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EBI DbfetchID BX572593; SV 1; linear; genomic DNA; STD; PRO; 349315 BP. XX AC BX572593; XX DT 09-DEC-2003 (Rel. 78, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 6) XX DE Rhodopseudomonas palustris CGA009 complete genome; segment 1/16 XX KW complete genomes. XX OS Rhodopseudomonas palustris CGA009 OC Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; OC Bradyrhizobiaceae; Rhodopseudomonas. XX RN [1] RP 1-349315 RX DOI; 10.1038/nbt923 RX PUBMED; 14704707. RA Larimer F.W., Chain P., Hauser L., Lamerdin J., Malfatti S., Do L., RA Land M.L., Pelletier D.A., Beatty T.J., Lang A.S., Tabita F.R., RA Gibson J.L., Hanson T.E., Torres y Torres J., Peres C., Harrison F.H., RA Gibson J., Harwood C.S.; RT "Complete genome sequence of the metabolically versatile photosynthetic RT bacterium Rhodopseudomonas palustris"; RL Nature Biotech 22(1):55-61(2004). XX RN [2] RP 1-349315 RG Rhodopseudomonas genome consortium RA Larimer F.W., Harwood C.S.; RT ; RL Submitted (24-JUL-2003) to the EMBL/GenBank/DDBJ databases. RL Submitted on behalf of the Rhodopseudomonas genome consortium, the DOE RL Joint Genome Institute, Production Genomics Facility, 2800 Mitchell Drive, RL Walnut Creek, CA 94598, USA, and the Genome Analysis Group, Oak Ridge RL National Laboratory, 1060 Commerce Park Drive, Oak Ridge, TN 37831, USA; RL larimerfw@ornl.gov. XX DR EMBL-CON; BX571963. DR RFAM; RF00005; tRNA. XX FH Key Location/Qualifiers FH FT source 1..349315 FT /organism="Rhodopseudomonas palustris CGA009" FT /strain="CGA009" FT /mol_type="genomic DNA" FT /db_xref="taxon:258594" FT CDS 679..2097 FT /codon_start=1 FT /transl_table=11 FT /gene="dnaA" FT /locus_tag="RPA0001" FT /product="chromosomal replication initiator protein DnaA" FT /function="InterPro IPR001957:IPR003593 COGs COG0593" FT /db_xref="GOA:Q6NDV3" FT /db_xref="InterPro:IPR013317" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDV3" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25445.1" FT /translation="MSNMEQDRWSRVKGRLRSSVGEDVYSSWFARMDLESVHDESVHLS FT VPTRFLKSWIQTHYSDKVLSCWQAELPEVNRVDLTVRSPVRCATPAKEVPAPVESRRDE FT QRPSAERSNGATPVSANHDALGGSPLDPRLTFASFVVGRSNTLAHAAAKQVAEGRRGDP FT VMFNPLYIHSGVGLGKTHLLQAVTWAGNAGTERKVLYLTAEKFMYGFVAALKTQTSLAF FT KEALRGIDVLVIDDLQFLQGKTTQAEFCHTLNALIDAGRQVVVAADRPPADLESLDERV FT RSRLAGGLVVEMAPLGEDLRLGILRSRVVAARTHHASFDVPQPVLEYLARTITHNGRDL FT EGAINRLLAHSKLNNQPVTLEMAEHEVRDLIRPSEPKRIKIEDIQRIVARQYNVSRSDL FT LSSRRTANVVRPRQVAMYLAKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIEGLVSKDTT FT LSDEVESLKRQLQE" FT CDS 2332..3450 FT /codon_start=1 FT /transl_table=11 FT /gene="dnaN" FT /locus_tag="RPA0002" FT /product="DNA polymerase III beta subunit" FT /function="InterPro IPR001001 COGs COG0592" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDV2" FT /db_xref="InterPro:IPR001001" FT /db_xref="UniProtKB/TrEMBL:Q6NDV2" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25446.1" FT /translation="MKVTVERAQLLKSLSHVHRVVERRNTIPILGNVLVRAENAQLALK FT ATDLDLEVTETLPAETATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSVLAIRAGR FT SRFTLQTLPESDFPDLAAGEMSHAFRLPASDVKRLIDRTQFAISTEETRYYLNGIYLHT FT AGSPKASSLRAVATDGHRLAQLDLTLPSGADGMPGVIVPRKTVGEVQRLIEDTEAEIGI FT ELSTGKIRFTLGNVVLTSKLIDGTFPDYGRVIPQNNDKELLVDKKDFEAAVDRVSTISS FT ERGRAVKLALSAGKLVLSVTNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIEGE FT VAVLKLADPGSPTLIQDRDSKSALYVLMPMRV" FT CDS 3667..4833 FT /codon_start=1 FT /transl_table=11 FT /gene="recF" FT /locus_tag="RPA0003" FT /product="putative RecF protein" FT /function="InterPro IPR001238:IPR001687:IPR003395 COGs FT COG1195" FT /db_xref="GOA:Q6NDV1" FT /db_xref="InterPro:IPR018078" FT /db_xref="UniProtKB/TrEMBL:Q6NDV1" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25447.1" FT /translation="MSFRARTSSMTAARITRLTLTHFRNYRGASLTTTADQVVLVGPNG FT AGKTNCLEAISFLSPGRGLRRATLEDVANHEGDGSWAVSTEIEGALGLATLGTGIEPPR FT GDTTTTRRCRIDREPVGSAAAFGDHLRMVWLTPSMDGLFMGAASERRRFFDRLVLAIDS FT GHSARVSALDRSLRSRNRLLEDVRNADSHWLDAIERETAELAIAVAAQRGQTALKLAAM FT LDARGATSAFPSAKLMLDGWMENALTSEPATAVEDRYRAILRDSRGRDAAAGRTLDGPH FT LTDLEVIYAPKAMPARDASTGEQKALLIGLVLAHAQLVAETTSITPLLLLDEVVAHLDP FT GRREALFTELGKLGAQVWMTGADPMAFAEIGPAAGIFDVENGQIRPRG" FT CDS 5050..7491 FT /codon_start=1 FT /transl_table=11 FT /gene="gyrB" FT /locus_tag="RPA0004" FT /product="DNA gyrase subunit B" FT /function="InterPro FT IPR000565:IPR001241:IPR002288:IPR003594:IPR006171 COGs FT COG0187" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDV0" FT /db_xref="HSSP:1AJ6" FT /db_xref="InterPro:IPR006171" FT /db_xref="UniProtKB/TrEMBL:Q6NDV0" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25448.1" FT /translation="MTEPARQPSAESVHPAPAEYGAESIRVLKGLDAVRKRPGMYIGDT FT DDGSGLHHMVYEVVDNAIDEALAGHASRVEVILNADGSVTVRDDGRGIPVDIHKGEGVS FT AAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLLLRVWRNDKEHYIEFAHG FT DAVAPLKVVGDANGKRGTEVTFYASAETFTHIEYDFATLEHRLRELAFLNSGVYIVLSD FT MRHAVEKREEMRYEGGVTEFVKYLDRNKKPIVPTPVVIGAELNGIMVEAALWWNDTYHE FT NVLCFTNNIPQRDGGTHLAGFRAALTRQITGYAEAGSKKEKVALTGDDCREGLTAVLSV FT KVPDPKFSSQTKDKLVSSEVRPVVENVINEALAAWLEEHPSEAKIVIGKVVEAAAAREA FT ARKARELTRRKGALDIASLPGKLADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAV FT LPLRGKILNVERARFDKMLSSEQIGTLITALGTGIGREDFDLSKLRYHKIILMTDADVD FT GAHIRTLLLTFFFRQMPALIEGGYLYIAQPPLYKVTRGKSEQYLKDERALEDYLIATGL FT DDCAFKLANGEVRGGRDLLALVEDARAIRSTLHNLHSRYNRSVVEQAAIAGVLSPRITT FT DIATANEAAAYIARRLDALADEVERGWVGHFTEGEGFRFERTVRGVKEVAAIDDAMLGS FT ADARKLDEYAAVLQEVYPRPGVLRRKEAETAIHGPISLFEAVTDAGRKGVALQRYKGLG FT EMNPSQLWETTLDTNARSLLQVKVREVDEADDIFTKLMGDVVEPRREFIQENSLHATVD FT V" FT CDS complement(7673..8791) FT /codon_start=1 FT /transl_table=11 FT /gene="hpd" FT /locus_tag="RPA0005" FT /product="4-hydroxyphenylpyruvate dioxygenase" FT /function="InterPro IPR005956 COGs COG3185" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDU9" FT /db_xref="InterPro:IPR005956" FT /db_xref="UniProtKB/TrEMBL:Q6NDU9" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25449.1" FT /translation="MGPFPHDAQPATISADNPMGTDGFEFVEFAHPDPAQLHSLFKLMG FT FSLVAKHRTKAISVYRQGDVNYLVNEQPGTHGTDFVTAHGPCAPSMAFRVVDAKQAYER FT AISLGAEPAGVTAAQATLDVPAIKGIGGSLLYFVDRYGAKGSAYDAEFDWVGSRDARPA FT GAGLYYIDHLTHNVHRGRMDVWTGFYAKLFNFRQIRFFDIEGRASGLFSRALTSPDGKI FT RIPINEDAGDSGQIEEYLSLYRGEGIQHIACGCRDIYSTVEGLRAAGLPFMPSPPETYF FT ERVDARLPKHGEDIARLQRNGILIDGEGVVDGGQTKVLLQIFSANAIGPIFFEFIQRKG FT DDGFGEGNFKALFESIEEDQIRRGVLKAERAA" FT CDS 8917..9396 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0006" FT /product="transcriptional regulator, AsnC family" FT /function="InterPro IPR000485 COGs COG1522" FT /db_xref="GOA:Q6NDU8" FT /db_xref="InterPro:IPR019888" FT /db_xref="UniProtKB/TrEMBL:Q6NDU8" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25450.1" FT /translation="MMSVDAFDLKILSALQDDGRLTNQELADRVQLSPSQCSRRRMRLE FT QDNIITGYRAELSGDALGFGVVAFIQITLATHSPDNAEKFRSLIGRIDEVQEAYSLTGD FT ADYVLKAVLRDLKGLSELVNNVLMPHQSVAHVRSSIVLDRLKESARLPVKLLANG" FT CDS complement(9442..10893) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0007" FT /product="putative signal transduction histidine kinase FT with PAS/PAC domains" FT /function="InterPro IPR000014:IPR001687 COGs COG0642" FT /db_xref="GOA:Q6NDU7" FT /db_xref="InterPro:IPR011102" FT /db_xref="UniProtKB/TrEMBL:Q6NDU7" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25451.1" FT /translation="MMSAVSALSRAELEARLEEAEETLRAIRDGEIDAVVVRAADEEQV FT FTLEGGGQSYRTFMETMDVGAAAFDQDGQLLYANQALCALLDCAHGSLTASALIALLDP FT ANQAAFRRLLAQAQRERQSAEIHLRVGDAERSMLLTGTPLEFGVVHGAAITFTDISERE FT QAAAARESERLARAILASANEAVIVCDRAGRVTHLNGAAMRICAEAPVGKTFAEAIALS FT FPEASELMSSDDIVTMATAGLPVQGLEAAVRIPSAAITDVMISAAPLVVSGERTQGCVV FT TLVDLSQRKAAERHQALLMGELDHRVKNTLTMVMAICARTAAHERTIEDFQKSFTGRIQ FT ALAATHTLLSNASWQNLHIRDVLAAELAPFASLSSGRIVTDGLDIAVDAKTAVSLGLVF FT HELTTNAVKYGALSVPSGRISVRRVGATDEALTIEWQEHDGPPVTPPQSSGFGQTLISR FT SLGNGGAKLEFDSAGVVCRISIPRS" FT CDS complement(10890..11174) FT /codon_start=1 FT /transl_table=11 FT /gene="kaiB" FT /locus_tag="RPA0008" FT /product="circadian clock protein" FT /function="COGs COG0526" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDU6" FT /db_xref="InterPro:IPR011649" FT /db_xref="UniProtKB/TrEMBL:Q6NDU6" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25452.1" FT /translation="MADPIKLVLYVAGETPKSLAAIRNLEKICAEHLAGKYKVEVIDLK FT KSPQLAREHGIVAIPTLVKELPVPIRKIIGDLSDTPKVLVHLAVEESSS" FT CDS complement(11184..12875) FT /codon_start=1 FT /transl_table=11 FT /gene="kaiC" FT /locus_tag="RPA0009" FT /product="circadian clock protein" FT /function="InterPro IPR001553:IPR001687:IPR003593 COGs FT COG0467" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDU5" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q6NDU5" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25453.1" FT /translation="MADGISKSLTGIEGFDDLTLGGLPSGRPSLVCGSAGCGKTLFAST FT FLINGARLYDEPGVFVTFEERPVDIVDNVASLGFDLQGLIAQERVLIEHIAIDPTEVAE FT VGDYDLEALFLRLEFAVDQIGAKRIVLDTIESLFSAFQNPAVLRAEIRRLFDWLKQKGL FT TAVITGERGDGTLTRQGLEEYVSDCVILLDHRVDNQISTRRLRIVKYRGTAHGTNEYPF FT LIDEEGFSVLPVSSLGLSHKVHEERISSGVPDLDAMLSGGGFYRGTSVLITGVAGSGKS FT SLACMMVDAACRRGEKALYLSFEESEAQTVRNMKSVGTDLGRWLSTGQLRYIGARPTFY FT SLEMHLAVMLREVARFKPDLVVLDPISAFTESGQIGEVQSMLLRIVDYLKSNGITGAFT FT HLAHGAQTETDAGLSSLMDAWILLLNREAHGEFNRELYLLKARGIAHSNQVREFVMSDD FT GIHLLPPYLGEGGALTGSARRAEEAKERRAESERRTEVARLQDQIEQRRRRALAQIEAL FT KADLAVDEAELQRLTQAEASFRAQSERDVTEMARRRGFIGSADDTD" FT CDS complement(13269..13778) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0010" FT /product="possible glutamate uptake transcriptional FT regulator, AsnC family" FT /function="InterPro IPR000485 COGs COG1522" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDU4" FT /db_xref="InterPro:IPR019888" FT /db_xref="UniProtKB/TrEMBL:Q6NDU4" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25454.1" FT /translation="MTDIDSVVAESNRRLDAIDRKILTVLQQDASLSVAEIGDRVGLSS FT TPCWKRIQRLEADGVIIKRVALVDQDKIGLGLSVFVSIESGDHSDAWLKTFADAVSAMP FT EVIEFYRMAGDVDYMLRVVVADMRAYDQFYKKLIGTVPLKNVTSRFAMEKIKSVTALPV FT PPMPVS" FT CDS complement(14266..14514) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0011" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q6NDU3" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25455.1" FT /translation="MAMLTYDDRPRIAVAFEPPAKPAAAPVIEPAPTSDAAEAPTEPDD FT DVQERWLQAQPWPRRWFARFYRALRKLQPAFPPMSCC" FT CDS complement(14516..14701) FT /codon_start=1 FT /transl_table=11 FT /gene="rdxS, fixS" FT /locus_tag="RPA0012" FT /product="possible fixS" FT /function="InterPro IPR004714 COGs COG3197" FT /db_xref="InterPro:IPR004714" FT /db_xref="UniProtKB/TrEMBL:Q6NDU2" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25456.1" FT /translation="MEVMVILVPLALGLGLLGLVAFLWSLKSGQYEDLDGAAWRAIADD FT DPPLPPPANVPAEKRG" FT misc_feature complement(14624..14689) FT /note="1 probable transmembrane helix predicted byTMHMM2.0" FT CDS complement(14692..16890) FT /codon_start=1 FT /transl_table=11 FT /gene="rdxI, fixI" FT /locus_tag="RPA0013" FT /product="putative cation (heavy metal) transporting FT ATPase" FT /function="InterPro FT IPR001757:IPR005834:IPR006121:IPR006191:IPR006379:IPR006403 FT :IPR006416 COGs COG2217" FT /db_xref="GOA:Q6NDU1" FT /db_xref="InterPro:IPR008250" FT /db_xref="UniProtKB/TrEMBL:Q6NDU1" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25457.1" FT /translation="MLQTRDFSHYVKDVDGRIAHLDLAVEGVHCASCMAKIERGLQSIP FT DVTLARVNLTDRRLAVEWNKGSTLEPGQFIDRLAELGYKAYPYEPVRAEVEEAERTKFL FT LRCLGVAVFATMNVMMLSVPVWYGGDLSPEARDFFHWLSALVALPCAAYAGQPFFQSAF FT RALKAKSVNMDVPITIGITLALGMSLVETINHAEHAYFDAAVMLIAFLLAGRFLDQKMR FT QKTRAVAGNLAALKAETATKFVGPDEISEVPIAAVRAGDIVLLRPGERCAVDGTVIEGR FT SEIDQSLITGETLYVPAERGTQVYAGTLNISGTLRVRVDAAAEGTLLSEITRLLDHALQ FT ARSRYVRLADRASQLYAPVVHATALLTIIGWVLAGASWHDAIVIGIAVLIITCPCALGL FT AIPAVQTVASGAMFRAGVLLNAGDAIERAASVDTIVFDKTGTLTLPELDVVNAAGIPPE FT VFDLAGRLALASHHPVAAAVARAAHAKSPLPNVVEEPGRGVRTVFGGQELRLGSPAFCG FT ADAEANQILSEDPEVSVVAFSRGEQRVVFAVRQLLRPDAAKTIDALTNRGIAVELLSGD FT REPAVRHAAAALGVSAWRASVTPAEKIAHIEALKKQGRIVMMVGDGMNDAPSLAAAHVS FT MSPISATHLSQATADLVFLGKELAPVLAAVDYSRKAMAVMRENLGLAIGYNVLAVPIAI FT AGYATPLIAALAMSGSSLLVMLNAMRARRVRRGAAPWK" FT misc_feature complement(order(14734..14784,14797..14853,15679..15744, FT 15760..15825,16240..16296,16312..16365,16402..16467, FT 16513..16578)) FT /note="8 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS complement(16925..17428) FT /codon_start=1 FT /transl_table=11 FT /gene="rdxH, fixH" FT /locus_tag="RPA0014" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR018037" FT /db_xref="UniProtKB/TrEMBL:Q6NDU0" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25458.1" FT /translation="MMSRSKSSPRPLTGKVVLAVLVAFFGIVFGVNGLMMTLAIKTLPG FT TEVDSAYAASLAYEREIAAARDQDQRGWKVEAKVERKPDGAAVLQVEARDKAGLPLAGL FT NFFGRLERPSDKRYDREVALAEVGSGVYRGDANGVLPGRWDLVLEGDQGGVRMFLSKNK FT LLLN" FT misc_feature complement(17327..17392) FT /note="1 probable transmembrane helix predicted byTMHMM2.0" FT sig_peptide complement(17336..17428) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.986) with cleavage site probability FT 0.800 atresidue 31" FT CDS complement(17445..18902) FT /codon_start=1 FT /transl_table=11 FT /gene="fixG, rdxB" FT /locus_tag="RPA0015" FT /product="4Fe-4S ferredoxin, iron-sulfur binding domain" FT /function="InterPro IPR001450 COGs COG0348" FT /db_xref="GOA:Q6NDT9" FT /db_xref="InterPro:IPR017900" FT /db_xref="UniProtKB/TrEMBL:Q6NDT9" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25459.1" FT /translation="MNKPLRATDLQPDDDGPLYTAQKKIFPQSVSGPFRRTKWILMAVC FT LGIYYFLPFVRWNRGLGAPDQAVLIDLANNRFYFFAIELWPQEIYYFTGLLIVAAIVLF FT LMNALGGRVWCGYLCPQTVWTDLFYAVERFVEGDRRERMRKAGEGFKMQRAAELALKHS FT IWLMIAWWTGGAWVLYFADAPTLIKELVTFDAPMVAYIWIGILTFTTYTLAGFMREQVC FT VYMCPWPRIQAALTDEWALNVTYKYDRGEKRSSLKKAAQLRALGEPVGDCVDCNQCVAV FT CPTGIDIRNGPQLDCIQCGLCIDACDNVMKKIGRPTRLIGYDNDINIHRRMEGKPEVFK FT PVRARTVIYSLIIVAIGGAMVYKLATRSLLDVNVLHDRNPVAVRLSDGSVRNGYTIRFL FT NKRGFDRVVAVDVEGPPNAMIHIVGADSITPARPMIILGRDTTTELRVLVDSNANDDVP FT QSVPVTFHVTDIGLGEVASTKDVFVTP" FT misc_feature complement(order(17805..17861,18252..18317,18363..18428, FT 18570..18635,18732..18785)) FT /note="5 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS complement(19019..19900) FT /codon_start=1 FT /transl_table=11 FT /gene="ccoP, fixP" FT /locus_tag="RPA0016" FT /product="cytochrome-c oxidase fixP chain" FT /function="InterPro IPR000345:IPR002329:IPR003088:IPR004678 FT COGs COG2010" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDT8" FT /db_xref="HSSP:1A2S" FT /db_xref="InterPro:IPR009056" FT /db_xref="UniProtKB/TrEMBL:Q6NDT8" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25460.1" FT /translation="MADHAHHGEIDKVTGTATTGHEWDGIQELNTPLPRWWIWTFYATI FT IWSIGYFIVYPAWPLMNGYTRGLFGYSSRAELDVDLAKLNQVRGEKMQALATASLEEIE FT KNPALLALARAKGKVVFGDNCAPCHGSGAAGGKGFPNLNDDDWLWGGSLEQIEKTIKYG FT ARSGNDEGHMGNMLAFGKDGTLTKDQIVQVANFVRSLSGQSTRPGVDLAAGKQIFAENC FT VACHGEDAKGNPELGAPNLTDKIWLYGGDEATIIETITNGRGGVMPAWIGRLDPTTIKA FT MAVYVHSLGGGK" FT misc_feature complement(19727..19792) FT /note="1 probable transmembrane helix predicted byTMHMM2.0" FT CDS complement(19908..20072) FT /codon_start=1 FT /transl_table=11 FT /gene="ccoQ, fixQ" FT /locus_tag="RPA0017" FT /product="cytochrome oxidase subunit, small membrane FT protein" FT /db_xref="InterPro:IPR008621" FT /db_xref="UniProtKB/TrEMBL:Q6NDT7" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25461.1" FT /translation="MKAIIYFDNIASSLVTTWWTPLFMAIFVAIVVYALWPKNKEAFDE FT AAQMPLRED" FT misc_feature complement(19962..20027) FT /note="1 probable transmembrane helix predicted byTMHMM2.0" FT CDS complement(20082..20816) FT /codon_start=1 FT /transl_table=11 FT /gene="ccoO, fixO" FT /locus_tag="RPA0018" FT /product="cytochrome-c oxidase fixO chain" FT /function="InterPro IPR000345:IPR003468 COGs COG2993" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDT6" FT /db_xref="InterPro:IPR009056" FT /db_xref="UniProtKB/TrEMBL:Q6NDT6" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25462.1" FT /translation="MSIWARHKIFETNSVVLIVGILLVIAIGGLVEITPLFYLKSTIEK FT VDGVRPYTPLELAGRNIYIREGCYLCHSQMIRPLRDEIERYGHYSLAAESMYDHPFQWG FT SKRTGPDLARVGGKYSDDWHVAHLKNPRSIVPQSVMPNYAFLADNKVDVASLSDHLKTN FT RTLGVPYSDEDIAKAAADAKAQVDPEGAAAADLQKRYPKAVVRNFDGQPGDPTELDALV FT SYLQMLGTLVDFKLYDEKANLR" FT misc_feature complement(20712..20777) FT /note="1 probable transmembrane helix predicted byTMHMM2.0" FT CDS complement(20829..22475) FT /codon_start=1 FT /transl_table=11 FT /gene="ccoN, fixN" FT /locus_tag="RPA0019" FT /product="cytochrome-c oxidase fixN chain, heme and copper FT binding subunit" FT /function="InterPro IPR000883:IPR004677 COGs COG3278" FT /db_xref="GOA:Q6NDT5" FT /db_xref="InterPro:IPR004677" FT /db_xref="UniProtKB/TrEMBL:Q6NDT5" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25463.1" FT /translation="MNQALNSKRITLGEGGLTVVFALTTILSIYAAIYAKDAPFAFHAA FT LAAAFSAWAVFAIIVRHRSRSGLPPQEINGAPNYNLGPIKFLSFMAMFWGIAGFSAGLY FT IALELAYPGLNIAQWVNFGRLRPLHTSAVIFAFGGNVLLATSFYVVQKTTRARLAGDLA FT PWFVAIGYNFFIVIAGTGYLLGVTQSKEYAEPEWYADLWLTIVWVTYLLVFLATLMKRK FT EPHIYVANWFYLAFIITIAVLHLGNNPTLPVSFLGSKSYIAWSGVQDAMFQWWYGHNAV FT GFFLTAGFLAIMYYFIPKRAERPVYSYRLSIIHFWALIFLYIWAGPHHLHYTALPDWTQ FT TLGMTFSIMLWMPSWGGMINGLMTLSGAWDKLRTDPVLRMMVVSVAFYGMSTFEGPMMA FT IKAVNSLSHYTDWTIGHVHSGALGWVGFVSFGALYCLVPWVWGRKQLYSIRLVNWHFWI FT ATLGIVLYISAMWVSGILQGLMWRAYTSLGFLEYSFIESVEAMHPFYAIRAAGGGLFLI FT GALIMAYNLWMTVRVGERSEAQPRVALQPAE" FT misc_feature complement(order(20898..20963,21048..21113,21150..21215, FT 21276..21332,21369..21434,21480..21545,21585..21650, FT 21741..21797,21819..21884,21924..21989,22026..22091, FT 22152..22217,22296..22361,22374..22439)) FT /note="14 probable transmembrane helices predicted FT byTMHMM2.0" FT sig_peptide complement(22332..22475) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.757) with cleavage site probability FT 0.290 atresidue 48" FT CDS complement(22786..23706) FT /codon_start=1 FT /transl_table=11 FT /gene="panE1" FT /locus_tag="RPA0020" FT /product="Ketopantoate reductase ApbA/PanE" FT /function="InterPro IPR003710 COGs COG1893" FT /db_xref="GOA:Q6NDT4" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q6NDT4" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25464.1" FT /translation="MRILIVGAGAIGGYFGGRLLQLGRDVTFLVRPGRAAELTRDGLVI FT KSPHGDATIQNPPAVQAAALTPDYDLVVLSCKAFDLDDAIASFRGGVGPRTAILPLLNG FT MKHLDVLDTAFGRDRVLGGQCVIAATLDAQRHVVQLAPMSAITFGERDGASSERVAQIA FT VALGGSDFGVNASPVIMQEMWEKWVFLATLAGSTSLMRGAVGEILAAPGGADFMLGVLD FT EITSIAAAAGHPPRPAAVERTRNMLLAEGSTLTASMFRDILAGARIEADHVVGDLIDRA FT DEAKVPVPRLRVIYTHLKTYERRRG" FT CDS complement(23779..24516) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0021" FT /product="possible short chain dehydrogenase" FT /function="InterPro IPR002198 COGs COG1028" FT /db_xref="GOA:Q6NDT3" FT /db_xref="InterPro:IPR016040" FT /db_xref="PDB:3H7A" FT /db_xref="UniProtKB/TrEMBL:Q6NDT3" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25465.1" FT /translation="MTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPL FT VAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPLEVTIFNVGANVNFPILETTDRV FT FRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLRGGSGFAAFASAKFGLRAV FT AQSMARELMPKNIHVAHLIIDSGVDTAWVRERREQMFGKDALANPDLLMPPAAVAGAYW FT QLYQQPKSAWTFEMEIRPYGEKW" FT CDS complement(24637..25239) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0022" FT /product="DSBA oxidoreductase" FT /function="InterPro IPR001853" FT /db_xref="GOA:Q6NDT2" FT /db_xref="InterPro:IPR012335" FT /db_xref="UniProtKB/TrEMBL:Q6NDT2" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25466.1" FT /translation="MTQPAPQFLFDFGSPNAFLAHEAIPAIEQRIGVKFDYVPVLLGGI FT FKATNNKSPAETLAGIKNKREFLVVETERFLKRYAVKPYVWNPHFPVNTLNLMRAAVAA FT QLEGVFEKYVEAAFHHMWVEPKKMDDLEVAAAALSSSGLDGKALLTRAQEPEVKAKLIA FT NTEDAVQRGAFGSPTFFVGKEMFFGKEQLRDVEELYG" FT CDS 25362..26123 FT /codon_start=1 FT /transl_table=11 FT /gene="gstA3" FT /locus_tag="RPA0023" FT /product="possible glutathione transferase" FT /function="InterPro IPR001687:IPR004045:IPR004046 COGs FT COG0625" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDT1" FT /db_xref="InterPro:IPR010987" FT /db_xref="UniProtKB/TrEMBL:Q6NDT1" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25467.1" FT /translation="MSRAAETLLRRCAFSRLVPLQSLTDIRDHRDMLTVHHLNNSRSQR FT VLWLLEELDTPYEIKRYQRQPDMMAPKELRAVHPLGKSPVITDNGNTIAESGAIIEYIV FT GTYGNGRLIPPPNTPERLRYTYWLHYAEGSAMPPLLLKLLFSMMPQRAPALVRPLVKMV FT ASGALTGFVDPQLKLHMDYWESELGKAAYFAGDEFTAADIQMSFPLEAAAARGGLDQRY FT PKAQAWLERIHARPAYNRALEKGGPYEIGKA" FT CDS complement(26235..27110) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0024" FT /product="Short-chain dehydrogenase/reductase SDR" FT /function="InterPro IPR002198 COGs COG1028" FT /db_xref="GOA:Q6NDT0" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q6NDT0" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25468.1" FT /translation="MASLQGKTLFITGASRGIGLAIALRAARDGANVAIAAKTTEPHPK FT LKGTIYTAAEEIVAAGGKALPLVCDIRDEAQVIDAIGKTVAEFGGIDICVNNASAISLT FT NSQATDMKRYDLMMGINTRGTFMVSKYCIPHLKKAANPHILMLSPPLDMKAKWFAASTA FT YTMAKFGMSMVALGLSGELKHSGVAVNALWPRTTIATAAVGNLLGGDAMIRASRTPEIM FT GDAAHAILTRPSREFTGQFCVDDSVLYEAGVRDFEPYRVDPSVPLMSDFFVPDDSVPPP FT GVTVTPLPMG" FT CDS complement(27385..29118) FT /codon_start=1 FT /transl_table=11 FT /gene="ggt1" FT /locus_tag="RPA0025" FT /product="gamma-glutamyltranspeptidase" FT /function="InterPro IPR000101 COGs COG0405" FT /EC_number="2.3.2.2" FT /db_xref="GOA:Q6NDS9" FT /db_xref="InterPro:IPR000101" FT /db_xref="UniProtKB/TrEMBL:Q6NDS9" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25469.1" FT /translation="MITLRVPQRILMTLAALVLVVIPLAAPAQDMRSGMARGPAQAVVA FT KHGMVVAQERLAADIGAGFLSRGGNAIDAAVATGFAMAVTYPRAGNLGGGGFMVIHSAV FT KNEDVAIDYRETAPQAATQDMFLTDGKPDPDKSRKSALGIGVPGTVAGLALALEKYGSG FT KFKLADVIAPAIALARDGITVADDTADTLPDWHAWLSRWPSTRKVFARPDGSPLQAGDR FT LVQPDLAATLEAIAKRGPDGFYRGPIAEKLSRGIREAGGLITPEDLAGYQPMLRSPLRG FT SYRGYDIVAMPQPSSGGVVLIESLNILEGYAMHDLGQGTPPSLHLLIEAMKRAYADRAR FT YLGDPAFSEAPVTKLLSKDYAASLRAGIDPERATPVAEPLPQPREGQNTTHFSVADAEG FT NAVSNTYTLNFSYGLGLVADGTGVLLNNELDDFTAAPGASNAYGLVGFAANLPAPGKRP FT LSSMSPTIVLKDGKPVLVTGSPGGSRIISAVLQVIVDVIDYRMNVADAVAAPRLHHQWL FT PDEVRVEGGFPEATLDTLRAMGHRIVTPLGQTSANSILIDADGFHGAPDPRTRGATAAG FT N" FT misc_feature complement(29032..29097) FT /note="1 probable transmembrane helix predicted byTMHMM2.0" FT sig_peptide complement(29032..29118) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.999) with cleavage site probability FT 0.744 atresidue 29" FT CDS 29224..30621 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0026" FT /product="Major Facilitator Superfamily (MFS) transporter" FT /function="InterPro IPR001687:IPR007114 COGs COG2270" FT /db_xref="InterPro:IPR011701" FT /db_xref="UniProtKB/TrEMBL:Q6NDS8" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25470.1" FT /translation="MSSSLAEGIAQTREPIRYPPQSAVVGWILFDWAAQPYFTLITTFI FT FAPYFATYVAPDPATGQSLWGFATAASGFVIALASPVLGAIADASGRRKPWIALFGGML FT VIGSMLMWFGKPGEPHTILPLLIAYALATIGVEFATVFNNAMMPNLVPPEKIGRLSGTG FT WATGYVGGILSLILVLGFLAASPDTGKTLLGITPWFGLDPALHEGDRISGPLTGMWFVV FT FVLPMFLLTPDFPAKLAPRAAIREGLRELGKTLRDLPRRRSLAIFLLANMIYTDGLVSL FT FAFGGIYATGTFGWSTIQIGTFGVILAIAATIGAFTGGRLDDAFGSKRVITGSLLLLLV FT AIAGILLIDPSHVLLIEVTPPQPGAALFASPAERAYLLLGCLIGIAGGPLQAASRTLLI FT RIAPRDRIAQYFGLFALTGKVTSFIGPLLIASVTALASSQKAGMAVLVLFFVAGLALLT FT QVRRSAD" FT misc_feature order(29320..29388,29413..29481,29509..29562,29581..29649, FT 29707..29775,30010..30078,30106..30174,30211..30267, FT 30349..30417,30451..30519,30547..30603) FT /note="11 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS 30837..31931 FT /codon_start=1 FT /transl_table=11 FT /gene="aroG1" FT /locus_tag="RPA0027" FT /product="2-dehydro-3-deoxyphosphoheptonate aldolase" FT /function="InterPro IPR006218:IPR006219 COGs COG0722" FT /EC_number="2.5.1.54" FT /db_xref="GOA:Q6NDS7" FT /db_xref="HSSP:1KFL" FT /db_xref="InterPro:IPR006218" FT /db_xref="UniProtKB/TrEMBL:Q6NDS7" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25471.1" FT /translation="MLTTTDDLRLQKITELSTPAEVMGEIPRTLTATRTVAASRSAIHA FT ILNGADDRLLVVVGPCSIHDPAAAMDYASRLAALRETLADRLEIVMRVYFEKPRTTVGW FT KGLINDPDLDGSFRIDKGLRLAREVLSAVNNLGLPAATEFLDLITPQYIADLVAWGAIG FT ARTTESQIHRELASGLSCPIGFKNGTDGNVRIAAEAVKSAAQPHHFMAVTKGGRNAIAA FT TTGNSDCHVILRGGVTPNYDAASVEAAAAVLGKIGLPPRLMIDASHANSSKQPDNQPKV FT TADIGRQMAAGESRIIGVMIESNLVAGRQDVAPGRPLQYGQSITDGCIDWATTETVLHE FT LADAVESRRAARHAASAQQKGAAA" FT CDS complement(31989..33581) FT /codon_start=1 FT /transl_table=11 FT /gene="purH" FT /locus_tag="RPA0028" FT /product="bifunctional purine biosynthesis protein" FT /function="InterPro IPR002695:IPR004362 COGs COG0138" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDS6" FT /db_xref="InterPro:IPR011607" FT /db_xref="UniProtKB/TrEMBL:Q6NDS6" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25472.1" FT /translation="MTQNSRRVTRALLSVSDKTGLIDFARALAGHGVELVSTGGTAKAI FT AAAGLPVKDVSELTGFPEMMDGRVKTLHPKVHGGLLAIRDNDEHTQAMAAHGIPQIDLL FT VVNLYPFEATVDKGASYEDCIENIDIGGPAMIRAAAKNHDDVAVVVEASDYQAVLDELT FT ANNGATTLPLRKRLAAKAYARTAAYDAAISNWFALQLKTDAPDFRAIGGRLIQSLRYGE FT NPHQTAAFYATPEKRPGVATARQVQGKELSYNNINDTDAAYECVGEFDAARTAACVIVK FT HANPCGVAEGSSLLDAYKKALACDSVSAFGGIVALNRTLDAEAARAITEIFTEVIIAPD FT ATDEAIAIVAAKKNLRLLLAGALPDPRANGLTYKTVAGGLLVQSRDNAVVDDMALKVVT FT KRQPTEAELRDLKFAFRVGKHVKSNTIIYAKDLATVGIGAGQMSRVDSARIAARKAQDA FT AEAMKLAAPMTKGSVVASDAFFPFADGMLACIEAGATAVIQPGGSVRDDEVIKAADDAG FT IAMVFTGTRHFRH" FT CDS complement(33767..35653) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0029" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR012480" FT /db_xref="UniProtKB/TrEMBL:Q6NDS5" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25473.1" FT /translation="MSAEPFQSKLYRTGRLSDVLRGLTSAVRRGQQRDAYQRPGALAQV FT SATPRRGISALIVGRFARTVMARASGGSVAVTRLWPGRTDRLIIAPHDLRTADATRAAE FT IYAGRFVFAGKIVTCHGRSIFDLEPPSDDWEAALLGFGWLRHLRAADTAITRANARSLV FT DDWLSNMSRTGPVGRRPDVLARRVISLLSQAPLVLSDTDGKFYRRYLRGLTREIRALRY FT ALLDVQDGVPRLQVLIALCYASLCLANQARQIRGATKKLSDELQRQILPDGGHISRNPS FT ALIELLIDLLPLRQTFAARNIAPPPALLNAIDRMMPMLRFFRHGDGNFALFNGMSATPS FT DLLATLLAYDDSQGTPLASMPHSGYQRIDAGTTLVIVDAGTPPPANVSQEAHAGCLSFE FT LSSGPCRIVINSGMPTTNRESWRGFARSTVAHSTVTCHDTSSCSFVERSAMKRFLHGAP FT VVGGPRQVENRREEVAGGVLLTTSHDGYRDKFGVLHRRVLMVKHDGSRVDGEDSLSPVQ FT GGRHRAAQADYAVRFHLHPLVKASRLHDARGVMLVLPNREVWTFEAADDKVDLEETVFL FT AGNDGPRRSTQIVIRQNSIEAPNLRWSFIRSNASPQATSARRAARHEPELPL" FT CDS complement(35820..37172) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0030" FT /product="Bacterial Sun/eukaryotic nucleolar Nop1/Nop2" FT /function="InterPro IPR000051:IPR001678:IPR006027:IPR006174 FT COGs COG0144" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDS4" FT /db_xref="InterPro:IPR006027" FT /db_xref="UniProtKB/TrEMBL:Q6NDS4" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25474.1" FT /translation="MPAPRFAQASEVPGLAARRIAADILDGVLQKRRMLDDQLEGPAAH FT PGLKTLSDRDRALMRRLVATILRRLGTLEGLLAKLLDRGVPTDAPRAKSALLIGAAQIL FT WMDVPDHAAVDLSVRLVQSDRRAAKYAGLVNAVLRRCAREGQPLVEELAAGTPDVPQWL FT LARWSEHYGAETTRAIAHAISHEPSLDLTVKSDPAHWAARLHGEVLPTGTVRTLLQGSV FT RMLPGFDEGQWWVQDAAAALPARLFGDIAGKSVADLCAAPGGKTAQLAAAGARVTAIDR FT SPARVARLRENLARLSLKVETGVADAAEWRGDATAEFDAVLIDAPCASTGTIRRHPDVA FT WLKQESDIGALAAVQNRLLKKAASLLRPGGTLVYCTCSLEPEEGEQAIAALLDAESSMR FT RQPIDPAEVAGLAEIVTTDGALRTLPCHLPHSDPRLAGLDGFYAARLVKSL" FT CDS 37325..37543 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0031" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR012875" FT /db_xref="UniProtKB/TrEMBL:Q6NDS3" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25475.1" FT /translation="MTNPDPKSATMDAASPRKDLPEAAKRALAEAEARRVEAAKHAEAR FT AKEVQGPKGPEPTRYGDWEVKGIASDF" FT CDS 37629..38204 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0032" FT /product="possible Staphylococcal nuclease homologues" FT /function="InterPro IPR006021 COGs COG1525" FT /db_xref="GOA:Q6NDS2" FT /db_xref="InterPro:IPR006021" FT /db_xref="UniProtKB/TrEMBL:Q6NDS2" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25476.1" FT /translation="MSPYPRTNPVRISRLPWRSRLWPWVFVLGVAAGTMLPARHWLLHL FT PWLQPPASLGIDNDSETVWRRAGNPTTRHPVDVLYTIDGDTFDARVHLWPGTDLRTRVR FT LRGIDAPELKAQCACELRMAEAAADELRRLLAEGEVAIYNIGPDKYQGRVVADVATKRT FT ANVSNALLDGGYARAYGGGHRDGWCDGR" FT misc_feature 37689..37757 FT /note="1 probable transmembrane helix predicted byTMHMM2.0" FT CDS complement(38208..39092) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0033" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q6NDS1" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25477.1" FT /translation="MGVVLETIGKLIASYLQKEEPGYEPFTPSDPDHLRTIMEPGDVLL FT VEGNSRIAGIIKYLTQSTWSHAALYVGPIDGVTEPDGEPHVLVEANIGEGVSSSPLSRH FT LAYHTRVCRPVGLSYEDRHTVCRYAINRIGFGYDTKNIIDLMRYLVPLPVPQRWRRRMI FT ALGSGDPTKIICSALIAQAFEAVRYPILPKITKAGSRAARREILHIRHSTLYMPRDFDI FT SPYFEVVKPTIVNGFDYTALHWADKPKPVVESDSPFASPIEGSESAPSLATQTAEADPA FT LDLAGPPKLGAVA" FT CDS 39440..40897 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0034" FT /product="possible flavin containing amine oxidase" FT /function="InterPro IPR000205:IPR002937:IPR006311 COGs FT COG1231" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDS0" FT /db_xref="InterPro:IPR003042" FT /db_xref="UniProtKB/TrEMBL:Q6NDS0" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25478.1" FT /translation="MTISRRSLLEGLLGAAAGLALLPVLGGRAGAALPREAEVVVVGAG FT