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EBI DbfetchID BX640411; SV 1; linear; genomic DNA; STD; PRO; 346359 BP. XX AC BX640411; XX DT 09-AUG-2003 (Rel. 76, Created) DT 23-OCT-2008 (Rel. 97, Last updated, Version 7) XX DE Bordetella pertussis strain Tohama I, complete genome; segment 1/12 XX KW complete genome. XX OS Bordetella pertussis OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; OC Alcaligenaceae; Bordetella. XX RN [2] RP 1-346359 RA Sebaihia M.; RT ; RL Submitted (06-AUG-2003) to the EMBL/GenBank/DDBJ databases. RL Submitted on behalf of the Pathogen Sequencing Unit, Sanger Institute, RL Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, E-mail: RL ms5@sanger.ac.uk XX RN [3] RA Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E., RA Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., RA Cerdeno-Tarraga A.M., Temple L., James K., Harris B., Quail M.A., RA Achtman M., Atkin R., Baker S., Basham D., Bason N., Cherevach I., RA Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., RA Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., RA Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., RA Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., RA Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., RA Barrell B.G., Maskell D.J.; RT "Comparative analysis of the genome sequences of Bordetella pertussis, RT Bordetella parapertussis and Bordetella bronchiseptica"; RL Nat. Genet. 35(1):0-0(2003). XX DR EMBL-CON; BX470248. DR InterPro; IPR005501; LamB_YcsF. DR RFAM; RF00521; SAM_alpha. DR UniProtKB/Swiss-Prot; O30444; Y150_BORPE. XX FH Key Location/Qualifiers FH FT source 1..346359 FT /organism="Bordetella pertussis" FT /strain="Tohama I" FT /mol_type="genomic DNA" FT /db_xref="taxon:520" FT CDS 1..1920 FT /transl_table=11 FT /gene="gidA" FT /locus_tag="BP0001" FT /product="glucose inhibited division protein A" FT /note="Similar to Escherichia coli glucose inhibited FT division protein A GidA or B3741 SW:GIDA_ECOLI (P17112) FT (629 aa) fasta scores: E(): 2.9e-164, 68.680% id in 629 aa" FT /db_xref="GOA:Q7W0T0" FT /db_xref="InterPro:IPR002218" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0T0" FT /protein_id="CAE40381.1" FT /translation="MDFPREFDVIVVGGGHAGTEAALAAARAGAQTLLLTHNIETLGQM FT SCNPSIGGIGKGHLVKEVDALGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRVLY FT RNAIRAQLENQPNLWLFQQAVDDLMVQGDQVVGAVTQIGLRFRARTVVLTAGTFLNGLI FT HVGLQNYSGGRAGDPPANSLGQRLKELQLPQGRLKTGTPPRIDGRSINYSVLEEQPGDL FT DPVPVFSFLGKASMHPRQLPCWITHTNARTHEIIRGGLDRSPMYSGVIEGVGPRYCPSI FT EDKIHRFADKASHQVFLEPEGLNTHEIYPNGVSTSLPFDVQYELIHSLPGLENAHILRP FT GYAIEYDYFDPRALKSTLETKAISGLFFAGQINGTTGYEEAAAQGLLAGANAALQAQGK FT EPWVPRRDEAYLGVLVDDLVTRGVTEPYRMFTSRAEYRLSLREDNADLRLTEIGRRLGL FT VDDVRWDAFSRKRDAVAQEVERLKSTWVNPRVLPAHAAEALLGKAIEREYSLSDLLKRP FT NVSYEALMQARTDEGELLAGPGVLEDQVLAEQVETQVKYAGYIARQQDEVQKHLSHEQQ FT PIPADIDYDAVTSLSFEVRQKLKTHRPETIGQAARVSGVTPAAISLLLIHLKRLHYGSR FT KQAA" FT misc_feature 19..1893 FT /note="HMMPfam hit to PF01134, Glucose inhibited division FT protein A" FT misc_feature 820..864 FT /note="ScanRegExp hit to PS01280, Glucose inhibited FT division protein A family signature 1. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature 1810..1875 FT /note="Predicted helix-turn-helix motif with score 1129 FT (+3.03 SD) at aa 604-625, sequence ETIGQAARVSGVTPAAISLLLI" FT CDS 1917..2609 FT /transl_table=11 FT /gene="gidB" FT /locus_tag="BP0002" FT /product="glucose inhibited division protein B" FT /note="Similar to Pseudomonas putida glucose inhibited FT division protein B GidB SW:GIDB_PSEPU (P25757) (216 aa) FT fasta scores: E(): 1e-24, 42.593% id in 216 aa, and to FT Escherichia coli glucose inhibited division protein B GidB FT or B3740 or Z5240 or Ecs4682 SW:GIDB_ECOLI (P17113) (207 FT aa) fasta scores: E(): 1.2e-12, 39.000% id in 200 aa" FT /db_xref="GOA:Q7W0S9" FT /db_xref="InterPro:IPR003682" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0S9" FT /protein_id="CAE40382.1" FT /translation="MSAVPDIPGGPAQRLAQACDALRLPADAGQQQKLLRYIEQMQRWN FT RTYNLTAIRDPGQMLVQHLFDSLSVVAPLERGLPAAGSGARVKLFDVGSGGGLPGVVLA FT IMRAHWDVTCVDAVEKKTAFVRQMAGALGLPNLQAAHTRIEQLEPAQCDVVISRAFASL FT QDFAKLAGRHVREGGTLVAMKGKVPDDEIQALQQHGHWTVERIEPLVVPALDAQRCLIW FT MRRSQGNI" FT misc_feature 1917..2135 FT /note="ScanRegExp hit to PS00430, TonB-dependent receptor FT proteins signature 1." FT misc_feature 2004..2579 FT /note="HMMPfam hit to PF02527, Glucose inhibited division FT protein" FT CDS 2606..3403 FT /transl_table=11 FT /gene="parA" FT /gene_synonym="soj" FT /locus_tag="BP0003" FT /product="ParA family protein" FT /note="Similar to Caulobacter crescentus chromosome FT partitioning protein ParA or Cc3753 SW:PARA_CAUCR (O05189) FT (267 aa) fasta scores: E(): 1.9e-46, 49.412% id in 255 aa, FT and to Bacillus subtilis sporulation initiation inhibitor FT protein Soj SW:SOJ_BACSU (P37522) (253 aa) fasta scores: FT E(): 2.7e-44, 48.988% id in 247 aa" FT /db_xref="GOA:Q7W0S8" FT /db_xref="HSSP:1IHU" FT /db_xref="InterPro:IPR002586" FT /db_xref="UniProtKB/TrEMBL:Q7W0S8" FT /protein_id="CAE40383.1" FT /translation="MKNIPPSKSARVFCIANQKGGVGKTTTAINLAAGLATHKQRVLLV FT DLDPQGNATMGSGIDKSTLESNLYQVLIGEAGIEQTRVRSESGGYDVLPANRELSGAEI FT DLVQMDERERQLKAAIDKIAGEYDFVLIDCPPTLSLLTLNGLAAAHGVIIPMQCEYFAL FT EGLSDLVNTIKRVHRNINNELRVIGLLRVMFDPRMTLQQQVSAQLESHFGDKVFTTVVP FT RNVRLAEAPSYGMPGVVYDRASRGAQAYIAFGAEMIERVKELD" FT misc_feature 2879..3214 FT /note="HMMPfam hit to PF00991, ParA family ATPase" FT CDS 3410..4171 FT /transl_table=11 FT /locus_tag="BP0004" FT /product="Putative acetyltransferase, GnaT family" FT /note="Similar to Caulobacter crescentus acetyltransferase, FT GnaT family Cc2209 TR:Q9A685 (EMBL:AE005892) (207 aa) fasta FT scores: E(): 1.8e-07, 34.653% id in 202 aa, and to FT Rhizobium meliloti putative acetyltransferase protein FT Smc02449 TR:CAC47203 (EMBL:AL591791) (308 aa) fasta scores: FT E(): 6.1e-05, 31.818% id in 242 aa" FT /db_xref="GOA:Q7W0S7" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:Q7W0S7" FT /protein_id="CAE40384.1" FT /translation="MPAVLAVPAAHPAPAAGGELARLEEAALNATTVREQMLYEGWLVR FT WAPSRAKRARCVNVLGLSTRPLDERLAYCTRWYAGHGVPLIVRLTSIGPDFSLDAQLHE FT RGFVAFDRTCVMAASVVPFTAQAPSGLVFERTTPGRFAQEAGRLQAAPLENLPLLVRDA FT SGECIAAGLAAFDAELVGLFDIVTAPQRRRQGCGAAVLKYLLEQASHAGARQAYLQVEP FT QNTAARALYARFGFVDRYTYWYRSMSEATPV" FT misc_feature 3884..4120 FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family" FT CDS 4215..5132 FT /transl_table=11 FT /gene="parB" FT /locus_tag="BP0005" FT /product="probable chromosome partitioning protein ParB" FT /note="Similar to Pseudomonas putida probable chromosome FT partitioning protein ParB SW:PARB_PSEPU (P31857) (290 aa) FT fasta scores: E(): 3.9e-40, 48.136% id in 295 aa" FT /db_xref="GOA:Q7W0S6" FT /db_xref="InterPro:IPR004437" FT /db_xref="UniProtKB/TrEMBL:Q7W0S6" FT /protein_id="CAE40385.1" FT /translation="MVTKKPKGLGRGLDALLGADVPAIDNIGKAPAAAPEGPPATLPVS FT KMRAGKYQPRTRMDEGALNELAESIRTQGIMQPILVRALGADAPGQYEIIVGERRFRAA FT QLAGLKEVPVLVREVADENAAVMALIENIQREDLNPLEEAHGVRRLLDEFGLTHEQAAQ FT AIGRSRSATSNLLRLLNLAAPVQTMLLAGDVDMGHARALLAVDAATQIQLANQVIAKRL FT SVREAEKLVARAQKDVDAAPRKKGNGASRDVTRLEEALSDHLGTRVALKVGAREKGQIV FT IDFHGWEHLNSLLERQGLSGVVDA" FT misc_feature 4332..4613 FT /note="HMMPfam hit to PF02195, ParB-like nuclease domain" FT misc_feature 4680..4745 FT /note="Predicted helix-turn-helix motif with score 1537 FT (+4.42 SD) at aa 156-177, sequence LTHEQAAQAIGRSRSATSNLLR" FT CDS join(5125..5907,5911..6126) FT /pseudo FT /transl_table=11 FT /gene="ansB" FT /locus_tag="BP0006" FT /product="L-asparaginase II precursor (pseudogene)" FT /EC_number="3.5.1.1" FT /note="Pseudogene. Contains an in-frame stop codon. The FT sequence has been checked and believed to be correct. FT Similar to Escherichia coli L-asparaginase II precursor FT AnsB or B2957 SW:ASG2_ECOLI (P00805) (348 aa) fasta scores: FT E(): 2.7e-44, 46.224% id in 331 aa" FT /db_xref="PSEUDO:CAE40386.1" FT misc_feature 5155..5181 FT /note="ScanRegExp hit to PS00144, Asparaginase / FT glutaminase active site signature 1. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature join(5173..5907,5911..6108) FT /note="HMMPfam hit to PF00710, Asparaginase" FT misc_feature 5389..5421 FT /note="ScanRegExp hit to PS00917, Asparaginase / FT glutaminase active site signature 2. Confirmed by InterPro FT eMOTIF pattern match." FT variation 5908..5910 FT /note="inframe TAG stop; CAG in parapertussis" FT tRNA 6236..6322 FT /note="tRNA Tyr anticodon GTA, Cove score 72.20" FT tRNA 6511..6584 FT /note="tRNA Gly anticodon TCC, Cove score 82.17" FT tRNA 6591..6665 FT /note="tRNA Thr anticodon GGT, Cove score 86.85" FT CDS 6722..7912 FT /transl_table=11 FT /gene="tufA" FT /gene_synonym="tuf" FT /locus_tag="BP0007" FT /product="elongation factor Tu" FT /note="Similar to Burkholderia cepacia elongation factor Tu FT Tuf SW:EFTU_BURCE (P33167) (396 aa) fasta scores: E(): FT 2.4e-139, 92.658% id in 395 aa, and to Escherichia coli FT elongation factor Tu TufA TR:AAA50993 (EMBL:J01690) (394 FT aa) fasta scores: E(): 3e-123, 81.519% id in 395 aa. FT Identical to BP3611, 100.000% identity (100.000% ungapped) FT in 396 aa overlap" FT /db_xref="GOA:Q7TT91" FT /db_xref="HSSP:1ETU" FT /db_xref="InterPro:IPR004160" FT /db_xref="UniProtKB/Swiss-Prot:Q7TT91" FT /protein_id="CAE40387.1" FT /translation="MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLSNKFGGEAR FT GYDQIDAAPEEKARGITINTSHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAIL FT VVSAADGPMPQTREHILLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSKYDF FT PGDDTPIVKGSAKLALEGDKGELGEQAILSLAQALDTYIPTPERAVDGAFLMPVEDVFS FT ISGRGTVVTGRIERGVVKVGEEIEIVGIKPTVKTTCTGVEMFRKLLDQGQAGDNVGILL FT RGTKREDVERGQVLAKPGSINPHTDFTAEVYILSKEEGGRHTPFFNGYRPQFYFRTTDV FT TGTIDLPADKEMVLPGDNVSMTVKLLAPIAMEEGLRFAIREGGRTVGAGVVAKIIK" FT misc_feature 6749..7849 FT /note="HMMPfam hit to PF00009, Elongation factor Tu family" FT misc_feature 6776..6799 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 6872..6919 FT /note="ScanRegExp hit to PS00301, GTP-binding elongation FT factors signature. Confirmed by InterPro eMOTIF pattern FT match." FT tRNA 8023..8098 FT /note="tRNA Trp anticodon CCA, Cove score 85.26" FT CDS 8151..8531 FT /transl_table=11 FT /gene="secE" FT /gene_synonym="prlG" FT /locus_tag="BP0008" FT /product="preprotein translocase SecE subunit" FT /note="Similar to Escherichia coli preprotein translocase FT SecE subunit SecE or PrlG or B3981 or Z5554 or Ecs4904 FT SW:SECE_ECOLI (P16920) (127 aa) fasta scores: E(): 7.6e-06, FT 32.000% id in 125 aa, and to Vibrio alginolyticus FT preprotein translocase SecE subunit SecE SW:SECE_VIBAL FT (Q9ZNE7) (126 aa) fasta scores: E(): 4.9e-08, 39.844% id in FT 128 aa" FT /db_xref="GOA:Q7W0S5" FT /db_xref="InterPro:IPR005807" FT /db_xref="UniProtKB/TrEMBL:Q7W0S5" FT /protein_id="CAE40388.1" FT /translation="MSNTSIETVTSTADRIKLGLAVLVVIAGIVGFSMLDAQPMVARIG FT VFVGGLVVAALLAWFSEPGRRTLSFAGESYNEVKRVSWPTRKETIQMTGIVFAFVAVMG FT LLMWVLDKGIEWVLYGLLLGWK" FT misc_feature join(8196..8255,8265..8333,8427..8480) FT /note="3 probable transmembrane helices predicted for FT BP0008 by TMHMM2.0 at aa 16-35, 39-61 and 93-110" FT misc_feature 8346..8516 FT /note="HMMPfam hit to PF00584, SecE/Sec61-gamma subunits of FT protein translocation complex" FT CDS 8541..9074 FT /transl_table=11 FT /gene="nusG" FT /locus_tag="BP0009" FT /product="transcription antitermination protein NusG" FT /note="Similar to Escherichia coli transcription FT antitermination protein NusG or B3982 or Z5555 or Ecs4905 FT SW:NUSG_ECOLI (P16921) (181 aa) fasta scores: E(): 1.2e-41, FT 60.345% id in 174 aa, and to Neisseria meningitidis FT (serogroup A) transcription antitermination protein NusG or FT Nma0147 or Nmb0126 TR:Q9JRD9 (EMBL:AL162752) (178 aa) fasta FT scores: E(): 1.4e-46, 67.045% id in 176 aa" FT /db_xref="GOA:Q7W0S4" FT /db_xref="InterPro:IPR005824" FT /db_xref="UniProtKB/TrEMBL:Q7W0S4" FT /protein_id="CAE40389.1" FT /translation="MSKRWYVVHVYSGMEKSVQKALNERIERAELQTSFGRILVPSEEV FT VEVKGGQKSITERRIFPGYVLVEMDLTDETWHLVKNTNRVTGFLGGSGNRPTPISEREV FT EKILNQMEEGVEKPRPKILFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTIFGR FT ATPVELDFSQVEKT" FT misc_feature 8544..8675 FT /note="HMMPfam hit to PF02357, Transcription termination FT factor nusG" FT misc_feature 9018..9047 FT /note="ScanRegExp hit to PS01014, Transcription termination FT factor nusG signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 9138..9569 FT /transl_table=11 FT /gene="rplK" FT /gene_synonym="relC" FT /locus_tag="BP0010" FT /product="50S ribosomal protein L11" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L11 RplK or RelC or B3983 SW:RL11_ECOLI (P02409) (141 aa) FT fasta scores: E(): 1.3e-34, 66.429% id in 140 aa, and to FT Neisseria meningitidis 50S ribosomal protein L11 RplK or FT Nma0146 TR:Q9JX02 (EMBL:AL162752) (144 aa) fasta scores: FT E(): 1.3e-44, 85.211% id in 142 aa" FT /db_xref="GOA:Q7W0S3" FT /db_xref="InterPro:IPR006519" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0S3" FT /protein_id="CAE40390.1" FT /translation="MAKKIVGFIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAK FT TQGMELGLPIPVVITAFADKSFTFIMKTPPATVLIKKASGVQKGSAKPHTDKVGTLTRA FT QAEEIAKTKQPDLTAADLDAAVRTIAGSARSMGITVEGG" FT misc_feature 9162..9560 FT /note="HMMPfam hit to PF00298, Ribosomal protein L11" FT misc_feature 9516..9563 FT /note="ScanRegExp hit to PS00359, Ribosomal protein L11 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 9572..10270 FT /transl_table=11 FT /gene="rplA" FT /locus_tag="BP0011" FT /product="50S ribosomal protein L1" FT /note="Similar to Escherichia coli 50S ribosomal protein L1 FT RplA or B3984 SW:RL1_ECOLI (P02384) (233 aa) fasta scores: FT E(): 1.1e-50, 65.801% id in 231 aa, and to Neisseria FT meningitidis (serogroup A) 50S ribosomal protein L1 RplA or FT Nma0145 or Nmb0128 TR:Q9JRJ1 (EMBL:AL162752) (231 aa) fasta FT scores: E(): 1.3e-52, 68.261% id in 230 aa" FT /db_xref="GOA:Q7W0S2" FT /db_xref="HSSP:1AD2" FT /db_xref="InterPro:IPR016094" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0S2" FT /protein_id="CAE40391.1" FT /translation="MAKLSKRAAAIAQKIDRTKLYPVGEALNLVKETATAKFDESIDVA FT VQLGIDPKKSDQLVRGSVVLPAGTGKTVRVAVFAQGEKADAARAAGADIVGLDDLAEQI FT KAGQMDFDVVIASPDTMRVVGALGQVLGPRGLMPNPKVGTVTPDVATAVKNAKAGQIQY FT RTDKAGIIHATIGRASFGVEQLQNNLAALVDALQKARPAAAKGIYLRKLAVSSTMGGGA FT RVEIASLSAN" FT misc_feature 9614..10234 FT /note="HMMPfam hit to PF00687, Ribosomal protein L1p/L10e FT family" FT misc_feature 9932..9988 FT /note="ScanRegExp hit to PS01199, Ribosomal protein L1 FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 10513..11037 FT /transl_table=11 FT /gene="rplJ" FT /locus_tag="BP0013" FT /product="50S ribosomal protein L10" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L10 RplJ or B3985 or Z5558 or Ecs4908 SW:RL10_ECOLI FT (P02408) (164 aa) fasta scores: E(): 4.4e-18, 43.429% id in FT 175 aa, and to Neisseria meningitidis (serogroups A and B) FT 50S ribosomal protein L10 RplJ or Nma0144 or Nmb0130 FT SW:RL10_NEIMA (Q9JQP7) (166 aa) fasta scores: E(): 6.6e-29, FT 55.233% id in 172 aa" FT /db_xref="GOA:Q7W0S1" FT /db_xref="InterPro:IPR002363" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0S1" FT /protein_id="CAE40392.1" FT /translation="MSLNRQEKAVVIEEVSAQVAKAQSIVIAEYRGLDVASVTVLRKTA FT RESGVYLRVLKNTLVRRAVAGTAFEPLSEQLTGPLIYGISADPVAAAKVLAGFAKSNDK FT LVIKAGSLPNSLLTQDGVKALATMPSREELLSKLLGTMQAPIAQFVRTLNEVPTKFARG FT LAAVRDQKAAA" FT misc_feature 10519..10812 FT /note="HMMPfam hit to PF00466, Ribosomal protein L10" FT CDS 11119..11502 FT /transl_table=11 FT /gene="rplL" FT /locus_tag="BP0014" FT /product="50S ribosomal protein L7/L12" FT /note="Similar to Escherichia coli 50S ribosomal protein FT L7/L12 RplL or B3986 SW:RL7_ECOLI (P02392) (120 aa) fasta FT scores: E(): 7.6e-19, 61.905% id in 126 aa, and to FT Neisseria perflava 50S ribosomal protein L7/L12 RplL FT SW:RL7_NEIPE (Q9F5M1) (123 aa) fasta scores: E(): 7.5e-22, FT 66.142% id in 127 aa" FT /db_xref="GOA:Q7W0S0" FT /db_xref="HSSP:1CTF" FT /db_xref="InterPro:IPR013823" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0S0" FT /protein_id="CAE40393.1" FT /translation="MALSKAEILDAIAGMSVLELSELIKEMEEKFGVSAAAAAVAVAAP FT AAGGAGAAAAEEQTEFTVVLLEAGANKVSVIKAVRELTGLGLKEAKDLVDGAPKPVKEA FT LPKADAEAAKKKLEEAGAKVEVK" FT misc_feature 11296..11499 FT /note="HMMPfam hit to PF00542, Ribosomal protein L7/L12 FT C-terminal domain" FT CDS 11662..15774 FT /transl_table=11 FT /gene="rpoB" FT /gene_synonym="groN" FT /gene_synonym="nitB" FT /gene_synonym="rif" FT /gene_synonym="ron" FT /gene_synonym="stl" FT /gene_synonym="stv" FT /gene_synonym="tabD" FT /locus_tag="BP0015" FT /product="DNA-directed RNA polymerase beta chain" FT /EC_number="2.7.7.6" FT /note="Similar to Escherichia coli DNA-directed RNA FT polymerase beta chain RpoB or GroN or NitB or Rif or Ron or FT Stl or Stv or TabD or B3987 or Z5560 or ECS4910 FT SW:RPOB_ECOLI (P00575) (1342 aa) fasta scores: E(): 0, FT 64.260% id in 1371 aa, and to Pseudomonas aeruginosa FT DNA-directed RNA polymerase beta chain RpoB or PA4270 FT SW:RPOB_PSEAE (Q51561) (1357 aa) fasta scores: E(): 0, FT 67.080% id in 1370 aa" FT /db_xref="GOA:Q7W0R9" FT /db_xref="InterPro:IPR014724" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0R9" FT /protein_id="CAE40394.1" FT /translation="MPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLTFLQADTAT FT SDRVNEGLQAAFSSIFPIVSHNGMARLEFVSYALGEPVFDVKECQQRGLTYASPLRAKV FT RLVLLDREVSKPTIKEVKEQEVYMGEIPLMTGTGSFVINGTERVIVSQLHRSPGVFFEH FT DRGKTHSSGKLLFSARVIPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILLKAIGMTPE FT SILAHFFDFDNFELKSEGGMMEFVAERWKGEMARFDIADRDGKVIVEKDKRINAKHLRD FT LAAGGIQRVSVPEDFLYGRVLAKNIVDPDTGEVVAHANDEITESVLNAMRAANVRDIQT FT LYTNDLDRGPYISQTLRADETADQMAARVAIYRMMRPGEPPTEEAVEALFQRLFYSEET FT YDLSRVGRMKVNSRLGRGDDSTGPMTLTNEDILETIKVLVELRNGRGQIDDIDHLGNRR FT VRCVGELAENQFRAGLVRVERAVKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQL FT SQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG FT LINSMALYARLNEYGFLETPYRKIIDGKVSDQIDYLSAIEESHYVIAQANAALDDEGRF FT VDDLVACREAGETMLTAPGNVHYMDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQ FT AVPCLRPEKPLVGTGVERTVAVDSGTTVQALRGGVVDHVDADRVVIRVNDEENVAGEVG FT VDIYNLIKYTRSNQNTNINQRPIVARGDKVAKGDVLADGASTDLGELALGQNMLIAFMP FT WNGYNFEDSILISERVVADDRYTSIHIEELTVVARDTKLGPEEITRDISNLAETQLNRL FT DDSGIVYIGAEVSADDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGM FT TGTVIDVQVFTREGIVRDKRAQSIIDDELRRYRQDLNDQLRIVENDQFDRIEKMLVGKT FT VNGGPRKLAKGATLTKAYLADLDRWQWFDIRLADEQHAVVLEQAKESLEQKRHQFDLAF FT EEKRKKLTQGDELPPGVLKMIKVYLAVKRRLQPGDKMAGRHGNKGVVSRITPVEDMPHM FT ADGTPADIVLNPLGVPSRMNVGQVLEVHLGWAAKGVGYRIADMLRDERTAQAKSVRGYL FT EKVYNTTGSSAHIDSLTDEEVLELANNLKKGVPFATPVFDGATEEEIGKMLELAYPDDV FT AARMRLTASRSQAWLYDGRTGEQFERPVTIGYMHYLKLHHLVDDKMHARSTGPYSLVTQ FT QPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDITGRTKVYENIVKGDHVI FT DAGMPESFNVLVKEIRSLALDMDLERN" FT misc_feature 11905..15642 FT /note="HMMPfam hit to PF00562, RNA polymerase beta subunit" FT misc_feature 14905..14943 FT /note="ScanRegExp hit to PS01166, RNA polymerases beta FT chain signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 15774..20018 FT /transl_table=11 FT /gene="rpoC" FT /gene_synonym="tabB" FT /locus_tag="BP0016" FT /product="DNA-directed RNA polymerase beta' chain" FT /EC_number="2.7.7.6" FT /note="Similar to Escherichia coli DNA-directed RNA FT polymerase beta' chain RpoC or TabB or B3988 or Z5561 or FT ECS4911 SW:RPOC_ECOLI (P00577) (1407 aa) fasta scores: E(): FT 0, 66.405% id in 1399 aa, and to Neisseria meningitidis FT DNA-directed RNA polymerase beta' chain RpoC or NMA0141 FT TR:Q9JX03 (EMBL:AL162752) (1391 aa) fasta scores: E(): 0, FT 77.095% id in 1384 aa" FT /db_xref="GOA:Q7W0R8" FT /db_xref="InterPro:IPR012754" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0R8" FT /protein_id="CAE40395.1" FT /translation="MKALLDLFKQVSQDEQFDAIKIGIASPEKIRSWSFGEVRKPETIN FT YRTFKPERDGLFCAKIFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVAKVRRERMGH FT IELASPVAHIWFLKSLPSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDD FT DFLAKTEEYGDDFRALMGAEAVRELLRTIDIDREVETLRGELKATSSEAKIKKISKRLK FT VLEGFQKSGIKAEWMVMEVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKR FT LLELKAPEIILRNEKRMLQEAVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQ FT NLLGKRVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFIFNRLEMMGLATTIKAAKK FT LVESQEPVVWDILEEVIREHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFN FT ADFDGDQMAVHVPLSLEAQLEARTLMLASNNVLFPANGEPSIVPSQDIVLGLYYTTRER FT INGKGEGIFFADVSEVQRAYDNGEVELQTRITVRLTEYERDEQGEWQPVKHRHETTVGR FT ALLSEILPKGLPFTVLNKALKKKEISRLINQSFRRCGLRDTVIFADKLMQSGFRLATRG FT GISIAMEDMLIPKAKEGILAEASREVKEIDKQYSSGLVTSQERYNNVVDIWGKAGDKVG FT KAMMEQLATEPVVNRHGEEVRQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGS FT IIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVITED FT DCGTSHGYAMKALVEGGEVIEPLRDRILGRVAAIDVVNPDTQETAIAAGTLLDEDLVDL FT IDRLGVDEVKVRTPLTCETRHGLCAHCYGRDLGRGSHVNVGEAVGVIAAQSIGEPGTQL FT TMRTFHIGGAASRSALASAVETKSNGTVGFASTMRYVTNAKGERVAISRSGELAIFDDN FT GRERERHKIPYGATVLVGDGEAVKAGTRLASWDPLTRPIVSEYSGAVRFENIEEGVTVA FT KQVDEVTGLSTLVVITPKTRGGKIVMRPQIKLVNENGEDVKIAGTDHSVNISFPVGALI FT TVRDGQQVAVGEVLARIPQESQKTRDITGGLPRVAELFEARSPKDAGMLAEVTGTVSFG FT KDTKGKQRLVITDLEGVSHEFLILKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQGI FT EKLATYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVNIVDPGDTEFIPGEQVERSEL FT LNENDRVVAEDKRPASYDNVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDL FT RGLKENVIVGRLIPAGTGLAYHIARKDKEALEAAEREAARQLANPFEDAPVTVGGEPEA FT PAADTPSDDSAE" FT misc_feature 16476..18266 FT /note="HMMPfam hit to PF00623, RNA polymerase alpha FT subunit" FT misc_feature 16755..16778 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 18429..19880 FT /note="HMMPfam hit to PF01854, RNA polymerase A/beta'/A'' FT subunit" FT CDS complement(20127..20531) FT /transl_table=11 FT /locus_tag="BP0017" FT /product="putative lipoprotein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7W0R7" FT /protein_id="CAE40396.1" FT /translation="MPIILRPFLPSLSLAVLALSGCANLSQPAAEAPATPAALQALAEV FT RTEYGAGHYGEVIRRVARSDELAAAPKAVRIEAFKLQAFSYCVSNYTQLCEDAFVRILH FT LDSSFTLAPNEAGHPAWGPVFRAAQSKAGT" FT CDS 20772..21947 FT /transl_table=11 FT /locus_tag="BP0018" FT /product="putative membrane protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7W0R6" FT /protein_id="CAE40397.1" FT /translation="MPLFAASQHPRSPFAGAAPLAHRPLSAIAATAAGGVPQARIKRLL FT GELVPQLASVHEQGHICGDITVDSVGLDESGRAHLLALNGAAQGEAALPAPGYAPFELY FT VEDPAWPRGPWTDIYALSAVAHSLITGRRPPAAPERSVNDGYQPLAQRDLPKYDNDFLR FT AIDAGLAVRPHTFEAFVDSLKFPEPEPPAEAMAPLPSEPPPRDEVHDEEPVRQRPAVRS FT ILFAILLALATLGVAVYWWQRLTGTPSGVITSSERVTTPGATATPSDSREAEPPAAGAA FT SPQGGDAGSADTSGAAPPAQAQAGPDAAPAPDVAPEDAATDAQAESEAAATPAPAAARV FT TVRINVQPWGEIWINGVRRGVSPPMKELRLVPGRYSVVVRNADLPPYRATL" FT misc_feature 21426..21494 FT /note="1 probable transmembrane helix predicted for BP0018 FT by TMHMM2.0 at aa 219-241" FT CDS complement(join(22008..22421,22420..24351)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0019" FT /product="probable two-component sensor protein FT (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 644. The frameshift occurs within FT a (GC)5 polymeric tract. The sequence has been checked and FT believed to be correct. Similar to Pseudomonas aeruginosa FT probable two-component sensor PA4036 TR:Q9HWZ1 FT (EMBL:AE004820) (766 aa) fasta scores: E(): 6.1e-47, FT 37.247% id in 792 aa, and to Caulobacter crescentus FT putative sensory box histidine kinase CC3327 TR:Q9A377 FT (EMBL:AE005994) (761 aa) fasta scores: E(): 6.9e-39, FT 34.522% id in 785 aa" FT /db_xref="PSEUDO:CAE40398.1" FT misc_feature complement(22020..22370) FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, phytochrome-like ATPase" FT variation complement(22419..22428) FT /note="(GC)5 in pertussis; (GC)6 in parapertussis" FT misc_feature complement(22498..22695) FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain" FT CDS complement(24353..25459) FT /transl_table=11 FT /locus_tag="BP0020" FT /product="putative peptidoglycan binding protein" FT /note="Similar to Caulobacter crescentus peptidoglycan FT binding domain protein CC3326 TR:Q9A378 (EMBL:AE005994) FT (457 aa) fasta scores: E(): 3.3e-23, 33.711% id in 353 aa" FT /db_xref="GOA:Q7W0R5" FT /db_xref="InterPro:IPR016930" FT /db_xref="UniProtKB/TrEMBL:Q7W0R5" FT /protein_id="CAE40399.1" FT /translation="MIRPFAPAFMLVCALVASAAVQAQPAGSLGENFLYRVRSGDTLIA FT LASTYTGNESNWSILQTLNRVDDPQRLPIALELRIPLAMIPVQAAGAEVVHVSGNATAD FT GQALRVGTQIVEGSTIRTASGSFVTLKLSDGSQVTIPENGTVAANRLRQFQRVPLTDSI FT FQVQQGELESRVAPGGQGVGRFEIRTPVAVTGVRGTRFRVKSSPRGASSEVLEGSVRLQ FT PHAPDAALATPVAVSSGYGANVGSDGAFSGVQALLPAPQLQAPARAASGGWTVPFAPVS FT GASAYIVRVSRDAEGMHVVASDRFDTNDVRFRAPGAGTYYVAVRAVDASGLNGREAVQP FT FEGANVLSTPYGLSVATGTGDLVLLSEF" FT misc_feature complement(25217..25357) FT /note="HMMPfam hit to PF01476, LysM domain" FT misc_feature complement(25391..25459) FT /note="Signal peptide predicted for BP0020 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.967 between residues 23 and 24" FT CDS complement(join(25477..25797,25800..26213)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0021" FT /product="probable two-component response regulator FT (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 138. The frameshift occurs within FT a (G)5 homopolymeric tract. The sequence has been checked FT and believed to be correct. Similar to Caulobacter FT crescentus DNA-binding response regulator CC3325 TR:Q9A379 FT (EMBL:AE005994) (236 aa) fasta scores: E(): 3.6e-38, FT 47.009% id in 234 aa, and to Pseudomonas aeruginosa FT probable two-component response regulator PA4032 TR:Q9HWZ5 FT (EMBL:AE004820) (238 aa) fasta scores: E(): 9.7e-29, FT 41.277% id in 235 aa" FT /db_xref="PSEUDO:CAE40400.1" FT misc_feature complement(25585..25755) FT /note="HMMPfam hit to PF00486, Transcriptional regulatory FT protein, C terminal" FT variation complement(25799..25803) FT /note="(G)5 in pertussis, CGG in parapertussis" FT misc_feature complement(25863..26201) FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain" FT CDS 26471..27286 FT /transl_table=11 FT /locus_tag="BP0022" FT /product="Two-component response regulator" FT /note="Similar to Zymomonas mobilis aerobic respiration FT control protein ArcA TR:Q9X3W0 (EMBL:AF088896) (241 aa) FT fasta scores: E(): 2.5e-10, 30.638% id in 235 aa, and to FT Rhodobacter sphaeroides DmsR TR:O32479 (EMBL:D89075) (232 FT aa) fasta scores: E(): 1.6e-10, 28.632% id in 234 aa." FT /db_xref="GOA:Q7W0R4" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W0R4" FT /protein_id="CAE40401.1" FT /translation="MRNTAPHCLKCVQARAFPFERLKAGREPADWQGFVMKQLSTLIMT FT PDDADRDRIIAAMLLAGISAKGCSTPLELFGLLSEDTYDAVVMDLSELGELGYALVARL FT RGSPELGIIVIGGNLTLDARLRCLQSGADACVPLPADERELACVLLALARRLPAWQEDE FT EAVAQRGTDDEGWELRDQDWTLVAPGGEELSLSANERQIVRLLLGAAGRAIGRAELASE FT LAVDGPAVRSTGERSIDVIVSRLRRKAELAGLVLPIRTVYGSGYLFANS" FT misc_feature 26585..26917 FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain" FT misc_feature 27041..27265 FT /note="HMMPfam hit to PF00486, Transcriptional regulatory FT protein, C terminal" FT CDS complement(27283..28233) FT /transl_table=11 FT /locus_tag="BP0023" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TT94" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TT94" FT /protein_id="CAE40402.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS" FT repeat_region 27283..27310 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(27283..28335) FT misc_feature complement(27319..27852) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(27910..27975) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(28304..28335) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(28315..28650) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0024" FT /product="putative racemase (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Rhodococcus spAD45 putative FT racemase IsoG TR:Q9RBP6 (EMBL:AJ249207) (405 aa) fasta FT scores: E(): 3.3e-16, 45.370% id in 108 aa, and to FT Thermoplasma volcanium L-carnitine dehydratase TVG1215416 FT TR:BAB60328 (EMBL:AP000995) (399 aa) fasta scores: E(): FT 1.7e-14, 41.509% id in 106 aa. Similar to N-terminal FT regions of several CDSs including BP0416, BP3709, BP0253, FT BP3318, BP0199" FT /db_xref="PSEUDO:CAE40403.1" FT CDS complement(28675..29109) FT /transl_table=11 FT /locus_tag="BP0025" FT /product="conserved hypothetical protein" FT /note="Similar to Methanothermobacter thermautotrophicus FT conserved protein Mth1398 TR:O27449 (EMBL:AE000902) (133 FT aa) fasta scores: E(): 4.2e-06, 32.692% id in 104 aa, and FT to Archaeoglobus fulgidus conserved hypothetical protein FT Af0284 TR:O29957 (EMBL:AE001085) (165 aa) fasta scores: FT E(): 3.7e-05, 22.936% id in 109 aa" FT /db_xref="InterPro:IPR002878" FT /db_xref="UniProtKB/TrEMBL:Q7W0R3" FT /protein_id="CAE40404.1" FT /translation="MEMTMEQEPLNGWPQPYRLLDAQPYWDALQDEKLTYQQCVACRQS FT VWPAHSRCPHCSSDQLVWQASSGRATVYSFSTVTRGPTPVWASIVPYTVGFVEMDEGYF FT LFTQIEGPPGSIGVGDKVQVRFVRRGAQILPVFVSADLPA" FT misc_feature complement(28702..29052) FT /note="HMMPfam hit to PF01796, Domain of unknown function FT DUF35" FT CDS complement(29142..30368) FT /transl_table=11 FT /locus_tag="BP0026" FT /product="putative thiolase" FT /note="Similar to Mycobacterium tuberculosis CDC1551 FT nonspecific lipid-transfer protein mt1663 TR:AAK45933 FT (EMBL:AE007030) (402 aa) fasta scores: E(): 5.1e-14, FT 27.229% id in 415 aa, and to Pseudomonas fluorescens PhlC FT TR:Q51727 (EMBL:U41818) (398 aa) fasta scores: E(): FT 5.2e-15, 27.188% id in 320 aa" FT /db_xref="GOA:Q7W0R2" FT /db_xref="InterPro:IPR002155" FT /db_xref="UniProtKB/TrEMBL:Q7W0R2" FT /protein_id="CAE40405.1" FT /translation="MKAMAMTPKPTAAIVGMGDAYASMQDRKDPIQLAVAATHKALADA FT GITKDQVDAVFTGRSPWADKRSQWSNIFCSHMHMPVTITSEITMHGAGLNATVAMAAQM FT IAAGRAQYVLCLQSDATELFVDAVAMGAEADADPQFEIPYGPTIPALYAQAACRYFHEF FT GITEEDLADVAIANQSWAMHHPHAAKARFGSIDRAKVLSSPYVATPLRRWMCSTWGGGT FT GGALVVTSVDNARTAQDPVYVMGYGSATTHEYLGDRMNMRRCRYPSLGAFPNLTHTATA FT EAARQAYESSGLTPADIDMAQISVNFAHMGPLIMEDLGFAAKGRGMDLYRAGRTGVDGD FT LPIDTNGGWLSFGQPGISCNMDSYAEAVRQLRGNALGRAPARRPRTVLVQGSGGMLAAG FT SVTILASEL" FT CDS complement(30365..30862) FT /transl_table=11 FT /locus_tag="BP0027" FT /product="MaoC family protein" FT /note="Similar to Archaeoglobus fulgidus MaoC protein FT af2313 TR:O27971 (EMBL:AE000944) (151 aa) fasta scores: FT E(): 3.3e-19, 46.154% id in 143 aa, and to Rhodococcus FT spNCIMB 9784. fad-binding protein CampD TR:AAK50623 FT (EMBL:AF323755) (167 aa) fasta scores: E(): 2.4e-12, FT 33.562% id in 146 aa" FT /db_xref="GOA:Q7W0R1" FT /db_xref="InterPro:IPR002539" FT /db_xref="UniProtKB/TrEMBL:Q7W0R1" FT /protein_id="CAE40406.1" FT /translation="MARINNRIDQTFDEIEVGKVFRSGGRTITETDVVNFCALTGNWIE FT IHSNVQYASKTRFGKRLVQGSLTYSIVTGLIQFGLGIQANYGIDNMRFLAPVSIGDTIY FT AVCEVMRKKEKDEKYGVITFFMKAVNQDGTVVQKGEWSLLMLRRREDLDALVGASLPEV FT AA" FT misc_feature complement(30473..30832) FT /note="HMMPfam hit to PF01575, MaoC like domain" FT misc_feature complement(30611..30676) FT /note="1 probable transmembrane helix predicted for BP0027 FT by TMHMM2.0 at aa 62-84" FT CDS complement(31070..31978) FT /transl_table=11 FT /locus_tag="BP0028" FT /product="putative transcriptional regulator" FT /note="Similar to Pseudomonas aeruginosa probable FT transcriptional regulator pa0877 TR:Q9I568 (EMBL:AE004522) FT (298 aa) fasta scores: E(): 1e-17, 27.985% id in 268 aa, FT and to Rhizobium loti probable transcriptional regulator FT mlr2195 TR:Q98IY2 (EMBL:AP002999) (397 aa) fasta scores: FT E(): 3.5e-17, 29.825% id in 285 aa" FT /db_xref="GOA:Q7W0R0" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W0R0" FT /protein_id="CAE40407.1" FT /translation="MRQVDFFTLRLFLSAVEEGQIGRAALRENIAPSAATKRIQELEDV FT VGLRLLERTPKGVILSPAGEVLVRHIRQIFTNVDELRAELSAFSEGVRGEVSVASARSI FT IAPYLAHEFGAYIRDYPLVDLIVREVENAAIVQAVAQGDADIGVFAAAPALDLSGVDVM FT PYRQDRMVVVMSHGHRLAQRQSVTFEDLLSENLIVPAALHMALRTAADRLGREFEPKYG FT VTSAGVAISLAQEGLGVTIQPECLLDLKVFEHAVGVELAESWANRSIHIATARGRAAGP FT AANLLLKQLLDRPRALSSVSD" FT misc_feature complement(31535..31963) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(31829..31921) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS 32215..33006 FT /transl_table=11 FT /locus_tag="BP0029" FT /product="putative enoyl-CoA hydratase" FT /note="Similar to Deinococcus radiodurans enoyl-CoA FT hydratase, putative DR0184 TR:Q9RXX1 (EMBL:AE001881) (273 FT aa) fasta scores: E(): 8e-50, 52.209% id in 249 aa, and to FT Mycobacterium tuberculosis enoyl-CoA hydratase EchA15 or FT RV2679 or MTV010.03 TR:O53232 (EMBL:AL021186) (276 aa) FT fasta scores: E(): 6e-48, 49.621% id in 264 aa. Similar to FT BP3304, 51.331% identity in 263 aa overlap." FT /db_xref="GOA:Q7W0Q9" FT /db_xref="InterPro:IPR001753" FT /db_xref="UniProtKB/TrEMBL:Q7W0Q9" FT /protein_id="CAE40408.1" FT /translation="MRYEDFEFLLCEPQDDGVMLVTLNRPDAMNATNDRMHWELTRIWG FT VVNDDPGVKAVVVTGAGERAFSAGGDLSVVEAMSNSHETTMRVMKEASDIVYNMLACDK FT PIISAINGTAVGAGLADVSVMAEDAKLTDGHARLGVSAGDHAAIIWPILCGMSKAKYYL FT MTADFVDGKEAERIGLVTFCAPRAEVLPRSLAIAAKLARGSQTAIRATKKSLNNWMRTA FT GPAFDNSLALEMLCFLGPDVKEGLAALRDKRAPDFPSARLP" FT misc_feature 32269..32769 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT CDS 33049..34470 FT /transl_table=11 FT /locus_tag="BP0030" FT /product="conserved hypothetical protein" FT /note="Similar to Methanothermobacter thermautotrophicus FT conserved protein mth965 TR:O27046 (EMBL:AE000870) (452 aa) FT fasta scores: E(): 1.2e-26, 31.308% id in 428 aa, and to FT Agrobacterium tumefaciens Agr_l_2924p agr_l_2924 FT TR:AAK90029 (EMBL:AE008346) (448 aa) fasta scores: E(): FT 8.3e-24, 29.888% id in 445 aa" FT /db_xref="GOA:Q7W0Q8" FT /db_xref="InterPro:IPR005656" FT /db_xref="UniProtKB/TrEMBL:Q7W0Q8" FT /protein_id="CAE40409.1" FT /translation="MNAAPSPSTPPGNCPPLEQAVVRFIQDLKYEHIDAAALAGVNRLM FT RDQLALQVGISAMPWSRQLLDYALTQQRPGVSRVSASTLKMSAADAAFVNGSYGHGFEY FT DDAHGPSYSHPGSCVIPAALAIGEELGSSLQDVITAMVAGYEVYTRIGLLAAPDLLRRG FT YHPHCTLSNFGAAAVAAKLRGFDAETTLHALAIALSHTSGTTEYSSTGGSIKRIHAGLG FT TRNGMMAADMARAGITGPRAFLSGNKGFFKTFLQRPAGEAPQQRFAPGEPFQVATVWLK FT AYCACYCTHAYIDALRPYAERRGEIADIHLKITPHFNVVVGTANACAYAPTNIEHVQFS FT LPIQAALAVQGLGNGYRIHRDYLDGRVDMAPVIAMARGIRITEDPGLETRHPGKFVADV FT TVTFRDGSAEHVFVADPIGTDTNPMPEHEQDAKFMELTADALGQARARALLAALRKMDP FT TMKAADLMALCEPAP" FT repeat_region 34524..34555 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 34524..35576 FT CDS 34626..35576 FT /transl_table=11 FT /locus_tag="BP0031" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTB9" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTB9" FT /protein_id="CAE40410.