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EBI DbfetchID BX640412; SV 1; linear; genomic DNA; STD; PRO; 348171 BP. XX AC BX640412; XX DT 09-AUG-2003 (Rel. 76, Created) DT 23-OCT-2008 (Rel. 97, Last updated, Version 8) XX DE Bordetella pertussis strain Tohama I, complete genome; segment 2/12 XX KW complete genome. XX OS Bordetella pertussis OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Bordetella. XX RN [2] RP 1-348171 RA Sebaihia M.; RT ; RL Submitted (06-AUG-2003) to the EMBL/GenBank/DDBJ databases. RL Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute, RL Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail: RL ms5@sanger.ac.uk XX RN [3] RX DOI; 10.1038/ng1227 RX PUBMED; 12910271. RA Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E., RA Holden M.T., Churcher C.M., Bentley S.D., Mungall K.L., RA Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A., RA Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I., RA Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., RA Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., RA Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., RA Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., RA Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., RA Barrell B.G., Maskell D.J.; RT "Comparative analysis of the genome sequences of Bordetella pertussis, RT Bordetella parapertussis and Bordetella bronchiseptica"; RL Nat. Genet. 35(1):32-40(2003). XX DR EMBL-CON; BX470248. DR RFAM; RF00050; FMN. XX FH Key Location/Qualifiers FH FT source 1..348171 FT /organism="Bordetella pertussis" FT /strain="Tohama I" FT /mol_type="genomic DNA" FT /db_xref="taxon:520" FT CDS complement(52..921) FT /transl_table=11 FT /gene="bhuT" FT /locus_tag="BP0345" FT /product="putative hemin binding protein" FT /note="Similar to Yersinia enterocolitica hemin binding FT protein HemT TR:P74979 (EMBL:X77867) (279 aa) fasta scores: FT E(): 8.2e-29, 37.638% id in 271 aa, and to Yersinia pestis FT hemin-binding periplasmic protein HmuT precursor FT SW:HMUT_YERPE (Q56991) (279 aa) fasta scores: E(): 9.4e-29, FT 37.638% id in 271 aa" FT /db_xref="GOA:Q7VSQ6" FT /db_xref="InterPro:IPR002491" FT /db_xref="UniProtKB/TrEMBL:Q7VSQ6" FT /protein_id="CAE44677.1" FT /translation="MRQAMKRLLAWLLAMACAGAAAAAQTAPAQRVVTLGGTVTEIVYA FT LGQGGRLVGDDLSSLYPQAATQLPRIGYYRAVPVEGVLALEPDLVLASEQAGPPDAIER FT LKAVGVRVAVVSDQASVQSLHARIRAIAQALDAVPEGERLAAQLDAELARAEALPASGA FT RALLLMNRTGTPLGAGRDTAADLLLRLSGLANALAGQEGYKPLSAEALGALAPEVIVVT FT AASLAASGGLEKLRAQPGIAATPAAQRQCIVVMDDLLALGTGPRLPQAIRQLKETPCVA FT GHGAPPAR" FT misc_feature complement(148..840) FT /note="HMMPfam hit to PF01497, Periplasmic binding protein" FT misc_feature complement(835..900) FT /note="1 probable transmembrane helix predicted for BP0345 FT by TMHMM2.0 at aa 7-29" FT misc_feature complement(853..921) FT /note="Signal peptide predicted for BP0345 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.617 between residues 23 and 24" FT CDS complement(918..1964) FT /transl_table=11 FT /gene="bhuS" FT /locus_tag="BP0346" FT /product="putative hemin transport protein" FT /note="Similar to Yersinia pestis hemin transport protein FT HmuS SW:HMUS_YERPE (Q56990) (345 aa) fasta scores: E(): FT 1.1e-46, 42.486% id in 346 aa, and to Yersinia FT enterocolitica hemin transport protein HemS SW:HEMS_YEREN FT (P31517) (345 aa) fasta scores: E(): 1.2e-46, 43.413% id in FT 334 aa" FT /db_xref="GOA:Q7VSQ5" FT /db_xref="InterPro:IPR007845" FT /db_xref="UniProtKB/TrEMBL:Q7VSQ5" FT /protein_id="CAE44678.1" FT /translation="MTEPTFATRAAALRQRNDELAASQPGQRARNLAQALGVSEAEWIA FT AGCNGARVTALRGKPQAIFRDLGELGEVMALTRNDWCVHERHGRYEDIQAEGPVGLVLG FT PDIDLRVFFNCWASAWAVEQDGHTSLQFFDGAGVAVHKVYRTEATDGAAWEALVARYAG FT EPEWPEPQPYPPAADAAAVDDPAALRRDWLAMQDTHEFFPLLRRLKVGRLAALKAAGAD FT LAQQVPAETVEHMLTQAAASGLSIMCFVGNRGMIQIHTGPVEKLRRTGPWYNVLDPRFN FT LHLNTETVDSAWVVSKPTSDGWVTSLELYTAGGELIVQFFGERKPGKPELTAWRQLLSG FT LCGQPLAE" FT CDS complement(2000..4537) FT /transl_table=11 FT /gene="bhuR" FT /locus_tag="BP0347" FT /product="outer membrane heme receptor" FT /note="Previously sequenced as Bordetella pertussis outer FT membrane heme receptor BhuR TR:AAK38153 (EMBL:AY032627) FT (149 aa) fasta scores: E(): 2.7e-49, 100.000% id in 149 aa. FT Similar to Rhizobium meliloti putative iron transport FT protein Smc02726 TR:CAC46967 (EMBL:AL591790) (743 aa) fasta FT scores: E(): 4.6e-37, 37.630% id in 768 aa" FT /db_xref="GOA:Q7VSQ4" FT /db_xref="HSSP:1FEP" FT /db_xref="InterPro:IPR012910" FT /db_xref="UniProtKB/TrEMBL:Q7VSQ4" FT /protein_id="CAE44679.1" FT /translation="MRGALAACALAGTLAAAPAAAQPTAAPASAGARAWHIDAGPLGEA FT LARFADQAGITLLYDPAAVRGRASAGLQGVYSVPDGLARLLDGSGLDARQRGAGTYVLQ FT ALPAGPVAQLAPVTIEADGVRADPAWARTATRRELDARQVLDWSDIGKRVDPGVNYNRR FT TKSINIRGLDENRVVTRIDGIRLPWLDDGARGIQGGLNAVDFNTLSRLDVVRGADSSAA FT GSGALGGLADLRTLEPADLLRDGRRFGALAKSDYDSADASWGLNAALAGQVHDDTSWLL FT QAGTRNGHDLDNRADTGGYGSKRSQPSPEDYAQNNFLLKLQQRIDGGHRLGLTGEYFKR FT RADLDQMYQQGAGTSYQYGANRTHEETTRKRVSLDYQYNAPQAGAAIDSARAMVYWQRL FT RLDSSQDARRTRDGRAYARPGDPYFYGYPSGPYGRSNSIQESILGVNGELSSRFEGMVS FT QRVTIGGEWYGNRTEQYSDGYDNCPAIPPGTPAPMGPRLCDMLHTNQADMPRVKGSQWA FT IWAQDEIAFADGRYILTPSLRYDHYEQKPQQGGGYQNNPNAGALPPSSSGGRFSPKLLG FT TWKAREALTLYAQYGFGYRAPSATELYTNYGGPGTYLRVGNPSLKPETSKGWELGARLG FT DDQLGGAVSLFDNRYQNFIDKNVPLGKGSPQWQPAWDGQYPLGVTGLANRARVRIYGAE FT ASAHWRFAPNWRTWGSLAWAVGKDENTGQHLNSVPPLKAILGLGYQRDEWGIDAMLTAA FT TRRDDVQYPEASASARYADFQAPGYGVVDLSAYWRPAAVKGLQLQAGVFNLFDKKYWEA FT INVPTAGAIAIPRPLDWYNEPGRSVRVSLTYQY" FT misc_feature complement(2003..2371) FT /note="HMMPfam hit to PF00593, TonB dependent receptor FT C-terminal region" FT misc_feature complement(4475..4537) FT /note="Signal peptide predicted for BP0347 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.975 between residues 21 and 22" FT CDS complement(4745..5662) FT /transl_table=11 FT /gene="hurR" FT /locus_tag="BP0348" FT /product="heme uptake transmembrane sensor" FT /note="Similar to Escherichia coli protein FecR or B4292 FT SW:FECR_ECOLI (P23485) (317 aa) fasta scores: E(): 1e-22, FT 32.459% id in 305 aa, and to Pseudomonas aeruginosa FT probable transmembrane sensor Pa1911 TR:Q9I2J3 FT (EMBL:AE004617) (316 aa) fasta scores: E(): 2.4e-32, FT 41.118% id in 304 aa" FT /db_xref="GOA:Q7VSQ3" FT /db_xref="InterPro:IPR012373" FT /db_xref="UniProtKB/TrEMBL:Q7VSQ3" FT /protein_id="CAE44680.1" FT /translation="MAREAARWLVRLGSGQASADEIQACDHWRASHAEHERAWQRARRL FT TSMFDRIPPAVGQAALGRARDRRAMLKSLVALLAAPPAAWAALRGARNSGWLADLRTGT FT GETRTVALGPGTQLRLNTGTAVSLDDGSGLLSLRLHRGEIYLEADRPCRVLTRGGMIRT FT QAAHLWLRQDDADGLLGVVAGLAFWQGADNRTHSVAAGQRIAWHDGALQGAAQTLDGSP FT DWLRGVLRADAMRLDRFLRELSRYRPGTLRCDPRVAGLRLSGVFQLAHTDDILRALPAL FT LPVQLSYVTPYWITVGPRPAGATT" FT misc_feature complement(5606..5662) FT /note="Signal peptide predicted for BP0348 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.708) with cleavage site FT probability 0.708 between residues 19 and 20" FT CDS complement(5698..6207) FT /transl_table=11 FT /gene="hurI" FT /locus_tag="BP0349" FT /product="heme uptake regulator" FT /note="Similar to Escherichia coli probable RNA polymerase FT sigma factor FecI or B4293 SW:FECI_ECOLI (P23484) (173 aa) FT fasta scores: E(): 1.2e-26, 50.649% id in 154 aa, and to FT Pseudomonas aeruginosa putative RNA polymerase sigma factor FT Pa1912 TR:Q9I2J2 (EMBL:AE004617) (168 aa) fasta scores: FT E(): 8.9e-31, 55.689% id in 167 aa. Also similar to BP1136, FT 46.875% identity in 160 aa overlap" FT /db_xref="GOA:Q8L2E6" FT /db_xref="InterPro:IPR014284" FT /db_xref="UniProtKB/TrEMBL:Q8L2E6" FT /protein_id="CAE44681.1" FT /translation="MPLTSLAPQDAVHALYREHHGWLQSWLRKKLNDAYDAADLAQDTF FT VRVLRHRAELATLREPRAYLLTIAGRLVVNHYRRRSLERAYLEALASLPPAHAPSPEQR FT ALILEALDQIDAFLHSLAPKVRQAFLLAQLERLPYADIARRLQVSVRTVQRYIAQGYEQ FT CILLAP" FT misc_feature complement(5734..5799) FT /note="Predicted helix-turn-helix motif with score 1853 FT (+5.50 SD) at aa 137-158, sequence LPYADIARRLQVSVRTVQRYIA" FT misc_feature complement(5968..6135) FT /note="HMMPfam hit to PF00776, Sigma-70 factor (ECF FT subfamily)" FT CDS complement(6381..6551) FT /transl_table=11 FT /locus_tag="BP0350" FT /product="hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VSQ2" FT /protein_id="CAE44682.1" FT /translation="MQHARIGQQLLPHFAQRAELRRTIPLFPFTLAELLAPLRRKTTNR FT PGSDEPALDAR" FT CDS 6886..7203 FT /transl_table=11 FT /locus_tag="BP0351" FT /product="putative ferredoxin" FT /note="Similar to Synechocystis sp ferredoxin PetF or FT Sll1382 TR:P74159 (EMBL:D90912) (122 aa) fasta scores: E(): FT 0.074, 28.125% id in 96 aa, and to Anabaena variabilis FT putative TR:AAL05047 (EMBL:AF410434) (99 aa) fasta scores: FT E(): 0.015, 30.526% id in 95 aa" FT /db_xref="GOA:Q7VSQ1" FT /db_xref="InterPro:IPR001041" FT /db_xref="UniProtKB/TrEMBL:Q7VSQ1" FT /protein_id="CAE44683.1" FT /translation="MPIVVFHKGDETFTDEVKDNTNLVVRAGIKQFPYPNLRYQCGMGK FT CATCACRILAGGEHLPEPNWKEKKQLGDRLAQGYRLACQLWITHDIELRQDAAAPAGGG FT D" FT misc_feature 6895..7152 FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain" FT misc_feature 7006..7032 FT /note="ScanRegExp hit to PS00197, 2Fe-2S ferredoxins, FT iron-sulfur binding region signature." FT CDS 7205..7504 FT /transl_table=11 FT /locus_tag="BP0352" FT /product="hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VSQ0" FT /protein_id="CAE44684.1" FT /translation="MYVILTNKPGQFHTEAGPEFEVVEEYDYLFYGQRKAIYQIAALRG FT EAKVAIVEEGPGAVVNHVPSKFLEKFESLQGARDALTDLTRFGSMQAELVRRDA" FT CDS 7523..7828 FT /transl_table=11 FT /locus_tag="BP0353" FT /product="putative ferredoxin" FT /note="Similar to Ralstonia spKN1 ferredoxin-like protein FT PhyF TR:Q9RAF3 (EMBL:AB031996) (115 aa) fasta scores: E(): FT 0.00015, 36.957% id in 92 aa, and to Pseudomonas putida FT ferredoxin, plant-type NahT SW:FERN_PSEPU (P23263) (108 aa) FT fasta scores: E(): 0.00022, 30.303% id in 99 aa" FT /db_xref="GOA:Q7VSP9" FT /db_xref="HSSP:1B9R" FT /db_xref="InterPro:IPR001041" FT /db_xref="UniProtKB/TrEMBL:Q7VSP9" FT /protein_id="CAE44685.1" FT /translation="MNTMVEITFITNGGKVVTAPENSNLLRVSLKEQGGIPFKCGGGLC FT GTCKCLIESGLEHTDAIKPKERRHLTPEDFERGYRMACQTFVNGDIKVSWQKPKPV" FT misc_feature 7541..7789 FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain" FT misc_feature 7640..7666 FT /note="ScanRegExp hit to PS00197, 2Fe-2S ferredoxins, FT iron-sulfur binding region signature." FT CDS 7839..8771 FT /transl_table=11 FT /locus_tag="BP0354" FT /product="probable ornithine cyclodeaminase" FT /note="Similar to Halobacterium sp ornithine cyclodeaminase FT Ocd2 or Vng1364G TR:Q9HQ24 (EMBL:AE005056) (328 aa) fasta FT scores: E(): 3.7e-18, 31.494% id in 308 aa, and to FT Rhizobium loti ornithine cyclodeaminase Ocd2 or Mlr3204 FT TR:Q98GR8 (EMBL:AP003001) (321 aa) fasta scores: E(): FT 5.4e-16, 33.127% id in 323 aa" FT /db_xref="GOA:Q7VSP8" FT /db_xref="InterPro:IPR016040" FT /db_xref="PDB:3HDJ" FT /db_xref="UniProtKB/TrEMBL:Q7VSP8" FT /protein_id="CAE44686.1" FT /translation="MLHIDDAMIEDAVTPQAAQEVLHAAFLDFGRGSAAMQRRVRTEAG FT GVKLSTLGAVIPGQGVAGAKVYTTIKGQFQFVILLFSAADGRPLATCDAGTLTRKRTAA FT CTVLAAGALARPRSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPYASPEILERIGR FT RCGVPARMAAPADIAAQADIVVTATRSTTPLFAGQALRAGAFVGAIGSSLPHTRELDDE FT ALRRARAVVVEWREQTLSEAGDLVLAAPDTGLDAKVVELADVLAGRAAARQADEDIVIY FT KSVGVGLEDVALAGYAYRRLAAQRGWPAP" FT misc_feature 7839..8753 FT /note="HMMPfam hit to PF02423, Ornithine FT cyclodeaminase/mu-crystallin family" FT CDS complement(8768..9718) FT /transl_table=11 FT /locus_tag="BP0355" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE44687.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 8768..8799 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(8768..9820) FT misc_feature complement(8804..9337) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(9395..9460) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(9789..9820) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(9830..10552) FT /transl_table=11 FT /locus_tag="BP0356" FT /product="GntR-family transcription regulator" FT /note="Similar to Rhizobium leguminosarum transcription FT activator MatR TR:Q9JP74 (EMBL:AF117694) (222 aa) fasta FT scores: E(): 9.1e-15, 37.824% id in 193 aa, and to FT Streptomyces coelicolor putative transcriptional regulator FT Sc4b5.15 TR:Q9ZBV3 (EMBL:AL034443) (225 aa) fasta scores: FT E(): 1.1e-17, 33.028% id in 218 aa. Also similar to BP2975, FT 56.034% identity (56.522% ungapped) in 232 aa overlap." FT /db_xref="GOA:Q7VSP7" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VSP7" FT /protein_id="CAE44688.1" FT /translation="MAISGPSTYPLDAGHSAPSLKIGEQHMPLFAVIRDKLRERILSGE FT FTPGDRLIEGRLSDDMGVSRIPVREALRALAAEGLVTIEPRRGASVAVPSEAIAYDMVE FT VRATLEGLNAKLAAQRRDDATVTRLRKFLDDGTEAARSDDLQQFLALNSQFHEMLATIA FT GNVVLTDLMRSLRDRTALLFAPSNMRRAKQNWDEHAQILNAVIAGNGELASLLATQHVH FT NAARAYTEAQQQNQPSAA" FT misc_feature complement(10280..10456) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT misc_feature complement(10328..10402) FT /note="ScanRegExp hit to PS00043, Bacterial regulatory FT proteins, gntR family signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS complement(10651..11394) FT /transl_table=11 FT /locus_tag="BP0357" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Sma1368 TR:AAK65408 (EMBL:AE007262) (241 aa) fasta scores: FT E(): 1e-21, 36.325% id in 234 aa, and to Vibrio cholerae FT hypothetical protein Vca1052 TR:Q9KKQ0 (EMBL:AE004431) (240 FT aa) fasta scores: E(): 2.8e-14, 28.507% id in 221 aa" FT /db_xref="GOA:Q7VSP6" FT /db_xref="InterPro:IPR002781" FT /db_xref="UniProtKB/TrEMBL:Q7VSP6" FT /protein_id="CAE44689.1" FT /translation="MPWLAYAPDPWLFAAMAATVFVAAVAQGIGGVGFAMLAAPVAGIF FT FPQLAPGPLLTLGGFVSLLTALRERAAIDWATVGYTLVGRFAGTLVAVYALTRFAPQLL FT SVLFAVSILAAVGISVAGVRISASPAQMSGAGLASGVMGTITSVGAPPLAIMMQHSPPP FT RLRATLGLILFIGASFSLTMLSLADRYGVNEFLLSVGLLPFLLLGFSCSSRLKERMRPA FT TVRRILLGICAIGALVVLARAALGA" FT misc_feature complement(join(10657..10713,10750..10806,10837..10887, FT 10924..10989,11020..11085,11107..11166,11197..11262, FT 11284..11349)) FT /note="8 probable transmembrane helices predicted for FT BP0357 by TMHMM2.0 at aa 15-37, 44-66, 76-96, 103-125, FT 135-157, 169-186, 196-215 and 227-246" FT misc_feature complement(11215..11244) FT /note="ScanRegExp hit to PS00178, Aminoacyl-transfer RNA FT synthetases class-I signature." FT misc_feature complement(11317..11394) FT /note="Signal peptide predicted for BP0357 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.833) with cleavage site FT probability 0.688 between residues 26 and 27" FT CDS 11625..13133 FT /transl_table=11 FT /locus_tag="BP0358" FT /product="putative membrane protein" FT /note="Similar to Bacillus halodurans Bh2161 protein FT TR:Q9KAX5 (EMBL:AP001514) (477 aa) fasta scores: E(): FT 2.9e-34, 46.573% id in 496 aa, and to Bacillus subtilis FT hypothetical 48.8 kDa protein YhfA TR:O07599 (EMBL:Y14083) FT (463 aa) fasta scores: E(): 2.6e-16, 32.520% id in 492 aa. FT Also similar to BP2974, 65.139% identity (65.663% ungapped) FT in 502 aa overlap." FT /db_xref="UniProtKB/TrEMBL:Q7VSP5" FT /protein_id="CAE44690.1" FT /translation="MQSDVVLGAAHWVYLLSVVAIILTMVLRANAVVPSVLGTFLVVLA FT FTGSPIQALVGIFTASFVAAKELFNIFLVITFMTALLNALKVLQADVRMVQPLRRVMTN FT GHASFLILAGCTYGLSLFFWPTPAVPLVCAILLPAAVAAGLPPLAGAMAIAIAGQGMAL FT SSEYVIGVAPGISAKAAGAAVSAAVVADRALVLSVITGAIALVMTYLFMRKHIVPGDTA FT LLAAWQARAQDGELERIEGSGSFDKAELARGASQPVKGGAEARLAGWSRAFALITPIAF FT LGVIALMALPRLVPGLPALRGGDAAALVGGVAFMLMMLATLAAEGPRRMLDVCPEHVTD FT GFVFAFRAMGSVLPIAGFFFIGAAETAAPILGLESGHAPGLLFDLISAAQHLIPENHYL FT VAFGVLLVGMVTGIDGSGFAGLPLTGTLSGALGPVVGIDPATLAAVGQMGAVWTGGGTL FT IAWSSLIAVAGFARVHVLDMVRALMLPVLLALSVSTIAAILIWS" FT misc_feature join(11637..11705,11730..11798,11826..11879,11937..11996, FT 12024..12092,12126..12194,12204..12257,12426..12494, FT 12537..12596,12819..12887,12969..13037,13056..13124) FT /note="12 probable transmembrane helices predicted for FT BP0358 by TMHMM2.0 at aa 5-27, 36-58, 68-85, 105-124, FT 134-156, 168-190, 194-211, 268-290, 305-324, 399-421, FT 449-471 and 478-500" FT misc_feature 12885..12902 FT /note="ScanRegExp hit to PS00343, Gram-positive cocci FT surface proteins 'anchoring' hexapeptide." FT CDS 13253..13984 FT /transl_table=11 FT /locus_tag="BP0359" FT /product="conserved hypothetical protein" FT /note="Similar to Chlamydia muridarum putative coenzyme pqq FT synthesis protein C Tc0900 TR:Q9PJC9 (EMBL:AE002356) (236 FT aa) fasta scores: E(): 2.5e-11, 28.729% id in 181 aa, and FT to Pseudomonas aeruginosa pyrroloquinoline quinone FT biosynthesis protein C Pqqc or Pa1987 TR:Q9I2C2 FT (EMBL:AE004625) (250 aa) fasta scores: E(): 2e-06, 28.638% FT id in 213 aa" FT /db_xref="InterPro:IPR016084" FT /db_xref="UniProtKB/TrEMBL:Q7VSP4" FT /protein_id="CAE44691.1" FT /translation="MSDLMSREEFRSALENAIKGKSANASPFSIAWASGQLSREHLARW FT AENHYHYVGPFADYLAYIYGRTPDTYTEAKDFLLANMYEEEIGGDRHTDLLIRFAEACG FT TTRERVVSPDNMSPTTRGLQSWCYAVAMREDPIVAVAGLVVGLESQVPSIYRKQTPTLR FT EKYGFTDEEVEFFDLHIVSDEIHGERGYQIVLEHANTPELQQRCLRICEVGAQMRLLYT FT TALYTDYVQHELSLDKLKLAA" FT misc_feature 13670..13747 FT /note="ScanRegExp hit to PS00217, Sugar transport proteins FT signature 2." FT CDS 14029..15489 FT /transl_table=11 FT /locus_tag="BP0360" FT /product="probable aldehyde dehydrogenase" FT /EC_number="1.2.1.3" FT /note="Similar to Bacillus stearothermophilus aldehyde FT dehydrogenase, thermostable AldhT SW:DHAL_BACST (P42329) FT (488 aa) fasta scores: E(): 1.1e-77, 46.008% id in 476 aa, FT and to Bacillus subtilis probable aldehyde dehydrogenase FT YcbD SW:DHA1_BACSU (P42236) (488 aa) fasta scores: E(): FT 7.9e-77, 45.702% id in 477 aa" FT /db_xref="GOA:Q7VSP3" FT /db_xref="HSSP:1CW3" FT /db_xref="InterPro:IPR016162" FT /db_xref="UniProtKB/TrEMBL:Q7VSP3" FT /protein_id="CAE44692.1" FT /translation="MEDLRNHEFKNYIGGQWVACAAGKTYPNVNPADTDDIVGRFQASQ FT AEDAAAAVAAAQAAFDGWRNLAVSKRAALMQRAADYLEAHAEQFGRELTREEGKALNLA FT KDEVLRSAQTIRFYAAEGQSFSGETFVNDDPDMVVYSQREPLGVVTVISPWNFPVSIPA FT RKIAPALITGNTVVFKPSSDAPLSGLRLVEAFEQAGLPPGVLNLVTGSASAIGAAITQA FT SQVRAVSFTGSTAAGEQIHRSVDMTTRTQMELGGKNPLIVMADADLDRAVDLVVKGGFS FT LSGQACTGTSRVLVDAPVKAAFTEKLLAKVKALKVGNSLEGSFDLGPLATARQLESVMR FT YIEVGKQEARLLCGGERLEGPGYERGYYLTPAVFADVTQQMRIAREEIFGPVIALIEVN FT GYEDAIAKANDTEYGLAAAIATTNAQYAHRFARDIQAGTVKINRTTTGNLINAPFGGLK FT RSSTSTFRESGRIGLEFYTQIKTVYRAG" FT misc_feature 14074..15486 FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family" FT misc_feature 14782..14805 FT /note="ScanRegExp hit to PS00687, Aldehyde dehydrogenases FT glutamic acid active site." FT misc_feature 14866..14901 FT /note="ScanRegExp hit to PS00070, Aldehyde dehydrogenases FT cysteine active site." FT CDS 15514..15993 FT /transl_table=11 FT /locus_tag="BP0361" FT /product="conserved hypothetical protein" FT /note="Similar to Citrobacter freundii hypothetical 15.0 FT kDa protein in dhaT-dhaS intergenic region SW:YDHY_CITFR FT (P45517) (142 aa) fasta scores: E(): 4.1e-11, 33.803% id in FT 142 aa, and to Clostridium pasteurianum hypothetical 15.1 FT kDa protein TR:O30453 (EMBL:AF006034) (143 aa) fasta FT scores: E(): 5.6e-11, 36.957% id in 138 aa" FT /db_xref="InterPro:IPR005624" FT /db_xref="UniProtKB/TrEMBL:Q7VSP2" FT /protein_id="CAE44693.1" FT /translation="MKQIYRLELEEARVMIQAAIAKSEEIGVLESICIVDDGGYPIALE FT RMNGARITGPQIAWNKAFTTAGHKRSTHLFNTPPNGPALPGNEAFGIQWSFEGKFAVFV FT GGFPIVVDDEVIGGVGLSGGNGEQDTKAGVAALQALADMLAERGMKVMVAADIKK" FT CDS 16012..17022 FT /transl_table=11 FT /locus_tag="BP0362" FT /product="CDP-6-deoxy-delta-3,4-glucoseen reductase" FT /EC_number="1.17.1.-" FT /note="Similar to Yersinia pseudotuberculosis FT CDP-6-deoxy-delta-3,4-glucoseen reductase AscD or RfbI FT SW:ASCD_YERPS (P37911) (328 aa) fasta scores: E(): 1.2e-35, FT 33.846% id in 325 aa, and to Yersinia pestis FT CDP-6-deoxy-delta-3,4-glucoseen reductase DdhD TR:CAB63270 FT (EMBL:AJ251713) (329 aa) fasta scores: E(): 4.9e-36, FT 33.739% id in 329 aa. Also similar to BP1817, 40.000% FT identity in 350 aa overlap" FT /db_xref="GOA:Q7VSP1" FT /db_xref="HSSP:1JQ4" FT /db_xref="InterPro:IPR001221" FT /db_xref="UniProtKB/TrEMBL:Q7VSP1" FT /protein_id="CAE44694.1" FT /translation="MAYRIHLMETGEQFSAEPGESVLDAATRANVRMAHECTFGGCGTC FT RVKLLEGRVEYEEPPMALSEEEAACGYALVCQARACSDLEISVASGPSFAEPRRIAARV FT AHIAPLCSDVTHLALEVDPDQWPDYRAGQYMNIVLPDGQTRSFSMASDPRHGRLDFHVR FT RIAGGRFTDRWLAAAQAGAPLEIEAPLGTFCYHEQDYRPLVMVATGTGLAPIKAMLESL FT LDDDECPPVSLYWGMRTEADLYLRDAIASWQGRLYEFDFVPVLSRPDAGWRGRSGYVQD FT AVLQDFDDLSEHALYLCGSPTMIAQAKHRFAERGASLDHLYADSFTFQHPLAAAA" FT misc_feature 16018..16257 FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain" FT misc_feature 16120..16146 FT /note="ScanRegExp hit to PS00197, 2Fe-2S ferredoxins, FT iron-sulfur binding region signature." FT misc_feature 16609..16941 FT /note="HMMPfam hit to PF00175, Oxidoreductase NAD-binding FT domain" FT CDS 17237..17977 FT /transl_table=11 FT /locus_tag="BP0363" FT /product="probable extracellular solute-binding protein" FT /note="Similar to Rhizobium loti probable binding protein FT component of amino acid ABC transporter Mlr2201 TR:Q98IX6 FT (EMBL:AP002999) (262 aa) fasta scores: E(): 0.0001, 29.104% FT id in 134 aa, and to Synechocystis sp hypothetical 30.6 kDa FT protein Sll0174 TR:Q55556 (EMBL:D63999) (284 aa) fasta FT scores: E(): 4.9e-29, 41.304% id in 230 aa" FT /db_xref="GOA:Q7VSP0" FT /db_xref="InterPro:IPR001638" FT /db_xref="UniProtKB/TrEMBL:Q7VSP0" FT /protein_id="CAE44695.1" FT /translation="MMIDPELRPAFLPAGKLRAAINLGNPILAGTDAAGQAVGVSVDLA FT REFARRLNAGIELRVFDTAGQSVDAVTREEADIGFFAIDPARGAGIAFTGPYVLIEGAY FT LVRDDSPLQANEDVDRAGKRVTVGKGSAYDLHLTRALQHAEIVRAASSQAVVDTFLARR FT LDVAAGVKQQLQADARRVGGVRLLPGRFMVIRQAMGLPKARGDAAAACLDAFVESMKGN FT GFVAQALARHGIQGASVAPPGRDG" FT misc_feature 17285..17941 FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3" FT CDS 18184..19158 FT /transl_table=11 FT /locus_tag="BP0364" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Smb20179 TR:CAC48579 (EMBL:AL603642) (324 aa) fasta FT scores: E(): 1.3e-14, 24.615% id in 325 aa, and to FT Rhizobium loti Mlr3473 protein TR:Q98G63 (EMBL:AP003002) FT (390 aa) fasta scores: E(): 6.7e-12, 30.864% id in 324 aa" FT /db_xref="InterPro:IPR000169" FT /db_xref="UniProtKB/TrEMBL:Q7VSN9" FT /protein_id="CAE44696.1" FT /translation="MVRCALAGAGLACCVSAMATPIFVLNSLNADVSIIDSQTYAEMRR FT VPTGKEPHHLYLTPDEQSLMVANAMSDTITLLDPRTGAVQHTLTGIVDPYHLRFSPDMK FT WFVTAANRLDHIDIYSWERRTEEFDLKLARRIPAGRTPSHIAIDSGSRVAYVTLQDSDQ FT LIAIDLGTQAPLWTIPVGKTPADVFVTGDDKILLVALTGDSYVEAYDLTVSPARLVRRI FT KTGAGAHAFRAQGDGRHLFVSNRAANTISRIDMQTLEVVDSYPAPGGPDCMDVLADGKM FT LLVTSRWAGKLTVIDLETKKVSQQVRVGKSPHGVWTLGHAAAR" FT misc_feature 18184..18240 FT /note="Signal peptide predicted for BP0364 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.728 between residues 18 and 19" FT misc_feature 18187..18255 FT /note="1 probable transmembrane helix predicted for BP0364 FT by TMHMM2.0 at aa 7-29" FT misc_feature 19114..19146 FT /note="ScanRegExp hit to PS00639, Eukaryotic thiol FT (cysteine) proteases histidine active site." FT CDS complement(19155..20105) FT /transl_table=11 FT /locus_tag="BP0365" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7VSN8" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7VSN8" FT /protein_id="CAE44697.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQDQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 19155..19186 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(19155..20207) FT misc_feature complement(19191..19724) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(19782..19847) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT CDS complement(20187..20966) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0366" FT /product="putative universal stress protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. The insertion occurred near the FT C-terminus. It is not clear whether this insertion affects FT the function of the protein. Similar to Pseudomonas FT aeruginosa hypothetical protein Pa4352 TR:Q9HW49 FT (EMBL:AE004851) (286 aa) fasta scores: E(): 3e-15, 33.721% FT id in 258 aa, and to Wolinella succinogenes hypothetical FT 23.3 kDa protein TR:CAC50083 (EMBL:AJ318778) (204 aa) fasta FT scores: E(): 3e-07, 30.319% id in 188 aa" FT /db_xref="PSEUDO:CAE44698.1" FT misc_feature complement(20553..20858) FT /note="HMMPfam hit to PF00582, Universal stress protein FT family" FT CDS 21154..21792 FT /transl_table=11 FT /locus_tag="BP0367" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1037 TR:Q9I4T7 (EMBL:AE004536) (206 aa) fasta FT scores: E(): 1.7e-45, 60.294% id in 204 aa, and to Vibrio FT cholerae hypothetical protein Vc2115 TR:Q9KQ86 FT (EMBL:AE004285) (207 aa) fasta scores: E(): 3.4e-37, FT 51.515% id in 198 aa" FT /db_xref="InterPro:IPR005115" FT /db_xref="UniProtKB/TrEMBL:Q7VSN7" FT /protein_id="CAE44699.1" FT /translation="MPPDPSVLLLYTLYLVAIVAEAMTAALAAGRRDMDWVGVCVIACV FT TALGGGSLRDVLLGHYPLSWVAHPEYLWMTAGAALLTALGARALRRLRSLFLLLDAIGL FT VAFTIIGCQVAQQMEMPLTIVLVSGMITGCAGGVLRDVLCNDIPLLFRSELYASVSAVT FT GGLYLAMYGQGVSASVSVPVALAVGLAFRLLALRFNWQMPKFVYRGDWH" FT misc_feature join(21181..21240,21259..21327,21364..21417,21436..21504, FT 21517..21570,21595..21663,21673..21741) FT /note="7 probable transmembrane helices predicted for FT BP0367 by TMHMM2.0 at aa 10-29, 36-58, 71-88, 95-117, FT 122-139, 148-170 and 174-196" FT CDS complement(21829..23172) FT /transl_table=11 FT /gene="gdhA" FT /locus_tag="BP0368" FT /product="NADP-specific glutamate dehydrogenase" FT /EC_number="1.4.1.4" FT /note="Similar to Escherichia coli NADP-specific glutamate FT dehydrogenase GdhA or B1761 SW:DHE4_ECOLI (P00370) (447 aa) FT fasta scores: E(): 3.7e-126, 72.398% id in 442 aa, and to FT Pasteurella multocida GdhA or Pm0043 TR:Q9CPJ4 FT (EMBL:AE006038) (449 aa) fasta scores: E(): 2.4e-126, FT 72.321% id in 448 aa" FT /db_xref="GOA:Q7VSN6" FT /db_xref="HSSP:1AUP" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VSN6" FT /protein_id="CAE44700.1" FT /translation="MKLQSLDDFLRRVAARDPQQAEFMQAVQEVMLSLWPFIEKHPHYA FT EHALLERLVEPERVIQFRVCWTDDQGQAQVNRAFRIQHSSAIGPFKGGMRFHPTVNLSV FT LKFLAFEQTLKNALTTLPMGGGKGGSDFDPKGKSDAEVMRFCQALMLELHRHLGPDTDV FT PAGDIGVGAREVGFMAGMMKKLSNSAASVFTGKGLCFGGSLIRPEATGYGTVYFAQEML FT QRAGLSFDGMRVSVSGSGNVAQYAIEKAMALGAKVVTISDSCGTVIDEAGFTHEKLLAL FT MHIKNDLRGRLDTYASQFGLRYEAGVRPWHVPVDVALPCATQNELDENDARTLIRNGVK FT CVAEGANMPATLDAAKAFIAAEVLYAPGKASNAGGVAVSGLEMSQNSARLPWTREQVNA FT RLHAIMRDIHENCVRHGHGAGNYVNYVDGANIAGFVKVADAMRQQGLY" FT misc_feature complement(21838..22572) FT /note="HMMPfam hit to PF00208, FT Glutamate/Leucine/Phenylalanine/Valine dehydrogenase" FT misc_feature complement(22771..22812) FT /note="ScanRegExp hit to PS00074, Glu / Leu / Phe / Val FT dehydrogenases active site. Confirmed by InterPro eMOTIF FT pattern match." FT CDS complement(23595..24383) FT /transl_table=11 FT /locus_tag="BP0369" FT /product="putative endonuclease" FT /note="Similar to Neisseria meningitidis putative nuclease FT Nma0348 or Nmb2082 TR:Q9JR99 (EMBL:AL162752) (259 aa) fasta FT scores: E(): 5e-63, 56.705% id in 261 aa, and to FT Streptomyces coelicolor putative exodeoxyribonuclease FT Sce87.25C TR:Q9RKB3 (EMBL:AL132674) (274 aa) fasta scores: FT E(): 2.3e-48, 47.388% id in 268 aa" FT /db_xref="GOA:Q7VSN5" FT /db_xref="HSSP:1BIX" FT /db_xref="InterPro:IPR005135" FT /db_xref="UniProtKB/TrEMBL:Q7VSN5" FT /protein_id="CAE44701.1" FT /translation="MLRITSLNLNGIRSAFRKGLQPWMTAHNADVLCLQEIKVSHDDLT FT DELRHPPGYTGHFHHAEKKGYSGVGMYLRAGAERVVAGFDCEEFDAEGRILRADWKDLS FT VISAYLPSGSSGDERQQTKYRFLDQFGPWLDGLMAEHRKTGREFVICGDWNIAHKEIDL FT KNWKGNQKNSGFLPEERAWLTEVFDRRGFVDVFRKLDERADQYTWWSNRGQAWAKNVGW FT RIDYQIATPGIAERARATSIYKDERFSDHAPLTVDYDIAL" FT misc_feature complement(23607..24380) FT /note="HMMPfam hit to PF01260, AP endonuclease family 1" FT misc_feature complement(24270..24299) FT /note="ScanRegExp hit to PS00726, AP endonucleases family 1 FT signature 1." FT CDS 24521..25195 FT /transl_table=11 FT /gene="pyrE" FT /locus_tag="BP0370" FT /product="orotate phosphoribosyltransferase" FT /EC_number="2.4.2.10" FT /note="Similar to Escherichia coli orotate FT phosphoribosyltransferase PyrE or B3642 SW:PYRE_ECOLI FT (P00495) (212 aa) fasta scores: E(): 7.5e-42, 58.879% id in FT 214 aa, and to Salmonella typhimurium orotate FT phosphoribosyltransferase PyrE SW:PYRE_SALTY (P08870) (212 FT aa) fasta scores: E(): 2.2e-42, 59.346% id in 214 aa" FT /db_xref="GOA:Q7VSN4" FT /db_xref="InterPro:IPR000836" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSN4" FT /protein_id="CAE44702.1" FT /translation="MSASASTAADFVRFALDEGVLRFGSFKVKSGRISPYFFNAGLFNS FT GRSVGTLAGFYAQALIDSGVAFDMLFGPAYKGIPLATATSVALAGHGAMAGRDVPFAFN FT RKEAKDHGEGGTLVGAPLTGKVVIIDDVITAGTSVRESVEIIRAAGAEPAAVLIALDRM FT ERAGPDDALSPHSAVQDVARTYGIPVVSIASLADIMTLLQDDAQFAEHRAAVQAYRSKY FT GV" FT misc_feature 24623..25108 FT /note="HMMPfam hit to PF00156, Phosphoribosyl transferase FT domain" FT misc_feature 24896..24934 FT /note="ScanRegExp hit to PS00103, Purine/pyrimidine FT phosphoribosyl transferases signature. Confirmed by FT InterPro eMOTIF pattern match." FT CDS complement(25309..26763) FT /transl_table=11 FT /gene="gatB" FT /locus_tag="BP0371" FT /product="glutamyl-tRNA(GLN) amidotransferase subunit B" FT /note="Similar to Staphylococcus aureus glutamyl-tRNA(GLN) FT amidotransferase subunit B GatB TR:Q9RF06 (EMBL:AF205033) FT (475 aa) fasta scores: E(): 4.7e-84, 47.521% id in 484 aa, FT and to Neisseria meningitidis glu-tRNA(GLN) FT amidotransferase subunit A GatB or Nma1570 TR:Q9JTZ3 FT (EMBL:AL162756) (476 aa) fasta scores: E(): 2.6e-114, FT 62.526% id in 483 aa" FT /db_xref="GOA:Q7VSN3" FT /db_xref="InterPro:IPR017958" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSN3" FT /protein_id="CAE44703.1" FT /translation="MNWEIVIGLETHTQLSTDSKIFSGSSTRFGAAPNTQANAVDLALP FT GSLPVMNRGAAERAILFGLAVGGKVAPRSVFARKNYFYPDLPKGYQISQYELPVVEGGT FT LSFFVGEEEKTVNLTRAHLEEDAGKSLHDEFSLASGAPASGIDLNRAGTPLLEIVTEPE FT MRSAAEAVAYARALHSLVVWLGICDGNMQEGSFRCDANVSVRPVGQKEFGTRTEIKNVN FT SFRFLERAILFEARRQIELIEDGGTVVQETRLYDADRDETRSMRSKEDAHDYRYFPDPD FT LPPLVIGQDWIDAVRAGMPELPAAQRARFEADYGLPAYDAAQLTVSRAMADYFEAVARA FT LPAGQAKLAANWIMGEVAATLNREEKDIDAAPVSAAALAALINRIIDGTISNKIARDVF FT AAMWAGENGGDADAIIEARGLKQISDSGAIGAMIDEVLAANPAIVEEYRAGKQKAFNSL FT VGQIMKAAKGKANPQQVNELLKEKLG" FT misc_feature complement(25312..26574) FT /note="HMMPfam hit to PF01162, PET112 family, C terminal FT region" FT misc_feature complement(26278..26322) FT /note="ScanRegExp hit to PS01234, Glutamyl-tRNA(Gln) FT amidotransferase subunit B signature." FT CDS complement(26766..28304) FT /transl_table=11 FT /gene="gatA" FT /locus_tag="BP0372" FT /product="glutamyl-tRNA(GLN) amidotransferase subunit A" FT /EC_number="6.3.5.-" FT /note="Similar to Bacillus subtilis glutamyl-tRNA(GLN) FT amidotransferase subunit A GatA SW:GATA_BACSU (O06491) (485 FT aa) fasta scores: E(): 6.9e-34, 46.680% id in 497 aa, and FT to Pseudomonas aeruginosa glu-tRNA(GLN) amidotransferase FT subunit A GatA or Pa4483 TR:Q9HVT8 (EMBL:AE004862) (484 aa) FT fasta scores: E(): 4.1e-45, 57.344% id in 497 aa" FT /db_xref="GOA:Q7VSN2" FT /db_xref="InterPro:IPR004412" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSN2" FT /protein_id="CAE44704.1" FT /translation="MTQSALHTEFGGIAALRDALARRQVSAVELAQSGLDAAQAASGLN FT AFLHIDPDLTLAQARAADAALAAGTAGPLAGIPIAHKDAFVTRGWRTTAGSKMLAGYAS FT PFDATVVERLAEAGAVSLGKLNCDEFAMGSGNENSAYGPVRNPWDTQAVPGGSSGGSAA FT AVAARLVAAATGTDTGGSVRQPAALCGVSGIKPTYGTVSRYGIIAFGSSLDQAGPLAPS FT SRDLLELLDVMTGFDPRDATSLQACDGQANESGRVRRGHDAAQAGYDAAGSQPLKGLRI FT GVPQEYFGAGLAPDVAAAVEAALAQFEQLGAVRVPVSLPRTELAIPAYYVIAPAEASSN FT LARYDGVRYGHRAAQYGDLNEMISRSRAEGFGDEVKRRILIGTYVLSHGYYDAYYLQAQ FT RLRRLIAQDFQRAFAGQCDVIMGPVSPTVAKNIGDNRDDPTADWLADVYTLGVSLAGLP FT AMSVPCGFGGQDGRRPVGLQIIGNYFDEGRLLALADRYQQVTDWHQRAPVSQDA" FT misc_feature complement(26835..28220) FT /note="HMMPfam hit to PF01425, Amidase" FT misc_feature complement(27747..27842) FT /note="ScanRegExp hit to PS00571, Amidases signature. FT Confirmed by InterPro eMOTIF pattern match." FT CDS complement(28307..28615) FT /transl_table=11 FT /gene="gatC" FT /locus_tag="BP0373" FT /product="glutamyl-tRNA(GLN) amidotransferase subunit C" FT /EC_number="6.3.5.