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EBI DbfetchID BT026328; SV 1; linear; mRNA; STD; MAM; 2196 BP. XX AC BT026328; XX DT 26-JUL-2006 (Rel. 88, Created) DT 27-NOV-2008 (Rel. 97, Last updated, Version 3) XX DE Bos taurus aldehyde dehydrogenase 3 family, member B1 (ALDH3B1), mRNA, DE complete cds. XX KW FLI_CDNA. XX OS Bos taurus (cattle) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bos. XX RN [1] RP 1-2196 RX DOI; 10.1101/gr.170101 RX PUBMED; 11282978. RA Smith T.P., Grosse W.M., Freking B.A., Roberts A.J., Stone R.T., Casas E., RA Wray J.E., White J., Cho J., Fahrenkrug S.C., Bennett G.L., Heaton M.P., RA Laegreid W.W., Rohrer G.A., Chitko-McKown C.G., Pertea G., Holt I., RA Karamycheva S., Liang F., Quackenbush J., Keele J.W.; RT "Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries RT and construction of a gene index for cattle"; RL Genome Res. 11(4):626-630(2001). XX RN [2] RP 1-2196 RX DOI; 10.1186/1471-2164-6-166 RX PUBMED; 16305752. RA Harhay G.P., Sonstegard T.S., Keele J.W., Heaton M.P., Clawson M.L., RA Snelling W.M., Wiedmann R.T., Van Tassell C.P., Smith T.P.; RT "Characterization of 954 bovine full-CDS cDNA sequences"; RL BMC Genomics 6:166-166(2005). XX RN [3] RP 1-2196 RA Harhay G.P., Sonstegard T.S., Van Tassell C.P., Clawson M.L., Heaton M.P., RA Keele J.W., Snelling W.M., Weidmann R.T., Smith T.P.L.; RT "Sequencing and analysis of Bos taurus full-length insert cDNA clones"; RL Unpublished. XX RN [4] RP 1-2196 RA Harhay G.P., Sonstegard T.S., Van Tassell C.P., Clawson M.L., Heaton M.P., RA Keele J.W., Snelling W.M., Weidmann R.T., Smith T.P.L.; RT ; RL Submitted (25-JUL-2006) to the EMBL/GenBank/DDBJ databases. RL Molecular Genetic Research Unit, USDA-ARS U.S. Meat Animal Research Center, RL P.O. Box 166, Spur 18D, Clay Center, NE 68933 XX DR Ensembl-Gn; ENSBTAG00000013093; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000016003; Bos_taurus. XX CC Contact: Gregory P. Harhay at harhay@email.marc.usda.gov. XX FH Key Location/Qualifiers FH FT source 1..2196 FT /organism="Bos taurus" FT /lab_host="Escherichia coli DH10B" FT /mol_type="mRNA" FT /clone_lib="3BOV" FT /clone="3BOV59K12; plate 59 row K column 12" FT /tissue_type="pooled" FT /note="Vector: pCMV SPORT6; Site_1: NotI; Site_2: SalI; FT Library made from pooled tissue from marrow, alveolar FT macrophage, ovary, fetal semitendonosus muscle, and fetal FT longissimus muscle." FT /db_xref="taxon:9913" FT gene 1..2196 FT /gene="ALDH3B1" FT /note="putative, similar to GeneID: 221" FT CDS 283..1689 FT /codon_start=1 FT /gene="ALDH3B1" FT /product="aldehyde dehydrogenase 3B1" FT /db_xref="GOA:Q1JPA0" FT /db_xref="InterPro:IPR012394" FT /db_xref="UniProtKB/Swiss-Prot:Q1JPA0" FT /protein_id="ABG81484.1" FT /translation="MDPFADTLQRLREAFVSGRTRPAEFRDAQLKGLSRFLRENKQLLQ FT EALAQDLHKSAFEAEVSEISISQNEINLALRNLRTWMKDEKVSKNLATQLDSAFIRKEP FT FGLVLILSPWNYPLNLSLGPLVGALAAGNCVVLKPSEISKNTEKVLAEVLPRYLDQSCF FT AVVLGGPQETGRLLEHKFDYIFFTGNPQVGKIVMTAAAKHLTPVTLELGGKNPCYVDDN FT