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN" FT misc_feature 34884..34949 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 35007..35540 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(35545..35576) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(35573..36763) FT /transl_table=11 FT /locus_tag="BP0032" FT /product="probable transporter" FT /note="Similar to Rhodococcus fascians chloramphenicol FT resistance protein TR:Q52751 (EMBL:Z12001) (391 aa) fasta FT scores: E(): 1.6e-10, 25.193% id in 389 aa, and to FT Rhodococcus rhodochrous CmrA TR:O30679 (EMBL:AF015087) (391 FT aa) fasta scores: E(): 4.2e-12, 25.326% id in 383 aa" FT /db_xref="InterPro:IPR000600" FT /db_xref="UniProtKB/TrEMBL:Q7W0Q7" FT /protein_id="CAE40411.1" FT /translation="MSDHDASFSLKDIAVPAFGPSILYGVSNGAILPVVALTARELGAS FT LATSGLIVGLVGIGSLVSNIPAAMFTSRHGERRSMVGAAALSVVALLLCIFAGTLWMLA FT TGVFMVGMASSVFLLARQGYMIDAVPAYMRARALSTLAGTMRIGVFAGPFAGAALIHFM FT GLQGAYWVAAVAMTGAGLIAWFAPDMAPPRRRGEAAVARPRLLDVARAHRQVYLTLGLG FT ILLVSAVRASRQVVIPLWADHLGVNPATTSLIYGLVAAIDMSVFYPAGMLMDRRGRLWV FT AVPSTLLMGCALIGTSLTSGVAGFVIVAMMLGMGNGIGSGIVMTLGADAAPASGRTEFL FT GLWRLMSDLGGSLGPVALSGITALVSLAAGVAAMGGVGLAAAAVFWHWLPRGQAPR" FT misc_feature complement(join(35597..35662,35678..35743,35783..35848, FT 35861..35926,35948..36013,36053..36118,36206..36262, FT 36275..36340,36404..36505,36551..36616,36653..36718)) FT /note="11 probable transmembrane helices predicted for FT BP0032 by TMHMM2.0 at aa 15-37, 49-71, 86-120, 141-163, FT 167-186, 215-237, 250-272, 279-301, 305-327, 340-362 and FT 367-389" FT misc_feature complement(35600..36730) FT /note="HMMPfam hit to PF00083, Sugar (and other) FT transporter" FT misc_feature complement(35726..35761) FT /note="ScanRegExp hit to PS00213, Lipocalin signature." FT misc_feature complement(35756..35836) FT /note="ScanRegExp hit to PS01125, ROK family signature." FT CDS 37013..37924 FT /transl_table=11 FT /gene="glyQ" FT /gene_synonym="glyS(a)" FT /locus_tag="BP0033" FT /product="glycyl-tRNA synthetase alpha chain" FT /EC_number="6.1.1.14" FT /note="Similar to Escherichia coli glycyl-tRNA synthetase FT alpha chain GlyQ or GlyS(a) or B3560 SW:SYGA_ECOLI (P00960) FT (303 aa) fasta scores: E(): 1.9e-90, 74.658% id in 292 aa, FT and to Neisseria meningitidis (serogroups A and B) FT glycyl-tRNA synthetase alpha chain GlyQ or nma0521 or FT nmb1932 TR:Q9JRC6 (EMBL:AL162753) (301 aa) fasta scores: FT E(): 2.7e-96, 75.748% id in 301 aa" FT /db_xref="GOA:Q7W0Q6" FT /db_xref="HSSP:1J5W" FT /db_xref="InterPro:IPR006194" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0Q6" FT /protein_id="CAE40412.1" FT /translation="MLTFQQIILTLQDYWDKQGCALLQPYDMEVGAGTSHTATFLRAIG FT PEPWRAAYVQPSRRPKDGRYGENPNRLQHYYQYQVVLKPAPPEILDLYIGSLKALGIDP FT TQHDIRFVEDDWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLDCTPTTGEITYGLE FT RLAMYLQDVESVYDLVWTEGANGNRVYYRDVFHQNEVEQSTYNFEHASADMLFAHFNDY FT EAEAKRLMDVPLALPAYEAALKAAHTFNMLDARGAISVTERAAYIGRIRNLSRAVAQAY FT YDSRERLGFPMLAGRKAAGEAA" FT misc_feature 37022..37888 FT /note="HMMPfam hit to PF02091, Glycyl-tRNA synthetase alpha FT subunit" FT misc_feature 37487..37516 FT /note="ScanRegExp hit to PS00339, Aminoacyl-transfer RNA FT synthetases class-II signature 2." FT CDS 37926..40064 FT /transl_table=11 FT /gene="glyS" FT /gene_synonym="glyS(b)" FT /locus_tag="BP0034" FT /product="glycyl-tRNA synthetase beta chain" FT /EC_number="6.1.1.14" FT /note="Similar to Escherichia coli glycyl-tRNA synthetase FT beta chain GlyS or GlyS(b) or B3559 SW:SYGB_ECOLI (P00961) FT (688 aa) fasta scores: E(): 3e-69, 40.056% id in 709 aa, FT and to Pseudomonas aeruginosa glycyl-tRNA synthetase beta FT chain GlyS or PA0008 TR:Q9I7B8 (EMBL:AE004440) (684 aa) FT fasta scores: E(): 6.1e-70, 44.600% id in 713 aa" FT /db_xref="GOA:Q7W0Q5" FT /db_xref="InterPro:IPR008909" FT /db_xref="UniProtKB/TrEMBL:Q7W0Q5" FT /protein_id="CAE40413.1" FT /translation="MTTDIRPLLIELFTEELPPKALQKLGQAFAEGVRATLARHHLLAD FT GCAVEPFATPRRLAVRLSAVLAQAPEQAYAEKLMPVKVGLDANGQPTAALAKKLAAKGL FT EGLDPATLERESDGKQEYLVARGTAAGAQLAVGLQEGLDAAIDGLPIPKVMRYQLADGQ FT TTVKFVRPAHGLVALFGADIVPIAALGLQAGRATQGHRFQSNGAIELATAQGYEADLAE FT RGRVIASFEARRAEISRLLDEHAQRLGATLGDDPEVTALLDEVTALVEHPTVYVGQFEE FT QFLQVPQECLILTMRLNQKYFPLFDPASGKLTHRFLIVSNMQVADPANIVEGNQRVVRP FT RLADAQFFFETDRKTPLAARVEQLGSIVYHNKLGTQLERVERVRAIARGIATALGGDAA FT HCDRAALLAKADLGSNMVGEFPELQGIMGAYYAQGDGEPADVVTALRTQYRNRYDAPVD FT AATLTAATLFIAERIETLVGIWSIGLAPTGERDPFGLRRAALGLISAFEQLAAGGWLKV FT SEDGPLSLDGLLALAAQAFPDGKIGADTLAEVRAFIYERYRNQLIGEHDRNAVEAVIAL FT APPLHQVAARVRAVAAFAQLPAAASLAAANKRIGNLLKKAEGEIGAVDAALLQDPAEKA FT LAEAVAQLRPQARAQLQAGDFAASLATLAQAREPVDAFFADVMVMADDAALRANRLALL FT GQLHGLMNQVADISRLAQ" FT misc_feature 37947..40055 FT /note="HMMPfam hit to PF02092, Glycyl-tRNA synthetase beta FT subunit" FT CDS 40061..40600 FT /transl_table=11 FT /locus_tag="BP0035" FT /product="putative haloacid dehalogenase-like hydrolase" FT /note="Similar to Pseudomonas fluorescens hisb-like protein FT TR:Q9F729 (EMBL:AF286536) (213 aa) fasta scores: E(): FT 3.1e-37, 57.062% id in 177 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa0006 pa0006 TR:Q9I7C0 FT (EMBL:AE004440) (178 aa) fasta scores: E(): 8.4e-38, FT 58.286% id in 175 aa" FT /db_xref="GOA:Q7W0Q4" FT /db_xref="InterPro:IPR006543" FT /db_xref="UniProtKB/TrEMBL:Q7W0Q4" FT /protein_id="CAE40414.1" FT /translation="MKLIILDRDGVVNQDSDAFVKSPDEWIALPGSLQAIARLTQADWT FT VVLATNQSGLARGLFDTATLNAIHDKMHRALAQMGGVVDAIFMCPHGPDDGCACRKPLP FT GMYRDIARRYDVDLAGVPAVGDSLRDLQAAAQAGCAPWLVQTGNGRKTLAQGGLPEGTR FT VCEDLAAVAEQLLQEA" FT misc_feature 40061..40501 FT /note="HMMPfam hit to PF00702, haloacid dehalogenase-like FT hydrolase" FT CDS 40604..41332 FT /transl_table=11 FT /locus_tag="BP0036" FT /product="probable acyltransferase" FT /note="Similar to Neisseria meningitidis lysophosphatidic FT acid acyltransferase homolog NlaB or NMA0404 TR:Q9XDL6 FT (EMBL:AF036242) (247 aa) fasta scores: E(): 4.2e-32, FT 41.277% id in 235 aa, and to Pseudomonas aeruginosa FT probable acyltransferase PA0005 TR:Q9I7C1 (EMBL:AE004440) FT (257 aa) fasta scores: E(): 2.1e-37, 42.437% id in 238 aa" FT /db_xref="GOA:Q7W0Q3" FT /db_xref="InterPro:IPR002123" FT /db_xref="UniProtKB/TrEMBL:Q7W0Q3" FT /protein_id="CAE40415.1" FT /translation="MAWLRSALYALFLIVTVIPYAFACILWAPLPLHWRYRLTVGWPRL FT AIWGARVICGIRWRIKGAENLPDGPAILLSKHQSAWETLFFPAHMPREVCFVYKKELHM FT VPFFGWGLALLRMIPIDRAKGRDAFEQVVRQGQVRLDEGRWPLLFPEGTRVPPGKTGRF FT KMGGALLASRTGARIIPVAHNAGECWRRNAFVKRPGLITVSIGPAIESQDVAPEVLNAK FT VQAWIEGEMRVLNPERYGQA" FT misc_feature 40604..40672 FT /note="Signal peptide predicted for BP0036 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.995 between residues 23 and 24" FT misc_feature 40622..40690 FT /note="1 probable transmembrane helix predicted for BP0036 FT by TMHMM2.0 at aa 7-29" FT misc_feature 40790..41305 FT /note="HMMPfam hit to PF01553, Acyltransferase" FT CDS 41319..42212 FT /transl_table=11 FT /locus_tag="BP0037" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium loti Mlr5068 protein TR:Q98CP0 FT (EMBL:AP003005) (252 aa) fasta scores: E(): 3.9e-08, FT 28.458% id in 253 aa, and to Rhizobium meliloti conserved FT hypothetical protein smc02768 TR:CAC41413 (EMBL:AL591782) FT (251 aa) fasta scores: E(): 5.6e-08, 25.306% id in 245 aa" FT /db_xref="InterPro:IPR002725" FT /db_xref="UniProtKB/TrEMBL:Q7W0Q2" FT /protein_id="CAE40416.1" FT /translation="MAKPDQLELLFDVAPPADPASAAPRKTPKARPAPPAPAAIATPCP FT DPLPPGARWREVHTEQQPIGFVLLRSRRRSIGFVVADDGLRVTAPNWVTLEQIDDAVRE FT KARWILAKLRDWHARKEQLAMAHTRWQAGGELPYLGKRIVLGLGAERRQACLSGDADAP FT CDGDTLWLALPVDADQARIRDAAQAWLQQRAGAWFGARLAHFLQLTGLRIRRWRLSSAA FT TRWGSCTSDGNIMLNWRLIHFAPAIIDYVIAHELAHLREMNHSQDFWTEVGHILPGFED FT AKNVLRRHDPATLPQF" FT misc_feature 41511..42194 FT /note="HMMPfam hit to PF01863, Protein of unknown function FT DUF45" FT CDS 42283..42678 FT /transl_table=11 FT /gene="gloA" FT /locus_tag="BP0038" FT /product="lactoylglutathione lyase" FT /EC_number="4.4.1.5" FT /note="Similar to Escherichia coli lactoylglutathione lyase FT GloA or B1651 or Z2669 or ECS2360 SW:LGUL_ECOLI (Q59384) FT (135 aa) fasta scores: E(): 5.1e-34, 67.939% id in 131 aa, FT and to Neisseria meningitidis lactoylglutathione lyase GloA FT or NMA2147 or NMB0340 SW:LGUL_NEIMA (O33393) (138 aa) fasta FT scores: E(): 1.2e-42, 78.626% id in 131 aa" FT /db_xref="GOA:Q7W0Q1" FT /db_xref="HSSP:1F9Z" FT /db_xref="InterPro:IPR018146" FT /db_xref="UniProtKB/TrEMBL:Q7W0Q1" FT /protein_id="CAE40417.1" FT /translation="MRLLHTMLRVGNLDKSIDFYTSVLGMRELRRKDYPDGRFTLAFVG FT YQDESEAAAIELTHNWDTEKYDLGTGYGHIAIEVDNAYEACDKVKEKGGKVTREAGPMK FT HGTTVIAFVEDPDGYKIEFIQKKGRND" FT misc_feature 42295..42360 FT /note="ScanRegExp hit to PS00934, Glyoxalase I signature FT 1." FT misc_feature 42307..42660 FT /note="HMMPfam hit to PF00903, Glyoxalase/Bleomycin FT resistance protein/Dioxygenase superfamily" FT misc_feature 42487..42525 FT /note="ScanRegExp hit to PS00935, Glyoxalase I signature 2. FT Confirmed by InterPro eMOTIF pattern match." FT CDS 42688..43218 FT /transl_table=11 FT /locus_tag="BP0039" FT /product="peptide deformylase" FT /note="Similar to Leptospira interrogans peptide FT deformylase Pdf TR:AAK70806 (EMBL:AY040678) (178 aa) fasta FT scores: E(): 2.1e-30, 50.000% id in 168 aa, and to FT Pseudomonas aeruginosa probable peptide deformylase PA1122 FT TR:Q9I4L3 (EMBL:AE004542) (147 aa) fasta scores: E(): FT 9.9e-34, 69.630% id in 135 aa. Also similar to BP0552, FT 40.881% identity (44.218% ungapped) in 159 aa overlap." FT /db_xref="GOA:Q7W0Q0" FT /db_xref="InterPro:IPR000181" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0Q0" FT /protein_id="CAE40418.1" FT /translation="MIHAILKMGDPRLLRVAAPVERYDTPELRALIDDMFETMAHAQGV FT GLAAPQIGVDLQLVIFGFERNDRYPDAPAVPRTILCNPVIEPLSDEMEDGWEGCLSVPG FT LRGLVPRYRHIRYSGYDPAGQRIEREAEGFHARVVQHECDHLIGRLYPTRIRDLTKFGY FT TEVLFPEMDPNAD" FT misc_feature 42697..43140 FT /note="HMMPfam hit to PF01327, Polypeptide deformylase" FT CDS complement(43347..43559) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0040" FT /product="C-terminal region of a putative oxidoreductase FT (Pseudogene)" FT /note="Pseudogene. This CDS is the C-terminal region of FT BP3335 which was disrupted by the insertion of IS481 FT element." FT repeat_region 43562..43593 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 43562..44614 FT CDS 43664..44614 FT /transl_table=11 FT /locus_tag="BP0041" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA7" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA7" FT /protein_id="CAE40420.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHR" FT misc_feature 43922..43987 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 44045..44578 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(44583..44614) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(join(44605..44922,44924..45163)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0042" FT /product="putative lipase (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element following codon 183, and contains a FT frameshift mutation following codon 80. The frameshift FT occurs within a homopolymeric tract of (C)7. The sequence FT has been checked and believed to be correct. Similar to FT Homo sapiens monoglyceride lipase TR:CAC43316 FT (EMBL:AJ270950) (303 aa) fasta scores: E(): 2.3e-08, FT 36.709% id in 158 aa, and to Streptomyces coelicolor FT putative lipase sc6f7.19C TR:Q9KZC3 (EMBL:AL353870) (269 FT aa) fasta scores: E(): 4.6e-11, 40.816% id in 147 aa" FT /db_xref="PSEUDO:CAE40421.1" FT variation complement(44924..44930) FT /note="(C)7 in pertussis; (C)6 in parapertussis" FT CDS 45201..45749 FT /transl_table=11 FT /locus_tag="BP0043" FT /product="putative exported protein" FT /note="Similar to the N-terminal region of Escherichia coli FT resolvase rsvB TR:Q9S0Z7 (EMBL:AB024946) (269 aa) fasta FT scores: E(): 5.2, 30.357% id in 112 aa" FT /db_xref="UniProtKB/TrEMBL:Q7W0P9" FT /protein_id="CAE40422.1" FT /translation="MISTLFRFMLKKRVRILWQAGCAALLLAACSPSYNWREIDVADGR FT VRAAFPGRVQTDTRDLALAEVPLRFSLTSARVEQAVFAIGHAPLPPEVAADPARRRALG FT EALARSLYANLGVQPPDPLPAPGADIEIHAPPGERDDWLLARVWATDDMLIEAVAAGTR FT QTLPAERAREFIDAVELRR" FT misc_feature 45201..45305 FT /note="Signal peptide predicted for BP0043 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.989) with cleavage site FT probability 0.621 between residues 35 and 36" FT misc_feature 45258..45290 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS complement(45721..45957) FT /transl_table=11 FT /locus_tag="BP0044" FT /product="transcriptional regulator" FT /note="Similar to the C-terminal regions of Vibrio FT anguillarum transcriptional activator protein VanR FT SW:VANR_VIBAN (P74946) (240 aa) fasta scores: E(): 6.7e-09, FT 48.611% id in 72 aa, and to Rhizobium loti transcriptional FT regulator mlr5637 TR:Q98BC5 (EMBL:AP003007) (243 aa) fasta FT scores: E(): 5.4e-08, 52.459% id in 61 aa" FT /db_xref="GOA:Q7W0P8" FT /db_xref="HSSP:1FSE" FT /db_xref="InterPro:IPR000792" FT /db_xref="UniProtKB/TrEMBL:Q7W0P8" FT /protein_id="CAE40423.1" FT /translation="MPQRTTLTPRELDCLHWSALGKTSWETARILGIAARTVDFHLANA FT CAKLGVANRRAAVARAVQCGLLPALTAAAPPHR" FT misc_feature complement(45751..45948) FT /note="HMMPfam hit to PF00196, Bacterial regulatory FT proteins, luxR family" FT misc_feature complement(45829..45894) FT /note="Predicted helix-turn-helix motif with score 1061 FT (+2.80 SD) at aa 51-72, sequence KTSWETARILGIAARTVDFHLA" FT CDS 46085..46978 FT /transl_table=11 FT /locus_tag="BP0045" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0188 TR:Q9I6U6 (EMBL:AE004456) (293 aa) fasta FT scores: E(): 2e-25, 35.172% id in 290 aa, and to Vibrio FT cholerae hypothetical protein Vc1229 vc1229 TR:Q9KSM7 FT (EMBL:AE004202) (291 aa) fasta scores: E(): 5.7e-15, FT 31.034% id in 290 aa" FT /db_xref="GOA:Q7W0P7" FT /db_xref="InterPro:IPR004776" FT /db_xref="UniProtKB/TrEMBL:Q7W0P7" FT /protein_id="CAE40424.1" FT /translation="MLAVVQFYWSAVVLLLPLLACAGIGAYWAKRDYPFGGTFITMLVT FT TVTTPALVFHTFVTTQLDDRALLAIAGASLLALLACALACAGLLRLFGLPVRTLLPTAF FT VPNAGNLGLPVSQLAFGDAGLSAAVAFFAVNSFVTHTIAVRMLPGANTPGSWKSPVLLA FT SVAAVTLRALDIPVPDWLVATSRMLGAVTVPLMLLSLGHALALIPANGMRAGAVVAALR FT LAVGLAAGYAVVWLLGLPDLLAGALALQMAMPCAVVSYMYARRYTDVGDIAAGAVLVST FT VVFLLLAPALLWFTRQ" FT misc_feature 46085..46171 FT /note="Signal peptide predicted for BP0045 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.771) with cleavage site FT probability 0.411 between residues 29 and 30" FT misc_feature join(46103..46171,46199..46258,46295..46363,46421..46489, FT 46643..46711,46724..46792,46811..46870,46898..46966) FT /note="8 probable transmembrane helices predicted for FT BP0045 by TMHMM2.0 at aa 7-29, 39-58, 71-93, 113-135, FT 187-209, 214-236, 243-262 and 272-294" FT CDS complement(join(46982..47479,47475..47984)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0046" FT /product="probable malate/L-lactate dehydrogenase FT (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 169. The frameshift occurs within FT a (GCCGC)2 tract. The sequence has been checked and FT believed to be correct. Similar to Methanococcus jannaschii FT malate dehydrogenase I Mdh or MJ1425 SW:MDH1_METJA (Q58820) FT (344 aa) fasta scores: E(): 2.6e-26, 31.818% id in 330 aa, FT and to Methanothermus fervidus malate dehydrogenase Mdh FT SW:MDH_METFE (P16142) (339 aa) fasta scores: E(): 3.8e-26, FT 30.247% id in 324 aa" FT /db_xref="PSEUDO:CAE40425.1" FT misc_feature complement(join(46997..47479,47475..47981)) FT /note="HMMPfam hit to PF02615, Malate/L-lactate FT dehydrogenase" FT variation complement(47476..47485) FT /note="(GCCGC)2 in pertussis; (GCCGC)3 in parapertussis" FT CDS 48148..49395 FT /transl_table=11 FT /gene="metX" FT /locus_tag="BP0047" FT /product="homoserine O-acetyltransferase" FT /EC_number="2.3.1.31" FT /note="Similar to Pseudomonas putida FT homoserine-ortho-acyltransferase MetX TR:AAK49778 FT (EMBL:AY028975) (358 aa) fasta scores: E(): 4.6e-66, FT 55.108% id in 323 aa, and to Neisseria meningitidis FT homoserine O-acetyltransferase MetX or nmb0940 FT SW:METX_NEIMB (Q9JZQ5) (379 aa) fasta scores: E(): 1.7e-88, FT 58.839% id in 379 aa" FT /db_xref="GOA:Q7W0P6" FT /db_xref="InterPro:IPR006296" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0P6" FT /protein_id="CAE40426.1" FT /translation="MTNPVLNPALPAMAAAPVAATPSAVGSAGIVAPVFLRFDEPLPLA FT SGQTLNGYELAIETYGTLNAQRTNAVLVCHALNASHHVAGVSADNPKDVGWWDNMVGPG FT KPVDTNRYFVIGVNNLGSCFGSTGPASINPATGRPWGAAFPVLTVEDWVRAQARVADHF FT GIERFAAVMGGSLGGMQALSWAITCPQRVANCVVVASTPRLSAQNIGFNEVARRAIITD FT PDFHGGDYYAHGTVPGRGLSVARMIGHITYLSDDDMAEKFGRTRREPAADGAYRYGYDV FT EFEVESYLRYQGEKFSRYFDANTYLLITRALDYFDPARATGGDLARALAPATADFLLVS FT FSTDWRFPPERSREMVRALLKNGSPVTYAEIDAPHGHDAFLLDDARYHAVVRGYYERIA FT RELGLNGAVAPEGNSA" FT misc_feature 48148..48225 FT /note="Signal peptide predicted for BP0047 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.992) with cleavage site FT probability 0.412 between residues 26 and 27" FT misc_feature 48481..49332 FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold" FT CDS 49392..50006 FT /transl_table=11 FT /locus_tag="BP0048" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nmb0939 TR:Q9JZQ6 (EMBL:AE002445) (193 aa) fasta FT scores: E(): 8.9e-38, 56.085% id in 189 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa0389 FT TR:Q9I6A6 (EMBL:AE004476) (206 aa) fasta scores: E(): FT 6.1e-35, 48.705% id in 193 aa" FT /db_xref="InterPro:IPR010743" FT /db_xref="UniProtKB/TrEMBL:Q7W0P5" FT /protein_id="CAE40427.1" FT /translation="MSPVSARFEPAALRPDLARIAGWIEPGSRVLDLGCGDGALLAYLR FT DHRQVRGAGVEIDDNYVIACVQRGVEVIQQNLEDGLALFDDQQFDTVVLSQTLQSMHRT FT EHILREMARVARHGVVSFPNFGYWPHGWSILRGRMPVTGQMPYQWYNTPNIHLCTLRDF FT EDLAGTLGLRILQRATFNEGREVRVFPSWRSTLALYRFAAS" FT repeat_region 50040..50071 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 50040..51092 FT CDS 50142..51092 FT /transl_table=11 FT /locus_tag="BP0049" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA4" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA4" FT /protein_id="CAE40428.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 50400..50465 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 50523..51056 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(51061..51092) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 51180..52391 FT /transl_table=11 FT /gene="ampG" FT /locus_tag="BP0050" FT /product="putative integral membrane signal transducer FT protein" FT /note="Similar to Escherichia coli AmpG protein or b0433 or FT z0536 or ecs0487 SW:AMPG_ECOLI (P36670) (491 aa) fasta FT scores: E(): 2.6e-88, 61.168% id in 394 aa, and to FT Neisseria meningitidis putative integral membrane signal FT transducer protein nma2127 TR:Q9JSU7 (EMBL:AL162758) (427 FT aa) fasta scores: E(): 1.9e-44, 42.711% id in 391 aa" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q7W0P4" FT /protein_id="CAE40429.1" FT /translation="MAPLLVLGFASGLPLALSSGTLQAWATVENVSLQSIGFLTLAGTA FT YTLKFLWAPLIDRYVPPFLGRRRGWMLLTQVLLAAAIMVMGMLSPGSALLPLALVAVLV FT AFLSASQDIAFDAYSTDVLRQEERGAGAAMRVMGYRLAMIVSGGLALIVADRWLGWGNT FT YVLMGGLMLACALGTLWAPEPERPANPPRDLGAAVVEPFREFFSRRGAIDMLLLIVLYK FT LGDAFAGALSTTFLLRGAGFSATEVGTVNKVLGLAATIVGALAGGSIMTRWGLYRSLMA FT FGLLQAVSNLGYWLIAVSPKNLYLMGLAVGVENLCGGLGTASFVALLMAMCRQQFSATQ FT FALLSALAAVGRTYLAGPLTPVLVEWLDWPGFFIVTVLIALPGLWLLRLRRNVIDELDA FT QTAR" FT misc_feature 51180..51257 FT /note="Signal peptide predicted for BP0050 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.998) with cleavage site FT probability 0.441 between residues 26 and 27" FT misc_feature join(51192..51260,51288..51347,51384..51443,51456..51524, FT 51585..51641,51651..51719,51822..51890,51918..51986, FT 51999..52067,52095..52163,52200..52268,52278..52346) FT /note="12 probable transmembrane helices predicted for FT BP0050 by TMHMM2.0 at aa 5-27, 37-56, 69-88, 93-115, FT 136-154, 158-180, 215-237, 247-269, 274-296, 306-328, FT 341-363 and 367-389" FT CDS join(52503..53204,53206..53565) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0051" FT /product="outer membrane porin protein precursor FT (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 234. The frameshift occurs within FT a homopolymeric tract of (T)3. The sequence has been FT checked and believed to be correct. Similar to Bordetella FT pertussis outer membrane porin protein precursor FT SW:OMP_BORPE (Q04064) (385 aa) fasta scores: E(): 1.2e-13, FT 31.726% id in 394 aa, and to Burkholderia cepacia porin FT protein OpcP1 TR:Q45106 (EMBL:D63823) (361 aa) fasta FT scores: E(): 1.3e-21, 33.073% id in 384 aa" FT /db_xref="PSEUDO:CAE40430.1" FT misc_feature 52503..52562 FT /note="Signal peptide predicted for BP0051 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 20 and 41" FT misc_feature 52512..52580 FT /note="1 probable transmembrane helix predicted for BP0051 FT by TMHMM2.0 at aa 23-45" FT misc_feature 52656..52850 FT /note="HMMPfam hit to PF00267, Gram-negative porin" FT variation 53202..53204 FT /note="(T)3 in pertussis; TTCAT in parapertussis and FT bronchiseptica" FT CDS complement(53623..54357) FT /transl_table=11 FT /locus_tag="BP0053" FT /product="putative aspartate/glutamate racemase" FT /note="Similar to Desulfurococcus sp aspartate racemase FT TR:P71164 (EMBL:D84067) (235 aa) fasta scores: E(): FT 8.8e-20, 34.529% id in 223 aa, and to Pyrococcus abyssi FT aspartate racemase RacD-1 or PAB0912 TR:Q9UYY1 FT (EMBL:AJ248287) (228 aa) fasta scores: E(): 2.3e-20, FT 32.479% id in 234 aa. Its C-terminus is similar to BP1272, FT 55.140% identity (55.140% ungapped) in 107 aa overlap." FT /db_xref="GOA:Q7W0P3" FT /db_xref="HSSP:1JFL" FT /db_xref="InterPro:IPR018187" FT /db_xref="UniProtKB/TrEMBL:Q7W0P3" FT /protein_id="CAE40431.1" FT /translation="MPSDDDKQFEGRFLGVLGGMGPMAGASFMQRLVALTEAACDQQHV FT PAILWNDPRVPDRPAGQSGQGADPLPWMRHGIRRLEQAGATAIAIPCNTAHVWYPQLAQ FT SASVPVLHIVEAVLDDLRRQGIHAGRVGLLATATTLRLGLYQHEMLAQGYEPVVPPVDL FT IDGLCAQSIRLVKQNLLPQALPPALACIDSLRAMGVDAIVLGCTELPLALPHALRAELG FT VAMTDSIDALALAGLGWYRRGG" FT misc_feature complement(53644..54330) FT /note="HMMPfam hit to PF01177, Asp/Glu/Hydontoin racemase" FT misc_feature complement(54067..54093) FT /note="ScanRegExp hit to PS00923, Aspartate and glutamate FT racemases signature 1." FT CDS complement(54363..54953) FT /pseudo FT /transl_table=11 FT /gene="gltL" FT /locus_tag="BP0054" FT /product="glutamate/aspartate transport ATP-binding protein FT (pseudogene)" FT /note="Pseudogene. Similar to Escherichia coli FT glutamate/aspartate transport ATP-binding protein GltL or FT b0652 or z0802 or ecs0691 SW:GLTL_ECOLI (P41076) (241 aa) FT fasta scores: E(): 4e-26, 60.744% id in 242 aa, and to FT Pseudomonas aeruginosa probable ATP-binding component of FT ABC transporter pa1339 TR:Q9I405 (EMBL:AE004563) (244 aa) FT fasta scores: E(): 3.5e-28, 61.066% id in 244 aa. This CDS FT contains an internal deletion relative to its orthologues. FT Similar to several B. pertussis CDSs: BP1181, P3828, FT BP1534, BP1855, BP1575, BP1362, BP0768, and BP1510." FT /db_xref="PSEUDO:CAE40432.1" FT misc_feature complement(54462..54875) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(54645..54689) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(54831..54854) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(54978..55667) FT /transl_table=11 FT /gene="gltK" FT /locus_tag="BP0055" FT /product="glutamate/aspartate transport system permease FT protein" FT /note="Similar to Escherichia coli glutamate/aspartate FT transport system permease protein GltK or b0653 or z0803 or FT ecs0692 SW:GLTK_ECOLI (P41075) (224 aa) fasta scores: E(): FT 1.9e-38, 51.339% id in 224 aa, and to Pseudomonas FT aeruginosa probable permease of ABC transporter pa1340 FT TR:Q9I404 (EMBL:AE004563) (222 aa) fasta scores: E(): FT 1.7e-37, 52.915% id in 223 aa. Similar to BP0767, 56.696% FT identity in 224 aa overlap" FT /db_xref="GOA:Q7W0P2" FT /db_xref="InterPro:IPR010065" FT /db_xref="UniProtKB/TrEMBL:Q7W0P2" FT /protein_id="CAE40433.1" FT /translation="MNEFDFDVIGRSLGYLFRDGMVFTLKLTFLSTAMGLALGTLLAMC FT RLSGIKPLSAVAAAYVNGLRALPLILVIFWFYFLVPYIGGWLTGAGRPLQVGGFTSALI FT TFTLFEAAYFCEIMRAGIQSIPRGQTSAAYAIGLNYWQTMAYVVLPQALRNMAPVLLTQ FT TIVLFQDTSLVYVLSLTDFLGAGINVAQRDNRLVEMYLFVAAVYFVMSFAASRFVHYLQ FT QRNTMAA" FT misc_feature complement(join(55014..55079,55101..55166,55212..55277, FT 55317..55382,55413..55478,55542..55607)) FT /note="6 probable transmembrane helices predicted for FT BP0055 by TMHMM2.0 at aa 20-42, 63-85, 95-117, 130-152, FT 167-189 and 196-218" FT misc_feature complement(55092..55307) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT CDS complement(55664..56458) FT /transl_table=11 FT /gene="gltJ" FT /locus_tag="BP0056" FT /product="glutamate/aspartate transport system permease FT protein" FT /note="Similar to Escherichia coli glutamate/aspartate FT transport system permease protein GltJ or b0654 FT SW:GLTJ_ECOLI (P41074) (246 aa) fasta scores: E(): 1.6e-40, FT 42.623% id in 244 aa, and to Pseudomonas aeruginosa FT probable permease of ABC transporter PA1341 TR:Q9I403 FT (EMBL:AE004563) (248 aa) fasta scores: E(): 6e-44, 47.737% FT id in 243 aa. Similar to BP0766 57.759% identity (58.515% FT ungapped) in 232 aa overlap" FT /db_xref="GOA:Q7W0P1" FT /db_xref="InterPro:IPR010065" FT /db_xref="UniProtKB/TrEMBL:Q7W0P1" FT /protein_id="CAE40434.1" FT /translation="MPSRLRSLDTTMNYNWNWHIFLEMSPTGGIYLGTLLTGMAWTLGT FT AALAWILALGIGIVVGVARTTQSKWARILGATYVEFFRNIPLLVQMFLWYFVVPEILPV FT QLGDAIKSIPPPWGIFIPAVLCLGFYTSSRVAEQVRAGIESRPARQRMAATALGMRPSQ FT VYRYVLLPTSFRIILPPLTSELLNLIKNTSVAFTIGLLELVGAARSMQEFSFQVFEAFA FT GATLCYFLLNLIVLRAMRYIETRLAVPGFIGPVSATTKLAPT" FT misc_feature complement(join(55751..55807,55838..55903,56069..56119, FT 56165..56230,56270..56320,56333..56398)) FT /note="6 probable transmembrane helices predicted for FT BP0056 by TMHMM2.0 at aa 20-42, 46-63, 76-98, 113-130, FT 185-207 and 217-236" FT misc_feature complement(55802..56035) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature complement(55952..56017) FT /note="Predicted helix-turn-helix motif with score 1318 FT (+3.68 SD) at aa 148-169, sequence ARQRMAATALGMRPSQVYRYVL" FT CDS complement(56505..57404) FT /transl_table=11 FT /locus_tag="BP0057" FT /product="amino-acid ABC transporter binding protein FT precursor" FT /note="Similar to Escherichia coli amino-acid ABC FT transporter binding protein precursor YbeJ or b0655 FT SW:YBEJ_ECOLI (P37902) (302 aa) fasta scores: E(): 2.3e-48, FT 45.263% id in 285 aa, and to Pseudomonas aeruginosa FT probable binding protein component of ABC transporter FT PA1342 TR:Q9I402 (EMBL:AE004563) (302 aa) fasta scores: FT E(): 3.4e-51, 48.658% id in 298 aa. Similar to BP0765 FT 51.325% identity (52.013% ungapped) in 302 aa overlap" FT /db_xref="GOA:Q7W0P0" FT /db_xref="InterPro:IPR001638" FT /db_xref="UniProtKB/TrEMBL:Q7W0P0" FT /protein_id="CAE40435.1" FT /translation="MKISTVFFAALVGVAASAPAHAEGRLDKIKSSGTITIGHRDASIP FT FSYLDDKQKPIGYSMEICEKAVEAIKAKLGMAQIKVNLVPVTSSTRIPLVANGTVDLVC FT GSATNTVERQQQVAFAPTTFVTATRFAAKKSSNLKKLDDMKGKTVVSTAGTSNIRWLTQ FT ANEKDSLDMRIIPTKDHPAAMLTVANGRAAAFFMDDVLLAGLVATERKPDEWMISEDTY FT TVEPYALILPKDDPAFKKVVDDTVTGMMRDGSLAKLYKKWFESPIPPRNVNLHLPMSAA FT LQRVIANPTDSADPATYR" FT misc_feature complement(56610..57302) FT /note="HMMPfam hit to PF00497, Bacterial extracellular FT solute-binding proteins, family 3" FT misc_feature complement(57339..57404) FT /note="Signal peptide predicted for BP0057 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 22 and 23" FT CDS complement(57498..58448) FT /transl_table=11 FT /locus_tag="BP0058" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTC0" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTC0" FT /protein_id="CAE40436.