-" FT /note="Similar to Bacillus stearothermophilus FT glutamyl-tRNA(GLN) amidotransferase subuni GatC FT SW:GATC_BACST (P58250) (96 aa) fasta scores: E(): 9e-05, FT 34.021% id in 97 aa, and to Neisseria meningitidis FT glutamyl-tRNA(GLN) amidotransferase subuni GatC or Nmb1355 FT SW:GATC_NEIMB (Q9JZ00) (96 aa) fasta scores: E(): 3.4e-12, FT 47.059% id in 102 aa" FT /db_xref="GOA:Q7VSN1" FT /db_xref="InterPro:IPR003837" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSN1" FT /protein_id="CAE44705.1" FT /translation="MALNEQDVARIARLARIELTPDQRGRAQAELNGILHLIERLQAVD FT TQGVEPLAHPLSAHEDITLRLREDAVSEQATEARRAELLANAPESADGLFLVPKVIE" FT misc_feature complement(28325..28561) FT /note="HMMPfam hit to PF02686, Glu-tRNAGln amidotransferase FT C subunit" FT CDS 28846..29889 FT /transl_table=11 FT /gene="mreB" FT /gene_synonym="envB" FT /gene_synonym="rodY" FT /locus_tag="BP0374" FT /product="rod shape-determining protein" FT /note="Similar to Escherichia coli rod shape-determining FT protein MreB or EnvB or RodY or B3251 SW:MREB_ECOLI FT (P13519) (347 aa) fasta scores: E(): 2.6e-88, 72.595% id in FT 343 aa, and to Vibrio cholerae MreB or Vc0415 TR:Q9ZA92 FT (EMBL:AF079234) (347 aa) fasta scores: E(): 2.6e-91, FT 74.487% id in 341 aa" FT /db_xref="GOA:Q7VSN0" FT /db_xref="HSSP:1JCF" FT /db_xref="InterPro:IPR004753" FT /db_xref="UniProtKB/TrEMBL:Q7VSN0" FT /protein_id="CAE44706.1" FT /translation="MFGFLRSYFSSDMAIDLGTANTLIYVRGKGIVLDEPSVVAIRHEG FT GPNGKKIIQAVGHEAKQMLGRVPGNIEAIRPMKDGVIADFTVTEQMLKQFIRMVHPRNM FT LAPSPRIIVCVPCGSTQVERRAIRESALGAGASHVYLIEEPMAAAIGAGLAVSDASGSM FT VVDIGGGTTEVAVISLGGMVYKGSVRVGGDKFDEAIVNYIRRNYGMLIGEPTAELIKKE FT IGSAFPGSEVREIEVKGRNLAEGVPRSFTVSSNEILESLTDPLNQIVSAVKIALEQTPP FT ELGADITDKGIALTGGGALLRDLDRLLQEETGLPVVVADDPLTCVVRGCGEALEHLEKL FT GAIFIND" FT CDS 29978..30862 FT /transl_table=11 FT /gene="mreC" FT /locus_tag="BP0375" FT /product="rod shape-determining protein" FT /note="Similar to Escherichia coli rod shape-determining FT protein MreC or B3250 SW:MREC_ECOLI (P16926) (367 aa) fasta FT scores: E(): 6.4e-29, 36.330% id in 267 aa, and to FT Pseudomonas fluorescens rod shape determining protein MreC FT TR:Q9RH82 (EMBL:AF063934) (366 aa) fasta scores: E(): FT 2e-31, 39.146% id in 281 aa" FT /db_xref="GOA:Q7VSM9" FT /db_xref="InterPro:IPR005223" FT /db_xref="UniProtKB/TrEMBL:Q7VSM9" FT /protein_id="CAE44707.1" FT /translation="MQRQATPPLFRRGPPAEVRLAVLVILALALLIVDSQLRVLEPVRR FT AVSVALYPFQRAVMAPRDLVQQVDEWINAASLIRSENEALQRQRIELAQVATHAAQLAA FT ENAQLRRLLGVTDTVAQSAVVVEVLYEPPNAFHQRLVFNKGAKSGLAPGMPVIDEGGVV FT GQIVRVTPMTAEAALVTDERVSIPVQVLRNGLRLIAFGANIPGVIEVRYLAANADIKVG FT DTIVTSGVGGLFPAGLPVAKVASVERDTASGFARALGEPLAHPERYRHFLVLQVDVDQA FT ESNRQEADVDGAD" FT misc_feature join(30942..30995,31122..31181,31218..31286,31296..31364) FT /note="4 probable transmembrane helices predicted for FT BP0376 by TMHMM2.0 at aa 32-49, 92-111, 124-146 and FT 150-172" FT CDS 30948..31412 FT /transl_table=11 FT /gene="mreD" FT /locus_tag="BP0376" FT /product="rod shape-determining protein" FT /note="Similar to Escherichia coli rod shape-determining FT protein MreD or B3249 or Z4607 or Ecs4121 SW:MRED_ECOLI FT (P16927) (162 aa) fasta scores: E(): 1.5e-06, 33.333% id in FT 117 aa, and to Pseudomonas aeruginosa rod shape-determining FT protein MreD or Pa4479 TR:Q9HVU2 (EMBL:AE004862) (164 aa) FT fasta scores: E(): 1.5e-09, 31.507% id in 146 aa" FT /db_xref="GOA:Q7VSM8" FT /db_xref="InterPro:IPR007227" FT /db_xref="UniProtKB/TrEMBL:Q7VSM8" FT /protein_id="CAE44708.1" FT /translation="MWGTVLLVWLLSLLPWRQWPGSPDVLVLVIAFWCVHEPRRVGLLT FT AFVFGLLLDVHDAGLLGGHALSYTLTAYGAIALHRRLQRFDLWSQAMHMLPVFFLAQLV FT TQIILAWLAGKWPGWQWAVSVGLTVAIWPLAGWVLHMPQRRYDDVESSAV" FT CDS 31426..33378 FT /transl_table=11 FT /gene="mrdA" FT /gene_synonym="pbpA" FT /locus_tag="BP0377" FT /product="penicillin-binding protein 2" FT /note="Similar to Escherichia coli penicillin-binding FT protein 2 MrdA or PbpA or B0635 or Z0781 or Ecs0673 FT SW:PBP2_ECOLI (P08150) (633 aa) fasta scores: E(): 9.7e-85, FT 40.065% id in 614 aa, and to Pseudomonas aeruginosa FT penicillin-binding protein 2 PbpA or Pb or Pa4003 TR:Q9X6V3 FT (EMBL:AF147448) (646 aa) fasta scores: E(): 3.3e-93, FT 43.472% id in 651 aa" FT /db_xref="GOA:Q7VSM7" FT /db_xref="InterPro:IPR001460" FT /db_xref="UniProtKB/TrEMBL:Q7VSM7" FT /protein_id="CAE44709.1" FT /translation="MFEFKKTGQQQKQRFRLRAWVGGLFALACFGVLAGRFWYLQVDRY FT EGFSERADRNRIAVVPIPPRRGEILDRNGEVLARNYRTYTLEVVPAQAGNLDQLFDRLA FT RVVYISPSDQRRFKRRVGESSRYASLQLRNNLNDTEAAWFSAHSFEFPGVELRARWVRE FT YPQGEAAAHVVGFIGRIAENDIEELDKAGQLGNYRGTDVIGKKGIEKTWEAALHGRTGL FT EEVEVTAGGRPMRTLRRIDPVPGSDIMLSIDLELQKLAEQAFEGRRGALVALDPDTGEV FT LAFVSQPSFDPNLFVDGIDVENWRRLNESPDHPLINRPLYGTYPIGSTYKPFVALAALE FT LGKRRATDRMPDPGYFEFGGQKFRNAGGAAYGMTDMHRAIVVSSDTYFYSLGPEIGVNA FT LHDFSKQFGFGQITGIDLEGEKAGVLPSTEWKRKAYKDRDRQRWYAGETISVAVGQGYN FT SFTLLQLAQATSTLANSGLYRRPHLVHAIRDSRSGSVNPTEIAPDYRIPLKQENVDVIK FT RAMADVVRAGTARRAFAGAPYQAAGKTGTAQVFSLRGGQYRASAIDERLRDHALFMGFA FT PVEQPRIAVALIVENAGWGASAAAPIARTLFDNWLGRADAPSVVRAGAKPVAAEPEAAA FT LELGATDGPMQERRQ" FT misc_feature 31426..31527 FT /note="Signal peptide predicted for BP0377 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.984) with cleavage site FT probability 0.979 between residues 34 and 35" FT misc_feature 31480..31512 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 31483..31551 FT /note="1 probable transmembrane helix predicted for BP0377 FT by TMHMM2.0 at aa 20-42" FT misc_feature 32185..33252 FT /note="HMMPfam hit to PF00905, Penicillin binding protein FT transpeptidase domain" FT misc_feature 32395..32442 FT /note="ScanRegExp hit to PS00146, Beta-lactamase class-A FT active site." FT CDS 33375..34511 FT /transl_table=11 FT /gene="mrdB" FT /gene_synonym="rodA" FT /locus_tag="BP0378" FT /product="rod shape-determining protein" FT /note="Similar to Escherichia coli rod shape-determining FT protein MrdB or RodA or B0634 or Z0780 or Ecs0672 FT SW:RODA_ECOLI (P15035) (370 aa) fasta scores: E(): 5.6e-36, FT 45.278% id in 360 aa, and to Vibrio cholerae rod FT shape-determining protein RodA or Vc0949 TR:Q9KTF3 FT (EMBL:AE004177) (373 aa) fasta scores: E(): 1.3e-35, FT 48.753% id in 361 aa" FT /db_xref="GOA:Q7VSM6" FT /db_xref="InterPro:IPR018365" FT /db_xref="UniProtKB/TrEMBL:Q7VSM6" FT /protein_id="CAE44710.1" FT /translation="MKRLGLILLRVFTAFDWPLLLILILFTLLGLTVMHSAVGSTDWRF FT AEQSRNFLIAFAAMWAMALVPPNTLMKLALPFYVLGVILLLGVEFFGETSKGATRWLNL FT GVTRIQPSEMMKIAVPMMLAWYFQRHDGAVRIRDFFVAAAMLAAPFVLIVLQPDLGTAL FT LVFGAGFFVIYFAGLSFKLLVPCLLAGIIAIGTLIYYEDQLCEPEVDWVVLHDYQKHRV FT CTLLNPSSDPLGKGFHTIQSMIAVGSGGLYGKGYMQGTQTHLDFIPERTTDFIFAVYAE FT EFGLYGGVALLVLYGLFMARGLAIASRASSQFGRLLAGAITMMMFIYVFVNVGMVTGIL FT PVVGVPLPFMSYGGTALLTMGIACGILMSISRRRPAPA" FT misc_feature 33375..33491 FT /note="Signal peptide predicted for BP0378 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.985) with cleavage site FT probability 0.961 between residues 39 and 40" FT misc_feature join(33393..33461,33579..33647,33771..33839,33849..33908, FT 33921..33974,34221..34289,34323..34391,34419..34487) FT /note="8 probable transmembrane helices predicted for FT BP0378 by TMHMM2.0 at aa 7-29, 69-91, 133-155, 159-178, FT 183-200, 283-305, 317-339 and 349-371" FT misc_feature 33420..34502 FT /note="HMMPfam hit to PF01098, Cell cycle protein" FT misc_feature 34368..34442 FT /note="ScanRegExp hit to PS00428, Cell cycle proteins ftsW FT / rodA / spoVE signature. Confirmed by InterPro eMOTIF FT pattern match." FT CDS complement(34537..35592) FT /transl_table=11 FT /gene="ldh" FT /locus_tag="BP0379" FT /product="putative L-lactate dehydrogenase" FT /EC_number="1.1.1.27" FT /note="Similar to Alcaligenes eutrophus L-lactate FT dehydrogenase Ldh SW:LDH_ALCEU (Q07251) (349 aa) fasta FT scores: E(): 1.4e-89, 66.097% id in 351 aa, and to FT Escherichia coli hypothetical 38.9 kDa protein in dinG-glnQ FT intergenic region YbiC or B0801 SW:YBIC_ECOLI (P30178) (361 FT aa) fasta scores: E(): 5.4e-36, 35.277% id in 343 aa" FT /db_xref="GOA:Q7VSM5" FT /db_xref="InterPro:IPR003767" FT /db_xref="UniProtKB/TrEMBL:Q7VSM5" FT /protein_id="CAE44711.1" FT /translation="MKLSIAQAIAFGQRLLAAQGVPDDIARDVAEHLVESDRVGYTSHG FT LSILPNYRRVLAEGFVKADGRAKLLNDRGAMLAFDGDNGFGQHVGKAVMQQAIERARQY FT GQCIVTLRRTHHLGRMGYYGEMAAEAGLILLAFTNVVNRPPTVAPYGGAQACLTTNPLC FT FAGPLPGGCPPFLVDMATSSIAVNKARVLAARGEPAPDGALIDAQGNPTNDPNALFADP FT PGALLPFGGHKGYAMGLVAELLAGVLSGGGTIQPEHPRNGVATNNMFAILLDPQVDFNA FT DWRTQEVGAFIDYLHACPPQPGVDRVQYPGEYEAMNRARHAEAIEFEGAIWDSLAKLAQ FT DLGAADALPRA" FT misc_feature complement(34579..35592) FT /note="HMMPfam hit to PF02615, Malate/L-lactate FT dehydrogenase" FT CDS complement(35603..37096) FT /transl_table=11 FT /locus_tag="BP0380" FT /product="putative Sodium:sulfate symportert" FT /note="Similar to Escherichia coli putative tartrate FT carrier YgjE or B3063 SW:TTDT_ECOLI (P39414) (487 aa) fasta FT scores: E(): 1.6e-25, 26.141% id in 482 aa, and to FT Alcaligenes eutrophus membrane protein SW:MEMP_ALCEU FT (Q07252) (513 aa) fasta scores: E(): 1.6e-127, 72.525% id FT in 495 aa" FT /db_xref="GOA:Q7U357" FT /db_xref="InterPro:IPR001898" FT /db_xref="UniProtKB/TrEMBL:Q7U357" FT /protein_id="CAE44712.1" FT /translation="MTAPAAVPAPQSPPKVKIPIGLIAGIIAMVVVLLLPLPAELPPAG FT HRMLAILAFAVVVWITEAVSYEASAIMITTLMAFLLGTAPNVKNPDVLYGTSAAISMAL FT TGFSNSALALVTGALFIAAAMTFTGLDKRIALVTLARVGTSTRRILLGAIAVTIVLSLV FT VPSATARSAAVVPIMLGVIAAFGVDKRSNIAAGIMIIVAQATSIWNVGIQTAAAQNLLT FT VGFMDKMLGERVAWSDWLIAGVPWSLLMSAVLVFVVLRLLPPESDAIAGGKEAVEASLR FT ELGPMTSAQKRLILVSIMLLLFWSTEGKLHKFDTTSTTYFGLVLLMLPRFGVMTWKDVQ FT TRIPWGAVIVFGVGISLGTALLTTQAGQWLGAQVVAHTGLDHLGPLGIFAILSAFLILI FT HLGFASATALTSAMLPILIAVLQTLPGDFNRLGMTMLLGFVVSYGFILPINAPQNMVAL FT GTETFTAKQFAKVGIVLTIVGYLLMLLMSVTYWRWLGWM" FT misc_feature complement(35606..37060) FT /note="HMMPfam hit to PF00939, Sodium:sulfate symporter FT transmembrane region" FT misc_feature complement(join(35618..35683,35723..35788,35819..35869, FT 35885..35950,35996..36061,36098..36148,36314..36379, FT 36461..36517,36578..36643,36707..36763,36884..36949, FT 36971..37036)) FT /note="12 probable transmembrane helices predicted for FT BP0380 by TMHMM2.0 at aa 20-42, 49-71, 111-130, 151-173, FT 193-212, 239-261, 316-333, 345-367, 382-404, 409-426, FT 436-458 and 471-493" FT CDS complement(37309..37884) FT /transl_table=11 FT /locus_tag="BP0381" FT /product="putative TetR-family transcriptional regulator" FT /note="Similar to Escherichia coli Ttk protein or B3641 FT SW:TTK_ECOLI (P06969) (198 aa) fasta scores: E(): 1.6e-19, FT 44.693% id in 179 aa, and to Vibrio cholerae FT transcriptional regulator, TetR family vc0214 TR:Q9KVD2 FT (EMBL:AE004111) (210 aa) fasta scores: E(): 1.9e-24, FT 48.148% id in 189 aa" FT /db_xref="GOA:Q7VSM4" FT /db_xref="InterPro:IPR012287" FT /db_xref="UniProtKB/TrEMBL:Q7VSM4" FT /protein_id="CAE44713.1" FT /translation="MASKPGERKTQILHTLAEMLEQPHAARITTSALAARMQVSEAALY FT RHFASKAQMFEGLIEFIETSIFTVVNQIAVSEPYGMGQARKTVAMLLAFAERNRGITRV FT LTGDALVTEDNRLQERINHINDRIEASLKQCLRVAVSDGALPADANIAAHASLLTHLVL FT GRWLRYAQSGWRVAPTTHLEEHLRLALG" FT misc_feature complement(37711..37851) FT /note="HMMPfam hit to PF00440, Bacterial regulatory FT proteins, tetR family" FT misc_feature complement(37738..37803) FT /note="Predicted helix-turn-helix motif with score 1743 FT (+5.12 SD) at aa 28-49, sequence ITTSALAARMQVSEAALYRHFA" FT CDS complement(37934..38680) FT /transl_table=11 FT /locus_tag="BP0382" FT /product="putative hydrolase" FT /note="Similar to Neisseria meningitidis hydrolase, FT putative Nmb0040 TR:Q9K1P1 (EMBL:AE002362) (237 aa) fasta FT scores: E(): 1e-20, 37.674% id in 215 aa, and to Rhizobium FT meliloti conserved hypothetical protein Smc01730 FT TR:CAC41872 (EMBL:AL591783) (258 aa) fasta scores: E(): FT 4.3e-20, 36.058% id in 208 aa" FT /db_xref="GOA:Q7VSM3" FT /db_xref="InterPro:IPR010237" FT /db_xref="UniProtKB/TrEMBL:Q7VSM3" FT /protein_id="CAE44714.1" FT /translation="MQARRYLLRPAARLRRSRRIATAAPERLWLFDLDNTLHDTSHAIF FT PLIDRGMTEAVAETLAVDEATANRLRAEYWRRYGATVIGLVRHHGVDADAFLHRSHNFE FT VAPLVRAETALADKLRRLPGRKVLLTNAPLHYARAVLRHLGLLRQFDSIWAIEQMCMHG FT QFRPKPSDALLRYVLAREGVPAARAVLIEDTLDNLRSARRVGLRTVHVFHPGTPFARGH FT RQRPGYVDLRVNSVSDLLLRRRPLRG" FT misc_feature complement(38039..38605) FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase" FT CDS complement(38680..39582) FT /transl_table=11 FT /gene="argB" FT /locus_tag="BP0383" FT /product="acetylglutamate kinase" FT /EC_number="2.7.2.8" FT /note="Similar to Corynebacterium glutamicum FT acetylglutamate kinase ArgB SW:ARGB_CORGL (Q59281) (294 aa) FT fasta scores: E(): 4.9e-39, 46.545% id in 275 aa, and to FT Neisseria meningitidis putative acetylglutamate kinase ArgB FT or Nma1275 TR:Q9JUK2 (EMBL:AL162755) (298 aa) fasta scores: FT E(): 6.6e-60, 60.208% id in 289 aa" FT /db_xref="GOA:Q7VSM2" FT /db_xref="InterPro:IPR001057" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSM2" FT /protein_id="CAE44715.1" FT /translation="MTDTPDPAAVLSPAVKAAVLSEALPYIRRFHGKTIVVKYGGNAMT FT EERLQRSFAHDVVLLKLVGLNPVVVHGGGPQIDDALRRIGKQGTFVQGMRVTDAETMEV FT VEWVLGGQVQQDIVMMINEVGGKAVGLTGKDGMLIQATKKLMVNKDDPSQPLDIGLVGD FT ITRVEPAVVKALQDDQFIPVISPIGYGEDGTAYNINADVVAGKMAEVLGAEKLLMMTNT FT PGVLDKGGKLLRSLSAQTIDELFADGTISGGMLPKISSSLDAAKNGVNSVHIVDGRVPH FT CLLLEILTDQGVGTMISSH" FT misc_feature complement(38857..39486) FT /note="HMMPfam hit to PF00696, Amino acid kinase family" FT CDS 39844..40632 FT /transl_table=11 FT /locus_tag="BP0385" FT /product="putative exported protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3931 TR:Q9HX85 (EMBL:AE004811) (259 aa) fasta FT scores: E(): 3.5e-62, 68.775% id in 253 aa, and to Xylella FT fastidiosa outer membrane protein Xf0873 TR:Q9PF05 FT (EMBL:AE003927) (261 aa) fasta scores: E(): 1.8e-53, FT 57.812% id in 256 aa. Also similar to BP2818, 53.585% FT identity in 265 aa overlap." FT /db_xref="InterPro:IPR004478" FT /db_xref="UniProtKB/TrEMBL:Q7VSM1" FT /protein_id="CAE44716.1" FT /translation="MRMNFVRSALLASAFLLAGGAAQAEKLVVGATQVPHAEILEVVKP FT ALAKEGVELDIKVFTDYVQPNLQLADKQLDANFFQHQPYLDTFNKDRKTNLVSVGLVHV FT EPFGGYSKKIKSLAELKDGATIAIPNDPSNSGRALLLLQKQGLLKLKDPSNIVATPIDI FT AENPKKLKFRELEAAMLPRSFDDLDLALINTNYALEAGLVPTRDALFIEGADSPYANLV FT AARPDNKDAPAVKKLVNALHSEAVRKFIIEKYKGAVVPAF" FT misc_feature 39844..39915 FT /note="Signal peptide predicted for BP0385 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.911 between residues 24 and 25" FT CDS complement(40773..41264) FT /transl_table=11 FT /locus_tag="BP0386" FT /product="putative thioredoxin" FT /note="Similar to Treponema pallidum thioredoxin TptrX FT TR:Q9R788 (EMBL:U95250) (185 aa) fasta scores: E(): FT 1.5e-08, 32.143% id in 140 aa, and to Neisseria FT meningitidis thioredoxin, putative Nmb1958 TR:Q9JXN4 FT (EMBL:AE002544) (166 aa) fasta scores: E(): 8e-16, 34.375% FT id in 160 aa" FT /db_xref="GOA:Q7VSM0" FT /db_xref="InterPro:IPR012335" FT /db_xref="UniProtKB/TrEMBL:Q7VSM0" FT /protein_id="CAE44717.1" FT /translation="MKKIALVLIIAVAAGIGGWFMWRPAQTAPDVAFTTLEGQKITMQD FT LRGKVVLVKFWATSCVTCVKQMPDNIANYNQYHPQGYETIAVAMNYDPPNYVLNFAQTR FT KLPFPVALDTSGELAQAFGNVRLTPTAFLIDKQGQIIKRYLGEYDKAEFQATVQKALAG FT " FT misc_feature complement(41184..41264) FT /note="Signal peptide predicted for BP0386 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.921 between residues 27 and 28" FT misc_feature complement(41199..41249) FT /note="1 probable transmembrane helix predicted for BP0386 FT by TMHMM2.0 at aa 5-22" FT CDS complement(41261..42004) FT /transl_table=11 FT /locus_tag="BP0387" FT /product="putative exported protein" FT /note="Similar to Haemophilus influenzae hypothetical FT protein Hi1658 precursor SW:YRAP_HAEIN (P45301) (193 aa) FT fasta scores: E(): 8.2e-20, 39.037% id in 187 aa, and to FT Pasteurella multocida hypothetical protein Pm0649 TR:Q9CN01 FT (EMBL:AE006101) (194 aa) fasta scores: E(): 5.4e-16, FT 36.464% id in 181 aa" FT /db_xref="InterPro:IPR014004" FT /db_xref="UniProtKB/TrEMBL:Q7VSL9" FT /protein_id="CAE44718.1" FT /translation="MMPDAKTAARPLLLAAALSAAALTLSACAPLVIGGAAATTAVVVT FT DRRTSGVQLEDQNIAFKAESQIAQKLGNTARVNAMVYGGHVLLTGDAPTEEAKAQATAI FT AQSIENVKAVTNQLTVGPAADFSTRSNDTWLTSKVKTALINTKYVPSGTISVTTSRGVV FT YLMGKVTQAEGDYAANAAAGVGGVARVVKLFETISREEAIRLSGSGTKSGEGSSDGTAA FT QKAPIESGAAPAGSGSNGVEAIPIK" FT misc_feature complement(41891..42004) FT /note="Signal peptide predicted for BP0387 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.551 between residues 38 and 39" FT misc_feature complement(41903..41968) FT /note="1 probable transmembrane helix predicted for BP0387 FT by TMHMM2.0 at aa 12-34" FT misc_feature complement(41921..41953) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(42001..42603) FT /transl_table=11 FT /locus_tag="BP0388" FT /product="probable phosphosugar isomerase" FT /note="Similar to Neisseria meningitidis phosphoheptose FT isomerase LpcA or Nma0340 or Nmb2090 TR:Q9JQM1 FT (EMBL:AL162752) (197 aa) fasta scores: E(): 9.3e-41, FT 56.545% id in 191 aa, and to Pseudomonas aeruginosa FT probable phosphoheptose isomerase Pa4425 TR:Q9HVZ0 FT (EMBL:AE004857) (197 aa) fasta scores: E(): 2.8e-36, FT 51.269% id in 197 aa" FT /db_xref="GOA:Q7VSL8" FT /db_xref="InterPro:IPR001347" FT /db_xref="UniProtKB/TrEMBL:Q7VSL8" FT /protein_id="CAE44719.1" FT /translation="MRAMDMTSRMTSHFRDAMALCEQSADALAAPLAAAVDLLFAALAN FT NGRILACGNGGSAADAQHFIAELVGRFERERLPLAGIALNTDTSIMTAVGNDYGFDEIF FT ERQVHALGQPGDVLVAISTSGNSPNVVRAMETAREREMHVIALTGKGGGVMGELITPHD FT VHLCVPHDRTMRIQEVHIILLHALCDGIDALLLGDTE" FT misc_feature complement(42010..42486) FT /note="HMMPfam hit to PF01380, SIS domain" FT CDS complement(join(42603..43106,43108..43137)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0389" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 10. The sequence has been checked FT and believed to be correct. Similar to Escherichia coli FT hypothetical protein YraN or B3148 SW:YRAN_ECOLI (P45465) FT (131 aa) fasta scores: E(): 1.6e-11, 46.774% id in 124 aa, FT and to Xylella fastidiosa hypothetical protein Xf0554 FT TR:Q9PFV3 (EMBL:AE003902) (121 aa) fasta scores: E(): FT 2.5e-09, 47.414% id in 116 aa" FT /db_xref="PSEUDO:CAE44720.1" FT variation complement(43107..43108) FT /note="(C)2 in pertussis; (C)1 in parapertussis and FT bronchiseptica" FT CDS 43204..44142 FT /transl_table=11 FT /locus_tag="BP0390" FT /product="putative tetrapyrrole methylase" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Smc00416 TR:CAC41773 (EMBL:AL591783) (309 aa) fasta FT scores: E(): 5.7e-38, 49.286% id in 280 aa, and to FT Neisseria meningitidis hypothetical protein Nma0342 FT TR:Q9JWJ7 (EMBL:AL162752) (291 aa) fasta scores: E(): FT 1.4e-37, 46.290% id in 283 aa" FT /db_xref="GOA:Q7VSL7" FT /db_xref="InterPro:IPR018063" FT /db_xref="UniProtKB/TrEMBL:Q7VSL7" FT /protein_id="CAE44721.1" FT /translation="MNQDVLSPAQGDAWSRVADRVAAQHWPAATLYVIATPIGNLGDLG FT LRAWQALVRADVIAAEDTRASRTLLDAWGVSTPLMAAHRHNEASAAQAICERLAQGQRV FT ALVSDAGAPAVSDPGARIVRAVREAGYAVVPVPGPSAVIAALMGSGATSDENPAFAFAG FT FLPAKAVARQRWLRQWCALPAPVVMFESPHRLAATLADLREAGGPARLLTVARELTKRF FT EEIATMPLGEAADWLAADAHRGQGEFVLIVHQAPGAQDDEADPADPRTDALLDALLESL FT SVRDAARVAAKVTGLARDVLYARALARKEQP" FT misc_feature 43291..43905 FT /note="HMMPfam hit to PF00590, Tetrapyrrole FT (Corrin/Porphyrin) Methylases." FT misc_feature 43525..43560 FT /note="ScanRegExp hit to PS01296, Uncharacterized protein FT family UPF0011 signature. Confirmed by InterPro eMOTIF FT pattern match." FT CDS 44139..44711 FT /transl_table=11 FT /gene="ogt" FT /locus_tag="BP0391" FT /product="methylated-DNA--protein-cysteine FT methyltransferase" FT /EC_number="2.1.1.63" FT /note="Similar to Escherichia coli FT methylated-DNA--protein-cysteine methyltransferase Ogt or FT B1335 SW:OGT_ECOLI (P09168) (171 aa) fasta scores: E(): FT 8.1e-17, 48.598% id in 107 aa, and to Mycobacterium leprae FT putative methylated-DNA--protein-cysteine methyltransferase FT Ogt or Ml1151 SW:OGT_MYCLE (P52982) (165 aa) fasta scores: FT E(): 1.4e-24, 45.342% id in 161 aa" FT /db_xref="GOA:Q7VSL6" FT /db_xref="HSSP:1EH6" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VSL6" FT /protein_id="CAE44722.1" FT /translation="MNPPSAQATDILYCDTDTPLGPMRLAARGQALCGAWFVDQRDCPA FT AAGWTLDAAHPALRQAAAELEQWFAGRRRAFEVAMQPEGTPFQRQVWQALLELPFGATI FT SYGELARRVGRPKAARAVAGAVGRNPISILIPCHRIIGHDTSLTGFGGGLPRKQALLAH FT EGHRYLSRAARARRVSTTQMELPLGAA" FT misc_feature 44313..44645 FT /note="HMMPfam hit to PF01035, 6-O-methylguanine DNA FT methyltransferase, DNA binding domain" FT misc_feature 44541..44561 FT /note="ScanRegExp hit to PS00374, FT Methylated-DNA--protein-cysteine methyltransferase active FT site." FT CDS complement(44708..45658) FT /transl_table=11 FT /locus_tag="BP0392" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE44723.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 44708..44739 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(44708..45760) FT misc_feature complement(44744..45277) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(45335..45400) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(45729..45760) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 45756..46661 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0393" FT /product="putative membrane protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. The insertion occurred near the FT N-terminus. It is not clear whether this insertion affects FT the function of the protein. Similar to Rhizobium meliloti FT hypothetical protein transmembrane Smb20040 TR:CAC48443 FT (EMBL:AL603642) (286 aa) fasta scores: E(): 3.9e-43, FT 45.683% id in 278 aa, and to Mycobacterium smegmatis FT putative membrane protein DcsA TR:Q9Z6F0 (EMBL:AF072874) FT (301 aa) fasta scores: E(): 4e-37, 46.454% id in 282 aa" FT misc_feature 45825..45881 FT /note="Signal peptide predicted for BP0393 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.655) with cleavage site FT probability 0.391 between residues 19 and 20" FT misc_feature 45837..46208 FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6" FT misc_feature join(45888..45956,45993..46052,46062..46130,46149..46208, FT 46236..46295,46314..46382,46410..46478,46497..46565, FT 46578..46631) FT /note="9 probable transmembrane helices predicted for FT BP0393 by TMHMM2.0 at aa 22-44, 57-76, 80-102, 109-128, FT 138-157, 164-186, 196-218, 225-247 and 252-269" FT misc_feature 46263..46640 FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6" FT CDS 46658..47317 FT /transl_table=11 FT /locus_tag="BP0394" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2306 TR:Q9I1G9 (EMBL:AE004657) (205 aa) fasta FT scores: E(): 2.9e-42, 57.436% id in 195 aa, and to FT Rhizobium meliloti hypothetical transmembrane protein FT Smc01425 TR:CAC46687 (EMBL:AL591789) (197 aa) fasta scores: FT E(): 2.5e-40, 55.959% id in 193 aa" FT /db_xref="GOA:Q7VSL5" FT /db_xref="InterPro:IPR001123" FT /db_xref="UniProtKB/TrEMBL:Q7VSL5" FT /protein_id="CAE44725.1" FT /translation="MIGSDLSSLDQAPLASLSVLMPLVLFTLVNSLTPGPNNVMLASSG FT LTFGFRRTIPHLLGISVGFSIMLLMVGLGLGATLERLPWLYSTLKYGGTAYLLYLAWKI FT ATSGPMESGAERGKPLTFIQAALFQWVNPKAWVMIVSVVATYTPQHGYFANLIIATLVC FT GVVNLPSVGVWAAFGMALRRWLHRPAAVRAFNVGMAVLLVVSLYPVGLDLLALYTG" FT misc_feature join(46691..46759,46817..46885,46904..46963,47123..47191, FT 47228..47287) FT /note="5 probable transmembrane helices predicted for FT BP0394 by TMHMM2.0 at aa 12-34, 54-76, 83-102, 156-178 and FT 191-210" FT CDS 47407..48330 FT /transl_table=11 FT /locus_tag="BP0395" FT /product="putative exported protein" FT /note="Similar to Mycobacterium tuberculosis hypothetical FT 29.7 kDa protein Rv2307c or Mt2364 or Mtcy339.02 FT SW:YN07_MYCTU (Q50658) (281 aa) fasta scores: E(): 7.3e-16, FT 32.491% id in 277 aa, and to Escherichia coli from bases FT 2662068 to 2677236 Bem46 or B2534 TR:P77538 (EMBL:AE000340) FT (293 aa) fasta scores: E(): 9.3e-15, 28.279% id in 244 aa" FT /db_xref="InterPro:IPR000073" FT /db_xref="UniProtKB/TrEMBL:Q7VSL4" FT /protein_id="CAE44726.1" FT /translation="MVSLPFRLSWRRMAAVLLLAAGALGFNQLDAWQRQAIFSPQTDQQ FT RWWREPPAGTEVFDLALPNGDKVHAWYWQSPRRDAPTVLYLHGARWNLNGSAFRMEGWT FT RMGYSMLAIDYRGFGQSTPLLPSEQSASQDAAAALQELARRQPDPARRFIYGHSLGGAI FT AIDLAARPDLPPFAGLIVESSFTSIGAMLGTMKWGWVPGATLLVTQPFASVDKLAALTT FT PMLLLHGTADRVVPHTMSDELYRAAQQVPADLKRLVKIEGASHSGAIRSGRIYEDAVAD FT FVRDAGRGYAGRQGAPTPLTASRPGT" FT misc_feature 47407..47499 FT /note="Signal peptide predicted for BP0395 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.992) with cleavage site FT probability 0.341 between residues 31 and 32" FT CDS complement(48336..48791) FT /transl_table=11 FT /locus_tag="BP0396" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti hypothetical protein FT Sma1780 TR:AAK65640 (EMBL:AE007284) (147 aa) fasta scores: FT E(): 5.4e-17, 39.855% id in 138 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa2880 TR:Q9HZW7 FT (EMBL:AE004714) (171 aa) fasta scores: E(): 1.1e-27, FT 51.064% id in 141 aa" FT /db_xref="InterPro:IPR007896" FT /db_xref="UniProtKB/TrEMBL:Q7VSL3" FT /protein_id="CAE44727.1" FT /translation="MSSSSRQTPKTIKERFLHAFFFEIIAIGLSAPVAAWAMDQPLFDM FT GVLTAVIAWIALLWNMVYNAGFERLERRFGVVRTMPVRVAHAVGFELGLVLIIVPLAAW FT WLAISFWEAFMLDIGLLMFYLPYAFFYNLAYDKLRARWWGRIEPAGA" FT misc_feature complement(join(48387..48452,48465..48530,48591..48647, FT 48678..48743)) FT /note="4 probable transmembrane helices predicted for FT BP0396 by TMHMM2.0 at aa 16-38, 48-67, 87-109 and 113-135" FT misc_feature complement(48681..48791) FT /note="Signal peptide predicted for BP0396 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.991) with cleavage site FT probability 0.986 between residues 37 and 38" FT CDS complement(48788..49891) FT /transl_table=11 FT /locus_tag="BP0397" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli hypothetical 27.8 kDa FT protein in celF-katE intergenic region YdjC or B1733 FT SW:YDJC_ECOLI (P37794) (249 aa) fasta scores: E(): 0.00011, FT 25.993% id in 277 aa, and to Rhizobium loti Mll3087 protein FT TR:Q98H07 (EMBL:AP003001) (272 aa) fasta scores: E(): FT 2.7e-11, 34.420% id in 276 aa" FT /db_xref="InterPro:IPR006879" FT /db_xref="UniProtKB/TrEMBL:Q7VSL2" FT /protein_id="CAE44728.1" FT /translation="MTSERYDEGQQPAHHVGPQRGQAGPFHAGDRDGPMGGGRGASDGN FT EPGNLSQQAAHVEEVSPLRNQAGDVRCRRIAVCGDDFGMNEAIDGALIELAGAGRLSAV FT SCMPLAPAFAADAPALARLDVDLGVHVDFTEAFAGAAPAAPGLAALLWRAYAGQLDPDW FT IDARLASQFDAFERAFGRAPDYVDGHQHVHQLPGILPRLRALLKRRYAGQRIWLRHTAP FT GLQFGLPLAEAAKARLIGALGAGALARAAGQEGWQTNRRMLGVYGFTGGPRRYAGLLHH FT WLMNARDGDLLMCHPGWPQVHGAAHASQRAAEYEVLAHPELGTWLARNGLRIVSLSQVR FT GRQASQESGKVRNVPHFGSFRRLASRL" FT CDS complement(50079..51698) FT /transl_table=11 FT /locus_tag="BP0398" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3556 TR:Q9HY61 (EMBL:AE004776) (549 aa) fasta FT scores: E(): 4.1e-31, 30.059% id in 509 aa, and to FT Salmonella typhimurium hypothetical 61.8 kDa protein in FT pmrG-pmrD intergenic region TR:O52327 (EMBL:AF036677) (548 FT aa) fasta scores: E(): 3.1e-26, 31.445% id in 353 aa" FT /db_xref="GOA:Q7VSL1" FT /db_xref="InterPro:IPR003342" FT /db_xref="UniProtKB/TrEMBL:Q7VSL1" FT /protein_id="CAE44729.1" FT /translation="MTLATRSMQPHAVSPGQARSWPLPAAGWLLLAVGVWLAFLSWMRP FT LALPDEGRYAGVAWDMLRNGSFAVPLIDGMPYFHKPPLYYWLAELSFRLFGVNEWAARL FT PSALAAWASAVALYLFVRRHRDAASATLCVLVLATLPLFFGGAQYANMDMLVAGMITLC FT VLAGADTALRVRGGQAWRAMALATGVCAALAMLAKGLIGLVLPGAILLAWLAWRRDWRG FT LRALLWPPAILAFAVVAVPWFWLMQVRYPGFFQYFFVHQHFERFAQTGFNNVQPFWFYL FT PVIAGLALPWSLWAGGLLRKQFWAADADPDGLRRLALVWLAVIVAFFSMPQSKLVGYIM FT PVLPPLAFLLAEVVMGALRDPAVARATRRMARVSALVAVAICVTAVFVASFNARGSSRE FT LALSLRGELRPDDTLVALHTYPFDLQLYAHAARPMWVVDDWSNPEIPKRDNWRRELYDA FT VQFEPALGERLLVSADTFQQRLCQAPEGSRYWVWGTAADEEAYAPLRGQAARFADARRS FT LWLVLVDEAFKGRVCDGTPTGG" FT misc_feature complement(join(50520..50585,50625..50690,50706..50762, FT 50802..50867,50955..51020,51057..51122,51249..51314, FT 51336..51401,51570..51635)) FT /note="9 probable transmembrane helices predicted for FT BP0398 by TMHMM2.0 at aa 21-43, 99-121, 128-150, 192-214, FT 226-248, 277-299, 312-331, 336-358 and 371-393" FT CDS complement(51695..52753) FT /transl_table=11 FT /locus_tag="BP0399" FT /product="putative glycosyl transferase" FT /note="Similar to Shigella flexneri GtrbI TR:Q9RPZ6 FT (EMBL:AF139596) (306 aa) fasta scores: E(): 1.2e-41, FT 40.000% id in 305 aa, and to Synechocystis sp putative FT glycosyl transferase Sll0501 sll0501 SW:Y501_SYNY3 (Q55487) FT (318 aa) fasta scores: E(): 3.7e-50, 44.118% id in 306 aa" FT /db_xref="GOA:Q7VSL0" FT /db_xref="InterPro:IPR001173" FT /db_xref="UniProtKB/TrEMBL:Q7VSL0" FT /protein_id="CAE44730.1" FT /translation="MFMYTEFRSQLLAGAGTSAAGQSARMAVLAGDGATGVQVSCVVPG FT LNEAANLRVLVPALRACLEQWCASWEIIVVDDGSTDDTAELMAQWSAVEGIRYVQLSRN FT FGKEAALTAGLEAADGDAVICLDADMQHPPELIGDMLAAWRNGADMVYAVRRQRDDEPW FT FKRVGARAFYRLLSTARGVEVPPHAGDFRLMDRRVVEALVALPERTRFMKGLYAWVGFK FT SQAVPYTPQARRHGASHFSAWKLFRLACDGLTAFTTWPLRLVSLIGVLFALLSLSYGGY FT LVADYLISGNAVSGWTTIVTALLFFAGINLISLGVVGEYVARIFDEVKGRPLFIARQRR FT GRAKRAAKARSQ" FT misc_feature complement(join(51791..51856,51902..51967)) FT /note="2 probable transmembrane helices predicted for FT BP0399 by TMHMM2.0 at aa 262-284 and 299-321" FT misc_feature complement(52145..52636) FT /note="HMMPfam hit to PF00535, Glycosyl transferase" FT misc_feature complement(52664..52753) FT /note="Signal peptide predicted for BP0399 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.931) with cleavage site FT probability 0.423 between residues 30 and 31" FT CDS 52883..53377 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0400" FT /product="putative acetyltransferase (pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481. Similar to Streptomyces coelicolor hypothetical FT 20.3 kDa protein Sc1c3.24 TR:O69866 (EMBL:AL023702) (189 FT aa) fasta scores: E(): 1.1e-05, 30.625% id in 160 aa, and FT to Deinococcus radiodurans conserved hypothetical protein FT Dr1396 TR:Q9RUJ0 (EMBL:AE001985) (170 aa) fasta scores: FT E(): 0.34, 32.237% id in 152 aa" FT /db_xref="PSEUDO:CAE44731.1" FT misc_feature 53027..53308 FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family" FT repeat_region 53368..53693 FT CDS 53470..54447 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0401" FT /product="transposase (Pseudogene)" FT /note="Pseudogene. Transposase for IS481 element. The FT transposase lacks a stop codon, hence it is extended by 8 FT codons at its C-terminal end." FT /db_xref="PSEUDO:CAE44732.1" FT repeat_region 53694..54419 FT misc_feature 53851..54384 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(54389..54419) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 54643..55848 FT /transl_table=11 FT /gene="gltS" FT /gene_synonym="gltC" FT /locus_tag="BP0402" FT /product="putative sodium/glutamate symport carrier FT protein" FT /note="Similar to Escherichia coli sodium/glutamate symport FT carrier protein GltS or GltC or B3653 SW:GLTS_ECOLI FT (P19933) (401 aa) fasta scores: E(): 1.3e-51, 40.786% id in FT 407 aa, and to Helicobacter pylori glutamate permease FT Hp1506 TR:O26036 (EMBL:AE000648) (408 aa) fasta scores: FT E(): 3.1e-54, 42.928% id in 403 aa" FT /db_xref="GOA:Q7VSK9" FT /db_xref="InterPro:IPR004445" FT /db_xref="UniProtKB/TrEMBL:Q7VSK9" FT /protein_id="CAE44733.1" FT /translation="MISLTPVQSLLACCLVLVAGRILTTRIGVLSRYSIPDPIVGGLLF FT AVLATALDTWGGIQISLETNIKPTLLLIFFGCIGLTADLKLLARGGPRLIAFLLALIPF FT LVLQNAVGLGLAWLLDMHPLMGLIGGTITLVGGHGTGAAYAARFADINNIQDVMALAMT FT AATIGLVLGGIIGGPVAEWLIRRHKLDPRMAGKDANQVLPEVETTAEAPTATSFITSLT FT AVFVTVVVGTYLAGLVEDAPISLPNFLWCLATGAIIRNFGGYVGIRLDDRVSEIIGSIS FT LSLFLGLTMMTLDLSSVVRLAGPLALMLVAQALVCALYAGWAVFRMLKRDYEAAVMAAA FT FCGFAMGATATAIANMQALTRRHGPAPESFIVVPVTGAFLVDILNVIVLTSLIALPFVG FT GM" FT misc_feature join(54661..54729,54757..54816,54850..54903,54931..54999, FT 55012..55080,55123..55191,55288..55356,55384..55443, FT 55462..55521,55549..55617,55636..55704,55774..55842) FT /note="12 probable transmembrane helices predicted for FT