLPAEAGQPAGG" FT misc_feature 101367..101543 FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT misc_feature 101424..101489 FT /note="Predicted helix-turn-helix motif with score 1003 FT (+2.60 SD) at aa 34-55, sequence LTLRMLTERLGVSQTPVREALL" FT CDS 102322..103344 FT /transl_table=11 FT /locus_tag="BP0775" FT /product="hypothetical protein" FT /note="Similar to the C-terminal region of Serratia FT marcescens extracellular serine protease precursor FT SW:PRTS_SERMA (P09489) (1045 aa) fasta scores: E(): FT 1.2e-19, 30.435% id in 276 aa, and to Rhizobium loti serine FT proteinase Mlr1935 TR:Q98JH8 (EMBL:AP002998) (1213 aa) FT fasta scores: E(): 1.9e-29, 35.275% id in 309 aa. Also FT similar to the C-terminal regions of BP1661 (43.344% FT identity in 323 aa overlap) and BP1110 (42.722% identity in FT 316 aa overlap)" FT /db_xref="InterPro:IPR005546" FT /db_xref="UniProtKB/TrEMBL:Q7VZV6" FT /protein_id="CAE41081.1" FT /translation="MSLHPVVCLDRSRRGPGDFPLLSMSAVAMRRGVSALLGVAGTLAL FT AAPAWAQARQEAASAAHPTWMAAAGNWQVLEGGPGVARVKQRTTGVYAGSEHALGAGLR FT LGGVLGLTRSTARFDDLYAKGHVNSYSLALYGARTVAAGAGDFNAVAGAAYTWHDMDTR FT RHFHWAGTSQTLTADTHGSTFQAFGELGYRWRASARVQIEPFAALAWRDVRTRAFVESG FT GWAAISAGPSRLTQTTTTLGVRGEAGYMLGPAPGKLRLTLGWRRAFGDVDPQATLVLDG FT GNALAATGAPIARDAALAGLGAELALSRSAAIGLAYIGQYSGGNREHTGSLSLRWLFGA FT " FT CDS complement(103360..104070) FT /transl_table=11 FT /locus_tag="BP0776" FT /product="probable GntR-family transcriptional regulator" FT /note="Similar to Chelatobacter heintzii nta operon FT transcriptional regulator NtaR or NmoR SW:NTRA_CHEHE FT (P54988) (210 aa) fasta scores: E(): 5.8e-21, 40.476% id in FT 210 aa, and to EDTA-degrading bacterium BNC1 EmoR TR:Q9F9T1 FT (EMBL:AF176664) (207 aa) fasta scores: E(): 7.5e-20, FT 37.255% id in 204 aa" FT /db_xref="GOA:Q7VZV5" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VZV5" FT /protein_id="CAE41082.1" FT /translation="MYKTTTEPAEKGRRAFSQVLEKLREMVISYEIKPGERLNEVALAE FT RLGVSRTPVREALHFLARDGFLAEAGRGYVRRPLNLKEMIDLYETREVLEVACLQLAAG FT RATPQRLDALEAFLAESRAKSPDLPVTELVSLDETFHHMLAEMSGNHELQRILHNVNER FT IRFIRWINMERIGRDKTQAEHAAILAALRAGDIATAQQNLRSHISKRTEQIKECIAQGL FT AHIYLDDDETSPGA" FT misc_feature complement(103876..104016) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT misc_feature complement(103888..103962) FT /note="ScanRegExp hit to PS00043, Bacterial regulatory FT proteins, gntR family signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature complement(103894..103959) FT /note="Predicted helix-turn-helix motif with score 1086 FT (+2.89 SD) at aa 42-63, sequence LNEVALAERLGVSRTPVREALH" FT CDS complement(104227..105234) FT /transl_table=11 FT /locus_tag="BP0777" FT /product="probable Zinc-binding dehydrogenase" FT /note="Similar to Rhodopseudomonas palustris putative FT NADPH:quinone oxidoreductase BadC TR:O07459 (EMBL:U75363) FT (339 aa) fasta scores: E(): 5.9e-22, 34.393% id in 346 aa, FT and to Halobacterium sp alcohol dehydrogenase Adh4 or FT Vng1821G TR:Q9HP38 (EMBL:AE005083) (347 aa) fasta scores: FT E(): 5.3e-29, 43.875% id in 351 aa" FT /db_xref="GOA:Q7U364" FT /db_xref="HSSP:1IYZ" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7U364" FT /protein_id="CAE41083.1" FT /translation="MKAVVIHGHGGPEVLQYDTAFPDPKAGEGDVILRVKATSINYHDV FT FTRRGMPGIKLDFPVIMGLDVAGEIVEVGPGVQGWKAGDRVLVDPINRAEGGLMGETVH FT GGLAELCKAREHQLIRIPDGVSYEQAAALPVAFGTAYRMMHTIGQVQAGEKVLVLGASG FT GVGVGCVMLAKIAGAQVIACASSEAKMQRLRELGADHVINYADTDFAKAIYELYGKPHR FT RKFDGGVDVAVNFTGGDTWVKSMRCLRRGGRLLTCGATAGYDPQTDLRFIWTFELNIRG FT SNGWMREDLDALLGLVQSGKMQVPIDRVLSLQDAGEALRLIEDREVMGKVVVTP" FT misc_feature complement(104230..105195) FT /note="HMMPfam hit to PF00107, Zinc-binding dehydrogenases" FT CDS complement(105275..106807) FT /transl_table=11 FT /locus_tag="BP0778" FT /product="putative acetyl-CoA synthetase" FT /note="Similar to Amycolatopsis spHR167 feruloyl-CoA FT synthetase Fcs TR:Q9EY88 (EMBL:AJ290449) (491 aa) fasta FT scores: E(): 2.9e-35, 33.758% id in 471 aa, and to FT Rhizobium loti probable acid-CoA ligase mlr1843 TR:Q98JP7 FT (EMBL:AP002998) (495 aa) fasta scores: E(): 1.3e-35, FT 31.911% id in 492 aa" FT /db_xref="GOA:Q7VZV4" FT /db_xref="InterPro:IPR000873" FT /db_xref="UniProtKB/TrEMBL:Q7VZV4" FT /protein_id="CAE41084.1" FT /translation="MRAAPANLGALFSPARDPAAIALIDLGGESGPREYTYAELDAQAD FT GVARGLPAGARAAILSANRMEFLAAYLGIMRAGLIAVPVNYRLPPDSIDFILRDSGAAL FT VFCDGPRRDAYTVALPSVEFGAGGAGGYARFLDPGPCEAARPADDQPALFLYTSGSTGR FT PKGVKISHAGYLWTVRQRTASTDYGGHCFLVAAPLYHMNALNTIKLALAGQGRLVLMPQ FT FSPAGYLDAIERYRCTWLTAIPTMIALLARETGALAGADLASVAMVRLGSEPLTQRIAD FT SARAMFPRAAFGNGYGATETGALVFGPHPQGLAQPVLSVGYPHPAVQLRLADGADLDAA FT TGVLQVRSPALMLGYHGLPEQTAAAMTHDGFYITGDVMRRDEHGFHYFIGRADDMFVCG FT GENIYPGEVEKMLERHPAIAQACIVPLADPLKGMKPVALVVSRPDATLSEQEVKDYALA FT HGPAYQHPRAVRFVDEMPISSTGKVNRKAALLAAELIAAASPLTQGGHALRR" FT misc_feature complement(105539..106702) FT /note="HMMPfam hit to PF00501, AMP-binding enzyme" FT misc_feature complement(106313..106348) FT /note="ScanRegExp hit to PS00455, Putative AMP-binding FT domain signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS complement(106804..107922) FT /transl_table=11 FT /locus_tag="BP0779" FT /product="conserved hypothetical protein" FT /note="Weakly similar to Vibrio cholerae hypothetical FT protein Vca0936 TR:Q9KL13 (EMBL:AE004420) (312 aa) fasta FT scores: E(): 0.077, 25.258% id in 194 aa. Similar to FT BP2869, 43.785% identity (43.909% ungapped) in 354 aa FT overlap." FT /db_xref="UniProtKB/TrEMBL:Q7VZV3" FT /protein_id="CAE41085.1" FT /translation="MRSKENAMEFHQCYALDYHRARDKFRAAAAAAGASLTQYLHEGRT FT GPDGRPLHTDVARFGRADAPRRLLAISGTHGLEGFFGSAAQIGWMLGDGPASLDPDVAV FT IMVHAINPWGFAHLSRTTENNVDLNRNFIDHGQPHPANPDYAILHPQLLREDWSSAAVA FT AAQQAMEDFTARHGEDRLYDTLARGQYSHPDGLNYGGTAREWSNLTLERIVRDHLAGAR FT KVALIDWHTGIGGYGEPFFLCFNEEGGPLHELAARWWGRDRIVGQRPHGKARPNYQGLL FT FHGVQALLGDVPMCGAVIEFGTRGWHMRRLLRLDLWLKFKADPASERYAMLRADLLDSF FT CPYDQVWREGTLRHAQEITRQAVAGLAAWTET" FT CDS complement(107919..108701) FT /transl_table=11 FT /locus_tag="BP0780" FT /product="putative membrane protein" FT /note="Similar to Pasteurella multocida hypothetical FT protein Pm1265 TR:Q9CLG9 (EMBL:AE006165) (254 aa) fasta FT scores: E(): 1.9e-27, 35.628% id in 247 aa, and to FT Agrobacterium tumefaciens Agr_l_128gMp TR:AAK88848 FT (EMBL:AE008228) (267 aa) fasta scores: E(): 4.4e-29, FT 36.052% id in 233 aa" FT /db_xref="GOA:Q7VZV2" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7VZV2" FT /protein_id="CAE41086.1" FT /translation="MSKSVKSFLYPLITGVVLVILWFASIRIFSVPNYLLPTPEAVLNT FT LRIGYVEGQYWPHFLFTLQSTVYGYLIGCGMALVVGTVLAESETFEQFIYPYIIALQST FT PKVAIAPLLLVWFGFGMASKVVMVALMSFFPMFINTVVGIRQANPAMLDLMKAFKASRS FT HVFFHVKLPAASGHIFAGLQISVVLSLIGAVVSEFISSSQGLGYLIQSASVNMDVATMF FT ACLFSLVVIGLTGTNLIRFLHRKLVFWEQSTTATVQPE" FT misc_feature complement(join(107979..108044,108105..108170, FT 108270..108326,108357..108422,108459..108524, FT 108615..108680)) FT /note="6 probable transmembrane helices predicted for FT BP0780 by TMHMM2.0 at aa 7-29, 59-81, 93-115, 125-144, FT 177-199 and 219-241" FT CDS complement(108713..109576) FT /transl_table=11 FT /locus_tag="BP0781" FT /product="probable ABC transporter, ATP-binding component" FT /note="Similar to Arthrobacter keyseri transporter ATPase FT PtrA TR:Q9AGL2 (EMBL:AF331043) (275 aa) fasta scores: E(): FT 2.6e-35, 48.963% id in 241 aa, and to Pseudomonas FT aeruginosa probable ATP-binding component of ABC FT transporter Pa2294 TR:Q9I1I1 (EMBL:AE004655) (284 aa) fasta FT scores: E(): 1.1e-36, 46.457% id in 254 aa" FT /db_xref="GOA:Q7VZV1" FT /db_xref="HSSP:1G29" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VZV1" FT /protein_id="CAE41087.1" FT /translation="MTSLNLSMIEGGRPASRAAAATLDAVAGAGDGAALLTANNLSVVY FT RTSKGPITAVDNLSLQLGAGEFVSVLGPSGCGKSTLIKVFSGLLKPSGGKALLNGTPID FT EPRGDVGIVFQQPTLLPWKTVLDNVLVPIRALGMNVAEGRAKAMELLRLVGLEKFASNY FT PSELSGGMQQRVGIARGLIHDPALLLMDEPFSALDTMTRDRMSIELQRIWMATRKSALF FT ITHSIAEAVFLSDRIVVMSARPGRIIREVTVNLPRPRTLATLTDPEFTRLCGELRELFD FT QLVQFD" FT misc_feature complement(108848..109384) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(109034..109078) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(109340..109363) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(109595..110692) FT /transl_table=11 FT /locus_tag="BP0782" FT /product="putative exported protein" FT /note="Similar to Agrobacterium tumefaciens Agr_l_3061p FT TR:AAK90103 (EMBL:AE008354) (316 aa) fasta scores: E(): FT 3.6e-08, 27.181% id in 298 aa, and to Rhizobium loti FT Mll8573 protein Mll8573 TR:Q982M7 (EMBL:AP003014) (342 aa) FT fasta scores: E(): 7.9e-11, 26.796% id in 362 aa. Also FT similar to BP2866, 46.197% identity (47.536% ungapped) in FT 355 aa overlap." FT /db_xref="InterPro:IPR015168" FT /db_xref="UniProtKB/TrEMBL:Q7VZV0" FT /protein_id="CAE41088.1" FT /translation="MIGIEHLKRHARRGILAGAAAMALTAAGGAANAAEKVTFAYGINI FT SLSNAPTLMAIGMGYFKEAGLDVQATFFQGAAVMLPQVTQKHITFGWITPDPLVISRQP FT GRDALPVKMFYNGIYLSPFEVVVTKSSPARSLADLKGKKIGVGAMSWGNLAVTKAMMKK FT LGLELQRDYEFVPVGVGATAFRALADDKVQALNLFDTFHVQMEQMGADLRRLPMDQSYR FT ELFSSGWIAHQDTLRERPELVVAFARAAAKGVVACNANPQACVQNFWKLYPATKPADGT FT EEKKLADAVQILKVRLATMLPEQGPQQMGYYTEQSWHDYVDVLHEGGQLSTKDVDVKPL FT YTNQFVKDINDFDAAAVVSAAKQLK" FT misc_feature complement(110594..110692) FT /note="Signal peptide predicted for BP0782 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.992 between residues 33 and 34" FT CDS complement(110761..111687) FT /transl_table=11 FT /locus_tag="BP0783" FT /product="putative dioxygenase" FT /note="Similar to Rhizobium loti Mlr0372 protein Mlr0372 FT TR:Q98MZ7 (EMBL:AP002994) (296 aa) fasta scores: E(): FT 0.00021, 24.510% id in 306 aa, and to Agrobacterium FT tumefaciens Agr_c_2627p TR:AAK87216 (EMBL:AE008068) (292 FT aa) fasta scores: E(): 0.022, 28.525% id in 305 aa" FT /db_xref="GOA:Q7VZU9" FT /db_xref="InterPro:IPR004360" FT /db_xref="UniProtKB/TrEMBL:Q7VZU9" FT /protein_id="CAE41089.1" FT /translation="MTRTEPDQPMGAAPAGLDHVGLYAHDMDAAAAMYQRLGFTLTPLS FT QHSGTHAVTREVVKAGIANRCAMLGHGYIELVAVVDPALDLRGIPEGLARYAGMHIVAF FT DTPDPGQRIAALREAGFAAEPGVLQRYIDTADGPRLARFSQVRTPRQAMPEGLILTLRH FT ETPELLWQARYMDHPNGARALAAAIVAVEDVDAAAARYARYLGVPAERRGGEAWFTLRS FT GRLALVDQAALAARLPGSAAPTLPFPAALAVEVDNLSRTAAVLDDNQVAYRRAGGQLTV FT AARDAGGAAVIFCANAEAAFAGAPEEP" FT misc_feature complement(110800..111120) FT /note="HMMPfam hit to PF00903, Glyoxalase/Bleomycin FT resistance protein/Dioxygenase superfamily" FT misc_feature complement(111253..111621) FT /note="HMMPfam hit to PF00903, Glyoxalase/Bleomycin FT resistance protein/Dioxygenase superfamily" FT CDS complement(111722..113416) FT /transl_table=11 FT /gene="ilvB" FT /locus_tag="BP0784" FT /product="putative acetolactate synthase large subunit" FT /EC_number="2.2.1.6" FT /note="Similar to Escherichia coli acetolactate synthase FT isozyme III large subunit IlvI or B0077 SW:ILVI_ECOLI FT (P00893) (574 aa) fasta scores: E(): 1e-42, 30.515% id in FT 544 aa, and to Methanococcus aeolicus acetohydroxyacid FT synthase large subunit IlvB TR:O08353 (EMBL:U35458) (599 FT aa) fasta scores: E(): 5.4e-59, 34.581% id in 561 aa" FT /db_xref="GOA:Q7VZU8" FT /db_xref="HSSP:1OZH" FT /db_xref="InterPro:IPR000399" FT /db_xref="UniProtKB/TrEMBL:Q7VZU8" FT /protein_id="CAE41090.1" FT /translation="MTQLNGAEAMVRMLQLNGVKHIFGLCGDTSLPFCDALQRLDHGME FT HILTRDERSAAYMADAYARVTGKVGVCEGPSGGGATYLLPGLVEANESSVAVLGITSDV FT SVGSRGKYPLTELDQEALYRPLTKWNTTIDRADQIPGAVRAAFRAMTTGRPGTAHLCLP FT YDVQKHEVDPADVWAQPGHDRFPAMRFAPDPAAIEQAAARLVGARAPVILCGGGVVISG FT ACAALEELAVTLNAPVCTTVSGQGSLADTHPLNAGVVGSNGGILATRAVLADADVVLLI FT GCRAGSTSTEHWRFPSREVPILHIDSDPMVIAANYRTDVAMVGDALLALQALNREVHAR FT IDARPTDAVDGKAVAAKAKGAKLAALQPLAASLDAPIRPERVVDALNRLLPAESVVVAD FT PGTPCPYFSAYFEASKPGRHFITNRAHGALGFSMAAGMGAAIGRPSAKVVSVMGDGSFG FT FTVGEMETIVRRKVPLLMIVLSNSVYGWIKASQKAGYQERYFSVDFNRTDHARVAEAYG FT VKAWRVEDPRELDGVLKAAIEYGGPALVDIIVQPLQEAAAPVSQWMG" FT misc_feature complement(111776..113377) FT /note="HMMPfam hit to PF00205, Thiamine pyrophosphate FT enzyme, central domain" FT misc_feature complement(112049..112108) FT /note="ScanRegExp hit to PS00187, Thiamine pyrophosphate FT enzymes signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS complement(113616..114551) FT /transl_table=11 FT /locus_tag="BP0785" FT /product="putative mechanosensitive channel protein" FT /note="Similar to Rhizobium loti probable integral membrane FT protein Mlr0973 TR:Q98LL9 (EMBL:AP002996) (410 aa) fasta FT scores: E(): 1.5e-13, 28.019% id in 207 aa, and to FT Rhizobium meliloti conserved hypothetical membrane protein FT Smb20863 TR:CAC49557 (EMBL:AL603646) (343 aa) fasta scores: FT E(): 6.1e-13, 26.054% id in 261 aa" FT /db_xref="GOA:Q7VZU7" FT /db_xref="InterPro:IPR006685" FT /db_xref="UniProtKB/TrEMBL:Q7VZU7" FT /protein_id="CAE41091.1" FT /translation="MIPGSRIAWLLWPTVLCSLSVVVYVFHAYLFQRYLPGSNPESFRR FT FSAAAAFYAFAWLLARMAAAALTRKAKKKRKTPRLLRELVSATLFAIATVATIGVFLGQ FT SAGGILASSGLIIAILGFAIRNVLADVLSGIAIGVEAPYRIGDWVGFDATIRGRVTEIG FT WRTTRILTPNDTYMILPNSQISRQMLTNYSAPRKQYQGELEIVLSHDISISDGKQLLFD FT AALSTSPAESLAPGQKPRVRATAYTAEGVTYKIKYWVPQFSDSTDCRDAILVAIDDAIR FT SQGLALPVATPPRPQAIALRQPDTPDNPGA" FT misc_feature complement(113688..114308) FT /note="HMMPfam hit to PF00924, Mechanosensitive ion FT channel" FT misc_feature complement(join(114168..114233,114246..114311, FT 114348..114413,114459..114524)) FT /note="4 probable transmembrane helices predicted for FT BP0785 by TMHMM2.0 at aa 9-31, 46-68, 80-102 and 106-128" FT CDS complement(114657..115607) FT /transl_table=11 FT /locus_tag="BP0786" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE41092.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 114657..114688 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(114657..115709) FT misc_feature complement(114693..115226) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(115284..115349) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(115678..115709) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(115689..116300) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0787" FT /product="N-terminal region of a putative membrane protein FT (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. The C-terminal region of this CDS is FT BP2450. Similar to Escherichia coli hypothetical protein FT YhfK or B3358 SW:YHFK_ECOLI (P45537) (700 aa) fasta scores: FT E(): 0.036, 24.365% id in 197 aa, and to Pyrococcus abyssi FT hypothetical 47.1 kDa protein Pab0655 TR:Q9V021 FT (EMBL:AJ248286) (431 aa) fasta scores: E(): 1.5, 24.684% id FT in 158 aa" FT /db_xref="PSEUDO:CAE41093.1" FT misc_feature complement(join(115800..115865,115911..115976, FT 115998..116063,116199..116264)) FT /note="4 probable transmembrane helices predicted for FT BP0787 by TMHMM2.0 at aa 21-43, 88-110, 117-139 and FT 154-176" FT CDS 116771..118486 FT /transl_table=11 FT /gene="ilvI" FT /locus_tag="BP0789" FT /product="acetolactate synthase large subunit" FT /EC_number="2.2.1.6" FT /note="Similar to Escherichia coli acetolactate synthase FT isozyme III large subunit IlvI or B0077 SW:ILVI_ECOLI FT (P00893) (574 aa) fasta scores: E(): 4.5e-129, 56.098% id FT in 574 aa, and to Neisseria meningitidis acetolactate FT synthase III, large subunit Nmb1577 TR:Q9JYI0 FT (EMBL:AE002508) (575 aa) fasta scores: E(): 2.2e-152, FT 64.311% id in 566 aa" FT /db_xref="GOA:Q7VZU6" FT /db_xref="HSSP:1JSC" FT /db_xref="InterPro:IPR012846" FT /db_xref="UniProtKB/TrEMBL:Q7VZU6" FT /protein_id="CAE41094.1" FT /translation="MELNGADIVVRCLAEEGVEHVFGYPGGAVLYIYDAIFKQDKFQHI FT LVRHEQAAVHAADAYSRASQKVGVCLVTSGPGVTNAVTGIATAYMDSIPMVIISGQVPT FT AAIGEDAFQECDTVGITRPCVKHNFLVRDVKDLAETMRRAFFIARTGRPGPVLVDIPKD FT ITVAQCKYAPPKGEISMRSYAPVNKGHQGQIKKAVQMLLHAERPMIYTGGGVILSDAAE FT ALRHLVDQTGAPCTNTLMGLGAMPATDHRFLGMPGMHGTYEANMAMQHCDVLLAIGARF FT DDRVIGNPRHFAQNARKIIHIDIDPSSISKRVRVDVPIVGNVKDVLADLSAQYDLARAD FT AKPAPIEKWWQQIEAWRGKECLKYAGSDEVIKPQFVVEKLWEVTGGDAFVTSDVGQHQM FT WAAQYYKFNKPRRWINSGGLGTMGVGLPYAMGVQMANPGADIAVITGEASIQMNIQELS FT TCHQYHLTPKIICLNNRFLGMVRQWQQIDYGSRYSESYMDSLPDFVKVAEAYGHVGLRI FT ERPADVEPALREAFKKHKDRLVFLDFITDRTENVWPMVKAGRGLTEMLLGSEDL" FT misc_feature 116807..118399 FT /note="HMMPfam hit to PF00205, Thiamine pyrophosphate FT enzyme, central domain" FT CDS 118497..118988 FT /transl_table=11 FT /gene="ilvH" FT /gene_synonym="brnP" FT /locus_tag="BP0790" FT /product="acetolactate synthase small subunit" FT /EC_number="2.2.1.6" FT /note="Similar to Escherichia coli acetolactate synthase FT isozyme III small subunit IlvH or BrnP or B0078 FT SW:ILVH_ECOLI (P00894) (163 aa) fasta scores: E(): 3.7e-31, FT 55.828% id in 163 aa, and to Neisseria meningitidis FT acetolactate synthase isozyme III small subunit IlvH or FT Nma1765 or Nmb1576 TR:Q9JRF4 (EMBL:AL162757) (163 aa) fasta FT scores: E(): 8.5e-38, 66.871% id in 163 aa" FT /db_xref="GOA:Q7VZU5" FT /db_xref="InterPro:IPR019455" FT /db_xref="UniProtKB/TrEMBL:Q7VZU5" FT /protein_id="CAE41095.1" FT /translation="MKHVISVLMENEPGALSRVVGLFSARGYNIETLTVAPTEDATLSR FT LTVVTVGSDEVIEQITKHLNRLVDVVKVVDLTEGAHIERELMLIKVRAVGKEREEMKRM FT ADIFRGRIIDVTDKSYTIELTGVQEKIQAFIEALDRSAILETVRTGVSGIGRGERILKI FT " FT misc_feature 118497..118610 FT /note="ScanRegExp hit to PS00430, TonB-dependent receptor FT proteins signature 1." FT misc_feature 118503..118724 FT /note="HMMPfam hit to PF01842, ACT domain" FT CDS 119061..120077 FT /transl_table=11 FT /gene="ilvC" FT /locus_tag="BP0791" FT /product="ketol-acid reductoisomerase" FT /EC_number="1.1.1.86" FT /note="Similar to Zymomonas mobilis ketol-acid FT reductoisomerase IlvC SW:ILVC_ZYMMO (Q9X5F8) (339 aa) fasta FT scores: E(): 3e-80, 62.242% id in 339 aa, and to Neisseria FT meningitidis ketol-acid reductoisomerase IlvC or Nmb1574 FT SW:ILVC_NEIMB (Q9JYI2) (337 aa) fasta scores: E(): 1.7e-93, FT 73.373% id in 338 aa" FT /db_xref="GOA:Q7VZU4" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/Swiss-Prot:Q7VZU4" FT /protein_id="CAE41096.1" FT /translation="MKVFYDKDCDLSLVKGKTVAIIGYGSQGHAHALNLHDSGVKVVVG FT LRKGGASWNKAANAGLEVAEVAEAVKRADIVMMLLPDENIAAVYRDEVHANIKAGAALA FT FAHGFNVHYGQVVPREDIDVIMAAPKAPGHTVRSTYSQGGGVPHLIAVYQDKSGSARDV FT ALSYASANGGGRAGIIETNFREETETDLFGEQAVLCGGTVELIKAGFDTLVEAGYAPEM FT AYFECLHELKLIVDLIYEGGIANMNYSISNNAEFGEYETGPKVVTDATRQAMRECLTAI FT QTGEYAKKFILENAAGAPTLTSRRRINAESQIEQVGGKLRAMMPWIAANKLVDKAKN" FT misc_feature 119067..120041 FT /note="HMMPfam hit to PF01450, Acetohydroxy acid FT isomeroreductase, catalytic domain" FT CDS 120245..121024 FT /transl_table=11 FT /gene="pssA" FT /locus_tag="BP0792" FT /product="putative CDP-diacylglycerol--serine FT O-phosphatidyltransferase protein" FT /EC_number="2.7.8.8" FT /note="Similar to Agrobacterium sp31749 phosphatidylserine FT synthase TR:AAL01116 (EMBL:AF410774) (274 aa) fasta scores: FT E(): 2.3e-21, 40.930% id in 215 aa, and to Pseudomonas FT aeruginosa phosphatidylserine synthase PssA or Pa4693 FT TR:Q9HVA3 (EMBL:AE004883) (271 aa) fasta scores: E(): FT 2.5e-47, 61.778% id in 225 aa" FT /db_xref="GOA:Q7VZU3" FT /db_xref="InterPro:IPR000462" FT /db_xref="UniProtKB/TrEMBL:Q7VZU3" FT /protein_id="CAE41097.1" FT /translation="MPNFSMRDPENRHRSIYLLPNAFTTAALFAGFYAVVQAMNDRFET FT AAIAIFVAMVLDGMDGRVARLTNTQSAFGEQYDSLSDMTSFGVAPALVIYEWILQDLGR FT WGWLAAFVYVAGAALRLARFNTNIAVVDKRFFQGLPSPAAAALVAGFVWLAIDNKLPIH FT DSIMAWVAFVLTMYAGVAMVSNASFFSGKNFALGRSVPFWGILLVVAVFVFVSSDPPVV FT LFGLFVLYGLSGWVVMAWRWNRARRLQQERRSGHHSP" FT misc_feature join(120293..120361,120557..120610,120647..120715, FT 120743..120811,120824..120892,120905..120973) FT /note="6 probable transmembrane helices predicted for FT BP0792 by TMHMM2.0 at aa 17-39, 105-122, 135-157, 167-189, FT 194-216 and 221-243" FT misc_feature 120422..120490 FT /note="ScanRegExp hit to PS00379, CDP-alcohol FT phosphatidyltransferases signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS complement(121043..121570) FT /transl_table=11 FT /locus_tag="BP0793" FT /product="putative lipoprotein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VZU2" FT /protein_id="CAE41098.1" FT /translation="MPPIRRPIGRALRLAGAGMLLAALAACANLNQVPPGTPLADVQAQ FT FGAPNFACDLPNGGQRVIWTQQPYGQFAWGANVGPDGRVDRVVEVLTDEHFKVLGTGTW FT TADQVRCEFGPPAEIKQVGLPSVRQVVWSYRYRESRVWNSLMYVYMGREGDRVTRFHPG FT PDPMYDEDWRWH" FT misc_feature complement(121490..121522) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 121864..122133 FT /transl_table=11 FT /gene="rpsO" FT /gene_synonym="secC" FT /locus_tag="BP0794" FT /product="30S ribosomal protein S15" FT /note="Similar to Escherichia coli 30S ribosomal protein FT S15 RpsO or SecC or B3165 SW:RS15_ECOLI (P02371) (88 aa) FT fasta scores: E(): 7.3e-18, 69.136% id in 81 aa, and to FT Photorhabdus luminescens 30S ribosomal protein S15 RpsO or FT RprA SW:RS15_PHOLU (P41120) (88 aa) fasta scores: E(): FT 4.3e-19, 67.045% id in 88 aa" FT /db_xref="GOA:Q7VZU1" FT /db_xref="HSSP:1AB3" FT /db_xref="InterPro:IPR009068" FT /db_xref="UniProtKB/Swiss-Prot:Q7VZU1" FT /protein_id="CAE41099.1" FT /translation="MSVADIKKSEIVAQFQRAQGDTGSPEVQVALLTARINELTGHFKE FT HMKDHHSRRGLLRMVSRRRKLLDYLKGRNPDSYRALIEKLGLRK" FT misc_feature 121930..122127 FT /note="HMMPfam hit to PF00312, Ribosomal protein S15" FT misc_feature 121978..122070 FT /note="ScanRegExp hit to PS00362, Ribosomal protein S15 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 122224..124383 FT /transl_table=11 FT /gene="pnp" FT /locus_tag="BP0795" FT /product="polyribonucleotide nucleotidyltransferase" FT /EC_number="2.7.7.8" FT /note="Similar to Escherichia coli polyribonucleotide FT nucleotidyltransferase Pnp or B3164 SW:PNP_ECOLI (P05055) FT (711 aa) fasta scores: E(): 2.2e-165, 62.691% id in 721 aa, FT and to Neisseria meningitidis putative polyribonucleotide FT nucleotidyltransferase Pnp or Nma0969 TR:Q9JV72 FT (EMBL:AL162754) (706 aa) fasta scores: E(): 1.9e-172, FT 65.260% id in 711 aa" FT /db_xref="GOA:Q7VZU0" FT /db_xref="HSSP:1E3P" FT /db_xref="InterPro:IPR003029" FT /db_xref="UniProtKB/Swiss-Prot:Q7VZU0" FT /protein_id="CAE41100.1" FT /translation="MFNKVTKTFQYGQHSVVLETGEMARQASGAVLVSVEDTVVLATVV FT AAKKAKAGQDFFPLTVDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFP FT EGFYNDVQVVIHTLSVNPDIDPDIPAMIGASAALAISGIPFNGPIGAARVGYVDGQYVL FT NPTATQLKSSKMDLVVAGTENAVLMVESEAKQLSEEIMLGGVVFGHEQMQAAINAIHDL FT VRDAGKPDWDWQPAPKNEALIAAVSAAAQEGLNAAYQIREKQARTTKLREVYAAVQAAM FT AEQAAQAGQPAPDSVGVDNILFDLEARIVRSQILNGEPRIDGRDTRTVRPISIRLGVLP FT RAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIG FT VPKRREIGHGRLAKRALLPLLPAPEDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDA FT GVPTNDHVAGVAMGLILDSGKFAVLTDILGDEDHLGDMDFKVAGTETGITALQMDIKIQ FT GITKEIMQVALAQAREGRLHILGKMRDALEGSRTELSAFAPRMLTIKINPEKIRDVIGK FT GGATIRALTEETGTQIDISDDGTIVIASVDETQAKEAQRRIVELTADVEVGQIYDGSVL FT RLLDFGAIVQVLPGRDGLLHISEIANYRIANINDVLKVGQPVRVKVIEADDKGRLRLSI FT KAIGGIEQQQSGTAEPAAQSEPQAE" FT misc_feature 122233..122856 FT /note="HMMPfam hit to PF01138, 3' exoribonuclease family" FT misc_feature 123181..123825 FT /note="HMMPfam hit to PF01138, 3' exoribonuclease family" FT misc_feature 123907..124035 FT /note="HMMPfam hit to PF00013, KH domain" FT misc_feature 124090..124308 FT /note="HMMPfam hit to PF00575, S1 RNA binding domain" FT CDS 124504..125223 FT /transl_table=11 FT /locus_tag="BP0796" FT /product="putative lipoprotein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3069 TR:Q9HZD9 (EMBL:AE004731) (205 aa) fasta FT scores: E(): 3.5e-40, 54.634% id in 205 aa, and to FT Pseudomonas sp hypothetical 28.9 kDa protein Orf58 FT TR:AAK50290 (EMBL:U66917) (257 aa) fasta scores: E(): FT 1.1e-35, 45.852% id in 229 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VZT9" FT /protein_id="CAE41101.1" FT /translation="MTSRRLAALSGWAASVLLAGCIAPGGSGGPRGESMSADQFMQTDF FT NRTVTLEIRDNLASLDTLLDKLYRRNPREWRKSGVADQAAAVARVKRLIEERRPPAGLA FT GLRDIQVLAVSLDPAYGGDRVAAFVYGLADTLIAAHNDKTRIYLSDVLDGQRIYNAARN FT VEAAAWLLASRRTAQGEPLLLANEMSAAATNLSFEREFGAIIGRLDLIANLLGENSRRI FT GINYAQGLLFFNFLPVR" FT misc_feature 124534..124566 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(125220..126170) FT /transl_table=11 FT /locus_tag="BP0797" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q84CT8" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q84CT8" FT /protein_id="CAE41102.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT repeat_region 125220..125251 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(125220..126272) FT misc_feature complement(125256..125789) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(125847..125912) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(126241..126272) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 126311..127528 FT /transl_table=11 FT /gene="tdcB" FT /locus_tag="BP0798" FT /product="threonine dehydratase catabolic" FT /EC_number="4.3.1.19" FT /note="Similar to Escherichia coli threonine dehydratase FT catabolic TdcB or B3117 or Z4469 or Ecs3997 SW:THD2_ECOLI FT (P05792) (329 aa) fasta scores: E(): 1.6e-41, 45.246% id in FT 305 aa, and to Caulobacter crescentus threonine dehydratase FT Cc3635 TR:Q9A2D0 (EMBL:AE006022) (400 aa) fasta scores: FT E(): 4.1e-72, 52.897% id in 397 aa" FT /db_xref="GOA:Q7VZT8" FT /db_xref="HSSP:1JBQ" FT /db_xref="InterPro:IPR001926" FT /db_xref="UniProtKB/TrEMBL:Q7VZT8" FT /protein_id="CAE41103.1" FT /translation="MIDLAAIQTARDILRGQVLNTPFTHSRTLSDILGAEIWLKFENLQ FT FTASFKERGALNRMLNLTEAERAAGVIAVSAGNHAQGVAYHAQRMGVPAVIVMPRFTPT FT VKVANTRRFGAEVVLAGDTFDDAKARGYELARERGLVMIHPYDDPAVIAGQGTVALEML FT QARPDLDAIVVGIGGGGLIAGIATAAKAIKPDIEIIGVQTERFPSMYAAVKGVAMESGH FT YTIAEGIAVKSPGTLTQEIVTRLVDHIELVNESDIEHAIVVLLEIEKTVVEGAGAAGLA FT ALLRLQERRDERFRGKRLGLVLTGGNIDPLMLGELIERGMVRAGRLARIRVDLRDLPGA FT LAQATKLIADAHANITEVHHQRAFTTLPVRNVEVDFVLQTRGHDHIQEVIAVLNAAGFA FT ASNHDH" FT misc_feature 126350..127228 FT /note="HMMPfam hit to PF00291, Pyridoxal-phosphate FT dependent enzyme" FT misc_feature 127292..127522 FT /note="HMMPfam hit to PF01842, ACT domain" FT CDS complement(127522..128133) FT /transl_table=11 FT /locus_tag="BP0799" FT /product="conserved hypothetical protein" FT /note="Similar to Sphingomonas aromaticivorans hypothetical FT 21.4 kDa protein TR:O85864 (EMBL:AF079317) (196 aa) fasta FT scores: E(): 0.0065, 28.571% id in 161 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VZT7" FT /protein_id="CAE41104.1" FT /translation="MPYLNLIPNPAPPFVVLDACVLMSGIARQLLLRVARTGVFQPVWT FT ERIGEEWRRNAARLWDIPAAALAAQWEATNASFPRALEVDTQPYETGLRYSDPKDFHVI FT AAGLARRARCGLPQAPATLVMTWNLKDFNRSELRRQGLDAFSPDHLLARWWQADPAALR FT DALATVADDYVALGREPLPLAAILQRERLYRLRRLADADQ" FT tRNA complement(128193..128277) FT /note="tRNA Leu anticodon TAA, Cove score 79.53" FT CDS 128767..129744 FT /transl_table=11 FT /locus_tag="BP0800" FT /product="probable zinc-binding dehydrogenase" FT /note="Similar to Rhizobium loti NADPH quinone FT oxidoreductase Mll3767 TR:Q98FI0 (EMBL:AP003002) (326 aa) FT fasta scores: E(): 3e-60, 57.669% id in 326 aa, and to FT Rhizobium meliloti putative oxidoreductase protein Smc00034 FT TR:CAC45525 (EMBL:AL591785) (327 aa) fasta scores: E(): FT 8.3e-58, 53.681% id in 326 aa" FT /db_xref="GOA:Q7VZT6" FT /db_xref="HSSP:1IYZ" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VZT6" FT /protein_id="CAE41105.1" FT /translation="MRAVEITRPGGPEVLVPTERSVPEPASGEVLIKVSAAGVNRPDVL FT QRKGNYAPPPGASDLPGLEVAGEIVGGDAAAGGFAIGDKVCALVAGGGYAEYVVAPAPQ FT CLPIPRGLTEIEAAGLPETYFTVWSNVFDRGRLAAGEALLVHGGASGIGTTAIQLARAM FT GNKVYATVGSDERARAVEALGAALGINYKTQDYVKEVLDATGGAGVDVVLDMVAGEYIG FT RNLKCLADDGRIVIIALLGGAHANVDCNQVLRRRLTITGSTLRPRPVEFKGEIARALRE FT RVWPLLENGTLKPVVHATLPLEQAAAAHAMMEAGENIGKIILTV" FT misc_feature 128806..129741 FT /note="HMMPfam hit to PF00107, Zinc-binding dehydrogenases" FT CDS 129888..130634 FT /transl_table=11 FT /gene="tpiA" FT /gene_synonym="tpi" FT /locus_tag="BP0801" FT /product="triosephosphate isomerase" FT /EC_number="5.3.1.1" FT /note="Similar to Escherichia coli triosephosphate FT isomerase TpiA or Tpi or B3919 or Z5464 or Ecs4844 FT SW:TPIS_ECOLI (P04790) (255 aa) fasta scores: E(): 4.1e-37, FT 48.178% id in 247 aa, and to Pseudomonas aeruginosa FT triosephosphate isomerase TpiA or Pa4748 SW:TPIS_PSEAE FT (Q9HV51) (251 aa) fasta scores: E(): 3.4e-41, 53.846% id in FT 247 aa" FT /db_xref="GOA:Q7VZT5" FT /db_xref="InterPro:IPR000652" FT /db_xref="UniProtKB/Swiss-Prot:Q7VZT5" FT /protein_id="CAE41106.1" FT /translation="MTTAENRARLVLGNWKMHGNLAENAALLAELRAADAAAHCEMGVC FT VPFPYLAQTAAALQGSAIGWGAQDVSAHAKGAYTGEVAAPMLAEFGCRWVLVGHSERRT FT LHAESDQLVADKARAALEAGLTPVVCVGESLQEREGGNTLGVIERQLEPVLALGRDALV FT RMVLAYEPVWAIGTGRTASPEQAQEVHSAIRVALDGLQASQVRVLYGGSVKGANAASLF FT AMPDIDGGLVGGASLVAEEFLRIAAA" FT misc_feature 129906..130631 FT /note="HMMPfam hit to PF00121, Triosephosphate isomerase" FT misc_feature 130389..130421 FT /note="ScanRegExp hit to PS00171, Triosephosphate isomerase FT active site. Confirmed by InterPro eMOTIF pattern match." FT CDS 130656..131102 FT /transl_table=11 FT /gene="secG" FT /locus_tag="BP0802" FT /product="protein-export membrane protein" FT /note="Similar to Escherichia coli protein-export membrane FT protein SecG or B3175 or Z4537 or Ecs4054 SW:SECG_ECOLI FT (P33582) (110 aa) fasta scores: E(): 3.4e-06, 35.965% id in FT 114 aa, and to Xylella fastidiosa protein-export membrane FT protein Xf0304 TR:Q9PGJ6 (EMBL:AE003883) (132 aa) fasta FT scores: E(): 1.3e-08, 39.098% id in 133 aa" FT /db_xref="GOA:Q7VZT4" FT /db_xref="InterPro:IPR004692" FT /db_xref="UniProtKB/TrEMBL:Q7VZT4" FT /protein_id="CAE41107.1" FT /translation="MSLMLTVLLVVQVVSALAIIVLVLLQQGKGADMGSAFGSGSAGSL FT FGATGAANFLSRTTKWAAVVFFVSTAGLAYVTHKGPSGPAIDSGVMQNFPQDRSVPQAP FT GSAPAGSGSSVPQAPGSGVPAAPAQPDASVPQAPWRFCPWAFTC" FT misc_feature 130656..130796 FT /note="Signal peptide predicted for BP0802 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.887) with cleavage site FT probability 0.417 between residues 47 and 48" FT misc_feature join(130674..130727,130755..130823) FT /note="2 probable transmembrane helices predicted for FT BP0802 by TMHMM2.0 at aa 7-24 and 34-56" FT tRNA 131153..131237 FT /note="tRNA Leu anticodon GAG, Cove score 63.68" FT CDS 131890..134121 FT /transl_table=11 FT /gene="betT" FT /locus_tag="BP0804" FT /product="high-affinity choline transport protein" FT /note="Similar to Escherichia coli high-affinity choline FT transport protein BetT or B0314 or Z0401 or Ecs0360 FT SW:BETT_ECOLI (P17447) (677 aa) fasta scores: E(): FT 2.5e-111, 44.296% id in 675 aa, and to Erwinia amylovora FT high-affinity choline transport protein BetT TR:Q9F806 FT (EMBL:AF264948) (676 aa) fasta scores: E(): 1.5e-109, FT 43.004% id in 679 aa. Also similar to BP0831, 37.348% FT identity (38.522% ungapped) in 656 aa overlap." FT /db_xref="GOA:Q7VZT3" FT /db_xref="InterPro:IPR000060" FT /db_xref="UniProtKB/TrEMBL:Q7VZT3" FT /protein_id="CAE41108.1" FT /translation="MSITPPDDEGAEPGPSSQAPHAQAAALRRPIERSRFGGSQRRPER FT QDGDDAPVSRSDLSKGPEEVLERRTASINWRVLLVSSAVIVAFSVWAILVPGDARMRMK FT TAVDWIAANLGWYYVLTMTLVIGFVLWVAFSKEGDVRLGPDHSRPQYRLSTWVAMLFAA FT GVGIDMLFFSVTGPVVQYLHSPSGEGGTAAAMQDAVVWTMFHYGVAGWSMYALLGMAMG FT YFAYRWGMPLSIRAALYPLLGKRVRGPLGDGISIIALVGTVFGVATSMGIGVVLLNVGF FT SLIFGLEQGLSLQIALVVGAVILTIGATTSGVDRGIRWISELNLWSAVAMMVYILLTGQ FT TAFLLNALSENIGRFLVTFPARTLQTFAYEPGGPEWMGGWTLFFWAFWLAWGPFVGVFL FT ARISRGWTLREFVIAAITAPVLCDFIIVSLFGNSALYHVLQGDTAFAALAVESSERGWY FT ALLAMFPGAMFLIGLATLSGLLFYLTSANSGAMVMSNFSASIPDPSHDGPKWLRIFWAV FT LTAVLTVAMLLAGGVTTMEYATLIFALPVTIIAYTVMASFYKVLRMERAEREGQVLRRP FT SMAPMGGHLPERSWKQRLEQLHAFASLRQATQFLDHTVRPALGDVAAEFRNQGYEVASE FT SLASERGIEEPLLRVSMDGFRAFQYHVAVVEAPVPMFSGRMSRETDVYYRLEVFTQTGS FT GGYDLMGLTRQQVIDDVLERFEAHLAFLTFSTNTDTASVLTPPAPARNP" FT misc_feature join(132106..132174,132217..132285,132346..132414, FT 132499..132567,132649..132717,132760..132828, FT 132862..132930,133015..133083,133120..133188, FT 133270..133338,133426..133494,133504..133572) FT /note="12 probable transmembrane helices predicted for FT BP0804 by TMHMM2.0 at aa 73-95, 110-132, 153-175, 204-226, FT 254-276, 291-313, 325-347, 376-398, 411-433, 461-483, FT 513-535 and 539-561" FT misc_feature 132118..133581 FT /note="HMMPfam hit to PF02028, BCCT family transporter" FT CDS complement(134144..134944) FT /transl_table=11 FT /locus_tag="BP0805" FT /product="probable transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa3174 TR:Q9HZ60 (EMBL:AE004741) FT (242 aa) fasta scores: E(): 1.4e-13, 31.048% id in 248 aa, FT and to Rhizobium meliloti putative transcription regulator FT protein Smc00263 TR:CAC46270 (EMBL:AL591788) (282 aa) fasta FT scores: E(): 1.4e-14, 30.000% id in 250 aa" FT /db_xref="GOA:Q7VZT2" FT /db_xref="InterPro:IPR005471" FT /db_xref="UniProtKB/TrEMBL:Q7VZT2" FT /protein_id="CAE41109.1" FT /translation="MENERGTVERIVRLIAFLASQDDDVGVKDIADELQLPHSTAHRLL FT QQLVALNLMQRVQGARRYAFGPEMYRLGAMISNKVNVVQLASAPLHRIVAYTNESCALA FT LYRDQDATLVFAKQVESANQLRYQLDLYRPVSVLWGASGHAVLAHLPPERVRTLLKKEP FT LSPTGLAALPARELNRDLKQIREQGYSVSTRGEKIEGAAGISTPIFGTGGHVIGCFSLF FT IPRIRYPEHRETELAQLLVREAGALSDVLAGRQAAPAGAPGAAR" FT misc_feature complement(134195..134758) FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator" FT misc_feature complement(134807..134872) FT /note="Predicted helix-turn-helix motif with score 1203 FT (+3.28 SD) at aa 70-91, sequence VGVKDIADELQLPHSTAHRLLQ" FT CDS 135226..136458 FT /transl_table=11 FT /locus_tag="BP0806" FT /product="methylaspartate ammonia-lyase" FT /EC_number="4.3.1.2" FT /note="Similar to Clostridium tetanomorphum methylaspartate FT ammonia-lyase SW:MAAL_CLOTT (Q05514) (413 aa) fasta scores: FT E(): 4.5e-51, 36.520% id in 408 aa, and to Citrobacter FT amalonaticus 3-methylaspartate ammonia-lyase TR:O66145 FT (EMBL:AB005294) (413 aa) fasta scores: E(): 1e-53, 38.107% FT id in 412 aa. Also similar to BP3177, 40.500% identity FT (40.704% ungapped) in 400 aa overlap." FT /db_xref="GOA:Q7VZT1" FT /db_xref="HSSP:1KKO" FT /db_xref="InterPro:IPR001354" FT /db_xref="UniProtKB/TrEMBL:Q7VZT1" FT /protein_id="CAE41110.1" FT /translation="MRVQRLLATDGIGGYYWRDQEAIGQGAPRDGFLYRGAPVTPGFTS FT IIQVSSTVLLTGVADDGSELYGDCATVNHAFRSGRQQAPDAASLIAQAEGPLSRWLAQC FT DLSSFRDAAAQLDTMRLDGQPLHMALRYGLSQLLLQAVAAHHRVTMAEILAREYGLTLA FT DTPCDLLGSCGGNWYENVDKAIVRELPYFPQTAMVRTDQLDELPAYAEWISQRIRAVGR FT PDFFPTLHYDLHGLLSQRVGDDLDAALVYLRKVEAASAPYPVLFEDPLDAGERGAQIAL FT MGRLREALRRAGSGIRLIADEWCNTREDVREFVAQGCCDLIQIKMPDLGGVDNTVQACL FT ICRDGGVGVYLGGSCNETDISARVAAHVALAVRPVEFLGKPGLGLDEGVMIVTNEMQRA FT IRSYRTRLSAA" FT CDS 136569..137558 FT /transl_table=11 FT /locus_tag="BP0807" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 1.3e-34, 35.737% id in 319 aa, and to Agrobacterium FT tumefaciens Agr_l_312p TR:AAK88723 (EMBL:AE008213) (329 aa) FT fasta scores: E(): 3.9e-38, 39.048% id in 315 aa" FT /db_xref="GOA:Q7VZT0" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VZT0" FT /protein_id="CAE41111.1" FT /translation="MTRWQQWIIAALGCGAACLGIATSALAAPAGYPKGPVTLVVPTGP FT GGGTDLAARAFSERLSAILGQPVVVDNRAGAGGIIGTQDVAKSRPDGHTLLISSNQFGI FT LPAVQDNLPFDPVKDFIPVTSIGLIPTLVLVNPSLPVRSVAELIDYARKQPGGVQYASA FT GIGSPNHLFAAMFGSMADVPMMHVPFRGTSPALVAVAGGQTAVAFASQPASQSFVAAGK FT LRAIAVTSARRLPSLPDLPPVSDTVPGYDADIWLGVWAVAGTPDTVVDAIHAAFEEALK FT DPRVIDSLGKMGIVVATRSRQDFTAMVEREIGKWARVVAEAGDGFQKQ" FT misc_feature 136569..136649 FT /note="Signal peptide predicted for BP0807 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 27 and 28" FT misc_feature 136578..136610 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 136587..136655 FT /note="1 probable transmembrane helix predicted for BP0807 FT by TMHMM2.0 at aa 7-29" FT CDS 137589..138977 FT /transl_table=11 FT /locus_tag="BP0808" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0881 TR:Q9I564 (EMBL:AE004522) (450 aa) fasta FT scores: E(): 8e-29, 33.842% id in 393 aa, and to FT Agrobacterium tumefaciens Agr_l_2924p TR:AAK90029 FT (EMBL:AE008346) (448 aa) fasta scores: E(): 4.2e-31, FT 35.280% id in 428 aa" FT /db_xref="GOA:Q7VZS9" FT /db_xref="InterPro:IPR005656" FT /db_xref="UniProtKB/TrEMBL:Q7VZS9" FT /protein_id="CAE41112.1" FT /translation="MQLASPSPAVGVTRPLADAIVATASSRLGAATLQTAQACLLDSLA FT VTLAGAQEPLVAVLDRTLAGFGGAGQATLIGRGRRAPLPDAALVNGAAGHAFDFDDMHI FT ESAMHPSVPVVAAALAVAEHEGADGAALLRALALGIEAQLRIGEAVRPHHYQRGWHATG FT TLGHFGAAVAAGCLLGLDAQQTTMALGIAGTQASGPKETFGTMSKPLHAGQAARNGVMA FT ALLARQGYTSTEDILDGHYGFGRVCGDGAHWDGLLDGWGERWSMHDILYKPHASSFCTQ FT ALIECALALRATPGFAWTAVARIHGEVSAMSMANARIVEPRDGMQAKFSLSHAIAQGLV FT HGQATIADFSDARAREPALRALRARTTIAQGAGLAWPEAIVTVTLADGSQLRRHADLRA FT STATSQDKWRVTLGKFMSVAGAVPGFASCDAVRDAVLRLPEAPGAVAALMALLRPQAAT FT PSGA" FT CDS join(139025..139294,139294..140517) FT /pseudo FT /transl_table=11 FT /gene="argH" FT /locus_tag="BP0809" FT /product="putative argininosuccinate lyase (Pseudogene)" FT /EC_number="4.3.2.1" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 90. The sequence has been checked FT and believed to be correct. Similar to Escherichia coli FT argininosuccinate lyase ArgH or B3960 SW:ARLY_ECOLI FT (P11447) (457 aa) fasta scores: E(): 1.4e-30, 31.127% id in FT 408 aa, and to Rhizobium meliloti probable FT argininosuccinate lyase AsaL protein TR:CAC47226 FT (EMBL:AL591791) (467 aa) fasta scores: E(): 3.3e-38, FT 33.183% id in 443 aa" FT /db_xref="PSEUDO:CAE41113.1" FT misc_feature join(139121..139294,139294..139965) FT /note="HMMPfam hit to PF00206, Lyase" FT misc_feature 139196..139225 FT /note="ScanRegExp hit to PS00215, Mitochondrial energy FT transfer proteins signature." FT variation 139295 FT /note="(C)1 in pertussis; (C)2 in parapertussis" FT CDS 140576..141559 FT /transl_table=11 FT /locus_tag="BP0810" FT /product="putative exported protein" FT /note="Similar to Variovorax paradoxus 2,4-diphenoxyacetic FT acid gene cluster TR:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta FT scores: E(): 9e-44, 42.415% id in 323 aa, and to FT Burkholderia cepacia hypothetical 35.5 kDa protein FT TR:AAK81675 (EMBL:AF029344) (337 aa) fasta scores: E(): FT 9e-44, 42.415% id in 323 aa" FT /db_xref="GOA:Q7VZS8" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VZS8" FT /protein_id="CAE41114.1" FT /translation="MADLFSVLRIAYTLALGAALAAPAAVAAPFPDRPVRLVVPYPPGG FT GADIFARTLSEPLAAQLGQPVIVENRPGANGIIGTDAVARAAPDGYTILLGNSGPNAIN FT