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN" FT repeat_region 57498..57529 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(57498..58550) FT misc_feature complement(57534..58067) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(58125..58190) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(58519..58550) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS join(58550..58981,58983..59102) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0059" FT /product="regulatory protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Thiobacillus denitrificans FT regulatory protein CbbR TR:Q9APD4 (EMBL:AF307090) (316 aa) FT fasta scores: E(): 0.00013, 28.148% id in 135 aa, and to FT Streptomyces coelicolor putative LysR-family FT transcriptional regulatory protein scm1.22C TR:Q9RD21 FT (EMBL:AL133422) (301 aa) fasta scores: E(): 0.00026, FT 29.448% id in 163 aa" FT CDS complement(59249..60475) FT /transl_table=11 FT /locus_tag="BP0060" FT /product="conserved hypothetical protein" FT /note="Similar to Caulobacter crescentus hypothetical FT protein Cc2770 TR:Q9A4R0 (EMBL:AE005942) (435 aa) fasta FT scores: E(): 1.6e-10, 28.947% id in 418 aa, and to Erwinia FT amylovora hypothetical 47.8 kDa protein TR:Q9F814 FT (EMBL:AF264948) (427 aa) fasta scores: E(): 2.6e-05, FT 28.453% id in 362 aa" FT /db_xref="InterPro:IPR012894" FT /db_xref="UniProtKB/TrEMBL:Q7W0N9" FT /protein_id="CAE40438.1" FT /translation="MATKSLRRQDLEVHLGSTGQVVGRLYLGSGKRSAFSYDERWLRDA FT RFFTLSPDLLPVLSVQHPQEVFFRALEDTAPDSWGERVIRRAHARLRQQDGETPPLEPV FT DFLMWVDDEARVGALRLFDPHAKVYLRSGATPGHVPPLVELDKVVQAARALEAGTETAR FT DLQYLLGQGTSLGGARPKSSVRDTDGRLALGKFPSQADRRDVIRGEVLAMHLAAKAGIK FT VAAARVELIGGTAVAIIRRFDRTDDGGRIPYVSAATMLQSDGRDTVHAYTELVDVLLRE FT GADPIADIHQLWRRLVLNFLICNTDDHLRNTGFLYDSRNHGWRLSPAFDLNPMPGDRRE FT SKTWLTEDSGPIESRDMLMEGAPYFRLAAEEAAAIWTEVAQAVGSWRVVARGLGMQGTD FT LVDFEPAFA" FT CDS complement(60475..60894) FT /transl_table=11 FT /locus_tag="BP0061" FT /product="putative DNA-binding protein" FT /note="Similar to Caulobacter crescentus transcriptional FT regulator Cro/ci family cc2771 TR:Q9A4Q9 (EMBL:AE005942) FT (119 aa) fasta scores: E(): 0.001, 36.458% id in 96 aa, and FT to Bradyrhizobium japonicum Id619 TR:Q9AN22 (EMBL:AF322013) FT (83 aa) fasta scores: E(): 0.11, 34.328% id in 67 aa" FT /db_xref="GOA:Q7W0N8" FT /db_xref="InterPro:IPR001387" FT /db_xref="UniProtKB/TrEMBL:Q7W0N8" FT /protein_id="CAE40439.1" FT /translation="MRMPTSEQRNCSPRVAMPRPVERALQRLGQDISTARRVRRLSQED FT LAQRVGTSLSTVRRMEDGHPGTALHTFLRALHVLGRLDDVLRVMATENDVLGMELVREQ FT LPQRVRTVRGSKPRVGHSAAVKEGASDDADELEGF" FT misc_feature complement(60637..60801) FT /note="HMMPfam hit to PF01381, Helix-turn-helix" FT misc_feature complement(60709..60774) FT /note="Predicted helix-turn-helix motif with score 2078 FT (+6.26 SD) at aa 41-62, sequence LSQEDLAQRVGTSLSTVRRMED" FT CDS complement(61078..62019) FT /transl_table=11 FT /locus_tag="BP0062" FT /product="hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7W0N7" FT /protein_id="CAE40440.1" FT /translation="MDTELPSLEHADGGAVIGGAVPELTRAFRMPEAEFRCDFLWDSRL FT VSRPRLLGAFRIRQIAALMLDWLSSEAEVLKRIVANRQALASTMYFALDSAFPYPEHAF FT AQSVYVGINIPRAKLQLSPDQRPGDVDCLIVPFSDNEILLERTIAIEAKIVRPSISNPG FT RNANTMGRAQVRGLLCYGFPFVGLVHISVPESMPSHMHWEVPEISDIAGSNGELIETGE FT YFIFDPFPLASARRQEGRVLALGLPVEVGYRVIALTLSNNGERFCGFTIGEARAGARNP FT VVSHRVLEAVRMLLTTEPHLFEVVHWFNEVGT" FT misc_feature complement(61128..68983) FT /note="low %GC region" FT CDS join(<62059..62328,62328..62411) FT /transl_table=11 FT /locus_tag="BP0063A" FT /product="putative transposase (partial)" FT /note="Similar to the C-terminal regions of Desulfovibrio FT vulgaris transposase OrfB SWALL:O31218 (EMBL:AF034211) (310 FT aa) fasta scores: E(): 6.6e-09, 51.47% id in 68 aa, and to FT Yersinia enterocolitica is1400 transposase B Trp1400B FT SWALL:Q9X9H9 (EMBL:AJ132945) (294 aa) fasta scores: E(): FT 1.2e-08, 50% id in 68 aa" FT /db_xref="GOA:Q7W0N6" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7W0N6" FT /protein_id="CAE40441.1" FT /translation="KGIAIRYIQPGKPNQNAFIERFNRTYRTEVLDAHLFANLELVQAI FT TDQWLVDYNQYPSAQIAGRPPADAIHAPVNPRSGRLSDNVYLTGGGLRQQTLMAHCLCL FT DQGPFERPSWSLF" FT CDS complement(62443..63279) FT /transl_table=11 FT /locus_tag="BP0063" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical 29.4 FT kDa protein TR:Q9RPF6 (EMBL:AF161263) (281 aa) fasta FT scores: E(): 1.1e-29, 35.294% id in 272 aa, and to FT Variovorax paradoxus 2,4-diphenoxyacetic acid gene cluster FT TR:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta scores: E(): FT 3.4e-28, 34.572% id in 269 aa" FT /db_xref="GOA:Q7W0N5" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7W0N5" FT /protein_id="CAE40442.1" FT /translation="MGRALAEQLGRELKQPVIVVNRSGAAGNIGAASVARADNDGYTLL FT MTSAPFAIAPAIFPDLSFHPIKDFTAITQISMVPLLVVTRANSPLNSISDLVAAAKQNE FT DSISFATFGVASPPHLAGQKIQELAGMKMLHIPYKGGSEAITELLSGQVSIGILDVISM FT MPMVKDGKLKALAITGPVRAQALPDVPTLVEAGISYDDVGWFGLFAPAGLSPAITQILN FT VAVNKILAKPEMQKLVVASSTVPITPSTSPGEWQALFNENVRAWGASATEALKEDE" FT CDS complement(63474..64055) FT /transl_table=11 FT /locus_tag="BP0064" FT /product="conserved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein PA4336 TR:Q9HW65 (EMBL:AE004850) (194 aa) fasta FT scores: E(): 5.5e-52, 66.492% id in 191 aa, and to FT Agrobacterium tumefaciens Agr_l_853p agr_l_853 TR:AAK88998 FT (EMBL:AE008241) (188 aa) fasta scores: E(): 3.3e-49, FT 63.102% id in 187 aa. Also similar to BP1542, 65.104% FT identity (65.104% ungapped) in 192 aa overlap." FT /db_xref="GOA:Q7W0N4" FT /db_xref="HSSP:1G2I" FT /db_xref="InterPro:IPR002818" FT /db_xref="UniProtKB/TrEMBL:Q7W0N4" FT /protein_id="CAE40443.1" FT /translation="MARKLLMLVGDYVEDYEVMVPFQAFQALGYQVDAVCPDKAAGDYV FT MTAVHDFEGAQTYSEKPGHRFTLNASFDQIEMEKYDGLVIPGGRAPEYLRLNSKLLALV FT RYFFEAEKPVACICHGIQILSTAGVLEGYKCACYNTCAPEVTAAGGTYVDIPMDEAITD FT RNLVTAFAWPSHPAWIAQFATLLGTKITHN" FT misc_feature complement(63495..64049) FT /note="HMMPfam hit to PF01965, ThiJ/PfpI family" FT CDS complement(64068..64370) FT /transl_table=11 FT /locus_tag="BP0065" FT /product="putative ferredoxin" FT /note="Similar to Marinosulfonomonas methylotropha FT ferredoxin TR:AAK84303 (EMBL:AF354805) (123 aa) fasta FT scores: E(): 1.8e-07, 35.955% id in 89 aa, and to FT Burkholderia cepacia Tbc2C monooxygenase TR:Q9EZN9 FT (EMBL:AF282898) (111 aa) fasta scores: E(): 3.6e-07, FT 34.694% id in 98 aa" FT /db_xref="GOA:Q7W0N3" FT /db_xref="InterPro:IPR017941" FT /db_xref="UniProtKB/TrEMBL:Q7W0N3" FT /protein_id="CAE40444.1" FT /translation="MVKACEENEIREGDIVEKKINGLDIILMRNGEQFFAAQAICPHMD FT EKLCNGLFKKTKLICTKHLWQWDLETGKPLGAAEKPIQIYKTTVKEGIVYVGVDN" FT misc_feature complement(64137..64313) FT /note="HMMPfam hit to PF00355, Rieske [2Fe-2S] domain" FT CDS complement(64489..65550) FT /transl_table=11 FT /locus_tag="BP0066" FT /product="oxidoreductase" FT /note="Similar to Marinosulfonomonas methylotropha FT reductase TR:AAK84310 (EMBL:AF360864) (364 aa) fasta FT scores: E(): 3.5e-26, 29.830% id in 352 aa, and to FT Alcaligenes faecalis ferredoxin reductase phnaA TR:Q9WXG6 FT (EMBL:AB024945) (342 aa) fasta scores: E(): 3.5e-20, FT 29.167% id in 336 aa" FT /db_xref="GOA:Q7W0N2" FT /db_xref="InterPro:IPR001221" FT /db_xref="UniProtKB/TrEMBL:Q7W0N2" FT /protein_id="CAE40445.1" FT /translation="MMQQEQRILFKNDVGDYAAVAAGEESVLQAGLRQSVPLNYHCASG FT SCGSCKARLIQGALKVYTGTDFIQVSHSAGQACECPEVHLCQSHAVSDCVFEALYDKNV FT PPDLAAPKHYAASLNDVRPLGSGLYRLLVDLDDSIRFLPGQYVMLATKAGGRARAYSVA FT NFAQDSRQLEFILSCNPNGAMSPQLCDINNIGMQLQGYGPLGKAYIRPKKDNELVMLVG FT GSGVSVALSTLEWAISSHYIDDRHLTIFWGVRDTSPIDLIGVFNRYAAVHSNLRVAVCS FT DISPSVQDRGRFPYIEFFTGYPADHIVNDASISWEGKEVYISGPPPMVDHTIRQLMINT FT EIDALDIECDSFV" FT misc_feature complement(64546..64911) FT /note="HMMPfam hit to PF00175, Oxidoreductase NAD-binding FT domain" FT misc_feature complement(65299..65532) FT /note="HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster FT binding domain" FT misc_feature complement(65401..65427) FT /note="ScanRegExp hit to PS00197, 2Fe-2S ferredoxins, FT iron-sulfur binding region signature." FT CDS complement(65582..66775) FT /transl_table=11 FT /locus_tag="BP0067" FT /product="integral membrane protein" FT /note="Similar to Pseudomonas aeruginosa probable FT C4-dicarboxylate transporter pa0886 TR:Q9I559 FT (EMBL:AE004523) (427 aa) fasta scores: E(): 2.3e-37, FT 32.812% id in 384 aa, and to Pseudomonas stutzeri probable FT C4-dicarboxylate transporter DctM TR:CAC44173 FT (EMBL:AJ313422) (426 aa) fasta scores: E(): 1.3e-36, FT 32.041% id in 387 aa" FT /db_xref="InterPro:IPR010656" FT /db_xref="UniProtKB/TrEMBL:Q7W0N1" FT /protein_id="CAE40446.1" FT /translation="MAATSYWVIDYPLMSMGLTSIDSLKNYTFLAVPLFIATGDLLTAG FT GVSQQLIKFSRAVIRAVPGRTAATSVLASGMFCAISGSSAAAAATMGKLMAPEFKRAQI FT PMRRGGATVAAGGILGGLIPPSTIIIIYSLTVNVSPVELNLAAILPGILILLFIFFVSI FT MRTRQYEPASKSTDGYFKEVGTSVLGATPAFIAIALLFVGLYSGLFSPTEAAGVVTIYC FT AVIGLYWSSQFGIRDIPKILMESASVTGIIGPIVVFSIQFQQILSVMEIPDLILVQLVE FT LSSAYGATVTLAVMMGIVLLFGTFMEVIAVILILAPIFAPIATEIGMNGVHWGMIFIIG FT ASIGFISPPHGLNLFITSMTMKIDYGELMAEIVRMIIPILVAWLIVAAFPYISLVFV" FT misc_feature complement(join(65600..65665,65705..65770,65816..65881, FT 66083..66148,66161..66226,66287..66352,66383..66448, FT 66512..66577,66623..66688)) FT /note="9 probable transmembrane helices predicted for FT BP0067 by TMHMM2.0 at aa 29-51, 66-88, 109-131, 141-163, FT 183-205, 209-231, 298-320, 335-357 and 370-392" FT CDS complement(join(66884..67270,67273..67422)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0068" FT /product="putative membrane protein (pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 50. Similar to Caulobacter FT crescentus hypothetical protein Cc1447 TR:Q9A8A7 FT (EMBL:AE005819) (139 aa) fasta scores: E(): 0.83, 28.155% FT id in 103 aa, and to Bacillus halodurans C4-dicarboxylate FT transport system bh2672 TR:Q9K9H5 (EMBL:AP001516) (183 aa) FT fasta scores: E(): 0.25, 24.528% id in 106 aa" FT /db_xref="PSEUDO:CAE40447.1" FT misc_feature complement(join(66959..67015,67052..67117)) FT /note="2 probable transmembrane helices predicted for FT BP0068 by TMHMM2.0 at aa 45-67 and 79-98" FT variation complement(67269..67272) FT /note="(TG)2 in pertussis; (TG)1 in bronchiseptica and FT parapertussis" FT CDS complement(67483..68664) FT /transl_table=11 FT /locus_tag="BP0069" FT /product="putative exported protein" FT /note="Similar to Escherichia coli putative ABC transporter FT periplasmic binding protein YiaO precursor or b3579 FT SW:YIAO_ECOLI (P37676) (328 aa) fasta scores: E(): 2.2e-08, FT 27.046% id in 281 aa, and to Rhizobium meliloti putative FT C4-dicarboxylate transporter periplasmic solute-binding FT protein precursor smb20981 TR:CAC49506 (EMBL:AL603646) (325 FT aa) fasta scores: E(): 4.9e-10, 26.761% id in 284 aa" FT /db_xref="GOA:Q7W0N0" FT /db_xref="InterPro:IPR018389" FT /db_xref="UniProtKB/TrEMBL:Q7W0N0" FT /protein_id="CAE40448.1" FT /translation="MTHSNHNSMRRSTLRKLTGLGMGTILTAGAGAAAVLAPFNSFAKS FT EAKAAYRFRFGTIYTPSAAEYTAPGIYDFVERVQRKSDGEIAIQLIDKAQACSEDQCAQ FT RVMSGILHMGSSTFQNTGATMPYSVALDWPFLWKSRVAYHNFLLSKESNRLYRDVLRNK FT YGVVPLYASGSMRNIMMGKKYSEAADITSPDALNGAKIRITNSEMISNFAKSMGMAPIP FT LAWGELLEGLKSGLVDATETYPSAAAGFGMYSVLSQDIDVQFCPGYSMIFMAAKTFDKL FT PERLQELIYESAYESMVEAYQTSIIAESTLVGIGPNPSPDSAYQRGKIRQIKLSHEQHA FT AFKESGSVENNSQLYANLRKQLDDIAGIDVYGALSEYAKNTSSTELMAEKWWT" FT misc_feature complement(68536..68664) FT /note="Signal peptide predicted for BP0069 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.837 between residues 43 and 44" FT misc_feature complement(68548..68613) FT /note="1 probable transmembrane helix predicted for BP0069 FT by TMHMM2.0 at aa 17-39" FT CDS complement(68685..68984) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0070" FT /product="putative hydroxylase beta subunit (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Methylosulfonomonas FT methylovora hydroxylase beta subunit MsmB TR:Q9X405 FT (EMBL:AF091716) (181 aa) fasta scores: E(): 2.4, 26.923% id FT in 104 aa, and to Pseudomonas aeruginosa ortho-halobenzoate FT 1,2-dioxygenase beta-isp protein OhbA ohbA TR:Q9Z5W2 FT (EMBL:AF121970) (176 aa) fasta scores: E(): 0.017, 22.581% FT id in 93 aa" FT repeat_region 68984..69015 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 68984..70036 FT CDS 69086..70036 FT /transl_table=11 FT /locus_tag="BP0071" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTC0" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTC0" FT /protein_id="CAE40450.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN" FT misc_feature 69344..69409 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 69467..70000 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(70005..70036) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 70130..70444 FT /transl_table=11 FT /locus_tag="BP0072" FT /product="transposase" FT /note="Similar to Rhizobium meliloti transposase for FT insertion sequence element IsrM1 TR:CAC47072 FT (EMBL:AL591790) (123 aa) fasta scores: E(): 1.1, 21.212% id FT in 99 aa, and to Caulobacter crescentus ISCC3 transposase FT OrfA cc2728 or cc0625 or cc2657 TR:Q99QI0 (EMBL:AE005939) FT (125 aa) fasta scores: E(): 1.2, 27.523% id in 109 aa" FT /db_xref="UniProtKB/TrEMBL:Q7W0M9" FT /protein_id="CAE40451.1" FT /translation="MSMKMEEDIKRWTAKRKSALVLDIIQGKTTVAEASRQYDLSPSEV FT EQWVDDGKRGMENALRANPQDVREQYERQLKDMQEAYGEAMLELRARKKLQSLLGEDEK FT " FT misc_feature 70214..70279 FT /note="Predicted helix-turn-helix motif with score 1232 FT (+3.38 SD) at aa 29-50, sequence TTVAEASRQYDLSPSEVEQWVD" FT repeat_region 70337..70541 FT /note="This region is repeated between positions FT 3018982..3019523" FT CDS 70441..71259 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0073" FT /product="transposase (pseudogene)" FT /note="Pseudogene. This CDS lacks a stop codon. Similar to FT Erwinia herbicola pvgypsophilae OrfB TR:Q9AMM1 FT (EMBL:AF324174) (274 aa) fasta scores: E(): 5.3e-13, FT 28.295% id in 258 aa, and to Caulobacter crescentus FT insertion sequence IS511 orfA and orfB genes, complete CDS FT cc2742 or cc0515 or cc2290 or cc2690 TR:Q45993 FT (EMBL:U39501) (308 aa) fasta scores: E(): 2.8e-14, 31.579% FT id in 266 aa. Note that this CDS is highly similar to the FT 3'end of BP2842" FT misc_feature 70753..71250 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region 70961..71287 FT /note="This region is repeated between positions FT 3018982..3019523" FT tRNA complement(71391..71475) FT /note="tRNA Leu anticodon CAA, Cove score 75.82" FT CDS 71637..73544 FT /transl_table=11 FT /gene="htpG" FT /locus_tag="BP0074" FT /product="heat shock protein" FT /note="Similar to Escherichia coli heat shock protein HtpG FT or b0473 or z0590 or ecs0526 SW:HTPG_ECOLI (P10413) (624 FT aa) fasta scores: E(): 9.1e-145, 59.840% id in 625 aa, and FT to Pseudomonas aeruginosa heat shock protein HtpG or pa1596 FT TR:Q9I3C5 (EMBL:AE004587) (634 aa) fasta scores: E(): FT 9.7e-144, 58.003% id in 631 aa" FT /db_xref="GOA:Q7W0M8" FT /db_xref="InterPro:IPR001404" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0M8" FT /protein_id="CAE40453.1" FT /translation="MSQTTTTSASETLGFQAEVKQLLHLMIHSLYSNKEIFLRELVSNA FT SDACDKLRFEAIDQPGLLEGDGELAIRVGYDKAARTITISDNGIGLSRDEAVANLGTIA FT RSGTREFFSQLTGDKQKDAQLIGQFGVGFYSSFIVADKVTVLSRRAGLAANEAIRWESD FT GQGEFSIAPAEKAGRGTDVVLHLRADEDELLNGWKLREILRRYSDHISLPIRMAKEDWD FT AEKGEQVKGDELETVNQANALWTRNKSDITDEQYREFYKTVSHDYDDPLAWTHNRVEGR FT SEYTQLLYVPKHAPFDLWDRDARRGVKLYVKRVFIMDDAEQLLPSYLRFVRGVIDSADL FT PLNVSREILQESRDVRAIREGSAKRVLSLLEDMAENKAEDYATFWTEFGQVLKEGTGED FT AANRERIARLLRFASTHDGEQAQTVSFADYVGRMKDGQDKIYYVTADTFTAAANSPHLE FT IFRKKGIEVLLLSDRVDEWMLSYLREFDGKSLVSVAKGGLDLAELADEEEKKRQSEVAE FT TFKPLVERLQQALAEQVKEVRVTQRLVDSPACVVVGQNELSPHLLRMLKAAGQEAPEVK FT PVLEINPDHALVARIRDASDAEFGDWAALLLDQALLAEGAQIADPAAFVKRLNGLLLKA FT " FT misc_feature 71727..71756 FT /note="ScanRegExp hit to PS00298, Heat shock hsp90 proteins FT family signature. Confirmed by InterPro eMOTIF pattern FT match." FT misc_feature 71733..72206 FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, phytochrome-like ATPase" FT misc_feature 72210..72293 FT /note="HMMPfam hit to PF00183, Hsp90 protein" FT misc_feature 72324..73532 FT /note="HMMPfam hit to PF00183, Hsp90 protein" FT CDS complement(73706..74326) FT /transl_table=11 FT /locus_tag="BP0075" FT /product="probable glutathione S-transferase" FT /note="Similar to Rhodococcus spAD45 glutathione FT S-transferase IsoJ TR:Q9RBP3 (EMBL:AJ249207) (233 aa) fasta FT scores: E(): 2.2e-12, 30.732% id in 205 aa, and to FT Pseudomonas aeruginosa probable glutathione S-transferase FT pa2813 TR:Q9I030 (EMBL:AE004708) (206 aa) fasta scores: FT E(): 4.6e-39, 48.058% id in 206 aa" FT /db_xref="GOA:Q7W0M7" FT /db_xref="InterPro:IPR012335" FT /db_xref="UniProtKB/TrEMBL:Q7W0M7" FT /protein_id="CAE40454.1" FT /translation="MLKIWGRLSSVNVQKVMWAVRELALPHTFIEAGGQFGGLDTPEYL FT RMNPNRKVPLIDDGGFILWESNAIVRYLGARYGEGAISPADPCVRADADRWMDWQTTEW FT QPSMLAAFMGLVRTAPEQRDAAAIEASARQAGKIALMLENALAGRDFIAGPQFSMGDIA FT LGCAAHRWLGLPVERPATPHISAWYRRLMMRPATQGILTLPLT" FT misc_feature complement(73742..74323) FT /note="HMMPfam hit to PF00043, Glutathione S-transferase, FT C-terminal domain" FT CDS complement(74358..74939) FT /transl_table=11 FT /gene="ampD" FT /locus_tag="BP0076" FT /product="N-acetylmuramoyl-L-alanine amidase" FT /note="Similar to Escherichia coli AmpD protein or b0110 FT SW:AMPD_ECOLI (P13016) (183 aa) fasta scores: E(): 5e-35, FT 51.977% id in 177 aa, and to Pseudomonas aeruginosa FT N-acetyl-anhydromuramyl-L-alanine amidase AmpD or pa4522 FT TR:Q9ZGA0 (EMBL:AF082575) (188 aa) fasta scores: E(): FT 1.9e-37, 58.960% id in 173 aa" FT /db_xref="GOA:Q7W0M6" FT /db_xref="HSSP:1J3G" FT /db_xref="InterPro:IPR002502" FT /db_xref="UniProtKB/TrEMBL:Q7W0M6" FT /protein_id="CAE40455.1" FT /translation="MQRLLLDRHGWLIPGPAVTRAPSPNVNARPAGTQISLLVIHNISL FT PPSQFGGPYVADLFLNRLDYSADPWLERLRGLHVSAHFFIRRDGAVIQFAATEARAWHA FT GVSRFRGRDNCNDFSIGIELEGTDILPYADAQYATLARLAQVLRARYPLADARGHEHIA FT PGRKTDPGRAFNWVRFGRESGFPRRNLPPV" FT misc_feature complement(74406..74777) FT /note="HMMPfam hit to PF01510, N-acetylmuramoyl-L-alanine FT amidase" FT CDS complement(75028..75279) FT /transl_table=11 FT /locus_tag="BP0077" FT /product="putative exported protein" FT /note="Similar to Pseudomonas stutzeri hypothetical 9.0 kDa FT protein TR:Q9RLD2 (EMBL:AJ249642) (77 aa) fasta scores: FT E(): 0.021, 33.333% id in 81 aa" FT /db_xref="UniProtKB/TrEMBL:Q7W0M5" FT /protein_id="CAE40456.1" FT /translation="MGKLIFWFVVILAVLFIARLAGARAASKRAPRAEPPRPAQDAASQ FT PMVRCAHCGVHLPRSEAVLLGGQTWCSSDHARRGAERG" FT misc_feature complement(75211..75267) FT /note="1 probable transmembrane helix predicted for BP0077 FT by TMHMM2.0 at aa 4-23" FT misc_feature complement(75211..75279) FT /note="Signal peptide predicted for BP0077 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.991) with cleavage site FT probability 0.486 between residues 23 and 24" FT CDS complement(75281..76123) FT /transl_table=11 FT /locus_tag="BP0078" FT /product="putative membrane protein" FT /note="Similar to Neisseria meningitidis hypothetical inner FT membrane protein nma2189 TR:Q9JSQ1 (EMBL:AL162758) (268 aa) FT fasta scores: E(): 2.2e-25, 37.184% id in 277 aa, and to FT Azospirillum brasilense hypothetical 28.8 kDa protein in FT nifR3-like 5'region SW:YNR3_AZOBR (P45674) (271 aa) fasta FT scores: E(): 1.6e-13, 31.707% id in 287 aa" FT /db_xref="GOA:Q7W0M4" FT /db_xref="InterPro:IPR002541" FT /db_xref="UniProtKB/TrEMBL:Q7W0M4" FT /protein_id="CAE40457.1" FT /translation="MSSGIVFHAVAALAYAVLAGSLWRRLQGRGSVDQASKLTRTGLLG FT ALALHGVALQQAMLGTQHLYIGWALALSAAVWLGLVVFWLESLLIRIDGLQLLLLPAAA FT IVTAIAALFPQAQLVPHANNPWLRAHLLIALAAYGLITIAALHAMLMALLDRHLHRPLD FT APAERSIVGRVLDAQPPLLVQERLLFRVIWIGFVVLTLAVGSGSVASITLTGKFLPFDH FT KTIFTLLSWATFGVLLLGRHICGWRGRVALRWTLTGFAFLILAYTGSRFVLEVILHRG" FT misc_feature complement(join(75308..75373,75395..75451,75482..75547, FT 75671..75736,75767..75832,75869..75934,75947..75997, FT 76061..76126)) FT /note="8 probable transmembrane helices predicted for FT BP0078 by TMHMM2.0 at aa 26-48, 69-86, 90-112, 124-146, FT 156-178, 219-241, 251-270 and 277-299" FT CDS 76229..77638 FT /transl_table=11 FT /gene="ffh" FT /locus_tag="BP0079" FT /product="signal recognition particle protein" FT /note="Similar to Escherichia coli signal recognition FT particle protein Ffh or b2610 or z3904 or ecs3473 FT SW:SR54_ECOLI (P07019) (453 aa) fasta scores: E(): 1.4e-68, FT 63.169% id in 467 aa, and to Neisseria meningitidis signal FT recognition particle protein Ffh TR:Q9JPK6 (EMBL:AJ391261) FT (456 aa) fasta scores: E(): 2.4e-71, 63.539% id in 469 aa" FT /db_xref="GOA:Q7W0M3" FT /db_xref="HSSP:1FFH" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W0M3" FT /protein_id="CAE40458.1" FT /translation="MLDNLTQRLSRVVKTLRGEARLTEANTQEMLREVRMALLEADVAL FT PVVRDFVARVKEKALGEEVAGSLSPGQALVGVVHKELTSLMGGDLGEHAGELSLATQPP FT AVILMAGLQGAGKTTTTGKLARWLSEGQHVQGGRKTGKKKVLVVSADVYRPAAIEQLKT FT VAAQVGVDFLPSDVSQKPEDIARNAIDHARRHHYDVLIVDTAGRLGIDEAMMREIRALH FT DLVKPIETLFVVDAMQGQDAVNTARAFGDALPLTGVVLTKLDGDARGGAALSVRHVTGK FT PLKFVGVSEKLDGLEPFHPERMAQRVLGMGDIVSLVEQAQKNIDIAEAQKLASKIKSGN FT KFDLNDFRDQLDQVKKLGDMGSLLEKLPAQLQQAAGQLQGGQAEKQLRRTEGILNSMTP FT GERAKPELIKASRKRRIAAGAGVPVQEVNRLLSQFEQMQGMMKQMKKGGMAKMMRAMGG FT MKGLGRFGGMR" FT misc_feature 76307..77152 FT /note="HMMPfam hit to PF00448, SRP54-type protein, GTPase FT domain" FT misc_feature 76559..76582 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 76985..77002 FT /note="ScanRegExp hit to PS00343, Gram-positive cocci FT surface proteins 'anchoring' hexapeptide." FT misc_feature 77072..77113 FT /note="ScanRegExp hit to PS00300, SRP54-type proteins FT GTP-binding domain signature." FT CDS complement(77635..78585) FT /transl_table=11 FT /locus_tag="BP0080" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE40459.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 77635..77666 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(77635..78687) FT misc_feature complement(77671..78204) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(78262..78327) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(78656..78687) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 78687..79604 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0081" FT /product="transposase for IS1002 (pseudogene)" FT /note="transposase for IS1002. The N-terminal region of FT this CDS has been deleted by the insertion of a IS481 FT element" FT repeat_region 78687..79604 FT /note="IS1002 element" FT misc_feature 78726..78791 FT /note="Predicted helix-turn-helix motif with score 1627 FT (+4.73 SD) at aa 6-27, sequence WTMRQASQAAGVSLRTGYKWLA" FT misc_feature 79032..79568 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(79579..79604) FT /note="Inverted repeat for IS1002 element" FT CDS complement(79601..81475) FT /transl_table=11 FT /gene="bplL" FT /gene_synonym="wlbL" FT /locus_tag="BP0082" FT /product="lipopolysaccharide biosynthesis protein" FT /note="Identical to the previously sequenced Bordetella FT pertussis DNA for lipopolysaccharide biosynthesis locus FT BplL TR:Q45387 (EMBL:X90711) (624 aa) fasta scores: E(): 0, FT 100.000% id in 624 aa, and to Bordetella bronchiseptica FT putative nucleotide sugar epimerase/dehydratase WlbL FT TR:O87995 (EMBL:AJ007747) (624 aa) fasta scores: E(): 0, FT 99.679% id in 624 aa" FT /db_xref="GOA:Q45387" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q45387" FT /protein_id="CAE40461.1" FT /translation="MTLPYAIRRLFVDLPRPFKQMLAIVLDAVILLGAFHLALWLRFEL FT FFLTDQYLFLSLLACAGGIAALAAFGVYLYILRYMSERVLAAILGGIVVSVMVVTAGNT FT FLQLATISRGVLVLYAALALVGLIGVRLIARKLLFPADHHMADPRTPVLIYGAGGAGSQ FT LAMALRTGPHYRPVAMLDDDKRKHRLVVNGLRVYPPEQLPKLIDRHNIRQLLIAMPSAP FT PKQIRSIVEAAEPYRLRIRLVPSMRELIDPTNGVRLRDVQVEDLLGRDPVAPIDTLLGR FT CVTDRVVMVTGAGGSIGSELCRQILALRPRKLVLFEIAEPALYAIEQDLRQRIGERNIE FT IAGVLGSVRDAAHCLAQLQEHGVQTIYHAAAYKHVPIVEHNVSEGIRTNAFGTLNMAET FT AIQAGVLDFVLISTDKAVRPTNVMGASKRLAELILQAHAQIQDKTRFSMVRFGNVLGSS FT GSVVPLFRRQILEGGPITLTHPEITRYFMTIPEAAQLVLQAGAMGESGSVFVLDMGEPV FT LIRELAERMVRLYGLTVKNSDQPDGDIEIRITGLRPGEKLYEELLIGEDSRETLHPRIM FT RATEYSLPYETLMGQLRMLDRSLQMCSPRQAAELLGQIVREYASVTYA" FT misc_feature 79605..94272 FT /note="Lipopolysaccharide biosynthesis locus" FT misc_feature complement(79625..81211) FT /note="HMMPfam hit to PF02719, Polysaccharide biosynthesis FT protein" FT misc_feature complement(79946..79981) FT /note="ScanRegExp hit to PS00135, Serine proteases, trypsin FT family, serine active site." FT misc_feature complement(join(80963..81019,81080..81145,81158..81223, FT 81245..81310,81356..81412)) FT /note="5 probable transmembrane helices predicted for FT BP0082 by TMHMM2.0 at aa 21-40, 55-77, 84-106, 110-132 and FT 152-171" FT CDS complement(join(81524..82195,82198..82830)) FT /pseudo FT /transl_table=11 FT /gene="bplJ" FT /gene_synonym="bplK" FT /gene_synonym="wlbjK" FT /locus_tag="BP0083" FT /product="putative integral membrane protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 211. The frameshift occurs within FT a (TG)2 polymeric tract. The sequence has been checked and FT believed to be correct. Previously sequenced in Bordetella FT pertussis as two separate CDSs, BplJ TR:Q45384 FT (EMBL:X90711) and bplK TR:Q45385 (EMBL:X90711). Similar to FT Bordetella bronchiseptica putative integral membrane FT protein WlbjK TR:O87996 (EMBL:AJ007747) (434 aa) fasta FT scores: E(): 6e-171, 97.696% id in 434 aa" FT /db_xref="PSEUDO:CAE40462.1" FT misc_feature complement(join(81614..81679,81701..81766,81797..81853)) FT /note="3 probable transmembrane helices predicted for FT BP0083 by TMHMM2.0 at aa 115-134, 144-166 and 173-195" FT misc_feature complement(join(82171..82227,82297..82362,82408..82473, FT 82495..82560,82576..82632,82726..82791)) FT /note="6 probable transmembrane helices predicted for FT BP0084 by TMHMM2.0 at aa 15-37, 68-87, 92-114, 121-143, FT 158-180 and 203-222" FT variation complement(82196..82199) FT /note="(TG)2 in pertussis; (TG)1 in parapertussis and FT bronchiseptica" FT CDS complement(82823..83527) FT /transl_table=11 FT /gene="bplI" FT /gene_synonym="wlbI" FT /locus_tag="BP0085" FT /product="lipopolysaccharide biosynthesis protein" FT /note="Identical to the previously sequenced Bordetella FT pertussis and Bordetella bronchiseptica DNA for FT lipopolysaccharide biosynthesis locus BplI or WlbI FT TR:Q45383 (EMBL:X90711) (233 aa) fasta scores: E(): FT 6.6e-87, 100.000% id in 233 aa" FT /db_xref="UniProtKB/TrEMBL:Q7W0M2" FT /protein_id="CAE40463.1" FT /translation="MMTLLPLLVIASYSIIHLLEYLSYYARVAGRMAGKPVTGYAIQNA FT TTTVTRFFYLALMPLLGFLVDKQVPTSLYLQMGLAAMFGAALLSLLGYWLRYSWIALLT FT NAVRKRAGQPPLRVEEIRTALEAPASLPKKRIALLAAIVFLCYCLGVLLSYFFALVFHE FT YRSTISQLSGLINGVATVLLTFVLEPRIAGIVDARPTHDVYHAIQAMLNGRLIAIGLLA FT PALFFGVCIGFV" FT misc_feature complement(join(82829..82894,82958..83023,83054..83119, FT 83228..83293,83333..83386,83450..83515)) FT /note="6 probable transmembrane helices predicted for FT BP0085 by TMHMM2.0 at aa 4-26, 47-65, 78-100, 136-158, FT 168-190 and 211-233" FT CDS complement(83524..84696) FT /transl_table=11 FT /gene="bplH" FT /gene_synonym="wlbH" FT /locus_tag="BP0086" FT /product="putative glycosyl transferase" FT /note="Identical to the previously sequenced Bordetella FT parapertussis putative glcnac transferase WlbH TR:O52848 FT (EMBL:AJ224768) (390 aa) fasta scores: E(): 1.1e-153, FT 99.487% id in 390 aa, and to Bordetella pertussis and B. FT bronchiseptica hypothetical 42.8 kDa protein BplH or WlbH FT TR:Q45386 (EMBL:X90711) (390 aa) fasta scores: E(): FT 2.2e-154, 99.744% id in 390 aa" FT /db_xref="GOA:Q45386" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q45386" FT /protein_id="CAE40464.1" FT /translation="MLSNVPSRQSPDFAQRTPARVALLGPARSIHTIRWANGLALRGLQ FT VHLLSLETPDLSLYDERIVQYRLPWRAPLGYFLAAPRLRALLKRIDPDLLNVHYATGYG FT LLARRARFSPVLLSAWGSDIYEFPNSSTWHKALLQRNLDHATALAATSHAMQREMRGLT FT RRPIFVTPFGIDEALFQPAQSVQAPAADGPIVIGTVKALETHYGIDTLIQAFALLRQAL FT AASQPGMAERLVLRIYGAGSQLQRLRAQAQAAHIANQVEFKGRIPHAEVPEALRALDVY FT VALSRMDSFGVAILEACSCALPVVVSNADGPAEVVVDGKTGYIVAREDAHAAADRLQEL FT VLNPELRQRLGAAGRARVLSEYTWSKSLDMMLDAYTETARLYRATQPASV" FT misc_feature complement(83626..84162) FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1" FT CDS complement(84892..85485) FT /transl_table=11 FT /gene="bplG" FT /gene_synonym="wlbG" FT /locus_tag="BP0087" FT /product="probable sugar transferase" FT /note="Identical to the previously sequenced Bordetella FT pertussis DNA for lipopolysaccharide biosynthesis locus FT BplG TR:Q45382 (EMBL:X90711) (197 aa) fasta scores: E(): FT 2.6e-77, 100.000% id in 197 aa, and to Bordetella FT bronchiseptica putative transferase WlbG TR:O87997 FT (EMBL:AJ007747) (197 aa) fasta scores: E(): 2.9e-76, FT 98.477% id in 197 aa" FT /db_xref="GOA:Q45382" FT /db_xref="InterPro:IPR003362" FT /db_xref="UniProtKB/TrEMBL:Q45382" FT /protein_id="CAE40465.1" FT /translation="MIKRLFDVVCSGLGLLALLPLLALIAIAIKLDSPGPVFFRQERVG FT KDGVPFRIHKLRSMSVRQDPQAGQITVGADPRITRVGKWIRKWKLDELVQLIDVFTGSM FT SLVGPRPEVPRYVVLYPDALRDLVLSVRPGITDPASIRFRNENEILGQSSDPERTYREI FT ILPEKLRIQAEYVQTRTFLGDLKIIAHTLLAVAR" FT misc_feature complement(84895..85479) FT /note="HMMPfam hit to PF02397, Bacterial sugar transferase" FT misc_feature complement(85399..85464) FT /note="1 probable transmembrane helix predicted for BP0087 FT by TMHMM2.0 at aa 7-29" FT misc_feature complement(85402..85485) FT /note="Signal peptide predicted for BP0087 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.991) with cleavage site FT probability 0.704 between residues 28 and 29" FT CDS complement(85482..86714) FT /transl_table=11 FT /gene="bplF" FT /gene_synonym="wlbF" FT /locus_tag="BP0088" FT /product="lipopolysaccharide biosynthesis protein" FT /note="Identical to the previously sequenced Bordetella FT pertussis DNA for lipopolysaccharide biosynthesis locus FT BplF TR:Q45381 (EMBL:X90711) (395 aa) fasta scores: E(): FT 2.2e-156, 100.000% id in 395 aa, and to Bordetella FT bronchiseptica putative amino-sugar biosynthesis protein FT WlbF TR:O87998 (EMBL:AJ007747) (395 aa) fasta scores: E(): FT 6.6e-154, 98.734% id in 395 aa" FT /db_xref="GOA:Q7W0M1" FT /db_xref="HSSP:1B9H" FT /db_xref="InterPro:IPR015422" FT /db_xref="UniProtKB/TrEMBL:Q7W0M1" FT /protein_id="CAE40466.1" FT /translation="MPPAARLSLLQRSSTMSDFLPFALPDIGEAEIQAVTESMRSGWLT FT TGPNAREFEREFAAYIGADVEAVAVNSATAGLHLALEAIGVGPGDEVITTTHTFTASAE FT VARYLGAEPVLVDIDPATLCISPAAIERAITPRTRAIVPVHYGGLSCDMDSILEIARKH FT GLKVIEDAAHALPASWQGRRIGSLESDLTVYSFYATKTLATGEGGMVVTRDPALAKRCR FT VMRLHGIDRDAFDRFTSKKPAWYYEIVAPGFKYNMTDTAAAMGRVQLQRVQQMRDRRAQ FT IAAAYDQAFADLPLTLPPGPGRTPGVERVAHRDDDEHSWHLYAIRIHPQAPLKCDDFIV FT RMTENGIGCSVHYVPLHLQPYWRDRYGLTPDMYPHSQAAFEGMASLPIYSRMTDADVQR FT VIASVRQLLRP" FT misc_feature complement(85500..86642) FT /note="HMMPfam hit to PF01041, DegT/DnrJ/EryC1/StrS family" FT CDS complement(86732..87991) FT /transl_table=11 FT /gene="bplE" FT /gene_synonym="wlbE" FT /locus_tag="BP0089" FT /product="probable glycosyl transferase" FT /note="Identical to the previously sequenced Bordetella FT pertussis DNA for lipopolysaccharide biosynthesis locus FT BplE TR:Q45380 (EMBL:X90711) (403 aa) fasta scores: E(): FT 1.2e-163, 100.000% id in 403 aa, and to Bordetella FT bronchiseptica putative transferase WlbE TR:O87999 FT (EMBL:AJ007747) (419 aa) fasta scores: E(): 6.7e-170, FT 99.523% id in 419 aa" FT /db_xref="GOA:Q7W0M0" FT /db_xref="InterPro:IPR001296" FT /db_xref="UniProtKB/TrEMBL:Q7W0M0" FT /protein_id="CAE40467.1" FT /translation="MNILLINHYAGSPRYGMEFRPYYFGREWIGHGHQVKVAASTISHI FT RARAPQAGGRLTRENVDGIEYLWYATLPYQGNGARRLLNMLQFSARLYGLRRDLGGWRP FT DIVIASSTHPYDVLPAARLARQTGARLVFEVHDLWPLTPRLLGGFKAWHPMIASMQYAE FT DYAYRHADLTVSMLPCALPYMRERGLDPRRYAHVPNGVPVTEYSSPDFDNPDYLRVRAQ FT IRQLREQCDFVLAYAGTHGHANALDMLLQAMARLRDQPIGLLLLGDGPDKPELKRLAGQ FT LGLRHIAFADPVPRPAVQAVMADIDAAYIGLRRSPLFQFGVSPNKLFDYMLSACPVVQS FT IESGNDIVADARCGLSVPAEDPAALAAALHGLRTLPAAERQAMGRRGRDYVLARHDYPV FT LAQQFLDAVQSVTPRRAASR" FT misc_feature complement(86822..87256) FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1" FT CDS complement(88015..89103) FT /transl_table=11 FT /gene="bplD" FT /gene_synonym="wlbD" FT /locus_tag="BP0090" FT /product="UDP-N-acetylglucosamine 2-epimerase" FT /note="Identical to the previously sequenced Bordetella FT pertussis DNA for lipopolysaccharide biosynthesis locus FT BplD TR:Q45379 (EMBL:X90711) (362 aa) fasta scores: E(): FT 1.8e-139, 100.000% id in 362 aa, and to Bordetella FT bronchiseptica putative UDP-N-acetylglucosamine 2-epimerase FT WlbD TR:O88000 (EMBL:AJ007747) (362 aa) fasta scores: E(): FT 2.3e-138, 99.724% id in 362 aa" FT /db_xref="GOA:Q45379" FT /db_xref="HSSP:1O6C" FT /db_xref="InterPro:IPR003331" FT /db_xref="UniProtKB/TrEMBL:Q45379" FT /protein_id="CAE40468.1" FT /translation="MPKKILTVLGARPQFIKASVVSAAIAQHPELTEVVVHTGQHFDAN FT MSDVFFDELGMQTPAHQLDIHGGGHGDMTGRMLVALEQVMQAEKPDVVLVYGDTNSTLA FT GALAAVKLHIPVAHVEAGLRSFNLRMPEEVNRILTDRISRWLFTPTDSATRHLAAEGQS FT GEKVVQVGDVMYDVALHHGARVTAEGRALAAHGLKPGGYVLATIHRAENTDDAQRLTTI FT VRALQALAAERQVVWPLHPRTWGILARLGLLDELASTVTLLEPVGYLDMVQLEKYAALI FT ATDSGGVQKEAFFHRIPCVTLRDETEWTELVDAGWNRLAPPVSSAVVAQAVQDALREQP FT RDVQPYGDGQAARRIVDALAAH" FT misc_feature complement(88024..88968) FT /note="HMMPfam hit to PF02350, UDP-N-acetylglucosamine FT 2-epimerase" FT misc_feature complement(89035..89103) FT /note="Signal peptide predicted for BP0090 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.817) with cleavage site FT probability 0.795 between residues 23 and 24" FT CDS complement(89111..90211) FT /transl_table=11 FT /gene="bplC" FT /gene_synonym="wlbC" FT /locus_tag="BP0091" FT /product="lipopolysaccharide biosynthesis protein" FT /note="Identical to the previously sequenced Bordetella FT pertussis DNA for lipopolysaccharide biosynthesis locus FT BplC TR:Q45378 (EMBL:X90711) (366 aa) fasta scores: E(): FT 6.7e-144, 100.000% id in 366 aa, and to Bordetella FT bronchiseptica putative amino-sugar biosynthesis protein FT WlbC TR:O88001 (EMBL:AJ007747) (366 aa) fasta scores: E(): FT 2.5e-143, 99.454% id in 366 aa" FT /db_xref="GOA:Q45378" FT /db_xref="HSSP:1MDX" FT /db_xref="InterPro:IPR015422" FT /db_xref="UniProtKB/TrEMBL:Q45378" FT /protein_id="CAE40469.1" FT /translation="MQFIDLKTQYQALRDTINPRIQAVLDHGQFIMGPEVKELEAALCA FT YTGAKHCITVASGTEALLISLMALGVKAGDEVITTSFTFVATAEVIALLGAKPVFVDVE FT PDTCNIKVSEIEAKITPRTKAIIPVSLYGQCGDMDEVNAVAARHGLPVIEDAAQSFGAT FT YKGRKSCNLSTIGCTSFFPSKPLGCYGDGGALFTNDDELAQAMREIRVHGQSGRYYHAR FT IGVGGRMDTLQCAVVLGKLERFDWEIAQRIKIGARYQQLLADLPGGACTVTVRPDRDSV FT WAQFTVMVPNREAVIAQLKEAGIPTAVHYPRPIHAQPAYEQYAEGAGATPVSDDLAARV FT MSLPMHPDLDEATQDKIVAALRQALN" FT misc_feature complement(89126..90181) FT /note="HMMPfam hit to PF01041, DegT/DnrJ/EryC1/StrS family" FT CDS