CDPQTVANRVAFFRCFNAGQTCVAPDYVLCSPEMQAQLVPALQSAITRFYGDDPQSSPN FT LGRIISQKHFQRLRGLLSCGRVVIGGQSDECDLYIAPTVLVDVQETDPVMQEEIFGPIL FT PIVNVRSLGQAIDFINRREKPLALYAFSNSSQVVKRVLAQTSSGGFCGNDGFMHLTLAS FT LPFGGVGSSGMGNYHGKFSFDTFSHHRACLLRRPGLEKIYAIRYPPHTPRNLRVLLMAM FT ETRSCSCTLL" FT repeat_region 2038..2172 FT /rpt_family="MIRb" XX SQ Sequence 2196 BP; 386 A; 706 C; 690 G; 414 T; 0 other; aagtggctgc agcggccgtt ggtggccaca ctcccccggt tgctccactc aggcctgctg 60 ggctcagggc tgccgtctct gggaggagtg cggagcaggg cgggggctgt ggcttagggg 120 ctcgtttccc tgcggcagga agacgcgtgg tcccccggct gcctgctcgc ccttaggggt 180 tgtggagtag cagttcccca gcccaggcct gggcccgtga ctgccctggg gtccagggct 240 ctcctgtcca ctggccgagg ggcgtgatct gtagttctgt agatggaccc ctttgcagat 300 accctgcagc ggctgcggga agccttcgtc tcggggcgca cgcggccggc cgagttccgg 360 gacgcccagc tgaagggcct gagccgcttc ctgcgagaga acaagcagct tctgcaggag 420 gcgctggctc aggacctgca caagtcagcc ttcgaggcag aggtgtctga aatcagcatt 480 agccagaacg agattaactt ggcccttagg aacctgagga cctggatgaa ggatgagaaa 540 gtgtccaaga acctggccac gcagctggac tcggccttca tccggaagga gccctttggc 600 ctggtgctca tcctgtctcc ctggaactat cctctgaacc tgagcctggg gcccctggtg 660 ggtgccctcg cagcagggaa ctgcgtggtg ctgaaaccct cggagatcag caagaacact 720 gagaaggtcc tggccgaggt gctgccccga tacctggacc agagctgctt tgccgtggtg 780 ctgggtgggc cccaggagac agggcggctg ctggagcaca agttcgacta catattcttc 840 acggggaacc ctcaagttgg caagattgtc atgactgccg ccgccaagca cctgacgccc 900 gtcacgctgg agctgggagg caagaacccc tgctacgtgg acgacaactg cgacccccag 960 accgtggcca accgggtggc cttctttcgc tgtttcaacg ctggccagac ctgcgtggcc 1020 cccgactatg tcctgtgcag tcccgagatg caggcgcagc tggtgcccgc cctgcagagc 1080 gccatcaccc gtttctatgg cgacgacccc cagagctccc caaacctggg ccgcatcatc 1140 agccagaagc atttccagcg gctccggggc ctgctgagct gtggccgcgt ggtcatcggc 1200 ggccagagtg acgaatgcga tctctacatc gcccccacgg tgctggtgga cgtgcaggag 1260 accgatccgg tgatgcagga ggaaatcttc gggcccatcc tacctatcgt gaacgtgagg 1320 agcctgggcc aggccatcga cttcatcaac cgtcgggaga agcccctggc cctgtacgcc 1380 ttctccaaca gcagccaggt ggtcaagcgg gtcctggccc agaccagcag cgggggcttc 1440 tgcgggaacg acggcttcat gcacttgacc ctggccagcc tgcctttcgg aggagtgggc 1500 agcagcggga tgggcaatta ccacggcaag ttctccttcg acaccttctc ccaccaccgc 1560 gcctgcctgc tgcgccgccc cgggctggag aagatctacg ccatccgcta cccgccccac 1620 actccgcgca acctgagggt gctgctgatg gccatggaga cccgcagctg cagctgcacc 1680 ctgctgtgag cccaccccag gcgcggggca ctgagcgtcc ctcccacccc acacccatga 1740 gtcctccgct gccgtggcca cctgaggctg gtggagacac gacctgggat ccacgatgca 1800 gggggaaagg acctgccaag gccacagtcc agaccagtgc ttgccctcct ctcacccagg 1860 gcttctcttt tcaggccctc agctgccccg caaccaggat gggccaaggt gtgggcacgt 1920 gggagactgt gtaacctgct ctctggctcc cagggtggcc acctatgtcc caggagagtc 1980 gggcagctgt gggcacttct cgggacctct ctttctgtgg aggggtgcag aaggggtcct 2040 ggcatctggt ccatgccctg ctgtggacct gctgtgacct gggttgttcc tgccctctct 2100 gagcttgtcc ccctctctgg tgtagagagg aggtgacaaa caatatctcc tgagatcact 2160 gtgaggatta aaatttggaa cataattgct gactct 2196 // |
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