QAIYPDLPYDAVDSFEEVSLIGYTTHVLVVHPGVQARSVTELIALARRSPGQLNFASTG FT QGGTPHLAGELFKLMTGTDMVHVPYKGASPSNADVIAGQVQLTFNTLPPLMTSIRAGKV FT RALAVTGKQRSQLLPEVPTIDEAGVAGYDVQTWYGIHAPAGTPAAVVDRLNQALVAVLS FT NAQVRAALVGQGYEVATSTPGEFSRMVRDDVAKWRKVVKEAKVKVD" FT misc_feature 140576..140656 FT /note="Signal peptide predicted for BP0810 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.996 between residues 27 and 28" FT misc_feature 140588..140656 FT /note="1 probable transmembrane helix predicted for BP0810 FT by TMHMM2.0 at aa 5-27" FT repeat_region 141571..142801 FT /note="Insertion sequence" FT CDS 141756..142772 FT /transl_table=11 FT /locus_tag="BP0812" FT /product="transposase for IS1663" FT /note="Similar to Neisseria meningitidis putative FT invertase/transposase nma1800 TR:Q9JTF3 (EMBL:AL162757) FT (318 aa) fasta scores: E(): 2e-17, 28.48% id in 316 aa and FT Acinetobacter spSE19. pilin inverting protein chnY FT TR:Q9F7E1 (EMBL:AF282240) (324 aa) fasta scores: E(): FT 8.2e-50, 47.516% id in 322 aa" FT /db_xref="GOA:Q7TTN4" FT /db_xref="InterPro:IPR003346" FT /db_xref="UniProtKB/TrEMBL:Q7TTN4" FT /protein_id="CAE41115.1" FT /translation="MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKCKTKVVVN FT TAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQAATALPQVRVSLVNPAQARDFAKA FT LALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELNRKE FT KSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQ FT AGNAILAVMHNRHIDSAQSLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAA FT LVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLCFGVLKNRIPYQPNYAMNG" FT misc_feature 142008..142295 FT /note="HMMPfam hit to PF01548, Transposase" FT misc_feature 142308..142640 FT /note="HMMPfam hit to PF02371, Transposase FT IS116/IS110/IS902 family" FT CDS complement(142969..143793) FT /transl_table=11 FT /locus_tag="BP0813" FT /product="probable short-chain dehydrogenase" FT /note="Similar to Rhizobium loti probable short-chain FT dehydrogenase/reductase Mlr0808 TR:Q98LZ5 (EMBL:AP002995) FT (259 aa) fasta scores: E(): 1.2e-30, 45.985% id in 274 aa, FT and to Rhizobium meliloti putative oxidoreductase protein FT Smc01157 TR:CAC41799 (EMBL:AL591783) (259 aa) fasta scores: FT E(): 2.3e-21, 41.791% id in 268 aa" FT /db_xref="GOA:Q7VZS7" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VZS7" FT /protein_id="CAE41116.1" FT /translation="MDLGIAGRWALVCGASKGLGYGCASALLQNGVNVVINARNDGVLQ FT DAASALRKDAENQARQSGGQAGKVIAVACDITTEPGRQAALEAPGGPGPDFDIVVTNAG FT GPPPGQYQDWDRDDWIKAIDANMLTPIALIKATVDGMQARGFGRIVNITSTAVKAPIST FT LGLSNGARSGLTGFIAGLARSEIAARGVTINNILPGRFDTDRLKSTMRVAAQACGQSIE FT ALREEQQLGIPAGRFGRPDEFGALCAFLCSVHAGYITGQNMLIDGGAYPGTY" FT misc_feature complement(142999..143091) FT /note="HMMPfam hit to PF00678," FT misc_feature complement(143182..143772) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT CDS complement(143871..144761) FT /transl_table=11 FT /locus_tag="BP0814" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Escherichia coli probable transcriptional FT regulator LrhA or GenR or B2289 SW:LRHA_ECOLI (P36771) (312 FT aa) fasta scores: E(): 3.9e-37, 36.396% id in 283 aa, and FT to Erwinia chrysanthemi pectinase gene transcriptional FT regulator PecT SW:PECT_ERWCH (P52662) (316 aa) fasta FT scores: E(): 3.5e-36, 36.704% id in 267 aa" FT /db_xref="GOA:Q7VZS6" FT /db_xref="HSSP:1IXC" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VZS6" FT /protein_id="CAE41117.1" FT /translation="MRHLDMQQLRTLVTIAQTGSFSATAEKLFKTQPAITHQMHQLEAT FT LGTALFEKQGRSRVLTEDGQKMLKYASQVLALNDEVFRVFQERLQGTLRIGSPHDAVET FT LLPSILRQASQALPQLNIDVCIDSAPRLFELLQRGEIDMAISARFHQEFEGLILKRSPV FT VWLCAADYVHRPDKALPLILADGSSIYREMALAALEQHHIRWTVTRIVPDLVGIKAAIR FT AGLGVTPRSIDLLAPDMRMLDEADGLPPLPEMTYHLWIRPHADDSPARQAYEMLRQAWE FT LVDAVPAARAGPAAG" FT misc_feature complement(144327..144746) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(144642..144707) FT /note="Predicted helix-turn-helix motif with score 1103 FT (+2.94 SD) at aa 19-40, sequence GSFSATAEKLFKTQPAITHQMH" FT CDS 144965..146116 FT /transl_table=11 FT /gene="metC" FT /locus_tag="BP0815" FT /product="cystathionine beta-lyase" FT /EC_number="4.4.1.8" FT /note="Similar to Escherichia coli cystathionine beta-lyase FT MetC or B3008 SW:METC_ECOLI (P06721) (395 aa) fasta scores: FT E(): 1.1e-56, 41.795% id in 390 aa, and to Rhizobium FT meliloti probable cystathionine beta-lyase protein FT TR:CAC46058 (EMBL:AL591787) (395 aa) fasta scores: E(): FT 2.6e-63, 46.073% id in 382 aa. Also similar to BP0112, FT 42.784% identity in 388 aa overlap." FT /db_xref="GOA:Q7VZS5" FT /db_xref="HSSP:1CL2" FT /db_xref="InterPro:IPR015422" FT /db_xref="UniProtKB/TrEMBL:Q7VZS5" FT /protein_id="CAE41118.1" FT /translation="MKFDTLLTHGGRDPKAHKGMVNTPVYRTSTVVFESMAEYKATRGA FT KFDHVRYGRLGTHTVKELENLVAAIEGGHRAVLTPSGVSAIATTLNTLARPGSHILVPD FT NVYYPCREFCEKVLAPRGVRVEYYAGSEVERLVRPDTSVVYCESPGSLTMEMQDFARIA FT AAAHAVGAKVVADNTWATPVFLQPFEHGIDVSIHAATKYLVGHSDVMMGTVTAHDPELW FT LAIRTEAAAQGLSISPDDAYLATRGIRTLGVRMAAHYRNALDVAQWLAGHPRVAQVLYP FT ALPQHPDHALWRRQMRGASGLLTLELEPCSLEQRDAFIDRLTLFAIGASWGGYESLVLP FT ADTAGKRSLAGRDYAGPLVRLHIGLEDVEDLKRDLDQALRRED" FT misc_feature 144974..146104 FT /note="HMMPfam hit to PF01053, Cys/Met metabolism FT PLP-dependent enzyme" FT misc_feature 145541..145585 FT /note="ScanRegExp hit to PS00868, Cys/Met metabolism FT enzymes pyridoxal-phosphate attachment site. Confirmed by FT InterPro eMOTIF pattern match." FT CDS 146120..147151 FT /transl_table=11 FT /locus_tag="BP0816" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti Mlr7142 protein TR:Q987A0 FT (EMBL:AP003011) (349 aa) fasta scores: E(): 2.1e-12, FT 26.901% id in 342 aa, and to Rhizobium meliloti FT hypothetical protein Smb20435 TR:CAC48821 (EMBL:AL603643) FT (331 aa) fasta scores: E(): 2.3e-12, 26.586% id in 331 aa" FT /db_xref="GOA:Q7VZS4" FT /db_xref="InterPro:IPR007036" FT /db_xref="UniProtKB/TrEMBL:Q7VZS4" FT /protein_id="CAE41119.1" FT /translation="MSKIQDLLSGMQPGTVAHDYLPVGTMSSGMAIAIPVTVIKGAAPG FT PCLWVNGQVHGNELNGVIAAVELGRRVDPAALSGSLVITPTANPLGLDNRTKTAPQDLQ FT DLDQTFPGNPQGMVTNHMAHALFQEVRAVASCLVNMHTMGSIHDSKPYCVYKVFPGSAV FT TEAQLLRMTSFFEPSVSCRMDVGGAGELPGNIAGGLDYQCLAIDVPAFMVELGQGSWYT FT PENVEQALTGLLRLASHLGLIDESGVSAGAPAPASVRRVTRRRWVMARHGGLFLAAGRA FT GQIVPAGAPLGRIVDLHGAEVEAVSLDTDCIVIGMRRDPVVHTGDRVAFVATQWDQADI FT GAG" FT CDS 147280..148251 FT /transl_table=11 FT /locus_tag="BP0817" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta FT scores: E(): 5.6e-32, 35.474% id in 327 aa, and to FT Agrobacterium tumefaciens Agr_l_312p TR::AAK88723 FT (EMBL:AE008213) (329 aa) fasta scores: E(): 6e-30, 33.739% FT id in 329 aa" FT /db_xref="GOA:Q7VZS3" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VZS3" FT /protein_id="CAE41120.1" FT /translation="MQHTLAKYLAAAVAVLPWTAGAQDKAAKPWQPDGPVTLILGYGAG FT GGHYALAQVLQARMAEELGQPLIVMPKPGAGGLIATDFVANARPDGRTITWSGPGVLTI FT WPQLRQISYDPKKLTPVNLLVQMGYMLVTKPGESRWNSVQDVIDGSKSGDVTYSSVGVG FT TSNSMTGHLLNAMTGSRLREIGYKGGGPALMSTMAGETDIGFGDTATHKLIAAGRLRAI FT ATTTRQREPRFPDVPTVAETVPGYEVTNWLGVIAPPGTPQPIVDRYQQIFAKLMAEPEI FT AKRVKELGMTPDVGTPQAFSELIDSETQLWKRLIRDQNIKVE" FT misc_feature 147280..147345 FT /note="Signal peptide predicted for BP0817 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.972) with cleavage site FT probability 0.938 between residues 22 and 23" FT CDS 148276..150360 FT /transl_table=11 FT /locus_tag="BP0818" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa probable FT thiosulfate sulfurtransferase Pa2603 TR:Q9I0N4 FT (EMBL:AE004689) (527 aa) fasta scores: E(): 1.4e-45, FT 40.310% id in 516 aa, and to Agrobacterium tumefaciens FT Agr_pti_bx104p TR:AAK91049 (EMBL:AE007935) (395 aa) fasta FT scores: E(): 9.6e-31, 41.987% id in 312 aa" FT /db_xref="InterPro:IPR001763" FT /db_xref="UniProtKB/TrEMBL:Q7VZS2" FT /protein_id="CAE41121.1" FT /translation="MTTMQQRYDAVKDAMAQIGRLAAQLDGEALREAIGPVLVALGERD FT ELFPRDEFPIRAGKPGGLYQLWRGESGDLALYASAGKTGKKQPPHDHTTWAVIAGVYGE FT EHNVFFERTDDGSRAGFGTLRQIDALTVVQGNAARLSGEVFHTIEVVSEEDSLHLHLYG FT RALDTLSGRINFATEEGGAYTRFMAVPETYAPWIAPRDLYEMLTDGGELAILDVRENGV FT YTQGHLFHAASMPLSVFELRVDDGLPSPHVRIVVIDDADGLAEQAVRLLHQRGYHNVAV FT LQGGQPGWNAAGLPVYTGVFVPSKAFGEVAEHVYGTPSISAVELDALRRSEEVLVLDSR FT TEQEFNLMSVPGAYSCPGAELVARALDHAGPIVVNCAGRTRSIIGAQSLRNAGKTDVRA FT LENGTMGQHLAGLPLERGKSASYLDRPVAAGAAQAAQAWALGMSIATLDAGELHDMLSN FT PYRTTYLFDARDPSCSSRATLPRAVAAPGGQLVQQTDYYAPVRNARIVVFDTDGVQAPM FT TAGWLHQMGWEVYLHRPEATALVAPPRVEYDDERGVPVEAVAADAVIIDVGDSRTYRAG FT HLAGAAWAPRSRLPALLAQRKPAGPLLFTCADGRVSRLAAADAAAQGYQAAYLKGGTAA FT LGADRLRGDAPQFLTEAIDVWYRPYDRETGIEEAMHQYLSWETGLLDKVRSDPTVAFRI FT " FT misc_feature 148867..149151 FT /note="HMMPfam hit to PF00581, Rhodanese-like domain" FT CDS complement(150427..151419) FT /transl_table=11 FT /locus_tag="BP0819" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta FT scores: E(): 4.4e-35, 37.037% id in 324 aa, and to FT Pseudomonas putida hypothetical 34.5 kDa protein in FT clcB-clcD intergenic region precursor SW:YCLC_PSEPU FT (Q47100) (329 aa) fasta scores: E(): 3.7e-32, 34.375% id in FT 320 aa" FT /db_xref="GOA:Q7VZS1" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VZS1" FT /protein_id="CAE41122.1" FT /translation="MNNQRRNALRVLTGLCGAAALPRLALAQAGAYPAGPVTVVVPYGS FT GGSTDVIARLLVNDVSERLGGKFIVENKPGAAGNIGTRQVGISRPDGTTLLYSTATPFC FT INPYVYRTLPFDPDKDFAAVSRTAKLPLVLVVNAGLGIKTPQAFIDYLRKNQQQCSYSS FT YGIGTSSHIASAIFTKKIGAPGVLHVPYKDMTAMSDLAAGRNTFHIDAWSVVDPLVRAG FT KLTALAVSSAEPLPWAPKLPTIASVIGSDYEVVTWHAVFAPRKTPAEIVQKLNHEFRQT FT IAKPSVQKTYVDQGFLTYPPATPAEIDAFVQQDKQRWKSFVEAAGITPS" FT misc_feature complement(151339..151419) FT /note="Signal peptide predicted for BP0819 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.879 between residues 27 and 28" FT CDS complement(151528..152862) FT /transl_table=11 FT /locus_tag="BP0820" FT /product="conserved hypothetical protein" FT /note="Similar to Agrobacterium tumefaciens Agr_l_1811p FT TR:AAK89479 (EMBL:AE008289) (440 aa) fasta scores: E(): FT 1.4e-42, 32.143% id in 448 aa, and to Rhizobium meliloti FT putative oxidoreductase Sma1850 TR:AAK65676 (EMBL:AE007288) FT (425 aa) fasta scores: E(): 2.5e-39, 33.724% id in 427 aa" FT /db_xref="GOA:Q7VZS0" FT /db_xref="InterPro:IPR003042" FT /db_xref="UniProtKB/TrEMBL:Q7VZS0" FT /protein_id="CAE41123.1" FT /translation="MAASRDIFAPDFRRRPYWWEGYEPPECGEDTLPASADVAIVGGGY FT TGVCCALALREAGIEAVVLEAGRPGEGASTRSGGQVSGGVNVQKKALAAVGESAGQRAE FT RLAARLRDAAASMAYVESLIERYAIECGWRRTGRLTTMWVPAHYQSWQARLDQLNACTG FT SQARMIPREELAAEIGSSVYHGAALIEHAGHLQPAQLYGGMLRAARDAGARVLGRTPVE FT RIERRAGGYDVHTARGTVRAGQVVIATIGYTGANLGGLKRRIVPVCTHMIATEALPPDL FT AASLLPTNRAVSESRRVVNHYRLSPDGRRLLFGGRARFVPTDEATTARLLYRAMLKRFP FT QLAGTRITHSWGGNVAMTLDSMPHIGGADGLHYALGCNGSGVAMMSYLGHCVGRKIATQ FT SGEPINAFDMGEIPGHPFYFGNPWFLFAIGSWYQARDAYDHWRAR" FT CDS complement(152888..154900) FT /transl_table=11 FT /gene="hyuB" FT /locus_tag="BP0821" FT /product="hydantoin utilization protein B" FT /note="Similar to Pseudomonas sp hydantoin utilization FT protein B HyuB SW:HYUB_PSESN (Q01263) (592 aa) fasta FT scores: E(): 4.3e-44, 29.223% id in 592 aa, and to FT Rhizobium loti hydantoin utilization protein B Mlr7025 FT TR:Q987J6 (EMBL:AP003010) (661 aa) fasta scores: E(): FT 5.8e-133, 52.108% id in 664 aa" FT /db_xref="GOA:Q7VZR9" FT /db_xref="InterPro:IPR003692" FT /db_xref="UniProtKB/TrEMBL:Q7VZR9" FT /protein_id="CAE41124.1" FT /translation="MTVDNFRLQVLANHCTAAAEAMGYTLMRTAYSTFVKETEDFSAQL FT MTPAGKTFASPKTFGATWYTGLDYGRVIAMFDDYREGDIYLTNDPYSGFVATHTPDMHV FT WKPVFRDGRLVCFVGSHIHNTDMGGAVPASLSRTLTEVHQEGLRIPPMLLARDGVIDEK FT VLRIMEVNVRMPEQNRGDLNAQIAALNVGERKVHEIIDRFGVDEFMQGAEAILDYAEQQ FT TRALIREIPDGEYRFAEYADEDTVGGYPCRIQITLRVRGDELELDFTGSDPQVASSLNV FT PTGGDGHHSVITVGLIYVMHTLAPRNVLNAGSVRPCRAVLPEGTVVNPQAPAAVGMRSL FT MAAVIQACTFGVFSRAMPDRLPACPAGGSTLLNVKTATREGRQVLSSIGPCGGGAGGGP FT EHDGVEGCGANNAFLKNTPVEINEAEVPIEIIRYGLVPDTGGAGRQRGGNAATMEFRLL FT APNGVVTARNRNRSELAAWGVMGGKAGANSRFIRNPDSDAPEELRNSDLVNCAPGDVIR FT LQGPAGGGYGHPYERPIEQVVEDVRCGFVSRQRAREAYGVAVRADLSVDEAATRELRRA FT DRGGQAHFDHGPGRSRFEAVWTPARYDAMTRIMAALPISWRHFVKHQMFAALAGSAPPQ FT DGGAQDIERLYAQLSQRYADLPSPQAIAAASGAAA" FT misc_feature complement(153281..154894) FT /note="HMMPfam hit to PF02538, Hydantoinase B/oxoprolinase" FT misc_feature complement(154379..154402) FT /note="ScanRegExp hit to PS00867, Carbamoyl-phosphate FT synthase subdomain signature 2." FT CDS complement(154897..156969) FT /transl_table=11 FT /gene="hyuA" FT /locus_tag="BP0822" FT /product="hydantoin utilization protein A" FT /note="Similar to Pseudomonas sp hydantoin utilization FT protein A hyuA SW:HYUA_PSESN (Q01262) (690 aa) fasta FT scores: E(): 1.3e-75, 34.776% id in 693 aa, and to FT Rhizobium loti hydantoin utilization protein A Mlr7024 FT TR:Q987J7 (EMBL:AP003010) (692 aa) fasta scores: E(): FT 8.9e-130, 53.254% id in 676 aa" FT /db_xref="GOA:Q7VZR8" FT /db_xref="InterPro:IPR008040" FT /db_xref="UniProtKB/TrEMBL:Q7VZR8" FT /protein_id="CAE41125.1" FT /translation="MRDIDGGTMGYRVGVDIGGSFTDFAVFDEDNGEIKSLKVFSRPDQ FT PGEEVIAGVRMLGERYGIQPEQITYFTHGTTVGINTVIQRKGLKLALFTTENFSDVLEL FT ARLKTPDMYHLLSRRPAPLVKRSMVFGIAERMGPDGTVRAPLDEASVERAVRQALDAGA FT EGIVVSLLHAYRNPAHELRVREIAEALAPGLPVSCSSETWPIIREYERTITAVIGGYVQ FT PRVAHYLTSLQQALKNAGVQPEPRLTKSNGGVMTAEQGKRDCVQMILSGTAAGVIGASH FT VAATAGLPRCLSLDIGGTSADIAVIVDGKPQYGVGELIGDFQIYIPSVSVSSVGEGGGS FT IAWVDPLGVLKVGPESAGSHPGPACYRRGGTRATITDAFVCCGLVGHSELGYQAVTVDA FT DASRQAVGELADRLGRGIEETAEAIIQIAVSGMYSEVSGLVSRYGIDPREYAVLAFGGA FT GPMLGCFLARELKVREIVVPPSPGTLSALGGLIADLKSDFLKTVYTDLSADRLAFVCDE FT FATLAGRARQWLAQEQGHAEEAELVYSAEMRYRGQSYEIDTVLDPIHIEAGDVQAVGQA FT FHDMHRRLYGHADEQAPVQIVSLRVVIAGNNDKPAFPRHALRPGAPRAERKVRVWLDGA FT WHEVPLYARTALAAGQQFTGPAIVTQDDCTTVIPPDYACRVDEYANLRITEGAAS" FT misc_feature complement(155290..156936) FT /note="HMMPfam hit to PF01968, Hydantoinase/oxoprolinase" FT CDS 157049..157696 FT /transl_table=11 FT /locus_tag="BP0823" FT /product="putative transcriptional regulator" FT /note="Similar to Pseudomonas putida pca regulon regulatory FT protein PcaR SW:PCAR_PSEPU (Q52154) (291 aa) fasta scores: FT E(): 6e-07, 31.655% id in 139 aa, and to Rhodococcus opacus FT PcaR TR:O67983 (EMBL:AF003947) (265 aa) fasta scores: E(): FT 3.5e-08, 28.108% id in 185 aa" FT /db_xref="GOA:Q7VZR7" FT /db_xref="InterPro:IPR005471" FT /db_xref="UniProtKB/TrEMBL:Q7VZR7" FT /protein_id="CAE41126.1" FT /translation="MNDNRSVQRCLALLRSFRSGPGQSLTALSKAVDLPHSTVLRFLTT FT LESEGYVRKEGTLWSLTPQLLEIGFAALANTGVNDVIQSALQELADQCAGTANIGERSK FT NDVIIIARASSEAERRKILVVNLRVGNALPPASALCSALDLPEDQWAIARYPERKVTTV FT GVALFSSQARGLSLGLSVNDDDYDMPRIEAEVLPRLRAQRDHIRRLMSLGEM" FT misc_feature 157115..157180 FT /note="Predicted helix-turn-helix motif with score 1102 FT (+2.94 SD) at aa 23-44, sequence QSLTALSKAVDLPHSTVLRFLT" FT CDS 157879..158331 FT /transl_table=11 FT /locus_tag="BP0824" FT /product="azurin" FT /note="Identical to the previously sequenced Bordetella FT bronchiseptica azurin SW:AZUR_BORBR (P00278) (129 aa) fasta FT scores: E(): 4.2e-49, 100.000% id in 129 aa,and similar to FT Alcaligenes xylosoxydans xylosoxydans azurin-I precursor FT Az1 TR:O87169 (EMBL:AB013077) (150 aa) fasta scores: E(): FT 4e-42, 74.667% id in 150 aa" FT /db_xref="GOA:P0A320" FT /db_xref="HSSP:1RKR" FT /db_xref="InterPro:IPR008972" FT /db_xref="UniProtKB/Swiss-Prot:P0A320" FT /protein_id="CAE41127.1" FT /translation="MFKQVLGGMALMAAFSAPVLAAECSVDIAGTDQMQFDKKAIEVSK FT SCKQFTVNLKHTGKLPRNVMGHNWVLTKTADMQAVEKDGIAAGLDNQYLKAGDTRVLAH FT TKVLGGGESDSVTFDVAKLAAGDDYTFFCSFPGHGALMKGTLKLVD" FT misc_feature 157879..157941 FT /note="Signal peptide predicted for BP0824 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 21 and 22" FT misc_feature 157942..158325 FT /note="HMMPfam hit to PF00127, Copper binding proteins, FT plastocyanin/azurin family" FT misc_feature 158254..158304 FT /note="ScanRegExp hit to PS00196, Type-1 copper (blue) FT proteins signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS complement(158375..159046) FT /transl_table=11 FT /locus_tag="BP0825" FT /product="conserved hypothetical protein" FT /note="Similar to Vibrio cholerae hypothetical protein FT Vc2666 TR:Q9KNR5 (EMBL:AE004332) (205 aa) fasta scores: FT E(): 2.1e-30, 43.781% id in 201 aa, and to Bacillus FT halodurans Bh3429 protein Bh3429 TR:Q9K7D5 (EMBL:AP001518) FT (215 aa) fasta scores: E(): 3.8e-14, 31.818% id in 198 aa" FT /db_xref="InterPro:IPR005149" FT /db_xref="UniProtKB/TrEMBL:Q7VZR6" FT /protein_id="CAE41128.1" FT /translation="MSDQSASVSTHWVPHQPAERILMTLKTRGPQGIAAIAEVLDVTAE FT AVRQQMARLQVEGLVDAETRSAGRGRPTQIWRLTQAGHARFPDMHAEMTVQMLGAVRQV FT FGESGIDKLIGAREASMRASYAEAMQGADGLRERLERLVAVRSREGYMAELVATDDGYL FT LVENHCPICAAAQACMAFCRSELDLFREIIGPQARVERAEHILAGARRCAYTVRPLRQA FT A" FT misc_feature complement(158891..158956) FT /note="Predicted helix-turn-helix motif with score 1118 FT (+2.99 SD) at aa 31-52, sequence QGIAAIAEVLDVTAEAVRQQMA" FT CDS complement(159061..160554) FT /transl_table=11 FT /locus_tag="BP0826" FT /product="outer membrane component of multidrug efflux FT system" FT /note="Similar to Pseudomonas aeruginosa mexE, mexF & oprN FT genes OprN TR:P95423 (EMBL:X99514) (472 aa) fasta scores: FT E(): 5e-47, 39.703% id in 471 aa, and to Xanthomonas FT maltophilia (Pseudomonas maltophilia) (Stenotrophomonas FT SmeC TR:Q9RBY7 (EMBL:AF173226) (471 aa) fasta scores: E(): FT 1.1e-31, 33.612% id in 479 aa" FT /db_xref="GOA:Q7VZR5" FT /db_xref="InterPro:IPR010131" FT /db_xref="UniProtKB/TrEMBL:Q7VZR5" FT /protein_id="CAE41129.1" FT /translation="MTHPVPTTFARTAGALLAALALAGCAVGPQYQAPTPAPVKLASPE FT QALFSADRLQREWWRQLQDARLDALIGLALARNLDIGLALARNLDIRQAQARLREARAA FT LDEKELDRWPTVTAAGGYTRSLSQINPGPDQRNLAQSYRAGFDATWEIDLFGRLQRRAE FT AAAARDQAAAADLAQTRLVVVAELARNYFEMRGAEQRLAVARANLATQQETLRVTAALV FT ETGRGYAGDLASARAELAGTRALLAPLETQRRLAQYHIAVLAAMRPAELGELRQEQPLA FT PLAAQLPIGDVAMLLQRRPDVRAAERLLAATNADVGAITAELYPRIDLGGFLGFIALRG FT GDLGQASSKAFALAPTISWPALHLGSVQAQLRAGQARHDAARARYEQVALQAIEEVEGA FT LTRYGQNQQRLRDLLDSATQSQRAADLAQTRYREGAAPYLTVLDAQRTLLRAQDAVAQS FT ESESYTSLVALYKALGGGWNTDAAAPARSARTAALPASP" FT misc_feature complement(159100..159693) FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein" FT misc_feature complement(159727..160326) FT /note="HMMPfam hit to PF02321, Outer membrane efflux FT protein" FT misc_feature complement(160459..160554) FT /note="Signal peptide predicted for BP0826 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.755 between residues 32 and 33" FT CDS complement(160551..163664) FT /transl_table=11 FT /locus_tag="BP0827" FT /product="integral membrane component of multidrug efflux FT system" FT /note="Similar to Pseudomonas aeruginosa probable Rnd FT efflux transporter Pa4207 TR:Q9HWH4 (EMBL:AE004837) (1029 FT aa) fasta scores: E(): 0, 69.697% id in 1023 aa, and to FT Vibrio cholerae multidrug resistance protein, putative FT Vc0164 TR:Q9KVI2 (EMBL:AE004106) (1036 aa) fasta scores: FT E(): 3.4e-183, 48.309% id in 1035 aa" FT /db_xref="GOA:Q7VZR4" FT /db_xref="HSSP:1IWG" FT /db_xref="InterPro:IPR001036" FT /db_xref="UniProtKB/TrEMBL:Q7VZR4" FT /protein_id="CAE41130.1" FT /translation="MTFTDLFVRRPVLALVVSTLILLLGLRATGELPVRQYPLTENTTI FT TITTQYPGASPELMQGFVTQPIAQAVATVENIDYLSSSSTQGRSLITVRMKLNADSNKA FT LTEIMAKVNQVKYRLPQEIYDPVLAKSSGEATSVAYVGFSSKTMPIPALTDYLQRVVLP FT QLSSIDGVASVDLYGGQTLAMRVWLDPARMAARGISAGEIAQALRDNNVQAAPGQTKGL FT YVVSNIQVNTDLNSLTDFRDMVVRQVDGAIVRLGDVGTVELGAASYDSSARMDGEKAVY FT FGLNATPVGNPLTIVERINALLPGIKQNLPPGVEVQVPFELARFINASIDEVRNTQLEA FT VLIVVAVIFLCLGSLRAVLVPVVTIPLSMLGAAAIMLSLGFSINLLTLLAMVLAIGLVV FT DDAIVVVENVHRHIEEGKSPVHAALVGAREVAGPVIAMTLTLAAVYAPIGLMGGLTGSL FT FKEFAFTLAAAVGVSGVIALTLSPVMSSFLLNSRVSEGWMARKAEHFFQRLGDAYGRVL FT DVSLRHRWVTGLIAVVVLANLPVLYGSAQRELAPAEDQAMILTAVKSPQHANIDYVEKF FT GQKWDTVMQEIPEQNGRWLINGSDGVANSIGGVNLVTWQARKRSADEIQGDLQNRVNAI FT EGSNTFAFQLPSLPGSTGGLPVQMVLMSAADYRVVYDAMETLKHAARASGLFMVVDSDL FT DYNNPVVRVDIDRAKANSLGVTMKAIGDTLAVLVGENYVNRFGMDGRSYDVIPQSPRGM FT RLTPQSLGQFYVKSASGAQVPLATLVKISMGVEPNRLTQFDQLNSATFQAIPMPGVTMG FT DAMQFLTEQARLLPPGFSHDWQSDARQYSQEGSALVVTFLFAIIVIYLVLAAQYESLRD FT PLIILVSVPMSICGALIPLALGMATINIYTQIGLVTLIGLISKHGILMVEFANEMQAHA FT GLDRRAAMERAARIRLRPILMTTAAMVVGLVPLLFASGAGAHSRFSLGLVIVVGMLVGT FT LFTLFVLPTMYTLLARDHRAAGQSARARELARLDAQAGAASPAHETAS" FT misc_feature complement(160653..163658) FT /note="HMMPfam hit to PF00873, AcrB/AcrD/AcrF family" FT misc_feature complement(join(160656..160721,160767..160832, FT 160980..161045,161076..161132,162198..162263, FT 162309..162374,162474..162539,162585..162650)) FT /note="8 probable transmembrane helices predicted for FT BP0827 by TMHMM2.0 at aa 338-360, 375-397, 430-452, FT 467-489, 844-863, 873-895, 944-966 and 981-1003" FT misc_feature complement(163575..163664) FT /note="Signal peptide predicted for BP0827 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.857) with cleavage site FT probability 0.695 between residues 30 and 31" FT CDS complement(163677..164783) FT /transl_table=11 FT /locus_tag="BP0828" FT /product="probable HlyD-family secretion protein" FT /note="Similar to Pseudomonas aeruginosa probable Rnd FT efflux membrane fusion protein precursor Pa4206 TR:Q9HWH5 FT (EMBL:AE004837) (370 aa) fasta scores: E(): 4.6e-48, FT 48.011% id in 352 aa, and to Vibrio cholerae hypothetical FT protein Vc0165 TR:Q9KVI1 (EMBL:AE004106) (368 aa) fasta FT scores: E(): 1.7e-30, 36.593% id in 317 aa" FT /db_xref="GOA:Q7VZR3" FT /db_xref="InterPro:IPR006143" FT /db_xref="UniProtKB/TrEMBL:Q7VZR3" FT /protein_id="CAE41131.1" FT /translation="MKSKKGTLAAGIVAAVAIAGGAWLYLRDAGSAPAWTMAPVKVAAA FT PAALGPLPVTLAGIGTLQASRQVVIPAEVDGRIARIAFESGQAVRAGQVLAQLNDAPEQ FT GDLARLQAQLRNARSVLERTRRLVPQQAATAEQLDQARAAYDQAAGEVRRVQALVEQKQ FT VKAPFDGVLGVRRVDLGQFVRAGEPVVSLTDARTMYADITLPEQALRDIRTGQAVSVGV FT DAYPGRAFDGVVSTIEPQVSAQARTLLVCATLPNPDGVLAPGMYVNARVALPERPGVIT FT VPETAVSYSAYGDSVYVVDDTVRPATVRQVFLKTAERVDSRIVVTEGLQAGQRVVTSGQ FT LRLHNGAAVEVFGQDTLAAGGGTALASH" FT misc_feature complement(163773..164588) FT /note="HMMPfam hit to PF00529, HlyD family secretion FT protein" FT misc_feature complement(164706..164762) FT /note="1 probable transmembrane helix predicted for BP0828 FT by TMHMM2.0 at aa 7-26" FT misc_feature complement(164727..164783) FT /note="Signal peptide predicted for BP0828 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.438 between residues 19 and 20" FT CDS complement(164907..165575) FT /transl_table=11 FT /locus_tag="BP0829" FT /product="putative transcriptional regulator" FT /note="Similar to Streptomyces lipmanii StgU TR:O88133 FT (EMBL:AJ006517) (210 aa) fasta scores: E(): 7.2e-21, FT 41.743% id in 218 aa, and to Streptomyces coelicolor FT hypothetical 23.3 kDa protein Sc2h4.05 TR:O86588 FT (EMBL:AL031514) (216 aa) fasta scores: E(): 1.1e-19, FT 39.524% id in 210 aa" FT /db_xref="InterPro:IPR002577" FT /db_xref="UniProtKB/TrEMBL:Q7VZR2" FT /protein_id="CAE41132.1" FT /translation="MAGKRSYEDGCAGAHALDLVGERWALLVVRELLLGPKRFTDLRKG FT LPGISPNVLTQRLTELEAVAVLRRRKLDPPAGAWVYELTDWGRELEPVILQLGKWGARS FT PALPREAGLSVDSLVLSFRAMFDPRAAARLTATYELVLNGQHFWARVENGQIALLRGRP FT PARPDATIEASPNALAALVYDDGDLDAAVAAEQLRYSGPRAGIARFLGLFTLPEPAAQD FT " FT misc_feature complement(165252..165521) FT /note="HMMPfam hit to PF01638, Protein of unknown function FT DUF24" FT repeat_region 165694..165725 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 165694..166746 FT CDS 165796..166746 FT /transl_table=11 FT /locus_tag="BP0830" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q84CT8" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q84CT8" FT /protein_id="CAE41133.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT misc_feature 166054..166119 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 166177..166710 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(166715..166746) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 166829..168787 FT /transl_table=11 FT /gene="betT" FT /locus_tag="BP0831" FT /product="high-affinity choline transport protein" FT /note="Similar to Escherichia coli high-affinity choline FT transport protein BetT or B0314 or Z0401 or Ecs0360 FT SW:BETT_ECOLI (P17447) (677 aa) fasta scores: E(): 2.1e-92, FT 42.249% id in 658 aa, and to Pseudomonas aeruginosa FT probable choline transporter Pa5291 TR:Q9HTR3 FT (EMBL:AE004941) (661 aa) fasta scores: E(): 2.5e-188, FT 74.732% id in 653 aa. Also similar to BP0804, 37.348% FT identity (38.522% ungapped) in 656 aa overlap." FT /db_xref="GOA:Q7VZR1" FT /db_xref="InterPro:IPR018093" FT /db_xref="UniProtKB/TrEMBL:Q7VZR1" FT /protein_id="CAE41134.1" FT /translation="MQNELKPTINKPVFLTSALFILLLVVFTIAAPATAQDFFNVIQAW FT ILGNASWFYILTVAIILLAVIFVAVSRYGNIKLGPDHSEPDYRDITWFAMLFSTGMGIG FT LMFFGVAEPVMHFIDPPVGEGGTALAAREAMKITFFHWGLHAWAIYASVALVLAFFCFR FT HGLPLTLRSALYPLIGERIYGPIGHAVDIFAIIGTVFGVATSLGLGVAQINSGLNHLFG FT VPVGIPTQIILIVISCGLATISVASGLDRGIRILSETNLLLAVVLLLFVLVLGPTVFLL FT QTFVQNTGAYLSDIVNKTFNLYAYEPTDWIGGWTLFYWGWWIAWSPFVGLFIARISRGR FT TIRQFVGGVLLVPAGFTLFWMTVFGDAAIHAILVEGMGSLAETVKADSSLALFAFLEHL FT PWGSVTSVVAIVMVVVFFVTSADSGALVVDQLASGGAESTPVWQRIFWSTLMGVVAIAL FT LLADGLQALQTATIASALPFSIILLLALWGLFKALRLDATKRSLLHRTITRTQPVRGQN FT WEHRLRNIVMMPRRAHVLRFISDVVRPAMDDVAEALRKEAYEAQVVDGEEGEVRLEVSH FT GVYLDFSYAVYPRSEVRPSLTPQEANDEEERRYFRAEVHLREGGQDYDIMGWTRDEVIG FT DILDQYERHRHYLHVVH" FT misc_feature 166829..166933 FT /note="Signal peptide predicted for BP0831 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.985 between residues 35 and 36" FT misc_feature join(166865..166933,166976..167035,167096..167164, FT 167264..167332,167393..167461,167504..167572, FT 167609..167677,167756..167824,167861..167920, FT 168023..168091,168161..168229,168239..168298) FT /note="12 probable transmembrane helices predicted for FT BP0831 by TMHMM2.0 at aa 13-35, 50-69, 90-112, 146-168, FT 189-211, 226-248, 261-283, 310-332, 345-364, 399-421, FT 445-467 and 471-490" FT misc_feature 166865..168316 FT /note="HMMPfam hit to PF02028, BCCT family transporter" FT misc_feature 167765..167794 FT /note="ScanRegExp hit to PS01303, BCCT family of FT transporters signature. Confirmed by InterPro eMOTIF FT pattern match." FT CDS 168815..169516 FT /transl_table=11 FT /locus_tag="BP0832" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Yersinia pestis hypothetical FT transcriptional regulator TR:Q9ZC44 (EMBL:AL031866) (320 FT aa) fasta scores: E(): 3.9e-39, 54.091% id in 220 aa, and FT to Rhizobium meliloti putative LysR-type regulator Sma0498 FT TR:AAK64920 (EMBL:AE007219) (299 aa) fasta scores: E(): FT 2.7e-13, 31.364% id in 220 aa" FT /db_xref="GOA:Q7VZR0" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VZR0" FT /protein_id="CAE41135.1" FT /translation="MTLKQLEAFYWAATCASFAVAADRLHLSLSSLSKRIAELESALGL FT DLFDRSGHRAVLTAAGERLLPQARDLLASADRIRASLRAEPELGVRCRFGVGELSALTW FT LPRLIGRVRGRYPGLALEPYVDVGQVLKRKVAEGELDFAVVAGASSHSAIASAPVGQAH FT FAWVAAPSVAGAAQSLTPQLLAGTALVSLPDGAGTTRLLDPWLAGGAPAGPRLAGCPER FT ALRGTPRLRYL" FT misc_feature 168815..168877 FT /note="Signal peptide predicted for BP0832 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.941) with cleavage site FT probability 0.836 between residues 21 and 22" FT misc_feature 168821..169246 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 168860..168925 FT /note="Predicted helix-turn-helix motif with score 1212 FT (+3.31 SD) at aa 16-37, sequence ASFAVAADRLHLSLSSLSKRIA" FT misc_feature 168863..168955 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS join(169521..169649,169648..170478) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0833" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 43. The frameshift occurs within a FT polymeric tract of (CG)3. The sequence has been checked and FT believed to be correct. Similar to Rhizobium loti Mll8080 FT protein Mll8080 TR:Q984B1 (EMBL:AP003013) (285 aa) fasta FT scores: E(): 6.4e-18, 31.950% id in 241 aa, and to FT Agrobacterium tumefaciens Agr_c_1840p TR:AAK86810 FT (EMBL:AE008031) (325 aa) fasta scores: E(): 1.8e-12, FT 26.299% id in 308 aa" FT /db_xref="PSEUDO:CAE41136.1" FT variation 169648..169653 FT /note="(CG)3 in pertussis; (CG)4 in parapertussis and FT bronchiseptica" FT CDS 170475..171290 FT /transl_table=11 FT /locus_tag="BP0834" FT /product="probable DNA repair exonuclease" FT /note="Similar to Rhizobium loti 3',5'-cyclic-nucleotide FT phosphodiesterase CpdA homolog Mll9676 TR:Q98NZ2 FT (EMBL:AP003017) (269 aa) fasta scores: E(): 2.2e-26, FT 35.659% id in 258 aa, and to Caulobacter crescentus FT hypothetical protein Cc3556 TR:Q9A2K5 (EMBL:AE006014) (262 FT aa) fasta scores: E(): 5.4e-20, 35.484% id in 248 aa" FT /db_xref="GOA:Q7VZQ9" FT /db_xref="InterPro:IPR004843" FT /db_xref="UniProtKB/TrEMBL:Q7VZQ9" FT /protein_id="CAE41137.1" FT /translation="MMRVLHISDTHFGTEREPVVHALHALADTLRPDLVVLGGDITQRA FT RRGQFAAARRFIQALQRPVLAVPGNHDIPLFNLAARLFDPYGNYRRALGAVLEPVYEDD FT RLLAIGVNSTRAARRKNGEVSRTQAQRVAQRLRDARPGQLRVVALHHPVHAMVESDQRN FT LLIGREFAVPAWVDAGVDLILGGHIHLPYVAPLHGKAGEAGRRAWTVQAGTAVSRRVRG FT RVPNSVNLIDYAAQADSPACTVQRWDFQTDSGAFVLFGQQVLALNRARG" FT misc_feature 170478..171167 FT /note="HMMPfam hit to PF02549, DNA repair exonuclease" FT CDS 171307..172110 FT /transl_table=11 FT /locus_tag="BP0835" FT /product="putative membrane protein" FT /note="Similar to Bacillus megaterium hypothetical 24.9 kDa FT protein in cytochrome p450meg gene 3'region TR:Q06074 FT (EMBL:Z21972) (216 aa) fasta scores: E(): 9.7e-13, 31.658% FT id in 199 aa, and to Caulobacter crescentus Pap2 FT superfamily protein Cc3019 TR:Q9A424 (EMBL:AE005965) (259 FT aa) fasta scores: E(): 1.3e-10, 36.134% id in 238 aa" FT /db_xref="GOA:Q7VZQ8" FT /db_xref="InterPro:IPR016118" FT /db_xref="UniProtKB/TrEMBL:Q7VZQ8" FT /protein_id="CAE41138.1" FT /translation="MPLFVNLLADVSSIDPMESYAVWIAAHPIIIFVAAPVLAAAGALL FT LWQLVAGLPAGRRRTMVFAVLALVAVGVFGALAASVEHQGGMVAFDQALARALGLSMPA FT ALLWVLSWFTHLGDRTLLTLVAVGMTLTLLWRRRWVLAGACVAATGGAGALNWLLKRAF FT QRVRPDHLHGYTLADGWSFPSGHASASMAVYGIACYLMLRTLPARWRSSALAGVAALIV FT AIGVSRVLLQVHFLSDVVAGFAITAAWLALCVAVTEWALRVNARA" FT misc_feature join(171379..171447,171484..171543,171586..171654, FT 171715..171783,171841..171909,171943..172011, FT 172021..172089) FT /note="7 probable transmembrane helices predicted for FT BP0835 by TMHMM2.0 at aa 25-47, 60-79, 94-116, 137-159, FT 179-201, 213-235 and 239-261" FT misc_feature 171634..172092 FT /note="HMMPfam hit to PF01569, PAP2 superfamily" FT CDS complement(172094..172528) FT /transl_table=11 FT /locus_tag="BP0836" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti putative FT oxidoreductase protein Smc01572 TR:CAC46902 (EMBL:AL591790) FT (155 aa) fasta scores: E(): 0.00047, 32.593% id in 135 aa, FT and to Rhizobium loti probable oxidoreductase Mlr0254 FT TR:Q98N82 (EMBL:AP002994) (305 aa) fasta scores: E(): FT 0.016, 30.075% id in 133 aa" FT /db_xref="GOA:Q7VZQ7" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VZQ7" FT /protein_id="CAE41139.1" FT /translation="MTREITIIGLGATGSQAAHALLHAAPDVSLTLYDRQPLRCEPFRG FT QATLAASAAEALRESAVIVLALTDEREIDRTLERFSDGKVGVDLQGKRVLDLCPSPPDW FT VRALGAAVSEAGADYRHADPREVAGERAGPQALLRLMLAR" FT misc_feature complement(172469..172528) FT /note="Signal peptide predicted for BP0836 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.916) with cleavage site FT probability 0.715 between residues 20 and 21" FT CDS complement(172525..172959) FT /transl_table=11 FT /locus_tag="BP0837" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4093 TR:Q9HWT5 (EMBL:AE004825) (138 aa) fasta FT scores: E(): 1.2e-09, 40.164% id in 122 aa, and to FT Rhizobium meliloti hypothetical transmembrane protein FT Smc01805 TR:CAC45823 (EMBL:AL591786) (143 aa) fasta scores: FT E(): 3e-08, 34.815% id in 135 aa" FT /db_xref="InterPro:IPR006683" FT /db_xref="UniProtKB/TrEMBL:Q7VZQ6" FT /protein_id="CAE41140.1" FT /translation="MNIPAAEPRARMTLAEFHRLLADQHPFAQVLGIDVVDIGHGTARA FT VLPARDTHQRLGGIVAGPMLMGLADLTMYAAVVGATGQAGAVTANLTIHFLRKTSGAAV FT IADARVLKTGRLAMAEAILRCDGADEPVAHVVSAWAVPAP" FT CDS complement(172961..173539) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0838" FT /product="probable TetR-family transcriptional regulator FT (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. The insertion occurred near the FT N-terminus. Similar to Aquifex aeolicus transcriptional FT regulator Acrr2 or Aq_2179 TR:O67927 (EMBL:AE000776) (192 FT aa) fasta scores: E(): 3.3e-05, 32.479% id in 117 aa, and FT to Caulobacter crescentus transcriptional regulator, TetR FT family Cc3123 TR:Q9A3S9 (EMBL:AE005976) (202 aa) fasta FT scores: E(): 0.00016, 31.206% id in 141 aa" FT misc_feature complement(173372..173512) FT /note="HMMPfam hit to PF00440, Bacterial regulatory FT proteins, tetR family" FT misc_feature complement(173399..173464) FT /note="Predicted helix-turn-helix motif with score 1613 FT (+4.68 SD) at aa 18-39, sequence TTIRAIAKEADCTTGAIYPWFD" FT CDS complement(173533..174483) FT /transl_table=11 FT /locus_tag="BP0839" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE41142.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 173533..173564 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(173533..173953) FT misc_feature complement(173569..174102) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(173952..174585) FT misc_feature complement(174160..174225) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT CDS 174796..175953 FT /transl_table=11 FT /locus_tag="BP0840" FT /product="outer membrane porin protein precursor" FT /note="Identical to the previously sequenced Bordetella FT pertussis outer membrane porin protein precursor FT SW:OMP_BORPE (Q04064) (385 aa) fasta scores: E(): 4e-149, FT 100.000% id in 385 aa. Also similar to BP2851 (53.728%% FT identity in 389 aa overlap), and BP0267 (58.844% identity FT in 294 aa overlap), and its C-terminus is similar to BP0138 FT (66.667% identity in 90 aa overlap)." FT /db_xref="GOA:Q04064" FT /db_xref="HSSP:1E54" FT /db_xref="InterPro:IPR002299" FT /db_xref="UniProtKB/Swiss-Prot:Q04064" FT /protein_id="CAE41143.1" FT /translation="MKKTLLAAALLAGFAGAAQAETSVTLYGIIDTGIGYNDVDFKVKG FT ANADDSDFKYNHSRFGMINGVQNGSRWGLRGTEDLGDGLQAVFQLESGFNSGNGNSAQD FT GRLFGRQATIGLQSESWGRLDFGRQTNIASKYFGSIDPFGAGFGQANIGMGMSAMNTVR FT YDNMVMYQTPSYSGFQFGIGYSFSANDKDADAVNRVGFATADNVRAITTGLRYVNGPLN FT VALSYDQLNASNNQAQGEVDATPRSYGLGGSYDFEVVKLALAYARTTDGWFGGQGYPVA FT VTLPSGDKFGGFGVNTFADGFKANSYMVGLSAPIGGASNVFGSWQMVDPKLTGGDEKMN FT VFSLGYTYDLSKRTNLYAYGSYAKNFAFLEDAKSTAVGVGIRHRF" FT misc_feature 174796..174855 FT /note="Signal peptide predicted for BP0840 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.997 between residues 20 and 21" FT misc_feature 174985..175179 FT /note="HMMPfam hit to PF00267, Gram-negative porin" FT misc_feature 175294..175341 FT /note="ScanRegExp hit to PS00225, Crystallins beta and FT gamma 'Greek key' motif signature." FT misc_feature 175795..175950 FT /note="HMMPfam hit to PF00267, Gram-negative porin" FT CDS 176142..176501 FT /transl_table=11 FT /gene="nuoA" FT /locus_tag="BP0841" FT /product="probable NADH-ubiquinone oxidoreductase chain 3" FT /note="Similar to Paracoccus denitrificans NADH-ubiquinone FT oxidoreductase chain 7 Nqo7 SW:NQO7_PARDE (P29919) (121 aa) FT fasta scores: E(): 5e-28, 60.345% id in 116 aa, and to FT Rhodobacter capsulatus NADH dehydrogenase I chain A NuoA FT SW:NUOA_RHOCA (O84969) (126 aa) fasta scores: E(): 1.1e-28, FT 60.345% id in 116 aa" FT /db_xref="GOA:Q7VZQ5" FT /db_xref="InterPro:IPR000440" FT /db_xref="UniProtKB/TrEMBL:Q7VZQ5" FT /protein_id="CAE41144.1" FT /translation="MNLHPYFPVLLFILVATLIGFALLTAGSLLGPRRPYAEKLSPYEC FT GFEAFEDARMKFDVRYYLVAILFILFDLEIAFLFPWAIAQGTVGLVGFWTVMVFLAVLT FT VGFIYEWKKGALDWE" FT misc_feature 176142..176216 FT /note="Signal peptide predicted for BP0841 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.970) with cleavage site FT probability 0.396 between residues 25 and 26" FT misc_feature join(176169..176237,176322..176390,176400..176468) FT /note="3 probable transmembrane helices predicted for FT BP0841 by TMHMM2.0 at aa 10-32, 61-83 and 87-109" FT misc_feature 176253..176495 FT /note="HMMPfam hit to PF00507, FT NADH-ubiquinone/plastoquinone oxidoreductase, chain 3" FT CDS 176538..177014 FT /transl_table=11 FT /gene="nuoB" FT /locus_tag="BP0842" FT /product="NADH-ubiquinone oxidoreductase, 20 kDa subunit" FT /EC_number="1.6.5.3" FT /note="Similar to Arabidopsis thaliana NADH-ubiquinone FT oxidoreductase 20 kDa subunit, mitochondrial precursor FT T22p22_160 SW:NUKM_ARATH (Q42577) (218 aa) fasta scores: FT E(): 4e-51, 85.714% id in 140 aa, and to Neisseria FT meningitidis NADH dehydrogenase I, B subunit Nmb0242 FT TR:Q9K1C2 (EMBL:AE002381) (160 aa) fasta scores: E(): FT 1e-53, 81.646% id in 158 aa" FT /db_xref="GOA:Q7VZQ4" FT /db_xref="InterPro:IPR014406" FT /db_xref="UniProtKB/Swiss-Prot:Q7VZQ4" FT /protein_id="CAE41145.1" FT /translation="MAIDGILKQGFITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHA FT GAARYDLDQFGIIFRPSPRQSDLMIVAGTLCNKMGPALRKVYDQMPEPRWVVSMGSCAN FT GGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGLLQMQNKIRLTNTIAR" FT misc_feature 176655..176978 FT /note="HMMPfam hit to PF01058, NADH ubiquinone FT oxidoreductase, 20 Kd subunit" FT misc_feature 176889..176939 FT /note="ScanRegExp hit to PS01150, Respiratory-chain NADH FT dehydrogenase 20 Kd subunit signature. Confirmed by FT InterPro eMOTIF pattern match." FT CDS 177089..177712 FT /transl_table=11 FT /gene="nuoC" FT /locus_tag="BP0843" FT /product="respiratory-chain NADH dehydrogenase, 30 kDa FT subunit" FT /EC_number="1.6.5.3" FT /note="Similar to Neurospora crassa NADH-ubiquinone FT oxidoreductase 30.4 kDa subunit, mitochondrial precursor FT Nuo-31 SW:NUGM_NEUCR (P23710) (283 aa) fasta scores: E(): FT 5.9e-22, 41.250% id in 160 aa, and to Neisseria FT meningitidis NADH dehydrogenase I chain C NuoC or Nmb0243 FT SW:NUOC_NEIMB (Q9K1C1) (197 aa) fasta scores: E(): 4.8e-43, FT 55.172% id in 203 aa" FT /db_xref="GOA:Q7VZQ3" FT /db_xref="InterPro:IPR020396" FT /db_xref="UniProtKB/Swiss-Prot:Q7VZQ3" FT /protein_id="CAE41146.1" FT /translation="MMMTRLETLKNNLQAAFGQDLALTESLGELTLEVAAEQWFSACTK FT LRTDPALRFESCIDLCGVDYLTWGNGTQPEEKTGPVTRGRYAVVVHLLSIEHNWRLRVR FT TWAPDDEFPMVSSLLECWPGVNWFEREAFDLYGIVFEGHPDLRRILTDYGFIGHPFRKD