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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BT021022; SV 1; linear; mRNA; STD; MAM; 1363 BP.
XX
AC   BT021022;
XX
DT   17-FEB-2005 (Rel. 82, Created)
DT   27-NOV-2008 (Rel. 97, Last updated, Version 4)
XX
DE   Bos taurus cathepsin L2 (CTSL2), mRNA, complete cds.
XX
KW   FLI_CDNA.
XX
OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-1363
RX   DOI; 10.1007/s00335-001-2145-4
RX   PUBMED; 12140684.
RA   Sonstegard T.S., Capuco A.V., White J., Van Tassell C.P., Connor E.E.,
RA   Cho J., Sultana R., Shade L., Wray J.E., Wells K.D., Quackenbush J.;
RT   "Analysis of bovine mammary gland EST and functional annotation of the Bos
RT   taurus gene index";
RL   Mamm. Genome 13(7):373-379(2002).
XX
RN   [2]
RP   1-1363
RX   DOI; 10.1186/1471-2164-6-166
RX   PUBMED; 16305752.
RA   Harhay G.P., Sonstegard T.S., Keele J.W., Heaton M.P., Clawson M.L.,
RA   Snelling W.M., Wiedmann R.T., Van Tassell C.P., Smith T.P.;
RT   "Characterization of 954 bovine full-CDS cDNA sequences";
RL   BMC Genomics 6:166-166(2005).
XX
RN   [3]
RP   1-1363
RA   Harhay G.P., Sonstegard T.S., Clawson M.L., Heaton M.P., Keele J.W.,
RA   Snelling W.M., Weidmann R.T., Smith T.P.L.;
RT   ;
RL   Submitted (16-FEB-2005) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Genetic Research Unit, USDA-ARS U.S. Meat Animal Research Center,
RL   P.O. Box 166, Spur 18D, Clay Center, NE 68933, USA
XX
DR   Ensembl-Gn; ENSBTAG00000017077; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000022710; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000036427; Bos_taurus.
XX
CC   Contact: Gregory P. Harhay at harhay@email.marc.usda.gov.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1363
FT                   /organism="Bos taurus"
FT                   /lab_host="Escherichia coli DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="5BOV"
FT                   /clone="5BOV144F22; plate 144 row F column 22"
FT                   /tissue_type="pooled"
FT                   /note="Vector: pCMV SPORT6; Site_1: NotI; Site_2: SalI;
FT                   Library made from pooled mRNA isolated from mammary tissues
FT                   at eight physiological, developmental, and disease states."
FT                   /db_xref="taxon:9913"
FT   gene            1..1363
FT                   /gene="CTSL2"
FT                   /note="putative, similar to GeneID: 1515"
FT   CDS             64..1068
FT                   /codon_start=1
FT                   /gene="CTSL2"
FT                   /product="cathepsin L2 preproprotein"
FT                   /db_xref="GOA:Q5E998"
FT                   /db_xref="InterPro:IPR000169"
FT                   /db_xref="InterPro:IPR000668"
FT                   /db_xref="InterPro:IPR013128"
FT                   /db_xref="InterPro:IPR013201"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q5E998"
FT                   /protein_id="AAX09039.1"
FT                   /translation="MNPSFFLTVLCLGVASAAPKLDPNLDAHWHQWKATHRRLYGMNEE
FT                   EWRRAVWEKNKKIIDLHNQEYSEGKHGFRMAMNAFGDMTNEEFRQVMNGFQNQKHKKGK
FT                   LFHEPLLVDVPKSVDWTKKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSE
FT                   QNLVDCSRAQGNQGCNGGLMDNAFQYIKDNGCLDSEESYPYLATDTNSCNYKPECSAAN
FT                   DTGFVDIPQREKALMKAVATVGPISVAIDAGHTSFQFYKSGIYYDPDCSSKDLDHGVLV
FT                   VGYGFEGTDSNNNKFWIVKNSWGPEWGWNGYVKMAKDQNNHCGIATAASYPTV"
XX
SQ   Sequence 1363 BP; 403 A; 254 C; 329 G; 377 T; 0 other;
     agagataaac gtgcgaccgt ggagtgcgcc tgcgcagctt tggaagccgc aggtttttga        60
     aatatgaatc cttcattctt cctgactgtc ctttgcttgg gagtagcatc agctgctccc       120
     aaacttgatc caaatttaga tgcacattgg caccagtgga aggcaactca caggaggtta       180
     tatggcatga atgaagaaga atggaggaga gcagtgtggg agaagaataa gaaaataatt       240
     gacctgcata atcaggaata cagcgaaggg aaacatggct tccgcatggc aatgaatgcc       300
     tttggtgaca tgaccaatga agaatttagg caggtgatga atggttttca aaatcagaag       360
     cataagaagg ggaaactgtt tcatgaacct ctccttgttg acgtccccaa atctgtggat       420
     tggactaaga aaggctatgt aactcctgtg aagaatcagg gtcagtgtgg ttcttgttgg       480
     gcgtttagtg ccactggtgc tcttgaagga cagatgttcc ggaaaactgg caaacttgtt       540
     tcactgagtg agcaaaacct ggtggactgc tctcgggctc aaggcaatca gggttgcaat       600
     ggtggcctaa tggataatgc cttccagtat attaaggaca acggatgcct ggactcagag       660
     gaatcttatc catatcttgc aacggacaca aatagctgta actataagcc tgagtgttct       720
     gccgccaatg acactggctt cgttgacatc cctcagcggg agaaggccct tatgaaggca       780
     gtggcaactg tgggccccat ctctgttgct attgatgcag gccatacatc cttccagttc       840
     tataaatcag gtatttatta tgatccagat tgcagcagca aagacctgga tcatggtgtt       900
     ttggtggttg gctatggctt tgaaggaaca gattcaaata acaataaatt ctggattgtc       960
     aagaacagtt ggggtccaga atggggctgg aatggctacg tgaaaatggc caaagaccag      1020
     aacaaccatt gtggaattgc cacagcagcc agctatccaa ctgtttgagc tgatggatgg      1080
     tgatggtaga ggacttgagg acagcctatc tggaggaatt ttatcttaaa actgaccaaa      1140
     cccttactgt ataagatcat acacttgaat cattgaggat ccaagttgtg atttgaatgc      1200
     tgtgacattt ttataagggt aaaatgttac cactacttta attactatta taaatagctt      1260
     tataatgttg aagactcatt gcttaactct aagacttttg aattttcatt ttttaaaagg      1320
     atatataaaa ctctgccttt tacaataaat tttaattcaa tac                        1363
//
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