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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BT030479; SV 1; linear; mRNA; STD; MAM; 1537 BP.
XX
AC   BT030479;
XX
DT   08-MAY-2007 (Rel. 91, Created)
DT   27-NOV-2008 (Rel. 97, Last updated, Version 2)
XX
DE   Bos taurus ST3 beta-galactoside alpha-2,3-sialyltransferase 1 (ST3GAL1),
DE   mRNA, complete cds.
XX
KW   FLI_CDNA.
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OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-1537
RX   DOI; 10.1101/gr.170101
RX   PUBMED; 11282978.
RA   Smith T.P., Grosse W.M., Freking B.A., Roberts A.J., Stone R.T., Casas E.,
RA   Wray J.E., White J., Cho J., Fahrenkrug S.C., Bennett G.L., Heaton M.P.,
RA   Laegreid W.W., Rohrer G.A., Chitko-McKown C.G., Pertea G., Holt I.,
RA   Karamycheva S., Liang F., Quackenbush J., Keele J.W.;
RT   "Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries
RT   and construction of a gene index for cattle";
RL   Genome Res. 11(4):626-630(2001).
XX
RN   [2]
RP   1-1537
RX   DOI; 10.1186/1471-2164-6-166
RX   PUBMED; 16305752.
RA   Harhay G.P., Sonstegard T.S., Keele J.W., Heaton M.P., Clawson M.L.,
RA   Snelling W.M., Wiedmann R.T., Van Tassell C.P., Smith T.P.;
RT   "Characterization of 954 bovine full-CDS cDNA sequences";
RL   BMC Genomics 6:166-166(2005).
XX
RN   [3]
RP   1-1537
RA   Harhay G.P., Sonstegard T.S., Van Tassell C.P., Clawson M.L., Heaton M.P.,
RA   Keele J.W., Snelling W.M., Weidmann R.T., Smith T.P.L.;
RT   ;
RL   Submitted (04-MAY-2007) to the EMBL/GenBank/DDBJ databases.
RL   USDA-ARS U.S. Meat Animal Research Center, P.O. Box 166, Spur 18D, Clay
RL   Center, NE 68933, USA
XX
DR   Ensembl-Gn; ENSBTAG00000001156; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000001538; Bos_taurus.
XX
CC   Contact: Gregory P. Harhay at gregory.harhay@ars.usda.gov.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1537
FT                   /organism="Bos taurus"
FT                   /lab_host="Escherichia coli DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="2BOV"
FT                   /clone="2BOV4F14; plate 4 row F column 14"
FT                   /tissue_type="pooled"
FT                   /note="Vector: pCMV SPORT6; Site_1: NotI; Site_2: SalI;
FT                   Library made from pooled tissue from testis, thymus,
FT                   semitendonosus muscle, longissimus muscle, pancreas,
FT                   adrenal, and endometrium."
FT                   /db_xref="taxon:9913"
FT   gene            1..1537
FT                   /gene="ST3GAL1"
FT                   /note="putative, similar to GeneID: 6482"
FT   CDS             15..1034
FT                   /codon_start=1
FT                   /gene="ST3GAL1"
FT                   /product="sialyltransferase 4A"
FT                   /db_xref="GOA:A5D960"
FT                   /db_xref="InterPro:IPR012163"
FT                   /db_xref="UniProtKB/TrEMBL:A5D960"
FT                   /protein_id="ABQ12919.1"
FT                   /translation="MRKRTLKVLTLLLLFIFLTSFFLNYSHTMLATTWFPKQMVHELSE
FT                   NFKKLMKYSNRPCTCTRCIGQRRVSSWFDERFNRSMQPLLTAKNALLEEDTYNWWLRLQ
FT                   REKQPNNLNDTIKELFQVVPGDVDPLLEKGSVGCRRCAVVGNSGNLRESWYGPQIDSHD
FT                   FVLRMNKAPTAGFEADVGRKTTHHLVYPESFRELAENVSMVLVPFKTVDLEWVISATTK
FT                   GTISHTYVPVPAKIKVKKNKILIYHPAFIKYVFDSWLQGHGRYPSTGILSVIFSLHVCD
FT                   EVDLYGFGADSKGNWHHYWENNPSAGAFRKTGVHDGDFESNVTATLASINKIRIFKGR"
XX
SQ   Sequence 1537 BP; 335 A; 478 C; 435 G; 289 T; 0 other;
     cagaaaaggc gaccatgagg aaaagaactc tcaaagtgct cacgctcctc ctcctgttca        60
     tcttcctcac ctctttcttc ctgaactact ctcacaccat gctggccacc acctggttcc       120
     ccaagcagat ggtccatgag ctctcggaga acttcaagaa gctcatgaag tattccaaca       180
     ggccctgtac ctgtactcgc tgcatcgggc agcgcagggt ctcctcctgg ttcgacgagc       240
     gattcaaccg gtccatgcag ccgctgctga cggccaagaa cgcactcctg gaggaagaca       300
     cgtacaactg gtggctgagg ctccagcggg agaagcagcc taataacctg aacgacacca       360
     tcaaggagct gttccaggtg gtgcctgggg acgtggaccc cctgctggag aagggctcgg       420
     tgggctgccg gcgctgcgcc gtcgtgggca actcgggcaa cctgagggag tcctggtacg       480
     ggcctcagat agacagtcac gactttgtgc tcaggatgaa caaggccccc actgcagggt       540
     ttgaggccga cgtcgggagg aagactaccc accacctcgt gtaccccgag agcttcaggg       600
     agctggcaga gaacgtcagc atggtcctgg tccccttcaa gactgtcgac ctggagtggg       660
     tgatcagcgc caccaccaag ggcaccatct cccataccta cgttcctgtc cccgccaaga       720
     tcaaagtgaa aaagaataag atcctgattt accacccggc cttcatcaag tacgtcttcg       780
     acagctggct gcagggccac gggcggtacc cgtccaccgg catcctgtcc gttatcttct       840
     cactgcacgt ctgtgacgag gtggacttgt atggcttcgg ggcggacagc aaagggaact       900
     ggcaccacta ctgggaaaac aacccatcgg cgggggcttt tcggaagact ggggtacacg       960
     atggggactt cgagtccaac gtgacggcca ccttggcgtc catcaacaaa atccggatct      1020
     tcaagggaag atgacgctgc gaaggcctga ggacaggtgc cccacatgcg actccgcatc      1080
     cagccccagc ttctcaccgg agctgttctt ctccaggaac ttccaggacc agcctcaggg      1140
     gtgtgcccag gtgcccctcg cagcctcttg caccccaaca tttggcagca tctactcagc      1200
     aaggtcaccg acccctgcca gggctgcaga gcaagtctca gaaccagtct cgggagggga      1260
     gaacccccgc ctcgctgctg ttctgggctg ggggaggcgg ggagactctg gagaggcccc      1320
     atcctaggag tcccatgttc tagacgagag gatggtctcc cggggggaag cacagagact      1380
     acgctgccga ggggtccggg gccaacactc tgattcttgc tcggaagttt ctgggtaaag      1440
     atgacctcca tgagagccac cccacctccc ctttctgccc aaagatcatt aaactgtggc      1500
     catgaggggt ccccgccctg aaggtcttca ggaccct                               1537
//
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