FT FPLSGTVEMRYDPEQKRVIYQPVTIDPREITPRVVREDSYGMGR" FT misc_feature 177395..177604 FT /note="HMMPfam hit to PF00329, Respiratory-chain NADH FT dehydrogenase, 30 Kd subunit" FT misc_feature 177473..177538 FT /note="ScanRegExp hit to PS00542, Respiratory chain NADH FT dehydrogenase 30 Kd subunit signature." FT CDS 177715..178971 FT /transl_table=11 FT /gene="nuoD" FT /locus_tag="BP0844" FT /product="respiratory-chain NADH dehydrogenase, 49 kDa FT subunit" FT /EC_number="1.6.5.3" FT /note="Similar to Paracoccus denitrificans NADH-ubiquinone FT oxidoreductase chain 4 Nqo4 SW:NQO4_PARDE (P29916) (412 aa) FT fasta scores: E(): 1.6e-56, 59.277% id in 415 aa, and to FT Neisseria meningitidis NADH dehydrogenase I chain D NuoD or FT Nma0016 TR:Q9JX81 (EMBL:AL162752) (418 aa) fasta scores: FT E(): 1.1e-134, 74.760% id in 416 aa" FT /db_xref="GOA:Q7VZQ2" FT /db_xref="InterPro:IPR001135" FT /db_xref="UniProtKB/Swiss-Prot:Q7VZQ2" FT /protein_id="CAE41147.1" FT /translation="MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHR FT ATEKLAEHKTFIQALPYMDRLDYVSMMCNEHAYVMAIEKLLGIEAPLRAQYIRVMFDEI FT TRVLNHLMSLGSHALDVGAMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDL FT PDTMPQYGDSSKYRGEKEVRAMNDARSGSLLDFIEDFTNRFPSCVDEYETLLTDNRIWK FT QRLVGIGVVDPDRAKALGFTGPMLRGSGVAWDLRKTQPYEVYDLMDFDVPVGVNGDCYD FT RYLVRVAEMRESNRIIRQCVEWLRNNPGPVMIENHKIAPPSRTAMKSNMEELIHHFKLF FT SEGFHVPPGEAYAAVEHPKGEFGIYLVADGANKPYRLKIRAPGFAHLQSLDEMARGHMI FT ADAVTIIGTQDIVFGEIDR" FT misc_feature 177841..177876 FT /note="ScanRegExp hit to PS00535, Respiratory chain NADH FT dehydrogenase 49 Kd subunit signature." FT misc_feature 178072..178206 FT /note="HMMPfam hit to PF00346, Respiratory-chain NADH FT dehydrogenase, 49 Kd subunit" FT misc_feature 178291..178968 FT /note="HMMPfam hit to PF00346, Respiratory-chain NADH FT dehydrogenase, 49 Kd subunit" FT CDS 179017..179511 FT /transl_table=11 FT /gene="nuoE" FT /locus_tag="BP0845" FT /product="respiratory-chain NADH dehydrogenase I, 24 kDa FT subunit" FT /EC_number="1.6.5.3" FT /note="Similar to Rattus norvegicus NADH-ubiquinone FT oxidoreductase 24 kDa subunit precursor NdufV2 SW:NUHM_RAT FT (P19234) (241 aa) fasta scores: E(): 3.8e-22, 39.490% id in FT 157 aa, and to Neisseria meningitidis NADH dehydrogenase I, FT E subunit Nmb0245 TR:Q9K1B9 (EMBL:AE002381) (157 aa) fasta FT scores: E(): 8.2e-37, 62.000% id in 150 aa" FT /db_xref="GOA:Q7VZQ1" FT /db_xref="InterPro:IPR002023" FT /db_xref="UniProtKB/TrEMBL:Q7VZQ1" FT /protein_id="CAE41148.1" FT /translation="MLLSEQAYKKIDRELAKFPADQRQSAIMASLAIAQEEKGWLPAEI FT LEDVANYIGVPPIAVQEVATFYNMFDVKPVGTHKIAVCTNLPCALRDGEKAADYLKRKL FT GVDFRETTADGRFTLIEGECMGACGDSPVLIVNNKHMCVRMTEEKLDALVDGLKSQGES FT A" FT misc_feature 179017..179490 FT /note="HMMPfam hit to PF01257, Respiratory-chain NADH FT dehydrogenase 24 Kd subunit" FT CDS 179508..180875 FT /transl_table=11 FT /gene="nuoF" FT /locus_tag="BP0846" FT /product="respiratory-chain NADH dehydrogenase, 51 kDa FT subunit" FT /EC_number="1.6.5.3" FT /note="Similar to Rhizobium meliloti NADH dehydrogenase I FT chain F 2 NuoF2 SW:NUF2_RHIME (P56913) (421 aa) fasta FT scores: E(): 3.8e-86, 52.518% id in 417 aa, and to FT Neisseria meningitidis NADH dehydrogenase I chain F NuoF or FT Nma0014 TR:Q9JX83 (EMBL:AL162752) (433 aa) fasta scores: FT E(): 2.7e-133, 77.240% id in 413 aa" FT /db_xref="GOA:Q7VZQ0" FT /db_xref="InterPro:IPR019575" FT /db_xref="UniProtKB/TrEMBL:Q7VZQ0" FT /protein_id="CAE41149.1" FT /translation="MNAPDLYKRLAQGLDPNPLNDLSISMCLHGRHIAPQIMADVDGEN FT WRLQEYVKRGGYEALRKILTTGMTPEDVIAEVKASGLRGRGGAGFPTGLKWSFMPRAFP FT GQKYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGISVGYNYIHGEIFEVYE FT RFEEALEEARAAGFLGDKLLGSDFSFQLHAFHGYGAYICGEETALLESLEGKKGQPRFK FT PPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEVGKPNNGGTKLFSISGDVERP FT GNYEIPMGTPFSKLLELAGGMRGGRKLKAVIPGGSSAPVLPADIMMDCTMDYDAIAKAG FT SMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRIENGQGR FT PEDLDMLDSVAGNIMGRTICALGDAAAMPVRSFIKHFRDEFAHHIEHKSCVVPQYL" FT misc_feature 179622..180479 FT /note="HMMPfam hit to PF01512, Respiratory-chain NADH FT dehydrogenase 51 Kd subunit" FT misc_feature 180618..180653 FT /note="ScanRegExp hit to PS00645, Respiratory-chain NADH FT dehydrogenase 51 Kd subunit signature 2. Confirmed by FT InterPro eMOTIF pattern match." FT CDS 180891..183218 FT /transl_table=11 FT /gene="nuoG" FT /locus_tag="BP0847" FT /product="NADH-ubiquinone oxidoreductase, 75 kDa subunit" FT /EC_number="1.6.5.3" FT /note="Similar to Solanum tuberosum NADH-ubiquinone FT oxidoreductase 75 kDa subunit, mitochondrial precursor FT SW:NUAM_SOLTU (Q43644) (738 aa) fasta scores: E(): 2.2e-59, FT 36.006% id in 711 aa, and to Neisseria meningitidis NADH FT dehydrogenase I chain G NuoG or Nma0010 TR:Q9JX87 FT (EMBL:AL162752) (753 aa) fasta scores: E(): 1.1e-89, FT 48.383% id in 773 aa" FT /db_xref="GOA:Q7VZP9" FT /db_xref="InterPro:IPR019574" FT /db_xref="UniProtKB/TrEMBL:Q7VZP9" FT /protein_id="CAE41150.1" FT /translation="MVELTVDGNQVEVPEGSMVMHAAQKLGLYVPHFCYHKKLSIAANC FT RMCLVEVEKAPKALPACATPVTNGMVVHTCSEKAKAAQKSVMEFLLINHPLDCPICDQG FT GECQLQDLAVGYGGSSSRYKEEKRVVFHKDLGPLVSAEEMARCIHCTRCVRFGQEIAGV FT MELGMLNRGEHAEITSFVGRSIESELSGNMIDLCPVGALTSKPFRYSARTWELARRRSV FT SPHDSMGANLVVQVKGDCALRVVPFENEALNECWISDRDRFSYEGLNSDDRLAAPMIKG FT ADGKWQEASWADALQAVAQGLSRVRESFGAGQIGALASEYATTEEFSLLGRLVRALGSE FT NIDFRLRQTDAGFDAALSGAPWLGMPVAELDNLDRVLVIGSFLRKDHPLMAQRLRQAAK FT RGTQVLLLDAAADDPLMPVAGRLTVAPSGLASALAEVAVALAQAKGQAVPAEFAAVAAG FT EGAKQIAASLASGSNAAVLLGNMAVNAPQAATLAANAQAVAQLAGAKLGFLTAGGNTVG FT GYLAGAVPGKGGKNAAAMLADPLKAYIVLHAEPSLDADNAPQALAALRGAQFAVALTPY FT RSAAQGWADVMLPVAPFTETSGTFVNAQGQPQSFKGTVAPFGQTRPAWKVLRVLGNVLH FT LAGFDEETSETVRDAALAGGVEARLSNAISAPLGLGQPLDALERVADVPIYRTDAIVRR FT SEPLQAAPASRAPKARMNGRTLASLGVSAGDKVRVSGAAGAIELEAALDEAVADRAVRV FT AAAFEQTAALGGAFGQISVERV" FT misc_feature 180894..181094 FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain" FT misc_feature 181182..181220 FT /note="ScanRegExp hit to PS00642, Respiratory-chain NADH FT dehydrogenase 75 Kd subunit signature 2. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature 181326..181358 FT /note="ScanRegExp hit to PS00643, Respiratory-chain NADH FT dehydrogenase 75 Kd subunit signature 3. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature 181545..181589 FT /note="ScanRegExp hit to PS00066, FT Hydroxymethylglutaryl-coenzyme A reductases signature 1." FT CDS 183218..184291 FT /transl_table=11 FT /gene="nuoH" FT /locus_tag="BP0848" FT /product="NADH-ubiquinone oxidoreductase, chain H" FT /EC_number="1.6.5.3" FT /note="Similar to Paracoccus denitrificans NADH-ubiquinone FT oxidoreductase chain 8 Nqo8 SW:NQO8_PARDE (P29920) (345 aa) FT fasta scores: E(): 5.6e-45, 44.109% id in 331 aa, and to FT Neisseria meningitidis NADH dehydrogenase I chain H NuoH or FT Nma0009 TR:Q9JX88 (EMBL:AL162752) (358 aa) fasta scores: FT E(): 7.6e-78, 58.011% id in 362 aa" FT /db_xref="GOA:Q7VZP8" FT /db_xref="InterPro:IPR018086" FT /db_xref="UniProtKB/Swiss-Prot:Q7VZP8" FT /protein_id="CAE41151.1" FT /translation="MEWLNVLESHGQALLGPVAWMVVWSLVKIVVIAVPIILCVAYLTY FT WERKMIGAMHVRLGPTRVGFKGLLQPFADVFKLLTKEVVVPSAANKVLFVVAPVVTLMP FT ALAAWAVVPFGPEVVLANVNAGLLYIMAITSIGVYGVIVAGWASNSKYAFLGALRASAQ FT MVSYELAIGFVLVSVLLVSGSLNMSEIVLGQGRGWFAERGLTFLSWNWLPLLPLFIIYV FT ISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFFLGEYANMILLSCMAAIMFLGG FT WMSPIDIAPLNWIPGWIWLGIKTFCVVSMFVWFRASFPRYRYDQIMRLGWKIFIPLTGV FT WLVVLAIWMQTPWNIWR" FT misc_feature join(183275..183343,183491..183550,183593..183661, FT 183722..183790,183833..183892,183986..184054, FT 184097..184165,184202..184270) FT /note="8 probable transmembrane helices predicted for FT BP0848 by TMHMM2.0 at aa 20-42, 92-111, 126-148, 169-191, FT 206-225, 257-279, 294-316 and 329-351" FT misc_feature 183281..184270 FT /note="HMMPfam hit to PF00146, NADH dehydrogenase" FT misc_feature 183914..183955 FT /note="ScanRegExp hit to PS00668, Respiratory-chain NADH FT dehydrogenase subunit 1 signature 2. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 184313..184801 FT /transl_table=11 FT /gene="nuoI" FT /locus_tag="BP0849" FT /product="NADH-ubiquinone oxidoreductase, chain I" FT /EC_number="1.6.5.3" FT /note="Similar to Paracoccus denitrificans NADH-ubiquinone FT oxidoreductase chain 9 Nqo9 SW:NQO9_PARDE (P29921) (163 aa) FT fasta scores: E(): 2.3e-38, 65.132% id in 152 aa, and to FT Neisseria meningitidis NADH dehydrogenase I chain I NuoI or FT Nma0008 or nmb0251 TR:Q9JQM2 (EMBL:AL162752) (159 aa) fasta FT scores: E(): 7.1e-48, 72.956% id in 159 aa" FT /db_xref="GOA:Q7VZP7" FT /db_xref="HSSP:1A6L" FT /db_xref="InterPro:IPR010226" FT /db_xref="UniProtKB/Swiss-Prot:Q7VZP7" FT /protein_id="CAE41152.1" FT /translation="MEAIKDFFGSLLLTELFKGLRLTGKYFFKRKVTLRYPMEKTPTSA FT RFRGLHALRRYPNGEERCIACKLCEAVCPALAITIESEQRDDGTRRTTRYDIDLTKCIF FT CGFCEESCPVDSIVETHIHEYHGEKRGDLYFTKDMLLAVGDRYEAEIARRRAEDAPYR" FT misc_feature 184478..184549 FT /note="HMMPfam hit to PF00037, 4Fe-4S binding domain" FT misc_feature 184499..184534 FT /note="ScanRegExp hit to PS00198, 4Fe-4S ferredoxins, FT iron-sulfur binding region signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 184595..184666 FT /note="HMMPfam hit to PF00037, 4Fe-4S binding domain" FT misc_feature 184616..184651 FT /note="ScanRegExp hit to PS00198, 4Fe-4S ferredoxins, FT iron-sulfur binding region signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 184625..184690 FT /note="ScanRegExp hit to PS00028, Zinc finger, C2H2 type, FT domain signature." FT CDS 184819..185466 FT /transl_table=11 FT /gene="nuoJ" FT /locus_tag="BP0850" FT /product="NADH-ubiquinone oxidoreductase, chain J" FT /EC_number="1.6.5.3" FT /note="Similar to Paracoccus denitrificans NADH-ubiquinone FT oxidoreductase chain 10 Nqo10 SW:NQOA_PARDE (P29922) (200 FT aa) fasta scores: E(): 4.2e-21, 46.927% id in 179 aa, and FT to Neisseria meningitidis NADH dehydrogenase I, J subunit FT Nmb0253 TR:Q9K1B2 (EMBL:AE002382) (223 aa) fasta scores: FT E(): 5.4e-28, 46.009% id in 213 aa" FT /db_xref="GOA:Q7VZP6" FT /db_xref="InterPro:IPR001457" FT /db_xref="UniProtKB/TrEMBL:Q7VZP6" FT /protein_id="CAE41153.1" FT /translation="MTFTTVLFYILAFVLVIAAFRVITARSPVTAVLHLILAFANAAMI FT WMLLGAEFLALLLVLVYVGAVMVLFLFVVMMLDIRIDSLRDGLKTYLPLGLVIGVVLVL FT EMAFVLGSTWYGAGPQAPVAGDYNNARALGEVMYTQYVYAIEVGAALLLVGMVAAIALT FT LRRRRDAKYNDPVAAVRVRAKDRFRMVKMTAQSDRAQARVASPSADAQGEQQ" FT misc_feature 184819..184890 FT /note="Signal peptide predicted for BP0850 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.881) with cleavage site FT probability 0.278 between residues 24 and 25" FT misc_feature 184828..185310 FT /note="HMMPfam hit to PF00499, FT NADH-ubiquinone/plastoquinone oxidoreductase chain 6" FT misc_feature join(184831..184890,184909..184968,184981..185049, FT 185086..185154,185242..185310) FT /note="5 probable transmembrane helices predicted for FT BP0850 by TMHMM2.0 at aa 5-24, 31-50, 55-77, 90-112 and FT 142-164" FT CDS 185463..185771 FT /transl_table=11 FT /gene="nuoK" FT /locus_tag="BP0851" FT /product="NADH-ubiquinone oxidoreductase, chain K" FT /EC_number="1.6.5.3" FT /note="Similar to Paracoccus denitrificans NADH-ubiquinone FT oxidoreductase chain 11 Nqo11 SW:NQOB_PARDE (P29923) (101 FT aa) fasta scores: E(): 5.4e-23, 69.388% id in 98 aa, and to FT Neisseria meningitidis NADH dehydrogenase I chain K NuoK or FT Nma0005 or Nmb0254 TR:Q9JQU9 (EMBL:AL162752) (101 aa) fasta FT scores: E(): 1e-23, 69.000% id in 100 aa" FT /db_xref="GOA:Q7VZP5" FT /db_xref="InterPro:IPR001133" FT /db_xref="UniProtKB/TrEMBL:Q7VZP5" FT /protein_id="CAE41154.1" FT /translation="MTLTLAHYLILGAILFAIGIFGIFLNRRNLIILLMSIELVLLAVN FT MNFVAFSSWFGDIAGQVFVFFILTVAAAEAAIGLAILVLLFRNLNTINVDELDRLKG" FT misc_feature 185469..185768 FT /note="HMMPfam hit to PF00420, FT NADH-ubiquinone/plastoquinone oxidoreductase chain 4L" FT misc_feature join(185472..185537,185550..185618,185646..185714) FT /note="3 probable transmembrane helices predicted for FT BP0851 by TMHMM2.0 at aa 4-25, 30-52 and 62-84" FT CDS 185789..187801 FT /transl_table=11 FT /gene="nuoL" FT /locus_tag="BP0852" FT /product="NADH-ubiquinone oxidoreductase, chain L" FT /EC_number="1.6.5.3" FT /note="Similar to Synechococcus sp NADH-plastoquinone FT oxidoreductase chain 5 NdhF SW:NU5C_SYNP2 (P31971) (664 aa) FT fasta scores: E(): 3.2e-81, 42.285% id in 674 aa, and to FT Neisseria meningitidis NADH dehydrogenase I chain L NuoL or FT Nma0002 SW:NUOL_NEIMA (Q9JX92) (674 aa) fasta scores: E(): FT 9.9e-147, 61.367% id in 673 aa" FT /db_xref="GOA:Q7VZP4" FT /db_xref="InterPro:IPR003916" FT /db_xref="UniProtKB/TrEMBL:Q7VZP4" FT /protein_id="CAE41155.1" FT /translation="MSSSPNLYLLIALAPLVGAILAGQFGTGFLGRPIGRRGSHVITIL FT GVLISTIGSFVVLGDVLDGHTYDGTVYTWSLIGQTKLEIGFLIDPLSAMMMVVVTSVSL FT MVHIYTIGYMADDPGYQRFFAYISLFTFSMLMLVMSNNMVQLFFGWEAVGLVSYLLIGF FT WYTRPTAIFANMKAFLINRVGDFGFVLGIGLLFAYAGTMHYADVFAQADKLAGETLPGT FT DWMLLTVACICLFIGAMGKSAQVPLHAWLPDSMEGPTPISALIHAATMVTAGIFMVARF FT SPLFELSDTALSFVIVIGAIGALFLGILGIIQNDIKRVVAYSTLSQLGYMTVALGASAY FT SVAIFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMGGLRKYMPITWITFLLGTLALV FT GTPFFSGFYSKEHIIEAAGAANVWGASFAYYSTLIGVFVTSLYSFRVYFLVFHGKERFD FT AHGHGHHGDAHHDDHGHHGGTPHESPWVVTLPLVLLAIPSVLIGAWVVEPMLFGKFFDG FT VIKVLPQHPAMAELGHEWHGWVAFGLHSVQTVPFWLVVAGAVIAWYCYLINPRVPAAIQ FT STFSGVYKLLENKYYVDWINEQIIARGARCLGYGLWQTGDRGIIDGVLVNGSARVVGWV FT AAISRHLQSGFIYHYAFAMIIGIMALVTFFVLIPQ" FT misc_feature 185789..185854 FT /note="Signal peptide predicted for BP0852 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.969) with cleavage site FT probability 0.919 between residues 22 and 23" FT misc_feature join(185816..185884,185903..185971,186065..186133, FT 186152..186205,186215..186283,186344..186412, FT 186455..186508,186569..186628,186656..186724, FT 186743..186811,186821..186889,186950..187009, FT 187067..187135,187238..187306,187430..187489, FT 187724..187792) FT /note="16 probable transmembrane helices predicted for FT BP0852 by TMHMM2.0 at aa 10-32, 39-61, 93-115, 122-139, FT 143-165, 186-208, 223-240, 261-280, 290-312, 319-341, FT 345-367, 388-407, 427-449, 484-506, 548-567 and 646-668" FT misc_feature 185996..186175 FT /note="HMMPfam hit to PF00662, NADH-Ubiquinone FT oxidoreductase (complex I), chain 5 N-terminus" FT misc_feature 186206..187096 FT /note="HMMPfam hit to PF00361, FT NADH-Ubiquinone/plastoquinone (complex I), various chains" FT CDS 187801..189300 FT /transl_table=11 FT /gene="nuoM" FT /locus_tag="BP0853" FT /product="NADH-ubiquinone oxidoreductase, chain M" FT /EC_number="1.6.5.3" FT /note="Similar to Marchantia polymorpha NADH-ubiquinone FT oxidoreductase chain 4 Nd4 or Nad4 SW:NU4M_MARPO (P26848) FT (495 aa) fasta scores: E(): 1.3e-83, 47.510% id in 482 aa, FT and to Neisseria meningitidis NADH dehydrogenase chain M FT NuoM or Nma2229 TR:Q9JSL7 (EMBL:AL162758) (498 aa) fasta FT scores: E(): 8.3e-115, 64.414% id in 503 aa" FT /db_xref="GOA:Q7VZP3" FT /db_xref="InterPro:IPR010227" FT /db_xref="UniProtKB/TrEMBL:Q7VZP3" FT /protein_id="CAE41156.1" FT /translation="MASDMASNNFPWLTLAIFVPIVFGLLVLALGRDDRPGLTRGLSLI FT GALAGFLVTIPLYTGFEAGTAQMQFVEKASWIEAFNVNYHLGIDGISLWFVLLTAFITI FT IVVGAGWQVITSRVAQYMAAFLILSGLMVGVFAALDGMLFYVFFEATLIPMYIIIGVWG FT GPNRVYAAFKFFLYTLLGSLLTLVAFVYLWNVSGGSFDIQTWHQTKLGYTPQVLIFVAL FT LAAFAVKVPMWPVHTWLPDAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPDASHGL FT AGLMIALSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGFVTLGFFIFNTAGLEGAIVQM FT ISHGFVSGAMFLCIGVLYDRMHSRRIADYGGVVNVMPRFVTFFVLFSMANSGLPATSGF FT VGEFLVIMGAVEYNFWIGLLTATALILGASYSLWMLKRVAFGDIGNDRVREMTDLSGRE FT FLILGVMAIAVLFMGIYPKPFTDVMHVSVEALLQHVAVSKL" FT misc_feature join(187825..187893,187912..187980,188074..188142, FT 188161..188214,188224..188292,188311..188379, FT 188437..188505,188542..188610,188638..188706, FT 188725..188793,188806..188874,188935..189003, FT 189031..189099,189160..189228) FT /note="14 probable transmembrane helices predicted for FT BP0853 by TMHMM2.0 at aa 10-32, 39-61, 93-115, 122-139, FT 143-165, 172-194, 214-236, 249-271, 281-303, 310-332, FT 337-359, 380-402, 412-434 and 455-477" FT misc_feature 188212..189084 FT /note="HMMPfam hit to PF00361, FT NADH-Ubiquinone/plastoquinone (complex I), various chains" FT CDS 189311..190795 FT /transl_table=11 FT /gene="nuoN" FT /locus_tag="BP0854" FT /product="NADH-ubiquinone oxidoreductase, chain N" FT /EC_number="1.6.5.3" FT /note="Similar to Paracoccus denitrificans NADH-ubiquinone FT oxidoreductase chain 14 Nqo14 SW:NQOE_PARDE (P29926) (499 FT aa) fasta scores: E(): 1.7e-60, 41.004% id in 478 aa, and FT to Neisseria meningitidis NADH dehydrogenase chain N NuoN FT or Nma2228 TR:Q9JSL8 (EMBL:AL162758) (481 aa) fasta scores: FT E(): 8.4e-55, 49.290% id in 493 aa" FT /db_xref="GOA:Q7VZP2" FT /db_xref="InterPro:IPR010096" FT /db_xref="UniProtKB/TrEMBL:Q7VZP2" FT /protein_id="CAE41157.1" FT /translation="MMQSHLDFALATPEILLLVLGLAILLIDAVSSHPERKTTFVLTLA FT TLAALTVVSLLQWRDGVEGQTFNGLYVTDSLAHLLKVASYIAVAATLVYGRIYAQQRDM FT MQRGGELYVLTLFALLGQMVMISAGNLISIYLGLELMSLALYALIALRREDKVATEAAM FT KYFVLGALASGFLLYGMSMVYGATGHLDLAKIAEVIASGQAKQLPLVFGVVFLVSGLAF FT KLGAVPFHMWLPDVYQGSPTAVTLILGAAPKLAAFAITLRLLVDGLHGLAADWQPMLMI FT LAVLSLAIGNLTAIVQTNFKRMLAYSTISHTGFVLLGLMAGVVDGKPDAAASAYGAALF FT YMLTYVLTTLGTFGIILLLARQGFECEQIDDLKGLNRRNPWHAAIVLLLMFSLAGIPPL FT VGFYAKLAVLQALVEAGHVALAVVAVMFSLIGAFYYLRVVKVVYFDDPVDQPAALAVTA FT GQRSILSLNGALILVLGILPGGLMALCVQVIQASLG" FT misc_feature join(189338..189406,189425..189478,189536..189604, FT 189641..189694,189704..189766,189803..189871, FT 189929..189997,190034..190102,190145..190198, FT 190217..190279,190322..190390,190451..190519, FT 190547..190615,190715..190783) FT /note="14 probable transmembrane helices predicted for FT BP0854 by TMHMM2.0 at aa 10-32, 39-56, 76-98, 111-128, FT 132-152, 165-187, 207-229, 242-264, 279-296, 303-323, FT 338-360, 381-403, 413-435 and 469-491" FT misc_feature 189692..190606 FT /note="HMMPfam hit to PF00361, FT NADH-Ubiquinone/plastoquinone (complex I), various chains" FT CDS 190812..191141 FT /transl_table=11 FT /locus_tag="BP0855" FT /product="putative membrane protein" FT /note="Similar to Neisseria meningitidis hypothetical inner FT membrane protein Nma2227 TR:Q9JSL9 (EMBL:AL162758) (116 aa) FT fasta scores: E(): 4.5e-10, 36.634% id in 101 aa" FT /db_xref="InterPro:IPR016768" FT /db_xref="UniProtKB/TrEMBL:Q7VZP1" FT /protein_id="CAE41158.1" FT /translation="MNQTAAVWLLIALALVSANLPFLSERVFALLPYKRAGVHAPKPFW FT LRLCEVLVWYAVVGLLGFAFEAQLGNRFAQAWEFYAITFSLFLVLGYPGFVYRYLYKKR FT RPARA" FT misc_feature 190812..190865 FT /note="Signal peptide predicted for BP0855 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.969) with cleavage site FT probability 0.300 between residues 18 and 19" FT misc_feature join(190821..190880,190941..191003,191046..191114) FT /note="3 probable transmembrane helices predicted for FT BP0855 by TMHMM2.0 at aa 4-23, 44-64 and 79-101" FT CDS 191442..193673 FT /transl_table=11 FT /gene="bfrD" FT /locus_tag="BP0856" FT /product="probable TonB-dependent receptor for iron FT transport" FT /note="Similar to Pseudomonas aeruginosa hydroxamate-type FT ferrisiderophore receptor PiuA or Fiu or Pa4514 TR:O68590 FT (EMBL:AF051690) (753 aa) fasta scores: E(): 1.1e-95, FT 37.317% id in 753 aa, and to Caulobacter crescentus FT TonB-dependent receptor Cc0028 TR:Q9AC38 (EMBL:AE005677) FT (851 aa) fasta scores: E(): 1.7e-47, 38.562% id in 765 aa" FT /db_xref="GOA:P81549" FT /db_xref="InterPro:IPR010105" FT /db_xref="UniProtKB/Swiss-Prot:P81549" FT /protein_id="CAE41159.1" FT /translation="MKFYSSHPMPESLAAAIAVPLLGLLPAAQAASTAVQLPSVTVEGE FT YSSYQPESAQSPKFTAPLADTPRTVQVIPERLIQDQGASDLEAVLRNAPGISMTAGEGG FT RPASDLPFIRGQNSASSLFVDGLRDPSTQSRDTFNLEQVDVVKGPDSVFSGRGGAGGSI FT NLVTKTPRNQDFTEVQAGIGTAETYRGTIDGNWVLGENTALRLNLLGTRDTVPGRDKAV FT EFSRVGIAPSLRLGLSGPTRVTLGLYHYRHRRVPDYSIPYDPRTGTPITETIGVSRRNF FT YGLVRRDSGDTEDYAATVKWEHDLANGFKVENLARYSRATVEQITTMPELKTADLAKGL FT VYRNLRASYQVNDSFANRTDLRGTFDTGQWRHTFDLGGEFATSRRSRDRYKQEIPDAAS FT PCSPVTDGNNPALCASLRDPDPHVDFPGTVRRNHNPARYHTDILSLYGFDTIAFDEQWQ FT LNLGLRWDHYKTSGRNLPVRGAKPPVYERAARTDNLFNYQLGLVYKPRPDGSVYASYGT FT ASTPSAVSDYAPADSISGTSQQLKPERSEAIEIGTKWQVLDRRLLVTGAMFRETRKNTS FT IEVAEGLRAPAGKSRVTGMELGVAGSLTPRWDVYGGYALLDSKLVRASHKSGAQGQPLP FT SAPRHAFSIWSTYKLLPELTVGAGAFYRSKVYGNADAGYNKDGTPKARWVPAYWRFDAM FT AAYQLNKHLTAQLNVYNLLDKTYYAKTYRSHYAALGPGRSAMLTFKLSY" FT misc_feature 191442..191531 FT /note="Signal peptide predicted for BP0856 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.962 between residues 30 and 31" FT misc_feature 193335..193670 FT /note="HMMPfam hit to PF00593, TonB dependent receptor FT C-terminal region" FT CDS 193897..196155 FT /transl_table=11 FT /gene="bfrE" FT /locus_tag="BP0857" FT /product="probable TonB-dependent receptor for iron FT transport" FT /note="Similar to Pseudomonas aeruginosa hydroxamate-type FT ferrisiderophore receptor PiuA or Fiu or Pa4514 TR:O68590 FT (EMBL:AF051690) (753 aa) fasta scores: E(): 3.4e-106, FT 43.742% id in 775 aa, and to Escherichia coli probable FT TonB-dependent receptor YbiL precursor YbiL or B0805 FT SW:YBIL_ECOLI (P75780) (760 aa) fasta scores: E(): 7.2e-50, FT 35.058% id in 773 aa" FT /db_xref="GOA:Q7VZP0" FT /db_xref="InterPro:IPR010105" FT /db_xref="UniProtKB/TrEMBL:Q7VZP0" FT /protein_id="CAE41160.1" FT /translation="MKSLDSYSASTLANSLAAAIAVPALCLMPGAQAQTSAGVTQLAPV FT QVEGEASPYQATTVQSSKMTAPLLDTPRTVQVVPQQVIQDQAATNLQDVLRNSPGITMG FT AGEGGRAGGDLPIIRGQNAAGSIFVDGVRDPSTQIRDTFNLEQVEIIKGPDSVYSGRGG FT AGGSINLVSKTPKARDFAEGSVQIGTDSNYRATADGNWLLGDNAAFRLNLMGNKGDVPG FT RDHAVDFSRWGVAPTLQLGVGTPTRITLGYYHYQDDSMPDYAIPYDPKSGQPVTETQGV FT SRKNFYGLTGRDFMKSRDDVATLAIDHDFSSKLRLRNVTRYGRSVTDYAATNPDDSKGN FT VPNGLVYRALKAGYYTNKTFTNQTDLSGEFETGSLQHSFDVGFEYSNIKQDKDSYTQTI FT AKGAMPCKVGANDASNPALCTSLWDPDPHDYYPGHLSRNDNPARYSTDTIALYGFDTIK FT FNEQWQASVGLRWDNYRVSGSNIARGRNDPASTPAFYSTSREDNLFNYQLGLAYKPVPN FT GTIYASYGTSSTPSAVAGSNVSDAVTVSNESLAPEKSRTVEVGTKWQLFDDRLTLSGAL FT FQDIRKNTSVAVSATETEQIGKAKVRGIELGFSGSITPKWNVYGGYTFMDSELVEGAYN FT SGAVGQDLPNTPRNAFSLWTTYKLVPQLTVGGGAYYVDKVYGNADNGRNADGTPKARWV FT PSYWRFDAMAAYEFNDHLTAQLNVMNIFDKTYYTKAYAAHYAALGTGRAAVLSFNIKY" FT misc_feature 193897..193995 FT /note="Signal peptide predicted for BP0857 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.997 between residues 33 and 34" FT misc_feature 195817..196152 FT /note="HMMPfam hit to PF00593, TonB dependent receptor FT C-terminal region" FT CDS 196268..196786 FT /transl_table=11 FT /locus_tag="BP0858" FT /product="probable GnaT-family acetyltransferase" FT /note="Similar to Caulobacter crescentus acetyltransferase, FT GnaT family Cc1083 TR:Q9A9B1 (EMBL:AE005785) (173 aa) fasta FT scores: E(): 3.2e-14, 32.530% id in 166 aa, and to FT Rhizobium loti Mll3172 protein Mll3172 TR:Q98GU4 FT (EMBL:AP003001) (179 aa) fasta scores: E(): 1.5e-13, FT 32.544% id in 169 aa" FT /db_xref="GOA:Q7VZN9" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:Q7VZN9" FT /protein_id="CAE41161.1" FT /translation="MTNMRQVLKTDRLVLEPQSMARFDQWFAMERQRDEAGHRDLTEDQ FT AWLRLCARQGMWDAYACGFYYLLDPVSGEMRGEAGFQFRRRGFGPGFDNHPEAAWAVAS FT AHQGRGLAAEAMQALLAHHDRSSGRQRVVALIARSNLPSLRLAERLGFRGYSDVAFDGA FT AHLLLERAG" FT misc_feature 196466..196726 FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family" FT CDS complement(196796..197572) FT /transl_table=11 FT /locus_tag="BP0859" FT /product="short-chain dehydrogenase" FT /note="Similar to Escherichia coli 7-alpha-hydroxysteroid FT dehydrogenase HdhA or HsdH or B1619 or X2624 or Ecs2327 FT SW:HDHA_ECOLI (P25529) (255 aa) fasta scores: E(): 4.6e-23, FT 36.800% id in 250 aa, and to Rhodopseudomonas palustris FT putative 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase FT BadH TR:O07457 (EMBL:U75363) (255 aa) fasta scores: E(): FT 3.9e-27, 41.569% id in 255 aa" FT /db_xref="GOA:Q7VZN8" FT /db_xref="HSSP:1GZ6" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VZN8" FT /protein_id="CAE41162.1" FT /translation="MTPREQPRFRGKRALVTGAGAGIGRAIALALAKDGAHVCVLDADH FT AAADETAAMVRQLGAEAATIVHDMGCASVVASIASMQDGFGAFDLLVNNAGISPKQPDG FT RKRMIWETPPEEWQRVIQVNLCGYFFALRAVLPGMVERRAGAVVNIASLAGLRYSSIAG FT ASYATAKNAVVGLTRQAAGEVAEFGIRINCVAPGRIETAMASVAGGEFNETIRASTPLR FT RLGQPADIADAVLFLLSEQAGFITGETLPVTGGRGL" FT misc_feature complement(196808..196825) FT /note="ScanRegExp hit to PS00343, Gram-positive cocci FT surface proteins 'anchoring' hexapeptide." FT misc_feature complement(196817..196909) FT /note="HMMPfam hit to PF00678," FT misc_feature complement(196967..197539) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT misc_feature complement(197030..197116) FT /note="ScanRegExp hit to PS00061, Short-chain FT dehydrogenases/reductases family signature." FT misc_feature complement(197477..197572) FT /note="Signal peptide predicted for BP0859 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.924) with cleavage site FT probability 0.689 between residues 32 and 33" FT CDS complement(197569..199257) FT /transl_table=11 FT /locus_tag="BP0860" FT /product="putative acetolactate synthase large subunit" FT /EC_number="2.2.1.6" FT /note="Similar to Escherichia coli acetolactate synthase FT isozyme III large subunit IlvI or b0077 SW:ILVI_ECOLI FT (P00893) (574 aa) fasta scores: E(): 2e-18, 28.571% id in FT 532 aa, and to Rhizobium meliloti probable AtrC FT acetolactate syntase AtrC TR:AAK65177 (EMBL:AE007243) (570 FT aa) fasta scores: E(): 4.3e-100, 50.722% id in 554 aa" FT /db_xref="GOA:Q7VZN7" FT /db_xref="HSSP:1OZF" FT /db_xref="InterPro:IPR012000" FT /db_xref="UniProtKB/TrEMBL:Q7VZN7" FT /protein_id="CAE41163.1" FT /translation="MLKAAGVAQIFGQSCPTALFLAADAIGIRQIGYRTENAGAAMADG FT AARVGRQLTVITAQNGPAAALLVAGFSEATKASVPILAIVQEVPRANADKNAFQELDHV FT QLFASCAKWVRRIDVAERAAEYTERAIRIATSGRPGPVVLLVSQDVLTTACPQARPVAQ FT DSDEPLGRFPLDRTVPVAGRLAQLAQRLLDAKRPLVVAGGGVHLSGACDALARLQSLAG FT LPVATTNMGKGAIDETHPLSLGVIGNAMGTRSPAKHFMDYVRSADFVLFVGTRTNENGT FT ASWSLFPEQAQYAQIDIDSEEVGRNYGAMRFAGDAAATLQALGDALQGRGQAVAARRMA FT ELAPAFEACRQAHRAELAPYAQSDASPMRPERIMAELRASHGDIIWVADASYSSIWLAQ FT FIPCTEAGTRFVTPRGIAGLGWGVPMAIGAKIARPGARVICLTGDGGFAHCWAELETAR FT RHEVPLTIVVLNNGVLGFQINAEESRFGTHTDVCHFGAIDHVAIAKACGCDGASVSDAA FT SLRQAMAAAERSPVPFVIDVKTEPSAFPPISAFESQLRPLGGETP" FT misc_feature complement(197647..199179) FT /note="HMMPfam hit to PF00205, Thiamine pyrophosphate FT enzyme, central domain" FT misc_feature complement(197920..197979) FT /note="ScanRegExp hit to PS00187, Thiamine pyrophosphate FT enzymes signature. Confirmed by InterPro eMOTIF pattern FT match." FT misc_feature complement(199213..199245) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(199419..200399) FT /transl_table=11 FT /locus_tag="BP0861" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 8.7e-43, 38.889% id in 324 aa, and to Agrobacterium FT tumefaciens Agr_l_312p TR:AAK88723 (EMBL:AE008213) (329 aa) FT fasta scores: E(): 4.2e-49, 46.226% id in 318 aa" FT /db_xref="GOA:Q7VZN6" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VZN6" FT /protein_id="CAE41164.1" FT /translation="MLLHRVLISLATGVLTLGVLGAAHADAYPTKPIRLVVPYPPGGIT FT DIAARGLARAMSEELKQSVIVENRAGAGGIIGSDYVARAPADDYTLLIGTSATHGTNPS FT TYANLPYSATGSFEPIAAVASSPLLVVVNPSSPVRDVQGLIAHLKANPGKESYASTGTG FT GSLHLTLELFKLMTGTDIQHVPYKVSAPALTDLIGGHVQLMFDNMPSSLPQVKAGSLRA FT LAVTGPQRSALVPELPTVAEAVPGFASASWVALYAPKNTPAAIVQTLNAAANKGLKSQD FT VLAQFSAAGLEPTGGTSAALDSFMRAEIAKWAEVVKKINLPPSKL" FT misc_feature complement(200325..200399) FT /note="Signal peptide predicted for BP0861 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.971 between residues 25 and 26" FT CDS 200537..201454 FT /transl_table=11 FT /locus_tag="BP0862" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Salmonella typhimurium OsmT protein OsmT FT TR:CAC44465 (EMBL:AJ313506) (308 aa) fasta scores: E(): FT 1.3e-25, 34.354% id in 294 aa, and to Rhizobium meliloti FT putative transcriptional regulator protein smb20123 FT TR:CAC48523 (EMBL:AL603642) (298 aa) fasta scores: E(): FT 8.2e-30, 35.932% id in 295 aa" FT /db_xref="GOA:Q7VZN5" FT /db_xref="HSSP:1IXC" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VZN5" FT /protein_id="CAE41165.1" FT /translation="MNVTFRQLTAFIEVASSRSFSQAAQALHVTQPALTAMIQKLETQL FT GVVLFTRTRRGAELTTTGRELLPELQRILANLEVVIEDVRGAASPRGGTVTLACIPSLS FT NTWIPSLIARVEQAYPRIKVILKDAMTENRSIHEMLRTGDIDYGVGSPSVEQDGLEFDL FT LAHDELVAVVPQDHPLARRTLVRWSELAESPLIGMSYQSHVRMLVDEAFAANGISKRPK FT REVSLITTAIGMVRAGLGVSVLPTTAIEVCNVAGLKVLRLHAPRVRRPLGFLHLPTRSL FT SPAARLLLRFVKDAGPIPLGKQPE" FT misc_feature 200549..200983 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 200588..200653 FT /note="Predicted helix-turn-helix motif with score 1639 FT (+4.77 SD) at aa 18-39, sequence RSFSQAAQALHVTQPALTAMIQ" FT misc_feature 200591..200683 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS complement(201583..202443) FT /transl_table=11 FT /gene="serB" FT /locus_tag="BP0863" FT /product="phosphoserine phosphatase" FT /EC_number="3.1.3.3" FT /note="Similar to Escherichia coli, and phosphoserine FT phosphatase SerB or B4388 or Z5989 or Ecs5346 SW:SERB_ECOLI FT (P06862) (322 aa) fasta scores: E(): 2.1e-28, 46.444% id in FT 239 aa, and to Neisseria meningitidis putative FT phosphoserine phosphatase SerB or nma1179 TR:Q9JUR1 FT (EMBL:AL162755) (277 aa) fasta scores: E(): 1.6e-31, FT 49.327% id in 223 aa" FT /db_xref="GOA:Q7VZN4" FT /db_xref="HSSP:1L7O" FT /db_xref="InterPro:IPR004469" FT /db_xref="UniProtKB/TrEMBL:Q7VZN4" FT /protein_id="CAE41166.1" FT /translation="MTIHHLVIQSPALAAEHAEQLAALAQAQGVTRISTTAARLLDVQQ FT DGDTRAQVRHWAETHGVDAAFVPAGLALADCRILAMDMDSTLINIECIDEIATVAGVGA FT QVAQITEAAMRGEIKDFSESLRRRVALLAGAPAAALERVYAEKLRLNPGAERLLASVRA FT AGIQTLLVSGGFTFFTERLRERLGLDHAHANTLEVDADGKLTGRVLGDILDGDAKAAHL FT AALAQCLSARPEQIIAIGDGANDLKMLARAGFAVAYHAKPIVREQTPYALNVCGLDGVL FT NWFEK" FT misc_feature complement(201658..202218) FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase" FT CDS complement(202479..205910) FT /transl_table=11 FT /gene="mfd" FT /locus_tag="BP0864" FT /product="transcription-repair coupling factor" FT /note="Similar to Escherichia coli transcription-repair FT coupling factor Mfd or B1114 SW:MFD_ECOLI (P30958) (1148 FT aa) fasta scores: E(): 6e-212, 51.619% id in 1143 aa, and FT to Pseudomonas aeruginosa transcription-repair coupling FT protein Mfd or Pa3002 TR:Q9HZK3 (EMBL:AE004725) (1148 aa) FT fasta scores: E(): 0, 54.440% id in 1126 aa" FT /db_xref="GOA:Q7VZN3" FT /db_xref="HSSP:1GM5" FT /db_xref="InterPro:IPR004576" FT /db_xref="UniProtKB/TrEMBL:Q7VZN3" FT /protein_id="CAE41167.1" FT /translation="MPIPATATTLSALKPGARFTQPRPPGSGDGWLLADLARQAGKPLV FT VLTADPLEAQRLADEIPQFAPELRVRQLPDWETLPYDAFSPHQDLISQRLRTLHALMNQ FT GVDILTVPVTTALYRLAPPAFLAAYTFSFKQKDRLDEAALRAQLTLANYSHVTQVTAPG FT EFCLRGGLIDLFPMGSVVPYRLDLFDDEIESIRSFDVDTQRSLYPVGEVQLLPGREFPM FT DEEARNRFRARFREVFEGDPSRALPYKDIGNGIAFAGIEYYLPLFFEQTATLFDYLAAD FT TITVTVGDIDDAMQRFAHDTRSRYDFLKVDRERPVLPPDTLFLDHEALFARLKDFPRLA FT LMAERPHPDFAAAPDVAVARRADDPVARLRALLAQTGDRVLLCADSAGRRETLAQMLGE FT HGLAPEAQADSIQAFLDDGARFGLAVAPLSAGFCVPGGALLFLTENDLYPGHAGVTRRG FT KRTQERTSNVEAMVRDLAELRAGDPVVHAQHGIGRYHGLVNMDMGEGEMEFLHLEYASG FT STLYVPVSQLHVIARYSGADPDAAPLHQLGSGQWDKARRKAARQVRDTAAELLALYAQR FT AAREGYAFKLPMSDYEAFAEGFGFEETPDQAAAIQAVIMDMTSGRPMDRLVCGDVGFGK FT TEVALRAAFLAVANGKQVALLCPTTLLAEQHAQTFSDRFADWPVRVVELSRFRSAKEVA FT AAVEGINDGRVDIVIGTHKILSKDVRFKRLGLVIIDEEHRFGVRQKETLKALRAEVDVL FT TLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAIKTFVRREDGSTIREALLRELKRGGQ FT VYFLHNEVETIHNRRARLEELVPEARIAVAHGQMPERELEQVMKGFYQQRHNVLLCTTI FT IETGIDIPTANTIVIHRADRFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITNNAKKR FT LEAIQAMEELGSGFYLAMHDLEIRGTGEILGDSQSGNIQEVGFSMYNEMLNEAVRALKA FT GEEPDLDAPFNLACEVNLHAPALLPSDYCPDVHGRLAIYKRLSHADGEDDLIRIQEELI FT DRFGKLPEAAQTLLATHRLRLAAQPLGIVKIDASETQALLQFGAKTTVDPLRIIELVQR FT QRHIKLSGQDKLRVEIKAPQIAARADAVRAVLRALK" FT misc_feature complement(203187..203441) FT /note="HMMPfam hit to PF00271, Helicase conserved FT C-terminal domain" FT misc_feature complement(203547..204137) FT /note="HMMPfam hit to PF00270, DEAD/DEAH box helicase" FT misc_feature complement(204003..204026) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 205964..206647 FT /transl_table=11 FT /gene="ispD" FT /locus_tag="BP0865" FT /product="4-diphosphocytidyl-2c-methyl-D-erythritol FT synthase" FT /EC_number="2.7.7.-" FT /note="Similar to Escherichia coli FT 4-diphosphocytidyl-2c-methyl-D-erythritol synthase IspD or FT B2747 SW:ISPD_ECOLI (Q46893) (235 aa) fasta scores: E(): FT 5.3e-27, 46.667% id in 225 aa, and to Pseudomonas FT aeruginosa 4-diphosphocytidyl-2c-methyl-D-erythritol FT synthase IspD or Pa3633 SW:ISPD_PSEAE (P57707) (234 aa) FT fasta scores: E(): 6.1e-27, 44.843% id in 223 aa" FT /db_xref="GOA:Q7VZN2" FT /db_xref="InterPro:IPR018294" FT /db_xref="UniProtKB/Swiss-Prot:Q7VZN2" FT /protein_id="CAE41168.1" FT /translation="MSESLIAIVPAAGIGARASLPGEAAVPKQYRPLAGQPMLRHAVRA FT LLADPRIVQVRVAVSAGDGWVEQALAGLPRTVWRPCGGPNRADTVAAALADSGAAADDW FT ILVHDAARPGLPAAALARLIDACLDDAVGGLLALPVADTVKAGRQRVSRTVDRDGLWLA FT QTPQMFRAGLLRDALARARAAGLAVTDEASAVEAAGHAPRLVAGALRNFKVTWPDDFEL FT MEKWL" FT misc_feature 205964..206035 FT /note="Signal peptide predicted for BP0865 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.612) with cleavage site FT probability 0.529 between residues 24 and 25" FT misc_feature 205976..206638 FT /note="HMMPfam hit to PF01128, Uncharacterized protein FT family UPF0007" FT misc_feature 206276..206299 FT /note="ScanRegExp hit to PS01295, FT 4-diphosphocytidyl-2C-methyl-D-erythritol synthase FT signature." FT CDS 206644..207132 FT /transl_table=11 FT /gene="ispF" FT /gene_synonym="mecS" FT /locus_tag="BP0866" FT /product="2C-methyl-D-erythritol 2,4-cyclodiphosphate FT synthase" FT /note="Similar to Escherichia coli 2C-methyl-D-erythritol FT 2,4-cyclodiphosphate synthase IspF or MecS or B2746 or FT Z4054 or Ecs3600 SW:ISPF_ECOLI (P36663) (159 aa) fasta FT scores: E(): 1.5e-28, 58.333% id in 156 aa, and to FT Neisseria meningitidis 2C-methyl-D-erythritol FT 2,4-cyclodiphosphate synthase IspF or Nmb1512 SW:ISPF_NEIMB FT (Q9JYM5) (160 aa) fasta scores: E(): 1.1e-35, 67.742% id in FT 155 aa" FT /db_xref="GOA:Q7VZN1" FT /db_xref="InterPro:IPR003526" FT /db_xref="UniProtKB/Swiss-Prot:Q7VZN1" FT /protein_id="CAE41169.1" FT /translation="MNIPFRVGQGFDVHALVEGRPLIIGGVTIAHTHGLLGHSDADVLL FT HAVTDALLGGAGLGDIGRHFPDTDPAYRGADSRVLLRAAFDKVRAAGWAPVNVDATIHA FT QAPKIGPHAAAMVANIAADLALDAGAVNIKAKTNEGLGYLGRKEGIAANVVVLLARAG" FT misc_feature 206656..207126 FT /note="HMMPfam hit to PF02542, YgbB family" FT misc_feature 206758..206805 FT /note="ScanRegExp hit to PS01350, 2C-methyl-D-erythritol FT 2,4-cyclodiphosphate synthase signature." FT repeat_region 207129..207160 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 207129..208181 FT CDS 207231..208181 FT /transl_table=11 FT /locus_tag="BP0867" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7VZN0" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7VZN0" FT /protein_id="CAE41170.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVSEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 207489..207554 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 207612..208145 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(208150..208181) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(208178..209197) FT /transl_table=11 FT /gene="fbp" FT /gene_synonym="fdp" FT /locus_tag="BP0868" FT /product="fructose-1,6-bisphosphatase" FT /EC_number="3.1.3.11" FT /note="Similar to Escherichia coli FT fructose-1,6-bisphosphatase Fbp or Fdp or B4232 FT SW:F16P_ECOLI (P09200) (332 aa) fasta scores: E(): 3.1e-49, FT 47.273% id in 330 aa, and to Pseudomonas aeruginosa FT fructose-1,6-bisphosphatase Fbp or Pa5110 TR:Q9HU73 FT (EMBL:AE004923) (336 aa) fasta scores: E(): 2.6e-97, FT 73.591% id in 337 aa" FT /db_xref="GOA:Q7VZM9" FT /db_xref="HSSP:1D9Q" FT /db_xref="InterPro:IPR000146" FT /db_xref="UniProtKB/Swiss-Prot:Q7VZM9" FT /protein_id="CAE41171.1" FT /translation="MKRKTLTQYLVEQQRSAQALGPEVRLLIEVVARACKAISHAVSKG FT ALGGVLGSLESENVQGEVQKKLDVLSNEILLEANEWGGHLAAMASEEMETIHLIPNRYP FT KGEYLLLFDPLDGSSNIDVNVSIGTIFSVLRAPHRVAGADVCEQDFLQPGSQQVAAGYA FT VYGPQTMLVLTIGNGVVGFTLDREMGSWVLTHESMRIPEDTKEFAINMSNMRHWAPPVK FT RYIDECLAGKTGPLGKDYNMRWIASMVADVHRILTRGGIFMYPWDAREPGKAGKLRLMY FT EANPMGLIVEQAGGAAIDGTGRILDIQPDKLHQRVSVILGSKNEVERVGRYHAEAHAS" FT misc_feature complement(208220..209017) FT /note="HMMPfam hit to PF00316, Fructose-1-6-bisphosphatase" FT CDS complement(209207..211915) FT /transl_table=11 FT /gene="pepN" FT /locus_tag="BP0869" FT /product="aminopeptidase N" FT /EC_number="3.4.11.2" FT /note="Similar to Escherichia coli aminopeptidase N PepN or FT B0932 SW:AMPN_ECOLI (P04825) (869 aa) fasta scores: E(): FT 1.6e-65, 47.052% id in 899 aa, and to Caulobacter FT crescentus aminopeptidase N PepN or Cc2481 SW:AMPN_CAUCR FT (P37893) (863 aa) fasta scores: E(): 1.3e-70, 48.946% id in FT 901 aa" FT /db_xref="GOA:Q7VZM8" FT /db_xref="InterPro:IPR006025" FT /db_xref="UniProtKB/TrEMBL:Q7VZM8" FT /protein_id="CAE41172.1" FT /translation="MRTDTPVTVYRKDYQPYPYTIADVALEFDLDPASTTVRCLMQVAR FT KADARDDAPLVLDGEALELVSIRVDGRDWARDGYVLDDATLTLRGLPPSAAVEIVSRCR FT PAANSTLMGLYVSGGNFFTQCEAEGFRRIAWFADRPDVMSRYRVTLRAAPDYPVLLSNG FT NLLATATLPDGRLQAEWEDPFPKPSYLFALVAGRLTHREERVRTQSGRDVLLQVYSDPG FT SENRTEWALESLRHALRWDESRFGLELDLDRFMVVAVRDFNMGAMENKGLNIFNAAYVL FT ADPATATDANYEGIESVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSADMMA FT RGLDEQAAASARAVKRIDDVVTLRAAQFPEDAGPMAHPIRPDSYQEIGNFYTATVYEKG FT AEVIRMQHTLLGEPGFRAGMDEYFRRHDGQAVTCDDFVAAMESVYAARNPGRDLSVFRR FT WYSQAGTPRVSVKLDHDAQSGRCTVTLTQRCAPVGVEKRAGRDFAKQAFHIPFAIGLLD FT AQGRALPLHLNGQPARDTVLLELTEARASWTFEQVPDMPVPSLLRGFSAPVIVEYDWSD FT ADLALLSAHDTDPFARWEAGQELATREILALTASHQAGQPLAVRPAFIAAWRALLTDPT FT LDAAYRARALALPSEKTLAERMEQIDPPALAVARDFLRAEVGRQLAAPWRAAFDANQTP FT GAYSPAAGPAGRRALKNQALSHLMAAESADAQALAQAQYDQADNMTDSMAALSALVNFG FT APDSAAAALAAFYERWRDDPLVVDKWFTLQATARSTDIDAVRALMAHPAFTLRNPNRAR FT ALVFQFCLNNARGMHRADGRGYDFWAEQVLALDALNPEIAARLARGLDNWARFAEPLRG FT AMQAALAHVRAHAGLSRNVQEIVSKALDLAA" FT misc_feature complement(210719..210850) FT /note="HMMPfam hit to PF01433, Peptidase family M1" FT misc_feature complement(210914..211573) FT /note="HMMPfam hit to PF01433, Peptidase family M1" FT misc_feature complement(210995..211024) FT /note="ScanRegExp hit to PS00142, Neutral zinc FT metallopeptidases, zinc-binding region signature." FT misc_feature complement(211139..211180) FT /note="ScanRegExp hit to PS01039, Bacterial extracellular FT solute-binding proteins, family 3 signature." FT CDS 212063..212719 FT /transl_table=11 FT /locus_tag="BP0870" FT /product="putative exported protein" FT /note="Similar to Zymomonas mobilis hypothetical 23.9 kDa FT protein TR:Q9EZA0 (EMBL:AF300471) (220 aa) fasta scores: FT E(): 0.00027, 33.333% id in 207 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VZM7" FT /protein_id="CAE41173.1" FT /translation="MFSIHAYSRLARLAGLAGLAGLAALLAGAALVAGCAAPSVSARVT FT SFQQWPDGVAGQTYQFAPESGQLNNLEYQSYQDMVRAGIGATGLVEAREGRKARFTVSF FT RYGSAQTQVMVRRAYDPYFYGGYGGYYGPRWWGGGVGYWGPEWVDVPTVAYRNSLSLEI FT RDTARGGAEVYRSTAYITSGRDDLLGAMPYLVQAIFDNFPGNNGSEREIEYPLAR" FT misc_feature 212063..212188 FT /note="Signal peptide predicted for BP0870 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.582 between residues 42 and 43" FT repeat_region 212716..212747 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 212716..213768 FT CDS 212818..213768 FT /transl_table=11 FT /locus_tag="BP0871" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA4" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA4" FT /protein_id="CAE41174.