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EBI DbfetchID BT021175; SV 1; linear; mRNA; STD; MAM; 3082 BP. XX AC BT021175; XX DT 11-MAR-2005 (Rel. 83, Created) DT 27-NOV-2008 (Rel. 97, Last updated, Version 5) XX DE Bos taurus dual specificity phosphatase 18 (DUSP18), mRNA, complete cds. XX KW FLI_CDNA. XX OS Bos taurus (cattle) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; OC Bovinae; Bos. XX RN [1] RP 1-3082 RX DOI; 10.1101/gr.170101 RX PUBMED; 11282978. RA Smith T.P., Grosse W.M., Freking B.A., Roberts A.J., Stone R.T., Casas E., RA Wray J.E., White J., Cho J., Fahrenkrug S.C., Bennett G.L., Heaton M.P., RA Laegreid W.W., Rohrer G.A., Chitko-McKown C.G., Pertea G., Holt I., RA Karamycheva S., Liang F., Quackenbush J., Keele J.W.; RT "Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries RT and construction of a gene index for cattle"; RL Genome Res. 11(4):626-630(2001). XX RN [2] RP 1-3082 RX DOI; 10.1186/1471-2164-6-166 RX PUBMED; 16305752. RA Harhay G.P., Sonstegard T.S., Keele J.W., Heaton M.P., Clawson M.L., RA Snelling W.M., Wiedmann R.T., Van Tassell C.P., Smith T.P.; RT "Characterization of 954 bovine full-CDS cDNA sequences"; RL BMC Genomics 6:166-166(2005). XX RN [3] RP 1-3082 RA Harhay G.P., Sonstegard T.S., Van Tassell C.P., Clawson M.L., Heaton M.P., RA Keele J.W., Snelling W.M., Weidmann R.T., Smith T.P.L.; RT ; RL Submitted (09-MAR-2005) to the EMBL/GenBank/DDBJ databases. RL Molecular Genetic Research Unit, USDA-ARS U.S. Meat Animal Research Center, RL P.O. Box 166, Spur 18D, Clay Center, NE 68933, USA XX DR Ensembl-Gn; ENSBTAG00000017459; Bos_taurus. DR Ensembl-Tr; ENSBTAT00000023205; Bos_taurus. XX CC Contact: Gregory P. Harhay at harhay@email.marc.usda.gov. XX FH Key Location/Qualifiers FH FT source 1..3082 FT /organism="Bos taurus" FT /lab_host="Escherichia coli DH10B" FT /mol_type="mRNA" FT /clone_lib="3BOV" FT /clone="3BOV78O1; plate 78 row O column 1" FT /tissue_type="pooled" FT /note="Vector: pCMV SPORT6; Site_1: NotI; Site_2: SalI; FT Library made from pooled tissue from marrow, alveolar FT macrophage, ovary, fetal semitendonosus muscle, and fetal FT longissimus muscle." FT /db_xref="taxon:9913" FT gene 1..3082 FT /gene="DUSP18" FT /note="putative, similar to GeneID: 150290" FT CDS 400..966 FT /codon_start=1 FT /gene="DUSP18" FT /product="dual specificity phosphatase 18" FT /db_xref="GOA:Q5BIP9" FT /db_xref="InterPro:IPR000340" FT /db_xref="InterPro:IPR000387" FT /db_xref="InterPro:IPR016130" FT /db_xref="InterPro:IPR020417" FT /db_xref="InterPro:IPR020420" FT /db_xref="InterPro:IPR020422" FT /db_xref="UniProtKB/Swiss-Prot:Q5BIP9" FT /protein_id="AAX31357.1" FT /translation="MTASPCAFPVQFRQPSVSGLSQITSSLYISSGVAANNRLMLSSNR FT ISTVINVSVEVVNALYEDIHYVQVPVADTPTSRLCDFFDPIADHIHSVEMKQGRTLLHC FT AAGVSRSAALCLAYLMKYHAMSLLDAHTWTKSCRPIIRPNNGFWEQLIHYEFQLFGRNT FT VHMVSSPVGMIPDIYEKEVRQMIPL" FT repeat_region 1293..1348 FT /rpt_unit_seq="ctaa" FT repeat_region 1598..1627 FT /note="AT_rich" FT repeat_region 1757..1907 FT /rpt_family="MIRb" FT repeat_region 2691..2774 FT /rpt_family="L1MB7" FT repeat_region 2775..3081 FT /rpt_family="L1MC3" XX SQ Sequence 3082 BP; 675 A; 887 C; 776 G; 744 T; 0 other; acgggctggg cgagaactag tgggctgcgg cacgcagagc ccggacccta cttttcgact 60 aggactgctc gggttcccgc gtgatcgcag ggcggtggct ggtgagtccg ggcctggcag 120 ctccaggacg gggaaaacga ggccggggtt tctccggaga cccggcacgg cgcatctctt 180 tctgcaacaa gggaccattg ctatggaaac cggagcccct