BP0402 by TMHMM2.0 at aa 7-29, 39-58, 70-87, 97-119, FT 124-146, 161-183, 216-238, 248-267, 274-293, 303-325, FT 332-354 and 378-400" FT CDS 55845..57356 FT /transl_table=11 FT /locus_tag="BP0403" FT /product="putative exported protein" FT /note="no significant database matches" FT /db_xref="InterPro:IPR011852" FT /db_xref="UniProtKB/TrEMBL:Q7VSK8" FT /protein_id="CAE44734.1" FT /translation="MTMFIRWLILSACLLLAACSRAPDTEILQRDVGQTLAATYGPDLF FT DIVALRRMGSATDSTAPPGQTRRVVYYDVVLGLKKDLTLGAWDQPGAAALVSLLGAGPR FT SISGVKSSGNAAGDQIVAHASAIYQRDAEQWVHVAPASFTATEAPSLDTGAPPPVTRQL FT LQTLEQITRSVPYSASSTAQHVVQQELERSVARINGRLARLQKGYPLATGPDKGEYLAF FT GQALAAIGRNEQVRVIPLITGGSADNMAMLRSGAAVAALSQADIAQLAYEGKGPFESQG FT PFSGLRALGSLYPELVHIVVRQGDGIATVGALRGKKIALGPSGSAVRTTLETVLAAHGL FT QPGRDYAVIDTPAAAALPQLSEGRVDAVAQVIGTPAAPLRAALTQARLALLPLDRAAID FT KLVQADPTLMALDIPANTYPSQAAAIPTVGMAALLVTTADLTRDEAAHMVDVVYRAGQD FT LLAAGSAQGAQVSAANAGRGLSIPLHDGAVEAFEKLGAPPLPEGR" FT misc_feature 55845..55910 FT /note="Signal peptide predicted for BP0403 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.619 between residues 22 and 23" FT misc_feature 55869..55901 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(57372..58685) FT /transl_table=11 FT /gene="atoE" FT /locus_tag="BP0404" FT /product="putative short-chain fatty acids transporter" FT /note="Similar to Escherichia coli short-chain fatty acids FT transporter AtoE or B2223 SW:ATOE_ECOLI (P76460) (440 aa) FT fasta scores: E(): 2.5e-76, 47.018% id in 436 aa, and to FT Bacillus halodurans short-chain fatty acids transporter FT AtoE or bh0358 TR:Q9KFW3 (EMBL:AP001508) (441 aa) fasta FT scores: E(): 2.8e-96, 57.437% id in 437 aa. Also similar to FT BP0218, 44.988% identity (46.283% ungapped) in 429 aa FT overlap" FT /db_xref="GOA:Q7VSK7" FT /db_xref="InterPro:IPR006160" FT /db_xref="UniProtKB/TrEMBL:Q7VSK7" FT /protein_id="CAE44735.1" FT /translation="MFKLMSRSAVKMVERYLPDPYVFVVLLTLVAAGAAMIIEGQTPMA FT VVRWWGNGFWGLLTFAMQMLLVLVTGYMLASTPLVKRMLARLASLATSAGGAIILVSVV FT SLAASWINWGFGLVVGALFAKQIARQVRVDYRLLVASAYSGFIIWHGGLAGSIPLTIAT FT EGHFSADKIGIIPTGDTIFAVFNLVIVVAMFILVPLVNRLMLPDEKESVYVDPARLEEA FT SVPASDDDKRPAARLENSRLLAWLIAAGGLAYMFDYYVVRGAGLNLNVINFSFLILAIL FT LHGTPRRLLASLDEAIKGGAGIVIQFPFYAGIMAIMMDSGLAATLSEWFVSIASAATLP FT FWTFISAGIVNIFIPSGGGQWAVQSPIVISAAQALGADMPRVAMAVAWGDAWTNMLQPF FT WALPVLAIAGLKAKDIMGYCIIQLLVTGVIISVGLSFF" FT misc_feature complement(57375..58685) FT /note="HMMPfam hit to PF02667, Short chain fatty acid FT transporter" FT misc_feature complement(join(57384..57440,57621..57686,57732..57797, FT 57834..57890,57903..57959,58077..58142,58203..58268, FT 58305..58355,58368..58424,58461..58526,58572..58622)) FT /note="11 probable transmembrane helices predicted for FT BP0404 by TMHMM2.0 at aa 21-38, 53-75, 87-106, 110-127, FT 139-161, 181-203, 242-261, 265-284, 296-318, 333-355 and FT 415-434" FT misc_feature complement(58488..58544) FT /note="ScanRegExp hit to PS00095, C-5 cytosine-specific DNA FT methylases C-terminal signature." FT CDS complement(58876..59055) FT /transl_table=11 FT /locus_tag="BP0405" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2501 TR:Q9I0Y1 (EMBL:AE004677) (55 aa) fasta FT scores: E(): 0.93, 40.476% id in 42 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VSK6" FT /protein_id="CAE44736.1" FT /translation="MHPDTNTMLIIIAAPVALMIVGFGLRDRNLGLGLLGIGLIAALAT FT IAYKAYITFNSFYY" FT misc_feature complement(join(58894..58959,58981..59031)) FT /note="2 probable transmembrane helices predicted for FT BP0405 by TMHMM2.0 at aa 37-54 and 61-83" FT tRNA complement(59331..59405) FT /note="tRNA Val anticodon CAC, Cove score 85.38" FT CDS complement(59465..60199) FT /transl_table=11 FT /gene="dnaQ" FT /gene_synonym="mutD" FT /locus_tag="BP0406" FT /product="DNA polymerase III, epsilon chain" FT /EC_number="2.7.7.7" FT /note="Similar to Escherichia coli DNA polymerase III, FT epsilon chain DnaQ or MutD or B0215 SW:DP3E_ECOLI (P03007) FT (243 aa) fasta scores: E(): 8.2e-45, 52.301% id in 239 aa, FT and to Salmonella typhimurium DNA polymerase III, epsilon FT chain DnaQ or MutD SW:DP3E_SALTY (P14566) (243 aa) fasta FT scores: E(): 2.4e-44, 51.883% id in 239 aa" FT /db_xref="GOA:Q7VSK5" FT /db_xref="HSSP:1J54" FT /db_xref="InterPro:IPR013520" FT /db_xref="UniProtKB/TrEMBL:Q7VSK5" FT /protein_id="CAE44737.1" FT /translation="MRQIIFDTETTGLDPAQGHRIVEIGCVEIVNRMVTGNNLHLYLNP FT DRDSDPEALAVHGLTTEFLADKPRFAEVAEQFLAFIADAELIAHNAAFDVKFFNAELQR FT IGRDPLNTHCENIVDSLLHARSLHPGKRNSLDALCDRYGISNAHRTLHGALLDSQLLAE FT VWLAMTRGQDALLIDVDDQGANANGALVLGKFDASVLTVLAASEAELAEHAAYLQALDK FT AVGGACAWRAIEPLPAESGQPG" FT misc_feature complement(59672..59707) FT /note="ScanRegExp hit to PS01258, Apoptosis regulator, FT Bcl-2 family BH2 domain signature." FT misc_feature complement(59681..60193) FT /note="HMMPfam hit to PF00929, Exonuclease" FT CDS complement(60208..62544) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0407" FT /product="probable membrane protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Pseudomonas aeruginosa FT probable Rnd efflux transporter pa4375 TR:Q9HW27 FT (EMBL:AE004853) (1018 aa) fasta scores: E(): 9.5e-114, FT 44.518% id in 757 aa, and to Vibrio cholerae multidrug FT resistance protein, putative Vc0914 TR:Q9KTI8 FT (EMBL:AE004175) (1036 aa) fasta scores: E(): 1.4e-105, FT 41.153% id in 763 aa. Also similar to BP0827, 41.307% FT identity in 765 aa overlap." FT misc_feature complement(60283..62541) FT /note="HMMPfam hit to PF00873, AcrB/AcrD/AcrF family" FT misc_feature complement(join(60289..60354,60400..60465,60529..60594, FT 60607..60672,60694..60759,61660..61725,61828..61893, FT 61939..62004,62065..62130,62161..62217,62239..62304)) FT /note="11 probable transmembrane helices predicted for FT BP0407 by TMHMM2.0 at aa 103-125, 132-151, 161-183, FT 203-225, 240-262, 296-318, 618-640, 647-669, 673-695, FT 716-738 and 753-775" FT repeat_region 62543..62573 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 62543..63594 FT CDS 62644..63594 FT /transl_table=11 FT /locus_tag="BP0408" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TT94" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TT94" FT /protein_id="CAE44739.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS" FT misc_feature 62902..62967 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 63025..63558 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(63567..63594) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(63726..64124) FT /pseudo FT /transl_table=11 FT /gene="fusA'" FT /gene_synonym="fus'" FT /gene_synonym="far'" FT /locus_tag="BP0409" FT /product="N-terminal region of elongation factor G FT (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. The C-terminal region of this CDS is FT BP0413. Similar to the N-terminal regions of Escherichia FT coli elongation factor G FusA or Fus or Far or B3340 FT SW:EFG_ECOLI (P02996) (703 aa) fasta scores: E(): 6e-35, FT 85.593% id in 118 aa, and to Pasteurella multocida FT elongation factor G FusA or Pm1356 SW:EFG_PASMU (P57938) FT (700 aa) fasta scores: E(): 1.5e-36, 85.000% id in 120 aa. FT The C-terminal region of this CDS is found in BP0413" FT /db_xref="PSEUDO:CAE44740.1" FT misc_feature complement(63762..64103) FT /note="HMMPfam hit to PF00009, Elongation factor Tu family" FT misc_feature complement(63927..63974) FT /note="ScanRegExp hit to PS00301, GTP-binding elongation FT factors signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS complement(64535..65005) FT /transl_table=11 FT /locus_tag="BP0410" FT /product="putative universal stress protein" FT /note="Similar to Bacillus subtilis hypothetical 15.9 kDa FT protein in bglH-wapA intergenic region precursor YxiE or FT N17E SW:YXIE_BACSU (P42297) (148 aa) fasta scores: E(): FT 6.3e-09, 33.775% id in 151 aa, and to Agrobacterium FT tumefaciens Agr_c_878p TR:AAK86309 (EMBL:AE007985) (160 aa) FT fasta scores: E(): 2.6e-13, 41.216% id in 148 aa" FT /db_xref="GOA:Q7VSK4" FT /db_xref="HSSP:1MJH" FT /db_xref="InterPro:IPR006015" FT /db_xref="UniProtKB/TrEMBL:Q7VSK4" FT /protein_id="CAE44741.1" FT /translation="MFKKILIPTDGSPLSAQAANAGICFARSTGAEVVALHVTQPFAAT FT IGFDGMAAAYAITDEDYEKASAEQAEKYLKLILDRAETAGVKAESRAVSNFNVADGIVQ FT AAGEAGCDLIFIGSHGRSGLSRLLLGSVTAKVLSLAHTAVLVYRVKEDKDKK" FT misc_feature complement(64565..64906) FT /note="HMMPfam hit to PF00582, Universal stress protein FT family" FT misc_feature complement(64952..65005) FT /note="Signal peptide predicted for BP0410 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.937) with cleavage site FT probability 0.856 between residues 18 and 19" FT CDS complement(65094..65438) FT /transl_table=11 FT /locus_tag="BP0411" FT /product="conserved hypothetical protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc0924 TR:Q9A9Q0 (EMBL:AE005769) (135 aa) fasta FT scores: E(): 1.6e-09, 42.991% id in 107 aa, and to FT Rhizobium loti Mll8311 protein TR:Q983I8 (EMBL:AP003013) FT (112 aa) fasta scores: E(): 1e-13, 44.860% id in 107 aa" FT /db_xref="GOA:Q7VSK3" FT /db_xref="InterPro:IPR005939" FT /db_xref="UniProtKB/TrEMBL:Q7VSK3" FT /protein_id="CAE44742.1" FT /translation="MSAAIKPLTENFAVAPQLGPADMADVAAAGYKSVIINRPDFEGGP FT DQPTAADVSQAAQALGLQVEYQPVVGSAMTAADVARFAELLRTMPGPVLAYCRTGTRCT FT NLFAAAQQLG" FT CDS complement(65538..66938) FT /transl_table=11 FT /locus_tag="BP0412" FT /product="putative GntR-family transcriptional regulator" FT /note="Similar to Rhizobium meliloti putative FT transcriptional regulator protein Smb20039 TR:CAC48442 FT (EMBL:AL603642) (474 aa) fasta scores: E(): 3.8e-58, FT 40.517% id in 464 aa, and to Pseudomonas aeruginosa FT probable transcriptional regulator Pa5283 TR:Q9HTS1 FT (EMBL:AE004941) (458 aa) fasta scores: E(): 3.7e-44, FT 38.987% id in 454 aa" FT /db_xref="GOA:Q7VSK2" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VSK2" FT /protein_id="CAE44743.1" FT /translation="MRQADATLVTQLADDLARRIDEHGLRPGTRLPSIRRMAEQSGVSR FT FTVVEAYDRLVARGLVQSRHGAGFFVRARSASLTALASARVPQAAPETPVRVDVSWLLR FT NMFRETAAGMPGGAGLLPPEWLDPDMVAAAVRAVGRTVRGNLVSYGSPQGYAPLRQQLA FT SMLQADGVPAHPERNLLTTNGVTHGLDIVARHLIKPGDTVLVEDPAWFVIFGRLAAFGA FT RPVGVPRGPDGPDLAMLDRLAAEHKPRLYIINGAVHNPIGHTLSAGAAYDILRLAERHD FT FMVVEDDTYADLHPGGAMKLAALDRLERVILVGGFSKMLAASLRVGYIAAGAETLQRLT FT DLKMLAGLTSPELGERVVHRVLVEGQYQRHIERVRARVNEARLRSIQALQQLGLSVPHE FT PHAGMFVWADCGRDSEPVARNAAERGMLLAPGTLFSPSGAPSTMLRFSVAMVDTPGIWQ FT SIAAVMAQ" FT misc_feature complement(66726..66905) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT misc_feature 66952..68079 FT /note="HMMPfam hit to PF00009, Elongation factor Tu family" FT CDS 66970..68730 FT /pseudo FT /transl_table=11 FT /gene="fusA'" FT /gene_synonym="fus'" FT /gene_synonym="far'" FT /locus_tag="BP0413" FT /product="C-terminal region of elongation factor G FT (Pseudogene)" FT /note="Pseudogene. The N-terminal region of this CDS is FT BP0409. Similar to the C-terminal region of Escherichia FT coli elongation factor G FusA or Fus or Far or B3340 FT SW:EFG_ECOLI (P02996) (703 aa) fasta scores: E(): 1.3e-149, FT 69.521% id in 584 aa, and to Salmonella typhimurium FT elongation factor G FusA SW:EFG_SALTY (P26229) (703 aa) FT fasta scores: E(): 1.7e-149, 69.178% id in 584 aa. The FT N-terminal region of this CDS is found in BP0409" FT misc_feature 68158..68679 FT /note="HMMPfam hit to PF00679, Elongation factor G FT C-terminus" FT CDS complement(68727..69245) FT /transl_table=11 FT /locus_tag="BP0414" FT /product="putative Mg(2+) transporter" FT /note="Similar to Salmonella typhimurium Mg(2+) transport FT ATPase protein C MgtC SW:ATMC_SALTY (P22037) (231 aa) fasta FT scores: E(): 1.3e-12, 40.972% id in 144 aa, and to FT Agrobacterium radiobacter AttV TR:Q9WWC7 (EMBL:U59485) (194 FT aa) fasta scores: E(): 1e-30, 58.750% id in 160 aa" FT /db_xref="GOA:Q7VSK1" FT /db_xref="InterPro:IPR003416" FT /db_xref="UniProtKB/TrEMBL:Q7VSK1" FT /protein_id="CAE44745.1" FT /translation="MDTVWMEIWTTVRNEFADIPDVAEATRIVLRLGMAVALGGLLGYE FT RERSGKAAGLRTHMLVALGAALFVLVPLQGGMEVGDLSRVLQGVIAGIGFLGAGVIIKL FT GNEGEIRGLTTSAGIWLTAAIGVAAGMGREATALASTLIALFVLAALRRLEKRIAARDD FT KRVVAQPPP" FT misc_feature complement(68763..69152) FT /note="HMMPfam hit to PF02308, MgtC family" FT misc_feature complement(join(68784..68840,68853..68909,68931..68987, FT 69018..69083)) FT /note="4 probable transmembrane helices predicted for FT BP0414 by TMHMM2.0 at aa 83-105, 115-134, 141-160 and FT 164-183" FT CDS 69356..70111 FT /transl_table=11 FT /locus_tag="BP0415" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti hypothetical FT transmembrane protein Smc03171 TR:CAC47481 (EMBL:AL591792) FT (250 aa) fasta scores: E(): 2.2e-67, 75.410% id in 244 aa, FT and to Agrobacterium tumefaciens Agr_l_786p TR:AAK88966 FT (EMBL:AE008238) (275 aa) fasta scores: E(): 8.8e-68, FT 74.502% id in 251 aa. Also similar to the N-terminal FT regions of BP1903 (51.261% identity in 238 aa overlap), and FT to BP1173 (51.250% identity in 240 aa overlap)" FT /db_xref="GOA:Q7VSK0" FT /db_xref="InterPro:IPR005496" FT /db_xref="UniProtKB/TrEMBL:Q7VSK0" FT /protein_id="CAE44746.1" FT /translation="MDYLVSLAQQPAAWAALATLIAMEVVLGIDNLIFISILTNKLPPQ FT HQTKARRIGIGMALILRLALLGTVAFIVQLTQPVFELFGHGFSWRDVILVAGGLFLVWK FT ATKEIHHHVDPNPGDDMFGGKAATLGFAAAVAQILMLDLVFSIDSIITAVGMTEHIPIM FT FVAVIVAVAVMLLAAEPLARFIERNPTVVMLALAFLMMIGMTLIAEGFGAHVPKGYIYA FT AMAFSALVEGLNMMARRAREGRGAGAAGG" FT misc_feature join(69398..69466,69527..69583,69611..69664,69722..69790, FT 69833..69901,69920..69979,70007..70066) FT /note="7 probable transmembrane helices predicted for FT BP0415 by TMHMM2.0 at aa 15-37, 58-76, 86-103, 123-145, FT 160-182, 189-208 and 218-237" FT misc_feature 70004..70027 FT /note="ScanRegExp hit to PS00030, Eukaryotic RNA FT Recognition Motif (RRM) RNP-1 region signature." FT CDS 70307..71539 FT /transl_table=11 FT /locus_tag="BP0416" FT /product="conserved hypothetical protein" FT /note="Similar to Rhodococcus spAD45 putative racemase IsoG FT TR:Q9RBP6 (EMBL:AJ249207) (405 aa) fasta scores: E(): FT 6.1e-48, 37.940% id in 398 aa, and to Streptomyces FT coelicolor putative racemase Scf41.21 TR:Q9RJU8 FT (EMBL:AL117387) (403 aa) fasta scores: E(): 5.3e-41, FT 37.317% id in 410 aa" FT /db_xref="GOA:Q7VSJ9" FT /db_xref="HSSP:1Q7E" FT /db_xref="InterPro:IPR003673" FT /db_xref="UniProtKB/TrEMBL:Q7VSJ9" FT /protein_id="CAE44747.1" FT /translation="MSGPLEGVRILDVTTVLMGPYATQILGDLGADVIKVEPPAGDNVR FT GIGPGRHADMGGIFLHANRSKRSIALDLKNPAGREALLKVAATCDVLVYNVRPQAMARL FT GLSYAEVAQANPSILYVGMYGYDQRGPYAARAAYDDLIQGAVGIPSLSVEAGSDIPRYA FT PSAMVDRIVGISAANAVTAGLYHRARTGQGQAIDVPMFETMAHLILGDHMMGQTFEPPL FT GPPGYPRILNADRRPYATRNGHICVLLYADKHWKAFFELIGQPGRDAADPRFRDIGTRT FT QHIHAIYRLVSDDIASRTTEEWLAAFEAADIPAMPVHTMASLLRDPHLEAIGFFGMVDH FT PSEGAVRMMAVPSRWSGTPPQPRGHAPRLGEHSVDVLKEAGYDDEAIAALVRNGAAIAA FT ARQLPEGTDHD" FT misc_feature 70511..71080 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family" FT CDS 71532..72317 FT /transl_table=11 FT /locus_tag="BP0417" FT /product="probable enoyl-CoA hydratase" FT /EC_number="4.2.1.17" FT /note="Similar to Escherichia coli probable enoyl-CoA FT hydratase PaaG or B1394 SW:PAAG_ECOLI (P77467) (262 aa) FT fasta scores: E(): 1.7e-20, 34.221% id in 263 aa, and to FT Pseudomonas putida PhaB TR:O84979 (EMBL:AF029714) (263 aa) FT fasta scores: E(): 9.8e-21, 33.468% id in 248 aa" FT /db_xref="GOA:Q7VSJ8" FT /db_xref="HSSP:1HZD" FT /db_xref="InterPro:IPR001753" FT /db_xref="UniProtKB/TrEMBL:Q7VSJ8" FT /protein_id="CAE44748.1" FT /translation="MTDFLRHERHGGVLLLTMDRERTRNALSDADAVEALVQACARIGA FT DLSVRAVVLTGSHGVFSSGGNLKTLSDTVGAGLGEPVHSLQAYRSGIQRIPLALYNLEV FT PTIAAVNGPAIGAGCDLACMCDIRLAARQASFAESFVKLGLTPGDGGAWLLPRIVGMSR FT ACELAFTGRSIDAARARELGLVSEVFDADALLPAALALAQEIAQHSGHALRLTKRLLRE FT GQHTRLDTLLELSAGFQALAHHTQEHAGALDAHLSRKRG" FT misc_feature 71571..72101 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT CDS 72384..73355 FT /transl_table=11 FT /locus_tag="BP0418" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 1.8e-32, 36.218% id in 312 aa, and to Pseudomonas putida FT hypothetical 34.5 kDa protein in clcB-clcD intergenic FT region precursor SW:YCLC_PSEPU (Q47100) (329 aa) fasta FT scores: E(): 3.2e-32, 35.294% id in 306 aa" FT /db_xref="GOA:Q7VSJ7" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VSJ7" FT /protein_id="CAE44749.1" FT /translation="MHSRTLALALLSVAALAQGGSARAASDYPAHPVKIIVSLPPGSGA FT DTTARFLSKHLAERFKQPFVVENRPGGNSFIAAQAVATAPPDGYTLFVASNSPMTTNAA FT VFKNLPYDAVKDFAPVAPIARFPMALVVPANSPYRSVADLVAAARAAPGQLNFASGTAT FT YQVVLELFHEQNGIKATHVPYKGTSAALADVAGGVVQYSVADVSAALPLIRGGKLRPLA FT VTSTRRIKDLPDVPTMQESGNKGFEAYAWTAAFFPAKVDPAIVARVSDAVQALVRSQEG FT KAFMEQLGGEPFVGGPDTLAAFQRDELASMRRIAKLANIQQE" FT misc_feature 72384..72455 FT /note="Signal peptide predicted for BP0418 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.873 between residues 24 and 25" FT CDS complement(73366..74283) FT /transl_table=11 FT /locus_tag="BP0419" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Bacillus subtilis als operon regulatory FT protein AlsR SW:ALSR_BACSU (Q04778) (302 aa) fasta scores: FT E(): 1.9e-26, 30.592% id in 304 aa, and to Pseudomonas FT aeruginosa probable transcriptional regulator Pa1826 FT TR:Q9I2R9 (EMBL:AE004609) (301 aa) fasta scores: E(): FT 4.1e-30, 39.781% id in 274 aa" FT /db_xref="GOA:Q7VSJ6" FT /db_xref="HSSP:1IXC" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VSJ6" FT /protein_id="CAE44750.1" FT /translation="MELRQLKQLLVLSETLNFHRAAERLHMAQPPLSTAIKKLEQELGV FT QLFERLPAGLQPTPAAEVVLRYARATLFYADEIQRAAQEGASGKQGMLKVGFVGSSIYS FT LMPQLLSAFRKDYPRVDLVIEESTTVDLLRRLDAHTLDVALVRFPVLEPSTARITLLQA FT DHLMLAVPAGSRYAQRDDVALDELADEPFIGYSRTHVPGMHALIMYAFQQYGVVPHIAQ FT EAIQVQTILSLVESGLGLAIVPKVACRQAGSGVRLVNVPQLAETIKVGIALAVHPDNAT FT PTTANFVDMACRLMQTEPAAGQAR" FT misc_feature complement(73849..74277) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(74143..74235) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT misc_feature complement(74173..74238) FT /note="Predicted helix-turn-helix motif with score 1187 FT (+3.23 SD) at aa 16-37, sequence LNFHRAAERLHMAQPPLSTAIK" FT CDS 74481..75641 FT /transl_table=11 FT /locus_tag="BP0420" FT /product="probable acyl-CoA dehydrogenase" FT /note="Similar to Pseudomonas aeruginosa probable acyl-CoA FT dehydrogenase Pa1022 TR:Q9I4V2 (EMBL:AE004534) (381 aa) FT fasta scores: E(): 2.4e-29, 33.159% id in 383 aa, and to FT Mycobacterium tuberculosis CDC1551 acyl-CoA dehydrogenase, FT putative Mt3665 TR:AAK48023 (EMBL:AE007168) (385 aa) fasta FT scores: E(): 5.6e-27, 33.508% id in 382 aa" FT /db_xref="GOA:Q7VSJ5" FT /db_xref="InterPro:IPR013786" FT /db_xref="UniProtKB/TrEMBL:Q7VSJ5" FT /protein_id="CAE44751.1" FT /translation="MGTIIEALQLAAIPAHDEALRPAVRAFLDEALREMPADRRARSWM FT GHDAEFSRALARQGWLGLTLPVEYGGAGRSNFARFVLSEELLAVGAPVSAHWVADRQTA FT PLILRFGSPAQRAFYLPRIIRGEAFFAIGMSEPDTGSDLASVRTRATPVADGWLLNGRK FT IWTTNAHRSHYMCALVRTSGAPEDRHRGLSQMIFDLALPGIEIRPIRDIAGDAHFCEVL FT FDNVLLPHDALVGEEGSGWRQVMAELALERSGPERIYSSMVLLDGWLAHLRCDAAPQRA FT QVCLAGRLAARLAVLRSMSLAVSQRLEQGADASLAAVLVKDLGTEFEQAVPELIGQALH FT ASPQPAPDDVLMRTLAYLTLINPTFSLRGGTRHILRGIIARELGLR" FT misc_feature 74619..75098 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT misc_feature 74955..75005 FT /note="ScanRegExp hit to PS00237, G-protein coupled FT receptors family 1 signature." FT misc_feature 75135..75236 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT CDS 75668..76696 FT /transl_table=11 FT /locus_tag="BP0421" FT /product="putative acyl-CoA dehydrogenase" FT /note="Similar to Mycobacterium tuberculosis CDC1551 FT acyl-CoA dehydrogenase, putative Mt3669 TR:AAK48027 FT (EMBL:AE007168) (318 aa) fasta scores: E(): 1.4e-09, FT 30.132% id in 302 aa, and to Streptomyces coelicolor FT putative acyl-CoA dehydrogenase Scf37.28C TR:Q9RJX3 FT (EMBL:AL133210) (362 aa) fasta scores: E(): 2.6e-05, FT 28.691% id in 359 aa" FT /db_xref="GOA:Q7VSJ4" FT /db_xref="InterPro:IPR006090" FT /db_xref="UniProtKB/TrEMBL:Q7VSJ4" FT /protein_id="CAE44752.1" FT /translation="MVSTMQQDLYETFARALAGLCPLERVRELEAAADPRAGAARAWNE FT VDALGYGDALSPAEHGGAGLSLADAEGLLRAAGAMALPFPFADTLLARALLRAAGQAVP FT DGPIALGVALPHGAGWRCAPIAGVALAQAVAVEHDGCLALWPAPDAVQPGLFRPRASGA FT PAWRGTPAQAGRAGAPAGAVQAWRNAADAAGMAGAMQAVLDRCVAYVQERQQFGRALGR FT FQAVQQDISMLAEQVAAVAMAARLACASGVLFPDPALAACARLRACEAVPVVCALAHAV FT HGAIGITEELPLGLYTARLHEWRATGMSEDDCAELLGRRVLADGERTLLDVVRGMVSAA FT HA" FT misc_feature 75968..76018 FT /note="ScanRegExp hit to PS00372, PTS EIIA domains FT phosphorylation site signature 2." FT misc_feature 76241..76348 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT CDS 76762..77955 FT /transl_table=11 FT /locus_tag="BP0422" FT /product="probable thiolase" FT /note="Similar to Alcaligenes eutrophus acetyl-CoA FT acetyltransferase PhbA SW:THIL_ALCEU (P14611) (393 aa) FT fasta scores: E(): 1.5e-60, 46.530% id in 389 aa, and to FT Rhizobium meliloti probable thiolase Sma1450 TR:AAK65449 FT (EMBL:AE007266) (396 aa) fasta scores: E(): 7e-83, 60.870% FT id in 391 aa. Also similar to BP0447 (53.684% identity in FT 380 aa overlap)" FT /db_xref="GOA:Q7VSJ3" FT /db_xref="HSSP:1DM3" FT /db_xref="InterPro:IPR002155" FT /db_xref="UniProtKB/TrEMBL:Q7VSJ3" FT /protein_id="CAE44753.1" FT /translation="MSVHPDPVVIVAARRTPIGAFQGALAHYSAPQLGAHALAAAVRQA FT GLQPDAAQEALMGCCLFAGLGQAPARQAVLGAGLPTDVQATTLSKMCGSGMKAAMLAHD FT MLRAGSADVVLAGGMESMSNAPHLIPKARQGYRLGDGQLLDHMYRDGLQDAYEGRLMGH FT YADLAAREYGFSREQQDAYAHESVLRAQRSVAEGEFAEEIAPIAGLARRGAPAAMVAVD FT ETPGLCDVSRLASLKPVFNADGTVTAGNASSISDGAAALVLTRQAHAERLGLAPQARIV FT GHATAALPPGQFPAAPVRAIARLFERVGWDRDSVDLFEINEAFAVVTMIALRELGLPAE FT RVNVNGGACALGHPVGATGARLIVTLMHALRRRGLRRGVACLCLGGGEATAIAVERA" FT misc_feature 76774..77952 FT /note="HMMPfam hit to PF00108, Thiolase, N-terminal domain" FT CDS complement(join(78004..79206,79205..79636)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0423" FT /product="putative fatty acid CoA ligase (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 144. The sequence has been checked FT and believed to be correct. Similar to Escherichia coli FT probable crotonobetaine/carnitine-CoA ligase CaiC or B0037 FT SW:CAIC_ECOLI (P31552) (522 aa) fasta scores: E(): 9.2e-40, FT 29.899% id in 495 aa, and to Pseudomonas diterpeniphila FT coenzyme A ligase TdtL TR:AAK95584 (EMBL:AF274704) (543 aa) FT fasta scores: E(): 3.7e-55, 37.100% id in 531 aa" FT /db_xref="PSEUDO:CAE44754.1" FT misc_feature complement(join(78286..79206,79205..79516)) FT /note="HMMPfam hit to PF00501, AMP-binding enzyme" FT misc_feature complement(79063..79098) FT /note="ScanRegExp hit to PS00455, Putative AMP-binding FT domain signature." FT variation complement(79204..79207) FT /note="GGCC in pertussis; GGatCC in parapertussis" FT CDS complement(79737..80687) FT /transl_table=11 FT /locus_tag="BP0424" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE44755.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 79737..79768 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(79737..80789) FT misc_feature complement(79773..80306) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(80364..80429) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(80758..80789) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(80786..81691) FT /transl_table=11 FT /locus_tag="BP0425" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Alcaligenes eutrophus putative regulator FT of catechol degradation CatR TR:Q9EV43 (EMBL:AF042281) (330 FT aa) fasta scores: E(): 2.1e-15, 28.136% id in 295 aa, and FT to Azorhizobium caulinodans nac gene TR:O66393 FT (EMBL:AJ006238) (311 aa) fasta scores: E(): 1.2e-21, FT 33.333% id in 300 aa" FT /db_xref="GOA:Q7VSJ2" FT /db_xref="HSSP:1IXC" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VSJ2" FT /protein_id="CAE44756.1" FT /translation="MELRQLRYFVETAHRRSITKAASALHIVQPALTAQIKALEDELGT FT QLLERSARGVSLTVDGEAVLRDAVAILRAVDDLKRRHAAAAHSGRAVKIGIPNGMTRTF FT AGQLIERARQQCSFDIELIEGMSGHLLEWLKSGRLDIAVLFASQPLRQLEVRRLTADSI FT DLVGPPGALDAQRPVAFRDLTGYPLILPNAKHGLTRHIQAQARAQGVELRHHTTLDSIA FT EIKHLVSQGVVYTLLAPMVYRLEMEQGLLSATPVCDPALTRELVTATRRSQEAGDDIAQ FT VRALVHEICGARQDPIAAPG" FT misc_feature complement(81263..81685) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(81551..81643) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT misc_feature complement(81581..81646) FT /note="Predicted helix-turn-helix motif with score 1219 FT (+3.34 SD) at aa 16-37, sequence RSITKAASALHIVQPALTAQIK" FT CDS complement(81867..82070) FT /transl_table=11 FT /gene="cspA" FT /locus_tag="BP0426" FT /product="cold shock protein" FT /note="Similar to Escherichia coli cold shock protein CspA FT or B3556 SW:CSPA_ECOLI (P15277) (69 aa) fasta scores: E(): FT 9.5e-12, 55.385% id in 65 aa, and to Bordetella pertussis FT cold shock-like protein CspA SW:CSPA_BORPE (Q9Z5R4) (67 aa) FT fasta scores: E(): 2.9e-16, 68.657% id in 67 aa. Also FT similar to BP1770 (68.657% identity in 67 aa overlap), FT BP1772 (71.186% identity in 59 aa overlap), BP2757 (61.905% FT identity in 63 aa overlap), and to BP3871 (54.545% identity FT in 66 aa overlap)." FT /db_xref="GOA:Q7VSJ1" FT /db_xref="HSSP:1HZA" FT /db_xref="InterPro:IPR012340" FT /db_xref="UniProtKB/TrEMBL:Q7VSJ1" FT /protein_id="CAE44757.1" FT /translation="MQTGIVKWFNDEKGFGFIMPENGGPDLFAHYSEIQGEGHKVLVEQ FT QRVSYVPGHGPKGPMATKITPL" FT misc_feature complement(81870..82070) FT /note="HMMPfam hit to PF00313, 'Cold-shock' DNA-binding FT domain" FT misc_feature complement(81969..82028) FT /note="ScanRegExp hit to PS00352, 'Cold-shock' domain FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 82581..83021 FT /transl_table=11 FT /locus_tag="BP0427" FT /product="putative exported protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc3247 TR:Q9A3F7 (EMBL:AE005988) (108 aa) fasta FT scores: E(): 4, 34.524% id in 84 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VSJ0" FT /protein_id="CAE44758.1" FT /translation="MKRLKKALARVANACLGILPPATTAERPNKAHNRHQPGTHAAILS FT PWRVYRIYARPGHLLLRNDQGRIYDLGIMKGVEPHLTYRLFTRGLKGQGFASRTLLLDD FT IARRIEDGEISDELLTLSECTAEPGADLDRGTHTDVSMRLAR" FT misc_feature 82581..82652 FT /note="Signal peptide predicted for BP0427 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.994) with cleavage site FT probability 0.526 between residues 24 and 25" FT CDS complement(83051..83710) FT /transl_table=11 FT /locus_tag="BP0428" FT /product="putative GntR-family transcriptional regulator" FT /note="Similar to Rhizobium meliloti putative FT transcriptional regulator, GntR family protein Smb20773 FT TR:CAC49865 (EMBL:AL603647) (228 aa) fasta scores: E(): FT 7e-10, 32.203% id in 177 aa, and to Streptomyces coelicolor FT putative GntR-family regulatory protein Scbac8d1.07C FT TR:CAC37896 (EMBL:AL591084) (263 aa) fasta scores: E(): FT 5.8e-22, 38.164% id in 207 aa" FT /db_xref="GOA:Q7VSI9" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VSI9" FT /protein_id="CAE44759.1" FT /translation="MEVNRMARMVPPANLRESVIAQLRSQIVSGAAAPGMIYSVPSLAN FT ELGISTTPVREALLELSRSGLVEPLRNRGFRVQAITLQDLENHFDVRVMLESGALATLA FT RQGLTDTAPLVALADEVAQAVKDQDVGQYIESDRSFHEALVSRAGNPLLTRMIMHLRAD FT MRLYGINSEEGRVRQRASVEEHYEMIDLAVKQQPDAIVALITRHIESWKPLFAAAL" FT misc_feature complement(83480..83656) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT CDS complement(83796..85436) FT /transl_table=11 FT /locus_tag="BP0429" FT /product="delta-1-pyrroline-5-carboxylate dehydrogenase FT precursor" FT /EC_number="1.5.1.12" FT /note="Similar to Homo sapiens FT delta-1-pyrroline-5-carboxylate dehydrogenase precursor FT AldH4a1 or P5cdh or AldH4 SW:PUT2_HUMAN (P30038) (563 aa) FT fasta scores: E(): 7.8e-101, 50.094% id in 531 aa, and to FT Mycobacterium tuberculosis delta-1-pyrroline-5-carboxylate FT dehydrogenase RocA or Rv1187 or Mtv005.23 TR:O50443 FT (EMBL:AL010186) (543 aa) fasta scores: E(): 1.7e-118, FT 58.868% id in 530 aa" FT /db_xref="GOA:Q7VSI8" FT /db_xref="InterPro:IPR016162" FT /db_xref="UniProtKB/TrEMBL:Q7VSI8" FT /protein_id="CAE44760.1" FT /translation="MRPSVNSLMNTSHIANEPVLDYRPGSAERQCLANALDALRVAQSH FT VPLVIGGQRQRGVAARALHCPHDHGHTLGMVEQADELTAGAAVQAAVAAQAEWAAMPFG FT ERAAIFLRAAELLAGPWRQTLNAATMAGQSKTVHQAEIDSACELIDFLRFNVAFAERLQ FT QSQPLSTHGALNRLDYRPLEGFVYAVTPFNFTAIGGNLPCAPALMGNTVVWKPAFTASL FT SNYLILELLEAAGLPPGVINFVPGDSAAVSAAVLRSADFAGLHFTGSTAVFDGLWQQVA FT RNLPGYRTYPRLVGETGGKDFVLAHASADPETLGVALLRGAFEYQGQKCSAASRAYVPA FT SLWPRARQALLDNLATVRMGDVADFGNFMGALIDRKAYERVMRYIDRAPAQGSTVLAGG FT RGDDRVGYFVQPTVIEAADPKAATMQEEIFGPVLSVHVYPDAGWNDVLALVDQTSPYSL FT TGAVFANDRQAIGQAAAALRFAAGNFYVNDKPTGAVVGQQPFGGTRRSGTNDKAGSMLN FT LQRWVSPRTVKETWVPARHYGYPSMDDAA" FT misc_feature complement(83844..85271) FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family" FT misc_feature complement(84435..84470) FT /note="ScanRegExp hit to PS00070, Aldehyde dehydrogenases FT cysteine active site." FT misc_feature complement(84531..84554) FT /note="ScanRegExp hit to PS00687, Aldehyde dehydrogenases FT glutamic acid active site." FT CDS complement(85433..86896) FT /transl_table=11 FT /locus_tag="BP0430" FT /product="short-chain fatty acids transporter" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2002 TR:Q9I2A7 (EMBL:AE004626) (474 aa) fasta FT scores: E(): 7.3e-97, 53.564% id in 463 aa, and to FT Haemophilus influenzae short-chain fatty acids transporter FT AtoE or Hi0772 SW:ATOE_HAEIN (P44051) (447 aa) fasta FT scores: E(): 9.5e-33, 28.788% id in 462 aa" FT /db_xref="GOA:Q7VSI7" FT /db_xref="InterPro:IPR006160" FT /db_xref="UniProtKB/TrEMBL:Q7VSI7" FT /protein_id="CAE44761.1" FT /translation="MPNNHLAAAAPAQGRQAIASPMERFSQAMVAWAEKWFPDAYVFVV FT VACAVVALGAVLHGGDPLAVSKAFGEGFWSIIPFTMQMAMVAITGYVLALSPPVARLLR FT ALAHVPSTPRGAVVFIGTLSILLSLVNWGLSLIFSGLLVREMARRTDLRLDYRAAGAAG FT YLGLGCGFTLGMSSSAAQLQATPASIPASLMPITGVIGFSETILTWQNLVVVILVTVVS FT GLVCYFTAPSPERSLTAQDLGVDLTEPEAQAAQRQRPGDYLEFSPWLTVAVVGLASGWL FT YLTFRSGNPFITMSQLNTYNFVFLLLGLLLHWRPRSFLESFGRAMPSIGGVMLQFPFYG FT GIGYVLTKVANVQGHTLSDAIAHWFVSLAHDSSVFSILVSIYSAFLGFFIPSAGGKWVI FT EAPYIMDAANQIQAHLGWTVMVYNIAETLPNFINPFWMLPLLGILRLKSKDLVGYTAMQ FT FLVHFPIVVAAGAILMHTFSYVPPVIPGQ" FT misc_feature complement(85475..86836) FT /note="HMMPfam hit to PF02667, Short chain fatty acid FT transporter" FT misc_feature complement(join(85478..85543,85712..85777,85856..85921, FT 85958..86014,86045..86110,86213..86278,86357..86422, FT 86486..86551,86612..86677,86717..86773)) FT /note="10 probable transmembrane helices predicted for FT BP0430 by TMHMM2.0 at aa 41-60, 73-95, 115-137, 158-180, FT 206-228, 262-284, 294-313, 325-347, 373-395 and 451-473" FT CDS complement(86927..90313) FT /transl_table=11 FT /locus_tag="BP0431" FT /product="putative molybdopterin oxidoreductase" FT /note="Similar to Salmonella typhimurium thiosulfate FT reductase precursor PhsA SW:PHSA_SALTY (P37600) (758 aa) FT fasta scores: E(): 6.8e-17, 23.279% id in 799 aa, and to FT Archaeoglobus fulgidus molybdopterin oxidoreductase, FT molybdopterin binding subunit Af1203 TR:O29065 FT (EMBL:AE001021) (741 aa) fasta scores: E(): 2.9e-26, FT 26.489% id in 789 aa" FT /db_xref="GOA:Q7VSI6" FT /db_xref="HSSP:1FRR" FT /db_xref="InterPro:IPR001221" FT /db_xref="UniProtKB/TrEMBL:Q7VSI6" FT /protein_id="CAE44762.1" FT /translation="MGKGNMKQVTGYCTLCRSRCGSVNHVENGRLVAVTPLAGHPTGGA FT LCAKGRAAPEMMAESHRLLRPLRRTNPRGAADPGWREIEWSEALDEVAARLAVARRRDG FT AESVAFAVTTPSGTPMVDSFEWVERFVRVFGSPNLIYAVEVCGWHKDYAHALTFGRGIG FT VPDLEHTDTMLLWGHNPARTWLAQAARIAAARQRGARVVVVDPNREGSSQQADLWLRVR FT PGADGALALGAIRHLLHTGRFDHDFVARWSNGPYLVDGASGALLRAVDLWPDADPAARV FT VMQDGSPAASGRGADTARAELFGSWTLRLHDGRACEAVTVMHALRVAVERYTPDEVARL FT AWLDEAELAQFNAIFENAPRLSYHSWTGVGQHTNATQTDRAIATLYALTGACDRKGGNL FT WTVAPPYRAVNGYRELLSPVQRAKALGLDELPLGPPSLGWITARDFCRAVLQQDPYPVR FT TLVSFGSNLLVSQAETARNLEALQALDFHVHVDMSMNPTAMNADIVLPANMPWEREALK FT LGFEITQAAVEHVQLRPRMVEPAGESRADYEIVLELARRLGLRDAFFGADMDACWNHQL FT APLGIDVQALRRQPEGIRFPQPFVHEKYKAVRDGQPVGFPTQDGRVQIHCAALRDIGQP FT ALPVHVEPADTPARHAGAYPLVMSTAKSGWFVHSSHRYVASLRRKSPEPQVYLSVQAAR FT ARGIASGDWVRVRTPYGEVALRAKINADLHENVAIAEFGWWQGCEGLGRVDGAIVGPAS FT SNINAIMTDRHRDPVSGSVPLRATVCDIVRDDARNRGSWSGAREFVLAQKRGIAHDVAE FT