complement(90215..90790) FT /transl_table=11 FT /gene="bplB" FT /gene_synonym="wlbB" FT /locus_tag="BP0092" FT /product="probable acetyltransferase" FT /note="Identical to the previously sequenced Bordetella FT pertussis and Bordetella bronchiseptica DNA for FT lipopolysaccharide biosynthesis locus BplB or WlbB FT TR:Q45377 (EMBL:X90711) (191 aa) fasta scores: E(): FT 4.3e-79, 100.000% id in 191 aa, and to Pseudomonas FT aeruginosa probable acetyltransferase WbpD TR:P72135 FT (EMBL:U50396) (163 aa) fasta scores: E(): 4.2e-48, 77.483% FT id in 151 aa" FT /db_xref="GOA:Q79H46" FT /db_xref="InterPro:IPR018120" FT /db_xref="UniProtKB/TrEMBL:Q79H46" FT /protein_id="CAE40470.1" FT /translation="MTTIHPTAIVDEGARIGANSRIWHWVHICGGAEIGAGCSLGQNVF FT VGNRVRIGDRVKIQNNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERKNEYRDTLVR FT QGATLGANCTIVCGATVGRYAFVGAGAVVNKDVPDFALVVGVPARQIGWMSRHGEQLDL FT PLAGNGQARCPHTGDLYILENGVCRLGE" FT misc_feature complement(90230..90256) FT /note="ScanRegExp hit to PS00572, Glycosyl hydrolases FT family 1 active site." FT misc_feature complement(90422..90475) FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature complement(90593..90646) FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature complement(90647..90700) FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT misc_feature complement(90701..90754) FT /note="HMMPfam hit to PF00132, Bacterial transferase FT hexapeptide (four repeats)" FT CDS complement(90794..91846) FT /transl_table=11 FT /gene="bplA" FT /gene_synonym="wlbA" FT /locus_tag="BP0093" FT /product="probable oxidoreductase" FT /note="Identical to Bordetella pertussis and Bordetella FT bronchiseptica DNA for lipopolysaccharide biosynthesis FT locus BplA or WlbA TR:Q45376 (EMBL:X90711) (350 aa) fasta FT scores: E(): 1.2e-144, 100.000% id in 350 aa, and similar FT to Vibrio anguillarum putative dehydrogenase TR:Q9XBT9 FT (EMBL:AF156256) (318 aa) fasta scores: E(): 3.8e-83, FT 63.722% id in 317 aa" FT /db_xref="GOA:Q79H45" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q79H45" FT /protein_id="CAE40471.1" FT /translation="MSSLPITDRKIRFGLVGCGRISKNHIGAIAQHGDRAELVEICDTN FT PEALQAAEAATGARPFSSLSDMLAQGNADALVLATPSGLHPWQAIEVAQAGRHVVSEKP FT MATRWEDGKRMVKACDEAGVRLFVVKQNRRNATLQLVKKAIEQGRFGRIYMVTVNVFWT FT RPQEYYDAARWRGKWEWDGGAFMNQASHYVDLLDWLVGPVESVYAYTATLARRIEAEDT FT GVAALRWRHGAMGSINVTMLTYPQNLEGSITILGEKGTVRVGGVAVNRIDEWKFAEPHP FT DDDKIREANYETTSVYGFGHPLYYDNVINCLRGDCEPETDGREGLQSLALLTAIYRSAR FT DGVRIPLPLD" FT misc_feature complement(91076..91816) FT /note="HMMPfam hit to PF01408, Oxidoreductase family, FT NAD-binding Rossmann fold" FT CDS 91977..92984 FT /transl_table=11 FT /gene="rfaC" FT /gene_synonym="waaC" FT /locus_tag="BP0094" FT /product="probable heptosyltransferase" FT /note="Identical to the previously sequenced Bordetella FT pertussis DNA for lipopolysaccharide biosynthesis locus FT RfaC TR:Q45375 (EMBL:X90711) (335 aa) fasta scores: E(): FT 6.2e-133, 100.000% id in 335 aa, and to Bordetella FT bronchiseptica putative heptosyltransferase WaaC TR:O88002 FT (EMBL:AJ007747) (335 aa) fasta scores: E(): 1.3e-132, FT 99.701% id in 335 aa, and Similar to Escherichia coli FT lipopolysaccharide heptosyltransferase-1 RfaC or WaaC or FT Rfa-2 or B3621 SW:RFAC_ECOLI (P24173) (319 aa) fasta FT scores: E(): 7.6e-31, 48.485% id in 297 aa" FT /db_xref="GOA:Q45375" FT /db_xref="InterPro:IPR011908" FT /db_xref="UniProtKB/TrEMBL:Q45375" FT /protein_id="CAE40472.1" FT /translation="MPNRILIVRTSSLGDLVHMLPAISDIARYVPDTQIDWVAEEAFAD FT IPKWHPAVNEVIKVAHRRWRKAWWSEPVRQERRALAERLRSVSYDVVLDMQGLLKSAWL FT VRQTRGVRHGLDWRSAREPLVSLFYNVRHRVEFWQPAVVRQRKLAALTFGYNYAGSPDF FT GLQAFGRAAQADDAPADPGRRMLHLAADRGYAVIMPSASRDDKLWPEDDWRAVFRRLQD FT AGCALRLLAGNEQEAERARVLVAGMEGVEVLPRMDLTSVAQVLAGARLMVGLDSGLTHL FT SAALGRPTIGIYRASTPVRTPLVGPSYTASLGDRGASPSREAVLASVEQALAAA" FT misc_feature 92205..92963 FT /note="HMMPfam hit to PF01075, Glycosyltransferase family 9 FT (heptosyltransferase)" FT CDS 92986..94272 FT /transl_table=11 FT /gene="kdtA" FT /gene_synonym="waaA" FT /locus_tag="BP0095" FT /product="3-deoxy-D-manno-octulosonic-acid transferase" FT /note="Identical to the previously sequenced Bordetella FT pertussis DNA for lipopolysaccharide biosynthesis locus FT KdtA TR:Q45374 (EMBL:X90711) (428 aa) fasta scores: E(): FT 2.9e-167, 100.000% id in 428 aa, and to Bordetella FT bronchiseptica putative 3-deoxy-D-manno-octulosonic-acid FT transferase WaaA TR:O88003 (EMBL:AJ007747) (428 aa) fasta FT scores: E(): 2.1e-166, 99.533% id in 428 aa, and similar to FT Escherichia coli 3-deoxy-D-manno-octulosonic-acid FT transferase KdtA or WaaA or B3633 or Z5057 or ECS4508 FT SW:KDTA_ECOLI (P23282) (425 aa) fasta scores: E(): 8.9e-46, FT 39.450% id in 436 aa" FT /db_xref="GOA:Q45374" FT /db_xref="InterPro:IPR007507" FT /db_xref="UniProtKB/TrEMBL:Q45374" FT /protein_id="CAE40473.1" FT /translation="MGRGVYTLALRGLAPLIWLWMWRRARRAGGQWELFAPARFGRAGA FT RAPAPLAAPVWVHAVSLGETRAAQPLVQALLERGLPVLLTHTTATGRAEGERLFGAAIG FT RGQLQQAWLPYDFPGATRRFLARHAPRCGLLMEREVWPNLLAAARAQGVPMALVSARFS FT ASSLRQAGWLGQALREALAGLDRVLAQTDEDGARLCQAGANAYTVTGSLKFDVALPEAQ FT LRVGHAWAGATGRPVIALASTREGEDAMFIEAIGALQAHRAATPRPLILLIPRHPQRFD FT EAAAQLQAAGLAYARRSAGSGEPGPHIDVLLGDTLGEMPFYYAAADVAIVGGSFARLGG FT QNLIEACAAGTPVIVGPHTFNFKDAARDAIAAGAALRAPDARTALDWALQLLAEPARRQ FT AMSEAARAWTAAHAGATRRTLDALEDWLG" FT misc_feature 93937..94209 FT /note="HMMPfam hit to PF00534, Glycosyl transferases group FT 1" FT CDS complement(94289..94444) FT /transl_table=11 FT /locus_tag="BP0096" FT /product="putative exported protein" FT /note="Identical to the previously sequenced Bordetella FT bronchiseptica putative secreted protein Bblps1.35C FT TR:O88004 (EMBL:AJ007747) (51 aa) fasta scores: E(): FT 2.6e-20, 100.000% id in 51 aa" FT /db_xref="UniProtKB/TrEMBL:Q7W0L7" FT /protein_id="CAE40474.1" FT /translation="MRILFLLIVAANLWVYALGQGWLGLRPADEGRDAARLNQEMKADQ FT VKVLRP" FT misc_feature complement(94370..94435) FT /note="1 probable transmembrane helix predicted for BP0096 FT by TMHMM2.0 at aa 3-25" FT misc_feature complement(94388..94444) FT /note="Signal peptide predicted for BP0096 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.879) with cleavage site FT probability 0.698 between residues 19 and 20" FT CDS complement(94469..95272) FT /transl_table=11 FT /gene="baf" FT /locus_tag="BP0097" FT /product="Bvg accessory factor" FT /note="Identical to the previously sequenced Bordetella FT pertussis Bvg accessory factor Baf SW:BAF_BORPE (Q45338) FT (267 aa) fasta scores: E(): 4.3e-103, 100.000% id in 267 FT aa, and to Bordetella bronchiseptica Bvg accessory factor FT Baf or Bblps1.36C SW:BAF_BORBR (O88005) (54 aa) fasta FT scores: E(): 2.6e-14, 96.296% id in 54 aa" FT /db_xref="GOA:Q45338" FT /db_xref="InterPro:IPR004619" FT /db_xref="UniProtKB/Swiss-Prot:Q45338" FT /protein_id="CAE40475.1" FT /translation="MIILIDSGNSRLKVGWFDPDAPQAAREPAPVAFDNLDLDALGRWL FT ATLPRRPQRALGVNVAGLARGEAIAATLRAGGCDIRWLRAQPLAMGLRNGYRNPDQLGA FT DRWACMVGVLARQPSVHPPLLVASFGTATTLDTIGPDNVFPGGLILPGPAMMRGALAYG FT TAHLPLADGLVADYPIDTHQAIASGIAAAQAGAIVRQWLAGRQRYGQAPEIYVAGGGWP FT EVRQEAERLLAVTGAAFGATPQPTYLDSPVLDGLAALAAQGAPTA" FT CDS complement(95269..96135) FT /transl_table=11 FT /gene="birA" FT /locus_tag="BP0098" FT /product="putative biotin protein ligase" FT /note="Identical to the previously sequenced Bordetella FT pertussis putative biotin protein ligase BirA TR:Q9ZIU6 FT (EMBL:AF016461) (288 aa) fasta scores: E(): 1.2e-110, FT 100.000% id in 288 aa, and Similar to Escherichia coli BirA FT bifunctional protein [includes: biotin operon repressor; FT biotin--[acetyl-coa-carboxylase] synthetase BirA or BioR or FT DhbB or B3973 SW:BIRA_ECOLI (P06709) (321 aa) fasta scores: FT E(): 9.5e-13, 32.130% id in 277 aa" FT /db_xref="GOA:Q9ZIU6" FT /db_xref="HSSP:1BIA" FT /db_xref="InterPro:IPR004408" FT /db_xref="UniProtKB/TrEMBL:Q9ZIU6" FT /protein_id="CAE40476.1" FT /translation="MGAITIAPMSAEVRSLSLPEPAALARAIAARLPAFRDISWVGSTG FT STNADLLARARAGGGARPCLLGAHLQETGRGRAGRPWQNRVGAALMFSCAFDVDLPPSQ FT LPALSPLAGMAACEALRQLVGQPAGLLVKWPNDVQWHDAKLAGVLVESVRNPAGTGHAV FT VIGMGLNLHGGDALSQALQRSVADWNDVAGPGEKGPDAAADLVAAVARAWQDAAHTLQQ FT EGFGAFGARFARVDALAGRPVNVIDRGEILYTGAASGVDDHGRLLVQAADGMRPVSVGE FT ISIRPQA" FT misc_feature complement(95281..95424) FT /note="HMMPfam hit to PF02237, Biotin protein ligase C FT terminal domain" FT misc_feature complement(95497..96021) FT /note="HMMPfam hit to PF01317, Biotin protein ligase FT catalytic domain" FT CDS 96210..97340 FT /transl_table=11 FT /locus_tag="BP0099" FT /product="putative integral membrane protein" FT /note="Similar to Caulobacter crescentus putative ABC FT transporter, permease protein, Cc2318 TR:Q9A5X9 FT (EMBL:AE005902) (371 aa) fasta scores: E(): 2.2e-35, FT 35.925% id in 373 aa, and to Campylobacter jejuni putative FT ABC transport system permease protein iamb or cj1646 FT TR:Q9PM30 (EMBL:AL139079) (369 aa) fasta scores: E(): FT 3.2e-31, 34.451% id in 328 aa" FT /db_xref="InterPro:IPR003453" FT /db_xref="UniProtKB/TrEMBL:Q7W0L6" FT /protein_id="CAE40477.1" FT /translation="MPSLPSTAGAATLSLTLDHGVCHVSGDWSMQALAAPGEVERRRAA FT LARVDPDQRWDLRGVERLDTIGAHLLWGAWGQQLPERVRWSDGQREVFQTLQRNRGEAL FT PAPAPADRWGWLRAIGDAVFDAGRNGRALVIMFGQLVLDLGAFLRRPSRGPWREISAQV FT YRTGAQALGITALVGFLIGVVLSYLSAQQLQMFGADRFIVRLLGVSIVRELGPVLAAIL FT VAGRSGSAITAQIGVMRVTQELDAMLVMGISHGQRLILPRVIALAITMPLLVVWTDAMA FT LLGGMLAAQMQLGVSAQWFLTSLPDAISLTNYWIGMFKGVSFGILIALVACHFGLCIQP FT NTESLGRGTTTSVVTSITGVILVDALYAVIFSSIGI" FT misc_feature 96210..96311 FT /note="Signal peptide predicted for BP0099 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.932) with cleavage site FT probability 0.911 between residues 34 and 35" FT misc_feature 96585..97325 FT /note="HMMPfam hit to PF02405, Domain of unknown function FT DUF140" FT misc_feature join(96711..96779,97023..97091,97149..97217,97254..97322) FT /note="4 probable transmembrane helices predicted for FT BP0099 by TMHMM2.0 at aa 168-190, 272-294, 314-336 and FT 349-371" FT CDS 97340..98179 FT /transl_table=11 FT /locus_tag="BP0100" FT /product="probable ATP-binding component of ABC FT transporter" FT /note="Similar to Pseudomonas aeruginosa probable FT ATP-binding component of ABC transporter Pa3212 TR:Q9HZ28 FT (EMBL:AE004744) (264 aa) fasta scores: E(): 1.3e-42, FT 54.251% id in 247 aa, and to Caulobacter crescentus ABC FT transporter, ATP-binding protein cc2319 TR:Q9A5X8 FT (EMBL:AE005902) (278 aa) fasta scores: E(): 2e-42, 54.032% FT id in 248 aa" FT /db_xref="GOA:Q7W0L5" FT /db_xref="InterPro:IPR005829" FT /db_xref="UniProtKB/TrEMBL:Q7W0L5" FT /protein_id="CAE40478.1" FT /translation="MGSVAQQNLFSATDLAVAPVIAVRGLRTAFGDHVVHDNLDLSVYP FT GEILALVGGSGTGKTVLLRQIIGLERPAAGTIEVLGRRVQELEPAERRRLSHRWGMLFQ FT AGALFSSLSVFDNVALPLRELRTVPEDLVCDVVMCRLAMVGLTSKDADKRPADLSGGMV FT KRVALARALSLDPELLFLDEPTAGLDPLRSDEFVDLVRSLHRQLGFTVVMVTHDLDTLL FT ALATRVAVLADKRVIVCDTVREVLKVDHPFIRSFFLGERGRRALGDLAPKETGNGKP" FT misc_feature 97475..98041 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 97496..97519 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 97556..97609 FT /note="ScanRegExp hit to PS00216, Sugar transport proteins FT signature 1." FT CDS join(98166..98852,98854..99111) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0101" FT /product="putative exported protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 229. The sequence has been checked FT and believed to be correct. Similar to Pseudomonas FT aeruginosa hypothetical protein Pa3213 TR:Q9HZ27 FT (EMBL:AE004744) (312 aa) fasta scores: E(): 2.3e-13, FT 28.115% id in 313 aa, and to Campylobacter jejuni possible FT ABC transport system periplasmic substrate-binding protein FT Cj1648 TR:Q9PM28 (EMBL:AL139079) (296 aa) fasta scores: FT E(): 3.8e-11, 28.634% id in 227 aa" FT /db_xref="PSEUDO:CAE40479.1" FT misc_feature 98166..98240 FT /note="Signal peptide predicted for BP0101 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.352 between residues 25 and 26" FT misc_feature 98193..98597 FT /note="HMMPfam hit to PF02470, mce related protein" FT variation 98850..98851 FT /note="CA in pertussis; CA(GG) in parapertussis and FT bronchiseptica" FT CDS 99112..99714 FT /transl_table=11 FT /locus_tag="BP0101A" FT /product="putative exported protein" FT /note="Similar to Agrobacterium tumefaciens Agr_c_3031p FT TR:AAK87420 (EMBL:AE008086) (201 aa) fasta scores: E(): FT 2.5e-05, 31.551% id in 187 aa, and to Rhizobium meliloti FT hypothetical protein Smc00177 TR:CAC46409 (EMBL:AL591788) FT (204 aa) fasta scores: E(): 0.00019, 28.042% id in 189 aa" FT /db_xref="InterPro:IPR005586" FT /db_xref="UniProtKB/TrEMBL:Q7W0L4" FT /protein_id="CAE40480.1" FT /translation="MDMKKAIIVLSALLLAGCGAGRMAAPPALFDLGADVAATPALPAR FT QPIVLAFEAVPYLSDTGVIWRVGDSASPHAYARSRWASAPAELVRQRLVERLSHQGPVL FT GAGMGAGLAQVQVTLTFEQVFAADGQASVGHVAMQAVLLQDRQVVGQVRIAREAPAATQ FT DAAGGVQALRQATDAAADELAGWLAGRVAAAGARAGS" FT misc_feature 99112..99183 FT /note="Signal peptide predicted for BP0101 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.988 between residues 24 and 25" FT misc_feature 99133..99165 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 99744..100397 FT /transl_table=11 FT /locus_tag="BP0101B" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nmb0868 TR:Q9JZW7 (EMBL:AE002439) (213 aa) fasta FT scores: E(): 4.5e-24, 43.578% id in 218 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa4440 FT TR:Q9HVX5 (EMBL:AE004858) (209 aa) fasta scores: E(): FT 2.9e-19, 40.909% id in 220 aa" FT /db_xref="UniProtKB/TrEMBL:Q7W0L3" FT /protein_id="CAE40481.1" FT /translation="MSARTETQVFTGAAGSIDCAIDWPAHAPRGWALVLHPHSLQGGAR FT DNKVVTTVARACVQHGLAAVRPNFRGVGESAGEFDKSIGETEDMLALVAQVRERYPEFA FT ASPWVLGGFSFGTAVAAQTYAALAASGDPSLPRALMLMGPAVNRFERSATEVPADTLLV FT HGEVDDVVPLAEALEWARPRSLPVVVVPGASHFFHGKLLVLRQLVQDRLRIALD" FT CDS 100530..101786 FT /transl_table=11 FT /locus_tag="BP0102" FT /product="putative penicillin-binding protein precursor" FT /EC_number="3.4.16.4" FT /note="Similar to Escherichia coli penicillin-binding FT protein 6 precursor DacC or B0839 SW:DACC_ECOLI (P08506) FT (400 aa) fasta scores: E(): 3.9e-51, 46.703% id in 364 aa, FT and to Pseudomonas aeruginosa penicillin-binding protein 5 FT precursor DacA or DacC or PA3999 TR:Q9X6V7 (EMBL:AF147448) FT (386 aa) fasta scores: E(): 1.3e-54, 45.528% id in 369 aa" FT /db_xref="GOA:Q7W0L2" FT /db_xref="HSSP:1HD8" FT /db_xref="InterPro:IPR018044" FT /db_xref="UniProtKB/TrEMBL:Q7W0L2" FT /protein_id="CAE40482.1" FT /translation="MKTLPDTAIAPVVLSRRVLASAVLAAMLAAAAPAGAQQQAAPATP FT VAAAAPAAGGAVGAVGDLAAVPVPTIAAKAWITVDVNSGQVLAASNADMKVEPASLTKI FT MTAYVVFNALQEKRLTLEQQVPVSEHAWRTGGSRMFIEPRKPVTVDELNQGMIVQSGND FT ASVALAEAVGGSESAFAALMNQEAQRLGMRNTHFMNSTGLPDPQHVTTARDLATLAAHL FT ISDYPDYYHYYKQKSYTYNKITQPNRNRLLWADPSVDGMKTGHTDSAGYCLVSTAMRGD FT RRILTVLVGADSEATRAEESLKLLNWSFQNFDTVKLYDQSQPGLDARVWEGKVENVKLG FT PPNPVWLAVPRGKAAEIKPVAQRTDPLVAPLTKGQQVGTLQLTLDGKTLRVEPLVVQED FT VERAGFFGRMADTVKRWFQ" FT misc_feature 100530..100637 FT /note="Signal peptide predicted for BP0102 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.908 between residues 36 and 37" FT misc_feature 100704..101471 FT /note="HMMPfam hit to PF00768, D-alanyl-D-alanine FT carboxypeptidase" FT CDS 101834..102733 FT /transl_table=11 FT /locus_tag="BP0103" FT /product="probable class IV aminotransferase" FT /note="Similar to Staphylococcus aureus D-alanine FT aminotransferase TR:Q9KWZ6 (EMBL:Y14816) (282 aa) fasta FT scores: E(): 3.7e-37, 38.849% id in 278 aa, and to FT Staphylococcus haemolyticus D-alanine aminotransferase Dat FT SW:DAAA_STAHA (P54694) (282 aa) fasta scores: E(): 1.1e-38, FT 38.989% id in 277 aa" FT /db_xref="GOA:Q7W0L1" FT /db_xref="HSSP:1DAA" FT /db_xref="InterPro:IPR000111" FT /db_xref="UniProtKB/TrEMBL:Q7W0L1" FT /protein_id="CAE40483.1" FT /translation="MPAPILSKELPMIPGMPGDSQVYLNGEFTRLDEAKISVLDRGFIF FT GDGIYEVVPVYDGKVFRMTEHLNRLDRSLAALRIAAPMDRAGWESVIAGLIARSAQPTC FT IIYLQVTRGVCKRDHAFPTEPITPTVFGMAAAFSPPGAAQRTQGLSAIAIDDERWLHCE FT IKSVSLLGNVLAKQQAVDAGVDEVVQFRDGWLTEGSSTNIWVVSGGKLLAPPKNNLILE FT GIRYGLMGELAEAAGLPFEARRISREEVLAADELMLTSATKEVLPIVRLDGKAVGAGKP FT GPVYEQLRAGYDARIAAL" FT misc_feature 101906..102712 FT /note="HMMPfam hit to PF01063, Aminotransferase class IV" FT CDS 102809..103084 FT /transl_table=11 FT /locus_tag="BP0104" FT /product="conserved hypothetical protein" FT /note="Similar to Neisseria meningitidis hypothetical FT protein Nma1380 or Nmb1218 TR:Q9JRI4 (EMBL:AL162755) (91 FT aa) fasta scores: E(): 4.4e-11, 46.988% id in 83 aa, and to FT Escherichia coli hypothetical protein YbeD or B0631 or FT Z0776 or ECS0669 SW:YBED_ECOLI (P30977) (87 aa) fasta FT scores: E(): 4.4e-06, 38.554% id in 83 aa" FT /db_xref="InterPro:IPR007454" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0L0" FT /protein_id="CAE40484.1" FT /translation="MHNIPPEESLIEYPSDFPIKVMGKQHPEFAQTLTEVVLQFDPGFD FT PASVEMRPSKGGNYLGLTFTVRATSREQLDSLYRALHGHPMVSIVL" FT CDS 103092..103754 FT /transl_table=11 FT /gene="lipB" FT /locus_tag="BP0105" FT /product="lipoate-protein ligase B" FT /EC_number="6.-.-.-" FT /note="Similar to Escherichia coli lipoate-protein ligase B FT LipB or B0630 SW:LIPB_ECOLI (P30976) (213 aa) fasta scores: FT E(): 3.3e-32, 54.386% id in 171 aa, and to Vibrio cholerae FT lipoate-protein ligase B LipB or VC0944 SW:LIPB_VIBCH FT (Q9KTF8) (219 aa) fasta scores: E(): 2.1e-34, 50.500% id in FT 200 aa" FT /db_xref="GOA:Q7W0K9" FT /db_xref="InterPro:IPR000544" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0K9" FT /protein_id="CAE40485.1" FT /translation="MIKWLARPADYASVWDAMKTFTAARGPGTADEIWLCEHAPVYTLG FT QVGRPEHLLNPGLIPVVHCDRGGQVTYHGPGQVLAYTLFDLRRAGLYVREYVDMLEQAT FT LATLRELGLEQACRKPGAPGIYVPQPGGELAKIAALGVKVRNGYAYHGLALNIDMDLSP FT FLGINPCGYEGLRTVDLAACGVRTSVERAGELLAAQLARAHGQAVQQRAAALAGVPG" FT misc_feature 103158..103604 FT /note="HMMPfam hit to PF02111, Lipoate-protein ligase B" FT misc_feature 103287..103334 FT /note="ScanRegExp hit to PS01313, Lipoate-protein ligase B FT signature. Confirmed by InterPro eMOTIF pattern match." FT CDS 103816..104817 FT /transl_table=11 FT /gene="lipA" FT /gene_synonym="lip" FT /locus_tag="BP0106" FT /product="lipoic acid synthetase" FT /note="Similar to Escherichia coli lipoic acid synthetase FT LipA or Lip or B0628 SW:LIPA_ECOLI (P25845) (321 aa) fasta FT scores: E(): 5.8e-77, 63.091% id in 317 aa, and to FT Burkholderia pseudomallei lipoate synthetase TR:Q9EYP3 FT (EMBL:AF317284) (288 aa) fasta scores: E(): 9.7e-90, FT 83.333% id in 282 aa" FT /db_xref="GOA:Q7W0K8" FT /db_xref="InterPro:IPR007197" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0K8" FT /protein_id="CAE40486.1" FT /translation="MSTLVESPVPSNDSQAAAPAAYDPTQKQKSQAKTARIPIKVVAAE FT KLKKPEWIRVRAAAPGSRFYDIKRILREHNLHTVCEEASCPNIGECFGKGTATFMIMGD FT KCTRRCPFCDVGHGRPDPLDTQEPENLARTIAALKLSYVVITSVDRDDLRDGGAAHFVE FT CIAKVREYSPDTRIEVLVPDFRGRLDRALHILNSGPPDVMNHNLETVPRLYKQARPGSD FT YAHSLKLLAEFKKLHPEVPTKSGLMLGLGETDEEILQVMRDMREHNVDMLTIGQYLQPS FT EHHLPVLRYVHPDTFAMFEREAYAMGFTHAAVGAMVRSSYHADQQAHAAGVN" FT misc_feature 104026..104793 FT /note="HMMPfam hit to PF02546, Lipoate synthase" FT CDS complement(104832..105380) FT /transl_table=11 FT /gene="rfbC" FT /gene_synonym="rmlC" FT /locus_tag="BP0107" FT /product="dTDP-4-dehydrorhamnose 3,5-epimerase" FT /EC_number="5.1.3.13" FT /note="Similar to Escherichia coli dTDP-4-dehydrorhamnose FT 3,5-epimerase RfbC or RmlC or B2038 SW:RFBC_ECOLI (P37745) FT (185 aa) fasta scores: E(): 8.2e-34, 52.326% id in 172 aa, FT and to Pseudomonas aeruginosa dTDP-4-dehydrorhamnose FT 3,5-epimerase RmlC or PA5164 TR:Q9HU21 (EMBL:AE004929) (181 FT aa) fasta scores: E(): 4.6e-49, 64.641% id in 181 aa" FT /db_xref="GOA:Q7W0K7" FT /db_xref="HSSP:1DZR" FT /db_xref="InterPro:IPR014710" FT /db_xref="UniProtKB/TrEMBL:Q7W0K7" FT /protein_id="CAE40487.1" FT /translation="MKLTPLAIADVVLIEPQVFGDERGCFFESFNQDRLDAQLGRRIRF FT VQDNHSCSRAGVLRGLHYQILHPQAKLVRVVAGEAYDVAVDLRRGSPTFGRWTGAYLSA FT RNRHQLWIPEGFAHGFLALSDDTECLYKATDYYAPEHERCVRWDDPQLKVDWPLQGQAP FT ILSVKDRQGVALARADTYA" FT misc_feature complement(104847..105374) FT /note="HMMPfam hit to PF00908, dTDP-4-dehydrorhamnose FT 3,5-epimerase" FT CDS complement(105438..106334) FT /transl_table=11 FT /gene="rfbD" FT /gene_synonym="rmlD" FT /locus_tag="BP0108" FT /product="dTDP-4-dehydrorhamnose reductase" FT /EC_number="1.1.1.133" FT /note="Similar to Escherichia coli dTDP-4-dehydrorhamnose FT reductase RfbD or RmlD or B2040 SW:RBD1_ECOLI (P37760) (299 FT aa) fasta scores: E(): 2.6e-40, 44.444% id in 297 aa, and FT to Pseudomonas aeruginosa dTDP-4-dehydrorhamnose reductase FT RmlD or PA5162 TR:Q9HU23 (EMBL:AE004929) (302 aa) fasta FT scores: E(): 7.8e-44, 47.651% id in 298 aa" FT /db_xref="GOA:Q7W0K6" FT /db_xref="HSSP:1KBZ" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7W0K6" FT /protein_id="CAE40488.1" FT /translation="MNILLLGRTGQIGDALLAHPPAWARLAALDRRQADLRDLGRLAAV FT LDAYAPRILINAAAYTEVDRAEAEPELALRINAQAVAVMADYARRNNALLVHYSTDYVF FT DGKRARAYRETDAAHPLNAYGRSKLAGEQAIAASGCPHLILRTSWVYASHGANFVKTIL FT RLARTRAELSVVADQHGAPIWAGRIAAVTWQAIDAHRRRRLPDGLWHLSAGGHVSWHGL FT ACHIVARARRAGLALSLDPAHIRPVTAAQYPLPAPRPANSRLDCGALRDALEPELPDWQ FT VDLDAVVDALAARAHTL" FT CDS complement(106331..107392) FT /transl_table=11 FT /gene="rfbB" FT /gene_synonym="rmlB" FT /locus_tag="BP0109" FT /product="dTDP-glucose 4,6-dehydratase" FT /EC_number="4.2.1.46" FT /note="Similar to Escherichia coli dTDP-glucose FT 4,6-dehydratase RfbB or RmlB or B2041 SW:RBB1_ECOLI FT (P37759) (361 aa) fasta scores: E(): 4.6e-73, 52.925% id in FT 359 aa, and to Pseudomonas aeruginosa dTDP-D-glucose FT 4,6-dehydratase RmlB or PA5161 TR:Q9HU24 (EMBL:AE004929) FT (352 aa) fasta scores: E(): 4e-92, 64.672% id in 351 aa" FT /db_xref="GOA:Q7W0K5" FT /db_xref="HSSP:1BXK" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7W0K5" FT /protein_id="CAE40489.1" FT /translation="MSILVTGGAGFIGSNFVLGWLASGDEPVINLDLLTYAGNAANLAA FT LRDDPRHLLVHGDIADAPLVRRLLREHRPRAIVNFAAESHVDRAIRAPDAFVQTNVVGT FT FTLLEAARAYCTEQDAAAAAAFRFLHVSTDEVYGSLAPQAAPFTETHPYQPNNPYSASK FT AASDHMVRSYRHTYGLPAITTHCCNNYGPRQFPEKLIPLVIHHALAGRALPLYGDGMHV FT RDWLYVVDHCAALECVLRDGQPGQTYNIGAHCERTNLEVVHAVCALLDQWRARPDGQPH FT AGGIAFIPERPGHDRRYAIDAGKIQRELGWRAATSFEAGLRETVRWYLDHPQWVADIAS FT GAYRHWLDTHYGT" FT misc_feature complement(106397..107386) FT /note="HMMPfam hit to PF01370, NAD dependent FT epimerase/dehydratase family" FT misc_feature complement(106871..106957) FT /note="ScanRegExp hit to PS00061, Short-chain FT dehydrogenases/reductases family signature." FT CDS complement(107428..108378) FT /transl_table=11 FT /locus_tag="BP0110" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7W0K4" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7W0K4" FT /protein_id="CAE40490.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHN" FT repeat_region 107428..107455 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(107428..108480) FT misc_feature complement(107464..107997) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(108055..108120) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(108449..108480) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(join(108477..109043,109045..109104)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0111" FT /product="putative membrane protein (pseudogene)" FT /note="Similar to Bacillus halodurans hypothetical protein FT Bh0429 SWALL:Q9KFP9 (EMBL:AP001508) (207 aa) fasta scores: FT E(): 7.9e-30, 46.5% id in 200 aa." FT /db_xref="PSEUDO:CAE40491.1" FT misc_feature complement(join(108486..108542,108579..108644, FT 108690..108755,108840..108905,108936..109001)) FT /note="5 probable transmembrane helices predicted for FT BP0111 by TMHMM2.0 at aa 7-29, 39-61, 89-111, 126-148 and FT 160-179" FT misc_feature complement(108567..108896) FT /note="HMMPfam hit to PF01810, LysE type translocator" FT misc_feature complement(108903..109022) FT /note="Signal peptide predicted for BP0111 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.944) with cleavage site FT probability 0.242 between residues 40 and 41" FT CDS 109278..110471 FT /transl_table=11 FT /gene="metC" FT /locus_tag="BP0112" FT /product="cystathionine beta-lyase" FT /EC_number="4.4.1.8" FT /note="Similar to Bordetella avium cystathionine beta-lyase FT MetC SW:METC_BORAV (Q07703) (395 aa) fasta scores: E(): FT 1.1e-130, 79.747% id in 395 aa, and to Escherichia coli FT cystathionine beta-lyase MetC or B3008 SW:METC_ECOLI FT (P06721) (395 aa) fasta scores: E(): 5.5e-48, 36.567% id in FT 402 aa. Also similar to BP0815, 42.784% identity in 388 aa FT overlap" FT /db_xref="GOA:Q7W0K3" FT /db_xref="HSSP:1GC0" FT /db_xref="InterPro:IPR015422" FT /db_xref="UniProtKB/TrEMBL:Q7W0K3" FT /protein_id="CAE40492.1" FT /translation="MTDESRHIDTLLQHLGTAPFDPDTGAAPVNLPSMRASTVRFRDLA FT ALEQAQRRKAGGDRAVTYGRMGMDTHAALEHVFKELEAGTHCYLASSGMGAVTMAFLSL FT LSAGEHALVADCVYGPVYELDNAVLKRMGIELTFFAPGDDLQALVRPNTRLLYVESPGS FT LLFQMLDLPALAEFARRNQLVLATDNTWGSGYIYRPLELGAQVSVIAGTKYVGGHSDLM FT LGAVVTNDEAVAQRLNRTQYAMGYSVSADDAWLALRGVRTLPIRMAQHARHAQRVCEFL FT QGRPEVARIYHPAWPQDPGHALWLRDCSGSNGMLTVELRLSQPAARVFVESLQLFDIGF FT SWGGFESLVQLVTPGELARHRYWQGGGNALVRLHIGLESPEDVIADLTQALARAASA" FT misc_feature 109302..110453 FT /note="HMMPfam hit to PF01053, Cys/Met metabolism FT PLP-dependent enzyme" FT misc_feature 109890..109934 FT /note="ScanRegExp hit to PS00868, Cys/Met metabolism FT enzymes pyridoxal-phosphate attachment site. Confirmed by FT InterPro eMOTIF pattern match." FT CDS complement(110553..111182) FT /transl_table=11 FT /gene="dsbA" FT /locus_tag="BP0113" FT /product="thiol:disulfide interchange protein DsbA FT precursor" FT /note="Similar to Burkholderia cepacia thiol:disulfide FT interchange protein DsbA precursor SW:DSBA_BURCE (Q9RHV8) FT (212 aa) fasta scores: E(): 1e-22, 36.620% id in 213 aa, FT and to Azotobacter vinelandii thiol:disulfide interchange FT protein DsbA precursor SW:DSBA_AZOVI (Q44504) (214 aa) FT fasta scores: E(): 2.5e-22, 37.619% id in 210 aa" FT /db_xref="GOA:Q7W0K2" FT /db_xref="InterPro:IPR012335" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0K2" FT /protein_id="CAE40493.1" FT /translation="MQSTTFTRLLAAAALGATTLFAPATQAQGAQQYVNINPPMPSDTP FT GKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIAFNAGMKPLQQLYYTLQA FT LERPDLHPKVFTAIHTERKRLFDKKAMGEWAASQGVDRAKFDSVFDSFSVQTQVQHASQ FT LAEAAHIDGTPAFAVGGRYMTSPVLAGNDYAGALKVVDQLIVQSRK" FT misc_feature complement(110562..111167) FT /note="HMMPfam hit to PF01323, DSBA oxidoreductase" FT misc_feature complement(110979..111035) FT /note="ScanRegExp hit to PS00194, Thioredoxin family active FT site." FT misc_feature complement(111102..111182) FT /note="Signal peptide predicted for BP0113 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.862 between residues 27 and 28" FT CDS complement(111244..111927) FT /transl_table=11 FT /locus_tag="BP0114" FT /product="putative exported protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa5052 TR:Q9HUC7 (EMBL:AE004918) (231 aa) fasta FT scores: E(): 0.001, 28.807% id in 243 aa, and to Xylella FT fastidiosa hypothetical protein Xf0146 TR:Q9PH00 FT (EMBL:AE003868) (252 aa) fasta scores: E(): 6.8e-05, FT 29.167% id in 192 aa" FT /db_xref="InterPro:IPR007730" FT /db_xref="UniProtKB/TrEMBL:Q7W0K1" FT /protein_id="CAE40494.1" FT /translation="MATKRKSTRRSKERGSTMYGVLAGLLIGLIVAAAVAFYVTKAPMP FT FVDRATRQPDQGKLPDPRNAPDPNQGLYGRDGAAGTPPTGPTATAPSPLPGVTPGAPSR FT QPDDLGALIATLPNLDRAPAPAATPAPAAKSAKPAAPAASATPAAPASGTYFLQAGAYR FT VLEDAEALRARIILLGLPVVMQRAEVNGVQVNRVRVGPFGRLDDMNRARSRLGENDIKS FT AVVRQ" FT misc_feature complement(111805..111927) FT /note="Signal peptide predicted for BP0114 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.460 between residues 41 and 42" FT CDS complement(111937..113724) FT /transl_table=11 FT /gene="argS" FT /locus_tag="BP0115" FT /product="arginyl-tRNA synthetase" FT /note="Similar to Xylella fastidiosa arginyl-tRNA FT synthetase Xf0147 TR:Q9PGZ9 (EMBL:AE003868) (586 aa) fasta FT scores: E(): 4e-103, 52.700% id in 537 aa, and to FT Staphylococcus aureus subspaureus N315. arginyl-tRNA FT synthetase ArgS or Sa0564 TR:Q99W05 (EMBL:AP003131) (553 FT aa) fasta scores: E(): 9.9e-65, 40.603% id in 564 aa" FT /db_xref="GOA:Q7W0K0" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0K0" FT /protein_id="CAE40495.1" FT /translation="MRGHLRQTPGRPPGGSARPAARQTCRRHLPFCRLPMLLEQQKQLI FT SLIQAAVAQCLPEAQAQVQLERPKVAAHGDIATNVAMQLAKPARRNPRELAQGIVDALM FT AQPQARELIQDAEIAGPGFINFRLTPAARQAVVQAVASQADAYGRAPRNGEKVLVEFVS FT ANPTGPLHVGHARQAALGDAICRLYDASGWDVTREFYYNDAGNQIDNLAISVQARGRGI FT APDAPDYPADGYKGDYIVEIARDFAARKSVQASDGQPVTATGDLDSLDDIRAFAVAYLR FT REQDLDLQAFGLAFDNYFLESSLYASGRVQETVDTLVAKGHTYEEGGALWLRTTELGTG FT DDKDRVMRKSEGGYTYFVPDVAYHKVKWERGFHHAVNIQGSDHHGTVARVRAGLQGLAG FT IPKDFPAYVLHKMVKVMRGGEEVKISKRAGSYVTMRDLIDWVGRDAVRYFLIQRRADTE FT FVFDIDLALSKSDENPVYYIQYAHARICTMIGNSGASAAEIAQADTALLTAPSEYALLQ FT RLAEFPQVVALAAQELAPHHVAFWLRDCASDFHAWYNAERVLVDEPALKLARLRLAATT FT RQVLANGLALLGVSAPDRM" FT misc_feature complement(111940..113601) FT /note="HMMPfam hit to PF00750, tRNA synthetases class I FT (R)" FT misc_feature complement(113200..113229) FT /note="ScanRegExp hit to PS00178, Aminoacyl-transfer RNA FT synthetases class-I signature. Confirmed by InterPro eMOTIF FT pattern match." FT CDS 113874..114254 FT /transl_table=11 FT /locus_tag="BP0116" FT /product="conserved hypothetical protein" FT /note="Similar to Ralstonia solanacearum hypothetical FT protein Rsc0288 or Rs03255 SWALL:Q8Y2P7 (EMBL:AL646058) FT (105 aa) fasta scores: E(): 0.0019, 32.74% id in 113 aa" FT /db_xref="InterPro:IPR014991" FT /db_xref="UniProtKB/TrEMBL:Q7W0J9" FT /protein_id="CAE40496.1" FT /translation="MYEIIRMGVRNMLITFHSKVAAEVLMRTDDAAPLLRAAGKSFRDA FT IPERGVFTADQLQSAITGLERAIAAADRSPPDDDEPHPDKEPVHPIELAVGLHQRAFPL FT LDMMRKTAAAGADLTWEVSRGW" FT CDS 114303..114662 FT /transl_table=11 FT /locus_tag="BP0117" FT /product="hypothetical protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7W0J8" FT /protein_id="CAE40497.1" FT /translation="MRRDAPAPPPGDPSMRSEVTVVFDARRTVDLSVDVEPSVQAAAAA FT RDWFDSAWEMLGCEPLRPSGKVLLLDKILGVADALGYDTLSGDAKESREFAEQAALALG FT KARIVVDLPGLMVGH" FT repeat_region 114760..115984 FT /note="Insertion sequence" FT CDS 114945..115961 FT /transl_table=11 FT /locus_tag="BP0118" FT /product="transposase for IS1663" FT /note="Similar to Neisseria meningitidis putative FT invertase/transposase nma1800 TR:Q9JTF3 (EMBL:AL162757) FT (318 aa) fasta scores: E(): 2e-17, 28.48% id in 316 aa and FT Acinetobacter spSE19. pilin inverting protein chnY FT TR:Q9F7E1 (EMBL:AF282240) (324 aa) fasta scores: E(): FT 8.2e-50, 47.516% id in 322 aa" FT /db_xref="GOA:Q7TTN4" FT /db_xref="InterPro:IPR003346" FT /db_xref="UniProtKB/TrEMBL:Q7TTN4" FT /protein_id="CAE40498.1" FT /translation="MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKCKTKVVVN FT TAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQAATALPQVRVSLVNPAQARDFAKA FT LALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELNRKE FT KSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQ FT AGNAILAVMHNRHIDSAQSLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAA FT LVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLCFGVLKNRIPYQPNYAMNG" FT misc_feature 115197..115484 FT /note="HMMPfam hit to PF01548, Transposase" FT misc_feature 115497..115829 FT /note="HMMPfam hit to PF02371, Transposase FT IS116/IS110/IS902 family" FT CDS complement(116037..116837) FT /transl_table=11 FT /locus_tag="BP0119" FT /product="inner membrane component of FT binding-protein-dependent transport system" FT /note="Similar to Thermotoga maritima sugar ABC FT transporter, permease protein Tm0598 TR:Q9WZ67 FT (EMBL:AE001734) (277 aa) fasta scores: E(): 3.9e-36, FT 43.860% id in 228 aa, and to Rhizobium meliloti putative FT sugar ABC transporter permease protein Smb20233 TR:CAC48624 FT (EMBL:AL603642) (282 aa) fasta scores: E(): 2.5e-30, FT 34.717% id in 265 aa" FT /db_xref="GOA:Q7W0J7" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7W0J7" FT /protein_id="CAE40499.1" FT /translation="MNRTLDTLGAWLLGLLWILPLAYAAWAAFHPPAYATRFDLLAPLT FT LENFARAWNAAPFPRYFLNTFLLVTMVLAAQLVLSTLAGYAFARFEFRGRDFVFMLVLL FT QLMVMPDVLLVENYRSMSLLGVRDTVFAVGLPYFASAFGIFLLRQTFKTVPRELEEAAR FT VEGASPWQVLMKVYVPLARPIYVAYGLVSVSHHWNNFLWPLIITNSVESRPLTVGLQVF FT SSTDQGIDWSVITAATLLSAAPLLVGFLLFQRQFVQSFMRAGIR" FT misc_feature complement(join(116079..116144,116220..116285, FT 116397..116447,116493..116546,116574..116639, FT 116751..116816)) FT /note="6 probable transmembrane helices predicted for FT BP0119 by TMHMM2.0 at aa 7-29, 66-88, 97-115, 130-147, FT 184-206 and 231-253" FT misc_feature complement(116160..116390) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature complement(116301..116387) FT /note="ScanRegExp hit to PS00402, Binding-protein-dependent FT transport systems inner membrane comp. sign. