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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BT021084; SV 1; linear; mRNA; STD; MAM; 1399 BP.
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AC   BT021084;
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DT   17-FEB-2005 (Rel. 82, Created)
DT   27-NOV-2008 (Rel. 97, Last updated, Version 4)
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DE   Bos taurus endoplasmic reticulum thioredoxin superfamily member, 18 kDa
DE   (TLP19), mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
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RN   [1]
RP   1-1399
RX   DOI; 10.1007/s00335-001-2145-4
RX   PUBMED; 12140684.
RA   Sonstegard T.S., Capuco A.V., White J., Van Tassell C.P., Connor E.E.,
RA   Cho J., Sultana R., Shade L., Wray J.E., Wells K.D., Quackenbush J.;
RT   "Analysis of bovine mammary gland EST and functional annotation of the Bos
RT   taurus gene index";
RL   Mamm. Genome 13(7):373-379(2002).
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RN   [2]
RP   1-1399
RX   DOI; 10.1186/1471-2164-6-166
RX   PUBMED; 16305752.
RA   Harhay G.P., Sonstegard T.S., Keele J.W., Heaton M.P., Clawson M.L.,
RA   Snelling W.M., Wiedmann R.T., Van Tassell C.P., Smith T.P.;
RT   "Characterization of 954 bovine full-CDS cDNA sequences";
RL   BMC Genomics 6:166-166(2005).
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RN   [3]
RP   1-1399
RA   Harhay G.P., Sonstegard T.S., Clawson M.L., Heaton M.P., Keele J.W.,
RA   Snelling W.M., Weidmann R.T., Smith T.P.L.;
RT   ;
RL   Submitted (16-FEB-2005) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Genetic Research Unit, USDA-ARS U.S. Meat Animal Research Center,
RL   P.O. Box 166, Spur 18D, Clay Center, NE 68933, USA
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DR   Ensembl-Gn; ENSBTAG00000011024; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000014645; Bos_taurus.
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CC   Contact: Gregory P. Harhay at harhay@email.marc.usda.gov.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1399
FT                   /organism="Bos taurus"
FT                   /lab_host="Escherichia coli DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="5BOV"
FT                   /clone="5BOV98K3; plate 98 row K column 3"
FT                   /tissue_type="pooled"
FT                   /note="Vector: pCMV SPORT6; Site_1: NotI; Site_2: SalI;
FT                   Library made from pooled mRNA isolated from mammary tissues
FT                   at eight physiological, developmental, and disease states."
FT                   /db_xref="taxon:9913"
FT   gene            1..1399
FT                   /gene="TLP19"
FT                   /note="putative, similar to GeneID: 51060"
FT   CDS             108..626
FT                   /codon_start=1
FT                   /gene="TLP19"
FT                   /product="endoplasmic reticulum thioredoxin superfamily
FT                   member, 18 kDa"
FT                   /db_xref="GOA:Q5E936"
FT                   /db_xref="InterPro:IPR012335"
FT                   /db_xref="InterPro:IPR012336"
FT                   /db_xref="InterPro:IPR017936"
FT                   /db_xref="InterPro:IPR017937"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q5E936"
FT                   /protein_id="AAX09101.1"
FT                   /translation="MELRPRLGATCLLGFSFLLLVTSSHGPNGLGKGFGDHIHWRTLED
FT                   GKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDED
FT                   FSPDGGYIPRILFLDPSGKVRPEIINENGNPSYKYFYISAEQVVQGMKEAQERLTGDAF
FT                   REKHLEDEL"
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SQ   Sequence 1399 BP; 365 A; 326 C; 320 G; 388 T; 0 other;
     acgcgaacgg ctgagctgat ccgcacttgg gaaaccgcac gaaccttctc ctaggacttc        60
     gtcggcccta cgtctgctca gcccagtggc tccgcgcacc tgccaccatg gagctgcggc       120
     ctcgtctcgg ggccacctgt ttgctgggct tcagtttcct gctccttgtc acctcttctc       180
     atggacctaa tgggcttgga aagggttttg gagatcacat tcattggagg acgctagaag       240
     atgggaagaa ggaagcagct gccagtggat tgcccctgat ggtgattatc cataagtcct       300
     ggtgtggagc ttgcaaagct ttaaagccca aatttgcaga atctacagaa atttcagaac       360
     tttcccataa ttttgttatg gtaaatcttg aggatgaaga ggagcccaaa gatgaagatt       420
     tcagccccga tgggggttat attccacgaa tcctgttcct ggatcccagt ggcaaagtgc       480
     gtcctgaaat catcaatgag aatggaaacc ccagctacaa gtatttctac atcagtgctg       540
     agcaagttgt tcaggggatg aaggaagctc aggaaaggct gacgggtgat gccttcagag       600
     agaaacatct ggaagatgag ttgtaacatg aatgcacccc ttctttcctc aaagttattg       660
     ttctggaaga aagcagcagg gaagggaata ctgaggaatc agaacaattg aatggatcgg       720
     aaaaccttgc tccttcccac atgggaaggg cccctctcac tgttagaaga gttctgctgc       780
     cagaaactgg tctccatgtt tgtgatccag cagagtgtgg cagacttcct ggtcctgtcc       840
     cctctcacct aaatatctct ttgtcattga aggtaaagaa tgacaccttt tgacataaaa       900
     cttgagccat ttggagattt actcctcaca ctgcagtatt tgaatctttc catttcctcc       960
     tgcttaactc accttggtgg tgaaaagaga ccagaagcat cttttctata atgttaaaaa      1020
     ttgcggaaag aacttatcat ttaagacaaa aattctaaat gtaaagccgt aattctgccc      1080
     caccaaggag ctcagcctgt ctcttctttt tctcctggga ataatcttgg gcttcttcct      1140
     gaatgcctgc aacttccttc ctcttctctg gcttggcttc cctgtctgcg cgcatgtgtg      1200
     tgcaggaatg gctgtgtgct ctggactggc cccagctgga agcatgcttt ctttgccccc      1260
     gttaactgtt gaagaaacct tctagcccta gatggagcca tttttgtcaa gtcgtcaact      1320
     gtatttttgt actgggatta acaacaaaaa aagaaaaaat attaattgtt ccattaaact      1380
     ttaataaaac tttaaaagg                                                   1399
//
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