AAGIAAARRIVAAGRKVIVVEAASEIGGRCVTDTTSFAAPFDRGARWLHNPDSNPLVRL FT ARSSGFAVTPVAPGQKVRIGRRNARSRETEDFLAAFVRASRAISDASRGKSDISCAAAL FT PNDLGDWAATIEYVLGPATTSKDLRALSAMDAVRTLDRTALLGCPQGVGSLLTQLASSL FT PIALSTPVKRIVWSGRDLAVETTAGRIGARAIIVTASTNVLTSGNLGFSPELPKRQLDA FT AARLSLGSIDRIALQFKGNPLGLSRDETIIERADDIRTATLVGNIGGTSLCTVDVAGSF FT GRQLAAQGEAAMQDFAIEWLGKLFGSDIAGAVERKAVTRWNEMPYVLGAMSAAEPGGQP FT SRKVLGEPLGNLFFAGEATHETLFGTVQGAWESGERAADAALKKIGAVKEPAPEKPVRK FT QKPRREPQRQREQRPPATASGTPSWWR" FT sig_peptide 39440..39535 FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.996) with cleavage site probability FT 0.865 atresidue 32" FT CDS complement(40904..43315) FT /codon_start=1 FT /transl_table=11 FT /gene="pheT" FT /locus_tag="RPA0035" FT /product="putative phenylalanine-tRNA ligase beta chain" FT /function="InterPro FT IPR002547:IPR004532:IPR005121:IPR005146:IPR005147 COGs FT COG0072" FT /EC_number="6.1.1.20" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDR9" FT /db_xref="HSSP:1B7Y" FT /db_xref="InterPro:IPR004532" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDR9" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25479.1" FT /translation="MKLTLSWLKDHLDTDEPLEKLADKLTMIGLEVEGIEDKAKVLAPF FT TIAKVLTAAKHPNADKLQVCTVDVGDGAAPVQVVCGAPNARAGLVTVFAPPGTYIPAKD FT FTLGIGNIRGVESRGMLCSAAELQISEDHDGIIELPADAPVGAAYAAWAGLGDPVLDIN FT LTPNRQDCAGVHGIARDLAAADMGKFKDPGIKPIKGEFPCPVSVTVEDSTLCPGFALRL FT VKGVKNGPSPEWLQKRLTAIGLRPINALVDITNYLTFDRSRPLHVFDAAKVKGNLVVRR FT AKDGETLLALDGRTYTLDSSVCVIADDHGVESLAGIMGGELSGCSAETTDVLIESALWN FT EINIAQSGRKLGINTDARYRFERGVDPAFMLPGLELATKLVMEFCGGTPSDVVVVGNPF FT ADDKIIDFPLAEVKRLAGIEVSLTEIRRILNHLGFTVVGQAPVVKVAVPSWRSDVHGKA FT DIVEEIVRIVGVDKVPLTPFERGDAPRKPVLTQIQNRTRRAKRALAARGLTEAVTWSFI FT SKPFAEAFGGGQPELALANPIASDLSDMRPSLLPGLIAAAQANADRGSPDLALFEVGQV FT FKGDRPQDQFMAASGVRRGVASSAGLGRHWSGSAQATALDAKADAFAVLAAAGAPMAGL FT QIATNKLPAWLHPGRSGAIQIGPQNVLGYFGELHPRVLEQLGADGPLVAFEVILEKIPD FT PKQRPTRAKPALELSAFHPVSRDFAFIVDRKVAVADIVRAAQGVDKKLITSVSVFDVYE FT GKGIDPDKKSVAIAVTLQPRDKTMTDQEIEAVAAKIVAEVTKKTGGSLRG" FT CDS complement(43460..43939) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0036" FT /product="conserved unknown protein" FT /function="COGs COG2852" FT /db_xref="GOA:Q6NDR8" FT /db_xref="InterPro:IPR007569" FT /db_xref="UniProtKB/TrEMBL:Q6NDR8" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAE25480.1" FT /translation="MDDPKQPTWNVSPSLRRHARELRKKSTEAERLMWGELRDKRLNGF FT SFKRQVPIGPYIADFACHAKKLVVELDGGQHFSDDGERSDAARTAAIEARGFRVIRFSN FT HEVMTNRAGVLQSIADVLAARVLTPTLSRKRERERAKRAAKPRSDAGAANDQGDE" FT CDS complement(44200..45282) FT /codon_start=1 FT /transl_table=11 FT /gene="pheS" FT /locus_tag="RPA0037" FT /product="phenylalanyl-tRNA synthetase, alpha-subunit" FT /function="InterPro IPR002319:IPR004188:IPR004529:IPR006195 FT COGs COG0016" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDR7" FT /db_xref="HSSP:1B7Y" FT /db_xref="InterPro:IPR004188" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDR7" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25481.1" FT /translation="MSNLENLQSQILADIAAAADEAALEAVRVGALGKKGSISALLATL FT GKMDPEQRKTEGAAINRAKEAVTDALTARRDVLKAAALDAKLAAETIDVTLPMREPAAE FT QGRLHPLSQVWDELTAIFADMGFSIAEGPDIETDDYNFTKLNFPEGHPAREMHDTFYFN FT PKEDGSRLLLRTHTSPVQVRTMLSQRPPIRVICPGRTYRSDSDQTHTPMFHQVEGLVID FT KGSHLGHLKWILHEFCKAFFEVDNVNMRFRPSFFPFTEPSLEVDIQCRRGKDEIRFGEG FT EDWLEILGCGMVHPNVLTACGLDPDEYQGFAWGMGIDRIAMLKYGMSDLRQLFEADVRW FT LNHYGFKPLDIPTLAGGLSS" FT CDS complement(45426..45785) FT /codon_start=1 FT /transl_table=11 FT /gene="rplT" FT /locus_tag="RPA0038" FT /product="ribosomal protein L20" FT /function="InterPro IPR005812:IPR005813 COGs COG0292" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDR6" FT /db_xref="InterPro:IPR005812" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDR6" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25482.1" FT /translation="MARVKRGVTAHAKHKKVYKLAKGYRGRRKNTIRTAKAAVDKAGQY FT AFRDRKRKKRTFRALWIQRLNAAVRPFGMTYSVFINGLSKSGIVVDRKVLSDLAINEPA FT AFQAIAEKAKAALAA" FT CDS complement(45869..46069) FT /codon_start=1 FT /transl_table=11 FT /gene="rpmI" FT /locus_tag="RPA0039" FT /product="50S ribosomal protein L35" FT /function="InterPro IPR001706 COGs COG0291" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDR5" FT /db_xref="InterPro:IPR018265" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDR5" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25483.1" FT /translation="MPKLKTKSGAKKRFKVTATGKVMSAQRGKRHGMIKRTKKQIRQLR FT GTRAIFKTDGDNIKKYFLPNA" FT CDS complement(46403..46981) FT /codon_start=1 FT /transl_table=11 FT /gene="infC" FT /locus_tag="RPA0040" FT /product="translation initiation factor IF-3" FT /function="InterPro IPR001288 COGs COG0290" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDR4" FT /db_xref="InterPro:IPR019815" FT /db_xref="UniProtKB/TrEMBL:Q6NDR4" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25484.1" FT /translation="MFAVNVHKCGEAPIRRPNRAPPPVAKDGPRTNDEIRNFEIQLIDQ FT TGVNQGKVETIVAIKMAMDAGMDLVEISPTSSPPVCKIMDYGKYKYSAQKKAAEARKKQ FT KIVEIKEIKLRPMIDDHDYEVKMKAMQRFFEEGDKVKITLRYRGREMAHQEIGTKLLEK FT VKNDVAEIAKVEQDPRFEGRQVVMVLAPR" FT CDS 47263..48048 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0041" FT /product="conserved unknown protein" FT /function="InterPro IPR000379 COGs COG0596" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="UniProtKB/TrEMBL:Q6NDR3" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAE25485.1" FT /translation="MTKSPEPAPDFVTVGNGAPARRIAVRARPGASPGLFWLGGFNSDM FT TGTKATALDQWAEARGRACVRFDYSGHGESSGSFADGTIGRWLEESLAVFDAYARGPQI FT LVGSSMGGWMALLLARALRRRGGDAAAKLAGLVLIAPAPDFTEALMWKGFSPEIRAEIE FT TKGVWHRPSEYGEPYPITKALIEDGRNHLVLDGMIEVGCPVRILQGKQDEDVPWRHAFE FT LAERLPTDDVVLTMIQDGDHRLSRPQDIARMLAAVEELG" FT CDS complement(48211..49323) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0042" FT /product="possible iron-sulfur cluster binding protein" FT /function="InterPro IPR001450 COGs COG1600" FT /db_xref="GOA:Q6NDR2" FT /db_xref="InterPro:IPR017900" FT /db_xref="UniProtKB/TrEMBL:Q6NDR2" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25486.1" FT /translation="MKARLAEQARALGFDAFGICAPDSIPEAPARLRAFLDAGYHGEMA FT WLADRPERRSDPRVMWSEVQSVILLGFNYGPDADPRAVLTRKDRGAISVYAQGDDYHDV FT IKARLKQFARWLVATGGGDVKVFIDTAAVMEKPLAQAAGLGWQGRHTNLVSKGRGSWMF FT LGAVFTTLDLPRDAAEGDHCGSCRACLDACPTAAFPAPYQLDARRCISYLTIEHKGPIP FT REFRARLGNRIYGCDDCLAACPWNKFAQAGREAKLAARDALRAPALGELVRLDDPSFRA FT LFTKSPVKRIGRDRFIRNALIAIGNSGDGELASEAERLLADPSPTIRGAAVWALAQLLP FT PERVATLKAVHLAAEVDDGVRAEWDWGAAE" FT CDS complement(49368..50060) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0043" FT /product="possible glutathione S-transferase" FT /function="InterPro IPR004045:IPR004046 COGs COG0625" FT /db_xref="GOA:Q6NDR1" FT /db_xref="InterPro:IPR017933" FT /db_xref="UniProtKB/TrEMBL:Q6NDR1" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25487.1" FT /translation="MYTLFHHPFCPLSRFIRLALGEHGLDLRLVEERSWERRTAFLALN FT PAGTTPVLVAEGRPPIPGAGVIVEFLDEVHGVEMGDRRLLPQSTAERIEVRRLLSWFND FT KFFEEASGPLMTERIYKRFMSEEDGGGPPAMDVIRAANANVRYHLAYIGWLARTRNFLA FT GDRMTYADLAAAAHLSAIDYLGDVPWIEDEAAKAWYARIKSRPSFRPLLSEWLAGVPAS FT RTYVDLDF" FT CDS 50260..51066 FT /codon_start=1 FT /transl_table=11 FT /gene="bacA" FT /locus_tag="RPA0044" FT /product="bacitracin resistance protein" FT /function="InterPro IPR003824 COGs COG1968" FT /db_xref="GOA:P60940" FT /db_xref="InterPro:IPR003824" FT /db_xref="UniProtKB/Swiss-Prot:P60940" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25488.1" FT /translation="MLIDIIRAVILGIVEGVTEFLPVSSTGHLLLAERFFNLGEGNFWK FT SFAVLIQLGAILAILALYFVKLWRIALGMFTDANARRFVIGVLVAFLPAAVIGAAFGGY FT IKHYLFNPWVVCFSLIVGGAILLWVDQLDLKPRYHDATAFPLLTYFYIGCAQCTAMIPG FT VSRSGASIVAAMLLGTDKRSAAEFSFFLAIPTMLGAFVYDLYKNHADMTADNLIIVAIG FT FVVSFITAIIVVKTFLTYVTRHGFELFAWWRVIVGTLGLIALALGL" FT misc_feature order(50401..50469,50506..50574,50587..50646,50683..50751, FT 50809..50865,50902..50961,51004..51060) FT /note="7 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS complement(51116..52081) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0045" FT /product="putative NADH dehydrogenase (ubiquinone) 1 alpha FT subcomplex" FT /function="COGs COG0702" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDR0" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q6NDR0" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25489.1" FT /translation="MTSNIDTLVTVFGGSGFLGRHVVSALARRDYRIRVAVRRPELAGH FT LQPLGRVGQIHAVQANLRYPESVAAAMRGSHVAINLVGILAEGGAQKFDAVQGSGAATV FT AQAAASVGARMVHVSAIGADANSPARYARSKAAGEQAVLAAVPQATIFRPSVVFGPEDQ FT FTNRFAMLARMSPVLPLVGADTKLQPVYVGDVATAIADAVDGLAKPGATYELGGPEELT FT MREIMRIILQTTDRNPLLVPLPFGLASLQAMLLQFAPGAFKLTPDQVRMLEVDNVVSEA FT AKSAGLTLQGLGIQPDSLQAIVPSYLWRFRKTGQFARKTA" FT tRNA 52242..52326 FT /gene="tRNA-Leu1" FT /locus_tag="RNA_3" FT /product="tRNA_Leu" FT /inference="non-experimental evidence, no additional FT details recorded" FT CDS 52495..53109 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0046" FT /product="3'-5' exonuclease" FT /function="InterPro IPR002562 COGs COG0349" FT /EC_number="3.1.13.-" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDQ9" FT /db_xref="InterPro:IPR002562" FT /db_xref="UniProtKB/TrEMBL:Q6NDQ9" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25490.1" FT /translation="MTIRLHRGDLPDLSRYTHSVAIDTETMGLHPHRDRLCVVQLSNGD FT GSADVVQIPQGATDAPNLKKLLGDPAVVKIFHFARFDLAALYKTFGVMPQPVYCTKIAS FT RLTRTYTDRHGLKDLVRELLGIDLSKQQQSSDWGADSLSDAQLAYAASDVLHLHALRDR FT LDTMLARENRTDLAAACFGFLPVRARLDLDGWSEEDIFAHS" FT CDS 53339..54079 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0047" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR010664" FT /db_xref="UniProtKB/TrEMBL:Q6NDQ8" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25491.1" FT /translation="MTAVQLSSYQTGMEARFAAAARHSRLVRTLRLAVPLVVVLSMAVI FT IAISIFNPFRYLSKLPIDVGDLVVSGTKITMESPHLAGFTNDGRPYEMWARTATQDLTS FT QDHVDLHTLRAKVQSEDQSTVIIESREGQFETKAQLLKLNKDVYLHNSTGTEAWMTQAD FT IDMGKGTVTSDSPVDVKWDGGTLRGQRMRITEKGDLIRFEGGVVMNIDNASLGEPPPAA FT QPAPPSTPTKPRAAPNSGQRAVAR" FT misc_feature 53432..53500 FT /note="1 probable transmembrane helix predicted byTMHMM2.0" FT CDS 54088..54753 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0048" FT /product="conserved hypothetical protein" FT /function="COGs COG1934" FT /db_xref="InterPro:IPR005653" FT /db_xref="UniProtKB/TrEMBL:Q6NDQ7" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25492.1" FT /translation="MPIAVWFRRLRGPVAFASAALVALYVGGTVPATAQSAVQGVPNAM FT QGFSQNRDKPIQIESDTLEVRDKNKEATFTGNVKVVQGDTTMTSQTLVVFYDQDQAPAK FT GAKGKPMPAAAPGPDGASSIRRLEAKGHVVVTQKDQVVTGDKAVFETKTNLVTMTGNVV FT LTQARNVVRGDRLLVDMTTGVSRVESDSGRVQGLFQSSGANGGGPLPLGPPTSSGKPK" FT sig_peptide 54088..54192 FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.998) with cleavage site probability FT 0.800 atresidue 35" FT CDS 54870..55835 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0049" FT /product="possible ABC transporter ATP-binding protein (in FT rpoN upstream)" FT /function="InterPro IPR001687:IPR003439:IPR003593 COGs FT COG1137" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDQ6" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q6NDQ6" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25493.1" FT /translation="MVDLRGMFRRRGPKAPGFGGARNDITGYGDEVGDLLTTPVRDAPP FT IARSDAYATPQQQPAAAAPPRRAAAVQPAAPQAVPASSYLAVHSVEKSFGTRKIVRGVS FT IYVRRGEAVGLLGPNGAGKTTVFYMITGLIKADNGAIELDGHDVTKLPMYQRARLGIGY FT LPQEASIFRGLTVEQNIRAVLEAVEPDKRKREAQLDNLLQEFNIERLRKSPSIALSGGE FT RRRVEIARALASRPNYMLLDEPFAGIDPIAVGDIQDLVRHLTNRGIGVLITDHNVRETL FT GLTDRAYIVYAGEILTEGTPEEIVNDPDVRRLYLGEEFRL" FT CDS 56042..57688 FT /codon_start=1 FT /transl_table=11 FT /gene="rpoN" FT /locus_tag="RPA0050" FT /product="RNA polymerase sigma 54 subunit, RpoN" FT /function="InterPro IPR000394:IPR007046 COGs COG1508" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDQ5" FT /db_xref="InterPro:IPR007634" FT /db_xref="UniProtKB/TrEMBL:Q6NDQ5" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25494.1" FT /translation="MALSQRLEFRQTQSLVMTPQLMQAIKLLQLSNLDLAAFVEDEIEK FT NPLLDRAGDNAEPPVAGEASAEGAEGGGEFGGSGGEDLGGEGTSDFVDPAGAGAFEPGT FT EEWMHRDLGSRSDIEQTLDTGMENVFPEEPAEAAARAAQDAAPASYTEWGGGASSDEGY FT NLEAFVAAESSLADHLAEQLAVAVTTPSQRLIGQYLIDLVDDAGYLPADLGDAAERLGA FT SQAEVEALVQVLQTFDPPGICARNLSECLAIQLRERDRYDPAMQALVEHLDLLAKRDVA FT SLRKICGVDDEDLVDMIGEIRHLDPKPGLKFGSSRVQTVVPDVFVRPGPDGGWLVELNS FT DTLPKVLVNQSYYSELSKTIRKDGDKSYFSDCLQNATWLVRALDQRARTILKVATEIVR FT QQDGFFTHGVKHLRPLNLKAVADAIQMHESTVSRVTANKYMATNRGTFELKYFFTASIA FT SADGGEAHSAEAVRHQIRQLIDSEDPSAILSDDTIVERLREAGIDIARRTVAKYREAMR FT IPSSVQRRRDKQNMLGTQAGAASRSRDTAPA" FT CDS 57746..58351 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0051" FT /product="putative sigma-54 modulation protein" FT /function="InterPro IPR003489 COGs COG1544" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDQ4" FT /db_xref="InterPro:IPR003489" FT /db_xref="UniProtKB/TrEMBL:Q6NDQ4" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25495.1" FT /translation="MTIRISGKSISIGEALRSRVSERTEEVLRKYFDGNYSGHFTLSKD FT GFGFRTDCALHLDSGITLEAESNAADAYVSADQALVQIEKRLRRYKSRLKDRSSRKAHA FT EANALAELSTPVDAASYVIEAPGDEEHHEDAYNPVIIAEATTAMKRLSVSEAVVELDLT FT GAPVVVFLHGSSGRVNIIYRRADGNIGWIDPPVLNGAN" FT CDS 58627..59088 FT /codon_start=1 FT /transl_table=11 FT /gene="ptsN1" FT /locus_tag="RPA0052" FT /product="putative nitrogen regulatory IIA protein" FT /function="InterPro IPR002178:IPR006320 COGs COG1762" FT /EC_number="2.7.1.69" FT /db_xref="GOA:Q6NDQ3" FT /db_xref="HSSP:1A6J" FT /db_xref="InterPro:IPR006320" FT /db_xref="UniProtKB/TrEMBL:Q6NDQ3" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25496.1" FT /translation="MTITDLVAPEAVIPALKVISKKQALQELAARAAELTGQNERTIFE FT VLLQREKLGTTAVGYGVAIPHGKLPKLEKLFGLFARLERPIDFEAMDGQPVDLIFLLLA FT PEGAGADHLKALARIARLLRDQDVAKKLRASRDAHAIYSVLALPPATAA" FT CDS complement(59691..59957) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0053" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR009531" FT /db_xref="UniProtKB/TrEMBL:Q6NDQ2" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25497.1" FT /translation="MTEAGTTHGNVGVTPEALAHLGEGHIAYVKQIRSEDVPGLFPQAP FT EIAPGLKLFALHSADGTPIMLTDSREAAIANAWSQELQAVSVH" FT CDS complement(60008..60433) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0054" FT /product="putative small heat shock protein" FT /function="InterPro IPR002068 COGs COG0071" FT /db_xref="GOA:Q6NDQ1" FT /db_xref="InterPro:IPR002068" FT /db_xref="UniProtKB/TrEMBL:Q6NDQ1" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25498.1" FT /translation="MSRVPSLSSPFLLGFDEIERALDRVVKGADGYPPYNIERCERSNG FT DPEKLRITLAVAGFTRDQLDVTVEENQLVIRGRQQDDKTRQYIHRGIAARHFQRTFVLA FT DGMQVLGADLKNGLLSIDLIRPEPERVIKTIAITEHE" FT CDS complement(60587..61678) FT /codon_start=1 FT /transl_table=11 FT /gene="ugpC" FT /locus_tag="RPA0055" FT /product="ATP-binding component of sn-glycerol 3-phosphate FT transport system" FT /function="InterPro IPR001687:IPR003439:IPR003593 COGs FT COG3839" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDQ0" FT /db_xref="InterPro:IPR013611" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDQ0" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25499.1" FT /translation="MADVVLRNVRKTYPGGFEAIKGVDFAVGDGQFCVLVGPSGCGKST FT LLRMVAGLETITAGEIEIGGRVVNDVEPADRDIAMVFQNYALYPHMTVYNNMAYGLRNR FT GMAKAEIDARVQEAARILELGPMLIRKPRQLSGGQRQRVAMGRAIVRHPKVFLFDEPLS FT NLDAKLRVAMRVEIRKLQRRLATTAIYVTHDQLEAMTLADVLVVMNGGQVEQIGSPLDV FT YAKPATTFVASFIGAPPMNLLTLAHDLRSQLSGAPPEAGILGVRPEDLVIGPGTAAQGG FT LALDITVEAIERVGPETFVYGVRAGHEARPVVAGKPGEGAGGDVIVRIPGQAAPPVGER FT ITVVAPPHGLHLFSADGRRRIAG" FT CDS complement(61681..62529) FT /codon_start=1 FT /transl_table=11 FT /gene="ugpE" FT /locus_tag="RPA0056" FT /product="sn-glycerol 3-phosphate transport system, FT integral membrane protein" FT /function="InterPro IPR000515:IPR000847 COGs COG0395" FT /db_xref="GOA:Q6NDP9" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q6NDP9" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25500.1" FT /translation="MVERRKFGNLVPHLILWIGVAIVAFPVYLAFVASTQDNATIANGQ FT MSLLPGSHFLETYYKTIFVGSSGTTREPVASMLFNSFVMAMSIALGKIAISIISAYAIV FT YFRFPFRMTIFWIIFITLMLPVEVRIYPTYKIAADLNLLDSYAGLALPLIASATATLLF FT RQFFMTVPDELLEASRIDGAGPLRFFWDTLLPLSRTNMAALFVILFILGWNQYLWPLLI FT TTRDDMQTIQIGIRKMIVTSDALTEWPIVMATAVLAMLPPVAVVVLMQKLFVRGLVETE FT K" FT misc_feature complement(order(61732..61797,61861..61926,62029..62094, FT 62134..62190,62221..62286,62434..62499)) FT /note="6 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS complement(62529..63410) FT /codon_start=1 FT /transl_table=11 FT /gene="ugpA" FT /locus_tag="RPA0057" FT /product="sn-glycerol-3-phosphate transport system permease FT protein" FT /function="InterPro IPR000169:IPR000515 COGs COG1175" FT /db_xref="GOA:Q6NDP8" FT /db_xref="InterPro:IPR000169" FT /db_xref="UniProtKB/TrEMBL:Q6NDP8" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25501.1" FT /translation="MLKHAVFQSKFLPYLLVLPQLVVVLVFFYWPAVQAVIQSFLLQDA FT FGLSTVFVWFDNYRELLEQPDYFDAIIRTFVFSFAIALSSLSLALLLAVMADRPLRGST FT FYRTMLIWPYAVAPPVVGVLWVFMLNPSLGVIAHGLRALGVDWNPLLDGDQAALLIVLA FT AAWKQISYNFLFFLAGLQAIPSSVIEAAAIDGARPMRRFWTIIFPLLSPTIFFLMIVNV FT VYAFFDTFGIIDTMTRGGPAKATETLVYKVYQDGLLGSNLGSSAAQSVILMAIVIALTA FT IQFRFVERKVNY" FT misc_feature complement(order(62550..62615,62730..62795,62877..62942, FT 63003..63068,63132..63197,63309..63374)) FT /note="6 probable transmembrane helices predicted FT byTMHMM2.0" FT sig_peptide complement(63303..63410) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.612) with cleavage site probability FT 0.593 atresidue 36" FT CDS complement(63575..64903) FT /codon_start=1 FT /transl_table=11 FT /gene="ugpB1" FT /locus_tag="RPA0058" FT /product="putative sn-glycerol 3-phosphate transport FT system; periplasmic binding protein" FT /function="InterPro IPR006059 COGs COG1653" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDP7" FT /db_xref="InterPro:IPR006059" FT /db_xref="UniProtKB/TrEMBL:Q6NDP7" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25502.1" FT /translation="MAFRSFGLTAAAATAIAATLAMAAPAYAVTEIQWWHAMTGGNNDV FT IVKLANEFNAAQGDYKVVPTYKGGYADTMNAGIAAFRAGNAPHILQVFEVGTATMMAAT FT GAVKPVYKLMQETGEPFDPKAYLPAITGYYSTSKGEMLSFPFNSSSMVMWVNLDALKKA FT DIAEIPKTWPEVFEDAKKLKAAGYATCGFSTAWVTWANLEQLSAWHNVPLASKANGLDG FT FDTKLEFNGPVQVKHLQKLIELQKDKTYDYSGRTNTGEGRFTSGECPLFLTSSGFFGNV FT KSQAKFNWTNAPMPYYPDVKGAPQNSIIGGASLWVMGGKNAAEYKGVAKFLAFLSDTDR FT QVAIHKASGYLPITKAAYEKAKADGFYKEQPYLETPIKELTNKPPTENSRGLRLGNMVQ FT LRDVWAEEIEQALAGKKTAQEALDAAVTRGNTMLRQFEKTAVK" FT misc_feature complement(64817..64882) FT /note="1 probable transmembrane helix predicted byTMHMM2.0" FT sig_peptide complement(64817..64903) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 1.000) with cleavage site probability FT 0.708 atresidue 29" FT CDS complement(65126..66331) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0059" FT /product="L-carnitine dehydratase/bile acid-inducible FT protein F" FT /function="InterPro IPR003673 COGs COG1804" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDP6" FT /db_xref="InterPro:IPR003673" FT /db_xref="UniProtKB/TrEMBL:Q6NDP6" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25503.1" FT /translation="MTSASMPGAIAGLRVIDLTRVLGGPYCTQILADHGANVIKVEPPA FT GDEVRDWGPPFHDEDAAYFLGVNRNKRSIGLDLASPGGREVLLKMLEDADVLIENFKPG FT TLDKWGLSNEVIREKFPRLVHCRISGFGADGPRGGNPGYDAIIQAMTGMIAATGSPETG FT PVRIGVPLVDITTGLYATIAILMALAERERSGKGQFVETTLYETGLAIMHPHTANYFLH FT GKPPALTGNEHPNLVPYSTFNARDGQIFTGVGNDGTFRKLCKEIGKPELGTDPRFARNK FT DRIANRAALRAELEAVFSQHDAVPLCDRLLNAGLPAGPVQTIDKALTSPHTAYRGDVIE FT KDWYKGVASPIRFERTKASLRGLPPKFSQHASEVLGEFGYSADDISKLVADGIVSGPER FT KR" FT tRNA complement(66510..66585) FT /gene="tRNA-Ala2" FT /locus_tag="RNA_41" FT /product="tRNA_Ala" FT /inference="non-experimental evidence, no additional FT details recorded" FT CDS complement(66656..67057) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0060" FT /product="conserved unknown protein" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="InterPro:IPR012644" FT /db_xref="UniProtKB/TrEMBL:Q6NDP5" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAE25504.1" FT /translation="MAKSDLGTKRICPTTGKKFYDLNKNPVISPYTGEVVPIAPVTAPR FT TRADQRSPVVDTEAPEAMEAEELVSLEEADAEENTGKVKAVVPESEDDIEIDEAIDDDD FT DDSTFIADEEEEDEDVTDIIGDVSGDEET" FT CDS 67198..68535 FT /codon_start=1 FT /transl_table=11 FT /gene="aroA" FT /locus_tag="RPA0061" FT /product="3-phosphoshikimate 1-carboxyvinyltransferase" FT /function="InterPro IPR001986:IPR006264 COGs COG0128" FT /EC_number="2.5.1.19" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDP4" FT /db_xref="InterPro:IPR016228" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDP4" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25505.1" FT /translation="MTDSNQPMPLQARKSGALHGTARVPGDKSISHRALILGALAVGET FT RISGLLEGEDVINTAKAMRALGAKVERTGDCEWRVHGVGVAGFATPEAPLDFGNSGTGC FT RLAMGAVAGSPIVATFDGDASLRSRPMRRIVDPLELMGAKVVSSSEGGRLPLALQGARD FT PLPILYRTPVPSAQIKSAVLLAGLSAPGITTVIEAEASRDHTELMLQHFGATIVTEAEG FT AHGRKISLTGQPELRGAPVVVPADPSSAAFPMVAALVVPGSDIELTDVMTNPLRTGLIT FT TLREMGASIEDSDVRGDAGEPMARFRVRGSKLKGVEVPPERAPSMIDEYLVLAVAAAFA FT EGTTVMRGLHELRVKESDRLEATAAMLRVNGVAVEIAGDDLIVEGKGHVPGGGVVATHM FT DHRIAMSALAMGLASDKPVTVDDTAFIATSFPDFVPMMQRLGAEFG" FT CDS complement(68539..69213) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0062" FT /product="conserved unknown protein" FT /function="COGs COG2121" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="InterPro:IPR007172" FT /db_xref="UniProtKB/TrEMBL:Q6NDP3" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAE25506.1" FT /translation="MATPAFVKRITRSDAVLSLGVNFSKIYFKFVMWTGRYDRQAVPIP FT EPYILAMWHGRLIMAPMLQTKSKPLVALISGHRDGKIISRVGAAFGIQTAVGSSSKGGM FT RAAREMMRLGKSGHSLFVTPDGPRGPRMRINSEGVLDMARLTGLPILPVSVSLSRHKLL FT RSWDRLMLPGLFAKVAIRFGEPITVEAGSPTAEMAERLQAALTAAQNETDRIVGLQPVE FT TA" FT CDS 69377..70015 FT /codon_start=1 FT /transl_table=11 FT /gene="cmk" FT /locus_tag="RPA0063" FT /product="cytidylate monophosphate kinase" FT /function="InterPro IPR003136 COGs COG0283" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDP2" FT /db_xref="HSSP:1KDR" FT /db_xref="InterPro:IPR011994" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDP2" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25507.1" FT /translation="MIIAIDGPAASGKGTLAKRLAAHYGFRYLDTGVIYRAVAKAMLDA FT GADLTDEARAAEVARTLDPSRFDDPALKSHAVGEAASVVSAHPQVRAALVEFQKTFAAA FT PPGAVLDGRDIGTVICPDAEVKIFVVASPEVRAHRRFLEAQSRGEPADEAVILSDIVKR FT DERDKNRSAAPLKQAPDAVLLDNSYLDIEGGVRAAIDIVEAVRAGRRRV" FT CDS 70316..72013 FT /codon_start=1 FT /transl_table=11 FT /gene="rpsA" FT /locus_tag="RPA0064" FT /product="ribosomal protein S1" FT /function="InterPro IPR000110:IPR003029 COGs COG0539" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDP1" FT /db_xref="InterPro:IPR000110" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDP1" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25508.1" FT /translation="MASTDTYNPTRDDFAAMLDESFAGGNLQESSVIKGKVVAIEKDMA FT VIDVGLKTEGRVPLREFAGPGRDNEIKVGDTVEVFLDRIENALGEAVLSRDKARREESW FT GKLEKAFQNNEKVFGVIFNQVKGGFTVDLDGAVAFLPRSQVDIRPIRDVAPLMNNSQPF FT QILKMDRRRGNIVVSRRTVLEETRAEQRQELVQNLEEGQVIDGVVKNITDYGAFVDLGG FT IDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLGMKQLLDDPWQGIEA FT KYPLNARFTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKKNMHPGKIVSTSQEVEVQ FT VLEVDSVKRRISLGLKQTMRNPWEVFVEKHPVGSTVEGEVKNKTEFGLFLGLDGDVDGM FT VHLSDLDWKLPGEQVIDNFKKGDMVKAVVLDVDVEKERISLGVKQLEGDPFAEPGDVKK FT GAVVTCEVLDVKESGIDVQIVGTDFNTFIKRSELARDRNDQRSDRFAVGEKVDARVIQF FT DKKARKVQVSIKALEVAEEKEAIAQYGSSDSGATLGDILGTALKQRDK" FT terminator 72040..72062 FT /note="TransTerm prediction, 98+%" FT CDS 72242..73222 FT /codon_start=1 FT /transl_table=11 FT /gene="sppA" FT /locus_tag="RPA0065" FT /product="putative protease IV" FT /function="InterPro IPR001687:IPR002142:IPR004635 COGs FT COG0616" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDP0" FT /db_xref="InterPro:IPR004635" FT /db_xref="UniProtKB/TrEMBL:Q6NDP0" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25509.1" FT /translation="MSLDSDVIVDRRRMRRKLTFWRVAAVLVAIVAVVAIGAMVSPAGR FT GALTSTGSIARIKIEGLIRSNDERVQALDRLGKSSYSAVIVHINSPGGTTAGSEELHDA FT LARLKAKKPMVVVVEGLAASGGYIAALASEHIVAQQTSLVGSIGVLFQYPNVSELLKTV FT GVKVEEVKSSPLKAAPNGFEPTSPEARAAIEALVKDSYAWFRGMVQQSRKMTDDQLNVV FT ADGRVFTGRQAVGLKLIDELGDERTAIAWLEKAKNVKAGLPVRDYKLAPQFGDLTFLRA FT AASVAFDAAGLGVIARRVEQTGAMQSVERLGLDGMLALWAPSAGQ" FT sig_peptide 72242..72385 FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.965) with cleavage site probability FT 0.282 atresidue 48" FT misc_feature 72299..72367 FT /note="1 probable transmembrane helix predicted byTMHMM2.0" FT CDS 73388..73702 FT /codon_start=1 FT /transl_table=11 FT /gene="ihfB" FT /locus_tag="RPA0066" FT /product="integration host factor beta chain" FT /function="InterPro IPR000119:IPR005685 COGs COG0776" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDN9" FT /db_xref="HSSP:1B8Z" FT /db_xref="InterPro:IPR005685" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDN9" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25510.1" FT /translation="MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVEL FT RGFGAFSVKHRPARAGRNPRTGAHVPVDQKTVPFFKTGKEMRERLNRDSGDDAPTSDTA FT " FT CDS 73740..74126 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0067" FT /product="conserved unknown protein" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="UniProtKB/TrEMBL:Q6NDN8" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAE25511.1" FT /translation="MQKFLTALVLIPLGLILVVFAVANRHMVDVSFDPLDPTNPLGHIR FT LPLFVVIIVTAIIGVILGGIATWFGQRRWRRAARRHQAEAIEAQNQLASLRASIATPAQ FT SEPRRLLLESGSSGAGRDKSRATL" FT sig_peptide 73740..73805 FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.997) with cleavage site probability FT 0.908 atresidue 22" FT misc_feature order(73758..73823,73881..73949) FT /note="2 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS 74185..74826 FT /codon_start=1 FT /transl_table=11 FT /gene="trpF" FT /locus_tag="RPA0068" FT /product="putative N-(5'-phosphoribosyl)anthranilate FT isomerase" FT /function="InterPro IPR001240 COGs COG0135" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDN7" FT /db_xref="InterPro:IPR001240" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDN7" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25512.1" FT /translation="MSTIVKICGLTTADTLEAAVEAGADMVGFVFFPASPRHLDIDFAD FT ALGRQVRSRAAKVALTVDADDDLLDAIVEQLRPNWLQFHGSESPERVRSIKRIYGLPVM FT KAIAVAGPDDLSVLPDYAAVADRILFDARPPKDATRPGGLGAAFDWKLLDGVNLKLPFL FT VSGGINAGNVAEALRVTRAQGVDVSSGVETSPGEKDPDLIRDFIRAARAA" FT CDS 74840..76054 FT /codon_start=1 FT /transl_table=11 FT /gene="trpB" FT /locus_tag="RPA0069" FT /product="tryptophan synthase beta chain" FT /function="InterPro IPR001926:IPR006653:IPR006654 COGs FT COG0133" FT /EC_number="4.2.1.20" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDN6" FT /db_xref="HSSP:1K7F" FT /db_xref="InterPro:IPR006654" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDN6" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25513.1" FT /translation="MNQALPNSFRSGPDERGHFGIYGGRFVAETLMPLILDLEKAYAEA FT KADPAFRAEMDNHLKHYVGRPSALYFAERLTEHFGGAKIYFKREDLNHTGAHKVNNVLG FT QIMLAKRMGKPRVIAETGAGMHGVATATMCAKFGLECVVFMGAVDVERQQPNVLRMKAL FT GAEVRPVTSGANTLKDAMNEALRDWVTNVHDTFYCIGTVAGPHPYPMMVRDFQAVIGQE FT VREQIMQAEGRLPDSLVACIGGGSNAMGLFHPFLDDPGVAIYGVEAAGHGLDKLHAASI FT AGGKPGVLHGNRTYLLMDADGQIEEAHSISAGLDYPGVGPEHSWLHDVGRVNFLSATDT FT EALDAFKLCCRLEGIIPALEPSHALAKVADLAPKLPKDHLMVVNMSGRGDKDLASVAEH FT LGGKF" FT CDS 76054..76890 FT /codon_start=1 FT /transl_table=11 FT /gene="trpA" FT /locus_tag="RPA0070" FT /product="tryptophan synthase alpha subunit" FT /function="InterPro IPR000104:IPR002028:IPR003009 COGs FT COG0159" FT /EC_number="4.2.1.20" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDN5" FT /db_xref="HSSP:1K7E" FT /db_xref="InterPro:IPR002028" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDN5" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25514.1" FT /translation="MTTRIDTRFGELKQQGRPALVTFVMAGDPDLDTSLQILKVLPAAG FT ADVIEIGMPFTDPMADGPAIQAAGLRALKAGTTLKKTLGLVRDFRATDNATPLVLMGYY FT NPIYIYGVDAFLADAKAAGVDGLIIVDLPPEEDEELCLPAMKAGLNFIRLATPTTDEKR FT LPAVLANTSGFVYYVSITGITGSASADASAVGAAVQRIKRHTNLPVCVGFGIRTPDAAQ FT AIAAQANGAVVGSALIDALKASLNAEGRATKATVGAVADLVASLAAGVRGAKQAAE" FT CDS 77000..77983 FT /codon_start=1 FT /transl_table=11 FT /gene="accD" FT /locus_tag="RPA0071" FT /product="acetyl-CoA carboxylase carboxyltransferase beta FT subunit" FT /function="InterPro IPR000438:IPR001202 COGs COG0777" FT /EC_number="6.4.1.2" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDN4" FT /db_xref="InterPro:IPR001202" FT /db_xref="UniProtKB/TrEMBL:Q6NDN4" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25515.1" FT /translation="MNWLTNVVRPKIRNILRRETPENLWIKCPDTGQLVFYKDVEQNQF FT VIPGSNYHMRMGAVARLRAIFDNETWYDVALPEVVADPLKFRDERKYADRIKDARTKTG FT AHDAVRVGFGKLETSPVVVAVQDFDFMGGSLGMAAGEAIIRGMELAVEKHAPFIMFAAS FT GGARMQEGILSLMQMPRTTVAVQMLREAKLPYIVVLTNPTTGGVTASYAMLGDIHIAEP FT GALIGFAGARVIEQTIREKLPDGFQRAEYLKEHGMVDMVVHRHDLRPTLARLCRLLTKS FT PALTVTTAVEAPAEAAAKAEPEATTTEQPGAPAPTEPPAQPAAPQA" FT CDS 77980..79308 FT /codon_start=1 FT /transl_table=11 FT /gene="folC" FT /locus_tag="RPA0072" FT /product="putative folylpolyglutamate synthase / FT dihydrofolate synthase" FT /function="InterPro IPR001645 COGs COG0285" FT /EC_number="6.3.2.17" FT /db_xref="GOA:Q6NDN3" FT /db_xref="InterPro:IPR018109" FT /db_xref="UniProtKB/TrEMBL:Q6NDN3" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25516.1" FT /translation="MSEGSAPPAPLGELRSRLTQLHPVAIDLTLGRIERLLAALGHPER FT KLPPVIHVAGTNGKGSTVAFLRAILEATELKVHAYTSPHLVRVNETIRIAGRLVGDDQL FT LTALAHCERVNAGAPITLFEIETAAALWLFAQHPADVTLLEVGLGGRLDATNVIEHPLA FT CVLTPIGIDHTEFLGPTIADIAAEKAGILRRGAPVIVAEQRDEAMEVIERDAKRLRAPL FT FACGQQWHVQLEHGRLAYQDERGLLDLTAPKLFGRHQIDNAGLAIATLRAQSRFTIPQD FT AYQAGLLAAEWPARMQRITSGKLLDDAPAGCELWLDGGHNADGGRVAAAALGDLEERVS FT RPLVLIAGMMANKDAAAFLANFTGLTRHLIAVSIPNRDGAMPPERLADAGRALGLRVEL FT ADDVRAALRRIASLAYELPPRILITGSLYLAGHVLSLNGTPPN" FT terminator complement(79431..79459) FT /note="TransTerm prediction, 98+%" FT CDS complement(79484..79804) FT /codon_start=1 FT /transl_table=11 FT /gene="trxA" FT /locus_tag="RPA0073" FT /product="thioredoxin" FT /function="InterPro IPR005746:IPR006662:IPR006663 COGs FT COG0526" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDN2" FT /db_xref="HSSP:1KEB" FT /db_xref="InterPro:IPR013766" FT /db_xref="UniProtKB/TrEMBL:Q6NDN2" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25517.1" FT /translation="MAVGKVSDADFENEVLNAQGPVVVDFWAEWCGPCRMIAPALDEIA FT GAMGDKVKIVKLNVDESPVTASKYGVMSIPTLMIFKGGEMASRQVGAAPKAKLQQWISA FT AV" FT CDS complement(79901..83386) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0074" FT /product="Possible exonuclease V and helicase activity FT based on COG assignment" FT /function="InterPro IPR000212:IPR001687 COGs COG1074" FT /db_xref="GOA:Q6NDN1" FT /db_xref="InterPro:IPR014151" FT /db_xref="UniProtKB/TrEMBL:Q6NDN1" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25518.1" FT /translation="MSRVIPNEARARQEIASDPSASVFVSANAGSGKTHVLVQRVIRLL FT LDGVSPERILCITFTKAAAANMAERVFTTLGHWVKLDDEELSAAIHATGVKTVGPSLLA FT QARKLFACALETPGGLKVQTIHALCTRLLQQFPFEANVPARFSVLDDRDQAELMQRASL FT DVLLRAAAAPESDAGRALAFAMTSAADVTFRDVVQEACMSRDRFMAWVAQAGSVERAMA FT QLSATLGVAPGDSCDAADRDIVDGPNLPRSEWAAVAATFEGGSANDQAQGRRLRAALAL FT TDAAQIEAYLQVFFTKDNGLRKSLITKKLGDGVPGLAERLQREGARLAGLLERRRALAL FT RERTRALLVIAAQVAGNIAREKRERGLLDYDDLIDKTLAMLDSGAAGWVHFKLDRGVDH FT VLIDEAQDTSPKQWKIVARLIDEFTAGEGARDGVRRTIFAVGDEKQSIFSFQGAVPKEF FT AEQRNELQRRFHGADKRFEKVAFNYSFRSGAAILQSVDHVFRDPAIYRSIHADSTYPLH FT QSLADAGPSSIDLWPLEVPDDRQQIEGWQAPFDAVSETSPEVRLADKVRAEIGALIARG FT TQTGPMGRRRPLSYGDVLILVRRRGSAFDAVIQALKRGGIPVAGADRLKLTEHIAIIDL FT MNLADALLLPQDDLALAVVLKSPLFGLDDDDLFKLAWQRKGSLRAALADHAAGDPRSAA FT VQHRLETYAARAQAETPFGFYAWLLGGDGADSGRARILRRLGPEANDALDEFLELALSF FT EQKRAPSLQGFMAWLREADTEIKRDMEISRDEVRVMTVHGAKGLEAPVVFLIDTTSSPA FT DTQRLNLIRLPGGNAAPGSVAAMVWAGRKADDPHIVEQARSAMIEETEDEYRRLLYVAM FT TRAADRLIVGGCMPGNRNEVRPHSWYDLISRGLESSGLVMQPVPPDGVIKRYCRPEDVI FT DETGAAVPSHEAVATPLPDWLRRPAPGLPSAEQVLRPSDAEDDDRRRLRPGESDASRSR FT ALQRGTLVHRLLQSLPEIAAADRPAAAGRFLARNASDWSEEDRAALAAQVLGLIADARF FT AAVFGPGSRAEVPIVGRLQWRGGPVLVSGQIDRLVVTETEVLIVDYKTNHAPPRVEAEA FT PRSYVRQLARYRAVLGAIYPQRTVRAALLWTEAAEIMELSASALDAEQADLTVP" FT CDS complement(83383..86532) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0075" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR014153" FT /db_xref="UniProtKB/TrEMBL:Q6NDN0" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25519.1" FT /translation="MHLFSVPSSAPFLRTTIAALVDGRLVEGFEARAAPERLADATLYL FT PTRRAGRMAREIFLDVLGADAVLLPRIVALGDIDEDELAFAQAASGLADLEIPPALDGL FT PRRLLLAQLIASWAARLKPDDPAQAPLVVGGPASALALADDLARLIDDMSTRGVDWSAL FT GTLVPDAFDRYWSLTLDFLKIAGHAWPQYLKETDRIEPAARRDRLIDAEAQRLATQRSG FT PVIAAGSTGSMPATAKLLTAIVRLPHGAVVLPGLDIDLDNAAWDLIGGSRDRQGKLVTP FT PSPNHPQYAMHGLLDRMGVTRRDVQQLGTPARHGRELLSSEALRPSSATAVWHDRLKDA FT EVDRLIGEGTDGLTLIEAPNSEAEALAIAVVLREAREQGKTAALVTPDRALARRVVAAL FT GRWHLPVDDSGGDSLMETQPGIFARLAAETVLEGCEPTTLLALLKHPLLRLGRAGYGWR FT GAIETLELALLRGPRPPAGCDGLAKEFAIFRGELAKLKRGEASALHPSEPRTRLSEPSL FT DEAQQLIAQLKAALAPLETVGPNPLDLCEIGAQHCAALKALTTDDDGIAEVFEGPQGSA FT LLRAFDDLAAVGPASGVLVAARDYGEVFETAFGDRVVRRPELAEAPIRIYGPLEARLTQ FT QDRVVLGGLVEGVWPPAPRIDPWLSRPMRHELGLDLPERRIGLSAHDFAQALGADEVFI FT THAAKVGGAPAVASRFLHRLEAVAGEDRWKAMKARGQTYLDYTHELDRPESVTPIAQPA FT PRPPRIARPLKLPVTAIEDWLRDPYTIYAKYILRLSPLDPVDMSLSGADRGSAIHAALG FT EFTERYQDALPDDPVTALRQIGQKHFAPLMDHAEARALWWPRFLRIATWFAAWEQQRRT FT GVVQVQAERRGTLMIPLGGERNFELSARADRIERRDDGSYAILDYKTGHPPTGKQVRMG FT LSPQLTLEAAILRDGGFEDIPAAASVSELTYVKLSGNTPPGDERVLELKIERKDEPQHP FT DDAADEARAKLEGLVRRFEDEKQPYRSLVLSMWSQRYGTYDDLARIKEWSAAGGRGDAS FT S" FT CDS complement(86608..87330) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0076" FT /product="Nucleotidyl transferase" FT /function="InterPro IPR005835 COGs COG1208" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDM9" FT /db_xref="InterPro:IPR005835" FT /db_xref="UniProtKB/TrEMBL:Q6NDM9" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25520.1" FT /translation="MTVRPHKAMVLAAGLGLRMRPLTDHMPKPLVRVAGRPLLDHVLDR FT LAEVGVTEAVVNVHYLPDQIIDHVAGRTSPRVIISDERDQVLGTGGAVVKALPLLGDAP FT FYHLNADTMWIDGVRPNLARLAEAFDPARMDILLLMAPTANSIGYAGKGDFAMSPDGSL FT HKRKETEVVPFVYAGAAIMSPAIFKDAPQGEFSLTKMFDRAGQQHRLHGLRLDGLWMHV FT GTPDAVPAAERAYLASVA" FT CDS complement(87488..87796) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0077" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q6NDM8" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25521.1" FT /translation="MVAERNKDGRVVFDRGLRAQMMAIDGTWRRPCLIEDVSELGAKLT FT VEGTVEGLNLKEFFLLLSSTGLAYRRCELSWINGDQIGVTFLRLDRKKKRAAQVENA" FT CDS complement(87900..89420) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0078" FT /product="Protein of unknown function UPF0079" FT /function="InterPro IPR001687:IPR003442 COGs COG3178" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="InterPro:IPR012180" FT /db_xref="UniProtKB/TrEMBL:Q6NDM7" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25522.1" FT /translation="MSAVATFSVALANEVATVRLMAEVALLIGPGDVVTLSGDLGAGKT FT AAARAMIRYLADDDALEVPSPTFTLVQTYDLPPYPLLHADLYRVEDPSELEEIGLSPLP FT DGTVALIEWPERAGAALPEDRIDIALSHRPALGPSARAAEITGHGKAVKQVERLAALRS FT FIETAGYADAERRHMPGDASTRSYARLQRGAESVILMNAPRRPDGPALYAGKSYSAAVH FT LAEDVRPFVAIGQGLRERGFSAPAIHHADLDAGFLITEDLGRIGFVEGDPPAPVVARYQ FT AATDMLAALHAKPLPDHLPLSTRESYAVPTFDEAAMMIEVGLMPEWYLPDRGAPPSEAL FT RVEFVALWRKLLAGIATAPRTWVLRDYHSPNLIWLEDRPGIERVGVIDFQDTVLGPAAY FT DVVSLLQDARIDVPEAAELSLLGRYVKARLAADPEFDAPGFARLYAVMSAQRNTRLLGT FT FARLNRRDGKPQYLKHQPRVWAYLARSLAHPALAEVRAWYRDHVPPPL" FT CDS complement(89417..91963) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0079" FT /product="sensor histidine kinase with multiple PAS FT domains" FT /function="InterPro FT IPR000014:IPR003594:IPR003661:IPR004358:IPR005467 COGs FT COG0642" FT /db_xref="GOA:Q6NDM6" FT /db_xref="InterPro:IPR005467" FT /db_xref="UniProtKB/TrEMBL:Q6NDM6" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25523.1" FT /translation="MSVAPCGLGQSMSGVLGSIRRTSLSCTSLVHGLAGTAVMVASSPA FT RAADDHLAAITSSLLLDLNRHEMMTLIIALAALGFSVMSAIMLVRTRQRAVAREAGLRA FT DLQGLQAESDRFQALLFAEPQVLISWAAGDSRPQVSGDTALFLPLETQSRQPQRVLAFG FT TWLPPEPALQMDHAVDALLDKGEGFLLQLVTSNGRSIEAMGRAVGGQAVVRIRELSGVR FT RELADMTRRFKALQEETEMLRGFATAAPWPIWTRRSDGTLSFANAAYARATDASDAADA FT IGRNLELLDSGDRAALARALGDGYEYSGRLPIVVGGERRYYDVRALKVSGGSAGIAVDA FT TETAALGAALERMADAHRRTLDQLSSGVAVFDAQRRLSFYNDSYRKLWDLDRIFLDSHP FT DDSTVLDRLRAERKLPEERDFKAWKNKLHEAYRAVEAEKDVWYLPDGRAVSIVTTPNPE FT GGVTYLFDDVTESLDLKRRYGGLIDVQRETLDNLSEAVAVFGSNGCAQLFNPPFARMWN FT LSAEALQSQPHIEAIEEWCRPLFDDDVFWQALRGAITGIDDRRHVLLKIERKDGSVLAC FT KTMPLPDGATMLTFQDITDTENVERALRERNEALETADRIKIDFVHHVSYELRSPLTTI FT IGFAHFLSDSSTGPLTEKQAEYVNYITTSTNALMAIINNILDLASIDAGAMTLNLGPID FT IRKAIDAAAEGIQDRLARDQIALQIDVDPAIESFVGDERRVVQVLYNLLANAIDFSPSQ FT GTVRLTVRRGETRVAFTVTDSGPGIAPAFKEKMFDLFESDPQGSRHRGAGLGLSLVRSF FT VELHGGKVLVESAVGRGTSVTCEFPIEPAAQRHAAE" FT CDS complement(92150..92608) FT /codon_start=1 FT /transl_table=11 FT /gene="dut" FT /locus_tag="RPA0080" FT /product="putative deoxyuridine 5'triphosphate FT nucleotidohydrolase" FT /function="InterPro IPR001428 COGs COG0756" FT /EC_number="3.6.1.23" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:P61911" FT /db_xref="InterPro:IPR008181" FT /db_xref="UniProtKB/Swiss-Prot:P61911" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25524.1" FT /translation="MTQKITVSIRHLPHGEGLPLPEYQTAHAAGLDLIAAVPQDAPLTL FT QPGRYVLVPTGLTIALPENYEAQVRPRSGLAAKHGVTVLNAPGTIDADYRGEIGVLLIN FT HGTEPFAIRRGERIAQMVIAPVSRAQFVAVEALPESGRGAGGFGSTGR" FT CDS complement(92605..93951) FT /codon_start=1 FT /transl_table=11 FT /gene="coaBC" FT /locus_tag="RPA0081" FT /product="pantothenate metabolism flavoprotein" FT /function="InterPro IPR003382:IPR005252:IPR007085 COGs FT COG0452" FT /db_xref="GOA:Q6NDM4" FT /db_xref="InterPro:IPR005252" FT /db_xref="UniProtKB/TrEMBL:Q6NDM4" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25525.1" FT /translation="MILRDACHKRLGFAEPASAGLSVPAPPAADEPVDGPRAQPQAGTV FT RVTLIVGGGIAAYKAMDLIRRLKERGADVRVVLTKAAQQFVTPLTASALSHQRCYTDLF FT DPSSEFDAGHIRLARDCDLIVVAPATADLMAKIAGGHADDLATAILLATNRQILLAPAM FT NPLMWNNAATRRNVAQLKQDGVAMVGPNAGEMAERGEAGVGRMAEPTEIAVAAEALWRP FT QPPKPLLGKRVLITAGPTHEPIDPVRYIANRSSGKQGYAIAAAAAAAGAEVALISGPVE FT LRAPAGVDCIRVESAREMLAAVQSALPADVAIFAAAVADWRVAAEGMQKLKKGAGGPPP FT LQLTENPDILATISKLTEGRPPLVIGFAAETENLIDNATAKLARKGCDWIVANDVSPAT FT GVMGGDRNTVHLLMRHDAATDLESWPLMTKDEVATALVARIAQAMAVHA" FT CDS complement(94104..95681) FT /codon_start=1 FT /transl_table=11 FT /gene="ubiB" FT /locus_tag="RPA0082" FT /product="ubiquinone biosynthesis protein AarF, a gene FT required for the first monooxygenase step in CoQ FT biosynthesis, recently renamed ubiB" FT /function="InterPro IPR000719:IPR004147 COGs COG0661" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDM3" FT /db_xref="InterPro:IPR000719" FT /db_xref="UniProtKB/TrEMBL:Q6NDM3" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25526.1" FT /translation="MIAALTHVARLGRAAFVFAREGVFGVVDPALIPPAGQVPVRLARL FT IERRGAKSGARLSRALTRLGPAYLKLGQFLATRPDVVGVAMARDLESLQDRLPPFSQDE FT AEQVIAISLERPVRDLFVSLSPPVAAASIAQVHRGEIELGGVRKQVAVKVLRPNVSARF FT RRDLSDFFYVAEKAELYSAEARRLRLVEVINTMSRSVAMEMDLRLEAAAASEMAENTKD FT DPDFRVPTVDWDRTSHNVLTMEWIDGIPLNDHARLKEANVDTVELGRKVIQSFLRHALR FT DGFFHADMHPGNLFLDRDGKLVAVDFGIMGRLLPKERRFLAEILLGFITRNYRRVAEVH FT FEAGYVPPHHSVENFAQAIRAIGEPIHNRLAEEISMAKLLTLLLEVTGLFDMRTRPELI FT LLQKTMVVVEGVARSFDPKLDIWKVADPVVREWIQRNLGPIGKVEGALAGAGELGHTLT FT SLPTIVSRAVTVLNQLEVMTKDGLVLAPETIAAIGRTERGRTRGRTVALWVIAATFIGV FT LIALSRMI" FT misc_feature complement(94119..94169) FT /note="1 probable transmembrane helix predicted byTMHMM2.0" FT CDS complement(95678..96439) FT /codon_start=1 FT /transl_table=11 FT /gene="ubiE" FT /locus_tag="RPA0083" FT /product="ubiquinone/menaquinone biosynthesis FT methlytransferase ubiE" FT /function="InterPro IPR000051:IPR004033:IPR004034 COGs FT COG2226" FT /EC_number="2.1.1.-" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDM2" FT /db_xref="InterPro:IPR004033" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDM2" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25527.1" FT /translation="MTEPGETTHFGYRDVPLDEKQTLVNDVFHSVAGRYDLMNDLMSGG FT MHRLWKDVMITTLNPPRDDTPFRLLDVAGGTGDISFRAAKASGAGFHSTVCDINTDMLE FT VGRQRAVERNLDDKVDFVEGNAESLQFDDRSFDAYTIAFGIRNVPRIDLALKEAYRVLK FT PGSRFLCLEFSSVDVPGLSKLYDLFSFKVIPEIGRVVTGDADSYQYLVESIRKFPKPYD FT FAEMMRDAGFARANWQVMSGGIVALHSGWRL" FT CDS 96685..97560 FT /codon_start=1 FT /transl_table=11 FT /gene="mutM" FT /locus_tag="RPA0084" FT /product="formamidopyrimidine-DNA glycosylase" FT /function="InterPro IPR000191:IPR000214 COGs COG0266" FT /db_xref="GOA:Q6NDM1" FT /db_xref="HSSP:1K82" FT /db_xref="InterPro:IPR012319" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDM1" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25528.1" FT /translation="MPELPEVETVRRGLQPAMEGFRIDRAVAHRENLRFPLQKDFVARL FT TGQTVTGLGRRAKYLLADLSSGDVLLMHLGMSGSFRVVEADGETRPGEFHYPRSEDRTH FT DHVVFEMASGARVVFNDPRRFGFMKVFPRSEIETEPHLKGLGPEPLGNAFDASLLAKAC FT AGKQTSLKAALLDQRVVAGLGNIYVCEALFRAHLSPKRKASTLANRKDEPTDHAVRLTE FT AIREVLGEAIKAGGSSLRDHRQTSGELGYFQHAFKVYDREGEPCPTCGGTVQRFVQNGR FT STFWCPKCQK" FT CDS complement(97588..98931) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0085" FT /product="unknown protein" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDM0" FT /db_xref="InterPro:IPR002477" FT /db_xref="UniProtKB/TrEMBL:Q6NDM0" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAE25529.1" FT /translation="MRSMLAATLIVAGAATLAAHGAHAAPKQTAAAPPAAQTPAETAKT FT LAQGDRQAIQSDLAWTGDYNGLINGEVSDRMIAAIKQFQTNQGHKPTGVLNPQERGQLA FT EAARKLQASVGWKLVSDPVTGARVGVPTRLVPQQASDANGTRWSSSTGTIQVALSRRKE FT ADVSIAKLADQEKKEPGRKIEYSAIKPDFFVLSGTQNQKKFYIRGSFKDAEVRILTVLY FT DQATEGTMQPVVVAMSSAYNPFPGGVQAGPPPRKKVEYSTGTIVGADGAILADREAVEG FT CLSIVVAGYGPADLADRGKEHELALLRIYGASELKPLPIGGGAAKAGAVEITGVADPQS FT QGGGAAITTVKAQLTAAGTTGGLVVTPPPSLGFSGAPARDAEGRFAGLTTLRLSLVAGA FT AESVAAPQAALISADTVRGYLAGIGVKPAEGSTKDAKASVVRVICVRK" FT sig_peptide complement(98857..98931) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 1.000) with cleavage site probability FT 0.999 atresidue 25" FT CDS 99139..99939 FT /codon_start=1 FT /transl_table=11 FT /gene="moeB" FT /locus_tag="RPA0086" FT /product="putative molybdenum cofactor biosynthesis FT protein" FT /function="InterPro IPR000205:IPR000594 COGs COG0476" FT /db_xref="GOA:Q6NDL9" FT /db_xref="HSSP:1JWA" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q6NDL9" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25530.1" FT /translation="MLSAEELERYARHIVLRDVGGPGQAALKSARVLVVGAGGLGAPVL FT MYLAAAGVGTLDIVDDDIVTLSNLQRQVIHATPDIGARKADSAASRILALNPNVRVVQH FT RVRLDGSNALALIGGCDLVLDGSDNFATRYLVSDACYLAKKPLITAALGQFDGSLTTIR FT AHERNAAGEPNPTYRCLFPEPPPAGTVPSCEEAGVMGALAGVLGSMMALEAIREIVGFG FT EGLVGRLVMIDARAMRFETLRYSRDPQNPLNGDAPTITDLSRHL" FT CDS 100064..101752 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0087" FT /product="putative Major Facilitator Superfamily (MFS) FT transporter" FT /function="InterPro IPR007114 COGs COG0477" FT /db_xref="InterPro:IPR010290" FT /db_xref="UniProtKB/TrEMBL:Q6NDL8" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25531.1" FT /translation="MAGTAKRGLFSGDGIAAPLRHALFRRIWLASLLSNLGLMINGVGA FT AWAMTQMTSSADKVALVQTALMLPIMLVAMPAGAIADMYDRRLVALAALGIGLAGATTL FT AALAHFGLVTPNTLLLFCFVIGTGMALFGPSWQASVSEQVPAETLPAAVALNGISYNIA FT RSFGPAVGGIVVAAAGAVAAFAANAVLYLPLLIVLLLWRRESEPPRLPPERLNRAIVSG FT VRYITNSPAIRIVLTRTLVTGIAGSSVLALMPLVARDLLHSGAETYGLLLGAFGIGAVI FT GALNVGIARQRLSSEAAVRLCAMIMGVAMAVVAISRSPLLTAAALVIAGAVWMLAIALF FT NIGVQLSAPRWVAGRSLAAFQASISGGIAIGSWGWGHVADLSGVAPSMLLSGLAMLASP FT VLAFLLPMPPVGTRTEDAELLADPEVKLALTSRSGPVVIEIEYRIDADEARAFHNVMQE FT VQLSRQRNGAYGWSIARDIADPELWTERYHCPTWLDYLRQRSRSTQDDRALHRRAIAFH FT RGVDPIRVRRMLERPFGSVRWKEESPDRTTATEVLPVAGVSGGST" FT misc_feature order(100142..100210,100238..100306,100325..100393, FT 100580..100648,100766..100834,100862..100930, FT 100949..101017,101027..101095,101114..101182, FT 101210..101278) FT /note="10 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS complement(101883..102101) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0088" FT /product="unknown protein" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="UniProtKB/TrEMBL:Q6NDL7" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAE25532.1" FT /translation="MLKIVGPLICLTLIAGAAQAQERRPDPGCGRDVSRLCRAVMNESD FT GAILNCLQQNRAKLSAKCAKVLTDNGQ" FT sig_peptide complement(102039..102101) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 1.000) with cleavage site probability FT 0.998 atresidue 21" FT CDS complement(102225..102566) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0089" FT /product="conserved unknown protein" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="InterPro:IPR018968" FT /db_xref="UniProtKB/TrEMBL:Q6NDL6" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAE25533.1" FT /translation="MADKNSSDVILNVMTKNLEQARGAMTNYLEFISKSMSVVPMGQSS FT QATTLKGYVDRNVQATFDFSQQLLHAKDFQDVVRIQTEFLQTQFRVLTDQAKDVVEMTK FT PTVIVPNDG" FT CDS complement(102804..103208) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0090" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q6NDL5" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25534.1" FT /translation="MQNWFIALAVAVLLLIGFAAGPMSVVVAFLAFWVTLYLVWARDLG FT FKDTWSRYGLQRVKPPFWAAENKVWFFPIFDDRAKVVKAAAVPLLIIALSLMLPTSVVR FT IGTLLVLAWYCLEIYRSQKGIDQLDRARFN" FT misc_feature complement(order(102870..102935,103086..103187)) FT /note="2 probable transmembrane helices predicted FT byTMHMM2.0" FT sig_peptide complement(103122..103208) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.999) with cleavage site probability FT 0.256 atresidue 29" FT CDS complement(103287..103628) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0091" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q6NDL4" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25535.1" FT /translation="MRSSSMILLGAIALVAALSVVNQVGVPHPALIEPAVAATPIAPPV FT SAFRTVTSSTCSSNGCPTSCEADEALISAICIGPSSAKFSDNLSLENGQMTASCGPSSS FT TIVVSCARK" FT misc_feature complement(103551..103607) FT /note="1 probable transmembrane helix predicted byTMHMM2.0" FT sig_peptide complement(103560..103628) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 1.000) with cleavage site probability FT 0.762 atresidue 23" FT CDS complement(104169..104444) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0092" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q6NDL3" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25536.1" FT /translation="MRHHYEIAVTKLIPDGATLSPPISFAAESHDDLADIIRRVTDKGL FT FDPEETKAFCVGLKLLGGVMLQHRDKELFKDFAPAFGALMKTLKAR" FT CDS 104575..105222 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0093" FT /product="transcriptional regulator, TetR family" FT /function="InterPro IPR001647 COGs COG1309" FT /db_xref="GOA:Q6NDL2" FT /db_xref="InterPro:IPR012287" FT /db_xref="UniProtKB/TrEMBL:Q6NDL2" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25537.1" FT /translation="MPRPRKQQAIDPNGENRKLRQVLAAARKLFADHGFDVTSMDAIAR FT EAGVSKATLYVHFASKDALLLALVDDECRNFGPQMLWQPDGQPIELEPALRAIARGYTS FT FFLDDRGLKLHRLVMSNAARFPQMAAVFMAAGPRRCEEEVANFLRAAVAQQLLTIPDIG FT LAAVQFLSLVQGRLQLQWELQLGRPSEADVQALIDGGIRVFLTAYRNPEVSS" FT CDS 105219..106136 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0094" FT /product="hypothetical protein" FT /db_xref="InterPro:IPR005625" FT /db_xref="UniProtKB/TrEMBL:Q6NDL1" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25538.1" FT /translation="MNNVLLLKLHRWTSLVFALPLLAIIVTGLILSVEPMLQGRGLPAG FT TLDAARLTGLIERYDPQGQARGLAINATGQQMRLLGVNAPPIDLATGEAAAASDATGDL FT LLWARRTHERLLGYEWLVIASTIAMTVLMTIGVLMGLPRLRNSLAGWHKGAAWFTLPLL FT LLSPLTALCMAFGLTFSSGPPPARMTIKLTDAVQQIAQSHDVSHLTMIANRGGRMMARI FT YEDGELRAYTFTPDGVTALPRNWPRLLHEGNWSTWLSGTLNVITSVVLIVLLITGVWLW FT TRRKLRRRPPSARSAGPVVAAPLS" FT sig_peptide 105219..105317 FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.928) with cleavage site probability FT 0.712 atresidue 33" FT misc_feature order(105252..105320,105576..105644,105681..105749, FT 105993..106061) FT /note="4 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS 106266..107411 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0095" FT /product="putative multidrug efflux membrane fusion FT protein" FT /function="InterPro IPR006143 COGs COG0845" FT /db_xref="GOA:Q6NDL0" FT /db_xref="InterPro:IPR006143" FT /db_xref="UniProtKB/TrEMBL:Q6NDL0" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25539.1" FT /translation="MSPVVRRPALALVALLAASPALAQMPGGGPPAVGTITARPQAITE FT TTEINGRIQAIGRVDLTARVNAYLQEQLFVEGAEVKKGDLLFRLEQPPFEADAEAKRAA FT VDQAQAQLDYADLALGRAEQLLKTSSGSQSTADNARAAQRTAAAQLRSAQAQLRQSEIN FT LGYTEIRSPIDGRIGRIQVTLGNVVGPSSGALATVVSQDPAYVVFPISVNRLLQLREEF FT AAQGGLEAMKIRLRLPDGRLYREVGKLQFVDVAVARDTDSIILRGTIANPPLAGGGREL FT THDEMVRVLLEGSKPREVLAIPRAAILTDQQGDYVYVVSDKNVAERRRVKLGQSTAQIA FT SVIDGLKAGDQVIVEGVQRARPNAPVTPTPAAATTALPTPR" FT sig_peptide 106266..106337 FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 1.000) with cleavage site probability FT 0.999 atresidue 24" FT CDS 107415..110564 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0096" FT /product="putative multidrug-efflux transport protein" FT /function="InterPro IPR000731:IPR001036:IPR001687:IPR004764 FT COGs COG0841" FT /db_xref="GOA:Q6NDK9" FT /db_xref="InterPro:IPR000731" FT /db_xref="UniProtKB/TrEMBL:Q6NDK9" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25540.1" FT /translation="MIADTFIDRPRLAAVIALVTTLVGALALLRIPVAQLPDIVPPQVR FT VSTTYPGASAEVLESTVAQPIEAKVVGVDKMIYMKSSSGNDGSYTLDVSFALGTNPDIN FT TVNVNNRVQNALSQLPSEVRLQGVTVQKRSSSMLQVINMSSTGQKYDQLFLTNYGLINV FT LDELARVPGVGEAALFGRYAYSMRIWFDIEKLSSLGLVPSDVVAAISAQNVQAPVGRIG FT ARPVPDDQKFQFNLQTQGRLTKPEEFGAIVLRANADGSVLKVSDVARVELGAQNADTYA FT RLNGDPTIGIGIFLAPGANAINTAAAINAKLDTLRPRFPESVQARVVYDATVFVNDTIS FT AVLHTLFEAFALVAVVVFLFLGNLRATLIPIIAVPVSLIGTFAVLIAFGTSVNTVSMLA FT LVLAIGIVVDDAIVVVENVERVMEEEPELSPADATKKAMAQVTAPIIAITLVLLSVFVP FT IGFLPGIMGELFRQFAVTISAAMLISAVNALTLSPAMCALFLRHEGQRRGFMQKVGRGI FT DRARDGYTSTVRIALRRPALSVLAVAACGAGIWGLSLTTPSGFLPEEDQGAFFINVQLP FT DGASVARTEATVIEVEKIVKQMPEVRDVLSIVGLSLLDNYSASNNAFMIVQLKPFADRK FT AASSSAQTLIGKTFGATQAVRTATVLPFNLPPVVGLSTAGGFQYQLESLEGAEPAAIAG FT VTNGLVAAGNQNPLLTRVFSTYNANAPSLYLDIDREKAQSLGITINDIFSALQISLGGL FT YINNFNLFGRTWQVNLQGDASARRDLPNLWDIYVRNTKGAMVPLQSIATVRTVTGPAVI FT TRYNNYRSVTINGSPAPGVSSGTAMAAMAEVSAKTLPPGYAFEWTGTAYQEHEAVGKTG FT YILALAVIFAYLFLVALYESWVIPVPVLLSVSIAVLGAFAGILVGRVTLDLYAQIGLVV FT LIALAAKNGILIVEFAKEQREAGLSIKAAAEMGAKLRFRAVMMTSIAFILGLVPLVWAD FT GAAMLARRNLSTPVFAGMLTASLIGIILIPMLYVVFQSLREKVAEPGVLTPLSLKRLLK FT R" FT misc_feature order(107448..107516,108429..108497,108516..108584, FT 108597..108656,108735..108803,108846..108914, FT 109002..109070,110022..110081,110100..110168, FT 110181..110249,110310..110378,110421..110489) FT /note="12 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS 110707..111117 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0097" FT /product="putative flagellar basal-body rod protein flgC" FT /function="InterPro IPR001444 COGs COG1558" FT /db_xref="GOA:Q6NDK8" FT /db_xref="InterPro:IPR019776" FT /db_xref="UniProtKB/TrEMBL:Q6NDK8" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25541.1" FT /translation="MSAIASIAVSGLNAATRRLEVSASNIANQRSTGALPGADGTVPPG FT APQAYKPLQVNQTDTPTGGTQTSLATTSPATVPVSDPQAPFADADGMVAAPNVDLAQEF FT IGQMVAKYSYTANLASLQADRDMTKALLDAKV" FT CDS complement(111260..112318) FT /codon_start=1 FT /transl_table=11 FT /gene="oppF" FT /locus_tag="RPA0098" FT /product="oligopeptide ABC transporter (ATP-binding FT protein)" FT /function="InterPro IPR001687:IPR003439:IPR003593 COGs FT COG1124" FT /db_xref="GOA:Q6NDK7" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q6NDK7" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25542.1" FT /translation="MMIHEDLRPADGDPYLLDVNDLVVHFRTGRKRPWDKPSFVHAVDG FT VSFRVKRGTTFGIVGESGSGKSTTAQAIMRLVQATSGQVVFRGEDIMPLTGEPLRKARK FT HLQIVFQDPFSALDPRRRAGDQIREPLDLLEIGSRSERDARVRKLLAEVGLPPEAADLF FT PHQFSGGQRQRLCIARALAPEPELIVCDEAVSALDVAIQAQILNLLKKLQRERGLTYIF FT ISHDLGVIQQFCDEIAVMYLGKIAEQAPASALFTAPRHPYTWSLVSAAVPPGPLRDELK FT AKYLVKGEPPSPVDPPPGCRFAQRCPFAEARCRAELPFLDAAGHEHYVACHRKDEIGVP FT DFAPRVASGPIG" FT CDS complement(112315..113313) FT /codon_start=1 FT /transl_table=11 FT /gene="oppD" FT /locus_tag="RPA0099" FT /product="putative oligopeptide ABC transporter FT (ATP-binding protein)" FT /function="InterPro IPR001687:IPR003439:IPR003593 COGs FT COG0444" FT /db_xref="GOA:Q6NDK6" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q6NDK6" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25543.1" FT /translation="MVPVLSVENLSVSMTNRDGDLVPVLENLSFTVQKGRTIALVGESG FT CGKSMTALAIMRLLPEGFVVTGGRIVLDGEDLLTARPKRMRALRGDAMSMVFQEPMTAL FT NPLYTVGDQIAEVLYYHRRLSRKDAAEQAVQFLKAVQIPAAEQRAKAYPHQMSGGMRQR FT VMIAMALACRPKLLIADEPTTALDVTVQAQIFDLLAQLQDETEAAIVLITHDLGAVAEL FT ADDIAVLYAGRCIETGPAHEIAARPRHPYTRGLLGCVPHLTIGVAKPEEWVDLGEIPGM FT VPALGNRGPDCAFLARCANASEACRSRPQPPLGTIAAGHAVSCWRAEEIAA" FT CDS complement(113316..114197) FT /codon_start=1 FT /transl_table=11 FT /gene="oppC" FT /locus_tag="RPA0100" FT /product="putative ABC transporter permease protein" FT /function="InterPro IPR000515 COGs COG1173" FT /db_xref="GOA:Q6NDK5" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q6NDK5" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25544.1" FT /translation="MAQKPLPSVSKVPKAVSPARAALRQFMKSPSGVAGALLLLLLLAG FT TALGPWLYPVDPLDIVGLPFAAPAADAPLGTDYLGRDVLAGLIYGGRATLTVGAVAALI FT TIVIGVTVGALAGFFGGWVDALLVKIAEFFQVLPPLLFAMVLVTLFGPKLSTITLAIGA FT VSWTSAARLTRAEFMRLRDLDFIKASRAAGAGSLHLILRVVLPNALPPIIVSATLAIGT FT AILFEGGLSFLGLGDPNTMSWGLMIGQNRNYVLDAWWAVTFPGAAIFLAVLAVSLVGDG FT VNDAVNPRLRRR" FT misc_feature complement(order(113361..113426,113496..113561, FT 113706..113771,113832..113897,114033..114098)) FT /note="5 probable transmembrane helices predicted FT byTMHMM2.0" FT sig_peptide complement(114048..114197) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.776) with cleavage site probability FT 0.519 atresidue 50" FT CDS complement(114221..115201) FT /codon_start=1 FT /transl_table=11 FT /gene="oppB" FT /locus_tag="RPA0101" FT /product="putative dipeptide transport system permease FT protein 1" FT /function="InterPro IPR000515 COGs COG0601" FT /db_xref="GOA:Q6NDK4" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q6NDK4" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25545.1" FT /translation="MALLTHLFGKLANAVALLLAVLVMNFCLIHLAPGDPVQVIAGEMG FT GASPEVIAALRAKYGLDHSLLEQMFTYLGKVAHGDFGYSYYFNQPVLGLILQRLPATLY FT LAAASLVVAVLIGTVLGVISARRPNGLLSHGVTVLALAGHAAPIFWTGLLLLLLFGSVW FT PILPVNGMTDVVNPKTGFAYAADVAKHLVLPSITLGLVFVAQYSRLARVNMIDVLSADY FT IRTARAKGLPERVVLVKHALRNTLIPIVTVVGLQFGNLFAGAVLVETVYSWPGMGRLVF FT DSILRRDYPTLMGVLFFSAVMVIAANILTDLVYRLIDPRIRAGAR" FT misc_feature complement(order(114263..114328,114389..114454, FT 114590..114655,114701..114766,114830..114895, FT 115100..115165)) FT /note="6 probable transmembrane helices predicted FT byTMHMM2.0" FT sig_peptide complement(115097..115201) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.745) with cleavage site probability FT 0.418 atresidue 35" FT CDS complement(115230..116831) FT /codon_start=1 FT /transl_table=11 FT /gene="oppA" FT /locus_tag="RPA0102" FT /product="putative ABC transporter oligopeptide-binding FT protein" FT /function="InterPro IPR000914 COGs COG0747" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDK3" FT /db_xref="InterPro:IPR000914" FT /db_xref="UniProtKB/TrEMBL:Q6NDK3" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25546.1" FT /translation="MMLTKRSFVVGALGGIALMGLPFETKAEGAGSGGTLVIGSTQVPR FT HFNGAVQSGIATALPSTQIFASPLRYDDNWNPQPYLAESWDVSKDGLTVTLKLVKNATF FT HDGKPVTSEDVAFSIMTIKANHPFKTMLAAVESVDTPDPHTAVIKLAHPHPAMLLAMSP FT ALMPILPKHVYGDGQDVKSHPANLKPIGSGPYKLTEYKQGDYYTLEKFDKFFIPGRPKL FT DKIVVRLISDPNALMVSAERGDVHMVPYFTGVRDIERLEKAPNVVVTDKGFAGIGALNW FT LAFNTKKKPLDDVRVRQAIGYAANREFIVKKLMGGKALPSTGPIAPGSPLEEKNVDQYK FT FDIAKANKLLDEAGLKPDGAGVRTTLTIDYIPGNDEQQRNVAEYLRSALKRVGINLEVR FT AAPDFPTWAQRVASFDFDLTMDTVFNWGDPVIGVDRTYLSSNIRKGIIWSNTQQYANPK FT VDEILGQAAQESSSDKRKALYSEFQKIVVEDAPIFYINATPYHTSFAKGLGNLPTTVWG FT VASPLDELYWVTPPKN" FT sig_peptide complement(116748..116831) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.938) with cleavage site probability FT 0.717 atresidue 28" FT CDS complement(116921..117877) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0103" FT /product="Cobalamin synthesis protein/P47K" FT /function="InterPro IPR001687:IPR003495 COGs COG0523" FT /db_xref="InterPro:IPR011629" FT /db_xref="UniProtKB/TrEMBL:Q6NDK2" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25547.1" FT /translation="MTAASATISVTVIGGFLGAGKTTFVNHLLRSGGPRTAVLVNDFGE FT VNVDATLIQSHDGTTMTLTNGCICCSMGTSFIDTMCQVLDAAVPFERIVIEASGVGDPW FT KIAEIALIEPSLRLDRVIVLADASRIAQLIEDSKVGDTVRGQFERCDIVLLNKTDLVNA FT EALAAARTAVRSLRPDVGIVATVQDAMPTLAELETAASSSGFRADAVEAAAIDHGATFK FT SWAYRRAGRFDRARLACAVDKLPPQLLRLKGSCRLAGEDDVKVFQMVESVWSLSPADAG FT PAEPGIVLVGVGTADLPPPAELDAILDRALAPAGALS" FT CDS complement(117874..119517) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0104" FT /product="Amidohydrolase" FT /function="InterPro IPR006680 COGs COG1574" FT /db_xref="GOA:Q6NDK1" FT /db_xref="InterPro:IPR013108" FT /db_xref="UniProtKB/TrEMBL:Q6NDK1" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25548.1" FT /translation="MTSETVVYSARKIITMNPSRPSATHVAVRDGRIVATGSADELMVT FT GARLDPRFADKVLMPGFVEGHSHIMEGLMWKQPYVGAFDRRSPEGKVVAGVPDIEAIVA FT RLQQAEAALPNDGSPLYAWGFDPLHIGGKMLTRQDLDKVSTKRPVLVVHASFHINNVNT FT LTLERAELLHATNISGVVAGADGLASGELQGIPARMRLFRALGHNPLAGTITEADVRRY FT AASCCVQGVTTITDLHNDLADPTIEVYRSATSQADFGVRLVPALAAVSHTPEQAIAKLE FT TLRGHASDKLHYGIVKLVVDGSIQGFTARLRWPGYHNGAANGLWYIAPEELPRLVEAYH FT RAGVQLHIHTNGDEATEVALDAIEAAQTVAPRPDHRHTLQHCQMASAAQFRRMKNLGVC FT ANLFANHLYYWGDAHYELTMGPERAARLDATGTAQRIGVPFAIHSDAPVTPLAPLFTAW FT CAVNRVSSSGRVLGRDTEALTTEQALAAITIGAAYTLKMDHLVGSIETGKYADFVVLDE FT DPLAVPPERLKEIAVWGTVVGGMIKEAPRA" FT CDS 119756..121297 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0105" FT /product="transcriptional regulator, GntR family with FT aminotransferase domain" FT /function="InterPro IPR000524 COGs COG1167" FT /db_xref="GOA:Q6NDK0" FT /db_xref="InterPro:IPR015421" FT /db_xref="UniProtKB/TrEMBL:Q6NDK0" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25549.1" FT /translation="MARTPNGGAIACSDAAALGKDELFWGALFRGLNRGGSFLQLQIRQ FT IIVTAIEDGRLPLGMKMPSSRDLATVLKVSRNTVVIAYEQLVDQNFLVSRQRSGYFVAG FT LPKKFATEAPGLAEVTSRGDEHWVDRFAVRPSAHRNIVKPLDWQTHPYPFIFGQFDPSL FT FPTNDWRESARAALSVPEINNWARDLIDGDDPALIEQLQLQVLPRRGIHARADEIMMTI FT