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature complement(116766..116837) FT /note="Signal peptide predicted for BP0119 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.983) with cleavage site FT probability 0.879 between residues 24 and 25" FT CDS complement(116834..117709) FT /transl_table=11 FT /locus_tag="BP0120" FT /product="inner membrane component of FT binding-protein-dependent transport system" FT /note="Similar to Erwinia chrysanthemi inner membrane FT protein togM TR:CAC44118 (EMBL:AJ305144) (296 aa) fasta FT scores: E(): 9.7e-31, 37.091% id in 275 aa, and to FT Rhizobium loti permease protein of sugar ABC transporter FT mll1715 TR:Q98JZ2 (EMBL:AP002998) (307 aa) fasta scores: FT E(): 6.2e-41, 40.569% id in 281 aa" FT /db_xref="GOA:Q7W0J6" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7W0J6" FT /protein_id="CAE40500.1" FT /translation="MSRTTQAVYGWLLLLPAVVLLAAFTHYPALATLWHSFFSTPKGSR FT PARFVGLENYALLRDDPVFWQSLWNNLWFALGTIPTSIAIALAMALWVNGKLHGRGFLR FT MAYFTPTVLPMVAVANIWLFFYTPQYGLIAQVMQWFGLAGPNWLGSRDTALPALMMVTV FT WKESGFFMIFYLAALQTVSPSLREAAMLEGASRWQYFRRVLWPLLMPTTLFVLVNALIN FT AFRLVDHVVVMTRGGPDNASTLLLFYIYQVGFSFWDTAYAATLTVVLLAVLAATALIKF FT RWLDRRTHYQ" FT misc_feature complement(join(116867..116932,117047..117112, FT 117176..117241,117341..117406,117428..117493, FT 117623..117688)) FT /note="6 probable transmembrane helices predicted for FT BP0120 by TMHMM2.0 at aa 7-29, 72-94, 101-123, 156-178, FT 199-221 and 259-281" FT misc_feature complement(116957..117181) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT misc_feature complement(117644..117709) FT /note="Signal peptide predicted for BP0120 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.912) with cleavage site FT probability 0.365 between residues 22 and 23" FT CDS complement(117720..119012) FT /transl_table=11 FT /locus_tag="BP0121" FT /product="probable extracellular solute-binding protein" FT /note="Similar to Escherichia coli FT glycerol-3-phosphate-binding periplasmic protein precursor FT UgpB or B3453 SW:UGPB_ECOLI (P10904) (438 aa) fasta scores: FT E(): 1.1e-30, 29.120% id in 443 aa, and to Thermotoga FT maritima glycerol-3-phosphate ABC transporter, periplasmic FT glycerol-3- phosphate-binding protein Tm1120 TR:Q9X0K4 FT (EMBL:AE001770) (436 aa) fasta scores: E(): 3.1e-35, FT 31.829% id in 421 aa" FT /db_xref="GOA:Q7W0J5" FT /db_xref="InterPro:IPR006059" FT /db_xref="UniProtKB/TrEMBL:Q7W0J5" FT /protein_id="CAE40501.1" FT /translation="MRRIVLKTLAAGLAGAFLALPAQAQQPVEVEFYYPVAVGGPITKI FT VDDMVADFHKENPDIRIKPIYAGTYQDSIAKALTALKGGTPPQLAVLLSTDMFTLIDED FT AIVPVDGLAKSDADKKWLGGFYDAFMQNSRTGGHVWGVPFQRSTIVMYYNKDLFKEAGL FT DPERAPATWDELVEYGKKLTKKDANGNVSQWGIKIPSGGAFAYWLFQALTTPNDAILMN FT EEGSQVYLDKPAVVEAAQFWQDLSVKHGVMPKGTIDWGTTPKDFLEKKAAIVWTTTGNL FT TNIRKNADFPFGVAMMPKKKRGGSPTGGGNFYIFKSGTPAQQQAALKFAQWATTPERAA FT DWSIATGYVAVTPAAWQTERMKKYAQEVPAATMARDQLEVSVAEFSTHENQRVTKVLND FT ALQAALTGSKTPQQALTDAQREADRVLRSYK" FT misc_feature complement(117741..118607) FT /note="HMMPfam hit to PF01547, Bacterial extracellular FT solute-binding protein" FT misc_feature complement(118941..119012) FT /note="Signal peptide predicted for BP0121 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 24 and 25" FT CDS complement(119055..120095) FT /transl_table=11 FT /locus_tag="BP0122" FT /product="sugar ABC transporter, ATP-binding protein" FT /note="Similar to Thermococcus litoralis trehalose/maltose FT transport ATP-hydrolyzing subunit MalK TR:Q9V306 FT (EMBL:AF126010) (372 aa) fasta scores: E(): 7.4e-44, FT 45.205% id in 365 aa, and to Rhizobium meliloti probable FT glycerol-3-phosphate ABC transporter ATP-binding protein FT TR:CAC48805 (EMBL:AL603643) (349 aa) fasta scores: E(): FT 2.1e-49, 50.000% id in 352 aa" FT /db_xref="GOA:Q7W0J4" FT /db_xref="HSSP:1G29" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q7W0J4" FT /protein_id="CAE40502.1" FT /translation="MSHLVLDDLTKQYGEAAAISGVSFTAPAGSFTVLLGPSGCGKSTT FT LRMIAGLDTPTSGRIRIGDRDVTDLPPAKRRISMVFQSYALFPHLSVRENILFGLKVRK FT EPARDYERRLARVAGLLGLQALLDRKPAQLSGGQQQRVALGRAVISEAPVCLMDEPLSN FT LDAQLRHDMRREIRALQQELGITMVYVTHDQTEAMSMADQVVLMRGGRIEQLDTPDGLY FT ARPATEFAARFIGTPPMNLIALDTHDGRPVVAGTQGPALANAPAGAVTLGLRPEHIRID FT ADGMPAVIESVEYFGADSVAVCRLGSCGGVAVRVNGHLRSAPGTAVGLAWPDERQHFFA FT ADAAVL" FT misc_feature complement(119466..120011) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(119652..119696) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature." FT misc_feature complement(119967..119990) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(120201..121022) FT /transl_table=11 FT /locus_tag="BP0123" FT /product="putative cAMP phosphodiesterase" FT /note="Similar to Escherichia coli Icc protein or B3032 or FT Z4389 or ECS3920 SW:ICC_ECOLI (P36650) (275 aa) fasta FT scores: E(): 1.7e-14, 27.509% id in 269 aa, and to FT Rhizobium loti 3',5'-cyclic-nucleotide phosphodiesterase FT CpdA or Mll3631 TR:Q98FT1 (EMBL:AP003002) (305 aa) fasta FT scores: E(): 7.1e-25, 36.078% id in 255 aa" FT /db_xref="GOA:Q7W0J3" FT /db_xref="InterPro:IPR004843" FT /db_xref="UniProtKB/TrEMBL:Q7W0J3" FT /protein_id="CAE40503.1" FT /translation="MLIAQISDLHIRMPGQKAYRVVETDRYLPPAVAALNRLEPAPDLV FT IVSGDLTDFGRPQEYAHLKQMLDALRVPYHVLPGNHDDRVQLAATFADHPYLREAGEFV FT QYTIEDQPLRFIVLDTVVPQQSHGALCERRLQWLAQRLAEQPGRPTVIVMHHPPFRTGI FT AHMDAIGLLAGAPELEALVARHSNVERIMCGHLHRTIFQRFGGTIASTCPSPAHQVALD FT LRPDGPSAFVMEPPGFHLHEWRDGALVTHHAYIESYPGPYPFHEGGELIDE" FT CDS complement(join(121045..121122,122175..123077)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0125" FT /product="probable ABC transporter, ATP-binding protein FT (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. The IS insertion occurred near the FT C-terminal end (following codon 301). As a consequence, the FT protein is lacking 26 aa at its C-terminal end. Whether the FT protein is still functional remains to be elucidated. FT Similar to Rhizobium loti ABC transporter, ATP-binding FT protein Mlr7387 TR:Q986F1 (EMBL:AP003011) (361 aa) fasta FT scores: E(): 2e-39, 49.822% id in 281 aa, and to FT Caulobacter crescentus spermidine/putrescine ABC FT transporter, ATP-binding protein cc3134 TR:Q9A3R8 FT (EMBL:AE005977) (381 aa) fasta scores: E(): 2.4e-39, FT 53.184% id in 267 aa" FT /db_xref="PSEUDO:CAE40504.1" FT CDS complement(121123..122073) FT /transl_table=11 FT /locus_tag="BP0124" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE40505.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 121123..121154 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(121123..122175) FT misc_feature complement(121159..121692) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(121750..121815) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(122144..122175) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT misc_feature complement(122433..122981) FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature complement(122619..122663) FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(122937..122960) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(123074..123922) FT /transl_table=11 FT /locus_tag="BP0126" FT /product="ABC transporter, permease protein" FT /note="Similar to Rhizobium loti ABC transporter, permease FT Mlr9016 TR:Q982L0 (EMBL:AP003015) (278 aa) fasta scores: FT E(): 9.8e-17, 31.395% id in 258 aa, and to Treponema FT pallidum spermidine/putrescine ABC transporter, permease FT protein Tp0654 TR:O83660 (EMBL:AE001240) (272 aa) fasta FT scores: E(): 5.7e-13, 28.077% id in 260 aa" FT /db_xref="GOA:Q7W0J2" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q7W0J2" FT /protein_id="CAE40506.1" FT /translation="MREAGMSAMYSKTDARLGLTVTLAVAAFLIGPVVLSVLAGLTRNY FT FVGLESGLTLRWVIEVWDLYADTIWRSFAVALLTLLVCTLTGVPAAWVLTLHHGRMARA FT LEELLTLPVAVPGLASALALIVSWGTVSGLRGSIWFIVIGHVLFTLPFMVRATRASMAG FT ADLATLDEAAATLGASRLRRFLTVVVPNAAPGIVTGALTVLTLSIGEFNLTWLLHTPLT FT KTLPVGLADSYASMRLEIASAYTLVFLLMLMPLLVGLQWLAARGERNAANAPITNEKTA FT T" FT misc_feature complement(join(123137..123202,123296..123361, FT 123461..123514,123530..123595,123635..123700, FT 123806..123871)) FT /note="6 probable transmembrane helices predicted for FT BP0126 by TMHMM2.0 at aa 17-39, 74-96, 109-131, 136-154, FT 187-209 and 240-262" FT misc_feature complement(123221..123445) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT CDS complement(join(123919..124107,124107..124742)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0127" FT /product="probable Binding-protein-dependent transport FT system, permease protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 212. The frameshift occurs within FT a homopolymeric tract of 4G. The sequenced has been checked FT and believed to be correct. Similar to Escherichia coli FT molybdenum transport system permease protein ModB or ChlJ FT or B0764 SW:MODB_ECOLI (P09834) (229 aa) fasta scores: E(): FT 6.4e-16, 34.583% id in 240 aa, and to Pyrococcus furiosus FT putative sulfate transport system permease protein FT TR:Q9HH30 (EMBL:AF307052) (322 aa) fasta scores: E(): FT 2e-14, 29.278% id in 263 aa" FT /db_xref="PSEUDO:CAE40507.1" FT misc_feature complement(join(124036..124107,124107..124253)) FT /note="HMMPfam hit to PF00528, Binding-protein-dependent FT transport systems inner membrane component" FT variation complement(124107..124110) FT /note="(G)4 in pertussis; (G)5 in parapertussis" FT CDS complement(124744..125754) FT /transl_table=11 FT /locus_tag="BP0128" FT /product="probable periplasmic solute-binding protein" FT /note="Similar to Campylobacter jejuni putative periplasmic FT solute-binding protein Cj0727 TR:Q9PPI0 (EMBL:AL139076) FT (348 aa) fasta scores: E(): 1.5e-26, 32.333% id in 300 aa, FT and to Rhizobium loti ABC transporter, periplasmic binding FT protein Mll3069 TR:Q98H18 (EMBL:AP003001) (368 aa) fasta FT scores: E(): 2.8e-24, 33.981% id in 309 aa" FT /db_xref="GOA:Q7W0J1" FT /db_xref="InterPro:IPR006059" FT /db_xref="UniProtKB/TrEMBL:Q7W0J1" FT /protein_id="CAE40508.1" FT /translation="MKRIIQAALRGTLLALAIGAGAAQAQNAICYNCPPEWADWATQLK FT AIKEATGITVPGDNKNSGQALASIAAEKANPVADVVYYGVTFGIQADKDGLVQSYKPAH FT WDAIPDGMKDPDGKWFAIHSGTLGFMVNVDALRGKPVPKSWADLQKPEYRGMVGYLDPA FT SAFVGYVGAVALNRALGGTLDNFDPAIDWFKKMRANRPIVPKQTAYARVLSGEIPILID FT YDFNAYRAKYKDEANVDFVIPAEGTIAVPYVMSLVANAPHADNGRKVLDFTLSERGQAI FT WANAFLRPVRAEAISAEAQKKFLPASEYARAGTVDYVKMSVAQRGFSERYAKEVN" FT misc_feature complement(125680..125754) FT /note="Signal peptide predicted for BP0128 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.996 between residues 25 and 26" FT CDS complement(join(125751..126170,126169..126723, FT 126722..126766)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0129" FT /product="probable LacI-family transcriptional regulator FT (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 198. The frameshift occurs within FT a polymeric tract of 4(GC). The sequenced has been checked FT and believed to be correct. Similar to Escherichia coli FT transcriptional repressor CytR or B3934 or Z5481 or ECS4861 FT SW:CYTR_ECOLI (P06964) (341 aa) fasta scores: E(): 2.8e-23, FT 30.861% id in 337 aa, and to Streptomyces coelicolor FT probable LacI-family transcriptional regulator Scc57a.16 FT TR:Q9RDI2 (EMBL:AL136519) (347 aa) fasta scores: E(): FT 2.1e-26, 32.523% id in 329 aa." FT /db_xref="PSEUDO:CAE40509.1" FT misc_feature complement(join(125877..126170,126169..126594)) FT /note="HMMPfam hit to PF00532, Periplasmic binding proteins FT and sugar binding domain of the LacI family." FT variation complement(126169..126176) FT /note="(GC)4 in pertussis; (GC)5 in parapertussis" FT CDS 127034..128287 FT /transl_table=11 FT /locus_tag="BP0130" FT /product="amidase" FT /note="Similar to Pseudomonas putida amidase SW:AMID_PSEPU FT (O69768) (466 aa) fasta scores: E(): 6.3e-24, 35.526% id in FT 380 aa, and to Bradyrhizobium japonicum malonamidase E2 FT TR:Q9ZIV5 (EMBL:AF012735) (432 aa) fasta scores: E(): FT 2.5e-34, 39.012% id in 405 aa. Also similar to BP3713 FT (45.679% identity in 405 aa overlap)" FT /db_xref="GOA:Q7W0J0" FT /db_xref="InterPro:IPR000120" FT /db_xref="UniProtKB/TrEMBL:Q7W0J0" FT /protein_id="CAE40510.1" FT /translation="MNLNRISASEAARLLNRRDLTAEQLARACLARIEQREPEVQAWTA FT LRPDAVLAAARELDRGPIRGVLHGLPLGVKDMFDTADLPTAYGSGIYQSHQPRADAAAV FT ALCRDAGALVLGKTATTEFATYHPGPTRNPRNTAYTPGGSSSGSAAAVADDMVPLALGT FT QTAGSVIRPAAYCGVVGYKPSFGRISRAGLKSLAETLDTVGMFARSVDDVALLASALMR FT DARLRELRYDGTPRVAMFRSPQWRHTLPETRPAFERAARALSQAGAVVEELAPPPNEDC FT GLAQLHSDVMAYEAAQALAFERIHYPSQLSTKLAAMLEAGAALTAEQYLAHLAQAGQAR FT AKVAEWLQRYDVLLAPSATGDPLFCRAWTLFGVPCVHLPFAQGPQGLPVGLQVVGGFRD FT DQRLLAIARWMNGVLAAD" FT misc_feature 127103..128107 FT /note="HMMPfam hit to PF01425, Amidase" FT misc_feature 127364..127387 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(128378..130078) FT /transl_table=11 FT /gene="leuA" FT /locus_tag="BP0131" FT /product="2-isopropylmalate synthase" FT /EC_number="2.3.3.13" FT /note="Similar to Rhizobium meliloti 2-isopropylmalate FT synthase LeuA SW:LEU1_RHIME (Q9X7L2) (569 aa) fasta scores: FT E(): 5e-105, 49.374% id in 559 aa, and to Pseudomonas FT aeruginosa 2-isopropylmalate synthase LeuA or PA3792 FT TR:Q9HXK5 (EMBL:AE004798) (592 aa) fasta scores: E(): FT 7.9e-135, 58.803% id in 568 aa. The N-terminal region of FT this CDS is similar to BP0287, 68.598% identity (68.598% FT ungapped) in 328 aa overlap" FT /db_xref="GOA:Q7W0I9" FT /db_xref="InterPro:IPR000891" FT /db_xref="UniProtKB/TrEMBL:Q7W0I9" FT /protein_id="CAE40511.1" FT /translation="MMLANPATKYVPFQPFARDFAERTWPSRRITQPPIWMSTDLRDGN FT QSLIEPMSVERKVRFFEQLVKIGFKEIEVGFPSASQTDFDFVRKLIDEKRIPDDVTIIV FT LTQSREDLISRTVEAAAGARQAMIHLYNACAPAFRKIVFNMSRDEIKNIAVTGTRMVKQ FT YMAKYPQTQWRYEYSPEVFSTTEPEFALDVSNAVADEWDATPQRKMVLNLPATIEATSP FT NMYADQIEWMHKNLARRDSIVLSVHPHNDRGTAVAAAEFAVMAGADRIEGCLFGSGERT FT GNVDLVTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQLPVHPRHPYAGDLVFTAFSGS FT HQDAIKKGFAQQQADAPWEVPYLPIDPADLGRSYDAVIRVNSQSGKGGVSYLLEQEHGL FT VLPRRLQIEFSRAIQRVTDETGREVSSDDVYTIFDSEYLAQQQPWQLVRHRIDGDPSAG FT EGKHFSIEAELSFNGERRIVKGSGDGAISAFVAALDVPVRIMDYHEHAIGTDTRAACYV FT EVRVGDSPTGFGVGIDRDIVTASFKAVLGAVNRHHVAATQATETEAVAA" FT misc_feature complement(128783..128833) FT /note="ScanRegExp hit to PS00283, Soybean trypsin inhibitor FT (Kunitz) protease inhibitors family signature." FT misc_feature complement(129089..129961) FT /note="HMMPfam hit to PF00682, HMGL-like" FT misc_feature complement(129308..129349) FT /note="ScanRegExp hit to PS00816, Alpha-isopropylmalate and FT homocitrate synthases signature 2." FT misc_feature complement(129908..129958) FT /note="ScanRegExp hit to PS00815, Alpha-isopropylmalate and FT homocitrate synthases signature 1. Confirmed by InterPro FT eMOTIF pattern match." FT CDS complement(130505..131152) FT /transl_table=11 FT /locus_tag="BP0132" FT /product="putative membrane protein" FT /note="no significant database matches" FT /db_xref="UniProtKB/TrEMBL:Q7W0I8" FT /protein_id="CAE40512.1" FT /translation="MMNPTSPERIRQDGRLIGQALLKLALPRLIFRVVVVAIAAVIWLL FT VAAWLLAFGKSLSFEGMHALGQQAVDMLTRVNPYFWWGVVAIWSLIVFFSIRAWLGSSI FT AAGRAAVVPTDVLSDLAPRLSPEVLDVLRWVWGEREEPLTVGDLQRAHTELRHNHIGKI FT ALVREQSGILDAPAHRPGPDERHCAARHAEPRITEPRAVEPRLAEPHIGPAR" FT misc_feature complement(join(130850..130915,131000..131065)) FT /note="2 probable transmembrane helices predicted for FT BP0132 by TMHMM2.0 at aa 29-51 and 79-101" FT CDS 131169..132590 FT /transl_table=11 FT /gene="rpoN" FT /gene_synonym="glnF" FT /gene_synonym="ntrA" FT /locus_tag="BP0133" FT /product="RNA polymerase sigma-54 factor" FT /note="Similar to Escherichia coli RNA polymerase sigma-54 FT factor RpoN or GlnF or NtrA or B3202 SW:RP54_ECOLI (P24255) FT (477 aa) fasta scores: E(): 2.1e-63, 42.946% id in 482 aa, FT and to Alcaligenes eutrophus RNA polymerase sigma-54 factor FT TR:Q9EX69 (EMBL:AJ131690) (492 aa) fasta scores: E(): FT 9.5e-66, 49.600% id in 500 aa" FT /db_xref="GOA:Q7W0I7" FT /db_xref="InterPro:IPR007634" FT /db_xref="UniProtKB/TrEMBL:Q7W0I7" FT /protein_id="CAE40513.1" FT /translation="MTRPALELRPGQHLTLTPQLQQSIRLLQLSSLELEAELSQALAEN FT PLLERDEDPAREEQADPEREASVEADEAPDTELRLDEMPGSGGVLPDDDSDLPQAARPD FT TLREHLLGQLALTRAAPRDAALCGLLIDELDENGYLDSPLEEILTWLPAEVQADLDELR FT AALALLQSFDPAGIGARDMAECLQLQLRQPDPARLPEAADAEVLACARRICAQHLPLLA FT TGNVARVREAVQCDEAVVRAAHALIPRLEPRPGRAWTVPAADYAIPDVIVRRTRQGWQA FT VLNSAVVPRLHVNAVYAQVLGGQRQGGNAGLQAQLQQARWMIRNVEQRFDTILRVAQAI FT VAHQQAFFTQGPAAMRPLILKDIAGELDLHESTISRATTQKYMLTPFGTLELKRFFGAG FT VSTDGGDATSATAVQAVIRQMVADEDRAKPLSDSQIMQRLADQGIVIARRTVAKYREAL FT RIAPATLRKAHAAGR" FT misc_feature 131169..132572 FT /note="HMMPfam hit to PF00309, Sigma-54 factors family" FT misc_feature 132237..132296 FT /note="ScanRegExp hit to PS00717, Sigma-54 factors family FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 132240..132305 FT /note="Predicted helix-turn-helix motif with score 1473 FT (+4.20 SD) at aa 358-379, sequence LILKDIAGELDLHESTISRATT" FT misc_feature 132510..132533 FT /note="ScanRegExp hit to PS00718, Sigma-54 factors family FT signature 2. Confirmed by InterPro eMOTIF pattern match." FT CDS 132683..132985 FT /transl_table=11 FT /locus_tag="BP0134" FT /product="putative bacterioferritin-associated ferredoxin" FT /note="Similar to Azotobacter vinelandii FT bacterioferritin-associated ferredoxin Bfd TR:Q9Z5W9 FT (EMBL:AF121138) (73 aa) fasta scores: E(): 0.004, 40.426% FT id in 47 aa, and to Neisseria meningitidis putative FT ferredoxin Nma0965 or Nmb0752 TR:Q9JQR7 (EMBL:AL162754) (66 FT aa) fasta scores: E(): 4.5e-08, 53.704% id in 54 aa" FT /db_xref="InterPro:IPR007419" FT /db_xref="UniProtKB/TrEMBL:Q7W0I6" FT /protein_id="CAE40514.1" FT /translation="MPIIVLMYICICNAVTERQVRACVDAGAATLGDLQFELGVATCCG FT CCAATATEYLPGGRASSVCEVRSVAVPVNPPAALEPVGTPQPAANGFPIPLVAVA" FT CDS complement(133013..133933) FT /transl_table=11 FT /locus_tag="BP0135" FT /product="probable LysR-family transcriptional regulator" FT /note="Similar to Escherichia coli probable transcriptional FT regulator LrhA or GenR or B2289 SW:LRHA_ECOLI (P36771) (312 FT aa) fasta scores: E(): 5.4e-21, 33.212% id in 274 aa, and FT to Rhizobium meliloti putative LysR-family transcriptional FT regulator Sma1979 TR:AAK65745 (EMBL:AE007294) (290 aa) FT fasta scores: E(): 6.7e-40, 49.810% id in 263 aa" FT /db_xref="GOA:Q7W0I5" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W0I5" FT /protein_id="CAE40515.1" FT /translation="MTNSLFGSKVFEKPMHFPERTAVDLDLLHSFVSVVDAGGFTRAGE FT RVHRTQSTVSQQIRKLEDALGCALFIREGRGVRLTEDGERLLGYARRMLALSNEIREVV FT SGERRLEVVRLGLPDDLAVTRLTHMVADFARRHPQVRLSMRCDLSANLHRAQARGELDL FT VLLKREPGAGPSRAAWPERLHWLCAAGGPATLPDPIALVAFPQGCQYRNRAIHALESAG FT RRWRIAYESPNLSGLQAAVEGGLGVALLEQRCQTPAMARCDALLPRPAPSELALCMSDT FT GSRAVHELARLIMDFCGDDKLRQAA" FT misc_feature complement(133241..133294) FT /note="ScanRegExp hit to PS00216, Sugar transport proteins FT signature 1." FT misc_feature complement(133439..133861) FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature complement(133727..133819) FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT misc_feature complement(133757..133822) FT /note="Predicted helix-turn-helix motif with score 1647 FT (+4.80 SD) at aa 38-59, sequence GGFTRAGERVHRTQSTVSQQIR" FT CDS join(134083..134547,134547..134927) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0136" FT /product="putative integral membrane protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 155. The sequenced has been FT checked and believed to be correct. Similar to Pseudomonas FT aeruginosa hypothetical protein Pa3358 TR:Q9HYN8 FT (EMBL:AE004758) (292 aa) fasta scores: E(): 1e-19, 34.164% FT id in 281 aa, and to Agrobacterium tumefaciens Agr_c_4246p FT TR:AAK88080 (EMBL:AE008149) (354 aa) fasta scores: E(): FT 8.2e-19, 29.965% id in 287 aa" FT /db_xref="PSEUDO:CAE40516.1" FT misc_feature 134092..134466 FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6" FT misc_feature join(134527..134547,134547..134906) FT /note="HMMPfam hit to PF00892, Integral membrane protein FT DUF6" FT variation 134547..134548 FT /note="GT in pertussis; G(C)T in parapertussis" FT CDS complement(135158..136108) FT /transl_table=11 FT /locus_tag="BP0137" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE40517.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 135158..135189 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(135158..136210) FT misc_feature complement(135194..135727) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(135785..135850) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT CDS 136210..136479 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0138" FT /product="C-terminal region of an outer membrane porin FT (Pseudogene)" FT /note="Pseudogene. This CDS is the C-terminal region of FT BP0267 which was disrupted by the insertion of IS481 FT element. Similar to C-terminal region of the previously FT sequenced Bordetella pertussis outer membrane porin protein FT precursor SW:OMP_BORPE (Q04064) (385 aa) fasta scores: E(): FT 2e-21, 66.667% id in 90 aa, and to Bordetella pertussis FT OmpQ TR:Q45342 (EMBL:U16266) (364 aa) fasta scores: E(): FT 0.014, 32.292% id in 96 aa. Also similar to N-terminus of FT BP2851 (65.909% identity in 88 aa overlap), and BP0840 FT (66.667% identity in 90 aa overlap)." FT misc_feature 136348..136476 FT /note="HMMPfam hit to PF00267, Gram-negative porin" FT CDS complement(136527..138035) FT /transl_table=11 FT /gene="ilvA" FT /locus_tag="BP0139" FT /product="threonine dehydratase biosynthetic" FT /EC_number="4.3.1.19" FT /note="Similar to Escherichia coli threonine dehydratase FT biosynthetic IlvA or B3772 SW:THD1_ECOLI (P04968) (514 aa) FT fasta scores: E(): 8.9e-98, 52.200% id in 500 aa, and to FT Burkholderia cepacia threonine dehydratase biosynthetic FT IlvA SW:THD1_BURCE (P53607) (507 aa) fasta scores: E(): FT 6.2e-134, 69.444% id in 504 aa" FT /db_xref="GOA:Q7W0I4" FT /db_xref="InterPro:IPR000634" FT /db_xref="UniProtKB/TrEMBL:Q7W0I4" FT /protein_id="CAE40519.1" FT /translation="MSTDYLKRILTSKVYDVAVESPLERAPLLSQRIANNVLLKREDTQ FT AVFSFKLRGAYNKMANLTPAARSRGVIAASAGNHAQGVALAATRLGCRAVIVMPTTSPQ FT VKVDAVRRLGGEVVLAGDSFTDAYEHAQQLEKREKLTFVHPFDDPDVIAGQGTIGMEIL FT RQHPGEIEAIFVAIGGGGLIAGVAAYIKQLRPEIKIIGVQTEDSDAMVRSVRAGRRVQL FT SDVGLFSDGTAVKLVGAETFRLARQYVDDFVVVNTDAICAAIKDVFQDTRSVLEPAGAM FT AVAGAKQYAAEHKLKGKTLVAVACGANMNFDRLRFVAERAEVGEMREAVFAVTMPEQRG FT SFRRFCELVGNRSVTEFNYRISDAERAHVFVGVQVSTPAEPEKIAANFRRHGFDTLDLT FT HDELAKTHLRHMVGGHSALARNELLYRFEFPERPGALMRFLNAMNPDWNISLFHYRNQG FT ADYGNILIGIQVPPTDKKLFKTFVAELGYPHWNETDNPAYRLFL" FT misc_feature complement(136530..136799) FT /note="HMMPfam hit to PF00585, C-terminal domain of FT Threonine dehydratase" FT misc_feature complement(136812..137081) FT /note="HMMPfam hit to PF00585, C-terminal domain of FT Threonine dehydratase" FT misc_feature complement(137115..137996) FT /note="HMMPfam hit to PF00291, Pyridoxal-phosphate FT dependent enzyme" FT misc_feature complement(137361..137408) FT /note="ScanRegExp hit to PS00063, Aldo/keto reductase FT family putative active site signature." FT misc_feature complement(137871..137912) FT /note="ScanRegExp hit to PS00165, Serine/threonine FT dehydratases pyridoxal-phosphate attachment site. Confirmed FT by InterPro eMOTIF pattern match." FT CDS join(138122..138409,138413..138658) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0140" FT /product="conserved hypothetical protein (pseudogene)" FT /note="Pseudogene. This CDS appears to have an in-frame TAG FT stop codon. The sequence has been checked and believed to FT be correct. Similar to Escherichia coli hypothetical 15.6 FT kDa protein in gshA-csrA intergenic region YqaA or B2689 FT SW:YQAA_ECOLI (P76631) (142 aa) fasta scores: E(): 3.5e-09, FT 35.256% id in 156 aa, and to Vibrio cholerae hypothetical FT protein Vc0553 TR:Q9KUG8 (EMBL:AE004141) (153 aa) fasta FT scores: E(): 9.2e-09, 44.578% id in 166 aa" FT /db_xref="PSEUDO:CAE40520.1" FT variation 138410..138412 FT /note="TAG stop in pertussis; CAG in parapertussis" FT CDS 138845..142744 FT /transl_table=11 FT /locus_tag="BP0141" FT /product="probable iron-sulfur binding oxidase" FT /note="Similar to Neisseria meningitidis oxidoreductase, FT putative nmb0998 TR:Q9JZL6 (EMBL:AE002451) (1277 aa) fasta FT scores: E(): 3e-169, 61.515% id in 1307 aa" FT /db_xref="GOA:Q7W0I3" FT /db_xref="InterPro:IPR006094" FT /db_xref="UniProtKB/TrEMBL:Q7W0I3" FT /protein_id="CAE40521.1" FT /translation="MREIPYNYTSFSDREIVSRLLGEDAWQLVSDLRGERRTGRSARML FT YEVLGDIWVVRRNPYLQDDLLDNPKRRKLLIEALHHRLGEIDKRREPAAVTEAGHDPRR FT DAKVVELLARARSAVAAFEGQFDQTAQLRRQAQRVLGRITARDNIKFDGLSRVSHVTDA FT TDWRVEYPFVVLTPDAEDEIAALVRACIELGLTIVPRGGGTGYTGGAIPLTWKSAVINT FT EKFEALGEVESCVLPGMTEPAAVIRAGAGVVTKRVAEAAERAGFVFAVDPTSAEASCVG FT GNIAMNAGGKKAVLWGTALDNLAWWRMVDPDGNWLEVTRLAHNLGKIHDVDVASFELKW FT FDGAGKPGEKLLRTERLDIEGRKFRKAGLGKDVTDKFLAGLPGVQKEGCDGLITSARWV FT LHRMPRHTRTVCMEFFGQARDAIPSIVEVKGYLDGEGKARGAILAGLEHLDERYLRAVG FT YATKSKRGMLPKMVLIGDIVGDDEDAVATAASEVVRLANTRHGEGFVAVSAEARKKFWL FT DRSRTAAIARHTNAFKINEDVVIPLDRMGEYTDHIERINIELSTRNKLRLLDELDAYLA FT EPLPMGKVEDAEDVALTRAEVLAERTRQAIEHLARTRRRWQWLLDNLDLPLAQALPELD FT GLDMAAQREALAERVQAQPQARVFDVVQDHTVRISWKTEVLPALQGVFSGNAGKLILEG FT LVAVHARVLKSRVFVALHMHAGDGNVHTNIPVNSDDYGMLREANQAVERIMQIARDLDG FT VISGEHGIGLTKYEFLTEAELAPFQEYKRRVDPNGHFNAGKLMPGADLRHAWTPSFNLM FT GHESLIMQQSDIGAIADSVKDCLRCGKCKPVCSTHVPRANLLYSPRNKILATSLLVEAF FT LYEEQTRRGISLKHWEEFEDVADHCTVCHKCYTPCPVDIDFGDVSMNMRALLRRMGRKS FT FNPGTAAAMFFLNAKDPAAINATRKAMVGVGYKVQRAAHDLLASVSRKQAAHPPATVGR FT APLREQVVHFVNRKMPGGLPKQTARKLLDIEDANYVPIIRDPKTTTADTEAVFYFPGCG FT SERLFSQVGLATQAMLWHAGVQTVLPPGYLCCGYPQRGNGMTDKAEQIITDNRVLFHRV FT SNTLNYLDIKTVVVSCGTCYDQLAGYEFEKIFPGCRLIDIHEYLLEKGIKLDGVQGVRY FT MYHDPCHTPMKLQDPMKTVRSLVGEGAQKSDRCCGESGTLAVSRPDVSTQVRFRKQEEL FT DQGQAAMRADGFSGDVKVLTSCPSCLQGLSRYEGETGMDADYIVVEMARHILGETWMED FT YVRRANTGGIEHVLV" FT misc_feature 138845..138856 FT /note="ScanRegExp hit to PS00228, Tubulin-beta mRNA FT autoregulation signal." FT misc_feature 139256..140029 FT /note="HMMPfam hit to PF01565, FAD binding domain" FT misc_feature 141323..141394 FT /note="HMMPfam hit to PF00037, 4Fe-4S binding domain" FT misc_feature 141530..141547 FT /note="ScanRegExp hit to PS00190, Cytochrome c family FT heme-binding site signature." FT misc_feature 141530..141565 FT /note="ScanRegExp hit to PS00198, 4Fe-4S ferredoxins, FT iron-sulfur binding region signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 142797..143579 FT /transl_table=11 FT /locus_tag="BP0142" FT /product="GntR family transcriptional regulator" FT /note="Similar to Deinococcus radiodurans transcriptional FT regulator, GntR family Dr0815 TR:Q9RW54 (EMBL:AE001936) FT (267 aa) fasta scores: E(): 1.7e-09, 30.041% id in 243 aa, FT and to Bacillus subtilis hypothetical transcriptional FT regulator YdhC SW:YDHC_BACSU (O05494) (224 aa) fasta FT scores: E(): 3e-10, 29.469% id in 207 aa" FT /db_xref="GOA:Q7W0I2" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W0I2" FT /protein_id="CAE40522.1" FT /translation="MRYLCFNVYLVLSYICKLRRPAAKEFILDVKAPATIPYFLKEQIR FT ELIVDGTFRPGQPLREQDLEQRFGTSRSPIREALRLLERGGLVVHLQRKGFRIRRYSQT FT EIRQVYMLYAELEAYSIMQLSEAADSPLLDDLRRHEARIAQAQADADVRGYIGALRDFY FT LASARFTGNVPLADTLSRLYEQVEPLRYNLVRRTLAATPADQYHRGIVPALAQRDLAGA FT ARQAHVLVREMLPRILSAYEQWAGDAGDEPGDDRLRVA" FT misc_feature 142914..143090 FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT misc_feature 142968..143042 FT /note="ScanRegExp hit to PS00043, Bacterial regulatory FT proteins, gntR family signature." FT misc_feature 142971..143036 FT /note="Predicted helix-turn-helix motif with score 1190 FT (+3.24 SD) at aa 59-80, sequence LREQDLEQRFGTSRSPIREALR" FT CDS complement(143667..144890) FT /transl_table=11 FT /locus_tag="BP0143" FT /product="conserved hypothetical protein" FT /note="Identical to the N-terminal region of Bordetella FT pertussis hypothetical 29.3 kDa protein TR:O30450 FT (EMBL:AF006000) (273 aa) fasta scores: E(): 9.8e-105, FT 100.000% id in 273 aa, and similar to Pseudomonas FT aeruginosa hypothetical protein PA0446 TR:Q9I672 FT (EMBL:AE004482) (407 aa) fasta scores: E(): 2.7e-92, FT 57.248% id in 407 aa. Also similar to BP1779 (68.059% FT identity in 407 aa overlap), and BP3309 (57.143% identity FT in 399 aa overlap)." FT /db_xref="GOA:Q7W0I1" FT /db_xref="HSSP:1PQY" FT /db_xref="InterPro:IPR003673" FT /db_xref="UniProtKB/TrEMBL:Q7W0I1" FT /protein_id="CAE40523.1" FT /translation="MKQALEHIKVVDLTRVLAGPWATQILADMGARVIKIERPGAGDDL FT RGWGPPFLKNAHGEETTDAAYFLSTNRGKESVTLDISSAEGQEIVRQLAKDADVLVENY FT KVGTLARFGLDYESLRKINPRLVYCSVTGFGQTGPHAHLPGYDYIFQGMGGLMSITGLP FT DAEPGGGPLKTGIPITDVVTGIYASTAILGALEHRNLSGEGQAIDISLLDCLVNVTGCA FT VMNYFLSGRIPQRLGNTHSNMVPYQVFRCKEGDVIVAVGNDTQFVTFAGLIGMPQLATD FT SRFSTMAQRSRNRETLIPIIAQAMQARTMQEWVSLLEAANVPCGPINNLQQVFEDPQVQ FT HRGLKLSLPHGSGVDAPGVASPIRYSATPIAYGRAAPCLGEHTDDVLQSELGMAPAAIG FT ALRARGIV" FT misc_feature complement(144081..144662) FT /note="HMMPfam hit to PF02515, CAIB/BAIF family" FT CDS complement(144874..145806) FT /transl_table=11 FT /locus_tag="BP0144" FT /product="putative lipase" FT /note="This CDS start with an isoleucine, whereas FT parapertussis and bronchiseptica start with a methionine. FT The sequence has been checked and believed to be correct. FT Identical to the previously sequenced Bordetella pertussis FT hypothetical 34.3 kDa protein TR:O30449 (EMBL:AF006000) FT (324 aa) fasta scores: E(): 2.8e-116, 100.000% id in 303 FT aa, and to Acinetobacter spSE19. acetyl-hydrolase chnC FT TR:Q9F7D7 (EMBL:AF282240) (300 aa) fasta scores: E(): FT 1.8e-28, 34.507% id in 284 aa. Also similar to BP2097, FT 39.583% identity in 288 aa overlap" FT /db_xref="GOA:Q7W0I0" FT /db_xref="InterPro:IPR013094" FT /db_xref="UniProtKB/TrEMBL:Q7W0I0" FT /protein_id="CAE40524.1" FT /translation="MASAQLATLSAQVRQLYAGWDPNTDIARIRRDWDAFFGAVRLPAR FT VTPVDAGGVPCHWIEAPASTRDRVVVFIHGGGYQIGSHRSHHNLMARLSAWSGRAVLSI FT GYRLAPQARCPAALEDVDAAHAWLAGQGWSARQTALCGDSAGGALAVLLLARLRARGAA FT LPAACAVMSPWIDLQARGESYTANAASDPIANRATVLRMARAYLGRDGDPEAPAVSAQH FT ADLRGLPPLLVQAGSAEALLDDARALAARAAASGVAVRLSVWQDMPHVFQLFAARLDAA FT DAAIAELADFINHPLRAPTGAEPRHETST" FT misc_feature complement(145549..145599) FT /note="ScanRegExp hit to PS01173, Lipolytic enzymes FT 'G-D-X-G' family, putative histidine active site. Confirmed FT by InterPro eMOTIF pattern match." FT variation complement(145804..145806) FT /note="AT(A) (isoleucine) in pertussis; AT(G) (a methionine FT start codon)in parapertussis and bronchiseptica" FT CDS complement(145812..146624) FT /transl_table=11 FT /locus_tag="BP0145" FT /product="putative enoyl-CoA hydratase/isomerase" FT /note="Identical to the previously sequenced Bordetella FT pertussis hypothetical 29.5 kDa protein TR:O30448 FT (EMBL:AF006000) (270 aa) fasta scores: E(): 3e-109, FT 100.000% id in 270 aa, and similar to Escherichia coli FT naphthoate synthase MenB or B2262 SW:MENB_ECOLI (P27290) FT (285 aa) fasta scores: E(): 3.5e-20, 33.969% id in 262 aa" FT /db_xref="GOA:O30448" FT /db_xref="HSSP:1MJ3" FT /db_xref="InterPro:IPR001753" FT /db_xref="UniProtKB/TrEMBL:O30448" FT /protein_id="CAE40525.1" FT /translation="MNKSDSFELIEYQAADGIARIAHNRPQARNAESQGLLEELDQALG FT LAVRDASVKAIVISGKGDHFSAGHDLKEAAAKRSNFTVEQRWEFEQRYYLGYAMHIYDC FT PKPTIAQVSGACIAGGFMVANMCDLIVASDDAFFSDPVCQTLATAAVEVMIHPWVMGAR FT KAKEFLFLGERMSAREALAIGMVNKVVARAELQAETERMAQRIAACDPFALRLVKRSIN FT RGLEMQGLRSAIDAHFDTHQLSHLSEGFNRARAQGLGNAIQAAAAGSR" FT misc_feature complement(146052..146570) FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT CDS complement(join(146645..147106,147110..147865)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0146" FT /product="putative hydroxylase (Pseudogene)" FT /note="Pseudogene. This CDS appears to have an in-frame FT stop codon. The sequence has been checked and believed to FT be correct. Identical to the previously sequenced FT Bordetella pertussis hypothetical 45.1 kDa protein FT TR:O30447 (EMBL:AF006000) (406 aa) fasta scores: E(): FT 1.4e-164, 99.754% id in 406 aa, and similar to Streptomyces FT coelicolor putative salicylate hydroxylase Sce29.14C