EBI Dbfetch

ID   BT020999; SV 1; linear; mRNA; STD; MAM; 1761 BP.
XX
AC   BT020999;
XX
DT   17-FEB-2005 (Rel. 82, Created)
DT   27-NOV-2008 (Rel. 97, Last updated, Version 4)
XX
DE   Bos taurus caspase 4, apoptosis-related cysteine protease (CASP4), mRNA,
DE   complete cds.
XX
KW   FLI_CDNA.
XX
OS   Bos taurus (cattle)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae;
OC   Bovinae; Bos.
XX
RN   [1]
RP   1-1761
RX   DOI; 10.1007/s00335-001-2145-4
RX   PUBMED; 12140684.
RA   Sonstegard T.S., Capuco A.V., White J., Van Tassell C.P., Connor E.E.,
RA   Cho J., Sultana R., Shade L., Wray J.E., Wells K.D., Quackenbush J.;
RT   "Analysis of bovine mammary gland EST and functional annotation of the Bos
RT   taurus gene index";
RL   Mamm. Genome 13(7):373-379(2002).
XX
RN   [2]
RP   1-1761
RX   DOI; 10.1186/1471-2164-6-166
RX   PUBMED; 16305752.
RA   Harhay G.P., Sonstegard T.S., Keele J.W., Heaton M.P., Clawson M.L.,
RA   Snelling W.M., Wiedmann R.T., Van Tassell C.P., Smith T.P.;
RT   "Characterization of 954 bovine full-CDS cDNA sequences";
RL   BMC Genomics 6:166-166(2005).
XX
RN   [3]
RP   1-1761
RA   Harhay G.P., Sonstegard T.S., Clawson M.L., Heaton M.P., Keele J.W.,
RA   Snelling W.M., Weidmann R.T., Smith T.P.L.;
RT   ;
RL   Submitted (16-FEB-2005) to the EMBL/GenBank/DDBJ databases.
RL   Molecular Genetic Research Unit, USDA-ARS U.S. Meat Animal Research Center,
RL   P.O. Box 166, Spur 18D, Clay Center, NE 68933, USA
XX
DR   Ensembl-Gn; ENSBTAG00000020884; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000027820; Bos_taurus.
DR   Ensembl-Tr; ENSBTAT00000052006; Bos_taurus.
XX
CC   Contact: Gregory P. Harhay at harhay@email.marc.usda.gov.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1761
FT                   /organism="Bos taurus"
FT                   /lab_host="Escherichia coli DH10B"
FT                   /mol_type="mRNA"
FT                   /clone_lib="5BOV"
FT                   /clone="5BOV134A3; plate 134 row A column 3"
FT                   /tissue_type="pooled"
FT                   /note="Vector: pCMV SPORT6; Site_1: NotI; Site_2: SalI;
FT                   Library made from pooled mRNA isolated from mammary tissues
FT                   at eight physiological, developmental, and disease states."
