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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BT021592; SV 1; linear; mRNA; STD; MAM; 1217 BP.
XX
AC   BT021592;
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DT   26-MAR-2005 (Rel. 83, Created)
DT   27-NOV-2008 (Rel. 97, Last updated, Version 3)
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DE   Bos taurus aminolevulinate, delta-, dehydratase (ALAD), mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-1217
RX   DOI; 10.1101/gr.170101
RX   PUBMED; 11282978.
RA   Smith T.P., Grosse W.M., Freking B.A., Roberts A.J., Stone R.T., Casas E.,
RA   Wray J.E., White J., Cho J., Fahrenkrug S.C., Bennett G.L., Heaton M.P.,
RA   Laegreid W.W., Rohrer G.A., Chitko-McKown C.G., Pertea G., Holt I.,
RA   Karamycheva S., Liang F., Quackenbush J., Keele J.W.;
RT   "Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries
RT   and construction of a gene index for cattle";
RL   Genome Res. 11(4):626-630(2001).
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RN   [2]
RP   1-1217
RX   DOI; 10.1186/1471-2164-6-166
RX   PUBMED; 16305752.
RA   Harhay G.P., Sonstegard T.S., Keele J.W., Heaton M.P., Clawson M.L.,
RA   Snelling W.M., Wiedmann R.T., Van Tassell C.P., Smith T.P.;
RT   "Characterization of 954 bovine full-CDS cDNA sequences";
RL   BMC Genomics 6:166-166(2005).
XX
RN   [3]
RP   1-1217
RA   Harhay G.P., Sonstegard T.S., Van Tassell C.P., Clawson M.L., Heaton M.P.,
RA   Keele J.W., Snelling W.M., Weidmann R.T., Smith T.P.L.;
RT   ;
RL   Submitted (17-MAR-2005) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Genetic Research Unit, USDA-ARS U.S. Meat Animal Research Center,
RL   P.O. Box 166, Spur 18D, Clay Center, NE 68933, USA
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DR   Ensembl-Gn; ENSBTAG00000000251; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000000315; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000044197; Bos_taurus.
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CC   Contact: Gregory P. Harhay at harhay@email.marc.usda.gov.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1217
FT                   /organism="Bos taurus"
FT                   /lab_host="Escherichia coli DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="1BOV"
FT                   /clone="1BOV86B21; plate 86 row B column 21"
FT                   /tissue_type="pooled"
FT                   /note="Vector: pCMV SPORT6; Site_1: NotI; Site_2: SalI;
FT                   Library made from pooled tissue from lymph node, ovary,
FT                   fat, hypothalamus, and pituitary."
FT                   /db_xref="taxon:9913"
FT   gene            1..1217
FT                   /gene="ALAD"
FT                   /note="putative, similar to GeneID: 210"
FT   CDS             141..1130
FT                   /codon_start=1
FT                   /gene="ALAD"
FT                   /product="delta-aminolevulinic acid dehydratase isoform b"
FT                   /db_xref="GOA:Q58DK5"
FT                   /db_xref="HSSP:1E51"
FT                   /db_xref="InterPro:IPR001731"
FT                   /db_xref="InterPro:IPR013785"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q58DK5"
FT                   /protein_id="AAX46439.1"
FT                   /translation="MHPQSVLHSGYFHPLLRNWQTAATSLSASNLIYPIFVTDVPDDKQ
FT                   PIASLPGVARYGVNRLEEMLKPLVEEGLRCVLIFGVPSRVPKDERGSAADSEDSPAIEA
FT                   IRLLRKNFPSLLVACDVCLCPYTSHGHCGLLSENGSFQAEESRQRLAEVALAYAKAGCQ
FT                   VVAPSDMMDGRVEAIKEALMAHGFGNRVSVMSYSAKFASCFYGPFRDAAQSSPAFGDRR
FT                   CYQLPPGARGLALRAVDRDVREGADLLMVKPGTPYLDIVREVKNKHPELPLAVYHVSGE
FT                   FAMLWHGAQAGAFDLKAAVLEVMTAFRRAGADVIITYYTPQLLQWLKE"
XX
SQ   Sequence 1217 BP; 249 A; 362 C; 361 G; 245 T; 0 other;
     ccacgcgtcc gaaagcgcgc gacagcggtg gcgggagcgg tgtctcggac tccttaggga        60
     ggcagagctg agcacacggc agaccccctg ggagacctca attccaacca gctgactctc       120
     ctgtgccccc cgtgcccacc atgcatcctc agtcagttct gcacagcggc tacttccacc       180
     cactgctccg gaactggcag acagccgcca ccagcctcag cgcctccaac cttatctacc       240
     ccatctttgt cacggatgtt cctgatgaca aacagcccat cgccagcctc ccaggagtgg       300
     ccaggtacgg tgtgaaccgg ctggaagaga tgctgaaacc cctggtggaa gagggcctgc       360
     gctgtgtcct gatctttggt gtccccagca gagttcccaa ggatgagcgg ggctctgcag       420
     ccgactccga ggactccccg gctatcgagg ccatccgtct gttgcgcaag aatttcccca       480
     gcctcctggt ggcctgtgac gtgtgcctat gtccctatac ctcccacggt cactgcgggc       540
     ttctgagtga gaacgggtca ttccaagctg aggagagccg ccagcggctg gcagaggtgg       600
     ctctggccta tgccaaggcg ggatgtcagg tggtggcccc gtcggacatg atggacggac       660
     gcgtggaggc catcaaggaa gctctgatgg cacatggatt cggcaacagg gtatcagtga       720
     tgagctatag tgccaaattc gcttcttgtt tctatggacc tttccgggac gcggctcagt       780
     cgagcccggc ttttggagat cgccgctgct accagctgcc acccggagca cgaggcctgg       840
     ccctccgcgc ggtggaccgg gatgttcggg agggagcaga cttgctcatg gtgaagccag       900
     gaacgcccta cctggacatc gtacgggagg taaagaacaa gcaccctgag ctccccctgg       960
     ctgtgtacca cgtttctgga gagtttgcca tgctgtggca cggggcccag gccggggcat      1020
     ttgatctcaa ggctgctgta ctagaggtca tgactgcttt ccgcagagca ggtgccgatg      1080
     tcatcattac ctactacaca cctcagctac tgcagtggct gaaggagtga tggagaaagt      1140
     gtaccagatt caagaactag aacttttcca ttcctgagcc ttggagaagt gaaaaccaaa      1200
     gtaaacgatg cttttag                                                     1217
//
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