FRLLPCDAQALPDFLPGQHVIVSMPGGAARRAYSLTGPNREPAHLSIAVRRVRDGDGPA FT GVMSNALHELAEGARVLLSAPAGVFTPPLRTARPVILMASGIGITPFHGYLEALAQDAG FT PAPSVLLVHACRDGSSHPYGAELKRLAQRIGSVCTLTVYAEPASDDAPGRDYQQRGRLD FT FAWLPPATVAARPLVYLCGSPGFLAFCTDALAARGIPRFDIFSETFTSEKRVPATLAPQ FT PIEIEAEQGGFTWDPSAGTLLDAAERAGLSLPSGCRVGQCESCAMHIVSGQVAHLIDFD FT GSADTCLTCQAVPITPLTLRR" FT misc_feature complement(86948..87160) FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain" FT misc_feature complement(87254..87607) FT /note="HMMPfam hit to PF00175, Oxidoreductase NAD-binding FT domain" FT misc_feature complement(87980..88348) FT /note="HMMPfam hit to PF01568, Molydopterin dinucleotide FT binding domain" FT misc_feature complement(88652..88858) FT /note="HMMPfam hit to PF00384, Molybdopterin FT oxidoreductase" FT misc_feature complement(89138..89170) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(90455..90859) FT /transl_table=11 FT /locus_tag="BP0432" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4173 TR:Q9HWK8 (EMBL:AE004833) (132 aa) fasta FT scores: E(): 1.7e-40, 75.194% id in 129 aa, and to FT Escherichia coli O157:H7 EDL933 Orf, hypothetical protein FT YjgH TR:AAG59447 (EMBL:AE005657) (131 aa) fasta scores: FT E(): 3.7e-30, 62.791% id in 129 aa" FT /db_xref="HSSP:1PF5" FT /db_xref="InterPro:IPR006175" FT /db_xref="UniProtKB/TrEMBL:Q7VSI5" FT /protein_id="CAE44763.1" FT /translation="MSARNVVFPAGRQALYDRNRYSPAIRSNGFLFVSGQVGSQEDGSP FT KQGLQEQVRQAFDNLNAILAAAGCSFEDVVDVTVFMVDPQSRFEQIWEVVPEYWGQAPH FT PTLTAVGVTWLYGFDFEIKVIAKLPRAGEG" FT misc_feature complement(90476..90835) FT /note="HMMPfam hit to PF01042, YjgF family" FT CDS 91003..91989 FT /transl_table=11 FT /locus_tag="BP0433" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa4174 TR:Q9HWK7 (EMBL:AE004834) FT (307 aa) fasta scores: E(): 3.7e-80, 70.588% id in 306 aa, FT and to Rhizobium meliloti putative transcription regulator FT protein Smc01092 TR:CAC41866 (EMBL:AL591783) (296 aa) fasta FT scores: E(): 5.1e-50, 46.918% id in 292 aa" FT /db_xref="GOA:Q7VSI4" FT /db_xref="HSSP:1IXC" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VSI4" FT /protein_id="CAE44764.1" FT /translation="MDRFDAMRAFARVVETGSFTKAADTLHMSKTSVTQLVQQLEARLR FT VRLLNRTTRKVNATADGAAYYERVQQLLADLEDAETSLSGASATPRGRLRVDVPSPFAS FT TILVPALPAFQARYPDILLHLGVSDREVDLIDENVDCVIRGGQISNLSLAARHVGDLQL FT GVYAAPGYLARAGVPAHPGELQDARHRIVGFSWSRARRLFPCAMQRADERIEVAGRHAL FT LLDEGNAYLAAGLAGMGVIGVPTYMAEAHVERGALIRLFGDWRLDPMPLYIAYPQNRHV FT SAKLRAFIDWIVELMARHAPVTDAPPPRRSARLPGGPDAAPPDITGA" FT misc_feature 91012..91431 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 91051..91116 FT /note="Predicted helix-turn-helix motif with score 1530 FT (+4.40 SD) at aa 17-38, sequence GSFTKAADTLHMSKTSVTQLVQ" FT misc_feature 91054..91146 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS complement(join(91976..92293,92292..92939)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0434" FT /product="putative exported protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 216. The frameshift occurs within FT a polymeric tract of (CG)4. The sequence has been checked FT and believed to be correct. Similar to Rhizobium meliloti FT conserved hypothetical protein Sma1927 TR:AAK65716 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 4.2e-39, FT 45.070% id in 284 aa, and to Comamonas testosteroni OrfJ FT protein TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: FT E(): 4.3e-36, 39.048% id in 315 aa" FT /db_xref="PSEUDO:CAE44765.1" FT variation complement(92293..92300) FT /note="(CG)4 in pertussis; (CG)5 in parapertussis" FT misc_feature complement(92877..92939) FT /note="Signal peptide predicted for BP0454 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.995 between residues 21 and 22" FT CDS complement(93003..94235) FT /transl_table=11 FT /locus_tag="BP0435" FT /product="putative dehydratase/racemase" FT /note="Similar to Rhodococcus erythropolis putative FT dehydratase/racemase TR:Q9AH11 (EMBL:AF323606) (400 aa) FT fasta scores: E(): 2.6e-21, 29.398% id in 415 aa, and to FT Caulobacter crescentus hypothetical protein Cc3562 FT TR:Q9A2J9 (EMBL:AE006014) (433 aa) fasta scores: E(): FT 7.5e-21, 29.056% id in 413 aa" FT /db_xref="GOA:Q7VSI3" FT /db_xref="HSSP:1Q7E" FT /db_xref="InterPro:IPR003673" FT /db_xref="UniProtKB/TrEMBL:Q7VSI3" FT /protein_id="CAE44766.1" FT /translation="MNLDFLKGVRVIESSAFIAAPLAGLTLAQFGAEVIRLDMTGGGID FT YERMPRMPGGTSLYWTGLNKQKRSVALDLRKPEGRDLARKLVCAPGPDAGILLTNIGVS FT WLSHAALAEGRPDVITCTIEGNADGSSAVDYTVNCATGYPHATGDGREPVNSPLPAWDA FT CCGYQAAMAVVSVVLRRRQTGQGAELRLALSDVAFALMSHLGTLAQAELLGEDREPLGN FT HLYGAFGRDFVTRDGNRVMVAAISKGQWQSLVRTCGLAEAVAAIEARTGAKLAEEAQRF FT AHRDAIAAACEPWFRARMLAQVRTALDAGGVCWGLYQTATQMLARDGRAGSANPLFERI FT ATAGAGEHWALGTSVREPRAMRRPTQGASRLGQHTDQVLGELLGLSARQLSDLHAAGVV FT AGPSGDPRGAH" FT misc_feature complement(93051..93116) FT /note="Predicted helix-turn-helix motif with score 1034 FT (+2.71 SD) at aa 374-395, sequence HTDQVLGELLGLSARQLSDLHA" FT misc_feature complement(93477..94028) FT /note="HMMPfam hit to PF02515, CAIB/BAIF family" FT CDS complement(94235..94729) FT /transl_table=11 FT /locus_tag="BP0436" FT /product="conserved hypothetical protein" FT /note="Similar to Salmonella enteritidis FkbR2 =TR:AAK97549 FT (EMBL:AF376036) (175 aa) fasta scores: E(): 1.7e-27, FT 55.634% id in 142 aa, and to Streptomyces hygroscopicus FT varascomyceticus FkbR2 TR:Q9KIF1 (EMBL:AF235504) (175 aa) FT fasta scores: E(): 7e-27, 52.055% id in 146 aa" FT /db_xref="GOA:Q7VSI2" FT /db_xref="InterPro:IPR002539" FT /db_xref="UniProtKB/TrEMBL:Q7VSI2" FT /protein_id="CAE44767.1" FT /translation="MSMDAKSMLLARGRLLEDFKTGDQYAHWPGRTITEADNIQFSLLT FT MNRHPTHCDHHYASQTEFGKPLVNSGLTLAIVLGMSVDDISANAVANLGWQEIELLAPV FT HPGDTVYARSEVLSVRESKSRPGQGVVTVRTEGVRADGVVFMRFVRSCLVPSRASLAGA FT R" FT misc_feature complement(94313..94678) FT /note="HMMPfam hit to PF01575, MaoC like domain" FT CDS 94861..95823 FT /transl_table=11 FT /locus_tag="BP0437" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Escherichia coli cyn operon FT transcriptional activator CynR or B0338 SW:CYNR_ECOLI FT (P27111) (311 aa) fasta scores: E(): 2.3e-21, 31.119% id in FT 286 aa, and to Rhizobium meliloti putative transcriptional FT regulator protein Smb20123 TR:CAC48523 (EMBL:AL603642) (298 FT aa) fasta scores: E(): 7.4e-25, 30.104% id in 289 aa" FT /db_xref="GOA:Q7VSI1" FT /db_xref="HSSP:1IXC" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VSI1" FT /protein_id="CAE44768.1" FT /translation="MGKEKSRPLPNINLKLLHTFMLVAEHCSFRQAAELSHRSQAAVTG FT QIKQLEAQLGVDLFHRTTRQVRLTAEGAQLLESARRAAHEMENGLRQIQETVDLKRGRI FT FLSCSTTVSSTRLAPILAAFERDYPGVEVFVRELTSGDMFETVRREQADFGIGPIMELP FT EFDFEPILTENLYAVVPRNLFPDTAEQITLARLASMPLLLLNPGTALRALIDDTARSRG FT LTINAKFQFSQAQTLISMATAGLGAAVLPAMVLPAKPHKDVQVLPIASPRMTRDVAIVR FT LRHRKLTPAAARLAQLVRDLIHGPLGRRTARATTRRPSA" FT misc_feature 94900..95328 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 94939..95004 FT /note="Predicted helix-turn-helix motif with score 1062 FT (+2.80 SD) at aa 27-48, sequence CSFRQAAELSHRSQAAVTGQIK" FT misc_feature 94942..95034 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS complement(95801..97054) FT /transl_table=11 FT /locus_tag="BP0438" FT /product="conserved hypothetical protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc3562 TR:Q9A2J9 (EMBL:AE006014) (433 aa) fasta FT scores: E(): 1.5e-66, 42.750% id in 400 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa3733 FT TR:Q9HXQ9 (EMBL:AE004792) (409 aa) fasta scores: E(): FT 2.3e-59, 40.786% id in 407 aa" FT /db_xref="GOA:Q7VSI0" FT /db_xref="HSSP:1PQY" FT /db_xref="InterPro:IPR003673" FT /db_xref="UniProtKB/TrEMBL:Q7VSI0" FT /protein_id="CAE44769.1" FT /translation="MQSFYQEPAVAADLKEAPHPPKALSGLRVLDIATFLAAPFCGTIM FT ADFGADVIKIEQPRGGDSLRKFGTPSPCGDTYMWMSEARNKRFVTLDLRTPEGAALFKE FT LVRESDVVLENFRPGTLEKWGLGYDVLSELNPGLILLRVSAYGQDGPKREEPGFARIAH FT AFGGLAHLAGEPDGPPVVPGSTSLADYISGLWGAIGVLMALQARNHTGLGQVVDIGLYE FT SVFRLLDELAPVYAATGFVRRRLGADVPNVAPHSHYQTRCGQWVAIACSNDRMFERLAS FT AMGAPGLAGDARFATAAARAENRQAINALVAAWSARFDLQALLDLCRNEGVPCSKVYSI FT EDIFQDEQYRARGNLMEVDDPRIGKTVLPASVPRLSGTPARFLRAGGALGQDNAGVYEE FT LLGVCGERLAALRQTGVV" FT misc_feature complement(96218..96790) FT /note="HMMPfam hit to PF02515, CAIB/BAIF family" FT repeat_region 97074..97105 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 97074..98126 FT CDS 97176..98126 FT /transl_table=11 FT /locus_tag="BP0439" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE44770.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 97434..97499 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 97557..98090 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(98095..98126) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(98123..98467) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0440" FT /product="N-terminal region of isovaleryl-CoA dehydrogenase FT (Pseudogene)" FT /EC_number="1.3.99.10" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. The C-terminal region of this CDS is FT BP0444. Similar to Pseudomonas aeruginosa probable acyl-CoA FT dehydrogenase Pa2015 TR:Q9I296 (EMBL:AE004628) (387 aa) FT fasta scores: E(): 1.2e-31, 73.684% id in 114 aa, and to FT Rhizobium meliloti putative isovaleryl-CoA dehydrogenase FT protein TR:CAC49100 (EMBL:AL603644) (387 aa) fasta scores: FT E(): 8.5e-26, 66.972% id in 109 aa" FT /db_xref="PSEUDO:CAE44771.1" FT misc_feature complement(98126..98440) FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT CDS complement(98681..99055) FT /transl_table=11 FT /locus_tag="BP0441" FT /product="MerR-family transcriptional regulator" FT /note="Similar to Rhizobium loti probable transcriptional FT regulator Mll1317 TR:Q98KU4 (EMBL:AP002997) (128 aa) fasta FT scores: E(): 1.2e-16, 44.915% id in 118 aa, and to FT Pseudomonas aeruginosa probable transcriptional regulator FT Pa2016 TR:Q9I295 (EMBL:AE004628) (134 aa) fasta scores: FT E(): 1.9e-16, 50.000% id in 122 aa" FT /db_xref="GOA:Q7VSH9" FT /db_xref="InterPro:IPR015358" FT /db_xref="UniProtKB/TrEMBL:Q7VSH9" FT /protein_id="CAE44772.1" FT /translation="MSTWTISELAREFDITPRTIRFYEDQGIVSPLRDGRNRVYSTRDR FT ARLKLALRGKRLGLLLSEIRSLIDMYDGPGDTAPQLRHYLTILAQHRATLTQQQRDIED FT TLAEIAQQELQCQRLLAQKQ" FT misc_feature complement(98936..99037) FT /note="HMMPfam hit to PF00376, Bacterial regulatory FT proteins, merR family" FT misc_feature complement(98981..99046) FT /note="Predicted helix-turn-helix motif with score 2015 FT (+6.05 SD) at aa 4-25, sequence WTISELAREFDITPRTIRFYED" FT CDS 99130..100188 FT /transl_table=11 FT /locus_tag="BP0442" FT /product="metallo-beta-lactamase family protein" FT /note="Similar to Caulobacter crescentus FT metallo-beta-lactamase family protein Cc0395 TR:Q9AB39 FT (EMBL:AE005712) (317 aa) fasta scores: E(): 2.2e-44, FT 39.812% id in 319 aa, and to Deinococcus radiodurans FT conserved hypothetical protein Dr2076 TR:Q9RSP8 FT (EMBL:AE002043) (347 aa) fasta scores: E(): 1.8e-14, FT 29.969% id in 327 aa" FT /db_xref="GOA:Q7VSH8" FT /db_xref="InterPro:IPR001279" FT /db_xref="UniProtKB/TrEMBL:Q7VSH8" FT /protein_id="CAE44773.1" FT /translation="MNPNEQKLQYPWDQTQPEPGVALVVAEGVKWIRMPLPFALDHINL FT WLLRDEIDGRQGWTIVDCGIARDEVKTIWEQVFENELEGLPVLRVLVTHMHPDHIGLAH FT WLCERWNAPLWISMTDFMVASLWSRRTDGGASGGQAAVEHFARHGLTDTDAQEQIRQRA FT GYYPNLVSAVPSRYTRLLHGDEVAIGGHPWRVIVGYGHAPEHVSLFSPAHKVLISSDMV FT LPRISTNVSVFDHEPDANPLPLYLRSLDRYDDLPADTVVLPSHGRPFVGLHERIAQQHA FT HHDERLAEVLQACATPQSTADIVPVLFKRKLDLHQLTFAMGEALAHLHALYFEGKLKRR FT TDADGIVRFQAA" FT misc_feature 99241..99924 FT /note="HMMPfam hit to PF00753, Metallo-beta-lactamase FT superfamily" FT CDS complement(100212..101162) FT /transl_table=11 FT /locus_tag="BP0443" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE44774.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 100212..100243 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(100212..101263) FT misc_feature complement(100248..100781) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(100839..100904) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(101233..101263) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 101262..102098 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0444" FT /product="C-terminal region of isovaleryl-CoA dehydrogenase FT (Pseudogene)" FT /EC_number="1.3.99.10" FT /note="Pseudogene. This CDS is the C-terminal region of FT BP0440 which was disrupted by the insertion of IS481 FT element. Similar to Solanum tuberosum isovaleryl-CoA FT dehydrogenase precursor Ivd2 TR:Q9FS87 (EMBL:AJ278988) (401 FT aa) fasta scores: E(): 3.2e-70, 67.391% id in 276 aa, and FT to Rhizobium meliloti putative isovaleryl-CoA dehydrogenase FT protein TR:CAC49100 (EMBL:AL603644) (387 aa) fasta scores: FT E(): 3.2e-79, 75.451% id in 277 aa" FT misc_feature 101262..102074 FT /note="HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, FT C-terminal domain" FT misc_feature 101304..101342 FT /note="ScanRegExp hit to PS00072, Acyl-CoA dehydrogenases FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 101955..102014 FT /note="ScanRegExp hit to PS00073, Acyl-CoA dehydrogenases FT signature 2." FT CDS join(102137..103378,103382..103996) FT /pseudo FT /transl_table=11 FT /gene="aceK" FT /locus_tag="BP0445" FT /product="isocitrate dehydrogenase kinase/phosphatase FT (Pseudogene)" FT /EC_number="2.7.1.116" FT /note="Pseudogene. This CDS contains an in-frame TAG stop FT codon. The sequence has been checked and believed to be FT correct. Similar to Escherichia coli isocitrate FT dehydrogenase kinase/phosphatase AceK or B4016 FT SW:ACEK_ECOLI (P11071) (578 aa) fasta scores: E(): 8.7e-78, FT 41.426% id in 589 aa, and to Pseudomonas aeruginosa FT isocitrate dehydrogenase kinase/phosphatase AceK or Pa1376 FT TR:Q9I3W8 (EMBL:AE004567) (577 aa) fasta scores: E(): FT 1.6e-84, 43.294% id in 589 aa" FT /db_xref="PSEUDO:CAE44776.1" FT misc_feature 103115..103138 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT variation 103379..103381 FT /note="in-frame TAG stop codon in pertussis; GAC in FT parapertussis and bronchiseptica" FT CDS 104044..105213 FT /transl_table=11 FT /locus_tag="BP0447" FT /product="acetyl-CoA acetyltransferase" FT /EC_number="2.3.1.9" FT /note="Similar to Clostridium acetobutylicum acetyl-CoA FT acetyltransferase Thl or Cac2873 SW:THL_CLOAB (P45359) (392 FT aa) fasta scores: E(): 4e-66, 50.674% id in 371 aa, and to FT Pseudomonas putida FadaX fadaX TR:Q9AHY0 (EMBL:AF290950) FT (397 aa) fasta scores: E(): 4e-84, 61.579% id in 380 aa" FT /db_xref="GOA:Q7VSH7" FT /db_xref="HSSP:1DM3" FT /db_xref="InterPro:IPR002155" FT /db_xref="UniProtKB/TrEMBL:Q7VSH7" FT /protein_id="CAE44777.1" FT /translation="MLSFPSPARPWAACWACLSGLAAHELGSAAIKAAIERAGIKPEQV FT DEVIMGNVLQAGQGQAPARQAALGAGLPLGVGCTTIHKVCGSGLKAAMFGHDLLTADSV FT DVVVAGGQESMSNAPYLLLKGRQGYRYGHNTVYDHMALDGLEDAYDRGKAMGVFAEDCA FT TKYSFTREQQDAFSLESLRRARAASEDGSFKWEITPVTVAGRKGDTVIDTDEAPTKAMP FT EKIPTLKPAFKKDGTVTAANSSSISDGAAAMVLMRASTAEKLGVKPLARIVAHAQHAQE FT PNWFTTAPVGALKNLFKKTGWQASDVDLYEINEAFAVVTMATMKDFDLPHDKVNVHGGA FT TALGHPIGASGARLMATLVGALRKTGGKRGVATLCIGGGEAVAMAIEML" FT misc_feature 104044..104118 FT /note="Signal peptide predicted for BP0447 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.625) with cleavage site FT probability 0.181 between residues 25 and 26" FT misc_feature 104059..105210 FT /note="HMMPfam hit to PF00108, Thiolase, N-terminal domain" FT misc_feature 105151..105192 FT /note="ScanRegExp hit to PS00099, Thiolases active site." FT CDS 105308..106921 FT /transl_table=11 FT /gene="accB" FT /locus_tag="BP0448" FT /product="carboxyltransferase subunit of acetyl-CoA FT carboxylase" FT /EC_number="6.4.1.4" FT /note="Similar to Myxococcus xanthus acetyl-CoA carboxylase FT carboxyltransferase AccB TR:Q9FAF6 (EMBL:AB039884) (538 aa) FT fasta scores: E(): 1.7e-93, 47.330% id in 543 aa, and to FT Homo sapiens 3-methylcrotonyl-Coa carboxylase subunit MccB FT TR:AAK49409 (EMBL:AF261884) (563 aa) fasta scores: E(): FT 8.1e-142, 68.182% id in 528 aa" FT /db_xref="GOA:Q7VSH6" FT /db_xref="InterPro:IPR011762" FT /db_xref="UniProtKB/TrEMBL:Q7VSH6" FT /protein_id="CAE44778.1" FT /translation="MPMPIIESRIDTRSQDYADNARAMQAQLDDLNQKLARTAQGGSET FT ARAKHVGRGKLLPRERVEQLVDPGSPFLELSPMAAHGMYGDEAPGAGMITGVGRIAGTE FT CVIVCNDATVKGGTYYPMTVKKHLRAQEIAAQNRLPCVYLVDSGGANLPRQDEVFPDRD FT HFGRIFYNQAVMSSQGIAQIAVVMGSCTAGGAYVPAMCDESIIVRDQGTIFLGGPPLVK FT AATGEEVSAEDLGGGDVHTRLSGVADHLAANDMHALQLARNAVARLNRAKPAALALAPV FT REPRYDASELNGIIPADTRKPYDVREVIARIVDGSEFDEFKARYGTTLVTGFAHIHGMP FT VGIVANNGILFSESAQKGAHFIELCAQRKIPLVFLQNITGFMVGRKYENEGIARHGAKM FT VTAVATAAVPKFTILIGGSFGAGNYGMCGRAYSPRMLFMWPNARISVMGGEQAASVLAT FT VKRDGIEARGAQWSGAEEDAFKQPIREQYEREGHPYYATARLWDDGIIAPADTRRVLGL FT ALSAALNAPIEDTRFGVFRM" FT misc_feature 105410..106912 FT /note="HMMPfam hit to PF01039, Carboxyl transferase domain" FT CDS 106968..108989 FT /transl_table=11 FT /gene="accA" FT /gene_synonym="accC" FT /gene_synonym="FabG" FT /locus_tag="BP0449" FT /product="biotin carboxylase subunit of acetyl-CoA FT carboxylase" FT /EC_number="6.4.1.4" FT /note="Similar to Myxococcus xanthus acetyl-Coa Carboxylase FT biotin carboxylase subunit AccA TR:Q9FAF5 (EMBL:AB039884) FT (573 aa) fasta scores: E(): 8.6e-85, 46.667% id in 570 aa, FT and to Escherichia coli biotin carboxylase AccC or FabG or FT B3256 SW:ACCC_ECOLI (P24182) (449 aa) fasta scores: E(): FT 6.6e-76, 51.106% id in 452 aa. Also similar to BP0889 FT (50.224% identity in 446 aa overlap), and BP2996 (47.903% FT identity in 453 aa overlap)" FT /db_xref="GOA:Q7VSH5" FT /db_xref="HSSP:1DV1" FT /db_xref="InterPro:IPR013817" FT /db_xref="UniProtKB/TrEMBL:Q7VSH5" FT /protein_id="CAE44779.1" FT /translation="MFSTLLIANRGEIACRVAATARRMGLRTVAVYSDADANARHVAAC FT DVAVHIGGAEPRASYLRADAILQAARDTGAQAIHPGYGFLSENEGFAEAVAQAGMVFVG FT PPAGAIAAMGSKSAAKALMERAGVPLVPGYHGEDQDPQFLRQQADAIGYPVLIKASAGG FT GGKGMRVVEESAAFADALASCQREASASFGDDRVLIERYLQKPRHIEIQVFADSHGNCV FT YLFERDCSVQRRHQKVIEEAPAPGMTPERRRAMGEAAVAAARAVGYVGAGTVEFIAEPD FT GRFYFMEMNTRLQVEHPVTEMITGHDLVEWQLRVAASQPLPAAQDELRLDGHAIEARIY FT AENPEKGFLPSIGTLAYLGLPAHTAFANGEVRVDGGVRMGDTITPYYDPMIAKLIVHGA FT DREQARARMIQALAHTQAVGVQTNAAFLGRLMRDEAFATADLDTGLIERRRATLLPEPQ FT PAGADVLALASAAVLVRQGLAQPQGEAGKTADPWDARDGWRLGGRYRQTLCWVDNGERR FT DIEITREGGQWRIGAAPAAGQAFSWHAQPSANPQLSYGLRITLDGRESAGTVVLHAGKA FT YVFHDGATHILDLYDALAHAQDDAEGHGGGLTAPMPGKIISIAVAVGDKVEKGQALLVM FT EAMKMEHTITAPAAGEVAGLFYAVGDQVGEGAALIEVK" FT misc_feature 106977..108095 FT /note="HMMPfam hit to PF00289, Carbamoyl-phosphate synthase FT L chain, N-terminal domain" FT misc_feature 107424..107468 FT /note="ScanRegExp hit to PS00866, Carbamoyl-phosphate FT synthase subdomain signature 1. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 107823..107846 FT /note="ScanRegExp hit to PS00867, Carbamoyl-phosphate FT synthase subdomain signature 2." FT misc_feature 108780..108983 FT /note="HMMPfam hit to PF00364, Biotin-requiring enzyme" FT misc_feature 108852..108905 FT /note="ScanRegExp hit to PS00188, Biotin-requiring enzymes FT attachment site." FT CDS complement(109018..109263) FT /transl_table=11 FT /locus_tag="BP0450" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3012 TR:Q9HZJ4 (EMBL:AE004726) (124 aa) fasta FT scores: E(): 9.3e-07, 42.667% id in 75 aa, and to FT Clostridium acetobutylicum hypothetical protein Cac1208 FT TR:Q97JR5 (EMBL:AE007634) (173 aa) fasta scores: E(): 0.75, FT 33.333% id in 57 aa" FT /db_xref="InterPro:IPR012868" FT /db_xref="UniProtKB/TrEMBL:Q7VSH4" FT /protein_id="CAE44780.1" FT /translation="MAMQDFRPGVYRHYKGDHYLALGLARADETDEVVVVYTRLYARAG FT LPMSTRLLRIWNETVDTGAGPQPRFAYVGHVTPEQG" FT CDS complement(109277..110467) FT /transl_table=11 FT /gene="argM" FT /gene_synonym="astC" FT /gene_synonym="cstC" FT /locus_tag="BP0451" FT /product="succinylornithine transaminase" FT /EC_number="2.6.1.-" FT /note="Similar to Escherichia coli succinylornithine FT transaminase ArgM or AstC or CstC or B1748 SW:ARGM_ECOLI FT (P77581) (406 aa) fasta scores: E(): 1.9e-57, 44.503% id in FT 382 aa, and to Pseudomonas aeruginosa probable class III FT pyridoxal phosphate-dependent aminotransferase Pa0530 FT TR:Q9I606 (EMBL:AE004489) (393 aa) fasta scores: E(): FT 2e-65, 48.438% id in 384 aa" FT /db_xref="GOA:Q7VSH3" FT /db_xref="InterPro:IPR015421" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSH3" FT /protein_id="CAE44781.1" FT /translation="MEFSQFKVNALMEITARPDLVFVRGQGSWLEDHAGKRYLDFVQGW FT AVNTLGHCAPEMKRAMAEQADKLMNPSPAFYNLPSIELAQRLTSASCFDRVFFANSGAE FT ANEGAIKLARKWGRVNRNGAYKIITMNHGFHGRTLATMSASGKPGWDTMFAPQVEGFPK FT AEINDLDSVRALIDAQTVAVMLEPVQGEAGVIPATREFMQGLRKLADEHGILFIVDEVQ FT TGMGRTGSLFAYQQFDVIPDIMTLAKGIGGGIPLAALLAREEVCVFAHGDQGGTYNGNP FT LCAAVGVAVFDTITAPGFMEAAQARTRQLSEGLLALSAKWSLRGERGMGLLRALVLDRD FT DAPAIVEAARMLAPEGLLLNAPRGNLLRFMPALNVTEADMARMLEQLDGVIAAVRK" FT misc_feature complement(109349..110389) FT /note="HMMPfam hit to PF00202, Aminotransferase class-III" FT misc_feature complement(109709..109822) FT /note="ScanRegExp hit to PS00600, Aminotransferases FT class-III pyridoxal-phosphate attachment site. Confirmed by FT InterPro eMOTIF pattern match." FT CDS 110663..111628 FT /transl_table=11 FT /locus_tag="BP0452" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta FT scores: E(): 1.9e-42, 41.956% id in 317 aa, and to FT Agrobacterium tumefaciens Agr_l_312p TR:AAK88723 FT (EMBL:AE008213) (329 aa) fasta scores: E(): 3.3e-40, FT 41.009% id in 317 aa" FT /db_xref="GOA:Q7VSH2" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VSH2" FT /protein_id="CAE44782.1" FT /translation="MNRVFAGLCAGLALAAASFAAHADYPERPIRMLVPFPPGQATDIF FT ARALAEKLGADLKQPIVVENRAGAGSNIGMGEAARATPDGYTLVVAGSAAAVNQTLYKN FT INYSLTKDFAPVSGVFSVPLVFLATPASGIDSLQKLVTQARAHPGELAYASAGIGGTQH FT LSAEMFKAAADIDIRHIPYKGSGPAQADFLGHQVPLMVDSVTAGLPHIKTGKAVPLAVT FT TAGRLAQLPDVPTVAESGYPGFEAIGWAAVLAPAGTPPAVTELLSRHIGQALGSAELAR FT FLRERGAEPMPTTPQATGQFIAAEVQKWGDAVRRSGAQVD" FT misc_feature 110663..110731 FT /note="Signal peptide predicted for BP0452 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.990 between residues 23 and 24" FT misc_feature 110672..110731 FT /note="1 probable transmembrane helix predicted for BP0452 FT by TMHMM2.0 at aa 25-44" FT CDS complement(111651..112790) FT /transl_table=11 FT /locus_tag="BP0453" FT /product="low-specificity D-threonine aldolase" FT /note="Similar to Arthrobacter sp metal-activated pyridoxal FT enzyme TR:O82872 (EMBL:AB010956) (379 aa) fasta scores: FT E(): 8.3e-99, 71.698% id in 371 aa, and to Alcaligenes FT xylosoxydans xylosoxydans low-specificity D-threonine FT aldolase TR:Q9RBG6 (EMBL:AB026892) (377 aa) fasta scores: FT E(): 8.3e-44, 45.195% id in 385 aa" FT /db_xref="InterPro:IPR001608" FT /db_xref="UniProtKB/TrEMBL:Q7VSH1" FT /protein_id="CAE44783.1" FT /translation="MNASVAPILPPAARAGQALCDVDTPSLALDLAAFERNLRVMQDWA FT ERLGVALRPHAKAHKCPEVALRQLALGARGICCQKVSEALPFVAAGVRDIHISNEVVGP FT VKLALLGELARQADISVCVDHPDNLEALAQAMERAGARVTVLVEVDVGQGRCGVTDPQV FT VLALALARRADAAAGLRFGGLQAYHGSVQHMRTQADRAAVCAEVARAAAAHADALRAAG FT LACPTITGSGTGSAQFDAASGVFTELQAGSYPFMDADYGDNEWAETLRFEPSLYVLSTV FT MSTPAAGRVVLDAGLKSSTAECGPPRVAGRAGLTYLAANDEHGVARVEPGAPAPALGKM FT VRLVPSHVDPTFNLHDSLVVFRDDVVVDLWPIAARGLSR" FT CDS 113002..113964 FT /transl_table=11 FT /locus_tag="BP0454" FT /product="putative exported protein" FT /note="Similar to Brucella abortus 31 kDa immunogenic FT protein precursor Bcsp31 SW:BCSP_BRUAB (P12920) (329 aa) FT fasta scores: E(): 1.8e-68, 61.329% id in 331 aa, and to FT Archaeoglobus fulgidus immunogenic protein Af0635 TR:O29620 FT (EMBL:AE001060) (330 aa) fasta scores: E(): 1.7e-37, FT 45.098% id in 306 aa" FT /db_xref="InterPro:IPR011852" FT /db_xref="UniProtKB/TrEMBL:Q7VSH0" FT /protein_id="CAE44784.1" FT /translation="MSMKSWIKTLTLALAVAGAATSANAQQFFRIGTGGTAGTYYPVGG FT MIANSISQPGKLIATAVASNGSVANINGILGGSLEAGFTQSDVAYWAYSGTGTFDGKPK FT AQDLRLIATLYPESIHLVARKGSGIKTVADLRGKRVSMDEPGSGTLVDVRLILGAFGMT FT DKDIKAEYLKPNQAGDKLKDGGLDAFFFVSGAPAGAISELASSGAGIELVPIVGPEIDK FT LRSQQEFFTPDTIAANTYQNVGEVKTISINAQLVTSAKLPEQTVYDIVKALYSDATRKT FT LDNGHAKGKLITKENAVKGAGIPFHAGAEKYYKEVGLLK" FT misc_feature 113002..113076 FT /note="Signal peptide predicted for BP0454 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.989 between residues 25 and 26" FT CDS 114088..116112 FT /transl_table=11 FT /locus_tag="BP0455" FT /product="putative membrane protein" FT /note="Similar to Bacillus halodurans Bh2945 protein Bh2945 FT TR:Q9K8Q8 (EMBL:AP001517) (656 aa) fasta scores: E(): FT 1.6e-57, 41.705% id in 657 aa, and to Pasteurella multocida FT hypothetical protein Pm1580 TR:Q9CKN1 (EMBL:AE006195) (660 FT aa) fasta scores: E(): 1.5e-56, 37.065% id in 661 aa" FT /db_xref="InterPro:IPR011853" FT /db_xref="UniProtKB/TrEMBL:Q7VSG9" FT /protein_id="CAE44785.1" FT /translation="MQIDHDKTQQLTEKYDSEIRFRPLDKTATWIVSILLVTLSIFHYY FT TAGFGLLREATHRGVHLAFVLSLIFLVFGFSKAHYQREPKSTLLCPGGVPLYDWAIAIV FT LALSVLYIPYIFEDLAFRVGNPLPMDVAMGTILIVGLLEGTRRAMGWPLPIIAMVFLAY FT AAFGPYFPGLLQHAGNNWPQIVNHMYLTSQGIYGVAVGVVATYVFHFVLFGVLATRIGL FT GQLFLDVASTIAGRYAGGPAKVSVFGSAMFGMLSGSSVANAVTVGSLTIPAMIRIGYPR FT HFAAGVEAASSTGGQITPPIMGAAAFLMIEFLGIPYQQIAIAGIFPAFLYFFGMFMQVH FT FEAKREGLRGLTEEEMPTLKASFKKRWPTLLPLIMLIGVLASGRTPYLAAFAGITGCIV FT VGLLNPMQRLRLRDLYEAFETGAKYALAVGAAAGTVGLVIGVVTLTGVGFKISYIVISA FT AQAIAGGVGTIIPDVVANTQTLTLIAALVMTGIVCILMGCGIPTTANYIIMVAVAAPTL FT VQLGVQPIAAHFFVFYFGILADITPPVALAAYAAAGMAGSDPFKTGNTAFRLGITKLIV FT PFVFVFSPSLLISVQGFTWYDFFTTLVGCMVGLVLLSAAFSRYMLVEMKSWERWVCVVG FT ALLTILPGLTSGLVGLAICIPVFLRQLAQLKLENGAKAA" FT misc_feature join(114175..114243,114262..114315,114373..114435, FT 114454..114513,114541..114609,114670..114738, FT 115030..115098,115246..115314,115357..115425, FT 115444..115512,115522..115581,115600..115668, FT 115678..115746,115783..115851,115879..115938, FT 115975..116043) FT /note="16 probable transmembrane helices predicted for FT BP0455 by TMHMM2.0 at aa 30-52, 59-76, 96-116, 123-142, FT 152-174, 195-217, 315-337, 387-409, 424-446, 453-475, FT 479-498, 505-527, 531-553, 566-588, 598-617 and 630-652" FT CDS 116309..118552 FT /transl_table=11 FT /gene="hemC" FT /locus_tag="BP0456" FT /product="putative heme receptor" FT /note="Similar to Haemophilus ducreyi TonB-dependent heme FT receptor A precursor TdhA TR:O87381 (EMBL:AF052977) (739 FT aa) fasta scores: E(): 1.4e-134, 48.743% id in 716 aa, and FT to Haemophilus influenzae heme/hemopexin utilization FT protein C precursor HxuC or Hi0113 SW:HXC1_HAEIN (P44523) FT (744 aa) fasta scores: E(): 2.8e-139, 48.299% id in 735 aa" FT /db_xref="GOA:Q7VSG8" FT /db_xref="InterPro:IPR011276" FT /db_xref="UniProtKB/TrEMBL:Q7VSG8" FT /protein_id="CAE44786.1" FT /translation="MSSPRPPAPWRAPLALAGLSLGCAAGAYGAPAPAQTVVTLPAQEV FT IGDSVAAARSVLRLPEIERAQADNFASLVDQLPGISMAGSPRPGGQSLNIWGMGDTEDV FT KIVLDGAPKGFEKYRQGSVFIEPELIRRIEVDKGPHNLVDGNGGFGGTVKIDTKDAADL FT LPPGARFGALAKYGRHSNDGQDIYSVALYGRTRADGADGLLYANRRDGGDLRRPDGTRF FT AYSRNNQRSLLAKVNLYPDDAQTITLSAMRSNAAGWQPFAAKRDDLPAPSQADIDRYGL FT TEAWRRKLVHRDQLDQNYSAKWNIAPSAHPWVNLTLAYARSDTRQRDRRSSRASQSAFL FT GTLGNKSWVDYRDDRFDLSNESHVALGTAEHVLLAGLRWHRHRRDTLMYYPPGRGEPDY FT NHGYFQPHYMPSGTQTVRSLYLQDAVTVGGLTVTPGVRYDHVANTGRPNDAPRYNNPAP FT VAGHDYRRVSYAGWTPHLGVVWKAARGVALFADAGRTWRAPVIDEQYEVQYAKSNVSGS FT SRALRPERIVGLRAGAVLDYNDIATRGDSVQIRTTLFRNRGKHEIFQRRGVACRGQAEG FT GAASDCPKPLSNYRNLPGYTIEGLELETYYDSPAMFASLSLSAMRGHRDASPRDPWGPR FT TWIAEIPPVSARAMLGVKLPRLDMVLGWRGEFVRRQDRSPTDGDPLAGYWALPKTAGYA FT LHGLFASWQPRHVKGLDVRLAADNLFNRPYHPYLGEAVSGTGRNIKLSIAQRF" FT misc_feature 116309..116395 FT /note="Signal peptide predicted for BP0456 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.901 between residues 29 and 30" FT misc_feature 116345..116377 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 116450..116497 FT /note="ScanRegExp hit to PS00589, PTS HPR component serine FT phosphorylation site signature." FT misc_feature 118214..118549 FT /note="HMMPfam hit to PF00593, TonB dependent receptor FT C-terminal region" FT misc_feature 118409..118474 FT /note="ScanRegExp hit to PS00392, DDC / GAD / HDC / TyrDC FT pyridoxal-phosphate attachment site." FT misc_feature 118496..118549 FT /note="ScanRegExp hit to PS01156, TonB-dependent receptor FT proteins signature 2." FT CDS 118831..119289 FT /transl_table=11 FT /locus_tag="BP0457" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli protein Smg or B3284 FT SW:SMG_ECOLI (P30853) (157 aa) fasta scores: E(): 3.5e-12, FT 40.506% id in 158 aa, and to Vibrio cholerae Smg protein FT Vc0049 TR:Q9KVU0 (EMBL:AE004096) (158 aa) fasta scores: FT E(): 4.1e-12, 39.490% id in 157 aa" FT /db_xref="InterPro:IPR007456" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSG7" FT /protein_id="CAE44787.1" FT /translation="MFDILVYLFENYYTPQACPAADVLAKRLAAAGFEHEDIDDALGWL FT YGLAETTERCVELAHAPATGIRIYTDAEYQQLGTESIGFITFLESAGVLPAPLREIVID FT RALASPETPISLSKIKIIALMVLWSQEAEIDNLVLEELLDDEGSRRLH" FT CDS join(119306..119734,119727..120230) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0458" FT /product="probable aminoacyl-tRNA synthetase (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 143. The sequence has been checked FT and believed to be correct. Similar to Pseudomonas FT aeruginosa probable aminoacyl-transfer RNA synthetase FT Pa4724 or GltX TR:Q9HV75 (EMBL:AE004886) (293 aa) fasta FT scores: E(): 2e-41, 47.138% id in 297 aa, and to Vibrio FT cholerae glutamyl-tRNA synthetase-related protein Vc0595 FT TR:Q9KUC7 (EMBL:AE004144) (304 aa) fasta scores: E(): FT 7.6e-40, 44.966% id in 298 aa" FT /db_xref="PSEUDO:CAE44788.1" FT misc_feature 119372..119659 FT /note="HMMPfam hit to PF00749, tRNA synthetases class I (E FT and Q)" FT variation 119735 FT /note="35 bp deletion in pertussis relative to FT parapertussis and bronchiseptica" FT misc_feature 119823..120050 FT /note="HMMPfam hit to PF00749, tRNA synthetases class I (E FT and Q)" FT CDS complement(120217..122838) FT /transl_table=11 FT /locus_tag="BP0459" FT /product="putative membrane protein" FT /note="Similar to Pasteurella multocida hypothetical FT protein Pm0986 TR:Q9CM56 (EMBL:AE006137) (824 aa) fasta FT scores: E(): 4e-10, 26.310% id in 897 aa" FT /db_xref="InterPro:IPR018677" FT /db_xref="UniProtKB/TrEMBL:Q7VSG6" FT /protein_id="CAE44789.1" FT /translation="MQVDTHQQAGSELYAWRQFLGRATLWLGVVLLGSAVVCWVAANWP FT AMTKIQRFAGAQGLLALSAVIAAWVAWRLREATGVRRHGVGALLVLAGLFLGALLALLG FT QTYQTGADTWELFAWWALLLLPWALAGASQALWLLWALILNVAVALWLGERLLSWWWSL FT SGAGFPALVLAALNLAMLACWEWVAHHRHVSTRVGPRVLALLAQGVLVAALLFDFGALA FT DLASATGIAWIATTLGMGFYYQQVRRDLVILALLAAAMICVSLRVVGAWLLELEPGVWA FT ALPLAGLLMAEAVWAVRWLRRLGEQSTRAAVDAEPAGASAGNGLDPAEAGAPVLELAPE FT DARGAAETPWYVHGLLGLSAWLATWLLLLFVAASGIVASKEGALVAGLGLCIVAVAVLR FT TDSGPFWRQCATAMGFAGQILVMVGLWDSASFASACFFILALGAVVYALTPDLLLRFLS FT GWMIALAGAGLIWRGLTPGMGDKQLLGLLLEFDALRAAFVWLPVAVVGAWGAAVAFSLG FT HRWSRIRPQQLDPLGWALALAAQSMVWLAGGVTAMQLRALWALHPSTAVLTVAGVLLPV FT AVALSVLWPRRRQLTAGMLWGVPLALLVLALFWLPSPGVAFALAWLLLGFGLHKPRLTM FT LGVISLLAYLMIYYYQLQIPLLDKALWLAGGALLLFLGRLLVWLVPQWMRTAAPATRAP FT MGPPSRSLRWRVALVLAGLAVTLAVVNGNIWQREALLAKGRVAILELAPVDPRSLMQGD FT YMALRFAAGEDIERWRNDRPADGQDAAAFAHIDGYVVLAPDERGVARPVRIQEQAAPRD FT GNEIVLRYRLRASGVRLVTNAYFFPEGEQQRYQRARYGEMRVDDRGTGLLVRMLGEDLN FT PL" FT misc_feature complement(join(120664..120729,120790..120855, FT 120883..120939,120985..121050,121087..121152, FT 121183..121248,121288..121353,121414..121470, FT 121492..121548,121561..121626,121642..121692, FT 121723..121788,121942..122007,122023..122088, FT 122110..122166,122179..122235,122275..122340, FT 122380..122430,122446..122490,122521..122586, FT 122623..122679,122710..122775)) FT /note="22 probable transmembrane helices predicted for FT BP0459 by TMHMM2.0 at aa 21-43, 53-72, 84-106, 116-131, FT 136-153, 166-188, 201-220, 224-243, 250-272, 277-299, FT 350-372, 382-399, 404-426, 430-449, 456-475, 495-517, FT 530-552, 562-584, 596-618, 633-652, 661-683 and 703-725" FT CDS 122902..125529 FT /transl_table=11 FT /gene="topB" FT /locus_tag="BP0460" FT /product="DNA topoisomerase iii" FT /EC_number="5.99.1.2" FT /note="Similar to Escherichia coli DNA topoisomerase III FT TopB or B1763 SW:TOP3_ECOLI (P14294) (653 aa) fasta