EBI Dbfetch

ID   BT025380; SV 1; linear; mRNA; STD; MAM; 1570 BP.
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AC   BT025380;
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DT   16-MAY-2006 (Rel. 87, Created)
DT   27-NOV-2008 (Rel. 97, Last updated, Version 2)
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DE   Bos taurus ubiquitin-conjugating enzyme E2L 3 (UBE2L3), mRNA, incomplete 5'
DE   cds.
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KW   FLI_CDNA.
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OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
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RN   [1]
RP   1-1570
RX   DOI; 10.1101/gr.170101
RX   PUBMED; 11282978.
RA   Smith T.P., Grosse W.M., Freking B.A., Roberts A.J., Stone R.T., Casas E.,
RA   Wray J.E., White J., Cho J., Fahrenkrug S.C., Bennett G.L., Heaton M.P.,
RA   Laegreid W.W., Rohrer G.A., Chitko-McKown C.G., Pertea G., Holt I.,
RA   Karamycheva S., Liang F., Quackenbush J., Keele J.W.;
RT   "Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries
RT   and construction of a gene index for cattle";
RL   Genome Res. 11(4):626-630(2001).
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RN   [2]
RP   1-1570
RX   DOI; 10.1186/1471-2164-6-166
RX   PUBMED; 16305752.
RA   Harhay G.P., Sonstegard T.S., Keele J.W., Heaton M.P., Clawson M.L.,
RA   Snelling W.M., Wiedmann R.T., Van Tassell C.P., Smith T.P.;
RT   "Characterization of 954 bovine full-CDS cDNA sequences";
RL   BMC Genomics 6:166-166(2005).
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RN   [3]
RP   1-1570
RA   Harhay G.P., Sonstegard T.S., Van Tassell C.P., Clawson M.L., Heaton M.P.,
RA   Keele J.W., Snelling W.M., Weidmann R.T., Smith T.P.L.;
RT   "Sequencing and analysis of Bos taurus full-length insert cDNA clones";
RL   Unpublished.
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RN   [4]
RP   1-1570
RA   Harhay G.P., Sonstegard T.S., Van Tassell C.P., Clawson M.L., Heaton M.P.,
RA   Keele J.W., Snelling W.M., Weidmann R.T., Smith T.P.L.;
RT   ;
RL   Submitted (15-MAY-2006) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Genetic Research Unit, USDA-ARS U.S. Meat Animal Research Center,
RL   P.O. Box 166, Spur 18D, Clay Center, NE 68933
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DR   Ensembl-Gn; ENSBTAG00000019980; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000017332; Bos_taurus.
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CC   Contact: Gregory P. Harhay at harhay@email.marc.usda.gov.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1570
FT                   /organism="Bos taurus"
FT                   /lab_host="Escherichia coli DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="1BOV"
FT                   /clone="1BOV86N10; plate 86 row N column 10"
FT                   /tissue_type="pooled"
FT                   /note="Vector: pCMV SPORT6; Site_1: NotI; Site_2: SalI;
FT                   Library made from pooled tissue from lymph node, ovary,
FT                   fat, hypothalamus, and pituitary."
FT                   /db_xref="taxon:9913"
FT   gene            1..1570
FT                   /gene="UBE2L3"
FT                   /note="putative, similar to GeneID: 7332"
FT   CDS             <1..462
FT                   /codon_start=1
FT                   /gene="UBE2L3"
FT                   /product="ubiquitin-conjugating enzyme E2L 3"
FT                   /db_xref="GOA:Q3MHP1"
FT                   /db_xref="InterPro:IPR000608"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q3MHP1"
FT                   /protein_id="ABF57336.1"
FT                   /translation="AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPY
FT                   DKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVI
FT                   QSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPVD"
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SQ   Sequence 1570 BP; 389 A; 470 C; 374 G; 337 T; 0 other;
     gcggccagca ggaggctgat gaaggagctt gaagaaatcc gcaagtgtgg gatgaaaaac        60
     ttccgtaaca tccaggtcga tgaagctaat ttgctgactt ggcaagggct cattgttccc       120
     gacaaccctc cctatgataa gggggccttc agaatcgaaa tcaactttcc agcagagtac       180
     cccttcaaac caccgaagat cacgttcaaa acgaagatct accacccgaa catcgacgag       240
     aaggggcagg tgtgtctgcc tgtaattagt gctgaaaact ggaagccagc aaccaaaacc       300
     gaccaagtca tccagtccct catagcactg gtgaacgacc cccagccgga gcacccgctc       360
     cgggctgacc tagccgaaga atactctaag gaccgtaaaa aattctgtaa gaatgctgaa       420
     gaatttacaa agaaatatgg ggaaaagcga cctgtggact aaaatctgcc gcaatggatt       480
     ccagcgagtg tgagcagagg ccccgagcag tgcattcaga caccccacaa agcaggactc       540
     tggaaaattg acgcgtgcca ccgcctggcg tccgcttgtg gcagttacta actttctaca       600
     gttttcttaa tcagaagtgg tctaggtaac ctgtaaagaa aggattaaaa atttaagatg       660
     ttctagttct gctttctttg ttttaaaaat cactgcttca acctactttt aaaaaatggt       720
     gtttcttttc ctgtccaaat ttatccaaaa tcaatttaca tttaggccat aaggtttaaa       780
     aaaaaggcgg ggtggggggg gaggccctgg ttcctctctg ccctgcagct gccacgttct       840
     tgcatttcgt ctgattctca ctcccccact cccccaggcc cggccccgcc tccaggcccc       900
     tccgctccgc cctcggccgg cctggtgtgg gagttagtgc agactcctga ctgatttata       960
     gcctcctttg agaacaccga gaaacaagca aacctccact ccaaccccca accaaaaaaa      1020
     aaaaaaaaca acaaaccccg ttgaaagggg aggtccagct cttctgtaaa accctggcta      1080
     acgttacccc cgtgtcgctg gccagccggg atgaacctcc agcctcaggc ctgcggaggg      1140
     caggcccccg gcccgtcggc cggaggacag cgcgcctgtg ggaggaagtc ctcgccaggg      1200
     aggagctcct ccccgcatcc cttccggaag acgtcgggtc tccccgcaga caagtgctgg      1260
     cgtgtccacg cgcaggtccg cgctcgcttg tcgccgacga gtccaccgac gtggcttgga      1320
     gctcctcctc cgccttctga gtgcagccgc ccttccttag ctcgtctgac cctccgccga      1380
     tgccagtgtc ccgcaccagc ccgggccacc gcggccccca cccaggaaca ggacggcccc      1440
     cctccatcgg actctccacc ttcttggagt caggctccac gtgaagctcg ctcaataatc      1500
     ttgacatgtt ttatattgtt ttgaccgcct tcttttgtag aaataaaaat tgaccttaga      1560
     atttatcgtc                                                             1570
//