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 213076..213141 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 213199..213732 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(213737..213768) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(213765..215597) FT /transl_table=11 FT /locus_tag="BP0872" FT /product="ABC transporter, ATP-binding protein" FT /note="Similar to Rhizobium loti ATP-binding protein of ABC FT transporter Mll0815 TR:Q98LY9 (EMBL:AP002995) (601 aa) FT fasta scores: E(): 3.1e-156, 74.624% id in 599 aa, and to FT Agrobacterium tumefaciens Agr_l_309p TR:AAK88722 FT (EMBL:AE008213) (600 aa) fasta scores: E(): 4.1e-147, FT 68.781% id in 599 aa" FT /db_xref="GOA:Q7VZM6" FT /db_xref="HSSP:1MV5" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VZM6" FT /protein_id="CAE41175.1" FT /translation="MARNKLDLRGSAFKAVLGFTFRHWARQPWRIGLIAMLALLSALAD FT ILTPLYVGRLIDAVAGGAPADTVARNAALGAFWLLIALGVGATLLRQAIFMNIIALTLK FT MMHDIVGLAFHQVQRLSSDWHANTFAGSTVRKITRGMWALDLLNDTLLIALLPSLAMLA FT GATALLGWHWPLMGLVVGLGSLLYVAVTMALSLDYVAPAARLGNAWDTRMGGALADAVS FT CNAVVKAFGAEWREEARLARVTDKWRHRTRRGWVRGTINGGVQGAMLVAMQAAILGVAL FT LLWQRGQASVGDVTFAFTTFFMLQGYLRDVGMNIRNLQRSINDMEELVSLQRQPLDVED FT LPGAGPIDIGAGEIRFENVTFRYGPHEQPLYRDFSVRIAPGERVGLVGHSGSGKTTFIK FT LIQRLYDVDGGRITIDGQDIAAVRQASLRSQIAIVQQDPVLFHRSLAENIAYGRPGATQ FT AEIERAARLASAHDFIMALPKGYDTLVGERGVKLSGGERQRVAIARAFLADAPILILDE FT ATSSLDSESEVLIQRAMERLMEGRTTLVVAHRLSTVRALDRLLVMDRGRVIEEGSHEAL FT IRLHGGVYRRLFERQALELTRGLSQWELGGAAAS" FT misc_feature complement(213903..214457) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(214080..214124) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(214413..214436) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(214674..215507) FT /note="HMMPfam hit to PF00664, ABC transporter FT transmembrane region." FT misc_feature complement(join(214746..214811,214998..215063, FT 215079..215144,215313..215378,215439..215504)) FT /note="5 probable transmembrane helices predicted for FT BP0872 by TMHMM2.0 at aa 37-59, 79-101, 157-179, 184-206 FT and 268-290" FT CDS 215996..216655 FT /transl_table=11 FT /gene="tpm" FT /locus_tag="BP0873" FT /product="thiopurine S-methyltransferase" FT /EC_number="2.1.1.67" FT /note="Similar to Pseudomonas syringae thiopurine FT S-methyltransferase Tpm SW:TPMT_PSESJ (O86262) (218 aa) FT fasta scores: E(): 1.1e-35, 44.495% id in 218 aa, and to FT Pseudomonas aeruginosa thiopurine methyltransferase Tpm or FT Pa2832 TR:Q9I011 (EMBL:AE004710) (218 aa) fasta scores: FT E(): 1.5e-37, 49.309% id in 217 aa" FT /db_xref="GOA:Q7VZM5" FT /db_xref="HSSP:1PJZ" FT /db_xref="InterPro:IPR016822" FT /db_xref="UniProtKB/Swiss-Prot:Q7VZM5" FT /protein_id="CAE41176.1" FT /translation="MDADFWLDRWREGRTHFHQTRVTPLLQKYWPTLDVPAGGQVLVPL FT AGKSLDMVWLAGQGLRVLGVELSQLAVEQFFDENDLRPEIHQSAQGRHYVAGNLELICG FT DVFALEDATLAACAGVYDRAALVALPEPMRKRYAREVYGRLGRGCRGILITLDYPQDQM FT EGPPFSVDDAEVQALYAGHTEARLIDRRDILDKEPKFNQRGVARLDTLVYRLERLG" FT CDS 216743..216895 FT /transl_table=11 FT /gene="vir-18" FT /locus_tag="BP0874" FT /product="vir-repressed protein" FT /note="Identical to the previously sequenced Bordetella FT pertussis vir-repressed protein Vir-18 TR:Q04274 FT (EMBL:M37228) (23 aa) fasta scores: E(): 0.0007, 100.000% FT id in 23 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VZM4" FT /protein_id="CAE41177.1" FT /translation="MGMKSILGLLLAAALLGGCAVYTPHGAAVVDPPDRGGGFCPPGQA FT KKGNC" FT misc_feature 216761..216829 FT /note="1 probable transmembrane helix predicted for BP0874 FT by TMHMM2.0 at aa 30-52" FT misc_feature 216767..216799 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 217004..217171 FT /transl_table=11 FT /locus_tag="BP0875" FT /product="putative exported protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VZM3" FT /protein_id="CAE41178.1" FT /translation="MKFCMATLMLAASLALAGCAGGQGSQPGPPHPGAVNPYSSGGFHD FT AGPDYPDTGR" FT misc_feature 217004..217069 FT /note="Signal peptide predicted for BP0875 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.610 between residues 22 and 23" FT misc_feature 217028..217060 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(217183..217863) FT /transl_table=11 FT /locus_tag="BP0876" FT /product="putative lipoprotein" FT /note="Similar to Escherichia coli hypothetical lipoprotein FT YdcL precursor YdcL or B1431 or Z2287 or Ecs2036 FT SW:YDCL_ECOLI (P76101) (222 aa) fasta scores: E(): 4.1e-13, FT 30.942% id in 223 aa, and to Rhizobium meliloti putative FT polysaccharide export system periplasmic transmembrane FT protein Smc01794 TR:CAC45812 (EMBL:AL591786) (191 aa) fasta FT scores: E(): 2.1, 28.161% id in 174 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VZM2" FT /protein_id="CAE41179.1" FT /translation="MKSSLYRIAALSAAALLLAGCANQRAPKESGFLGDYSQLREEQVP FT GGARLIYRDAALKPRQYTAMWLSPVEYYPSPQPSAQVSMETLTELQNYLDQSLRRKIGR FT EIRLVNGPGPGVAKARIAITAVGSESEALAAYQYIPVALAVTGARAVLEGGRPQQATIA FT IESKVTDSQTGQLLWASVRGGTGERVRAIAQGQASVPASALKPLIDEWTDNVAREIRNY FT VRSK" FT misc_feature complement(217792..217863) FT /note="Signal peptide predicted for BP0876 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.596 between residues 24 and 25" FT misc_feature complement(217801..217833) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 218145..218861 FT /transl_table=11 FT /locus_tag="BP0877" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3353 TR:Q9HYP3 (EMBL:AE004757) (263 aa) fasta FT scores: E(): 0.00072, 27.426% id in 237 aa" FT /db_xref="InterPro:IPR009926" FT /db_xref="UniProtKB/TrEMBL:Q7VZM1" FT /protein_id="CAE41180.1" FT /translation="MPDAHDPYLVSGRFEIANLLQTLQARQCLLLMRIPGRPFNSVTSV FT LHVDAQAGQVVLDAAQDDTLNQRLADVGDVAFDTSLDNISISFAAARVARCEFEARPAL FT LVDLPETLTRVQRRDTFRIAVPVAQPATWVREAGGAEPLALCDISPGGLALADPLQTLD FT PAPGKIYRGVLALPELGAFAAAIRVVHHLDEVLAKGKTSRRIGCAFVELDKGTGIRIQA FT YVNALQRDQIARQRGL" FT CDS complement(218876..220177) FT /transl_table=11 FT /locus_tag="BP0878" FT /product="putative phospholipase" FT /note="Similar to Campylobacter coli phospholipase A PldA FT TR:O32349 (EMBL:Y11031) (297 aa) fasta scores: E(): FT 1.3e-09, 27.170% id in 265 aa, and to Campylobacter jejuni FT phospholipase A PldA or Cj1351 TR:Q9PMU8 (EMBL:AL139078) FT (329 aa) fasta scores: E(): 2.8e-09, 26.459% id in 257 aa" FT /db_xref="GOA:Q7VZM0" FT /db_xref="InterPro:IPR003187" FT /db_xref="UniProtKB/TrEMBL:Q7VZM0" FT /protein_id="CAE41181.1" FT /translation="MQVPDPRSPFIRPALAGALALALAGMSLPALAGISYRLDRPAAAP FT GETVRLEAVFFNDGSASAAWNAPQQLVLQWRGADDQTIRSLAQRPAGEAALNIPVNNFA FT RMSWDAVVPVHARGLQAVSIEGESTMLALDATGREQDTLASTPADVPVTDARTGQPLPP FT AAVTAAGVSPDSGPAPAQVAVSQTFQPASAFDVFRSAISEYQPMYFDIGTREQTTARFQ FT ISAKYRLFSPKGDRPATFGENFYLGYTQTSLWDLEGDSKPFIDTTFNPSAFWLSDNIWS FT SASQNWRVGLNTGVEHQSNGKSGNDSRSLNDAYVQPALNYRFDSGSTLTFAPKVKTYFG FT VARENLDYADYAGYVDWNLRWAQDGGAVVSAMYRQGASSRRTTQLDFAWPLKRTWLDMN FT GYLHLQYFNGYGETLLGYNQRHDSQFRIGLSLVP" FT misc_feature complement(220082..220177) FT /note="Signal peptide predicted for BP0878 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 32 and 33" FT CDS complement(join(220312..221151,221155..221334, FT 221337..221804)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0879" FT /product="probable aldehyde dehydrogenase (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 156 (the frameshift occurs within FT a polymeric tract of (G)4), and an in-frame TAG stop codon FT following codon 216. The sequence has been checked and FT believed to be correct. Similar to Streptomyces FT clavuligerus semialdehyde dehydrogenase Pcd TR:O85725 FT (EMBL:AF073895) (512 aa) fasta scores: E(): 1.9e-112, FT 62.955% id in 494 aa, and to Pseudomonas aeruginosa FT probable aldehyde dehydrogenase Pa1027 TR:Q9I4U7 FT (EMBL:AE004535) (529 aa) fasta scores: E(): 1.6e-130, FT 72.819% id in 493 aa" FT /db_xref="PSEUDO:CAE41182.1" FT misc_feature complement(join(220357..221151,221155..221334, FT 221337..221759)) FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family" FT misc_feature complement(221023..221046) FT /note="ScanRegExp hit to PS00687, Aldehyde dehydrogenases FT glutamic acid active site." FT variation complement(221152..221154) FT /note="TAG stop codon in pertussis; GAG in parapertussis FT and bronchiseptica" FT variation complement(221334..221337) FT /note="(G)4 in pertussis; (G)2 in parapertussis and FT bronchiseptica" FT tRNA 221986..222062 FT /note="tRNA Arg anticodon TCT, Cove score 90.16" FT CDS join(222346..224601,224610..225218) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0880" FT /product="putative exported protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 752. The frameshift occurs within FT a polymeric tract of (GCGCCGGC)3. The sequence has been FT checked and believed to be correct. Similar to Vibrio FT cholerae chemotactic transducer-related protein Vca0895 FT TR:Q9KL53 (EMBL:AE004417) (981 aa) fasta scores: E(): FT 6.7e-71, 32.070% id in 976 aa" FT /db_xref="PSEUDO:CAE41183.1" FT misc_feature 222346..222432 FT /note="Signal peptide predicted for BP0880 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.978) with cleavage site FT probability 0.297 between residues 29 and 30" FT variation 224585..224608 FT /note="(GCGCCGGC)3 in pertussis;(GCGCCGGC)2 in FT parapertussis and bronchiseptica" FT CDS 225442..226794 FT /transl_table=11 FT /locus_tag="BP0882" FT /product="conserved hypothetical protein" FT /note="Similar to Methanothermobacter thermautotrophicus FT conserved protein Mth965 TR:O27046 (EMBL:AE000870) (452 aa) FT fasta scores: E(): 2.8e-21, 27.912% id in 455 aa, and to FT Agrobacterium tumefaciens Agr_l_2924p TR:AAK90029 FT (EMBL:AE008346) (448 aa) fasta scores: E(): 2e-24, 29.899% FT id in 398 aa" FT /db_xref="GOA:Q7VZL9" FT /db_xref="InterPro:IPR005656" FT /db_xref="UniProtKB/TrEMBL:Q7VZL9" FT /protein_id="CAE41184.1" FT /translation="MNITQEIAKRVVQTSIRDLPADAVGYSETLAMSALGAMAAGHRSA FT GGREIVDYVKSAGGAAQATVLGHGLKTSMEMAGLANGTFAHATEYEDDSFPEAVSSYTL FT FPAIFAVAEHAQASGARVVEAFAAGYEAQARIGLACRQARRNGFMVLSLAGSIGCAASA FT AKLLGLDERQTTMALSLAASQGAGIGYQTGSMAHIVEMGFAARNGIAAALMAAQGMTGQ FT PDVLEAPRGLMNMITGDQVEAPAAIIEHWGRPYRLMEIGIKSYPCCYHLQRIIETTVDL FT RHAEGLAAADIEEISVEVNAFFPTVVQHMEPHDEIEAQFSLPHVLAIAMLEDQVVPAGF FT SQARIDDAAFQAFRRKVRQVVREDWGWTPTGWTPRITYRLADGRVIVREPEQARGQPPA FT LLTFDQCVPKYLGCVQGIYPEQQVERSIALLRGLAGLDSVAELMRCLATPA" FT CDS 226823..227344 FT /transl_table=11 FT /locus_tag="BP0883" FT /product="biotin carboxyl carrier protein" FT /note="Similar to Glycine max acetyl-CoA carboxylase AccB-1 FT TR:AAF80463 (EMBL:AF162283) (262 aa) fasta scores: E(): FT 1.8e-07, 33.939% id in 165 aa, and to Synechococcus sp FT biotin carboxyl carrier protein accB TR:Q54761 FT (EMBL:U59235) (158 aa) fasta scores: E(): 5.9e-12, 41.358% FT id in 162 aa. Also similar to BP2997, 41.333% identity FT (44.928% ungapped) in 150 aa overlap." FT /db_xref="GOA:Q7VZL8" FT /db_xref="HSSP:1A6X" FT /db_xref="InterPro:IPR000089" FT /db_xref="UniProtKB/TrEMBL:Q7VZL8" FT /protein_id="CAE41185.1" FT /translation="MLVVKTKFSDLTHEDIDRILEIVNRVDDIDLQIQVDGLGLRVRKG FT NVGAPVAPPAVSAPAAAEAPAPAPSPAPAAQPAAAPAAAPAAPAAARQDLLSITAPMIG FT RFYAKPSPNDPAFVALGSQVGPDDSVCILEVMKLFNTVKAGVAGEIVEILVQEGDMVEE FT GDVLFRVKPQ" FT misc_feature 227108..227332 FT /note="HMMPfam hit to PF00364, Biotin-requiring enzyme" FT CDS 227341..228795 FT /transl_table=11 FT /locus_tag="BP0884" FT /product="probable carboxylase" FT /note="Similar to Methanococcus jannaschii pyruvate FT carboxylase subunit B PycB or Mj1231 SW:PYCB_METJA (Q58628) FT (567 aa) fasta scores: E(): 5.8e-52, 35.685% id in 482 aa, FT and to Pyrococcus horikoshii 571aa long hypothetical FT oxaloacetate decarboxylase alpha chain ph0834 TR:O58564 FT (EMBL:AP000003) (571 aa) fasta scores: E(): 3.8e-49, FT 38.073% id in 436 aa" FT /db_xref="GOA:Q7VZL7" FT /db_xref="InterPro:IPR000891" FT /db_xref="UniProtKB/TrEMBL:Q7VZL7" FT /protein_id="CAE41186.1" FT /translation="MSRRIGIIDTTLRDAQQCLWATRMTAGMMDPIAQALDEAGFDMID FT FMAPVQFDVCVRYLREDPFEKARHFRKRFRNTPMRSYCRSKSLVGFSMVPDDMVELWID FT CLAANGFSAVGTLDSLLDVDNMKVSVRRAKKIGIKSIGALVFCESPLHTDALYAGTAAE FT LVRCGVDGIMLKDSGALLTIERIRTLIPALRAAVGDIPIEVHSHSNTGLVQRVYLDAAD FT LGIDQLHTSIAPLAGGVAQPSIQNMTRNLAQRGYRTDVDMARVEEISAYLHRLAARYDF FT PLGKPMEYDEFHYRHQMPGGMTENWRFQLRQAGLENRFEEILEEIGRVREDLAWPIMVT FT PFSQIIGVQAMLNVVNGERYRAVPDEVKMYALGHFGRLLGPVEPNALDRIVANGSPDVG FT LTPQPKDPALPGLRKANPGMTDEELLLRYMFPADDVEATLGCKPLKLTVPAGGPIVRLI FT EEILPRAGIRHFELRSQSEHISFTRP" FT misc_feature 227371..228192 FT /note="HMMPfam hit to PF00682, HMGL-like" FT misc_feature 227878..227907 FT /note="ScanRegExp hit to PS00339, Aminoacyl-transfer RNA FT synthetases class-II signature 2." FT misc_feature 228220..228744 FT /note="HMMPfam hit to PF02436, Conserved carboxylase FT domain" FT CDS 228812..229078 FT /transl_table=11 FT /locus_tag="BP0885" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti Mlr4612 protein Mlr4612 FT TR:Q98DP4 (EMBL:AP003004) (122 aa) fasta scores: E(): 3, FT 29.487% id in 78 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VZL6" FT /protein_id="CAE41187.1" FT /translation="MPRRIRMTQPAASSHAVIVMYDAPAELDAWMHGDHYREVLATPGV FT TGVRRYEVLDGPQACRKYLAVIETDDLDATLAWRDSEAGARSQ" FT CDS 229250..230059 FT /transl_table=11 FT /locus_tag="BP0886" FT /product="conserved hypothetical protein" FT /note="Similar to Mycobacterium tuberculosis CDC1551 FT conserved hypothetical protein Mt2360 TR:AAK46645 FT (EMBL:AE007078) (307 aa) fasta scores: E(): 2e-09, 25.498% FT id in 251 aa, and to Agrobacterium tumefaciens Agr_c_2623p FT TR:AAK87214 (EMBL:AE008068) (291 aa) fasta scores: E(): FT 6e-07, 24.413% id in 213 aa" FT /db_xref="GOA:Q7VZL5" FT /db_xref="InterPro:IPR006992" FT /db_xref="UniProtKB/TrEMBL:Q7VZL5" FT /protein_id="CAE41188.1" FT /translation="MFRTAMHYPRHNLTFKGARSAWLEDVGLLFEEMDSAGIRYGVAMG FT RASSGAGNLGGVANQDIVDLLATYPDRFLGFLGVDLDNIAGSLAEIRELAGAPGVKEIS FT IEPGSARVPRWSDDKTLDPVYELALELKLPVSISLSGLLSALAGHDITWSSPVSIQRVA FT QRYRDLKIVVSHAAWPYADEMVVVALACPNIYVSPDLYASTRGMICADSYVKGANMFLE FT DRTLFGTAYPVKDIQDSLRDFLQLGWREDIIHKVLWTNAARLLGVDK" FT CDS 230085..231140 FT /transl_table=11 FT /locus_tag="BP0887" FT /product="conserved hypothetical protein" FT /note="Similar to Arabidopsis thaliana induced upon FT wounding stress TR:Q39171 (EMBL:X99793) (386 aa) fasta FT scores: E(): 9.1e-20, 30.458% id in 371 aa, and to FT Arabidopsis thaliana hypothetical 44.2 kDa protein T22a6.50 FT or At4g24220 TR:Q9STX2 (EMBL:AL078637) (388 aa) fasta FT scores: E(): 6.2e-26, 31.892% id in 370 aa" FT /db_xref="GOA:Q7VZL4" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VZL4" FT /protein_id="CAE41189.1" FT /translation="MKRTALIAGPYGIVGNALVQHLARDAAWDVVTISRRQEAALPGVR FT HIAADLLDAAQAEAALAAFPGITHVFYCAYAPRPTLGEEAAPNLAMLANLVSAVDRHAR FT GLERVVLVHGTKWYGNHLGPFRTPAREDDARHCPPNFYYDQQDWIAARQRESGRWSWTA FT FRPHGIFGYALGSPMNHLMALSLYASVMKAVATPLKFPGTPAAFAALNQCTDARLLARA FT MAWSVDVAACENEAFNFHNGEPERWANLWPAVAEAFGMQAGGVQQIRLAAMMPANEAAW FT QAICQRQGLRHFPLEAYVNWSFADWVYSNGFDQVCSLYKLRRAGWTEILLFDDMLKSML FT SDLRQRKLLPA" FT CDS 231153..231944 FT /transl_table=11 FT /locus_tag="BP0888" FT /product="GntR-family transcriptional regulator" FT /note="Similar to Bacillus subtilis hypothetical FT transcriptional regulator YurK SW:YURK_BACSU (O32152) (242 FT aa) fasta scores: E(): 2.1e-15, 30.472% id in 233 aa, and FT to Deinococcus radiodurans transcriptional regulator, GntR FT family dra0211 TR:Q9RYU6 (EMBL:AE001863) (279 aa) fasta FT scores: E(): 3.7e-12, 29.046% id in 241 aa" FT /db_xref="GOA:Q7VZL3" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VZL3" FT /protein_id="CAE41190.1" FT /translation="MAQMKDNNVSNRATLVLYENRSIPLYRMIKEELIRFVQKKGIKSG FT MALPGDNELASQFGVSVGTVRRAIAELVSERIVIRQQGRGTFLAPYDTSRMLNSFWHIE FT RRDGVVDVPLVSTHGFSQASATEEVAQKLALQPGDPVFVIKNSMTMQGTPVLLDTIYVP FT VRTFEGLTREKLSARDATIYDFYREQYGINIVKTIDRVSATVADKDTAKRLGCKLGASM FT LRILRVAYSFGDTPIEYRCSLLDSENHEYVDVTGGDTSRYG" FT misc_feature 231237..231416 FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT misc_feature 231297..231362 FT /note="Predicted helix-turn-helix motif with score 1399 FT (+3.95 SD) at aa 49-70, sequence PGDNELASQFGVSVGTVRRAIA" FT CDS 231977..233347 FT /transl_table=11 FT /gene="accC" FT /gene_synonym="fabG" FT /locus_tag="BP0889" FT /product="biotin carboxylase" FT /EC_number="6.3.4.14" FT /note="Similar to Escherichia coli biotin carboxylase AccC FT or FabG or B3256 SW:ACCC_ECOLI (P24182) (449 aa) fasta FT scores: E(): 9.6e-86, 54.018% id in 448 aa, and to Anabaena FT sp biotin carboxylase AccC SW:ACCC_ANASP (Q06862) (447 aa) FT fasta scores: E(): 5.9e-93, 56.629% id in 445 aa" FT /db_xref="GOA:Q7VZL2" FT /db_xref="HSSP:1BNC" FT /db_xref="InterPro:IPR013817" FT /db_xref="UniProtKB/TrEMBL:Q7VZL2" FT /protein_id="CAE41191.1" FT /translation="MKLKKVLIANRGEIALRIIRACREMDIRTVQVYSSADEDSLPVRL FT ADEAAPIGGPEPSASYLNIAALIAAAREHGCDAIHPGYGFLSENEDFAQACIDAGIVFI FT GPDPGAIRMMGDKAQARKIAKEAGVPIVPGSPEPVSDVEEAIRVAREVGYPLLVKAAAG FT GGGRGMRVIQGEAQLREGLERASMEAKSAFGDGSVYIERYISPVRHVEIQVFGDGEDVI FT HLGERECSIQRRHQKLLEESPSPVLSDETRQRMGEAACALARAVKYRGAGTLEFVMDGK FT SGEFFFIEMNTRIQVEHPVTETVTGVDLVRLQLAVAAGGRLGLRQQDIVMKGHAIECRI FT NAEDPQKAFMPSPGTVNDIRLPSGPGVRMDSHVYRGYKLPPYYDSLLGKLIVWDESREK FT AIARMLRALGELEIVGVKTTKEFHERLMRDEDFIAGNVSTQFVKEKLYADHPMCHLL" FT misc_feature 231989..233092 FT /note="HMMPfam hit to PF00289, Carbamoyl-phosphate synthase FT L chain, N-terminal domain" FT misc_feature 232436..232480 FT /note="ScanRegExp hit to PS00866, Carbamoyl-phosphate FT synthase subdomain signature 1. