EBI Dbfetch

ID   BT025453; SV 1; linear; mRNA; STD; MAM; 2396 BP.
XX
AC   BT025453;
XX
DT   16-MAY-2006 (Rel. 87, Created)
DT   27-NOV-2008 (Rel. 97, Last updated, Version 4)
XX
DE   Bos taurus aldehyde dehydrogenase 3 family, member B1 (ALDH3B1), mRNA,
DE   complete cds.
XX
KW   FLI_CDNA.
XX
OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-2396
RX   DOI; 10.1101/gr.170101
RX   PUBMED; 11282978.
RA   Smith T.P., Grosse W.M., Freking B.A., Roberts A.J., Stone R.T., Casas E.,
RA   Wray J.E., White J., Cho J., Fahrenkrug S.C., Bennett G.L., Heaton M.P.,
RA   Laegreid W.W., Rohrer G.A., Chitko-McKown C.G., Pertea G., Holt I.,
RA   Karamycheva S., Liang F., Quackenbush J., Keele J.W.;
RT   "Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries
RT   and construction of a gene index for cattle";
RL   Genome Res. 11(4):626-630(2001).
XX
RN   [2]
RP   1-2396
RX   DOI; 10.1186/1471-2164-6-166
RX   PUBMED; 16305752.
RA   Harhay G.P., Sonstegard T.S., Keele J.W., Heaton M.P., Clawson M.L.,
RA   Snelling W.M., Wiedmann R.T., Van Tassell C.P., Smith T.P.;
RT   "Characterization of 954 bovine full-CDS cDNA sequences";
RL   BMC Genomics 6:166-166(2005).
XX
RN   [3]
RP   1-2396
RA   Harhay G.P., Sonstegard T.S., Van Tassell C.P., Clawson M.L., Heaton M.P.,
RA   Keele J.W., Snelling W.M., Weidmann R.T., Smith T.P.L.;
RT   "Sequencing and analysis of Bos taurus full-length insert cDNA clones";
RL   Unpublished.
XX
RN   [4]
RP   1-2396
RA   Harhay G.P., Sonstegard T.S., Van Tassell C.P., Clawson M.L., Heaton M.P.,
RA   Keele J.W., Snelling W.M., Weidmann R.T., Smith T.P.L.;
RT   ;
RL   Submitted (15-MAY-2006) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Genetic Research Unit, USDA-ARS U.S. Meat Animal Research Center,
RL   P.O. Box 166, Spur 18D, Clay Center, NE 68933
XX
DR   Ensembl-Gn; ENSBTAG00000013093; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000016003; Bos_taurus.
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CC   Contact: Gregory P. Harhay at harhay@email.marc.usda.gov.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2396
FT                   /organism="Bos taurus"
FT                   /lab_host="Escherichia coli DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="2BOV"
FT                   /clone="2BOV93G21; plate 93 row G column 21"
FT                   /tissue_type="pooled"
FT                   /note="Vector: pCMV SPORT6; Site_1: NotI; Site_2: SalI;
FT                   Library made from pooled tissue from testis, thymus,
FT                   semitendonosus muscle, longissimus muscle, pancreas,
FT                   adrenal, and endometrium."
FT                   /db_xref="taxon:9913"
FT   gene            1..2396
FT                   /gene="ALDH3B1"
FT                   /note="putative, similar to GeneID: 221"
FT   repeat_region   310..341
FT                   /rpt_unit_seq="tg"
FT   CDS             483..1889
FT                   /codon_start=1
FT                   /gene="ALDH3B1"
FT                   /product="aldehyde dehydrogenase 3B1 isoform a"
FT                   /db_xref="GOA:Q1JPA0"
FT                   /db_xref="InterPro:IPR012394"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q1JPA0"
FT                   /protein_id="ABF57409.1"
FT                   /translation="MDPFADTLQRLREAFVSGRTRPAEFRDAQLKGLSRFLRENKQLLQ
FT                   EALAQDLHKSAFEAEVSEISISQNEINLALRNLRTWMKDEKVSKNLATQLDSAFIRKEP
FT                   FGLVLILSPWNYPLNLSLGPLVGALAAGNCVVLKPSEISKNTEKVLAEVLPRYLDQSCF
FT                   AVVLGGPQETGRLLEHKFDYIFFTGNPQVGKIVMTAAAKHLTPVTLELGGKNPCYVDDN
FT                   CDPQTVANRVAFFRCFNAGQTCVAPDYVLCSPEMQAQLVPALQSAITRFYGDDPQSSPN