ggccggtggg gacagtggct 240 cctgggtcgt gaccgatctt ctctgacccg gagacgctcg cccaaggttg cttcctgaat 300 gcacttgccc tcccgcccgc gagagagagt tttccatgga cacagcctag caggaagagg 360 gcgcctttat gtctcacggg ccgctgaccc actggcctga tgacagcatc cccgtgtgcc 420 ttcccagttc agttccggca gccctcggtc agtggcctct cacagatcac cagtagcctg 480 tatatcagca gcggggtggc cgccaacaac aggctcatgc tctccagcaa ccgcatcagc 540 acggtcatca atgtctcagt ggaggtggtg aacgccttgt acgaggacat tcactatgtg 600 caggtgcccg tggccgacac gcccacctcg cggctctgtg acttcttcga ccccatcgca 660 gaccacatcc acagcgtgga gatgaagcag ggccgcaccc tgctgcactg cgccgccggc 720 gtcagccgct cggctgccct ctgcctcgcc tatctcatga agtaccacgc catgtccctg 780 ctggacgccc acacgtggac caagtcctgc cggcccatca tccggcccaa caacggcttt 840 tgggagcagc tcatccacta tgagttccag ctatttggca ggaataccgt gcacatggtc 900 agctcccccg tgggcatgat ccctgacatc tacgagaagg aggtccgtca gatgattcca 960 ctctgagcca ttccgccagc acgtgcccca gggtcactga tcttccacca agatctgtgc 1020 tcagacaccc tccttttatc aatacaggaa aaccaggtga caccttttat aagggcaagg 1080 aaaaaggaag cgtgctgtaa gctcttaatc ttatcattca catctttaaa gagtcagctt 1140 actacatgta agatggtgaa gataagtttt ctccccagtg agtgacaggt catggctgct 1200 gaccagaggg gagggtgaac caggtggtgc ccaggtcaag tggaccagcg cccagtgcac 1260 gtggcaagtc tggaatcctg cagtcttccc catgaccaac taactaactg aataagtcta 1320 attaactaac aataagataa ctaactgaat gagtctttca caattccacc tcattctttc 1380 gaacccaaag ccagccttaa gcatcatggc acctcctgtg cttctcacgg tttaggtgcc 1440 aacctactgg atgagtagcc ttcaagcagt gttccagaaa ctctgggagc cccaaggcaa 1500 ccctgctttc acctttagcc accattggcc aagtctggtt ttctggatgg attggactta 1560 cacataagat agttttcaaa ggatgcattc tgttgtgtta aatttttttt aacatttttt 1620 tttttttgag cactgctcta cacggcaagc tcttctccag cttttgatga aaagtggcat 1680 tggtctctgt ttcggggcac gtgttggaga gcaggcctga catcaggcct cagcccagaa 1740 ggctggagct gtgaaccgaa acgcagcctt gtcacctcct gctcatgtga cctgtggcct 1800 catggagcct gagtttcctc atcccagtga tgacagccct ttcctcttag ggtcgtcgtg 1860 aggatcagtg cttccttagc gcagtgcccc agcgcgtggt aggtgcttgt gtgaccagcc 1920 actctccgca cgaatgatgc cctggcccca ctggcccggg tctgagagtc atcctcacaa 1980 cagcagctcc ctgcatctgt gtacagcccc ttattgctca gaaagtgctc tttccaaaag 2040 ttgtcctgca tggggaaaaa acggtttcag tcttcgcgca cccctgcctt gcaggaggcc 2100 tagatctcag agccttttca ggtttcccac tgtgtttagc ccccatgtca cctgggagtc 2160 ctagaacaag gagcacacat ccggcttctc ccaaagggcc ttgtttagat caccggccac 2220 gagagccagc cctggcctag ctggctgctg gggtccacgg gggcgtgtgc caaagggatg 2280 aataagcaaa cctcacctga aggtcctgaa atccagggtg ggtccaaggt gtgcaaggat 2340 ctgggtcaag accagctatt ctaacccaga ggttttcaaa ccgaaggaca actgctccat 2400 ctgggtccag agcccggtgg aggccaaaca cgccttctct ccacgcccac ccctcccctg 2460 ctttcacaaa gagcctgccc acaggtgtca ttttagggtc gggggagacc cgtctcattt 2520 tctcgaagga taaacagacc cacaaacacc agagctggtg tggcgaggcc cccacaaagc 2580 ggaagaaacc catctgaaag aaaccaaggt ggaaaatttc gttgaaagca tttttttttt 2640 ttaagagaag tttatttggg tctattttgt ttcaggttct aaaatggtta aatcaacata 2700 ccataaaagt aactgtgtcc tgtgtaaggt tctatgtgtt ttaacacgtt tgtgtcacta 2760 cctccacaat caggatgcag agcagttccg tcccctcaga attcccttat gctggccctt 2820 tgccccaccc cagcctctgg caaacccgtc tctgttctcc atccgtacag atttgccttt 2880 tccagaagct cacatacata ggtcatagcg ggtgtagcct ctggagacgc ttctttgagt 2940 gtgtctgagg ctcacacgtg ttgcctttcg tggccgtgtg cttttccttt gcacgggtgt 3000 gccaggtgtc ttactttcac ctactgaagg atatttggct tgtttccagt ttttggcaat 3060 tttgaataaa actgctacag at 3082 // |
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