FT TR:Q9Z4Y6 (EMBL:AL035707) (420 aa) fasta scores: E(): FT 2.6e-41, 39.692% id in 325 aa" FT /db_xref="PSEUDO:CAE40526.1" FT variation complement(147107..147109) FT /note="In-frame TAG stop codon in pertussis; CAG in FT parapertussis and bronchiseptica" FT misc_feature complement(147812..147865) FT /note="Signal peptide predicted for BP0147 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.926) with cleavage site FT probability 0.464 between residues 18 and 19" FT CDS complement(147937..148908) FT /transl_table=11 FT /locus_tag="BP0148" FT /product="putative exported protein" FT /note="Identical to the previously sequenced Bordetella FT pertussis hypothetical 34.9 kDa protein in brg1 3'region FT precursor SW:YBR5_BORPE (O30446) (323 aa) fasta scores: FT E(): 6.7e-122, 100.000% id in 323 aa, and similar to FT Comamonas testosteroni OrfJ protein TR:Q9RHM9 FT (EMBL:AB029044) (326 aa) fasta scores: E(): 8.9e-35, FT 35.220% id in 318 aa" FT /db_xref="GOA:O30446" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/Swiss-Prot:O30446" FT /protein_id="CAE40527.1" FT /translation="MKPFSLLRRIATIALLMAASSAHADTFPSRPIRLIVPFGPGGITD FT LIARQAALGMAEKLGQPVIIENKPSAGHIVAMQTVAQATPDGYTILLGSNTGFTVAPHM FT YKNLPFRIDTLQPIAPINTAPTVLLARPDFPANNLTELIQYIKDNPGKLNYGSFGIGTS FT AHLGMEIMKSDLGLNIMHIPYRGDAQGLLALKAKEVDIAYITLFSAQARIRAGEFKALG FT VLQNDRLTAFPDIQTTVEVGSKNSGMPVWIAFFAPPGTPDAVMRKLESATRSASTAPAF FT VEFLHNNGVEPWNPSNQDLMRFIQDQLNRSGPIIQEIGLQPQ" FT misc_feature complement(148837..148908) FT /note="Signal peptide predicted for BP0148 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 1.000 between residues 24 and 25" FT CDS 149027..149809 FT /transl_table=11 FT /locus_tag="BP0149" FT /product="probable transcriptional regulator" FT /note="Identical to the previously sequenced Bordetella FT pertussis hypothetical 29.0 kDa protein TR:O30445 FT (EMBL:AF006000) (260 aa) fasta scores: E(): 2.1e-107, FT 100.000% id in 260 aa, and similar to Pseudomonas FT aeruginosa probable transcriptional regulator pa1630 FT TR:Q9I392 (EMBL:AE004590) (288 aa) fasta scores: E(): FT 3e-31, 40.329% id in 243 aa" FT /db_xref="GOA:O30445" FT /db_xref="InterPro:IPR014757" FT /db_xref="UniProtKB/TrEMBL:O30445" FT /protein_id="CAE40528.1" FT /translation="MSAPKASRPARDRQFASTLAHGLQLLRCFTPEAAVLSNRQLSELS FT GLSKPTVSRYTYTLIELGYLKVDPVSGKFQLGNAVLTLSYPLLANIALRQVVRSPMREL FT AERLGCSVSLCMRERLSMVYVETSRSRSLRAQRYSDIGMSHPIIATSNGRAYLAACSAD FT ERNTLFNQIRVKTPEHWERWGESALDMIQFWGRHGFCYSHGEYRPDVATVGVPYRPSSG FT GELYVFNCVLGSQFVKPGQLENEVGPALLEMTSVLPYA" FT misc_feature 149132..149197 FT /note="Predicted helix-turn-helix motif with score 1696 FT (+4.96 SD) at aa 36-57, sequence LSNRQLSELSGLSKPTVSRYTY" FT misc_feature 149246..149806 FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator" FT CDS complement(join(149820..149906,149908..150579)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0150" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 224. The frameshift occurs within FT a homopolymeric tract of (C)3. The sequence has been FT checked and believed to be correct. Identical to the FT previously sequenced Bordetella pertussis hypothetical 26.3 FT kDa protein TR:O30444 (EMBL:AF006000) (252 aa) fasta FT scores: E(): 4.5e-92, 100.000% id in 252 aa, and similar to FT Staphylococcus aureus subspaureus Mu50. conserved FT hypothetical protein Sav1605 TR:BAB57767 (EMBL:AP003362) FT (250 aa) fasta scores: E(): 8.6e-46, 52.227% id in 247 aa" FT /db_xref="PSEUDO:CAE40529.1" FT variation complement(149906..149908) FT /note="(C)3 in pertussis; (C)2 in parapertussis" FT CDS complement(150576..151556) FT /transl_table=11 FT /locus_tag="BP0151" FT /product="conserved hypothetical protein" FT /note="Identical to the previously sequenced Bordetella FT pertussis hypothetical 59.5 kDa protein TR:O30443 FT (EMBL:AF006000) (568 aa) fasta scores: E(): 2.8e-122, FT 100.000% id in 326 aa, and similar to Bacillus halodurans FT Bh1818 protein TR:Q9KBV6 (EMBL:AP001513) (331 aa) fasta FT scores: E(): 2.6e-41, 43.344% id in 323 aa" FT /db_xref="InterPro:IPR003778" FT /db_xref="UniProtKB/TrEMBL:Q7W0H9" FT /protein_id="CAE40530.1" FT /translation="MSLAVIKPGMLSTFQDGGRHGYQHQGIPVAGAMDPRAHRLANLLA FT GNAADTATLEITVAGPTLRFEAPACVALGGADLGATLGGLPAPVLRPLVARAGDVLSFA FT RPGQGARAYLAVHGGYDLPMVMGNQSTYLRSAFGGYHGRALAKGDQVGLRRPLADDAAR FT LDALAQQLWQLRFYLAATLSSPPRDVLRILPGPHWAAFDAASRQALLDQAFRIGAQSDR FT MGYRLEGPRLRLSEPREMLSEATCFGTVQVPADGAPIVLMADRQTTGGYPKLAQAMPGQ FT ALRFALIELAQAQRLDAAREAAFAQLTGQLDALRGLLRDFQEPTP" FT misc_feature complement(150648..151487) FT /note="HMMPfam hit to PF02626, Uncharacterized ACR, FT COG1984" FT CDS complement(151553..152281) FT /transl_table=11 FT /locus_tag="BP0152" FT /product="conserved hypothetical protein" FT /note="Identical to the previously sequenced Bordetella FT pertussis hypothetical 59.5 kDa protein TR:O30443 FT (EMBL:AF006000) (568 aa) fasta scores: E(): 3.9e-82, FT 99.103% id in 223 aa, and similar to Bacillus halodurans FT Bh1817 protein TR:Q9KBV7 (EMBL:AP001513) (225 aa) fasta FT scores: E(): 2.6e-26, 44.144% id in 222 aa" FT /db_xref="InterPro:IPR003833" FT /db_xref="UniProtKB/TrEMBL:Q7W0H8" FT /protein_id="CAE40531.1" FT /translation="MTASPSPPSSAPAGWRILPQGDRCLIVWFGAQIDAGVGRACLAAA FT GLLRAAGLAGVTDVVPSFAAVAVHYRPGPDGAPDYATLAAQVERLLAGGIPVDDSAGRE FT MEIPVCYGGEHGPDLEEAARAAGLTPEALVALHGAPGSMVYMLGFAPGHSYIGVHDARL FT DLPRRATPRTAVPAGSVAIANRQTVIYPARLPGGWNIIGATPLNLFDPGREPAALLQPG FT DRIRFVPIDAAEFDRLREAQ" FT misc_feature complement(151625..152239) FT /note="HMMPfam hit to PF02682, Uncharacterized ACR, FT COG2049" FT CDS complement(152306..152737) FT /transl_table=11 FT /locus_tag="BP0153" FT /product="probable dioxygenase" FT /note="Identical to the previously sequenced Bordetella FT pertussis hypothetical 15.6 kDa protein TR:O30442 FT (EMBL:AF006000) (143 aa) fasta scores: E(): 6.4e-60, FT 100.000% id in 143 aa, and similar to Pseudomonas FT aeruginosa probable ring-cleaving dioxygenase Pa0817 FT TR:Q9I5C2 (EMBL:AE004517) (141 aa) fasta scores: E(): FT 6.1e-33, 60.584% id in 137 aa" FT /db_xref="GOA:O30442" FT /db_xref="InterPro:IPR004360" FT /db_xref="UniProtKB/TrEMBL:O30442" FT /protein_id="CAE40532.1" FT /translation="MSTPSPIPPFHLAFPVRDLAEARDFYGALLGCPEGRSSPEWIDFN FT FYGHQIVAHLAPQACGSAATNAVDAHNVPVRHFGAVLSMDQWEALAGKLTDAGTEFVIE FT PYIRFKGEVGEQATMFFLDPSGNALEFKAFKNIESLFAK" FT misc_feature complement(152336..152695) FT /note="HMMPfam hit to PF00903, Glyoxalase/Bleomycin FT resistance protein/Dioxygenase superfamily" FT CDS 152839..153714 FT /transl_table=11 FT /gene="brg1" FT /locus_tag="BP0154" FT /product="LysR family transcriptional regulator" FT /note="Identical to the previously sequenced Bordetella FT pertussis Brg1 TR:O30441 (EMBL:AF006000) (291 aa) fasta FT scores: E(): 6.6e-108, 99.656% id in 291 aa, and similar to FT Pseudomonas aeruginosa probable transcriptional regulator FT pa0816 TR:Q9I5C3 (EMBL:AE004516) (294 aa) fasta scores: FT E(): 1.9e-38, 46.259% id in 294 aa" FT /db_xref="GOA:O30441" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:O30441" FT /protein_id="CAE40533.1" FT /translation="MIREFKTFIAVARGGTFTGAGRRLGLTQSAVSAQIKRLEEHLGVA FT LFERTGKSAALNHHGRSLLPQAEVLVAMADRVVGMAGAGRISGLLRVGAIASVQQDLLV FT RALAALRAEHPDVRVRIVPGVSLTLLGHVDAGEVDLAVLIRPPFALPPELEWQPLLHEP FT MVLAVPEAAPEGPWRELLAGQPFIRYDRASFGGRLVDMFLKRHRLDVREAIELDEIDAI FT ANLVRHGLGVALLPHTRHLDARGLRLLELDDQVRFAREIGLIVRQPLGQSPLAQRLAQC FT LRAAVSFGEA" FT misc_feature 152842..153264 FT /note="HMMPfam hit to PF00126, Bacterial regulatory FT helix-turn-helix protein, lysR family" FT misc_feature 152881..152946 FT /note="Predicted helix-turn-helix motif with score 1732 FT (+5.09 SD) at aa 15-36, sequence GTFTGAGRRLGLTQSAVSAQIK" FT misc_feature 152884..152976 FT /note="ScanRegExp hit to PS00044, Bacterial regulatory FT proteins, lysR family signature." FT CDS complement(153767..154987) FT /transl_table=11 FT /gene="serA" FT /locus_tag="BP0155" FT /product="D-3-phosphoglycerate dehydrogenase" FT /EC_number="1.1.1.95" FT /note="Identical to the previously sequenced Bordetella FT pertussis D-3-phosphoglycerate dehydrogenase homolog SerA FT TR:O30440 (EMBL:AF006000) (399 aa) fasta scores: E(): FT 4.9e-146, 99.749% id in 399 aa, and similar to Escherichia FT coli D-3-phosphoglycerate dehydrogenase SerA or B2913 FT SW:SERA_ECOLI (P08328) (409 aa) fasta scores: E(): 1.6e-81, FT 56.500% id in 400 aa" FT /db_xref="GOA:Q7W0H7" FT /db_xref="HSSP:1HKU" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7W0H7" FT /protein_id="CAE40534.1" FT /translation="MLYRQPNMAQIVLFENIHPSARAVFSAAGYTDIVAHAAALPSGEL FT REALRGAEVVGIRSRTHLDADLLAANPDLRVVGCFCIGTNQVDLDAAMMRGVPVFNAPF FT SNTRSVAELVLGEAILLLRRIPEKNARVHLGHWDKSAAGAYEARGKTLGIVGYGNIGSQ FT ISTLAEAIGMRVVFFDVEAKLPLGNARAAGSLAELLEQADVVTLHVPGGKSTQNIVNAD FT TLARMKRGAILINASRGTVVDIQALHDALASGHLAGAALDVFPTEPKSADEPLASPLIG FT MPNVVLTPHIGGSTQESQENIGREVAEKLVRFLQAGTTKSAVNFPELSYQAPVGGSRII FT HVHRNAPGALGALDNLMAQHGLNIVSQSLQTKGQIGYAVTDVDGEVSDTVLADLRSHPV FT TVRCEKL" FT misc_feature complement(153770..153979) FT /note="HMMPfam hit to PF01842, ACT domain" FT misc_feature complement(154118..154741) FT /note="HMMPfam hit to PF00389, D-isomer specific FT 2-hydroxyacid dehydrogenase, catalytic domain" FT misc_feature complement(154259..154309) FT /note="ScanRegExp hit to PS00671, D-isomer specific FT 2-hydroxyacid dehydrogenases signature 3. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature complement(154328..154396) FT /note="ScanRegExp hit to PS00670, D-isomer specific FT 2-hydroxyacid dehydrogenases signature 2. Confirmed by FT InterPro eMOTIF pattern match." FT misc_feature complement(154451..154534) FT /note="ScanRegExp hit to PS00065, D-isomer specific FT 2-hydroxyacid dehydrogenases NAD-binding signature. FT Confirmed by InterPro eMOTIF pattern match." FT misc_feature complement(154535..154558) FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT CDS complement(155071..155532) FT /transl_table=11 FT /locus_tag="BP0156" FT /product="putative exported protein" FT /note="Similar to Pasteurella multocida hypothetical FT protein Pm1939 TR:Q9CJQ5 (EMBL:AE006230) (151 aa) fasta FT scores: E(): 1.5e-25, 51.370% id in 146 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa4714 FT TR:Q9HV84 (EMBL:AE004885) (149 aa) fasta scores: E(): FT 8.1e-21, 46.853% id in 143 aa" FT /db_xref="InterPro:IPR007332" FT /db_xref="UniProtKB/TrEMBL:Q7W0H6" FT /protein_id="CAE40535.1" FT /translation="MSHVSTLRRALLGALLLAPAAALANTPIPIDVWRTPTCGCCEDWL FT QHLRSNGFEVRAHMVEDTAPVRSQAGMPARYGSCHTARVQGYTVEGHVPAADIRRLLRD FT KPRAVGLTAPGMPIGSPGMDGPAYGGRRDAYDVLLVQPDGSVRVFQAYR" FT misc_feature complement(155461..155532) FT /note="Signal peptide predicted for BP0156 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 24 and 25" FT CDS complement(155638..157035) FT /transl_table=11 FT /locus_tag="BP0157" FT /product="two-component sensor kinase" FT /note="Similar to Escherichia coli sensor kinase CusS or FT B0570 SW:CUSS_ECOLI (P77485) (480 aa) fasta scores: E(): FT 3e-34, 33.124% id in 477 aa, and to Pseudomonas aeruginosa FT probable two-component sensor pa1438 TR:Q9I3Q9 FT (EMBL:AE004573) (481 aa) fasta scores: E(): 1e-37, 35.177% FT id in 452 aa" FT /db_xref="GOA:Q7W0H5" FT /db_xref="InterPro:IPR003660" FT /db_xref="UniProtKB/TrEMBL:Q7W0H5" FT /protein_id="CAE40536.1" FT /translation="MRLRTPSMQRRLTLWLGVIALLASSLAGALLFWTLKQEVQRQEIT FT EARGKAELIEHLVGMQSHTSRALSDMLDGIQAGHGHLGIWITSPDGTLRYGNATPEVLS FT VTDDDEVLLRNADDTRMRGVRLTLPGPPEAGATLTVAVNTLANARFLYAYGTALLLICA FT LWIGATVVLAAWAVRRTLAPVRRLSGQAASIQPEHLDVRLPVVGIDRELSDLVASFNRT FT LDRLQEAYQKMEGFNADVAHELRTPLATLINGAQVTLSSPRSAEELREALTSNLEELED FT LKTLVNDMLFLARADRGEQAADLAPARLEQEALRVAEYFEATLEAQALHVAVQGSATCA FT ANPGLVRRALANLLANAIRATPRGATITVRCAALPDGAARLTVHNPGPPIPAADLPRIF FT DRFFRSGGARPPRGEGHGLGLAIVRAIARMHNGGVTAASGPAGTEIGFSLGARPAQDDK FT RVIRATD" FT misc_feature complement(155677..156015) FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, phytochrome-like ATPase" FT misc_feature complement(156142..156342) FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain" FT misc_feature complement(156352..156564) FT /note="HMMPfam hit to PF00672, HAMP domain" FT misc_feature complement(join(156505..156570,156934..156999)) FT /note="2 probable transmembrane helices predicted for FT BP0157 by TMHMM2.0 at aa 12-34 and 155-177" FT misc_feature complement(156949..157035) FT /note="Signal peptide predicted for BP0157 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.685 between residues 29 and 30" FT CDS complement(157032..157709) FT /transl_table=11 FT /locus_tag="BP0158" FT /product="two-component response regulator" FT /note="Similar to Escherichia coli transcriptional FT regulatory protein PcoR SW:PCOR_ECOLI (Q47456) (226 aa) FT fasta scores: E(): 4.7e-46, 53.846% id in 221 aa, and to FT Pseudomonas aeruginosa probable two-component response FT regulator Pa1437 TR:Q9I3R0 (EMBL:AE004573) (229 aa) fasta FT scores: E(): 9.4e-56, 63.393% id in 224 aa" FT /db_xref="GOA:Q7W0H4" FT /db_xref="HSSP:1KGS" FT /db_xref="InterPro:IPR006291" FT /db_xref="UniProtKB/TrEMBL:Q7W0H4" FT /protein_id="CAE40537.1" FT /translation="MCILVIEDEPKLADYLHKGLSEQSHIVDVARDGVNGRHLALEGDY FT ELVILDVMLPDIDGFAVLAALRAAARNTPVLMLTARDRVEDRVRGLEGGADDYLVKPFA FT FSELLARVHALQRRGRSQESTLLRLADLELDLASRKAQRGGRRLDLTAKEFSLLALLLR FT RQGQILSRTTLAEQVWDMNFDSDTNVIDVAIRRLRGKLDDPYDAKLLHTVRGMGYVLES FT RPS" FT misc_feature complement(157059..157274) FT /note="HMMPfam hit to PF00486, Transcriptional regulatory FT protein, C terminal" FT misc_feature complement(157374..157709) FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain" FT CDS complement(157765..159075) FT /transl_table=11 FT /gene="phoR" FT /gene_synonym="nmpB" FT /locus_tag="BP0159" FT /product="phosphate regulon sensor protein" FT /note="Similar to Escherichia coli phosphate regulon sensor FT protein PhoR or NmpB or B0400 SW:PHOR_ECOLI (P08400) (431 FT aa) fasta scores: E(): 1e-55, 41.458% id in 439 aa, and to FT Klebsiella pneumoniae phosphate regulon sensor protein PhoR FT SW:PHOR_KLEPN (P45608) (431 aa) fasta scores: E(): 3.2e-55, FT 40.961% id in 437 aa" FT /db_xref="GOA:Q7W0H3" FT /db_xref="InterPro:IPR000014" FT /db_xref="UniProtKB/TrEMBL:Q7W0H3" FT /protein_id="CAE40538.1" FT /translation="MIWLRTLFMIAFWAVMALLAQWLIGDPAGWLLFGAATAAMLLWRS FT WRLHLVSRWAHDPESAPPAAVGPWDDILAPLYRYTRARARELAETRETMQSMLAAAQAL FT PDGVVTLNEDFQIDWANRMARRHLGLRLPADRGHNLLNLLRAPEFVAYAHRGHWPEPIL FT VRLSLNGQERVMMIHLAGYASNQRLLISRDVTQIERLETTRRDFVANVSHELRTPLTVL FT AGFLETLRELPAEALPAEQRDQYMAMMHEQARRMQAIVEDLLTLSTLESSPEADPLAVD FT VGALLRTARQQVEALSNGRHVFEWQIEEGLDVLGSGTELASALSNLLTNAVRYTPDGGR FT IIVRWRRGADGEALYSVQDTGIGIPARHLPRLTERFYRVDRGRSRAAGGTGLGLAITKH FT IAMRHDADLLIDSELGKGSTFTLRFPAERVTGEDPDR" FT misc_feature complement(157792..158133) FT /note="HMMPfam hit to PF02518, Histidine kinase-, DNA FT gyrase B-, phytochrome-like ATPase" FT misc_feature complement(158260..158469) FT /note="HMMPfam hit to PF00512, His Kinase A FT (phosphoacceptor) domain" FT misc_feature complement(159004..159069) FT /note="1 probable transmembrane helix predicted for BP0159 FT by TMHMM2.0 at aa 2-24" FT misc_feature complement(159016..159075) FT /note="Signal peptide predicted for BP0159 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.993) with cleavage site FT probability 0.600 between residues 20 and 21" FT CDS complement(159087..159785) FT /transl_table=11 FT /gene="phoB" FT /locus_tag="BP0160" FT /product="phosphate regulon transcriptional regulatory FT protein" FT /note="Similar to Escherichia coli phosphate regulon FT transcriptional regulatory protein PhoB or B0399 or Z0497 FT or ECS0449 SW:PHOB_ECOLI (P08402) (229 aa) fasta scores: FT E(): 2.6e-52, 59.211% id in 228 aa, and to Vibrio cholerae FT DNA-binding response regulator PhoB or VC0719 TR:Q9KU11 FT (EMBL:AE004158) (229 aa) fasta scores: E(): 1.3e-54, FT 60.526% id in 228 aa" FT /db_xref="GOA:Q7W0H2" FT /db_xref="HSSP:1GXP" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W0H2" FT /protein_id="CAE40539.1" FT /translation="MSSTILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAQTLIRAE FT LPDLILLDWMLPGASGLSLARKLRDEERTRAVPVIMLTAKGAEQDKVDGLEAGADDYIT FT KPFSPKELMARIKAVLRRRAPQLTDDIIDVAGLKLDPVTHRLSGHSQSLSIGPTEFRLL FT HFFMTHPERVFSRSQLLDQVWGDHVFVEERTVDVHIRRLRKALEPSGHDAHVETVRGSG FT YRFTAQVPAR" FT misc_feature complement(159120..159335) FT /note="HMMPfam hit to PF00486, Transcriptional regulatory FT protein, C terminal" FT misc_feature complement(159438..159779) FT /note="HMMPfam hit to PF00072, Response regulator receiver FT domain" FT CDS 159949..160725 FT /transl_table=11 FT /gene="ubiE" FT /locus_tag="BP0161" FT /product="ubiquinone/menaquinone biosynthesis FT methyltransferase" FT /EC_number="2.1.1.-" FT /note="Similar to Escherichia coli ubiquinone/menaquinone FT biosynthesis methyltransferase UbiE or B3833 SW:UBIE_ECOLI FT (P27851) (251 aa) fasta scores: E(): 4.6e-54, 58.871% id in FT 248 aa, and to Neisseria meningitidis FT ubiquinone/menaquinone biosynthesis methlytransferase UbiE FT or Nmb0743 TR:Q9K075 (EMBL:AE002429) (245 aa) fasta scores: FT E(): 3e-64, 68.033% id in 244 aa" FT /db_xref="GOA:Q7W0H1" FT /db_xref="InterPro:IPR004033" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0H1" FT /protein_id="CAE40540.1" FT /translation="MQTPHSQPESAPQGEQSTHFGFQSVPEADKARKVAEVFHSVASRY FT DVMNDLMSAGLHRVWKAFTIGRAAVRPGMKVLDIAGGTGDLARAFAKRAGPSGEVWLTD FT INESMLRVGRDRLTDSGLLVPTAVCDAERLPFPSQYFDRVSVAFGLRNMTHKDRALAEM FT TRVLKPGGKLLVLEFSRVAKPLAPAYDWYSFNVLPWMGKKVANDEASYRYLAESIRMHP FT DQETLAGMLRDAGLDRVQYFNLTAGVAALHEGVRLG" FT misc_feature 160015..160716 FT /note="HMMPfam hit to PF01209, ubiE/COQ5 methyltransferase FT family" FT misc_feature 160081..160128 FT /note="ScanRegExp hit to PS01183, ubiE/COQ5 FT methyltransferase family signature 1." FT misc_feature 160441..160485 FT /note="ScanRegExp hit to PS01184, ubiE/COQ5 FT methyltransferase family signature 2. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 160891..161913 FT /transl_table=11 FT /locus_tag="BP0162" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa5528 TR:Q9HT45 (EMBL:AE004965) (284 aa) fasta FT scores: E(): 1.7e-05, 35.294% id in 323 aa, and to FT Agrobacterium tumefaciens Agr_l_2266p agr_l_2266 FT TR:AAK89700 (EMBL:AE008313) (378 aa) fasta scores: E(): FT 2.7e-05, 28.075% id in 374 aa" FT /db_xref="GOA:Q7W0H0" FT /db_xref="InterPro:IPR007379" FT /db_xref="UniProtKB/TrEMBL:Q7W0H0" FT /protein_id="CAE40541.1" FT /translation="MSRSRFSRFCAMALVAVAGTAMVGASFDAEARRMGGGSSFGRQST FT NITQQRQAVTPPAAGAGSTAGATSAARPATAAAGTAAAGTAAKSGMSRWLGPIAGIAAG FT LGLAALLSHLGLSGAFAEFMASMLLIALVVFAVIFIVRRLRGGAPRQAMQGAYGAAGGN FT RPGQPSQQPMWRESLNPAPAQQPAAAPVAAAAPAAAAAALPKAGDDGNWFIPGDFDTPR FT FLQQAKDQFVRIQGIWDSGEVESLRDFLTDDLISELKPQLEARGAAANKTEVVLLNAEL FT LGIETVSDGHLASVRFSGMLREAPGTEAFRFEEVWNLFKPADGGWLLAGIQQIPVEHAS FT " FT misc_feature 160891..160959 FT /note="Signal peptide predicted for BP0162 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.602 between residues 23 and 24" FT misc_feature join(160903..160971,161170..161238,161248..161316) FT /note="3 probable transmembrane helices predicted for FT BP0162 by TMHMM2.0 at aa 5-27, 94-116 and 120-142" FT CDS 162091..162777 FT /transl_table=11 FT /locus_tag="BP0163" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli hypothetical 22.2 kDa FT protein in ubiE-rfaH intergenic region YigP or B3834 FT SW:YIGP_ECOLI (P27852) (201 aa) fasta scores: E(): 0.0058, FT 27.397% id in 219 aa, and to Vibrio cholerae hypothetical FT protein Vc0084 TR:Q9KVQ5 (EMBL:AE004099) (207 aa) fasta FT scores: E(): 0.00021, 24.413% id in 213 aa" FT /db_xref="UniProtKB/TrEMBL:Q7W0G9" FT /protein_id="CAE40542.1" FT /translation="MSLLLRTPRGWSAPVDSMLPFAALPTLPRIAARALNALLERESWA FT RDRLARHAGKTVRFALGGFALSLTIDSEGRVQEADSAVVPNVTLSAAESSSLARLLPGD FT GRADFADLTHISGDAALAQVVADLARDLRWDAEDELARVVGDIPAARLLGGARALAGGA FT REAGGRLARNVSEYLAEESAVLVGRPQWEQWRLDLARFGADSDALARSAAALEARLARL FT DARRGA" FT CDS 162774..164336 FT /transl_table=11 FT /gene="ubiB" FT /gene_synonym="aarF" FT /locus_tag="BP0164" FT /product="probable ubiquinone biosynthesis protein" FT /note="Similar to Escherichia coli probable ubiquinone FT biosynthesis protein UbiB or AarF or B3835 or Z5357 or FT ECS4765 SW:UBIB_ECOLI (P27854) (546 aa) fasta scores: E(): FT 8e-94, 52.165% id in 485 aa, and to Neisseria meningitidis FT probable ubiquinone biosynthesis protein UbiB or Nmb0559 FT SW:UBIB_NEIMB (Q9K0N0) (503 aa) fasta scores: E(): FT 2.7e-107, 58.400% id in 500 aa" FT /db_xref="GOA:Q7W0G8" FT /db_xref="InterPro:IPR000719" FT /db_xref="UniProtKB/TrEMBL:Q7W0G8" FT /protein_id="CAE40543.1" FT /translation="MNAMLTFLRLLRILLVSLRYGLDELVLSSLNHPLATCLLRIMRLG FT TRPRAPRGARLRMALESLGPIFVKFGQVLSTRRDLIPADIANELALLQDRVPPFPSAQA FT AACIEAALGAPPAQLFAQFDVDPVASASIAQVHFAVLHDGREVAVKVLRPGMLNVIEKD FT LALLRVVAGVIERLGADGRRLKPREVVAEFDKYLHDELDLVREASNCSQLRRNFGPESG FT RGEMLIVPEVVWEYTASTVFTMQRMYGIPVGQVDRLRAAGIDIPTLARSGVEIFFTQVF FT TDGFFHADMHPGNIYVSDAPQTLGRYIALDFGIVGSLSEFDKNYLAQNFLAFFHRDYRR FT VAQLHIESGWVPPETREEELEGAVRAVCEPYFDRPLAEISLGQVLLRLFQTSRRFNVEI FT QPQLVLLQKTLLNVEGLGRQLDPNLDLWKTAKPYLEHWMRQRIGLTGLRQSLAKEAGQW FT SQMLPSLPRLVHEHFSRPNLTPHLLAEMNRLRRAQEQGNRLTAALTAVLAVAVAVALWA FT LSR" FT misc_feature 164268..164327 FT /note="1 probable transmembrane helix predicted for BP0164 FT by TMHMM2.0 at aa 499-518" FT CDS 164511..164915 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0165" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to The N-terminal region of FT Burkholderia cepacia hypothetical 33.4 kDa protein FT TR:Q9ZGQ4 (EMBL:AF076477) (283 aa) fasta scores: E(): FT 6e-45, 81.538% id in 130 aa" FT /db_xref="PSEUDO:CAE40544.1" FT CDS complement(164895..165845) FT /transl_table=11 FT /locus_tag="BP0166" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTB4" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTB4" FT /protein_id="CAE40545.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI" FT repeat_region 164895..164926 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(164895..165947) FT misc_feature complement(164931..165464) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(165522..165587) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT CDS join(165948..167273,167273..167281) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0167" FT /product="C-terminal region of a probable ABC transporter, FT ATP-binding protein (Pseudogene)" FT /note="Pseudogene. This CDS is the C-terminal region of FT BP3805 which was disrupted by the insertion of IS481 FT element. In addition, this CDS appears to have a frameshift FT mutation following codon 442. Similar to Vibrio cholerae FT peptide ABC transporter, ATP-binding protein vc0170 FT TR:Q9KVH6 (EMBL:AE004107) (571 aa) fasta scores: E(): FT 2.9e-105, 64.944% id in 445 aa, and to Rhizobium loti ABC FT transporter ATP-binding protein mlr6287 TR:Q989T5 FT (EMBL:AP003008) (616 aa) fasta scores: E(): 2.5e-68, FT 46.991% id in 432 aa" FT misc_feature 165948..166250 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 166020..166064 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT misc_feature 166581..167159 FT /note="HMMPfam hit to PF00005, ABC transporter" FT misc_feature 166602..166625 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 166929..166973 FT /note="ScanRegExp hit to PS00211, ABC transporters family FT signature. Confirmed by InterPro eMOTIF pattern match." FT variation 167273 FT /note="(G)1 in pertussis; (G)2 in parapertussis" FT CDS complement(167287..168189) FT /transl_table=11 FT /locus_tag="BP0168" FT /product="putative membrane protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa1451 TR:Q9I3Q0 (EMBL:AE004574) (447 aa) fasta FT scores: E(): 4.6e-21, 48.387% id in 217 aa, and to FT Rhizobium loti Mll4127 protein Mll4127 TR:Q98EQ9 FT (EMBL:AP003003) (294 aa) fasta scores: E(): 3.1e-18, FT 37.011% id in 281 aa" FT /db_xref="InterPro:IPR007621" FT /db_xref="UniProtKB/TrEMBL:Q7W0G7" FT /protein_id="CAE40547.1" FT /translation="MPHVRPSNAWRFLRTLWLGAWLAGWALLAQAQQLAPVPEFGARVV FT DQSGVLDAAQRQRLEAQLAALEQRKGAQVAVLIVPSTAPETIEQYATRAFEKWKIGRDK FT VDDGVLLLMASDDRALRIEVGYGLEGAIPDSAAGRIINEYIVPRLRAGDWPGAVQAGVT FT ALERRIEGEELPPPAASGRDEGSRLAGIRGWLGENGIAALVVLLILPGPIAAALAGVGV FT AIYMQSISAGLAMALLVLGIKVIIKALPSGGGGGGGGGGGSGGGGFGGWRGGSGSGGFG FT GFRGGGGGRSGGGGASGRW" FT misc_feature complement(join(167437..167502,167524..167589)) FT /note="2 probable transmembrane helices predicted for FT BP0168 by TMHMM2.0 at aa 200-222 and 229-251" FT misc_feature complement(168097..168189) FT /note="Signal peptide predicted for BP0168 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.997) with cleavage site FT probability 0.971 between residues 31 and 32" FT CDS complement(168167..168796) FT /transl_table=11 FT /locus_tag="BP0169" FT /product="putative exported protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0537 TR:Q9I5Z9 (EMBL:AE004490) (202 aa) fasta FT scores: E(): 8.8e-51, 71.981% id in 207 aa, and to FT Rhizobium loti Mll4130 protein TR:Q98EQ7 (EMBL:AP003003) FT (212 aa) fasta scores: E(): 2.3e-29, 48.205% id in 195 aa" FT /db_xref="InterPro:IPR007156" FT /db_xref="UniProtKB/TrEMBL:Q7W0G6" FT /protein_id="CAE40548.1" FT /translation="MTITRWLGAGLLALLTTLLSGCGYNAIQAADEQVKASWSQVLNQY FT QRRADLVPRLVKVVDAYMTHERQVLVEVTEARAKVGRVQLTADQLDDPAAVQRFQQAQG FT ELSSALSRLLVVTENYPQLKAEGLFRDLQTELAGTENRLAVERERYVRSVQAYNVLVRQ FT FPEVITAKVFGYAPKANFGVDNEAEITRAPEVKFSNEGGSAPRPAQ" FT misc_feature complement(168710..168775) FT /note="1 probable transmembrane helix predicted for BP0169 FT by TMHMM2.0 at aa 7-29" FT misc_feature complement(168710..168796) FT /note="Signal peptide predicted for BP0169 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.770 between residues 29 and 30" FT misc_feature complement(168731..168763) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 169079..170509 FT /transl_table=11 FT /gene="rhlE" FT /locus_tag="BP0170" FT /product="putative ATP-dependent RNA helicase" FT /note="Similar to Escherichia coli putative ATP-dependent FT RNA helicase RhlE or B0797 SW:RHLE_ECOLI (P25888) (454 aa) FT fasta scores: E(): 9.3e-80, 58.658% id in 462 aa, and to FT Anabaena variabilis dead box RNA helicase homolog CrhA FT TR:Q9ZI52 (EMBL:AF040045) (425 aa) fasta scores: E(): FT 4e-74, 59.953% id in 422 aa. Also similar to BP3395 FT (50.740% identity in 473 aa overlap), and to BP3057 FT (41.314% identity in 472 aa overlap)." FT /db_xref="GOA:Q7W0G5" FT /db_xref="HSSP:1HV8" FT /db_xref="InterPro:IPR014001" FT /db_xref="UniProtKB/TrEMBL:Q7W0G5" FT /protein_id="CAE40549.1" FT /translation="MTTSISFADLGLADSLLRAIADTGYTAPTPIQAQAIPLVLQGGDL FT LAAAQTGTGKTAGFTLPILHRLMQTKPAARKPGRPRCLILTPTRELTAQVAESVQTYGK FT YASLSSMVMFGGVNINPQISALKKPLDILVATPGRLLDHAGQKTVDLSGVEILVLDEAD FT RMLDMGFIRDIRKVLALLPKQRQNLLFSATFSDEIRSLARGVLNDPGEVSVTPRNTATE FT LVTQTVHLVEQHHKRDLVSHLIRESGWHQVLVFTRTKHGANRLAEKLVKDGLSAVAIHG FT NKSQSARTRALSGFKDGSVAVLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRT FT GRAGATGAAVSLVDDSEIKLLKAIERLIKKPIERRAVDGWTPPAGGPTAEDRADRGQRA FT GGDNRAPQARDGQRRATGAHPQGSAPRNAAGPRADAKRNDAGRPQGRAPGETGATRAPA FT PARNRPVGNGTRGVLLGK" FT misc_feature 169130..169780 FT /note="HMMPfam hit to PF00270, DEAD/DEAH box helicase" FT misc_feature 169223..169246 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 169550..169576 FT /note="ScanRegExp hit to PS00039, DEAD-box subfamily FT ATP-dependent helicases signature. Confirmed by InterPro FT eMOTIF pattern match." FT misc_feature 169865..170110 FT /note="HMMPfam hit to PF00271, Helicase conserved FT C-terminal domain" FT CDS 170543..171172 FT /transl_table=11 FT /locus_tag="BP0171" FT /product="LysE family efflux protein" FT /note="Similar to Escherichia coli homoserine/homoserine FT lactone efflux protein RhtB or B3824 SW:RHTB_ECOLI (P27847) FT (206 aa) fasta scores: E(): 2e-23, 37.198% id in 207 aa, FT and to Pseudomonas aeruginosa hypothetical protein Pa5249 FT TR:Q9HTU5 (EMBL:AE004937) (209 aa) fasta scores: E(): FT 4.7e-39, 54.106% id in 207 aa. Also similar to BP0568, FT 42.654% identity in 211 aa overlap" FT /db_xref="GOA:Q7W0G4" FT /db_xref="InterPro:IPR001123" FT /db_xref="UniProtKB/TrEMBL:Q7W0G4" FT /protein_id="CAE40550.1" FT /translation="MTLSTWLTFFVASWAISFSPGAGAISAMSSGLKYGFARGYWNTAG FT LILGILFQFLIVAVGLGAVLATSELAFTLVKYAGVVYLIYLGMRQIRTDAAPVTVDAGD FT PHRASIRELVGRGFLINTMNPKGTVFLLAVVPQFVDPAQPLTQQYLALAGTLAFTDLVA FT MDVYTLLAAKVLRMLRKAHHIRWMNRVFGSLFILAGVFLATFRRHS" FT misc_feature 170543..170614 FT /note="Signal peptide predicted for BP0171 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.990) with cleavage site FT probability 0.432 between residues 24 and 25" FT misc_feature join(170570..170638,170672..170740,170750..170803, FT 170891..170959,170987..171055,171092..171160) FT /note="6 probable transmembrane helices predicted for FT BP0171 by TMHMM2.0 at aa 10-32, 44-66, 70-87, 117-139, FT 149-171 and 184-206" FT misc_feature 170747..171067 FT /note="HMMPfam hit to PF01810, LysE type translocator" FT CDS 171197..172828 FT /transl_table=11 FT /gene="prfC" FT /gene_synonym="tos" FT /gene_synonym="miaD" FT /locus_tag="BP0172" FT /product="peptide chain release factor 3" FT /note="Similar to Escherichia coli peptide chain release FT factor 3 PrfC or Tos or MiaD or B4375 SW:RF3_ECOLI (P33998) FT (528 aa) fasta scores: E(): 2e-108, 53.537% id in 523 aa, FT and to Neisseria meningitidis peptide chain release factor FT 3 Nmb0626 TR:Q9K0H6 (EMBL:AE002418) (531 aa) fasta scores: FT E(): 5.3e-121, 59.699% id in 531 aa" FT /db_xref="GOA:Q7W0G3" FT /db_xref="InterPro:IPR004161" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0G3" FT /protein_id="CAE40551.1" FT /translation="MRQYNPPAMNIPQEVARRRTFAIISHPDAGKTTLTEKLLLFAGAI FT QIAGSVKARKASRHASSDWMEIEKQRGISVASSVMQMEYRDCVINLLDTPGHQDFSEDT FT YRVLTAVDAALMVIDAANGVEPQTIRLLQVCRARNTPIITFINKLDREVREPLELLSEI FT EGHLGMDTVPFSWPVGMGKAFGGVFDIRRNRMRIFRAGQERRGEDDEFIDGLDNPEIPR FT RFGAAFAQASGEIELINEAAPAFDREAFLAGKQTPVFFGSAINNFGVQEVLDALVDQAP FT APGPRQALEREVRPDEPKFTGVVFKVQANMDPAHRDRVAFVRVSSGRFERGMRLKVART FT GKEMRPNNVVSFLSQRRELLDEAYAGDVIGIPNHGVLQLGDVLTEGESLRFTGLPFFAP FT ELFQAVEVKDPLRTKQLRVGLTQLGEEGAIQVFRPEAAGGALLLGAVGQLQFEVVAHRL FT KTEYGVDARMMPSRYTSARWITSDDPRALRKFMDANAAHIAYDVVDAAAFLITSPAQLR FT VAEDLYPNVKFHALREHGGKVFGDKA" FT misc_feature 171242..172621 FT /note="HMMPfam hit to PF00009, Elongation factor Tu family" FT misc_feature 171383..171430 FT /note="ScanRegExp hit to PS00301, GTP-binding elongation FT factors signature. Confirmed by InterPro eMOTIF pattern FT match." FT CDS 172853..173536 FT /transl_table=11 FT /locus_tag="BP0173" FT /product="putative exported protein" FT /note="Similar to Mycobacterium leprae hypothetical proline FT rich protein Ml1505 TR:Q9CBW9 (EMBL:AL583922) (182 aa) FT fasta scores: E(): 7, 23.977% id in 171 aa" FT /db_xref="UniProtKB/TrEMBL:Q7W0G2" FT /protein_id="CAE40552.1" FT /translation="MRVAMSWRLLIATLLVALGAAAWGGIQLGDWLVAHAPQAAPAPGQ FT EGDASQQPVLDANGRSYVAQPPQPRVDGTLGVPDQPASRDWAVNTVSLFDTTGDPAVQI FT SRDSITMDRAREIAANSDVPLPSGNSDITTLDLQALGGQAPIVPQEAIPASGMQQNPAA FT VAQVAPQTNRAGGGNWQDALRRELAHCATQGFFERPSCSWAARNKYCAPNRAWGTMAEC FT PRRPD" FT misc_feature 172853..172924 FT /note="Signal peptide predicted for BP0173 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.999) with cleavage site FT probability 0.746 between residues 24 and 25" FT misc_feature 172871..172930 FT /note="1 probable transmembrane helix predicted for BP0173 FT by TMHMM2.0 at aa 7-26" FT CDS complement(173618..174094) FT /transl_table=11 FT /gene="bfr" FT /locus_tag="BP0174" FT /product="bacterioferritin" FT /note="Similar to Escherichia coli bacterioferritin Bfr or FT B3336 SW:BFR_ECOLI (P11056) (158 aa) fasta scores: E(): FT 7.8e-33, 60.759% id in 158 aa, and to Pseudomonas FT aeruginosa bacterioferritin BfrB or Pa3531 TR:Q9HY79 FT (EMBL:AE004773) (158 aa) fasta scores: E(): 5.6e-39, FT 68.790% id in 157 aa" FT /db_xref="GOA:Q7W0G1" FT /db_xref="HSSP:1BFR" FT /db_xref="InterPro:IPR009040" FT /db_xref="UniProtKB/TrEMBL:Q7W0G1" FT /protein_id="CAE40553.1" FT /translation="MKGDKTVIQFLNKQLTNELTAINQYFLHARMLRHWGFNKLGKHEY FT EESIGEMKHADRLIERIFMLDGLPNLQDLHKLLIGEDVPELLACDLKLEQAAQATVKEA FT IAHCESVRDYVSRDLFQDILDDTEEHIDYLETQIGLVDQVGLQNYLQSQMEVDG" FT misc_feature complement(173633..174094) FT /note="HMMPfam hit to PF01334, Bacterioferritin" FT repeat_region 174199..174230 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 174199..175251 FT CDS 174301..175251 FT /transl_table=11 FT /locus_tag="BP0175" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE40554.