EBI Dbfetch

ID   BT045540; SV 1; linear; mRNA; STD; VRT; 2138 BP.
XX
AC   BT045540;
XX
DT   10-OCT-2008 (Rel. 97, Created)
DT   10-OCT-2008 (Rel. 97, Last updated, Version 1)
XX
DE   Salmo salar clone ssal-rgf-524-201 Galactocerebrosidase precursor putative
DE   mRNA, complete cds.
XX
KW   FLI_CDNA.
XX
OS   Salmo salar (Atlantic salmon)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Euteleostei; Protacanthopterygii;
OC   Salmoniformes; Salmonidae; Salmoninae; Salmo.
XX
RN   [1]
RP   1-2138
RG   cGRASP (B.F. Koop & W.S. Davidson)
RA   Leong J., von Schalburg K., Cooper G., Moore R., Holt R., Davidson W.S.,
RA   Koop B.F.;
RT   "Salmo salar full-length cDNAs";
RL   Unpublished.
XX
RN   [2]
RP   1-2138
RG   cGRASP (B.F. Koop & W.S. Davidson)
RA   Leong J., von Schalburg K., Cooper G., Moore R., Holt R., Davidson W.S.,
RA   Koop B.F.;
RT   ;
RL   Submitted (08-OCT-2008) to the EMBL/GenBank/DDBJ databases.
RL   Biology - Centre for Biomedical Research, University of Victoria, Victoria,
RL   BC V8W 2Y2, Canada
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2138
FT                   /organism="Salmo salar"
FT                   /mol_type="mRNA"
FT                   /clone="ssal-rgf-524-201"
FT                   /tissue_lib="full-length cDNA library"
FT                   /tissue_type="mixed brain, kidney, spleen"
FT                   /db_xref="taxon:8030"
FT   gene            1..2138
FT                   /gene="GALC"
FT   CDS             47..2047
FT                   /codon_start=1
FT                   /gene="GALC"
FT                   /product="Galactocerebrosidase precursor"
FT                   /note="predicted complete coding region. syn. - GALCERase,
FT                   Galactosylceramidase, Galactosylceramide
FT                   beta-galactosidase, Galactocerebroside beta-galactosidase"
FT                   /db_xref="GOA:B5X3C1"
FT                   /db_xref="InterPro:IPR001286"
FT                   /db_xref="InterPro:IPR013781"
FT                   /db_xref="InterPro:IPR017853"
FT                   /db_xref="UniProtKB/Swiss-Prot:B5X3C1"
FT                   /protein_id="ACI33802.1"
FT                   /translation="MIYKLYFAIALCFSLCFDLCIAESYVLDDKVGLGRTFDGIGGLSG
FT                   GGATSRLLVNYAEPYRSQILDYLFKPNFGASLHILKVEIGGDAQTTDGTEPSHMHYEND
FT                   ENFFRGYEWWLMREAKKRNPNITLIGLPWAFPGWVGHGKNWPYDFPDITASYVVSWILG
FT                   AKHYHDLNIDYVGIWNERNFDSKYIKLLRYTLDKSGLERVRIIASDNLWQPITYSLCVD
FT                   QELADAVDVIGAHYPGTTTVIEALKTQKKLWSSEDYSTFNDEVGGGCWARILNQNYVNG
FT                   LMTATISWNLVASYYEDLPFGRDGLMTAEEPWTGNYVVESPIWITAHTTQFSQPGWTYL
FT                   QTVGHLVHGGSYVALTDSNGNLTVVIETMTHDHSVCIRPPLLPFNVTAQNVTFQLKGSF
FT                   ALIKELQVWQSRFDFKTKKPFFFKKLSPLKISDGSFTLSLDVDEVYTLTTISTGLKGTY
FT                   PDPPTSGPFPKVYFDDFNVANPSFSEAPDFADQTGVFEYYINLTDPGPHVFTLRQVVTQ
FT                   MPVTWATDADQTISVIGDYKWQNLTVTCDVFMETVKTGGVFIAARVDKGGQSVRSAKGV
FT                   FFWVFADGSYKVTNDLVGKTVLAEGLSGTRAYGWHTLTLTVEGQYATGLLNGYPLWKDA