scores: FT E(): 5.8e-37, 33.866% id in 626 aa, and to Haemophilus FT influenzae DNA topoisomerase III TopB or Hi0444 FT SW:TOP3_HAEIN (P43704) (651 aa) fasta scores: E(): 6.3e-51, FT 33.703% id in 632 aa" FT /db_xref="GOA:Q7VSG5" FT /db_xref="HSSP:1ECL" FT /db_xref="InterPro:IPR006154" FT /db_xref="UniProtKB/TrEMBL:Q7VSG5" FT /protein_id="CAE44790.1" FT /translation="MNKTLIIAEKPSVALDISRALGGFAREGDYFESDRYVLASSIGHL FT LSLVAPNDPVKGKWSFTHLPVIPPAFELGPTDKKSAERLKLLVRLAKRKDVDAIINACD FT AGREGELIFRYIVQFAGVKKPIQRLWLQSMTQQAIRDAFANLRDDEQLKPLEAAARSRA FT EADWLVGINGTRAMTAFNSKDGGFFKTPVGRVQTPTLAIVNERENRIRSFVSRDYWEVH FT ATFVAAAGLYEGRWIDPAFRKDERDPEKRESRLWSLAAAQSVVAACRAQSGSVTEESKP FT STQMSPALYDLTSLQREANGRFGFSAKTTLALAQTLYERHKALTYPRTDSRYLPEDYIN FT TVRQTMQVLAQGDSNAVGALSRHADTVLAQNWVKPNRRIFDNKKVSDHFAIIPTLQVPR FT DLSEAEGKLYDLVLKRFLAVFFPAAEYRVTTRLTEVQGHRFKTEGKVLVTPGWLAVYGK FT EAQGEDANLVPVADGETVRAEDVEAVGLATKPPARYNEATLLSAMEGAGKLVDDEELRE FT AMSERGLGTPATRAAIIEGLLNEAYLRRDGRDLVPTAKARQLMALLSGLDVSELTSPEL FT TGEWEHKLKQIEQGALDRAAFMREIAQMTQVIVKRAKEYERDTVPGDYATLQTPCPKCG FT GVVKENYRRFACTQCDFSIGKHPGGRTFELPEVEELLAKREIGPLQGCISKMGRPFAAI FT LRISGEYKLEFDFGQNDEEDNEAVDFSGHTPVGACPKCSARVFEHGMSYVCEKLVGLQK FT SCDFRSGKVILQQEISREQMEKLLTAGRTDLLDGFVSSRTNRKFKAFLVRQPDGKVGFE FT FEPRGDKPGRPGAAAKKAAGKTATKTAAKAPAKTAAKKAVKKAAPKKAATKTAAKKAAK FT KSAA" FT misc_feature 122908..123297 FT /note="HMMPfam hit to PF01751, Toprim domain" FT misc_feature 123373..124599 FT /note="HMMPfam hit to PF01131, DNA topoisomerase" FT misc_feature 123844..123891 FT /note="ScanRegExp hit to PS00396, Prokaryotic DNA FT topoisomerase I active site." FT misc_feature 125380..125403 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 125681..126745 FT /transl_table=11 FT /locus_tag="BP0461" FT /product="putative exported protein" FT /note="Similar to Rhizobium loti ABC transporter, FT substrate-binding protein Mlr7949 TR:Q984L7 (EMBL:AP003013) FT (337 aa) fasta scores: E(): 2.5e-08, 25.085% id in 295 aa, FT and to Agrobacterium tumefaciens Agr_l_1197p TR:AAK89177 FT (EMBL:AE008258) (333 aa) fasta scores: E(): 2.6e-07, FT 25.267% id in 281 aa" FT /db_xref="InterPro:IPR006311" FT /db_xref="UniProtKB/TrEMBL:Q7VSG4" FT /protein_id="CAE44791.1" FT /translation="MTALRSPRGATRRRFLAGSGALMAVGLAGSRLSWAQPALGRVAYG FT QGSIDPFFAAGYVALKQGYFAADELEVEYLNSQSGPRTNQLLAAGQIVFGATAATAAPA FT LTLAGKPAALVFGFDRKLTYANIIVRRADYESGKIRTLADLAGKRVGATQPQSSTWLMA FT LYLMQKAGVADKVDIRPLGDLATMLGALKTGSVSASMATLSMMEQAVQEGWGMPIFDAT FT TEASWQEFMGGDVPGIAALTLQDTIQKRPEVVQAFVGALVKAQDFISANSAAAVTDLIY FT DDYLNAYARPAIEKTIGLYQQTVFLRDNIITEDAYARMTAIMGDGRQFSNEELKKVPYS FT ACVDMRFVRKARGL" FT CDS 126742..127515 FT /transl_table=11 FT /locus_tag="BP0462" FT /product="ABC-transporter, ATP-binding component" FT /note="Similar to Streptomyces coelicolor putative FT ABC-transport protein, ATP-binding component Sc8g12.21 FT TR:Q9KYY4 (EMBL:AL355753) (270 aa) fasta scores: E(): FT 3.4e-32, 45.312% id in 256 aa, and to Agrobacterium FT tumefaciens Agr_l_1200p agr_l_1200 TR:AAK89178 FT (EMBL:AE008258) (273 aa) fasta scores: E(): 2.9e-34, FT 48.261% id in 230 aa" FT /db_xref="GOA:Q7VSG3" FT /db_xref="HSSP:1G29" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7VSG3" FT /protein_id="CAE44792.1" FT /translation="MMIELEHVGKVYQARNATVHAVGEVSLRIDDGEFVAIVGPSGCGK FT STLLNMIAGFLPPTTGTVRVAGAPVAGQVPPALGYIFQKDTLLPWFNVRKNVALGLRFQ FT GVDSARIARRVDELLELGHLSGFANAYPHQLSGGMRRRVALLMSLAVEPRILLLDEPFG FT ALDTHTKTHLHRELGEIWRKLGQTIVMVTHDLDEAITLADRVVVLSGPPSRVLLDERIA FT IAHPRDVFTLRDTPQFTAHMRSLWAVLGQQFRNAA" FT misc_feature 126835..127374 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 126856..126879 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 127144..127188 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature." FT CDS 127524..128357 FT /transl_table=11 FT /locus_tag="BP0463" FT /product="ABC transporter, permease component" FT /note="Similar to Escherichia coli taurine transport system FT permease protein TauC or SsiC or B0367 SW:TAUC_ECOLI FT (Q47539) (275 aa) fasta scores: E(): 7.1e-16, 28.195% id in FT 266 aa, and to Rhizobium loti ABC transporter, permease FT Mlr7951 TR:Q984L5 (EMBL:AP003013) (292 aa) fasta scores: FT E(): 8.7e-36, 37.681% id in 276 aa" FT /db_xref="GOA:Q7VSG2" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7VSG2" FT /protein_id="CAE44793.1" FT /translation="MSSDSPLPDALRDGVRRRLRVTAWQLLILALILGAWEGLTRVPWF FT VQNTIFDPFFISQPSRVAQRLWQWMQPGPQSVWPHLWLTLQATLLGLAVGVGSGFVVGL FT ALSRSRMLADVFNPFIVAFNSMPRIAFVPLITMFFELGMASKVVTSWFVVFFLVFFNTY FT KGGRSVERELVDFCRTLGGSPRQILWRVRIPTAAAWTFAALPNAISFALIGVVLAEFVG FT STTGMGYLMITALATLNATDMFAAVTLLSVVGIVLVYCVTWLERRLLHWAPEFRD" FT misc_feature join(127584..127643,127761..127829,127866..127934, FT 127944..128012,128118..128186,128244..128312) FT /note="6 probable transmembrane helices predicted for FT BP0463 by TMHMM2.0 at aa 21-40, 80-102, 115-137, 141-163, FT 199-221 and 241-263" FT misc_feature 128016..128249 FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT CDS 128370..129149 FT /transl_table=11 FT /gene="idnO" FT /locus_tag="BP0464" FT /product="gluconate 5-dehydrogenase" FT /EC_number="1.1.1.69" FT /note="Similar to Escherichia coli gluconate FT 5-dehydrogenase IdnO or B4266 SW:IDNO_ECOLI (P39345) (254 FT aa) fasta scores: E(): 1.8e-29, 40.000% id in 250 aa, and FT to Agrobacterium tumefaciens Agr_c_4386p TR:AAK88153 FT (EMBL:AE008155) (256 aa) fasta scores: E(): 1e-45, 54.545% FT id in 253 aa" FT /db_xref="GOA:Q7VSG1" FT /db_xref="HSSP:1FJH" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VSG1" FT /protein_id="CAE44794.1" FT /translation="MISLPYLQRFALSGQVALVTGSARGLGLRIAQALAGSGAHVLING FT RDAHAVEAAVSDLRQQGLRASAQPFDVSDEQAMEQAFARIDAEHGRLDILVNNVGARNR FT KPLAETSPAEIRAMMDTNLIAGILLARLAAQRMMRQRYGRLIAITSVAGELARANDAVY FT PAAKQGLTGMMRALAVEFGGHGITSNAIAPGAFATETNAAIANDPQAGAAMAARNPTGR FT WGDPEEIAGAAVFLASPAASYVNGHVLVVDGGLSVQF" FT misc_feature 128412..128966 FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT misc_feature 128817..128903 FT /note="ScanRegExp hit to PS00061, Short-chain FT dehydrogenases/reductases family signature." FT misc_feature 129030..129122 FT /note="HMMPfam hit to PF00678," FT CDS 129223..130656 FT /transl_table=11 FT /locus_tag="BP0465" FT /product="probable aldehyde dehydrogenase" FT /note="Similar to Ustilago maydis indole-3-acetaldehyde FT dehydrogenase Iad1 TR:Q92460 (EMBL:U74468) (497 aa) fasta FT scores: E(): 1.2e-68, 42.827% id in 474 aa, and to Bacillus FT halodurans NADP-dependent aldehyde dehydrogenase DhaS or FT Bh0539 TR:Q9KFE2 (EMBL:AP001508) (498 aa) fasta scores: FT E(): 1.3e-69, 41.788% id in 481 aa" FT /db_xref="GOA:Q7VSG0" FT /db_xref="HSSP:1BI9" FT /db_xref="InterPro:IPR016162" FT /db_xref="UniProtKB/TrEMBL:Q7VSG0" FT /protein_id="CAE44795.1" FT /translation="MKQHFIDNASVPGSSGERIPVIDPSTGQEFDSIARGNAADIDLAV FT QAARRAYEGAWGRLSAAERGRLMLALSLKVLEHRDELTALESRDCGKPLKQARADVIAI FT ARYFEYYGGAADKLHGETIPYQQGYTVLTLREPHGVTGHVVPWNYPLQIFGRSVGAALA FT AGNACVVKPAEDACLSLLRVAELAAETGFPAGALNIVTGYGHEAGDALTRHPGIDHISF FT TGSPRVGVLVTQTAAERHVPVTLELGGKSPQIVFADADLDALVPVAVNAIVQNAGQTCS FT AGSRLLVERGAYERVLERLGAAFAALRAGPAQSDLDCGPLIRKTQQERVRGFLDLARGD FT GIATVAQGRIVPEAPAEGYYQAPTLLRDVPVDHPLAQEEVFGPVLAAIPFDDEADAVRI FT ANATEYGLAASVWTRDGGRQLRIARKVRSGQVFINNYGAGGGIELPFGGVKASGHGREK FT GFEALYGFTVLKTISIKHD" FT misc_feature 129247..130650 FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family" FT misc_feature 129955..129978 FT /note="ScanRegExp hit to PS00687, Aldehyde dehydrogenases FT glutamic acid active site. Confirmed by InterPro eMOTIF FT pattern match." FT misc_feature 130039..130074 FT /note="ScanRegExp hit to PS00070, Aldehyde dehydrogenases FT cysteine active site." FT CDS 130684..131442 FT /transl_table=11 FT /locus_tag="BP0466" FT /product="alcohol dehydrogenase" FT /note="Similar to Escherichia coli 7-alpha-hydroxysteroid FT dehydrogenase HdhA or HsdH or B1619 or Z2624 or Ecs2327 FT SW:HDHA_ECOLI (P25529) (255 aa) fasta scores: E(): 7.5e-24, FT 37.751% id in 249 aa, and to Pseudomonas paucimobilis FT 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase LinX FT SW:LINX_PSEPA (P50198) (250 aa) fasta scores: E(): 9.2e-27, FT 40.873% id in 252 aa" FT /db_xref="GOA:Q7VSF9" FT /db_xref="HSSP:1Q7B" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VSF9" FT /protein_id="CAE44796.1" FT /translation="MRLNGKTAIVTGAGSGFGEGIAAAFAREGAKVAVADINEAGGQRV FT AAAINAAGGQAVFVRADVSDNAAVANLLAATLKAFDGLDIVVNNAGTTHRNRPMLEVEE FT DEFDRIYAINVKSIYLTAKHMVPYFRAHGGGSFINIASTAAIRPRPGLTWYNGSKGAVV FT TTSKSMAAELGPDNIRVNCVNPVIGATGLLADFMGVPDTPENRKRFLATIPLGRFSTPQ FT DIANACLYLASDETAFITGACLEVDGGRCV" FT misc_feature 130684..130761 FT /note="Signal peptide predicted for BP0466 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.899) with cleavage site FT probability 0.812 between residues 26 and 27" FT misc_feature 130699..131256 FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT misc_feature 131155..131202 FT /note="ScanRegExp hit to PS00038, Myc-type, FT 'helix-loop-helix' dimerization domain signature." FT misc_feature 131329..131421 FT /note="HMMPfam hit to PF00678," FT CDS complement(131498..133348) FT /transl_table=11 FT /locus_tag="BP0467" FT /product="acetolactate synthase large subunit" FT /EC_number="2.2.1.6" FT /note="Similar to Saccharomyces cerevisiae acetolactate FT synthase, mitochondrial precursor Ilv2 or Smr1 or Ymr108w FT or Ym9718.07 SW:ILVB_YEAST (P07342) (687 aa) fasta scores: FT E(): 1.7e-87, 42.710% id in 583 aa, and to Rhizobium FT meliloti probable acetolactate synthase isozyme III large FT subunit protein TR:CAC46693 (EMBL:AL591789) (592 aa) fasta FT scores: E(): 1.3e-81, 52.860% id in 577 aa. Also similar to FT BP0789 (50.000% identity in 580 aa overlap)" FT /db_xref="GOA:Q7VSF8" FT /db_xref="HSSP:1JSC" FT /db_xref="InterPro:IPR012000" FT /db_xref="UniProtKB/TrEMBL:Q7VSF8" FT /protein_id="CAE44797.1" FT /translation="MVSMNDRLHTSTLSALQQVEHAAAVNGAKILLHTLIERGVDTVFG FT YPGGAVLPLYDALYAEPRLRHVLVRHEQAAVHAAEGYARTTGRPGVVFVTSGPGMANTT FT SGLLDAMCDSVPVLCISGQVSTAAIGTDAFQECDAIGISRSVTKWNTQIRAVQDVAEVV FT GRAFDLTRQGRPGPVLVDFPKDIQLASPADAPQGEADPARRQLAALRARRQGGKAATRV FT PQGAVRRAAALLAQARRPVFYGGGGLVNSGPQACAAFTELVRQSGAPCTLTLMGLGAFP FT ASDPQFVGMLGMHGTLEANLAMHNADLVVCIGVRFDDRITGKLSEFCPHARKIHIDIDP FT ASINKVVRVDVALVGDCLPLVQALRDELAASPLPAQRLGPWWQRIDTWRARDCLAYTPA FT ADEILPQHLMHRLGAALDGRDAIVSTDVGQHQMWAAQYLRFDRPNRWLTSGGAGTMGYG FT VPAAIGAQIAHPGKTVVCVSGDASVLMNIQELSTAMQHDVPVKIVLCNNGYMGMVRQWQ FT ELIHGGRYSHSYNASLPDFVALARAFGWGAARVERPQDLDAALAACLEHPGPYFLDVAV FT AEQENCFPMMPAGHGHHRMMLADGQWYEEPPLPESPSPQA" FT misc_feature complement(131627..133246) FT /note="HMMPfam hit to PF00205, Thiamine pyrophosphate FT enzyme, central domain" FT misc_feature complement(131903..131962) FT /note="ScanRegExp hit to PS00187, Thiamine pyrophosphate FT enzymes signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 133442..133918 FT /transl_table=11 FT /locus_tag="BP0468" FT /product="AsnC-family transcriptional regulator" FT /note="Similar to Pseudomonas putida bkd operon FT transcriptional regulator BkdR SW:BKDR_PSEPU (P42179) (161 FT aa) fasta scores: E(): 1.3e-19, 39.073% id in 151 aa, and FT to Pseudomonas aeruginosa probable transcriptional FT regulator Pa4508 TR:Q9HVR3 (EMBL:AE004864) (157 aa) fasta FT scores: E(): 1.4e-20, 42.105% id in 152 aa. Also similar to FT BP2981 (41.333% identity in 150 aa overlap), and to BP1122 FT (42.667% identity in 150 aa overlap)" FT /db_xref="GOA:Q7VSF7" FT /db_xref="HSSP:1I1G" FT /db_xref="InterPro:IPR019888" FT /db_xref="UniProtKB/TrEMBL:Q7VSF7" FT /protein_id="CAE44798.1" FT /translation="MKLDKFDLAILKALQDNARASLNDIGAAVGLSSTPCWNRIKRMEG FT AGIIRGYTVDIDPASIGFTDTVIVHVTLESHSEETLYEFGRALAQIPEVLEAFLVSGDY FT DYYIRIAVRDTRDYERLLHERLYRIPGIRHSKSCFVLRSLKETRLPLTPPPEQA" FT misc_feature 133568..133831 FT /note="HMMPfam hit to PF01037, AsnC family" FT CDS complement(133935..134891) FT /transl_table=11 FT /locus_tag="BP0469" FT /product="putative membrane protein" FT /note="Similar to Escherichia coli O157:H7 hypothetical FT 36.8 kDa protein Ecs2127 TR:BAB35550 (EMBL:AP002557) (321 FT aa) fasta scores: E(): 2.3e-34, 38.170% id in 317 aa, and FT to Rhizobium loti Mll4386 protein TR:Q98E66 (EMBL:AP003004) FT (309 aa) fasta scores: E(): 8.8e-45, 45.724% id in 304 aa" FT /db_xref="InterPro:IPR007913" FT /db_xref="UniProtKB/TrEMBL:Q7VSF6" FT /protein_id="CAE44799.1" FT /translation="MWLPKFRCSQIVMIVRPRPTAWGLLFILRGSVIPHIAAKVAVIVA FT LSCVVAWLHARQWFAPGHLNAVPFSLFGLALSVFLGFRNNVCYDRWWEARKQWAELSAQ FT CRSLARETAAVLSGAADAPRQARIVRRLIGFNHALVARLRGGDPLTAARPWLPDAESMA FT LAGHRNVPDAILRAVTGDLHEGGPQRRYGEVVYQGLQQRVLACAQVQAACERIKTTPTP FT FAYSLLLHRTAWLFCLLLPFGLVGTLGPLTPLAVAFVAYTFFGLDALGDELEEPFGLAE FT NDLPLAALARDLEIDLLEGLGAHPLPAPLLPRGYVLT" FT misc_feature complement(join(134124..134189,134652..134717, FT 134763..134828)) FT /note="3 probable transmembrane helices predicted for FT BP0469 by TMHMM2.0 at aa 21-43, 58-80 and 234-256" FT CDS 134953..135462 FT /transl_table=11 FT /locus_tag="BP0470" FT /product="conserved hypothetical protein" FT /note="Similar to Xylella fastidiosa hypothetical protein FT Xf1478 TR:Q9PDA1 (EMBL:AE003977) (139 aa) fasta scores: FT E(): 4.3e-20, 48.227% id in 141 aa, and to Homo sapiens FT similar to kiaa0304 gene product TR:AAH07353 FT (EMBL:BC007353) (175 aa) fasta scores: E(): 1.8e-14, FT 37.908% id in 153 aa" FT /db_xref="InterPro:IPR001214" FT /db_xref="UniProtKB/TrEMBL:Q7VSF5" FT /protein_id="CAE44800.1" FT /translation="MRPMTEIIKPWHSVRRSRLHGNGVFATRKIPAGTRIIEYGGKRIS FT AEEADRRHPTNPDDPFHTFFFSLSSGRVIDGGDEGNDARWINHSCDPNCEAQEGRHGKR FT VYIVALRDIARGEELFYDYGLVLDGRITRKLKEGYRCLCGTTPCRGTMLALPEKKKTKA FT RSAEKA" FT misc_feature 134959..135342 FT /note="HMMPfam hit to PF00856, SET domain" FT CDS 135836..136528 FT /transl_table=11 FT /gene="ribB" FT /gene_synonym="htrP" FT /locus_tag="BP0471" FT /product="3,4-dihydroxy-2-butanone 4-phosphate synthase" FT /note="Similar to Escherichia coli 3,4-dihydroxy-2-butanone FT 4-phosphate synthase RibB or HtrP or B3041 or Z4399 or FT Ecs3929 SW:RIBB_ECOLI (P24199) (217 aa) fasta scores: E(): FT 1.3e-39, 57.843% id in 204 aa, and to Vibrio cholerae FT 3,4-dihydroxy-2-butanone 4-phosphate synthase Vca1060 FT TR:Q9KKP2 (EMBL:AE004431) (218 aa) fasta scores: E(): FT 3.9e-38, 57.214% id in 201 aa" FT /db_xref="GOA:Q7VSF4" FT /db_xref="InterPro:IPR000422" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSF4" FT /protein_id="CAE44801.1" FT /translation="MSNVVPTPVFPLFAQPFATRLERALQHLRIGRPVILMDDFDRENE FT ADLIVAADKLTVPVMAQLIRDGSGIVCLCLPGETLDRLELPPMVDSNRSRYSTAFTVSI FT EAREGVTTGVSAVDRVTTIRAAIAPGARSGDVVSPGHVFPLRAQPGGVLTRRGHTEGSV FT DLAALAGLRPAGVLCELMNADGTMMRGASLERYAAKEGLVALAIDELAAHLQARGATGA FT PAELAVAA" FT misc_feature 135896..136483 FT /note="HMMPfam hit to PF00926, 3,4-dihydroxy-2-butanone FT 4-phosphate synthase" FT misc_feature 136175..136204 FT /note="ScanRegExp hit to PS00339, Aminoacyl-transfer RNA FT synthetases class-II signature 2." FT CDS complement(136542..136739) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0472" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Pseudomonas aeruginosa FT hypothetical protein Pa0144 TR:Q9I6Y8 (EMBL:AE004452) (208 FT aa) fasta scores: E(): 0.00032, 50.000% id in 54 aa" FT repeat_region 136735..136766 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 136735..137787 FT CDS 136837..137787 FT /transl_table=11 FT /locus_tag="BP0473" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE44803.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 137095..137160 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 137218..137751 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(137756..137787) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 137904..138971 FT /transl_table=11 FT /locus_tag="BP0474" FT /product="choloylglycine hydrolase" FT /EC_number="3.5.1.24" FT /note="Similar to Clostridium perfringens choloylglycine FT hydrolase SW:CBH_CLOPE (P54965) (329 aa) fasta scores: E(): FT 1.7e-06, 25.959% id in 339 aa, and to Rhizobium loti FT Mlr8141 protein TR:Q983W5 (EMBL:AP003013) (350 aa) fasta FT scores: E(): 7.4e-110, 80.059% id in 341 aa" FT /db_xref="GOA:Q7VSF3" FT /db_xref="InterPro:IPR003199" FT /db_xref="UniProtKB/TrEMBL:Q7VSF3" FT /protein_id="CAE44804.1" FT /translation="MIFRRSRPGTIGAVTLLCASLLAMPASSACTRFVYHGANDEVITA FT RSMDWKVDVGTNLWAFPRGMQRSGQAGPNSIQWTSKHGSVIASGYDISTTDGMNEAGLV FT ANVLWLAESSYPEYDGKTPGLTLAAWAQYVLDNFASVREAVDTLASEPFTVVTDNVPGE FT QRPATLHLSLSDASGDSAIIEYIDGKQVIHHNRAYQVMTNSPTFDKQLALNEYWKQIGG FT TVMLPGTNRASDRYARAYFYVNAIPKSEDPVEAIASVFSVIRNVSVPYGITTPDQPNIS FT STRWRTVADHKRKRYFFESALTPNIFWIDLGALDFSAESGKVMKLDLGPDQAHIYSGQA FT NAHFEQAAPFKFLGL" FT misc_feature 137961..137993 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT misc_feature 137991..138824 FT /note="HMMPfam hit to PF02275, Choloylglycine hydrolase" FT CDS complement(139047..142175) FT /transl_table=11 FT /gene="rne" FT /gene_synonym="ams" FT /gene_synonym="hmp1" FT /locus_tag="BP0475" FT /product="ribonuclease E" FT /EC_number="3.1.4.-" FT /note="Similar to Escherichia coli ribonuclease E Rne or FT Ams or Hmp1 or B1084 SW:RNE_ECOLI (P21513) (1061 aa) fasta FT scores: E(): 1.6e-93, 44.328% id in 1049 aa, and to FT Neisseria meningitidis ribonuclease E Nmb0196 TR:Q9K1F8 FT (EMBL:AE002377) (919 aa) fasta scores: E(): 5.8e-109, FT 50.558% id in 985 aa" FT /db_xref="GOA:Q7VSF2" FT /db_xref="InterPro:IPR019307" FT /db_xref="UniProtKB/TrEMBL:Q7VSF2" FT /protein_id="CAE44805.1" FT /translation="MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGV FT ITRIEPGLEACFVNYGEDRHGFLPFKEVARSFFKEGVDVRTARIQDALREGQELIVQVE FT KEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMEQLDVPQGM FT SIIARTAGIGRNVDELQWDLSYLLQLWTAIDGAARDNAAPILIYLESSLVIRAIRDYFS FT PEIGEILIDTDEIADQATAFMSVVIPDNVQRVKRYRDDIPLFSRFQIEHQIETAYSRTV FT QLPSGGAVVIDHTEALVAVDVNSARSTRGADIEETALRTNLEAAEEVARQLRLRDLGGL FT IVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSH FT ITCPRCNGTGVIRDAESSALHVLRLLQEEAMKENTAAVHAQVPVDVATFLLNEKRADIT FT KMEARLKVNLVLIPNKHLETPHHHIERLRHDDPRLEETKTSFELAEAPATDLTWQPREH FT EIKARPEALVKGITPAQPAPVSTPAPAKAPAAAAAAQGGLGGWFKRLTSWLGGSAEPAK FT TETKSEDEKRGANRARRAHDGQNRRGERHGSDRNRHRRNEPRGEHAESGDARHHVRGGR FT RQEERGERGERGQKEARTEREQTQQQQAAGQPRQERPSTAETGEEGGRGRGRGRRGRGR FT GRREEGQTDTPMTEQENMVAALAETVATALPEKRQAAPAPAAAAAAALTVAEAASSNEQ FT APVTEDADGIDGIDANADAGAETGTDPERKRRRRRSRRGRRSQEDGSTVNAEGVEGADD FT EQADAPAGVADIETPAQPAEPETVAAPVAVSVAADEPAATIETAAAEPAAPQATEAPQA FT EPVVAAADTAPQAVQPVQAELTPVETPQAQAQPAEPAAAAPVETAPVETAPVETAPVET FT TPVEAPVKPAEQAAAPVEAEAPVAQPEKTPEPAAVRPAAAIVVPAQAAAPATGALHDVL FT DAAGLTWVETDPERHAQTQMRIAAAATPARLGRERKPVASVSNEPLVQVETRH" FT misc_feature complement(141822..142073) FT /note="HMMPfam hit to PF00575, S1 RNA binding domain" FT CDS 142698..143648 FT /transl_table=11 FT /gene="rluC" FT /locus_tag="BP0477" FT /product="ribosomal large subunit pseudouridine synthase C" FT /EC_number="4.2.1.70" FT /note="Similar to Escherichia coli ribosomal large subunit FT pseudouridine synthase C RluC or B1086 SW:RLUC_ECOLI FT (P23851) (319 aa) fasta scores: E(): 5.8e-52, 50.000% id in FT 316 aa, and to Pasteurella multocida RluC or Pm0992 FT TR:Q9CM51 (EMBL:AE006138) (326 aa) fasta scores: E(): FT 1e-53, 50.157% id in 319 aa" FT /db_xref="GOA:Q7VSF1" FT /db_xref="InterPro:IPR006225" FT /db_xref="UniProtKB/TrEMBL:Q7VSF1" FT /protein_id="CAE44806.1" FT /translation="MRKETSPGTTPPAVRMLAIGPEHDGQRIDNFLLRLCKGVPKSHIY FT KAIRGGEVRVNKGRISAEYRLVEGDVVRVPPLRLPDPGATRPVPGAEFPVVYEDDALLV FT IDKPAGVAVHGGSGVSFGVIEQLRAARPQARFLELVHRLDRETSGLLMLAKKRSALLAL FT HAMLREGKGDKHYLALVEGDWVNDRQHIRLALTKWTTQSGERRVRVDQAGQAAHTIVTL FT RKRFGGYSLVDAELRTGRTHQIRVHLASSGFPIVGDDKCGTDEIRAAFARRGFGRMFLH FT AHQLTLPHPLTGETLRLTADLPPACLKLLKQLETA" FT misc_feature 142998..143447 FT /note="HMMPfam hit to PF00849, RNA pseudouridylate FT synthase" FT misc_feature 143115..143159 FT /note="ScanRegExp hit to PS01129, Rlu family of FT pseudouridine synthase signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 143651..144322 FT /transl_table=11 FT /locus_tag="BP0478" FT /product="probable hydrolase" FT /note="Similar to Erwinia chrysanthemi indigoidine FT systhesis protein IdgB TR:Q9KHB5 (EMBL:AF265211) (230 aa) FT fasta scores: E(): 4.8e-18, 40.777% id in 206 aa, and to FT Pseudomonas aeruginosa probable hydrolase Pa2974 TR:Q9HZN0 FT (EMBL:AE004723) (230 aa) fasta scores: E(): 2.1e-26, FT 44.340% id in 212 aa" FT /db_xref="GOA:Q7VSF0" FT /db_xref="InterPro:IPR006402" FT /db_xref="UniProtKB/TrEMBL:Q7VSF0" FT /protein_id="CAE44807.1" FT /translation="MGYSLVVFDWDGTLMDSTHSIVAAIQGACRDLDLPVPSASSASWV FT IGLSLESALRRAVPELTQAMVPRFLERYRTHYLLRDSELRLFEGVRELLADLASQDVRL FT AVATGKSRVGLNRALAATGLGPLFDATRTADETFSKPHPAMLQELMHELGHEADAVVMV FT GDTSHDLQMAANAGVHGLGVAYGAHTLAELEACAPQAVVDSVAVLREWLLARSPGRIES FT V" FT misc_feature 143657..144208 FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase" FT CDS 144479..145438 FT /transl_table=11 FT /locus_tag="BP0479" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Smc01281 TR:CAC45962 (EMBL:AL591787) (313 aa) fasta FT scores: E(): 1.3e-65, 55.799% id in 319 aa, and to FT Agrobacterium tumefaciens Agr_c_3511p TR:AAK87679 FT (EMBL:AE008111) (346 aa) fasta scores: E(): 3.1e-67, FT 55.728% id in 323 aa" FT /db_xref="GOA:Q7VSE9" FT /db_xref="InterPro:IPR006311" FT /db_xref="UniProtKB/TrEMBL:Q7VSE9" FT /protein_id="CAE44808.1" FT /translation="MLIRKPSDIPSSQITPETVWQGRRDWIARAGLAAAALGLPGWAQR FT AAFAQDAALPGAPNSRYAVVDKPTSFKDVTTYNNYYEFGLDKGDPAAHAGRLRTWPWEI FT AIEGEVGKPGVYAIDDLLKLAPMEERIYRLRCVEGWSMVIPWVGYSLSTLLQRVEPTGN FT AKYVEFVTAVQRDTMPGVRSSVLDWPYVEALRLDEALHPLTMLVFGVYGKVLPNQNGAP FT VRLAVPWKYGFKSAKSLVAIRLVEKQPVSSWMNAAPQEYGFYANVNPDVPHPRWSQATE FT RRIGEDGLFSPKRKTLMFNGYAEQVASLYQGLDLRANY" FT CDS 145488..146108 FT /transl_table=11 FT /locus_tag="BP0480" FT /product="putative membrane protein" FT /note="Similar to Rhizobium meliloti hypothetical FT transmembrane protein Smc01282 TR:CAC45961 (EMBL:AL591787) FT (216 aa) fasta scores: E(): 1.1e-23, 41.429% id in 210 aa, FT and to Caulobacter crescentus hypothetical protein Cc2747 FT TR:Q9A4T3 (EMBL:AE005940) (253 aa) fasta scores: E(): FT 1.3e-23, 43.229% id in 192 aa" FT /db_xref="GOA:Q7VSE8" FT /db_xref="InterPro:IPR013130" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSE8" FT /protein_id="CAE44809.1" FT /translation="MPAAPLTARAIGRIKPLLFVAGLLPFARWFWLGANDGLSANPVEF FT LTRSSGTWTLVCLLVTLAITPLRRLTGQPALVRLRRMCGLFAFFYGSLHFLAWVWWDRG FT LDPVSMLQDVGERPFITVGFAAFVLMAALAATSTQWAMRKLGKRWQTLHRAVYAIGLLA FT ILHFWWHKAGKNDLQQPLLYGSVLALLLGWRVAAWWRRRGAAR" FT misc_feature join(145536..145589,145632..145700,145737..145790, FT 145833..145901,145938..145997,146025..146078) FT /note="6 probable transmembrane helices predicted for FT BP0480 by TMHMM2.0 at aa 31-48, 63-85, 98-115, 130-152, FT 165-184 and 194-211" FT CDS complement(146105..147055) FT /transl_table=11 FT /locus_tag="BP0481" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q84CT8" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q84CT8" FT /protein_id="CAE44810.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT repeat_region 146105..146136 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(146105..147157) FT misc_feature complement(146141..146674) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(146732..146797) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT CDS complement(147148..148578) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0482" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Agrobacterium tumefaciens FT Agr_l_695p TR:AAK88921 (EMBL:AE008234) (577 aa) fasta FT scores: E(): 2e-74, 48.261% id in 460 aa" FT /db_xref="PSEUDO:CAE44811.1" FT CDS complement(148612..149457) FT /transl_table=11 FT /locus_tag="BP0483" FT /product="AraC-family transcriptional regulator" FT /note="Similar to Rhizobium meliloti putative transcription FT regulator protein Smc03170 TR:CAC47480 (EMBL:AL591792) (279 FT aa) fasta scores: E(): 2.4e-11, 30.515% id in 272 aa, and FT to Bacillus halodurans Bh0401 protein TR:Q9KFS6 FT (EMBL:AP001508) (299 aa) fasta scores: E(): 4.2e-08, FT 27.119% id in 295 aa" FT /db_xref="GOA:Q7VSE7" FT /db_xref="InterPro:IPR018062" FT /db_xref="UniProtKB/TrEMBL:Q7VSE7" FT /protein_id="CAE44812.1" FT /translation="MKPKTRLYYAERLEPVLAWLAARPDADADLHRLAELACLSPYYFH FT RVYRALLGETVHATVQRMRLARASVALAQGKGSLRQVADRAGYASEAAFSRAFSAQYGL FT PPGRYRAKRSSPFNPEELRMYPLTMEDFPGLSLAILAHQGDYQEIGNTFDRLALLAAIQ FT DLVRDGMQPPPRYIGVYYDDPAQVARDALRSRAGVSLPPGTAAPAPFEPLDIPAMRCAV FT LEYTGPYSEIEAPYNWLFSQWLPASGQEPGDFPMFEEYLNDPKTTPAAQLKTRIYLPLA FT " FT misc_feature complement(149119..149379) FT /note="HMMPfam hit to PF00165, Bacterial regulatory FT helix-turn-helix proteins, araC family" FT misc_feature complement(149140..149274) FT /note="ScanRegExp hit to PS00041, Bacterial regulatory FT proteins, araC family signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS complement(149545..150708) FT /transl_table=11 FT /gene="lldD" FT /gene_synonym="lctD" FT /locus_tag="BP0484" FT /product="L-lactate dehydrogenase" FT /EC_number="1.1.2.3" FT /note="Similar to Escherichia coli L-lactate dehydrogenase FT LldD or LctD or B3605 SW:LLDD_ECOLI (P33232) (396 aa) fasta FT scores: E(): 3.5e-63, 46.825% id in 378 aa, and to FT Pseudomonas aeruginosa L-lactate dehydrogenase LldA or FT Pa2382 TR:Q9I197 (EMBL:AE004664) (383 aa) fasta scores: FT E(): 2.1e-118, 78.068% id in 383 aa" FT /db_xref="GOA:Q7VSE6" FT /db_xref="HSSP:1GOX" FT /db_xref="InterPro:IPR017934" FT /db_xref="UniProtKB/TrEMBL:Q7VSE6" FT /protein_id="CAE44813.1" FT /translation="MTQNLSTITCIEDLRVIAQKRVPRMFYDYADSGAWTESTYRANES FT DFQRIKLRQRVAVDMEGRSLRTTMAGSDAVMPVAIAPTGLTGMQHADGEILAARAAAEF FT GVPFTLSTMSICSIEDVAQGSGKPFWFQLYVMRDREFVGNLIDRAKAAGCSALVLTLDL FT QILGQRHKDIKNGLSAPPRPTLRNLIDLAFKPRWCLGMLGTRRRTFGNIVGHAKGVTDL FT SSLSSWTAEQFDPRLSWDDVEWIKRRWGGKLILKGILDAEDARLAAESGADALIVSNHG FT GRQLDGAVSSISALPAIAEAVGSRIEVWMDGGIRSGQDVLKAVALGARGTMIGRAFLYG FT LGAYGQAGVTRALGILYKEMDVTMALCGHKHINQIDRGILMPGTYPQ" FT misc_feature complement(149563..150657) FT /note="HMMPfam hit to PF01070, FMN-dependent dehydrogenase" FT misc_feature complement(149857..149877) FT /note="ScanRegExp hit to PS00557, FMN-dependent FT alpha-hydroxy acid dehydrogenases active site. Confirmed by FT InterPro eMOTIF pattern match." FT CDS join(150863..151108,151102..151113) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0485" FT /product="probable acylphosphatase (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 82. The sequence has been checked FT and believed to be correct. Similar to Pyrococcus abyssi FT acylphosphatase Pab7421 TR:Q9UY47 (EMBL:AJ248288) (91 aa) FT fasta scores: E(): 3e-10, 50.769% id in 65 aa, and to FT Aeropyrum pernix 104aa long hypothetical acylphosphatase FT Ape1591 TR:Q9YBK7 (EMBL:AP000062) (104 aa) fasta scores: FT E(): 1.5e-10, 53.521% id in 71 aa" FT /db_xref="PSEUDO:CAE44814.1" FT misc_feature order(150875..151108,151102..151103) FT /pseudo FT /note="This hit extended beyond the end of the feature by 0 FT aa and was clipped." FT /note="HMMPfam hit to PF00708, Acylphosphatase" FT misc_feature 150971..151021 FT /note="ScanRegExp hit to PS00151, Acylphosphatase signature FT 2. Confirmed by InterPro eMOTIF pattern match." FT variation 151106..151108 FT /note="~21 bp deletion in pertussis relative to FT parapertussis downstream of this codon." FT CDS complement(151127..152098) FT /transl_table=11 FT /locus_tag="BP0486" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Sma1927 TR:AAK65716 (EMBL:AE007292) (330 aa) fasta FT scores: E(): 4.4e-38, 36.013% id in 311 aa, and to FT Comamonas testosteroni Orf4 protein TR:Q9S155 FT (EMBL:AB024335) (325 aa) fasta scores: E(): 3e-34, 32.923% FT id in 325 aa" FT /db_xref="GOA:Q7VSE5" FT /db_xref="InterPro:IPR000834" FT /db_xref="UniProtKB/TrEMBL:Q7VSE5" FT /protein_id="CAE44815.1" FT /translation="MFKASLKALALCALAVLPMAAPAAQADWPAKPVTLVVPFPPGGST FT DVIGRYFGARLGELLGQSIVVENRPGANTGIGATAVARAPADSYTFMISGAPTYTTNSL FT LYANLNYDPIKSYEYVAIAASAPFVILTNPQTGIATVQDIVRKSASQPLSFGSFGTAST FT PHLAGEYLAQHGGAKLLHVPYRGSAPAMTDLIGNQIPLSIDTLVAALPQIRAGKVRAVA FT LTSSARSPLLPELPTVAESGVAPYDFQTWFGIVAPHGTPQAVVQRMAQALQTMLAEPGT FT QARMRELGFEPEYVDAAGFRARVEQEMARNAGVIKAAGIRIE" FT misc_feature complement(151547..151579) FT /note="ScanRegExp hit to PS00133, Zinc carboxypeptidases, FT zinc-binding region 2 signature." FT misc_feature complement(152021..152098) FT /note="Signal peptide predicted for BP0486 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.794 between residues 26 and 27" FT CDS complement(152137..153564) FT /transl_table=11 FT /locus_tag="BP0487" FT /product="probable amidase" FT /note="Similar to Pseudomonas aeruginosa probable amidase FT Pa4342 TR:Q9HW59 (EMBL:AE004850) (494 aa) fasta scores: FT E(): 3.5e-67, 45.436% id in 482 aa, and to Rhizobium loti FT amidotransferase, subunit A Mlr3187 TR:Q98GT2 FT (EMBL:AP003001) (472 aa) fasta scores: E(): 1.8e-58, FT 41.226% id in 473 aa" FT /db_xref="GOA:Q7VSE4" FT /db_xref="InterPro:IPR000120" FT /db_xref="UniProtKB/TrEMBL:Q7VSE4" FT /protein_id="CAE44816.1" FT /translation="MGWESICAMTALQLRAELAAGHLSAREILQAHLEAIEHWNPTVNA FT IVTLDVEGARRRAAAADQAQARGEPLGLLHGLPVAHKDSFLTAGMRTTHGSPVFADFVP FT ERSSLVVTRQQAAGAITLGKTNLPEFGAGSQTFNAVFGPTRNPYDPAMTAGGSSGGAAA FT ALACRMVLLADGTDMGGSLRNPASFCNVVGLRPSPGRVPMWPTAAPYNTLSVAGPMART FT VADAALMLAALAGPDARDPLTIDADPGLFLGALERDFAGTRVAYAPDWGGLPVDPAVGR FT VLQAQLPRWEELGCRVDQACPDFGQADSSFHALRGLAFAINQGETVRRHRDRVKDTVIW FT NTELGLNQSGAVLAQAERDRAQLFERMHDFMQQYEFLIGPVSQVPPFSADQEYIQRIGD FT VEMRNYIDWMRSGYYLSLTGHPAISVPCGFTETGLPIGIQIVGRYRDERGVLQLAHAFE FT QLTQCWRQAPALRAPAA" FT misc_feature complement(152212..153486) FT /note="HMMPfam hit to PF01425, Amidase" FT misc_feature complement(153007..153102) FT /note="ScanRegExp hit to PS00571, Amidases signature." FT misc_feature complement(153190..153213) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 153639..154475 FT /transl_table=11 FT /locus_tag="BP0488" FT /product="transcriptional regulator" FT /note="Similar to Pseudomonas putida pca regulon regulatory FT protein PcaR SW:PCAR_PSEPU (Q52154) (291 aa) fasta scores: FT E(): 1.8e-22, 31.250% id in 272 aa, and to Rhizobium FT meliloti putative transcriptional regulator, Iclr family FT protein Smb20586 TR:CAC49898 (EMBL:AL603647) (251 aa) fasta FT scores: E(): 1.8e-23, 33.471% id in 242 aa" FT /db_xref="GOA:Q7VSE3" FT /db_xref="InterPro:IPR005471" FT /db_xref="UniProtKB/TrEMBL:Q7VSE3" FT /protein_id="CAE44817.1" FT /translation="MHNAGKQVAAPLETPMPAATAALLAERADHPLYVASVEKGMRVLE FT AFDAARDSLSLTDIVQLTGMGKSAAQRFTHTWEALGYLAKDPQSRRYRLGPKVVELSYY FT FLRSDHLVSLAAPHLVALREHCGLAVNMSVLSGDDMIYLLRLPSRQLTLVEMLPGRRMP FT AWSNSAGRMLLSQRDDASVRDLLARAAPQLYTPRTQTDPQALLAEIRQAREDGYAITQD FT QVLLNQMGVATLLRDERRQPLAAISVTAAADEYPRARLVAEIVPQMLKAAYAICGA" FT misc_feature 153912..154472 FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator" FT CDS complement(154594..157047) FT /transl_table=11 FT /gene="gyrB" FT /gene_synonym="parA" FT /gene_synonym="nalC" FT /gene_synonym="acrB" FT /gene_synonym="pcbA" FT /gene_synonym="himB" FT /gene_synonym="hisU" FT /locus_tag="BP0489" FT /product="DNA gyrase subunit B" FT /EC_number="5.99.1.3" FT /note="Similar to Escherichia coli DNA gyrase subunit B FT GyrB or ParA or NalC or AcrB or PcbA or HimB or HisU or FT B3699 SW:GYRB_ECOLI (P06982) (803 aa) fasta scores: E(): FT 6e-179, 59.902% id in 813 aa, and to Salmonella typhimurium FT DNA gyrase subunit B GyrB SW:GYRB_SALTY (Q60008) (803 aa) FT fasta scores: E(): 2.4e-180, 60.394% id in 813 aa" FT /db_xref="GOA:Q7VSE2" FT /db_xref="HSSP:1AJ6" FT /db_xref="InterPro:IPR006171" FT /db_xref="UniProtKB/TrEMBL:Q7VSE2" FT /protein_id="CAE44818.1" FT /translation="MSDQQNTTPENTGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGL FT HHMVFEVVDNAIDEALAGHCDDIVVTIHTDNSISVTDNGRGIPTDIHKDDEFGRSAAEI FT VMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSEWLRLTIRRNGQVHQMEFRQGQRVA FT PLTATGPTDKRGTEVRFLADPAIFTNIEYHYEILSKRLRELSFLNNGVKVRLVDQRQGK FT EENFAFSGGVKGFVEYINRSKSVLHLNVFAVSAESSAGGVLVGVEVAMQWNDSYSESVL FT