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EBI DbfetchID BT026152; SV 1; linear; mRNA; STD; MAM; 1806 BP. XX AC BT026152; XX DT 14-JUL-2006 (Rel. 88, Created) DT 27-NOV-2008 (Rel. 97, Last updated, Version 2) XX DE Bos taurus hexosaminidase A (alpha polypeptide) (HEXA), mRNA, complete cds. XX KW FLI_CDNA. XX OS Bos taurus (cattle) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bos. XX RN [1] RP 1-1806 RX DOI; 10.1101/gr.170101 RX PUBMED; 11282978. RA Smith T.P., Grosse W.M., Freking B.A., Roberts A.J., Stone R.T., Casas E., RA Wray J.E., White J., Cho J., Fahrenkrug S.C., Bennett G.L., Heaton M.P., RA Laegreid W.W., Rohrer G.A., Chitko-McKown C.G., Pertea G., Holt I., RA Karamycheva S., Liang F., Quackenbush J., Keele J.W.; RT "Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries RT and construction of a gene index for cattle"; RL Genome Res. 11(4):626-630(2001). XX RN [2] RP 1-1806 RX DOI; 10.1186/1471-2164-6-166 RX PUBMED; 16305752. RA Harhay G.P., Sonstegard T.S., Keele J.W., Heaton M.P., Clawson M.L., RA Snelling W.M., Wiedmann R.T., Van Tassell C.P., Smith T.P.; RT "Characterization of 954 bovine full-CDS cDNA sequences"; RL BMC Genomics 6:166-166(2005). XX RN [3] RP 1-1806 RA Harhay G.P., Sonstegard T.S., Van Tassell C.P., Clawson M.L., Heaton M.P., RA Keele J.W., Snelling W.M., Weidmann R.T., Smith T.P.L.; RT "Sequencing and analysis of Bos taurus full-length insert cDNA clones"; RL Unpublished. XX RN [4] RP 1-1806 RA Harhay G.P., Sonstegard T.S., Van Tassell C.P., Clawson M.L., Heaton M.P., RA Keele J.W., Snelling W.M., Weidmann R.T., Smith T.P.L.; RT ; RL Submitted (13-JUL-2006) to the EMBL/GenBank/DDBJ databases. RL Molecular Genetic Research Unit, USDA-ARS U.S. Meat Animal Research Center, RL P.O. Box 166, Spur 18D, Clay Center, NE 68933 XX DR Ensembl-Gn; ENSBTAG00000012981; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000017261; Bos_taurus. XX CC Contact: Gregory P. Harhay at harhay@email.marc.usda.gov. XX FH Key Location/Qualifiers FH FT source 1..1806 FT /organism="Bos taurus" FT /lab_host="Escherichia coli DH10B" FT /mol_type="mRNA" FT /clone_lib="1BOV" FT /clone="1BOV14I3; plate 14 row I column 3" FT /tissue_type="pooled" FT /note="Vector: pCMV SPORT6; Site_1: NotI; Site_2: SalI; FT Library made from pooled tissue from lymph node, ovary, FT fat, hypothalamus, and pituitary." FT /db_xref="taxon:9913" FT gene 1..1806 FT /gene="HEXA" FT /note="putative, similar to GeneID: 3073" FT CDS 36..1625 FT /codon_start=1 FT /gene="HEXA" FT /product="hexosaminidase A preproprotein" FT /db_xref="GOA:Q0V8R6" FT /db_xref="InterPro:IPR015882" FT /db_xref="UniProtKB/Swiss-Prot:Q0V8R6" FT /protein_id="ABG66991.1" FT /translation="MAGSTLRFSLLLAAAFAGRATALWPWPQYIQTSELRYTIFPQSFQ FT