GAQHALYLIATLFINGQTKVGIEEPGYPDARNIFRMLTPNVVPLSVDSEGVVPDAMFQS FT CALAYVTSSHQCPTAVTMPLPRRIELLKAAATGDVVVVEDDYEGELMPESATLPPLKSI FT DRASNVLYVGSLSKALAPGLRLGYVVAPAPVIRELRALRRLMLRHPPLNNQRVAALFIG FT LGHYRAHLAQVGRVLLERAKLLDQLLPKHLPSCSFSRGPGSTNFWVTCPTSIDATALAE FT AALEQGVVIEPGAVFSMDETASRHCFRLGFSSIRTDRIEVGIQRLGEVIAQHLKA" FT CDS complement(121313..122521) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0106" FT /product="possible branched-chain amino acid transport FT system substrate-binding protein" FT /function="COGs COG0683" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="InterPro:IPR001828" FT /db_xref="UniProtKB/TrEMBL:Q6NDJ9" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25550.1" FT /translation="MTVMDRRCFLLGTATTMLVATSMKAQAADTTGITPTSIRIGSTSP FT QSGPVSAYGVQARCQAAYFKMINDRGGIAGRKIDFIYYDDAFNPAKTVEQTRKLVESDE FT VALLFSNLGTATNSAIVKYANAKKIPHLFLSVNGDKWSDYKAHPWSIGFAPSARTEAAI FT FVKHMLAEKPDAKFAVLYQNDDFGKDFVLGAKDVLGERESRQLVTISHETSDPTIDSQI FT LQLRAAAPDALISGTTAKFTAQAIRKVAETRWQVRHYITGGSSSYAGTIGPAGPENAVG FT VISSAYLKDVADPAWKDDQGIKDFLAFMQSYFPEGNKDDFYNLYAYTVASALVKVLTQC FT GDGWTRENIMAQATNLKDVELPTLLPGIRVNTSPTDYRPLTQVQLQKWDGKAWVRFGDV FT LGA" FT sig_peptide complement(122438..122521) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 1.000) with cleavage site probability FT 1.000 atresidue 28" FT CDS complement(122541..123581) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0107" FT /product="putative Zn-binding dehydrogenase" FT /function="InterPro IPR000205:IPR002085 COGs COG1063" FT /db_xref="GOA:Q6NDJ8" FT /db_xref="InterPro:IPR013154" FT /db_xref="UniProtKB/TrEMBL:Q6NDJ8" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25551.1" FT /translation="MKAAVFEKTGERLVVRDVAAPALGDNELLLKVAFTGICGSDLHAA FT ETPGMLQSGTVMGHEFTGEIVQSTASDWPVGARVAANPYWLCDACAAGGSCSGGGDAAC FT ANGSFMGFRPDLPGAYADYVRIRAGQAIRLPDKVSLRDGALMEPLAVARHAVDVCGPMQ FT GADVLVIGGGPIGLGVVLMARDAGAARVVVSEPDPNRRACALEVGAVAAIDPIAEDLPT FT ALGRLGIGAPGIVFECVGAPGFLQQTIDVMALRGRAVIVGVCMTEDRVLPRAAIRKEAT FT LKFVLGYTMADFHHVSRYLEEHAATAAAMISRVVSLSELPEIFDRLRAEKSLIKVLVRP FT DQGSGT" FT CDS complement(123611..125359) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0108" FT /product="Possible benzaldehyde lyase" FT /function="InterPro IPR000399 COGs COG0028" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDJ7" FT /db_xref="InterPro:IPR000399" FT /db_xref="UniProtKB/TrEMBL:Q6NDJ7" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25552.1" FT /translation="MSAATSSAGDWLEGGELLARTLRDAGVDTVFALHGGHLESFYRGC FT IANDIRLVDFRHESSAGHAADGYARATGKLGVCVITAGPGFTNGVTAILNAQLDSIPTL FT FIVGSPPLREAETNALQGGVDQIAVTLPMVKYAHRITNTERIPDLTALAIRKATTGRRG FT AVLLDVPIDVLHMRAHKDDVRPAHGLNINPRPAPHPDEIKAAIAILKASERPVIVVGGE FT ARYSNCRDDLVALAEATQIPVVSNTRGMGVFPSSHPLNGQVVGNLALLSARRPDAALLL FT GTRFGFRLAGRSTAFFPDDAKLIQVHSDAAELGRLRHVELPIVADVGAALTTLRTAAAA FT ETWPQRPAWIEAVTKAPAKMLDMFPNKQGPKGIHPFWAAEAAVRAAGPDAAIVLDGGEA FT ASWAAFHLRSNQPGHVQGVGYLGCLGTGPGQSIGAQLVDPDKRVMQITGDGAMGFHIQE FT FDTMSRHRLPICTIVLNNEIWGMSIHGQQIMYGANYSAISELRGTNYASVAAAFGCHAE FT RVTEFDEIEPAIARAYASGQPSCIEIMIDPDVVHPVTVAALGTISDEKREIMIPYYENI FT PIRPQA" FT CDS complement(125400..126188) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0109" FT /product="putative 3-oxoacyl-(acyl carrier ptn) reductase" FT /function="InterPro IPR002198:IPR002347 COGs COG1028" FT /EC_number="1.1.1.100" FT /db_xref="GOA:Q6NDJ6" FT /db_xref="HSSP:1AE1" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q6NDJ6" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25553.1" FT /translation="MRFNGKVAVVTAAASGIGAATAARLAREGAYVYLSDIDQDALGRQ FT AESLVDVAERISTVVADVTVPEQVSALIDGAARERGRLDILINNAGMGAFGRITEVTPE FT AWHRVFGICVDSIFHASRAAIPHLIKARGTIVNTASISGLFGDYGFAAYNAAKGAVINL FT TRNMALDYSRDGLRVNAVCPGLIATPLSLKLRDNAAVMAEYDRLIPLGRAGSPEEVAGA FT IAFLASDDASYITGVAFAVDGGLTARTGQPNFLGHLAPKP" FT sig_peptide complement(126120..126188) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 1.000) with cleavage site probability FT 0.926 atresidue 23" FT CDS 126389..127051 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0110" FT /product="probable transcriptional regulator, TetR family" FT /function="InterPro IPR001647" FT /db_xref="GOA:Q6NDJ5" FT /db_xref="InterPro:IPR012287" FT /db_xref="UniProtKB/TrEMBL:Q6NDJ5" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25554.1" FT /translation="MPPREQTREELRQKIIAGARALLSETESAEFSMRALAARANVAHM FT TPYNVFGSKQAVLLAVLDADMADFTRAVQERDVADPLSELYEVVGLCAEFWFSEPVFYK FT TLYRELLDLKGAPHQATATPLRDGFWRRLTHALAEQGYLQSFVAEEPLSMNLRRIALQA FT ISVWIARDLSKREVEAELGYSISLALLGVTAPASSSLVLTRLLNYQAIIEEAGARDG" FT CDS complement(127104..127892) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0111" FT /product="DUF81" FT /function="InterPro IPR002781 COGs COG0730" FT /db_xref="GOA:Q6NDJ4" FT /db_xref="InterPro:IPR002781" FT /db_xref="UniProtKB/TrEMBL:Q6NDJ4" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25555.1" FT /translation="MHELIAEASASFLSTLPSPMAIVGVLSAVLAAALLRGFTGFGFAL FT AAVPLMGMFMPPAKAVPVAVLLQLLGGLNDLRRNHRDAHWASLRWLIVGAVIGSPIGAL FT ALSVAPAPVARIVIATITAAAVVVLGRGFAIEKIPSRPVTTAVGMLCGLFNGLAAMPSP FT PAIVYYMSGPFRAVAVRASLLVFFLATSIAGFTSIALVGLATVNVLWLAAMALPVMMLG FT TWIGEQGFRRGTERLHRRVSIASLGGVALLSAAKGLSELM" FT misc_feature complement(order(127203..127268,127290..127355, FT 127386..127451,127488..127553,127566..127631, FT 127692..127757,127788..127853)) FT /note="7 probable transmembrane helices predicted FT byTMHMM2.0" FT sig_peptide complement(127710..127892) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.921) with cleavage site probability FT 0.417 atresidue 61" FT CDS complement(127901..129412) FT /codon_start=1 FT /transl_table=11 FT /gene="betB" FT /locus_tag="RPA0112" FT /product="putative betaine aldehyde dehydrogenase" FT /function="InterPro IPR002086 COGs COG1012" FT /EC_number="1.2.1.8" FT /db_xref="GOA:Q6NDJ3" FT /db_xref="HSSP:1AG8" FT /db_xref="InterPro:IPR016162" FT /db_xref="UniProtKB/TrEMBL:Q6NDJ3" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25556.1" FT /translation="MINIATRINPAIAPAVSEVISQLQARHLIGNTLVPSVGGATLDVI FT DPATGQVIGKAPAASGDDVARAVEAASAAFPGWAATPARQRGKLIAAAASAIAERSDVI FT ATVLALETGKAIRTECRGEVATAIDITTMYAGLASELKGETLPFDPQILTYTSREPLGV FT VAAILPWNVPLVLMMLKIAPALVAGNTVVVKASEEAPYATIEMARLMARLLPDGVLNVI FT CGTGRDCGAALVEHPAVAKVTFTGSQAVGELIYQMAAKKIIPVSLELGGKSPMIVYPDA FT DMARVVAGAIAGMRFTRQGQSCTAASRIYVHTTLIDAFVAALREAVSKLKIGDPLDEAT FT DIGTVISPRQKAKVESYIDLGARTAGAKVDRCGELPGAAHLKDGLFLQPTIITGVPEDS FT PLMREEIFGPVVCVQPWDDEDDVIARANDSDFGLAATVWTNDLRSALRTVQRLDAGYVQ FT VNQNLTIQPNLSYGGFRKSGLGKEASLEAMLEHFTKKKTVVIDMR" FT CDS 129624..130031 FT /codon_start=1 FT /transl_table=11 FT /gene="tauX" FT /locus_tag="RPA0112a" FT /product="taurine dehydrogenase small subunit" FT /EC_number="1.4.99.2" FT /note="Bruggemann et al., Microbiology (2004), 150, FT 805-816." FT /db_xref="GOA:Q6NDV4" FT /db_xref="InterPro:IPR009959" FT /db_xref="UniProtKB/TrEMBL:Q6NDV4" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAG26862.1" FT /translation="MSDLDTQRLQTLDQLFDAFNRHDGAAVMAAMTDDIVFDAAAGPEA FT CGRRIVGTADVRAAFETTFTTFPDVSWECTRHAVFGDRGISEWIFRATTKDGGRIEAEG FT VDLFGFRGNKICSKSAFRKDRPVLPPTGASA" FT CDS 130028..131422 FT /codon_start=1 FT /transl_table=11 FT /gene="tauY" FT /locus_tag="RPA0113" FT /product="taurine dehydrogenase large subunit" FT /EC_number="1.4.99.2" FT /note="Bruggemann et al., Microbiology (2004), 150, FT 805-816." FT /db_xref="GOA:Q6NDJ2" FT /db_xref="InterPro:IPR006076" FT /db_xref="UniProtKB/TrEMBL:Q6NDJ2" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25557.1" FT /translation="MNKPVKTPPLAAYDPHYDPLVSEGPGRNRDYAPTYWTATCGPLPE FT DDGPISRDTDVDVAIVGSGFTGLASAVFLAREHGIKAAVLEANRVAWGCSTRNGGQGQN FT AAGRLTRSQWIERWGRDVALKLHAEISDGFETFEELIRQSPIDSEPQRGGHLYIAHRQR FT NFEKIAAEAKVLSEVFGEPTKVISADELRRDYVNEAEAVGATLEPRGTGVHPAKLAFGY FT QQMARDLGATVHPGSPVIEIEHRGGAFYLRTPGGTVKARAVGIATGAYTAPGLTPLLRG FT RCMPILSNSIVTRPLTPAELEATGFKTKLVLTDTRTLRYYYRLLPDNRIQIGSRSSITG FT ADADAPKHLQLLIDGLHRKFPALQGIEIDYSWWGWVDVSHDMMPRIFQPDPAQKLVYAL FT GYGGNGVSYSAQAGRRMAQMIAGQRFKGQDLPIFTSPLPTHSFSPFRRIGQRMLYRWYH FT FRDEAA" FT terminator 131468..131490 FT /note="TransTerm prediction, 98+%" FT CDS complement(131546..131899) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0114" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q6NDJ1" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25558.1" FT /translation="MHPFRWQRSRQRSSALSFLKKAFYQIPVIGWLVKDAAHGSPEAPY FT FFLFNAVVVGAALIYTFGYPLVITVAVAGAFAGIAGLVVLTAGDAFDKRAKQPATDVRR FT AKTATVRPLKKAA" FT misc_feature complement(order(131636..131701,131714..131770)) FT /note="2 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS 132242..132388 FT /pseudo FT /codon_start=1 FT /transl_table=11 FT /gene="rmlB pseudogene" FT /locus_tag="RPA0115" FT /product="dTDP-D-glucose 4,6-dehydratase" FT /function="InterPro IPR001509:IPR002198, COGs COG1088" FT /note="pseudogene, N-terminal portion of a gene disrupted FT by an inversion" FT /inference="non-experimental evidence, no additional FT details recorded" FT misc_feature 132242..133303 FT /note="pseudogene, disrupted by an internal inversion" FT CDS complement(132389..132900) FT /pseudo FT /codon_start=1 FT /transl_table=11 FT /gene="rmlB pseudogene" FT /locus_tag="RPA0116" FT /product="possible dTDP-D-glucose-4,6-dehydratase" FT /function="InterPro IPR001509:IPR002198 COGs COG1088" FT /note="pseudogene, this segment is inverted with respect to FT the N- and C-terminal ends of the original gene." FT /inference="non-experimental evidence, no additional FT details recorded" FT CDS 132902..133303 FT /pseudo FT /codon_start=1 FT /transl_table=11 FT /gene="rmlB pseudogene" FT /locus_tag="RPA0117" FT /product="dTDP-D-glucose 4,6-dehydratase" FT /function="COGs COG1088" FT /EC_number="4.2.1.46" FT /note="pseudogene, C-terminal portion of gene disrupted by FT an inversion" FT /inference="non-experimental evidence, no additional FT details recorded" FT CDS 133329..133886 FT /codon_start=1 FT /transl_table=11 FT /gene="rmlC" FT /locus_tag="RPA0118" FT /product="dTDP-6-deoxy-D-glucose-3,5-epimerase" FT /function="InterPro IPR000888:IPR006010 COGs COG1898" FT /EC_number="5.1.3.13" FT /db_xref="GOA:Q6NDJ0" FT /db_xref="InterPro:IPR014710" FT /db_xref="UniProtKB/TrEMBL:Q6NDJ0" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25562.1" FT /translation="MLTVTSTAIEAVKIITPRAFADSRGSFVETYNRQRFVDHGVALEF FT VQDNQSISAAVGTVRGLHFQSAPFAQDKLVRVAKGRILDVAVDLRRSSPTYGQWVAEEL FT SAEDGKQLLIPIGFAHGFCTLEPDTVVAYKVTNYYSPPHDLGIAWNDPDLAVRWPVTAD FT QAVLSDKDLELPPFASLPNYFE" FT CDS 133891..134784 FT /codon_start=1 FT /transl_table=11 FT /gene="rmlD" FT /locus_tag="RPA0119" FT /product="putative dTDP-6-deoxy-L-mannose-dehydrogenase" FT /function="InterPro IPR005913 COGs COG1091" FT /EC_number="1.1.1.133" FT /db_xref="GOA:Q6NDI9" FT /db_xref="HSSP:1KBZ" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q6NDI9" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25563.1" FT /translation="MRIVVTGRHGQVAQALYERAAGTNAEIVLLSRPEIDLTRQSDIET FT ALSAVKPDAVVNAAAYTAVDQAESEPDLAYAINAEGAGAVARAAAKLGVPMVQLSTDYV FT FDGTAEQPYRETDPTNPLSVYGASKLAGERAVAKATPDHAVLRTSWVYSPFGKNFVRTM FT LALARQRDEVRVVWDQVGSPTSALDIADGVLGVVRNLLAEPTRSDLRGIFHMTADGTAT FT WAAFAEAIFAASRAAGGPSAKVIPIPTTEYPTPAKRPTNSRLDSSALAAAHGIRLPHWR FT QSLQPCIERLLAQDAN" FT CDS 134786..135661 FT /codon_start=1 FT /transl_table=11 FT /gene="rmlA" FT /locus_tag="RPA0120" FT /product="glucose-1-phosphate thymidylyltransferase" FT /function="InterPro IPR005835:IPR005907 COGs COG1209" FT /EC_number="2.7.7.24" FT /db_xref="GOA:Q6NDI8" FT /db_xref="InterPro:IPR005835" FT /db_xref="UniProtKB/TrEMBL:Q6NDI8" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25564.1" FT /translation="MIIKGIILAGGSGTRLHPMTAAVSKQLMPIYDKPLIYYPLATLMM FT AGIREILVISTPADLPRFQQLLGDGASWGMSFSYAEQPKPEGLAQAFVIGADFVAGQPS FT ALVLGDNLFYGHDLIPLLQNAAQHPEGATVFAYQVSDPERYGVVEFDTNQVARSIEEKP FT AQPRSNWAVTGLYFYDQDVVEIAANLKPSARGELEITDVNRAYLERGKLRVEKMGRGFA FT WLDTGTPDSLLDASEFVRVLEKRQGFKICCPEEIAFRFGWIDTRQLERLAQPLAKSNYG FT GYLLKLAANP" FT CDS 136107..136643 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0121" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q6NDI7" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25565.1" FT /translation="MAEEQPLAWHRAELDLAQHHPAGRAGAVRTARPRSVSDRPGRSVR FT AARHPGRLWLRPHYRAAERALVSVGRLHHDAVLRGRDLPLDFGQDWFLGLDTGGGNWGP FT LYSKLDLAKLQQSPSRFVPYREGLATYDGPFQWCGSWLHEVGQMGEPEIMRDKRRVVVD FT LLTPHLEAARNLPPR" FT CDS 136734..139013 FT /codon_start=1 FT /transl_table=11 FT /gene="phyB3" FT /locus_tag="RPA0122" FT /product="Bacteriophytochrome (light-regulated signal FT transduction histidine kinase), PhyB3" FT /function="InterPro FT IPR001294:IPR003018:IPR003594:IPR003661:IPR004358:IPR005467 FT COGs COG0642" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDI6" FT /db_xref="InterPro:IPR016132" FT /db_xref="UniProtKB/TrEMBL:Q6NDI6" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25566.1" FT /translation="MDEADSGGIVTARNVDLSSCDRELVQYPEAIQPHGAMLTVDEQSD FT RVLHASANCAAFIGKPPEAVIGAPIAAVLGAGWHELLGSLHRMPLDSGPVNIARESFLG FT SDQGWHLFAHRCGGLIILEFEKAEPEAAGTTSNLYSEVRADLAALQATEGVQAFFDLAV FT ERIRAFTGYDRVMAYRFAEDGSGQVIAEARRDDLEPYLGLHYPATDIPAPARRLFALSW FT VRHLPDVGYTPVPLLAAKSPLVTGPVDMSFASLRSVSVMYTGYLKNMGVQSTLVMPLVK FT EGRLWGLISAMHHAAPRHISHQMRMAAEFLAHTLSLLMSAKEDAEQFERSSARKAAAEA FT LTRLLDSEADIGAALHAAGALDLLSALIDAGGVVVQTGDEVATRGEAPAAAPLHELTSW FT LRERARPVFATDRLPNLDPAAQAVASQASGVLALRPLPDQPMLIAWLRPEQIEDVQWAG FT DPRKPVEISDADGMQRLRPRNSFALWKESVQGRAVPWRDDEKDAATRLAAAIAEIAAAR FT KGRIERINRALDASHSELSRYTDVASAELKEHLRGIHHLTTSLRRRQGEVLDEEGRQQV FT ATILKLTQRMDALVDALLDRSRGGSEAASETVDLEAVVDDALAPFARRIAEDRIEVRRP FT MRLGTAQGHREWIGEVFTNLIGNAIRYNDKPERWIEIGVEAGSPPRYYVRDNGIGIADT FT DQQLVFQMFHRVDQSEQKAEGAGVGLAMTRRIVAHHGGRIWVQSRLGEGATFYFTLAPD FT EERHDA" FT CDS 139006..140646 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0123" FT /product="possible KTN NAD-binding domain involved with K+ FT transport" FT /function="InterPro IPR001622:IPR003148 COGs COG1226" FT /db_xref="GOA:Q6NDI5" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q6NDI5" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25567.1" FT /translation="MRSIVRLGLSRLRPPLILLALVFAVSTLGLMLIPGVDAQGHPWRM FT TLFDAFYFVTYTATTIGFGELPHPFTNQQRGFVTVIIYLSVIGWAWLLGSLLSLVQEKA FT FQQALVDRRFRRAVEELDQPFYLVCGLGDTGMTVVHALRQLGCRLIAIDKDERTVQQLE FT IEGLNGKAPALIADARSPETLTAAGLMKAECKGVLTLCNDDEVNLAVAITASILRPGLP FT VIGRADTSATAASMSSLGTHRVINPFREFAEHLTLAMRAPDVYRLIAWLTSAPGAYLFP FT SAPARMPAAPGHWIVCGHGRFGREVVTAVQRGGFTAAVIDPVGSRVDGHHAVHGRGADV FT AALHEAGIGHASGIVAGTDDDAENLAIALAARRLKPEIFVIARQNQRSSRMLFAKLGAD FT ITMVPSEIIANQCLAALRTPLLADFLEAARHQNAFWAFTLSERLRAALGNETPQFWSTV FT LDADHASNLVGSDGALKQPLTVAELCVDPEHQDAAHPLRRRAIVLRLIRGDSTIETPAD FT DAVLQPGDTLLCVGSAAVRATQQRRLGGR" FT sig_peptide 139006..139122 FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.984) with cleavage site probability FT 0.682 atresidue 39" FT misc_feature order(139042..139110,139138..139197,139234..139302) FT /note="3 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS complement(140653..141477) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0124" FT /product="possible 3',5'-cyclic-nucleotide FT phosphodiesterase, cpdA" FT /function="InterPro IPR004843 COGs COG1409" FT /db_xref="GOA:Q6NDI4" FT /db_xref="InterPro:IPR004843" FT /db_xref="UniProtKB/TrEMBL:Q6NDI4" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25568.1" FT /translation="MKFVVLTDTHFVARGRRIYGLDPAERLSAAVARINREHPDIAFVI FT VTGDLAHWGEEPAYDNLASVLAGLRAPTILMMGNHDKREAFAKFFPGVPRDASGFVQTV FT QVFEAATIVTLDTLNEAAPNHEGFLCEARLAFLEHALAEAPADRPLLLFQHHPPFDTGL FT RYMDTIRLANPDAEWEVIARTRKPDYLFMGHLHRPISGVWRGIPFHIQRGLAHQVAFDL FT VAEGHIPGSHEPPDYAHVSVEADRIVIHQCSFMYDGPLFSLHDSVALHRVSF" FT CDS complement(141474..142298) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0125" FT /product="possible 3',5'-cyclic-nucleotide FT phosphodiesterase, cpdA" FT /function="InterPro IPR004843 COGs COG1409" FT /db_xref="GOA:Q6NDI3" FT /db_xref="InterPro:IPR004843" FT /db_xref="UniProtKB/TrEMBL:Q6NDI3" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25569.1" FT /translation="MKLIHLSDIHLTTPGGTIGGRNPRLNFERALTHILRDHHDAELMV FT ITGDLSDWGDAEDYRWLKAQLGAFPIPVRLCIGNHDRRETFLSVFPEFADDDGLVQGVC FT DTPAGRCLLLDTAEAGTHAGRYCETRRAWLTRQLAEHPGPFLLFMHHNPMPTHLGPMDQ FT IRLLDDGAFRQIVGRHRDRIRHIFFGHCHLPLAGSVAGVPVSSLRGTNHASYPLFSERR FT MLSASDLPESYGVVFFGDDYVTVHMVEFGYTGEVRVEGSPDYNAWNRETMLR" FT CDS complement(142363..143643) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0126" FT /product="possible sugar binding protein of ABC FT transporter" FT /function="InterPro IPR001687:IPR006059 COGs COG1653" FT /db_xref="GOA:Q6NDI2" FT /db_xref="InterPro:IPR006059" FT /db_xref="UniProtKB/TrEMBL:Q6NDI2" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25570.1" FT /translation="MLKRWIAAAAMTLVAGIAHAQQQTEVVLQFPYPELFSETHKRIAE FT EFAKVHPEIKVTFRAPYESYEEATQKVLREAVTNQLPDVTFQGLNRIRVLVDKTIPAPL FT DGYIAAEKDFDKQGFHQAMYDIGTASGKVYALPFAISLPIVYVNLDLVKQAGGDVNNLP FT TTWDGLLDLAKKVKALGPDTNGITYAWDITGNWLWQAPVFARGGTMLNADETKVAFDGP FT EGQFAMRTIARLVTEGGMPNLDQPSMRATFAAGKTGIHITSTSDLKKTTDMIGGKFALK FT TMAFPDVVKPNGRLPAGGNVVLITAKDKAKRDAAWEVVKFWTGPKGAAIMAETTGYMPP FT NKVANDVYLKDFYAKNPNNYTAVSQLALLTKWYAFPGDNGLKITDVIKDHLNSIVSGAR FT AKEPDAVLADMTRDVQNLLPKTVGAAK" FT sig_peptide complement(143581..143643) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 1.000) with cleavage site probability FT 0.999 atresidue 21" FT CDS complement(143666..144502) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0127" FT /product="putative permease protein of sugar ABC FT transporter" FT /function="InterPro IPR000515 COGs COG0395" FT /db_xref="GOA:Q6NDI1" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q6NDI1" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25571.1" FT /translation="MSAARPSLISSSFRHAALMVGAVLMLAPFVWMLSTASKPPEEIYS FT SDLHLIPHHFALWENLRIAFGKADLGRFLLNGVIVTVAIFTCQVLIALPAAYALAKLRF FT VGRKALFALVLFGILIPPQATAIPVFLLLHQLGALDSYAALVLPFTISVFGIFLMRQFF FT MTVPDDLLDAARMDGMSEFAIVWRVMLPTAIPAVTAFGIFSVVAHWNDYFWPLIVLNSQ FT QYYTPPLAVAHFRNAEAGTSYGPLMAAAIVIITPLVVAFLLAQRRFIEGITLTGLK" FT misc_feature complement(order(143711..143776,143885..143950, FT 144011..144076,144107..144172,144212..144277, FT 144398..144463)) FT /note="6 probable transmembrane helices predicted FT byTMHMM2.0" FT sig_peptide complement(144392..144502) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.985) with cleavage site probability FT 0.380 atresidue 37" FT CDS complement(144499..145458) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0128" FT /product="possible permease protein of sugar ABC FT transporter" FT /function="InterPro IPR000515 COGs COG1175" FT /db_xref="GOA:Q6NDI0" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q6NDI0" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25572.1" FT /translation="MSEVAMSDAAVSLRDLDALTTARASAKPRRRGRGTVAYGLVAPAL FT TLMLLMLLGPLAGVIALSFTDYQLGAPSFAWIGLANYQQLFADRVFWISLTNTLTYAVI FT VVPGSVALGLGVAMLIESGTHLRAFYRTIYFLPVMATLIAMAIVWEFMLHPQFGLVNGL FT IKMVGLAPHPWLQDRGTALYALCAIGIWQAVGFNMVLFLAGLMSIPKHLYDAAEIDGAA FT SAWSRFRLVTWPMLGPVTLFVVVITGIRSFQVFDTVHVLTKGGPSKSTEVLIHTMYMEG FT FEFFRSGYAAAVTVVFLCLVLLLTLVKSRLAAKQVHYA" FT misc_feature complement(order(144538..144603,144703..144768, FT 144850..144915,145003..145059,145099..145164, FT 145276..145341)) FT /note="6 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS complement(145451..146605) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0129" FT /product="putative sugar binding protein of ABC FT transporter" FT /function="InterPro IPR001687:IPR003439:IPR003593 COGs FT COG3839" FT /db_xref="GOA:Q6NDH9" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q6NDH9" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25573.1" FT /translation="MAKIELSAIRKSFGDTEVLKGVDLSIHDGEFVSLVGPSGCGKSTL FT LRVIAGLEPQSSGEVKIGGVAVDHVRPSARNLAMVFQSYALYPHLSVFDNIAVPLRMKR FT LSALERAPLLGRLIPNRYRVERGIRADVERVASQLEISPLLTRKPGQLSGGQRQRVAVG FT RALVREPVGFLFDEPLSNLDAKLRVHMRAEIAQLHRRLKATFVYVTHDQAEAMTMSGRI FT AVMIGGELVQVGTPSDVYDNPRDIRVAEFIGSPKINVLPGAVQTDGRLVMLDRVLAARA FT TAGAGPCRVAIRPERLSLGGGDLSGVVVHVENMGAEAFVHLGCDGLTDPVVIRLDDPLR FT LPAIGSTQRFGFAPEAIRLFDAGGKRLALRTEAPIEIIREVAHV" FT CDS 146733..147611 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0130" FT /product="transcriptional regulator, LysR family" FT /function="InterPro IPR000847:IPR005119 COGs COG0583" FT /db_xref="GOA:Q6NDH8" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q6NDH8" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25574.1" FT /translation="MALTSARVRAVNAVFDAGSFAAAARRIGVTQSAVAQSVRELEGEF FT GVTLFERHGANLIPTSLCRQLYGATSRMQAVETDALSILSQREELAGGELRVGLGNSMP FT GMALIATFKQMYPKVQVAIEIGSWSAIVAAVVDQRVDIGVLPDVPADRRFRREICLEQR FT VVALCHPSHPLKKKQQVPIAELMRYPLVFRTRDSSTQRAVDRAFRAASLRPIPSIVVNT FT REGMLEAVANHLGVGFMWEHGSSRVDRIAKVPIAELDAESPECIFALAGKKGRLVELFF FT LANGAHSPPRE" FT CDS complement(147617..148312) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0131" FT /product="ABC sulfate transport system, ATP-binding FT protein" FT /function="InterPro IPR001687:IPR003439:IPR003593 COGs FT COG1118" FT /db_xref="GOA:Q6NDH7" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q6NDH7" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25575.1" FT /translation="MSGPLLQFRDVQFGYQAPLLRGISFDVAAGSITAVMGPSGSGKST FT LLALAAGLLTPDAGAVHRRSARLGMVFQDPALLPWRTALDNVAFPLIALGLRQRERRDR FT ARAMLAAVGLSGDDVGKYPRQLSGGMRQRVALARALVIEPDLLLCDEPFSALDALVRAG FT LWQVLRDIHDRRGLTMLIVTHDGPEAMQCDRLAILSAGRLEQVGAPAEILRHPASDVVR FT TFVAAATGN" FT CDS complement(148309..149082) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0132" FT /product="ABC sulfonate transport system, permease protein" FT /function="InterPro IPR000515 COGs COG0600" FT /db_xref="GOA:Q6NDH6" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q6NDH6" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25576.1" FT /translation="MRGSARVSWAWSLVGIALLLALWEAGHRLYGPLVLPGLGDTALTL FT WRMIRAGQVGPALLETAGNAGLGWIIGVLIGSCAGMLAGLREEAQRALQPVAIILLGVP FT AIAWVVLALLWFGGRWAVVVTVAAATGPMLFAAALEGVRSLDSTLARMAQVYQVPLSAR FT LTEVYGPQLLSHLFPALVTTLAMSWKVAVMAELLAGAGGIGDGLGTARAHVDTAETMAW FT VVVVVGVLIVVDAGVLQPLQRRLWLWRDDERGGGR" FT misc_feature complement(order(148360..148425,148501..148566, FT 148657..148722,148735..148791,148828..148884, FT 149005..149061)) FT /note="6 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS complement(149072..150064) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0133" FT /product="ABC sulfate transport system, periplasmic binding FT protein" FT /function="InterPro IPR006311 COGs COG0715" FT /db_xref="InterPro:IPR006311" FT /db_xref="UniProtKB/TrEMBL:Q6NDH5" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25577.1" FT /translation="MSPPQHLIPTRRDVVRGLAALPALGLTRTFAAEPLTLWGIPATPS FT ALFVRAVASEQLQQAAPGIRFQLWKSTDQMRAGIASGQFRLFATSTYAAANFFNRGAGT FT RMLNVVTWGVLYVMARDPAIKSVADLAGRSILLSNKNEAPDLLFRLVLRWAGLDPDRDV FT RCEYVGSPGEAVPLFLAGRSDVAVLHEPAASTALLRAEREGKPVYRVLDIAELYGRHTG FT RGPRIPQVGLAVSADLLDTQPGLVAAVQAACVEASTWIAAHPAEAAELAAPALGLPAEV FT IAASLPHVRLDVVPARQARDDIEVYFNNLMELDPGIVGGRLPDAAFYAG" FT sig_peptide complement(149969..150064) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.840) with cleavage site probability FT 0.671 atresidue 32" FT CDS complement(150080..151939) FT /codon_start=1 FT /transl_table=11 FT /gene="hydC" FT /locus_tag="RPA0134" FT /product="hydrogenase gamma-fused hydrogenase large and FT small subunit" FT /function="InterPro IPR001041:IPR001450:IPR003149:IPR004108 FT COGs COG1034" FT /db_xref="GOA:Q6NDH4" FT /db_xref="InterPro:IPR019574" FT /db_xref="UniProtKB/TrEMBL:Q6NDH4" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25578.1" FT /translation="MCTPDQASLSARDPAEATITLSINGVACAGFANETILSCARRYDV FT YIPTLCELEDIDHTPGACRVCLVEILQAGKDTPQIVTACNTPVRDGMEVQTRSKKARDM FT QRLQVELLMADHLQDCATCIRHGSCELQDLAQFVGLQQNRFFDRERTEARPVDHSSPSM FT VRDMRRCVRCQRCVAICRYHQKIDALAIEGSGLERMVALRDADGYPNSVCVSCGQCVLV FT CPTGALGERDETDRALDYICDPNVVTVVQFAPAVRVAFGEEFGLPAGTNVEGQIIAACR FT KLGVDVVLDTNFAADVVIMEEGAELLARLKQGRRPTFTSCCPAWINFAEIHYPDVLPLL FT SSTKSPQQVLSTIAKSYLPAQLGVPAERIRVISIMPCIAKKDEAVRPQMVHDGQPETDL FT VLTTREFARLLRREGIDLKDLPSSQFDRPFLSAYSGAGAIFGTTGGVMEAAVRTIYALV FT NGRELERIELTQLRGFEGLREATVDLGAPVGEVKVAMVHGLGDTRKLVESVLSGEANYD FT FIEVMACPGGCVDGGGSLRSKKAYLPLALKRRETIYNVDRAAKVRQSHNNPQVQALYRE FT LLQAPNSEIAHRLLHTHYASRKRELQHTVKEIWDDLTMSTILY" FT CDS complement(151939..153960) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0135" FT /product="possible oxidoreductase" FT /function="InterPro IPR000205:IPR001327:IPR001950 COGs FT COG0493" FT /db_xref="GOA:Q6NDH3" FT /db_xref="InterPro:IPR019575" FT /db_xref="UniProtKB/TrEMBL:Q6NDH3" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25579.1" FT /translation="MRAVPWGGVEMTQVVYGVWDGVAYDSRAAEARAADYALANFDEFD FT EGNAIRAFIADRGFFVFDPTVSLVDALFHYLKAAAEQSCGACTPCRIGTVLVRDALDQM FT RRGLDAALTLDDIVMLGEQIRQTSLCGLGQTCAVALLAVLRDFRERIEQELAQHRPIPA FT QHGMAYVTAPCIEACPSKVNVPRYIDYIRDGKPENSLGVLLQKYPMAATCGRVCVRYCE FT QACRRKFVDEAVGIKTLKRYVADQQSGPHALKFTRDMIRKPLADGMRVAVVGAGPAGIS FT CAYHLLLRGYHVDVFDKAGQAGGMAQIGIPSYRLPKDTLALETDIIVDLGGRFLFDQRL FT GRDFSVDDLFARGYRAVFLGLGCQQGARLGVDGEDAAHGGYFSGIDFLLKVHDHVDGIA FT PLVLQGEVVVVGGGNVAMDCVRSAIRLGAEKVHVVYRRTLADMPADPAEIEAARAEGVE FT FHVLTAPAEIVTDHGKVTGVVLTRMQASEPDAGGRRSVKPVPGSETSMRCDVLIAAIGQ FT QVEDGPLIESDGIAFDRWRCVATDRVLATSRPGVFAGGDCVTGPSTLVYAMAAGLKAAR FT NIDDWIQRGSVRFFKRSRMRKLIADNHMLANEIVAAPVRNAYRVHNPEIDPELRKHMFG FT EVEQTIDARAAYAETQRCMRCYRVYSVVTKHPIPEGAA" FT CDS complement(154100..155809) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0136" FT /product="methyl-accepting chemotaxis receptor/sensory FT transducer" FT /function="InterPro IPR002114 COGs COG0840" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDH2" FT /db_xref="UniProtKB/TrEMBL:Q6NDH2" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25580.1" FT /translation="MSSLKHPIADAVASIELVASRIETTFAQVGGQLGEGHGIFQGLNE FT ALADLARELSSAQIEGASGALRDIAGRLKSLADTLPAESALLDQLRRNVAEAGALLKQL FT LKHVEMITTIARSAKIESASLEGDREGFIAFTREAYDLGRAVQSSIEACVKDQQLLAAA FT VETTWGRQSEFERRYRPQLGASGGELMSAFADLGRQRNDSVGVAELAGSSARTISDVVG FT RSIISLQAGDSTRQRLEHVCEGLRRAADPEPTLVPDMTEVQPLPRLLVNLEAVQLHDTQ FT QEFDAGIGDIVRALSTILTEVATLVEKGRSLHGGREGGSASFLSRVRQTLAQASSLIAM FT CEDGGRSIDEALSVVENTLEKFRDAIANLSDSVVDISLIGMNAGLRAGHLGAKGRAFVV FT IAHEMKLTADQMTGAAVRLRPLLSEIAKVGDDLRKSRVSSDQTKLTSMENAILQTLHDV FT EAGNDRLGGLIGRLIEEGAKFDAVMNGAREQMTSLGSSASTLPTVAKCLEDAVGDLGRA FT SFGDQDEAVLDELYARYTMERERDVHRQFLLPFGITAKQAAPAANDCDFELF" FT CDS complement(155814..156905) FT /codon_start=1 FT /transl_table=11 FT /gene="cheB1" FT /locus_tag="RPA0137" FT /product="chemotaxis methylesterase, CheB1" FT /function="InterPro IPR000673:IPR001789 COGs COG2201" FT /EC_number="3.1.1.61" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:P62645" FT /db_xref="InterPro:IPR001789" FT /db_xref="UniProtKB/Swiss-Prot:P62645" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25581.1" FT /translation="MAKQKIRVLIVDDSASVRQVLGTILAEDPEIEVIGTASDPFVAAK FT RLQNELPDVILLDIEMPRMDGITFLRKIMAQHPIPVVICSSLTPEGSDLMFEALEAGAV FT DIVPKPRVDTRQALMESSGRLREAIKSAARARVRPRAARKVIEQKLTADAIIPPPVAGR FT SRPTTERIVCIGVSTGGTEALYDVLEVLPPNCPGILIVQHMPQGFTAAFAKRLNAGCQI FT NVKEAEDGDPVLPGWAYIAPGARHMLLVRSGLRYQIAIKDGPPVSRHRPSADVLFRSAA FT QYAGANALGIIMTGMGDDGARGLLEMRKLGAYTCAQDEESCVVFGMPKEAIACGAVEKV FT VSLNQIPREIMAWQQAKQPASAD" FT CDS complement(156926..157768) FT /codon_start=1 FT /transl_table=11 FT /gene="cheR1" FT /locus_tag="RPA0138" FT /product="chemotaxis methyltransferase, CheR1" FT /function="InterPro IPR000051:IPR000780:IPR001601 COGs FT COG1352" FT /EC_number="2.1.1.80" FT /db_xref="GOA:Q6NDH0" FT /db_xref="HSSP:1AF7" FT /db_xref="InterPro:IPR000780" FT /db_xref="UniProtKB/TrEMBL:Q6NDH0" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25582.1" FT /translation="MVHAKRQLSDRQFRSLAELIEDQVGIKMPNAKRLMLEGRLHKRVR FT ALNYSGVSEYVDNLFDKAVLDDELTHLIDVVTTNKTDFFREPQHFDFLKTVAVPELLKL FT PNRKSNDLKVWSAACSTGMEAYTTAMVLDDMVRAGARFQFRILGTDISTAVLRVATAAI FT YNREVTAPVPPQFVERYFLTSRDRSREEVRVVPELRRLTNFTRMNLMDSSYPVDRDVDV FT IFCRNVLIYFDRETQRKVVEQLCSHLRPGGYLLVGHSESMIHSALPKLRQVQPTVFKL" FT CDS complement(157930..160131) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0139" FT /product="methyl-accepting chemotaxis receptor/sensory FT transducer" FT /function="InterPro IPR003660:IPR004089 COGs COG0840" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDG9" FT /db_xref="InterPro:IPR003660" FT /db_xref="UniProtKB/TrEMBL:Q6NDG9" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25583.1" FT /translation="MRLTVKAKLAGAFGVVILLSAITGGIAYVKLTQLAETSEGLVSRS FT QRIDKAGELQNNILYQTRAQRDIIIASTDAELQKVADEVKQYRKDALRIRDEIAAVATE FT AGKRMIEKFSTAYDKMNATEDQIIKFGTLNSNNRGAQLWTSEGAPVVKDWSEAVESSLA FT EARKLPVSAERANALISILSIRADGEAVQKDLALSFYASNLEDLSSTIKALGDATERLR FT SSSQQSVAALSAVGLSSSAITSQSERFAKIAGRVSDIVKEGGNIRAAALAGTEGRATSM FT VAIQAATDYVNYVKKAMAEMSEQAASDAANAKLLLISIVIASLLAAVASALWIAINISR FT GLAQAVELANAVAIGDLSHKINSTSDDEVGDLVKSLNAMTANLNATAGVADEIARGNLT FT IEAKRLSEKDTLGIALEQMVEKLRQIVSEALTAAQNVSAGSQELSASAEQLSQGATEQA FT SSAEEASSSMEEMAANIKQNAENASQTEKIAAQSAKDAEASGAAVGRAVEAMQTIAEKI FT TIVQEIARQTDLLALNAAVEAARAGEHGKGFAVVASEVRKLAERSQASATEIGELSGET FT VKVAQEAGEMLAKLVPDIKKTSELVQEISSACREQDVGSSQINQAIQQLDKVGQQNASA FT SEQVSSTSEELASQAEQLQSTIAFFRIDQDKAKAHGAPIDKAVNQLRAKAAHMASVDRG FT TKKPQAAKPQRQLKAAGGGGGFAFALGDGEDDRDADFQR" FT misc_feature complement(order(159124..159189,160045..160101)) FT /note="2 probable transmembrane