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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BT025474; SV 1; linear; mRNA; STD; MAM; 1508 BP.
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AC   BT025474;
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DT   16-MAY-2006 (Rel. 87, Created)
DT   27-NOV-2008 (Rel. 97, Last updated, Version 2)
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DE   Bos taurus cysteine dioxygenase, type I (CDO1), mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
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RN   [1]
RP   1-1508
RX   DOI; 10.1101/gr.170101
RX   PUBMED; 11282978.
RA   Smith T.P., Grosse W.M., Freking B.A., Roberts A.J., Stone R.T., Casas E.,
RA   Wray J.E., White J., Cho J., Fahrenkrug S.C., Bennett G.L., Heaton M.P.,
RA   Laegreid W.W., Rohrer G.A., Chitko-McKown C.G., Pertea G., Holt I.,
RA   Karamycheva S., Liang F., Quackenbush J., Keele J.W.;
RT   "Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries
RT   and construction of a gene index for cattle";
RL   Genome Res. 11(4):626-630(2001).
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RN   [2]
RP   1-1508
RX   DOI; 10.1186/1471-2164-6-166
RX   PUBMED; 16305752.
RA   Harhay G.P., Sonstegard T.S., Keele J.W., Heaton M.P., Clawson M.L.,
RA   Snelling W.M., Wiedmann R.T., Van Tassell C.P., Smith T.P.;
RT   "Characterization of 954 bovine full-CDS cDNA sequences";
RL   BMC Genomics 6:166-166(2005).
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RN   [3]
RP   1-1508
RA   Harhay G.P., Sonstegard T.S., Van Tassell C.P., Clawson M.L., Heaton M.P.,
RA   Keele J.W., Snelling W.M., Weidmann R.T., Smith T.P.L.;
RT   "Sequencing and analysis of Bos taurus full-length insert cDNA clones";
RL   Unpublished.
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RN   [4]
RP   1-1508
RA   Harhay G.P., Sonstegard T.S., Van Tassell C.P., Clawson M.L., Heaton M.P.,
RA   Keele J.W., Snelling W.M., Weidmann R.T., Smith T.P.L.;
RT   ;
RL   Submitted (15-MAY-2006) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Genetic Research Unit, USDA-ARS U.S. Meat Animal Research Center,
RL   P.O. Box 166, Spur 18D, Clay Center, NE 68933
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DR   Ensembl-Gn; ENSBTAG00000017442; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000023186; Bos_taurus.
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CC   Contact: Gregory P. Harhay at harhay@email.marc.usda.gov.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1508
FT                   /organism="Bos taurus"
FT                   /lab_host="Escherichia coli DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="5BOV"
FT                   /clone="5BOV18N3; plate 18 row N column 3"
FT                   /tissue_type="pooled"
FT                   /note="Vector: pCMV SPORT6; Site_1: NotI; Site_2: SalI;
FT                   Library made from pooled mRNA isolated from mammary tissues
FT                   at eight physiological, developmental, and disease states."
FT                   /db_xref="taxon:9913"
FT   gene            1..1508
FT                   /gene="CDO1"
FT                   /note="putative, similar to GeneID: 1036"
FT   CDS             212..814
FT                   /codon_start=1
FT                   /gene="CDO1"
FT                   /product="cysteine dioxygenase, type I"
FT                   /db_xref="GOA:Q3SZU4"
FT                   /db_xref="InterPro:IPR010300"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q3SZU4"
FT                   /protein_id="ABF57430.1"
FT                   /translation="MERTEVLKPRTLADLIRVLHQLFAGEEINVEEVQAVMEAYESNPA
FT                   EWAVYAKFDQYRYTRNLVDQGNGKFNLMILCWGEGHGSSIHDHTDSHCFLKMLQGNLKE
FT                   TLFAWPDKKSNEMIKKSERILRENQCAYINDSIGLHRVENISHTEPAVSLHLYSPPFDT
FT                   CHAFDQRTGHKNKVIMTFHSKFGIKTPFTTSGSLENN"
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SQ   Sequence 1508 BP; 440 A; 343 C; 337 G; 388 T; 0 other;
     atttgtgtgc gcagcgcgta cccagacccg ccagggcggg tatcttggca cgggcttctt        60
     tacgccgtgg ccctcgtgca ttcgggggct ttgtgtcgcg tgtaactgtc tagccggcgc       120
     ctaggaactc tcgcctccgg ctcctcggct cgctcagttc ctcctccatc gcagcccagc       180
     agcgagacgc gtgccgccag ttactcgggg gatggagcgg accgaggtgc taaagccccg       240
     caccctggcc gatctgatcc gcgtcctgca ccagctcttc gccggcgagg agatcaacgt       300
     ggaggaagtg caggccgtca tggaagccta tgagagcaac cccgccgagt gggcagtgta       360
     cgccaagttc gaccagtaca ggtatactcg aaatcttgtg gatcaaggaa atggaaagtt       420
     taatctcatg attctatgct ggggtgaagg acatggcagc agtatccatg atcacaccga       480
     ctcccactgc tttctgaaga tgctgcaggg aaatctaaag gagacattgt ttgcctggcc       540
     tgacaagaaa tccaatgaga tgatcaagaa gtctgaaaga atcttgaggg aaaaccagtg       600
     tgcctacatc aatgattcca ttggcttaca tcgagtagag aatattagcc atacagagcc       660
     tgccgtgagc cttcacttgt atagtccgcc ttttgacaca tgccacgcct ttgatcaaag       720
     aacaggacat aaaaacaaag tcatcatgac attccatagc aaatttggaa tcaagactcc       780
     atttacaact tcaggatccc tggagaacaa ctaaggggca ccaggccctc tgaggtttta       840
     ctttaaggtc cagcgaattc cgccttggac aggaagatct gctaccactt gcctgtccag       900
     taatacactt tacaaggcca atatgagatc taccataagg cagatgctag ttataaggca       960
     ttaagtaagc aaatagtgcc ccgagctact agagaagaaa aatcccacta aagatgaaaa      1020
     ggcttatgat tttcaaggtc aaatcaagca ggttttacct gttaaaccca tcagaaccat      1080
     actaggaatg tcaatgatag tttttatagt ttttggaaac actttggtct ctggattgta      1140
     attagcaata aataaaagca agatatcaaa ccacccgcct tgttacttgg aaggctaaat      1200
     gtagatgtct tcaatatact ttatatgttc ttaatacttg aggagaactt tttgaatctg      1260
     tgcattttat ttttccaatc ttattttaca aattcatatt ctataaataa tagagtagta      1320
     gatagataaa cttaaggcac tttgccattt ggtaattaaa tgaagggcag aagatttcaa      1380
     aaagtacgtg tacccaaacc cacaacaaac taaaactatg aactcaattt ctaatgtatc      1440
     cggtggtcag agactctgta ctgctgccag aattgccaaa taattttaat aaagttgggt      1500
     ttgaacat                                                               1508
//
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