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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BT021766; SV 1; linear; mRNA; STD; MAM; 1256 BP.
XX
AC   BT021766;
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DT   26-MAR-2005 (Rel. 83, Created)
DT   27-NOV-2008 (Rel. 97, Last updated, Version 3)
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DE   Bos taurus sorbitol dehydrogenase (SORD), mRNA, complete cds.
XX
KW   FLI_CDNA.
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OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-1256
RX   DOI; 10.1101/gr.170101
RX   PUBMED; 11282978.
RA   Smith T.P., Grosse W.M., Freking B.A., Roberts A.J., Stone R.T., Casas E.,
RA   Wray J.E., White J., Cho J., Fahrenkrug S.C., Bennett G.L., Heaton M.P.,
RA   Laegreid W.W., Rohrer G.A., Chitko-McKown C.G., Pertea G., Holt I.,
RA   Karamycheva S., Liang F., Quackenbush J., Keele J.W.;
RT   "Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries
RT   and construction of a gene index for cattle";
RL   Genome Res. 11(4):626-630(2001).
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RN   [2]
RP   1-1256
RX   DOI; 10.1186/1471-2164-6-166
RX   PUBMED; 16305752.
RA   Harhay G.P., Sonstegard T.S., Keele J.W., Heaton M.P., Clawson M.L.,
RA   Snelling W.M., Wiedmann R.T., Van Tassell C.P., Smith T.P.;
RT   "Characterization of 954 bovine full-CDS cDNA sequences";
RL   BMC Genomics 6:166-166(2005).
XX
RN   [3]
RP   1-1256
RA   Harhay G.P., Sonstegard T.S., Van Tassell C.P., Clawson M.L., Heaton M.P.,
RA   Keele J.W., Snelling W.M., Weidmann R.T., Smith T.P.L.;
RT   ;
RL   Submitted (17-MAR-2005) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Genetic Research Unit, USDA-ARS U.S. Meat Animal Research Center,
RL   P.O. Box 166, Spur 18D, Clay Center, NE 68933, USA
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DR   Ensembl-Gn; ENSBTAG00000025496; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000035849; Bos_taurus.
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CC   Contact: Gregory P. Harhay at harhay@email.marc.usda.gov.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1256
FT                   /organism="Bos taurus"
FT                   /lab_host="Escherichia coli DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="2BOV"
FT                   /clone="2BOV83B23; plate 83 row B column 23"
FT                   /tissue_type="pooled"
FT                   /note="Vector: pCMV SPORT6; Site_1: NotI; Site_2: SalI;
FT                   Library made from pooled tissue from testis, thymus,
FT                   semitendonosus muscle, longissimus muscle, pancreas,
FT                   adrenal, and endometrium."
FT                   /db_xref="taxon:9913"
FT   gene            1..1256
FT                   /gene="SORD"
FT                   /note="putative, similar to GeneID: 6652"
FT   CDS             65..1135
FT                   /codon_start=1
FT                   /gene="SORD"
FT                   /product="sorbitol dehydrogenase"
FT                   /db_xref="GOA:Q58D31"
FT                   /db_xref="InterPro:IPR002085"
FT                   /db_xref="InterPro:IPR002328"
FT                   /db_xref="InterPro:IPR011032"
FT                   /db_xref="InterPro:IPR013149"
FT                   /db_xref="InterPro:IPR013154"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q58D31"
FT                   /protein_id="AAX46613.1"
FT                   /translation="MAAAKPENLSLVVHGPGDLRLENYPIPEPGPNEVLLKMHSVGICG
FT                   SDVHYWQHGRIGDFVVKKPMVLGHEASGTVVKVGSLVRHLQPGDRVAIEPGAPRETDEF
FT                   CKIGRYNLSPTIFFCATPPDDGNLCRFYKHNANFCYKLPDNVTFEEGALIEPLSVGIHA
FT                   CRRAGVTLGNKVLVCGAGPIGLVSLLAAKAMGAAQVVVTDLSASRLSKAKEVGADFILQ
FT                   ISNESPQEIAKKVEGLLGSKPEVTIECTGVETSIQAGIYATHSGGTLVLVGLGSEMTSV
FT                   PLVHAATREVDIKGVFRYCNTWPMAISMLASKSVNVKPLVTHRFPLEKALEAFETSKKG
FT                   LGLKVMIKCDPNDQNP"
XX
SQ   Sequence 1256 BP; 296 A; 311 C; 360 G; 289 T; 0 other;
     ccaaccaagc cacctcacca gctgcggaca gcggccccga cccgagaggg agagagcgac        60
     agacatggcg gcggccaagc ccgagaacct ctccctggtg gtgcacggac ccggagactt       120
     gcgcttggaa aactatccta tccctgaacc aggcccaaat gaggtgcttc tgaagatgca       180
     ttctgttgga atttgtggct cagatgtcca ttactggcag catggtcgaa ttggagattt       240
     tgttgtgaaa aagccaatgg tgctggggca tgaagcttca ggaacagtcg taaaagtggg       300
     atcattggtc aggcacctac aaccaggtga tcgtgtcgcc atcgagcctg gtgctcctcg       360
     agaaactgat gagttctgca agattggccg atacaatctg tcacctacca tcttcttctg       420
     cgccacgccc cctgatgatg ggaacctctg ccggttctac aagcacaatg ctaacttctg       480
     ctacaagctt cctgacaatg tcacctttga ggaaggggcc ctgattgagc cactgtctgt       540
     ggggatccat gcctgccggc gagctggagt cacgctgggg aacaaggtcc ttgtgtgtgg       600
     agctgggcca attggactgg tcagtttgct tgcagccaag gcaatgggtg cagctcaagt       660
     ggtggtgact gatctgtcag cctctcggtt gtctaaagcc aaggaagtcg gggctgattt       720
     catcctccag atctccaacg agagccctca ggaaatagcc aagaaagtgg aaggcctgct       780
     gggcagcaag ccagaagtca caattgagtg cacaggggtg gagacctcca tccaagccgg       840
     catctacgcc actcattctg gtgggaccct ggtgttggtg gggctgggct ctgagatgac       900
     cagcgtgccc ctcgtgcacg cagccaccag ggaggtggac atcaagggcg tgtttcgata       960
     ctgcaataca tggccgatgg cgatttcaat gcttgcatcc aagtctgtga atgtaaagcc      1020
     cttggtcacc catcggtttc ctctggagaa agctctggag gcctttgaaa catccaaaaa      1080
     gggtttgggg ttgaaagtca tgatcaagtg tgaccccaac gaccagaatc catgatgtga      1140
     attgagctct gtcgttgtcc ccactctcag catgttggag ttcagtggtt gactgggagt      1200
     ggtggaagtt tcttttgagt agttagaata attaaaataa ttcattgtaa acagag          1256
//
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