CFTNNIPQRDGGTHLTGLRAAMTRVLNKYIADNELAKKAKVETTGDDMREGLACVLSVK FT VPEPKFSSQTKDKLVSSEVRPAVEDAVARTLETWLLEHPNDAKALCGKIVEAARAREAA FT RKAREMTRRKSVLEGAGLPGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAIL FT PLRGKVLNVEKARFDRLIASEQIATLITALGTSIGPDFNIDKLRYHRLIIMTDADVDGA FT HIRTLLLTLLYRQMPELVARGHVYIAQPPLYKVKVGRDERYLKDDQEEAQFMLQLALKD FT AELIPSQGAAPIRGEALNELARQYVLADAVISRLSRVFDVAALSALAEGVEIDLEDAER FT TKASAQRLSDALHAASPANGVEVVAEYDDVAEKHRLAVRRMHHGNVRVSVLDADFVRGA FT DYAVLAKSAKTFLGLVGAGAIVARGEGDKRKEQFVSDFREAMQWLRGEAERGLSKQRYK FT GLGEMNPEQLWETTMDPKVRRLLRVQIEDAIAADEVFTTLMGDDVEPRRAFIETHALSA FT GNIDA" FT misc_feature complement(154630..154827) FT /note="HMMPfam hit to PF00986, DNA gyrase B subunit, FT carboxyl terminus" FT misc_feature complement(155410..155754) FT /note="HMMPfam hit to PF01751, Toprim domain" FT misc_feature complement(155716..155742) FT /note="ScanRegExp hit to PS00177, DNA topoisomerase II FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(155917..156477) FT /note="HMMPfam hit to PF00204, DNA topoisomerase II FT (N-terminal region)" FT misc_feature complement(156490..156930) FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, phytochrome-like ATPase" FT CDS complement(157142..158251) FT /transl_table=11 FT /gene="dnaN" FT /locus_tag="BP0490" FT /product="DNA polymerase iii, beta chain" FT /EC_number="2.7.7.7" FT /note="Similar to Escherichia coli DNA polymerase III, beta FT chain DnaN or B3701 or Z5192 or Ecs4636 SW:DP3B_ECOLI FT (P00583) (366 aa) fasta scores: E(): 1e-52, 42.424% id in FT 363 aa, and to Neisseria meningitidis DNA polymerase III, FT beta subunit Nmb1902 TR:Q9JXS8 (EMBL:AE002539) (367 aa) FT fasta scores: E(): 1.3e-62, 47.696% id in 369 aa" FT /db_xref="GOA:Q7VSE1" FT /db_xref="HSSP:1MMI" FT /db_xref="InterPro:IPR001001" FT /db_xref="UniProtKB/TrEMBL:Q7VSE1" FT /protein_id="CAE44819.1" FT /translation="MQLVQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAF FT IATDLEVQITTHADFGVGPENESTTVAARKLLDILKALPDTGEVKLGLASNKLSVQSAK FT SRFALQTLAASEFPTVAQPEQWDVSLSMPQRMLRHLFNMVHFAMAQQDIRYYLNGMLLV FT FEPGRVRAVATDGHRLAHCATEADGIAERHEVIVPRKTVLEMQRLLEDSDEPVALDVAP FT GQIRFRFGDVELVSKLVEGKFPDFTRVIPTNYTRQFSVSREALQGSLQRAAILTTDKFK FT GVRLQLAQHQMKISSSNAEQEEAQEEIDIDYSFEPLDVGFNVSYLLDVLSNIKAENVQW FT SVMPDANASALITLPDDEQFKYVVMPMRI" FT misc_feature complement(157157..158251) FT /note="HMMPfam hit to PF00712, DNA polymerase III beta FT subunit, N-terminal domain" FT misc_feature complement(157988..158005) FT /note="ScanRegExp hit to PS00343, Gram-positive cocci FT surface proteins 'anchoring' hexapeptide." FT CDS complement(158254..159663) FT /transl_table=11 FT /gene="dnaA" FT /locus_tag="BP0491" FT /product="chromosomal replication initiator protein" FT /note="Similar to Escherichia coli chromosomal replication FT initiator protein DnaA or B3702 SW:DNAA_ECOLI (P03004) (467 FT aa) fasta scores: E(): 3.7e-81, 53.945% id in 469 aa, and FT to Proteus mirabilis chromosomal replication initiator FT protein DnaA SW:DNAA_PROMI (P22837) (466 aa) fasta scores: FT E(): 1.3e-81, 53.105% id in 467 aa" FT /db_xref="GOA:Q7VSE0" FT /db_xref="HSSP:1J1V" FT /db_xref="InterPro:IPR013317" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSE0" FT /protein_id="CAE44820.1" FT /translation="MKEFWQTCVSRLEQELPPQQISAWIRPLVPLAYDEAQAVLRVAAP FT NRFKLDWVRKNFSHQIEALAAEWYQRPVQVTFELPGTSSAPRIPMAVPRPVAVSVPAVV FT AAVQQASEPAPPAPASADAANIVYERSRLNTDLTFENFVTGKANQLARAAALQVAENPG FT TSYNPLFLYGGVGLGKTHLIHAIGNAMVAAGTGVRVRYVHADQYVSDVVKAYQRKAFDD FT FKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFEAMVAQRKQIIITSDTYPKELSGIDS FT RLISRFDSGLTVAIEPPELEMRVAILLRKAESEGVPMPEEVAFFIAKHLRSNVRELEGA FT LRKVLAYARFHGRDVLTVDVCKEALKDLLSVSNGQITVENIQKTVADFYKIKVADMYSK FT RRPANIALPRQVAMYLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKISDARAKQAELNH FT TLHVLEQTLKG" FT misc_feature complement(158326..158385) FT /note="ScanRegExp hit to PS01008, DnaA protein signature. FT Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(158326..159267) FT /note="HMMPfam hit to PF00308, Bacterial dnaA protein" FT misc_feature complement(159124..159147) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 160069..160203 FT /transl_table=11 FT /gene="rpmH" FT /gene_synonym="ssaF" FT /gene_synonym="rimA" FT /locus_tag="BP0492" FT /product="50S ribosomal protein L34" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L34 RpmH or SsaF or RimA or B3703 or Z5194 or Ecs4638 FT SW:RL34_ECOLI (P02437) (46 aa) fasta scores: E(): 1e-10, FT 65.909% id in 44 aa, and to Neisseria meningitidis 50S FT ribosomal protein L34 RpmH or Nma0551 or nmb1904 FT SW:RL34_NEIMA (Q9JRA1) (44 aa) fasta scores: E(): 3.1e-14, FT 86.364% id in 44 aa" FT /db_xref="GOA:Q7VSD9" FT /db_xref="InterPro:IPR000271" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSD9" FT /protein_id="CAE44821.1" FT /translation="MKRTYQPSVTRRKRTHGFRVRMKTRAGRAILNARRAKGRKRLAV" FT misc_feature 160069..160200 FT /note="HMMPfam hit to PF00468, Ribosomal protein L34" FT misc_feature 160072..160131 FT /note="ScanRegExp hit to PS00784, Ribosomal protein L34 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 160299..160670 FT /transl_table=11 FT /gene="rnpA" FT /locus_tag="BP0493" FT /product="ribonuclease P protein component" FT /EC_number="3.1.26.5" FT /note="Similar to Escherichia coli ribonuclease P protein FT component RnpA or B3704 SW:RNPA_ECOLI (P06277) (119 aa) FT fasta scores: E(): 0.00048, 30.894% id in 123 aa, and to FT Neisseria meningitidis ribonuclease P protein component FT RnpA or Nmb1905 SW:RNPA_NEIMB (Q9JXS6) (121 aa) fasta FT scores: E(): 1e-05, 38.679% id in 106 aa" FT /db_xref="GOA:Q7VSD8" FT /db_xref="InterPro:IPR014721" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSD8" FT /protein_id="CAE44822.1" FT /translation="MPRATLPAEARLHRPSEFAAALKGRRLARGAFFIVSASPCAPADD FT QPARARLGLVIAKRFAARAVTRNTLKRVIREAFRARRLALPAQDYVVRLHSKLTPASLT FT ALKRSARAEVDAHFTRIAR" FT misc_feature 160314..160664 FT /note="HMMPfam hit to PF00825, Ribonuclease P" FT CDS 160667..160939 FT /transl_table=11 FT /locus_tag="BP0494" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas putida hypothetical 9.2 kDa FT protein in rnpA 3'region SW:YIDD_PSEPU (P25753) (81 aa) FT fasta scores: E(): 2.2e-18, 65.714% id in 70 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa2045 FT SW:YK45_PSEAE (Q9I270) (86 aa) fasta scores: E(): 3.4e-16, FT 57.831% id in 83 aa" FT /db_xref="InterPro:IPR002696" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSD7" FT /protein_id="CAE44823.1" FT /translation="MIRRLLIAPIRFYRYFLSPWVGRQCRFTPTCSAYAIEAIERHGAW FT RGLWLAARRIGRCHPWSPGGYDPVPPGHGAGAQACCAHRHRTEPD" FT misc_feature 160670..160873 FT /note="HMMPfam hit to PF01809, Domain of unknown function FT DUF37" FT CDS 160988..162679 FT /transl_table=11 FT /locus_tag="BP0495" FT /product="probable inner-membrane protein" FT /note="Similar to Pseudomonas putida 60 kDa inner-membrane FT protein homolog SW:60IM_PSEPU (P25754) (560 aa) fasta FT scores: E(): 1.2e-81, 43.750% id in 576 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa5568 FT TR:Q9HT06 (EMBL:AE004968) (578 aa) fasta scores: E(): FT 1.6e-67, 42.905% id in 592 aa" FT /db_xref="GOA:P65622" FT /db_xref="InterPro:IPR019998" FT /db_xref="UniProtKB/Swiss-Prot:P65622" FT /protein_id="CAE44824.1" FT /translation="MDIRRTVLWMIFSFSLLLLWNNWQIHNGKPSLFGGPAPEAAATQQ FT PKADANGTAASSTASIPSSPAAAPAAASVPGAAAPAAAKSEQVVITTDVLRLTFDSNGA FT QLIRAELLKYPSSSQSDKPTVLMDRSADLVYVAQTGVVGAPQGESFPTHQTPFHLVSSE FT RSLTGDTLDVVFEAESGGLKVTKTYTLHRGRYDVDVRHAMANTGGAPLNPALYLQLERD FT GTDPAGTSSFYHTFTGVAVYSEQDKFQKVTFSDIEKKKGTYIKQADNGWIGIVQHYFAT FT AWIPAQGKQRTNELLQVQQNLYAARTIEAVGTIAPGSSANVDAHLWVGPQDQKAMAAVA FT PGLELVVDYGWLTIIAKPLFTLMTWLHGLLGNWGWTIVALTVIIKAVFFPLAAASYRSM FT ARMKQVAPRLQALKEKYGDDRQKLNQAMMEMYRTEKINPLGGCLPMVVQIPVFIALYWV FT LLASVEMRGAPWILWVHDLSVRDPFFILPAIMMATMFLQIKLNPTPPDPVQAKVMMIMP FT LVFGGMMFFFPAGLVLYWCVNNTLSIAQQWTITRNLERQAAAAANR" FT misc_feature join(161006..161059,162104..162172,162299..162367, FT 162524..162592) FT /note="4 probable transmembrane helices predicted for FT BP0495 by TMHMM2.0 at aa 7-24, 373-395, 438-460 and FT 513-535" FT misc_feature 161210..161416 FT /note="HMMPfam hit to PF02096, 60Kd inner membrane protein" FT misc_feature 161528..162649 FT /note="HMMPfam hit to PF02096, 60Kd inner membrane protein" FT CDS complement(162910..163860) FT /transl_table=11 FT /locus_tag="BP0496" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE44825.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 162910..162941 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(162910..163962) FT misc_feature complement(162946..163479) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(163537..163602) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(163931..163962) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(163942..164196) FT /pseudo FT /transl_table=11 FT /gene="acpD'" FT /locus_tag="BP0497" FT /product="N-terminal region of acyl carrier protein FT phosphodiesterase (pseudogene)" FT /EC_number="3.1.4.14" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. The C-terminal region of this CDS is FT BP3054. Similar to the N-terminal regions of Escherichia FT coli acyl carrier protein phosphodiesterase AcpD FT SW:ACPD_ECOLI (P41407) (200 aa) fasta scores: E(): 4.3e-07, FT 40.476% id in 84 aa, and Pseudomonas aeruginosa FT hypothetical protein PA1962 TR:Q9I2E2 (EMBL:AE004622) (202 FT aa) fasta scores: E(): 4e-06, 45.570% id in 79 aa." FT /db_xref="PSEUDO:CAE44826.1" FT CDS 164318..165241 FT /transl_table=11 FT /locus_tag="BP0498" FT /product="LysR-family transcriptional regulator" FT /note="Similar to Rhizobium meliloti putative transcription FT regulator protein Smc01330 TR:CAC45914 (EMBL:AL591787) (313 FT aa) fasta scores: E(): 1.1e-45, 44.027% id in 293 aa, and FT to Pseudomonas aeruginosa probable transcriptional FT regulator Pa1961 TR:Q9I2E3 (EMBL:AE004622) (311 aa) fasta FT scores: E(): 2.4e-42, 43.464% id in 306 aa" FT /db_xref="GOA:Q7VSD5" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VSD5" FT /protein_id="CAE44827.1" FT /translation="MQDLNDLYYFAQVVEQGGFSAASRVLDVPKSRLSRRISQLEDRLG FT VRLLQRTTRRLRLTTAGERYLHYCQEMTASARAAEDAMRQLQSAPAGPVVVSCPVSIAQ FT QMLAPLLPEFLDAWPSVSVQLLVTNRRVDVIREGVDLALRVRTKLDTDAELVVKHLGIA FT SGTLVASPAYLQRHGTPETPQELASHRTLSFNDPQNEVRWPLTNQRGESVEVAVQPVLA FT SNDFIVLTQAAVRGRGIALLPSMASEAELRRGELVRVLPDWRSPEGIVHCIYPSRRGMM FT PAVRAFLDFLAKRVPPLVRQSDTARP" FT misc_feature 164327..164746 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 164366..164431 FT /note="Predicted helix-turn-helix motif with score 1087 FT (+2.89 SD) at aa 17-38, sequence GGFSAASRVLDVPKSRLSRRIS" FT CDS complement(165250..165648) FT /transl_table=11 FT /locus_tag="BP0499" FT /product="hypothetical protein" FT /note="no significant database matches" FT /db_xref="GOA:Q7VSD4" FT /db_xref="InterPro:IPR010261" FT /db_xref="UniProtKB/TrEMBL:Q7VSD4" FT /protein_id="CAE44828.1" FT /translation="MFPLLIRNLRHLLGLPVGADEPVTSLAIDEQWAVHIGCEDDMVTV FT LLPLGPAPDPLPGAALVNSLAQWPPVLLDLSEQGEAILWAREHVGRLTAEQLHALLVRV FT AARAAALMAPAAAPPAPQDTAEVAGRKA" FT CDS 165890..167860 FT /transl_table=11 FT /locus_tag="BP0500" FT /product="hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VSD3" FT /protein_id="CAE44829.1" FT /translation="MLSNNVNPVVGLSYRPLPETPPSGQAAAHPSMRLLEPNNDEFVRS FT VASPRLHHSSEALREVKHDVRQFQASGDRSLQQLRDLEVALNHWEASQPREFAKRGGLV FT AELRTAIDAYKQQLHEQAPSHANLDVKWLDGLRAGSMALQGDVKVWMQNLEDLHTRRPD FT EFAARLQQSTDALYSHLEAQWAKQHGTPPTASDVAGMPQWQEYTAMLRERFAGLDTIRP FT NLTAEENGVAILKTQTQLLALQRAQEALQASLADGVSHQGDVGLLRTQLLAGMVEGLIA FT LQQADDDSALWSRPSAADSGGRLSVEAGAKASTDFEAPASKGELLRGKGISGEAVLEAF FT ANIEMSVSGSRAGAAGEAEGSLRLYGESTARAEVSGSFEPFALSGSIGREEADGDTAAS FT ANPVLSLNVSAELSSKLGLEAQGSVTLGSLLKLDAEGRAEVGASAEVSGAAAIDKRSDG FT LSVRLEAQAEAFAGLKAEGTLTANLLHSKYADAHGLTASVTGSAANVGLGATAEGKLVA FT SPGQFEMGGEVGTTLGVGGNIGWNSKVDVNASTAYAYELASAAMARFDALRASQLDHDA FT KTSGNESQLNRLAANLQSHIDATSQKLDALNSASRIRKVDGFAAGDGAQAAAGLAAQMA FT LVGTGADLSHDIKITALNLRA" FT CDS complement(167886..169163) FT /transl_table=11 FT /locus_tag="BP0501" FT /product="C-terminal region of two component sensor kinase FT (partial)" FT /note="Partial. This CDS is the C-terminal region of BP3351 FT which was disrupted by the integration of a prophage. FT Similar to Salmonella enterica TctE TR:Q9FA47 FT (EMBL:AF020810) (488 aa) fasta scores: E(): 1.5e-21, FT 30.079% id in 379 aa, and to Pseudomonas aeruginosa FT probable two-component sensor Pa0757 TR:Q9I5H2 FT (EMBL:AE004510) (460 aa) fasta scores: E(): 4.6e-24, FT 37.500% id in 376 aa" FT /db_xref="GOA:Q7VSD2" FT /db_xref="HSSP:1BXD" FT /db_xref="InterPro:IPR003594" FT /db_xref="UniProtKB/TrEMBL:Q7VSD2" FT /protein_id="CAE44830.1" FT /translation="MRKYYRIEEIDPPWPENLPGMPREPGRALSGMPEMPRPPYWPRSN FT GQPVFFDAVYRNDPVRAVAVVRDLYYRNQHRQVLVVVAESIGKRVEAEASAQRQEVLRD FT TRMLALVALLVWWGVNWALRPLVRLRNDIRTRRPDDLTPLDATRVPSEVAPLVEAVNHH FT IARHRRVLDEQSQFLADASHQLRTPLAIMLTQAQYALRERDPVRAQEGLRAIVDQLGRT FT RCLTEQLLSLAHASQADAPPRQELDLNDVARDVVLQYLPLAHEKQQDLGWVDARGDEAE FT GASDTAVVPVWGSEVELHEALSNLVHNAINYAPAGAHITVSVVRYPGRAEVQVADDGPG FT IEPLLRARAFARFDRMAGDRHASSSGSGLGLSIARAYARRNDGDIELRDGEPNAQGGIG FT LCAVFWIPLYDQSAPADEAEAFRRSG" FT misc_feature complement(167934..168287) FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, phytochrome-like ATPase" FT misc_feature complement(168450..168647) FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain" FT CDS 169347..170336 FT /transl_table=11 FT /locus_tag="BP0502" FT /product="integrase" FT /note="Similar to Escherichia coli shufflon-specific DNA FT recombinase Rci SW:RCI1_ECOLI (P10487) (384 aa) fasta FT scores: E(): 7.5e-17, 30.796% id in 289 aa, and to FT Pasteurella multocida putative integrase/recombinase Rci FT TR:Q9L6A5 (EMBL:AF237934) (329 aa) fasta scores: E(): FT 2.4e-36, 37.651% id in 332 aa" FT /db_xref="GOA:Q7VSD1" FT /db_xref="InterPro:IPR002104" FT /db_xref="UniProtKB/TrEMBL:Q7VSD1" FT /protein_id="CAE44831.1" FT /translation="MGTYRKRGDTWRAEINKAGVRESKTFPTKREAQEWAAARETELAT FT IAVGGITPKSVAQVLQRYCDEISPRNKGHRWERVRIARFLKEEADLCAKLIHTISTADL FT GAWRDRRLAQVQPVSVRRDIALLRAAWGYARREWRNLKDDPWLDLTMPPEGRHRERIYT FT QDEVDRLVLALGWEEGQKVVTARQQTAVCFLLSLETAMRSGELLSLEHSQVDLKKRVAQ FT LDQTKNGDRRAVPLSSRAVALFKSLAGLNDVKVFTITPALRDVYFRQGKAIAEVDGATF FT HDARATALTRLSKKLSILELARMVGHRDPRSLMIYYRESAADIAKKLD" FT misc_feature 169347..177022 FT /note="Region of atypical GC content containing several FT phage-like genes. Potentially a degenerate integrated FT prophage." FT misc_feature 169812..170324 FT /note="HMMPfam hit to PF00589, Phage integrase family" FT CDS complement(170333..170533) FT /transl_table=11 FT /locus_tag="BP0503" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Bacteriophage P4 hypothetical 9.7 kDa FT protein SW:Y9K_BPP4 (P12552) (88 aa) fasta scores: E(): FT 0.82, 30.357% id in 56 aa, and to Vibrio cholerae FT transcriptional regulator Vc0497 TR:Q9KUL8 (EMBL:AE004136) FT (66 aa) fasta scores: E(): 0.023, 28.571% id in 63 aa" FT /db_xref="InterPro:IPR010260" FT /db_xref="UniProtKB/TrEMBL:Q7VSD0" FT /protein_id="CAE44832.1" FT /translation="MEDRFITHTEIASLLQLNPAHVRDRLTKRKDFPRPFIFGGARRWK FT YSEVEDWIDGRRQAPDGRRAA" FT CDS complement(170534..170653) FT /transl_table=11 FT /locus_tag="BP0504" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VSC9" FT /protein_id="CAE44833.1" FT /translation="MPDLPYLALLGIAVGAVVVLALALHRWLNREIEKEEREE" FT misc_feature complement(170570..170635) FT /note="1 probable transmembrane helix predicted for BP0504 FT by TMHMM2.0 at aa 6-28" FT misc_feature complement(170591..170653) FT /note="Signal peptide predicted for BP0504 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.808) with cleavage site FT probability 0.771 between residues 21 and 22" FT CDS complement(170646..170987) FT /transl_table=11 FT /locus_tag="BP0505" FT /product="phage-related conserved hypothetical protein" FT /note="Similar to Bacteriophage D3 Orf39 orf39 TR:Q9MC83 FT (EMBL:AF165214) (108 aa) fasta scores: E(): 0.018, 36.937% FT id in 111 aa, and to Mycobacteriophage TM4 Gp13 TR:Q9ZX64 FT (EMBL:AF068845) (139 aa) fasta scores: E(): 9.6, 32.609% id FT in 92 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VSC8" FT /protein_id="CAE44834.1" FT /translation="MELAAKAAGMGVWPGTGFQAHMLFTRPAKADPDGKVAGIEWNPLT FT DDGDALRLAVKLRLWVHVDDYGGSARRPGDTWFGCAAHKYGGIEAATRRAIVRAAAEIG FT AKMQEAAHA" FT CDS complement(170998..172185) FT /transl_table=11 FT /locus_tag="BP0506" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VSC7" FT /protein_id="CAE44835.1" FT /translation="MMENQHQKIKGYRDLSQAEIDAMNEAKALAEQCGALVQKLRAPVA FT DERAPHIKALQDLRLGVEMDQHCMEDGDAKLAALDAAITALRWSAGALQALNIEADKIT FT LDGETRTVGDILDHADRALASAPVAGEAQPVIHQHGFAADNQRLRAINESLDKQLEEVM FT TERDEYHDMADKLANAIAHHLLVEIGEHSSSNCPWMRALDAIENAAPQASAYGHKPEPL FT DTSPGHSAPQAPAGWRWTLHPAGLHPDVYAAAAARDSAEDVRNAALEEAAQVLDRLHYE FT NRRYHTKFRQAANAVRTLKSTPAPTAAEDSQASEAVRDADIPASLAQLVAAVKGMTKLY FT PHVWDRTDGGLVVFPENVARFDAAFDALRIAVGEAADDDETAVLAARKEGDGNAN" FT CDS complement(172219..172746) FT /transl_table=11 FT /locus_tag="BP0507" FT /product="hypothetical protein" FT /note="Similar to the internal region of Bordetella FT pertussis pertactin outer membrane protein PrnA TR:AAK92093 FT (EMBL:AF348485) (910 aa) fasta scores: E(): 2.5, 25.767% id FT in 163 aa, and to Bordetella pertussis pertactin Prn7 FT TR:Q9S6N1 (EMBL:AJ133784) (910 aa) fasta scores: E(): 3.4, FT 24.540% id in 163 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VSC6" FT /protein_id="CAE44836.1" FT /translation="MFSLQEQTAILAHLNVRTERHGDEPAGGADLKISFTTGNGILSEF FT HPRLRHGLYKAEEAPNQAEMAVGEALTERIYADLIDRVRLKHDLKGAKVLIGFGLGGSS FT DIQMDPVDVDGFQAELHEGGSVTLTFRVKCHPTGEQVKKLHEVLGNEITISVTPAIEKQ FT GALGLNLEPEAA" FT CDS complement(172804..173451) FT /transl_table=11 FT /locus_tag="BP0508" FT /product="phage-related exonuclease" FT /note="Similar to Escherichia coli O157:H7 exonuclease FT Ecs1174 TR:BAB34597 (EMBL:AP002554) (226 aa) fasta scores: FT E(): 2.4e-11, 30.918% id in 207 aa, and to Bacteriophage FT VT2-Sa exonuclease Exo TR:Q9T1N7 (EMBL:AP000363) (226 aa) FT fasta scores: E(): 2.8e-11, 30.918% id in 207 aa" FT /db_xref="GOA:Q7VSC5" FT /db_xref="InterPro:IPR019080" FT /db_xref="UniProtKB/TrEMBL:Q7VSC5" FT /protein_id="CAE44837.1" FT /translation="MNRYILSPHEQGSDGWLPDRCGRVTGSRAADMLAMTAKKEWSTKR FT ADYKFELAIEVLTGMPQGSDYTSKEMQWGIDQEPFARMAYEEASGNVAIESGFMYLPDV FT AAGCSVDGLFVEDGRRGVLETKCPKSTTHIRYLEAGTLPDQYRPQCLHNVWVTGAEFAD FT FVSFDPRFPEELQLFVCRFIPTAKELADHEKAVLQFLAERDELVVQLKRLAA" FT CDS complement(173448..174434) FT /transl_table=11 FT /locus_tag="BP0509" FT /product="phage-related DNA recombination protein" FT /note="Similar to Escherichia coli RecT protein RecT or FT B1349 SW:RECT_ECOLI (P33228) (269 aa) fasta scores: E(): FT 3.4e-09, 30.047% id in 213 aa, and to Escherichia coli FT O157:H7 recombinase RecT protein Ecs1933 TR:BAB35356 FT (EMBL:AP002556) (269 aa) fasta scores: E(): 1.3e-09, FT 30.516% id in 213 aa" FT /db_xref="GOA:Q7VSC4" FT /db_xref="InterPro:IPR018330" FT /db_xref="UniProtKB/TrEMBL:Q7VSC4" FT /protein_id="CAE44838.1" FT /translation="MNNLAVITQDIYNARESFAAVLTDQSISFEKEAGFAIQVLQNNDY FT TLKVATGNRQSVINAVTNVAAIGISLNPAKRQAYLVPRDGRICLDISYMGLIDPAVATG FT SIRWAQAELVRSADTFALNGFDAPPTHVFNPFSKERGEIIGAYVVVKTADGDYLTTPMS FT RDEIDGIMNRSQSVKSGKSSPWKTDYGEMAKKTVVKRAYKYWPKNDRLSEAIHHLNTDG FT GEGLATTASAPVDPDLLPRLRKAVDAARDAAALEKVWKDGLAEVRATRDMAIYNAFKSA FT VAARGAVLRGEAVPTEPPPDDGKTIDEPPRDPSDDGFGRDDQGGIQE" FT CDS complement(174438..174620) FT /transl_table=11 FT /locus_tag="BP0510" FT /product="phage-related putative membrane protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VSC3" FT /protein_id="CAE44839.1" FT /translation="MSRRLIAYLRATRLDLDLAGYAAMVAALAVATGLIGPTLDARSTL FT TACEGCGKTAVAAKE" FT misc_feature complement(174459..174482) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature complement(174504..174560) FT /note="1 probable transmembrane helix predicted for BP0510 FT by TMHMM2.0 at aa 20-39" FT CDS complement(174617..174994) FT /transl_table=11 FT /locus_tag="BP0511" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="InterPro:IPR010916" FT /db_xref="UniProtKB/TrEMBL:Q7VSC2" FT /protein_id="CAE44840.1" FT /translation="MLPLTYPTECGTAAVVRPLTDAERLAELRRDLDADLHYALVAQRC FT VRWPYGDPELVAEALYAATIGDAQSEAAFSLLVRAAARGESAVSVGTLFVEWTKLARAR FT LLDTLVELTEDGQRVTFGSRQ" FT misc_feature complement(174752..174994) FT /note="ScanRegExp hit to PS00430, TonB-dependent receptor FT proteins signature 1." FT CDS complement(join(174997..175065,175065..175187)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0512" FT /product="phage-related hypothetical protein (pseudogene)" FT /note="no significant database matches" FT /db_xref="PSEUDO:CAE44841.1" FT CDS complement(175228..175695) FT /transl_table=11 FT /locus_tag="BP0513" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VSC1" FT /protein_id="CAE44842.1" FT /translation="MSDTKATLKFEVTLADLRRDGACFEGYNKVVRAVQGREFSGDDSE FT RESYIKFSHAEPVALTAILASNGLDDALWALRCVPGVDRDARLFAVWCARQVEHLMTDQ FT RSKDALDVAERFANGEATEEERAAARAAAWAAQKEMFIAMCEGRAPWQQTT" FT CDS complement(175731..176681) FT /transl_table=11 FT /locus_tag="BP0514" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA9" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA9" FT /protein_id="CAE44843.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHYYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT repeat_region 175732..175762 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(175732..176783) FT misc_feature complement(175767..176300) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(176358..176423) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT CDS complement(176780..177022) FT /transl_table=11 FT /locus_tag="BP0515" FT /product="phage-related hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VSC0" FT /protein_id="CAE44844.1" FT /translation="MEAKLIERVALNDEFQAACQRYAHGNGSSMAIAGEALRAAGMPEL FT LQAAVLVRDYLHRNGTRQGDVPLALIEAIRATGAA" FT CDS complement(177189..177830) FT /transl_table=11 FT /locus_tag="BP0516" FT /product="hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VSB9" FT /protein_id="CAE44845.1" FT /translation="MKPLLVAALSATALLVGCAAKQPQLTRSEYLKVTQRTYEGKSAEE FT VLNAAEKLFRLADGDDFKFFHDDDSMSASRSWIVYVVLAAAMGTDTWTVRTKEIPGGVR FT VSAALNTSAGSVLPMPTTGGDMSAGTTPGMGGNVPGTAIYDVFWARMDYLLGLSDQWMT FT CEESNRRVSTGAVWGPNDALCNGFNVKDDLPAELVGKIEKPKPSSTFNDG" FT CDS complement(177841..178791) FT /transl_table=11 FT /locus_tag="BP0517" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7VSB8" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7VSB8" FT /protein_id="CAE44846.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHYYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 177841..177872 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(177841..178893) FT misc_feature complement(177877..178410) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(178468..178533) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(178862..178893) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(178901..179296) FT /transl_table=11 FT /locus_tag="BP0518" FT /product="conserved hypothetical protein" FT /note="Similar to Saccharomyces cerevisiae highdosage FT growth inhibitor Hig1 TR:BAB20815 (EMBL:AB050475) (129 aa) FT fasta scores: E(): 6.3e-10, 34.579% id in 107 aa, and to FT Halobacterium sp Vng2099C TR:Q9HNH7 (EMBL:AE005099) (127 FT aa) fasta scores: E(): 2e-10, 38.532% id in 109 aa" FT /db_xref="HSSP:1JD1" FT /db_xref="InterPro:IPR006175" FT /db_xref="UniProtKB/TrEMBL:Q7VSB7" FT /protein_id="CAE44847.1" FT /translation="MPASTAPARYLAPDTLARPGGHYSHACVANGMVYVSGQLPIGPDG FT TKLADAPFEAQARQVLDNVAAALAAAGSGIDRLVQVRVYVDSVENWPAFDAIYAEWAGA FT ARPARAVVPTGPLHYGFKVEVEAVALA" FT misc_feature complement(178904..179254) FT /note="HMMPfam hit to PF01042, YjgF family" FT CDS 179466..180167 FT /transl_table=11 FT /locus_tag="BP0519" FT /product="probable glutathione S-transferase" FT /note="Similar to Loligo opalescens S-crystallin TR:Q25368 FT (EMBL:U19300) (217 aa) fasta scores: E(): 3.2e-06, 24.537% FT id in 216 aa, and to Rhizobium meliloti probable FT glutathione S-transferase protein TR:CAC49678 FT (EMBL:AL603646) (240 aa) fasta scores: E(): 5.3e-42, FT 52.321% id in 237 aa" FT /db_xref="GOA:Q7VSB6" FT /db_xref="InterPro:IPR010987" FT /db_xref="UniProtKB/TrEMBL:Q7VSB6" FT /protein_id="CAE44848.1" FT /translation="MAYDLWYWDGIPGRGEFVRLALEAGKIPYRDRAREPGEDMLADMR FT RRRDTAPFAPPYLVADGMTIAQTANILLFLGVEHGLAPPDRAGRLWVNQLQLTIADLTA FT EAHDVHHPVAAGLYYEDQQDVALRRAADFRETRMPKFMQYFEQALDRPGGWLTDMGRWS FT YADLSLYHVVEGLLHAFPRRMRTLMHRYPRLMTLHARVAELPELRGYLASDRRLPFGDG FT IFRHYPELDGA" FT misc_feature 179631..180080 FT /note="HMMPfam hit to PF00043, Glutathione S-transferase, FT C-terminal domain" FT CDS 180431..181291 FT /transl_table=11 FT /locus_tag="BP0520" FT /product="putative exported protein" FT /note="Similar to Escherichia coli HflC protein HflC or FT HflA or B4175 or Z5782 or Ecs5151 SW:HFLC_ECOLI (P25661) FT (334 aa) fasta scores: E(): 2.4e-06, 24.806% id in 258 aa, FT and to Thermotoga maritima FtsH protease activity modulator FT HflC Tm1823 TR:Q9X2E3 (EMBL:AE001819) (283 aa) fasta FT scores: E(): 4.3e-09, 26.210% id in 248 aa" FT /db_xref="InterPro:IPR001107" FT /db_xref="UniProtKB/TrEMBL:Q7VSB5" FT /protein_id="CAE44849.1" FT /translation="MIPRNAKLAAGAGVLFVLILMLAFSSWFQVDQGERGVVLRNGKLV FT RVSEPGLDFKTPFIDSVSTVSVRDHTFIFENLEAYSYDQQPATLRVSVTYRVPAEHVAE FT LYAEYGTISNLQMRVLERKTPDAVKNVFGRYTAVRAIQERQKLGVDVNAAVLSAMDGAP FT VQIVGVQVEEVGFSKAYEHSIEQRMLAQVQIETTRQQKETAMITAEIQVVKAKAEADAR FT RQQFTAEADGIRLRGEAEAASIRAKAEALVANTNLVSLNAVEKWDGVLPATQVPGAALP FT FIGIK" FT misc_feature 180431..180505 FT /note="Signal peptide predicted for BP0520 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.990) with cleavage site FT probability 0.781 between residues 25 and 26" FT misc_feature 180449..180517 FT /note="1 probable transmembrane helix predicted for BP0520 FT by TMHMM2.0 at aa 7-29" FT misc_feature 180464..181093 FT /note="HMMPfam hit to PF01145, SPFH domain / Band 7 family" FT CDS complement(181366..181701) FT /transl_table=11 FT /locus_tag="BP0521" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli hypothetical 12.0 kDa FT protein in baeR-ogrK intergenic region YegP or B2080 FT SW:YEGP_ECOLI (P76402) (110 aa) fasta scores: E(): 2.1e-17, FT 54.545% id in 110 aa, and to Pasteurella multocida FT hypothetical protein Pm0519 TR:Q9CNB3 (EMBL:AE006087) (114 FT aa) fasta scores: E(): 7.9e-14, 47.222% id in 108 aa" FT /db_xref="InterPro:IPR010879" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSB4" FT /protein_id="CAE44850.1" FT /translation="MSGYFVLKASGTQYMFNLHAGNHEIILTSERYTSKASAQDGIASV FT QKNAPDDARYQRLTAKDGSPYFSLTATNGQSIGRSEMYKTTQARDNGIASVKSNAPGAP FT TKDQTQA" FT CDS complement(181842..182987) FT /transl_table=11 FT /locus_tag="BP0522" FT /product="putative metal-activated pyridoxal enzyme" FT /note="Similar to Arthrobacter sp metal-activated pyridoxal FT enzyme TR:O82872 (EMBL:AB010956) (379 aa) fasta scores: FT E(): 1.6e-16, 31.026% id in 390 aa, and to Agrobacterium FT tumefaciens Agr_l_1808p TR:AAK89478 (EMBL:AE008289) (397 FT aa) fasta scores: E(): 7.1e-74, 55.526% id in 380 aa" FT /db_xref="InterPro:IPR001608" FT /db_xref="UniProtKB/TrEMBL:Q7VSB3" FT /protein_id="CAE44851.1" FT /translation="MTTTHAHPLDTLDTPAAIVDVARMQHNIARMQDRMNGLGVSLRPH FT VKTSKCTPVALAQLAAGAHGVTVSTLKEAEQFFAAGITDILYAVGMAEHRLPAALALRR FT RGCDLKIITDNAGSARAIADFGRAHDEVFEVWIEIDTDGHRSGIKPEEAALLAVGAALH FT EGGMRLGGVMTHAGSSYDLDTPEALAAMAEQERAGCVRAAERLRAAGLPCPVVSVGSTP FT TALSAAQLQGVTEVRAGVYVFFDLVMHNIGVCRVDELALSVLATVIGHQADKGWVIVDA FT GWMAMSRDRGTQKQKQDFGYGQVCTADGAPLAGYTLIGANQEHGIMAGGPAGEDVTTRF FT PVGMRLRILPNHACATGAQFPQYHALEADGGLQAWERAHGW" FT CDS complement(183015..183674) FT /transl_table=11 FT /locus_tag="BP0523" FT /product="probable haloacid dehalogenase" FT /note="Similar to Pseudomonas putida 2-haloalkanoic acid FT dehalogenase H-109 DehH109 SW:HAD2_PSEPU (Q59728) (224 aa) FT fasta scores: E(): 1.5e-05, 28.241% id in 216 aa, and to FT Thermus thermophilus hypothetical 24.1 kDa protein YsaA FT TR:Q9F1Q2 (EMBL:AB048605) (218 aa) fasta scores: E(): FT 6.3e-07, 35.567% id in 194 aa" FT /db_xref="GOA:Q7VSB2" FT /db_xref="InterPro:IPR005833" FT /db_xref="UniProtKB/TrEMBL:Q7VSB2" FT /protein_id="CAE44852.1" FT /translation="MSIATPTGYPRAVLFDLLTGLLDSWTAWNAAAGSEPAGRAWRAEY FT LRLAYGCGRYVPYEQLVREAARATGLPESAPAALEAGWHELPVWDDARALLRALRPHCK FT LAVVTNCSRDLGRQAAGLLGVDWDAIVTAEEAGFYKPDPRPYRMALQALQVPADAAAFV FT AGSGHDLFGTAAVGLRTCWHNRLGLARPQGAPEPELQSATLAVALPWLQAFRPAVR" FT misc_feature complement(183117..183647) FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase" FT CDS join(183767..184543,184551..184682) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0524" FT /product="probable transcriptional regulator (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 259. The frameshift occurs within FT a polymeric tract of (GGCGCGC)3. The sequence has been FT checked and believed to be correct. Similar to Pseudomonas FT aeruginosa probable transcriptional regulator Pa3565 FT TR:Q9HY52 (EMBL:AE004777) (306 aa) fasta scores: E(): FT 4.4e-27, 36.700% id in 297 aa, and to Agrobacterium FT tumefaciens Agr_l_412gMp TR:AAK89475 (EMBL:AE008289) (304 FT aa) fasta scores: E(): 5.2e-45, 43.478% id in 299 aa" FT /db_xref="PSEUDO:CAE44853.1" FT misc_feature 183776..184144 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 183818..183910 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT variation 184531..184551 FT /note="(GGCGCGC)3 in pertussis; (GGCGCGC)2 in parapertussis FT and bronchiseptica" FT CDS 184679..184885 FT /transl_table=11 FT /locus_tag="BP0525" FT /product="putative integrase (Remnant)" FT /note="Pseudogene (remnant). Similar to the N-terminal FT region of Escherichia coli putative lambdoid prophage Rac FT integrase IntR or B1345 SW:INTR_ECOLI (P76056) (411 aa) FT fasta scores: E(): 0.7, 39.583% id in 48 aa, and to FT Bacteriophage 933W integrase Int TR:Q9XJG6 (EMBL:AF125520) FT (444 aa) fasta scores: E(): 5.1, 37.778% id in 45 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VSB1" FT /protein_id="CAE44854.1" FT /translation="MSGKFEGVRPASESSIEISFVYQGRTCVRRLRMKPTVANLKRAAE FT QRAAIVETIARGEFDPLVAPRRQ" FT CDS 184994..185119 FT /transl_table=11 FT /locus_tag="BP0526" FT /product="hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VSB0" FT /protein_id="CAE44855.1" FT /translation="MRAPFYLSEEDNMKTCIHALAAVSGDARDQRETDAEMRYGK" FT CDS 185151..185282 FT /transl_table=11 FT /gene="ecnA1" FT /locus_tag="BP0527" FT /product="entericidin A anti-toxin precursor" FT /note="Similar to Escherichia coli anti-toxin entericidin A FT precursor EcnA or B4147.1 SW:ECNA_ECOLI (P56548) (41 aa) FT fasta scores: E(): 0.86, 42.857% id in 42 aa, and to FT Rickettsia conorii hypothetical 6.7 kDa protein Rc1154 FT TR:AAL03692 (EMBL:AE008664) (64 aa) fasta scores: E(): FT 0.008, 46.512% id in 43 aa. Note in E. coli ecnA is located FT next to the bacteriolytic toxin ecnB. This is not the FT situation in B. pertusis. However, B. pertusis does possess FT an ecnB orthologue BP2531. B. pertusis also carries a FT second possible ecnA paralogue, BP2565" FT /db_xref="GOA:Q7VSA9" FT /db_xref="InterPro:IPR012556" FT /db_xref="UniProtKB/TrEMBL:Q7VSA9" FT /protein_id="CAE44856.1" FT /translation="MNNRIRAALLAAITLVALAGCNTMSGAGKDIERGGEKIQEKAQ" FT misc_feature 185151..185225 FT /note="Signal peptide predicted for BP0527 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.463 between residues 25 and 26" FT misc_feature 185169..185228 FT /note="1 probable transmembrane helix predicted for BP0527 FT by TMHMM2.0 at aa 7-26" FT misc_feature 185181..185213 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 185909..192631 FT /transl_table=11 FT /locus_tag="BP0529" FT /product="autotransporter" FT /note="Similar to Mycobacterium tuberculosis PgrS-family FT protein Rv3345c or Mtv004.01C or Mtv016.45C TR:O53395 FT (EMBL:AL021841) (1538 aa) fasta scores: E(): 5.8e-17, FT 26.329% id in 1618 aa, and to Salmonella typhimurium ShdA FT TR:Q9XCJ4 (EMBL:AF140550) (2035 