FT                   VVLGPKNGWAAIGTHSFELAQFDNFAVEAKL"
XX
SQ   Sequence 2138 BP; 579 A; 480 C; 540 G; 539 T; 0 other;
     tgcagcgtta acagtgcagt cagacttttt ggaaacattg atcaggatga tttataaatt        60
     atattttgct atcgccttgt gttttagttt gtgttttgat ctctgtattg ccgagagcta       120
     cgttttggat gataaagttg gattaggaag aacgtttgac ggcattggtg gtttgagtgg       180
     tggaggggca acatctcgtc tacttgtcaa ttatgcagaa ccctaccgca gccagatatt       240
     ggactatctc ttcaagccaa actttggggc ttctctacac atcctgaaag tggagattgg       300
     aggtgatgcc caaaccacag atggaacgga accctctcac atgcactatg aaaatgatga       360
     gaacttcttc cgagggtatg aatggtggct gatgagagaa gccaagaaga ggaaccccaa       420
     catcactctc ataggcttgc catgggcctt tccgggttgg gttggacatg ggaagaactg       480
     gccgtatgac ttccctgata ttaccgcatc ctacgtggtg tcgtggattt taggagccaa       540
     acactaccat gacctgaata ttgattatgt cgggatttgg aatgaacgga acttcgacag       600
     caagtacatc aagctgctgc ggtacactct ggataagagt ggtttggaga gggtcagaat       660
     catagccagt gataaccttt ggcagcccat aacctattca ttgtgtgtcg atcaagagct       720
     ggccgacgca gtagacgtga taggggccca ctacccaggc accaccacag tgatagaggc       780
     cctgaagacc cagaagaagc tatggtcgtc tgaagactac agcaccttta acgacgaggt       840
     gggaggaggc tgctgggccc ggatcctcaa ccagaactat gtcaacggac tcatgactgc       900
     caccatatcc tggaacctgg tagccagtta ctatgaggac cttccctttg ggagagatgg       960
     cctaatgacc gcagaggagc cgtggactgg gaactatgtg gtggaatcac ccatctggat      1020
     aactgcccac accacccagt ttagccagcc aggatggacc tatctgcaaa ccgttgggca      1080
     tctggtacac gggggaagtt atgttgccct gaccgacagt aacggaaacc tcactgttgt      1140
     aatagaaacc atgactcatg atcattctgt gtgcatcaga cctccactcc tgcccttcaa      1200
     tgtcacagcc cagaatgtaa cattccaact caagggatct tttgctttga tcaaggaact      1260
     acaggtgtgg cagtcaaggt ttgacttcaa gactaaaaag ccgttcttct tcaagaaatt      1320
     gagcccctta aagatttctg atggttcgtt caccttgagc ctggatgttg atgaggttta      1380
     cactttaacc accatatcca ctggactgaa agggacttac cctgatccac ccacctctgg      1440
     cccattccct aaagtttact ttgatgactt taatgttgcc aacccttcct tctctgaggc      1500
     cccagacttt gctgaccaga cgggggtgtt tgagtattac attaacctga cggaccctgg      1560
     tcctcatgtc ttcactttgc gccaggtggt cacacagatg cctgttacct gggcaacaga      1620
     tgctgaccag accatcagcg tcattggaga ctataaatgg cagaacctga cagtgacgtg      1680
     tgatgtcttc atggagacgg tgaagactgg gggagtgttc atcgcagcca gagtggacaa      1740
     aggagggcag tctgtccgta gcgccaaggg agtcttcttc tgggtgttcg cagatggctc      1800
     ctacaaagtc accaatgacc tagttggcaa gactgtactg gcagagggtc tgtctggaac      1860
     gagagcgtat ggctggcaca cgttaaccct cacagtcgag gggcagtatg ccacagggtt      1920
     gctgaatgga tatccactat ggaaggatgc tgtggtattg ggaccaaaga atggctgggc      1980
     tgccatagga acacactcat ttgaacttgc acagtttgac aactttgctg tggaagcaaa      2040
     attataattt ttctgtgttt tgtggtgaat aaaccttggt cattaattta ttggcacaaa      2100
     aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaga                              2138
//