FT                   /db_xref="taxon:9913"
FT   gene            1..1761
FT                   /gene="CASP4"
FT                   /note="putative, similar to GeneID: 837"
FT   CDS             42..1175
FT                   /codon_start=1
FT                   /gene="CASP4"
FT                   /product="caspase 4, isoform alpha, small subunit"
FT                   /db_xref="GOA:Q5E9C1"
FT                   /db_xref="InterPro:IPR001309"
FT                   /db_xref="InterPro:IPR001315"
FT                   /db_xref="InterPro:IPR002138"
FT                   /db_xref="InterPro:IPR002398"
FT                   /db_xref="InterPro:IPR011029"
FT                   /db_xref="InterPro:IPR011600"
FT                   /db_xref="InterPro:IPR015917"
FT                   /db_xref="InterPro:IPR016129"
FT                   /db_xref="InterPro:IPR017350"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q5E9C1"
FT                   /protein_id="AAX09016.1"
FT                   /translation="MAEDKHNKNPLKMLESLGKELISGLLDDFVEKNVLKLEEEEKKKI
FT                   YDAKLQDKARVLVDSIRQKNQEAGQVFVQTFLNIDKNSTSIKAPEETVAGPDESVGSAA
FT                   TLKLCPHEEFLKLCKERAGEIYPIKERKDRTRLALIICNTEFDHMPPRNGAALDILGMK
FT                   QLLEGLGYTVEVEEKLTARDMESVLWKFAAREEHKSSDSTFLVFMSHGILDGICGTMHS
FT                   EEEPDVLPYDTIFRTFNNRNCLSLKDKPKVIIVQACRGANRGELWVSDSPPALADSFSQ
FT                   SSENLEEDAVYKTHVEKDFIAFCSSTPHNVSWRDIKKGSLFITRLITCFQKYAWCCHLE
FT                   EVFRKVQQSFEKPNVKAQMPTVERLSMTRYFYLFPGN"
XX
SQ   Sequence 1761 BP; 558 A; 349 C; 362 G; 492 T; 0 other;
     tgctccttca aggcagtagg aagatactaa gcttattatc tatggctgaa gacaaacaca        60
     acaaaaaccc acttaagatg ttggaatctt tgggcaaaga actcatttct ggccttttgg       120
     atgactttgt ggaaaaaaat gtcctgaaat tggaggaaga ggagaagaaa aaaatttatg       180
     atgccaaact tcaagacaaa gcccgggtct tggttgattc tatacgacag aaaaaccaag       240
     aggcaggtca agtctttgtt caaactttcc taaacataga caaaaattcc accagtataa       300
     aagctcctga ggaaactgtg gctggaccag atgagtcagt gggatctgca gctaccctca       360
     agctttgccc tcatgaagaa ttcctgaaac tgtgtaaaga aagggctgga gagatctatc       420
     caataaagga gagaaaggac cgcactcgtc tggctctcat catatgcaac acagagtttg       480
     atcatatgcc tcccaggaat ggggctgccc ttgacatcct tggaatgaag cagctgcttg       540
     agggtcttgg ctacactgtg gaagtggaag agaaactcac agccagggac atggaatcag       600
     tgctgtggaa atttgctgca cgtgaagagc acaaatcctc agacagtaca ttcttggtgt       660
     tcatgtctca tggcatcctg gatgggatct gtgggactat gcacagtgag gaagaaccag       720
     atgtgttacc ttatgatacc atcttccgga cattcaacaa ccgtaattgc ctcagtctaa       780
     aggacaaacc taaagtcatc attgtccagg cctgcagagg tgcaaatcgt ggggaattgt       840
     gggtcagtga ctctccacca gccttggcag acagcttttc acagtcatcc gagaacctgg       900
     aagaggatgc tgtttacaag acccatgtag agaaggactt cattgctttc tgttcctcaa       960
     ctccacataa tgtgtcctgg agagacataa aaaaaggttc tctcttcatt acacgactca      1020
     tcacatgctt ccaaaaatat gcttggtgct gtcatcttga ggaagtattt aggaaggtac      1080
     aacaatcatt tgaaaaacca aatgttaaag cccagatgcc cactgttgaa cgactctcta      1140
     tgacaagata tttctacctc tttcctggca actgaaaata aaaatcacag gaaattcaac      1200
     catttatcag cttcaagaag catttttatc agcacagcat ccatgtttaa ccttttgtct      1260
     ttcaattaaa gtgaaaacat atgaactgtt ctttggggtc ctctaagaaa gaatagaatt      1320
     tcaattaaaa caatggatgg atggaaataa agtagaagaa gaaaactgga ttttcttgtt      1380
     atattgcata taatgcctgc actttactga gtgaagagaa ctagtcatga cttgccctca      1440
     gcagcagggt gaaaggagat ggtgcacatc tggagacaag gaccaaaaac tgggtcacct      1500
     gctcctttga tcactcatca aaccttgcaa ctagaattat ttggaagaaa tatttctaat      1560
     ttattattta accaacatca taggtcaagt tcaatttttt ttcagaaaag ttgttatggt      1620
     acctatgcat ctttcttctt atccataaat taatttgctt tcttgttgat gatttttcat      1680
     tccaaatttc caagcttcag gaaaattttg ttatttagca aacacttggt aattgtctaa      1740
     aataaattgg gcctttgatt t                                                1761
//