aa) fasta scores: E(): FT 6.6e-16, 26.428% id in 2206 aa" FT /db_xref="GOA:Q7VSA8" FT /db_xref="HSSP:1C5E" FT /db_xref="InterPro:IPR001969" FT /db_xref="UniProtKB/TrEMBL:Q7VSA8" FT /protein_id="CAE44857.1" FT /translation="MGSGPSGMNERVTVNQGARIETNASAAISVGTSGQVRIEGGAVVQ FT STVNTAASGQYAKTLEAASNNNISIQVNAQLLAKGSASQSSALGLSGAGNTVTNHGTIR FT ADNAAAIWVTANTANAANTIDNYGTIETVLNGGYANAIGSTRNNSATGAGVTVRNHANG FT RIVGNVKFEAGDDSVILDGGSTITGSLNGGSGNNSLTLKAGDGTLGRAIRNFGTITKQE FT AGTWTLNGQVGRNDNNLKSTVKVEGGTLVLRGDNSGATQGGVLQVSAGATADVTAASAM FT QSISNAGTVQFTQDSNAAYAGVLSGTGSIVKRGGGDLTLTGNNTHTGKVVVEAGSLSVS FT AANNLGGAGSSVQLKGGALALKKTIVVNRGLTLDSGAQTLIIEPGTTTTWQGQVSGAGK FT LVTQGGTLVLEHASNTYSGGTEINNGTLRAAHDASLGSGTLALKNSQLAATDSFTATRA FT LTLAGNESIDVAATKILSWNGEISGAGTLVKEGQGTLLLRGTNQQNGGTTVNAGTLQIS FT RDANLGRGALALNDGTLQSTGSFATSRAATLRGQATMEVDASHTVTWNGELSGGGMLRK FT SGQGTLVLAGANTYSGGTVVEAGALRAGHEDNLGRGAITLQGGDLLAGGSFSSNRDLTL FT VRGSLDVARDATLTWSGAISGAGDLVKKGDGRLTLTGVNEYAGQTVLRGGKLRVARDEN FT LGRGALVLEDNTVFESMGSHAATRQVTLKGAPKVETLDGTTLEWRGTVDGDGKLYKQGG FT GTLVLSGNNTYAKGVEVWGGVVQVSRDQNLGAANGAVTLNGGGLAANGDFTSNRQLELT FT AGAKAIDVAAGKDVTWRGVVNGAGALTKAGDGTLALAGANTYTGGTRLQGGTVQVSRDN FT NLGQAAGAVTFDGGRLANTGSFATARTATLNKAGQIDTDRGTTLTWNGAIGGKGELRKQ FT GAGTLVLGGANTYQGDTRVEAGTLQVSADANLGQGAVHLHDSRLATTGTFATSRRLELT FT GRGAVQAAAAATLDWRGTVAGAGTLVKEGAGTLVLAGDNQHAGGTEVRAGTLQVSRATN FT LGPGALALENAALATTASFTATQAATLTGNAAIDTAAGTTLGWEGAIGGTGSLHKKGEG FT KLVLVKDNHHDGGTTIHAGTLQVSRDANLGSGQSAVTLDGGALAVSAGFSSGREIVVGA FT GHGALSVTGGHTLQWQGQVGGAGALTKTGDGTLVLEHDNTHAGGTRITGGVLRVSRDEN FT LGEAHGMLTLDGGTLSTTAGFASRRNATVGNGGGRIVVADAATLDLQGDVAGAGRLVKE FT GAGTLALGGTNTYAGGTVVEAGTLRVARDANLGGGALTLNNSRLHATAGFATGRDATLS FT GRASIDTDDRATLQWRGTVNGAGRLVKQGLGTLVLDGDNRYAGGTEVNAGTLQVARDAN FT LGAGDVALNGSSLAATASFATARTATLSGAAAIDTADGATLDWNGLLDGDGALVKQGNG FT TLALAAANRYGGGTIVKAGAVRIARDANLGRAGTGVTLDGGALATTADLATGRAATLGA FT ANGTLDVAAGTRLDWNGAIGGAGALTKTGAGTLALNHDNQHAGGTLVHGGTLRIARDAN FT LGAAGTAVTLDGGTLATTASLAPERALRVGARNGVLLPDAGTTLDWRGVVAGAGKLTKA FT GPGTLVLSADNRHGGGTAVTGGTLQVSRDANLGAAAGALTLDGGTLLSTASFASARVAT FT LDAAGGTFVTRDGTRLDWDGAIGGAGGLVKEGAGELRLGNANTYQGPTRIAAGRLAVNG FT SIASPVTVEQAGVLGGTGRIVGDVANRGVVAPGNSIGALTVAGNYAGTGGSLEVEAVLG FT GDAAPADRLVLDGGAASGVTPVVVKPQGGVGGLTLRGIPVVVAQGGATTAPGAFRLAQP FT LVAGAYEYQLLRGAGDGAAAQAQDWYLRTSRVERDKAGRIVKVVPFYRPEVALYAGTPM FT LMRMVGTEALGSYRERAGQPGAAAPEAGAAARRGVWARTFGRRFERSAGSEAAPSFNGS FT LAGMQLGADLYTRRSATRHADAFGVFGGYATARGDVRGLARGEIQAVGTSTLRAAQLGA FT YWTHTGPSGWYVDTVLAGTRYKQQTSSSAHVGATSRGWGMMASVEAGYPWQLNPRWQIE FT PQAQLVYQQLGIANGADRVSSVSYKTPDALTGRLGTRLAGQYAYGKAQLRPFMGVSLLH FT DFTGADTVTFAGVHSVRASRQNTAVDLKAGVDTQLGKSVGLWGQVGYGKSVGSGDGSDR FT GWSANLGLRVAY" FT misc_feature 187019..187054 FT /note="ScanRegExp hit to PS00141, Eukaryotic and viral FT aspartyl proteases active site." FT misc_feature 192542..192565 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS 192665..193264 FT /transl_table=11 FT /locus_tag="BP0530" FT /product="conserved hypothetical protein" FT /note="Similar to Burkholderia cepacia ureidoglycolate FT hydrolase AllA TR:Q9AP01 (EMBL:AF317836) (177 aa) fasta FT scores: E(): 0.0025, 28.289% id in 152 aa, and to FT Rhodobacter capsulatus probable ureidoglycolate hydrolase FT SW:ALLA_RHOCA (O68109) (161 aa) fasta scores: E(): 0.0036, FT 32.558% id in 129 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VSA7" FT /protein_id="CAE44858.1" FT /translation="MRLYWRMPTTTPALRPQDLTETAFAPYGWMLGKPLPAGDDVLRFS FT NPATDFWQEHVFDTGAGAGRETEVLWVNYRISQPGFDTLEKHLLTQQAIVPLTGAIVQI FT VARSAFDGSPDLASLAAFVVPPGQGICMRPGCWHATRISGGEVTCLMLTRRSTTLDLVR FT HLHGEPARESEIVAIVPHGLDLPARPTAEGPAPHGR" FT CDS 193537..194514 FT /transl_table=11 FT /locus_tag="BP0531" FT /product="putative exported protein" FT /note="Similar to Variovorax paradoxus 2,4-diphenoxyacetic FT acid gene cluster TR:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta FT scores: E(): 3.2e-27, 34.323% id in 303 aa, and to FT Comamonas testosteroni OrfJ protein TR:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 3.5e-28, FT 32.407% id in 324 aa" FT /db_xref="GOA:Q7VSA6" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VSA6" FT /protein_id="CAE44859.1" FT /translation="MYRIVSALAVSVTCLAGMGAAQADQGAAAYPDKPIKIVIPYSAGG FT GTDQFMRIVSERASRVLGQPITILNKPGGSTVIGVNAVIGAAPDGYTLLVSTNTSYTLI FT PYVMSPPPYAPEKSLDYVATLGQTSMVLTANKTMPSDLKTVLDSARQSPGRYTYATYGV FT GSSTHLAGEVFMNDTGVEFRHIPYKGVEAVTALAGNQVDLMIDGINAAGTMLDAGKTQA FT LVVLQRTRSQFLPDTPTLVEAGYPEAAENVISYVMAAPKGTPAAVIDKLQNSFAEALRD FT PGVLAQAKAMRTEAAFKGPAQTQAFVDSQPALFKDIVEKKNIKF" FT misc_feature 193537..193605 FT /note="Signal peptide predicted for BP0536 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.989 between residues 23 and 24" FT CDS 194549..196102 FT /transl_table=11 FT /locus_tag="BP0532" FT /product="putative substrate-CoA ligase" FT /note="Similar to Mycobacterium tuberculosis CDC1551 FT substrate--CoA ligase Mt2580 TR:AAK46884 (EMBL:AE007094) FT (547 aa) fasta scores: E(): 2.8e-44, 32.422% id in 512 aa, FT and to Rhizobium meliloti putative fatty-acid-CoA ligase FT protein Smc00261 TR:CAC46268 (EMBL:AL591788) (549 aa) fasta FT scores: E(): 1.5e-41, 32.184% id in 522 aa" FT /db_xref="GOA:Q7VSA5" FT /db_xref="InterPro:IPR000873" FT /db_xref="UniProtKB/TrEMBL:Q7VSA5" FT /protein_id="CAE44860.1" FT /translation="MQPPGHTWWDIIEEHARRFPERDALAHGDGAITYGELAARVRRCA FT AGLSARGIGAGDCVALLAPPTPDAMVCLLAAARLGALWVGLNPRYQPREMAYVIGHAQP FT KLVLSVREFEARRYADDLDAALATLAPQARRPDLLFYDSRASCDEAMLHALCDAPDAPC FT PAPFEDAAQPCMLVYTSGTTGIPKGVLLSQTALIYRSTVQARTFATQSHPVVINFAPIN FT HIGGMHFRGLSQILAGGTIIYQERYRPAEVMGLIEKHRVNMLMLGSTMLQMLIREPSFD FT MSIMRGMEWFIFSGAAIPMPILQRVKEHCPRIGSTYGLTESCGSVSYIVASDSLEAAAY FT TVGRAIPEGQLRVADEQGQPLPAGTQGELQVRGQYCMNGYLRDAAATAGAFTRDGWLKT FT GDMAQRDDDGNFRLVGRIKEMYKSGGYNVYPREIEVVLEQHPNVLMSAVIAVDDELYQQ FT VGHAHLILRPDTEVSEPELVQWCRERMANYKVPKRIFVRNSLPMLSIGKVDKIALRQQH FT " FT misc_feature 194645..195892 FT /note="HMMPfam hit to PF00501, AMP-binding enzyme" FT misc_feature 195074..195109 FT /note="ScanRegExp hit to PS00455, Putative AMP-binding FT domain signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 196110..196850 FT /transl_table=11 FT /locus_tag="BP0533" FT /product="probable transcriptional regulator" FT /note="Similar to Pseudomonas putida efflux pump regulator FT SrpS TR:Q9R9U0 (EMBL:AF061937) (259 aa) fasta scores: E(): FT 4.8e-12, 33.471% id in 242 aa, and to Streptomyces FT coelicolor putative transcriptional regulator Stah10.11C FT TR:Q9RKU6 (EMBL:AL132824) (270 aa) fasta scores: E(): FT 1.6e-11, 33.065% id in 248 aa" FT /db_xref="GOA:Q7VSA4" FT /db_xref="InterPro:IPR005471" FT /db_xref="UniProtKB/TrEMBL:Q7VSA4" FT /protein_id="CAE44861.1" FT /translation="MSNPLNRYHHILHAIAGRPGGLSLADLAAATGLPRSTTHRMATTL FT REIDYLDQDDASGNFVLGDGLIGLMRSSLAQDSKLALFDPALNFVVGRLEETAFCARLW FT NDKVDLVQAVTPTRKDQLYIYPGVGGRPLDKCSSSKAILAYLDPARIQALLEPLASSTP FT GLRVDTLMQELDQVHRQGFAICDGEIDEGVLSVACPVMSGPARGLYSIGVVGPAARLKS FT HDLQEIVAVLHSAADLAAAELLNS" FT misc_feature 196173..196238 FT /note="Predicted helix-turn-helix motif with score 1208 FT (+3.30 SD) at aa 22-43, sequence LSLADLAAATGLPRSTTHRMAT" FT misc_feature 196287..196835 FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator" FT CDS 196874..197638 FT /transl_table=11 FT /locus_tag="BP0534" FT /product="probable enoyl-CoA hydratase/isomerase" FT /note="Similar to Clostridium acetobutylicum FT 3-hydroxybutyryl-CoA dehydratase Crt or Cac2712 FT SW:CRT_CLOAB (P52046) (261 aa) fasta scores: E(): 1.8e-17, FT 31.624% id in 234 aa, and to Sulfolobus solfataricus enoyl FT CoA hydratase Orf-C09_013 or Paaf-2 TR:Q9UX44 (EMBL:Y18930) FT (252 aa) fasta scores: E(): 2.7e-17, 29.279% id in 222 aa" FT /db_xref="GOA:Q7VSA3" FT /db_xref="InterPro:IPR001753" FT /db_xref="UniProtKB/TrEMBL:Q7VSA3" FT /protein_id="CAE44862.1" FT /translation="MKEIISLEKTGAVATVTIDRGGKRNALSQEMVLRLTDIALELQQD FT TSVACIVLSGNQNEFSAGIDLGDAMRWSLDDKTQLERRAIALRGTRLCKAWEDLPQITI FT AAVEGMNVGGGIALTLACDWRAMGKSAFLFVPEVQIGIPLGWQTIPRLVNLVGPARAKQ FT IVLLGEKMSADTALEWGVADFVVADGAACAHAQDLAARIGKMPELAVRMSKQSINAYAN FT ALNHLGSHMDVDQAMLCGQTRDAVAVRDRYAR" FT misc_feature 196913..197434 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT misc_feature 197207..197239 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 197683..198018 FT /transl_table=11 FT /locus_tag="BP0535" FT /product="probable carboxymuconolactone decarboxylase" FT /note="Similar to Haemophilus influenzae hypothetical FT protein Hi1053 SW:YA53_HAEIN (Q57498) (113 aa) fasta FT scores: E(): 3.8e-17, 52.885% id in 104 aa, and to FT Neisseria meningitidis hypothetical protein Nmb1590 FT TR:Q9JYH0 (EMBL:AE002509) (111 aa) fasta scores: E(): FT 6.7e-16, 50.459% id in 109 aa" FT /db_xref="InterPro:IPR003779" FT /db_xref="UniProtKB/TrEMBL:Q7VSA2" FT /protein_id="CAE44863.1" FT /translation="MLDWNQYRSELMTRIGEIAKASPETVKGYQQLSAAGKQTNQLDAK FT TRELIALAVAVTTRCDGCIAVHAKAATDNGATKGEIAEALGVAVALNAGAALVYSARVM FT DAVDAAQ" FT misc_feature 197713..198000 FT /note="HMMPfam hit to PF02627, Carboxymuconolactone FT decarboxylase" FT CDS 198072..199001 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0536" FT /product="putative exported protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. The insertion occurred near the FT C-terminus (following codon 302), replacing the 28 FT C-terminal aa with 11 aa encoded within the IS481 element. FT It is not clear whether this insertion affects the function FT of the protein. Similar to Rhizobium meliloti conserved FT hypothetical protein Sma1927 TR:AAK65716 (EMBL:AE007292) FT (330 aa) fasta scores: E(): 1.4e-42, 48.000% id in 275 aa, FT and to Agrobacterium tumefaciens Agr_l_312p TR:AAK88723 FT (EMBL:AE008213) (329 aa) fasta scores: E(): 4.4e-39, FT 46.099% id in 282 aa" FT /db_xref="PSEUDO:CAE44864.1" FT misc_feature 198072..198140 FT /note="Signal peptide predicted for BP0536 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.958 between residues 23 and 24" FT misc_feature 198717..198767 FT /note="ScanRegExp hit to PS00237, G-protein coupled FT receptors family 1 signature." FT CDS complement(198961..199911) FT /transl_table=11 FT /locus_tag="BP0537" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE44865.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 198961..198992 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(198961..200013) FT misc_feature complement(198997..199530) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(199588..199653) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(199982..200013) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(200030..200974) FT /transl_table=11 FT /locus_tag="BP0538" FT /product="arginase" FT /EC_number="3.5.3.1" FT /note="Similar to Bacillus caldovelox arginase RocF FT SW:ARGI_BACCD (P53608) (299 aa) fasta scores: E(): 3.5e-44, FT 44.000% id in 300 aa, and to Rhizobium loti arginase FT Mll6778 TR:Q988E1 (EMBL:AP003010) (310 aa) fasta scores: FT E(): 3.2e-44, 45.847% id in 301 aa" FT /db_xref="GOA:Q7VSA1" FT /db_xref="HSSP:1CEV" FT /db_xref="InterPro:IPR006035" FT /db_xref="UniProtKB/TrEMBL:Q7VSA1" FT /protein_id="CAE44866.1" FT /translation="MIAASFPHGVSLIGAPTDIGAGQRGASMGPEALRVAGLVRLLERR FT GLQVTDRGNLQGAPNPWRPPANGYRHLNEVIGWNQLVHDAVSAELRQERLPILLGGDHS FT LAIGSISAVARYCRASGRKLRVLWLDAHADFNTNRLTPTGNVHGMPVACLCGNGPAALT FT SMAGRTPAIEPGWVRQIGIRSVDEGERNLVYDAGLEVYDMRYLDEVGMRAVMEAALAGL FT DPQTHLHVSFDVDFLDPELAPGVGTTVPGGPTYREAQLCMEMIADTGLMRSRDIVELNP FT ALDVRNKTAQVAVDLVESLFGKSTLMRRRPGSA" FT misc_feature complement(200132..200941) FT /note="HMMPfam hit to PF00491, Arginase family" FT misc_feature complement(200219..200284) FT /note="ScanRegExp hit to PS01053, Arginase family signature FT 3. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(200573..200599) FT /note="ScanRegExp hit to PS00148, Arginase family signature FT 2. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(200639..200680) FT /note="ScanRegExp hit to PS00147, Arginase family signature FT 1. Confirmed by InterPro eMOTIF pattern match." FT CDS complement(200971..202212) FT /transl_table=11 FT /locus_tag="BP0539" FT /product="ornithine aminotransferase" FT /EC_number="2.6.1.13" FT /note="Similar to Bacillus subtilis ornithine FT aminotransferase RocD SW:OAT_BACSU (P38021) (401 aa) fasta FT scores: E(): 7.1e-82, 52.083% id in 384 aa, and to Bacillus FT halodurans ornithine aminotransferase RocD or Bh3943 FT TR:Q9K5Z2 (EMBL:AP001520) (400 aa) fasta scores: E(): FT 2.7e-84, 50.249% id in 402 aa" FT /db_xref="GOA:Q7VSA0" FT /db_xref="InterPro:IPR015422" FT /db_xref="UniProtKB/Swiss-Prot:Q7VSA0" FT /protein_id="CAE44867.1" FT /translation="MNMPAPAATRRDRIEDELGAHNYQPLDVVLARGSGVWLYDTAGRR FT YLDCLSAYSAVNQGHCHPRILAAMVEQAQRLTLTSRAFRHDQLAPLYEDLARLTGAHKV FT LPMNSGAEAVETALKAVRKWGYEARGVPAGQAEIIVCANNFHGRTLGIVGFSTDPDARG FT GYGPFAPGFTVVPFGDFAALQAAVTPRTVAFLVEPIQGEAGVILPPPGYFRQVRKLCSE FT RDIVLILDEIQTGLGRTGAFLAEAHEGIEADVTLIGKALSGGFYPVSAVLSNQAVLGIF FT QPGQHGSTFGGNPLACAVARAALRVLHDEGMIDNAREQGAYFMQRLRALPGPVREVRGR FT GLMLALELEPDAGPARAYCERLMARGMLVKDTHGQTLRLSPPLIVTREQIDWACAQLAH FT VLAHSAPGSSGGPS" FT misc_feature complement(201064..202110) FT /note="HMMPfam hit to PF00202, Aminotransferase class-III" FT misc_feature complement(201421..201534) FT /note="ScanRegExp hit to PS00600, Aminotransferases FT class-III pyridoxal-phosphate attachment site." FT repeat_region 202272..202303 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 202272..203324 FT CDS 202374..203324 FT /transl_table=11 FT /locus_tag="BP0540" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q84CT8" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q84CT8" FT /protein_id="CAE44868.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT misc_feature 202632..202697 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 202755..203288 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(203293..203324) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(203321..203995) FT /transl_table=11 FT /locus_tag="BP0541" FT /product="probable transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator Pa1269 TR:Q9I475 (EMBL:AE004556) FT (222 aa) fasta scores: E(): 1.7e-28, 42.347% id in 196 aa, FT and to Rhizobium loti transcriptional regulator Mlr7144 FT TR:Q986Z8 (EMBL:AP003011) (253 aa) fasta scores: E(): FT 2.9e-20, 34.715% id in 193 aa" FT /db_xref="GOA:Q7VS99" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VS99" FT /protein_id="CAE44869.1" FT /translation="MNLVAPMPETAQRKVAGTATERAYGELRKRILEGSLAEGAPIRQD FT EVAADLGISKIPVREALVRLQSEGLVVFTPNAGATVAVLTAADYVEMLDLRLAIECRAL FT ELAVPNMAPSDLAQARRLLDAYSRHENASEWSELNAQFHDCLYAPANRPRLLAMIRSVR FT DHMGKLMRLRVTEAAGHDRSHQEHLKILAACEEGNAARAVALLRKHIEHTQREVQAYFR FT KA" FT misc_feature complement(203753..203929) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT CDS complement(204080..205075) FT /transl_table=11 FT /locus_tag="BP0542" FT /product="putative exported protein" FT /note="Similar to Pseudomonas chlororaphis hypothetical FT 35.8 kDa protein TR:Q9L3W5 (EMBL:AJ271325) (336 aa) fasta FT scores: E(): 1.2e-36, 39.264% id in 326 aa, and to FT Pseudomonas sp hypothetical 35.9 kDa protein in tcbD-tcbE FT intergenic region precursor SW:YTCB_PSESQ (P27103) (336 aa) FT fasta scores: E(): 3.5e-36, 39.144% id in 327 aa" FT /db_xref="GOA:Q7VS98" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VS98" FT /protein_id="CAE44870.1" FT /translation="MKGYARENRRRTLLAAALAGCLLAGGTAHADESGADKRPIRLIVG FT FSAGGYTDVIARILAEQLGHSLNRSVIVENRAGANGAIGATAVARSAKDGATVLLSPPG FT LITNTLISPELSYSIQDFAPVARVTSLPNMLVVSANSKYRSLAELLDGARKADGKLTYG FT SGGVGSSNHLSMALLMRQANVQMLHVPYKGSSLAETDVMAGHVESMFSGAASAIPHVNG FT GRFHALAVSGDKRIGALPDVPTVAEAGVPGYSHGTWLGLFVAAGTPAQAVAGLNQAVNK FT VMADARVQARMTDLGADASQANTVDEFTAFVQSDLAAQKTLIGNASLSGN" FT misc_feature complement(204986..205075) FT /note="Signal peptide predicted for BP0542 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 30 and 31" FT CDS complement(205230..206519) FT /transl_table=11 FT /locus_tag="BP0543" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti probable oxidoreductase FT Mll7103 TR:Q987C9 (EMBL:AP003011) (427 aa) fasta scores: FT E(): 1.1e-46, 39.394% id in 396 aa, and to Pseudomonas FT aeruginosa probable oxidoreductase Pa1028 TR:Q9I4U6 FT (EMBL:AE004535) (428 aa) fasta scores: E(): 7e-40, 37.084% FT id in 391 aa" FT /db_xref="GOA:Q7VS97" FT /db_xref="InterPro:IPR015657" FT /db_xref="UniProtKB/TrEMBL:Q7VS97" FT /protein_id="CAE44871.1" FT /translation="MDRPAHRATANPPLRRGGGGAGAMNPDRLLGEPLRLPDSLWAATA FT PAAPALPSLDGRHAADVLIIGAGFTGLSAAIRLCREGRRVIVLDAAEPGWGASGRNNGQ FT VIAGLKQDPEVIETLYPGEAGRRLVRFGSEAPGVVFRLIDEFGIDCAAGNKGWIQPAFT FT RSGLRAVERRCQAWGERGVATRLLQADELARLLGTPRYRLGWLDPRGGHVQPLAYARGL FT ARVALSLGATICGGARVEALRREAGQWLARCQAGEARAPSVIVATGGYADRLVPGLRTS FT IVPVRTAQVATRVLPEAMRREILPQGHVSSDTRQLLTSFRLSPDGRLVMGGAGATAGLE FT HARIVPFLHRAGAELFAHLGKLDWEYHWSGYFAVTTDHLPHVHEPAAGMHVSLGCNGRG FT IAISTALDIELAERVLGAPAESLSVPVSDL" FT CDS 206771..206962 FT /transl_table=11 FT /locus_tag="BP0544" FT /product="putative 4-oxalocrotonate tautomerase" FT /note="Similar to Streptococcus thermophilus putative FT 4-oxalocrotonate tautomerase subunit 4-OT TR:Q9EVV8 FT (EMBL:AJ251800) (61 aa) fasta scores: E(): 0.0013, 38.182% FT id in 55 aa, and to Sphingomonas chungbukensis FT 4-oxalocrotonate isomerase PhnL TR:Q9Z3X0 (EMBL:AF073359) FT (77 aa) fasta scores: E(): 0.0033, 36.508% id in 63 aa" FT /db_xref="GOA:Q7VS96" FT /db_xref="InterPro:IPR004370" FT /db_xref="UniProtKB/TrEMBL:Q7VS96" FT /protein_id="CAE44872.1" FT /translation="MPTVRVELSPGRSAEQKTRYMQEVTRLTVEILKCPVESVDVIFIE FT IPPTEWAHGGKFYAQPPA" FT CDS 207069..208388 FT /transl_table=11 FT /locus_tag="BP0545" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0916 TR:Q9I541 (EMBL:AE004525) (440 aa) fasta FT scores: E(): 6.7e-148, 83.524% id in 437 aa, and to FT Escherichia coli hypothetical protein YliG or B0835 or FT Z1061 or Ecs0915 SW:YLIG_ECOLI (P75802) (441 aa) fasta FT scores: E(): 1.2e-131, 73.793% id in 435 aa" FT /db_xref="GOA:Q7VS95" FT /db_xref="InterPro:IPR013848" FT /db_xref="UniProtKB/Swiss-Prot:Q7VS95" FT /protein_id="CAE44873.1" FT /translation="MSSPKVGFVSLGCPKALVDSERILTQLRTEGYEVTPEYNDADVVV FT VNTCGFIDSAKAESLEAIGEAIAENGKVIVTGCMGVEESVIRQVHPSVLAVTGPQQYEE FT VVRAVHGVAPPRQDHNPYLDLVPPQGVKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDL FT VSRPVGDVLSEAERLVRAGVKELLVISQDTSAYGVDIKYRSGFWNGRPVKTRMTELCAA FT LSELGVWTRLHYVYPYPHVDEVIGLMADGKVLPYLDIPFQHASPRILRAMKRPAFEDKT FT LARIKRWREECPDLTLRSTFIVGFPGETEEDFQYLLDWMSEAQLDRVGCFQYSPVEGAP FT ANTLDNPVPDEVKQERWERFMEHQQAISTARLSTRVGREIDVLIDSVDEEGAVGRSSAD FT APEIDGCVYVDSEQPLKAGDMVRVRVTDSDEYDLWGERIA" FT misc_feature 207081..208382 FT /note="HMMPfam hit to PF00919, Uncharacterized protein FT family UPF0004" FT misc_feature 207489..207551 FT /note="ScanRegExp hit to PS01278, Uncharacterized protein FT family UPF0004 signature. Confirmed by InterPro eMOTIF FT pattern match." FT CDS complement(208459..209028) FT /transl_table=11 FT /locus_tag="BP0546" FT /product="bacterioferritin" FT /note="Similar to Azotobacter vinelandii bacterioferritin FT Bfr SW:BFR_AZOVI (P22759) (156 aa) fasta scores: E(): FT 3.5e-05, 30.345% id in 145 aa, and to Pseudomonas FT aeruginosa probable bacterioferritin Pa4880 TR:Q9HUT3 FT (EMBL:AE004901) (177 aa) fasta scores: E(): 3.7e-41, FT 71.084% id in 166 aa" FT /db_xref="GOA:Q7VS94" FT /db_xref="HSSP:1NF6" FT /db_xref="InterPro:IPR009040" FT /db_xref="UniProtKB/TrEMBL:Q7VS94" FT /protein_id="CAE44874.1" FT /translation="MSSILGVSDMEQSATQPHRAFAVDVKAIRAKVRRDIESGAVTEGY FT RADRATVLRLLNEALATEVVCWLRYKRHAFMARGLSAEPVAAEFAEHAAEEQGHADRLA FT ERIVQLGGEPDLSPVGLLERSHAEYVEGKDLKDMIKENLIAERIAIDSYRQMVDYVGEA FT DPTTRRLLEDILAMEEEHADDLSDLL" FT misc_feature complement(208462..208881) FT /note="HMMPfam hit to PF01334, Bacterioferritin" FT CDS 209209..209796 FT /transl_table=11 FT /locus_tag="BP0547" FT /product="putative lysine decarboxylase" FT /note="Similar to Eikenella corrodens lysine decarboxylase FT TR:Q9Z4R8 (EMBL:U89166) (183 aa) fasta scores: E(): FT 7.3e-25, 43.353% id in 173 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa4923 SW:YDC3_PSEAE FT (P48636) (195 aa) fasta scores: E(): 8.9e-40, 53.684% id in FT 190 aa" FT /db_xref="InterPro:IPR005269" FT /db_xref="UniProtKB/TrEMBL:Q7VS93" FT /protein_id="CAE44875.1" FT /translation="MKIQNICVYCGSNSGRQPEYIEHAQGFARELVKRGLGLVYGGASV FT GIMGAVADTVMAEGGRVIGIIPEALMKKELAHRGLTELHVVQSMHERKTLMAQKADGFV FT ALPGGAGTLEEIFEIWTWAQLGMHQKPCGLLNIAGYYDLLGQFLNHTVDEAFMRPQHRA FT MLAIDHDPAALLDHFASYVAPTVSKWIAPGEH" FT CDS 209803..210405 FT /transl_table=11 FT /locus_tag="BP0548" FT /product="hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VS92" FT /protein_id="CAE44876.1" FT /translation="MTHAMPTQPAAPRTTACLLRDYFRAKDENRPLYMARAFAPDAVLK FT MALRTQAIAFPPESHGLAAIADTLSRKFGQTYDNVYTFYLAHPGEHAVLPEFSCDWIVG FT MTDKASGEVRVGCGSYDWVFQAEPHLVKRLTITIESMLTLPADTAGPVFGWLTALPYPW FT TDAQRVVASAPPIESLAPIMYWLRRDVRRADPTGGMA" FT CDS 210402..211058 FT /transl_table=11 FT /locus_tag="BP0549" FT /product="probable haloacid dehalogenase-like hydrolase" FT /note="Similar to Caulobacter crescentus hydrolase, FT haloacid dehalogenase-like family cc1643 TR:Q9A7S7 FT (EMBL:AE005839) (246 aa) fasta scores: E(): 2.3e-26, FT 42.574% id in 202 aa, and to Agrobacterium radiobacter VirP FT protein TR:O52276 (EMBL:AF242881) (210 aa) fasta scores: FT E(): 1.4e-21, 36.318% id in 201 aa" FT /db_xref="GOA:Q7VS91" FT /db_xref="InterPro:IPR005834" FT /db_xref="UniProtKB/TrEMBL:Q7VS91" FT /protein_id="CAE44877.1" FT /translation="MKYRLAAFDFDGTLADTLPWFESVMDGVADKYGFRKASAADKAQL FT RHRSTREIMAFLEVPVWKLPAIMAHVRQLMREIDPAVRMFAGVPAALAQLKAAGLRLAV FT CSSNSLDNVRRVLGPQTGALIDDYECGADLFGKPAKLARLMARHGVERTRCILIGDEMR FT DIDAARKAGVMAGSVAWGYNHVDALRARAPDEIFEQVADLAAVLAPGFPSFPPTP" FT misc_feature 210408..210944 FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase" FT CDS 211055..211681 FT /transl_table=11 FT /locus_tag="BP0550" FT /product="conserved hypothetical protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc2577 TR:Q9A580 (EMBL:AE005926) (204 aa) fasta FT scores: E(): 4.3e-46, 60.099% id in 203 aa, and to FT Rhizobium loti Mll0539 protein TR:Q98MK8 (EMBL:AP002995) FT (203 aa) fasta scores: E(): 9e-44, 58.000% id in 200 aa" FT /db_xref="GOA:Q7VS90" FT /db_xref="InterPro:IPR011576" FT /db_xref="UniProtKB/TrEMBL:Q7VS90" FT /protein_id="CAE44878.1" FT /translation="MSSDPTHRITDLDTLQARYGTPAPNSLTKEVDYLHPHYRAFVEAA FT PFVVLATSGPQGLDASPRGDGPGFVVIEDDRTLLLPDRRGNNRIDSLRNIVADPRVALL FT FLVPGVGETLRVNGQAEISVEPALLARFAVDGKPPRSVLRVRLETVFFQCSRAIVRSAL FT WNPDARVDRASLPSAGQILGALSAGMLDGERYDRELPERVRATVY" FT CDS complement(211704..212642) FT /transl_table=11 FT /gene="fmt" FT /locus_tag="BP0551" FT /product="methionyl-tRNA formyltransferase" FT /EC_number="2.1.2.9" FT /note="Similar to Escherichia coli methionyl-tRNA FT formyltransferase Fmt or B3288 SW:FMT_ECOLI (P23882) (314 FT aa) fasta scores: E(): 2.7e-53, 55.518% id in 299 aa, and FT to Neisseria meningitidis methionyl-tRNA formyltransferase FT Fmt or Nma0163 TR:Q9JWY9 (EMBL:AL162752) (308 aa) fasta FT scores: E(): 2.6e-54, 54.839% id in 310 aa" FT /db_xref="GOA:Q7VS89" FT /db_xref="InterPro:IPR015518" FT /db_xref="UniProtKB/Swiss-Prot:Q7VS89" FT /protein_id="CAE44879.1" FT /translation="MRLVFAGTPEFARIALDALLAAGHDVPLVLTQPDRPAGRGLKLTP FT SPVKQAALAAGIEVAQPRSLRLDGRYPDEAAAARAQLERVAPDVMVVAAYGLILPQWTL FT DLPRLGCLNIHASLLPRWRGAAPIQRAIEAGDAETGVTIMQMDAGLDTGDMLLERAVPI FT GAQQTAAQLHDELARVGGQAIVDALAALAQGGLAPRRQPDAGVTYAAKLYKAEAALDCS FT LPAAVLARRVRAFNPVPGATIRLPGLDDPVKVWRAQALEQAAGGTSGAVLRADAQGIDI FT ATGQGVLRLLELQKAGGKRQPVDVFVRGWQP" FT misc_feature complement(212079..212642) FT /note="HMMPfam hit to PF00551, Formyl transferase" FT CDS complement(212708..213220) FT /transl_table=11 FT /gene="def" FT /gene_synonym="fms" FT /locus_tag="BP0552" FT /product="polypeptide deformylase" FT /EC_number="3.5.1.31" FT /note="Similar to Escherichia coli polypeptide deformylase FT Def or Fms or B3287 SW:DEF_ECOLI (P27251) (168 aa) fasta FT scores: E(): 8.2e-32, 53.846% id in 169 aa, and to FT Neisseria meningitidis polypeptide deformylase Def or FT Nma0164 or Nmb0110 TR:Q9JQN0 (EMBL:AL162752) (167 aa) fasta FT scores: E(): 6.1e-38, 64.848% id in 165 aa. Also similar to FT BP0039, 40.881% identity (44.218% ungapped) in 159 aa FT overlap." FT /db_xref="GOA:Q7VS88" FT /db_xref="InterPro:IPR000181" FT /db_xref="UniProtKB/Swiss-Prot:Q7VS88" FT /protein_id="CAE44880.1" FT /translation="MALLSILRYPDPRLHKTAKPVAVVDDRIRQLVRDMADTMYDAPGV FT GLAATQVDVHERVVVIDVSEEGNDLRVLINPEITWKSDERQTYEEGCLSVPGIYDEVER FT AARIRCKALDQQGQPYEFEADGLLAVCVQHEIDHLDGKVFVEYLSNLKQNRIKTKLKKA FT EREAERA" FT misc_feature complement(212789..213208) FT /note="HMMPfam hit to PF01327, Polypeptide deformylase" FT CDS complement(213322..214572) FT /transl_table=11 FT /locus_tag="BP0553" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa2080 TR:Q9I235 (EMBL:AE004635) (416 aa) fasta FT scores: E(): 6.6e-108, 63.462% id in 416 aa, and to FT Rhizobium loti probable kynureninase Mll0621 TR:Q98MD7 FT (EMBL:AP002995) (415 aa) fasta scores: E(): 1.4e-87, FT 54.348% id in 414 aa" FT /db_xref="GOA:Q7VS87" FT /db_xref="InterPro:IPR015422" FT /db_xref="UniProtKB/TrEMBL:Q7VS87" FT /protein_id="CAE44881.1" FT /translation="MTTRQACLEADRRDPLAAFKDEFELPAGLIYLDGNSLGALPRGAA FT ARAAQVIGQEWGQGLIRSWNTAGWFELPARLGNKLAGLIGAGQDEVVMTDSTSLNIFKA FT LAAALRLAQRAAPQRKVIVSERDNFPTDLYMIQGMIDLLRQGYELRLVDAGLSLEQALD FT DDVAVVLLSHVNYRTGAMHDMAAVSRRAHARGALIIWDLAHAAGAVPVALDADGADFAV FT GCTYKYLNGGPGSPAFIWVAPRHRDDFWQPLSGWWGHRQPFEMADTYVPAQGIRRYLCG FT TQPIVSLATAECGLDIALRADIAQVRAKSLALGDRFIALVESRCADHPLTLATPREHAR FT RGSHVSFLHPQGYAVMQALIARGVIGDYREPELLRFGLTPLYLSHADIWDAVEILREVL FT DTRAWDRPQYRERAAVT" FT misc_feature complement(213772..213840) FT /note="ScanRegExp hit to PS00179, Aminoacyl-transfer RNA FT synthetases class-II signature 1." FT CDS 214661..215194 FT /transl_table=11 FT /gene="lrp" FT /gene_synonym="alsB" FT /gene_synonym="livR" FT /gene_synonym="ihb" FT /gene_synonym="oppI" FT /locus_tag="BP0554" FT /product="leucine-responsive regulatory protein" FT /note="Similar to Escherichia coli leucine-responsive FT regulatory protein Lrp or AlsB or LivR or Ihb or Oppi or FT b0889 SW:LRP_ECOLI (P19494) (163 aa) fasta scores: E(): FT 4.8e-16, 38.667% id in 150 aa, and to Rhizobium meliloti FT leucine-responsive regulatory protein Lrp or R01568 or FT Smc01223 SW:LRP_RHIME (P56901) (156 aa) fasta scores: E(): FT 1.6e-18, 43.243% id in 148 aa" FT /db_xref="GOA:Q7VRX6" FT /db_xref="InterPro:IPR019888" FT /db_xref="UniProtKB/TrEMBL:Q7VRX6" FT /protein_id="CAE44882.1" FT /translation="MHEYANQFEQHERKLPMQLDAIDRRILDILQTEGRLSNQDLADRV FT ALSPSACLRRVRALEDGGVIQGYRAVLDPRCLGLDFEAIVHVSLDQSQAGWHEAFVARL FT AGLEEVRQASIVTGSSNYVLQVRTRDLAAFSAFVVDKLNGIAGVREIHSHIVMRKVKDC FT GGVLPVGPAGLAGP" FT misc_feature 214766..214831 FT /note="Predicted helix-turn-helix motif with score 1211 FT (+3.31 SD) at aa 36-57, sequence LSNQDLADRVALSPSACLRRVR" FT misc_feature 214769..214849 FT /note="ScanRegExp hit to PS00519, Bacterial regulatory FT proteins, asnC family signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 214787..215098 FT /note="HMMPfam hit to PF01037, AsnC family" FT CDS 215295..216407 FT /transl_table=11 FT /gene="smf" FT /locus_tag="BP0555" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli Smf protein Smf or FT B3285/B3286 SW:SMF_ECOLI (P30852) (374 aa) fasta scores: FT E(): 1.5e-32, 43.974% id in 307 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa0021 pa0021 TR:Q9I7A6 FT (EMBL:AE004441) (362 aa) fasta scores: E(): 5.2e-50, FT 51.639% id in 366 aa" FT /db_xref="GOA:Q7VS86" FT /db_xref="InterPro:IPR003488" FT /db_xref="UniProtKB/TrEMBL:Q7VS86" FT /protein_id="CAE44883.1" FT /translation="MPLTHTRAELSAWLRLSQEPGVGPAAAYALLAALGMPEQIYAQGS FT ATLARHVPQDVARQLRAPLSDEAAALIEQTLQWAEQPGHHILTLADPAYPQQLLTIADP FT PILLYVNGDPACLRRPAMAVVGARNATPGGQDNARAFARHLAGQGWCIVSGLALGIDAA FT AHEGALLAGEQGAGTVAVMGTGIDRIYPAAHRDLAHRIVQHGALVSELPLGTGAQRHHF FT PRRNRLVAGLARGVLVVEAARQSGSLITARLAGESGREVFAIPGSIHSPLSRGCHALIR FT QGAKLVETVQDIADELGGAGPAASARTAPPARPAPPHPLLDALGFDPLHLDALQARTGM FT DAASLNAQLLELELDGRVARVEGGRFQRLR" FT misc_feature 215526..216158 FT /note="HMMPfam hit to PF02481, SMF family" FT CDS 216521..217429 FT /transl_table=11 FT /gene="hmgcL" FT /locus_tag="BP0556" FT /product="hydroxymethylglutaryl-CoA lyase" FT /EC_number="4.1.3.4" FT /note="Similar to Gallus gallus hydroxymethylglutaryl-CoA FT lyase HmgcL SW:HMGL_CHICK (P35915) (298 aa) fasta scores: FT E(): 1.8e-60, 54.452% id in 292 aa, and to Pseudomonas FT aeruginosa hydroxymethylglutaryl-CoA lyase Pa2011 TR:Q9I2A0 FT (EMBL:AE004627) (300 aa) fasta scores: E(): 1.5e-63, FT 58.863% id in 299 aa. Also similar to BP3695, 42.657% FT identity in 286 aa overlap" FT /db_xref="GOA:Q7VS85" FT /db_xref="InterPro:IPR000891" FT /db_xref="UniProtKB/TrEMBL:Q7VS85" FT /protein_id="CAE44884.1" FT /translation="MSQPSRVKIVEVSPRDGLQNEKEFIATDIKVELVDRLSAAGFQNV FT EAASFVSPKWVPQMADGAEVMARIARRPGTIYSVLTPNMKGLEGALAARADEIVIFGAA FT SEAFSQKNINCSIAESIARFEPVAAAARQAGVRVRGSISCALGCPYQGEVPVEAVVDVA FT RRFLALGCDEIDVADTIGVGTPRRVREVMDAVTRVVDPARVSGHFHDTYGQALANILAA FT LETGIAIFHASASGLGGCPYAKGATGNVATEDVLYMLRGLDIETGIDFDAVVDIGQWIS FT GHLQRKGSSRAGNAVAAKRAA" FT misc_feature 216557..217384 FT /note="HMMPfam hit to PF00682, HMGL-like" FT CDS 217572..218048 FT /transl_table=11 FT /locus_tag="BP0557" FT /product="putative membrane protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7VS84" FT /protein_id="CAE44885.1" FT /translation="MNNLFAAPTPEEHAALLQEIGPLPLSGQAWPDWVRILAWIVLAVI FT GVQIVTTAIGLPPGQVNPILAGTIILCFLGLALVSWHMQISVTRIDESGLRQTWITRRE FT VAWQDIQFAKFVPLLFSKRLVVFTRHGRPIVFQGGTRDLQVAFAKISLLYRRKR" FT misc_feature join(217668..217736,217746..217814) FT /note="2 probable transmembrane helices predicted for FT BP0557 by TMHMM2.0 at aa 73-95 and 99-121" FT CDS complement(218083..219099) FT /transl_table=11 FT /locus_tag="BP0558" FT /product="amino acid-binding periplasmic protein" FT /note="Similar to Rhizobium leguminosarum general L-amino FT acid-binding periplasmic protein AapJ precursor FT SW:AAPJ_RHILV (Q52812) (341 aa) fasta scores: E(): 3.3e-75, FT 56.932% id in 339 aa, and to Vibrio cholerae amino acid ABC FT transporter, periplasmic amino acid-binding protein vc1362 FT TR:Q9KS97 (EMBL:AE004216) (342 aa) fasta scores: E(): FT 5.2e-79, 58.333% id in 336 aa" FT /db_xref="GOA:Q7VS83" FT /db_xref="InterPro:IPR018087" FT /db_xref="UniProtKB/TrEMBL:Q7VS83" FT /protein_id="CAE44886.1" FT /translation="MKIAQGLAAAALLAGMVAGAQGATLDVVKKRGTVVCGTTTGFAGF FT SAPDKQGTWRGLDVDLCRAVAAAVFGDASKIKVVPLNSQQRFTALQSGEVDVLTRNTTV FT TQQRDTALGIIHAGINFYDGQGFMVPKSLGVKSAKELNGATICLQTGTSNENTLADWAR FT ANQVSYKPVVIETFNEVVNAFASGRCDVFSTDASGLASIRISRLEKPDDYVVLPEIISK FT EPLGPFVRQGDDAWLNIVRWSLSAMIEAEEYGVTTANVDEQLKSENPNVRRILGVTPGA FT GANLGLDEKWAYNIIKQVGNYGESFERNVGQGSPLKIQRGLNAQWTQGGLMYALPIR" FT misc_feature complement(218164..219000) FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3" FT misc_feature complement(218557..218586) FT /note="ScanRegExp hit to PS00659, Glycosyl hydrolases FT family 5 signature." FT misc_feature complement(218893..218934) FT /note="ScanRegExp hit to PS01039, Bacterial extracellular FT solute-binding proteins, family 3 signature. