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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BT021520; SV 1; linear; mRNA; STD; MAM; 1558 BP.
XX
AC   BT021520;
XX
DT   24-MAR-2005 (Rel. 83, Created)
DT   27-NOV-2008 (Rel. 97, Last updated, Version 3)
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DE   Bos taurus paraoxonase 2 (PON2), mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-1558
RX   DOI; 10.1007/s00335-001-2145-4
RX   PUBMED; 12140684.
RA   Sonstegard T.S., Capuco A.V., White J., Van Tassell C.P., Connor E.E.,
RA   Cho J., Sultana R., Shade L., Wray J.E., Wells K.D., Quackenbush J.;
RT   "Analysis of bovine mammary gland EST and functional annotation of the Bos
RT   taurus gene index";
RL   Mamm. Genome 13(7):373-379(2002).
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RN   [2]
RP   1-1558
RX   DOI; 10.1186/1471-2164-6-166
RX   PUBMED; 16305752.
RA   Harhay G.P., Sonstegard T.S., Keele J.W., Heaton M.P., Clawson M.L.,
RA   Snelling W.M., Wiedmann R.T., Van Tassell C.P., Smith T.P.;
RT   "Characterization of 954 bovine full-CDS cDNA sequences";
RL   BMC Genomics 6:166-166(2005).
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RN   [3]
RP   1-1558
RA   Harhay G.P., Sonstegard T.S., Van Tassell C.P., Clawson M.L., Heaton M.P.,
RA   Keele J.W., Snelling W.M., Weidmann R.T., Smith T.P.L.;
RT   ;
RL   Submitted (17-MAR-2005) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Genetic Research Unit, USDA-ARS U.S. Meat Animal Research Center,
RL   P.O. Box 166, Spur 18D, Clay Center, NE 68933, USA
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DR   Ensembl-Gn; ENSBTAG00000008361; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000011009; Bos_taurus.
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CC   Contact: Gregory P. Harhay at harhay@email.marc.usda.gov.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1558
FT                   /organism="Bos taurus"
FT                   /lab_host="Escherichia coli DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="5BOV"
FT                   /clone="5BOV28L14; plate 28 row L column 14"
FT                   /tissue_type="pooled"
FT                   /note="Vector: pCMV SPORT6; Site_1: NotI; Site_2: SalI;
FT                   Library made from pooled mRNA isolated from mammary tissues
FT                   at eight physiological, developmental, and disease states."
FT                   /db_xref="taxon:9913"
FT   gene            1..1558
FT                   /gene="PON2"
FT                   /note="putative, similar to GeneID: 5445"
FT   CDS             26..1090
FT                   /codon_start=1
FT                   /gene="PON2"
FT                   /product="paraoxonase 2"
FT                   /db_xref="GOA:Q58DS7"
FT                   /db_xref="InterPro:IPR008364"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q58DS7"
FT                   /protein_id="AAX46367.1"
FT                   /translation="MGRLLALSLLGIALALLGERLLALRNRLKASREVESVDLPNCHLI
FT                   KGIEAGAEDIDILPNGLAFFSVGLKCPGLHSFAPDKPGGILMMDLNEENPRALELRVSR
FT                   GFNLASFNPHGISTFIDSDDTVYLFVVNHPEFKNTVEIFKFEEEENSLLHLKTIKHELL
FT                   PSVNDIIAVGPEHFYATNDHYFSDPFLKYLETYLNLHWTNVVYYSPNEVKVVAEGFDSA
FT                   NGINISPDKKYIYVADILAHEIHVLEKHPNMNLTQLKVLKLDTLVDNLSIDPSSGDVLV
FT                   GCHPNGQKLFVYDPKNPPSSEVLRIQNILSEKPTVTTVYANNGSVLQGSSVASVYDKKL
FT                   LIGTLYHRALYCEL"
XX
SQ   Sequence 1558 BP; 466 A; 328 C; 322 G; 442 T; 0 other;
     agcgaggctg cgcggctccc gagccatggg gcggctgctg gcgctgagct tgctggggat        60
     cgcgctggcg ctgctgggcg agaggctcct ggcgctcagg aatcgactta aagcctccag       120
     agaagtggaa tctgtagacc ttcctaattg ccacctgatt aaaggaatcg aagccggcgc       180
     tgaagatatt gacatacttc ccaacggtct ggctttcttt agtgtgggtc taaaatgtcc       240
     aggcctccac agttttgcac cagataagcc tggaggaata ctaatgatgg atctaaatga       300
     agaaaaccca agggcactgg aattaagagt cagccgtgga tttaatttgg cttcatttaa       360
     tccacatggt atcagcactt tcatagacag tgatgacacc gtttatctct ttgttgtaaa       420
     ccacccagaa ttcaagaata cagtagaaat ttttaaattt gaagaggaag aaaattctct       480
     tttgcatcta aaaacaatca aacatgagct tcttccaagt gtgaatgata tcatagctgt       540
     tggaccagaa catttctatg ctaccaatga ccactatttc tctgatcctt tcttaaagta       600
     tttggaaaca tacttgaact tacactggac aaatgttgtt tactacagtc caaatgaagt       660
     taaagtggta gcagaaggat tcgattcagc aaatgggatc aatatttcac ctgataaaaa       720
     gtacatctat gttgctgata tattggctca tgaaattcat gttttggaaa agcaccctaa       780
     tatgaattta actcagttga aggtactcaa gttggatacc ctggtggata atttatctat       840
     tgacccttcc tcgggggacg tcttggtagg ctgtcacccc aacggccaga agctcttcgt       900
     gtatgacccg aagaatcctc cctcgtcaga ggttctccgc atccagaata ttttatctga       960
     gaagcctaca gtgactacag tttatgccaa caatggatct gttctccagg gaagttctgt      1020
     ggcctctgtg tatgacaaga agctgctcat aggcacttta taccacagag ccctatactg      1080
     tgagctctaa atggtccttc tggtatgcag gtgtgctagc atctcaacaa ctaattttct      1140
     atgaattgct aattctgagg gaatttaacc agcaacgttg acccccaaat gtgtgacata      1200
     catagtaaat ttattttggc aatgaaagaa ccccttcagt tcacatagca cttttaacat      1260
     aaaaagaaag tgaacagttt ttaaaaatgc caagtaaagg taagagaaga aagctgcttt      1320
     cagctaagtg aatacactct gcacaaaata agcctcatgt ctgcctttca actgccagag      1380
     catgaattcc actgaaacag ggtagattat atttccttaa aatgtgagtg acctcagctc      1440
     caccagtgtg accactatga ctcagaacta ctgatacata acatgttttg atgtcttata      1500
     cttacatctt tgtttactat taaagagttg gagttacagt aaagactcac taaaatcc        1558
//
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