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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   BT021007; SV 1; linear; mRNA; STD; MAM; 1153 BP.
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AC   BT021007;
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DT   17-FEB-2005 (Rel. 82, Created)
DT   27-NOV-2008 (Rel. 97, Last updated, Version 4)
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DE   Bos taurus Rab geranylgeranyltransferase, beta subunit (RABGGTB), mRNA,
DE   complete cds.
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KW   FLI_CDNA.
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OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
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RN   [1]
RP   1-1153
RX   DOI; 10.1007/s00335-001-2145-4
RX   PUBMED; 12140684.
RA   Sonstegard T.S., Capuco A.V., White J., Van Tassell C.P., Connor E.E.,
RA   Cho J., Sultana R., Shade L., Wray J.E., Wells K.D., Quackenbush J.;
RT   "Analysis of bovine mammary gland EST and functional annotation of the Bos
RT   taurus gene index";
RL   Mamm. Genome 13(7):373-379(2002).
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RN   [2]
RP   1-1153
RX   DOI; 10.1186/1471-2164-6-166
RX   PUBMED; 16305752.
RA   Harhay G.P., Sonstegard T.S., Keele J.W., Heaton M.P., Clawson M.L.,
RA   Snelling W.M., Wiedmann R.T., Van Tassell C.P., Smith T.P.;
RT   "Characterization of 954 bovine full-CDS cDNA sequences";
RL   BMC Genomics 6:166-166(2005).
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RN   [3]
RP   1-1153
RA   Harhay G.P., Sonstegard T.S., Clawson M.L., Heaton M.P., Keele J.W.,
RA   Snelling W.M., Weidmann R.T., Smith T.P.L.;
RT   ;
RL   Submitted (16-FEB-2005) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Genetic Research Unit, USDA-ARS U.S. Meat Animal Research Center,
RL   P.O. Box 166, Spur 18D, Clay Center, NE 68933, USA
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DR   Ensembl-Gn; ENSBTAG00000018447; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000024551; Bos_taurus.
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CC   Contact: Gregory P. Harhay at harhay@email.marc.usda.gov.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1153
FT                   /organism="Bos taurus"
FT                   /lab_host="Escherichia coli DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="5BOV"
FT                   /clone="5BOV135K16; plate 135 row K column 16"
FT                   /tissue_type="pooled"
FT                   /note="Vector: pCMV SPORT6; Site_1: NotI; Site_2: SalI;
FT                   Library made from pooled mRNA isolated from mammary tissues
FT                   at eight physiological, developmental, and disease states."
FT                   /db_xref="taxon:9913"
FT   gene            1..1153
FT                   /gene="RABGGTB"
FT                   /note="putative, similar to GeneID: 5876"
FT   CDS             3..998
FT                   /codon_start=1
FT                   /gene="RABGGTB"
FT                   /product="Rab geranylgeranyltransferase, beta subunit"
FT                   /db_xref="GOA:Q5E9B3"
FT                   /db_xref="InterPro:IPR001330"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q5E9B3"
FT                   /protein_id="AAX09024.1"
FT                   /translation="MGTPQKDVIIKSDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYL
FT                   RMSGIYWGLTVMDLMGQLHRMNREEILTFIKSCQHECGGISASIGHDPHLLYTLSAVQI
FT                   LTLYDSINVIDINKVVEYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAIN
FT                   VEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCER
FT                   QLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADR
FT                   PGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMPEEVLRRVNVQPELVS"
FT   repeat_region   1118..1145
FT                   /note="AT_rich"
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SQ   Sequence 1153 BP; 331 A; 170 C; 270 G; 382 T; 0 other;
     tcatgggtac accgcagaaa gatgttatca ttaagtcaga tgcacctgac accctgttac        60
     tggagaagca tgctgattat attgcatcct atggctcaaa gaaagatgac tacgaatatt       120
     gcatgtctga atatttgaga atgagtggca tctattgggg tctgaccgta atggatctca       180
     tgggacaact acatcgtatg aatagagaag aaattctgac gtttattaag tcttgtcaac       240
     acgagtgtgg tggaataagt gctagtattg gacatgatcc tcatcttttg tatactctta       300
     gtgctgttca gatacttact ctctatgata gtattaatgt tattgacata aataaagttg       360
     tggaatatgt tcagagtcta cagaaagaag atggttcttt tgctggagat atctggggag       420
     aaattgatac aagattctct ttttgtgcag tggcaacttt ggcactattg gggaagttgg       480
     atgctattaa tgtggaaaag gcaatcgaat ttgttttatc atgtatgaac tttgatggtg       540
     gatttggttg cagaccaggt tctgaatccc atgctgggca gatctattgt tgcacaggat       600
     tcttggctat tactagtcag ttgcaccaag taaattctga tttactcggt tggtggcttt       660
     gtgaacgaca gcttccatca ggtggactca atggaaggcc agagaagtta ccagatgtat       720
     gctattcatg gtgggtgttg gcttccctaa agataattgg aaggcttcat tggattgata       780
     gagaaaaact ccgcagtttc atcctagcat gtcaagatga agaaacagga ggatttgcag       840
     ataggccagg agatatggta gatccttttc atactctgtt tggaattgct ggattgtcac       900
     ttttgggaga agaacagatt aaacctgtta gccctgtttt ttgcatgcct gaagaagtac       960
     ttcggagagt gaatgttcag cctgaactag tgagctagat tagatccctt gatggagaag      1020
     ttggttaata tagtttttat tgtgttttaa catttcagta gttgaagtgc ttaacaaact      1080
     taataactac cgtgttaata tttgtacatg aattgtgtta attttaataa attatattaa      1140
     ttatacatat tgt                                                         1153
//
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