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 232835..232858 FT /note="ScanRegExp hit to PS00867, Carbamoyl-phosphate FT synthase subdomain signature 2." FT misc_feature 233333..233344 FT /note="ScanRegExp hit to PS00294, Prenyl group binding site FT (CAAX box)." FT CDS 233363..234442 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0890" FT /product="putative acyl-CoA carboxylase (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Saccharopolyspora erythraea FT propionyl-CoA carboxylase beta chain PccB SW:PCCB_SACER FT (P53003) (546 aa) fasta scores: E(): 4.3e-33, 34.146% id in FT 369 aa, and to Pyrococcus horikoshii 522aa long FT hypothetical methylmalonyl-CoA decarboxylase alpha chain FT Ph1287 TR:O59018 (EMBL:AP000005) (522 aa) fasta scores: FT E(): 4e-42, 38.108% id in 370 aa" FT /db_xref="PSEUDO:CAE41192.1" FT misc_feature 233402..234430 FT /note="HMMPfam hit to PF01039, Carboxyl transferase domain" FT repeat_region 234422..234453 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 234422..235055 FT CDS 234524..235474 FT /transl_table=11 FT /locus_tag="BP0891" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7VZL1" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7VZL1" FT /protein_id="CAE41193.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKRRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 234782..234847 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 234905..235438 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region 235053..235474 FT repeat_region complement(235443..235474) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 235527..235748 FT /transl_table=11 FT /locus_tag="BP0892" FT /product="hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VZL0" FT /protein_id="CAE41194.1" FT /translation="MGDVMQRGELAYWLNVVVENGEPGAPQIPVPEQFVTALTTLRCIE FT RNAQGQLVVTEKGRLALHMEEPGALHRQ" FT CDS 235908..236120 FT /transl_table=11 FT /locus_tag="BP0893" FT /product="hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VZK9" FT /protein_id="CAE41195.1" FT /translation="MQHRDQEVLIDVSTAAMDTGGYGVLLTVTAEGGTEVDAAFSYLGT FT CASLDEARDRAEAFAQDWLRENIYR" FT CDS 236219..237358 FT /transl_table=11 FT /gene="pmi" FT /locus_tag="BP0894" FT /product="putative mannose-6-phosphate isomerase" FT /EC_number="5.3.1.8" FT /note="Similar to Rhizobium meliloti mannose-6-phosphate FT isomerase Pmi or R02982 or Smc03111 SW:MANA_RHIME (P29954) FT (387 aa) fasta scores: E(): 4.5, 27.763% id in 389 aa, and FT to Caulobacter crescentus mannose-6-phosphate isomerase FT Cc3617 TR:Q9A2E8 (EMBL:AE006020) (386 aa) fasta scores: FT E(): 1.3e-13, 32.031% id in 384 aa" FT /db_xref="GOA:Q7VZK8" FT /db_xref="InterPro:IPR010819" FT /db_xref="UniProtKB/TrEMBL:Q7VZK8" FT /protein_id="CAE41196.1" FT /translation="MHARRTPMSAASFHTDLPALVAQLRQHFNTVIVPLWLERGFDAGL FT GLPCEALDAHGAPLPAQRYRAMACARQLYVFSRTDGAAAAAHAERLFSSLLRYFQNAAH FT GGWRHSVDAQGQPLDDTQDLYTHAFVVFACAAYFARTRDARARKTLLATVDVIEQRFRT FT RQGLYVAALSADWAQVVRGPAQNPVMHLTEAYLAAAGVVEPAWFAQTLGRLTQDVASTF FT LYAPRLCIAEEPLDQPPRFEPGHQFEWYSLLHGAPDLFGDLELGSALQRGCAWVRQHGV FT DAHSHGVAAVLDESGAVRDATQRIWAQTEYARYLALSGQWPELATQLRAFQARFLHQDG FT WHECLDAQGNVSRADMPSTTPYHLATCYAALEDALAGQG" FT CDS 237455..237670 FT /transl_table=11 FT /locus_tag="BP0895" FT /product="conserved hypothetical protein" FT /note="Similar to Halobacterium sp 50S ribosomal protein FT l44E Rpl44e or Vng0551G TR:Q9HRT6 (EMBL:AE005006) (61 aa) FT fasta scores: E(): 8.8, 39.024% id in 41 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VZK7" FT /protein_id="CAE41197.1" FT /translation="MSVMCPACQAINAGSSGVEPHPRLGHQGFTNPSQKGREANREDHF FT RCIECGAKWLRETDRWGVDLGFRLAP" FT CDS 237864..238115 FT /transl_table=11 FT /locus_tag="BP0896" FT /product="hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VZK6" FT /protein_id="CAE41198.1" FT /translation="MVQKVLNGFAVVAFATQPEHGMPPRAFIQTAPMDGAGQAEPQVFE FT IFLARRFRSAVEAMSAARNALDRVVSVDQDGVPAPLPD" FT repeat_region 238125..238156 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 238125..238202 FT repeat_region 238198..239178 FT CDS 238228..239178 FT /transl_table=11 FT /locus_tag="BP0897" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7VZK5" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7VZK5" FT /protein_id="CAE41199.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWTYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 238486..238551 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 238609..239142 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(239147..239178) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(239175..239558) FT /transl_table=11 FT /locus_tag="BP0898" FT /product="putative ferredoxin" FT /note="Similar to Pseudomonas spCA10 ferredoxin component FT of carbazole 1,9a-dioxygenase CaraC TR:O32475 (EMBL:D89064) FT (107 aa) fasta scores: E(): 0.16, 28.736% id in 87 aa, and FT to Pseudomonas aeruginosa hypothetical protein Pa4711 FT TR:Q9HV87 (EMBL:AE004885) (115 aa) fasta scores: E(): FT 3.9e-10, 35.965% id in 114 aa" FT /db_xref="GOA:Q7VZK4" FT /db_xref="InterPro:IPR017941" FT /db_xref="UniProtKB/TrEMBL:Q7VZK4" FT /protein_id="CAE41200.1" FT /translation="MTDSTPAVRVCAAADLVDGGLGVKVPVTDGAGQASAFFVRYRGQV FT YGYLNRCAHVGVELDWENSFFTRAGDLIMCARHGATYEPDTGLCIGGPCRNGRLTALQV FT DERPDAGGMAVYWLPSGKIQPRG" FT misc_feature complement(239277..239471) FT /note="HMMPfam hit to PF00355, Rieske [2Fe-2S] domain" FT CDS complement(239613..241430) FT /transl_table=11 FT /locus_tag="BP0899" FT /product="ABC transporter, ATP-binding protein" FT /note="Similar to Rhizobium loti ABC transporter, FT ATP-binding protein Mlr7818 TR:Q984W3 (EMBL:AP003012) (627 FT aa) fasta scores: E(): 1.9e-115, 56.324% id in 593 aa, and FT to Rhizobium meliloti probable ABC transporter ATP-binding FT transmembrane protein Smc00550 TR:CAC45699 (EMBL:AL591786) FT (627 aa) fasta scores: E(): 5.7e-117, 57.022% id in 591 aa" FT /db_xref="GOA:Q7VZK3" FT /db_xref="HSSP:1MV5" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VZK3" FT /protein_id="CAE41201.1" FT /translation="MMPSPSPTPAGRNSLDTLRTLAPFLWPADRPGLKARVVIAILCLL FT AAKAAVVYVPILYKSAVDQLGGGAPGAVTVPLGLILAYGAARVLSLLFSELRDAVFARV FT GQHAIRAVGLQIFLHLHALALRFHLARQTGGLTRAIERGTKGIQTLLTFLLFNVLPTLF FT EIGLVCAVLWKMFDGWLALATGATVTLYLAYTLVVTEWRTRFRRQMNETDSEANTKAVE FT SLLNYETVKYFGNEEHEAQRYDASLRRYERAAVRSQVSLSILNIGQAVIISAGLTLVMW FT MAARGIAQGRYTLGDFVLVNTYLLQLYDPLSFFGFIYREIKQALIDMERMFELLGEGRE FT IADPPGALALRLEGGAVEFREVYFGYDPRRPILKGVSFRIPAGKTVAVVGTSGAGKSTL FT ARLLFRFYDADRGAILVDGQDVRGVTQASLRAAIGVVPQDTVLFNDTIHYNIAYGRPGA FT SDGEVQAAARLAHIHDLIMAMPDGYRTMVGERGLKLSGGEKQRVAIARTLLKNPSIFLF FT DEATSALDTHTEREIQANLREVSQGRSTLIIAHRLSTIADADEIIVLGDGRVVERGRHQ FT ALLAQGGIYAGMWARQQEAARPAAVALDD" FT misc_feature complement(239730..240284) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(239907..239951) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(240240..240263) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(240498..241322) FT /note="HMMPfam hit to PF00664, ABC transporter FT transmembrane region." FT misc_feature complement(join(240588..240653,240837..240902, FT 240915..240980,241044..241109,241170..241235, FT 241257..241322)) FT /note="6 probable transmembrane helices predicted for FT BP0899 by TMHMM2.0 at aa 36-58, 65-87, 107-129, 150-172, FT 176-198 and 259-281" FT CDS 241577..242404 FT /transl_table=11 FT /locus_tag="BP0900" FT /product="probable oxidoreductase" FT /note="Similar to Corynebacterium SP 2,5-diketo-D-gluconic FT acid reductase TR:P06632 (EMBL:M12799) (278 aa) fasta FT scores: E(): 5.9e-54, 53.008% id in 266 aa, and to FT Streptomyces coelicolor putative oxidoreductase Sc4b5.01C FT TR:Q9ZBW7 (EMBL:AL034443) (277 aa) fasta scores: E(): FT 1.7e-61, 58.303% id in 271 aa" FT /db_xref="GOA:Q7VZK2" FT /db_xref="HSSP:1HW6" FT /db_xref="InterPro:IPR020471" FT /db_xref="UniProtKB/TrEMBL:Q7VZK2" FT /protein_id="CAE41202.1" FT /translation="MAQVPVLKLNDGNAMPQLGLGVWQVPNDQAAASVKAALAAGYRSI FT DTAAIYGNEAGVGEGLRAAGVARKDLFVTTKLWNDRHGYDEAQRAMDESLRKLGLAYVD FT LFLIHWPVAGSDKFVDAWRAMVAMKEDGRARSIGVSNFTIANLRRLVDETGVVPAVNQV FT ELHPGFAQRELRAFHAEQGIATESWSPLGQGAVMHDATLAGIAARHGKSAAQVTLRWHL FT QNGLIVIPKSVTPARIQANIDVFDFELSADEMADIDALPEGPRLGPDPATFTG" FT misc_feature 241601..242371 FT /note="HMMPfam hit to PF00248, Aldo/keto reductase family" FT misc_feature 241697..241750 FT /note="ScanRegExp hit to PS00798, Aldo/keto reductase FT family signature 1. Confirmed by InterPro eMOTIF pattern FT match." FT misc_feature 241949..242002 FT /note="ScanRegExp hit to PS00062, Aldo/keto reductase FT family signature 2." FT misc_feature 242261..242308 FT /note="ScanRegExp hit to PS00063, Aldo/keto reductase FT family putative active site signature." FT CDS 242450..243430 FT /transl_table=11 FT /locus_tag="BP0901" FT /product="putative oxidoreductase" FT /note="Similar to Streptomyces coelicolor putative FT aldo/keto reductase Scf81.28C TR:Q9RJC4 (EMBL:AL133171) FT (307 aa) fasta scores: E(): 6.4e-83, 66.667% id in 309 aa, FT and to Escherichia coli hypothetical oxidoreductase YajO or FT b0419 SW:YAJO_ECOLI (P77735) (324 aa) fasta scores: E(): FT 9.9e-80, 61.846% id in 325 aa" FT /db_xref="GOA:Q7VZK1" FT /db_xref="HSSP:1LQA" FT /db_xref="InterPro:IPR020471" FT /db_xref="UniProtKB/TrEMBL:Q7VZK1" FT /protein_id="CAE41203.1" FT /translation="MEYVRLGSTGLKVSRLCLGCMTYGEPARGNHAWTLDETQSRPFFR FT QALDAGINFFDTANSYSDGTSEEFLGRALREYVPRDEVVVATKVFFPLRKEPNSGGLSR FT KAIMREIDASLRRLGTDYVDLYQIHRWDYDTPIEETLQALHDVVKAGKARYIGASSMHA FT WQFAKALYLADRHGWTRFSTMQNHYNLLYREEEREMLKLCCAEGVGVLPWSPLARGRLT FT RDWAEGSARADTDDVLKRLYSATEQADRGVIDAVGEVAAQRGVSRAQVAMAWLLRQPAV FT TAPIVGASKPRHLEDAVAALALRLTDEEAARLEAAYAPHPVAGFA" FT misc_feature 242612..242920 FT /note="HMMPfam hit to PF00248, Aldo/keto reductase family" FT CDS complement(243427..243639) FT /transl_table=11 FT /locus_tag="BP0902" FT /product="putative membrane protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc2926 TR:Q9A4B1 (EMBL:AE005957) (70 aa) fasta FT scores: E(): 0.0073, 44.231% id in 52 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VZK0" FT /protein_id="CAE41204.1" FT /translation="MTPRQHFYFVWGMPIVLGALSVFGLLAALLGTGVWHWASWLALAW FT LLVVIARFWIVPRERRPAPGPRRGG" FT misc_feature complement(join(243472..243537,243553..243618)) FT /note="2 probable transmembrane helices predicted for FT BP0902 by TMHMM2.0 at aa 7-29 and 34-56" FT misc_feature complement(243559..243639) FT /note="Signal peptide predicted for BP0902 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.899) with cleavage site FT probability 0.648 between residues 27 and 28" FT CDS complement(243636..244817) FT /transl_table=11 FT /locus_tag="BP0903" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1909 TR:Q9I2J5 (EMBL:AE004617) (383 aa) fasta FT scores: E(): 1.4e-72, 52.910% id in 378 aa, and to FT Caulobacter crescentus hypothetical protein Cc2927 FT TR:Q9A4B0 (EMBL:AE005957) (394 aa) fasta scores: E(): FT 2.4e-53, 50.681% id in 367 aa" FT /db_xref="InterPro:IPR005625" FT /db_xref="UniProtKB/TrEMBL:Q7VZJ9" FT /protein_id="CAE41205.1" FT /translation="MSTASTIKTWYLVHKWTSLVCTLFLLIICITGLPLVFHHEIEHLL FT DEGKPVAQVAEGTPDASLDTIVARAHALYPDEYIDYVFLDDEEPQVYVGFTPKLGQAVE FT AGHAVRVDARTGDILHDGPKYSADRFSFMGIMLALHVDLYAGLAGELFLGLMGLLFVIA FT IVSGVVLYGPFMKKLDFGTVRASRSNRLKWLDLHNLLGIVTLVWAFVVGLTGVINELST FT PLFRLWQQTELQAMTAPYQGKPVPRPAELSAPQRAADTALAAVPDRALTGISYPGNAFG FT SPQHYIVWLKGNTPLTSKLNTPVLVDGKTGELAAVARMPWYLTVLELSRPLHFGDYGGM FT PLKIIWALLDLITIVVLGSGLYLWLARRKATDARVAELVRRHQQAAEPQRTPA" FT misc_feature complement(join(243720..243785,244164..244229, FT 244293..244358,244704..244769)) FT /note="4 probable transmembrane helices predicted for FT BP0903 by TMHMM2.0 at aa 16-38, 153-175, 196-218 and FT 344-366" FT CDS 244981..245715 FT /transl_table=11 FT /gene="pphA" FT /gene_synonym="prpA" FT /locus_tag="BP0904" FT /product="serine/threonine protein phosphatase 1" FT /EC_number="3.1.3.16" FT /note="Similar to Escherichia coli serine/threonine protein FT phosphatase 1 PphA or PrpA or B1838 SW:PRP1_ECOLI (P55798) FT (218 aa) fasta scores: E(): 1.9e-18, 34.821% id in 224 aa, FT and to Bacteriophage lambda serine/threonine protein FT phosphatase SW:PP_LAMBD (P03772) (221 aa) fasta scores: FT E(): 1.2e-18, 33.803% id in 213 aa" FT /db_xref="GOA:Q7VZJ8" FT /db_xref="HSSP:1G5B" FT /db_xref="InterPro:IPR004843" FT /db_xref="UniProtKB/TrEMBL:Q7VZJ8" FT /protein_id="CAE41206.1" FT /translation="MAPNLQYPAFLRLPRNPAGRDFAVGDIHGHFSRLEQALDECGFDP FT RRDRLFSVGDLIDRGPDSEAAVQWLAHPWFYAVQGNHEDYAIRHVRTGLVDQDNWRSYG FT GGWFLDAAPERQRAWAGAFAALPVVIEVATQAGPVGLLHADCPVRDWSRLEYFLQARPK FT RARSVCQWSRERLASGDARGVDGIRAVVAGHTPVSEPVVLGNVYHIDTQGWRPHGYFTL FT FDLCTLSAWPRPAQAGAPAARG" FT CDS complement(245717..248329) FT /transl_table=11 FT /gene="mrcA" FT /gene_synonym="ponA" FT /locus_tag="BP0905" FT /product="penicillin-binding protein 1A" FT /EC_number="2.4.2.-" FT /note="Similar to Escherichia coli penicillin-binding FT protein 1A MrcA or PonA or B3396 SW:PBPA_ECOLI (P02918) FT (850 aa) fasta scores: E(): 2.1e-61, 37.243% id in 827 aa, FT and to Pseudomonas aeruginosa penicillin-binding protein 1A FT MrcA or PonA or Pa5045 SW:PBPA_PSEAE (Q07806) (822 aa) FT fasta scores: E(): 3.7e-62, 38.882% id in 805 aa" FT /db_xref="GOA:Q7VZJ7" FT /db_xref="InterPro:IPR001460" FT /db_xref="UniProtKB/TrEMBL:Q7VZJ7" FT /protein_id="CAE41207.1" FT /translation="MNTSSQSTKPPPPGGPRLFRKSLLIKAGVAVAGLGAAGALALGLA FT LALAWPSLPELHAMTDYRPRVPLRVYTADGVLIGEFGEEHRNVLRADEIPQVMKQAVLA FT AEDDRFYQHGGVDWMGVARAVLTNMVKLSKSQGGSTITMQVARNFYLSSEKTYSRKFYE FT LLLTYKIEAELTKDQILELYMNQIYLGHRSYGFAAASRTYFGKPLSEVTPAEAAMLAGI FT PKAPSRANPLASLPRATARQQYVLGRMQTLGYLTPEQVQEARAQTIVLRGSEGGPAHGF FT AIHGEYPAELVRQLMYSIYQDGAYTHGIDVYTTIDSKAQQAAYRAVRAGVLDYTRRAPY FT PGPQAQIDLPDGIEQDAQAFDEILDSVQDQAPDSDDLLAGVVLSTSPTSVTVARTATDI FT VTVDDKKALAIVARALAPNAKDALRIRRGSVVYLHKNGDTWEIINMPALQAALVSMSPA FT DGAISAMIGGFDFHRGSFNRVTQAWRQPGSTIKPFVYAAALERGMTPATQVNDQPFMLT FT AEQTGSRAWEPKNDGNRYEPMLTLREGLYRSKNMVSIRILQAIGPEYARDYLTRFGFEQ FT ARWPAMLPLALGAGGATPLQVANAYSVFANGGYRVTPYLIDRVTDRSGKVLMQTTPVKA FT GDETARAIDPRTAWVIDDIMHDTTTKGTAARVYRTLKRNDIAGKTGTTNDAVDVWFSGY FT TAQQTTTVWMGFDQPRSLGTNEFGSGLALSTWLDYEQPTLKGTPQAPRAPRPQGLIVDN FT GEYYFSEFPPGQAVAALDLSSGDELTDFLNNMRPSDGAPARVQQPGQPPAGSSSGGQPP FT IPPIPVPRADLPDGQATPASLPLGAPPAAASAPPAAPAHGGASAQPVTLPGRVGATPL" FT misc_feature complement(246146..247072) FT /note="HMMPfam hit to PF00905, Penicillin binding protein FT transpeptidase domain" FT misc_feature complement(247622..248128) FT /note="HMMPfam hit to PF00912, Transglycosylase" FT misc_feature complement(248183..248248) FT /note="1 probable transmembrane helix predicted for BP0905 FT by TMHMM2.0 at aa 51-73" FT CDS complement(248465..250378) FT /transl_table=11 FT /locus_tag="BP0906" FT /product="putative peptidase" FT /note="Similar to Rickettsia conorii FT acylamino-acid-releasing enzyme Rc0603 TR:AAL03141 FT (EMBL:AE008621) (676 aa) fasta scores: E(): 2.3e-62, FT 34.783% id in 621 aa, and to Caulobacter crescentus prolyl FT oligopeptidase family protein Cc3723 TR:Q9A243 FT (EMBL:AE006030) (667 aa) fasta scores: E(): 3.4e-42, FT 30.653% id in 659 aa" FT /db_xref="GOA:Q7VZJ6" FT /db_xref="InterPro:IPR001375" FT /db_xref="UniProtKB/TrEMBL:Q7VZJ6" FT /protein_id="CAE41208.1" FT /translation="MLTLIKRTVLAAGLIGTTLGAAAQPPRAYPLKDFFRNPERGYFRL FT ADDGKTLGFMQPVSIDGQPPRMNIYVQALADGVPAGEPRKLTSETARDISNFFWKGDDT FT VLYQKDFGGDENFHVLAVNARTGQVADLTPYEGVRASIEDDLPDDPDHVLISHNRRDPQ FT VFDVYRVNVRTGAAELVAQNPGNVVGWQTDHAGKVRAAITSDGLNTTLLYRDDEAAPFR FT PLITTDYRVSVSPAFFTFDDRKLYALSNRGRDKLALVVIDPATPDVEQPVFEPDEVDLD FT AAGYSRKRKVLTVASYQTDKPRHRFFDAETEALYARLARALPGYDFALQGWNRDEDTFI FT VAAYNDRTPGSRYLYDARRDSLHKLADINPAIPEADMAPVRPVSYQSRDGLTIHGYLTL FT PAGRAPRNLACIVNPHGGPWARDGWGYNPEVQFLANRGFCVLQMNFRGSTGYGRKFWEA FT GFGQWGLKMQDDITDGVQWLIDQGIADPRRIGIYGGSYGGYATLAGVAFTPDLYAAAVD FT YVGVSNLFTFMNTIPPYWKPLLAKMQDMVGDPVRDKARLEATSPALHVDRIKTPLFIAQ FT GAKDPRVNKAESDQVVQALRQRGVEVEYMVKDNEGHGFHNDENKFEFYAAMEKFFTEHL FT KP" FT misc_feature complement(248879..249076) FT /note="HMMPfam hit to PF00326, Prolyl oligopeptidase FT family" FT misc_feature complement(250310..250378) FT /note="Signal peptide predicted for BP0906 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.925 between residues 23 and 24" FT CDS join(250538..250942,250942..250968,250971..250991) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0907" FT /product="putative lipoprotein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have two frameshift FT mutations, following codons 156 and 144. The frameshift FT occurs within dimeric tracts of (G)2 and (TC)2, FT respectively. The sequence has been checked and believed to FT be correct. No significant database matches" FT /db_xref="PSEUDO:CAE41209.1" FT misc_feature 250559..250591 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT variation 250942..250943 FT /note="(G)2 in pertussis; (G)3 in parapertussis and FT bronchiseptica" FT variation 250967..250970 FT /note="(TC)2 in pertussis; (TC)1 in parapertussis and FT bronchiseptica" FT CDS complement(250994..251404) FT /transl_table=11 FT /locus_tag="BP0908" FT /product="conserved hypothetical protein" FT /note="Similar to Halobacterium halobium hypothetical 15.6 FT kDa protein in phr 5'region SW:YPHR_HALHA (P20378) (151 aa) FT fasta scores: E(): 2e-08, 29.688% id in 128 aa, and to FT Halobacterium sp Vng1336C TR:Q9HQ45 (EMBL:AE005055) (151 FT aa) fasta scores: E(): 2e-08, 29.688% id in 128 aa" FT /db_xref="InterPro:IPR006683" FT /db_xref="UniProtKB/TrEMBL:Q7VZJ5" FT /protein_id="CAE41210.1" FT /translation="MSTPHTDFFGLTIPFMQLLGVVPEHSGNGTARTRLPARADLVNSR FT GDIHGGTLMSVLDFTLGAAIRGDTPEVGVATIDMNTSFMSPGRGDLVIETRCLRRGASI FT AFCKGEIRDSAGELVAKATATFKIIQRRPGGD" FT misc_feature complement(251018..251380) FT /note="HMMPfam hit to PF02584, Uncharacterized protein FT PaaI, COG2050" FT CDS 251502..252587 FT /transl_table=11 FT /gene="dinP" FT /locus_tag="BP0909" FT /product="DNA-damage-inducible protein p" FT /note="Similar to Escherichia coli DNA-damage-inducible FT protein P DinP or B0231 SW:DINP_ECOLI (Q47155) (351 aa) FT fasta scores: E(): 1.1e-46, 45.845% id in 349 aa, and to FT Neisseria meningitidis ImpB/MucB/SamB family protein FT Nma1661 or DinP TR:Q9JRG1 (EMBL:AL162756) (352 aa) fasta FT scores: E(): 1.3e-69, 56.358% id in 346 aa" FT /db_xref="GOA:Q7VZJ4" FT /db_xref="HSSP:1IM4" FT /db_xref="InterPro:IPR017963" FT /db_xref="UniProtKB/TrEMBL:Q7VZJ4" FT /protein_id="CAE41211.1" FT /translation="MSQLQRKIVHIDMDAFYASVEQRDNPALRGLPVVVAWTGPRSVVC FT AASYEARRYGVHSAMAAARAQRLCPDAVYVPPDFNRYREVSRQVRAIFARHTDLIEPLS FT LDEAYLDVTCNKLGLASATEVAQIIRRQIREETGLTASAGVAPNKFLAKIASDWNKPDG FT LFVIKPSRVLDFLQPLPVRKVPGVGKVMQARLEQLGIQTVGDLSRHSVAELEQRFGRYG FT VRLYELARGIDERAVQADQPAQQVSAETTFDTDLALEALGEALERLAAKVWEQGAKKGR FT IGRTTVLKLKTDRFRILTRSLTLMQPPGSAAELAAIARQLCTRVDLPAHTRYRLVGVGM FT SNFPDAQAEAPRQAELFGDAF" FT misc_feature 251532..252536 FT /note="HMMPfam hit to PF00817, impB/mucB/samB family" FT repeat_region 252584..252615 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 252584..253636 FT CDS 252686..253636 FT /transl_table= |