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 174559..174624 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 174682..175215 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(175220..175251) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(join(175248..175760,175759..176109)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0176" FT /product="two-component response regulator (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 117. The sequence has been checked FT and believed to be correct. Similar to Pseudomonas FT aeruginosa two-component response regulator OmpR or Pa5200 FT TR:Q9HTY9 (EMBL:AE004933) (247 aa) fasta scores: E(): FT 0.0013, 31.250% id in 256 aa, and to Vibrio cholerae FT response regulator homolog OmpR TR:Q9X2S6 (EMBL:AF051157) FT (240 aa) fasta scores: E(): 0.0022, 29.020% id in 255 aa" FT /db_xref="PSEUDO:CAE40555.1" FT variation complement(175759) FT /note="G in pertussis; G(TG) in parapertussis" FT CDS 176367..176894 FT /transl_table=11 FT /locus_tag="BP0177" FT /product="putative lipoprotein" FT /note="Similar to Synechocystis sp hypothetical 31.6 kDa FT protein Slr0841 TR:Q55426 (EMBL:D64003) (291 aa) fasta FT scores: E(): 3.1e-05, 31.081% id in 148 aa, and to FT Escherichia coli heat shock protein HslJ or B1379 FT SW:HSLJ_ECOLI (P52644) (140 aa) fasta scores: E(): 0.38, FT 28.571% id in 84 aa. Also similar to the N-terminal region FT of the adjacent CDS, BP0178, 44.643% identity (46.584% FT ungapped) in 168 aa overlap" FT /db_xref="InterPro:IPR005184" FT /db_xref="UniProtKB/TrEMBL:Q7W0G0" FT /protein_id="CAE40556.1" FT /translation="MPIRPFTRACLVAALGAVLAGCASNTGQAQAEGAAAANAATSADS FT FAQTTWELVRWTKADGGYRVISHGDNGEPIFLTFFAQGKQYRVSGFAGCNRYTGAYRLR FT DGKLQITAPASTRMACPQPERARLEADYLRALAQIRSFTLDSGGAPRHLTFNVQGGDVL FT DFMRRQDPPTPE" FT misc_feature 176367..176459 FT /note="Signal peptide predicted for BP0177 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.0.807 between residues 31 and 32" FT misc_feature 176400..176432 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 176986..177801 FT /transl_table=11 FT /locus_tag="BP0178" FT /product="putative lipoprotein" FT /note="Similar to Synechocystis sp hypothetical 31.6 kDa FT protein slr0841 TR:Q55426 (EMBL:D64003) (291 aa) fasta FT scores: E(): 0.00023, 33.775% id in 151 aa. Its N-terminal FT region is similar to the adjacent CDS, BP0177, 44.643% FT identity (46.584% ungapped) in 168 aa overlap" FT /db_xref="InterPro:IPR005184" FT /db_xref="UniProtKB/TrEMBL:Q7W0F9" FT /protein_id="CAE40557.1" FT /translation="MSAISPGRVALSFSLLLALAACAADPAGGGASRAQAPERHSDMLA FT QTNWELARWTRPGGALRPVPHGGAGKTAPITLSFTHQRGAARLAGFAGCNNYSGQYTIA FT NGLLIVTAPPVSTRMACANADLARLEQDYLAGLTAVTASRLDHDTRPQRLTLALRSGDV FT LDFARRADPLAGGQPGAAKLVYVASSKAPCSAGAGRAQCYQVRDSASQPWLLWYGDITG FT FAFQPGIEYRLRVVEVRDPNPPADASGVRWVLDSVVEQRVAAPRPAPAP" FT CDS 177862..178596 FT /transl_table=11 FT /locus_tag="BP0179" FT /product="conserved hypothetical protein" FT /note="Similar to Xylella fastidiosa hypothetical protein FT Xf2609 TR:Q9PAA9 (EMBL:AE004068) (299 aa) fasta scores: FT E(): 9.9e-46, 55.230% id in 239 aa, and to Pseudomonas FT aeruginosa hypothetical protein Pa0858 TR:Q9I583 FT (EMBL:AE004520) (312 aa) fasta scores: E(): 1.2e-32, FT 42.017% id in 238 aa" FT /db_xref="InterPro:IPR001763" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0F8" FT /protein_id="CAE40558.1" FT /translation="MTAVVNIAAYKFVSIANPADLREPMLEQAGQRQLKGTVLLAPEGI FT NLFLAGAADAIEGFLRWLRADARFADLQAKYSESARMPFRKLLVKVKREIIRMDHPAIR FT PEAGRAPAVDAATLRRWLAQGRDDQGRELVMLDTRNAFEVEVGTFRGALDWRIERFTQF FT PQAVRDNQAALAGKTVVSFCTGGIRCEKAAIYMAEAGIEHVYQLEGGILKYFEETDGAG FT FDGACFVFDERVALDAALAPQA" FT CDS complement(178634..180712) FT /transl_table=11 FT /gene="metG" FT /locus_tag="BP0180" FT /product="methionyl-tRNA synthetase" FT /EC_number="6.1.1.10" FT /note="Similar to Escherichia coli methionyl-tRNA FT synthetase MetG or B2114 SW:SYM_ECOLI (P00959) (676 aa) FT fasta scores: E(): 2.1e-45, 51.783% id in 701 aa, and to FT Neisseria meningitidis methionyl-tRNA synthetase Nmb0030 FT TR:Q9K1Q0 (EMBL:AE002361) (685 aa) fasta scores: E(): FT 1.8e-143, 52.857% id in 700 aa" FT /db_xref="GOA:Q7W0F7" FT /db_xref="HSSP:1PFV" FT /db_xref="InterPro:IPR002547" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0F7" FT /protein_id="CAE40559.1" FT /translation="MSRTLFVTTALPYANGSFHIGHIMEYIQADIWVRSMRMAGHTVHF FT VGADDAHGAPIMLKAEKEGITPQALVARYAAERPRYLDGFHIRFDHWHSTDTPENVALS FT QEIYRALKSEGLIETRSIEQFYDPVKGMFLADRYIKGECPRCHAKDQYGDSCEVCGAVY FT APTELINPYSALTGAAPVLKSSDHFFFKLSDPRCVEFLQQWTTGANRQGVKHLQAEVQA FT KTREWLVGDDGEAKLGDWDISRDAPYFGIEIPDAPGKYFYVWLDAPVGYLASLKSYCAA FT KGLDFDALLDPAGPTEQVHFIGKDIIYFHALFWPAMLKFAGRKTPDQLNVHGFITVSGE FT KMSKSRGTGISPLRYLEIGMDAEWLRYYMAAKLNARVEDMDFNPEDFVARVNSDLVGKY FT VNIASRAAAFITRHFDGELAYDGDTDALAAEFAQQAESIRAAFEAREYNRAVREIMAHA FT DRINQAFDAAQPWVMAKGIGAADAATRARLQDICSRALAGFKALSVMLAPVLPALASRV FT ARELFGANADFAWGDAQQLPQRVAPFKHLMQRVDPKLLDDLFEPPAAEASAPAALPGGE FT ALADTITIDDFAKIDLRIARIVNCEEVEGSTKLLRLTLDVGEGRHRNVFSGIKSAYQPQ FT DLVGKLTVLVANLAPRKMKFGVSEGMVLAASHADEKAEPGIYVLEPWPGAQPGMRVR" FT misc_feature complement(178643..178939) FT /note="HMMPfam hit to PF01588, Putative tRNA binding FT domain" FT misc_feature complement(179369..180709) FT /note="HMMPfam hit to PF00133, tRNA synthetases class I (I, FT L, M and V)" FT misc_feature complement(180644..180679) FT /note="ScanRegExp hit to PS00178, Aminoacyl-transfer RNA FT synthetases class-I signature." FT CDS complement(180962..181234) FT /transl_table=11 FT /locus_tag="BP0181" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti hypothetical/unknown FT transmembrane protein Smc03794 TR:CAC47756 (EMBL:AL591793) FT (83 aa) fasta scores: E(): 4.5, 30.488% id in 82 aa" FT /db_xref="UniProtKB/TrEMBL:Q7W0F6" FT /protein_id="CAE40560.1" FT /translation="MVNTLFRFFSAALFALLGLIGMMMALVFMASTAIAVGVLYLVAKV FT RGKPFGVRAYWSQRQAARPGPFQAASAPFGQPRGDVIDVEAREVR" FT misc_feature complement(181109..181174) FT /note="1 probable transmembrane helix predicted for BP0181 FT by TMHMM2.0 at aa 20-42" FT misc_feature complement(181130..181234) FT /note="Signal peptide predicted for BP0181 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.867 between residues 35 and 36" FT CDS 181333..182421 FT /transl_table=11 FT /locus_tag="BP0182" FT /product="putative iron sulfur binding protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa3481 TR:Q9HYC8 (EMBL:AE004769) (364 aa) fasta FT scores: E(): 6.1e-63, 54.270% id in 363 aa, and to Xylella FT fastidiosa polysaccharide export protein Xf2301 TR:Q9PB44 FT (EMBL:AE004041) (303 aa) fasta scores: E(): 3.8e-62, FT 67.424% id in 264 aa. Also similar to BP1467, 60.000% FT identity (60.167% ungapped) in 360 aa overlap." FT /db_xref="GOA:Q7W0F5" FT /db_xref="InterPro:IPR019591" FT /db_xref="UniProtKB/TrEMBL:Q7W0F5" FT /protein_id="CAE40561.1" FT /translation="MMSITIEQIRGALAGVADPQTGLELNVCVKDRDIHLAADPAALTI FT ELGYPAGGVADSVRALAGAALAAAGLGAVRVAVTWNIIAHAVQPGLKPLPQVRNIIAVA FT SGKGGVGKSTTAVNLALALAAEGARAGLLDADIYGPSVPAMLGLAGRPESRDNKTMEPL FT VGHGLQANSIGLLIDADAPAIWRGPMVTQALEQLLRQTNWRDLDYLVVDMPPGTGDIAL FT TLAQKVPVAGAVIVTTPQDIALLDARKGLRMFQKVHVPILGVVENMAVHICPQCGHAEH FT IFGAGGGRRVAEQYEVPWLGSLPLQRAIREQTDAGNPTVAAEPESEVAGIYRDIARRVA FT ARIAGLPRDMAGKLPAVVVRPA" FT misc_feature 181627..181719 FT /note="HMMPfam hit to PF00142, 4Fe-4S iron sulfur cluster FT binding proteins, NifH/frxC family" FT misc_feature 181648..181671 FT /note="ScanRegExp hit to PS00017, ATP/GTP-binding site FT motif A (P-loop)." FT misc_feature 181939..181989 FT /note="ScanRegExp hit to PS01215, Mrp family signature. FT Confirmed by InterPro eMOTIF pattern match." FT CDS 182425..184329 FT /transl_table=11 FT /locus_tag="BP0183" FT /product="putative exported protein" FT /note="Similar to Xanthomonas oryzae pvoryzae putative FT outer membrane protein TR:Q9EY32 (EMBL:AY010120) (593 aa) FT fasta scores: E(): 8.2e-16, 24.540% id in 652 aa, and to FT Pseudomonas aeruginosa hypothetical protein Pa2543 FT TR:Q9I0U1 (EMBL:AE004682) (579 aa) fasta scores: E(): FT 9.1e-13, 24.342% id in 608 aa" FT /db_xref="GOA:Q7W0F4" FT /db_xref="InterPro:IPR019825" FT /db_xref="UniProtKB/TrEMBL:Q7W0F4" FT /protein_id="CAE40562.1" FT /translation="MRRILRVCPALLFALAAGQVHAKLPEVIVDPGGVPPAALQAINSA FT VDAIARLSEDQDGGEIDRLRRRARDATLAALATQGYFTPTVTLTPGTDVGGETWDIAIE FT PGPRARVASVDLKFTGRVARPEYAARIQKWRDDWALKAGQPFINGDWNKAKSGLLDAVS FT TRDFLLAHMTHSLAEVDAETAQVRLSVEIDSGPAVRMGALQTDGLQRVPESLVRRYVKY FT SEGAAYDQDKLDQWQQELQSTAFFRGAFVTLDQGARGGQDDVKVTAPGASARAPGSSGL FT ASVAPAGDAEVAGGPTAAAPVLDSQGEITLPVDVRVVEAPPKRLAVSLGVDDEAGVRFE FT TIYRQNVVFGQPVTMETGLGVDRLRQRAYLDFNLPPDERGRKDSFGLLFDHSDVQELDV FT TRYALGVTRLQERKGAGDSRVEYETRWGGLLAHDHVKIDGGDEYDLPTATLTAEWLRRD FT VNSKYDPREGNLIAVGGGVGATLDDGQPYMRLRLRGQKWWPIGKLDVLTLRGEVGRLWS FT NGRTRVPDDFGFRTGGARSIRGYRYQSIGVEQDDAIVGAPTLAVASVEYDHYFNERWGI FT GVFVDAGDAAESFGDMDIAVGYGVGARVRTPAGPLFLDVAYGQRERDLRLHFSLGIAF" FT misc_feature 182425..182490 FT /note="Signal peptide predicted for BP0183 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.999 between residues 22 and 23" FT misc_feature 182986..183006 FT /note="ScanRegExp hit to PS00307, Legume lectins beta-chain FT signature." FT CDS 184326..188024 FT /transl_table=11 FT /locus_tag="BP0184" FT /product="putative exported protein" FT /note="Similar to Neisseria meningitidis putative FT periplasmic protein Nma0295 TR:Q9JWM6 (EMBL:AL162752) (1371 FT aa) fasta scores: E(): 1.4e-18, 23.644% id in 1383 aa, and FT to Pseudomonas aeruginosa hypothetical protein Pa2542 FT TR:Q9I0U2 (EMBL:AE004682) (1221 aa) fasta scores: E(): FT 7.2e-14, 27.344% id in 1280 aa" FT /db_xref="InterPro:IPR007452" FT /db_xref="UniProtKB/TrEMBL:Q7W0F3" FT /protein_id="CAE40563.1" FT /translation="MSKIWGVVRHILVWWVPGVAMLAALACGFVFWTVASQNGTRLLLD FT TVARQLDGEIAGVRGSVLRGLRVDRIRLSVADVDVAVDDLRLDVAWRALGQRLLHVREL FT AATRVEVGLHTPATPPPDSDEPFALRLPVELALDRLSLGEFVLRQDGEPLPVSAGELQA FT SLAAGRHGARLTLDSLRVTHAVGTLRAQGRLDVASLAQPWPLTASLDLQAQGSGPESPL FT CLAPLLDARDKTAKDKAAKDKGKDKGKDKGKDKGKDKGKDKGKDKGKDKGKDKGKDDAG FT EKPDEPADPCGLALQVQAQGTLEQLEAELTGAGQGLALEARAGLLPQAPFPLRTASLKL FT TREDKSSLAATLDWQPQPGQPGRDRVVATFEAERLDLQRLAGEAIPPAMLSARGGLDAE FT VDDLSSLHRATLTLDVTKGSSWNRHPLAGKVAASVSALGDPPGAFATAAPAQPHALPGG FT LWVDQLDVDLQLGPNRVRAQGKLDERAGALKLDAQAPRLDAFWPGIPGAASVKAALDGA FT LARHRGRIEAAYTPADARARVLGRARAQAQLEFSGGWGAGPAAEGAAAGWRGSVSRLTA FT DSAGFALALERPVTLAYVPEALAPQWQWQVGATTLALTFPDKQRVALAHAASRGGAGRW FT ETAGRADALVITAAMVRQILVALDPEAVARAERDSGSPVNAPVPAAQRRISLDASWDLK FT FAGALAGKVRVARRDGDLRIPGDPPIPLGLRTLVLEANATPTGGQASRLDARLDMATAR FT MGAINGTASATLGGLALDPRQPIRVALDADVTDLAWLGLFVGDTLEVGGMLKANVRAQG FT SLDGKWNASGTVNGDKLRVVRIDDGVRLIDGMLRARLQDDRVILDSLRFPASLRVMPAE FT WRTREWVSTNPDAKGGYLEATGQWELSAARGQVRLQLHRFPALQRSDRYGMVSGVVTLD FT AALPRISINGDITADAGWVSLEILQGVPTLDDDVKVVRAGQKNAQGDGPPLQIDMNLKV FT DMGPRFYITGMGLDAGLLGSIQIRLQEGRLTGYGALRTRGGGIEAYGQKLRLRRGTLTF FT QGRLDNPLLDIEALRTGEQVEAGVRVAGTAQRPRIDLVSYPDVSDVEKLSWLVLGRGPD FT ASGGDTALLLSVGTALLGGGQPFYKQFGLDDVSVRSGAIGSSGSLLPDRTVAAGVNRDS FT DADLATQFLVASKRFANGITLSVEQALAGSETVGRASYRLARGLSLDLKAGSVNGIALV FT YRILLDD" FT misc_feature 184326..184403 FT /note="Signal peptide predicted for BP0184 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.928) with cleavage site FT probability 0.359 between residues 26 and 27" FT misc_feature 184359..184427 FT /note="1 probable transmembrane helix predicted for BP0184 FT by TMHMM2.0 at aa 12-34" FT misc_feature 184374..184406 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 188085..188648 FT /transl_table=11 FT /gene="dcd" FT /gene_synonym="dus" FT /gene_synonym="paxA" FT /locus_tag="BP0185" FT /product="deoxycytidine triphosphate deaminase" FT /EC_number="3.5.4.13" FT /note="Similar to Escherichia coli deoxycytidine FT triphosphate deaminase Dcd or Dus or PaxA or B2065 FT SW:DCD_ECOLI (P28248) (193 aa) fasta scores: E(): 8.4e-05, FT 27.389% id in 157 aa, and to Xylella fastidiosa FT deoxycytidine triphosphate deaminase Xf0762 TR:Q9PFB6 FT (EMBL:AE003917) (191 aa) fasta scores: E(): 1.4e-64, FT 81.675% id in 191 aa" FT /db_xref="GOA:Q7W0F2" FT /db_xref="InterPro:IPR011962" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0F2" FT /protein_id="CAE40564.1" FT /translation="MSIKSDRWIRRAAEAGMIEPFEPGQVRTAGGNRIVSYGTSSYGYD FT VRCADEFKIFTNINSTIVDPKQFDEKSFVDFKGDVCIIPPNSFALARTVEYFRIPRSVL FT TICLGKSTYARCGIIVNVTPLEPEWEGHVTLEFSNTTPLPAKVYAGEGCAQMLFLESDE FT VCETSYRDRGGKYQGQRGVTLPRT" FT misc_feature 188256..188642 FT /note="HMMPfam hit to PF00692, dUTPase" FT CDS complement(188656..189078) FT /transl_table=11 FT /locus_tag="BP0186" FT /product="conseved hypothetical protein" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa0803 TR:Q9I5D5 (EMBL:AE004515) (146 aa) fasta FT scores: E(): 1.4e-32, 61.111% id in 144 aa, and to FT Rhizobium loti Mlr1197 protein TR:Q98L34 (EMBL:AP002996) FT (137 aa) fasta scores: E(): 3.1e-19, 44.203% id in 138 aa" FT /db_xref="InterPro:IPR004360" FT /db_xref="UniProtKB/TrEMBL:Q7W0F1" FT /protein_id="CAE40565.1" FT /translation="MPAPATVASPVVTCLRYRNASAAIEWLVHAFGFEAQRIVPGPADT FT IVHAQLTLGSGMIMLASVTDTPFSRYMKQPDEVGGVETQSVYLVVADPDQAYRDAQAAG FT AEILIDIADADYGGRGFSCRDPEGHIWSVGSYDPWQ" FT misc_feature complement(188671..189033) FT /note="HMMPfam hit to PF00903, Glyoxalase/Bleomycin FT resistance protein/Dioxygenase superfamily" FT CDS complement(189106..189525) FT /transl_table=11 FT /locus_tag="BP0187" FT /product="putative lyase" FT /note="Similar to Streptomyces coelicolor putative lyase FT Sci7.11C TR:Q9X9X9 (EMBL:AL096743) (130 aa) fasta scores: FT E(): 0.0041, 33.846% id in 130 aa, and to Streptomyces sp FT daunomycin C-14 hydroxylase TR:Q55078 (EMBL:U50973) (275 FT aa) fasta scores: E(): 0.015, 29.851% id in 134 aa" FT /db_xref="GOA:Q7W0F0" FT /db_xref="InterPro:IPR004360" FT /db_xref="UniProtKB/TrEMBL:Q7W0F0" FT /protein_id="CAE40566.1" FT /translation="MQAQVLINIDVPDAARAALFYERAFGLRPQRRLGPQAIEMAGAAV FT PIYLLEKATGSQAATGTSQGRDYARHWTPVHLDFVVDDCDRAVATAVAAGAMLEDPPHS FT HAWGRIAHLSDPYGNGVCILQFLGEGYDALAAAAP" FT misc_feature complement(189148..189498) FT /note="HMMPfam hit to PF00903, Glyoxalase/Bleomycin FT resistance protein/Dioxygenase superfamily" FT CDS complement(join(189554..190024,190027..190074)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0188" FT /product="putative acetyltransferase (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 16. The frameshift occurs within a FT homopolymeric tract of (T)5. The sequence has been checked FT and believed to be correct. Similar to Rhizobium meliloti FT putative acetyltransferase protein Smb21153 TR:CAC49219 FT (EMBL:AL603645) (166 aa) fasta scores: E(): 4.4e-12, FT 34.731% id in 167 aa, and to Agrobacterium tumefaciens FT Agr_c_4257p TR:AAK88086 (EMBL:AE008149) (171 aa) fasta FT scores: E(): 1.4e-12, 36.364% id in 165 aa" FT /db_xref="PSEUDO:CAE40567.1" FT misc_feature complement(189641..189895) FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family" FT variation complement(190022..190026) FT /note="(T)5 in pertussis; (T)3 in parapertussis" FT CDS 190127..190624 FT /transl_table=11 FT /locus_tag="BP0189" FT /product="hypothetical protein" FT /note="Similar to the C-terminal regions of Deinococcus FT radiodurans conserved hypothetical protein Dr0535 TR:Q9RWY0 FT (EMBL:AE001911) (825 aa) fasta scores: E(): 1.1, 29.762% id FT in 168 aa, and to Neisseria meningitidis alanyl-tRNA FT synthetase Nmb1595 TR:Q9JYG6 (EMBL:AE002510) (874 aa) fasta FT scores: E(): 1.2, 27.273% id in 154 aa" FT /db_xref="UniProtKB/TrEMBL:Q7W0E9" FT /protein_id="CAE40568.1" FT /translation="MKIREKRGCFAAQEPQMFGFRRKDTQQYDQEAQDAFVERVAAAAR FT DFVAAVPAGAGLDYSPASIAALDAVLEQAHLGALALDPVQRVGAAAYLYEVARRRHGGL FT YEVCDDDDPVVLVTGEPEFDVCLCAIAKVERRIDAGPQEDLRPFFGRYEQAVAARRPDI FT IR" FT CDS 190779..193049 FT /transl_table=11 FT /locus_tag="BP0190" FT /product="probable orn/arg/lys decarboxylase" FT /EC_number="4.1.1.19" FT /note="Similar to Escherichia coli biodegradative arginine FT decarboxylase AdiA or Adi or B4117 SW:ADIA_ECOLI (P28629) FT (755 aa) fasta scores: E(): 4.9e-69, 38.070% id in 767 aa, FT and to Pseudomonas aeruginosa probable orn/arg/lys FT decarboxylase Pa1818 TR:Q9I2S7 (EMBL:AE004608) (751 aa) FT fasta scores: E(): 3.1e-150, 49.340% id in 758 aa" FT /db_xref="GOA:Q7W0E8" FT /db_xref="HSSP:1C4K" FT /db_xref="InterPro:IPR015422" FT /db_xref="UniProtKB/TrEMBL:Q7W0E8" FT /protein_id="CAE40569.1" FT /translation="MKFRFPIFIIDEDYRSENASGLGIRALASAIEAEGVEVIGVTSYG FT DLSSFAQQQSRASAFILSIDDEEFDVDSPEDVAGAIKNLRTFIGELRFRNADIPIYLYG FT ETRTSEHIPNDILRELHGFIHMFEDTPEFVARHIIREARSYVDGLPPPFFRELVKYAQD FT GSYSWHCPGHSGGVAFLKSPVGQMFHQFFGENMLRADVCNAVDELGQLLDHTGPVAESE FT LNAARIFHADHCFFVTNGTSTSNKVVWHANVAAGDVVVVDRNCHKSILHAITMTGAIPV FT FLRPTRNHLGIIGPIPLDEFDPENIRRKIEANPFAREALNKKPRILTLTQSTYDGVIYN FT VEMIKEKLGTYVDTLHFDEAWLPHAAFHEYYRDMHAIGPDRPRSQDAMVFATHSTHKLL FT AGISQASQIIVQESESRKLDRNLFNEAYLMHTSTSPQYAIIASCDVAAAMMEPPGGTAL FT VEESIREAMDFRRAMRKVASEFGKDDWWFKVWGPNRLAPEGIGHRDDWVLESGDHWHGF FT GDLAPGFNMLDPIKATIITPGLDMSGSFGESGIPAALVSKYLAEHGVVVEKTGLYSFFI FT LFTIGITKGRWNTLLTALQQFKDDYDRNQPLWRILPEFCRGHRRYERMGLRDLCQQIHE FT AYRERDVARLTTEMYLSDMVPALKPSDAFARMAHREVERVEIDQLEGRVTGVLLTPYPP FT GIPLLIPGERFNRTIVQYLQFAREFNERFPGFETYIHGLADEEGPDGAKRYYVDCLKDA FT GEQ" FT misc_feature 191223..193013 FT /note="HMMPfam hit to PF01276, Orn/Lys/Arg decarboxylase" FT misc_feature 191952..191996 FT /note="ScanRegExp hit to PS00703, Orn/Lys/Arg FT decarboxylases family 1 pyridoxal-P attachment site." FT CDS 193098..194330 FT /transl_table=11 FT /locus_tag="BP0191" FT /product="putative exported protein" FT /note="Similar to Rhizobium meliloti conserved hypothetical FT protein Smc00763 TR:CAC45279 (EMBL:AL591784) (394 aa) fasta FT scores: E(): 4.8e-59, 57.431% id in 397 aa, and to FT Haemophilus influenzae hypothetical protein Hi0933 FT SW:YHIN_HAEIN (P44941) (401 aa) fasta scores: E(): 5.7e-65, FT 44.444% id in 396 aa" FT /db_xref="InterPro:IPR004792" FT /db_xref="UniProtKB/TrEMBL:Q7W0E7" FT /protein_id="CAE40570.1" FT /translation="MSSREYPVSMFDVAVIGAGAAGMMCAAVAGQRGLRMVLIDHAAKL FT AEKIRISGGGRCNFTNLGAGPANFLSDNPHFCRSALAGYTPQDFLGLLRRHRVHWHEKH FT RGQLFCDDSSETIIEVLRAECGQGGVAWRMPCRVDEIARREGGGFTLRTSTGAIDARAV FT VVATGGMAIPQLGATDYALKVARQFGLKVVEPRPALVPLTFDPAQWQPFAALSGVALEV FT TLSTGQGKGRAAFLEDLLFTHRGLSGPAILQISSYWKPGEPIVLDLAPGRDLAAELIGA FT KPGNRQQLHTVLAGLWPRRLADTWLDVAGRAVGADLAAARLADVPDRTLRALAALIHDW FT RLVPSGTAGYKKAEVMRGGVDTRALDQKSMQARGVPGLYFIGEAVDVTGWLGGYNFQWA FT WASGYACGNAL" FT misc_feature 193098..193184 FT /note="Signal peptide predicted for BP0191 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.778) with cleavage site FT probability 0.686 between residues 29 and 30" FT misc_feature 193134..193187 FT /note="1 probable transmembrane helix predicted for BP0191 FT by TMHMM2.0 at aa 13-30" FT repeat_region 194327..194358 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 194327..195379 FT CDS 194429..195379 FT /transl_table=11 FT /locus_tag="BP0192" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE40571.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT misc_feature 194687..194752 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 194810..195343 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(195348..195379) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS 195482..196117 FT /transl_table=11 FT /gene="sodA" FT /locus_tag="BP0193" FT /product="superoxide dismutase [Mn]" FT /EC_number="1.15.1.1" FT /note="Previously sequenced as Bordetella pertussis FT superoxide dismutase [Mn] SodA SW:SODM_BORPE (P53642) (211 FT aa) fasta scores: E(): 1.1e-85, 100.000% id in 211 aa, and FT similar to Pseudomonas putida superoxide dismutase [Mn] FT SodA SW:SODM_PSEPU (P77929) (203 aa) fasta scores: E(): FT 1.4e-58, 73.399% id in 203 aa. Also similar to BP2761, FT 40.201% identity (41.885% ungapped) in 199 aa overlap." FT /db_xref="GOA:P53642" FT /db_xref="HSSP:1D5N" FT /db_xref="InterPro:IPR019831" FT /db_xref="UniProtKB/Swiss-Prot:P53642" FT /protein_id="CAE40572.1" FT /translation="MPYVLPALSYAYDALEPHIDARTMEIHHTRHHQTYVNGLNAALEG FT AGLDSEEPVEQLLRRIPALPPGIHGAVRNHGGGHANHSLLWTVMSPSGGGRPDGRLAAD FT IQAQLGGHDAFQAAFTQAALGRFGSGWAWLTVTPAGRLRVDSSANQDSPLMEGNTPILG FT LDVWEHAYYLQYQNRRPEYIEAFYRVVDWAEVARRYEIALAELGREAA" FT misc_feature 195485..196093 FT /note="HMMPfam hit to PF00081, Iron/manganese superoxide FT dismutases, alpha-hairpin domain" FT misc_feature 195974..195997 FT /note="ScanRegExp hit to PS00088, Manganese and iron FT superoxide dismutases signature. Confirmed by InterPro FT eMOTIF pattern match." FT CDS 196114..197007 FT /transl_table=11 FT /locus_tag="BP0194" FT /product="probable metal transporter" FT /note="Similar to Pseudomonas aeruginosa hypothetical FT protein Pa4467 TR:Q9HVV1 (EMBL:AE004860) (310 aa) fasta FT scores: E(): 2.5e-41, 54.864% id in 257 aa, and to FT Myxococcus xanthus GufA protein SW:GUFA_MYXXA (Q06916) (254 FT aa) fasta scores: E(): 2.1e-36, 49.412% id in 255 aa. Also FT similar to BP2140, 47.458% identity (47.782% ungapped) in FT 295 aa overlap." FT /db_xref="GOA:Q7W0E6" FT /db_xref="InterPro:IPR003689" FT /db_xref="UniProtKB/TrEMBL:Q7W0E6" FT /protein_id="CAE40573.1" FT /translation="MNTHSRHRVRPALTSVSAMTLAVLVACLACYQLWEFLDRRWPHVA FT LAMAGGMVAAGATALGAVPVLFSQTLSQRVQDCMFGFGAGVMLAASAFSLVVPGIAAAG FT AQGYGPWGAGILVGAAILLGGAVLLASDRLLPHEHFIKGKEGRASRTLRRTWLFVFAIM FT LHNVPEGLAIGVGYAGSDSLRGAALATGIAIQDVPEGLVVALALLAAGYSRAFSVALGM FT LSGLVEPLGAIVGAAVVGWSAAMLPWGLGFAAGAMLFVISHEIIPESHRKGHEVPATAG FT LMLGFVLMMLLDTALG" FT misc_feature 196114..196200 FT /note="Signal peptide predicted for BP0194 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.982) with cleavage site FT probability 0.671 between residues 29 and 30" FT misc_feature join(196150..196218,196246..196314,196351..196419, FT 196432..196500,196579..196647,196675..196743, FT 196762..196830,196843..196911,196930..196989) FT /note="9 probable transmembrane helices predicted for FT BP0194 by TMHMM2.0 at aa 13-35, 45-67, 80-102, 107-129, FT 156-178, 188-210, 217-239, 244-266 and 273-292" FT misc_feature 196162..196194 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 197402..198502 FT /transl_table=11 FT /gene="gcvT" FT /locus_tag="BP0195" FT /product="glycine cleavage system T protein" FT /EC_number="2.1.2.10" FT /note="Similar to Escherichia coli aminomethyltransferase FT GcvT or B2905 SW:GCST_ECOLI (P27248) (363 aa) fasta scores: FT E(): 5.7e-67, 53.406% id in 367 aa, and to Pseudomonas FT aeruginosa glycine-cleavage system protein T1 GcvT1 or FT Pa5215 TR:Q9HTX5 (EMBL:AE004934) (360 aa) fasta scores: FT E(): 1.6e-71, 59.280% id in 361 aa" FT /db_xref="GOA:Q7W0E5" FT /db_xref="InterPro:IPR006223" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0E5" FT /protein_id="CAE40574.1" FT /translation="MSAPLKRTPLAEEHLAAGACMVDFGGWDMPLAYGSQLEEHHAVRQ FT DAGMFDVSHMLNVDVGGADATAFLRRLVANDVARLATPGKALYSCMLNPQGGIIDDLII FT YYFAPDQWRVVVNAGTADKDIAWMQRVAAADGFDVVIAPRRDLAMVAVQGPNARAKVWA FT ARPAWQAASEPLAPFSAAAVEAGTLVARTGYTGEDGFEIVLPADAVVQLWRDLLAQGVR FT PCGLGARDTLRLEAGMNLYGQDMDELVHPDQAGLSWTVALKDEARRFVGRDAIEQFAVP FT RAFVGLKLQERGVMRAHMPVRCAQGMGELTSGTMSPTLGVSVGFARMPVGVQPGDAVEV FT EIRGKWVPALVCKLPFVRHGKAVEHS" FT misc_feature 197546..198478 FT /note="HMMPfam hit to PF01571, Glycine cleavage T-protein FT (aminomethyl transferase)" FT CDS 198584..198958 FT /transl_table=11 FT /gene="gcvH" FT /locus_tag="BP0196" FT /product="glycine cleavage system H protein" FT /note="Similar to Escherichia coli glycine cleavage system FT H protein GcvH or B2904 SW:GCSH_ECOLI (P23884) (128 aa) FT fasta scores: E(): 4e-20, 53.659% id in 123 aa, and to FT Pseudomonas aeruginosa glycine cleavage system protein H1 FT GcvH1 or Pa5214 TR:Q9HTX6 (EMBL:AE004934) (129 aa) fasta FT scores: E(): 1.3e-22, 56.198% id in 121 aa" FT /db_xref="GOA:Q7W0E4" FT /db_xref="HSSP:1HTP" FT /db_xref="InterPro:IPR017453" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0E4" FT /protein_id="CAE40575.1" FT /translation="MSLPTDRKYTESHEWVQAEGDVFVVGITDNAQEQLGDLVFVGDVK FT VGATLKAGETAGVVESVKAASDIYAPVDGEIVAFNDELEANPSLINESAYTAWIFKIKP FT ANAADLDKLLDAAGYQAVAG" FT misc_feature 198587..198955 FT /note="HMMPfam hit to PF01597, Glycine cleavage H-protein" FT CDS 199018..201882 FT /transl_table=11 FT /gene="gcvP" FT /locus_tag="BP0197" FT /product="glycine cleavage system P protein" FT /EC_number="1.4.4.2" FT /note="Similar to Escherichia coli glycine dehydrogenase FT [decarboxylating] GcvP or B2903 SW:GCSP_ECOLI (P33195) (956 FT aa) fasta scores: E(): 2.2e-207, 58.254% id in 951 aa, and FT to Pseudomonas aeruginosa glycine cleavage system protein FT P2 GcvP2 or Pa2445 TR:Q9I137 (EMBL:AE004672) (959 aa) fasta FT scores: E(): 0, 66.422% id in 953 aa" FT /db_xref="GOA:Q7W0E3" FT /db_xref="InterPro:IPR015421" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0E3" FT /protein_id="CAE40576.1" FT /translation="MSRAPDTHSDFIPRHIGPSDEDQATMLVAIGAASLDALIDEVVPP FT RIRSRAPLALPAARSETDVLQDLKRIAARNQIYRNYIGQGYYGTHTPNVVLRNVLENPA FT WYTAYTPYQPEISQGRLEALLNYQTMVADLTGLDISNASLLDEGTAAAEAMTLARRGSR FT SSSPVFFVSQHCHPQTLEVVRTRAEGLGIELVIGDESRGLPECFGVLLQYPHSLGGVAD FT YRELAQAAHAQGAVVACVTDLLALALIEPPGQWGADIAVGSAQRFGVPFGFGGPHAGFM FT ACRDAYKRNMPGRLVGVSKDAQGNPALRLALQTREQHIRREKATSNICTAQVLLAVMAG FT LYAVWHGPRGVRRIAERVQSLTGALRAALAGLGVKVANDTWFDTLSLETGAATPAILAA FT ADCARINLRQVDGARLAVSLDETVTLADLQALVNVFAAGLGKDEVALAPPQASLDGIPA FT AVRRQGPILSHPVFSSVQSETDMLRYLRKLADKDLALDRTMIPLGSCTMKLNATAEMIP FT ITWPEFALIHPFAPASQTPGYRELIEGLSAQLCEITGYDGISLQPNSGAQGEYAGLLAI FT RAYHQANGQPQRNVCLIPASAHGTNPASAQLAGMDVVVVASDANGNVDLADLRARIAQV FT GERLAALMITYPSTHGVFEEAVTEICDAVHEAGGQVYLDGANMNAMVGVAQPGKFGSDV FT SHLNLHKTFCIPHGGGGPGVGPVAVRAHLAPYLPGVLDARGRLDPEAKVGPVSAAPYGS FT AGILPIPYVYIALMGAEGLRRATEVAILNANYIATRLRGHYPVLYAGRNGRVAHECILD FT VRPLKETSGISAEDIAKRLMDYGFHAPTMSFPVAGTLMVEPTESEGLAELERFIEAMIA FT IRAEIAQVESGERDRDDNVLRNAPHTAQMLLAEEWHHDYPRQQAAYPVASLRENKYWPP FT VARVDNAYGDRNLVCACLPVEAYA" FT misc_feature 199054..200322 FT /note="HMMPfam hit to PF02347, Glycine cleavage system FT P-protein" FT CDS complement(202027..202767) FT /transl_table=11 FT /locus_tag="BP0198" FT /product="putative GntR-family transcriptional regulator" FT /note="Similar to Escherichia coli putative L-lactate FT dehydrogenase operon regulatory protein LldR or LctR or FT B3604 SW:LLDR_ECOLI (P33233) (258 aa) fasta scores: E(): FT 4.3e-12, 31.915% id in 235 aa, and to Streptomyces FT coelicolor putative GntR-family transcriptional regulator FT Scc24.13C TR:Q9L0A4 (EMBL:AL163003) (235 aa) fasta scores: FT E(): 4.3e-14, 34.222% id in 225 aa" FT /db_xref="GOA:Q7W0E2" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W0E2" FT /protein_id="CAE40577.1" FT /translation="MKTVETNPNPLGPIKAVRSRDLLADALREQILSGARPSGVALPSE FT RELTEETGLSRAAVRDALRVLESEGLIETRQGRYGGSVVKLPANDALARPVALFARARG FT ISLQEMIEARVAIEPTIAELAALRRTPEDLQALIQATDLLQEALPHVEQFLDLNVRWYF FT ALADACHNDLLRAFIVSIAGLILTATSREGQTPEPTRRLILQSHRRVVEAVIAGDAPAA FT RRRMERHVAGYQEHYERLGLTPSA" FT misc_feature complement(202516..202701) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT misc_feature complement(202576..202641) FT /note="Predicted helix-turn-helix motif with score 1063 FT (+2.81 SD) at aa 43-64, sequence PSERELTEETGLSRAAVRDALR" FT CDS 202837..204048 FT /transl_table=11 FT /locus_tag="BP0199" FT /product="conserved hypothetical protein" FT /note="Similar to Rhizobium meliloti putative conserved FT membrane-anchored protein Smb21182 TR:CAC49248 FT (EMBL:AL603645) (394 aa) fasta scores: E(): 2e-56, 40.769% FT id in 390 aa, and to Sphingomonas aromaticivorans FT hypothetical 41.0 kDa protein TR:O86014 (EMBL:AF079317) FT (388 aa) fasta scores: E(): 8.9e-55, 41.732% id in 381 aa" FT /db_xref="GOA:Q7W0E1" FT /db_xref="HSSP:1PQY" FT /db_xref="InterPro:IPR003673" FT /db_xref="UniProtKB/TrEMBL:Q7W0E1" FT /protein_id="CAE40578.1" FT /translation="MAAVSSSVPPTPLGGVRVLDLSKVLAGPLCTQYMADMGADVIKVE FT AAGQGDDTRGWPPFQDGQAAVFLSCNRNKRSIALDLKSAHGRAVVQRLAAWADVVVHSF FT GPGVAQKLGVDWEALSEINPRLVYCAISGFGPVGSLSHGKGFDVVLQAFCGMISITGET FT EGGAVRSPFSPVDQATGLHALIGILAALRQRDASGRGVTVDASLFDTALGFMGYFMQGY FT WARGTEPARAGAGHESLCPYQDFATADKPIILGIANDALWRAFCALAERPELASDPRFA FT TNAQRVANRAQTLAATRALLAARTRGEWLPALEQAGIPCSPIHTLVEVDAHPHTRESGM FT VFDYPETGTDAGPLKGVAQPVRFDGMRLTTPKRPPSLNQDWASVLADAGYSDPEVRDLL FT QQMA" FT misc_feature 203065..203631 FT /note="HMMPfam hit to PF02515, CAIB/BAIF family" FT CDS 204077..205045 FT /transl_table=11 FT /locus_tag="BP0200" FT /product="putative exported protein" FT /note="Similar to Pseudomonas putida and Pseudomonas sp FT hypothetical 34.5 kDa protein in clcB-clcD intergenic FT region precursor SW:YCLC_PSEPU (Q47100) (329 aa) fasta FT scores: E(): 1.3e-33, 36.246% id in 309 aa, and to FT Rhizobium meliloti conserved hypothetical protein Sma1927 FT TR:AAK65716 (EMBL:AE007292) (330 aa) fasta scores: E(): FT 1.8e-32, 34.663% id in 326 aa" FT /db_xref="GOA:Q7W0E0" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q7W0E0" FT /protein_id="CAE40579.1" FT /translation="MMNVLIRRALCAAIASLAAAAAHAAYPEQPVRIVVAFAPGSGTDN FT VARYYATRLSEELKQPFVVENKPGANGSIAATQVARTQPDGYTLFLGSNSTLSAAPFLF FT KKLPYEPLKDFTAVARLSDIPSMLVVGADSPIRDFDQFIGKARAEPGRVTWANANTAHL FT AAGMALTKQAQLDMISVPYKSSPQALTDVIGGQVTAMVVDTSAGTAFVQQGKVRALAVT FT TARPVAAMPGVPSMSERFPGIDVYSWLGIVGPAGMPDEVVTVVNKAILKINASEDTVRF FT LRENAGAEPPPSSSPAEFTQFMHAQLEVWRKLLRDANVEPM" FT misc_feature 204077..204148 FT /note="Signal peptide predicted for BP0200 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.998 between residues 24 and 25" FT CDS 205042..205560 FT /pseudo FT /transl_table=11 FT /locus_tag="BP0201" FT /product="probable enoyl-CoA hydratase (Pseudogene)" FT /EC_number="4.2.1.17" FT /note="Pseudogene. This CDS is disrupted by the insertion FT of IS481 element. Similar to Escherichia coli probable FT enoyl-CoA hydratase PaaG or B1394 SW:PAAG_ECOLI (P77467) FT (262 aa) fasta scores: E(): 4.4e-14, 35.443% id in 158 aa, FT and to Azoarcus evansii putative enoyl-CoA hydratase PacA FT or PaaG TR:Q9ETY7 (EMBL:AJ278756) (273 aa) fasta scores: FT E(): 5.3e-14, 41.615% id in 161 aa" FT /db_xref="PSEUDO:CAE40580.1" FT misc_feature 205120..205557 FT /note="HMMPfam hit to PF00378, Enoyl-CoA FT hydratase/isomerase family" FT misc_feature 205381..205443 FT /note="ScanRegExp hit to PS00166, Enoyl-CoA FT hydratase/isomerase signature. Confirmed by InterPro eMOTIF FT pattern match." FT misc_feature join(205381..205449,205477..205545) FT /note="2 probable transmembrane helices predicted for FT BP0201 by TMHMM2.0 at aa 114-136 and 146-168" FT repeat_region 205557..205588 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 205557..206609 FT CDS 205659..206609 FT /transl_table=11 FT /locus_tag="BP0202" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q84CT8" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q84CT8" FT /protein_id="CAE40581.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT misc_feature 205917..205982 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 206040..206573 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(206578..206609) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(206604..206642) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0202A" FT /product="transposase (pseudogene)" FT /note="transposase fragment for IS1002" FT repeat_region complement(206604..206732) FT /note="Fragment of a IS1002 element" FT repeat_region 206704..206732 FT /note="Inverted repeat for IS481-like element" FT repeat_region complement(206707..206732) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(206729..207679) FT /transl_table=11 FT /locus_tag="BP0203" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTA3" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTA3" FT /protein_id="CAE40583.