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EBI DbfetchID BT025479; SV 1; linear; mRNA; STD; MAM; 1610 BP. XX AC BT025479; XX DT 16-MAY-2006 (Rel. 87, Created) DT 27-NOV-2008 (Rel. 97, Last updated, Version 2) XX DE Bos taurus dicarbonyl/L-xylulose reductase (DCXR), mRNA, complete cds. XX KW FLI_CDNA. XX OS Bos taurus (cattle) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bos. XX RN [1] RP 1-1610 RX DOI; 10.1101/gr.170101 RX PUBMED; 11282978. RA Smith T.P., Grosse W.M., Freking B.A., Roberts A.J., Stone R.T., Casas E., RA Wray J.E., White J., Cho J., Fahrenkrug S.C., Bennett G.L., Heaton M.P., RA Laegreid W.W., Rohrer G.A., Chitko-McKown C.G., Pertea G., Holt I., RA Karamycheva S., Liang F., Quackenbush J., Keele J.W.; RT "Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries RT and construction of a gene index for cattle"; RL Genome Res. 11(4):626-630(2001). XX RN [2] RP 1-1610 RX DOI; 10.1186/1471-2164-6-166 RX PUBMED; 16305752. RA Harhay G.P., Sonstegard T.S., Keele J.W., Heaton M.P., Clawson M.L., RA Snelling W.M., Wiedmann R.T., Van Tassell C.P., Smith T.P.; RT "Characterization of 954 bovine full-CDS cDNA sequences"; RL BMC Genomics 6:166-166(2005). XX RN [3] RP 1-1610 RA Harhay G.P., Sonstegard T.S., Van Tassell C.P., Clawson M.L., Heaton M.P., RA Keele J.W., Snelling W.M., Weidmann R.T., Smith T.P.L.; RT "Sequencing and analysis of Bos taurus full-length insert cDNA clones"; RL Unpublished. XX RN [4] RP 1-1610 RA Harhay G.P., Sonstegard T.S., Van Tassell C.P., Clawson M.L., Heaton M.P., RA Keele J.W., Snelling W.M., Weidmann R.T., Smith T.P.L.; RT ; RL Submitted (15-MAY-2006) to the EMBL/GenBank/DDBJ databases. RL Molecular Genetic Research Unit, USDA-ARS U.S. Meat Animal Research Center, RL P.O. Box 166, Spur 18D, Clay Center, NE 68933 XX DR Ensembl-Gn; ENSBTAG00000008747; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000000813; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000011525; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000053664; Bos_taurus. XX CC Contact: Gregory P. Harhay at harhay@email.marc.usda.gov. XX FH Key Location/Qualifiers FH FT source 1..1610 FT /organism="Bos taurus" FT /lab_host="Escherichia coli DH10B" FT /mol_type="mRNA" FT /clone_lib="5BOV" FT /clone="5BOV26N2; plate 26 row N column 2" FT /tissue_type="pooled" FT /note="Vector: pCMV SPORT6; Site_1: NotI; Site_2: SalI; FT Library made from pooled mRNA isolated from mammary tissues FT at eight physiological, developmental, and disease states." FT /db_xref="taxon:9913" FT gene 1..1610 FT /gene="DCXR" FT /note="putative, similar to GeneID: 51181" FT CDS 55..789 FT /codon_start=1 FT /gene="DCXR" FT /product="dicarbonyl/L-xylulose reductase" FT /db_xref="GOA:Q1JP75" FT /db_xref="InterPro:IPR002198" FT /db_xref="InterPro:IPR002347" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/Swiss-Prot:Q1JP75" FT /protein_id="ABF57435.1" FT /translation="MDLRLAGRRALVTGAGKGIGRSIVKALHAAGARVVAVSRTQADLD FT SLVRECPGVETVCVDLADWEATEQALGGVGPVDLLVNNAAVAFLQPFLEVTKEAYDMSF FT SVNLRAVIQVSQIVARGLIARGAPGVIVNVSSQASQRGLTNHSVYCSTKGALDTLTKVM FT AVELGPHKIRVNAVNPTVVMTPMGQAAWSDPQKAKAMLDRIPLGRFAEVENVVDTILFL FT LSDRSSMTTGSTVPVDGGFLAT" FT repeat_region complement(1159..1357) FT /rpt_family="MER63D" FT repeat_region complement(1376..1610) FT /rpt_family="MER63D" XX SQ Sequence 1610 BP; 340 A; 441 C; 456 G; 373 T; 0 other; ccttctgaac ccagaagcgc agctcaagat tcgcagtgtg gctgccggaa catcatggat 60 ttgagactcg cggggcgccg ggcgctcgtc acgggggcgg gcaaaggcat cggtcgcagt 120 attgtcaagg cgctacacgc ggctggcgcc cgagtggtgg ccgtgagccg gacccaggcc 180 gacctggaca gcctggtccg cgagtgcccc ggggtagaga ccgtgtgcgt ggacctagct 240 gactgggagg ccacggagca ggcgctggga ggtgttggcc ctgtggacct gctggtgaac 300 aatgcagctg tggcgtttct acagcccttc ctggaggtca ccaaggaggc atatgacatg 360 tctttcagtg tgaaccttcg ggcggtcatc caggtgtcgc agattgtggc ccgaggcctg 420 atagctcggg gagccccagg ggtcatcgtg aatgtttcta gccaggcctc ccaacgggga 480 ctgactaacc acagtgtcta ctgctccact aagggtgcct tggacacact gaccaaagtg 540 atggctgtgg agcttgggcc acacaagatc cgtgtgaatg cagtcaaccc cacggtggtg 600 atgacaccca tgggccaggc cgcctggagt gaccctcaga aggccaaggc catgctggac 660 cgcatccccc ttggcaggtt tgccgaggtg gagaacgtgg tggacaccat cctcttcctg 720 ctcagtgacc gcagcagcat gaccacaggc tccactgtgc cagtggatgg gggcttcctg 780 gctacctaag cccctcctcc atccccacac acccctgttc catgctgaac ccacctttac 840 ccccatcccc cttccccatc tcttcaggaa acatgattgt tctgtccagc ctgcacactc 900 acacttaggc tgcagtcatg tggccggaag atgcaaagct cagagctggg catggggacg 960 agtcccaggt agagacacct tttcagctct catcctgggc cagtggcagc ctggctctcc 1020 tgccagagat tttcgggcct ggctaagtcc ctggcagaca tgtaggacct tccagaaggc 1080 cagcttctaa ggagggtagt gaatttgacc aaggatggcc ttcggccctg tccggaggcc 1140 tctagggtgg aagcggtggt gtttttaacg tgaatgttca ttggtattcc ttaagtcagc 1200 gcagaaaaca aaagtgagcc ctgagcaggc tgtgtgctgg ggcttcactg ctttgttcac 1260 ggttgaatga cttctttgcc gaatcaggtg gtggttttca gttactgaga gaatattccc 1320 tcagcattgt gagtccttca ccatgtactg ggcacagtcc agcacaagat ccagctgtag 1380 aatttgccaa cttccatggt gacatattcc ctcctgtttg atgtccttta ggtggagctg 1440 gcacagagat gtctgtcctc cacttttcca tgctgtcctc accacacaga cacaaaaggc 1500 ttacactcaa aagcacagat aatagtacct gtacaaaaat gtttaggaag tgatgggttt 1560 tgagtatttg ttaatttcat tttaaaatat aactgatttc aagtttatgt 1610 // |
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