helices predicted FT byTMHMM2.0" FT sig_peptide complement(160042..160131) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.968) with cleavage site probability FT 0.461 atresidue 30" FT CDS complement(160198..160686) FT /codon_start=1 FT /transl_table=11 FT /gene="cheW1-3" FT /locus_tag="RPA0140" FT /product="chemotaxis signal transduction/oligomerization FT protein CheW1-2" FT /function="InterPro IPR002545 COGs COG0835" FT /db_xref="GOA:Q6NDG8" FT /db_xref="InterPro:IPR002545" FT /db_xref="UniProtKB/TrEMBL:Q6NDG8" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25584.1" FT /translation="MAETAQYLTLGLAGETFGMAIRNVREILDMRPISRLPHAPEFMLG FT MIDVRGTGYPILDLRLKLDLPAVPPTEATRIIILDVPVAGRVVGVGFVADCVYEVTDIE FT ESSLEQVPDVGGKWKSDYIAGIGRKGDRFVIIFDLARLMAGTDVSAGAAETPSNDLAA" FT CDS complement(160747..161217) FT /codon_start=1 FT /transl_table=11 FT /gene="cheW1-1" FT /locus_tag="RPA0141" FT /product="chemotaxis signal transduction/oligomerization FT protein CheW1-1" FT /function="InterPro IPR002545 COGs COG0835" FT /db_xref="GOA:Q6NDG7" FT /db_xref="InterPro:IPR002545" FT /db_xref="UniProtKB/TrEMBL:Q6NDG7" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25585.1" FT /translation="MSSDRVQGATDGDADAMQVVMIGLGDEKFAIDAGLVREIIDPIPA FT TKVAGAKAFVPGVINVRGNVIPFADLRIRFGMPVQTHTADSRIVVLEVRLDNEAVLVGV FT SADRVYEVTEISRTDVQQTPRVGMHWKPEYIRFITKWRDEFVVVPNMERILN" FT CDS complement(161217..163283) FT /codon_start=1 FT /transl_table=11 FT /gene="cheA1" FT /locus_tag="RPA0142" FT /product="multidomain chemotaxis histidine kinase CheA1 FT (Hpt, CheA, & CheW domains)" FT /function="InterPro FT IPR002545:IPR002570:IPR003594:IPR004105:IPR004358:IPR005467 FT COGs COG0643" FT /db_xref="GOA:Q6NDG6" FT /db_xref="HSSP:1B3Q" FT /db_xref="InterPro:IPR008207" FT /db_xref="UniProtKB/TrEMBL:Q6NDG6" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25586.1" FT /translation="MTTIDPAAVFRQEAAELFEVLEAALLDLGQNPDDRELVDSAFRAL FT HTIKGSGAMFGFDKVATFTHEFETAFERVRKGEIKPTQDLVSVALAAKDFIRALIETPD FT EADAIIGEAILADLSRFVSPTEAVEAPVSSPAQEPAPAPVSERRQVGWHLRFEFDSQIL FT RNGSNPLDLLDDLSKLGSCFAMPLTDGIPFLDELVPEDCYLKWDVSLHSDCDKAAIDDV FT FMFVQDEMQLSLEPLFEGETPQPVPVLELPDVSILPPEPPQAAEETKPAPQAATAAPAA FT PTVERRSGEPRRADDRGIATVRVQAERLDELMDRVGELVIAQARLTQLAASGNDISIKL FT IAEEIERLASSLRDTTMGARMVPIGSLFGRFRRLVHDLSRDLGKPVEFITSGEDTELDK FT TMIECLADPLVHLIRNAIDHGIEAPAARVAAGKPEQGRIELAAVHAGAQVLVTVKDNGG FT GLNTARIRAKAEEQGLIAPGVTASDQEIHQFLFHPGFSTAQTVSALSGRGVGMDVVKRT FT IENMRGSIDLSTVPGDGTTVTLRLPLTLAIIEGLLIRVGSGRYIIPLSAVEECVELTAE FT DERSRSRNFLNVRGNLVPFLRLRQIFDADGEPDQHQKTIIISTGETRVGLVADQIIGNH FT QTVIKSLSKLHSDVTMFSGATILGDGTAALILDVVQLVGLAQAQSEKQMSEAA" FT CDS complement(163280..163645) FT /codon_start=1 FT /transl_table=11 FT /gene="cheY1" FT /locus_tag="RPA0143" FT /product="response regulator receiver, CheY1" FT /function="InterPro IPR001789 COGs COG0784" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDG5" FT /db_xref="HSSP:1A04" FT /db_xref="InterPro:IPR001789" FT /db_xref="UniProtKB/TrEMBL:Q6NDG5" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25587.1" FT /translation="MATILTVDDSPSIRQMIKVTLEPAGHSVVEAGDGAQGLSKAQATK FT VDLVITDLNMPVMNGLELIKALRKQPNLVGLPIVFLTTESNDAVKQEAKSCGATGWITK FT PFKPEQLLSVVSKLVRS" FT CDS complement(163645..163968) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0144" FT /product="Sulfate transporter/antisigma-factor antagonist FT domain" FT /function="InterPro IPR002645" FT /db_xref="InterPro:IPR002645" FT /db_xref="UniProtKB/TrEMBL:Q6NDG4" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25588.1" FT /translation="MTFDPTEAGAALRLPSDCSISSIRSIHETIQEALGRQGPLEIDCS FT KVNRADLTSIQLLLSTAKTGEAQGRPVVLTELSEVLLNTIQRAGFTGDEIIDKHFPQKK FT GGS" FT CDS 164246..165412 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0145" FT /product="Metal dependent phosphohydrolase with a response FT regulator receiver domain" FT /function="InterPro IPR001789:IPR003607:IPR006674 COGs FT COG3437" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDG3" FT /db_xref="InterPro:IPR006674" FT /db_xref="UniProtKB/TrEMBL:Q6NDG3" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25589.1" FT /translation="MRIMLIQALVVDDSRSALDYLKRTIEADGQVHVIAFTDPLEALSS FT ARNIDIDIVFADYEMPKMDGISLIRRLRSLPKFSDIPIVMITSIESDEVRLQALDAGAT FT DFLPKRPKSLETQVRLRNMIRLGSAVRKLNDRAALLASEVARATHALQEREEEIILRLA FT LSVEYRDNDTGDHTLRVAKYSRMIAEGLGLPERLCRDIYLAAPLHDVGKVATPDHILLK FT PGKLTPDEIAVMQTHTTIGASILAGSRCELIQLAADIAIGHHERWDGKGYPNKLKGAEI FT PIAARIVAVADVFDALATARPYKVAMPLPVARQHLENGRGQHFDPTCVDVFLARWDEVV FT AIATERLKLQQTHDAPLQPSLPPDAREPTITLPASNRKAGQMGLVPSE" FT CDS 165452..165883 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0146" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q6NDG2" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25590.1" FT /translation="MSPRQQGEADRVRPAAGGAFWTGLNAANSAPCVRDVRLMKANPSG FT GQVGPLLLGRQSGFLDEIQRPIDLHRAHARGFPVHEDRTDHAAPSVVLADFVAKLELVH FT SHTLRKEPVSQIQPDVLPDAENVNDTLTIKTGARDQARV" FT CDS complement(165961..166752) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0147" FT /product="transcriptional regulator, ModE family" FT /function="InterPro IPR002197:IPR004606:IPR005116 COGs FT COG2005" FT /db_xref="GOA:Q6NDG1" FT /db_xref="HSSP:1B9N" FT /db_xref="InterPro:IPR016462" FT /db_xref="UniProtKB/TrEMBL:Q6NDG1" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25591.1" FT /translation="MADNKIDAYLVLRSGGRLLAGRDRIHLLEAVAEHGSISKAAKAMG FT LSYKTAWEAVDAINNLLPTPAFLTRTSGRVGGAADITPEGRRLITVFHRLEEHLTKIST FT LIAEEGLEEIGDALLWASGFKVSARNKFIVEVISIRRWPVDVEVELKVSDDLTIHATIT FT NAAAEQLDLAPGRKALALIKAPFVRLVTPDEASKLRRNVFRGVVKRRVDAEVHSEVNLD FT IGGGKTIVAVVPRQDAEDLGIAENAEAAVTFEADHVIIAVQ" FT CDS complement(166873..167409) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0148" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR018912" FT /db_xref="UniProtKB/TrEMBL:Q6NDG0" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25592.1" FT /translation="MAPLPLAVIVYEPGDVLEEILAAARDRLVGLPDVRIAGLVPRLGP FT RHSNGRASFWLDDIVRGDSIALSQDLGPGSTSCILNADGLATARMRLAEAIAVRPDLVL FT FGRFAKEEIAGRGIREEIGLALAQDVPALVAVERAMLPGWIAFAAEGWTMLPADADAVV FT AWFVALAAERQSADT" FT CDS complement(167433..168227) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0149" FT /product="possible ABC-type iron-siderophore transport FT system ATP-binding protein" FT /function="InterPro IPR001687:IPR003439:IPR003593 COGs FT COG1120" FT /db_xref="GOA:Q6NDF9" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q6NDF9" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25593.1" FT /translation="MTGRLVLDDVAIGYDGQPLAEGIDLVLSGSSTTCLMGPNGVGKTT FT LFKTVLGIVPPLRGRIMIGGDDIATLRPEQIARRIAHVPQAYQGDPSHSVIDIVVMGRT FT ARLGIFAAPGRDDYAAAWRALESLGIADIADRSADRISGGQRQLMLIARALTQDTELII FT MDEPTASLDLGNRFGLLDQIRALSARGLSLLVSTHEPEHAFAIADHVVILGRGQPVAVG FT PVDGILTAERLRELYGLDLAIETTPMGRRVVTRSDLSATPAR" FT CDS complement(168224..169246) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0150" FT /product="putative ABC transporter, iron, hemin permease FT homolog" FT /function="InterPro IPR000522 COGs COG0609" FT /db_xref="GOA:Q6NDF8" FT /db_xref="InterPro:IPR000522" FT /db_xref="UniProtKB/TrEMBL:Q6NDF8" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25594.1" FT /translation="MPILRVTPVVAGLAILLLVVVVSAAGIGPYRIAPGDVVAAIAAWI FT GGGHIDGQIAAVLFQVRLPRIAAAICVGGALSAAGAAYQSLFRNPLVSPDILGVSQGAG FT FGAVVGILFGLPVAMIQALGFVTGSLTVILVVTLAWSLRQRGDILMLVLSGIVVGALAA FT AAISLVKIVADPYAQLPMITYWLLGSLASIRPDDIAVVAPTVAIGMIPLFLLRWRISVL FT SCGDDDARALGVDVRRTRQIVIVAATLITASVVAISGIIGWVGLMVPHLARLLVGPRFD FT RLLPVSILIGAAFMVVVDTIARTAATIEIPIGVLTALVGGGLFVWLMTRRGSRSIWRRE FT " FT misc_feature complement(order(168266..168331,168455..168520, FT 168584..168649,168734..168799,168821..168886, FT 168983..169048,169070..169135,169166..169231)) FT /note="8 probable transmembrane helices predicted FT byTMHMM2.0" FT sig_peptide complement(169172..169246) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.997) with cleavage site probability FT 0.821 atresidue 25" FT CDS complement(169248..170297) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0151" FT /product="possible iron ABC transporter periplasmic binding FT protein" FT /function="InterPro IPR002491 COGs COG0614" FT /db_xref="GOA:Q6NDF7" FT /db_xref="InterPro:IPR002491" FT /db_xref="UniProtKB/TrEMBL:Q6NDF7" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25595.1" FT /translation="MIGQARRLVVLLGLTMLTFAVCASAVHARTVTDSVGRRVEVPDYI FT TRVFAAGPPAGIFLYVVAPEKMIGWGRAPRDIDKPFLLPKVRDLAELGRLTGRGDTISA FT ERLMASKPDLIIDLGSVNETYRSIADRIQAQTGIPYVLIDGRFENTPTAIRLLAQILGV FT SARGEELAKASEAIFADVDRVVGAVPAASRPRIYLARGNDGFETGSRGSINTEIIERVG FT AVNVVEGIREAGGLARVSPEHVIGWAPDTIITIDPAVRDLIMSRPEWQPIPAVQNKRVF FT LLPNQPFGTIDLPPSLNRLIGLPLLLHALYPAQVTSDLKTELRDFYRLFYQVEVRDGDL FT DPLLEGLCR" FT misc_feature complement(order(170109..170165,170211..170276)) FT /note="2 probable transmembrane helices predicted FT byTMHMM2.0" FT sig_peptide complement(170211..170297) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 1.000) with cleavage site probability FT 0.996 atresidue 29" FT CDS complement(170294..170797) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0152" FT /product="Protein of unknown function, UPF0066" FT /function="InterPro IPR001378 COGs COG1720" FT /db_xref="InterPro:IPR001378" FT /db_xref="UniProtKB/TrEMBL:Q6NDF6" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25596.1" FT /translation="MDATDDIRAGELASDWSGSPDAGVVFIGRIHTPWNRLKECPRHGR FT ADGPVCRIEVFETWLPALAGIDDGTLLEVFYWLHRSRRDLLLQCPRNDGDARGTFSIRS FT PLRPNPIGTSIARVDRRDGANLFIRGLDCLDGTPLVDLKPDRAEFMPLAPPKPGDFQVG FT EPRR" FT CDS 171435..173618 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0153" FT /product="possible outer membrane receptor for Fe FT transport" FT /function="COGs COG1629" FT /db_xref="GOA:Q6NDF5" FT /db_xref="InterPro:IPR012910" FT /db_xref="UniProtKB/TrEMBL:Q6NDF5" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25597.1" FT /translation="MKRVNRLSVLLASAATMTSVNAAQAGNEGVYELGTIHVTAAGANS FT SEFNNFGGSTISNQQTERFDKHTLDRAIDLVPGVAAGTTGSQRNETNIYVHGFDRLQVP FT LSIDGVRIYLPADNRIDFSRFLTDDISEIQIAKGYVSVLDGPGGLGGAINLVTKKPVRP FT IEGEWRSQAEFGNGGRFDGFRNYGRVGGKQNDYYFQASASWQKIDGWELPSSFTPTSIE FT NGGRRDFSSSNDWSVNLKAGWTPNPEDEYSINFIRQNGEKGAPYNVEPTASQKYWSWPY FT WNVQILSAATKTAIGDDEYVKTRTFWETFDNAIDMWDDAAQTLRYSSSASRSIYQDWAV FT GNSIEVGKDFGRFDTLKFATHVRRDNHSEWNELYTDRYGLNGTTTPKSKTCATTKTANI FT NCFDEPAQTSTEDTYSVATENTVHFGPDIDWVQGVSYDWRHLSKAEEYVLGQVNKSVYY FT EPYWINYRLTDSSALNWQTAAVWRYSETAKLFANISDRTRFPTLFERFSSRFGTGASNP FT DLAPERAINYQIGWTNAFAPKSQVSILGYYATVENMMQSVATGKSYTDPITGKVSAITQ FT YQNVGDGHRYGVDFAVDYAFTPTLIAGGNISYIHNVLTNPIDPTIEQTGIPTVKGMVYA FT TYSPIEGLSLTPNVTYADERWSQKTEVINNKTVSSYVKTGAYVLANFATEYKVRENFTV FT SGGVKNIFDRNYQLAWGYPEPGRTFYVGFKGTF" FT sig_peptide 171435..171503 FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 1.000) with cleavage site probability FT 0.903 atresidue 23" FT CDS 173675..174313 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0154" FT /product="possible MotA/TolQ/ExbB proton channel family" FT /function="InterPro IPR002898 COGs COG0811" FT /db_xref="GOA:Q6NDF4" FT /db_xref="InterPro:IPR002898" FT /db_xref="UniProtKB/TrEMBL:Q6NDF4" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25598.1" FT /translation="MHDISLTPAAVFAQAGPVVKTVLVLLLAASILSWVWIVEAVVAFM FT RLSAALRRSRDGDEATILATVSAAGAAARDALPRGTSEADRRAKVVDTMTRAARDLILK FT AEAGLPNLAIVSSVAPFVGLFGTVWGIMTSFAGIAEARDTSLAVVAPGIAEALAATAWG FT LAAAIPASIGYNRIGALFNRTAIALDDFVQAEAERLIGADLERASARSR" FT misc_feature order(173738..173806,173999..174067,174110..174178) FT /note="3 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS 174326..174793 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0155" FT /product="putative tolR/exbD protein" FT /function="InterPro IPR003400 COGs COG0848" FT /db_xref="GOA:Q6NDF3" FT /db_xref="InterPro:IPR003400" FT /db_xref="UniProtKB/TrEMBL:Q6NDF3" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25599.1" FT /translation="MGVLEAIRSRGNDLRPQAEINVTPLVDVMLVLLIVFMVTAPMLTA FT GLPVDLPKATTAHPLERSEPIVVTLDRDGNAQLGDKGVAVDGLGDAILTLTAGDRTRAI FT HVRADRECRHGALVAVLDQLGAHGLSRIAILTERAPGVRAPRQDDKPRDSR" FT misc_feature 174386..174454 FT /note="1 probable transmembrane helix predicted byTMHMM2.0" FT CDS 174790..175608 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0156" FT /product="tonB like protein" FT /function="InterPro IPR000694:IPR006260 COGs COG0810" FT /db_xref="GOA:Q6NDF2" FT /db_xref="InterPro:IPR006260" FT /db_xref="UniProtKB/TrEMBL:Q6NDF2" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25600.1" FT /translation="MTGPTPALSPGGRLLLLGAVAACHAMIFLHWEETPSALAMETPME FT VTIIAAGEAAIDIPEAVAAPAPAPAERSEPEPPESSPAADEPAHANDRPPSPEPSPEVV FT ETPQSPIRVETSAKPNRPQPSRPDKRYDKRDHKHIAAPARPASRPAAATSDNAGDSEIS FT RVRTRMGADTGQQTSTATSRASYAALVVAEFNRRKVYPESARQTRQQGTASLSFAIGAS FT GEVISYKITRSTGSDALDRAIDSMMKTARPPPPPDGLFRGHFVVRFSMND" FT sig_peptide 174790..174909 FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.820) with cleavage site probability FT 0.466 atresidue 40" FT tRNA complement(175721..175810) FT /gene="tRNA-Ser3" FT /locus_tag="RNA_40" FT /product="tRNA_Ser" FT /inference="non-experimental evidence, no additional FT details recorded" FT CDS complement(175963..177126) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0157" FT /product="conserved unknown protein" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="UniProtKB/TrEMBL:Q6NDF1" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAE25601.1" FT /translation="MAEDSLTTTNAGIAAHGATRLPSVEIDSYNIEIKDEDGFLGDRAS FT KGAFQRLLDDWRKALRETGDDPFGRRDTKNIAKSALDEVLTSDDVAAAAVVHSAIEDFA FT QELAYVTKRFLRTKAWAETECIVVGGGFRQSRVGELAIARTDILLKADGHAVDLVPIRF FT HPDEAGLIGCLHLAPSWIFEAHDSILAVDIGGSNIRCGVVETAWKKAPDLSKASVWKSD FT LWRHADDEPTREGAVKRLTRMLKDLISEAEDEGFKLAPFIGISCPGVINADGSIEKGAQ FT NLPGNWESSKFHLPRSLLEGIPTIGSHDTAILMHNDGVAQGLSEVPFMQEFERWGVLTI FT GTGLGNARFTNRRDKDKAKKEREKDKEKDKEKDKEKGKKDKDSKEKA" FT CDS 177448..177828 FT /codon_start=1 FT /transl_table=11 FT /gene="rplU, L21" FT /locus_tag="RPA0158" FT /product="putative ribosomal protein L21" FT /function="InterPro IPR001787 COGs COG0261" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDF0" FT /db_xref="InterPro:IPR018258" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDF0" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25602.1" FT /translation="MFAVIKTGGRQYRVVPEDVLEVGKIDGDVGSIIQLGEVLVLGGDT FT PVLGAPTVAGATVAAEVLDHKRGPKVIAFKKRRRKHSKRKRGYRDEITVLRITEILADG FT KKPSVGPRAKRTKAAPAAEAAE" FT CDS 177918..178190 FT /codon_start=1 FT /transl_table=11 FT /gene="rpmA, L27" FT /locus_tag="RPA0159" FT /product="ribosomal protein L27" FT /function="InterPro IPR001684 COGs COG0211" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDE9" FT /db_xref="InterPro:IPR018261" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDE9" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25603.1" FT /translation="MAHKKAGGSSRNGRDSAGKRLGVKAFGGEHVIPGNIIARQRGTQW FT HPGLNVGMGTDHTLFAKVEGRVEFRAKANGRTYVSVLPIAMQAAE" FT terminator 178256..178281 FT /note="TransTerm prediction, 98+%" FT CDS 178325..178924 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0160" FT /product="possible acetyltransferases." FT /function="InterPro IPR000182 COGs COG1670" FT /db_xref="GOA:Q6NDE8" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:Q6NDE8" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25604.1" FT /translation="MLQEIPTTTPSLREARPCVLETERLTLRKPVLADVQAIASLANDR FT RVVEMTRRMPFPYTRDDAARFVTALPKSSDSVFLIEAEDLEPIGLVGVDWSDRDAPELG FT YWLGVQHWGNGYATEAARAVIDFTFEVHGAKQMISGARVINPASRNVLEKCGFQWTGVE FT LHRFESIGSSTPVDCFRLTRGVWSSLKKWGTTKRRC" FT CDS complement(179631..180536) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0161" FT /product="Permeases of the drug/metabolite transporter FT (DMT) superfamily" FT /function="InterPro IPR000276:IPR000620:IPR001865 COGs FT COG0697" FT /db_xref="GOA:Q6NDE7" FT /db_xref="InterPro:IPR018130" FT /db_xref="UniProtKB/TrEMBL:Q6NDE7" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25605.1" FT /translation="MGLFAKITTASDPRTARIAGILLMLLAMLAFSFADAAGKTVVAIY FT SVGQLLVLRALAGLLVLSPLIWRQRKAFLQLERPGLQLARTLIAACEVAVFYLATAYLP FT LADVITFYLASSLFVSVGAALFLGETIDRPRGIAIVVGFVGVLIALQPSTQTMSWPALI FT AILASVLFAGLLLLTRFLRQTPDMVLASQQFAGTLLLGLVLAPSGWITPSATDLVWFAI FT SGAVSAVGLLCVNRSLRLAPASVVVPYQYTMIIFAAAFGWLLFGDVPSRATVAGVAIII FT AAGLYLGWRERSTSRPPVGG" FT misc_feature complement(order(179670..179720,179751..179816, FT 179838..179894,179907..179972,179994..180059, FT 180075..180131,180153..180209,180222..180287, FT 180348..180413,180426..180476)) FT /note="10 probable transmembrane helices predicted FT byTMHMM2.0" FT sig_peptide complement(180426..180536) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.999) with cleavage site probability FT 0.732 atresidue 37" FT CDS 180688..181749 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0162" FT /product="possible GTP-binding proteins" FT /function="InterPro FT IPR001687:IPR005225:IPR006073:IPR006074:IPR006169 COGs FT COG0536" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDE6" FT /db_xref="InterPro:IPR006074" FT /db_xref="UniProtKB/TrEMBL:Q6NDE6" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25606.1" FT /translation="MKFLDEAKVYIRSGDGGNGCVAFRREKFIEFGGPNGGNGGRGGDI FT IVEAADGLNTLIDYRYQQHFKAQKGGNGMGSDRHGAGGKDIVMKVPVGTQIFDEDKETL FT IHDFTKVGERFVLAKGGNGGFGNAHFKSSTNRAPRHANPGLPGEERWIWLRLKLIADAG FT LVGLPNAGKSTFLSKVSAAKPKIADYPFTTLHPQLGVVNSDGREFVLADIPGLIEGAHE FT GAGLGDRFLGHIERCRVLLHLIDATCEHAGKAYKTVRGELEAYAETLVDKIEIVALNKI FT DAVEPDELKKQKDRLKRAAKKTPLLLSGVTGQGVPEALRALVAVIGEAPVSDKAIGTAD FT NPAEAKPWAPQDA" FT CDS 181888..183018 FT /codon_start=1 FT /transl_table=11 FT /gene="proB" FT /locus_tag="RPA0163" FT /product="glutamate 5-kinase" FT /function="InterPro IPR002478:IPR005715 COGs COG0263" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDE5" FT /db_xref="InterPro:IPR002478" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDE5" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25607.1" FT /translation="MASPKLHDFRHIVVKVGSSLLIDSAAGEVRAGWLAALAADIAELH FT RGGRDVMVVSSGSIALGRSRLKLPRGPLKLEESQAAAAVGQIELARTWSEVLGAHGIGA FT GQILVTFQDTEERRRYLNARSTIAKLLEWRAVPVINENDTVATTEIRYGDNDRLAARVA FT TMASADLLILLSDIDGLYTAPPGSNPDATLIPVVEAITAEIEGMAGAAGSELSRGGMRT FT KIEAAKIATSAGTHMLIASGKIDHPLKAIADGGKCTWFLTPANPVTARKRWIAGTLEPK FT GTLTIDAGAVSALRAGKSLLPAGVIRVDGQFSRGDAVIVRGPDTHEIGRGLVAYDAEDA FT EKIKGHSSPDVMMILGITGRAEMIHRDDLVVGTAPT" FT CDS 183222..184514 FT /codon_start=1 FT /transl_table=11 FT /gene="proA" FT /locus_tag="RPA0164" FT /product="gamma-glutamyl phosphate reductase" FT /function="InterPro IPR000965:IPR002086 COGs COG0014" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDE4" FT /db_xref="InterPro:IPR012134" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDE4" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25608.1" FT /translation="MTASLKAIDGSAELTTLMTDLGRQARAAARTLALAPPEQKNRALE FT AMERAIRAGADKILAANAEDVADAKAAGTTSAFLDRLTLTPARVEAMAEGIAVVRGIAD FT PVGTVTESWQRPNGMTIERVRVPLGVVAVIFESRPNVAADAGVLCLKSGNAVILRGGSE FT SFRSCRAIHDRLVQGLREAGLPDAAITLVPTRDRAAVGLLLAGLDGSVDVIVPRGGKSL FT VARVESEARVPVFAHLEGVNHVYVDRSADLEMAKSIVLNAKMRRTGVCGAAETLLIDRA FT AATTHLAPLVTMLIDSGCEVRGDQTVQQVDPRVKPASDEDWDTEYLDAVIAAKLVDGVD FT GAIVHIHNHGSHHTDAIVAEDAQAAAKFLGEVDSAIVLHNASTQFADGGEFGFGAEIGI FT ATGKFHARGPVGAEQLTTFKYRIHGSGQTRP" FT CDS 184539..185168 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0165" FT /product="possible nicotinate-nucleotide FT adneylyltransferase" FT /function="InterPro IPR004820:IPR005248 COGs COG1057" FT /db_xref="GOA:Q6NDE3" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/TrEMBL:Q6NDE3" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25609.1" FT /translation="MTTDLAAARRAIPPFAPGMRIGLLGGSFNPPHLAHRAISQFAIKR FT LKLDRVWWLVSPGNPLKDISSLREIDARVAAAQAIADDPRIQVSRLEAVIGTRYTADTL FT RYLRRHCPGARFVWIMGADNLAQFHRWQQWQQIAAEIPIAVIDRPPTSFRALAAPAAQR FT LMRMRIPNNKAATLADREPPAWVYLTGLKSLVSSTALRNPDGSWKT" FT CDS 185539..185835 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0166" FT /product="Iojap-related protein" FT /function="InterPro IPR004394 COGs COG0799" FT /db_xref="InterPro:IPR004394" FT /db_xref="UniProtKB/TrEMBL:Q6NDE2" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25610.1" FT /translation="MKAEETVTIDLRGKSAMFDYVVVTTGRANRHVGAIAENVVKALKQ FT AGIAAPHVEGLPNCDWVLIDSGDVVLHVFRPEVREFYNLERLWTQGPSPAKTL" FT CDS 185925..186407 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0167" FT /product="DUF163" FT /function="InterPro IPR003742 COGs COG1576" FT /db_xref="GOA:Q6NDE1" FT /db_xref="InterPro:IPR003742" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDE1" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25611.1" FT /translation="MRLLILAVGKLKQGPERELAERYRARFDDLGRKLGFRGLDVHEIA FT ESRAREAPARMAEEAAAIIAQVPDGAVLVTLDERGQSLGSTAFAAQLGRWRDEQVPGTI FT FVIGGADGLLPELRRKAKLSMSFGGATWPHQMVRVMLLEQIYRAATILAGHPYHRA" FT CDS 186427..187818 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0168" FT /product="putative filament-A precursor" FT /function="InterPro IPR002886 COGs COG0739" FT /db_xref="GOA:Q6NDE0" FT /db_xref="InterPro:IPR016047" FT /db_xref="UniProtKB/TrEMBL:Q6NDE0" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25612.1" FT /translation="MHAPRNTAAKHHVAAGSWRPAVLLSAGLAAGLWANDVARPNGVLI FT SSAKAQAAPAATTTAPSMADLIKQHEQELEAARAQQKSAAEQQDKLKADLAAIGADRTK FT LNQELIDVAAKVRAVETRISDAEARLRPLDAREAEIRTSLDARRGEIGEVLAALQRAGR FT RAPPALLVRPEDALESLRTAILLGAVVPELRTRAERLATDLGELIAVRQKIAAERDQLA FT ADRSHLTTDQTRLAALVEERQRQQSAVEKDIEAERGRALTLSRQVDSLQGLIAKMEQDL FT KSAAKAAAAADQKGAPAAGKANLAALKDPGRLSPAIAFASAKGMLPLPVNGTKIREFGR FT PDGVGGVERGISLSTRAGAQITTPCDGWVVYAGPFRSYGQLLILNAGGGYHVLIAGMER FT ISVNIGQFVLTGEPVATMGSTSRVASILAANASQPVLYVEFRKDGTPIDPGPWWAANEG FT EKVRG" FT sig_peptide 186427..186531 FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.729) with cleavage site probability FT 0.564 atresidue 35" FT CDS 187815..189191 FT /codon_start=1 FT /transl_table=11 FT /gene="ctpA" FT /locus_tag="RPA0169" FT /product="putative periplasmic carboxyl-terminal processing FT protease" FT /function="InterPro IPR001478:IPR003581:IPR004447 COGs FT COG0793" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDD9" FT /db_xref="InterPro:IPR001478" FT /db_xref="UniProtKB/TrEMBL:Q6NDD9" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25613.1" FT /translation="MMRKTSVILLSAVTGAALTLFVTQPRTMLMGATARAATSDTYRQL FT NLFGDVFERVRSDYVEKPDDSKLVESAISGMLAGLDPHSSYMDAKSFRDMQVQTRGEFG FT GLGIEVTMEDGLIKVVSPIDDTPASKAGILANDIITNLDDEAVQGLTLNQAVEKMRGPV FT NTKIRLKIVRKGQDNPIEVTLVRDNIRVRSVRARVEDSDIGYIRITTFNEQTTEGLKKE FT IANLTNQIGADKLKGFILDLRNNPGGLLEEAVTVSDAFLDRGEIVSTRGRNAEETQRRS FT AHAGDLTKGKPVIVLINGGSASASEIVAGALQDHKRATVVGTRSFGKGSVQTIIPLGSG FT NGALRLTTARYYTPSGKSIQAKGITPDIEVMQDVPADLKARTDTKGEASLRGHLKGADG FT DEKTGSQSYVPPEAKDDKALKAAADLLHGIKVNASAPADKQTTGDKAAIDKPAGNKAAN FT " FT sig_peptide 187815..187925 FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 1.000) with cleavage site probability FT 0.872 atresidue 37" FT misc_feature 187833..187886 FT /note="1 probable transmembrane helix predicted byTMHMM2.0" FT terminator 189226..189245 FT /note="TransTerm prediction, 98+%" FT CDS 189342..190580 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0170" FT /product="conserved hypothetical protein" FT /function="COGs COG2861" FT /db_xref="InterPro:IPR006837" FT /db_xref="UniProtKB/TrEMBL:Q6NDD8" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25614.1" FT /translation="MAADELSTPLGQKRNRWQRLRHYRLPFNATQGIAALLGLFVLTFL FT GFALFGNDPFGGEPVVRVEIKAGPEEAKQAAAEAGKDQGGKPENAAAAGAEKKDAEPKD FT AAAGQKTITIIDGSKGTRQDVVVGTDSPDKAEPPAGPTTSDGINPKLLEQSRYGMIPVM FT AGGLKPFSAYAMTTDADRAKAERMPTVTIVVGGLGIGAARTNDAVMKLPAAVALAFTPY FT GSDPGKLATEARAKRHEVILQIPMEPFDYPDNDPGPQTLLTSSAPEQNLDRLNWHLSRI FT QGYVGLSNFMGARFVATEPAMQAVIRDAAKRGLGYLDDGTAPRSVAGTLAKSLAIPFVR FT ADLTIDQVPAGADIDKSLARLESIAKERGSAVGMASALPVTIERIVNWSKSLESRGILL FT APLTTAMLKSKSS" FT misc_feature 189414..189482 FT /note="1 probable transmembrane helix predicted byTMHMM2.0" FT CDS 190619..191125 FT /codon_start=1 FT /transl_table=11 FT /gene="invA1" FT /locus_tag="RPA0171" FT /product="putative dinucleoside polyphosphate hydrolase FT (AP4A pyrophosphatase) (invasion protein A, NUDIX family, FT NUDH subfamily." FT /function="InterPro IPR000086 COGs COG0494" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:P61786" FT /db_xref="InterPro:IPR020084" FT /db_xref="UniProtKB/Swiss-Prot:P61786" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25615.1" FT /translation="MARYEDLPYRTCVGVMLINREGLVFIGRRAGGIEHVDDTHVWQMP FT QGGVDPGEDTWKAAKRELYEETSVNSVEKLAEVPDWLIYDIPRTVAGRAWKGRYRGQRQ FT KWFAARFTGADSEINVVHPGGGHKAEFTSWRWEPMHNLPELIVPFKRPVYERVVKEFSQ FT LAAAV" FT CDS complement(191262..192332) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0172" FT /product="unknown protein" FT /db_xref="UniProtKB/TrEMBL:Q6NDD6" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAE25616.1" FT /translation="MTTPVDTSKLRILEIGGGYFKLQYPERTTCLWTWTKLTDDFGKLD FT GFSTPDRVLRELRAAGRGEYDVVVVNSLRYSPWHPRYWARGIFYTPANPWAALTRQFGP FT SVFRWVKSPVPVVAVEMDDHFAISKSSVFLLDKAEAYFKRELPCDKWQALAGTVHPHLP FT TLRYRRSEKWQRRIDKLQPISLPQFRFDPRWRDAPFPEKTHDIFFIGSVDGNSTVRRDG FT LPELERLRAAGVRIDQPTERLPYDAFMERMSHSWLAWSPEGMGWDCYRHYEAPIVQSVP FT LMNNPTILRYAPLLSGQHGVYYDVEPGGLERAVTSALADKDNLRRMALAARDHVFAHHT FT VKAHCDHILQAAMAAR" FT CDS 192604..193551 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0173" FT /product="putative sugar nucleotide dehydratase" FT /function="InterPro IPR001509 COGs COG0451" FT /EC_number="4.2.1.46" FT /db_xref="GOA:Q6NDD5" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q6NDD5" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25617.1" FT /translation="MRLSRRILVSGGAGFIGSHLCDKLLAEGHEVLCVDNYFTGWRRNI FT EHLVGTPRFEVMRHDVTFPLYVEVDDIYNLACPASPVHYQHDPVQTLKTSVHGAINMLG FT LAKRTRAKIFQASTSEVYGDPNVHPQPESYWGHVNPLGIRACYDEGKRAAETLFFDYHR FT QHKVKIKVARIFNTYGPRMHPNDGRVVSNFIVQALSGNDITIYGDGSQTRSFCYVTDLL FT DGFARLMATGDEFIGPVNLGNPVEFTIRQLAEMVIEMTDSRSKLVMMPLPSDDPRQRQP FT DISLARRELGWEPKVPLADGLKETIGYFRTLMAS" FT CDS 193548..194069 FT /codon_start=1 FT /transl_table=11 FT /gene="invA2" FT /locus_tag="RPA0174" FT /product="putative dinucleoside polyphosphate hydrolase FT (AP4A pyrophosphatase) (invasion protein A, NUDIX family FT hydrolase, NUDH subfamily." FT /function="InterPro IPR000086 COGs COG0494" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDD4" FT /db_xref="InterPro:IPR020084" FT /db_xref="UniProtKB/TrEMBL:Q6NDD4" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25618.1" FT /translation="MTSRPPIASLPYRRNVGIALFGSDGRVLIGRRFRDDGPEIILPGL FT EWQMPQGGIDEGEEPRIAVMRELWEETGVTNAEMLGETDWVSYDFPPYEGPPHRLAVFR FT GQRQKWFALRFTGSETEIDPLAVRNDMPPEFDSWRWERLDRVADLVVPFRREVYREVAR FT SFARFTAAQA" FT CDS complement(194253..194660) FT /codon_start=1 FT /transl_table=11 FT /gene="atpC" FT /locus_tag="RPA0175" FT /product="putative H+-transporting ATP synthase epsilon FT chain." FT /function="InterPro IPR001469 COGs COG0355" FT /EC_number="3.6.3.14" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDD3" FT /db_xref="HSSP:1AQT" FT /db_xref="InterPro:IPR001469" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDD3" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25619.1" FT /translation="MSTFHFDLVSPEMVAFSGDVDQVDIPGAEGDFGVLAGHAPVVAVI FT RPGILTVTAGANKQKIVVLGGIAEVSDKGLTVLADVATPAPDVDLQDFAATIQTMEQQI FT PGKVGDELDRAIERLDHFKSIQHELNTTAMH" FT CDS complement(194774..196204) FT /codon_start=1 FT /transl_table=11 FT /gene="atpD" FT /locus_tag="RPA0176" FT /product="putative H+-transporting ATP synthase beta FT chain." FT /function="InterPro FT IPR000194:IPR000793:IPR001687:IPR003593:IPR004100:IPR005722 FT COGs COG0055" FT /EC_number="3.6.3.14" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDD2" FT /db_xref="InterPro:IPR004100" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDD2" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25620.1" FT /translation="MATPANQTGRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVL FT EVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGAPISVPVGAGTLGRIMNVIGEPVDEQG FT PIKSEGLRAIHQEAPAYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVL FT IQELINNVARAHGGYSVFAGVGERTREGNDLYHEFIESGVNKKGGGEGSKCALVYGQMN FT EPPGARARVGLTGLTVAEHFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQP FT TLATDMGALQERITTTTKGSITSVQAIYVPADDLTDPAPATSFAHLDATTVLNRAISEK FT GIYPAVDPLDSTSRMLSASIVGEEHYNTARMVQQILQKYKSLQDIIAILGMDELSEEDK FT LTVARARKIERFLSQPFFVAEVFTGSPGKFVDLADTIKGFRAICEGKYDHLPEAAFYMV FT GTIEEAVEKGKKLAAEAA" FT CDS complement(196276..197151) FT /codon_start=1 FT /transl_table=11 FT /gene="atpG" FT /locus_tag="RPA0177" FT /product="putative H+-transporting ATP synthase gamma FT chain." FT /function="InterPro IPR000131 COGs COG0224" FT /EC_number="3.6.3.14" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDD1" FT /db_xref="InterPro:IPR000131" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDD1" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25621.1" FT /translation="MASLKDMRVRIASTKATQKITKAMQMVAASKLRRAQMAAEAARPY FT AEKMEAVISNIAGAAAGSPGAPVLLAGNGKDQVHLLLVCTGERGLSGAFNSSIVRLARE FT RAYELMSQGKTVKFFCVGRKGYEQLRRNFEKQIIDNVELRSVRQIGFVNAEDIAKKVIA FT RFNAGEFDVCTLFYSRFKSVISQIPTAQQLIPLEVTAPAAGTVATSYEYEPEEDEILSG FT LLPRNLAVQIFRALLENNASFYGAQMSAMDNATRNAGEMIRKQTLVYNRTRQAMITKEL FT IEIISGAEAI" FT CDS complement(197295..198827) FT /codon_start=1 FT /transl_table=11 FT /gene="atpA" FT /locus_tag="RPA0178" FT /product="putative H+-transporting ATP synthase alpha FT chain." FT /function="InterPro FT IPR000194:IPR000790:IPR000793:IPR001687:IPR004100:IPR005294 FT COGs COG0056" FT /EC_number="3.6.3.14" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDD0" FT /db_xref="InterPro:IPR000194" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDD0" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25622.1" FT /translation="MDIRAAEISAILKDQIKNFGQEAEVSEVGQVLSVGDGIARVYGLD FT NVLAGEMVEFENGTRGMALNLETDNVGVVIFGADREIKEGQTVKRTRSIVDAPVGKGLL FT GRVVDALGNPIDGKGPIQAVERKRVDVKAPGIIPRKSVHEPMATGLKSIDALIPIGRGQ FT RELIIGDRQTGKTAIALDTILNQKPLNVEGAPESQKLYCVYVAVGQKRSTVAQFVKVLE FT EQGALEYSVVVAATASDPAPMQYIAPFTGCTIGEYFRDNGMHAVIIYDDLSKQAVAYRQ FT MSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDEQGNGSLTALPVIETQANDVSAYIP FT TNVISITDGQIFLETDLFFQGIRPAVNVGLSVSRVGSSAQTKAMKKVAGKIKGELAQYR FT EMAAFAQFGSDLDAATQRLLNRGSRLTELLKQPQFSPLKMEEQVCVIWAGTNGYLDALP FT LNKVRAFEDGLLALLRGKESGILEAIRTSRDLSDDTAAKLKAVVESYAKTFA" FT CDS complement(198827..199387) FT /codon_start=1 FT /transl_table=11 FT /gene="atpH" FT /locus_tag="RPA0179" FT /product="putative H+-transporting ATP synthase delta FT chain." FT /function="InterPro IPR000711 COGs COG0712" FT /EC_number="3.6.3.14" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDC9" FT /db_xref="InterPro:IPR000711" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDC9" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25623.1" FT /translation="MASEDPSVSGVSGRYATALFELARDEKSIDAVTADLDKFSAMLAG FT SPDLVRLVRSPVFASEVQGKALAAVLDKAGITGISANFLKVLAANRRLFVVADVIRAYR FT ALVAKFKGEATADVTVAEKLSDKNLEALKAALKSVTGKDVALNINVDPAIIGGLVVKLG FT SRMVDSSLRTKLNSIKHAMKEAG" FT CDS 200091..200561 FT /codon_start=1 FT /transl_table=11 FT /gene="rlpA1" FT /locus_tag="RPA0180" FT /product="Rare lipoprotein A" FT /function="InterPro IPR005132 COGs COG0797" FT /db_xref="InterPro:IPR012997" FT /db_xref="UniProtKB/TrEMBL:Q6NDC8" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25624.1" FT /translation="MVRKKTPALLTTGPAAAAAMIVASVFLGGSVGEASAKSRHHRHHH FT HSHHSDWRSANASVESSGGRSFSGMASYYGNESGSRTASGQRMNANAMTAAHRTLPFGT FT KLRVTHGGRSVVVTINDRGPFIRGRVLDLSTGAARAIGLTSRGVGRVVAEVM" FT sig_peptide 200091..200162 FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.999) with cleavage site probability FT 0.182 atresidue 24" FT misc_feature 200118..200186 FT /note="1 probable transmembrane helix predicted byTMHMM2.0" FT terminator 200660..200685 FT /note="TransTerm prediction, 98+%" FT CDS complement(200717..202927) FT /codon_start=1 FT /transl_table=11 FT /gene="priA" FT /locus_tag="RPA0181" FT /product="putative priA family helicase (primosomal protein FT N', replication factor Y)" FT /function="InterPro IPR001410:IPR001650:IPR001687:IPR005259 FT COGs COG1198" FT /db_xref="GOA:Q6NDC7" FT /db_xref="InterPro:IPR005259" FT /db_xref="UniProtKB/TrEMBL:Q6NDC7" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25625.1" FT /translation="MDDLPTSSPASHAPASVVDVLVPVAIDQAYSYRVPRGLSLKPGDV FT VAVPLGAREVLGVVWAENPNPDPRLHNRLKDVAEKLDVPPLRDELRRMVDWVSTYTLSA FT RGMVLRMCLRMGEHLGPERQRMGVRLVGSPPQRMTPARRRLLEILSDGLLHGKSDVAKE FT AGVSPGVIDGLVDEGTLQVEPMPRENPAPEPDPDFAPADFSPEQARAAETMRGLVTAGG FT FQAALIDGVTGSGKTEVYFEAVAEVVRQGRQSLILMPEIALTGQFLDRFAQRFGVRPLE FT WHSELTPRTRARNWASIAAGEARVVVGARSSLFLPYADLGLIIVDEEHDQAYKQEDGAH FT YHARDMAVVRASIAKIPIVLASATPSVETEVNARKGRYTRIPLPSRFGGQHMPQIEAID FT LRREPPMRGRFISPRLAEQIGFAIERGEQALLFLNRRGYAPLTLCRACGHRFACTICDA FT WLVDHRFRQRLVCHHCGFSMPRPPACPHCGAEGSLVAVGPGVERLQEEAANLFPNARTM FT VLSSDLITSIETMRAELNEIAEGRVDIIIGTQLVAKGHNFPRLNLVGVVDADLGLSNGD FT PRAAERTFQLLNQVIGRAGRDQGRGVGFLQTHQPEHPVMKALIACDREAFYASEIDIRE FT RTLYPPFGRLASLIISAGDRPTAEGFGRQLASAAPFDERVQVLGPAEAPLAVIKGRYRF FT RLLVKSVRGFDLSNYLRSWLAKGPKTKGNLKLEVDVDPQSFL" FT CDS 202981..204096 FT /codon_start=1 FT /transl_table=11 FT /gene="xerC" FT /locus_tag="RPA0182" FT /product="putative site-specific recombinase, FT INTEGRASE/RECOMBINASE RIPX (xerC)" FT /function="COGs COG0582" FT /db_xref="GOA:Q6NDC6" FT /db_xref="HSSP:1A0P" FT /db_xref="InterPro:IPR013762" FT /db_xref="UniProtKB/TrEMBL:Q6NDC6" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25626.1" FT /translation="MIAASSPRHCEEQSDEAIQRPNALSSWNCFASLAMTAVAHHPMTD FT ELAMAPSKSAPPPLELSCAAADLTAEMTKWLSHLRAERRLSGKTLEAYARDVRQFLQFL FT AGHWGGEVTLGRFARLEATDVRAFMAARRADEIAGRSLMRALAGMRSFGRFLEREGKGR FT VGALASVRAPKIKKSLPKPLPIAAAKRLADADERAGEERETWVLIRDAAVMALLYGSGL FT RISEALGLKRRDVPAPGKGDTLIVHGKGNKTRMVPVLQNVLAQIAEYAAACPYNLPPDG FT PMFVGARGGPLSPRIIQLAMERLRGGLGLPDSATPHALRHSFATHLLSRGGDLRAIQEL FT LGHASLSTTQVYTGIDTERLLEVYNSAHPRA" FT misc_feature 202981..204096 FT /note="IS element" FT /inference="non-experimental evidence, no additional FT details recorded" FT CDS 204237..204827 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0183" FT /product="unknown protein" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="UniProtKB/TrEMBL:Q6NDC5" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAE25627.1" FT /translation="MGAHESMEHAEHAEHASGSNKGIALLISVIALFLAFSETLGKGAQ FT TEALAKNVEASNLWAFFQAKSIRRTTVQAVSEHARLSLGTVPDEATKAALQKQIDDWQK FT TAARYRSEPETGEGSEQLAERAKHAEHERDLAMARYHHYEVASAAFQIGIVLASATIIT FT GMMVLAWLSGLLAVGGLGFMAIGLFAPHAVHLM" FT misc_feature order(204300..204359,204675..204743,204753..204821) FT /note="3 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS complement(204891..205433) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0184" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q6NDC4" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25628.1" FT /translation="MKGRLWQPLWVLLAVLFLIEAWFWDHVEPLIARIVALIPLRELKE FT RLARWVDHLSPAMTLPVFLVPVAPLYPLKLFALALIAQGHWVAGLGIFAAAQVFGLGVA FT AFIFDVTKPKLLQLRWFAATYRWVIELRAKAHAIVAPIMAQIRAKLAELLKGDGDGWGS FT KVLRRIGALRRRIRTAR" FT misc_feature complement(order(205110..205175,205197..205262, FT 205362..205418)) FT /note="3 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS complement(205473..206876) FT /codon_start=1 FT /transl_table=11 FT /gene="dldH" FT /locus_tag="RPA0185" FT /product="dihydrolipoamide dehydrogenase, E3 component of FT 2-oxoglutarate and pyruvate dehydrogenase complexes" FT /function="InterPro FT IPR000205:IPR001100:IPR001327:IPR004099:IPR006258 COGs FT COG1249" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDC3" FT /db_xref="InterPro:IPR006258" FT /db_xref="UniProtKB/TrEMBL:Q6NDC3" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25629.1" FT /translation="MATYDLVVIGTGPGGYVCAIRAAQLGLKVAVVEKNATLGGTCLNV FT GCMPSKALLHASELFEEAGHSFAKMGIGVSAPKLDLPAMMNFKQQGIDGNVKGVEYLMK FT KNKIDVLVGKGKILGTGKVEVTGADGKATSVEAKSIVIASGSAVAQLKGIEIDEKRVVS FT STGALSLDKVPGKLIVVGAGVIGLELGSVWRRLGAEVTVVEFLDRILPGMDGEVVKQFQ FT RILEKQGFAFKLGAKVTGVDTSGAKLAVKVEAAAGGNPETLEADVVLVAIGRVPYTEGL FT GLKEAGVALDERGRVVIDDHFATSLKGVYAIGDVVRGPMLAHKAEDEGVAVAELIAGKA FT GHVNYDVIPGVVYTTPEVSSVGKTEEDLKQAGVAYTVGKFPFTANGRSKVNQTTDGFVK FT ILADAKTDRVLGVHIIGREAGEMIHEAAVLMEFGGSAEDLARTCHAHPTRSEAIKEAAL FT TVGKRAIHM" FT CDS complement(206908..207654) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0186" FT /product="putative short-chain dehydrogenase/reductase" FT /function="InterPro IPR002198:IPR002347 COGs COG1028" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDC2" FT /db_xref="HSSP:1AHI" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q6NDC2" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25630.1" FT /translation="MNDRVVIITGGSRGIGRATALGCAKRGFKVVVGYASNAAAADEVV FT AEIAASNGKAIAVKCDVGSEADILALFAAADAFGPLGALVNNAGIVGPTARVDEMSAER FT IQRMMAVNVTGSILCAREAVKRMSTRHGGKGGVIVNLSSVAAKLGSPNTYVDYAASKGA FT VDSFTVGLGHEVAGEGIRVAAIRPGLIDTEIHASGGDPERAHRLSVNVPMKRVGRAEEI FT ANAVVWLLSDEASYVTSAIIDVSGGR" FT CDS complement(207662..208111) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0187" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q6NDC1" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25631.1" FT /translation="MPAACSCAPPLTLGETMPPMPTEITVLGWSVVLLIVQMFLASIPT FT TMELGGDYQAGPRDELRTPTGRFAGRANRAFRNLLETYPAFVGLALALAITGKAGGYAA FT TASVVWLIARTLYAPLYIVEIPFARSIVWFVSLLALIAMLVRLLS" FT misc_feature complement(order(207668..207721,207743..207808, FT 207821..207886,207983..208039)) FT /note="4 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS complement(208123..209376) FT /codon_start=1 FT /transl_table=11 FT /gene="sucB" FT /locus_tag="RPA0188" FT /product="dihydrolipoamide succinyl transferase" FT /function="InterPro FT IPR000089:IPR000104:IPR001078:IPR003016:IPR004167:IPR006255 FT COGs COG0508" FT /EC_number="2.3.1.61" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDC0" FT /db_xref="HSSP:1B5S" FT /db_xref="InterPro:IPR003016" FT /db_xref="UniProtKB/TrEMBL:Q6NDC0" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25632.1" FT /translation="MTEIRVPTLGESVTEATIGRWFKKPGEAVAVDEPLVELETDKVTI FT EVPAPSAGTLGEIVAKDGETVAVGALLGQITDGAAPAKPAAAAPAKAAAPAAAPAPAAP FT APAAAPAAKAPPSDAPLAPSVRRLSTESGVDASTVPGSGKDGRVTKGDMLAAIEKAASA FT PTPVNQPAAAVQVRGPSPADDAAREERVKMTRLRQTIARRLKEVQNTAAMLTTFNEVDM FT TNVMALRAQYKDVFEKKHGAKLGFMGFFTKACVQALKDIPAVNAEMDGTDLIYKNYYHI FT GVAVGTDKGLVVPVVRDCDEKSIADIEKSIVDYGKRARDGQLKIEEMQGGTFTITNGGI FT YGSLMSTPILNAPQSGILGMHKIQERPVVIGGKIEVRPMMYLALSYDHRVIDGKEAVTF FT LVRVKESLEDPARLVLDL" FT CDS complement(209481..212438) FT /codon_start=1 FT /transl_table=11 FT /gene="sucA" FT /locus_tag="RPA0189" FT /product="putative alpha-ketoglutarate dehydrogenase (E1 FT subunit)" FT /function="InterPro IPR001017:IPR005475 COGs COG0567" FT /EC_number="1.2.4.2" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDB9" FT /db_xref="InterPro:IPR011603" FT /db_xref="UniProtKB/TrEMBL:Q6NDB9" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25633.1" FT /translation="MSRQDANAAFALSSFLQGANATYIDDLYSRYESDPSSVDADWQAF FT FRSLKDAPGDIQKNAEGPSWEQANWPLTPRDELTSALDGNWNQVEKAVGQKIQAKAQSR FT GVELSSADVLQATRDSVRALMLIRAYRMRGHFHAKLDPLGLSPAKDHEELDIRSYGFTE FT ADLDRKIFLDHVLGLEYGSLREIVAICERTYCQTMGIEFLHISNGAQKAWIQERIEGPD FT KEISFTREGRRAILMKLIESEGFEKFCDLKFTGTKRFGLDGGEALIPALEQIIKRGGNL FT GVREIVLGMPHRGRLNVLTQVMAKAHRALFHEFKGGSANPDEVEGSGDVKYHLGASSDR FT EFDHNKVHLSLTANPSHLEIVDPVVLGKVRAKQDQHGDLPEERISVLPLLMHGDAAFAG FT QGVVAECFALSDLKGYRTGGSIHFIVNNQIGFTTYPRYSRSSPYPSDVAKMIDAPIFHV FT NGDDPEAVVFAAKIAVEYRQKFHKPVVIDMFCYRRHGHNEGDEPSFTQPLMYRKIAGHP FT TTLEIYSKRLIADGVITEGEVEKARADWRARLDAEFEAASSYRPNKADWLDGKWAGFKS FT ADQEEEPRRGITGVDLPTLKEIGRRITKVPEGFRLHRTVQRFLENRARAIDSGNGLDWA FT TGEALAFCTMLLEGHRIRLSGQDSERGTFSQRHSVLIDQEDETRYTPFNHLSPDQGHYE FT VINSLLSEEAVLGFEYGYSLAEPNALTLWEAQFGDFANGAQVLFDQFISSGERKWLRMS FT GLVCLLPHGYEGQGPEHSSARLERYLQMCAEDNMQVVYPTTPANYFHALRRQLKREIRK FT PLILMTPKSLLRHKRAISRLEELGPDTSFHRVLLDDAQTLPDDKTKLVADAKIRRVVVC FT SGKVYYDLYDEREKRGIDDVYLLRVEQLYPVPVKTLVHELSRFKDAELVWCQEEPRNMG FT GWHFIEPYLEWVQNQIEAKHRRPRYVGRAASAATATGLMSKHLAQLKAFLDEALR" FT sig_peptide complement(212382..212438) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.704) with cleavage site probability FT 0.349 atresidue 19" FT CDS complement(212566..213450) FT /codon_start=1 FT /transl_table=11 FT /gene="sucD" FT /locus_tag="RPA0190" FT /product="succinyl-CoA synthetase alpha-subunit" FT /function="InterPro IPR003781:IPR005810:IPR005811 COGs FT COG0074" FT /EC_number="6.2.1.5" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDB8" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q6NDB8" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25634.1" FT /translation="MSILIDSNTRVICQGFTGKNGTFHSEAAIAYGTKMVGGTSPGKGG FT STHLGLPVFDTVREARDKTGADASVIYVPPPGAADAICEAIDAEIPLIVCITEGIPVLD FT MVRVKRSLNGSKSRLIGPNCPGVMTAGECKIGIMPANIFKPGSVGIVSRSGTLTYEAVF FT QTSAEGLGQTTAVGIGGDPVKGTEFIDVLEMFLADDNTESIIMIGEIGGSAEEDAAQFL FT IDEAKRGRKKPMVGFIAGVTAPPGRRMGHAGAIISGGKGDAASKTAAMEAAGITVSPSP FT ARLGKTLAEKLKS" FT CDS complement(213515..214711) FT /codon_start=1 FT /transl_table=11 FT /gene="sucC" FT /locus_tag="RPA0191" FT /product="succinyl-coA synthetase beta chain" FT /function="InterPro IPR003135:IPR005809:IPR005811 COGs FT COG0045" FT /EC_number="6.2.1.5" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDB7" FT /db_xref="InterPro:IPR016102" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDB7" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25635.1" FT /translation="MNIHEYQAKAVLREFGVPVGHGFPIFKASEAEAAAKQLGGPVWVV FT KSQIHAGGRGKGKFKEASAGDKGGVRLAKSIDEVKEFAKQMLGATLVTVQTGADGKQVN FT RLYIEEGSDIDKEFYLSLLVDRATSRISFVVSTEGGMSIEDVAHETPEKIVSFTVDPAT FT GIMGHHGRTVAKALNLKGEQAKQAEAMVAKLYTAFVAKDMDMLEINPLVLTKQGDLKCL FT DAKISFDGNALYRHTDIQALRDETEEDAKEIEASKYDLNYVTLDGTIGCMVNGAGLAMA FT TMDIIKLYGMSPANFLDVGGGASKEKVTAAFKIITADPNVKGILINIFGGIMKCDVIAE FT GVVAAVKEVGLDVPLVVRLEGTNVEAGKKIIKHSGLNVLPADNLDDAAQKIVAAVKGA" FT CDS complement(214807..215775) FT /codon_start=1 FT /transl_table=11 FT /gene="mdh" FT /locus_tag="RPA0192" FT /product="malate dehydrogenase" FT /function="InterPro IPR001236:IPR001557 COGs COG0039" FT /EC_number="1.1.1.37" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:P80458" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/Swiss-Prot:P80458" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25636.1" FT /translation="MARDKIALIGSGQIGGTLAHLVGLKELGDVVLFDIAEGVPQGKAL FT DIAESSPVDGFDSKLTGANSYEAIEGARVVIVTAGVPRKPGMSRDDLLSINLKVMEQVG FT AGIKKYAPDAFVICITNPLDAMVWALQKASGLPAKKVVGMAGVLDSARFRYFLADEFNV FT SVEDVTAFVLGGHGDTMVPLVKYSTVAGIPLPDLVKMGWTSQARLDEIVDRTRNGGAEI FT VNLLKTGSAFYAPASSAIAMAESYLKDKKRVVPVAAHLNGEYGVKDMYVGVPVVIGDKG FT VERIVEIELAGKDKEAFDRSVAAVQGLVEACKKIAPDLLGR" FT CDS complement(215921..217105) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0193" FT /product="AFG1-like ATPase" FT /function="InterPro IPR001687:IPR005654 COGs COG1485" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDB6" FT /db_xref="InterPro:IPR005654" FT /db_xref="UniProtKB/TrEMBL:Q6NDB6" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25637.1" FT /translation="MSSPHSLRQQYQSLIASGSIEADPAQARAVQAFTLLNETLDGYKP FT PKKQGFFGRLFGGGDAGQAPPQGLYIHGEVGRGKTMLMDLFFDASPIALKRRSHFHEFM FT AETHDRINGFRQAIKRGDIPDADVMELTAASILDEAWLLCFDEFHVTDIADAMILGRLF FT TKLFELGTVVVATSNVAPDDLYKGGLNRSLFMPFIGQVKRHMRVIRLDARTDYRLEKFA FT GMKVWLAPDDAEATATIDRAWHRITGTTKGEPRDISIKGRILHVPQADHHVARFSFADL FT CQKPLGASDYLRLAHEYHTLMIDHVPVMDYADRNAAKRFIALIDTLYDNSVKLMASAAA FT EPARLYRATEGFEALEFNRTVSRLTEMGSESYLALPHGRRDSTATGETTGLVET" FT CDS complement(217188..217727) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0194" FT /product="2'_5' RNA ligase" FT /function="InterPro IPR004175 COGs COG1514" FT /db_xref="GOA:Q6NDB5" FT /db_xref="InterPro:IPR014051" FT /db_xref="UniProtKB/TrEMBL:Q6NDB5" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25638.1" FT /translation="MPRLFTGLEIPAEISQTLSSLRGGLPGARWVDPDDYHLTLRFIGD FT IDGVTANEIASTLFRVNRKPFEVTLQGLSSFGGKKPRAVVASVVPSKPLIELQAELERL FT MQRVGLDPEGRKFTPHVTLARLRGDVSSRDVADYLSIRGYFPSKVFKAERFVLYSARAS FT TGGGPYIVEAPYELTA" FT CDS complement(217933..218601) FT /codon_start=1 FT /transl_table=11 FT /gene="tesA" FT /locus_tag="RPA0195" FT /product="putative acyl-CoA thioesterase precursor" FT /function="InterPro IPR001087 COGs COG2755" FT /EC_number="3.1.2.-" FT /db_xref="GOA:Q6NDB4" FT /db_xref="InterPro:IPR008265" FT /db_xref="UniProtKB/TrEMBL:Q6NDB4" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25639.1" FT /translation="MAVEGWARTIALVLGLGIMAALPGQSARAETAAKPLKLVVLGDSL FT TAGYGLPAADAFPAKLQKALKAKGIDTEMVNAGVSGDTASGGLQRLDWSVPPDADAVIV FT DLGANDALRGTDPKVPRKALDEILKRLKARNLPVLLAGMLAPPNYGKDYAAQFDAIYSD FT LAKQYDVPLYPFFLDGVAAVSNLNQADGIHPTAAGVDIIVERILPKVEALLRPLLVQSR FT " FT sig_peptide complement(218512..218601) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.978) with cleavage site probability FT 0.789 atresidue 30" FT CDS 218627..219370 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0196" FT /product="putative ABC transporter, ATP-binding protein" FT /function="InterPro IPR001687:IPR003439:IPR003593 COGs FT COG1136" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDB3" FT /db_xref="InterPro:IPR003439" FT /db_xref="UniProtKB/TrEMBL:Q6NDB3" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25640.1" FT /translation="MDSLIEPSSLAGGAPDSIAISNVNLSLGSGAARVHILKDISLRVG FT AGETIGLIGPSGSGKSTLLMVMAGLERPDSGQVVVDGTSFNGLDEDALARFRGRQIGIV FT FQSFHLIPTMTALENVAVPLELAGQAGAADRAARELTSVGLGERLHHYPSQLSGGEQQR FT VALARALAPDPAILVADEPTGNLDETTGKQIVDLLFAKHAERGMTLVLVTHDSALAQRC FT DRVVRLRSGRIDTTQPGSAARARSA" FT CDS 219374..221944 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0197" FT /product="possible ABC transporter permeases" FT /function="COGs COG3127" FT /db_xref="GOA:Q6NDB2" FT /db_xref="InterPro:IPR003838" FT /db_xref="UniProtKB/TrEMBL:Q6NDB2" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25641.1" FT /translation="MTVLTETPPRTPSWSLPLRYALREMRGGLNGFYVFIACIALGVMA FT IAGVGSVAASLGDGLAREGRTLLGGDAAFSLIQREATPNEVAFLRSRGDVSVAATMRGM FT ARTDDGRSALVELKAVDGAYPLLGDLKLEPPMPVADLLARRDDAFGAAADPALLARLDL FT KIGDKVTIGSATFQIRSAVAAEPDKLSGNIGFGPRFLISDDGLRATQLLQPGSLVRWTY FT RVRLPDNGTDDRAAQRLVDDTRAALPQAGWEIRTRGNASPQLERTITRFTQFLTLVGLA FT ALVVGGVGVANAVKSHIDRRRDVIATLKAVGATGRDVFAIYLTQVIVLALIGAVIGLAL FT GAAMPFALVGLFGQLLPLPVVAALHPGELALSLVYGLLTALAFGLWPLAQVRDVPVATL FT FREAATADSHRPRLRHVALIAAVVAVLLAVVVGLAYDKRVALAVIGATLAIFVLLRGVA FT AGLMAIARRLPRSRITMLRLAIANIHRPGALTPSVVLSLGLGLAVLVTVSQIDGNLRRQ FT FSAALPEKAPTFFFIDIPSSETDQFGTFLRQIAPNATLEDVPMLRGRIVAARGVRVEDL FT KPAPDAEWVLQSDRGLTYAADIPAGSKVVEGRWWPKDYSGPPLVSFDKKLAQGLGLSIG FT DKVTVNVLGREITATISNLRSIDWQSLGINFVLVFSPDTFRGAPHTHIATLTESGSTPQ FT SDAAVIKQVADRFPMVTSVRVREALETVGGVVSNLVLAVRGASAVTLISAILVLGGALA FT AGHRHRVYDAVILKTLGATRARLIGAFALEYALIGLATAAFAVLAGSAAAWLIVTRLMT FT LSFAWQAGSAAGVVVAALVVTVGLGLIGTWLALNQKPASVLRNL" FT misc_feature order(219467..219535,220187..220255,220352..220420, FT 220478..220546,220604..220672,220700..220768, FT 220829..220897,221570..221638,221699..221794, FT 221837..221905) FT /note="10 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS 222285..223076 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0198" FT /product="possible acetate transporter, stationary-phase FT anti-death (SAD) family" FT /function="COGs COG0670" FT /db_xref="GOA:Q6NDB1" FT /db_xref="InterPro:IPR006214" FT /db_xref="UniProtKB/TrEMBL:Q6NDB1" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25642.1" FT /translation="MSDLDRNYTSPFGRAAGRVETATVDAGLRAYMLRIYNYMTIGLAI FT TGLAALGVYMGAVTTDAGAAAARVGNTMLTSFGVAMFVSPLKWVFILAPLAMVFVISFG FT INRLKPATAQLLFWAFSALMGISLSSIFLVYTHTSIVRVFFITAAAFGALSLYGYTTKR FT DMTGMGSFLIMGLFGVVIASLVNLFVASSMLQFIVSVVGVLVFAGLTAWDTQRLKNDYI FT YGYGSMGGDVAERAAITGALSLYLNFINLFTLLLQLLGQKE" FT misc_feature order(222387..222455,222525..222593,222627..222686, FT 222696..222764,222783..222851,222861..222920, FT 222996..223064) FT /note="7 probable transmembrane helices predicted FT byTMHMM2.0" FT terminator 223106..223126 FT /note="TransTerm prediction, 98+%" FT CDS 223231..223761 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0199" FT /product="putative phosphinothricin acetyltransferase" FT /function="InterPro IPR000182 COGs COG1247" FT /db_xref="GOA:Q6NDB0" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:Q6NDB0" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25643.1" FT /translation="MSNALIRPATSADLPAITAIYEQAVRFGTATFELTPPDLAEMTQR FT FATLTEAGFPYLAAEADGAIAGYAYAGPYRPRPAYRFTVENSIYLDPAAHRRGIGSALL FT RDLIAGCTERGFRQMIAVIGDSANAASIALHRKAGFAPIGTHADVGFKFGRWLDSVLMQ FT RTLGDGGRTVPET" FT CDS complement(223821..224189) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0200" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q6NDA9" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25644.1" FT /translation="MDLISGEADPSESRAAERPGTAPLQGLVTFNRLELNRILNLYGRM FT VAAGEWRDYAIDFLKDTAVFSIFRRASEVPIYRIVKDPRLARKQGAYSVIGASGQILRR FT GHELERVLLVIDRKLALV" FT CDS complement(224593..225468) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0201" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR010634" FT /db_xref="UniProtKB/TrEMBL:Q6NDA8" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25645.1" FT /translation="MAGERKAAYAKGRLFVLRLLDGWRRAAVPKHSAKAARQTTMNGVG FT GFSRWSGALGLCVTIATADFAAAEPRAVVELFTSQGCSSCPPADKIIGELARDPSVIAL FT SLPIDYWDYLGWKDTLADSRFTARQKAYSQVRGDRDVFTPQVVVNGSAHLVGSNRAGID FT SAIKTTDKTDGVMTVPVSVAVEGKEIKVSVAAAPQGETAKSGEVWICAVSKAIPIEIGR FT GENRGRHVTYHNVVRNLLKVGDWTGAAEHWTVPLENVVGDGVDAAAVYVQNGSREKPGA FT MLGAAFTSLN" FT terminator complement(225429..225451) FT /note="TransTerm prediction, 98+%" FT CDS complement(225515..228232) FT /codon_start=1 FT /transl_table=11 FT /gene="acnA" FT /locus_tag="RPA0202" FT /product="aconitate hydratase" FT /function="InterPro IPR000573:IPR001030:IPR006249 COGs FT COG1048" FT /EC_number="4.2.1.3" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDA7" FT /db_xref="HSSP:1B0J" FT /db_xref="InterPro:IPR018136" FT /db_xref="UniProtKB/TrEMBL:Q6NDA7" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25646.1" FT /translation="MTSLDSFKCRKILKVGSKSYVYYSLPTAEKNGLKGISRLPYSMKV FT LLENLLRNEDDRTVKKADIMAVAKWMRKKALEHEIAFRPARVLMQDFTGVPAVVDLAAM FT RNAMQKLGGDAEKINPLVPVDLVIDHSVIVNFFGNNQAFKKNVAEEYKQNQERYEFLKW FT GQKAFSNFAVVPPGTGICHQVNLEYLAQTVWTKKEKMTIGRKTGTFEVAYPDTLVGTDS FT HTTMVNGLAVLGWGVGGIEAEAAMLGQPLSMLLPEVVGFKLKGALKEGVTATDLVLTVT FT QMLRKQGVVGKFVEFFGPGLDNLSVADKATIANMAPEYGATCGFFPVDGETIDYLKTSG FT RASARVALVEKYAKAQGLFRTAKSPDPVFTVTLTLDLADVVPSLAGPKRPEGRVALPAV FT AEGFTTAMDAEYKKALDGARYKVEGRNFDIGHGDVVIAAITSCTNTSNPSVLIGAGLLA FT RNAAAKGLKAAPWVKTSLAPGSQVVAEYLANSGLQKDLDKVGFNLVGFGCTTCIGNSGP FT LPEEISKSINDNGIVAAAVLSGNRNFEGRVSPDVQANYLASPPLVVAYALAGSVTKNLA FT VDPIGTGKDGKPVYLKDIWPSTKEINAFVKKYVTSKIFKARYADVFKGDTNWRKIKTVE FT SETYKWNMSSTYVQNPPYFEGMTKQPEPITDVVDARVLALFGDKITTDHISPAGSIKLT FT SPAGKYLTERQVRPADFNQYGTRRGNHEVMMRGTFANIRIKNHMLKGADGNIPEGGLTK FT HWPDGEQMSIYDAAMKYQEEKVPLVVFAGAEYGNGSSRDWAAKGTRLLGVRAVICQSFE FT RIHRSNLVGMGVLPLTFEEGTSWASLGLKGDEKVTIRGLEGDLKPRQMLEAEITSAAGK FT RKRVPLLCRIDTLDELDYYRNGGILHYVLRKLAA" FT CDS 228448..229050 FT /codon_start=1 FT /transl_table=11 FT /gene="cycV, ccmA" FT /locus_tag="RPA0203" FT /product="heme exporter protein A (heme ABC transporter FT ATP-binding protein), cytochrome c biogenesis" FT /function="InterPro IPR001687:IPR003439:IPR003593:IPR005895 FT COGs COG1131" FT /db_xref="GOA:Q6NDA6" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/Swiss-Prot:Q6NDA6" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25647.1" FT /translation="MRLSGRDLRCVRGGREVFAGLAFEASGGEALALVGHNGAGKTSLL FT RLIAGLLTPEAGTITLDGGEPDTPVAEQAHYLGHRDALKPSLSVGENLGFWRDFLGGER FT TDLSAGIKAVGLGHAAELPAAYLSAGQRRRLSIARLLVVRRPIWLLDEPTSALDVKGQE FT LFVGLMQEHLARGGIIVAATHTPLGIPVREQRIGAAT" FT CDS 229047..229715 FT /codon_start=1 FT /transl_table=11 FT /gene="cycW, ccmB" FT /locus_tag="RPA0204" FT /product="putative heme exporter protein B (heme ABC FT transporter membrane protein), cytochrome c biogenesis" FT /function="InterPro IPR000524:IPR003544 COGs COG2386" FT /db_xref="GOA:Q6NDA5" FT /db_xref="InterPro:IPR003544" FT /db_xref="UniProtKB/TrEMBL:Q6NDA5" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25648.1" FT /translation="MTALGAIIRRDIRIALRVGGGALIGVLFFLTVVVLMPFAVGPDLA FT LLKRLGPAILWLGALLASLLTLDRLFTADAEDGSLDLIVMSRTPLELTCAAKALAHWLA FT AGLPLIVATPVLGLLLNLDGSASLAVMATLLAGTPALTFTGMIGAALAVALRRGGLLLA FT VLVLPLSIPVLIFGVSASQAAIVGPVSFGTPFSILCAISLLSLVIGPFAAAASLRQGLD FT " FT misc_feature order(229083..229151,229194..229247,229338..229406, FT 229434..229502,229521..229589,229617..229685) FT /note="6 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS 229808..230542 FT /codon_start=1 FT /transl_table=11 FT /gene="cycZ, ccmC" FT /locus_tag="RPA0205" FT /product="heme exporter protein C (ABC transporter permease FT component)" FT /function="InterPro IPR002541:IPR003557 COGs COG0755" FT /db_xref="GOA:Q6NDA4" FT /db_xref="InterPro:IPR003557" FT /db_xref="UniProtKB/TrEMBL:Q6NDA4" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25649.1" FT /translation="MKLTELANPTRFLTLAGRLLPWLAAATALALAAGLTQGMLAPDDY FT QQGATVKIMFVHVPNAWLAMFVWGVMSVASLGTLVWRHPLADVAAKTAAPIGAAFTFLA FT LVTGSLWGRPMWGTYWEWDARLTSMLVLFLMYLGLIALWRAVEDPSRAARAAAVLTLVG FT AVNLPIIKFSVDWWNTLHQPASVVRMGGSTLDKAFLIPLLVTAIGFSLLFLTLHLAAMR FT NEILRRRVRSLQMMQASRAEAA" FT sig_peptide 229808..229906 FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.997) with cleavage site probability FT 0.882 atresidue 33" FT misc_feature order(229862..229930,229988..230047,230081..230140, FT 230183..230236,230270..230338,230396..230464) FT /note="6 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS 230732..231328 FT /codon_start=1 FT /transl_table=11 FT /gene="cycY, ccmG" FT /locus_tag="RPA0206" FT /product="putative cytochrome c biogenesis protein, FT thiol:disulfide interchange protein" FT /function="InterPro IPR004799:IPR006662:IPR006663 COGs FT COG0526" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDA3" FT /db_xref="InterPro:IPR012335" FT /db_xref="UniProtKB/TrEMBL:Q6NDA3" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25650.1" FT /translation="MSDTFDPASPKRRSWLVVLPALLFAGLAVLFWFRLGDSDVSRIPS FT ALIGRPAPQTPLPPLDGLSRDGSQVAGLDPAMFKGKVSVVNVWASWCVPCHDEAPLLMT FT LAQDTRIQLVGIDYKDKPDNARRFLGRYGNPFAAVGVDASGRAAIEWGVYGVPETFVIG FT RDGKIAYKLVGPITPDNIEKVLKPEISKALAAPQS" FT misc_feature 230774..230830 FT /note="1 probable transmembrane helix predicted byTMHMM2.0" FT CDS 231468..231866 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0207" FT /product="unknown protein" FT /function="COGs COG1031" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="UniProtKB/TrEMBL:Q6NDA2" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAE25651.1" FT /translation="MGTSTFRRLTLAPLAAAVALGLLASAPAMAQAPQPATPPTAKSDK FT MAPPPKAETPKAETKAAAPAKSEKTELLDINSATAEQLDALPGVGKAYSAAIIKGRPYK FT GKDELVQKKIVPQKTYDGIKDKIIAKQK" FT sig_peptide 231468..231560 FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 1.000) with cleavage site probability FT 0.995 atresidue 31" FT CDS complement(231999..232616) FT /codon_start=1 FT /transl_table=11 FT /gene="ispZ" FT /locus_tag="RPA0208" FT /product="possible intracellular septation protein (ispZ FT family)" FT /function="InterPro IPR006008 COGs COG2917" FT /db_xref="GOA:Q6NDA1" FT /db_xref="InterPro:IPR006008" FT /db_xref="UniProtKB/TrEMBL:Q6NDA1" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25652.1" FT /translation="MTDDLLKPNRPHPLFKLATELGPLLVFFIVNAKFHLFAATGAFMV FT AVVAAVIASYVVTRHVPVMALVTAVVVLVFGTLTLVLHDETFIKMKPTIVYSLFGAVLA FT GGLLFGRSFIAIMFDQVFNLTAAGWRKLTLRWALFFFAMALLNEAVWRTQSTDFWVNFK FT VFGVVPLTMLFALLQMPLTKRYAAEPATLEQSAADEGDVSGR" FT misc_feature complement(order(232077..232142,232164..232220, FT 232266..232331,232371..232436,232449..232514)) FT /note="5 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS complement(232613..233560) FT /codon_start=1 FT /transl_table=11 FT /gene="ftsY" FT /locus_tag="RPA0209" FT /product="putative cell division protein FtsY" FT /function="InterPro IPR000897:IPR001687:IPR003593:IPR004390 FT COGs COG0552" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6NDA0" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q6NDA0" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25653.1" FT /translation="MSDTPENSKQSWWRRLSSGLKRTSSSIGTALSEFVSKRKLDRAML FT EEIEDVLLRADLGTEVAARIAKAVGEGRYDKMISASDVKEIVAAEVEKVLAPVAQPLEV FT DAGNKPFVILMVGVNGSGKTTTIGKLSARFASEGHKVMLAAGDTFRAAAIDQLKVWGDR FT TGTPVVAGAQGSDAAGLAFNALTAAKEQGRDVLLIDTAGRLQNRTELMSELEKVVRVIK FT KVDATAPHAVLLVLDATVGQNALSQVEAFTKTAGVTGLVMTKLDGTARGGILVAIAEKH FT KLPVHFIGVGEGVEDLAPFTARDFAKAIAGTEAA" FT CDS 233589..234563 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0210" FT /product="Pseudouridine synthase:Pseudouridine synthase, FT Rlu" FT /function="InterPro IPR006145:IPR006224 COGs COG0564" FT /db_xref="GOA:Q6ND99" FT /db_xref="InterPro:IPR006224" FT /db_xref="UniProtKB/TrEMBL:Q6ND99" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25654.1" FT /translation="MNESHPDQFEPPELTPDEIQARVLYRDGLMLVIDKPPGLPVHRGP FT KGGPNLEASFDALRYGLPRPPVLAHRLDRDTSGCLVLGRHRKATATLGLLFKHSRISKT FT YWAIVEGGPTEDQGSIDLPIAKLNAERGWWQKVDPEGLPSLTKWRVMGRSGVLPAAATT FT TSATSAPIRDATASGSPPPCGEGSGVGVHSGSLTSGRPHPNPLPQAGEGVRPARGEADK FT DNLSRKPGAILGAPPPTQLTWLALEPITGRTHQLRVHCAAMGWPILGDNIYGNGPRFGE FT PRLHLHAREIVIPLSRNKPPVVVTAPPPTHMHPRLSACGWTAD" FT CDS 234927..236879 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0211" FT /product="acetyl-CoA synthetase" FT /function="InterPro IPR000873:IPR002048 COGs COG0365" FT /EC_number="6.2.1.1" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND98" FT /db_xref="InterPro:IPR018247" FT /db_xref="UniProtKB/TrEMBL:Q6ND98" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25655.1" FT /translation="MSEKIYDVPAEWASRAFVDDAKYRQMYERSVTDPTGFWAEHAKRV FT DWIKAPTKIDNWSFAPGNVSIKWFEDGVLNAAYNCIDRHLDKRGDQVAIIWEGDDPSQS FT RSITYRELHDEVCKFANILRNRNVGKGDRVTIYLPMIPEAAFAMLACARIGAIHSVVFA FT GFSPDSLAGRINDCNSKIVITADEGLRGGRKVPLKANVDAALKKCEGVDWVMVVKRTGA FT AVEMDDVRDFWYHEAAEVVTTECPVEHMHAEDPLFILYTSGSTGQPKGVLHTTGGYLVF FT ASMTHQYVFDYHDGDIYWCTADVGWVTGHSYILYGPLANGATTLMFEGVPNYPTNSRFW FT EVIDKHKVNIFYTAPTAIRALMQAGDEPVKKTSRKSLRLLGSVGEPINPEAWEWYHRVV FT GEDRCPIVDTWWQTETGGILITPLPGATKLKPGSATRPFFGVVPEILDPEGNVLEGECT FT GNLCLARSWPGQMRTVYGDHARFEQTYFSAYKGKYFTGDGCRRDTDGFYWITGRVDDVI FT NVSGHRMGTAEVESSLVAHPKVSEAAVVGYPHDIKGQGIYAYVTLMAGEEPTEELRKEL FT VAWVRKDIGPIASPDLIQFAPGLPKTRSGKIMRRILRKIAEDEPSSLGDTSTLADPAVV FT DDLVEHRQNKHHKAS" FT CDS 237262..237789 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0212" FT /product="ErfK/YbiS/YcfS/YnhG" FT /function="InterPro IPR005490 COGs COG1376" FT /db_xref="InterPro:IPR005490" FT /db_xref="UniProtKB/TrEMBL:Q6ND97" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25656.1" FT /translation="MSFGFRSAKLAMVAVVLAGASVLTAPRAEARPDLVVFRGDYSPGT FT IVVRTGERRLYLVVEPGHAVRYPVGVGKAGKQWAGVTKIDGKFRNPAWAPPAEVKRDVP FT TIPDVIPGGSPANPMGVAAMTLAGGEYAIHGTNRPQSIGGFVSYGCIRMLNDDITDLYE FT RVPVGTQVVVMR" FT sig_peptide 237262..237336 FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.997) with cleavage site probability FT 0.514 atresidue 25" FT terminator 237817..237836 FT /note="TransTerm prediction, 98+%" FT CDS complement(237864..239933) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0213" FT /product="possible OmpA family member" FT /function="InterPro IPR000694:IPR006665 COGs COG2885" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND96" FT /db_xref="InterPro:IPR006665" FT /db_xref="UniProtKB/TrEMBL:Q6ND96" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25657.1" FT /translation="MTKLNVALLATTALTLGSLIGHPAAAESASAPMLLAQAVQGGPAP FT APSEEKAKEAPPPGPRPAPAPPKAAPSAPPPPPAAAPPHVAPPPPPPAPPRAAPPPPPP FT AAAPAPAPKRAEPPPPPPPSHSAPPPPPPHAAPPPPPAPKPSAPPTAAPAERPAAPPPA FT AAPVRPPAPPAGEAPQRRGPPPGAVPPNAVPPNAAAPDAAKPDAAKQPPGERRGPPPGA FT PGTPPNATAPGMTPPPGEAPRRGPPPPPAAANPPPAAAPTPAPSAAPQAAPTSPANPSG FT PAVAPVARPSGERGPQPGAPAGGPPPRPQAGPGAPGAGPAVAPPPGQPQPVPPQPGQPP FT AGPAVAPPAPPPPAVTAPIPPAPPPPQALTPIAPGAQAPGPRNMSDFRGQRREVNENGR FT IVITEPGRIIVRDPSGQEFIRHNEVDRFRYGARDIRTEQIRGGGTRTIVVRPDGTEIIN FT ITGDDGQLMRRIRRDRDGREIIIIDNSYGPRDRANFYVDLPPPVIRIPRDRYIVDYEDA FT SPELIYETLEAPPVERIERRYTMDEIRYSPAVRQRMPSIDLNTINFDLGSWDIPPDQAA FT KLQAIADGLNRAIQRNPREVFLIEGHTDAVGNDTDNLSLSDRRAEAAAALLTQQFGVPA FT ENLTSQGYGEQYLKIQTQAPERQNRRVTIRRITPLLNGGQAALPPPPPGVAPPR" FT sig_peptide complement(239853..239933) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 1.000) with cleavage site probability FT 0.948 atresidue 27" FT CDS complement(240179..240436) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0214" FT /product="hypothetical protein" FT /function="InterPro IPR000694" FT /db_xref="UniProtKB/TrEMBL:Q6ND95" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25658.1" FT /translation="MALGEPQEVPNDPGPVTPPPEVPPSTPGTPTEPPLEQPPGNPNPD FT IPPPIEEPGAPPQPNELPGQMPAEVPMQSPGRSVPNPGVA" FT CDS complement(240436..240924) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0215" FT /product="possible general stress protein 26" FT /function="InterPro IPR000192" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND94" FT /db_xref="InterPro:IPR011576" FT /db_xref="UniProtKB/TrEMBL:Q6ND94" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25659.1" FT /translation="MAATMNEGNAQHAWDLMKKITFAMLATRDGEKIRSRPMAAYVRPE FT EGAIYFLTDVRRHKDEEIAQDHHVNLGFANASAQKYVSVTGYAAISNDRAKIKELFGTE FT AKAWWDSADDPNIRVLKVTPEEAEYWDSPGSLISYAKMMVAAATGNRPDLGENAKVAI" FT terminator complement(241115..241136) FT /note="TransTerm prediction, 98+%" FT CDS complement(241162..241944) FT /codon_start=1 FT /transl_table=11 FT /gene="sdhB" FT /locus_tag="RPA0216" FT /product="succinate dehydrogenase iron-sulfur protein FT subunit" FT /function="InterPro IPR001450:IPR004489:IPR006058 COGs FT COG0479" FT /EC_number="1.3.99.1" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND93" FT /db_xref="HSSP:1KF6" FT /db_xref="InterPro:IPR017900" FT /db_xref="UniProtKB/TrEMBL:Q6ND93" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25660.1" FT /translation="MVEFALPKNSKIVGGKTWPKPEGATEVREFRVYRWNPDDGKNPSV FT DTYYVDKHDCGPMVLDGLIWIKNNIDPTLTFRRSCREGVCGSCAMNIDGENTLACTKAM FT DDVRDDAVKINPLPHQPVVKDLVPDLTNFYAQYASIQPWLQTVTPTPQKEWRQSHSDRE FT KLDGLYECILCACCSTSCPSYWWNSDRFLGPAALLQATRWVEDSRDEATGERLDNLEDP FT FRIYRCHTIMNCAKACPKGLNPSEAIANLKLKLVERQI" FT CDS complement(242052..243875) FT /codon_start=1 FT /transl_table=11 FT /gene="sdhA" FT /locus_tag="RPA0217" FT /product="succinate dehydrogenase flavoprotein subunit" FT /function="InterPro IPR003952:IPR003953:IPR004112 COGs FT COG1053" FT /EC_number="1.3.99.1" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND92" FT /db_xref="HSSP:1KF6" FT /db_xref="InterPro:IPR011281" FT /db_xref="UniProtKB/TrEMBL:Q6ND92" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25661.1" FT /translation="MAANVNGAPAAGGNAYPIEDHTYDVVVVGAGGAGLRAVVGCSEAG FT LRTACITKVFPTRSHTVAAQGGISASLGNMHKDDWRWHMYDTVKGSDWLGDQDSIEYMV FT RNAPEAVYELEHWGVPFSRTEDGKIYQRPFGGMTMDFGKGQAQRTCAAADRTGHAMLHT FT MYGQALRHSAEFYIEFFAIDLIMDDQGCCRGVVALKLDDGTIHRFKAQTTILATGGYGR FT AYASCTSAHTCTGDGGAMALRAGLPLQDMEFVQFHPTGIYGSGCLVTEGARGEGGYLVN FT SEGERFMERYAPSAKDLASRDVVSRAMTIEMREGRGVGKKKDHIFLHLDHLAPEVLHER FT LPGISESARIFAGVDVTREPIPILPTVHYNMGGIPTNFHGEVVTKKDGDDNAVVPGLMA FT IGEAACVSVHGANRLGSNSLIDLVVFGRAAALRCAEKLVPNGKQPELPASSADMSLSRL FT DKYRYAKGGTPTAKLRERMQHVMQNNCAVFRTGEVLAEGKELIANVHGSVGDVGVSDRT FT LVWNSDLVETLEFDNLIVQAVVTMNSAANRTESRGAHAREDFPDRDDANWMKHTLAWIG FT DKGDVTIDYRPVHDYTMTNDVQYIPPKPRVY" FT CDS complement(243879..244292) FT /codon_start=1 FT /transl_table=11 FT /gene="sdhD" FT /locus_tag="RPA0218" FT /product="succinate dehydrogenase cytochrome b small FT subunit" FT /function="InterPro IPR000701 COGs COG2142" FT /EC_number="1.3.99.1" FT /db_xref="GOA:Q6ND91" FT /db_xref="InterPro:IPR014312" FT /db_xref="UniProtKB/TrEMBL:Q6ND91" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25662.1" FT /translation="MSSDAHGKRTPTSMRTPIGKVRKFGPAGSGTSDFWQQRITGVAMA FT LLILPTIVVIMMLLGRNQAAAAQILGSPLISLIMILFIIASAIHMKIGMQVVIEDYVQN FT EKLKLVTIMANNFFSIAVALAAIFAIFKMASGV" FT misc_feature complement(order(243900..243965,244029..244094, FT 244110..244175)) FT /note="3 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS complement(244289..244687) FT /codon_start=1 FT /transl_table=11 FT /gene="sdhC" FT /locus_tag="RPA0219" FT /product="succinate dehydrogenase membrane FT anchor/cytochrome b subunit" FT /function="InterPro IPR000701 COGs COG2009" FT /EC_number="1.3.99.1" FT /db_xref="GOA:Q6ND90" FT /db_xref="InterPro:IPR018495" FT /db_xref="UniProtKB/TrEMBL:Q6ND90" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25663.1" FT /translation="MTARIERPLSPHMQAYRWSLTMTMSIVHRATGIALYSGTLLLAWW FT LIACAAGPTAYANVQAFTGSWIGRLIVFGYTWSLMHHMLSGVRHFVWDLGYGFKTADRE FT WLTWAALIGGIVLTVLLWVIAYSMGVAR" FT misc_feature complement(order(244307..244372,244412..244477, FT 244523..244588)) FT /note="3 probable transmembrane helices predicted FT byTMHMM2.0" FT sig_peptide complement(244514..244687) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.636) with cleavage site probability FT 0.473 atresidue 58" FT CDS 245070..246014 FT /codon_start=1 FT /transl_table=11 FT /gene="czcD" FT /locus_tag="RPA0220" FT /product="putative cation efflux system protein" FT /function="InterPro IPR002524 COGs COG1230" FT /db_xref="GOA:Q6ND89" FT /db_xref="InterPro:IPR002524" FT /db_xref="UniProtKB/TrEMBL:Q6ND89" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25664.1" FT /translation="MSHDHHHHHGPGAAHGAGGHSHAPQDFGRAFAIGIALNMVFVVAE FT AAFGYFSNSMALIADAGHNLSDVAGLVVAWIAAGLSKRPPSARYTYGLRGSSILAALFN FT AVFLLLAVGAIGWEAVVRLFAPEPVAGITVMVVAGIGIVINAVTAWLFASGRHSDLNIR FT GAYLHMAADAAVSAAVVVAGVIILSTGWYWIDPAVSLIVAVVIVWGTWGLLRDSTALSL FT AAVPRDIDPTAVRAFLSKLPGVTQVHDLHIWGMSTTEVALTCHLVMPGGSPGDPFLVDL FT AHELQHDFGIAHTTVQIETDPNTVCALAPEHVV" FT misc_feature order(245157..245225,245361..245429,245457..245525, FT 245562..245630,245643..245711) FT /note="5 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS complement(246248..247759) FT /codon_start=1 FT /transl_table=11 FT /gene="matB" FT /locus_tag="RPA0221" FT /product="malonyl CoA synthetase" FT /function="InterPro IPR000873 COGs COG0318" FT /EC_number="6.2.1.-" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND88" FT /db_xref="InterPro:IPR000873" FT /db_xref="UniProtKB/TrEMBL:Q6ND88" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25665.1" FT /translation="MNANLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVL FT VARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIV FT VCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYT FT SGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFAR FT GSMIFLPKFDPDKILDLMARATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLL FT ADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGK FT ELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGK FT DLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQV FT LHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDIYK" FT CDS 248034..248609 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0222" FT /product="Beta-Ig-H3/Fasciclin domain" FT /function="InterPro IPR000782 COGs COG2335" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="InterPro:IPR000782" FT /db_xref="UniProtKB/TrEMBL:Q6ND87" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25666.1" FT /translation="MTKRIALLTAAAFSALALAATVSVPASAESGKMMKSSGDTVMVGG FT APMYPSKTIVENAAKSKDHTTLVAAVKAAGLVKTLDGKGPFTVFAPTNMAFDKLPAGTV FT ETLIKPENKAQLTKILTYHVVPGKLEAADLTDGKKLKTVEGETLTVKRMGDQVTLIDAK FT GGSSTVTIPNVNQSNGVIHVIDTVLMPS" FT sig_peptide 248034..248120 FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 1.000) with cleavage site probability FT 0.704 atresidue 29" FT misc_feature 248046..248114 FT /note="1 probable transmembrane helix predicted byTMHMM2.0" FT terminator 248682..248707 FT /note="TransTerm prediction, 98+%" FT CDS 248831..249469 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0223" FT /product="conserved hypothetical protein" FT /function="InterPro IPR000516" FT /db_xref="GOA:Q6ND86" FT /db_xref="InterPro:IPR000516" FT /db_xref="UniProtKB/TrEMBL:Q6ND86" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25667.1" FT /translation="MSTTTLTDPAPTTVPAESGAVLQPLWVRVMHWINAAAMLAMILSG FT WQIYNAAPLFDFQFSRALTLGGWLGGGLLWHFAAMWVLVINGLLYVILGFATGRFRNKL FT WPITLSGVASDLSQAIRLRLSHDDLSRYNAVQKVLYVGVLLVGLVSVASGLAIWKPVQF FT HSLTALLGGYDTARYVHFFAMSAIVGFSAIHIVLAALVPKALRAMIIGR" FT misc_feature order(248924..248992,249050..249118,249245..249304, FT 249362..249430) FT /note="4 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS 249585..250364 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0224" FT /product="similar to eukaryotic molybdopterin FT oxidoreductase:Tat pathway signal" FT /function="InterPro IPR000572:IPR006311 COGs COG2041" FT /db_xref="GOA:Q6ND85" FT /db_xref="InterPro:IPR017909" FT /db_xref="UniProtKB/TrEMBL:Q6ND85" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25668.1" FT /translation="MLRINRLLIPGVDKKLLVHDAAKLMPDVSRRRFLAGGASLGALTL FT LTGCDVVDGASAETLLAKVSKFNDAVQAAIFNPNTLAPTFSEKDITRPFPFNAYYSLDE FT APTIDGGDWKLEVSGLVQNKKSWTLQELTQLPEVSQITRHVCVEGWSAIGQWSGVRLRD FT FLDLIGADTKANYVWFRCADDYTSPIDMPTALHPQTQMTFKFGGDVLPRAYGYPMKIRI FT PTKLGFKNPKYVVSMEVTNDYKGGYWEDQGYNSFSGL" FT CDS 250637..251155 FT /codon_start=1 FT /transl_table=11 FT /gene="sodC" FT /locus_tag="RPA0225" FT /product="putative superoxide dismutase (Cu/Zn)" FT /function="InterPro IPR001424 COGs COG2032" FT /EC_number="1.15.1.1" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND84" FT /db_xref="HSSP:1BA9" FT /db_xref="InterPro:IPR018152" FT /db_xref="UniProtKB/TrEMBL:Q6ND84" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25669.1" FT /translation="MILRALLCTGALLGVTTAAMAADSAKATLKNAEGTEIGTATLTES FT SKGVTIKLALKGLPPGEHAFHIHAVGKCEPPFTSAGGHFNPENKKHGKMAEGGAHAGDM FT PNLDVPASGALSIDVVNDAVTLAKGKPNSVFKDGGTALVIHAKADDYKSDPAGNAGDRI FT ACGVIEEAK" FT sig_peptide 250637..250702 FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 1.000) with cleavage site probability FT 0.998 atresidue 22" FT CDS complement(251299..252486) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0226" FT /product="Major Facilitator Family (MFS) transporter" FT /function="InterPro IPR007114 COGs COG0477" FT /db_xref="InterPro:IPR010645" FT /db_xref="UniProtKB/TrEMBL:Q6ND83" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25670.1" FT /translation="MTLLDRTEAAPAHPARLILILSLAPTVGLGIGRFAYSLLLPDMRD FT SLGWSYSAAGFMNTINAAGYLVGALVTSRLVARFGMAAIVRVGTLACVASLALCALSGN FT FAVLSAARLIAGIGAALAFVAGGALATTIAQAQPARSAFLLSLFYAGPGIGILSSGLIA FT PFLLQAAGPGSWWLGWLVLAALSAAMTLPVLLAPIGGDAGIGGGRAAPFRIAPVVVYLA FT GYFMFGAGYIAYMTFMIAYVRDAGGGAAAQSAFWCLIGISAFATPWVWRRVMALHRGGL FT STTIILAVNAVGAVLPLFSLSPVMLATSALVFGVSFFAVVASTTAFVRFNYPQAGWPGA FT IAAMTIAFGIGQTLGPLVVGAITDAIGSLSSALAVSAATLALGAALSAFQRPLPK" FT misc_feature complement(order(251323..251388,251404..251469, FT 251491..251556,251587..251652,251674..251739, FT 251770..251835,251896..251961,251992..252057, FT 252097..252162,252193..252258,252274..252339, FT 252370..252435)) FT /note="12 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS 252707..253819 FT /codon_start=1 FT /transl_table=11 FT /gene="leuB" FT /locus_tag="RPA0227" FT /product="beta-isopropylmalate dehydrogenase" FT /function="InterPro IPR001804:IPR004429 COGs COG0473" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND82" FT /db_xref="HSSP:1A05" FT /db_xref="InterPro:IPR004429" FT /db_xref="UniProtKB/Swiss-Prot:Q6ND82" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25671.1" FT /translation="MATHKLLLLPGDGIGTEVMAEVSRLIDWLNKAGIASFETEHGLVG FT GAAYDADKVAITDATMALAQASDAVIFGAVGGPKWDGVPYDARPEAGLLRLRKDLGLFA FT NLRPAVCYPALADSSSLKRDVVEGLDIMIVRELTGGVYFGEPKTITDLGNGQKRAVDTQ FT VYDTYEIERIGRVAFDLARKRRNKVTSMEKRNVMKTGVLWNEVITAVHDREYKDVQLDH FT QLADSGGMNLVKWPKQFDVIVTDNLFGDMLSDIAAMLTGSLGMLPSASLGEVDAKTGKR FT KSMYEPVHGSAPDIAGKGMANPVAMLASFGMALRYSLDMGALADKLDEAIAAVLAKGLR FT TADIKSEGTTVISTSQMGEAIVTELQALHA" FT terminator 253909..253941 FT /note="TransTerm prediction, 98+%" FT CDS complement(253976..254377) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0228" FT /product="unknown protein" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="UniProtKB/TrEMBL:Q6ND81" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAE25672.1" FT /translation="MRLPMGTPMFVKSTAARLLPVLLAAAAVAVIGVSNADAAPKKKRV FT YGNSDQIRYGSRGPNVVYQAGPRTRVYVTKRSWLDAGTEVQPGERHFSDYAFPPGYSFA FT RENGQRPLDRWPLNPASDLGGSPTGFPLY" FT sig_peptide complement(254267..254377) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 1.000) with cleavage site probability FT 0.733 atresidue 37" FT misc_feature complement(254276..254332) FT /note="1 probable transmembrane helix predicted byTMHMM2.0" FT CDS complement(254521..255330) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0229" FT /product="hypothetical protein" FT /function="InterPro IPR000104 COGs COG0465" FT /db_xref="UniProtKB/TrEMBL:Q6ND80" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25673.1" FT /translation="MRSSPALRAAASRHRIYPALQSFAEECRDTLLRTMAYVGALALIG FT LIVFYTANPLTDAAITAATTAEAGPGWSVATRSQPAYALSQLDWPGKAETTEILRHPDG FT GRRDILRLAAPGEPVAAEIEIYRIGRETSRVAAEAALAARMDSAGTATIETAGVIDTKF FT GPVPLFSLTGSDRPAGSCLGFVKAIDAASLRISGFSCRGDSVPQRRTAVACLLDRLVLL FT SGDAATAAAFAQAELRRGSCAPNQSAASAASADWLTGPQDPLLRGRL" FT misc_feature complement(255175..255240) FT /note="1 probable transmembrane helix predicted byTMHMM2.0" FT CDS 255445..256479 FT /codon_start=1 FT /transl_table=11 FT /gene="asdB" FT /locus_tag="RPA0230" FT /product="aspartate-semialdehyde dehydrogenase" FT /function="InterPro IPR000534:IPR005986 COGs COG0136" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND79" FT /db_xref="InterPro:IPR012280" FT /db_xref="UniProtKB/TrEMBL:Q6ND79" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25674.1" FT /translation="MGYKVAVVGATGNVGREMLAILDERKFPADEVVALASRRSVGVEV FT SYGDKTLKCKALEHYDFSDVDICLMSAGGEVSKEWSPKIGAQGAVVIDNSSAWRMDPDV FT PLIVPEVNAAAAAGFTKKNIIANPNCSTAQLVVALKPLHDHAKIKRVVVSTYQSVSGAG FT KDAMDELFSQTKAVYTNSELVNKKFPKRIAFNLIPQIDVFMEDGFTKEEWKMVVETKKI FT LDPKIKLTATCVRVPVFVSHSESVNIEFENPISADEAREILRKAPGCLVIDKHEPGGYV FT TPYEAAGEDATYISRIRTDPTVDNGLVLWCVSDNLRKGAALNAIQIAEVLINRKLITAK FT KQAA" FT CDS 256615..257169 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0231" FT /product="Uncharacterized protein family UPF0114" FT /function="InterPro IPR005134 COGs COG2862" FT /db_xref="GOA:Q6ND78" FT /db_xref="InterPro:IPR005134" FT /db_xref="UniProtKB/TrEMBL:Q6ND78" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25675.1" FT /translation="MTDQPDPTPSPSSAKRVERGFETLLFNSRWLMAPFYFGLVISLVV FT LLYKFVMLLYEFIVHATLAKESDIILGVLSLIDVSLTGNLVLIVVFSGYENFVSRIDPG FT NHPDWPEWMTKVDFAGLKQKLLASIVAISAIQVLKAFMNIDSYDQTKLAWLVGIHLVFV FT VSTLIMALSDRWGHSDDKGGH" FT misc_feature order(256723..256791,256819..256887,257068..257127) FT /note="3 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS complement(257321..257965) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0232" FT /product="putative carbonic anhydrase" FT /function="InterPro IPR001765 COGs COG0288" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND77" FT /db_xref="InterPro:IPR001765" FT /db_xref="UniProtKB/TrEMBL:Q6ND77" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25676.1" FT /translation="MTSFPKSLIDGYEAFRTQRLPTEQSRFRELSERGQSPEVMVIGCC FT DSRVSPEVIFDAGPGEIFVVRNVANLVPVYEPDGGAHGVSAALEFAVQVLRVKHIVVLG FT HALCGGIKAFTDKTPPLTESDFIGRWMQMFTKPGEVVEKRDHETVQDFRTRIEKAAVFR FT SIENLMTFPCIKILVERGKLQLHGAYFGVADGDLFVLDQENKQFVPAAEVV" FT CDS 258147..259025 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0233" FT /product="putative Citrate lyase beta chain (acyl lyase FT subunit) (citE)" FT /function="COGs COG2301" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND76" FT /db_xref="InterPro:IPR011206" FT /db_xref="UniProtKB/TrEMBL:Q6ND76" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25677.1" FT /translation="MIRPRRSLLFMPGSNARALEKARLLPVDGLILDLEDAVAPDAKDT FT ARDQIAAAVAAKGYGKREVLVRINALDTAWWQDDIAMAAKAGPDGILVPKVSSIEDIAT FT VGNKLAELGADPSIRVWIMIETARGVLHAEELAAQKHEAKSRLEGFVFGPNDISRETGI FT RMLPGRSTMLSMITHCVLAARVHGLIALDGPYSDIGNVDGLSEECAQARDLGFDGKTLI FT HPGQIDACNAAFTPPPEDVAQARKILAAFERPENQGRGAIQLDGRMVERLHAEIAKKTI FT AIADAIETAGH" FT sig_peptide 258147..258203 FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.688) with cleavage site probability FT 0.664 atresidue 19" FT CDS complement(259203..260894) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0234" FT /product="methyl-accepting chemotaxis receptor/sensory FT transducer" FT /function="InterPro IPR000727:IPR003660:IPR004089 COGs FT COG0840" FT /db_xref="GOA:Q6ND75" FT /db_xref="InterPro:IPR003660" FT /db_xref="UniProtKB/TrEMBL:Q6ND75" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25678.1" FT /translation="MKIRLSITSMIVAFAVVVLVSLTAMLTTNFMALNQLRVGGPLYSQ FT IKLGNDLVADILPPPAYVIEAYLEATLALRRPTEWRAHAAKLEQLHRDYLDRQKYWSGS FT ELDPVLKTRLTVDSDAAVQKFWRAAEQELIPALSAGDEAAAEAAYTKLDASYAAHRAII FT DDIVKRANAENAELETEAARQVGSYSTIVWILSGFAALLIALGVAGLAVGMVRPLVRLT FT AAMQAMAAGMLDVVIPGAGRSDEIGGMAKAITAIKTNAEHKANQEAAEKSRQEHLVAEQ FT RKADMARLADGFEDAVGEIIKTVSSAANELEAAAHSLSSTAARSLELAVGVASSSQEAS FT AGVQSVASASEELTASVHEIGRQVQTSANVANEAADQARQTNERVSELSAAAARIGDVV FT ELISNIAGQTNLLALNATIEAARAGEAGRGFAVVASEVKALAEQTGKATGEIGQQITGI FT QAATGESVAAIKEICSIIGQMSEISSSIASAVEEQGMATKDIAVNIQHAAHGTSQVDQD FT IARVQAGARETGAASVQVLSAAKSLSSESSRLRAEVGNFLASVRAA" FT misc_feature complement(order(260256..260321,260814..260879)) FT /note="2 probable transmembrane helices predicted FT byTMHMM2.0" FT sig_peptide complement(260796..260894) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 1.000) with cleavage site probability FT 0.760 atresidue 33" FT CDS complement(261643..262248) FT /codon_start=1 FT /transl_table=11 FT /gene="leuD" FT /locus_tag="RPA0235" FT /product="3-isopropylmalate dehydratase small subunit" FT /function="InterPro IPR000573:IPR004431 COGs COG0066" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND74" FT /db_xref="InterPro:IPR015936" FT /db_xref="UniProtKB/Swiss-Prot:Q6ND74" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25679.1" FT /translation="MDKFTTLEGVAAPLKIINVDTDMIIPKQYLKTIKRTGLGKGLFSE FT QRYKDDGSENPDFILNKPAYRGAKILVAGDNFGCGSSREHAPWALLDFGIRCVISTSFG FT DIFYNNCFKNGVLPIRVSQADLDKLFDDAERGSNATMTIDLQAQEIRGPDGGAIKFEID FT PFRKHCLINGLDDIGLTLEKKPSIDAYETKLKTERAWA" FT CDS complement(262334..262747) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0236" FT /product="conserved unknown protein" FT /function="InterPro IPR006025" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="InterPro:IPR006025" FT /db_xref="UniProtKB/TrEMBL:Q6ND73" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAE25680.1" FT /translation="MWINAKAPSLADLEQMAHEMFARLPGEFRSLCEDVIIRVDDFATE FT EVLDELGAETEFDVLGLFQGIGLPQRSSQDVAPMPNMIWLYRRPILDYWAEHDDSLGEI FT VRHVLVHEIGHHFGLSDDDMEAIEAKADELAED" FT CDS 263432..263716 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0237" FT /product="conserved hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q6ND72" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25681.1" FT /translation="MKILKLSGLAAIAGLLLIAAPGERAQAAPLSTPGIAASVQRDAIP FT QTTEVQYRHHRHMHRHHHRSHRHHHVRRHYGHRHHHHHHYRHHHHRHWR" FT sig_peptide 263432..263515 FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 1.000) with cleavage site probability FT 0.675 atresidue 28" FT terminator 263734..263755 FT /note="TransTerm prediction, 98+%" FT CDS 263816..264139 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0238" FT /product="hypothetical protein" FT /function="InterPro IPR000104" FT /db_xref="InterPro:IPR017909" FT /db_xref="UniProtKB/TrEMBL:Q6ND71" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25682.1" FT /translation="MEVTMRTWIGAAILATALGAAGPAGATPATAAKATGVSAAEATDI FT SARQRKPHAKHRHVRRHSAPHRTYVYGPRGSYDYNARPHWYRPDPVSPFFPFSYGWGLG FT PSW" FT sig_peptide 263816..263896 FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 1.000) with cleavage site probability FT 0.479 atresidue 27" FT misc_feature 263834..263902 FT /note="1 probable transmembrane helix predicted byTMHMM2.0" FT CDS 264260..264946 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0239" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q6ND70" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25683.1" FT /translation="MADLRVIRMPAAQSSRPSPGPLRLVRRIGVALMAATALTISAITP FT RPALALSPVTPATKSISSAAATQPIQVQHHFGHGGGPRVGGFHGGGFRGGGFRGGPAFH FT GGFRGGPAVGPRFYGGGRHFYAGPRVYGAPRFYGRPRYFGARHYGFHRRYYRPRVYGYY FT GPAYYGSAYYYPAYYGYYRPRVCRVVWTYYGPRRVCHVRHWRHHWHRHWRHHHRHHHHH FT RHWRVY" FT sig_peptide 264260..264412 FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.844) with cleavage site probability FT 0.837 atresidue 51" FT misc_feature 264734..264802 FT /note="1 probable transmembrane helix predicted byTMHMM2.0" FT terminator complement(264962..264993) FT /note="TransTerm prediction, 98+%" FT terminator 264967..264988 FT /note="TransTerm prediction, 98+%" FT CDS complement(265013..266422) FT /codon_start=1 FT /transl_table=11 FT /gene="leuC" FT /locus_tag="RPA0240" FT /product="3-isopropylmalate dehydratase" FT /function="InterPro IPR001030:IPR001687:IPR004430 COGs FT COG0065" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND69" FT /db_xref="InterPro:IPR015936" FT /db_xref="UniProtKB/Swiss-Prot:Q6ND69" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25684.1" FT /translation="MSAKPTTLYDKIWNDHLVHEAEDGTCLLYIDRHLVHEVTSPQAFE FT GLRTAGRKVHAPEKTLAVVDHNVPTTDRSKPNPDPESAEQIAALAENARDFGITYYNEF FT DKRQGVVHVIGPEQGFTLPGTTIVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQ FT KKAKNMRVTVDGQLPDGVTAKDVILAIIGEIGTAGGTGYVLEYAGDAIRSLSMEGRMTV FT CNMSIEGGARAGLIAPDERAYEFLKGRPLAPKGAAWDAALRYWDTLRSDDGAHFDHELK FT LDAAALPPIVTWGTSPEDVISVTGRVPNPADIADEAKRLSKERALAYMGLTPGTKITDI FT KIDRMFIGSCTNGRIEDLRAAAKVAEGKTVNANVNAIIVPGSGLVKEQAEAEGLDKIFI FT KAGFEWREPGCSMCLAMNPDKLAPEERCASTSNRNFEGRQGFKGRTHLVSPAMAAAAAI FT AGHFVDIRDWH" FT terminator complement(266683..266702) FT /note="TransTerm prediction, 98+%" FT CDS complement(266732..267121) FT /codon_start=1 FT /transl_table=11 FT /gene="rplS, L19" FT /locus_tag="RPA0241" FT /product="50s ribosomal protein L19" FT /function="InterPro IPR001857 COGs COG0335" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND68" FT /db_xref="InterPro:IPR018257" FT /db_xref="UniProtKB/Swiss-Prot:Q6ND68" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25685.1" FT /translation="MNLIQTLEKEQFDKLSAGKTIPEFGPGDTVIVNVKVVEGERSRVQ FT AYEGVCIGRSGGGINESFTVRKISYGEGVERVFPLLSPMIDSIKVVRRGKVRRAKLYYL FT RNLRGKSARIVEKKQDRTAAVAAAE" FT CDS complement(267235..267981) FT /codon_start=1 FT /transl_table=11 FT /gene="trmD" FT /locus_tag="RPA0242" FT /product="putative tRNA (guanine-N1)-methyltransferase" FT /function="InterPro IPR002649 COGs COG0336" FT /EC_number="2.1.1.31" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND67" FT /db_xref="HSSP:1OY5" FT /db_xref="InterPro:IPR002649" FT /db_xref="UniProtKB/Swiss-Prot:Q6ND67" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25686.1" FT /translation="MTWRATVLTLFPEMFPGPLGVSLAGRALASGLWGLEARDIRDSAT FT DRHRSVDDTPAGGGPGMVLRADVLAAAIDAVDAAADRPRLVMSPRGRPLTQARVAELAA FT GPGPLIVCGRFEGIDQRVIDARGLEEVSIGDYVLSGGEIAAMALIDACVRLLPGVMGKL FT ESSTDESFSAGLLEYPQYTRPQTFEGRPIPEVLLSGDHGKVAAWRLGEAEALTRARRPD FT LWAARPAQTIRAKGESQKTPKNKTDG" FT sig_peptide complement(267892..267981) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.616) with cleavage site probability FT 0.593 atresidue 30" FT CDS complement(268124..268654) FT /codon_start=1 FT /transl_table=11 FT /gene="rimM" FT /locus_tag="RPA0243" FT /product="putative 16S rRNA processing protein." FT /function="InterPro IPR002676 COGs COG0806" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND66" FT /db_xref="InterPro:IPR002676" FT /db_xref="UniProtKB/Swiss-Prot:Q6ND66" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25687.1" FT /translation="MPSGLICVARIGAPHGVRGAVRLWSFTADPFAVSDYGPLVTKDGA FT RQFEIASAREAKSHLVVTLKGVTTRDEAERLNGVELYVARDKLPPTEADEYYHADLIGL FT AAVTTTGDPLGKVVAIHNFGAGDIIEIAPPSGPTLLLPFTNAVVPTVDLAVGQVVIEPP FT NEIEGDTPNHPEA" FT CDS complement(268667..268987) FT /codon_start=1 FT /transl_table=11 FT /gene="rpsP, S16" FT /locus_tag="RPA0244" FT /product="ribosomal protein S16" FT /function="InterPro IPR000307 COGs COG0228" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:P62236" FT /db_xref="InterPro:IPR000307" FT /db_xref="UniProtKB/Swiss-Prot:P62236" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25688.1" FT /translation="MSVVIRLARAGTKKRPFYHVVVADSRFPRDGRFIERLGYFNPLMA FT KDNEARLKLDLDKVKDWLAKGAQPSDRVARFLDTAGVRKREARNNPEKAVPRKERKAAD FT GK" FT CDS complement(269157..270707) FT /codon_start=1 FT /transl_table=11 FT /gene="ffh/ftsY" FT /locus_tag="RPA0245" FT /product="signal recognition particle protein" FT /function="InterPro FT IPR000897:IPR001687:IPR003593:IPR004125:IPR004780 COGs FT COG0541" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND64" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q6ND64" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25689.1" FT /translation="MFDNLSEKLGGILDRLTGRGALSEADVDAAMREIRRALLEADVAL FT EVVRSFTERVREQAVGATVVKSVKPGQMVVKIVNDELIATLGSEVQSIDLNAVPPVPIM FT MVGLQGSGKTTTTAKLARRMTERDKRKVLMASLDVYRPAAMEQLAVLGRDLQIDTLPIV FT AGQQPPDIARRAMEAGKLGGYDVVLLDTAGRTTLDEDMMTEAAEIKAAANPHEVLLVAD FT SLTGQDAVNLARAFDQRVGLTGIVLTRIDGDGRGGAALSMRAVTGKPIKLMGTGEKTDA FT LEDFHPSRIASRILGMGDIVSLVEKAAATLDAEKAAAVAEKMRKGKFDLTDLRDQLLQM FT TKMGGIGGLMGLMPGISKMKNQIAASGIDDKVLKRQVAIIDSMTREERKNPDILKASRK FT KRIAAGAGIKVEDVNKLLKMHRNMADMMKAVGRGKGGPMAGFAKAMGFGGGLPSPDEIK FT AMQEKMKSGDMPEGLPELPKDLPASLRGGMPNLPGLTGLAGKPTLPGLGGFPGFGKKK" FT CDS 271220..271591 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0246" FT /product="PilT protein, N-terminal" FT /function="InterPro IPR002716" FT /db_xref="UniProtKB/TrEMBL:Q6ND63" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25690.1" FT /translation="MAFVLDASTAVAWCFDEHHPAADRTLELAKVSEPRAPAILWFELR FT NAALMGIRRGRVKAEAADGVLARIERIRISIAPLPPAADPIFALAQRHRLTFYDAAYLE FT LAQRERIGLATLDAALVGA" FT CDS 271596..272657 FT /codon_start=1 FT /transl_table=11 FT /gene="romA" FT /locus_tag="RPA0247" FT /product="putative outer membrane protein" FT /function="InterPro IPR001279:IPR006311 COGs COG2220" FT /db_xref="GOA:Q6ND62" FT /db_xref="InterPro:IPR006311" FT /db_xref="UniProtKB/TrEMBL:Q6ND62" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25691.1" FT /translation="MSLITRRRLLATAAGLAATAGLSSLWISRMSYYQGPVTDHFDGTR FT FFDPDGAPPKNFWEVMRWRFSHKPAQWPEWAPSPFADTPPPRVDGAGVRLVYVGHASWL FT IQTAGLNVLIDPVWSERVSPVSFAGPKRHNDPGIAFDKLPDIDVVLVSHGHYDHLDLAT FT LSRLAAAHKPRVITPLGNDLTMTAHDDAIRAEAYDWSDRVALNDRVAVTLVPTRHWTAR FT GLFDRNRALWASFVLETPAGRIYVVCDSGYGDGRHFRRVRDAHAPLKLAILPIGAYEPR FT WFMQDQHMNPADAVKALADCGAERALANHHGTFQLTDEAIDAPEQALYAALDAEGVPRE FT RFPVLKPGQVFEL" FT sig_peptide 271596..271658 FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.999) with cleavage site probability FT 0.543 atresidue 21" FT CDS complement(272667..273365) FT /codon_start=1 FT /transl_table=11 FT /gene="bp26" FT /locus_tag="RPA0248" FT /product="DUF541" FT /function="COGs COG2968" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="InterPro:IPR007497" FT /db_xref="UniProtKB/TrEMBL:Q6ND61" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25692.1" FT /translation="MNMLRSLSIAAAACCLFVALPARAQDVPPPGIVVRGEAQKSVAPD FT TAVIEAGVSNFAKSARAAAEATNLAIGKVLLELKNAGIDGKDIQTSQLSLQPQYADRPG FT PSEVTGYVAKNIVSVRVRDITALAGILDRLMVAGANEVRGISFTVSNASKLLDEARTEA FT VADARRKAEIYARAAGLTLGAPVSIAEDSGPGVMPMRKMAADLSAGAQVAPGEQSLNVS FT VTVNWGVKAQ" FT sig_peptide complement(273291..273365) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 1.000) with cleavage site probability FT 1.000 atresidue 25" FT CDS complement(273362..274144) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0249" FT /product="hypothetical protein" FT /function="InterPro IPR000104:IPR000694" FT /db_xref="InterPro:IPR010499" FT /db_xref="UniProtKB/TrEMBL:Q6ND60" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25693.1" FT /translation="MERPCLFGLMRVGLMPALVLTLGIAGASAQTAPDASKDAKDKPPV FT AAPAQAQTPAAPATSATPAAPAPATPPAASEAPAATPVPTTPPAPSATQTPAAPSAPAP FT VQTADPFGEESTLEPKTVVILKGKANWDNAFDSLMDAFKSLTALLDKQGIAPNGNPMIV FT YTSTDDAGFTFQAQIPVPQEPKNLGKSMSIGKSPDGKALKFVHRGSYDNMDNTYEAITN FT FLDDKKLEAKDTFIEEYMTDPLKTAEDKLVINVYVPMK" FT sig_peptide complement(274055..274144) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.994) with cleavage site probability FT 0.917 atresidue 30" FT misc_feature complement(274058..274123) FT /note="1 probable transmembrane helix predicted byTMHMM2.0" FT CDS 274381..275262 FT /codon_start=1 FT /transl_table=11 FT /gene="dapF" FT /locus_tag="RPA0250" FT /product="diaminopimelate epimerase" FT /function="InterPro IPR001653 COGs COG0253" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND59" FT /db_xref="InterPro:IPR018510" FT /db_xref="UniProtKB/Swiss-Prot:Q6ND59" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25694.1" FT /translation="MSALDNRLFAKMNGIGNEIVVVDLRDQPAPVTPADARAVAAHVPY FT DQLMLLQPARLSGTEAFVRIYNNDGSESGACGNGMRCVARQMFSGSEKNGLTFETRAGL FT LNCWRGPADGLYTVDMGEPKFGWQDIPLAEEFRDTRMIELQIGPIDAPVLHTPSVVSMG FT NPHAIFWVDDVNAYDLGRFGPLLENHPIFPERANITLAHIVDRQHITMRTWERGAGLTK FT ACGSAACSTAVAAARLKRTDRTVEMTLPGGQLTIEWRESDNHVLMTGGAAFEFEGRFDP FT ALFSGALDPTGA" FT CDS 275262..276533 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0251" FT /product="MiaB-like tRNA modifying enzyme" FT /function="InterPro IPR005839:IPR006467:IPR006638 COGs FT COG0621" FT /db_xref="GOA:Q6ND58" FT /db_xref="InterPro:IPR006467" FT /db_xref="UniProtKB/TrEMBL:Q6ND58" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25695.1" FT /translation="MAVEVVTFGCRLNAFESELIRREAEGAGLADTIVVNSCAVTNEAV FT AQARQQIRKLKRARPEARIIVTGCAAQTEPATFAAMAEVDRVIGNDDKTRSDAWHAAKG FT ALEAGPSFGLDTEQKIAVADIMAVREMAPHLLDGYQSGLPRVFVQVQNGCDHRCTFCII FT PYGRGNSRSVPVGAVVEQVRLLAERGHAEIVLTGVDLTSYGADLPGAPKLGTLVKKVLR FT HVPELQRLRISSIDQVEADRDLIDALATEPRLMPHLHLSLQAGDDLVLKRMKRRHCRAD FT AVAFCEEVRLLRPDIALGADLIAGFPTETEEMFQRSLDLVEECGLTFLHVFPYSPRPGT FT PAARMPQLDGRVIRDRAARLRAAGEAALQRRLDAEIGATRAVLIESPTQGRTEHFLPVA FT ISGATPGDVQTLRIIGHDGARLTA" FT CDS complement(276543..277205) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0252" FT /product="conserved hypothetical protein" FT /function="InterPro IPR000051 COGs COG2264" FT /db_xref="UniProtKB/TrEMBL:Q6ND57" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25696.1" FT /translation="MSTSTITDPIAFIHANTRLREVPLVPEMMLHVADEALPLWSKTEE FT ELGEAGLPPPFWAFAWAGGQALARYVLDHPQDVAGKEVIDLASGSGLVAIAAMKAGARS FT VTAFDIDGFAREAILVNAAANGVAIEVCGDDLLAGPHPLPAQAVLAGDIFYQQDIAGLA FT FTFLQNRVAQGARVLIGDPGRYYLPKDRLVQLASYGVPVTRELEDSEIKHTGVWTLK" FT CDS complement(277390..277803) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0253" FT /product="DUF589" FT /function="COGs COG2947" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="InterPro:IPR002740" FT /db_xref="PDB:2GBS" FT /db_xref="UniProtKB/TrEMBL:Q6ND56" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25697.1" FT /translation="MAYWLVKSEPSVWSWDQQVAKGAAGEAWTGVRNHSAKLHMVAMRR FT GDRAFYYHSNEGKEIVGIAEIIREAYPDPTDASGKFVCVDIKADKPLKTPVTLAAVKAE FT PRLADMALMKYSRLSVQPVTAEEWKLVCKMGGL" FT CDS complement(277806..278795) FT /codon_start=1 FT /transl_table=11 FT /gene="gpdA" FT /locus_tag="RPA0254" FT /product="putative glycerol-3-phosphate dehydrogenase" FT /function="InterPro IPR006168 COGs COG0240" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:P61746" FT /db_xref="InterPro:IPR006109" FT /db_xref="UniProtKB/Swiss-Prot:P61746" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25698.1" FT /translation="MGSLNSIAVLGGGAWGTALAQTAARAGRKVTLWEHDAGNAEHLIA FT ARESRFLPGVRLEPSIQVTRDLAEAARADALLLVVPAQVLRQVVTSLQPLIAPRTPLVA FT CAKGIEHGTHRFMTEIIAEAAPAAIPAILSGPSFAADVARGLPTAVTIAATDAACAQAL FT AQAMNSGSFRPYHSTDVRGVELGGATKNVLAIAAGIVEGRQLGASALAAMTTRGFVELV FT RFGKAYGARIETMHGLSGLGDLTMCCSTPQSRNFSFGMALGRGEGIESAAHGKLAEGYY FT TAPVLLEMAQAKDIDMPISTAVAAVLGGKLSVDAAIEGLLTRPLKAEE" FT sig_peptide complement(278733..278795) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.989) with cleavage site probability FT 0.955 atresidue 21" FT CDS complement(278831..280000) FT /codon_start=1 FT /transl_table=11 FT /gene="gcp" FT /locus_tag="RPA0255" FT /product="putative o-sialoglycoprotein endopeptidase (gcp)" FT /function="InterPro IPR000905 COGs COG0533" FT /db_xref="GOA:Q6ND54" FT /db_xref="InterPro:IPR017861" FT /db_xref="UniProtKB/Swiss-Prot:Q6ND54" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25699.1" FT /translation="MIAFQDPAMLREARRTPVRAQTQGLNLTSEQALLVLGIETTCDET FT AAAVVERRADGSGRLLSNIVRSQTDEHAPFGGVVPEIAARAHVDVLDGIIAAAMNEAGV FT AFASLSGVAAAAGPGLIGGVIVGLTTAKAIALVHGTPLIAVNHLEAHALTPRLTDSVEF FT PYCLFLASGGHTQIVAVLGVGNYVRLGTTVDDAIGEAFDKIAKMLGLPYPGGPQVERAA FT EAGDPNRFAFPRPMLGRQDANFSLSGLKTAVRNEAGKLTPLDPQDINDLCAGFQAAVLE FT SVADRLGAGLRLFKERFGPPKALVAAGGAAANQAIRRMLREVAAKVQTTLIVPPPALCT FT DNGAMIAWAGAERLALGLTDTMDTAPRARWLLDANATAPAKFANTRAGF" FT CDS 280147..280893 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0256" FT /product="putative UROPORPHYRINOGEN-III synthase" FT /function="InterPro IPR003754" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND53" FT /db_xref="InterPro:IPR003754" FT /db_xref="UniProtKB/TrEMBL:Q6ND53" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25700.1" FT /translation="MALLVTRPQPDGDATAKALRAKGYDVLLAPMLRFEPVPFPDDPDA FT HYTGVIVTSANALRALDDQPVLARLLKLPLFAVGKHTARKAQDAGFSDVIVADGDAAKL FT RIKIRDTFSGKDKRAGALLYLAGADLSRDLAGELREDGFDVVMQTAYRMVPLPSLPADV FT CDAFAANRIEAVLHYSRRSARAFIDATRTSGIEISALAIPQCCLSEAVSEVVREAGANQ FT VMVARKPDEKALLEALDRALGPAKVN" FT CDS 280945..282354 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0257" FT /product="conserved unknown protein" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="UniProtKB/TrEMBL:Q6ND52" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAE25701.1" FT /translation="MVENRPEHEQAAEPAEHHQPTGEETSTAATGAEAEAAAEIAPEAE FT PAQGPEQAFDIAADQRKQAEQAAGLPEPEFATTTAAADASATAQSSAAPRNSIASLILP FT PVLTIAIATGLVVGAAKMGLLPQFLSSTSVTAPQADPAAFDALNARIAKLEAAPTAGGA FT TAVPSDSAALEALAIRITNLEARPKAASDGAAAADPAATGRIDALEKSVASLRDDLTAL FT RSQTDQLAATVKDLKAAPGASADEAKPSAEAAGADKAAALEQTTAALAAIDRRLGALET FT AAKAEAEKPAPKSTPAEDGALRRAVAATLLDLAVTQGQPFQALLKAAAPLAPDAGSLNP FT LDRFAATGVPSARALGQELIDQLPNLLPDKTHSNANFIDRFQANAERLVKIQRSDAVEG FT IDRTAIVGRLTAAAKQGDIAAALKELKALAPGDRAPVQSWIDKAEARDQALAASHQFAT FT AALGALQKPSP" FT misc_feature 281236..281304 FT /note="1 probable transmembrane helix predicted byTMHMM2.0" FT CDS 282363..284060 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0258" FT /product="unknown protein" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND51" FT /db_xref="InterPro:IPR016982" FT /db_xref="UniProtKB/TrEMBL:Q6ND51" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAE25702.1" FT /translation="MLRIVLFLVIIALAAAGAAWVADQPGEVVLSWNDWKASMTLPVFA FT LVIGAGVVAVMLAWAIILGVVRAPGWMKRGRSSRRSARARNAITQGLLAVGHGDSSTAR FT LHANAARRHAPHDPLALLLQAQSAQLEGDREGARRAFLAMAARKDTKSLGMRGLYIEAQ FT RADDPYAALAIAEEALRVQPNCAWASQAVLGFRCARSDWTGALEILERNLSAGLIDKKA FT FRRQRAVLLTARAIDLEESDESLARDSALEANKLAPTLVPAAVLAAKYLAEAHQVRRAM FT KVIEAAWQAQPHPDLASTYANLKPGDTATARLGRVENLVGKGPQQLESALAIARAAIDA FT GSFSRARTVLQPYLDMPTQRVAMLMAEIEHGDRGDTAKARAWTLRAVRALHDPVWTADG FT YVSDHWRPVSPVTGRLDAFQWQVPVSALPSSKAVVVDDKFHDALIASSAGETLPASTTS FT EAVTVTVEAAPEAPIVAPKEPTAVVEEPAKADKPAKTTEAPAEAVAPPAASSSPLFHRR FT KEAAPVIPIVRAPDDPGVDEDAAPEEFPERAPTTAGQSSGWRGYRPPR" FT sig_peptide 282363..282428 FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 1.000) with cleavage site probability FT 0.994 atresidue 22" FT misc_feature order(282375..282428,282492..282560) FT /note="2 probable transmembrane helices predicted FT byTMHMM2.0" FT tRNA 284219..284294 FT /gene="tRNA-Thr2" FT /locus_tag="RNA_4" FT /product="tRNA_Thr" FT /inference="non-experimental evidence, no additional FT details recorded" FT terminator 284605..284624 FT /note="TransTerm prediction, 98+%" FT CDS complement(284749..285531) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0259" FT /product="HTransmembrane sensor and HAMP domains" FT /function="InterPro IPR003660" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND50" FT /db_xref="InterPro:IPR003660" FT /db_xref="UniProtKB/TrEMBL:Q6ND50" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25703.1" FT /translation="MQFDLSNRNLAQKISILVLGITLFASVAIGGVGEMVLHKVTDSHA FT KQAASVASLDRLVGQGGATLSPVRAADGSIVGMLVMQQDAGPVVMPASYEGQGLVVQAS FT ETVVTSTPDYGVGAARTMLLLAGVVVFAVVGLVGTRISRGLLAPLGELEKDVERLASGD FT TSVRIHALSRSDEIGRIARSIAKIQQSLIELAKLKSHRVLDGTNGILSNLKEMWMDLKG FT AVSNAREMLFTDGRTVSETLSRSWSSWLHNGLGVPKRA" FT misc_feature complement(order(285118..285183,285421..285486)) FT /note="2 probable transmembrane helices predicted FT byTMHMM2.0" FT sig_peptide complement(285439..285531) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.892) with cleavage site probability FT 0.775 atresidue 31" FT CDS 286170..287165 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0260" FT /product="possible photosynthesis gene regulator, AppA/PpaA FT family" FT /db_xref="UniProtKB/TrEMBL:Q6ND49" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25704.1" FT /translation="MRMLRFDPEQRRVSVSGAPFAPRQRRCRLFDGPTAARGDPIPALP FT SAAATVSSHSFSILFFGRGQPDRVRAVHTESIVSTVIPHLVVKHTSAKTRVAQDPAEAR FT AAELARLLIAPNLADAFDLIHKSLARAASPTALFTGLFEPTARSLGNLWAEDACSEFEV FT TIGLCHLQTAMRRISFDLLSAPLARSQPRSVLLVSQPGEPHSFCAALHAELLRQAGWNT FT VSEFPDTDRALSELVANGWFDAVNISLSPALRREHWLPRMAETIRKLRAASRNPALAVV FT ASGRVFAERSDAVALVGADAATISSVQIERCLMRSLLNRTARPAANFAWI" FT CDS 287243..288424 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0261" FT /product="unknown protein" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="UniProtKB/TrEMBL:Q6ND48" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAE25705.1" FT /translation="MLAGLPTRPTRAPPPYSNRASVLSVMPSEGLVMQSETKSYPFDHL FT PMIDYDAHPAYGRVMSMPMLGARLKAITIFGYGFCLTTAQRMIDVEHLPRPVDTGNRFV FT TTLRSLPTYLRLIMLQRLGRFSAGSAYAPKTERGTAVFTPLARDGFAAVQLGPDKIVEL FT RNQLEAAFKTLEHRVAIPGDPDSTRVVIDPTAAPDLYKWFNQVAADAGLTEAASGYLKR FT PVGIGRIAADVSEAPNGALSSPFADVSVDASPCDGFKVDDSYNVLKMVVYLGETGAANG FT PLTYVAGSNRAGRRFWDAMIRRANDLCGLSSTLPAARETFYALPAGLQRKATFGADLVA FT DSNFTTAIAENQVAVTSSQGNAVIYDPAGIHRDGVPSQGRRSAVIVTFTELPR" FT CDS complement(288452..289750) FT /codon_start=1 FT /transl_table=11 FT /gene="rlp2" FT /locus_tag="RPA0262" FT /product="ribulose bisphosphate carboxylase-like protein; FT rubisco-like protein" FT /function="InterPro IPR000685 COGs COG1850" FT /EC_number="4.1.1.39" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND47" FT /db_xref="InterPro:IPR000685" FT /db_xref="PDB:2QYG" FT /db_xref="UniProtKB/Swiss-Prot:Q6ND47" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25706.1" FT /translation="MTPDDIAGFYAKRADLDLDNYIELDFDFECAGDPHEAAAHLCSEQ FT STAQWRRVGFDEDFRPRFAAKVLELSAEPRPSGFSVPVECAARGPVHACRVTIAHPHGN FT FGAKIPNLLSAVCGEGVFFSPGIPLIRLQDIRFPEPYLAAFDGPRFGIAGVRERLQAFD FT RPIFFGVIKPNIGLPPQPFAELGYQSWTGGLDIAKDDEMLADVDWCPLAERAALLGDAC FT RRASAETGVPKIYLANITDEVDRLTELHDVAVANGAGALLINAMPVGLSAVRMLRKHAT FT VPLIAHFPFIAAFSRLANYGIHSRVMTRLQRLAGFDVVIMPGFGPRMMTPEHEVLDCIR FT ACLEPMGPIKPCLPVPGGSDSAATLENVYRKVGSADFGFVPGRGVFGHPMGPAAGATSI FT RQAWDAIAAGIPVPDHAASHPELAAALRAFGGR" FT CDS complement(289865..290287) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0263" FT /product="Protein of unknown function UPF0047" FT /function="InterPro IPR001602 COGs COG0432" FT /db_xref="InterPro:IPR001602" FT /db_xref="UniProtKB/TrEMBL:Q6ND46" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25707.1" FT /translation="MQIQRHRIELATTAPIQLIDITDQVRRFVTSSGIKEGLVTVSCLH FT TTARINVNEREEKLERDMLTFLKRFVPRDGDYLHNLDPVDGRDNAHSHLIGLFMNSSET FT IPVAKGTMVLGEWQSVFFIELDGPRERRGVELQIIG" FT CDS 290514..292451 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0264" FT /product="possible O-antigen acetylase" FT /function="InterPro IPR002656 COGs COG1835" FT /db_xref="GOA:Q6ND45" FT /db_xref="InterPro:IPR002656" FT /db_xref="UniProtKB/TrEMBL:Q6ND45" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25708.1" FT /translation="MRPAYRSDIDGLRAIAVLLVVGFHAFPAEVRGGFIGVDVFFVISG FT FLITSIICQALDRGDFSFATFYARRINRIFPALLLVLAACAIGGWFLQFPVDYRDAGKA FT IGFGAAFLANIALLHDSGYFDTSSELNPLLHLWSLGVEEQFYLLWPPVIILAWRWKNGA FT VVAAVAILLTSFVTNLLLTPTHQSAAFYLPVTRFWELMTGCLLAIATATRAAPLAQHAA FT RLRNIGAVAGLALIATGATLIDRSRAFPGWWAVLPVLGAALLIASGPGTWVGRRLLGNR FT AMVYVGLISYPLYLWHWPVLAAIRIVRLGEEPPPLMKLIAVLVAFGLADFTYRFVEPKI FT RYRPTRAKTAAAFAGVALVGLVGAGIYVAGGVPSRFSAGVQIVARDHQAEAMPAYRLKS FT CFLSSGSTFARECDDAALPGVPRIALWGDSHAAHLYPGLRAVQESEGGFVLSQYTTAGC FT PPIFGYVSVQTQGCTAANATARERLKAVKPDTVILVARQWHDYDGADRDPAAIDAMIKA FT TLAELHSIGIRRIVVVGKFPSWRTPPKRILAQAYRSEAAGLITASEIPTRDGPPKLDRS FT EAEANERLRAFFTAQGIEFISPTPVYCNDQGCLLAVPGSGTPVTFDGSHLTIASSQFFV FT RQIAKELLGR" FT misc_feature order(290547..290603,290613..290672,290733..290801, FT 290814..290867,291000..291068,291096..291164, FT 291183..291242,291270..291338,291357..291425, FT 291468..291521,291558..291626) FT /note="11 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS complement(292504..293670) FT /codon_start=1 FT /transl_table=11 FT /gene="algJ" FT /locus_tag="RPA0265" FT /product="possible AlgJ protein, required for O-acetylation FT of alginate in Pseudomonas aeruginosa." FT /db_xref="UniProtKB/TrEMBL:Q6ND44" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25709.1" FT /translation="MAAITTSPGRWLRRIAAAAFVAMPVWTLWNLAVPSHAVRIGPALV FT GVTQQVPFDLSLHGFIDGALQKAAVLRIADAMPLRRTLIRLNNQIAYSLFGEITAPGIL FT IGRDGELVQRGYLEEYCSRTIGQADTMADAAIPLLRHIQAYYRDRGKLFLYIVTPSKVA FT DMPDKFTHLIACPSSPRARAELVPAYVARLRAAGIDVLDLATSIHAMRSDATPPFPRGG FT IHWNELAMARGSRLIVDAINAQAGHELLSPFSFTVTVSLPAEGRDRDLAELANLLVAPI FT DYPTPKLTYSHPSCDGREATRIDAALVGTSFIDPVSEVLTEQACLTRLGQYFYLKLGRS FT RGGVRQDHLSEAELREVRDVDVMLLEENESLIGRQQYLSLLHQIVTTP" FT sig_peptide complement(293557..293670) FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 0.724) with cleavage site probability FT 0.651 atresidue 38" FT CDS complement(293673..295085) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0266" FT /product="putative alginate o-acetyltransferase AlgI" FT /function="InterPro IPR001150:IPR004299 COGs COG1696" FT /db_xref="GOA:Q6ND43" FT /db_xref="InterPro:IPR019777" FT /db_xref="UniProtKB/TrEMBL:Q6ND43" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25710.1" FT /translation="MLFYDPLFLTCFPFLYVLYFAAREARTKRWILLIGSGLFYLWGEP FT LFVPVVVASALIDHLLARRIAGSSSVPTKRALLALGVVQNLAILIIYKYTSFALESLNV FT LLAAGKFSALPVWHIALPIGVSFVTFEKITYLVDSYRGVSQPARRFSDYCLFVFFFPKL FT LAGPILKYHEIDRQIAVPRGFEWSDCGAGLARFAQGAFKKLLIADPLGHYADQVFGADP FT ATLSMGAAWLGTVCFTLQIYFDFSGYSDMAIGIARMLGFSLRENFNMPYISRSITEFWR FT RWHISLTTWIRDYLYIPLGGNRGSALVTYRNLWICFLLSGLWHGASWNFVLWGAYNGLF FT LTLDRVFLERWLQRGGAVIATMATLLIVMLGWVIFRSPDTAHLGGFFAALAGFGHATAW FT LPPPVSVLWTAALGAALSLIPALPAFGSLGAAWRSSGVLRVAGYVGLGALGTIAIARAV FT AIPFQPFIYFRF" FT misc_feature complement(order(293706..293771,293793..293858, FT 293889..293939,293961..294020,294081..294146, FT 294339..294404,294696..294752,294792..294857, FT 294930..294995,295017..295073)) FT /note="10 probable transmembrane helices predicted FT byTMHMM2.0" FT tRNA complement(295291..295365) FT /gene="tRNA-Gly2" FT /locus_tag="RNA_39" FT /product="tRNA_Gly" FT /inference="non-experimental evidence, no additional FT details recorded" FT CDS 295679..296599 FT /codon_start=1 FT /transl_table=11 FT /gene="trx" FT /locus_tag="RPA0267" FT /product="possible thioredoxin" FT /function="InterPro IPR000312:IPR005746:IPR006662:IPR006663 FT COGs COG3118" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND42" FT /db_xref="HSSP:1KEB" FT /db_xref="InterPro:IPR013766" FT /db_xref="UniProtKB/TrEMBL:Q6ND42" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25711.1" FT /translation="MTILEQGSGAAPQAAADLIKDTTTQSFVRDVIEESKRQPVLIDFW FT AQWCGPCKQLTPILEKAVRAANGKVKLVKMNIDEHPSIPGQMGIQSIPAVIAFVDGRPA FT DGFMGAVPESQVNAFIEKLTAGMPGGAPTAAELLQEAEAVLAEGDVQTAASIYAEVLRA FT DGTNVAAIAGLARCYMQTGATEQAKKTLGLVPEAKREDAAVKAVQAMIDLAEQAQSLGP FT IAELEQKVAADPLDHQARFDLAIALNAADRREDATTHLLDIVKRDRKWNDDGARKQLVQ FT FFEAWGPTDDATVEGRKRLSTILFS" FT CDS 296626..297303 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0268" FT /product="putative Lon family ATP-dependent protease" FT /function="InterPro IPR003111 COGs COG2802" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND41" FT /db_xref="InterPro:IPR003111" FT /db_xref="UniProtKB/TrEMBL:Q6ND41" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25712.1" FT /translation="MPINAAYRGPADLPEVIPVFPLAGALLLPRGQMPLNIFEPRYLAM FT IDDALRDGHRLIGMIQPDAAHSSETAEKPSLFNVGCVGRITQLAESGDGRYILELTGVS FT RFKVVDELQVLTPYRQCKVDYFPFVDDFTARKGEDEVDRETLLSVLTDFLKANNLKVDW FT DGVESAPNEALVNALAMMSPYGPPEKQALLEAPDLKTRAEILIAVTEMDLAKKRTSGDP FT PLQ" FT CDS 297393..297590 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0269" FT /product="DUF343" FT /function="InterPro IPR005651 COGs COG2835" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="InterPro:IPR005651" FT /db_xref="UniProtKB/Swiss-Prot:Q6ND40" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25713.1" FT /translation="MSLSPSERPDTVDRKLLDILVCPVTKGPLEFDPARQELISRGAKL FT AYPIRDGIPIMLPEEARKLG" FT CDS complement(297726..299087) FT /codon_start=1 FT /transl_table=11 FT /gene="ubiH" FT /locus_tag="RPA0270" FT /product="putative UbiH protein, FT 2-octaprenyl-6-methoxyphenol 4-monoxygenase" FT /function="InterPro IPR000689:IPR000733 COGs COG0654" FT /EC_number="1.14.13.-" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND39" FT /db_xref="InterPro:IPR018168" FT /db_xref="UniProtKB/TrEMBL:Q6ND39" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25714.1" FT /translation="MPRGHAGDFPPPALSVRNRPGNSGLVLETCFAQLRSGRKDHGARV FT RNMTAPRSIVIGGGAFAGLALALALRQGLGPEVPVIVADPALALRPSRDPRATAIVAAC FT RRLFEALGVWDEVAPTAQPIIDMVVTDSHLEDATRPVFLTFAGEVQPGEPFAHMVENRY FT LVEALAKRAEAEGVELRATPVTSYDARTEAIGVTLGDGSVIDASLLVAADGAKSKLRQR FT AGIATYGWDYDQSGIVVTVEHERDHNGCAEEHFLPAGPFAILPLTGRRSSLVWSESRRD FT AERIVALPEKEFQRELEKRFGLRLGDIKPLDKPKSFPLGYFVAQSFIAPRLALIGDAAH FT VIHPIAGQGLNMGLRDVAALAEVVVDAARLGIDPGQVDVLERYQRWRRFDTVAMGVATN FT GLNFLFSNNSPLLRGIRDIGLGLVDRLPPLKGAFIRQAAGLTGEIPRLLKGEAL" FT CDS 299186..300061 FT /codon_start=1 FT /transl_table=11 FT /gene="tesB" FT /locus_tag="RPA0271" FT /product="acyl-CoA thioesterase II" FT /function="InterPro IPR003703 COGs COG1946" FT /note="Citation: Kuveret et al. (1995) J. Arch. Microbiol. FT 164:337-345" FT /db_xref="GOA:Q6ND38" FT /db_xref="InterPro:IPR003703" FT /db_xref="UniProtKB/TrEMBL:Q6ND38" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAE25715.1" FT /translation="MSKSLIDLISILDLEPLEVNLFRGTSPKTSWQRVFGGQVIGQAMV FT AGCRTVENRLPHSLHCYFILPGDPQVPIIYQVERLRDGRSYTTRRVTAIQHGNAIFSLM FT MSFHDDEPTNFDHQDKMPDVPPPEALSAEEIVKQPFFKDMPDFIKRYYESDRPIELRPV FT ELKRYFGQKIHDGRIHVWIKTAAKLPDDPALHMCALAYASDFSLLDAVMARYGRTLFDK FT RMMPASLDHAMWFHRPFRADEWLLYAQDSPSAQGGRGLTRGQIFKTDGTLVASVAQEGS FT VRERRDTPKG" FT CDS 300253..300591 FT /codon_start=1 FT /transl_table=11 FT /gene="glnK1" FT /locus_tag="RPA0272" FT /product="GlnK, nitrogen regulatory protein P-II" FT /function="InterPro IPR002187:IPR002332 COGs COG0347" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND37" FT /db_xref="InterPro:IPR017918" FT /db_xref="UniProtKB/TrEMBL:Q6ND37" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25716.1" FT /translation="MKLVVAIIKPFKLDEVRQALTEIGVHGMTVTEVKGYGRQRGHTEI FT YRGAEYIVNFLPKLRIEIAVDSALADKAVEVITRGARTGQIGDGKIFVTPIDRALRIRT FT GETDVDAL" FT CDS 300666..301997 FT /codon_start=1 FT /transl_table=11 FT /gene="amtB1" FT /locus_tag="RPA0273" FT /product="ammonium transporter AmtB" FT /function="InterPro IPR001905 COGs COG0004" FT /db_xref="GOA:Q6ND36" FT /db_xref="InterPro:IPR018047" FT /db_xref="UniProtKB/TrEMBL:Q6ND36" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25717.1" FT /translation="MTLLLRRAASAATGYILATFGLAAVGVTPALAQGMATAAPGISPA FT DTAWMTVATAFVLMMTIPGLALFYSGMVRKKNVLATMAQSLAAVALISILWVAFGYSLA FT FTGSGSLIGSFDRIFLAGMTMDSVNPAAKTIPEALFMLYQMTFAVITVALVAGSVADRM FT RFSAYLLFSIGWFIFVYVPLAHWIWGGGFLGAMGVLDFAGGLVVHLSAGTGGLVAAIVI FT GRRHGYGMENLSPFDLSLAVIGTGLLWVGWFGFNGGSALAADSRAVFAITATHLAACSG FT ALTWGAIEWMARRKPSVLGMISGAVAGLGTITPASGYVEPWHGVVIGIVAGLICYWACT FT WLKHRLRYDDSLDVFGVHGIGGLTGTFLAGIFATASIGGVSGALEGSWMQPLTQLAGIL FT VTFVWSAVATYVLLKAVSLFVALRVSREHEIEGLDISQHGEALQ" FT sig_peptide 300666..300764 FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 1.000) with cleavage site probability FT 0.906 atresidue 33" FT misc_feature order(300702..300770,300813..300881,300918..300986, FT 301077..301145,301164..301232,301275..301334, FT 301371..301424,301467..301535,301554..301622, FT 301635..301688,301725..301793,301836..301904) FT /note="12 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS 302307..302645 FT /codon_start=1 FT /transl_table=11 FT /gene="glnK2" FT /locus_tag="RPA0274" FT /product="GlnK, nitrogen regulatory protein P-II" FT /function="InterPro IPR002187:IPR002332 COGs COG0347" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND35" FT /db_xref="InterPro:IPR017918" FT /db_xref="UniProtKB/TrEMBL:Q6ND35" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25718.1" FT /translation="MKIVMAIIKPFKLEEVRDALTAIGVHGLTVTEVKGYGRQKGHTEI FT YRGAEYAVSFLPKIKIEVAIANEQVEKTIEAITSAAKTGQIGDGKIFVIGLDHAVRIRT FT GEADAAAL" FT CDS 302683..304125 FT /codon_start=1 FT /transl_table=11 FT /gene="amtB2" FT /locus_tag="RPA0275" FT /product="putative ammonium transporter AmtB" FT /function="InterPro IPR001905 COGs COG0004" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND34" FT /db_xref="InterPro:IPR018047" FT /db_xref="UniProtKB/TrEMBL:Q6ND34" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25719.1" FT /translation="MTFKRPYGAGLAVLAAGMFAATAAYAEPTVNKGDNAWMLTSTVLV FT LLMTIPGLALFYGGLVRSKNMLSVLAQVFYTVCIACIIWALYGYSLAFTGGSDFIGGFS FT KAFLAGVTTDSKAATFSVDANISELVYVCFQMTFCAITPALIVGAFAERTRFAAVALFI FT PLWITLIYLPMAHMVWYWAGPDAINDAAKALAAAADEAAKTAAQAKLDEVNADSGFLFK FT KGAIDFAGGTVVHINAGIAGLVGALLVGRRTGYGKELMAPHSLTMTMIGASLLWVGWFG FT FNAGSNLEASGGAALAMTNSFVATAAAALSWMFAEWIFKGHPSVLGALSGAVAGLVAVT FT PAAGFSGPMGAIVLGLVVGVVCLFFCTVVKNALKYDDSLDVFGVHAVGGIVGAIGTGIL FT VNPALGGTGVYDYVAGKVGDYDMTTQLISQCWGVGTTVLLSGIGSAILYKVVDVIVGLR FT APVEVEREGLDLVEHTERAYNM" FT sig_peptide 302683..302763 FT /note="Signal predicted by SignalP 2.0 HMM (Signal FT peptideprobabilty 1.000) with cleavage site probability FT 0.980 atresidue 27" FT misc_feature order(302701..302760,302788..302856,302893..302961, FT 303067..303135,303154..303222,303364..303432, FT 303469..303528,303556..303624,303643..303711, FT 303721..303789,303823..303891,303958..304026) FT /note="12 probable transmembrane helices predicted FT byTMHMM2.0" FT terminator 304210..304235 FT /note="TransTerm prediction, 98+%" FT CDS 304243..304590 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0276" FT /product="PAP/25A core domain:DNA polymerase, beta-like FT region" FT /function="InterPro IPR001201:IPR002934 COGs COG1669" FT /db_xref="GOA:Q6ND33" FT /db_xref="InterPro:IPR002934" FT /db_xref="UniProtKB/TrEMBL:Q6ND33" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25720.1" FT /translation="MARGSQGFAPEACYTASMNRRTALEILKNSEAPLRARGVRRAALF FT GSVARGTNLPDSDIDVLIEIDPTARITVFDYVELKDYIAGLFDHSVDVVNRDQLKPSVA FT PSAAQDAIYAF" FT CDS 304743..304937 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0277" FT /product="conserved hypothetical protein" FT /function="COGs COG2361" FT /db_xref="InterPro:IPR008201" FT /db_xref="UniProtKB/TrEMBL:Q6ND32" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25721.1" FT /translation="MSEDIKNRHSSVPWKQIAGSGNVYRHDYEDVAAQMIWETVQRALP FT ALKAMVAEELARCDEQRPQ" FT CDS 304991..306286 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0278" FT /product="putative N-succinyldiaminopimelate FT aminotransferase" FT /function="InterPro IPR004838:IPR004839 COGs COG0436" FT /EC_number="2.6.1.17" FT /db_xref="GOA:Q6ND31" FT /db_xref="InterPro:IPR015421" FT /db_xref="UniProtKB/TrEMBL:Q6ND31" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25722.1" FT /translation="MVADLFPLDPPWRSGAVKTGVFRMALSASTSPARAAGSVDAAGQS FT ERSPFARLTELLAPYQPGQSLINLSVGEPQHPVPDFVGAVLARYTAEFGRYPLAKGIEP FT FRKAASAWLTKRFALDRAPDPETEVLVLNGSREGLFLAAIAAARYVPKRDGTPAILMPN FT PFYPAYAAGARAAGCEAVFLPTTLANGFLPDLDQLDEATLKRTVAIYLASPANPQGSVA FT ARDYFVQLKQLADRYGFMILSDECYSEIYTQVAPGSALQVAGPNFRNVVVFQSLSKRSN FT LAGMRVGFVAGDANFLKAYHELRNVAAPQVPIPLQQVAVAAYSDEAHVEENRRLYRLKF FT DLADQILGARYGYQRPAGGFCLWLDVSAHGGDEAATVMLFKDGGVRVVPGSYLARPQAD FT GSNPGAGYIRVAMVQDSETTAEALHRLVRILG" FT CDS 306300..308768 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0279" FT /product="possible FtsK/SpoIIIE family" FT /function="InterPro IPR001687:IPR002543:IPR003593 COGs FT COG1674" FT /db_xref="GOA:Q6ND30" FT /db_xref="InterPro:IPR003593" FT /db_xref="UniProtKB/TrEMBL:Q6ND30" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25723.1" FT /translation="MSMPAIERAFPLVGHLPPSVREVLARRLRELAGFGLIALAAVAAA FT ALATWSVQDPSLSHATSRRIHNLLGYPGAIGADLAMQILGLGAIGLLMPVAVWGWRMLN FT HRPFDRTALRMGAWFLCTIFAAGFASSFPHDTAWPLPTGLGGVVGDALVRAPSLVVGPG FT LIFRVILSFILGAAVLATFLIAGGFGSREREPDEATSDEDLPLEDEEESDRGSVSLGWL FT VHALLSAKARLWRLAKLSYQGLVSSAPATGKQGFERQEPRLGGRAAPPIAPEADHHDDY FT EPEPVEEIEDEDDEEEAPPVARAPRKKAAPKPVAKKARFDLPSVNVLSAPKASDRQPLS FT KSELEANSRALEGVLQDFGVRGEIIKASPGPVVTLYELEPAPGIKSSRVIGLSDDIARS FT MSALSARVAVVPGRNAIGIELPNAHREKVYLRELLSVKDTNETVHKLPLCLGKNIGGES FT IIVDLARMPHLLIAGTTGSGKSVAINTMILSLVYRLRPDQCRLIMVDPKMLELSVYDGI FT PHLLTPVVTDPKKAVVALKWAVREMEERYKRMAKLGVRNIDGYNTRLGEAKAKGEELTR FT TVHTGFDKETGKAIYEEEKLDLEPLPYIVIIVDEMADLMMVAGKDIEGAVQRLAQMARA FT AGLHVILATQRPSVDVITGTIKANFPTRISFQVTSKIDSRTILGEMGAEQLLGQGDMLY FT MAGGGRISRVHGPFVSDEEVEKVVKHLKAQGAPEYLEAVTAEEPSEEDGAVFDATGMGG FT DGGGDLFQQAVAIVKRDRKASTSYIQRRLQIGYNRAASLMERMELEGIVGQPNHAGKRE FT ILVAEEDSNF" FT misc_feature order(306390..306458,306531..306599,306636..306695, FT 306705..306773,306786..306854) FT /note="5 probable transmembrane helices predicted FT byTMHMM2.0" FT CDS 308786..309727 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0280" FT /product="unknown protein" FT /function="COGs COG2834" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND29" FT /db_xref="InterPro:IPR004564" FT /db_xref="UniProtKB/TrEMBL:Q6ND29" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAE25724.1" FT /translation="MQGTDTGSRNRHSAPVAADQHRGDAVTAVQDMSLIKQFNDLMPNW FT TTGTGLRQLCAAAAVVAIIGAAIRPAAAEPVPAPKPSPRATQLSAAEPKQRTPQAPAQP FT VTKLTTPPEPVIPDPRRNVPASIFNTFDAAQKAEAAKASTYLSSLQTLVGQFVQVGPDG FT SKLTGDFYIMKPGRVRFEYDDPSPISMIADGQSVVVRDRKLATQDVYPLSQTPLRYLLS FT DRLDLLRDTNVVSITSDDLYSNIIIEEKNAVIGTSRLLLMFGTKDGQLKQWTVTDPQGY FT DTTVAVYNLDTTRRPDPSMFKIDYTNYGTPPG" FT CDS 310015..310827 FT /codon_start=1 FT /transl_table=11 FT /gene="xthA1" FT /locus_tag="RPA0281" FT /product="possible exodeoxyribonuclease III" FT /function="InterPro IPR000097:IPR000834:IPR004808:IPR005135 FT COGs COG0708" FT /db_xref="GOA:Q6ND28" FT /db_xref="InterPro:IPR000097" FT /db_xref="UniProtKB/TrEMBL:Q6ND28" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25725.1" FT /translation="MRLTLTTWNINSVRLRIDLVAKFLKAQRPDILCLQETKCPDDAFP FT LKRFKRLGYEHIALNGQKGYHGVAVISKLPFVTTDIRTFCDIIDSRHISVSVKTDENAP FT PLVLHNFYVPAGGDIPDPAVNPKFKHKLSFLDEMKACEPLHPSGDQRHILVGDLNVAPH FT EHDVWSHKQLLKVVSHTPVECEKLLAVLRAGNWVDVARERIPLDQKVYTWWSYRAADWT FT VGDRGRRLDHIWVSEALKDRVVDFKVLRDARSWERPSDHVPVTMTMEL" FT CDS complement(310879..311328) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0282" FT /product="Cyclic nucleotide binding protein" FT /function="InterPro IPR000595 COGs COG0664" FT /db_xref="InterPro:IPR014710" FT /db_xref="UniProtKB/TrEMBL:Q6ND27" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25726.1" FT /translation="MSIEDDVALLARVSTLRLLGEQALRMLAIGSEQRDFARGDVMFNV FT GEPADAGYVVQRGAFQITMENGGVHETVARPGDLIGELALVMPMRRQTTAVALEYSTAI FT RIARSLFQRVLESDPGAALRLRDEFAARANQVASDIVMVGSKLTS" FT CDS complement(311368..312054) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0283" FT /product="two-component transcriptional regulator, winged FT helix family" FT /function="InterPro IPR001789:IPR001867 COGs COG0745" FT /note="observed by proteomics" FT /note="Citation: Proteomics from VerBerkmoes et al. (2003) FT unpublished" FT /db_xref="GOA:Q6ND26" FT /db_xref="HSSP:1KGS" FT /db_xref="InterPro:IPR001867" FT /db_xref="UniProtKB/TrEMBL:Q6ND26" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25727.1" FT /translation="MPNARKILIVDDDNDLRDALVEQLSLHEEFEASAVDTGAKGVQTA FT KALSPDLVLMDVGLPDTDGREVVRSLRKGGFKAPIIMLTGHDTDSDTILGLESGANDYV FT AKPFRFAVLLARIRAQLRQHEASEDAVFTVGPYSFRPGSKMLTGANAKKVRLTEKETAI FT LRFLYRAGQAPVSRETLLQEVWGYNSGVTTHTLETHIYRLRQKIERDAANPEILVTEAG FT GYKLVP" FT CDS 312219..312782 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0284" FT /product="conserved hypothetical protein" FT /db_xref="InterPro:IPR005490" FT /db_xref="UniProtKB/TrEMBL:Q6ND25" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="CAE25728.1" FT /translation="MKKITKSAPSRKSPRPLTRVQVRAAAGQRSRGWLITGGLTIPVAL FT GRGGILANKREGDGGTPRGTFHPLRLWWRPDRGPRPRTHLPIRIIGPDDAWCEDPKSRH FT YNRPIHRSSAGEGDRLMRDDHLYDLIVEIDHNTRPRIAGRGSAVFLHLARDNFGPTAGC FT VAMTRGNLQRLLARIGPRTKIVIG" FT CDS complement(312863..313522) FT /codon_start=1 FT /transl_table=11 FT /locus_tag="RPA0285" FT /product="Protein of unknown function UPF0001" FT /function="InterPro IPR001608 COGs COG0325" FT /db_xref="InterPro:IPR011078" FT /db_xref=" |