FQYHLSSAAQVGCSVLDEAFQRYRDLLFGSVAFRFPHPIEKRHTSEKNSLVVLVVTPGC FT DQFPSLGSVENYTLTINDEQSLLLSETVWGALRGLETFSQLIWRSPEGTFYVNKTDIED FT FPRFPHRGLLLDTSRHYLPLASILDTLDVMAYNKFNVFHWHLVDDSSFPYESFTFPELT FT KKGSYNPATHIYTAQDVKEVIEYARLRGIRVLAEFDTPGHTLSWGPGVPGLLTPCYSGS FT HPSGTFGPVNPALNNTYEFMSTFFLEISTVFPDFYLHLGGDEVDFTCWKSNPDIQAFMK FT KKGFGDDFKKLESFYIQTLLDIVSAYGKGYVVWQEVFDNKVKVRPDTIIQVWREEIPVK FT YVKELALVTRAGFRALLSAPWYLNHITYGPDWKEIYLVEPLAFEGSPEQKALVIGGEAC FT MWGEYVDSTNLVPRLWPRAGAVAERLWSNKMVSNLDFAFKRLAHFRCELLRRGVQAQPL FT SVGYCDMEFEQT" XX SQ Sequence 1806 BP; 381 A; 498 C; 503 G; 424 T; 0 other; ggccggctgg gagagaggaa gcagaccggc gggccatggc aggctccacg ctcaggtttt 60 cgctgctgct ggcggcagcg ttcgctgggc gggcgacggc cctgtggcca tggccccagt 120 acattcagac ctctgagctg cggtacacca tcttcccgca aagcttccaa ttccagtacc 180 atctcagttc ggccgcgcag gttggctgct ccgtcctcga cgaggccttc caacgctacc 240 gtgacctgct cttcggctct gtggctttcc gttttcccca ccccatagaa aaacggcata 300 catcagagaa gaattcattg gtggtccttg ttgtcactcc tggatgtgac cagtttcctt 360 ctttggggtc tgtagagaac tacacactga ccataaatga tgagcagagt ctcctcctct 420 ccgagactgt ctggggcgcc ctgcgaggtc tggagacatt tagccagctt atatggagat 480 ctcctgaggg cacgttctat gtcaacaaga cagatattga ggacttccct cgcttccctc 540 accggggctt gttgctggat acgtctcgcc attacctgcc actggctagc atcctggaca 600 ctctggatgt catggcgtac aataaattca acgttttcca ctggcatctg gtcgatgact 660 cttctttccc atacgagagc ttcacttttc cagaactcac caaaaagggg tcctacaacc 720 ctgctaccca catctacaca gcacaggatg tgaaggaggt gattgaatat gcacggcttc 780 ggggtatccg ggtgctggca gagtttgaca ctcctggcca cactctgtcc tgggggccag 840 gtgtccctgg attattaact ccttgctact ctgggtctca cccctctggc acctttgggc 900 cagtgaatcc ggctctcaac aacacctacg agttcatgag cacattcttc ttggagatca 960 gtactgtttt cccagacttt tacctgcacc ttggaggaga tgaggttgat ttcacctgct 1020 ggaagtccaa cccagatatc caggccttta tgaagaagaa aggctttggt gatgacttca 1080 agaagctgga atccttctac atccagacgc tactggacat tgtctctgcc tatggcaagg 1140 gctacgtggt gtggcaggag gtgtttgata ataaagtaaa ggttcggcca gacacaatca 1200 tccaggtatg gcgagaagag ataccagtaa aatacgtgaa ggagttggca ctggtcacca 1260 gagctggctt tcgggccctg ctttctgccc cctggtacct gaaccatata acttatggcc 1320 ctgactggaa ggagatctac ctggtggagc ccctggcatt tgaaggtagc cctgagcaga 1380 aggccctggt gattggcgga gaggcctgta tgtggggaga gtatgtggac agcacaaacc 1440 tggtccccag gctctggcct agagcagggg ctgttgccga gaggctgtgg agcaacaaga 1500 tggtgtccaa cctggacttt gcctttaaac gtctggcaca cttccgctgt gagctgctga 1560 ggcgtggtgt ccaggcccag cccctcagcg taggctactg tgacatggag tttgaacaaa 1620 cctgagcaag tagcccccgg caccaaggag ggtactggcc cgaggagagc ggaagcgggg 1680 ccaggcttcc actgcacccc gcccggggga tgcagcccct tgcccacgtg cccctgtgcc 1740 tagagacaag ggggctggtg ctggcgctgg cgtccaataa agagtgatgt ggcgtttttc 1800 tatacc 1806 // |
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