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS" FT repeat_region 206729..206760 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(206729..207781) FT misc_feature complement(206765..207298) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(207356..207421) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(207750..207781) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(207794..208795) FT /transl_table=11 FT /locus_tag="BP0204" FT /product="putative restriction endonuclease" FT /note="Similar to Escherichia coli EcoVIII restriction FT endonuclease TR:Q46974 (EMBL:U48806) (333 aa) fasta scores: FT E(): 9.4e-22, 34.677% id in 248 aa, and to Haemophilus FT influenzae type II restriction enzyme HindIII or Hi1393 FT SW:T2D3_HAEIN (P43870) (300 aa) fasta scores: E(): 7.4e-20, FT 30.420% id in 286 aa" FT /db_xref="GOA:Q7W0D9" FT /db_xref="InterPro:IPR019043" FT /db_xref="UniProtKB/TrEMBL:Q7W0D9" FT /protein_id="CAE40584.1" FT /translation="MPVARHGVGERVVQCPPMLTTSDPLPHPLPHPLLHDGVVAAVVRL FT CADATLDFPARCARLEAAIRACTRDQIIEHLQHGGVISECIGHDSSEEKLLAKYSDVLL FT ACALGELGFQARVLAERSDAADVYAECGDQRIVGDGKIFRLSRTALNPKDYKVPSLKKW FT RQGAGYSADYSVLLAPSFQYPLSRSQLYAQAIDNNVLLLSFEQLAFLVRHHQPGRDYRP FT LWEYAGTRAGQDTAAWKEARQYWHGLNQLVARLAGQTEQALRDSYAARRQLLQRQFDDE FT IAHWDAEAQRIRGLSREQAIAELLVSKKIQARVDLMRGAQRQLTLQLDDARA" FT CDS complement(208886..209452) FT /transl_table=11 FT /locus_tag="BP0205" FT /product="putative exported protein" FT /note="Similar to the C-terminal regions of Thermus FT thermophilus nusA/infB operon DNA TR:Q56428 (EMBL:Z48001) FT (275 aa) fasta scores: E(): 0.00019, 39.583% id in 96 aa, FT and to Pseudomonas aeruginosa hypothetical protein Pa4718 FT TR:Q9HV80 (EMBL:AE004885) (158 aa) fasta scores: E(): FT 0.00051, 33.962% id in 106 aa" FT /db_xref="UniProtKB/TrEMBL:Q7W0D8" FT /protein_id="CAE40585.1" FT /translation="MQLTIRKLAYTLAFSTLVLAGCTTASKKTDGQAATPADQASSQQA FT SAASVEFYVAQAKAGDGLMEVKVPDGSLYMQRQPVLTRADLTEAAALVDRQGQNFVGLR FT FTEAGARKLNDISSKNIGNMLALVIDRELVAAPRIAEPLNRGVLAFGVPSAKAASEIAA FT KIRGDAGAPAAGVPAAPAPKPAPKP" FT misc_feature complement(209372..209452) FT /note="Signal peptide predicted for BP0205 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.994) with cleavage site FT probability 0.482 between residues 27 and 28" FT misc_feature complement(209387..209419) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site." FT CDS 209771..211684 FT /transl_table=11 FT /gene="thiC" FT /locus_tag="BP0206" FT /product="thiamine biosynthesis protein" FT /note="Similar to Escherichia coli thiamine biosynthesis FT protein ThiC or B3994 SW:THIC_ECOLI (P30136) (631 aa) fasta FT scores: E(): 2.3e-150, 68.780% id in 631 aa, and to FT Neisseria meningitidis thiamine biosynthesis protein ThiC FT or Nmb2040 TR:Q9JXI0 (EMBL:AE002554) (633 aa) fasta scores: FT E(): 2.9e-180, 71.429% id in 630 aa" FT /db_xref="GOA:Q7W0D7" FT /db_xref="InterPro:IPR002817" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0D7" FT /protein_id="CAE40586.1" FT /translation="MNANPTFLAATAEVDAAAVAPLPKSRKVYETGSRPDIRVPFREIE FT QADTPTMFGGEKNPPLTVYDTSGPYTDPQASIDIRRGLPALRRAWIEERGDTEVLDGPT FT SDYGKERLTDPKLTAMRFDLQRPPRRARAGANVTQMHYARRGIVTPEMEFIALRENLRR FT EHYLETLRASGPDGEKLAKRLLRQHPGQSFGAALPSAITPEFVREEVARGRAIIPANIN FT HPEIEPMIIGRNFLVKINANIGNSAVSSGIGEEVEKMTWAIRWGGDTVMDLSTGKHIHE FT TREWIIRNSPVPIGTVPIYQALEKVDGKAEELTWEIFRDTLIEQAEQGVDYFTIHAGVR FT LPFIPMTADRMTGIVSRGGSIMAKWCLAHHKESFLYERFEEICEIMKAYDVSFSLGDGL FT RPGSGYDANDEAQFAELKTLGELTQVAWKHDVQVMIEGPGHVPMQMIKENMELQLKHCD FT EAPFYTLGPLTTDIAPGYDHITSGIGAALIGWYGTAMLCYVTPKEHLGLPNKKDVKDGI FT ITYKIAAHAADLAKGHPGAAIRDNALSKARFEFRWDDQFNLGLDPDTAKEFHDETLPKD FT SMKVAHFCSMCGPHFCSMKITQDVRDYAAAQGVSEKDALQQGMQEKAVEFVKKGAEVYH FT RT" FT misc_feature 210182..211573 FT /note="HMMPfam hit to PF01964, ThiC family" FT CDS complement(211726..213156) FT /transl_table=11 FT /locus_tag="BP0207" FT /product="putative aldehyde dehydrogenase" FT /note="Similar to Rhizobium meliloti putative aldehyde FT dehydrogenase Smb20891 TR:CAC49585 (EMBL:AL603646) (477 aa) FT fasta scores: E(): 5.1e-123, 68.697% id in 476 aa, and to FT Rhizobium loti aldehyde dehydrogenase Mlr5236 TR:Q98CA3 FT (EMBL:AP003006) (479 aa) fasta scores: E(): 1.8e-118, FT 67.230% id in 473 aa. Similar to several B. pertussis CDSs FT including BP0360 (44.025% identity in 477 aa overlap), FT BP2303, BP0757, BP1976." FT /db_xref="GOA:Q7W0D6" FT /db_xref="HSSP:1BXS" FT /db_xref="InterPro:IPR016163" FT /db_xref="UniProtKB/TrEMBL:Q7W0D6" FT /protein_id="CAE40587.1" FT /translation="MHANFIDGAWLDGVDARPNINPSNLADVVGDYAQADAAQAGMAIA FT AASAAAHAWARSTGQRRADVLDAVGTELLARKEELGRLLSREEGKTLPEGVSEVTRAGH FT IFKFFAGEALRIQGEKLPMTRPGIEVDVTREPVGVVGIIAPWNFPIAIPAWKIAPALAY FT GNTVVFKPADLVPGSAWALAEILSRAGLPAGVFNLVMGRGSVVGQAILDDRRVNAISFT FT GSVATGRRVAEAAIGRMAKVQLEMGGKNPLVVLNDADLKVAVDCAVNGAFFSTGQRCTA FT SSRLIVQKGIYPRFVEAVRERLQGLKVDDALAPGTDIGPVVDRSQFDQNLAYIAIGREE FT GAQLAWGGEPLKRANEGYYLAPALFVDCDNSLRIAREEIFGPVAAVIPVDSYEQALEVA FT NDTEFGLSSGIVTTSLRHATHFKRESQAGMVMVNCPTAGVDYHVPFGGRKGSSYGPREQ FT GRHAAEFYTSVKTAYTAA" FT misc_feature complement(211729..213132) FT /note="HMMPfam hit to PF00171, Aldehyde dehydrogenase FT family" FT misc_feature complement(212308..212343) FT /note="ScanRegExp hit to PS00070, Aldehyde dehydrogenases FT cysteine active site. Confirmed by InterPro eMOTIF pattern FT match." FT misc_feature complement(212404..212427) FT /note="ScanRegExp hit to PS00687, Aldehyde dehydrogenases FT glutamic acid active site." FT CDS complement(213269..214681) FT /transl_table=11 FT /locus_tag="BP0208" FT /product="putative oxidoreductase" FT /note="Similar to Rhizobium loti putative oxidoreductase FT Mlr7440 TR:Q986B0 (EMBL:AP003011) (476 aa) fasta scores: FT E(): 8.5e-78, 46.970% id in 462 aa, and to Rhizobium FT meliloti putative oxidoreductase protein Smc00985 FT TR:CAC45439 (EMBL:AL591785) (496 aa) fasta scores: E(): FT 1.5e-76, 44.255% id in 470 aa. Also similar to BP3139, FT 49.785% identity in 466 aa overlap." FT /db_xref="GOA:Q7W0D5" FT /db_xref="InterPro:IPR006094" FT /db_xref="UniProtKB/TrEMBL:Q7W0D5" FT /protein_id="CAE40588.1" FT /translation="MSASEFSQRLTQALGADVVATSPADIEPWLSDWRGIYRGQAQAVV FT RPRTTDEVARCLALCQQAGVPVVPRGGNTGLCGGATPDAAQANVVLSLERMNAIRALDT FT VANTMVAEAGCILGNLRRAAQDANRLLPLSLAAEDSSQIGGNVATNAGGVNVVRYGMAR FT ELVLGLEAVLPNGEVLHGLRTLRKDNTGYDLKQLLIGSEGTLGVITAVALRLFPRADTR FT TVVLAAVESPRQALQLYELLFEQCGARLQAFEYFSGDCLDLVLTHVDGLHEPFAQRYPA FT YVLVELADTIDEAALNALVEEVIGAALERELCLDAAVSASLAQLQTLWRLREEISEAQR FT ADGPHLKHDVSLPIERIPEFMETAAARVRERYPDIRPFIFGHFGDGNLHYNLSRPAGAP FT REWAAEQGDAVTDLVLDEVLRYGGSISAEHGIGQLKRDHFLHSKDPLELRLMREIKRVL FT DPAGIMNPGKLL" FT misc_feature complement(214052..214660) FT /note="HMMPfam hit to PF01565, FAD binding domain" FT misc_feature complement(214385..214414) FT /note="ScanRegExp hit to PS00339, Aminoacyl-transfer RNA FT synthetases class-II signature 2." FT CDS complement(214698..215393) FT /transl_table=11 FT /locus_tag="BP0209" FT /product="putative GntR-family transcriptional regulator" FT /note="Similar to Rhizobium meliloti putative GntR-family FT transcriptional regulator Sma0246 TR:AAK64788 FT (EMBL:AE007207) (233 aa) fasta scores: E(): 4e-20, 36.771% FT id in 223 aa, and to Rhizobium loti transcriptional FT regulator Mll8575 TR:Q982M5 (EMBL:AP003014) (247 aa) fasta FT scores: E(): 5.4e-19, 36.123% id in 227 aa" FT /db_xref="GOA:Q7W0D4" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q7W0D4" FT /protein_id="CAE40589.1" FT /translation="MLQPTPTLTDQVAGQLARAIADGAYAVGAKLPTGRALAQQYGVSA FT AVIREATERLRAQGLVQSRQGSGCTVVARTPAGGFQVPAGGLDRAHLARVYELRMELEG FT GAAALAARRRGAADLDRMRQALQALQREPIEPEQGVVHDVGFHVAIATATANPYYLQLL FT QYLNLQLRQAVETARANTRRQGDPVHAVHEEHLAIYRAIERGEPEAARAAAQHHLLGAA FT ARLQLDMNL" FT misc_feature complement(215181..215360) FT /note="HMMPfam hit to PF00392, Bacterial regulatory FT proteins, gntR family" FT repeat_region 215510..215541 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 215510..216562 FT CDS 215612..216562 FT /transl_table=11 FT /locus_tag="BP0210" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTJ9" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTJ9" FT /protein_id="CAE40590.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVSEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS" FT misc_feature 215870..215935 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 215993..216526 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(216535..216562) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 216559..216590 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region 216559..217611 FT CDS 216661..217611 FT /transl_table=11 FT /locus_tag="BP0211" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q7TTC0" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q7TTC0" FT /protein_id="CAE40591.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN" FT misc_feature 216919..216984 FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT misc_feature 217042..217575 FT /note="HMMPfam hit to PF00665, Integrase core domain" FT repeat_region complement(217580..217611) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(217636..218535) FT /transl_table=11 FT /locus_tag="BP0212" FT /product="putative hydrolase" FT /note="Similar to Staphylococcus cohnii streptogramin B FT lactonase VgbB TR:O87275 (EMBL:AF015628) (295 aa) fasta FT scores: E(): 1.4e-42, 41.637% id in 281 aa, and to FT Streptomyces coelicolor putative hydrolase Scd6.27C FT TR:Q9KZX7 (EMBL:AL353815) (299 aa) fasta scores: E(): FT 3.6e-47, 46.875% id in 288 aa" FT /db_xref="GOA:Q7W0D3" FT /db_xref="InterPro:IPR011217" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0D3" FT /protein_id="CAE40592.1" FT /translation="MNQVEMTEFPVGKPEEALYGVASTPDGALWFTLAKGNAIGRLSPD FT GEVSRFPLPHADGQPTTITCGPDGRPWFTLSSANAVGRLSPDGALRMFELPRPASRPFG FT IAAGHDGCLWFAEMAGDRIGRITIDGDIEEYDLPVKGGYPSCMAAGRDGLMWFTLNQAG FT AIGSISATAAPRIFPLGAADAAPVGIASDAQGALWIAQAGNGAIARFDAGGRITEFPLH FT SRAARPHALAADAAGNLWFTEWGANRIGRISEAGDTAGYELAAPGSEPHGIAIDPHGCV FT WAALETGSLVRLQASPRD" FT CDS 218690..219238 FT /transl_table=11 FT /locus_tag="BP0213" FT /product="putative acetyltransferase" FT /note="Similar to Alcaligenes faecalis phosphinothricin FT N-acetyltransferase Pat SW:PAT_ALCFA (P31668) (197 aa) FT fasta scores: E(): 1.4e-35, 59.884% id in 172 aa, and to FT Caulobacter crescentus phosphinothricin N-acetyltransferase FT Cc0935 TR:Q9A9P1 (EMBL:AE005770) (180 aa) fasta scores: FT E(): 3.6e-32, 53.757% id in 173 aa" FT /db_xref="GOA:Q7W0D2" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:Q7W0D2" FT /protein_id="CAE40593.1" FT /translation="MTASTPTAILIRDSRDADLPAIAAIYAHHVLHGTASFELEPPGLE FT ALRERRAAVLAHGLPYLAAECGGEIVGYAYATPYRPRPAYRHTVEDSVYVRAGHAGQGI FT GGKLLAALIDRCAAGGWRQMLAVVGDSANTASVALHARHGFDTIGTFRSVGYKHGQWRD FT TVLMQRALGEGDATPPSRP" FT misc_feature 218873..219127 FT /note="HMMPfam hit to PF00583, Acetyltransferase (GNAT) FT family" FT CDS complement(219277..219996) FT /transl_table=11 FT /locus_tag="BP0214" FT /product="Conserved hypothetical protein" FT /note="Similar to Caulobacter crescentus ExsB protein FT Cc3160 TR:Q9A3P2 (EMBL:AE005980) (242 aa) fasta scores: FT E(): 2.7e-64, 63.983% id in 236 aa, and to Rhizobium loti FT Mll5936 protein TR:Q98AM3 (EMBL:AP003007) (245 aa) fasta FT scores: E(): 8.9e-59, 60.606% id in 231 aa" FT /db_xref="GOA:Q7W0D1" FT /db_xref="InterPro:IPR018317" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0D1" FT /protein_id="CAE40594.1" FT /translation="MQNHQRRALVLFSGGQDSTTCLAWALERYAHVETLGFDYGQRHRV FT ELDARQVVLRELRANFPDWAQRLGDDHLLDLGILAQVGDTAMTSDREIEMQANGLPNTF FT VPGRNLLFLTLAAALGYRRQLDVLVGGMCETDFSGYPDCRDDTIKSQQVTLGLGLGTRV FT TIETPLMWLDKAQTWELADRLGGQALVDMVIEHSHTCYLGERGQRHDWGYGCGHCPACA FT LRKNGWERWVAGAAHAD" FT CDS 220068..223010 FT /transl_table=11 FT /gene="ppc" FT /locus_tag="BP0215" FT /product="phosphoenolpyruvate carboxylase" FT /EC_number="4.1.1.31" FT /note="Similar to Corynebacterium crenatum FT phosphoenolpyruvate carboxylase Ppc TR:AAK92540 FT (EMBL:AF406314) (919 aa) fasta scores: E(): 1.2e-95, FT 41.587% id in 945 aa, and to Corynebacterium glutamicum FT phosphoenolpyruvate carboxylase Ppc SW:CAPP_CORGL (P12880) FT (918 aa) fasta scores: E(): 5.4e-95, 41.288% id in 947 aa" FT /db_xref="GOA:Q7W0D0" FT /db_xref="InterPro:IPR015813" FT /db_xref="UniProtKB/Swiss-Prot:Q7W0D0" FT /protein_id="CAE40595.1" FT /translation="MAAYNAPVSNCQFRLTHILPIPQRHGAPTDPFQMNAIRQQSDSAE FT PLRHDIRLLGRCLGEVIQACEGKRVYDTIETLRRTAVRFRRAGDPADDKLLQARVKQLR FT GNDPNSVARAFSYFLHLSNIAEDRDQNRRQRERALAGAGPERGSLRQAIESLKAQGVNN FT ARIRRLLSEACVMPVLTAHPTEVQRKSTLDVHREISSLLVQRERELTADELSELDLALI FT GQVATLWQTRMLRYTRLTVADEIENALSYYRSTFLNVIPRVYGDLARLLNREPVKPFTP FT PPPPLEPFLRMGSWIGGDRDGNPNVDAATLERALLRQATVLFEHYLQEVHALGAELSAS FT TLLIEADPALLALADAGGDDSPHRRDEPYRRALIGIYARLAATARHLTGQKLARRATVP FT AAPYDTPDALAADLAVIAASLSARHGAPIARLRLSGLQQAVTVFGFHLATVDLRQSSDV FT HERVLAELFARAGDGIDGQAVDYLALDEAARVAGRELAHARPLASPWIAYSEETASELA FT VLRAAAAGRARYGRQAVLQSIVSHTETLSDLLEVLVLQKEAGLIAPPGETIAPGDGLMV FT VPLFETIPDLQRGPEIMAAWLDLPEVRQRVRLAQGDTQEVMLGYSDSNKDGGFLTSNWS FT LYQAERALVDVFSARSVRLRMFHGRGDSVGRGGGSSYDAILAQPPGTVAGQLRLTEQGE FT VIQSKYKDAEVGRWHLELLVAATLESSLAPQAAATSAEDAHMQQHAPAMSFMSELAQRT FT YRGLVYDTPGFADYFFAATPISEIAGLNIGSRPASRKKGQHIEDLRAIPWGFSWAQCRL FT MLTGWYGMGSAIEAYLETGAQGAPRSRRARLAQLREMASDWPAFRTLLSNMEMVLAKSD FT LAIAAGYAQLVPRRGLRERVFGAITAEHGRTLAMLRLLTRRDLLADNPGLMASLRERFA FT YIDPLNYLQIELIKRHRAAQRRAGDDADIRVPRAIHLTINGIAAGLRNSG" FT misc_feature 220398..220985 FT /note="HMMPfam hit to PF00311, Phosphoenolpyruvate FT carboxylase" FT misc_feature 220599..220634 FT /note="ScanRegExp hit to PS00781, Phosphoenolpyruvate FT carboxylase active site 1. Confirmed by InterPro eMOTIF FT pattern match." FT misc_feature 221679..222908 FT /note="HMMPfam hit to PF00311, Phosphoenolpyruvate FT carboxylase" FT misc_feature 221913..221951 FT /note="ScanRegExp hit to PS00393, Phosphoenolpyruvate FT carboxylase active site 2. Confirmed by InterPro eMOTIF FT pattern match." FT CDS 223601..226399 FT /transl_table=11 FT /gene="sphB1" FT /locus_tag="BP0216" FT /product="autotransporter subtilisin-like protease" FT /note="Previously sequenced as Bordetella pertussis FT autotransporter subtilisin-like protease SphB1 TR:CAC44081 FT (EMBL:AJ318229) (1039 aa) fasta scores: E(): 0, 100.000% id FT in 932 aa, and dimilar to Xylella fastidiosa serine FT protease Xf1026 TR:Q9PEK2 (EMBL:AE003939) (905 aa) fasta FT scores: E(): 1.1e-45, 31.919% id in 943 aa" FT /db_xref="GOA:Q7W0C9" FT /db_xref="HSSP:1MPT" FT /db_xref="InterPro:IPR000209" FT /db_xref="UniProtKB/TrEMBL:Q7W0C9" FT /protein_id="CAE40596.1" FT /translation="MMPPPAVPPQLPEVPAADLPRVRAPLSTYRRPQRTDFVTPTGGPF FT FAKQDKALNTIDLKMAHDLKLRGYRVKVAVVDEGVRSDHPLLNVEKKYGGDYMADGTRT FT YPDPKRQGRHGTSVALVLAGQDTDTYRGGVAPNADLYSANIGTRAGHVSDEAAFHAWND FT LLGHGIKIFNNSFATEGPEGEQRVKEDRNEYHSAANKQNTYIGRLDRLVRDGALLIFAA FT GNGRPSGRAYSEVGSVGRTPRVEPHLQRGLIVVTAVDENGRLETWANRCGQAQQWCLAA FT PSTAYLPGLDKDNPDSIHVEQGTSLSAPLVTGAAVLVQDRFRWMDNDNLRTTLLTTAQD FT KGPYGVDPQYGWGVLDVGRAVQGPAQFAFGDFVARVTDTSTFGNDISGAGGLVVDGPGA FT LVLAGSNTYAGRTTIKRGTLDVFGSVTSAVTVEPGGTLTGIGTVGTVTNQGTVVNKEAG FT LHVKGDYSQTAQGLLVTDIGSLLDVSGRASLAGRLHVDDIRPGYVGGDGKSVPVIKAGA FT VSGVFATLTRSPGLLLNARLDYRPQAVYLTMRRAERVHAAAQRGADDGRRASVLAVAER FT LDAAMRELDALPESQRDAAAPAAAIGRIQRVQSRKVLQDNLYSLAGATYANAAAVNTLE FT QNRWMDRLENHLAQAGGERVAAIAEYRHGQLRWRPDGLQGRQRGNGIMLGLAREVSAGL FT SLAAALTHSRTHWDESSGAPARDNAAMTTPGVLLGARRAWEDGWFVQGALGYSRYRNQA FT TRHISLGDAGHTVGATARGHVWQADAGLGRQWTLAPGHTLAPRAGLQLTHLRQQGFSES FT GAQGLGLRAHALTRTVPTLWAQLQSRHAFMLGATPMTAQLQLGVWHDLRARRYAASGGF FT AGLAQDQGASGYWPVPRTRVQGALGLRAEFAPGLVLGLGYTGQLATHWVDHQLSASLTY FT RY" FT misc_feature 223811..224023 FT /note="HMMPfam hit to PF00082, Subtilase family" FT misc_feature 224507..224539 FT /note="ScanRegExp hit to PS00138, Serine proteases, FT subtilase family, serine active site." FT misc_feature 224507..224686 FT /note="HMMPfam hit to PF00082, Subtilase family" FT misc_feature 225626..225682 FT /note="ScanRegExp hit to PS00095, C-5 cytosine-specific DNA FT methylases C-terminal signature." FT CDS 226857..227789 FT /transl_table=11 FT /locus_tag="BP0217" FT /product="3-hydroxybutyryl-CoA dehydrogenase" FT /EC_number="1.1.1.157" FT /note="Similar to Clostridium acetobutylicum FT 3-hydroxybutyryl-CoA dehydrogenase Hbd or Cac2708 FT SW:HBD_CLOAB (P52041) (282 aa) fasta scores: E(): 7.6e-33, FT 42.199% id in 282 aa, and to Rhizobium loti FT 3-hydroxybutyryl-CoA dehydrogenase Mlr6793 TR:Q988C8 FT (EMBL:AP003010) (309 aa) fasta scores: E(): 3.7e-37, FT 36.452% id in 310 aa" FT /db_xref="GOA:Q7W0C8" FT /db_xref="HSSP:1F17" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7W0C8" FT /protein_id="CAE40597.1" FT /translation="MDNPIQNLAVVGAGAMGSGIAALFASKGFDVVLIDPMEGALTRAA FT QVIERQLGVYAPDAIAPAMQRIRMDAGLEAACSAQLVIEAVPEKLALKRDIFARLDTLC FT DPQAIFATNTSGLSINDIAQAVTRRDRFVGTHFFTPADVIPLVEVVRNDDTSEQTVARV FT MDMLRAGGKRPVLVRKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIR FT LALSGPLEQRDMNGIDVHYAIASYLYQDLENRTTPSELLENKVQAGELGAKSGQGFYAW FT PPERRERVLRDKSAALAELAAWLENRKPV" FT misc_feature 226878..227699 FT /note="HMMPfam hit to PF00725, 3-hydroxyacyl-CoA FT dehydrogenase, C-terminal domain" FT CDS 227901..229250 FT /transl_table=11 FT /locus_tag="BP0218" FT /product="short-chain fatty acids transporter" FT /note="Similar to Escherichia coli short-chain fatty acids FT transporter AtoE or B2223 SW:ATOE_ECOLI (P76460) (440 aa) FT fasta scores: E(): 1.4e-62, 39.636% id in 439 aa, and to FT Alcaligenes eutrophus hypothetical 47.8 kDa protein FT TR:Q9F189 (EMBL:AF042280) (446 aa) fasta scores: E(): FT 1.5e-125, 75.281% id in 445 aa. Also similar to BP0404, FT 44.988% identity (46.283% ungapped) in 429 aa overlap." FT /db_xref="GOA:Q7W0C7" FT /db_xref="InterPro:IPR006160" FT /db_xref="UniProtKB/TrEMBL:Q7W0C7" FT /protein_id="CAE40598.1" FT /translation="MNKLTSFFTELMRKYLPDPFVFAIALTLLTVLMAFGIEGQPLDQI FT TREWGKGFWSLLAFTTQMAVILAMGYVLATAPLTDRLLDRIVSHVHQPRTAIIVATLVG FT GVGSYLNWGFGLVIGGVVAKKLALKVKGVHYPLIIAAAYSGFTMYGLGLSASIPVLVTT FT PGHPTADQMGVIPLSETIFSLPMLITSLVIIVTLPLLNAWLHPKQGEQVVEVDPAIDQS FT SAPAKTADELTAEDTLASRLNNSRILSLLIGLLGIAYVVFYFMDGKSLDLNLINFIILF FT LGIILLGTPAAYVAKLNEGIKTISGIILQYPFYAGIMAIMAIMAGSGLVATISKVFVDV FT ASPGSLPFWGLISSFVINFFAPSAGGHWVIQGPFMIDAAKEIGSALNQTTMAVMLGNAW FT NDLVQPFWILPALALSKLKLRDVMGYTVIMMLWVGVIHIAAVLAWGYLTH" FT misc_feature 227901..228008 FT /note="Signal peptide predicted for BP0218 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.941) with cleavage site FT probability 0.635 between residues 36 and 37" FT misc_feature 227901..229232 FT /note="HMMPfam hit to PF02667, Short chain fatty acid FT transporter" FT misc_feature join(227958..228017,228054..228122,228186..228254, FT 228315..228383,228441..228509,228639..228695, FT 228723..228782,228831..228899,228942..229010, FT 229173..229241) FT /note="10 probable transmembrane helices predicted for FT BP0218 by TMHMM2.0 at aa 20-39, 52-74, 96-118, 139-161, FT 181-203, 247-265, 275-294, 311-333, 348-370 and 425-447" FT CDS 229282..230007 FT /transl_table=11 FT /locus_tag="BP0219" FT /product="probable short-chain dehydrogenase" FT /note="Similar to Pseudomonas aeruginosa probable FT short-chain dehydrogenase Pa4162 TR:Q9HWL9 (EMBL:AE004832) FT (238 aa) fasta scores: E(): 3.1e-29, 45.887% id in 231 aa, FT and to Streptomyces coelicolor putative short chain FT oxidoreductase 2 Scg61.28C TR:Q9K3Y7 (EMBL:AL359949) (253 FT aa) fasta scores: E(): 1.8e-20, 42.324% id in 241 aa. FT Similar to BP3244 (49.153% identity in 236 aa overlap) and FT to BP1222 (44.726% identity in 237 aa overlap" FT /db_xref="GOA:Q7W0C6" FT /db_xref="HSSP:1GEG" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7W0C6" FT /protein_id="CAE40599.1" FT /translation="MKPTAYLVTGASSGISAAIARALLDAGHRVVNIDYRLPADAPQGL FT ASYQADLTDEAQTLAVAREVTEAYDIVGLVNNAGATRPGTADTATLADLDYVVALHLRT FT AMILVQAALPAMRAAGYGRIVNMSSRAALGKPERVVYSATKAGLIGLTRTLAMELGGDG FT ITVNAIGPGPIATELFRNSNPEGAPRTQRIIDSIVVKRLGTPEDVARAAMFFLSPDNGF FT VTGQVLYVCGGTTLGVAPV" FT misc_feature 229282..229341 FT /note="Signal peptide predicted for BP0219 by SignalP 2.0 FT HMM (Signal peptide probabilty 0.931) with cleavage site FT probability 0.543 between residues 20 and 21" FT misc_feature 229291..229812 FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT misc_feature 229663..229749 FT /note="ScanRegExp hit to PS00061, Short-chain FT dehydrogenases/reductases family signature." FT misc_feature 229879..229971 FT /note="HMMPfam hit to PF00678," FT CDS complement(230058..230909) FT /transl_table=11 FT /locus_tag="BP0220" FT /product="probable transcriptional regulator" FT /note="Similar to Rhodococcus opacus PcaR TR:O67983 FT (EMBL:AF003947) (265 aa) fasta scores: E(): 1.2e-41, FT 50.602% id in 249 aa, and to Rhizobium meliloti putative FT transcriptional regulator, IclR family protein Smb20586 FT TR:CAC49898 (EMBL:AL603647) (251 aa) fasta scores: E(): FT 2.2e-39, 48.780% id in 246 aa" FT /db_xref="GOA:Q7W0C5" FT /db_xref="InterPro:IPR005471" FT /db_xref="UniProtKB/TrEMBL:Q7W0C5" FT /protein_id="CAE40600.1" FT /translation="MASRLYNGARSERLHFHLLHTGSMVEQVPQQPGVSYVQSFARGLS FT VIRAFGPQRPQMTLSEVAAATGLTRAGARRILLTLASLGYVAQEDRRFTLTPRILELGY FT AYLSATPLWDLALPYMEEVAETTRESCSVSVLDGVDIVYILRLSTHKVMTINLAVGSRL FT PAWVTSMGRVLLAGLPEAEQDRLLDESQIQPYTPATVVDRAELKRILAGVRADGYACVV FT QELEPGLQSVAVPIVDRGGRVIGAMNVSGHANRYSREEMLQAFLPPLRSAAEHINQALR FT RR" FT misc_feature complement(230073..230633) FT /note="HMMPfam hit to PF01614, Bacterial transcriptional FT regulator" FT misc_feature complement(230676..230741) FT /note="Predicted helix-turn-helix motif with score 1256 FT (+3.46 SD) at aa 57-78, sequence MTLSEVAAATGLTRAGARRILL" FT CDS 231039..231725 FT /transl_table=11 FT /gene="catI" FT /gene_synonym="pcaI" FT /locus_tag="BP0221" FT /product="3-oxoadipate CoA-transferase subunit A" FT /EC_number="2.8.3.6" FT /note="Similar to Pseudomonas putida 3-oxoadipate FT CoA-transferase subunit A PcaI SW:PCAI_PSEPU (Q01103) (231 FT aa) fasta scores: E(): 3.6e-59, 71.689% id in 219 aa, and FT to Acinetobacter calcoaceticus 3-oxoadipate CoA-transferase FT subunit A PcaI and CatI SW:PCAI_ACICA (Q43973) (228 aa) FT fasta scores: E(): 7.8e-54, 65.929% id in 226 aa. Also FT similar to BP1788 (50.228% identity in 219 aa overlap), and FT to BP2401 (48.684% identity in 228 aa overlap)." FT /db_xref="GOA:Q7W0C4" FT /db_xref="HSSP:1K6D" FT /db_xref="InterPro:IPR004163" FT /db_xref="UniProtKB/TrEMBL:Q7W0C4" FT /protein_id="CAE40601.1" FT /translation="MISKLVATAADALADVPDGATVMIGGFGTAGQPMELIDALLEQGA FT KDLVIINNNAGNGTTGLAALLGAGRVRKIICSFPRQVDSQIFDGLYRAGKLELELVPQG FT NLAERIRAAGAGIGAFFTPTGYGTPLADGKETREINGRQYVLEYPLHADYALIQAERGD FT RWGNLVYRKTARNFGPIMASAARVAVAQVRQVVELGQLDPEAVVTPGIFVKRVVQIDAP FT RGAKEQ" FT misc_feature 231048..231698 FT /note="HMMPfam hit to PF01144, Coenzyme A transferase" FT misc_feature 231090..231137 FT /note="ScanRegExp hit to PS01273, Coenzyme A transferases FT signature 1. Confirmed by InterPro eMOTIF pattern match." FT CDS 231725..232369 FT /transl_table=11 FT /gene="catJ" FT /gene_synonym="pcaJ" FT /locus_tag="BP0222" FT /product="3-oxoadipate CoA-transferase subunit B" FT /EC_number="2.8.3.6" FT /note="Similar to Pseudomonas putida 3-oxoadipate FT CoA-transferase subunit B PcaJ SW:PCAJ_PSEPU (Q01104) (212 FT aa) fasta scores: E(): 1.9e-53, 66.190% id in 210 aa, and FT to Acinetobacter calcoaceticus 3-oxoadipate CoA-transferase FT subunit B PcaJ and CatJ SW:PCAJ_ACICA (Q59091) (218 aa) FT fasta scores: E(): 4.1e-50, 62.981% id in 208 aa. Also FT similar to BP1789 (50.472% identity in 212 aa overlap), and FT to BP2400 (49.268% identity in 205 aa overlap)." FT /db_xref="GOA:Q7W0C3" FT /db_xref="InterPro:IPR004165" FT /db_xref="UniProtKB/TrEMBL:Q7W0C3" FT /protein_id="CAE40602.1" FT /translation="MSSKLTRDEIAARVAQDIPEGAYVNLGIGLPTLVANHLPADREVI FT LHTENGMLGMGPAPAKGQEDYDLINAGKQPVTELPGCSFFHHADSFAMMRGGHLDICVL FT GAFQVSQQGDLANWHTGAPDAIPAVGGAMDLAIGAKDVFVMMELQTRDGQSKLVQACTY FT PLTGVRCVSRVYTDMAVFDLRAGQITVTDLFGDTTREQLLALTGLPLKFAD" FT misc_feature 231740..232342 FT /note="HMMPfam hit to PF01144, Coenzyme A transferase" FT CDS 232426..232701 FT /transl_table=11 FT /gene="catC2" FT /gene_synonym="mmlJ" FT /locus_tag="BP0223" FT /product="methylmuconolactone isomerase" FT /EC_number="5.3.3.4" FT /note="Similar to Alcaligenes eutrophus methylmuconolactone FT isomerase MmlJ TR:O51800 (EMBL:X99639) (91 aa) fasta FT scores: E(): 5.3e-23, 63.736% id in 91 aa, and to FT Acinetobacter lwoffii muconolactone delta-isomerase 2 CatC2 FT SW:CTC2_ACILW (O33951) (96 aa) fasta scores: E(): 1.7e-22, FT 63.736% id in 91 aa" FT /db_xref="GOA:Q7W0C2" FT /db_xref="InterPro:IPR003464" FT /db_xref="UniProtKB/TrEMBL:Q7W0C2" FT /protein_id="CAE40603.1" FT /translation="MLFMVQMQVNLPPDMPAERADKLKADEKALAQQMQRDGKWRHLWR FT VAGRYANVSIFDAADNDELHQMLSALPLFPYMDIQVTALARHPSAI" FT misc_feature 232426..232698 FT /note="HMMPfam hit to PF02426, Muconolactone FT delta-isomerase" FT CDS 232727..233023 FT /transl_table=11 FT /locus_tag="BP0224" FT /product="conserved hypothetical protein" FT /note="Similar to Alcaligenes eutrophus hypothetical 11.0 FT kDa protein TR:Q9F188 (EMBL:AF042280) (98 aa) fasta scores: FT E(): 6.7e-25, 65.306% id in 98 aa, and to Caulobacter FT crescentus hypothetical protein Cc0069 TR:Q9AC00 FT (EMBL:AE005681) (93 aa) fasta scores: E(): 2.7e-08, 45.122% FT id in 82 aa" FT /db_xref="InterPro:IPR005545" FT /db_xref="UniProtKB/TrEMBL:Q7W0C1" FT /protein_id="CAE40604.1" FT /translation="MPYIIETFDKPGSLAVRQQHRNAHLQFLDQHKHLLLACGAKLDDD FT GKDLGGGLYVVDVDTRAAAEQFIQADPFHLAGLFERVAITRWRKAYVDGTSYL" FT CDS 233069..233848 FT /transl_table=11 FT /gene="catD2" FT /locus_tag="BP0225" FT /product="3-oxoadipate enol-lactone hydrolase" FT /EC_number="3.1.1.24" FT /note="Similar to Alcaligenes eutrophus 3-oxoadipate FT enol-lactone hydrolase CatD2 TR:Q9EV45 (EMBL:AF042280) (259 FT aa) fasta scores: E(): 4.2e-56, 58.915% id in 258 aa, and FT to Pseudomonas putida PcaD-like protein TR:Q9WWZ4 FT (EMBL:AF031417) (228 aa) fasta scores: E(): 1.1e-35, FT 45.778% id in 225 aa" FT /db_xref="GOA:Q7W0C0" FT /db_xref="InterPro:IPR012790" FT /db_xref="UniProtKB/TrEMBL:Q7W0C0" FT /protein_id="CAE40605.1" FT /translation="MSYADLSQARLYYVIDGPADAPVLVLSNSLGTCADMWARQIPELS FT RRFRVLRYDTRGHGKSSVPDGEYSFAQLGGDVAELLEHLRIERAHFCGLSMGGPTGMWL FT ALERPELIDRLVLCNTAARIGSAEGWSARIAAVRQDGLETMAPGLVERWLTPQYRAAEP FT GLVQVLVDMLRRIPDAGYMANCAALRDADLRERVAAIRARTLVISSTHDLAATPQDGKA FT LAAAIPGARYVELDTSHISNWEQPEAFTRALTGFLTE" FT misc_feature 233210..233839 FT /note="HMMPfam hit to PF00561, alpha/beta hydrolase fold" FT CDS 233845..234894 FT /transl_table=11 FT /locus_tag="BP0226" FT /product="conserved hypothetical protein" FT /note="Similar to Streptomyces coelicolor hypothetical 34.1 FT kDa protein Scif3.09C TR:CAC37528 (EMBL:AL590982) (320 aa) FT fasta scores: E(): 1e-08, 33.529% id in 340 aa" FT /db_xref="UniProtKB/TrEMBL:Q7W0B9" FT /protein_id="CAE40606.1" FT /translation="MNGMQRWKQRPPGSNWGDFGPDDQLGRLNLITPAEVLKAAQEIRA FT GRSFCLSLPLDLPGGNVLNPRRHPPQLSPTRLQDTPYVNFPLRNINPDAVDVLSDDQVL FT LSMQYSTQWDSLAHVGALFDADGDGRAELCYYNGYRAGIDIVGPADADHAGCGCNTGGP FT SSALKLGIENLAQHSVQGRGVLLDLARHYGAGRTLVGYKELTQALAADGIEIESGDMLV FT LRTGYAKAVVGMNGKPDADVLHQYGAALDGTDAELLQWITDSGIAAICADNYAVEAYPA FT RERQGPRAMLPLHHHCLFKLGLPLAELWYLKDLAEWLHANGRHRFMLTAPPLRLPHAIG FT SPVTPVATV" FT CDS complement(234999..235322) FT /transl_table=11 FT /gene="psiF" FT /locus_tag="BP0227" FT /product="phosphate starvation-inducible protein precursor" FT /note="Similar to Escherichia coli phosphate FT starvation-inducible protein PsiF precursor or B0384 FT SW:PSIF_ECOLI (P27295) (106 aa) fasta scores: E(): 0.00082, FT 51.220% id in 82 aa, and to Pseudomonas aeruginosa FT hypothetical protein Pa4874 TR:Q9HUT9 (EMBL:AE004901) (138 FT aa) fasta scores: E(): 2.9e-11, 50.562% id in 89 aa" FT /db_xref="InterPro:IPR011690" FT /db_xref="UniProtKB/TrEMBL:Q7W0B8" FT /protein_id="CAE40607.1" FT /translation="MISRVSKFAACTLVSLFCSTAAWAQASASKELTPQQKRMAECNKS FT ATGKTGDERKAYMSSCLKGEEPANKLTPQQQRMKDCNSRASEQALTGKKRKAYMSTCLS FT GKS" FT misc_feature complement(235251..235322) FT /note="Signal peptide predicted for BP0227 by SignalP 2.0 FT HMM (Signal peptide probabilty 1.000) with cleavage site FT probability 0.992 between residues 24 and 25" FT CDS complement(235479..236429) FT /transl_table=11 FT /locus_tag="BP0228" FT /product="transposase" FT /note="transposase for IS481 element" FT /db_xref="GOA:Q84CT8" FT /db_xref="InterPro:IPR001584" FT /db_xref="UniProtKB/TrEMBL:Q84CT8" FT /protein_id="CAE40608.1" FT /translation="MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKW FT LGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVS FT RVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEG FT AGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAF FT RSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKS FT WLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT" FT repeat_region 235479..235510 FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT repeat_region complement(235479..236531) FT misc_feature complement(235515..236048) FT /note="HMMPfam hit to PF00665, Integrase core domain" FT misc_feature complement(236106..236171) FT /note="Predicted helix-turn-helix motif with score 2406 FT (+7.38 SD) at aa 87-108, sequence LTQARIAQALGVSASTVSRVLA" FT repeat_region complement(236500..236531) FT /rpt_type=INVERTED FT /note="Inverted repeat for IS481 element" FT CDS complement(236528..237325) FT /transl_table=11 FT /locus_tag="BP0229" FT /product="beta-D-hydroxybutyrate dehydrogenase" FT /EC_number="1.1.1.30" FT /note="Similar to Pseudomonas putida beta-D-hydroxybutyrate FT dehydrogenase BdhA TR:Q9AE70 (EMBL:AJ310211) (256 aa) fasta FT scores: E(): 1.6e-35, 45.349% id in 258 aa, and to FT Pseudomonas SpGM101 beta-hydroxybutyrate dehydrogenase HbdH FT TR:Q9KH52 (EMBL:AF271714) (255 aa) fasta scores: E(): FT 2.1e-35, 45.736% id in 258 aa" FT /db_xref="GOA:Q7W0B7" FT /db_xref="HSSP:1DFI" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q7W0B7" FT /protein_id="CAE40609.1" FT /translation="MNPARPLHGRCALITGAEAGLGLAIADTLARSGADIVMHCLQANE FT SARQAQAALAREHGVRVLLLQADLRDVDQIEAMAAQALAELPRLDILVNNAVVRHFEPA FT HELPRAHWDESLAVNLSAAFHLARLALPGMLAQGWGRIINLSSVYGAGAAANRVGYVTT FT KTALLGLTRALAVETAASGITSNAVAPGTAPTPAIVGRITEIARRDGVAQEQAEREYLA FT ARQPTGRFVAMENVAALVAFLCSDAGRDITGATLPIDGGWTAA" FT misc_feature complement(236552..236644) FT /note="HMMPfam hit to PF00678," FT misc_feature complement(236738..237298) FT /note="HMMPfam hit to PF00106, short chain dehydrogenase" FT misc_feature complement(236801..236887) FT /note="ScanRegExp hit to PS00061, Short-chain FT dehydrogenases/reductases family signature." FT CDS complement(join(237322..237579,237581..238258)) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0230" FT /product="conserved hypothetical protein (Pseudogene)" FT /note="Pseudogene. This CDS appears to have a frameshift FT mutation following codon 226. The sequence has been checked FT and believed to be correct. Similar to Archaeoglobus FT fulgidus hypothetical 29.0 kDa protein Af1509 TR:O28763 FT (EMBL:AE000998) (262 aa) fasta scores: E(): 3.4e-06, FT 30.290% id in 241 aa, and to Deinococcus radiodurans FT conserved hypothetical protein Dr1823 TR:Q9RTE2 FT (EMBL:AE002022) (253 aa) fasta scores: E(): 0.00019, FT 30.043% id in 233 aa" FT /db_xref="PSEUDO:CAE40610.1" FT misc_feature complement(join(237433..237579,237581..238045)) FT /note="HMMPfam hit to PF00753, Metallo-beta-lactamase FT superfamily" FT variation complement(237581..237582) FT /note="GG in pertussis; GG(GT) in parapertussis" FT misc_feature complement(237965..237997) FT /note="ScanRegExp hit to PS00136, Serine proteases, FT subtilase family, aspartic acid active site." FT CDS 238275..238685 FT /transl_table=11 FT /gene="pcaC" FT /locus_tag="BP0231" FT /product="4-carboxymuconolactone decarboxylase" FT /EC_number="4.1.1.44" FT /note="Similar to Acinetobacter calcoaceticus FT 4-carboxymuconolactone decarboxylase PcaC SW:DC4C_ACICA FT (P20370) (134 aa) fasta scores: E(): 1.2e-19, 43.333% id in FT 120 aa, and to Pseudomonas putida PcaC-like protein FT TR:Q9WWZ5 (EMBL:AF031417) (130 aa) fasta scores: E(): FT 2.7e-24, 55.556% id in 108 aa" FT /db_xref="GOA:Q7W0B6" FT /db_xref="InterPro:IPR003779" FT /db_xref="UniProtKB/TrEMBL:Q7W0B6" FT /protein_id="CAE40611.1" FT /translation="MALRPEFQTEQFQKGLAVRRAVVGDAYVDKSLNSADDLTASLQKL FT VTEYCWGEVWTRPGLERKTRSFLNLAMLIALNRPNELRLHLRGAINNGVTKDEIVEVVL FT QAAIYCGVPAALDAMKAVREVVETMEKEGAFA" FT misc_feature 238386..238646 FT /note="HMMPfam hit to PF02627, Carboxymuconolactone FT decarboxylase" FT CDS join(238740..238847,238851..239690) FT /pseudo FT /transl_table=11 FT /locus_tag="BP0232" FT /product="probable oxidoreductase (Pseudogene)" FT /note="Pseudogene. This CDS contains an in-frame TAA stop FT codon. The sequence has been checked and believed to be FT correct. Similar to Escherichia coli FT 2-hydroxy-3-oxopropionate reductase GarR or B3125 FT SW:GARR_ECOLI (P23523) (294 aa) fasta scores: E(): 5.1e-26, FT 34.164% id in 281 aa, and to Salmonella typhimurium FT hypothet |