FT                   LGRIISQKHFQRLRGLLSCGRVVIGGQSDECDLYIAPTVLVDVQETDPVMQEEIFGPIL
FT                   PIVNVRSLGQAIDFINRREKPLALYAFSNSSQVVKRVLAQTSSGGFCGNDGFMHLTLAS
FT                   LPFGGVGSSGMGNYHGKFSFDTFSHHRACLLRRPGLEKIYAIRYPPHTPRNLRVLLMAM
FT                   ETRSCSCTLL"
FT   repeat_region   2238..2372
FT                   /rpt_family="MIRb"
XX
SQ   Sequence 2396 BP; 410 A; 757 C; 774 G; 455 T; 0 other;
     tcccaacgaa gtggctgcag cggccgttgg tggccacact cccccggttg ctccactcag        60
     gcctgctggg ctcagggctg ccgtctctgg gaggagtgcg gagcagggcg ggggctgtgg       120
     cttaggggct cgtttccctg cggcaggaag acgcgtggtc ccccggctgc ctgctcgccc       180
     ttaggggttg tggagtagca gttccccagc ccaggcctgg gcccgtgact gccctggggt       240
     ccagggctct cctgtccact ggccgagggg cgtgatctgt agttctgtag tgggtgtcta       300
     agtgtgtcct gtgtgtgatt gtgtgtggtg tgtgtgtgtg taggtggggc agcccgggtc       360
     cctgggatta cgtatgagtc cccgagggag tgtccgtggg cccatctggg tgcgggcagg       420
     ggccagggag ggggccacgg aagtgagggc accctgaccc acgctgcccc ccgcccggca       480
     ggatggaccc ctttgcagat accctgcagc ggctgcggga agccttcgtc tcggggcgca       540
     cgcggccggc cgagttccgg gacgcccagc tgaagggcct gagccgcttc ctgcgagaga       600
     acaagcagct tctgcaggag gcgctggctc aggacctgca caagtcagcc ttcgaggcag       660
     aggtgtctga aatcagcatt agccagaacg agattaactt ggcccttagg aacctgagga       720
     cctggatgaa ggatgagaaa gtgtccaaga acctggccac gcagctggac tcggccttca       780
     tccggaagga gccctttggc ctggtgctca tcctgtctcc ctggaactat cctctgaacc       840
     tgagcctggg gcccctggtg ggtgccctcg cagcagggaa ctgcgtggtg ctgaaaccct       900
     cggagatcag caagaacact gagaaggtcc tggccgaggt gctgccccga tacctggacc       960
     agagctgctt tgccgtggtg ctgggtgggc cccaggagac agggcggctg ctggagcaca      1020
     agttcgacta catattcttc acggggaacc ctcaagttgg caagattgtc atgactgccg      1080
     ccgccaagca cctgacgccc gtcacgctgg agctgggagg caagaacccc tgctacgtgg      1140
     acgacaactg cgacccccag accgtggcca accgggtggc cttctttcgc tgtttcaacg      1200
     ctggccagac ctgcgtggcc cccgactatg tcctgtgcag tcccgagatg caggcgcagc      1260
     tggtgcccgc cctgcagagc gccatcaccc gtttctatgg cgacgacccc cagagctccc      1320
     caaacctggg ccgcatcatc agccagaagc atttccagcg gctccggggc ctgctgagct      1380
     gtggccgcgt ggtcatcggc ggccagagtg acgaatgcga tctctacatc gcccccacgg      1440
     tgctggtgga cgtgcaggag accgatccgg tgatgcagga ggaaatcttc gggcccatcc      1500
     tacctatcgt gaacgtgagg agcctgggcc aggccatcga cttcatcaac cgtcgggaga      1560
     agcccctggc cctgtacgcc ttctccaaca gcagccaggt ggtcaagcgg gtcctggccc      1620
     agaccagcag cgggggcttc tgcgggaacg acggcttcat gcacttgacc ctggccagcc      1680
     tgcctttcgg aggagtgggc agcagcggga tgggcaatta ccacggcaag ttctccttcg      1740
     acaccttctc ccaccaccgc gcctgcctgc tgcgccgccc cgggctggag aagatctacg      1800
     ccatccgcta cccgccccac actccgcgca acctgagggt gctgctgatg gccatggaga      1860
     cccgcagctg cagctgcacc ctgctgtgag cccaccccag gcgcggggca ctgagcgtcc      1920
     ctcccacccc acgcccatga gtcctccgct gccgtggcca cctgaggctg gtggagacac      1980
     gacctgggat ccacgatgca gggggaaagg acctgccaag gccacagtcc agaccagtgc      2040
     ttgccctcct ctcacccagg gcttctcttt tcaggccctc agctgccccg caaccaggat      2100
     gggccaaggt gtgggcacgt gggagactgt gtaacctgct ctctggctcc cagggtggcc      2160
     acctatgtcc caggagagtc gggcagctgt gggcacttct cgggacctct ctttctgtgg      2220
     aggggtgcag aaggggtcct ggcatctggt ccatgccctg ctgtggacct gctgtgacct      2280
     gggttgttcc tgccctctct gagcttgtcc ccctctctgg tgtagagagg aggtgacaaa      2340
     caatatctcc tgagatcact gtgaggatta aaatttggaa cataattgct gactct          2396
//