EBI Dbfetch

ID   BT021789; SV 1; linear; mRNA; STD; MAM; 1319 BP.
XX
AC   BT021789;
XX
DT   26-MAR-2005 (Rel. 83, Created)
DT   27-NOV-2008 (Rel. 97, Last updated, Version 3)
XX
DE   Bos taurus pyrroline-5-carboxylate reductase-like (PYCRL), mRNA, complete
DE   cds.
XX
KW   FLI_CDNA.
XX
OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-1319
RX   DOI; 10.1101/gr.170101
RX   PUBMED; 11282978.
RA   Smith T.P., Grosse W.M., Freking B.A., Roberts A.J., Stone R.T., Casas E.,
RA   Wray J.E., White J., Cho J., Fahrenkrug S.C., Bennett G.L., Heaton M.P.,
RA   Laegreid W.W., Rohrer G.A., Chitko-McKown C.G., Pertea G., Holt I.,
RA   Karamycheva S., Liang F., Quackenbush J., Keele J.W.;
RT   "Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries
RT   and construction of a gene index for cattle";
RL   Genome Res. 11(4):626-630(2001).
XX
RN   [2]
RP   1-1319
RX   DOI; 10.1186/1471-2164-6-166
RX   PUBMED; 16305752.
RA   Harhay G.P., Sonstegard T.S., Keele J.W., Heaton M.P., Clawson M.L.,
RA   Snelling W.M., Wiedmann R.T., Van Tassell C.P., Smith T.P.;
RT   "Characterization of 954 bovine full-CDS cDNA sequences";
RL   BMC Genomics 6:166-166(2005).
XX
RN   [3]
RP   1-1319
RA   Harhay G.P., Sonstegard T.S., Van Tassell C.P., Clawson M.L., Heaton M.P.,
RA   Keele J.W., Snelling W.M., Weidmann R.T., Smith T.P.L.;
RT   ;
RL   Submitted (17-MAR-2005) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Genetic Research Unit, USDA-ARS U.S. Meat Animal Research Center,
RL   P.O. Box 166, Spur 18D, Clay Center, NE 68933, USA
XX
DR   Ensembl-Gn; ENSBTAG00000016810; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000029356; Bos_taurus.
XX
CC   Contact: Gregory P. Harhay at harhay@email.marc.usda.gov.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1319
FT                   /organism="Bos taurus"
FT                   /lab_host="Escherichia coli DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="2BOV"
FT                   /clone="2BOV63F10; plate 63 row F column 10"
FT                   /tissue_type="pooled"
FT                   /note="Vector: pCMV SPORT6; Site_1: NotI; Site_2: SalI;
FT                   Library made from pooled tissue from testis, thymus,
FT                   semitendonosus muscle, longissimus muscle, pancreas,
FT                   adrenal, and endometrium."
FT                   /db_xref="taxon:9913"
FT   gene            1..1319
FT                   /gene="PYCRL"
FT                   /note="putative, similar to GeneID: 65263"
FT   CDS             10..936
FT                   /codon_start=1
FT                   /gene="PYCRL"
FT                   /product="pyrroline-5-carboxylate reductase-like"
FT                   /db_xref="GOA:Q58D08"
FT                   /db_xref="InterPro:IPR000304"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q58D08"
FT                   /protein_id="AAX46636.1"
FT                   /translation="MAAAAEESGWRRVGFVGAGRMAEAIAQGLIQAGKVEAEHVLASAP
FT                   SDRNLCRFRAMGCQTTHSNLEVLHSCSLVFFATKPHILPAVLVEVAPAVTAEHILVSVA
FT                   AGVSLSTLEKLLPPMARVLRVSPNLPCIVQEGAMVMARGCCAGSYEAQLLRSLLEACGQ
FT                   CEEVPEAQVDVHTGLSGSGVAFVCAFSEALAEGAIKMGMPSGLAHRIAAQTLLGTAKVL
FT                   LQKGQHPAQLRTDVCTPGGTTIYGLHVLEQGGLRATAMSAVEAATCRARELSRNPSPVV
FT                   AQVPSVLQALQGEGALAHREHSSVARS"
XX
SQ   Sequence 1319 BP; 220 A; 431 C; 422 G; 246 T; 0 other;
     agcggcgtga tggcggcggc ggcggaggag tccggctgga ggcgagtggg cttcgtgggc        60
     gcgggccgca tggcggaggc catcgcccag ggcctcatcc aagcaggaaa agtggaagct       120
     gagcacgtgc tggccagcgc gccctccgac aggaacctct gccgtttccg ggccatgggc       180
     tgccagacca cccactccaa cctggaggtg ctgcatagct gctccctcgt cttcttcgcc       240
     accaaacccc acatcctgcc ggctgtgctg gtggaggtgg ctcctgccgt cactgctgag       300
     cacatcttgg tgtctgtggc cgccggggtg tccctaagca ccctggagaa gctgctgccc       360
     ccgatggctc gggtgctcag ggtctcaccc aacctgccct gcatcgtcca ggagggtgcc       420
     atggtgatgg cgcggggctg ctgcgctggg agctatgagg cccagctcct gcggtccctg       480
     ctggaggcct gtgggcagtg cgaggaggtg cctgaggccc aggtggacgt ccataccggc       540
     ctcagcggca gcggcgtagc ctttgtgtgt gccttctccg aggccttggc cgaaggtgcc       600
     atcaaaatgg gcatgcccag tggcctggcc caccgcattg ctgcccagac cctgctgggg       660
     acggccaagg tgcttctgca gaaggggcag cacccagctc agctgcggac tgacgtgtgc       720
     acgccgggcg gcactaccat ctacgggctc catgtgctgg agcaaggcgg gctgcgggcc       780
     acagccatga gcgctgtgga ggctgccacc tgccgggcca gggagctcag caggaacccc       840
     tcccccgtgg tggctcaggt cccctctgtc ctgcaagccc tgcagggaga aggggccctg       900
     gcccacaggg aacacagcag tgtggcccgt tcctagaccc taagctcctg tggcctggcc       960
     tctgcaggat ttggttctga acatgtctgt gaagggacca acaagccagg aaaaccagaa      1020
     acgtggagcc tttgttgggg gaccgcccca tcccacacag gcccaagtgc tggagtccct      1080
     tcctgccacc tgccagctgc ggggcgtctg tgaacagggc tgatggacca ccggccgcct      1140
     gcactctgcc gcctggcctc aagcccctcc ctaagttcca gcctcagtgt cccactggcc      1200
     ctcagccagg cactgcttgt ctgaccccag cccttgtact agttagaagg gtcagccaga      1260
     gtccatttct tcaccttttt tttttaacct ttaaaatgga aataaagatg ctgtcctat       1319
//