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature complement(219034..219099) FT /note="Signal peptide predicted for BP0558 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.790 between residues 22 and 23" FT CDS complement(219213..220454) FT /transl_table=11 FT /locus_tag="BP0559" FT /product="probable aminotransferase" FT /note="Similar to Thermococcus profundus multiple substrate FT aminotransferase TR:Q9V2W5 (EMBL:AB027131) (417 aa) fasta FT scores: E(): 2.9e-42, 36.693% id in 387 aa, and to FT Streptomyces coelicolor putative aminotransferase Sce68.04C FT TR:Q9WX27 (EMBL:AL079345) (404 aa) fasta scores: E(): FT 8.4e-59, 48.429% id in 382 aa" FT /db_xref="GOA:Q7VS82" FT /db_xref="InterPro:IPR015421" FT /db_xref="UniProtKB/TrEMBL:Q7VS82" FT /protein_id="CAE44887.1" FT /translation="MPLAAPDYAFAAPFQHPPASPIRSLMPYAMRPGTISLAGGYPAQE FT LFDVEGLAAASRQVLERLGACLQYSNIDGQASLRHELARLSAARGLHCDADTELAVTGG FT SQQALALLARVMLQPGDAAVIETPAFPNSVQALRYTGAAVHTVPSGPSGIDLDALDALA FT ARVRPKMVCVVASFSNPCGATISRERRLRLLELAVRHRFLIVEDDPYGELRFAGETVPP FT IAALAEGQARHWAVYISSMSKTMAPALRIGWVVAPAEVRRRVVGAKAADDMACSAWTQE FT MVAQYLADGRYAQHVPRIRAAYGARCDAMAAALQRELGDRVVFRKPEGGMFFWARLNGA FT IDATRLLPYAIEHEVVYVPGKAFYADPAQADPHALRMSFATMNETQIAQGIVRLGRALQ FT ACEANAPVSISLAA" FT misc_feature complement(219255..220436) FT /note="HMMPfam hit to PF00155, Aminotransferase class I and FT II" FT CDS join(220716..221060,221062..221430) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0560" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 115. The sequence has been checked FT and believed to be correct. Similar to Xylella fastidiosa FT hypothetical protein Xf1717 TR:Q9PCR1 (EMBL:AE003995) (266 FT aa) fasta scores: E(): 4.8e-38, 53.247% id in 231 aa, and FT to Aquifex aeolicus hypothetical protein Aq_274 aq_274 FT SW:Y274_AQUAE (O66631) (228 aa) fasta scores: E(): 2.4e-28, FT 46.875% id in 224 aa. Also similar to BP1320, 57.576% FT identity (58.333% ungapped) in 231 aa overlap." FT /db_xref="PSEUDO:CAE44888.1" FT misc_feature join(220740..221060,221062..221415) FT /note="HMMPfam hit to PF01168, Uncharacterized protein FT family UPF0001" FT variation 221061..221063 FT /note="CAT in pertussis; C(-)T in parapertussis and FT bronchiseptica" FT CDS 221588..222553 FT /transl_table=11 FT /locus_tag="BP0561" FT /product="putative exported protein" FT /note="Similar to Comamonas testosteroni OrfJ protein FT TR:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): FT 8.8e-35, 36.957% id in 322 aa, and to Rhizobium meliloti FT conserved hypothetical protein Sma1927 TR:AAK65716 FT (EMBL:AE007292) (330 aa) fasta scores: E(): 8.3e-40, FT 38.907% id in 311 aa" FT /db_xref="GOA:Q7VS81" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7VS81" FT /protein_id="CAE44889.1" FT /translation="MHKHAKRLLTLAALTFAAGAAAQSWPSQPLRWIVPYPAGGGTDVV FT ARTVAGSLEKPLGQTIVVENRPGAATIIGATAIAQADPAGYVVGTADSGTLAFNPSLYA FT KLSYDPAKFTYIGGIARFPLMLAVNVNSPYKSVEDVLQAARKEPAKLTAASAGAGSPHH FT LALELFKQRANVDVLHVPYKGAAPAIQDLLGGQVDMMFIDLAAGLPNIKAGKLRVLGTA FT TPERLAVLPDAPTMAEQGVADFTAYAWQGLVGPAGMPEAAVKKLGGELEQSLKSPAVSQ FT KLLDMGVMPMPMTPQDFKAYAEKERAAWADVVKKANIRLE" FT misc_feature 221588..221653 FT /note="Signal peptide predicted for BP0561 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.848 between residues 22 and 23" FT CDS complement(222600..223091) FT /transl_table=11 FT /locus_tag="BP0562" FT /product="putative exported protein" FT /note="Similar to Rhizobium loti Mll3326 protein TR:Q98GH4 FT (EMBL:AP003001) (179 aa) fasta scores: E(): 6.4e-18, FT 41.830% id in 153 aa, and to Neisseria meningitidis FT hypothetical protein Nmb1557 TR:Q9JYJ5 (EMBL:AE002506) (157 FT aa) fasta scores: E(): 1e-15, 40.541% id in 148 aa" FT /db_xref="InterPro:IPR007410" FT /db_xref="UniProtKB/TrEMBL:Q7VS80" FT /protein_id="CAE44890.1" FT /translation="MNIRKWGVGAVLGLSVATTAWAADFKVGQVEVDDLWVRASAPGQA FT NGAGYMEIENDAKAADRLVSVSSPAAERVELHNVVTENGVAQMRQVDGVAVPADGKARL FT APGGYHVMFLKLKAPFAEGGEVPATLKFEQAGEVAVKFKVKPLGHNPGMAGHDHGHMKH FT " FT misc_feature complement(223026..223091) FT /note="Signal peptide predicted for BP0562 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 22 and 23" FT CDS complement(223187..224086) FT /transl_table=11 FT /locus_tag="BP0563" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Streptomyces coelicolor putative FT LysR-family transcriptional regulator Sc5f8.17C TR:Q9K4K7 FT (EMBL:AL357613) (300 aa) fasta scores: E(): 2.8e-46, FT 46.644% id in 298 aa, and to Agrobacterium tumefaciens FT Agr_c_1691p TR:AAK86733 (EMBL:AE008023) (319 aa) fasta FT scores: E(): 5.4e-44, 43.434% id in 297 aa" FT /db_xref="GOA:Q7VS79" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7VS79" FT /protein_id="CAE44891.1" FT /translation="MKLDHGNLRALAAVVREGSFERAAAALSVTPSAVSQRVKALEDRM FT GRLLVQRTVPARATDDGQVLVQLAEQAALLEHDALNRLGVAEDEVPHASIPVAVNHDSL FT ETWFVDAAVRFAARSRATLDLQSEDQDHTAALLRKGAVLGAVTTLADPVQGCRIHALGS FT MRYVACCTPAFHQRYFAQGVSARTLASAPVLVFNRKDALQARYAHRIIGRAAWEPPVWW FT LPSSRAFVQATLGGLGWTMNPLPLVQAELDAGQLVPLRARAWEDVPLYWQHWRVNSQAM FT EALTDAVLAAARALVRRR" FT misc_feature complement(223652..224065) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(223940..224032) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT misc_feature complement(223970..224035) FT /note="Predicted helix-turn-helix motif with score 1673 FT (+4.89 SD) at aa 18-39, sequence GSFERAAAALSVTPSAVSQRVK" FT CDS 224216..224851 FT /transl_table=11 FT /locus_tag="BP0564" FT /product="probable transporter" FT /note="Similar to Streptomyces coelicolor putative membrane FT transport protein Sc5f8.18 TR:Q9K4K6 (EMBL:AL357613) (204 FT aa) fasta scores: E(): 4.7e-24, 42.714% id in 199 aa, and FT to Pseudomonas aeruginosa probable transporter Pa4365 FT TR:Q9HW36 (EMBL:AE004852) (200 aa) fasta scores: E(): FT 2.7e-22, 41.500% id in 200 aa" FT /db_xref="GOA:Q7VS78" FT /db_xref="InterPro:IPR001123" FT /db_xref="UniProtKB/TrEMBL:Q7VS78" FT /protein_id="CAE44892.1" FT /translation="MFTLSVPAYVTAWASGAATGLGLFAVVGAQSAFILRQGLMRAHLL FT SILAVCALIDAVFIFGSVWGLQTLTGWFPWLIQAILWFGVAFLAWYALQSARRALRSDG FT GLEVARQAIPSRGAALLGAIGFSLLNPHFWLDMMVVGSLAHGFADARLAFAAGALTASV FT VWLAVLGVGSRLFAPLFSSPRAWRVLDGLIAAVMALLAARLALGGLAG" FT misc_feature 224216..224302 FT /note="Signal peptide predicted for BP0564 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.835) with cleavage site FT probability 0.262 between residues 29 and 30" FT misc_feature join(224243..224311,224345..224413,224426..224494, FT 224552..224620,224663..224731,224768..224836) FT /note="6 probable transmembrane helices predicted for FT BP0564 by TMHMM2.0 at aa 10-32, 44-66, 71-93, 113-135, FT 150-172 and 185-207" FT misc_feature 224435..224755 FT /note="HMMPfam hit to PF01810, LysE type translocator" FT CDS complement(224848..225798) FT /transl_table=11 FT /locus_tag="BP0565" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q84CT8" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q84CT8" FT /protein_id="CAE44893.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT repeat_region complement(224848..225900) FT misc_feature complement(224884..225417) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(225475..225540) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(225869..225900) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(225933..226781) FT /transl_table=11 FT /locus_tag="BP0566" FT /product="putative dioxygenase" FT /note="Similar to Rhizobium meliloti hypothetical/unknown FT protein Smc01026 TR:CAC46020 (EMBL:AL591787) (296 aa) fasta FT scores: E(): 0.25, 27.090% id in 299 aa, and to FT Agrobacterium tumefaciens Agr_c_2627p TR:AAK87216 FT (EMBL:AE008068) (292 aa) fasta scores: E(): 0.21, 27.852% FT id in 298 aa" FT /db_xref="GOA:Q7VS77" FT /db_xref="UniProtKB/TrEMBL:Q7VS77" FT /protein_id="CAE44894.1" FT /translation="MTARVGRVDHPVVAVHDLDRTSQQYRKLGFVVPPSGKHQEWGTEN FT LCIMFPGDYLEIRGIGDPNKFLAGVDKFLAKGEGLYSVAFNAASAQESYQAGLAAGLEI FT EPPRHLNRKLVLEDRTLDLHFETVMLGHDLYPGLTHANLCQHLTADTLRQPGWTDHPNG FT VVAFGRLVGMVSDFDAAAAAYTRLIGAENVTRGDDHILLDFGAGADIELIGPAEAQRRG FT DAQPQLGDAYLASATLLVKDAAATAALFEANGVRFTRQPGGELKVDPADACGAHLYFKQ FT A" FT misc_feature complement(225936..226265) FT /note="HMMPfam hit to PF00903, Glyoxalase/Bleomycin FT resistance protein/Dioxygenase superfamily" FT CDS 226915..227691 FT /transl_table=11 FT /locus_tag="BP0567" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3505 TR:Q9HYA4 (EMBL:AE004771) (267 aa) fasta FT scores: E(): 7.8e-19, 34.409% id in 279 aa, and to FT Methanothermobacter thermautotrophicus conserved protein FT Mth973 TR:O27054 (EMBL:AE000871) (257 aa) fasta scores: FT E(): 2.9e-18, 37.647% id in 255 aa. Also similar to BP1922, FT 41.036% identity in 251 aa overlap." FT /db_xref="GOA:Q7VS76" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/Swiss-Prot:Q7VS76" FT /protein_id="CAE44895.1" FT /translation="MNTPLRVGIVGCGVLANAMAGHLARQPRPVEIVGCLVRDPGRARG FT ALPCHGSWEALLAQRPDVVVECAGQAALAQYAQAILAAGVDLVPASVGALADDALRGAL FT LEAAAAAGARIRIPSGAMVGIDGLAAARHVGVAEVLYRGTMPPVALQRYVSGPLPERGL FT AFAGSAREAVARFPKNVNLTGTIALAGIGFDRTRVEMLIDPDATANVHELLARGEFGDF FT HARVSGLRISESSPSSRIVAGSLAQAALGSGFLALS" FT misc_feature 226927..227661 FT /note="HMMPfam hit to PF01958, Domain of unknown function FT DUF108" FT CDS complement(227737..228366) FT /transl_table=11 FT /locus_tag="BP0568" FT /product="putative amino acid efflux protein" FT /note="Similar to Escherichia coli homoserine/homoserine FT lactone efflux protein RhtB or B3824 SW:RHTB_ECOLI (P27847) FT (206 aa) fasta scores: E(): 1.6e-14, 31.100% id in 209 aa, FT and to Rhizobium meliloti putative amino acid efflux FT transmembrane protein Smc02981 TR:CAC47452 (EMBL:AL591792) FT (211 aa) fasta scores: E(): 1.3e-40, 58.852% id in 209 aa" FT /db_xref="GOA:Q7VS75" FT /db_xref="InterPro:IPR001123" FT /db_xref="UniProtKB/TrEMBL:Q7VS75" FT /protein_id="CAE44896.1" FT /translation="MTLATLALFVLASGLIIVTPGPTVLLALSNGSRHGVRRACWGMAG FT AVLADLVLVAAVAGGLGMLLAASEPAFQALKWIGAGYLAYLGWRLLRSDAALVLPAPAA FT GGGDSGAGALFSRSFLVALTNPKALLFMSAFLPQFIDPAAALAPQYGALALVLAVLNLA FT AMLGYAALGARLVRALRTGGLRWINRLCGGMLVVLAGTVALYRRAG" FT misc_feature complement(join(227752..227808,227848..227913, FT 227959..228024,228169..228234,228280..228345)) FT /note="5 probable transmembrane helices predicted for FT BP0568 by TMHMM2.0 at aa 7-29, 44-66, 114-136, 151-173 and FT 186-205" FT misc_feature complement(227839..228162) FT /note="HMMPfam hit to PF01810, LysE type translocator" FT misc_feature complement(228286..228366) FT /note="Signal peptide predicted for BP0568 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.963) with cleavage site FT probability 0.729 between residues 27 and 28" FT CDS 228474..229808 FT /transl_table=11 FT /locus_tag="BP0569" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli Sun protein Sun or Fmu FT or Fmv or Rsmb or B3289 SW:SUN_ECOLI (P36929) (429 aa) FT fasta scores: E(): 7.1e-43, 36.406% id in 434 aa, and to FT Neisseria meningitidis Sun homolog Nma0162 TR:Q9JWZ0 FT (EMBL:AL162752) (419 aa) fasta scores: E(): 3.8e-54, FT 44.651% id in 430 aa" FT /db_xref="GOA:Q7VS74" FT /db_xref="InterPro:IPR018314" FT /db_xref="UniProtKB/TrEMBL:Q7VS74" FT /protein_id="CAE44897.1" FT /translation="MPSSVDSSVLAPPLSAVLLGAAAAVQAVRKGRSLTDALAETPPAL FT RPAVQAISFHAMRQLGWADAVAETLVRRSPGPLFDALLRVALSLLRPAPGAAAQPGAPQ FT YAPHTVVDQAVTAAAGQRKLAAYKGLLNASLRRFLREREALQDSVAERPAARWNHPRWW FT VELLERAYPDQWRGILAGANVPAPLTLRVNRRRATVEQARQALAQAGVAAAPVGDAGLV FT LAEPRPVPQLPGYGAGWWSVQDAGAQLAAPLLAPADGMRVLDACAAPGGKTAHLLELAD FT IDLLALDADVQRLERVDQNLERLGLRTPRVRLAAADASDLDAWWDGRPFDAVLADVPCT FT ASGIVRRHPDIRWLRRAKDVPRTAALQARIADALWRTVAPGGRLLYVTCSVFPAEGREQ FT AEAFARRHADAAPLDAPGQLLPVAIDATPQAQHDGFFYALFAKRT" FT misc_feature 229005..229796 FT /note="HMMPfam hit to PF01189, NOL1/NOP2/sun family" FT misc_feature 229461..229496 FT /note="ScanRegExp hit to PS01153, NOL1/NOP2/sun family FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 229827..230438 FT /transl_table=11 FT /locus_tag="BP0570" FT /product="putative exported protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nma0161 TR:Q9JWZ1 (EMBL:AL162752) (199 aa) fasta FT scores: E(): 3.5e-12, 31.088% id in 193 aa, and to FT Neisseria meningitidis hypothetical protein Nmb0113 FT TR:Q9K1K4 (EMBL:AE002370) (180 aa) fasta scores: E(): FT 5.1e-11, 32.278% id in 158 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VS73" FT /protein_id="CAE44898.1" FT /translation="MLLRICRMSMILRLFVALLLVFCSFSPITSGLAHAADPHVQRIEP FT LVRDGKLELSADVHFELNDQLRDAAQRGVPLYFTADLQITRSRWWWFDHTLVDKSITWR FT IAYNALTRQWRAGAGELSLPVASLDDAMDLVRHIRNWQVADASEFDPGVRYGGQLRVRL FT DTSQLARPFQVNALNSSSWSPATPWAEFSFALAEPARDPS" FT misc_feature 229827..229931 FT /note="Signal peptide predicted for BP0570 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 35 and 36" FT CDS 230435..232744 FT /transl_table=11 FT /locus_tag="BP0571" FT /product="putative two-component sensor kinase" FT /note="Similar to Azorhizobium caulinodans nitrogen FT regulation protein NtrY SW:NTRY_AZOCA (Q04850) (771 aa) FT fasta scores: E(): 8.8e-14, 29.107% id in 773 aa, and to FT Neisseria meningitidis nitrogen regulation protein NtrY, FT putative Nmb0114 TR:Q9K1K3 (EMBL:AE002370) (706 aa) fasta FT scores: E(): 6.2e-41, 37.748% id in 755 aa" FT /db_xref="GOA:Q7VS72" FT /db_xref="HSSP:1BXD" FT /db_xref="InterPro:IPR003660" FT /db_xref="UniProtKB/TrEMBL:Q7VS72" FT /protein_id="CAE44899.1" FT /translation="MRMFLRLALVVGGVSGLALLGLLAWSTGNASRFARYYDTLLILNG FT IFAFALFVWVVALTVRLARQIRRRQFGARLTARFALAFALIGVVPGALIYTLSVQFMSR FT SIESWFNVRVDSALESGLNLGRAALDSQLADMDVRARAMAAELNNMSDNDIPLALTRLR FT EANGAQEATVFTGSGRILAFSTNTYGQLLPPSLPATLLNQLRLARGYSAAEADDPAIPG FT AEGGLHLRVVIPLSAPARFDGILGGSAEPRWLQLMHAVPDQIAHNANRVQQGFRDYQEL FT ALSRLGLRKLYGITLTLALLLAVFAAIAVALSLSKRLVRPLLRLAGGTQAVGVGDFRPL FT PEPPERDEVGQLTRSFNAMTRQLEEARQMVESNRRQLERSNVYLESVLSNLSSGVIAFD FT EGFRVTTVNQGAQTILQADLRSVIGRPLETVDGMLEFAQVVRQAFAAHAAVGSERLHWQ FT QQFEITPGLDETGGQPVTLLARGTHLRVDGRGNGYLVVFDDITEVISANRTVAWGEVAR FT RLAHEIKNPLTPIQLSAERLAMKLADRLQPADAQMLIRSTNTIVNQVGSLKQMVDDFRE FT YARTPPAVMQRIDLNALVADVLSLYGWDPGDGGGRGAARVLNLDVELAPGLPDIEGDPT FT QLRQVIHNLLSNARDAVAEQGGEGRVKVTTQIVQSEQPDGGQQRAVRFTVADTGPGFPP FT QVMQRAFEPYVTTKAHGTGLGLAIVRKIIEEHGGRIDLANRKEGGARISILLTRLALPS FT DTMDATAQKKDNAATQ" FT misc_feature 230435..230524 FT /note="Signal peptide predicted for BP0571 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.360 between residues 30 and 31" FT misc_feature join(230453..230512,230540..230608,230669..230737, FT 231308..231376) FT /note="4 probable transmembrane helices predicted for FT BP0571 by TMHMM2.0 at aa 7-26, 36-58, 79-101 and 292-314" FT misc_feature 231320..231529 FT /note="HMMPfam hit to PF00672, HAMP domain" FT misc_feature 231965..232183 FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain" FT misc_feature 232328..232684 FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, phytochrome-like ATPase" FT CDS 232755..233444 FT /transl_table=11 FT /locus_tag="BP0572" FT /product="putative two-component response regulator" FT /note="Similar to Salmonella typhimurium transcriptional FT regulatory protein HydG SW:HYDG_SALTY (P25852) (441 aa) FT fasta scores: E(): 7.1e-09, 35.849% id in 159 aa, and to FT Neisseria meningitidis putative two-component FT trancriptional regulator Nma0159 TR:Q9JWZ3 (EMBL:AL162752) FT (425 aa) fasta scores: E(): 1.2e-25, 53.939% id in 165 aa" FT /db_xref="GOA:Q7VS71" FT /db_xref="HSSP:1KRW" FT /db_xref="InterPro:IPR001789" FT /db_xref="UniProtKB/TrEMBL:Q7VS71" FT /protein_id="CAE44900.1" FT /translation="MARILVVDDEVGIRELLSEILYDEGHTVELAENAAQARAARLRMR FT PDLVLLDIWMPDTDGVSLLKEWASQGLLDMPVIMMSGHATIDTAVEATRIGAMDFLEKP FT ITLQRLLKTIEAGLARVRAPRAAPPLAHAAAAPVAVALEDELDPPQPFQAPVEAPAASN FT GQLGSISLDQPLREARDEFERIYFEYHLVRENHSMTRVSERTGLERTHLYRKLKQLGIE FT SARKRGT" FT misc_feature 232758..233096 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain" FT misc_feature 233340..233405 FT /note="Predicted helix-turn-helix motif with score 1397 FT (+3.94 SD) at aa 196-217, sequence HSMTRVSERTGLERTHLYRKLK" FT CDS 233441..234820 FT /transl_table=11 FT /gene="trkA" FT /locus_tag="BP0573" FT /product="Trk system potassium uptake protein" FT /note="Similar to Escherichia coli Trk system potassium FT uptake protein TrkA or B3290 or Z4660 or Ecs4155 FT SW:TRKA_ECOLI (P23868) (458 aa) fasta scores: E(): 6.9e-78, FT 48.478% id in 460 aa, and to Salmonella typhimurium Trk FT system potassium uptake protein TrkA or SapG SW:TRKA_SALTY FT (P39445) (458 aa) fasta scores: E(): 1.8e-78, 48.913% id in FT 460 aa" FT /db_xref="GOA:Q7VS70" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7VS70" FT /protein_id="CAE44901.1" FT /translation="MKILIMGAGRVGTSVAENLVSEQNDITVIDTDVGQLRYLQDRFDL FT RVVQGDGIQVSVLESAGADDTDLFIACAASDAANLVACKIAREVFNVPRRIARIRMPEF FT ADHPELMSDEGFAIDALISPERSVTTYLHSLIEFPEALQVVEFAGGRVSVITVRVGHGS FT PMAHHPVDELREVWPDVTARIVDVLRDGRPLHAGTGTVVAPGDEVVLAVDTRHARRAVR FT QLREAEKTVHRVMIAGGGNIGLRLARQLAEEGYSVRIIEHDAKRCEYLAAELPDNVLVL FT HGNGTDEALLERENIEDMDTWLALTSDDEDNIMSSLLAKRLGARKVIALINRQAYGELM FT QGSHIDVAVSPSQATMSELLRHVRRGDVVAVHRLRQGVAEALEAVAHGDRSNSRVVGRA FT VGKIGLPKGASIGVLVRGDEIIVPDADTEIQSDDHVIVFVPSRRQMPRVEKLFQVSASF FT F" FT misc_feature 233444..233812 FT /note="HMMPfam hit to PF02254, KTN NAD-binding domain" FT misc_feature 233855..234124 FT /note="HMMPfam hit to PF02080, Potassium channel" FT misc_feature 234137..234493 FT /note="HMMPfam hit to PF02254, KTN NAD-binding domain" FT misc_feature 234536..234808 FT /note="HMMPfam hit to PF02080, Potassium channel" FT CDS 234869..236338 FT /transl_table=11 FT /gene="trkH" FT /locus_tag="BP0574" FT /product="Trk system potassium uptake protein" FT /note="Similar to Escherichia coli Trk system potassium FT uptake protein TrkH or B3849 or Z5371 or Ecs4777 FT SW:TRKH_ECOLI (P21166) (483 aa) fasta scores: E(): 4e-74, FT 42.798% id in 486 aa, and to Salmonella typhimurium Trk FT system potassium uptake protein TrkH or Stmd1.3 FT SW:TRKH_SALTY (Q9L6L2) (483 aa) fasta scores: E(): 2e-74, FT 43.004% id in 486 aa" FT /db_xref="GOA:Q7VS69" FT /db_xref="InterPro:IPR003445" FT /db_xref="UniProtKB/TrEMBL:Q7VS69" FT /protein_id="CAE44902.1" FT /translation="MKRLLATFYVLGLTMVVFALTMVIPLAVAYIGQDAGFTAFLEGFL FT LALGIGAGTWLATRRGRSELHARDGFLLVSTVWAALPALAAIPLLLYYDDVGIPLSFTD FT AYFEAMSGLTTTGATVLSGLDALPASINLWRATLIWIGGMGILVLAVAILPLLGVGGHQ FT VVRAETPGPMKDERLTPRIASTAKALYAVYFGFSMVCLLAYRAVGLSWFDAWCHMATTM FT GLGGFSTYDDGFAHFDSLSVELVAIVFMTISGINFATHFNALRQRNWRAYVVCPQTIPY FT LTVMLGAGLVISVFLYIKGVYGDPWEALRYGMFNTISVATTTGYANVDYASWPLFAPLT FT MLLLSAFVTSAGSTGGGIKMIRIILLVKQARNELVTMLHPHAVSPVRIGSRVVDQRVMA FT SVLAFMLVYGLSVGVLSSLLLLSGLDLITAFSAVMAMINNTGPGLGPVGPMGNFSVLND FT FQTWVCTFAMLIGRLELLTVLVLFTPLFWRK" FT misc_feature 234869..234955 FT /note="Signal peptide predicted for BP0574 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.611 between residues 29 and 30" FT misc_feature join(234893..234961,234971..235039,235076..235144, FT 235277..235345,235436..235504,235583..235651, FT 235709..235777,235874..235942,236063..236131, FT 236261..236329) FT /note="10 probable transmembrane helices predicted for FT BP0574 by TMHMM2.0 at aa 9-31, 35-57, 70-92, 137-159, FT 190-212, 239-261, 281-303, 336-358, 399-421 and 465-487" FT misc_feature 235058..236329 FT /note="HMMPfam hit to PF02386, Sodium transport protein" FT CDS 236484..236951 FT /transl_table=11 FT /locus_tag="BP0575" FT /product="probable MarR-family transcriptional regulator" FT /note="Similar to Escherichia coli transcriptional FT regulator protein SlyA TR:Q9F8R8 (EMBL:AF242208) (135 aa) FT fasta scores: E(): 2.1e-06, 29.630% id in 135 aa, and to FT Streptomyces coelicolor putative transcriptional regulator FT Sc4c6.14 TR:Q9XAM6 (EMBL:AL079355) (154 aa) fasta scores: FT E(): 8.9e-15, 40.000% id in 135 aa" FT /db_xref="GOA:Q7VS68" FT /db_xref="InterPro:IPR000835" FT /db_xref="UniProtKB/TrEMBL:Q7VS68" FT /protein_id="CAE44903.1" FT /translation="MFDPAKQVLWSRPGYLVRRLNQIHYALFYEECKTQNVTPVQYGVL FT TALSLSPWLDQTAIGMELGLDRTTTADVIKRLQERGLVERRVNPNDKRSRQAVITQEGL FT RIMGLLQGGMARAQQRLLEPLSPCNREIFMKLLSTLVDANNQYSRTALKAM" FT misc_feature 236592..236903 FT /note="HMMPfam hit to PF01047, MarR family" FT CDS complement(236959..237954) FT /transl_table=11 FT /locus_tag="BP0576" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4618 TR:Q9HVH3 (EMBL:AE004876) (323 aa) fasta FT scores: E(): 7.3e-44, 42.271% id in 317 aa. Also similar to FT BP2128, 50.893% identity (53.271% ungapped) in 336 aa FT overlap." FT /db_xref="InterPro:IPR003777" FT /db_xref="UniProtKB/TrEMBL:Q7VS67" FT /protein_id="CAE44904.1" FT /translation="MNALDLDVLQHARDWLASGRRVHLVTVVQTWGSAPRQAGAMLAVR FT DDGQVVGSVSGGCIEDDLIARARAGTLPERAERLTYGVTRDEATRFGLPCGGTLRLVAE FT PLAPRDAWLDEVLQAIAEHRLVRRTIDLHTGAAALEAAAPAEGPDFDGRMFRAVYGPHW FT RLLIIGANQTAQVLADIAATLDFQVIVCDPREEFHAAWHAPHATLVATMPDDIVLEIGT FT DERTAIVALTHDPKLDDMVLLEALKSRAFYVGALGSRANQEKRRERLRLFDLGDEDIAR FT LRGPVGLPIASRTPAEIAVAVAAELVWVRNTLGDREPSGAPLPAALAPAR" FT misc_feature complement(237007..237918) FT /note="HMMPfam hit to PF02625, Uncharacterized BCR, FT COG1975" FT CDS 238088..238687 FT /transl_table=11 FT /locus_tag="BP0577" FT /product="conserved hypothetical protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc0019 TR:Q9AC47 (EMBL:AE005676) (210 aa) fasta FT scores: E(): 7e-13, 41.176% id in 204 aa, and to FT Agrobacterium tumefaciens Agr_pat_742p TR:AAK90876 FT (EMBL:AE007918) (230 aa) fasta scores: E(): 1.5e-09, FT 37.056% id in 197 aa" FT /db_xref="UniProtKB/TrEMBL:Q7VS66" FT /protein_id="CAE44905.1" FT /translation="MGILLAGGQGRRFAAASGGQDKLLARLADGTAVAVRAAAALREAT FT DAVVAMVRPESAALAALLRGQGCHVLESEQASEGMGASLAAAARFLLAGPVPNMPQRAD FT VCLVALADMPWVRRDTLSAVRAAACADGITVPVHQGRRGHPVAFGRSLWGELAALRGDV FT GARELLRRHRVAAVAVDDPGVAADVDTPGDLAGDRA" FT CDS 239011..239973 FT /transl_table=11 FT /locus_tag="BP0578" FT /product="conserved hypothetical protein" FT /note="Similar to Synechocystis sp hypothetical 38.3 kDa FT protein Slr0619 TR:Q55861 (EMBL:D64004) (348 aa) fasta FT scores: E(): 1e-44, 47.569% id in 288 aa, and to FT Agrobacterium tumefaciens Agr_c_4595p TR:AAK88260 FT (EMBL:AE008165) (327 aa) fasta scores: E(): 3.2e-35, FT 45.260% id in 327 aa" FT /db_xref="GOA:Q7VS65" FT /db_xref="InterPro:IPR006992" FT /db_xref="UniProtKB/TrEMBL:Q7VS65" FT /protein_id="CAE44906.1" FT /translation="MTKVRKIAFEEHFTAVGFGDYSKAFVQHLDPGFAAELGARLTDFG FT AGRLAEMDAAGIDYAILSQTGPGVQGEPDAAVALRRARENNDFLAERIARHPDRFGGFA FT TLPMHDPKTAAAELTRAVRELGFKGSLVNGHTNGVYYDDPAYDAFWEQMQELDVPLYLH FT PFDAYVLPHAYKGHPELAGATWGWGVETGTHALRLLFGGVFDRFPKLKIILGHMGEGLP FT FQRWRFDSRFAAYPYGVKLQRAPSEYIGSNILITTSGVCSHPTLVGAIAEMGAEAVMFS FT IDYPYESTALAVEFIESAPLDAATRDLVCYGNAARLFKL" FT CDS 239999..240751 FT /transl_table=11 FT /gene="maiA" FT /locus_tag="BP0579" FT /product="maleate cis-trans isomerase" FT /note="Similar to Serratia marcescens maleate cis-trans FT isomerase MaiA TR:Q9KWI0 (EMBL:AB035810) (250 aa) fasta FT scores: E(): 3.6e-69, 78.800% id in 250 aa, and to Bacillus FT stearothermophilus maleate cis-trans isomerase MaiA FT TR:Q9WX57 (EMBL:AB015134) (251 aa) fasta scores: E(): FT 4.3e-57, 65.339% id in 251 aa. Identical to BP1955, 99.600% FT identity (99.600% ungapped) in 250 aa overlap." FT /db_xref="GOA:Q7TTH1" FT /db_xref="InterPro:IPR015942" FT /db_xref="UniProtKB/TrEMBL:Q7TTH1" FT /protein_id="CAE44907.1" FT /translation="MQKTYRIGQIVPSSNTTMETEIPAMLLARQQIRGERFTFHSSRMR FT MKKVVKEELAAMDAESDRCAVELSDARVDVLGYACLVAIMAMGRGYHRQSQARLTAHTA FT ANGGEAPVITSAGALVDALKVMGARKIAVVAPYMKPLTELVVDYIGNEGYEVVDYRALE FT IADNLEVGRHDAGRLPEIVAGLDYREADVIVLSACVQMPSLGAIAKVEAQTGKPVVTAA FT VATTYAMLKALGLEAVVPGAGALLSGAY" FT CDS join(240771..241421,241423..241590) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0580" FT /product="probable hydrolase (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 217. The sequence has been checked FT and believed to be correct. Similar to Pseudomonas FT aeruginosa esterase Pa2949 TR:Q9KJG6 (EMBL:AF170828) (315 FT aa) fasta scores: E(): 6.2e-07, 27.437% id in 277 aa, and FT to Coccidioides immitis hypothetical alpha/beta hydrolase FT TR:Q9P418 (EMBL:AF284472) (201 aa) fasta scores: E(): FT 2.7e-41, 56.122% id in 196 aa. Identical to BP1956, 99.634% FT identity (100.000% ungapped) in 273 aa overlap." FT /db_xref="PSEUDO:CAE44908.1" FT misc_feature join(240936..241424,241423..241566) FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold" FT variation 241422..241423 FT /note="G in pertussis; G(AG) in parapertussis and FT bronchiseptica" FT CDS 241618..242649 FT /transl_table=11 FT /locus_tag="BP0581" FT /product="conserved hypothetical protein" FT /note="Similar to Pyrococcus horikoshii hypothetical 34.8 FT kDa protein Ph1048 TR:O58749 (EMBL:AP000004) (320 aa) fasta FT scores: E(): 1.5e-06, 25.429% id in 350 aa. Identical to FT BP1957, 100.000% identity (100.000% ungapped) in 343 aa FT overlap." FT /db_xref="UniProtKB/TrEMBL:Q7TTJ1" FT /protein_id="CAE44909.1" FT /translation="MPVSDYEMIRAWTQVLRLSRLQAGQTVTVLTSAATHPQTLGTALV FT AAQSLGAVVNRLDLPPVNGEKALSRDALAYLGTTPLTGNKAAIAMLKASDLVLDLMTLL FT FSPEQHEILQGGTRILLAVEPPEVLARLVPTEGDRQRVKAAAARIAGAREMTVESEAGT FT RLRCGLGEFPAISEYGYVDEPGRWDHWPSGFALTWPDEGSANGTIVIDRGDILLPQKSY FT VSEPIVLTVENGYATRIEGGLDAEMLREYVATFKDPQAYAISHIGWGLQPRASWTTLGL FT YDREATIGMDARAYEGNFLFSLGPNNEAGGSRTTACHIDIPLRRCTVRLDGREVVREGK FT VLD" FT CDS 242665..243282 FT /transl_table=11 FT /locus_tag="BP0582" FT /product="putative isochorismatase" FT /note="Similar to Arthrobacter sp N-carbamoylsarcosine FT amidase SW:CSH_ARTSP (P32400) (264 aa) fasta scores: E(): FT 2e-14, 32.673% id in 202 aa, and to Thermoplasma volcanium FT isochorismatase Tvg0787823 TR:Q97AM6 (EMBL:AP000993) (175 FT aa) fasta scores: E(): 6.1e-07, 28.409% id in 176 aa. FT Identical to BP1958, 100.000% identity (100.000% ungapped) FT in 205 aa overlap." FT /db_xref="GOA:Q7TTD2" FT /db_xref="InterPro:IPR000868" FT /db_xref="UniProtKB/TrEMBL:Q7TTD2" FT /protein_id="CAE44910.1" FT /translation="MSNDLGSYERQGFGAALPLKAPYGLLIVDFVNGFADPAQFGGGNI FT AAAIETTRTVLAAARERGWAVAHSRIVYADDDADGNIFSIKVPGMLTLKEHAPASAIVP FT QLAPQAGEYVVRKSTPSAFYGTMLAAWLAQRGVQTLLVAGATTSGCVRASVVDAMSAGF FT RPLVLSDCVGDRALGPHEANLFDMRQKYAAVMTHDEALAKTK" FT misc_feature 242734..243213 FT /note="HMMPfam hit to PF00857, Isochorismatase family" FT CDS complement(243353..243868) FT /transl_table=11 FT /locus_tag="BP0583" FT /product="probable ring hydroxylating beta subunit" FT /note="Similar to Pseudomonas sp salicylate-5-hydroxylase FT small oxygenase component NagH TR:O52380 (EMBL:AF036940) FT (161 aa) fasta scores: E(): 1.4e-17, 36.364% id in 154 aa, FT and to Burkholderia sp RasC ferredoxin oxidoreductase FT TR:Q9Z5Q7 (EMBL:U62430) (161 aa) fasta scores: E(): FT 8.8e-18, 36.364% id in 154 aa" FT /db_xref="GOA:Q7VS64" FT /db_xref="InterPro:IPR000391" FT /db_xref="UniProtKB/TrEMBL:Q7VS64" FT /protein_id="CAE44911.1" FT /translation="MSQTFFPPRTIDPARAIALKLEVEEFNADYCAALDGGQVESWPDF FT FTETALYRVTARENAELNLPVGLVYAEGRDMMHDRAVAISRTQMFAPRYMLHMVSNTRV FT TSETPDGEIAASSTFLLMQTLVEGPTTLHLAGSYHDRFVRENGTLKLQERQVIYDTAIL FT ANDLVYPV" FT misc_feature complement(243371..243769) FT /note="HMMPfam hit to PF00866, Ring hydroxylating beta FT subunit" FT CDS complement(243883..245172) FT /transl_table=11 FT /locus_tag="BP0584" FT /product="probable Ring hydroxylating alpha subunit" FT /note="Similar to Pseudomonas sp salicylate-5-hydroxylase FT large oxygenase component NagG TR:O52379 (EMBL:AF036940) FT (423 aa) fasta scores: E(): 4.2e-80, 46.731% id in 413 aa, FT and to Pseudomonas aeruginosa O-halobenzoate dioxygenase FT alpha subunit OhbB TR:O87618 (EMBL:AF087482) (421 aa) fasta FT scores: E(): 2.5e-76, 46.229% id in 411 aa" FT /db_xref="GOA:Q7VS63" FT /db_xref="InterPro:IPR017941" FT /db_xref="UniProtKB/TrEMBL:Q7VS63" FT /protein_id="CAE44912.1" FT /translation="MYQSQTVIGRTLAAKDAPLSECAWPQYALHFIPDWVYTNNAVYEQ FT ELEKIFRGKTWNFVALEAELPNAGDYKRSYVGAKPVVVSRAEDGSINVFENRCAHRGAE FT FCRHNQGNAKEFVCPYHQWSYDLKGNLQGIPFKRGVNREGGMPKDFKNDEHGLRRLHVT FT TRNGVVFASYSSEVEPIAEYLTPEILADFDAVFPGKKLKILGYYRNELPCNWKMYHENL FT KDPYHATLLHSFLVVFGLLVAGNKSAMLVDSVHGRHGTMASAKSEDKYATVSEENKKEM FT RSFHDGLRLRDDRFLEFIKEFDSPWSVTMQTIWPNLIVQREMNTLGVRHIIPNGPDSMI FT MQWTMFGYEDDTEEMQRHRLRQGNLMGPAGFLGLEDNEAMKFVQEGVRRASTDVNVIKL FT ESGKQGTSNTLISEAAIRSMYSYYREVMGF" FT misc_feature complement(243889..244635) FT /note="HMMPfam hit to PF00848, Ring hydroxylating alpha FT subunit (catalytic domain)" FT misc_feature complement(244765..244947) FT /note="HMMPfam hit to PF00355, Rieske [2Fe-2S] domain" FT misc_feature complement(244810..244881) FT /note="ScanRegExp hit to PS00570, Bacterial ring FT hydroxylating dioxygenases alpha-subunit signature." FT CDS complement(245208..246470) FT /transl_table=11 FT /locus_tag="BP0585" FT /product="putative ferredoxin reductase" FT /note="Similar to Pseudomonas sp ferredoxin reductase BphA4 FT TR:Q52437 (EMBL:D16831) (408 aa) fasta scores: E(): FT 5.8e-45, 40.244% id in 410 aa, and to Rhizobium meliloti FT MocF TR:Q9R9P5 (EMBL:AF076471) (408 aa) fasta scores: E(): FT 2.2e-49, 43.826% id in 413 aa" FT /db_xref="GOA:Q7VS62" FT /db_xref="HSSP:1D7Y" FT /db_xref="InterPro:IPR013027" FT /db_xref="UniProtKB/TrEMBL:Q7VS62" FT /protein_id="CAE44913.1" FT /translation="MDEIQSIVIVGAGQAGAVAAASLRQLGYRGGLTLVGQEAHPPYER FT PPLSKAVLQGTATHAEAAVHPAGFYAENDIALLTETAVAALDPAARTVRLADGRTLPYD FT RCLLATGGHARELPALPRGRAGVHYIRTLDDALDLRAALRPGVRAAVIGGGFLGLEVAS FT TARELGAKVTVIENGSRLLERALPAIVSDWLAERVRASGVDLRLGGAIAAIGDGPPYAI FT TLADGTQVNADLIVVSIGLAPEVTLARQAGLPLDDNGGICVDSQARTADPQVYAAGDCA FT SQPRACLGTAARFESWQNANEQARAAAAAMLGLAPAAEPYPWFWTDQYGCNIQILGLPQ FT PGLRYVCRPQTDPQAAPRVLWIGLRDGVPCHGIAVNAGGDLRQLRVLFERGIPVDPHRL FT ADPAEALKPLVKAWQAAIAVA" FT misc_feature complement(245631..246452) FT /note="HMMPfam hit to PF00070, Pyridine FT nucleotide-disulphide oxidoreductase" FT CDS complement(246473..246784) FT /transl_table=11 FT /locus_tag="BP0586" FT /product="ferredoxin" FT /note="Similar to Pseudomonas putida naphthalene FT 1,2-dioxygenase system ferredoxin component NdoA or NahaB FT or DoxA or NdoC1 SW:NDOA_PSEPU (P23082) (103 aa) fasta FT scores: E(): 1.4e-20, 55.882% id in 102 aa, and to FT Pseudomonas sp ferredoxin NagaB or PahaB TR:O52381 FT (EMBL:AF036940) (104 aa) fasta scores: E(): 1.9e-19, FT 49.505% id in 101 aa" FT /db_xref="GOA:Q7VS61" FT /db_xref="HSSP:1FQT" FT /db_xref="InterPro:IPR017941" FT /db_xref="UniProtKB/TrEMBL:Q7VS61" FT /protein_id="CAE44914.1" FT /translation="MNWIKIATTDQLEDDEVMPVTAGEAKLALYRSEGEYFASDNVCTH FT AYALLSDGYLEDGCIECPLHQARFDIKTGKAMCAPATADIRIYPLKIENDDIYVDLQA" FT misc_feature complement(246542..246724) FT /note="HMMPfam hit to PF00355, Rieske [2Fe-2S] domain" FT CDS 247254..248357 FT /transl_table=11 FT /locus_tag="BP0589" FT /product="putative exported protein" FT /note="Similar to Rhodobacter sphaeroides periplasmic FT mannitol-binding protein SmoM TR:O30835 (EMBL:AF018073) FT (365 aa) fasta scores: E(): 2.1e-68, 47.411% id in 367 aa, FT and to Agrobacterium tumefaciens Agr_pat_385p TR:AAK90643 FT (EMBL:AE007896) (370 aa) fasta scores: E(): 3.8e-69, FT 48.189% id in 359 aa. Also similar to BP2963 (55.249% FT identity in 362 aa overlap), BP1487 (54.521% identity in FT 365 aa overlap), and to BP2661 (48.916% identity in 323 aa FT overlap)" FT /db_xref="GOA:Q7VS60" FT /db_xref="InterPro:IPR018389" FT /db_xref="UniProtKB/TrEMBL:Q7VS60" FT /protein_id="CAE44915.1" FT /translation="MQRRRFLAQAAGAAGAGLAAVGMPAMAQANPTVRWRMSTSWPKSL FT DTIYGSADELCKRVGQLTDGKFEIRAFPGGELVPSAQNMDAVSNGTVECNHVLSTMYIG FT KNTALTFDTGLSFGLNARQHNAWIHYGGGLQQLRELYKKYNIVNHVCGNVGVQMDGWYR FT KEIKSTADLNGLNMRIGGIGGMVLSKLGVVPQQIPLGDIYPALEKGTIDAAEWIGPYDD FT EKLGFNKVAPYYYSPGWFEGSASITSMVNDKAWEALPPAYQAAFEAACGEQSMRMLANY FT DARNPLALRKLIAGGAKVSFFPKEVMDAVYKASQQLWTELSEKNPDFKAIYPGWKKFQE FT DEAGWFRVAENALDNYTFAAVARAQAK" FT misc_feature 247254..247334 FT /note="Signal peptide predicted for BP0589 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.666 between residues 27 and 28" FT CDS 248387..250759 FT /transl_table=11 FT /locus_tag="BP0590" FT /product="oxidoreductase, large chain" FT /note="Similar to Pseudomonas putida quinoline FT 2-oxidoreductase, large chain QorL TR:P72224 (EMBL:X98131) FT (788 aa) fasta scores: E(): 1.2e-91, 36.882% id in 789 aa, FT and to Mycobacterium tuberculosis CDC1551 carbon monoxide FT dehydrogenase, large subunit, putative Mt0388 TR:AAK44610 FT (EMBL:AE006943) (799 aa) fasta scores: E(): 3.4e-84, FT 36.181% id in 796 aa" FT /db_xref="GOA:Q7VS59" FT /db_xref="HSSP:1FFV" FT /db_xref="InterPro:IPR008274" FT /db_xref="UniProtKB/TrEMBL:Q7VS59" FT /protein_id="CAE44916.1" FT /translation="MTTEHTGAEVGAGSRQGVGARVPRKEDARHLHGKGNFVADMAMPG FT LCEVAFLRSPLAHARITDVRVPESVRDKVVLRSMMGDARDIAADSTLPTYQPSVQPPLA FT SGKVRFVGEPVAMTFAPTRAEAEDHAELVEVDYDDLPVYADVAGAQQATSDLVHEHWRD FT NVFVTLNADRDFDEHAARAEVVVRRKIDLARQCMVPMEGKAVLAYWDHQADQLVVISAT FT QVPHMIRSVLAQCLDLEQGRVRVVSPDVGGAFGYKCVLQQEELCVAWLAKTYKRPFRFI FT |